Alyssa Ross
c4e8f6072b
gwyddion: add libGL build input
...
Currently, this is propagated from cairo, but that will soon no longer
be the case.
2023-10-20 22:02:43 +00:00
Dmitry Kalinkin
6392f18258
Merge pull request #262351 from h7x4/remove-nix-exec-bits
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treewide: remove execute bit for non-executable `*.nix` files
2023-10-20 14:45:16 -04:00
R. Ryantm
06c6fb463b
root: 6.28.06 -> 6.28.08
2023-10-20 14:40:50 -04:00
github-actions[bot]
02a21c89b8
Merge staging-next into staging
2023-10-20 18:01:21 +00:00
github-actions[bot]
cfc75eec46
Merge master into staging-next
2023-10-20 18:00:54 +00:00
h7x4
e6321d2788
treewide: remove execute bit for non-executable *.nix
files
2023-10-20 19:55:39 +02:00
Mauricio Collares
af038be354
Merge pull request #262290 from collares/sage-matplotlib-3.8
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[staging-next] sage, rpy2: test fixes
2023-10-20 18:50:24 +02:00
markuskowa
8553dcf2e2
Merge pull request #262252 from r-ryantm/auto-update/gromacs
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gromacs: 2023.2 -> 2023.3
2023-10-20 18:07:22 +02:00
Mauricio Collares
54968254b0
sage: add nbclassic dependency
2023-10-20 14:54:45 +02:00
github-actions[bot]
b0ec8bbe1d
Merge staging-next into staging
2023-10-20 12:01:55 +00:00
github-actions[bot]
d7e9da1742
Merge master into staging-next
2023-10-20 12:01:24 +00:00
R. Ryantm
1daf6722ed
gromacs: 2023.2 -> 2023.3
2023-10-20 09:17:18 +00:00
OTABI Tomoya
0a18e1f929
Merge pull request #249750 from natsukium/bioawk/init
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bioawk: init at unstable-2017-09-11
2023-10-20 17:59:30 +09:00
natsukium
056f9e21c0
bowtie2: enable tests
2023-10-20 17:08:20 +09:00
natsukium
13fe1effaf
bowtie2: fix build on aarch64
2023-10-20 17:07:55 +09:00
natsukium
aae51697be
bowtie2: refactor
2023-10-20 17:06:09 +09:00
github-actions[bot]
024144542b
Merge staging-next into staging
2023-10-19 18:01:22 +00:00
github-actions[bot]
0bcaa2f556
Merge master into staging-next
2023-10-19 18:00:54 +00:00
markuskowa
bab9ed9e26
Merge pull request #262058 from sheepforce/openmolcas
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openmolcas: 23.06 -> 23.10
2023-10-19 17:25:11 +02:00
Phillip Seeber
b36fb3932c
openmolcas: 23.06 -> 23.10
2023-10-19 15:23:43 +02:00
R. Ryantm
db6910471f
alt-ergo: 2.5.1 -> 2.5.2
2023-10-19 06:27:42 +00:00
github-actions[bot]
bb7c6d7a79
Merge staging-next into staging
2023-10-19 00:02:54 +00:00
Artturi
5a1cc0e11d
Merge pull request #258431 from pbsds/stabilize-patches
2023-10-19 03:02:46 +03:00
github-actions[bot]
4b9cf6ff6e
Merge master into staging-next
2023-10-19 00:02:21 +00:00
Weijia Wang
369ab55a00
Merge pull request #250633 from jue89/add-horizonpy
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python311Packages.horizon-eda: init at 2.5.0
2023-10-19 01:18:01 +02:00
Juergen Fitschen
4c62088101
python311Packages.horizon-eda: init at 2.5.0
2023-10-19 01:03:34 +02:00
Juergen Fitschen
f203901b4f
horizon-eda: clarify package license
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Source: https://github.com/horizon-eda/horizon/blob/v2.5.0/org.horizon_eda.HorizonEDA.metainfo.xml#L6
2023-10-18 23:23:59 +02:00
scalavision
9fd3ea0f76
deeptools: 3.5.1 -> 3.5.4
2023-10-18 19:06:01 +02:00
github-actions[bot]
35eee590be
Merge master into staging-next
2023-10-18 00:02:17 +00:00
Weijia Wang
afc40db179
Merge pull request #260244 from r-ryantm/auto-update/kstars
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kstars: 3.6.6 -> 3.6.7
2023-10-17 23:51:35 +02:00
github-actions[bot]
14b83b5e05
Merge master into staging-next
2023-10-17 18:01:04 +00:00
R. Ryantm
8450377782
nvc: 1.10.3 -> 1.10.4
2023-10-17 11:36:40 +00:00
Weijia Wang
773a8314ef
geda: drop xorn
2023-10-17 10:20:21 +02:00
github-actions[bot]
c61915bc96
Merge master into staging-next
2023-10-17 06:01:22 +00:00
Weijia Wang
60fefd4cce
Merge pull request #261506 from wegank/tulip-bump
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tulip: 5.6.1 -> 5.7.2
2023-10-17 07:48:54 +02:00
R. Ryantm
355e594816
raxml: 8.2.12 -> 8.2.13
2023-10-16 22:16:12 +00:00
Weijia Wang
9f628e292e
tulip: 5.6.1 -> 5.7.2
2023-10-17 00:10:30 +02:00
Mauricio Collares
feff64db6e
sage: import matplotlib 3.8 upgrade patch
2023-10-16 16:12:12 +02:00
Martin Weinelt
94c8c31bee
Merge remote-tracking branch 'origin/master' into staging-next
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Conflicts:
- pkgs/development/python-modules/numba/default.nix
2023-10-15 22:31:34 +02:00
Henner Zeller
10e4eb07ad
surelog: 1.73 -> 1.76
2023-10-15 09:30:13 -05:00
Henner Zeller
b2dad8840a
uhdm: 1.74 -> 1.76
2023-10-15 09:30:13 -05:00
Weijia Wang
4a6dff8f83
drgeo: drop
2023-10-15 01:01:30 -03:00
github-actions[bot]
1d9483230a
Merge master into staging-next
2023-10-15 00:02:33 +00:00
Weijia Wang
64b7031b1b
Merge pull request #259657 from r-ryantm/auto-update/calc
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calc: 2.14.3.5 -> 2.15.0.1
2023-10-15 01:52:26 +02:00
Weijia Wang
e39aad56c2
Merge branch 'master' into staging-next
2023-10-14 16:33:49 +02:00
R. Ryantm
d89c2af58a
bowtie2: 2.5.1 -> 2.5.2
2023-10-14 10:06:32 +00:00
github-actions[bot]
8a68e0b5f5
Merge master into staging-next
2023-10-13 06:01:14 +00:00
Weijia Wang
7a15f4b3a7
Merge pull request #257390 from r-ryantm/auto-update/gwyddion
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gwyddion: 2.61 -> 2.63
2023-10-13 02:05:13 +02:00
github-actions[bot]
58485aaddb
Merge master into staging-next
2023-10-13 00:02:24 +00:00
Weijia Wang
db5c152f0e
Merge pull request #260341 from r-ryantm/auto-update/marvin
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marvin: 23.4.0 -> 23.12.0
2023-10-13 01:39:00 +02:00
Weijia Wang
bc0e786a54
marvin: sha256 -> hash
...
Co-authored-by: Christina Sørensen <christina@cafkafk.com>
2023-10-13 00:00:21 +02:00
github-actions[bot]
176015fc74
Merge master into staging-next
2023-10-12 18:01:06 +00:00
OTABI Tomoya
e8f331680d
Merge pull request #259418 from natsukium/blast-bin/update
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blast-bin: 2.13.0 -> 2.14.1
2023-10-12 23:49:59 +09:00
Alyssa Ross
1bb67a90ba
Merge remote-tracking branch 'origin/master' into staging-next
...
Conflicts:
pkgs/development/python-modules/bambi/default.nix
pkgs/development/python-modules/jaxopt/default.nix
2023-10-12 09:08:12 +00:00
markuskowa
094ca95e01
Merge pull request #259737 from markuskowa/split-gromacs
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gromacs: use multiple outputs
2023-10-12 09:45:50 +02:00
github-actions[bot]
0e9411554d
Merge master into staging-next
2023-10-11 12:01:09 +00:00
markuskowa
503a9f572d
Merge pull request #260254 from markuskowa/upd-nwchem
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nwchem: 7.2.0 -> 7.2.1
2023-10-11 11:09:13 +02:00
R. Ryantm
6a927f93f1
marvin: 23.4.0 -> 23.12.0
2023-10-11 03:10:59 +00:00
Ben Darwin
935338d123
caffe: opencv3 -> opencv4
2023-10-10 17:31:32 -04:00
Ben Darwin
2a2ba3dc3f
caffeWithCuda: mark broken
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> CMake Error at cuda_compile_1_generated_math_functions.cu.o.Release.cmake:280 (message):
> Error generating file
> /build/source/build/src/caffe/CMakeFiles/cuda_compile_1.dir/util/./cuda_compile_1_generated_math_functions.cu.o
2023-10-10 17:31:32 -04:00
Ben Darwin
8969c706d2
mxnet: opencv3 -> opencv4
2023-10-10 17:31:32 -04:00
Fabián Heredia Montiel
d676e059d7
Merge remote-tracking branch 'origin/master' into staging-next
2023-10-10 15:07:12 -06:00
Bernardo Meurer
fd1b81464c
Merge pull request #258328 from Madouura/pr/rocm-update
2023-10-10 16:20:36 -04:00
Weijia Wang
69926af81f
Merge pull request #260203 from wegank/cryptoverif-bump
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cryptoverif: 2.05 -> 2.07
2023-10-10 20:27:00 +02:00
github-actions[bot]
b1ae965cda
Merge master into staging-next
2023-10-10 18:00:56 +00:00
Weijia Wang
5a27d05b4b
Merge pull request #260233 from r-ryantm/auto-update/kissat
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kissat: 3.1.0 -> 3.1.1
2023-10-10 18:42:52 +02:00
Markus Kowalewski
ceff926e7b
nwchem: 7.2.0 -> 7.2.1
2023-10-10 18:12:57 +02:00
R. Ryantm
6f3c4aa963
kstars: 3.6.6 -> 3.6.7
2023-10-10 15:13:46 +00:00
R. Ryantm
bd39164038
kissat: 3.1.0 -> 3.1.1
2023-10-10 14:10:55 +00:00
Weijia Wang
4d34cbeece
cntk: drop
2023-10-10 10:38:21 -03:00
Weijia Wang
2890949ab5
cryptoverif: 2.05 -> 2.07
2023-10-10 14:23:06 +02:00
github-actions[bot]
0efc5df650
Merge master into staging-next
2023-10-10 12:01:29 +00:00
Ryan Mulligan
98deb47f4f
Merge pull request #260039 from r-ryantm/auto-update/cadical
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cadical: 1.5.3 -> 1.8.0
2023-10-10 04:18:42 -07:00
github-actions[bot]
06ee4dd693
Merge master into staging-next
2023-10-10 06:01:04 +00:00
R. Ryantm
cc7d88f247
gama: 2.25 -> 2.26
2023-10-10 03:25:45 +00:00
github-actions[bot]
6b95af2485
Merge master into staging-next
2023-10-10 00:02:12 +00:00
Et7f3
b0b04e6bff
calc: fix substituteInPlace call
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this code has moved in another file so we need to adapt our substituteInPlace
2023-10-10 01:05:22 +02:00
Madoura
e6f88a9a82
rocm-related: fixup for ROCm 5.7.0
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blender: fixup for ROCm 5.7.0
opensycl: fixup for ROCm 5.7.0
magma: fixup for ROCm 5.7.0
torch: fixup for ROCm 5.7.0
cp2k: fixup for ROCm 5.7.0
sirius: fixup for ROCm 5.7.0
spfft: fixup for ROCm 5.7.0
spla: fixup for ROCm 5.7.0
2023-10-09 17:03:19 -05:00
Guillaume Maudoux
07215db4cb
Merge pull request #259398 from whonore/update-dafny-4.3.0
2023-10-09 21:19:33 +02:00
R. Ryantm
f61509d8f3
cadical: 1.5.3 -> 1.8.0
2023-10-09 18:01:10 +00:00
Peder Bergebakken Sundt
7cc9e7c28e
vampire: make patch urls reproducible
2023-10-09 15:10:48 +02:00
github-actions[bot]
5903dfbe6d
Merge master into staging-next
2023-10-09 12:01:26 +00:00
markuskowa
b7129e447b
Merge pull request #258863 from sheepforce/cp2k
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cp2k: enable SIRIUS planewave code and optimisations
2023-10-09 13:34:25 +02:00
Phillip Seeber
dcd7efd1f9
cp2k: enable GPU offloading, sirius planewaves and optimisations
2023-10-09 10:48:16 +02:00
Markus Kowalewski
e3638150f2
gromacs: split outputs
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fix patching of pkgconfig files
2023-10-08 11:29:14 +02:00
Fabián Heredia Montiel
7f16b623fc
Merge remote-tracking branch 'origin/master' into staging-next
2023-10-08 00:18:22 -06:00
R. Ryantm
703a27178b
calc: 2.14.3.5 -> 2.15.0.1
2023-10-08 00:09:19 +00:00
Luflosi
ec38bafb02
abc-verifier: unstable-2023-06-28 -> unstable-2023-09-13
2023-10-07 11:52:04 -05:00
natsukium
d60c85fb75
blast-bin: add sourceProvenance to meta
2023-10-07 10:12:24 +09:00
Jan Tojnar
76a7aa445a
Merge branch 'master' into staging-next
...
Conflicts:
- pkgs/development/python-modules/xdot/default.nix
between 2f244e3647
and 1a9a257cf7
2023-10-06 23:18:00 +02:00
whonore
4b36cd01b3
dafny: 4.2.0 -> 4.3.0
2023-10-06 15:48:28 -04:00
natsukium
3dc0f1e7b7
blast-bin: 2.13.0 -> 2.14.1
...
Changelog: https://www.ncbi.nlm.nih.gov/books/NBK131777/#_Blast_ReleaseNotes_BLAST_2_14_1_August_2_
2023-10-07 01:59:18 +09:00
natsukium
96178c29a4
truvari: 4.0.0 -> 4.1.0
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Diff: https://github.com/ACEnglish/truvari/compare/v4.0.0...v4.1.0
Changelog: https://github.com/ACEnglish/truvari/releases/tag/v4.1.0
2023-10-07 01:30:27 +09:00
natsukium
776b2694a3
truvari: add meta.changelog
2023-10-07 01:30:27 +09:00
Justin Bedo
e347cca9f8
delly: 1.1.6 -> 1.1.7
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Diff: https://github.com/dellytools/delly/compare/v1.1.6...1.1.7
2023-10-06 14:12:05 +11:00
Artturi
67922fecef
Merge pull request #259253 from Artturin/pyfixes1
2023-10-06 04:54:03 +03:00
Artturin
58deb9e37a
apbs: fix py311 build
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c2e5af22c9/tools/manip/inputgen.py (L314)
2023-10-06 03:45:57 +03:00
github-actions[bot]
5f7be31bec
Merge master into staging-next
2023-10-06 00:02:31 +00:00
Phillip Seeber
fe9344689d
wxmacmolplt: fix linking
2023-10-05 18:09:35 +02:00
Vladimír Čunát
fa7835846a
Merge branch 'master' into staging-next
2023-10-04 22:40:54 +02:00
Nick Cao
caf7f31b75
Merge pull request #258910 from r-ryantm/auto-update/cryptominisat
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cryptominisat: 5.11.12 -> 5.11.14
2023-10-04 10:03:38 -04:00
github-actions[bot]
c7a3c2d71b
Merge master into staging-next
2023-10-04 12:01:01 +00:00
Doron Behar
d478d2c6b6
Merge pull request #258811 from Enzime/qalculate-bundle
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qalculate-gtk: generate bundle on macOS
2023-10-04 10:17:45 +03:00
R. Ryantm
2a57ec40ed
cryptominisat: 5.11.12 -> 5.11.14
2023-10-04 02:13:39 +00:00
Martin Weinelt
e29e5077fc
Merge remote-tracking branch 'origin/master' into staging-next
...
Conflicts:
- pkgs/development/python-modules/podcastparser/default.nix
2023-10-03 21:13:27 +02:00
Michael Hoang
a03367cae4
qalculate-gtk: generate bundle on macOS
2023-10-03 15:08:27 +01:00
Markus Kowalewski
425afd6755
openmolcas: use getDev to pickup libxc includes
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fix for split output of libxc ef2d57ee1c
2023-10-03 13:56:57 +02:00
Doron Behar
a7da38888f
Merge pull request #257652 from doronbehar/pkg/lammps
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lammps: 23Jun2022_update4 -> 2Aug2023_update1
2023-10-03 13:14:14 +03:00
github-actions[bot]
23a7292114
Merge master into staging-next
2023-10-02 18:01:04 +00:00
markuskowa
dcf2055eaf
Merge pull request #258211 from markuskowa/fix-nwchem
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nwchem: remove test jobs from output
2023-10-02 17:29:27 +02:00
markuskowa
ccdb27584c
Merge pull request #258190 from markuskowa/fix-cp2k
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c2pk: remove unit tests from output
2023-10-02 17:28:08 +02:00
Weijia Wang
ccdb43a66a
Merge branch 'master' into staging-next
2023-10-02 14:49:01 +02:00
Markus Kowalewski
1d953af53e
cp2k: fix libxc includes (use getDev)
2023-10-02 11:09:20 +02:00
Mauricio Collares
d4aaa0447a
Merge pull request #258501 from r-ryantm/auto-update/jmol
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jmol: 16.1.39 -> 16.1.41
2023-10-02 09:20:43 +02:00
Fabián Heredia Montiel
72b10ff62f
Merge pull request #258278 from markuskowa/split-libxsmm
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libxsmm: split outputs -> out, dev, doc
2023-10-01 22:53:43 -06:00
R. Ryantm
51ef74c648
jmol: 16.1.39 -> 16.1.41
2023-10-02 00:01:49 +00:00
github-actions[bot]
99d3e271f5
Merge master into staging-next
2023-10-01 06:01:03 +00:00
Weijia Wang
0396d3b0fb
Merge pull request #258254 from r-ryantm/auto-update/nest-mpi
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nest-mpi: 3.5 -> 3.6
2023-10-01 03:53:05 +02:00
Weijia Wang
d2f79d7443
Merge pull request #257369 from r-ryantm/auto-update/stacks
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stacks: 2.62 -> 2.65
2023-10-01 03:20:19 +02:00
Weijia Wang
0eb4c474a0
Merge branch 'master' into staging-next
2023-10-01 03:08:16 +02:00
Weijia Wang
293062bbdb
stacks: set platforms
2023-10-01 02:26:34 +02:00
Weijia Wang
00d57438ab
Merge pull request #256805 from r-ryantm/auto-update/neuron-mpi
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neuron-mpi: 8.2.2 -> 8.2.3
2023-10-01 00:44:58 +02:00
Weijia Wang
0b2e425b68
Merge pull request #256750 from r-ryantm/auto-update/ginac
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ginac: 1.8.6 -> 1.8.7
2023-10-01 00:40:22 +02:00
Weijia Wang
991ea4b415
Merge pull request #258269 from wegank/siril-bump
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siril: 1.0.6 -> 1.2.0
2023-10-01 00:16:35 +02:00
Markus Kowalewski
dad3ce4398
cp2k: fix libxsmm includes (use getDev)
2023-09-30 23:28:31 +02:00
Weijia Wang
032719d0c5
siril: 1.0.6 -> 1.2.0
2023-09-30 23:18:47 +02:00
R. Ryantm
a78f4ed541
nest-mpi: 3.5 -> 3.6
2023-09-30 18:54:13 +00:00
Markus Kowalewski
f1b44ffc1c
nwchem: remove test jobs from output
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The tests are not needed to run the program.
Removing the tests saves about 220 MB.
2023-09-30 16:15:37 +02:00
Markus Kowalewski
c883a53089
c2pk: remove unit tests from output
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reduces output size from 1.3GB to 960 MB
2023-09-30 15:03:12 +02:00
github-actions[bot]
50751b0602
Merge master into staging-next
2023-09-29 18:00:55 +00:00
Arnout Engelen
2add93ab93
Merge pull request #257795 from natsukium/dssp/update
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dssp: 4.4.2 -> 4.4.3
2023-09-29 14:50:46 +02:00
github-actions[bot]
c1a6c05aa7
Merge master into staging-next
2023-09-29 12:01:16 +00:00
Vincent Laporte
368f95104b
easycrypt: 2022.04 → 2023.09
2023-09-29 10:33:21 +02:00
github-actions[bot]
6fe9af917e
Merge master into staging-next
2023-09-29 06:01:05 +00:00
Vincent Laporte
82aaf63703
alt-ergo: 2.4.3 → 2.5.1
...
ocamlPackages.ocplib-simplex: 0.4 → 0.5
2023-09-29 06:43:44 +02:00
github-actions[bot]
e0e21b78ec
Merge master into staging-next
2023-09-29 00:02:21 +00:00
Peder Bergebakken Sundt
470614b671
treewide: Fix typos
2023-09-28 19:06:13 +02:00
github-actions[bot]
8fdaf11017
Merge master into staging-next
2023-09-28 12:01:25 +00:00
markuskowa
7e0e86fe35
Merge pull request #257718 from markuskowa/upd-mopac
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mopac: 22.0.6 -> 22.1.0
2023-09-28 10:23:28 +02:00
natsukium
c90607c5a7
dssp: 4.4.2 -> 4.4.3
...
Diff: https://github.com/PDB-REDO/dssp/compare/refs/tags/v4.4.2...v4.4.3
Changelog: https://github.com/PDB-REDO/libcifpp/releases/tag/refs/tags/v4.4.3
2023-09-28 15:38:55 +09:00
Markus Kowalewski
6367eb7ffd
mopac: 22.0.6 -> 22.1.0
2023-09-27 22:54:32 +02:00
Vladimír Čunát
4eae6fe151
Merge #247401 : glibc: 2.37-39 -> 2.38-23
...
...into staging
2023-09-27 18:04:40 +02:00
Doron Behar
2112a277f9
lammps: 23Jun2022_update4 -> 2Aug2023_update1
...
Diff: https://github.com/lammps/lammps/compare/stable_23Jun2022_update4...stable_2Aug2023_update1
2023-09-27 17:18:14 +03:00
github-actions[bot]
0ead40ab4d
Merge staging-next into staging
2023-09-27 06:01:26 +00:00
github-actions[bot]
9a4dae4abd
Merge master into staging-next
2023-09-27 06:01:00 +00:00
github-actions[bot]
763dd11b92
Merge staging-next into staging
2023-09-26 12:01:57 +00:00
github-actions[bot]
2717201e72
Merge master into staging-next
2023-09-26 12:01:28 +00:00
Weijia Wang
5cf0d8d81b
Merge pull request #256231 from r-ryantm/auto-update/uhdm
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uhdm: 1.73 -> 1.74
2023-09-26 11:38:43 +02:00
Janik
43ea837586
Merge pull request #257328 from kilianar/stellarium-23.3
2023-09-26 10:23:42 +02:00
github-actions[bot]
aa53f32537
Merge staging-next into staging
2023-09-26 06:01:27 +00:00
github-actions[bot]
3bfcfd7eef
Merge master into staging-next
2023-09-26 06:01:00 +00:00
R. Ryantm
272b458b29
gwyddion: 2.61 -> 2.63
2023-09-26 04:43:55 +00:00
Mario Rodas
3fc0d1348b
lean4: 4.0.0 -> 4.1.0
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Diff: https://github.com/leanprover/lean4/compare/v4.0.0...v4.1.0
Changelog: https://github.com/leanprover/lean4/blob/v4.1.0/RELEASES.md
2023-09-26 04:20:00 +00:00
Fabián Heredia Montiel
24dec617bb
Merge pull request #256676 from r-ryantm/auto-update/beluga
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beluga: 1.1 -> 1.1.1
2023-09-25 21:11:55 -06:00
R. Ryantm
90361534b7
stacks: 2.62 -> 2.65
2023-09-26 03:03:04 +00:00
kilianar
5eb942b80a
stellarium: 23.2 -> 23.3
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https://github.com/Stellarium/stellarium/releases/tag/v23.3
2023-09-25 22:12:36 +02:00
github-actions[bot]
93d8af17e7
Merge staging-next into staging
2023-09-25 12:01:41 +00:00
github-actions[bot]
3e52e5929d
Merge master into staging-next
2023-09-25 12:01:02 +00:00
Thiago Kenji Okada
1cfbc68e38
Merge pull request #257014 from r-ryantm/auto-update/hmmer
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hmmer: 3.3.2 -> 3.4
2023-09-25 12:48:35 +01:00
github-actions[bot]
74240c390b
Merge staging-next into staging
2023-09-24 18:01:25 +00:00
github-actions[bot]
03a82ba5d4
Merge master into staging-next
2023-09-24 18:00:54 +00:00
Luz
e9c44cb203
librepcb: 0.1.7 -> 1.0.0
2023-09-24 11:41:12 -05:00
Maximilian Bosch
5497c7ac5d
root: fix build w/ glibc-2.38
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Failing Hydra build: https://hydra.nixos.org/build/230518136
2023-09-24 15:12:03 +02:00
Mario Rodas
b289d79b8d
hmmer: add changelog to meta
2023-09-24 04:24:00 +00:00
R. Ryantm
272a0e1edb
hmmer: 3.3.2 -> 3.4
2023-09-24 04:23:47 +00:00
github-actions[bot]
035c6df194
Merge staging-next into staging
2023-09-24 00:03:26 +00:00
github-actions[bot]
0e6413dbff
Merge master into staging-next
2023-09-24 00:02:23 +00:00
Dmitry Kalinkin
9e7786c32b
Merge pull request #255928 from bcdarwin/remove-vtk_8
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vtk_8: remove
2023-09-23 15:50:41 -04:00
github-actions[bot]
0de27a8a5a
Merge staging-next into staging
2023-09-23 12:01:36 +00:00
github-actions[bot]
3180ce092d
Merge master into staging-next
2023-09-23 12:01:04 +00:00
R. Ryantm
d660b340ee
neuron-mpi: 8.2.2 -> 8.2.3
2023-09-23 02:33:53 +00:00
alyaeanyx
d3dfee8256
{libqalculate, qalculate-gtk, qalculate-qt}: 4.8.0 -> 4.8.1
2023-09-22 22:42:11 +02:00
R. Ryantm
c179caee7e
ginac: 1.8.6 -> 1.8.7
2023-09-22 20:01:05 +00:00
github-actions[bot]
d42c83a61e
Merge staging-next into staging
2023-09-22 18:01:33 +00:00
github-actions[bot]
583877beb2
Merge master into staging-next
2023-09-22 18:01:00 +00:00
László Kupcsik
c678bba28c
trimmomatic: init at 0.39
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Co-authored-by: Anderson Torres <torres.anderson.85@protonmail.com>
2023-09-22 13:50:18 -03:00
github-actions[bot]
1368cc7018
Merge staging-next into staging
2023-09-22 12:01:30 +00:00
github-actions[bot]
3431cedfe3
Merge master into staging-next
2023-09-22 12:01:02 +00:00
R. Ryantm
cf423daab0
beluga: 1.1 -> 1.1.1
2023-09-22 11:56:33 +00:00
Weijia Wang
ca3449710c
Merge pull request #254485 from r-ryantm/auto-update/cvc5
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cvc5: 1.0.7 -> 1.0.8
2023-09-22 11:14:06 +02:00
github-actions[bot]
e939ee5495
Merge staging-next into staging
2023-09-21 12:01:49 +00:00
github-actions[bot]
4c610adf95
Merge master into staging-next
2023-09-21 12:01:19 +00:00
Vincent Laporte
2abfae9e9b
coq: 8.17.1 -> 8.18.0
2023-09-21 11:02:55 +02:00
Doron Behar
8ace65ff3d
treewide: use finalAttrs in all packages I maintain ( #255902 )
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* mpd-touch-screen-gui: use finalAttrs in mkDerivation; reformat
* musescore: use finalAttrs in mkDerivation
* syncthingtray: use stdenv.mkDerivation with a function; reformat
* ocrfeeder: use finalAttrs in mkDerivation; reformat
* castget: use finalAttrs in mkDerivation
* gnome-network-displays: use finalAttrs in mkDerivation
* mailreaders: use finalAttrs in mkDerivation
* mswatch: use finalAttrs in mkDerivation
* uhd: use finalAttrs in mkDerivation
* maxima: use finalAttrs in mkDerivation
* qalculate-gtk: use finalAttrs in mkDerivation
* qalculate-qt: use finalAttrs in mkDerivation
* wxmaxima: use finalAttrs in mkDerivation
* lammps: use finalAttrs in mkDerivation
* mlterm: use finalAttrs in mkDerivation
* video-trimmer: use finalAttrs in mkDerivation
* nerdfonts: use finalAttrs in mkDerivation
* gnomeExtensions.easyScreenCast: use finalAttrs in mkDerivation
* octave: use finalAttrs in mkDerivation; reformat
* comedilib: use finalAttrs in mkDerivation
* cpp-utilities: use finalAttrs in mkDerivation
* libsForQt5.kpeoplevcard: use finalAttrs in mkDerivation; reformat
* liberio: use finalAttrs in mkDerivation
* libqalculate: use finalAttrs in mkDerivation; reformat
* libwtk-sdl2: use finalAttrs in mkDerivation
* libsForQt5.pulseaudio-qt: use finalAttrs in mkDerivation; reformat
* qrupdate: use finalAttrs in mkDerivation; reformat
* libsForQt5.qtforkawesome: use finalAttrs in mkDerivation; reformat
* libsForQt5.qtutilities: use finalAttrs in mkDerivation; reformat
* sqlitecpp: use finalAttrs in mkDerivation; reformat
* tweeny: use finalAttrs in mkDerivation
* volk: use finalAttrs in mkDerivation
* wiringpi: use finalAttrs in mkDerivation
* snzip: use finalAttrs in mkDerivation; reformat
* bpm-tools: use finalAttrs in mkDerivation; reformat
* sacd: use finalAttrs in mkDerivation
* gtk-gnutella: use finalAttrs in mkDerivation; reformat
* sile: use finalAttrs in mkDerivation
* pplatex: use finalAttrs in mkDerivation; reformat
2023-09-21 11:31:17 +03:00
github-actions[bot]
0c130bfad2
Merge staging-next into staging
2023-09-21 00:02:39 +00:00
Fabián Heredia Montiel
b2f85dbf28
Merge remote-tracking branch 'origin/master' into staging-next
2023-09-20 15:08:16 -06:00
Pol Dellaiera
958c531b62
Merge pull request #256069 from r-ryantm/auto-update/jmol
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jmol: 16.1.35 -> 16.1.39
2023-09-20 20:00:41 +02:00
github-actions[bot]
6d2b362ad9
Merge staging-next into staging
2023-09-20 06:01:50 +00:00
github-actions[bot]
8d8feb905e
Merge master into staging-next
2023-09-20 06:01:21 +00:00
R. Ryantm
89081e1fdf
uhdm: 1.73 -> 1.74
2023-09-20 04:08:31 +00:00
Weijia Wang
de8116cdb2
nvc: 1.10.2 -> 1.10.3
2023-09-20 00:23:53 +02:00
R. Ryantm
dd4bd3dabb
jmol: 16.1.35 -> 16.1.39
2023-09-19 08:55:58 +00:00
github-actions[bot]
234c077d43
Merge staging-next into staging
2023-09-19 06:01:36 +00:00
github-actions[bot]
3245a21e71
Merge master into staging-next
2023-09-19 06:01:00 +00:00
R. Ryantm
65033fea28
mosdepth: 0.3.4 -> 0.3.5
2023-09-19 00:55:31 +00:00
Ben Darwin
5a82c61519
elmerfem: unstable-2023-02-03 -> 2023-09-18
2023-09-18 13:37:08 -04:00
Nick Cao
18316a7344
Merge pull request #255507 from alyssais/qtInputs
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qt5.qtModule,qt6.qtModule: deprecate qtInputs
2023-09-18 09:32:56 -04:00
github-actions[bot]
9fd6a65a3a
Merge master into staging-next
2023-09-18 12:01:07 +00:00
OTABI Tomoya
79b7aacb8b
Merge pull request #255413 from r-ryantm/auto-update/blast
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blast: 2.14.0 -> 2.14.1
2023-09-18 17:55:58 +09:00
Alyssa Ross
aae53c8f97
qt5.qtModule,qt6.qtModule: deprecate qtInputs
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This is just an alias for propagatedBuildInputs. Having two names for
the same thing just makes things confusing.
2023-09-17 07:04:59 +00:00