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7895 Commits

Author SHA1 Message Date
Robert Scott
3feefc9d32 root5: disable fortify3 hardening flags 2023-07-09 12:45:43 +01:00
Mauricio Collares
189a069329
Merge pull request #242419 from r-ryantm/auto-update/polymake 
polymake: 4.9 -> 4.10
 2023-07-09 11:54:17 +01:00
Weijia Wang
6d506a9d51
Merge pull request #242302 from r-ryantm/auto-update/nest-mpi 
nest-mpi: 3.4 -> 3.5
 2023-07-09 12:21:22 +03:00
R. Ryantm
ca9e7a2416 polymake: 4.9 -> 4.10 2023-07-09 06:18:12 +00:00
R. Ryantm
ead7b7800d nest-mpi: 3.4 -> 3.5 2023-07-08 16:03:30 +00:00
R. Ryantm
47d5bee543 veryfasttree: 4.0 -> 4.0.1 2023-07-08 07:27:05 +00:00
Ilan Joselevich
412e47d656
Merge pull request #241919 from dev-null-undefined/master 
mathematica: 13.2.1 -> 13.3.0
 2023-07-08 00:44:26 +03:00
Markus Kowalewski markus.kowalewski@fysik.su.se
3cbc4483f3 octopus: 12.2 -> 13.0 2023-07-06 15:25:28 +02:00
dev-null-undefined
76177da5c0
mathematica: 13.2.1 -> 13.3.0 2023-07-06 14:20:10 +02:00
Evils
2f4d7504f5 kicad: 7.0.5 -> 7.0.6 2023-07-06 07:18:29 +02:00
figsoda
8e1aab5d34 egglog: unstable-2023-06-11 -> unstable-2023-06-26 
Diff: c7ef8b000c...187441ad0d
 2023-07-04 11:57:03 -04:00
R. Ryantm
fac18fdb2c autodock-vina: 1.2.3 -> 1.2.5 2023-07-04 13:13:22 +00:00
Doron Behar
2bc847c8f4
Merge pull request #241325 from alyaeanyx/qalculate-4.7.0 
{libqalculate, qalculate-gtk, qalculate-qt}: 4.6.1 -> 4.7.0
 2023-07-04 11:19:48 +00:00
Nick Cao
b44297facb
Merge pull request #241272 from kilianar/stellarium-23.2 
stellarium: 23.1 -> 23.2
 2023-07-04 10:34:33 +08:00
alyaeanyx
2ae8e33832 {libqalculate, qalculate-gtk, qalculate-qt}: 4.6.1 -> 4.7.0 2023-07-03 20:07:10 +02:00
Weijia Wang
1e0d363214
Merge pull request #241136 from r-ryantm/auto-update/veryfasttree 
veryfasttree: 3.1.1 -> 4.0
 2023-07-03 17:17:51 +03:00
kilianar
24016b9633 stellarium: 23.1 -> 23.2 
https://github.com/Stellarium/stellarium/releases/tag/v23.2
 2023-07-03 14:04:41 +02:00
Weijia Wang
82d4f6b43d veryfasttree: fix build on darwin 2023-07-03 12:29:44 +03:00
Weijia Wang
d2eeccba40
Merge pull request #241086 from r-ryantm/auto-update/simgrid 
simgrid: 3.32 -> 3.34
 2023-07-03 10:38:49 +03:00
Nick Cao
8feaa9fe93
Merge pull request #241120 from jiegec/cbmc 
cbmc: 5.76.1 -> 5.86.0
 2023-07-03 13:58:03 +08:00
figsoda
5522188fc8
Merge pull request #241192 from tjni/snakemake 
snakemake: fix broken source hash
 2023-07-02 21:02:26 -04:00
Theodore Ni
1af33d4653
snakemake: fix broken source hash 2023-07-02 16:50:09 -07:00
Nick Cao
ab163c16ee
Merge pull request #241037 from NickCao/gprojector 
gprojector: 3.0.6 -> 3.1.0
 2023-07-03 06:20:55 +08:00
Martin Weinelt
5a193fb4dd
Merge pull request #232469 from natsukium/autodock-vina/init 
autodock-vina: init at 1.2.3
 2023-07-02 23:45:13 +02:00
Martin Weinelt
bb40b8c205
Merge pull request #235322 from natsukium/dssp/update 
dssp: 4.2.2.1 -> 4.3.1; libcifpp: 5.0.8 -> 5.1.0.1; libmcfp: 1.2.3 -> 1.2.4
 2023-07-02 23:12:49 +02:00
figsoda
50acc2d57a pkgs/applications: replace "${version}" with version 2023-07-02 14:39:50 -04:00
R. Ryantm
cb16c50571 veryfasttree: 3.1.1 -> 4.0 2023-07-02 15:55:36 +00:00
Jiajie Chen
2db283819e cbmc: 5.76.1 -> 5.86.0 2023-07-02 22:46:06 +08:00
R. Ryantm
1539e263f8 simgrid: 3.32 -> 3.34 2023-07-02 11:06:07 +00:00
Nick Cao
1693695975
gprojector: 3.0.6 -> 3.1.0 2023-07-02 13:06:15 +08:00
Doron Behar
48c25dcaf2 spdlog: reformat expression arguments, and comment about fmt_9 2023-07-01 16:59:49 +03:00
natsukium
7b49fced0f
dssp: fix format 
- add changelog to meta
- use finalAttrs
 2023-07-01 16:40:29 +09:00
natsukium
fba5a4d702
dssp: 4.2.2.1 -> 4.3.1 
Diff: https://github.com/PDB-REDO/dssp/compare/v4.2.2.1...v4.3.1
 2023-07-01 16:36:36 +09:00
Michael Gregson
9269d5823d tlaplus18: init at 1.8.0 
This is a pre-release of version 1.8 of TLA+. It adds, among other
things, a TLA+ REPL.

Release Notes: https://github.com/tlaplus/tlaplus/releases/tag/v1.8.0
 2023-06-30 16:09:41 -07:00
Théo Zimmermann
29cf8484ab
Merge pull request #240656 from vbgl/coq-8.17.1 
coq: 8.17.0 → 8.17.1
 2023-06-30 14:26:08 +02:00
Weijia Wang
3b743dd6b6
Merge pull request #240479 from r-ryantm/auto-update/gerbv 
gerbv: 2.9.7 -> 2.9.8
 2023-06-30 10:29:54 +03:00
Vincent Laporte
002ffb885a
coq: 8.17.0 → 8.17.1 2023-06-30 06:48:15 +02:00
R. Ryantm
c7231acb83 gerbv: 2.9.7 -> 2.9.8 2023-06-29 06:41:33 +00:00
Justin Bedő
296758401d
Merge pull request #239891 from NixOS/r-updates 
R updates
 2023-06-29 13:14:20 +10:00
Justin Bedő
2687680f22
Merge pull request #240318 from r-ryantm/auto-update/mosdepth 
mosdepth: 0.3.3 -> 0.3.4
 2023-06-29 09:52:34 +10:00
nviets
4bb4d449a7
snakemake: 7.25.3 -> 7.29.0 (#240263) 
Co-authored-by: nviets <nathan.viets@gmail.com>
 2023-06-28 17:09:10 +02:00
OTABI Tomoya
125bb92705
streamlit: 1.21.0 -> 1.24.0 (#240248) 
Diff: https://github.com/streamlit/streamlit/compare/1.21.0...1.24.0

Changelog: https://github.com/streamlit/streamlit/releases/tag/1.24.0
 2023-06-28 17:08:47 +02:00
Mario Rodas
e6a970aaba
Merge pull request #238994 from kilianar/geogebra 
geogebra: 5-0-745-0 -> 5-0-783-0, geogebra6: 6-0-745-0 -> 6-0-783-0
 2023-06-28 06:55:22 -05:00
R. Ryantm
abfcd95c63 mosdepth: 0.3.3 -> 0.3.4 2023-06-28 10:52:42 +00:00
R. Ryantm
75b8e7eb4b cryptominisat: 5.11.4 -> 5.11.11 2023-06-28 02:05:20 +00:00
kilianar
46f3360e1a geogebra6: 6-0-745-0 -> 6-0-785-0 2023-06-28 00:08:19 +02:00
kilianar
48a30529f7 geogebra: 5-0-745-0 -> 5-0-785-0 2023-06-28 00:08:19 +02:00
Sandro
6c112fb5de
Merge pull request #232600 from evils/kicad-unstable 2023-06-27 13:33:54 +02:00
Janik
77e5ce731b
Merge pull request #238964 from McSinyx/klee-3 2023-06-27 09:38:09 +02:00
Evils
ad19566aca kicad-unstable: 2023-04-14 -> 2023-06-24 
new qa_cli test needs pytest-image-diff
it also accesses $HOME, so setting that as well
and it checks for a valid commit
 which is exposed to the end-user via kicad-cli version --format=commit
 so i'm setting the placeholder to the actual commit used
  mostly to avoid doing a leaveDotGit and rewriting update.sh
 2023-06-27 08:27:47 +02:00
github-actions[bot]
4e9dcbbbc6
Merge master into staging-next 2023-06-26 18:01:29 +00:00
Janik
a2f36b2963
Merge pull request #231149 from mgregson/tlaplus-remove-unnecessary-jdk-dependency 2023-06-26 18:15:28 +02:00
github-actions[bot]
f04cfae48a
Merge master into staging-next 2023-06-26 12:01:27 +00:00
Mario Rodas
e0e4c97cd1
Merge pull request #239623 from marsam/update-z3 
z3: 4.11.0 -> 4.11.2, 4.12.1 -> 4.12.2
 2023-06-26 05:16:37 -05:00
Vladimír Čunát
24711148d4
openmvg: fixup build 
The build broke probably after cmake upgrade in b8ac5b6cfb,
but either way - this forcing of old C++ standard seemed bad.
https://hydra.nixos.org/build/225241222/nixlog/2/tail
 2023-06-26 11:28:12 +02:00
Justin Bedo
bd8f4a24e1
R: 4.3.0 -> 4.3.1 2023-06-26 16:47:23 +10:00
Weijia Wang
826bdb7214
Merge pull request #239691 from r-ryantm/auto-update/diamond 
diamond: 2.1.7 -> 2.1.8
 2023-06-26 07:46:03 +02:00
Weijia Wang
ca4181830d
Merge pull request #239646 from r-ryantm/auto-update/horizon-eda 
horizon-eda: 2.4.0 -> 2.5.0
 2023-06-26 07:41:37 +02:00
Weijia Wang
2b6acb1ae6
Merge pull request #239479 from r-ryantm/auto-update/qucs-s 
qucs-s: 1.0.2 -> 1.1.0
 2023-06-26 07:25:09 +02:00
Mario Rodas
27343d6e6b
Merge pull request #239795 from r-ryantm/auto-update/elan 
elan: 1.4.5 -> 1.4.6
 2023-06-25 14:10:25 -05:00
R. Ryantm
aa93209605 elan: 1.4.5 -> 1.4.6 2023-06-25 17:27:10 +00:00
R. Ryantm
fa6b5a3cb3 last: 1453 -> 1456 2023-06-25 11:01:07 -03:00
R. Ryantm
754d578555 diamond: 2.1.7 -> 2.1.8 2023-06-25 04:35:30 +00:00
R. Ryantm
0c7cacbac4 horizon-eda: 2.4.0 -> 2.5.0 2023-06-24 21:56:23 +00:00
Felix Buehler
f3719756b5 treewide: use optionalString instead of 'then ""' 2023-06-24 20:19:19 +02:00
Mario Rodas
b2aee9c18e
Merge pull request #230298 from jleightcap/jl/z3-4.12 
z3: 4.12.1
 2023-06-24 10:53:02 -05:00
Mario Rodas
cce7280539 z3_4_12: 4.12.1 -> 4.12.2 
https://github.com/Z3Prover/z3/releases/tag/z3-4.12.2
 2023-06-24 04:20:00 +00:00
Mario Rodas
f87301f5f1 z3_4_11: 4.11.0 -> 4.11.2 
https://github.com/Z3Prover/z3/releases/tag/z3-4.11.2
 2023-06-24 04:20:00 +00:00
Mario Rodas
2c0a8e5050 z3: add changelog to meta 2023-06-24 04:20:00 +00:00
R. Ryantm
296b322b40 qucs-s: 1.0.2 -> 1.1.0 2023-06-23 22:41:56 +00:00
Nick Cao
7d73228de8
eigenmath: unstable-2023-05-12 -> unstable-2023-06-16 
Diff: a6de473ad8...800adc5c0b
 2023-06-22 16:40:56 +08:00
Doron Behar
636000a5bb
Merge pull request #238771 from doronbehar/pkg/lammps-extras 
lammps-mpi: Use a generic extraBuildInputs instead of withMpi
 2023-06-22 06:50:03 +00:00
Doron Behar
4a64b8d9f3 lammps-mpi: Use a generic extraBuildInputs instead of withMpi 
Add support for `extraCmakeFlags` as well and add `pkg-config` to
`nativeBuildInputs`.
 2023-06-21 23:03:57 +03:00
Nguyễn Gia Phong
558af1d8a5
klee: 2.3 -> 3.0 2023-06-21 18:16:44 +09:00
R. Ryantm
6884e85326 verilator: 5.010 -> 5.012 2023-06-21 03:43:32 +00:00
Weijia Wang
dca415554f treewide: replace mavenfod with buildMavenPackage 2023-06-20 19:59:30 +03:00
Weijia Wang
40001fa439 treewide: remove mavenfod overrides 2023-06-20 19:54:51 +03:00
Weijia Wang
9ce0974026 gephi: convert to mavenfod 2023-06-20 15:04:49 +03:00
Tillerino
13dd515a92 maven: adjust hashes of pull-maven-dependencies derivations 
Since the newer Maven pulls different versions of its own dependencies,
the hashes of these derivations all changed.
 2023-06-20 13:15:27 +02:00
Weijia Wang
bac33585a7
Merge pull request #238709 from wegank/digital-mavenfod 
digital: convert to mavenfod
 2023-06-20 11:59:15 +03:00
Weijia Wang
06f73278ea digital: convert to mavenfod 2023-06-20 09:53:15 +03:00
Philipp Middendorf
8cff0900bc
crystfel: fix x86_64 hash (#238606) 2023-06-20 08:32:03 +02:00
Markus Kowalewski
a9d8ac0b1e
openmolcas: fix hash 2023-06-19 15:11:32 +02:00
Weijia Wang
799c5a8032
Merge pull request #238330 from figsoda/egglog 
egglog: unstable-2023-05-22 -> unstable-2023-06-11
 2023-06-18 02:07:56 +03:00
Weijia Wang
0de9ad3cc4
Merge pull request #238321 from markuskowa/upd-openmolcas 
openmolcas: 23.02 -> 23.06
 2023-06-18 02:03:59 +03:00
figsoda
70f33f2777 egglog: unstable-2023-05-22 -> unstable-2023-06-11 
Diff: 5242b50051...c7ef8b000c
 2023-06-17 17:33:00 -04:00
Markus Kowalewski
cb5504b21c
openmolcas: 23.02 -> 23.06 2023-06-17 22:38:08 +02:00
Mario Rodas
2bd4a56ee1
Merge pull request #237950 from bcdarwin/bppsuite-fix-homepage 
bppsuite: fix homepage
 2023-06-16 18:28:27 -05:00
figsoda
eaebbdf59a
Merge pull request #238092 from NickCao/calcmysky 
calcmysky: 0.3.0 -> 0.3.1
 2023-06-16 12:28:14 -04:00
Weijia Wang
e44c81a3b8
Merge pull request #229525 from lopsided98/mavproxy-update 
mavproxy, python3Packages.pymavlink: update
 2023-06-16 16:12:53 +03:00
Nick Cao
f9eed769ca
calcmysky: add stellarium to tests 2023-06-16 21:12:50 +08:00
Nick Cao
c196ad4df9
calcmysky: 0.3.0 -> 0.3.1 
Diff: https://github.com/10110111/CalcMySky/compare/refs/tags/v0.3.0...v0.3.1
 2023-06-16 21:11:04 +08:00
Pol Dellaiera
610f62011e
Merge pull request #237742 from natsukium/kalign/init 
kalign: init at 3.3.5
 2023-06-16 08:20:55 +02:00
Ben Wolsieffer
99002aba8e mavproxy: 1.8.60 -> 1.8.62 2023-06-15 17:36:54 -04:00
Ben Darwin
9120f78e06 bppsuite: fix homepage 
Old homepage is down, so point to GitHub instead.
 2023-06-15 12:18:11 -04:00
Weijia Wang
169cb59498 calc: replace util-linux with unixtools.col 2023-06-15 14:25:40 +03:00
Théo Zimmermann
2bdeec6f84 coq: use dune_3 
This is needed to build Coq dev and is compatible with all current releases of Coq that require Dune.
 2023-06-14 14:33:36 +02:00
natsukium
7b36afffd6
kalign: init at 3.3.5 2023-06-14 21:05:58 +09:00
Weijia Wang
3f3ca021b7
Merge pull request #237633 from wegank/gplates-python39 
gplates: drop python39
 2023-06-14 00:59:31 +03:00
natsukium
3d1b9f0819 macs2: rename from MACS2 2023-06-13 21:47:47 +00:00