Commit Graph

7984 Commits

Author SHA1 Message Date
Nick Cao
f6f59fdce7
Merge pull request #248280 from r-ryantm/auto-update/seqkit
seqkit: 2.5.0 -> 2.5.1
2023-08-09 23:23:15 -06:00
R. Ryantm
6d530a6389 seqkit: 2.5.0 -> 2.5.1 2023-08-10 04:42:38 +00:00
figsoda
a69648b581 egglog: unstable-2023-07-19 -> unstable-2023-08-09
Diff: 9fe03ad35a...de31786679
2023-08-09 16:46:12 -04:00
figsoda
fba2eab4c0 reason-shell: init at 0.3.10
https://github.com/jaywonchung/reason
2023-08-08 14:51:53 +00:00
Janik
777fcd15e2
Merge pull request #245677 from fsagbuya/linux-gpib 2023-08-08 14:52:14 +02:00
github-actions[bot]
dd48ee46cf
Merge master into staging-next 2023-08-07 12:00:52 +00:00
Weijia Wang
c34272e65c
Merge pull request #247623 from r-ryantm/auto-update/samtools
samtools: 1.17 -> 1.18
2023-08-07 13:50:07 +02:00
Vladimír Čunát
a93afc73ef
polymake: pin back to perl 5.36
https://hydra.nixos.org/build/230316833/nixlog/2/tail
2023-08-07 08:52:10 +02:00
R. Ryantm
06fadebc20 libpoly: 0.1.11 -> 0.1.13 2023-08-07 04:40:37 +00:00
R. Ryantm
a303664816 samtools: 1.17 -> 1.18 2023-08-07 01:22:06 +00:00
github-actions[bot]
191e60634e
Merge master into staging-next 2023-08-06 18:01:04 +00:00
Mario Rodas
156a49aa49
Merge pull request #236810 from natsukium/cmtk/update
cmtk: 3.3.1 -> 3.3.2; fix darwin build
2023-08-06 11:51:18 -05:00
natsukium
edc5d13ef3
streamlit: manage as python-modules 2023-08-06 22:55:01 +09:00
github-actions[bot]
6458cb74a2
Merge master into staging-next 2023-08-05 12:01:30 +00:00
Mauricio Collares
91c8b652db
Merge pull request #246980 from collares/sage-next-20230728
[staging-next] sage: numpy/scipy upgrade patches
2023-08-05 10:14:27 +02:00
Doron Behar
82326d676d
Merge pull request #247122 from doronbehar/pkg/lammps
lammps: 23Jun2022_update4 -> 2Aug2023
2023-08-05 08:00:23 +00:00
Nick Cao
bbe9ae26ec
Merge pull request #247159 from panicgh/dataexplorer
dataexplorer: 3.7.8 -> 3.7.9
2023-08-05 00:27:43 -06:00
Andrey Alekseenko
2f707365e2 gromacs: update meta
- license is now lgpl21Plus
- accurate longDescription
2023-08-05 00:44:04 +00:00
Weijia Wang
70f066f77f
Merge pull request #247155 from wegank/beluga-hash
beluga: fix hash
2023-08-04 22:10:47 +02:00
Weijia Wang
5c9ba9e55c
Merge pull request #246863 from r-ryantm/auto-update/picard-tools
picard-tools: 3.0.0 -> 3.1.0
2023-08-04 21:17:27 +02:00
Weijia Wang
ac82995363
Merge pull request #247137 from wegank/guile-platforms-3
treewide: reduce guile_2_0 usage
2023-08-04 20:36:06 +02:00
Weijia Wang
d4e52e4564 beluga: fix hash 2023-08-04 19:48:22 +02:00
Weijia Wang
c39c0479dd geda: 1.8.2-20130925 -> 1.10.2 2023-08-04 19:10:54 +02:00
Vincent Laporte
14651559b5 hol_light: 2019-10-06 → 2023-07-21 2023-08-04 18:15:31 +02:00
Doron Behar
4939850514 lammps: 23Jun2022_update4 -> 2Aug2023 2023-08-04 17:48:40 +03:00
Nicolas Benes
afd76e93e3 dataexplorer: 3.7.8 -> 3.7.9 2023-08-04 14:19:25 +02:00
markuskowa
394beeefa6
Merge pull request #246983 from sheepforce/molcas-qcmaquis
openmolcas: enable dmrg and nevpt2 support
2023-08-04 10:55:44 +02:00
Jan Malakhovski
5852f26bdc treewide: noop: refer to src.name or similar in sourceRoot where appropriate, part 1: trivial cases 2023-08-03 16:32:03 +00:00
Weijia Wang
029622d055
Merge pull request #246876 from wegank/jogl-platforms
gephi, processing: support more platforms
2023-08-03 17:47:40 +02:00
Phillip Seeber
eacf49d19e openmolcas: enable dmrg and nevpt2 support 2023-08-03 17:34:32 +02:00
Mauricio Collares
c0f4dc2f59
Merge pull request #246573 from CRTified/sage-overrideScope
sage: use overrideScope instead of packageOverrides
2023-08-03 17:02:44 +02:00
Weijia Wang
c9b8162d3d gephi: unrestrict platforms 2023-08-03 15:33:20 +02:00
Florian Agbuya
1d41078177 linux-gpib: init at 4.3.6 2023-08-03 21:19:45 +08:00
R. Ryantm
29a0a9e29a picard-tools: 3.0.0 -> 3.1.0 2023-08-02 22:03:03 +00:00
Weijia Wang
4ae82b0bbe
Merge pull request #246823 from bcdarwin/update-beluga
beluga: 1.0 -> 1.1
2023-08-02 23:19:07 +02:00
Weijia Wang
66aedfd010
Merge pull request #246815 from r-ryantm/auto-update/veryfasttree
veryfasttree: 4.0.1 -> 4.0.2
2023-08-02 21:56:37 +02:00
Weijia Wang
e4e313aeff
Merge pull request #246485 from r-ryantm/auto-update/bcftools
bcftools: 1.17 -> 1.18
2023-08-02 19:51:47 +02:00
Ben Darwin
93a35301f1 beluga: 1.0 -> 1.1 2023-08-02 13:20:41 -04:00
Pol Dellaiera
9a772d7658
veryfasttree: use finalAttrs pattern 2023-08-02 18:51:11 +02:00
R. Ryantm
1fd16883d4 veryfasttree: 4.0.1 -> 4.0.2 2023-08-02 16:13:45 +00:00
Mauricio Collares
c25f522dda sage: import upstream numpy/scipy upgrade patches 2023-08-02 11:41:20 +02:00
Weijia Wang
b5416bf837
Merge pull request #246593 from jiegec/auto-update/cbmc
cbmc: 5.87.0 -> 5.88.1
2023-08-01 23:00:00 +02:00
Weijia Wang
23332e13fe
Merge pull request #243407 from natsukium/paml/update
paml: 4.9j -> 4.10.7
2023-08-01 22:09:44 +02:00
Jiajie Chen
b96dbd032c cbmc: 5.87.0 -> 5.88.1 2023-08-01 23:52:10 +08:00
Doron Behar
43ce484589
Merge pull request #245375 from doronbehar/pkg/lammps
lammps: numerous improvements
2023-08-01 14:44:57 +00:00
markuskowa
b89bbeaac5
Merge pull request #246331 from sheepforce/cp2k
cp2k: 2023.1 -> 2023.2
2023-08-01 15:52:32 +02:00
Carl Richard Theodor Schneider
27657a22ba sage: use overrideScope instead of packageOverrides 2023-08-01 15:04:21 +02:00
sheepforce
ab6fef15e0 stellarium: add patch for indi 2.0 compatibility 2023-08-01 11:12:10 +00:00
R. Ryantm
487c6ac2bd bcftools: 1.17 -> 1.18 2023-08-01 03:38:31 +00:00
Weijia Wang
30464bb5c5 treewide: fix mvnHash 2023-07-31 21:13:40 +02:00