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c269b51c38
Commit Graph

3513 Commits

Author SHA1 Message Date
Timo Kaufmann
c269b51c38 gap: move to new source URL 
GAP downloads moved to a new subdomain. The old one still redirects, but
the new one is the "source of truth" so we should switch to that.
 2020-05-28 15:53:56 +02:00
Timo Kaufmann
a4c76b970c gap: use the check target for install checks 
As suggested by Max Horn.

This exists since gap 4.10 and will only run the install checks once
while also exiting with an appropriate exit code. This new check has
uncovered some test failures, which are harmless and actually disabled
in a future gap release. The error-detection code for the previous test
target was probably broken.
 2020-05-28 15:50:46 +02:00
R. RyanTM
f4e01832ed marvin: 20.10.0 -> 20.12.0 2020-05-27 12:11:37 -07:00
R. RyanTM
5841bc46f8 proverif: 2.00 -> 2.01 2020-05-27 12:07:52 -07:00
Jörg Thalheim
660854a266
Merge pull request #88916 from zowoq/patches 2020-05-27 06:54:01 +01:00
Benjamin Hipple
f04a5af0cc
Merge pull request #82180 from bcdarwin/bppcore 
bppsuite: init at 2.4.1
 2020-05-26 21:07:25 -04:00
Lassulus
ed25a12070
Merge pull request #70487 from esclear/xflr5 
xflr5: init at 6.47
 2020-05-27 00:00:05 +02:00
zowoq
cb4cc7a480 sad: use patch file extension 2020-05-26 14:50:50 +10:00
Benjamin Hipple
d3082a31cd
Merge pull request #87544 from bcdarwin/vtk-8 
vtk: 7.1.1 -> 8.2.0
 2020-05-26 00:24:28 -04:00
Ben Darwin
45cd7beeb2 bppsuite: init at 2.4.1 2020-05-25 21:13:02 -04:00
Ryan Mulligan
85898181b0
Merge pull request #88844 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.22.7 -> 2.22.8
 2020-05-25 06:09:11 -07:00
Mario Rodas
bc4469005e
Merge pull request #88824 from r-ryantm/auto-update/lean 
lean: 3.13.1 -> 3.14.0
 2020-05-24 22:49:35 -05:00
R. RyanTM
a60a040236 picard-tools: 2.22.7 -> 2.22.8 2020-05-25 01:25:17 +00:00
R. RyanTM
7573e99a60 lean: 3.13.1 -> 3.14.0 2020-05-24 22:22:11 +00:00
R. RyanTM
c1b7c7e87c
snakemake: 5.16.0 -> 5.17.0 (#88766) 2020-05-24 13:32:14 -04:00
Dmitry Kalinkin
9eb3f39bca
Merge pull request #88713 from veprbl/pr/sherpa_2_2_10 
sherpa: 2.2.9 -> 2.2.10
 2020-05-23 21:56:57 -04:00
Dmitry Kalinkin
e6282f9f6c
sherpa: 2.2.9 -> 2.2.10 2020-05-23 16:22:08 -04:00
Ryan Mulligan
5505be7840
Merge pull request #88568 from r-ryantm/auto-update/last 
last: 1060 -> 1061
 2020-05-23 11:42:47 -07:00
Frederik Rietdijk
bc3c3b4a59 pythonPackages.kicad: bindings to kicad 
Add the Python bindings for kicad.

Following now functions

    $ nix run "(import ./. {}).python3.withPackages(ps: with ps; [ kicad  ])" -c python3 -c "import pcbnew"

Have not tested this any further.
 2020-05-23 15:44:14 +02:00
Mario Rodas
d30b7592c4
Merge pull request #88363 from r-ryantm/auto-update/clp 
clp: 1.17.5 -> 1.17.6
 2020-05-23 00:31:57 -05:00
R. RyanTM
25841d95c5 last: 1060 -> 1061 2020-05-22 02:21:55 +00:00
zimbatm
28357868f8
Merge pull request #88482 from r-ryantm/auto-update/fahcontrol 
fahcontrol: 7.6.9 -> 7.6.13
 2020-05-21 12:12:37 +02:00
zimbatm
1f6fcc7025
Merge pull request #88493 from r-ryantm/auto-update/fahviewer 
fahviewer: 7.6.9 -> 7.6.13
 2020-05-21 12:12:01 +02:00
R. RyanTM
f52889cd38 fahviewer: 7.6.9 -> 7.6.13 2020-05-21 08:53:14 +00:00
Evils
d798396684 kicad-unstable: 2020-05-06 -> 2020-05-14 2020-05-21 10:49:18 +02:00
Evils
a791245d51 kicad: 5.1.5 -> 5.1.6 2020-05-21 10:49:18 +02:00
R. RyanTM
0cc843b538 fahcontrol: 7.6.9 -> 7.6.13 2020-05-21 06:24:27 +00:00
Vincent Laporte
48f0d8b3c8 coq_8_11: 8.11.1 → 8.11.2 2020-05-20 19:21:42 +02:00
Timo Kaufmann
b811d52b9c
Merge pull request #88428 from timokau/nauty-27r1 
nauty: 26r12 -> 27r1
 2020-05-20 13:22:15 +00:00
Timo Kaufmann
d0e171395a nauty: 26r12 -> 27r1 
Changes: http://pallini.di.uniroma1.it/changes24-27.txt
 2020-05-20 14:59:46 +02:00
Timo Kaufmann
a276c4485c nauty: add meta.changelog 2020-05-20 14:59:46 +02:00
Ryan Mulligan
aae8733f96
Merge pull request #88210 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.22.4 -> 2.22.7
 2020-05-20 05:08:01 -07:00
R. RyanTM
d1b7e3f8cc clp: 1.17.5 -> 1.17.6 2020-05-20 10:04:01 +00:00
R. RyanTM
3450729658 picard-tools: 2.22.4 -> 2.22.7 2020-05-19 21:56:38 +00:00
Timo Kaufmann
7447395f9d
Merge pull request #88177 from timokau/palp-2.11-hash-fixup 
palp: fix hash
 2020-05-19 18:43:59 +00:00
Timo Kaufmann
aae9af9632 palp: fix hash 
It looks like the upstream tarball was changed since I updated palp 3
days ago. Hopefully that won't happen again.
 2020-05-19 17:50:43 +02:00
Gabriel Ebner
ade0eba99d
Merge pull request #88131 from r-ryantm/auto-update/elan 2020-05-19 09:38:28 +02:00
Lancelot SIX
b7c5508bfc
Merge pull request #86910 from lsix/cytoscape-3.8.0 
cytoscape: 3.7.2 -> 3.8.0
 2020-05-19 08:32:48 +01:00
R. RyanTM
748e2fcf6c elan: 0.10.0 -> 0.10.2 2020-05-19 05:02:43 +00:00
Timo Kaufmann
91da9ed129
Merge pull request #87944 from timokau/palp-2.11 
palp: 2.1 -> 2.11
 2020-05-18 19:58:59 +00:00
Ryan Mulligan
fdf4439acc
Merge pull request #87494 from r-ryantm/auto-update/SPAdes 
SPAdes: 3.14.0 -> 3.14.1
 2020-05-18 08:06:19 -07:00
Timo Kaufmann
d65850e975 palp: 2.1 -> 2.11 
According to the homepage[1]:

> Small change in Mori.h for compatibility with gcc_10 (thanks to J.
  Puydt) [May 15, 2020].

Disabling the strictoverflow seems to be no longer necessary (I'm
relying on the check phase here).

[1] http://hep.itp.tuwien.ac.at/~kreuzer/CY/CYpalp.html
 2020-05-16 15:07:57 +02:00
Timo Kaufmann
51de320353 palp: add meta.changelog 2020-05-16 15:05:45 +02:00
Mario Rodas
b022ecbf5d
lean: 3.10.0 -> 3.13.1 2020-05-16 04:20:00 -05:00
Matt Huszagh
e8215cd634 colmap: update boost to 1.72 to fix build 2020-05-15 09:42:36 -07:00
R. RyanTM
d11e5f1a4e verilator: 4.032 -> 4.034 2020-05-12 22:27:21 -07:00
R. RyanTM
e07dfd38f1 wxmaxima: 20.02.4 -> 20.04.0 2020-05-12 22:12:53 -07:00
Ben Darwin
5e716bf469 vtk: 7.1.1 -> 8.2.0 
- also create vtk_7 as several packages don't build with 8.x:
  - itk5: vtkVersion.h header not found at compile time
  - ants: version in tree (2.2.0) is incompatible with 8.2
  - itk4: ants depends on both vtk and itk4, so use vtk_7
  - gdcm: vtk header issue
  - python3Packages.vtk: Python C API compilation error with Python 3.8

- upgrade vtkWithQt4 -> vtkWithQt5
 2020-05-11 17:54:29 -04:00
Jörg Thalheim
3a9543b778
Merge pull request #82634 from evils/kicad 2020-05-11 10:27:18 +01:00
R. RyanTM
ae4d9cb9a0 stacks: 2.52 -> 2.53 2020-05-10 09:37:29 -07:00