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5637 Commits

Author SHA1 Message Date
Valentin Heidelberger
d0199179ba pythonPackages.pynacl: 1.2.1 -> 1.3.0 2018-09-27 13:26:26 +02:00
Markus Kowalewski
676825f6fe
mpi4py: Add patch to skip broken tests. 
Fixes compilation with openmpi-3.1.2
 2018-09-26 23:39:18 +02:00
Markus Kowalewski
be02ab2f30
openmpi: 3.1.0 -> 3.1.2 2018-09-26 23:38:55 +02:00
aszlig
65d0b082f3
Merge Paperwork update to version 1.2.4 (#46487) 
Thanks to @symphorien for this work, which apart from the update itself
includes a few more fixes and cleanups.

I've tested building and running the upgraded Paperwork and while I
haven't done extensive testing on every little feature it seems to work
so far.

The changes also include an addition to fetchFromGitLab, which allows to
specify a group.

Merges: #46487
 2018-09-25 23:13:08 +02:00
Igor Tarasov
292bb74552 python.pkgs.grpcio: 1.14.1 -> 1.15.0 2018-09-25 19:06:07 +00:00
John Ericson
8cbf56058a
Merge pull request #47355 from obsidiansystems/numpy-fortran 
numpy, scipy: Fix some nativeBuildInputs
 2018-09-25 14:45:40 -04:00
Dylan Simon
c77e8096ee python.pkgs.cheroot: fix setup patch URL (#47320) (#47354) 
Fix to specific patch revision rather than latest
 2018-09-25 20:20:57 +02:00
John Ericson
c701d6cb21 Merge remote-tracking branch 'upstream/master' into staging 2018-09-25 14:20:27 -04:00
John Ericson
84fc814982 scipy: gfortran should be in nativeBuildInputs 2018-09-25 14:08:41 -04:00
John Ericson
cfbfb9440c numpy: gfortran and pytest should be nativeBuildInputs 2018-09-25 14:03:30 -04:00
Jörg Thalheim
725b57ba11
Merge pull request #47283 from flokli/elasticsearch-dsl-6.2.1 
pythonPackages.elasticsearch-dsl: 0.0.9 -> 6.2.1
 2018-09-24 20:40:21 +01:00
Vladimír Čunát
3a09a4b579
Merge branch 'master' into staging 
Hydra: ?compare=1480463
 2018-09-24 21:18:23 +02:00
Florian Klink
18c7fbd78d pythonPackages.elasticsearch-dsl: 0.0.9 -> 6.2.1 2018-09-24 21:08:31 +02:00
Edward Tjörnhammar
491a580716
pythonPackages.sharedmem: init at 0.3.5 2018-09-24 17:00:55 +02:00
Jörg Thalheim
db05dd8b6d
Merge pull request #47268 from Ma27/fix-py3exiv2 
python3Packages.py3exiv2: fix build
 2018-09-24 13:52:43 +01:00
Maximilian Bosch
50f23da8e6
python3Packages.py3exiv2: fix build 
Recent boost versions name their `python3` shared objects
`boost_python3x` rather than `boost_python3`.

See https://hydra.nixos.org/build/80712295
Addresses #45960
 2018-09-24 14:32:50 +02:00
Jörg Thalheim
3e270ff919
Merge pull request #46668 from mbode/doitlive_4 
doitlive: 3.0.3 -> 4.0.1
 2018-09-24 13:26:27 +01:00
Maximilian Bosch
fbeb94dd46
Revert "python: ldappool: 2.2.0 -> 2.3.0" 
This reverts commit 29acc8339f.
 2018-09-24 13:35:05 +02:00
Dmitry Kalinkin
cd1b9d93e6 pyjet: init at 1.3.0 (#47243) 2018-09-23 22:40:29 +02:00
Maximilian Bosch
5ad7aedf63 pythonPackages.pyftgl: fix build (#47232) 
See https://hydra.nixos.org/build/80705583

Recent `boost` versions with `python` enabled have changed their naming
scheme for `boost_python` shared objects which causes issues with the
proper linking when building `pyftgl`.

Previously the library was named `boost_python3`, no it's named
`boost_python36` for current python (3.6.x).

The same issue applies for the `python2`.

Addresses #45960
 2018-09-23 22:39:21 +02:00
Andrew Dunham
e141f7cd2f pythonPackages.flask_assets: fix tests (#47203) 2018-09-23 10:02:51 +02:00
Dmitry Vyal
f7f8b60ace pytorch-0.4 rpath fix, some tests reenabled 2018-09-23 09:36:32 +02:00
Frederik Rietdijk
14673d61ed Merge master into staging 2018-09-23 09:33:09 +02:00
Frederik Rietdijk
56853dc6d8
Merge pull request #45941 from NixOS/staging-next 
Staging next
 2018-09-23 09:31:28 +02:00
Frederik Rietdijk
343ac4d2fc
Merge pull request #42619 from nyanloutre/pythonPackages.block-io 
pythonPackages.block-io: init at 1.1.8
 2018-09-23 09:27:51 +02:00
Maximilian Bode
ff2dddac7d pythonPackages.click-completion: init at 0.4.1 2018-09-22 09:52:49 +02:00
Maximilian Bode
af7adc206d pythonPackages.shellingham: init at 1.2.6 2018-09-22 09:52:48 +02:00
Maximilian Bode
be1f39244f pythonPackages.click-didyoumean: init at 0.0.3 2018-09-22 09:52:48 +02:00
Orivej Desh
e78cf6ecba python.pkgs.pysam: 0.13.0 -> 0.15.1 2018-09-21 22:48:56 +00:00
Tobias Happ
d7b8f68c05 pythonPackages.dependency-injector: 3.13.1 -> 3.13.2 (#47139) 2018-09-21 20:08:02 +02:00
Matthew Bauer
92158a4b2c
Merge pull request #45776 from bkchr/gst_1_14_2 
Gstreamer: 1.14.0 -> 1.14.2
 2018-09-20 18:02:58 -05:00
xeji
9c02914b42
pythonPackages.circus: fix build, add meta (#47066) 2018-09-21 00:18:13 +02:00
xeji
f3a0c8a3aa
pythonPackages.nilearn: disable still failing tests (#46918) 
A previous attempt to fix tests failing on some machines (#46850)
was unsuccessful, they still failed on Hydra sometimes while
succeeding locally. Revert #46850 and disable these tests instead.
 2018-09-19 23:50:22 +02:00
Assassinkin
aaa3e3f0b4 pythonPackages.osmnx: init at 0.8.2 2018-09-19 16:14:37 +01:00
xeji
970393c34a
pythonPackages.nilearn: fix test_signal tests (#46850) 
These tests failed on some machines, probably due to lower arithmetic
presicion. Reduce required precision from 13 to 8 decimal digits.
 2018-09-19 16:15:02 +02:00
Jörg Thalheim
b224eef108 python3.pkgs.typeguard: fix builds by applying utf-8 locales 
ZHF #45960
 2018-09-19 15:11:31 +01:00
Benjamin Hipple
426c2856d7 pythonPackages.python-binance: init at 0.7.0 
Library for communicating with the Binance REST API.
 2018-09-18 21:44:27 -04:00
John Ericson
7319013ea1 Merge remote-tracking branch 'upstream/master' into staging 2018-09-18 16:55:42 -04:00
Frederik Rietdijk
3126be4308
Merge pull request #46627 from costrouc/costrouc/dask-extensions 
pythonPackages.dask-*: init
 2018-09-18 19:24:49 +02:00
Assassinkin
de9fb389f4 pythonPackages.fuse: 0.2.1 -> 0.3.1 | refactor | python3 support 2018-09-18 19:05:34 +02:00
Roger Qiu
31554915a4 pythonPackages.bjoern: init at 2.2.2 2018-09-18 18:51:51 +02:00
Jörg Thalheim
ad11711387
Merge pull request #46829 from adamtulinius/patch-3 
pythonPackages.gmpy: update homepage
 2018-09-18 13:55:02 +01:00
Adam Finn Tulinius
c7e35b256c
pythonPackages.gmpy2: update homepage 2018-09-18 14:29:48 +02:00
Adam Finn Tulinius
74d1f4c20b
pythonPackages.gmpy: update homepage 2018-09-18 14:25:28 +02:00
Vladyslav Mykhailichenko
336a913f42 pythonPackages.pgspecial: 1.8.0 -> 1.11.2 2018-09-18 14:00:59 +03:00
Jörg Thalheim
7d39e99a1e
Merge pull request #46316 from erosennin/psycopg-2.7.5 
pythonPackages.psycopg2: 2.7.1 -> 2.7.5
 2018-09-18 11:33:06 +01:00
Jörg Thalheim
080b3ef0b5 python2.pkgs.mypy_extensions: also enable python2 2018-09-18 08:05:02 +01:00
Jörg Thalheim
bab28c26f1
Merge pull request #46788 from teto/mypy630 
python3Packages.mypy: 0.620 -> 0.630
 2018-09-18 08:01:53 +01:00
Maximilian Bosch
5f2eacccf6 pythonPackages.mahotas: skip test_moments.test_normalize and test_texture.test_haralick3d testcase (#46793) 
As stated in #46368, this package seems to have issues with impure tests
(reported in https://github.com/luispedro/mahotas/issues/97).

Unfortunately the `release-18.09` job on Hydra fails at the attempt to
build this package since `test_moments.test_normalize1` and
`test_texture.test_haralick3d` breaks. Until
the root cause is identified, we skip the disabled tests to ensure that
the resulting package is not entirely broken (which can't be confirmed
with `doCheck = false`).

See https://hydra.nixos.org/job/nixos/release-18.09/nixpkgs.python27Packages.mahotas.x86_64-linux
See https://hydra.nixos.org/job/nixos/release-18.09/nixpkgs.python36Packages.mahotas.x86_64-linux
See https://logs.nix.ci/?key=nixos/nixpkgs.46793&attempt_id=b85a638d-dcb0-41d3-ab2a-9616a3bb0175

/cc @xeji @luispedro
 2018-09-17 21:33:47 +02:00
Matthieu Coudron
676ceb81b7 python3Packages.mypy: 0.620 -> 0.630 
Now requires mypy_extensions so added it as well.
 2018-09-18 00:31:41 +09:00
Uli Baum
a66c00d780 pythonPackages.dendropy: fix build 
Build failed after update to 4.4.0 because the tests are incorrectly
packages in the pypi version.
Switch to upstream github repo, fix tests, disable failing test cases
 2018-09-16 17:37:28 +02:00
Jörg Thalheim
f03e9545eb
Merge pull request #46732 from worldofpeace/asyncssh/1.14.0 
python.pkgs.asyncssh: 1.13.3 -> 1.14.0
 2018-09-16 11:22:16 +01:00
worldofpeace
710b3d678b python.pkgs.asyncssh: 1.13.3 -> 1.14.0 2018-09-16 04:48:14 -04:00
Vincent Laporte
5b8b9a08e7
pythonPackages.libnacl: fix build on darwin 2018-09-16 06:24:49 +00:00
xeji
13c500ae16
pythonPackages.pyodbc: fix build (#46703) 
Build with unixODBC instead of libiodbc, see discussion in
https://github.com/mkleehammer/pyodbc/issues/444
 2018-09-15 23:13:51 +02:00
Maximilian Bode
2438ceb5b4 salt: fix darwin build by specifying dependency on tornado 4 
/cc ZHF #45961
 2018-09-15 10:09:36 +02:00
Symphorien Gibol
46cd67e6a1 pythonPackages.{pyocr,pypillowfight}: fix homepage 2018-09-14 14:32:32 +02:00
Symphorien Gibol
cd599c8fa6 pythonPackages.pypillowfight: 0.2 -> 0.2.4 2018-09-14 14:32:32 +02:00
Symphorien Gibol
5314a74ee6 pythonPackages.pyocr: 0.4.7 -> 0.5.3 2018-09-14 14:32:31 +02:00
xeji
f1f8ce80c4
Merge pull request #46608 from xeji/p/python-fixes-2 
pythonPackages: fix some broken builds
 2018-09-14 10:56:59 +02:00
Chris Ostrouchov
bd6873774e
pythonPackages.dask-xgboost: init at 0.1.5 2018-09-13 16:42:25 -04:00
Chris Ostrouchov
72bd196b89
pythonPackages.dask-image: init at 0.1.1 2018-09-13 16:41:58 -04:00
Chris Ostrouchov
ce4b7154ac
pythonPackages.slicerator: init at 0.9.8 2018-09-13 16:41:34 -04:00
Chris Ostrouchov
1a67a15c6f
pythonPackages.pims: init at 0.4.1 2018-09-13 16:41:13 -04:00
Chris Ostrouchov
41cd200b64
pythonPackages.dask-jobqueue: init at 0.4.0 2018-09-13 16:40:58 -04:00
Chris Ostrouchov
32cb956fea
pythonPackages.dask-glm: init at 0.1.0 2018-09-13 16:40:58 -04:00
Chris Ostrouchov
93cdaaa3d4
pythonPackages.dask-ml: init at 0.10.0 2018-09-13 16:40:58 -04:00
Chris Ostrouchov
e5cd420e73
pythonPackages.distributed: refactor move to fetchPypi 
There is a bug when using git repo in that the package does not get a
version (shows up as `0+unknown`). Using pypi fixes this issue allows
allows for auto upgrades.
 2018-09-13 15:10:40 -04:00
Uli Baum
d9bdd64f04 pythonPackages.nilearn: fix tests 
disable failing tests
 2018-09-13 19:40:29 +02:00
Uli Baum
be12bb81aa pythonPackages.wordfreq: 2.0 -> 2.2.0, fix build 
Previous version didn't build (test failure).
Update to latest, tests use pytest now, disable failing tests.
 2018-09-13 18:16:34 +02:00
Uli Baum
0bda601ee5 pythonPackages.pytest-rerunfailures: fix build 
some tests fail since pytest 3.7.2 -> 3.7.4 update, disable them
 2018-09-13 17:48:38 +02:00
Uli Baum
781eaa1377 pythonPackages.flask-pymongo: fix build 
add missing dependency: vcversioner
 2018-09-13 17:25:38 +02:00
Uli Baum
9e4b0b795c pythonPackages.eve: fix build, drop incorrect dependencies 
Build failed because of dependency Flask-PyMongo, which actually
isn't a dependency of eve as they have their own flask_pymongo code.

- Drop incorrect dependency flask-pymongo
- Drop redunant dependencies already propageted by flask:
  itsdangerous, werkzeug, jinja2
- Drop dependency markupsafe, not required any more
 2018-09-13 17:09:51 +02:00
Uli Baum
abe97e9446 pythonPackages.daphne: 2.1.0 -> 2.2.2 
Update, re-enable all tests on linux, disable tests on darwin.
This fixes the build of pythonPackages.channels
 2018-09-13 16:45:27 +02:00
Uli Baum
b54677969b pythonPackages.zodb: fix tests 
Tests failed after `persistent` was updated to 4.4.
Apply an upstream patch to fix them.
 2018-09-13 13:35:34 +02:00
xeji
2bc08ce0f5
Merge pull request #46488 from xeji/p/python-fixes 
pythonPackages.{pydub,readme_renderer,pyfakefs,us,restview}: fix build
 2018-09-13 11:38:20 +02:00
Uli Baum
6dc57134da pythonPackages.restview: fix tests 
Failed after readme_renderer was updated. Apply an upstream patch.
 2018-09-13 11:21:19 +02:00
xeji
68b7de9e2e
pythonPackages.BTrees: fix build (#46588) 
a test case failed since the update to 4.5.1, disable it
 2018-09-13 02:32:37 +02:00
xeji
decd819911
Merge pull request #46556 from rnhmjoj/lastpass 
qutebrowser: patch all python scripts
 2018-09-12 23:51:40 +02:00
Robert Schütz
c15a94b6d1
Merge pull request #45644 from jluttine/update-rlp-1.0.2 
pythonPackages.rlp: 1.0.1 -> 1.0.2 (with some new deps)
 2018-09-12 12:55:29 +02:00
Jörg Thalheim
63668d33b2 python-language-server: 0.19.0 -> 0.21.2 2018-09-12 09:03:08 +01:00
Jörg Thalheim
e4393102e6 python-jsonrpc-server: init at 0.0.1 2018-09-12 09:03:08 +01:00
Jörg Thalheim
8d4afa5f2e
pythonPackage.backports-shutil-which: enable tests 2018-09-12 09:04:36 +03:00
Jaakko Luttinen
d0ce8834ae
pythonPackages.libagent: fix propagatedBuildInputs 2018-09-12 09:04:36 +03:00
Jaakko Luttinen
80b64a2e04
pythonPackage.backports-shutil-which: init at 3.5.1 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
c9bf7f67b9
pythonPackage.pymsgbox: init at 1.0.6 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
5c9db2f02f
pythonPackages.ledgerblue: fix build inputs 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
38e86a8f1e
pythonPackages.python-u2flib-host: init at 3.0.3 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
f053daf36c
pythonPackages.rlp: fix build 2018-09-12 08:44:19 +03:00
Jaakko Luttinen
9f8e6148c5
pythonPackages.eth-utils: init at 1.2.0 2018-09-12 08:44:18 +03:00
Jaakko Luttinen
541a13ca0a
pythonPackages.eth-typing: init at 1.1.0 2018-09-12 08:44:18 +03:00
rnhmjoj
d117e3ccd8
python.pkgs.construct: 2.8.16 -> 2.9.45 2018-09-12 03:35:26 +02:00
rnhmjoj
dca577a36c
python.pkgs.pykeepass: init at 3.0.2 2018-09-12 03:35:25 +02:00
rnhmjoj
75b2058aff
python.pkgs.pyreadability: init at 0.4.0 2018-09-12 03:23:04 +02:00
rnhmjoj
e281f0e686
python.pkgs.tldextract: init at 2.2.0 2018-09-12 03:23:04 +02:00
rnhmjoj
99dad9d7f0
python.pkgs.requests-file: init at 1.4.3 2018-09-12 03:23:04 +02:00
Maximilian Bosch
a25dcb6607 python3Packages.pyowm: fix python3 build (#46549) 
See https://hydra.nixos.org/build/80714323

Version 2.9 requires `geojson==2.x'. To allow 2.4, the constraint
required some patching using `substituteInPlace'.

Addresses #45960
 2018-09-12 01:23:36 +02:00
Ryan Mulligan
8d4248a4cb
Merge pull request #44657 from costrouc/costrouc/dask-distributed 
pythonPackages.distributed: 1.15.1 -> 1.22.1
 2018-09-11 16:05:58 -07:00
Chris Ostrouchov
027b9beb58 fixup! merge: fixing changes with nixpkgs since pull-request 2018-09-11 17:14:12 -04:00
Christopher Ostrouchov
dac171dd5d
merge: fixing changes with nixpkgs since pull-request 
- pytest-timeout: no longer requires patch
 - joblib: was improperly merged with the github merge tool (never
   using again)
 2018-09-11 14:24:59 -04:00