Markus Kowalewski
c109aaa5cb
quantum-espresso: remove outdated makefile fix
2019-04-03 15:00:17 +02:00
markuskowa
126e1f8fd0
Merge pull request #58538 from bzizou/stacks
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stacks: init at 2.3e
2019-04-03 14:41:00 +02:00
Bruno Bzeznik
e7899d2a00
stacks: init at 2.3e
2019-04-03 14:01:32 +02:00
R. RyanTM
882247fc3f
quantum-espresso: 6.3 -> 6.4
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/quantum-espresso/versions
2019-04-02 15:30:36 -07:00
Timo Kaufmann
69555825f8
eclib: 20180815 -> 20190226 ( #58801 )
...
Needs a sage patch, see
https://trac.sagemath.org/ticket/27360 .
2019-04-02 15:39:20 +00:00
Sébastien Maret
806a3fa2e6
gildas: 20190301_b -> 20190401_a
2019-04-02 09:04:39 +02:00
R. RyanTM
5f4e5553bc
jmol: 14.29.31 -> 14.29.32 ( #58698 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
2019-04-01 20:12:53 +00:00
John Ericson
4ccb74011f
Merge commit '18aa59b0f26fc707e7313f8467e67159e61600c2' from master into staging
...
There was one conflict in the NixOS manual; I checked that it still
built after resolving it.
2019-04-01 00:40:03 -04:00
markuskowa
c637aeff19
Merge pull request #58541 from luispedro/add_megahit
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megahit: init at 1.1.4
2019-03-31 12:51:59 +02:00
Luis Pedro Coelho
bf48451959
megahit: init at 1.1.4
...
This is widely used in bioinformatics for assembling genomes &
metagenomes
2019-03-31 05:56:14 +02:00
Dmitry Kalinkin
ea757ac59f
Merge pull request #58108 from veprbl/pr/root5_fix
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root5: fix build
2019-03-30 22:36:23 -04:00
R. RyanTM
893abe12e8
bowtie2: 2.3.4.3 -> 2.3.5 ( #58014 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
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2019-03-31 00:37:38 +01:00
Silvan Mosberger
aadb1cbe26
Merge pull request #58494 from markuskowa/upd-octopus
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octopus: 8.3 -> 8.4
2019-03-29 20:43:28 +01:00
markuskowa
7701fd7603
Merge pull request #58097 from r-ryantm/auto-update/ginac
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ginac: 1.7.4 -> 1.7.5
2019-03-29 20:27:39 +01:00
Silvan Mosberger
030b845413
Merge pull request #58492 from markuskowa/upd-molden
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molden: 5.9.3 -> 5.9.5
2019-03-29 20:16:08 +01:00
geistesk
5e6273df68
stellarium: 0.18.3 -> 0.19.0
2019-03-28 21:21:54 +01:00
markuskowa
403aa2dfed
Merge pull request #58180 from luzpaz/gmsh4.2.2
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gmsh 4.2.1->4.2.2
2019-03-28 18:11:58 +01:00
Markus Kowalewski
3c19324e2a
octopus: 8.3 -> 8.4
2019-03-28 18:00:41 +01:00
Markus Kowalewski
6ea9c0243b
molden: 5.9.3 -> 5.9.5
2019-03-28 17:39:15 +01:00
R. RyanTM
2ce544a8b1
minimap2: 2.15 -> 2.16 ( #57319 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/minimap2/versions
2019-03-27 23:25:52 +01:00
R. RyanTM
1b73fd1954
paml: 4.9h -> 4.9i ( #57354 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/paml/versions
2019-03-27 15:44:21 +01:00
Bruno Bzeznik
00431493c0
itsx: init at 1.1.1
2019-03-26 15:52:35 +01:00
Bruno Bzeznik
6858d0fd62
clustal-omega: init at 1.2.4
2019-03-26 15:45:59 +01:00
Joachim F
c9cd1356ea
Merge pull request #56522 from bzizou/messer-slim
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messer-slim: init at 3.2.1
2019-03-26 00:42:58 +00:00
Dmitry Kalinkin
9ba406ff1c
kicad: replace with3DPackages option with an override
2019-03-24 01:37:47 -04:00
Dmitry Kalinkin
d0fc807347
kicad: make module list overridable
...
This moves module definition into passthru. Otherwise building kicad
would still require all modules to be built first even if they are not
used.
Also this drops preferLocalBuild from packages3d. hydraPlatforms should
do what we need to. preferLocalBuild would addtitionaly disable remote
builders, which is probably not what we want.
2019-03-24 01:37:46 -04:00
Gabriel Ebner
4446452347
Merge pull request #58163 from dtzWill/update/qalculate-3
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libqalculate,qalculate-gtk: 2.9.0 -> 3.0.0
2019-03-23 18:50:24 +01:00
luz.paz
13158c692c
gmsh 4.2.1->4.2.2
2019-03-23 12:51:12 -04:00
markuskowa
b10799905c
Merge pull request #58162 from r-ryantm/auto-update/gromacs
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gromacs: 2019 -> 2019.1
2019-03-23 12:29:48 +01:00
Frederik Rietdijk
23e431387b
Merge staging-next into staging
2019-03-23 09:20:09 +01:00
Will Dietz
24484b216a
qalculate-gtk: 2.9.0 -> 3.0.0
...
http://qalculate.github.io/news.html
2019-03-23 01:09:17 -05:00
R. RyanTM
c70807aa13
gromacs: 2019 -> 2019.1
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gromacs/versions
2019-03-22 22:05:26 -07:00
Gabriel Ebner
11318d1ba2
elan: 0.7.4 -> 0.7.5
2019-03-22 11:16:44 +01:00
Jörg Thalheim
70d6db9097
Merge pull request #58065 from r-ryantm/auto-update/eagle
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eagle: 9.1.2 -> 9.3.1
2019-03-22 07:22:58 +00:00
Wael M. Nasreddine
5af0780492
Merge remote-tracking branch 'origin/master' into staging
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* origin/master: (693 commits)
buildGoModule: use go_1_12 instead of go_1_11 (#58103 )
gitAndTools.lab: 0.15.2 -> 0.15.3 (#58091 )
signal-desktop: 1.22.0 -> 1.23.0
added missing semicolon to documentation
terminus_font_ttf: 4.46.0 -> 4.47.0
buildGoModule: remove SSL env vars in favor of cacert in buildInputs (#58071 )
dav1d: init at 0.2.1
dropbox-cli: 2018.11.28 -> 2019.02.14
atlassian-confluence: 6.14.1 -> 6.14.2
maintainers: update email for dywedir
python.pkgs.hglib: use patch to specify hg path (#57926 )
chkrootkit: 0.52 -> 0.53
radare2-cutter: 1.7.2 -> 1.8.0
autorandr: 1.7 -> 1.8
pythonPackages.pyhepmc: fix build
llvm-polly/clang-polly: use latest llvm
apulse: 0.1.11.1 -> 0.1.12, cleanup
factorio: experimental 0.17.14 → 0.17.16 (#58000 )
sequeler: 0.6.7 -> 0.6.8
nasc: 0.5.1 -> 0.5.2
...
2019-03-21 21:01:25 -07:00
R. RyanTM
34cba0b001
ginac: 1.7.4 -> 1.7.5
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ginac/versions
2019-03-21 17:54:31 -07:00
R. RyanTM
6c14a2f3f8
eagle: 9.1.2 -> 9.3.1
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eagle/versions
2019-03-21 10:40:06 -07:00
worldofpeace
0353967957
nasc: 0.5.1 -> 0.5.2
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Main improvment is that libqalculatenasc.so is now properly linked
Changelog: https://github.com/parnold-x/nasc/compare/0.5.1...0.5.2
2019-03-20 23:10:33 -04:00
Gabriel Ebner
52c3ee6c4d
elan: 0.7.2 -> 0.7.4
2019-03-20 13:33:24 +01:00
Dmitry Kalinkin
c36f841ec7
root5: fix build
2019-03-20 00:26:13 -04:00
Timo Kaufmann
5fc5881221
sage: backport bugfix ( #57794 )
2019-03-17 14:36:01 +00:00
Timo Kaufmann
8fc3c033cb
pynac: 0.7.23 -> 0.7.24 ( #57791 )
...
Apparently some python3 related fixes: https://trac.sagemath.org/ticket/27241
Also switch to using pname.
2019-03-17 14:35:28 +00:00
Stephen
a14a7d958f
labelimg: fix build ( #57714 )
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for #56826 see https://hydra.nixos.org/build/90477186/nixlog/2
2019-03-15 20:50:03 +01:00
Thibaut Marty
2f5439a950
kicad: fix #49089 by adding libraries files
...
This splits the KiCad package in several derivations:
- original package (main KiCad package)
- internationalization package
- templates
- schematic symbols libraries
- PCB footprints libraries
- 3D models libraries
From these derivations, 2 packages are exposed in top level:
- `kicad` (main KiCad package + all libraries except 3D models)
- `kicad-with-3dpackages` (kicad + all libraries)
The 3D models can also be installed separately with `kicad.packages3d`.
This prevents a new compilation of KiCad, but the user must set the
`KISYS3DMOD` environment variable or option accordingly.
2019-03-14 21:07:38 +01:00
Dmitry Kalinkin
d5f97ae600
Merge pull request #57650 from stephengroat/patch-4
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apmplanner2: fix build
2019-03-14 15:28:57 -04:00
Alex Branham
1e354a7e40
R: 3.5.2 -> 3.5.3
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Closes https://github.com/NixOS/nixpkgs/pull/57400 .
2019-03-14 19:50:37 +01:00
Stephen
08e4d7cf69
apmplanner2: fix build
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see ArduPilot/apm_planner#1166
2019-03-14 11:23:20 -07:00
Gabriel Ebner
be261a1ede
isabelle: refactor
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Fixes #33337
2019-03-14 11:48:30 +01:00
Gabriel Ebner
308456a7a7
Merge pull request #57567 from gebner/isabelle-2018
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isabelle: 2017 -> 2018
2019-03-14 11:25:02 +01:00
Gabriel Ebner
c7f43de43c
isabelle: 2017 -> 2018
2019-03-12 14:32:48 +01:00
Sébastien Maret
6f81adb7ee
gildas: 20190301_a -> 20190301_b
2019-03-11 21:43:41 +01:00
Matthew Bauer
37eba81c7b
Merge pull request #56391 from matthewbauer/cmake-treewide
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Add more CMake flags
2019-03-11 12:43:46 -04:00
Matthew Bauer
6ed49262f5
treewide: remove BUILD_TESTING flag
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This is now set by CMake
2019-03-11 10:11:28 -04:00
worldofpeace
988ed26778
Merge pull request #57363 from r-ryantm/auto-update/picard-tools
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picard-tools: 2.18.25 -> 2.18.27
2019-03-11 07:13:20 -04:00
R. RyanTM
70815de29c
picard-tools: 2.18.25 -> 2.18.27
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
2019-03-11 03:37:34 -07:00
Peter Hoeg
136126ceae
Merge pull request #56498 from ariutta/patch-1
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cytoscape: bump 3.6.1 -> 3.7.1
2019-03-11 11:20:50 +08:00
Timo Kaufmann
ce96994032
sage: fix docbuild ( #57294 )
...
The docbuild (or rather its tests) failed because sphinx built some
English parts of the documentation in Russian. The added debian patch
fixes that by isolating docbuilding threads in sphinx using
proper subprocesses.
2019-03-10 21:42:54 +00:00
Timo Kaufmann
3b7fb15182
Merge pull request #57126 from timokau/sage-maxima-downgrade
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sage: downgrade maxima to 5.41
2019-03-09 20:05:01 +00:00
Timo Kaufmann
23908a0ee3
sage: downgrade maxima to 5.41
...
See discussion at
82254747af
.
2019-03-09 17:23:57 +01:00
Silvan Mosberger
8ca1c925c6
sad: Fix build
2019-03-09 01:07:18 +01:00
luz.paz
77cb537712
gmsh: 4.1.5 -> 4.2.1
2019-03-08 05:24:15 -05:00
Timo Kaufmann
e2b287b32a
maxima: remove ecl known-failures patch
...
It doesn't apply anymore since the recent update. Since the testsuite is
completely disabled now, there is little point in rebasing it.
2019-03-07 16:08:10 +01:00
Ryan Mulligan
5896677b47
Merge pull request #56956 from smaret/gildas
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gildas: 20190201_b -> 20190301_a
2019-03-06 19:28:41 -08:00
Sébastien Maret
880d0ac9f0
gildas: 20190201_b -> 20190301_a
2019-03-06 13:56:17 +01:00
Jörg Thalheim
9b57d852af
Merge pull request #56905 from timokau/pari-fix
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pari: fix off-by-one error
2019-03-06 11:00:07 +00:00
Jan Tojnar
d3ff902e94
webkit: move to aliases
2019-03-06 00:20:55 +01:00
Timo Kaufmann
a648b8c714
pari: fix off-by-one error
...
Done by applying upstream patch. Will be included in the next release.
Upstream: https://pari.math.u-bordeaux.fr/cgi-bin/bugreport.cgi?bug=2117
2019-03-05 21:50:44 +01:00
Timo Kaufmann
00fa98f012
pari: add timokau as maintainer
...
I'm mostly interested in this package because it is a dependency of
sage. I'd like to be notified on changes (which ofBorg will do when I'm
listed as a maintainer).
2019-03-05 20:23:04 +01:00
Timo Kaufmann
5a23cb575e
pari: slight refactoring
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Use pname, one line per argument.
2019-03-05 20:21:26 +01:00
Peter Simons
1c6a193b3e
wxmaxima: update to version 19.03.0
2019-03-05 12:53:05 +01:00
Peter Simons
82254747af
maxima: update to version 5.42.2
2019-03-05 12:53:04 +01:00
Dmitry Kalinkin
aa4f5cc4a3
simgrid: Fix the upstream project URL
...
Closes : #56849
2019-03-04 16:42:46 -05:00
R. RyanTM
27e05d81a5
star: 2.7.0a -> 2.7.0c
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/star/versions
2019-03-03 20:55:25 +01:00
R. RyanTM
6a987f5730
form: 4.2.0 -> 4.2.1
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/form/versions
2019-03-03 20:49:36 +01:00
R. RyanTM
9989b7c8c4
igv: 2.4.17 -> 2.4.19
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/igv/versions
2019-03-03 20:48:52 +01:00
Timo Kaufmann
37182b20a6
Merge pull request #56781 from timokau/sage-python-upgrade-fixes
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Sage python upgrade fixes
2019-03-03 20:48:10 +01:00
R. RyanTM
2d20e8c5f2
gtkwave: 3.3.98 -> 3.3.99
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gtkwave/versions
2019-03-03 17:13:47 +01:00
Timo Kaufmann
9e3754786b
sage: fix strictDeps fallout
...
See https://github.com/NixOS/nixpkgs/pull/54182 and
https://github.com/NixOS/nixpkgs/pull/55757 .
2019-03-03 13:25:40 +01:00
Timo Kaufmann
2de81ee78f
sage: patch for pip 19
...
pip 19 introduced a deprecation warning for python 2.7. Since sage
internally uses pip to query for installed packages, this deprecation
warning will show up at unexpected times. That is ugly and messes with
the testsuite.
Upstream: https://trac.sagemath.org/ticket/27405
2019-03-03 13:21:22 +01:00
R. RyanTM
4f1c44906c
cryptominisat: 5.6.6 -> 5.6.8
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/cryptominisat/versions
2019-03-01 16:58:38 -08:00
R. RyanTM
e869b87dbb
clp: 1.16.11 -> 1.17.0
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/clp/versions
2019-03-01 16:08:32 -08:00
Frederik Rietdijk
2fcb11a244
Merge staging-next into master
2019-03-01 09:06:20 +01:00
Bruno Bzeznik
598f11862c
messer-slim: init at 3.2.1
2019-02-28 15:11:18 +01:00
Anders Riutta
c792fd107b
cytoscape: bump 3.6.1 -> 3.7.1
...
Needed to update URL, because `wget "http://chianti.ucsd.edu/cytoscape-3.7.1/cytoscape-3.7.1.tar.gz "` returns `404`.
2019-02-27 16:40:50 -08:00
John Ericson
8293ab8461
Merge pull request #56408 from Mic92/runtime-shell
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treewide: use runtimeShell instead of stdenv.shell whenever possible
2019-02-26 18:04:27 -05:00
Jörg Thalheim
dadc7eb329
treewide: use runtimeShell instead of stdenv.shell whenever possible
...
Whenever we create scripts that are installed to $out, we must use runtimeShell
in order to get the shell that can be executed on the machine we create the
package for. This is relevant for cross-compiling. The only use case for
stdenv.shell are scripts that are executed as part of the build system.
Usages in checkPhase are borderline however to decrease the likelyhood
of people copying the wrong examples, I decided to use runtimeShell as well.
2019-02-26 14:10:49 +00:00
Merlin Göttlinger
5781856630
clprover: init at 1.0.3 ( #56403 )
...
* clprover: init at 1.0.3
2019-02-26 12:36:04 +00:00
Vincent Laporte
4266523c14
why3: 1.1.1 -> 1.2.0
2019-02-25 10:09:15 +01:00
Sophie Taylor
59338fb99d
Fix sc2-headless map hash ( #56320 )
2019-02-25 01:08:12 +01:00
Vladimír Čunát
71f4ba29a3
Merge branch 'master' into staging-next
...
Hydra nixpkgs: ?compare=1506218
2019-02-22 17:51:01 +01:00
markuskowa
0b00338eb9
Merge pull request #56178 from luzpaz/gmsh-4.1.5
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gmsh: 4.1.3 -> 4.1.5
2019-02-22 11:26:15 +01:00
Sophie Taylor
c736f9693d
Added maps to sc2-headless
2019-02-22 09:01:00 +00:00
luz.paz
add7b20858
gmsh: 4.1.3 -> 4.1.5
2019-02-21 22:55:48 -05:00
Frederik Rietdijk
5871da418f
Merge staging into python-unstable
2019-02-21 08:02:10 +01:00
Frederik Rietdijk
e2cd07b997
Merge staging-next into staging
2019-02-21 07:54:33 +01:00
Matthew Bauer
b1bbd94bb6
Merge remote-tracking branch 'NixOS/master' into staging
2019-02-18 20:36:48 -05:00
Ryan Mulligan
f56693f25a
Merge pull request #55052 from smaret/gildas-update
...
gildas: 20190101_b -> 20190201_b
2019-02-17 06:46:15 -08:00
Frederik Rietdijk
04f051d79f
spyder: 3.2.8 -> 3.3.3
2019-02-17 14:40:54 +01:00
Frederik Rietdijk
4b2336ea28
python.pkgs.caffe: fix build, closes #8749
2019-02-17 10:13:22 +01:00
Gabriel Ebner
7cbc76a3e6
Merge branch 'auto-update/qalculate-gtk'
2019-02-16 17:25:47 +01:00
Frederik Rietdijk
fd48a94b62
Merge staging-next into staging
2019-02-16 09:30:46 +01:00
Frederik Rietdijk
6fe10d2779
Merge master into staging-next
2019-02-16 09:29:54 +01:00
R. RyanTM
ef405c5b67
qalculate-gtk: 2.8.2 -> 2.9.0
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/qalculate-gtk/versions
2019-02-15 11:39:04 -08:00
Sébastien Maret
a69d2c2e69
gildas: 20190201_a -> 20190201_b
2019-02-15 13:27:57 +01:00
Timo Kaufmann
9243e85fbc
sage: fix fetchSageDiff ( #55783 )
...
For some reason I changed it to use `cgit`s `rawdiff` instead of `patch`
in the update to sage 8.6. Probably commited that by accident, at least
I can't remember the reason. Also changed the excludes filter, the
leading slash prevented it from working.
As a result, the cypari2 patch changed. Only didn't notice because it
was cached.
Fixes #55780
2019-02-14 21:48:03 +01:00
Samuel W. Flint
52a7c4e30e
z3: Patch file to get rid of python error
...
See #55591 , Z3Prover/z3#2131
2019-02-14 10:11:15 -06:00
Frederik Rietdijk
a25d48cd4f
Merge master into staging
2019-02-14 11:35:50 +01:00
Jan Tojnar
606ceda352
gnome3: stop using aliases
2019-02-14 02:31:15 +01:00
Michael Bishop
ac29d96d25
Merge pull request #55629 from spacekitteh/patch-30
...
Add maps to SC2
2019-02-13 19:13:14 -04:00
Michael Raskin
8384cfe455
Merge pull request #55129 from oxij/tree/move-defaults-to-package-files
...
all-packages.nix: move defaults to package files
2019-02-13 20:04:08 +00:00
Frederik Rietdijk
7257dedd7c
Merge master into staging-next
2019-02-13 12:33:29 +01:00
Sophie Taylor
744e344171
Update maps.nix
2019-02-13 08:53:32 +10:00
Sophie Taylor
ce1eb1ea79
Update and rename maps.nix to maps-replays.nix
2019-02-12 10:41:41 +00:00
Sarah Brofeldt
c0cfe9bf50
Merge pull request #54991 from FlorianFranzen/sc2-headless
...
sc2-headless: 3.17 -> 4.7.1
2019-02-12 09:42:56 +01:00
Timo Kaufmann
5728028916
sage: add numpy 1.16 compatibility patch
...
https://trac.sagemath.org/ticket/27000
2019-02-11 21:43:56 +01:00
Timo Kaufmann
342333c0ab
sage: add compatibility for sphinx 1.8.3 ( #55078 ) ( #55560 )
...
Since https://github.com/NixOS/nixpkgs/pull/48841 was replaced by
https://github.com/NixOS/nixpkgs/pull/54186 , this needs to be done
separately.
(cherry picked from commit 33db01e6d9
)
2019-02-11 13:18:16 +01:00
Florian Franzen
f470720aa8
Merge branch 'staging-next' into staging
2019-02-10 14:37:31 +01:00
Matthew Bauer
5c09d977c7
Merge remote-tracking branch 'origin/master' into staging
2019-02-09 12:14:06 -05:00
Vladimír Čunát
d2c4b5777b
sagelib: fix missing pkgs.pkgconfig
...
Again: eb3f0aef43
#54306
Apparently the derivation needs both pkgconfigs
(it fails when missing either).
2019-02-09 10:36:47 +01:00
tbenst
1cb81a69a0
cmtk: init at 3.3.1 ( #54016 )
...
* cmtk: init at 3.3.1
2019-02-08 17:41:14 -05:00
Will Dietz
dcfce974d9
Merge pull request #55077 from m-labs/for-upstream
...
rink: init at 0.4.4
2019-02-07 09:47:46 -06:00
Timo Kaufmann
dbc771f2e1
Merge pull request #55299 from r-ryantm/auto-update/jmol
...
jmol: 14.29.29 -> 14.29.31
2019-02-06 13:15:46 +01:00
markuskowa
0496c08afd
Merge pull request #55298 from r-ryantm/auto-update/igv
...
igv: 2.4.16 -> 2.4.17
2019-02-06 12:50:24 +01:00
Markus Kowalewski
64e9f2ad65
jmol: remove redundant name attribute
...
version and pname are alrady present
2019-02-06 12:25:25 +01:00
R. RyanTM
a1360faba7
jmol: 14.29.29 -> 14.29.31
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
2019-02-05 20:33:46 -08:00
R. RyanTM
da628f0cbd
igv: 2.4.16 -> 2.4.17
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/igv/versions
2019-02-05 20:06:55 -08:00
markuskowa
9703765556
molden: 5.8.2 -> 5.9.3 ( #55044 )
2019-02-05 23:57:29 +02:00
markuskowa
5c7edec7a3
Merge pull request #55152 from r-ryantm/auto-update/star
...
star: 2.6.1d -> 2.7.0a
2019-02-04 22:53:49 +01:00
R. RyanTM
b015c68def
verilator: 4.008 -> 4.010
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/verilator/versions
2019-02-04 11:54:29 -06:00
R. RyanTM
e27eaf6111
star: 2.6.1d -> 2.7.0a
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/star/versions
2019-02-03 17:20:27 -08:00
Jan Malakhovski
c7675be3c1
sc2-headless: move defaults to package file
2019-02-03 15:33:29 +00:00
Vladimír Čunát
32767d139f
Merge branch 'staging-next'
...
This round is without the systemd CVE,
as we don't have binaries for that yet.
BTW, I just ignore darwin binaries these days,
as I'd have to wait for weeks for them.
2019-02-20 09:38:45 +01:00
Michael Raskin
446520bb9b
Merge pull request #56026 from oxij/tree/move-defaults-to-package-files-half-cuda
...
all-packages.nix: move defaults to package files continues^2
2019-02-19 21:54:02 +00:00
Vincent Laporte
e4035c3e0e
Merge pull request #55633 from vbgl/alt-ergo-2.3.0
...
alt-ergo: 2.2.0 -> 2.3.0
2019-02-19 09:53:57 +01:00
Frederik Rietdijk
815b77cbe6
Merge master into staging-next
2019-02-18 14:18:04 +01:00
Vladimír Čunát
f7f1a2f54e
Merge branch 'master' into staging-next
...
A mass darwin rebuild from master (#55784 ).
2019-02-17 08:05:24 +01:00
Vincent Laporte
e4a8af06d1
alt-ergo: 2.2.0 -> 2.3.0
2019-02-12 09:19:06 +00:00
Jan Malakhovski
4bc66b1994
cntk: move defaults to package file
2019-02-03 15:32:16 +00:00
Jan Malakhovski
31aa884b7f
caffe: move defaults to package file
2019-02-03 15:32:15 +00:00
Jan Malakhovski
49148a3ea2
mxnet: move defaults to package file
2019-02-03 15:32:14 +00:00
Jan Malakhovski
88ca6dd78a
cplex: move defaults to package file
2019-02-03 15:30:47 +00:00
Jan Malakhovski
ec2452dac1
scilab: move defaults to package file
2019-02-03 15:30:45 +00:00
Sebastien Bourdeauducq
3b03b901fb
rink: init at 0.4.4
2019-02-03 13:29:18 +08:00
Timo Kaufmann
33db01e6d9
sage: add compatibility for sphinx 1.8.3 ( #55078 )
...
Since https://github.com/NixOS/nixpkgs/pull/48841 was replaced by
https://github.com/NixOS/nixpkgs/pull/54186 , this needs to be done
separately.
2019-02-02 13:02:07 +01:00
Sébastien Maret
cb72eec530
gildas: 20190101_b -> 20190201_a
2019-02-01 16:29:30 +01:00
Vladimír Čunát
8ba516664b
Merge branch 'staging-next' into staging
2019-02-01 09:42:53 +01:00
Florian Franzen
337babae4c
sc2-headless: 3.17 -> 4.7.1
2019-01-31 15:21:58 +01:00
markuskowa
e27e114803
Merge pull request #53677 from jbedo/snpeff-4.3T
...
snpeff: 4.3q -> 4.3t
2019-01-31 10:36:32 +01:00
Robert Schütz
052acfe930
sage: python-openid: move django and twill to checkInputs ( #54949 )
...
A search through the source code
(https://github.com/openid/python-openid/search?q=django and
https://github.com/openid/python-openid/search?q=twill ) reveals
that they are only used in examples and tests.
2019-01-31 10:14:36 +01:00
Justin Bedo
75dd587793
snpeff: 4.3q -> 4.3t
2019-01-31 15:15:05 +11:00
markuskowa
ca13dc163b
Merge pull request #49871 from wucke13/getdp
...
getdp: init at 3.0.4
2019-01-31 00:43:08 +01:00
markuskowa
a98cebbc35
Merge pull request #54828 from r-ryantm/auto-update/gmsh
...
gmsh: 4.1.0 -> 4.1.3
2019-01-29 12:39:06 +01:00
Sébastien Maret
d5f4b2b63e
gildas: 20181201_a -> 20190101_b
2019-01-29 11:00:45 +00:00
R. RyanTM
2b39f17d08
minimap2: 2.14 -> 2.15
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/minimap2/versions
2019-01-28 20:01:47 +00:00
R. RyanTM
2b03ef0521
gmsh: 4.1.0 -> 4.1.3
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
2019-01-28 10:33:36 -08:00
R. RyanTM
00cdff318a
picard-tools: 2.18.23 -> 2.18.25
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
2019-01-28 17:17:30 +00:00
wucke13
4f40b5e00e
getdp: init at 3.0.4
2019-01-28 16:45:13 +01:00
Dmitry Kalinkin
b8d6cc8157
Merge pull request #54520 from veprbl/pr/sherpa_2.2.6
...
sherpa: 2.2.5 -> 2.2.6
2019-01-27 22:01:53 -05:00
Matthew Bauer
92f0f8dd68
Merge remote-tracking branch 'NixOS/master' into staging
2019-01-27 00:01:13 -05:00
Michael Raskin
cc74c0399e
leo3: init at 1.2
2019-01-27 01:57:11 +01:00
Artemis Tosini
51a2a08d6e
mathematica: 11.2.0 -> 11.3.0
...
Note that this only affects the English version, as I do not have access
to the hash for the Japanese version.
2019-01-25 15:29:02 +00:00
Dmitry Kalinkin
d28bce307e
sherpa: 2.2.5 -> 2.2.6
2019-01-24 18:46:15 -05:00
worldofpeace
78da8d668b
pantheon: init a 5.0
2019-01-24 20:54:14 +00:00
Vincent Laporte
b76961124d
coq_8_9: 8.9+beta1 -> 8.9.0
2019-01-24 09:08:51 +00:00
Michael Raskin
ebb370f680
z3-tptp: init
...
Z3 ships a TPTP-supporting wrapper as an example; allow building it
2019-01-22 16:51:18 +01:00
Vladimír Čunát
3fe32b675e
Merge branch 'master' into staging
2019-01-22 15:59:42 +01:00
Dmitry Kalinkin
958201a98f
Merge pull request #48675 from veprbl/pr/xfitter_fix
...
xfitter: runtime fixes
2019-01-20 20:00:02 -05:00
Mario Rodas
9a18d9356d
lean: 3.4.1 -> 3.4.2
2019-01-20 06:46:37 -05:00
Austin Seipp
5069fa0a30
nixpkgs: remove sapic-0.9
...
SAPIC is bundled with Tamarin and doesn't have separate releases
anymore; add an appropriate 'throw' clause to the alias so people know
where to find it.
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2019-01-19 18:54:38 -06:00
Austin Seipp
fc159594a7
tamarin-prover: 1.4.0 -> 1.4.1, bundled sapic
...
With this, we can drop the old 1.4.0 patches for 8.4 support, since
those are now upstream.
Furthermore, SAPIC Is now bundled inside Tamarin, so we can drop the
external dependency. (This includes a patch that compiles SAPIC to
native code, much like the original, to reduce closure size.)
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2019-01-19 18:54:38 -06:00
Dmitry Kalinkin
0f3758b5e6
Merge pull request #53839 from fusion809/marvin
...
marvin: init at 19.1.0
2019-01-19 15:50:49 -05:00
Frederik Rietdijk
d531da6f8a
Merge pull request #54094 from rnhmjoj/shell
...
treewide: use ${stdenv.shell} instead of /bin/sh where possible
2019-01-19 14:15:51 +01:00
Timo Kaufmann
d34f44db45
sage: fix transient ecl error ( #54285 )
...
Sometimes the doctests fail because ecl races to create a directory.
This should fix that by making sure each process has its own directory.
2019-01-18 23:02:03 +01:00
markuskowa
4545aaa671
Merge pull request #54209 from r-ryantm/auto-update/gmsh
...
gmsh: 4.0.7 -> 4.1.0
2019-01-18 11:40:48 +01:00
worldofpeace
ce69fadb36
Merge pull request #54153 from r-ryantm/auto-update/picard-tools
...
picard-tools: 2.18.21 -> 2.18.23
2019-01-18 01:51:04 +00:00
R. RyanTM
55ea7b1bbe
gmsh: 4.0.7 -> 4.1.0
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
2019-01-17 12:55:54 -08:00
Timo Kaufmann
e379ee67c3
sage: 8.5 -> 8.6
2019-01-17 20:39:02 +01:00
Timo Kaufmann
29e150d85f
Merge pull request #54127 from timokau/gap-improvements
...
gap: install libgap, add packageSet option
2019-01-17 20:38:38 +01:00
Timo Kaufmann
cf63a8c94c
gap: add packageSet option
...
Two reasons for this:
- more fine-grained space/functionality tradeoff
- preparation for the sage 8.6 update, which finally doesn't need a
downgraded gap anymore but does break when unexpected (non-standard)
packages are installed. Details: https://trac.sagemath.org/ticket/26983
The proper way to deal with gap packages would be to create a package
set, package each one individually and have something like gap
equivalent of `python.withPackages`. I am not willing to do that
however.
2019-01-17 10:10:24 +01:00
Timo Kaufmann
bb173ec8e3
gap: install libgap
...
There are some starts of a `make install`, but nothing complete yet.
Upstream now ships a `libgap` as a replacement of the custom one used by
sagemath.
2019-01-17 10:10:21 +01:00
R. RyanTM
b2a7ef628a
picard-tools: 2.18.21 -> 2.18.23
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
2019-01-16 21:43:19 -08:00
Timo Kaufmann
6bbd0596dd
gap: add timokau as maintainer
...
So that I'll be notified on changes which likely impact sage.
2019-01-16 23:41:31 +01:00
Timo Kaufmann
a8dbc5e313
python.pkgs.cypari2: 1.3.1 -> 2.0.3 ( #54093 )
...
Upstream issues should be fixed now, see https://trac.sagemath.org/ticket/26442 .
Sage needs a patch to adapt.
2019-01-16 22:15:40 +01:00
rnhmjoj
bcf54ce5bb
treewide: use ${stdenv.shell} instead of /bin/sh where possible
2019-01-16 20:37:15 +01:00
Gabriel Ebner
49db581e8c
elan: 0.7.1 -> 0.7.2
2019-01-15 10:05:45 +01:00
Brenton Horne
6be5e679b1
marvin: init at 19.1.0
...
Also adding myself (fusion809) as a maintainer.
The marvin Nix file in this commit is largely thanks to @msteen.
2019-01-15 00:23:38 +10:00
Johannes Frankenau
bebf305c1b
gurobi: 8.0.1 -> 8.1 ( #53884 )
2019-01-13 23:22:55 +01:00
R. RyanTM
26b492b207
minimap2: 2.10 -> 2.14 ( #52845 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/minimap2/versions
2019-01-13 22:34:45 +01:00
Vladimír Čunát
bde8efe792
Merge branch 'master' into staging-next
...
A couple thousand rebuilds have accumulated on master.
2019-01-12 12:19:34 +01:00
Dmitry Kalinkin
73625f2522
root5: mark as broken on Linux
2019-01-11 20:45:37 -05:00
Dmitry Kalinkin
0c9335fb1c
root, root5: fix build on darwin
2019-01-11 20:45:37 -05:00
tbenst
d34f2b9b96
bftools: init at 5.9.2 ( #53769 )
2019-01-10 18:28:28 -05:00
markuskowa
b70a4b2b98
Merge pull request #53478 from bgamari/bump-ngspice
...
ngspice: 29 -> 30
2019-01-10 20:17:54 +01:00
Vladimír Čunát
287144e342
Merge branch 'master' into staging-next
2019-01-10 13:07:21 +01:00
Austin Seipp
c10650760d
yices: s/fetchurl/fetchFromGitHub/
...
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2019-01-08 19:15:24 -06:00
Austin Seipp
38aa0a3df4
z3: 4.8.3 -> 4.8.4
...
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2019-01-08 19:15:24 -06:00
Austin Seipp
d77f381055
symbiyosys: 2018.09.12 -> 2018.12.09
...
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2019-01-08 19:15:24 -06:00
Simon Lackerbauer
f7367cbf1c
abella: 2.0.5 -> 2.0.6
2019-01-08 17:05:30 +00:00
R. RyanTM
bd7eec5d9c
pynac: 0.7.22 -> 0.7.23 ( #53559 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/pynac/versions
2019-01-07 14:52:18 +01:00
Vladimír Čunát
10a12194e3
Merge #53490 : fix treewide linking errors after #51770
...
Issue #53001 . This might not be all of them, but let's not wait.
2019-01-06 12:14:52 +01:00
Frederik Rietdijk
a4250d1478
Merge staging-next into staging
2019-01-06 09:48:31 +01:00
Frederik Rietdijk
e5381cdece
Merge master into staging-next
2019-01-06 09:36:23 +01:00
Jörg Thalheim
37fe593d48
cryptominisat: switch to python3
2019-01-05 16:38:10 +01:00
Jörg Thalheim
4a4d1d6497
cryptominisat: 5.0.1 -> 5.6.6
2019-01-05 12:45:44 +01:00
Frederik Rietdijk
60a3973a55
Merge staging-next into staging
2019-01-05 10:15:00 +01:00
Piotr Bogdan
71f216b7e6
golly-beta: link with lib{dl,GL} explicitly
2019-01-04 21:44:19 +00:00
Piotr Bogdan
ae7557c4cb
avogadro: fix libX11 underlinking
2019-01-04 21:13:57 +00:00
Frederik Rietdijk
9618abe87c
Merge master into staging-next
2019-01-04 21:13:19 +01:00
Lengyel Balazs
f4a53ff3bc
treewide/xorg: replace *proto with xorgproto
2019-01-04 14:38:57 +01:00
Frederik Rietdijk
0a2caa41fe
Python: drop python.majorVersion
...
Drop `python.majorVersion`. For Python language version, use `python.pythonVersion`.
For implementation version, use `python.sourceVersion`.
Some expressions were broken. Those that were identified were fixed.
fixup major
2019-01-04 10:45:22 +01:00
R. RyanTM
c7afdaf5cd
gtkwave: 3.3.97 -> 3.3.98
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gtkwave/versions
2019-01-03 16:44:01 -05:00
Ben Gamari
537b0ac9be
ngspice: 29 -> 30
...
Just a simple bump.
2019-01-03 16:16:51 -05:00
Frederik Rietdijk
2da31b80bb
Merge master into staging-next
2019-01-03 20:07:35 +01:00
markuskowa
d38f103586
Merge pull request #53312 from r-ryantm/auto-update/gromacs
...
gromacs: 2018.4 -> 2019
2019-01-03 18:52:49 +01:00
R. RyanTM
344fd2319b
gromacs: 2018.4 -> 2019
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gromacs/versions
2019-01-03 05:58:09 -08:00
R. RyanTM
c00dbcb7c4
picard-tools: 2.18.20 -> 2.18.21
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
2019-01-03 08:39:10 +01:00
Frederik Rietdijk
092e3b50a8
Merge master into staging-next
2019-01-02 21:08:27 +01:00
Vladimír Čunát
70bff06140
Merge branch 'master' into staging
2019-01-02 17:19:23 +01:00
R. RyanTM
e6d8d29f30
kicad: 5.0.1 -> 5.0.2 ( #52866 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/kicad/versions
2019-01-01 20:02:29 +01:00
Frederik Rietdijk
070290bda7
Merge master into staging-next
2018-12-31 12:00:36 +01:00
Vincent Laporte
ea92816c74
why3: 1.1.0 -> 1.1.1 ( #52980 )
2018-12-29 21:05:23 +01:00
Timo Kaufmann
7abdacc4f2
Merge pull request #51039 from timokau/sage-8.5
...
sage: 8.4 -> 8.5
2018-12-29 16:15:38 +01:00
Timo Kaufmann
8cd7b5aab3
gap: 4r8p10 -> 4.10.0 ( #53037 )
...
This new version also has a libgap replacement, so after the next sage
update gap-libgap-compatible and libgap won't be necessary anymore.
2018-12-29 16:05:56 +01:00
Timo Kaufmann
22c16ed300
Merge remote-tracking branch 'upstream/master' into sage-8.5
2018-12-29 12:16:02 +01:00
Timo Kaufmann
95909d4fb6
Revert "sage: preload openblasCompat"
...
This reverts commit 4900bbee17
.
The issue that was supposed to fix is now fixed by lazy-loading rpy2 and
makign sure scipy is loaded before that.
That is not quite as nice, but preloading is now causing its own issues
with openblas 0.3.4:
https://github.com/xianyi/OpenBLAS/issues/1936
2018-12-28 23:06:05 +01:00
Timo Kaufmann
360eddd3a3
sage: remove outdated patch files
2018-12-28 23:06:05 +01:00
Timo Kaufmann
6f0f06ec89
sage: 8.5.rc1 -> 8.5
2018-12-28 23:06:05 +01:00
Andrey Komarov
bc7aa5d202
iverilog: 2017.08.12 -> 2018.12.15
2018-12-28 07:53:36 -06:00
Frederik Rietdijk
10afccf145
Merge staging-next into staging
2018-12-27 18:11:34 +01:00
R. RyanTM
338cf1a7fc
igv: 2.4.15 -> 2.4.16
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/igv/versions
2018-12-26 10:44:01 +01:00
Jan Tojnar
c45e9d0fac
Merge branch 'master' into staging
2018-12-25 17:03:57 +01:00
Alexey Shmalko
a5306b311b
Merge pull request #52768 from r-ryantm/auto-update/stellarium
...
stellarium: 0.18.2 -> 0.18.3
2018-12-24 16:38:24 +02:00
Jan Tojnar
ef935fa101
Merge branch 'master' into staging
2018-12-24 15:02:29 +01:00
R. RyanTM
c6cc68a510
stellarium: 0.18.2 -> 0.18.3
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/stellarium/versions
2018-12-24 04:42:47 -08:00
Jörg Thalheim
5bae6dea20
Merge pull request #52669 from r-ryantm/auto-update/verilator
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verilator: 4.006 -> 4.008
2018-12-22 12:51:50 +01:00
R. RyanTM
d4021ad9e4
verilator: 4.006 -> 4.008
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/verilator/versions
2018-12-22 03:33:41 -08:00
Dmitry Kalinkin
62aea9510c
Merge pull request #51796 from bachp/dsview-0.99
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dsview: init at 0.99
2018-12-21 17:40:40 -05:00
Alex Branham
a5fc513079
R: 3.5.1 -> 3.5.2
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Closes https://github.com/NixOS/nixpkgs/pull/52571 .
2018-12-21 13:59:36 +01:00
Pascal Bach
3facb3bf79
dsview: init at 0.99
2018-12-21 10:24:16 +01:00
Samuel Dionne-Riel
3c38cc8058
Merge pull request #51813 from samueldr/aarch64/disable-non-arm-builds-part-1
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aarch64: ZHF for aarch64 (1/??)
2018-12-20 21:06:52 -05:00
Renaud
6f5ec9d889
Merge pull request #52134 from r-ryantm/auto-update/picard-tools
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picard-tools: 2.18.17 -> 2.18.20
2018-12-19 17:53:47 +01:00
Frederik Rietdijk
9ab61ab8e2
Merge staging-next into staging
2018-12-19 09:00:36 +01:00
volth
fed7914539
Merge branch 'staging' into make-perl-pathd
2018-12-18 17:13:27 +00:00
Renaud
921caad16d
Merge pull request #52284 from r-ryantm/auto-update/gtkwave
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gtkwave: 3.3.95 -> 3.3.97
2018-12-17 16:23:56 +01:00
Gabriel Ebner
21597583f9
Merge pull request #52067 from r-ryantm/auto-update/qalculate-gtk
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qalculate-gtk: 2.8.1 -> 2.8.2
2018-12-17 09:46:32 +01:00
markuskowa
96b0a38f07
Merge pull request #52015 from r-ryantm/auto-update/star
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star: 2.6.1c -> 2.6.1d
2018-12-16 23:38:37 +01:00
Timo Kaufmann
b09967d812
sage: 8.5.rc0 -> 8.5.rc1
2018-12-16 21:33:28 +01:00
Jörg Thalheim
33c227c23b
Merge pull request #52392 from r-ryantm/auto-update/calc
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calc: 2.12.7.1 -> 2.12.7.2
2018-12-16 17:33:43 +00:00
R. RyanTM
ae22d3dc85
cubicle: 1.1.1 -> 1.1.2
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/cubicle/versions
2018-12-16 17:24:47 +01:00
R. RyanTM
67536060ac
calc: 2.12.7.1 -> 2.12.7.2
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/calc/versions
2018-12-16 07:44:09 -08:00