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6661 Commits

Author SHA1 Message Date
Artturi
79c42aa06c
Merge pull request #186564 from Artturin/crossevalfixes 
Fixes for cross-compilation
 2022-08-27 17:49:00 +03:00
Jonas Heinrich
ed227dc9fb
Merge pull request #168109 from r-ryantm/auto-update/bcftools 
bcftools: 1.15 -> 1.16
 2022-08-27 08:51:34 +02:00
Mario Rodas
40ad284f8f lean: 3.46.0 -> 3.47.0 2022-08-27 04:20:00 +00:00
Theodore Ni
bb1d34d0f1
cvc3: reenable stackprotector on aarch64-darwin 
The original error that required disabling the stack protector on
aarch64-darwin has been fixed in GCC.
 2022-08-25 19:11:45 -07:00
Jonas Heinrich
21ba29f226
Merge pull request #181338 from thyol/diamond 
diamond: 0.8.36 -> 2.0.15
 2022-08-25 15:25:03 +02:00
Jonas Heinrich
a289c54a90
Merge pull request #184365 from r-ryantm/auto-update/marvin 
marvin: 22.8.0 -> 22.13.0
 2022-08-25 10:21:44 +02:00
Sandro
2b87b01423
Merge pull request #187334 from fedeinthemix/wolfram-update 2022-08-24 22:07:00 +02:00
Jonas Heinrich
b8e0c9b652
Merge pull request #183253 from r-ryantm/auto-update/angsd 
angsd: 0.937 -> 0.938
 2022-08-24 10:35:05 +02:00
Jonas Heinrich
c199cfabff
Merge pull request #184694 from r-ryantm/auto-update/SPAdes 
SPAdes: 3.15.4 -> 3.15.5
 2022-08-23 20:21:42 +02:00
K900
05aa6c1026 xyce: fix eval after #187842 2022-08-23 09:43:48 +03:00
Gabriel Ebner
c83b87fecd
Merge pull request #187883 from alyaeanyx/qalculate-4.3.0 
{libqalculate, qalculate-gtk}: 4.2.0 -> 4.3.0
 2022-08-22 18:47:13 +02:00
Gabriel Ebner
e99329eb02 elan: overwrite llvm-ar with stdenv ar 2022-08-22 16:52:52 +02:00
alyaeanyx
61b47c361c {libqalculate, qalculate-gtk}: 4.2.0 -> 4.3.0 2022-08-22 16:14:34 +02:00
Jonas Heinrich
ed7e80c85b
Merge pull request #183893 from r-ryantm/auto-update/emuflight-configurator 
emuflight-configurator: 0.4.0 -> 0.4.1
 2022-08-22 16:07:10 +02:00
Jonas Heinrich
fbf9205774
Merge pull request #185912 from r-ryantm/auto-update/fityk 
fityk: 1.3.1 -> 1.3.2
 2022-08-21 21:34:00 +02:00
Jonas Heinrich
5cb64f6046
Merge pull request #186958 from r-ryantm/auto-update/igv 
igv: 2.13.2 -> 2.14.0
 2022-08-21 21:11:49 +02:00
Jonas Heinrich
48c0cae744
Merge pull request #184713 from r-ryantm/auto-update/siril 
siril: 1.0.0 -> 1.0.3
 2022-08-21 18:13:09 +02:00
Jonas Heinrich
4cde04611f
Merge pull request #184011 from r-ryantm/auto-update/fricas 
fricas: 1.3.7 -> 1.3.8
 2022-08-21 15:16:39 +02:00
R. Ryantm
49f4071f30 eggnog-mapper: 2.1.7 -> 2.1.9 2022-08-21 12:45:21 +00:00
Jonas Heinrich
8508d5decf
Merge pull request #183724 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.26.11 -> 2.27.4
 2022-08-21 10:03:42 +02:00
Sandro
c637bce3d9
Merge pull request #187429 from HHR2020/geogebra-723 2022-08-21 03:49:26 +02:00
HHR2020
9a946f0bf4 geogebra6: 6-0-676-0 -> 6-0-723-0 2022-08-19 18:16:37 +08:00
HHR2020
34cfab69d2 geogebra: 5-0-706-0 -> 5-0-723-0 2022-08-19 18:16:12 +08:00
Christian Kögler
f99c37f463
Merge pull request #187340 from r-ryantm/auto-update/cbmc 
cbmc: 5.63.0 -> 5.64.0
 2022-08-19 10:24:27 +02:00
Robert Scott
dbb68933c8
Merge pull request #185326 from risicle/ris-streamlit-1.11.1 
streamlit: 1.2.0 -> 1.11.1
 2022-08-18 23:39:36 +01:00
R. Ryantm
e0377f4a23 cbmc: 5.63.0 -> 5.64.0 2022-08-18 20:25:31 +00:00
Federico Beffa
c01bc4268a wolfram-engine: 13.0.1 -> 13.1.0 2022-08-18 21:27:29 +02:00
R. Ryantm
98d1f4c35d bcftools: 1.15 -> 1.16 2022-08-18 18:44:42 +00:00
Jiajie Chen
da87f77102 cbmc: init at 5.63.0 
Cadical is used as sat solver backend.

https://github.com/diffblue/cbmc/releases/tag/cbmc-5.63.0
 2022-08-18 05:21:32 +02:00
Sebastián Mancilla
68696eca80
Merge pull request #180682 from r-ryantm/auto-update/fast-downward 
fast-downward: 21.12.0 -> 22.06.0
 2022-08-17 20:28:49 -04:00
Vincent Laporte
9bb0d53a4a alt-ergo: 2.4.1 → 2.4.2 2022-08-17 17:07:27 +02:00
superherointj
fdfb409681
Merge pull request #185331 from r-ryantm/auto-update/jmol 
jmol: 14.32.66 -> 14.32.68
 2022-08-17 11:38:41 -03:00
Sandro
b3da007795
Merge pull request #186604 from panicgh/sigrok 2022-08-17 14:44:28 +02:00
Nicolas Benes
d8f986d902 pulseview: 0.4.1 -> 0.4.2 2022-08-16 15:51:13 +02:00
R. Ryantm
c20b56187c jmol: 14.32.66 -> 14.32.68 2022-08-16 13:39:44 +00:00
R. Ryantm
f4c3ff2d7f igv: 2.13.2 -> 2.14.0 2022-08-16 13:24:02 +00:00
Artturin
c6568adb00 treewide: makeWrapper buildInputs to nativeBuildInputs 
most found with https://github.com/siraben/nix-lint
 2022-08-16 13:14:19 +03:00
superherointj
f7414aeae2
Merge pull request #186662 from r-ryantm/auto-update/messer-slim 
messer-slim: 3.7.1 -> 4.0
 2022-08-15 15:40:46 -03:00
Christian Kögler
10bf9a30cd
Merge pull request #179082 from k3a/openboardview 
openboardview: init at 9.0.3
 2022-08-15 16:54:43 +02:00
Christian Kögler
121d695571
Merge pull request #183328 from r-ryantm/auto-update/graphia 
graphia: 3.0 -> 3.1
 2022-08-15 14:13:00 +02:00
Mrmaxmeier
4929601fe9 bitwuzla: unstable-2021-07-01 -> unstable-2022-08-07 2022-08-14 22:58:44 +02:00
R. Ryantm
6130491cdf openhantek6022: 3.2.5 -> 3.3.1 2022-08-14 16:16:19 +00:00
R. Ryantm
c37112d2d0 messer-slim: 3.7.1 -> 4.0 2022-08-14 14:11:37 +00:00
Jonas Heinrich
a46597d7f9
Merge pull request #186307 from r-ryantm/auto-update/gretl 
gretl: 2022a -> 2022b
 2022-08-14 14:25:45 +02:00
Sandro
6a8e911454
Merge pull request #185995 from wegank/nvc-1.7.0 2022-08-14 00:49:15 +02:00
R. Ryantm
7f3ad42166 snakemake: 7.12.0 -> 7.12.1 2022-08-13 16:16:11 -04:00
Mario Rodas
0cab4c8f8a
Merge pull request #183012 from bcdarwin/update-mni-autoreg 
mni_autoreg: unstable-2017-09-22 -> unstable-2022-05-20
 2022-08-13 01:05:26 -05:00
Mario Rodas
6aeb44c32e
Merge pull request #185211 from r-ryantm/auto-update/delly 
delly: 1.0.3 -> 1.1.3
 2022-08-13 00:41:48 -05:00
Austin Seipp
5b93ac113c yosys: 0.18 -> 0.20 
Includes necessary `abc` update as well.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2022-08-12 13:23:18 -05:00
Sebastián Mancilla
b9ce2756a1
Merge pull request #178884 from dtzWill/update/verliator-4.224 
verilator: 4.222 -> 4.224
 2022-08-12 12:00:50 -04:00
R. Ryantm
272c4c9f60 gretl: 2022a -> 2022b 2022-08-12 15:40:37 +00:00
Mario Rodas
b473175b3c
Merge pull request #185570 from kilianar/igv-2.13.2 
igv: 2.8.13 -> 2.13.2
 2022-08-12 06:32:23 -05:00
Mario Rodas
e27fb54ad8
Merge pull request #185834 from kilianar/lean-3.46.0 
lean: 3.45.0 -> 3.46.0
 2022-08-12 05:40:55 -05:00
Weijia Wang
0e12c8993e nvc: 1.6.2 -> 1.7.0 2022-08-11 01:27:57 +02:00
R. Ryantm
50f7eed980 fityk: 1.3.1 -> 1.3.2 2022-08-10 13:28:43 +00:00
Gabriel Ebner
f056e64e5b
Merge pull request #180766 from jvierling/metis-prover 
metis-prover: 2.3.20160713 -> 2.4.20200713
 2022-08-10 13:02:34 +02:00
kilianar
3bf4c6f470 lean: 3.45.0 -> 3.46.0 
https://github.com/leanprover-community/lean/releases/tag/v3.46.0
 2022-08-09 22:21:39 +02:00
Jonas Heinrich
3cbb7231b5
Merge pull request #185393 from r-ryantm/auto-update/xschem 
xschem: 3.0.0 -> 3.1.0
 2022-08-08 10:43:11 +02:00
kilianar
0442ab82e0 igv: 2.8.13 -> 2.13.2 
- https://software.broadinstitute.org/software/igv/2.9.x
- https://software.broadinstitute.org/software/igv/2.10.x
- https://software.broadinstitute.org/software/igv/2.11.x
- https://software.broadinstitute.org/software/igv/2.12.x
- https://software.broadinstitute.org/software/igv/2.13.x
 2022-08-07 17:53:06 +02:00
Bobby Rong
934c6c9a95
Merge pull request #184334 from r-ryantm/auto-update/mafft 
mafft: 7.490 -> 7.505
 2022-08-07 16:18:05 +08:00
Bobby Rong
197f77cfad
Merge pull request #184937 from r-ryantm/auto-update/gprojector 
gprojector: 3.0.3 -> 3.0.4
 2022-08-07 16:13:26 +08:00
Dmitry Kalinkin
30887dc20b
Merge pull request #184371 from veprbl/pr/root_6_26_06 
root: 6.26.04 -> 6.26.06
 2022-08-06 21:43:59 -04:00
R. Ryantm
ea50144392 xschem: 3.0.0 -> 3.1.0 2022-08-06 09:02:23 +00:00
Robert Scott
4b7937fd7b streamlit: 1.2.0 -> 1.11.1 2022-08-06 00:04:36 +01:00
Bobby Rong
88cb001dc5
Merge pull request #184250 from r-ryantm/auto-update/JAGS 
jags: 4.3.0 -> 4.3.1
 2022-08-05 19:37:07 +08:00
R. Ryantm
8b7c09d0e6 delly: 1.0.3 -> 1.1.3 2022-08-05 08:58:15 +00:00
Guillaume Girol
a9cb4fcace
Merge pull request #182348 from muscaln/fritzing-bump 
fritzing: unstable-2021-09-22 -> unstable-2022-07-01
 2022-08-03 22:16:57 +00:00
evils
bd87e0b8ab
kicad: 6.0.6 -> 6.0.7 (#184935) 
and fix handling of the '6.0.7' branch
  not sure how the --heads got in there
 2022-08-03 12:36:35 -04:00
Mustafa Çalışkan
8c3afe0978 fritzing: unstable-2021-09-22 -> unstable-2022-07-01 2022-08-03 16:13:41 +03:00
Ben Siraphob
e05c784516
Merge pull request #184286 from r-ryantm/auto-update/kstars 2022-08-02 20:29:26 -07:00
R. Ryantm
e86aac0222 gprojector: 3.0.3 -> 3.0.4 2022-08-03 02:51:26 +00:00
Sandro
e9984bc607
Merge pull request #182705 from luispedro/no_test_samtools_on_cross_compile 2022-08-02 23:20:38 +02:00
superherointj
5c30c1cbf1
Merge pull request #183064 from bcdarwin/update-mcrl2 
mcrl2: 201707 -> 202206
 2022-08-02 15:50:46 -03:00
Luis Pedro Coelho
5877d8e072 samtools: Fix cross-compilation 
Tests require bgzip which comes from the htslib package.

This did not cause problems prior to
41485e7337 as tests were not run in
cross-compilation.
 2022-08-02 17:52:50 +02:00
Sandro
e76aa82431
Merge pull request #184598 from wegank/treewide-fix-platforms 2022-08-02 15:57:56 +02:00
Sandro
2d087731af
Merge pull request #180507 from wegank/scalp-init 2022-08-02 14:10:21 +02:00
Bobby Rong
673b00dee3
Merge pull request #184166 from r-ryantm/auto-update/gnuastro 
gnuastro: 0.17 -> 0.18
 2022-08-02 19:51:33 +08:00
R. Ryantm
cb9699aa77 siril: 1.0.0 -> 1.0.3 2022-08-02 03:48:56 +00:00
R. Ryantm
921b81745d SPAdes: 3.15.4 -> 3.15.5 2022-08-02 02:26:56 +00:00
Justin Bedő
48a6027d08
Merge pull request #184271 from r-ryantm/auto-update/last 
last: 1268 -> 1406
 2022-08-02 11:09:32 +10:00
ajs124
7207f24c32
Merge pull request #180052 from lopsided98/qgroundcontrol-update 2022-08-01 23:51:06 +02:00
ajs124
ee81907db5
Merge pull request #180029 from TilCreator/fixQgroundcontrolr 2022-08-01 23:43:29 +02:00
Weijia Wang
278086eddb treewide: fix platforms 2022-08-01 18:33:27 +02:00
Guillaume Girol
cff31d3d97
Merge pull request #181762 from sikmir/stellarium 
stellarium: 0.22.1 → 0.22.2, unbreak on darwin
 2022-08-01 14:14:13 +00:00
Jörg Thalheim
e50f15239e
Merge pull request #184188 from r-ryantm/auto-update/getdp 
getdp: 3.4.0 -> 3.5.0
 2022-08-01 08:24:46 +01:00
R. Ryantm
999e37a21a polymake: 4.6 -> 4.7 2022-08-01 06:15:03 +00:00
Dmitry Kalinkin
1e64d9a87c
root: 6.26.04 -> 6.26.06 2022-07-31 19:43:07 -04:00
R. Ryantm
b5e7879cd9 marvin: 22.8.0 -> 22.13.0 2022-07-31 23:09:55 +00:00
R. Ryantm
b2bbba02ba mafft: 7.490 -> 7.505 2022-07-31 20:32:57 +00:00
Robert Scott
33ab71dafb
Merge pull request #184185 from r-ryantm/auto-update/gama 
gama: 2.19 -> 2.21
 2022-07-31 20:26:06 +01:00
Timo Kaufmann
17a362686e
Merge pull request #184261 from r-ryantm/auto-update/jmol 
jmol: 14.32.45 -> 14.32.66
 2022-07-31 21:11:32 +02:00
R. Ryantm
6714562097 kstars: 3.5.9 -> 3.6.0 2022-07-31 17:44:12 +00:00
R. Ryantm
e0a9011556 last: 1268 -> 1406 2022-07-31 16:58:20 +00:00
R. Ryantm
01098c4dbd jmol: 14.32.45 -> 14.32.66 2022-07-31 15:48:05 +00:00
R. Ryantm
a1680d22df jags: 4.3.0 -> 4.3.1 2022-07-31 15:22:12 +00:00
R. Ryantm
4c3caca96d snakemake: 7.9.0 -> 7.12.0 2022-07-31 11:06:29 -04:00
R. Ryantm
0bba0f15dc gwyddion: 2.60 -> 2.61 2022-07-31 13:37:38 +00:00
Weijia Wang
356ac6d6ae scalp: init at unstable-2022-03-15 2022-07-31 13:28:19 +02:00
R. Ryantm
d9d8cf9c5a getdp: 3.4.0 -> 3.5.0 2022-07-31 09:45:24 +00:00
R. Ryantm
a36984e191 gama: 2.19 -> 2.21 2022-07-31 09:39:15 +00:00
R. Ryantm
f64fdd760b gnuastro: 0.17 -> 0.18 2022-07-31 07:53:52 +00:00
R. Ryantm
c37576257b workcraft: 3.3.6 -> 3.3.8 2022-07-31 06:18:04 +00:00
Anderson Torres
3242a9cab4
Merge pull request #183754 from r-ryantm/auto-update/primecount 
primecount: 7.3 -> 7.4
 2022-07-30 16:01:13 -03:00
Anderson Torres
0dced175d7
Merge pull request #183756 from r-ryantm/auto-update/primesieve 
primesieve: 7.9 -> 8.0
 2022-07-30 15:12:23 -03:00
R. Ryantm
799328334d fricas: 1.3.7 -> 1.3.8 2022-07-30 16:58:18 +00:00
R. Ryantm
bd16430883 emuflight-configurator: 0.4.0 -> 0.4.1 2022-07-30 04:44:30 +00:00
Bobby Rong
ac95058e3c
Merge pull request #183276 from r-ryantm/auto-update/cvc5 
cvc5: 1.0.0 -> 1.0.1
 2022-07-30 10:50:46 +08:00
R. Ryantm
344c2740e1 primesieve: 7.9 -> 8.0 2022-07-29 17:22:15 +00:00
R. Ryantm
faa6e41b2a primecount: 7.3 -> 7.4 2022-07-29 17:15:11 +00:00
R. Ryantm
9338d8c9b7 picard-tools: 2.26.11 -> 2.27.4 2022-07-29 16:12:10 +00:00
R. Ryantm
33d34d205c opensmt: 2.3.1 -> 2.4.1 2022-07-29 14:26:39 +00:00
Mauricio Collares
6105375c1e sageWithDoc: remove deprecation patch, add sphinx 5 update patch 2022-07-28 17:29:53 -03:00
R. Ryantm
8ecdb52267 graphia: 3.0 -> 3.1 2022-07-28 13:49:36 +00:00
R. Ryantm
f238ea8ee8 cvc5: 1.0.0 -> 1.0.1 2022-07-28 10:49:58 +00:00
R. Ryantm
8c0e56fc14 angsd: 0.937 -> 0.938 2022-07-28 07:50:11 +00:00
Ryan Mulligan
8c2abe0837
Merge pull request #182353 from r-ryantm/auto-update/MAVProxy 
mavproxy: 1.8.50 -> 1.8.52
 2022-07-27 20:53:01 -07:00
Justin Bedő
9e80da74b0
Merge pull request #182028 from jbedo/bedops 
bedops: 2.4.40 -> 2.4.41
 2022-07-28 09:14:23 +10:00
Ben Darwin
a39c8ddb1f mcrl2: 201707 -> 202206 2022-07-27 01:25:01 -04:00
Ben Darwin
125da19866 mni_autoreg: unstable-2017-02-22 -> unstable-2022-05-20 2022-07-26 16:03:12 -04:00
Mario Rodas
0f87b2b305
Merge pull request #181123 from avdv/gephi-0.9.6 
gephi: 0.9.2 -> 0.9.6
 2022-07-24 16:08:03 -05:00
Artturi
aeed5a4f93
Merge pull request #179584 from Artturin/fmtupdate 2022-07-22 21:24:12 +03:00
Robert Scott
0b7947c963
Merge pull request #182349 from r-ryantm/auto-update/snakemake 
snakemake: 7.8.5 -> 7.9.0
 2022-07-21 21:35:04 +01:00
Gabriel Ebner
ec71376b1c
Merge pull request #179568 from collares/lean-3.44.1 
lean: 3.43.0 -> 3.45.0
 2022-07-21 19:04:45 +02:00
Mauricio Collares
2646dae16e lean: 3.44.1 -> 3.45.0 2022-07-21 13:03:03 -03:00
Mauricio Collares
b394165a8a lean: 3.44.0 -> 3.44.1 2022-07-21 12:52:30 -03:00
Mauricio Collares
f1fe61ba70 lean: 3.43.0 -> 3.44.0 2022-07-21 12:52:30 -03:00
R. Ryantm
f9881742e3 mavproxy: 1.8.50 -> 1.8.52 2022-07-21 15:34:32 +00:00
R. Ryantm
7a5b52ff26 snakemake: 7.8.5 -> 7.9.0 2022-07-21 15:24:14 +00:00
Bobby Rong
b536142220
Merge pull request #181946 from Luflosi/update/boinc 
boinc: 7.20.1 -> 7.20.2
 2022-07-21 20:01:43 +08:00
Ben Siraphob
0952243f1f
Merge pull request #182056 from jiegec/cvc3-darwin 2022-07-20 23:12:29 -07:00
Jiajie Chen
fa917a6f8c cvc3: unbreak on aarch64-darwin 
Disable stackprotector on aarch64-darwin.
 2022-07-21 08:09:26 +08:00
Dmitry Kalinkin
3518b4ac5a
Merge pull request #182037 from veprbl/pr/root_6_26_04 
root: 6.24.06 -> 6.26.04
 2022-07-20 17:50:18 -04:00
Robert Scott
6d626b5e11
Merge pull request #182062 from jiegec/hal-hardware-analyzer 
hal-hardware-analyzer: fix build with python 3.10
 2022-07-20 19:22:04 +01:00
Winter
dd4fe67ac0
Merge pull request #182038 from natsukium/dssp/init 
dssp: init at 4.0.5
 2022-07-20 01:06:16 -04:00
Jiajie Chen
7519d550fa hal-hardware-analyzer: fix build with python 3.10 
The build fails with Python 3.10. Applied upstream pr to fix it.
 2022-07-20 08:29:28 +08:00
Artturin
9f86e929b0 openroad: 2.0 -> unstable-2022-07-19 2022-07-19 20:48:54 +03:00
Artturin
6b8c65acd9 treewide: fix fallout from 'cmake/setup-hook.sh: Don't skip build-RPATH' 2022-07-19 17:47:13 +03:00
natsukium
cf0dc604a6
dssp: init at 4.0.5 2022-07-19 12:17:34 +09:00
Dmitry Kalinkin
b3df13e2d7
root: 6.24.06 -> 6.26.04 2022-07-18 23:14:15 -04:00
Justin Bedo
99fb9abfaa
bedops: 2.4.40 -> 2.4.41 2022-07-19 09:09:52 +10:00
Luflosi
bf27ab825e
boinc: 7.20.1 -> 7.20.2 
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.20%2F7.20.2
 2022-07-18 14:33:23 +02:00
Vladimír Čunát
250922fd1e
Merge branch 'master' into staging-next 2022-07-18 08:29:53 +02:00
7c6f434c
03eff4d99f
Merge pull request #178456 from collares/eclib-20220621 
eclib: 20210625 -> 20220621
 2022-07-18 04:46:58 +00:00
7c6f434c
2a41e4f33c
Merge pull request #181071 from collares/nauty-2.7r4 
nauty: 2.7r3 -> 2.7r4
 2022-07-18 04:46:35 +00:00
Nikolay Korotkiy
367bae1a8c
stellarium: 0.22.1 → 0.22.2 2022-07-17 18:48:18 +03:00
Sandro
e59f65caf8
Merge pull request #163964 from yuuyins/strictdoc 
strictdoc: init at 0.0.26
 2022-07-17 16:45:12 +02:00
K900
0ff0b14968 treewide: more cmake rpath fixups 2022-07-17 17:42:15 +03:00
yuu
7b560da1dc
strictdoc: init at 0.0.26 
Co-authored-by: Sandro Jäckel <sandro.jaeckel@gmail.com>
Co-authored-by: Jonathan Ringer <jonringer117@gmail.com>
 2022-07-16 19:19:32 -03:00
Vladimír Čunát
0879ac5da6
Merge branch 'master' into staging-next 2022-07-16 20:07:05 +02:00
Ben Siraphob
68c9333eb4
Merge pull request #176321 from siraben/smtcoq-fix 2022-07-16 09:27:57 -07:00
Ben Siraphob
49414ca907
Merge pull request #181622 from siraben/formula-mainprogram 2022-07-16 08:54:08 -07:00
Mario Rodas
279e1daf20
Merge pull request #180821 from r-ryantm/auto-update/nextinspace 
nextinspace: 2.0.3 -> 2.0.5
 2022-07-16 09:46:22 -05:00
Mario Rodas
ce3b7f17e6
Merge pull request #181078 from r-ryantm/auto-update/gmsh 
gmsh: 4.10.4 -> 4.10.5
 2022-07-16 09:13:37 -05:00
Lassulus
01853c3bcc
Merge pull request #174547 from r-ryantm/auto-update/delly 
delly: 0.9.1 -> 1.0.3
 2022-07-16 10:49:50 +02:00
github-actions[bot]
fa96a4fa79
Merge master into staging-next 2022-07-16 00:02:26 +00:00
yuuyins
877edc57d5
jflap: refactoring, add xdg desktop item (#173905) 
Co-authored-by: Sandro Jäckel <sandro.jaeckel@gmail.com>
 2022-07-16 01:39:21 +02:00
Pascal Wittmann
26ddf3454a
Merge pull request #138255 from natsukium/mafft/init 
mafft: init at 7.487
 2022-07-16 00:54:59 +02:00
Ben Siraphob
0a0006a9d8
formula: add mainProgram 2022-07-15 11:41:08 -07:00
github-actions[bot]
9f53d5cc15
Merge master into staging-next 2022-07-15 18:01:23 +00:00
Aiken Cairncross
d73e58de0a
vhd2vl: Fix executable name (#177493) 
* vhd2vl: Fix executable name

* vhd2vl: Fix tests

This partially reverts commit 5d44c9a222.
 2022-07-15 16:22:23 +02:00
Artturin
a584822577 treewide: fix fallout from 'cmake/setup-hook.sh: Don't skip build-RPATH' 
f7414e2
 2022-07-15 02:50:09 +03:00
thyol
0d6e3afdba diamond: update metadata 2022-07-13 12:33:33 +02:00
thyol
55853ae096 maintainers: add thyol 2022-07-13 12:30:44 +02:00
thyol
4e79b5e370 diamond: remove patch 2022-07-13 11:58:39 +02:00
thyol
5e765ecc68 diamond: 0.8.36 -> 2.0.15 2022-07-13 11:58:02 +02:00
Vladimír Čunát
8169a7fce0
Merge branch 'master' into staging-next 2022-07-13 09:57:41 +02:00
Rick van Schijndel
f73ff47ca9
Merge pull request #174451 from r-ryantm/auto-update/nengo-gui 
nengo-gui: 0.4.8 -> 0.4.9
 2022-07-12 23:25:08 +02:00
Artturin
83b4764dc3 treewide: fix fallout from 'cmake/setup-hook.sh: Don't skip build-RPATH' 
f7414e2b3a
 2022-07-12 18:25:19 +03:00
Jonas Heinrich
2349dd5cb2 graphia: 2.2 -> 3.0 2022-07-12 10:01:03 -04:00
Sandro
8785153a13
Merge pull request #180450 from wegank/lp_solve-aarch64-darwin 2022-07-12 14:56:55 +02:00
github-actions[bot]
5f2ff17a45
Merge master into staging-next 2022-07-11 18:01:16 +00:00
Thomas Tuegel
e1e0d5d513
Merge pull request #108496 from knedlsepp/cmake-rpath 
cmake/setup-hook.sh: Don't skip build-RPATH
 2022-07-11 10:18:47 -05:00
Claudio Bley
16a1651a4a gephi: 0.9.2 -> 0.9.6 
Gephi now requies Java 11+.
 2022-07-11 16:45:30 +02:00
Bobby Rong
13a310dc59
Merge pull request #180296 from r-ryantm/auto-update/bada-bib 
bada-bib: 0.6.2 -> 0.7.2
 2022-07-11 20:44:36 +08:00
R. Ryantm
76e20e84b6 gmsh: 4.10.4 -> 4.10.5 2022-07-11 10:54:53 +00:00
Mauricio Collares
b9854d669e nauty: 2.7r3 -> 2.7r4 2022-07-11 11:53:32 +02:00
Mauricio Collares
55a53e1dec sage: apply eclib 20220621 update patch 2022-07-11 10:53:15 +02:00
Bobby Rong
06e537ad60
bada-bib: add missing libadwaita and gtksourceview5 dependency 2022-07-11 13:46:57 +08:00
7c6f434c
c196afc04e
Merge pull request #180675 from collares/singular-4.3.1 
singular: 4.3.0 -> 4.3.1
 2022-07-10 23:22:38 +00:00
Théo Zimmermann
3ea8ed7d7e Split out CoqIDE by default when Coq >= 8.14. 2022-07-10 15:49:44 +02:00
Rick van Schijndel
654cb9069b
Merge pull request #180920 from smancill/gaw-platforms 
gaw: mark as Linux-only
 2022-07-10 13:45:01 +02:00
Sebastián Mancilla
fdfd961ee1 gaw: mark as Linux-only 
The error when building on Darwin is:

    sockcon.c:19:10: fatal error: 'linux/tcp.h' file not found

So, it uses Linux-specific headers.
 2022-07-09 23:34:54 -04:00
Sebastián Mancilla
9df44cc540 ginac: mark as unbroken on darwin 
Marked as broken by #173671 but builds and works fine on darwin, with
sandbox enabled.
 2022-07-09 22:58:48 -04:00
R. Ryantm
58d35e01aa nextinspace: 2.0.3 -> 2.0.5 2022-07-09 07:19:07 +00:00
Anderson Torres
e7c3f2b4de
Merge pull request #180535 from wegank/nvc-init 
nvc: init at 1.6.2
 2022-07-08 21:21:59 -03:00
Jannik Vierling
abf573a0c7 metis-prover: 2.3.20160713 -> 2.4.20200713 2022-07-08 22:22:33 +02:00
Théo Zimmermann
1014f00cff Prepare Coq derivation for Coq 8.17 build infrastructure. 2022-07-08 14:54:04 +02:00
R. Ryantm
4f64659d54 fast-downward: 21.12.0 -> 22.06.0 2022-07-08 09:59:52 +00:00
Mauricio Collares
bc41a593a5 singular: 4.3.0 -> 4.3.1 2022-07-08 11:24:03 +02:00
Weijia Wang
22c2fef365 nvc: init at 1.6.2 2022-07-08 07:22:45 +02:00
R. Ryantm
5ea1c721e1 delly: 0.9.1 -> 1.0.3 2022-07-07 22:10:48 +00:00
Jonas Heinrich
fc4b3a846d
klee: 2.2 -> 2.3 
* klee: 2.2 -> 2.3
 2022-07-07 09:18:27 -03:00
Weijia Wang
a64e151d26 lp_solve: fix build on aarch64-darwin 2022-07-07 09:59:39 +02:00
Rick van Schijndel
5cbfadba69
Merge pull request #178552 from jiegec/gtkwave-darwin 
gtkwave: support darwin build
 2022-07-07 09:04:12 +02:00
Justin Bedő
e120ef6a5a
Merge pull request #180294 from NixOS/r-updates 
R 4.2.0 -> 4.2.1 and bump package set
 2022-07-06 15:43:09 +10:00
R. Ryantm
4975868d54 bada-bib: 0.6.2 -> 0.7.2 2022-07-06 00:52:29 +00:00
R. RyanTM
200d8c500a
snakemake: 7.8.3 -> 7.8.5 (#179874) 2022-07-04 12:24:26 -04:00
Bobby Rong
be77a35772
Merge pull request #179905 from Luflosi/update/boinc 
boinc: 7.20.0 -> 7.20.1
 2022-07-04 21:26:48 +08:00
Sergei Trofimovich
8aaed36df3 archimedes: use latest toolchain, not gcc-6 
Without the change archimedes fails to build with latest toolchains as:

    ld: archimedes.c:(.text+0xdac7): undefined reference to `rnd'
    ld: archimedes.c:(.text+0xdeab): undefined reference to `rnd'
    ld: archimedes.c:(.text+0xdf13): undefined reference to `rnd'
    ld: archimedes.c:(.text+0xe3ef): undefined reference to `rnd'
    ld: archimedes.o:archimedes.c:(.text+0xe456): more undefined references to `rnd' follow
    ld: archimedes.o: in function `EMC':
    archimedes.c:(.text+0xf11b): undefined reference to `creation'
    ld: archimedes.c:(.text+0xf5f5): undefined reference to `creation'
    ld: archimedes.c:(.text+0xf826): undefined reference to `creation'
    ld: archimedes.c:(.text+0xf9ce): undefined reference to `creation'

The change happens to fix build against clang as well.
 2022-07-04 08:20:07 +01:00
Josef Kemetmüller
bcd7045998 treewide: Remove now-unneeded LD_LIBRARY_PATH in cmake derivations 
Since the setting DCMAKE_SKIP_BUILD_RPATH was disabled, we can now run
the checkPhase of cmake derivations without having to tweak the
LD_LIBRARY_PATH anymore.
 2022-07-04 03:49:01 +03:00
Josef Kemetmüller
1ca04aa9f1 treewide: Stop setting CMAKE_SKIP_BUILD_RPATH=OFF 
This is now the new default and thus doesn't need to be set manually
anymore.
 2022-07-04 03:49:01 +03:00
Ben Wolsieffer
8927d4d9e7 qgroundcontrol: 4.2.1 -> 4.2.3 2022-07-03 17:39:00 -04:00
tilcreator
61f6ac995d qgroundcontrol: Fix gst dependencies 2022-07-03 13:27:12 +02:00
Luflosi
6eea86625e
boinc: 7.20.0 -> 7.20.1 
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.20%2F7.20.1
 2022-07-02 15:56:06 +02:00
Sandro Jäckel
a2dfde58bc
Revert "sage: link doc in jupyter kernel" 
This reverts commit 9a409fc502.
 2022-07-01 19:41:35 +02:00
7c6f434c
3614186dd6
Merge pull request #178895 from collares/sage-notebook 
sage: depend on python3Packages.notebook
 2022-07-01 16:43:34 +00:00
7c6f434c
95d4ce2175
Merge pull request #164048 from hqurve/jupyter-extra-paths 
Jupyter kernel: link extra paths and fix missing docs in sagemath jupyter
 2022-07-01 16:43:02 +00:00
Bobby Rong
54503f0e7f
Merge pull request #178505 from evils/kicad-unstable 
kicad-unstable: 2022-05-06 -> 2022-06-21
 2022-06-30 19:58:26 +08:00
Bobby Rong
f99a7033ff
Merge pull request #178501 from evils/kicad-6.0.6 
kicad: 6.0.5 -> 6.0.6
 2022-06-30 19:45:21 +08:00
ajs124
0aac41a5d9 maintainers: remove winden 
no github account linked
 2022-06-29 00:52:14 +02:00
ajs124
3b5f125515 maintainers: remove metabar 
no github account + only commit is 78c052e91a
 2022-06-29 00:52:13 +02:00
ajs124
91b724c66d maintainers: remove danharaj 
github account deleted
 2022-06-29 00:52:13 +02:00
Mario Hros
0570ae054a openboardview: init at 9.0.3 2022-06-27 20:48:38 +02:00
Giacomo
22bccbcd97
Update perseus 
delete space
 2022-06-27 10:08:55 +02:00
Jiajie Chen
0aec6813da gtkwave: support darwin build 
Import two upstream commits to fix compilation under darwin
 2022-06-27 15:58:49 +08:00
github-actions[bot]
b1e76b5db1
Merge master into staging-next 2022-06-27 00:02:25 +00:00
Giacomo
cd52b6d893
Update 
delete mrbitt maintainers
 2022-06-27 00:27:46 +02:00
Giacomo
923e4415d2
Update perseus 
add space in line 17
 2022-06-26 23:50:03 +02:00
Giacomo
1639e10d34
Update perseus 
new   url --> http://people.maths.ox.ac.uk/nanda/perseus/index.html
add   NIX_CFLAGS_COMPILE = [ "-std=c++14" ];  # Otherwise it does not compile
 2022-06-26 23:35:42 +02:00
Mario Rodas
c79d9826da
Merge pull request #179128 from r-ryantm/auto-update/gmsh 
gmsh: 4.10.2 -> 4.10.4
 2022-06-26 16:33:01 -05:00
Ivv
f3b81e3229
Merge pull request #178481 from siraben/formula-update 
formula: update, add update script and unbreak darwin
 2022-06-26 21:10:36 +02:00
github-actions[bot]
d77dd87222
Merge master into staging-next 2022-06-26 12:01:16 +00:00
Bobby Rong
5837cc7d69
Merge pull request #165866 from r-ryantm/auto-update/ginac 
ginac: 1.8.2 -> 1.8.3
 2022-06-26 16:47:17 +08:00
R. Ryantm
6b4e69e7e4 gmsh: 4.10.2 -> 4.10.4 2022-06-26 00:27:54 +00:00
github-actions[bot]
aa36d9ee78
Merge master into staging-next 2022-06-26 00:02:17 +00:00
Doron Behar
07328220b6
mathematica: set QT_QPA_PLATFORM to xcb (#178991) 2022-06-25 18:17:44 +00:00
github-actions[bot]
62b079eb5d
Merge master into staging-next 2022-06-25 12:01:16 +00:00
Martin Weinelt
2031ca4a25
Merge pull request #178569 from eintim/betaflight-configurator 2022-06-25 12:24:50 +02:00
Mauricio Collares
f025b2340b sage: depend on python3Packages.notebook 2022-06-25 08:25:32 +02:00
Justin Bedo
8f1e861f4b
R: 4.2.0 -> 4.2.1 2022-06-25 09:00:28 +10:00
Will Dietz
d926f00526 verilator: 4.222 -> 4.224 
https://github.com/verilator/verilator/blob/v4.224/Changes
 2022-06-24 12:26:25 -05:00
github-actions[bot]
5b9ee17283
Merge master into staging-next 2022-06-24 00:02:29 +00:00
Lassulus
c58d141dcc
Merge pull request #177268 from Luflosi/update/boinc 
boinc: 7.18.1 -> 7.20.0
 2022-06-23 21:14:33 +02:00
Rick van Schijndel
c100196b08
Merge pull request #176823 from risicle/ris-native-source-provenance-applications 
treewide/applications: add `sourceType` `binaryNativeCode` for many packages
 2022-06-23 20:55:09 +02:00
github-actions[bot]
4f79f81d47
Merge master into staging-next 2022-06-23 18:01:15 +00:00
Robert Scott
070028a960 fahcontrol: remove autoPatchelfHook argument 
this is confusing as it is not used - the package .deb only contains
python (and bash)
 2022-06-23 18:38:23 +01:00
Robert Scott
466c2e342a treewide/applications: add sourceType binaryNativeCode for many packages 2022-06-23 18:38:19 +01:00
Shea Levy
c4f2260cdb
isabelle: Fix build on darwin 2022-06-23 13:24:53 -04:00
Shea Levy
4d781f329d
z3_4_4_0: Fix build on darwin. 2022-06-23 12:40:46 -04:00
Ben Siraphob
354c51a748
formula: unmark as broken on darwin 2022-06-22 17:04:55 -07:00
Ben Siraphob
c76653603c
formula: unstable-2022-02-02 -> unstable-2022-06-20 2022-06-22 17:04:55 -07:00
Ben Siraphob
7071d43fd3
formula: add update script 2022-06-22 17:04:53 -07:00
github-actions[bot]
506a80a667
Merge staging-next into staging 2022-06-23 00:02:43 +00:00
Hernan Rajchert
ef22f5fd93
veriT: Fix build on macos 2022-06-22 16:57:33 -03:00
eintim
0b84278e00 betaflight-configurator: 10.7.2 -> 10.8.0 2022-06-22 14:19:19 +02:00
github-actions[bot]
30c9243acc
Merge staging-next into staging 2022-06-22 00:03:15 +00:00
Evils
6a66c08222 kicad-unstable: 2022-05-06 -> 2022-06-21 
contains fix for upstream issue 9888 (intermittent test failure)
 2022-06-22 00:11:15 +02:00
R. Ryantm
671aeb2769 snakemake: 7.8.2 -> 7.8.3 2022-06-21 19:01:53 +00:00
Evils
a746fa431d kicad: 6.0.5 -> 6.0.6 2022-06-21 20:36:17 +02:00
github-actions[bot]
8fe94dceb1
Merge staging-next into staging 2022-06-21 06:02:15 +00:00