332 Commits

Author	SHA1	Message	Date
Vladimír Čunát	f8a8fc6c7c	Revert "Merge branch 'staging-next'" ... This reverts commit 41af38f372, reversing changes made to f0fec244ca. Let's delay this. We have some serious regressions.	2019-09-21 20:05:09 +02:00
Izorkin	329a88efa7	treewide: replace mysql.connector-c to libmysqlclient	2019-09-09 15:55:34 +03:00
volth	7b8fb5c06c	treewide: remove redundant quotes	2019-09-08 23:38:31 +00:00
cfhammill	8e5aae5a19	Fix broken builds for rgdal and sf R packages ... Builds were failing to include PROJ, depending on proj.dev appears to fix it.	2019-09-02 16:23:24 +03:00
Peter Simons	8ac6b77eff	Merge pull request #66204 from jabranham/r-pkgs ... R: Update CRAN and bioconductor packages	2019-08-07 10:24:37 +02:00
Alex Branham	eab786451f	R: Update CRAN and bioconductor packages	2019-08-06 08:49:39 -05:00
Dominic Steinitz	4788c7eb28	Ensure sundialr builds on macos.	2019-08-06 13:45:44 +01:00
Frederik Rietdijk	7cf5909fad	Merge staging-next into staging	2019-07-09 15:44:08 +02:00
Thomas Tuegel	51d78034a1	wrapQtAppsHook: Remove ad hoc Qt wrappers	2019-07-05 10:42:08 -05:00
Alex Branham	46bca1d643	R: Update CRAN and bioconductor packages	2019-07-02 15:48:06 -05:00
Alex Branham	00b202e34a	rPackages.git2r: Use system libgit2 ... Otherwise git2r builds a bundled libgit2	2019-06-14 10:05:07 -05:00
c0bw3b	9cb260d091	[treewide] delete unused patches	2019-05-04 19:52:24 +02:00
Alex Branham	0a80d3dc82	R: update CRAN and Bioconductor package sets ... Closes https://github.com/NixOS/nixpkgs/pull/59186.	2019-04-11 20:37:18 +02:00
Peter Simons	3c9ff308e7	Merge pull request #58467 from mnacamura/r-sys ... r-sys: remove obsolete dependency	2019-03-28 12:42:19 +01:00
Mitsuhiro Nakamura	157921f2e7	rPackages: fix missing dependency to libiconv	2019-03-28 12:11:47 +09:00
Mitsuhiro Nakamura	d07c3139ed	r-sys: remove obsolete dependency	2019-03-28 11:20:04 +09:00
Alex Branham	8dcba2b842	R: update CRAN and Bioconductor package sets ... Closes https://github.com/NixOS/nixpkgs/pull/57423.	2019-03-14 19:50:37 +01:00
Markus Ankenbrand	7fcfbcdbc9	rPackages.phytools: fix installation	2019-03-06 11:39:48 +01:00
Alex Branham	ec03ed450c	update R package set ... Closes https://github.com/NixOS/nixpkgs/pull/55462.	2019-02-10 11:16:19 +01:00
Alex Branham	48541ab6b9	R: update CRAN and BIOC package sets ... Closes https://github.com/NixOS/nixpkgs/pull/53414.	2019-01-08 09:34:37 +01:00
Alex Branham	6f7459b40b	R: update CRAN package set	2018-12-12 11:17:25 -06:00
Edmund Wu	a898f88d57	rstudioWrapper: include desktop file	2018-12-07 16:44:01 -05:00
Joachim F	f0dbbdf970	Merge pull request #51581 from joachifm/rWrapper-local-runCommand ... Implement R wrappers as local-only runCommand	2018-12-07 09:17:44 +00:00
Christian Kauhaus	3b445042ac	rPackages.littler: fix build (#51282) ... littler gives a wrapped called `r` (or `lr` for non-case-preserving systems like Darwin) which works as shebang or pipe target. The build was completely broken before (missing deps). Symlink executables and manpage into standard locations so that this packages also works in `environment.systemPackages`.	2018-12-06 17:22:31 +01:00
Joachim Fasting	21d83e5b11	rstudioWrapper: use runCommand, local build only ... This seems more appropriate for a wrapper generator.	2018-12-05 20:59:41 +01:00
Joachim Fasting	d2b467a2de	rWrapper: use runCommand, local build only ... This seems more appropriate for a wrapper generator.	2018-12-05 20:59:35 +01:00
Timo Kaufmann	63b39af496	pythonPackages.rpy2: various fixes (#51084) ... - make sure libreadline is found at runtime - make sure python libraries are found at runtime - add libraries necessary to pass the testsuite and standard libraries	2018-11-27 18:24:37 +01:00
Massimo Redaelli	5afe1e7c70	rstudio: fix qt plugins not found	2018-11-23 23:10:29 +01:00
Averell Dalton	25e68e3048	r-ps: patchShebangs in ./configure to fix build	2018-11-02 23:02:04 +01:00
Peter Simons	c9e1380626	r-nloptr: fix build by adding pkgconfig	2018-11-02 17:50:18 +01:00
Peter Simons	9b63cc6313	r-rlang: patch shebang in configure script to fix the build	2018-11-02 17:50:18 +01:00
Tom McLaughlin	cac5c9401e	R: update CRAN and BIOC package sets ... Closes https://github.com/NixOS/nixpkgs/pull/49430.	2018-11-02 17:50:18 +01:00
Rob Vermaas	3f719b0fad	Fix build for rPackages.units ... (cherry picked from commit 1eb1fec3ae)	2018-10-08 12:53:43 +02:00
ivanbrennan	989f24befc	git2r: add SSH support ... When building the devtools R module, which depends on git2r, it reports that libssh2 cannot be found, and falls back to building without SSH support. Adding libssh2.dev to git2r's native build inputs fixes this.	2018-09-11 16:39:20 -04:00
Ryan Mulligan	73ae8e53e2	rPackages.RPostgres: fix configure paths and includes ... closes #46208	2018-09-09 14:37:28 -07:00
Mitsuhiro Nakamura	5e42a081a3	r-jqr: fix build (#45333)	2018-08-20 00:08:28 +02:00
volth	e6d3c65442	r-packages: fix regression	2018-08-04 06:19:08 +00:00
Mitsuhiro Nakamura	0a541aa38c	rPackages.buildRPackage: fix error if requireX is missing	2018-08-03 01:08:35 +09:00
Mitsuhiro Nakamura	559997179d	rPackages: export buildRPackage	2018-08-03 01:08:07 +09:00
volth	52f53c69ce	pkgs/*: remove unreferenced function arguments	2018-07-21 02:48:04 +00:00
Markus Ankenbrand	775fd4bfba	rPackages.haven: fix installation	2018-07-12 11:07:27 +02:00
Mitsuhiro Nakamura	c072024409	rPackages.reprex: fix build	2018-07-11 23:16:49 +09:00
Markus Ankenbrand	89f44c1314	rPackages.rhdf5: fix installation ... Fix #43285	2018-07-10 16:38:11 +02:00
Peter Simons	03476783a5	R: fix evaluation errors	2018-07-07 12:10:46 +02:00
Peter Simons	49c649d573	R: update CRAN package set to snapshot 2018-07-06	2018-07-07 12:10:46 +02:00
Peter Simons	d984656a2a	R: update package set ... The CRAN snapshot is at "2018-07-03". Bioc is now at 3.8.	2018-07-07 12:10:46 +02:00
Markus Ankenbrand	9eeea0b9ef	rPackages.rhdf5: fix installation ... Fix #42878	2018-07-02 18:51:18 +02:00
Daiderd Jordan	654960c1cd	Merge pull request #42290 from mnacamura/r-igraph-darwin ... rPackages.igraph: fix Darwin build	2018-06-20 19:52:36 +02:00
Mitsuhiro Nakamura	f972a30f16	rPackages.igraph: fix Darwin build	2018-06-20 11:08:29 +09:00
Mitsuhiro Nakamura	dada18527a	rPackages.RcppEigen: fix Darwin build	2018-06-20 10:59:18 +09:00