Commit Graph

3433 Commits

Author SHA1 Message Date
Mario Rodas
c9ce292597
Merge pull request #84383 from r-ryantm/auto-update/gmsh
gmsh: 4.5.4 -> 4.5.6
2020-04-05 20:03:05 -05:00
R. RyanTM
b43965986f gmsh: 4.5.4 -> 4.5.6 2020-04-05 19:28:16 +00:00
Vincent Laporte
d6a8d0ca5b coq_8_11: 8.11.0 → 8.11.1 2020-04-05 15:32:32 +02:00
Frederik Rietdijk
866c5aa090 Merge master into staging-next 2020-04-05 08:33:39 +02:00
Jan Tojnar
418628e162
dsview: fix build
It was using libusb-compat instead of libusb1, and the former no longer propagates the latter.
2020-04-05 01:13:14 +02:00
Timo Kaufmann
02b1f2a2de
Merge pull request #83224 from shnarazk/cadical-pr
cadical: init at 1.2.1
2020-04-04 15:44:04 +00:00
Narazaki, Shuji
c5a12e33d2 cadical: init at 1.2.1 2020-04-05 00:22:36 +09:00
Jan Tojnar
08cf27e5d9
libsigrok4dsl: fix build
It was using libusb-compat instead of libusb1, and the former no longer propagates the latter.
2020-04-04 10:50:34 +02:00
Dmitry Kalinkin
99a236b477
Merge pull request #83914 from cgevans/gwyddion-darwin
gwyddion: support darwin
2020-04-01 21:44:21 -04:00
Constantine Glen Evans
cacbbe92bf
gwyddion: add darwin support
Gwyddion will build on Darwin, but gnome2.gtkglext is broken there,
and so I am disabling it as an optional dependency here when building
on Darwin.
2020-04-01 17:50:36 -07:00
R. RyanTM
92c8881358 picard-tools: 2.22.0 -> 2.22.2 2020-04-01 17:29:55 +00:00
Timo Kaufmann
83fd89945d
Merge pull request #79661 from luc65r/pkg/cemu
cemu: init at 1.3
2020-03-31 15:17:33 +00:00
R. RyanTM
3017e6989f deeptools: 3.3.1 -> 3.4.1 2020-03-30 21:47:32 -07:00
R. RyanTM
cff5adc2fb
snakemake: 5.10.0 -> 5.13.0 (#83839) 2020-03-31 00:39:00 -04:00
R. RyanTM
bd245a755f stacks: 2.41 -> 2.52 2020-03-30 16:13:02 -07:00
Ryan Mulligan
d8c21cb4bc
Merge pull request #83746 from r-ryantm/auto-update/marvin
marvin: 20.6.0 -> 20.9.0
2020-03-30 06:14:11 -07:00
R. RyanTM
1d349b8512 marvin: 20.6.0 -> 20.9.0 2020-03-30 04:02:45 +00:00
luc65r
8edd400bfb
rofi-calc: init at 1.6 (#83136)
Also:
* maintainers: add albakhamj
* maintainers: add luc65r
* rofi: add plugins argument to wrapper

Co-authored-by: Maciej Krüger <mkg20001@gmail.com>
2020-03-30 01:18:56 +02:00
Maximilian Bosch
9e7c54325e
stellarium: 0.19.3 -> 0.20.0
https://github.com/Stellarium/stellarium/releases/tag/v0.20.0
2020-03-29 17:56:35 +02:00
Jörg Thalheim
d04396da8b
Merge pull request #82852 from Mic92/cross-build-rust-package
[WIP] buildRustPackage: enable strictDeps
2020-03-29 14:07:07 +01:00
Guanpeng Xu
d2702c915f mathematica: 12.0.0 -> 12.1.0 2020-03-29 14:38:33 +02:00
Jörg Thalheim
e841dce44a
rink: fix strict deps build 2020-03-29 12:37:25 +01:00
Constantine Glen Evans
59fbc7acba gwyddion: 2.48 -> 2.55 (and add options)
Gwyddion has a large number of optional dependencies. In this update,
those dependencies have been added with options set mostly to true,
and an option (default false) for working Python 2.7 support in the
program and in Python has been added. I have also added myself as a
maintainer as no maintainer is currently set.
2020-03-27 10:56:00 -07:00
Ryan Mulligan
c669d2991b
Merge pull request #83464 from r-ryantm/auto-update/last
last: 1047 -> 1060
2020-03-27 07:34:18 -07:00
R. RyanTM
bd3fbef804 last: 1047 -> 1060 2020-03-27 04:12:41 +00:00
Ryan Mulligan
8c5f9d0200
Merge pull request #83390 from r-ryantm/auto-update/seaview
seaview: 5.0 -> 5.0.2
2020-03-26 03:10:56 -07:00
R. RyanTM
4a3ea14b5b seaview: 5.0 -> 5.0.2 2020-03-26 00:25:29 +00:00
Austin Seipp
517fd073fc
xcircuit: 3.9.73 -> 3.10.12, maintain
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-03-25 17:46:15 -05:00
Austin Seipp
765b2fd866
mcy: 2020.03.16 -> 2020.03.21
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-03-25 06:46:01 -05:00
Austin Seipp
4808bef486
symbiyosys: 2020.02.11 -> 2020.03.24
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-03-25 06:46:01 -05:00
Vincent Laporte
618bca7054 alt-ergo: 2.3.0 → 2.3.1 2020-03-24 20:43:06 -04:00
Mario Rodas
b2df6d541d
lean: 3.7.0 -> 3.7.2 2020-03-22 04:20:00 -05:00
Mario Rodas
baeb670ce2
Merge pull request #82610 from r-ryantm/auto-update/eagle
eagle: 9.5.2 -> 9.6.0
2020-03-20 06:21:30 -05:00
Vincent Laporte
8dddd8a07f ocamlPackages.camlp5: 7.10 → 7.11 2020-03-19 18:04:14 -07:00
Claudio Bley
39767f8ae5
foldingathome: Make FAHControl be able to start the FAHViewer (#82925)
The command to run when clicking the button is configurable, but by default it
tries to run `FAHViewer`.
2020-03-19 13:05:54 +00:00
Austin Seipp
2ef42e07fd
mcy: 2020.02.05 -> 2020.03.16
Now with working web UI dashboard -- but no working GUI (yet!)

Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-03-17 17:19:40 -05:00
Austin Seipp
5cd4fd5bc5
symbiyosys: 2020.02.08 -> 2020.02.11
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-03-17 17:19:40 -05:00
Austin Seipp
9b43cf3a00
yosys: 2020.02.25 -> 2020.03.16
- Bump `abc-verifier` (2020.03.05)
  - Install `yosys-abc` symlink for tool compatbility
  - Various `yosys` expression cleanups

Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-03-17 17:19:37 -05:00
Dmitry Kalinkin
ebe5f10794
kicad: don't build versions with 3d on Hydra
The hydraPlatforms have to be set on the kicad package itself, that can be
checked using:

  echo ":p { inherit kicad kicad-small kicad-unstable; }" | nix repl ./pkgs/top-level/release.nix

This commit disables build of all kicad variants that require downloading
packages3d, which currently fail on hydra with the "Output limit exceeded"
status. This leaves Hydra with only building the kicad-small, which will allow
us to cache the build of kicad-base as well as all libraries except of
packages3d.
2020-03-16 19:45:04 -04:00
Dmitry Kalinkin
68db99ad97 snakemake: 5.9.1 -> 5.10.0 2020-03-14 15:58:24 -07:00
R. RyanTM
bafbfc5a06 eagle: 9.5.2 -> 9.6.0 2020-03-14 20:19:26 +00:00
zimbatm
001be890f7 folding@home: 6.02 -> 7.5.1
The v7 series is very different.

This commit introduces the 3 packages: fahclient, fahcontrol and
fahviewer. It also rebuilds the NixOS module to map better with the new
client.
2020-03-14 13:01:26 -07:00
Frederik Rietdijk
5175c35a99
Merge pull request #81611 from r-ryantm/auto-update/R
R: 3.6.2 -> 3.6.3
2020-03-14 14:29:05 +01:00
Josef Kemetmüller
3a8d05747b qgroundcontrol: Fix build
This silences some warnings to not run into "Log limit exceeded" on
hydra.
2020-03-14 03:18:39 +00:00
Mario Rodas
c935567de6 lean: 3.6.1 -> 3.7.0 2020-03-14 01:32:58 +00:00
wucke13
c24b9a57c4 getdp: 3.0.4 -> 3.3.0 2020-03-13 04:10:20 +00:00
R. RyanTM
a58d091d8d verilator: 4.028 -> 4.030 2020-03-12 20:57:34 -05:00
Maximilian Bosch
76821e6f43
geogebra: 5-0-573-0 -> 5-0-574-0 2020-03-12 18:12:57 +01:00
Timo Kaufmann
ba589e24c9 sage: patch for pari 2.11.3 2020-03-12 12:24:41 +01:00
Timo Kaufmann
c4ab541443 pari: backport bug fix
https://trac.sagemath.org/ticket/29313#comment:4
2020-03-12 12:24:35 +01:00
xaverdh
5ac085c3cc
wxmaxima: 18.02.0 -> 20.02.4 (#82323)
The commit description is 18.02.0 -> 20.02.4, because in the last version bump (1c6a193b3e), the version string was changed, but the hash was not.

Co-authored-by: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
2020-03-11 12:07:53 -04:00
Timo Kaufmann
1a6b1fb32a symmetrica: add timokau to maintainers 2020-03-10 18:10:28 +01:00
Timo Kaufmann
0c875c28c6 symmetrica: 2.0 -> 3.0.1
This switches to the sagemath fork, since the original upstream is no
longer maintained and sagemath has effectively maintained symmetrica
through patches for a while now. The update fixes one bug in particular
that has caused failures in the sagemath test suite:

https://github.com/NixOS/nixpkgs/issues/81449
https://trac.sagemath.org/ticket/15312
https://trac.sagemath.org/ticket/29061

Regarding the licensing change:

7cf91b3800
2020-03-10 18:10:25 +01:00
Timo Kaufmann
e05e219b31
Merge pull request #82240 from timokau/sage-docutils-0.15-fix
sage: fix test suite with docutils 0.15
2020-03-10 15:25:22 +00:00
Timo Kaufmann
7133577405 sage: fix test suite with docutils 0.15
The better way to fix this would be to backport the upstream sphinx
patch:

faedcc48cc

Unfortunately it doesn't apply cleanly and isn't worth the effort
of backporting. Let's hope we can switch to python3 sage and the recent
sphinx version that comes with it before this becomes a problem.
2020-03-10 13:15:41 +01:00
Timo Kaufmann
63ed2bf3c3
Merge pull request #81950 from r-ryantm/auto-update/pari
pari: 2.11.2 -> 2.11.3
2020-03-09 17:31:14 +00:00
Michael Raskin
bbab73266d
Merge pull request #80719 from mucaho/feature/clingcon_init
clingcon: init at 3.3.0
2020-03-09 07:42:38 +00:00
mucaho
202c2a8eff clingcon: init at 3.3.0 2020-03-08 19:21:55 +01:00
Maximilian Bosch
84f862ed91
Merge pull request #81796 from JohnAZoidberg/satallax-gcc9
satallax: Fix build with GCC9
2020-03-08 16:12:40 +01:00
Gabriel Ebner
d7a68e9bce
Merge pull request #82028 from r-ryantm/auto-update/qalculate-gtk
qalculate-gtk: 3.7.0 -> 3.8.0
2020-03-08 13:31:00 +01:00
Frederik Rietdijk
0eb0ddc4db Merge staging-next into master 2020-03-08 08:11:01 +01:00
R. RyanTM
e6f5bb8dc4 qalculate-gtk: 3.7.0 -> 3.8.0 2020-03-08 00:14:22 +00:00
Vincent Laporte
dcfccdfc33
acgtk: 1.5.0 → 1.5.1 (#81539)
Co-authored-by: Jon <jonringer@users.noreply.github.com>
2020-03-07 09:56:18 +01:00
R. RyanTM
6528554396 pari: 2.11.2 -> 2.11.3 2020-03-07 02:43:40 +00:00
Gabriel Ebner
8428f5bb4a elan: v0.8.0 tag was force-pushed by upstream 2020-03-06 15:35:37 +01:00
Gabriel Ebner
70e5428d66 elan: 0.7.5 -> 0.8.0 2020-03-06 14:28:36 +01:00
Joachim Breitner
2d2a5a9b63
js_of_ocaml: 3.4.0 -> 3.5.2 (#75766)
drive-by contributions, as I was playing around with this (it has better
support for the `num` library, it seems.)

js_of_ocaml: 3.4.0 -> 3.5.2
ocamlPackages.js_of_ocaml-ppx_deriving_json: use ppxlib-0.12.0
ocamlPackages.eliom: 6.8.0 → 6.10.1
ocamlPackages.ocsigen-toolkit: 2.2.0 → 2.5.0
ocamlPackages.ocsigen-start: 2.7.0 → 2.16.1

Co-authored-by: Vincent Laporte <Vincent.Laporte@gmail.com>
2020-03-06 07:42:04 +01:00
Frederik Rietdijk
188c3a4d03 Merge staging-next into staging 2020-03-06 07:09:30 +01:00
Mario Rodas
7597bdd59b
Merge pull request #81783 from r-ryantm/auto-update/gmsh
gmsh: 4.5.2 -> 4.5.4
2020-03-05 08:31:38 -05:00
Mario Rodas
1196a5c7a7
Merge pull request #81722 from r-ryantm/auto-update/workcraft
workcraft: 3.2.5 -> 3.2.6
2020-03-05 07:42:25 -05:00
Daniel Schaefer
bc56175034 satallax: Fix build with GCC9 2020-03-05 05:16:49 +01:00
R. RyanTM
9974067129 gmsh: 4.5.2 -> 4.5.4 2020-03-05 00:20:08 +00:00
R. RyanTM
adcdd7b0a7 gromacs: 2020 -> 2020.1 2020-03-04 23:10:39 +00:00
Jan Tojnar
1a44e325d2
Merge branch 'staging-next' into staging 2020-03-04 21:24:05 +01:00
R. RyanTM
86e6080daf workcraft: 3.2.5 -> 3.2.6 2020-03-04 13:41:09 +00:00
Mario Rodas
5760e001ca
Merge pull request #81706 from r-ryantm/auto-update/picard-tools
picard-tools: 2.21.8 -> 2.22.0
2020-03-04 07:26:05 -05:00
R. RyanTM
343ec80712 picard-tools: 2.21.8 -> 2.22.0 2020-03-04 09:58:40 +00:00
Gabriel Ebner
0d470dc5ea
Merge pull request #81692 from r-ryantm/auto-update/lean
lean: 3.6.0 -> 3.6.1
2020-03-04 10:32:38 +01:00
R. RyanTM
5b833c08ef lean: 3.6.0 -> 3.6.1 2020-03-04 06:26:01 +00:00
Aiken Cairncross
3db82f6fc3 python3Packages.monosat: Fix hash
PR #81562 inadvertently broke these builds
2020-03-03 11:02:23 -08:00
markuskowa
dbb9fab27f
Merge pull request #81604 from markuskowa/upd-octopus
octopus: 9.1 -> 9.2
2020-03-03 12:45:16 +01:00
R. RyanTM
faa5c3bde3 R: 3.6.2 -> 3.6.3 2020-03-03 11:34:22 +00:00
markuskowa
4822d61252
Merge pull request #80977 from r-ryantm/auto-update/quantum-espresso
quantum-espresso: 6.4.1 -> 6.5
2020-03-03 11:09:30 +01:00
Markus Kowalewski
eebd6fe75a
octopus: 9.1 -> 9.2 2020-03-03 10:54:23 +01:00
Aiken Cairncross
2148a154c6 python3Packages.monosat: Fix Python 3.8 build 2020-03-03 07:40:57 +01:00
Brenton Horne
b07eb54048 marvin: 20.4.0 -> 20.6.0 2020-03-02 21:50:25 +01:00
Jan Tojnar
f27031f48f
Merge pull request #81063 from NixOS/netpbm
netpbm: 10.82.01 → 10.89.1
2020-03-02 19:26:25 +01:00
scalavision
dbb4826457 truvari:1.3.2->1.3.4 2020-03-02 09:15:58 +01:00
Jan Tojnar
9555834399
netpbm: split into multiple outputs 2020-03-01 15:13:03 +01:00
Frederik Rietdijk
21b808cd76 Merge staging-next into staging 2020-02-29 15:29:45 +01:00
Benjamin Hipple
ad30a30488 rustPlatform.fetchCargo: handle custom Cargo.lock patchfiles with validation
Previously, we would asssert that the lockfiles are consistent during the
unpackPhase, but if the pkg has a patch for the lockfile itself then we must
wait until the patchPhase is complete to check.

This also removes an implicity dependency on the src attribute coming from
`fetchzip` / `fetchFromGitHub`, which happens to name the source directory
"source". Now we glob for it, so different fetchers will work consistently.
2020-02-28 18:54:23 -08:00
Matthieu Coudron
05b6836816 torchPackages, torch-repl: remove
See https://github.com/NixOS/nixpkgs/issues/71888
and https://github.com/NixOS/nixpkgs/issues/56398

To sump up, development has moved on to other technologies than lua:
https://github.com/torch/torch7#development-status
and the current packages are broken anyway.
2020-02-28 20:56:42 +01:00
Austin Seipp
7e66ce29bf
mcy: init at 2020.02.05
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-02-27 21:52:15 -06:00
Austin Seipp
3d8efecda1
symbiyosys: fix calls to external programs
48085826f broke symbiyosys when it needed to call `yosys-abc`: when
`ABCEXTERNAL` is set in the Makefile, then `yosys-abc` is not built.

But in general `sby` was just calling programs out of the ambient
environment. Fix that for most programs it can invoke: it now has a
direct dependency on boolector, aiger, abc, yosys, etc.

This also does some other minor clean up.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-02-27 21:52:15 -06:00
Mario Rodas
79f057e2eb
lean: 3.5.1 -> 3.6.0 2020-02-26 18:00:00 -05:00
Dmitry Kalinkin
b9ee6cd85c
Merge pull request #80640 from smaret/gildas-20200201a
gildas: 20200101_a -> 20200201_a
2020-02-25 10:26:18 -05:00
R. RyanTM
56d58ecb24 quantum-espresso: 6.4.1 -> 6.5 2020-02-24 19:40:14 +00:00
R. RyanTM
4080e7976e gtkwave: 3.3.103 -> 3.3.104 2020-02-24 11:43:54 -06:00
Linus Heckemann
0cc83f884a
Merge pull request #80292 from bcdarwin/mrtrix
mrtrix: init at 3.0_RC3_latest
2020-02-24 13:52:38 +01:00
Timo Kaufmann
f4dbf4402b
Merge pull request #80759 from Thra11/fix-r
Fix R
2020-02-23 23:48:21 +00:00