Peter Simons
22a802584f
Merge pull request #50179 from Thra11/r-without-jdk
...
R: Remove jdk dependency on aarch32/64
2018-11-12 12:42:39 +01:00
Frederik Rietdijk
1d3bff25db
Merge staging-next into staging
2018-11-11 14:28:08 +01:00
Frederik Rietdijk
7863aae5b2
Merge master into staging-next
2018-11-11 08:59:44 +01:00
markuskowa
45a4adb1b3
Merge branch 'master' into atlas-remove
2018-11-11 02:22:04 +01:00
Markus Kowalewski
6533d7588d
colpack: set platform to linux
2018-11-11 02:17:49 +01:00
Tom Hall
b51018ed2e
R: Remove jdk dependency on aarch32/64
...
Add javaSupport as an argument for R. Default to false on arm as there is no free jdk on arm.
2018-11-10 20:53:26 +00:00
R. RyanTM
2fd0c31673
calc: 2.12.6.8 -> 2.12.7.1 ( #50173 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/calc/versions
2018-11-10 15:32:06 +01:00
Gabriel Ebner
698ad2dd4d
nasc: 0.5.0 -> 0.5.1
2018-11-10 14:18:31 +01:00
Gabriel Ebner
5f2a7607fa
qalculate-gtk: 2.6.2 -> 2.8.1
2018-11-10 13:17:17 +01:00
Frederik Rietdijk
53d00c3351
Merge master into staging-next
2018-11-10 11:08:54 +01:00
Timo Kaufmann
ea8d794026
Merge pull request #50092 from r-ryantm/auto-update/jmol
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jmol: 14.29.26 -> 14.29.28
2018-11-10 10:13:35 +01:00
R. RyanTM
37f01d5bf8
igv: 2.4.14 -> 2.4.15 ( #50087 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/igv/versions
2018-11-09 22:42:04 -05:00
R. RyanTM
f5b4eb63f3
gp2c: 0.0.11 -> 0.0.11pl1
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gp2c/versions
2018-11-09 17:56:17 -08:00
R. RyanTM
6f2bb3c275
gmsh: 4.0.2 -> 4.0.4
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
2018-11-09 17:41:49 -08:00
R. RyanTM
3902a47bed
jmol: 14.29.26 -> 14.29.28
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
2018-11-09 16:17:35 -08:00
Jörg Thalheim
c44e7b2e1c
Merge pull request #50024 from r-ryantm/auto-update/ngspice
...
ngspice: 28 -> 29
2018-11-09 14:35:44 +00:00
R. RyanTM
791286efd9
ngspice: 28 -> 29
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ngspice/versions
2018-11-09 06:07:46 -08:00
Renaud
5810df24a7
Merge pull request #49834 from smaret/gildas-update
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gildas: 20181001_b -> 20181101_a
2018-11-09 10:20:32 +01:00
Matthew Bauer
3dcb8c10f5
shogun: remove liblapack
...
not needed anymore
2018-11-08 14:42:29 -06:00
Gabriel Ebner
155595b0c7
eprover: 2.1 -> 2.2
2018-11-07 22:33:25 +01:00
Matthew Bauer
349f3dfe25
shogun: use openblas
...
shogun needs the cblas.h header file to be available. It used to get
it from liblapack, but that is not available anymore. Instead we can
use openblasCompat to get it.
2018-11-07 13:18:33 -06:00
Timo Kaufmann
efe6322ce4
pythonPackages.networkx: 2.1 -> 2.2
2018-11-07 20:15:37 +01:00
Timo Kaufmann
72e6e792f6
sage: add fetchSageDiff utility function
2018-11-07 20:15:37 +01:00
Sebastien Maret
1048a7349e
gildas: 20181001_b -> 20181101_a
2018-11-06 17:00:10 +01:00
Patrick Hilhorst
9ec40cc3bf
treewide: Fix overrides having wrong versions
2018-11-06 00:06:21 +01:00
John Ericson
48caae5045
Merge remote-tracking branch 'upstream/master' into HEAD
2018-11-05 15:19:33 -05:00
Matthew Bauer
95373d3634
atlas: remove
...
atlas is broken and can apparently be removed.
Fixes #49594
2018-11-04 20:23:12 -06:00
Jörg Thalheim
b3ed2b4c18
Merge pull request #49728 from vbgl/acgtk-1.5.0
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acgtk: 1.3.1 -> 1.5.0
2018-11-04 17:09:34 +00:00
Frederik Rietdijk
cb4ff927a1
Merge master into staging-next
2018-11-04 08:49:24 +01:00
Théo Zimmermann
dd21f83950
coq_8_9: init at 8.9+beta1
2018-11-04 07:26:29 +00:00
Vincent Laporte
08ac103970
acgtk: 1.3.1 -> 1.5.0
2018-11-04 06:29:27 +00:00
Renaud
848f2f3d0d
Merge pull request #49559 from ikarulus/librepcb
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bump version librepcb-unstable: 2018-06-28 -> 2018-10-31
2018-11-03 14:38:39 +01:00
Ikarulus
f5af5b19f4
librepcb-unstable: 2018-06-28 -> 2018-10-31
2018-11-03 13:01:41 +01:00
Matthew Bauer
7f4b26681d
Merge pull request #49417 from matthewbauer/disallow-native-build-inputs
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Disallow references to nativeBuildInputs
2018-11-02 20:26:48 -05:00
Kevin Quick
411c665f33
yices: 2.6.0 -> 2.6.1
2018-11-02 15:49:09 -07:00
Jan Tojnar
3493f44727
Merge pull request #49560 from worldofpeace/eos-third-update
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update some elementary thirdparty apps
2018-11-02 21:29:57 +01:00
worldofpeace
0a2420bccd
nasc: 0.4.7 -> 0.5.0
2018-11-02 16:01:05 -04:00
Austin Seipp
3378db6adf
Merge branch 'master' into staging
2018-11-02 14:01:15 -05:00
Michael Raskin
722476273c
Merge pull request #49547 from fadenb/simgrid_3.21
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simgrid: 3.20 -> 3.21
2018-11-02 14:22:47 +00:00
Vladimír Čunát
a92a2c8e15
Merge branch 'master' into staging
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Conflict: rename of pythondaemon -> python-daemon.
2018-11-02 14:40:14 +01:00
Tristan Helmich (omniIT)
4f8cac02c6
simgrid: 3.20 -> 3.21
2018-11-02 14:23:39 +01:00
ikarulus
7bd8805408
kicad 5.0.0 -> 5.0.1 ( #49561 )
2018-11-02 10:32:32 +01:00
Gabriel Ebner
5de50f8fa3
Merge pull request #49250 from royneary/nim-0.19
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nim: 0.18.0 -> 0.19.0
2018-11-02 10:20:13 +01:00
Will Dietz
c417342cd2
Merge pull request #48579 from dtzWill/update/z3-4.8.1
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z3: 4.7.1 -> 4.8.1
2018-11-02 04:02:24 -05:00
royneary
bb2bae6986
mosdeph: fix compilation with nim 0.19
2018-10-31 22:03:27 +01:00
Frederik Rietdijk
1d196d99be
Merge staging-next into staging
2018-10-30 20:35:15 +01:00
Jörg Thalheim
8df0ca2bbc
coq_8_4: remove
...
verasco was its only user
2018-10-30 13:31:11 +00:00
Tuomas Tynkkynen
067d1cf330
Merge remote-tracking branch 'upstream/master' into staging
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Conflicts:
pkgs/applications/science/math/sage/sage-src.nix
2018-10-27 19:58:03 +03:00
Timo Kaufmann
2513747356
sage: fix attrname
...
This is a minimal change mainly to make sure repology recognizes this
package as sage. I plan a bit more refactoring later, but this is
intentionally kept minimally invasive so that it won't break anything
and can be backported to 18.09.
2018-10-27 14:18:08 +02:00
Timo Kaufmann
7970a5a475
Merge pull request #49225 from timokau/arb-2.15.1
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arb: 2.14.0 -> 2.15.1
2018-10-27 12:36:51 +02:00
Timo Kaufmann
fbea2cd77a
arb: 2.14.0 -> 2.15.1
2018-10-27 11:27:03 +02:00
Timo Kaufmann
2ce2fcfc30
pythonPackages.cython: 0.28.5 -> 0.29
...
Needs a sage patch from
https://trac.sagemath.org/ticket/25292
2018-10-24 20:05:44 +02:00
Joachim F
b6a5cd8970
Merge pull request #48812 from mpickering/cedille
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cedille bug fixes
2018-10-24 15:29:47 +00:00
R. RyanTM
c759273e2e
star: 2.6.1a -> 2.6.1c
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/star/versions
2018-10-24 15:22:22 +02:00
Timo Kaufmann
db75fe7313
sage: fix doctest
...
The test is depending on the "py2" tag always being added. I patched
that recently to make it possible to test sagedoc individually. Somehow
I missed this doctest.
2018-10-22 14:52:19 +02:00
Matthew Pickering
08e5ef20d8
cedille: Make a seperate output for the base library
...
For now, for normal usage you need to add `${cedille.lib}` to
the `~/.cedille/options` file so that cedille will find the base
libraries. There is no option to pass options by the command line.
2018-10-22 08:43:07 +00:00
Matthew Pickering
f7d4bc2c71
cedille: Apply patch which unbreaks the options file
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See https://github.com/cedille/cedille/issues/29
2018-10-22 08:42:01 +00:00
Timo Kaufmann
b39142cd1f
sage: fix dochtml tests
2018-10-21 19:17:07 +02:00
Timo Kaufmann
38c2be5ffe
sage: fix docbuild
...
This is only a hotfix without really knowing the issue. See
https://groups.google.com/forum/#!msg/sage-packaging/VU4h8IWGFLA/mrmCMocYBwAJ
2018-10-21 14:16:06 +02:00
Timo Kaufmann
a413dedde1
Merge pull request #44527 from timokau/sage-8.4
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[WIP] sage: 8.3 -> 8.4
2018-10-20 01:34:34 +02:00
Vincent Laporte
c091e93b99
Merge pull request #48617 from Zimmi48/passthru-ocamlPackages-in-coq-package
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coq: add ocamlPackages in passthru
2018-10-19 09:38:07 +00:00
Jörg Thalheim
a595b872c8
Merge pull request #48509 from r-ryantm/auto-update/gtkwave
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gtkwave: 3.3.94 -> 3.3.95
2018-10-19 09:29:23 +01:00
Jörg Thalheim
02405cfe83
Merge pull request #48565 from rprospero/sasview-4.2.0
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Sasview: unstable -> 4.2.0
2018-10-18 21:44:25 +01:00
Jörg Thalheim
84890ac196
Merge pull request #48653 from vbgl/why3-1.1.0
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why3: 1.0.0 -> 1.1.0
2018-10-18 18:55:10 +01:00
Timo Kaufmann
7ca1c31dfa
sage: 8.4.rc1 -> 8.4
2018-10-18 09:58:36 +02:00
Vincent Laporte
bc8d25c1ef
why3: 1.0.0 -> 1.1.0
2018-10-18 05:43:36 +00:00
Jörg Thalheim
4057f2107a
Merge pull request #48511 from r-ryantm/auto-update/gmsh
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gmsh: 4.0.1 -> 4.0.2
2018-10-17 16:02:01 +01:00
Adam Washington
6be90bf8d7
sasmodels: unstable -> 4.2.0
2018-10-17 14:36:46 +01:00
Théo Zimmermann
fa12476755
coq: add ocamlPackages in passthru
...
We might need OCaml packages that are not the one Coq is depending on
but they still need to come from the same package set (same OCaml version).
2018-10-17 13:26:43 +02:00
Will Dietz
51e511130a
z3: 4.7.1 -> 4.8.1
2018-10-16 12:28:06 -05:00
Timo Kaufmann
d2b5518e1e
Merge pull request #48507 from r-ryantm/auto-update/jmol
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jmol: 14.29.22 -> 14.29.26
2018-10-16 10:36:39 +02:00
R. RyanTM
eeb2ee296c
gmsh: 4.0.1 -> 4.0.2
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
2018-10-15 21:54:45 -07:00
R. RyanTM
a721411239
gtkwave: 3.3.94 -> 3.3.95
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gtkwave/versions
2018-10-15 21:21:29 -07:00
R. RyanTM
fedc17a99d
jmol: 14.29.22 -> 14.29.26
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
2018-10-15 21:05:03 -07:00
Chris Ostrouchov
397e15f89e
lammps: patch_2Aug2018 -> stable_22Aug2018
...
nix derivation was cleaned significantly to follow nixpkgs better
2018-10-15 08:43:57 -04:00
Chris Ostrouchov
7717a2b844
dl-poly-classic: init 1.10
...
only mpi version provided
2018-10-15 08:43:50 -04:00
Matthew Pickering
43ae33728b
cedille: init at 1.0.0
2018-10-14 19:17:23 +00:00
R. RyanTM
d074fb1940
verilator: 4.002 -> 4.004
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/verilator/versions
2018-10-14 09:01:56 +02:00
Moritz Kiefer
6738033727
alt-ergo: 1.30->2.2.0, ocplib-simplex: 0.3->0.4
2018-10-13 17:45:45 +00:00
Timo Kaufmann
f89df0b556
sage: 8.4.rc0 -> 8.4.rc1
2018-10-13 13:27:10 +02:00
Sebastien Maret
4f3c13b84f
gildas: 20181001_a -> 20181001_b ( #48200 )
2018-10-11 11:37:38 +02:00
Vincent Laporte
6113d95235
prooftree: cleaning
2018-10-11 05:59:21 +00:00
Théo Zimmermann
2fdd38ed2d
camlp5_transitional: remove in favor of camlp5 (strict)
2018-10-10 19:44:54 +02:00
Théo Zimmermann
7ac0a23194
prooftree: 0.12 -> 0.13
2018-10-10 19:42:50 +02:00
Théo Zimmermann
c76ffb9253
matita: remove broken package
...
As requested by Vincent Laporte.
2018-10-09 09:47:31 +02:00
Théo Zimmermann
34394a38ef
ocamlPackages_3_11_2: remove
...
This requires removing also the Coq 8.3 and Matita 0.5.8 packages.
Coq 8.3 was released 8 years ago (2010) and there is no trace left
of users of this version (contrary to Coq 8.4, released 2012).
It is well over time to remove it.
Matita 0.5.8 was released in 2010 and because this version was still
used for teaching according to the official website, a legacy release
(0.5.9) was released in 5 years later to compile with more recent
OCaml libraries.
Updating to 0.5.9 (or a more recent version like 0.99.3) should allow
getting rid of the dependency on older OCaml but it is hard to test
given that the package is already broken before this update.
2018-10-08 21:10:05 +02:00
Timo Kaufmann
27919e06f1
sage: 8.4.beta7 -> 8.4.rc0
2018-10-07 12:23:10 +02:00
Marco Maggesi
9a5f7b1630
hol_light: 2017-07-06 -> 2018-09-30
...
Also handle compatibility with newer version of OCaml (depend on num
library as needed).
2018-10-06 15:49:09 +00:00
Matthew Bauer
c4f344ac44
Merge pull request #47291 from veprbl/pr/xfitter_init
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xfitter: init at 2.0.0
2018-10-05 22:38:09 -05:00
Jörg Thalheim
5200167f12
Merge pull request #47831 from r-ryantm/auto-update/calc
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calc: 2.12.6.6 -> 2.12.6.8
2018-10-04 23:31:38 +01:00
Jörg Thalheim
a24cf5c4f7
Merge pull request #47845 from r-ryantm/auto-update/bowtie2
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bowtie2: 2.3.4.2 -> 2.3.4.3
2018-10-04 20:19:35 +01:00
Gabriel Ebner
0a7e258012
elan: 0.5.0 -> 0.7.1
2018-10-04 16:33:36 +02:00
R. RyanTM
269efba0aa
bowtie2: 2.3.4.2 -> 2.3.4.3
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/bowtie2/versions
2018-10-03 21:49:10 -07:00
R. RyanTM
904fd99bb4
calc: 2.12.6.6 -> 2.12.6.8
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/calc/versions
2018-10-03 16:01:08 -07:00
R. RyanTM
98092f7a67
nauty: 26r10 -> 26r11
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/nauty/versions
2018-10-03 05:54:07 -07:00
R. RyanTM
609f9198f2
verilator: 3.926 -> 4.002
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/verilator/versions
2018-10-02 09:56:10 -05:00
Sebastien Maret
34ac35dfc6
gildas: 20180901_a -> 20181001_a ( #47657 )
...
- Update gildas to the latest version
- Remove a patch that has been applied upstream
2018-10-02 12:49:33 +02:00
Austin Seipp
919a3b7f9c
symbiyosys: 2018.07.26 -> 2018.09.12
...
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2018-10-01 22:32:54 -05:00
Timo Kaufmann
a13eb29485
sage: 8.4.beta6 -> 8.4.beta7
2018-10-01 17:38:20 +02:00
Timo Kaufmann
bcc066b569
Merge remote-tracking branch 'upstream/master' into sage-8.4
2018-10-01 14:20:33 +02:00
R. RyanTM
77f8e10fed
picard-tools: 2.18.12 -> 2.18.14 ( #46978 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/picard-tools/versions
2018-09-29 21:03:17 +02:00
R. RyanTM
7ecc7c9220
gtkwave: 3.3.93 -> 3.3.94 ( #47048 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gtkwave/versions
2018-09-28 23:47:58 +02:00
R. RyanTM
b65fbe8fcd
gmsh: 4.0.0 -> 4.0.1 ( #47060 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions
2018-09-28 22:17:32 +02:00
Will Dietz
eb91037e7b
tree-wide: patchelf used during build -> nativeBuildInputs
...
In a few cases it wasn't clear so I left them as-is.
While visiting these moved other things to nativeBuildInputs
when it was clear they were one of these cases:
* makeWrapper
* archive utilities (in order to unpack src)
* a few of these might no longer be needed but leaving for another day
2018-09-28 11:43:16 -05:00
Timo Kaufmann
87ca34b895
Merge pull request #47043 from r-ryantm/auto-update/jmol
...
jmol: 14.29.19 -> 14.29.22
2018-09-27 12:09:01 +02:00
Timo Kaufmann
0be6ca9e71
sage: 8.4.beta5 -> 8.4.beta6
2018-09-27 12:08:15 +02:00
Timo Kaufmann
2f6b13950e
Merge remote-tracking branch 'upstream/master' into sage-8.4
2018-09-27 12:07:37 +02:00
markuskowa
6f6222c40f
openmolcas: 20180529 -> 18.09 ( #47410 )
2018-09-27 10:47:02 +02:00
Vincent Laporte
23900febe7
coq: 8.8.1 -> 8.8.2 ( #47388 )
2018-09-26 22:26:39 +02:00
Sebastien Maret
1e67ff3f05
gildas: 20180801_a -> 20180901_a ( #46159 )
...
* gildas: 20180801_a -> 20180801_b
- Update gildas
- Remove a patch that has been applied upstream
* gildas: 20180801_b -> 20180901_a
2018-09-25 16:18:53 +02:00
Dmitry Kalinkin
39c85c3bf9
xfitter: init at 2.0.0
2018-09-24 14:34:49 -04:00
Dmitry Kalinkin
3187db6e8d
root5: init at 5.34.36
2018-09-24 14:34:49 -04:00
Frederik Rietdijk
56853dc6d8
Merge pull request #45941 from NixOS/staging-next
...
Staging next
2018-09-23 09:31:28 +02:00
Orivej Desh
7545b7dcf3
platypus: 2017-03-07 -> 2018-07-22
2018-09-21 22:42:28 +00:00
Orivej Desh
cefd38b721
samtools: 1.8 -> 1.9
2018-09-21 22:42:28 +00:00
R. RyanTM
730eb9f5f2
jmol: 14.29.19 -> 14.29.22
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
2018-09-20 12:30:18 -07:00
Frederik Rietdijk
de419917a3
Merge master into staging-next
2018-09-18 18:44:48 +02:00
Timo Kaufmann
1217882907
sage: 8.4.beta4 -> 8.4.beta5
2018-09-15 17:23:14 +02:00
Timo Kaufmann
c3f652d5a8
Merge remote-tracking branch 'upstream/master' into sage-8.4
2018-09-15 17:22:11 +02:00
Chris Ostrouchov
a2bc529f22
siesta: init at 4.0.2
2018-09-14 15:40:25 -04:00
Chris Ostrouchov
2c7295ebe0
quantum-espresso: init at 6.3
2018-09-14 15:40:14 -04:00
Maximilian Bosch
2cfc0bb7ee
tamarin-prover: fix ghc 8.4 build ( #46597 )
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See https://hydra.nixos.org/build/81125645
`tamarin-prover' upstream has a patch to fix GHC 8.4 compilation (and
uses stack lts-12.1 now), but it's not released yet:
a08f6e4007
The build is divided in several derivations, therefore the patch had to
be splitted and rebased for `lib/term', `lib/theory' and `lib/utils' to
ensure that the patch applies properly during the `patchPhase'.
Addresses #45960
2018-09-13 14:11:09 +02:00
Markus J. Ankenbrand
e2df8e7c0f
seaview: init at 4.7 ( #46595 )
2018-09-13 14:10:44 +02:00
Uli Baum
1df2560dde
Merge branch 'master' into staging-next
2018-09-13 10:08:53 +02:00
R. RyanTM
e94947af0a
gromacs: 2018.2 -> 2018.3 ( #46275 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
gromacs
2018-09-12 23:07:27 +02:00
R. RyanTM
c4e8db3de0
star: 2.6.0c -> 2.6.1a ( #46176 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
star
2018-09-12 22:49:12 +02:00
Matthew Bauer
40d19d8e7c
Merge pull request #45102 from jbedo/hisat2
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hisat2: init 2.1.0
2018-09-10 15:11:58 -05:00
Matthew Bauer
05d379f3cf
Merge pull request #46211 from r-ryantm/auto-update/picard-tools
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picard-tools: 2.18.11 -> 2.18.12
2018-09-10 14:58:59 -05:00
Silvan Mosberger
10a412f251
almonds: update license
2018-09-09 02:04:34 +02:00
Markus Kowalewski
70e254d6bd
root: add license
2018-09-08 14:51:28 +02:00
Markus Kowalewski
1cff2dd135
pynac: add license
2018-09-08 14:48:19 +02:00
Markus Kowalewski
258c202565
prooftree: add license
2018-09-08 14:44:43 +02:00
Markus Kowalewski
2ed07fdb2b
drgeo: add license + homepage
2018-09-08 14:42:12 +02:00
Timo Kaufmann
db784d883c
sage: re-add pkg-config aliases
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Those were removed because they were added to openblas itself. There was
an error with that however and it will take some time until the fix
makes its way through staging. For the time being, reverting this part
of 26d5d030fe
will fix the sage build.
This commit should be reverted once
408eacbc89
is in master.
2018-09-07 21:55:41 +02:00
Timo Kaufmann
770c5b8a69
sage: 8.4.beta3 -> 8.4.beta4
2018-09-07 20:56:37 +02:00
Timo Kaufmann
4ab832d6e7
Merge remote-tracking branch 'upstream/master' into sage-8.4
2018-09-07 20:54:09 +02:00
Timo Kaufmann
7521f2863d
sage: fix numpy and scipy integration
2018-09-07 18:36:52 +02:00
Timo Kaufmann
759e495881
Merge pull request #46268 from r-ryantm/auto-update/jmol
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jmol: 14.29.17 -> 14.29.19
2018-09-07 11:32:26 +02:00
R. RyanTM
baf51804f0
jmol: 14.29.17 -> 14.29.19
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
jmol
2018-09-06 19:54:40 -07:00
R. RyanTM
f72cba212c
picard-tools: 2.18.11 -> 2.18.12
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
picard-tools
2018-09-06 14:22:26 -07:00
Profpatsch
3e45b61a99
lib/trivial: add a few examples of usage of assertMsg/assertOneOf
2018-09-06 18:14:27 +02:00
Sebastien Maret
5b58c6ac76
gildas: add alternative url for the source code ( #46145 )
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For each new release, the upstream developers of Gildas move the
source code of the previous release to a different directory. Add this
directory to the list of url to avoid build failure at each new
release.
2018-09-06 15:10:21 +01:00
Renato Garcia
318c9296fa
snakemake: add maintainers ( #46117 )
2018-09-05 21:46:17 +02:00
xeji
bf2a90298a
Merge pull request #46053 from danieldk/mxnet-fixes
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pythonPackages.mxnet: fix build
2018-09-05 16:07:56 +02:00
Sebastien Maret
b76cf0b54c
gildas: ignore clang warnings for unused command line arguments
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See #46044
2018-09-05 12:17:05 +02:00
Daniël de Kok
590ce7d1ae
mxnet: fix library dependencies.
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- mxnet now builds the open source MKL DNN library. However, this
was not included with the build.
- mxnet builds its own OpenMP library, even when OpenMP is provided
by the system. This leads to problems, so remove the included
OpenMP implementation:
https://github.com/apache/incubator-mxnet/pull/12160
2018-09-04 20:27:25 +02:00
Sebastien Maret
3bc898035d
gildas: fix makefile rule
2018-09-04 16:05:44 +02:00
Vladimír Čunát
1428d00aa4
Merge branch 'master' into staging-next
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Hydra: ?compare=1477053
2018-09-04 13:06:45 +02:00
Daniël de Kok
93a5947158
mxnet: 1.1.0 -> 1.2.1 ( #46026 )
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Update and fix the build:
- Perl is a build-time requirement.
- Fix hardcoded /bin/bash invocation.
2018-09-04 11:37:54 +02:00
Ryan Mulligan
7b54a50e97
Merge pull request #45730 from Helkafen/snakemake
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snakemake: init at 5.2.2
2018-09-02 07:54:13 -07:00
Timo Kaufmann
46e653673e
sage: 8.4.beta2 -> 8.4.beta3
2018-09-02 12:42:44 +02:00
Frederik Rietdijk
b910b697f6
Merge master into staging
2018-09-02 12:10:33 +02:00
xeji
a3434cf4e5
Merge pull request #45921 from markuskowa/homepages
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Cleanup homepage links
2018-09-02 08:39:30 +02:00
Markus Kowalewski
ee54f1f817
plm: remove dead homepage link, mark as broken
2018-09-02 01:46:25 +02:00
Markus Kowalewski
5cf25dded7
symmetrica: update homepage
2018-09-02 01:46:25 +02:00
Markus Kowalewski
c184150a22
jags: update homepage + fix license
2018-09-02 01:46:18 +02:00
Markus Kowalewski
e5974ddaec
jonprl: update homepage
2018-09-02 00:36:01 +02:00
Vladimír Čunát
2d6179d1e8
Merge branch 'master' into staging
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A few trivial conflicts due to *Platforms mass replace.
2018-09-01 17:38:18 +02:00
Vladimír Čunát
342d3db703
Merge branch 'staging-next'
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The failure diff seems good-enough on Hydra now.
2018-09-01 17:02:15 +02:00
Sebastian Meric de Bellefon
93ce77af40
python.pkgs.snakemake: init at 5.2.2
2018-09-01 09:18:19 -04:00
Gabriel Ebner
da3326902a
vampire: fix nondeterministic hash
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Probably related to #8567
2018-09-01 15:03:31 +02:00
R. RyanTM
7fdaf76869
verilator: 3.924 -> 3.926 ( #45797 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
verilator
2018-09-01 12:14:00 +02:00
Robert Schütz
93550cbddf
Merge branch 'master' into staging-next
2018-08-31 17:32:48 +02:00
John Ericson
2c2f1e37d4
reewide: Purge all uses stdenv.system
and top-level system
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It is deprecated and will be removed after 18.09.
2018-08-30 17:20:32 -04:00
Vladimír Čunát
8fc6472ace
gnome-documents, tlaplus: fix glib references
2018-08-30 19:47:41 +02:00
Vladimír Čunát
b71b222b4c
Merge #44910 : cmake: 3.11.2 -> 3.12.1
2018-08-30 16:04:52 +02:00
Vladimír Čunát
19c68fe28c
Merge branch 'master' into staging
2018-08-30 12:25:43 +02:00
Frederik Rietdijk
6038628ea5
Merge master into staging-next
2018-08-29 20:54:55 +02:00
R. RyanTM
e301589013
gmsh: 3.0.6 -> 4.0.0 ( #45592 )
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gmsh/versions .
2018-08-27 16:06:28 +02:00
Frederik Rietdijk
7945295410
Merge master into staging
2018-08-27 08:21:50 +02:00
Timo Kaufmann
c614c15f93
Merge pull request #45257 from timokau/openblas-pc
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openblas: add pkg-config aliases
2018-08-26 20:13:19 +02:00
Timo Kaufmann
0e4160a3a1
pythonPackages.sympy: 1.1.1 -> 1.2
2018-08-26 19:56:44 +02:00
Timo Kaufmann
1b42a1ba1e
sage: 8.4.beta1 -> 8.4.beta2
2018-08-26 13:09:22 +02:00
Frederik Rietdijk
c71942eb7e
Merge pull request #44752 from costrouc/costrouc/lammps-update
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material science packages (init and update): lammps, python - ase, pymatgen-lammps, lammps-cython, dftfit
2018-08-25 19:03:36 +02:00
wucke13
b7e695461e
apmplanner2: fixed wrong path in .desktop file
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The `apmplanner2.desktop` file defaults to `/usr/share/...` regardless which out
prefix is given to make. So I chose to fix it manually.
2018-08-25 00:39:58 +02:00
Vladimír Čunát
7db611f2af
Merge branch 'staging'
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Includes libX11 security update.
2018-08-24 09:19:43 +02:00
Bignaux Ronan
70d5f16898
astrolabe-generator: init at 3.3 ( #45429 )
2018-08-23 22:35:05 +02:00
Joachim F
0d80f9659c
Merge pull request #45305 from wucke13/apmplanner2
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apmplanner2: init at 2.0.26
2018-08-23 14:07:45 +00:00
Matthew Bauer
f7bc33abf0
Revert "treewide: fixup breakage due to absolute compiler path"
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This reverts commit d0888d1503
.
2018-08-22 01:14:53 +02:00
xeji
6216f5da04
Merge pull request #45263 from r-ryantm/auto-update/bowtie2
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bowtie2: 2.3.4.1 -> 2.3.4.2
2018-08-21 19:51:36 +02:00
Uli Baum
c47aafde87
bowtie2: broken on aarch64
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never built as far back as hydra logs go.
2018-08-21 19:11:37 +02:00
Timo Kaufmann
26d5d030fe
openblas: add pkg-config aliases
2018-08-21 16:39:57 +02:00
Vladimír Čunát
765d695b89
Merge branch 'staging-next'
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Security fixes for a few packages are included.
2018-08-21 15:36:02 +02:00
Vladimír Čunát
d0888d1503
treewide: fixup breakage due to absolute compiler path
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Some packages just can't handle them #44767 . It was tempting to try
to abstract this in some way, but I didn't do that ATM.
2018-08-21 12:34:33 +02:00
xeji
54ff14b6f3
Merge pull request #45399 from markuskowa/license-8
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Add licenses
2018-08-21 12:05:10 +02:00
Jörg Thalheim
736db8db10
Merge pull request #44951 from rittelle/eagle
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eagle: 7.7 -> 9.1.2
2018-08-21 10:51:13 +01:00
wucke13
b4531605c3
apmplanner2: init at 2.0.26
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I would like to see more Ground Control Stations in the nixpkgs.
2018-08-21 02:02:51 +02:00
Markus Kowalewski
a1129ef9cb
glsurf: add license
2018-08-20 21:15:16 +02:00
Markus Kowalewski
3c1819fcce
ginac: add license
2018-08-20 21:02:45 +02:00
Joachim F
6755ab8b34
Merge pull request #44250 from jbedo/strelka
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strelka: init 2.9.5
2018-08-20 06:24:15 +00:00
Justin Bedo
27960b6acf
strelka: init 2.9.5
2018-08-20 08:58:22 +10:00
rittelle
9e4d2d723a
eagle: 7.7 -> 9.1.2
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Updated eagle to version to 9.1.2 while keeping version 7.7 as eagle7.
2018-08-19 15:36:08 +02:00
Jörg Thalheim
4609e3abf2
Merge pull request #45303 from markuskowa/molden-up
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molden: 5.7 -> 5.8.2
2018-08-19 13:32:28 +01:00
Markus Kowalewski
04d283ecda
molden: patch to deactivate extension installer script
2018-08-19 11:29:31 +02:00
Orivej Desh
65663f883c
msgpack: rename from libmsgpack
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The project does not use the name "libmsgpack". It variously uses "msgpack" and
"msgpack-c", and "msgpackc" for the name of the library.
2018-08-18 23:19:54 +00:00
Markus Kowalewski
79bf57ca23
molden: 5.7 -> 5.8.2
2018-08-18 14:24:39 +02:00
Vladimír Čunát
209730208a
Merge branch 'staging-next'
2018-08-17 20:51:31 +02:00
Jörg Thalheim
5cb9703a8f
Merge pull request #45173 from r-ryantm/auto-update/octopus
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octopus: 8.1 -> 8.2
2018-08-17 16:10:43 +01:00
R. RyanTM
73f1448a1f
bowtie2: 2.3.4.1 -> 2.3.4.2
...
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/bowtie2/versions .
2018-08-17 06:50:10 -07:00
Justin Bedo
9bd7a4f520
hisat2: init 2.1.0
2018-08-17 23:03:42 +10:00