1027 Commits

Author	SHA1	Message	Date
R. Ryantm	40b736f0e8	last: 1456 -> 1460	2023-07-25 04:34:13 +00:00
github-actions[bot]	449a683b10	Merge master into staging-next	2023-07-24 00:02:26 +00:00
natsukium	e54f06de69	dssp: 4.3.1 -> 4.4.2 ... Diff: https://github.com/PDB-REDO/dssp/compare/refs/tags/v4.3.1...v4.4.2 Changelog: https://github.com/PDB-REDO/libcifpp/releases/tag/refs/tags/v4.4.2	2023-07-23 21:24:23 +09:00
Tobias Mayer	ba2ce6e73b	various packages: pin boost179 ... Taken from PR #244831 and vcunat amended the miopen override.	2023-07-22 16:54:22 +02:00
R. Ryantm	7a9d01d44c	seqkit: 2.4.0 -> 2.5.0	2023-07-17 11:15:14 +00:00
natsukium	7cec88e50f	delly: enable openmp	2023-07-14 00:20:20 +09:00
natsukium	ae95c0d5a5	delly: refactor	2023-07-14 00:18:27 +09:00
natsukium	61be2ca18a	delly: enable darwin support ... - add passthru.tests	2023-07-13 23:54:39 +09:00
R. Ryantm	b5e04f0bc7	kallisto: 0.48.0 -> 0.50.0	2023-07-09 17:19:43 +00:00
Weijia Wang	6d506a9d51	Merge pull request #242302 from r-ryantm/auto-update/nest-mpi ... nest-mpi: 3.4 -> 3.5	2023-07-09 12:21:22 +03:00
R. Ryantm	ead7b7800d	nest-mpi: 3.4 -> 3.5	2023-07-08 16:03:30 +00:00
R. Ryantm	47d5bee543	veryfasttree: 4.0 -> 4.0.1	2023-07-08 07:27:05 +00:00
Weijia Wang	1e0d363214	Merge pull request #241136 from r-ryantm/auto-update/veryfasttree ... veryfasttree: 3.1.1 -> 4.0	2023-07-03 17:17:51 +03:00
Weijia Wang	82d4f6b43d	veryfasttree: fix build on darwin	2023-07-03 12:29:44 +03:00
Martin Weinelt	bb40b8c205	Merge pull request #235322 from natsukium/dssp/update ... dssp: 4.2.2.1 -> 4.3.1; libcifpp: 5.0.8 -> 5.1.0.1; libmcfp: 1.2.3 -> 1.2.4	2023-07-02 23:12:49 +02:00
figsoda	50acc2d57a	pkgs/applications: replace "${version}" with version	2023-07-02 14:39:50 -04:00
R. Ryantm	cb16c50571	veryfasttree: 3.1.1 -> 4.0	2023-07-02 15:55:36 +00:00
natsukium	7b49fced0f	dssp: fix format ... - add changelog to meta - use finalAttrs	2023-07-01 16:40:29 +09:00
natsukium	fba5a4d702	dssp: 4.2.2.1 -> 4.3.1 ... Diff: https://github.com/PDB-REDO/dssp/compare/v4.2.2.1...v4.3.1	2023-07-01 16:36:36 +09:00
R. Ryantm	abfcd95c63	mosdepth: 0.3.3 -> 0.3.4	2023-06-28 10:52:42 +00:00
Weijia Wang	826bdb7214	Merge pull request #239691 from r-ryantm/auto-update/diamond ... diamond: 2.1.7 -> 2.1.8	2023-06-26 07:46:03 +02:00
R. Ryantm	fa6b5a3cb3	last: 1453 -> 1456	2023-06-25 11:01:07 -03:00
R. Ryantm	754d578555	diamond: 2.1.7 -> 2.1.8	2023-06-25 04:35:30 +00:00
Mario Rodas	2bd4a56ee1	Merge pull request #237950 from bcdarwin/bppsuite-fix-homepage ... bppsuite: fix homepage	2023-06-16 18:28:27 -05:00
Ben Darwin	9120f78e06	bppsuite: fix homepage ... Old homepage is down, so point to GitHub instead.	2023-06-15 12:18:11 -04:00
natsukium	7b36afffd6	kalign: init at 3.3.5	2023-06-14 21:05:58 +09:00
natsukium	3d1b9f0819	macs2: rename from MACS2	2023-06-13 21:47:47 +00:00
natsukium	12cab182ae	MACS2: 2.2.7.1 -> 2.2.8 ... Diff: https://github.com/macs3-project/MACS/compare/v2.2.7.1...v2.2.8 changelog: https://github.com/macs3-project/MACS/releases/tag/v2.2.8	2023-06-13 21:47:47 +00:00
natsukium	597e4e8652	aragorn: fix format ... - use finalAttrs instead of rec - add runHook	2023-06-08 18:42:29 +09:00
natsukium	bb317093e8	aragorn: 1.2.38 -> 1.2.41 ... - change the source and homepage - change the license	2023-06-08 18:42:24 +09:00
Weijia Wang	bff97d5215	Merge pull request #235727 from r-ryantm/auto-update/diamond ... diamond: 2.1.6 -> 2.1.7	2023-06-04 19:10:45 +02:00
R. Ryantm	1f231abe57	fastp: 0.23.3 -> 0.23.4	2023-06-04 03:21:21 +00:00
R. Ryantm	33d8777af9	diamond: 2.1.6 -> 2.1.7	2023-06-03 08:46:43 +00:00
R. Ryantm	7c4e31bb4c	igv: 2.16.0 -> 2.16.1	2023-05-31 13:33:15 +00:00
R. Ryantm	71a23afb45	iqtree: 2.2.2.4 -> 2.2.2.6	2023-05-30 01:13:17 +00:00
R. Ryantm	bebbc418d4	seqtk: 1.3 -> 1.4	2023-05-28 06:48:51 +00:00
R. Ryantm	216e1726da	blast: 2.13.0 -> 2.14.0	2023-05-26 00:23:49 +00:00
figsoda	8014b08ee0	treewide/applications: use top-level fetchPypi	2023-05-25 10:51:30 -04:00
Weijia Wang	6d71b5d6de	iqtree: set platforms	2023-05-22 11:14:57 +03:00
R. Ryantm	b36979ec74	iqtree: 2.2.0.4 -> 2.2.2.4	2023-05-22 04:48:16 +00:00
Weijia Wang	7c6ca2791b	Merge pull request #231635 from natsukium/bwa/build-on-aarch64 ... bwa: 0.7.17 -> unstable-2022-09-23	2023-05-18 01:10:14 +03:00
Nick Cao	906c7dd78c	Merge pull request #231975 from jbedo/fastp ... fastp: 0.23.2 -> 0.23.3	2023-05-15 05:11:28 -06:00
natsukium	04dd7f41e7	bwa: add runHook	2023-05-15 16:13:49 +09:00
natsukium	c85dced23e	bwa: update license	2023-05-15 16:13:49 +09:00
natsukium	01ddcaa879	bwa: 0.7.17 -> unstable-2022-09-23 ... Diff: https://github.com/lh3/bwa/compare/v0.7.17...139f68fc4c3747813783a488aef2adc86626b01b	2023-05-15 16:13:45 +09:00
Ryan Lahfa	308ee09f2f	Merge pull request #231598 from natsukium/truvari/disable-tests-darwin ... truvari: disable some tests on darwin	2023-05-15 09:09:09 +02:00
Justin Bedo	60c69da248	fastp: 0.23.2 -> 0.23.3	2023-05-15 15:03:24 +10:00
natsukium	7edb72db10	truvari: add patches to fix truvari anno	2023-05-15 10:01:38 +09:00
Ben Booth	fed8eeba5c	jbrowse: init at 2.5.0	2023-05-12 11:24:26 -07:00
Justin Bedo	c7a6773f8e	subread: 2.0.5 -> 2.0.6	2023-05-10 22:30:35 +10:00