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7733 Commits

Author SHA1 Message Date
natsukium
5b62152599
kent: add runHooks 2023-04-20 16:06:08 +09:00
natsukium
1e68ff3ee9
kent: 404 -> 446 
https://github.com/ucscGenomeBrowser/kent/compare/v404_base...v446_base
 2023-04-20 16:05:44 +09:00
Weijia Wang
17148b8f7d
Merge pull request #226929 from cransom/pcb2gcode-darwin 
pcb2gcode: fix build on darwin
 2023-04-20 09:53:22 +03:00
Nick Cao
e6a95d9628
Merge pull request #227036 from natsukium/tandem-aligner/v0.1 
tandem-aligner: unstable-2022-09-17 -> 0.1
 2023-04-20 09:17:52 +08:00
Casey Ransom
3ed1e3b268 pcb2gcode: fix build on darwin 
This version bumps gerbv as well.
 2023-04-19 21:15:54 -04:00
Justin Bedo
718170ed41
subread: 2.0.4 -> 2.0.5 2023-04-20 10:25:20 +10:00
Robert Scott
d32a852d2a
Merge pull request #226329 from risicle/ris-streamlit-1.21.0 
streamlit: 1.18.1 -> 1.21.0
 2023-04-19 18:12:10 +01:00
Dmitry Kalinkin
cafa2f02fb
root: enable root7 (#226351) 2023-04-19 10:28:26 -04:00
natsukium
e201b1556f
tandem-aligner: add changelog to meta 2023-04-19 21:23:21 +09:00
natsukium
14d7a73714
tandem-aligner: unstable-2022-09-17 -> 0.1 
https://github.com/seryrzu/tandem_aligner/releases/tag/v0.1
 2023-04-19 21:22:18 +09:00
Weijia Wang
c2c0c070cf glsurf: update platforms 2023-04-19 12:01:16 +03:00
natsukium
a272606614
hh-suite: init at 3.3.0 2023-04-19 10:32:35 +09:00
Artturi
9a1f5d4248
Merge pull request #226889 from Artturin/fixlints2 2023-04-18 21:52:21 +03:00
Artturin
eac28f38d6 treewide: fix lints 
Arg to lib.optional is a list

build time tool in buildInputs

*Flags not a list

https://github.com/nix-community/nixpkgs-lint
 2023-04-18 20:20:56 +03:00
7c6f434c
0a187c56e3
Merge pull request #226628 from natsukium/jmol/update 
jmol: 16.1.3 -> 16.1.9
 2023-04-18 15:29:43 +00:00
Sandro
555daa9d33
Merge pull request #221957 from natsukium/dssp/update 
dssp: 4.0.5 -> 4.2.2.1
 2023-04-18 16:34:17 +02:00
Sandro
db3d1dbe79
Merge pull request #226042 from collares/ipywidgets805 
python3Packages.ipywidgets: 8.0.4 -> 8.0.6
 2023-04-18 16:25:27 +02:00
Doron Behar
0c57b3ac86
Merge pull request #226645 from alyaeanyx/qalculate-4.6.1 
libqalculate, qalculate-gtk, qalculate-qt: 4.6.0 -> 4.6.1
 2023-04-17 09:36:08 -07:00
Thomas Tuegel
ccf7156d8d
Merge pull request #217974 from pxrl/pxrl/z3 
z3: 4.8.15 -> 4.8.17
 2023-04-17 10:03:07 -05:00
alyaeanyx
834c6bf777 libqalculate, qalculate-gtk, qalculate-qt: 4.6.0 -> 4.6.1 2023-04-17 15:42:23 +02:00
Nick Cao
e94b6203c9
Merge pull request #226546 from returntoreality/kstars-update 
kstars: 3.6.3 -> 3.6.4
 2023-04-17 19:47:39 +08:00
natsukium
23e78ca2fc
jmol: 16.1.3 -> 16.1.9 2023-04-17 17:53:08 +09:00
R. Ryantm
c806a5c121 gtkwave: 3.3.114 -> 3.3.115 2023-04-17 03:29:10 +00:00
Weijia Wang
9e47fc8658
Merge pull request #226455 from wegank/nvc-bump 
nvc: 1.9.0 -> 1.9.1
 2023-04-16 19:01:18 +03:00
R. Ryantm
f30febf830 form: 4.3.0 -> 4.3.1 2023-04-16 11:18:22 -04:00
Weijia Wang
4825f97fce nvc: 1.9.0 -> 1.9.1 2023-04-16 15:11:11 +03:00
Atemu
445ef28548
Merge pull request #225748 from Atemu/buildFHSEnvBubblewrap-by-default 
buildFHSEnv: use bubblewrap by default
 2023-04-16 13:03:36 +02:00
Atemu
f63a12f296 tree-wide: buildFHSUserEnv -> buildFHSEnv 2023-04-16 10:15:13 +02:00
Bobby Rong
2abbfae038
Merge pull request #226353 from kindrowboat/fix-nasc 
nasc: fix compile failure
 2023-04-16 09:40:48 +08:00
Stef Dunlap
79c4e8aaa8 nasc: fix compile failure 
Fix inspired by AUR patch: https://aur.archlinux.org/packages/nasc#comment-879822
 2023-04-15 17:18:12 -04:00
Weijia Wang
ea734f4e9a
Merge pull request #224357 from wegank/sasview-fix 
sasview: fix build
 2023-04-15 20:35:49 +03:00
Evils
cce076bd24 kicad-unstable: 2023-03-29 -> 2023-04-14 
workaround for upstream issue 14346 no longer needed
 2023-04-15 12:32:23 +02:00
Evils
534f790a75 kicad: 7.0.1 -> 7.0.2 2023-04-15 12:32:23 +02:00
Robert Scott
a604287fbe streamlit: 1.18.1 -> 1.21.0 2023-04-15 11:23:01 +01:00
Nick Cao
25e21b34a9
Merge pull request #226208 from panicgh/dataexplorer 
dataexplorer: 3.7.4 -> 3.7.6
 2023-04-15 11:30:56 +08:00
Weijia Wang
b5eaa9ffd9 stellarium: update darwin patches 2023-04-15 03:10:34 +03:00
Nicolas Benes
1f8eeba04f dataexplorer: 3.7.4 -> 3.7.6 2023-04-15 00:47:26 +02:00
natsukium
62943901dd
dssp: 4.0.5 -> 4.2.2.1 
https://github.com/PDB-REDO/dssp/compare/v4.0.5...v4.2.2.1
 2023-04-14 11:35:48 +09:00
Mauricio Collares
058dc0f6df sage: replace ipywidgets workaround by update patches 2023-04-13 22:15:27 +02:00
7c6f434c
8f8acb2140
Merge pull request #225723 from r-ryantm/auto-update/opensmt 
opensmt: 2.4.3 -> 2.5.0
 2023-04-13 08:54:55 +00:00
Nick Cao
2833fc3981
Merge pull request #225841 from natsukium/mafft/update 
mafft: 7.515 -> 7.520
 2023-04-13 09:15:12 +08:00
Robert Scott
2107f7de60
Merge pull request #225865 from bzizou/samtools 
samtools: 1.13 -> 1.17
 2023-04-13 00:10:42 +01:00
Bruno Bzeznik
d69d242b7b Samtools: 1.13 -> 1.17 
Changelogs:
 - https://github.com/samtools/samtools/releases/tag/1.14
 - https://github.com/samtools/samtools/releases/tag/1.15
 - https://github.com/samtools/samtools/releases/tag/1.15.1
 - https://github.com/samtools/samtools/releases/tag/1.16
 - https://github.com/samtools/samtools/releases/tag/1.16.1
 - https://github.com/samtools/samtools/releases/tag/1.17
 2023-04-12 12:00:25 +02:00
Sandro
b0989ca61b
Merge pull request #222632 from panicgh/spdlog-upd 
tiledb: 2.3.3 -> 2.8.3, spdlog: 1.10.0 -> 1.11.0, spdlog_0: remove
 2023-04-12 10:57:23 +02:00
natsukium
f962206f94
mafft: 7.515 -> 7.520 
https://gitlab.com/sysimm/mafft/-/tags/v7.520
 2023-04-12 13:28:24 +09:00
Nick Cao
47f3cca66d
Merge pull request #225265 from NickCao/eigenmath 
eigenmath: unstable-2023-03-05 -> unstable-2023-04-07
 2023-04-12 11:45:15 +08:00
R. Ryantm
2ed32c48a5 primecount: 7.7 -> 7.8 2023-04-11 15:08:24 -03:00
R. Ryantm
84dbda044f opensmt: 2.4.3 -> 2.5.0 2023-04-11 10:26:10 +00:00
Sandro
23e55a367e
Merge pull request #223068 from MarcFontaine/master 2023-04-10 21:52:29 +02:00
Weijia Wang
282c22a4d2 nvc: 1.8.2 -> 1.9.0 2023-04-10 13:34:15 +03:00
Dmitry Kalinkin
df3bf8ff76
Merge pull request #218331 from xworld21/texlive-new-dependency-resolution 
texlive.combine: move dependencies to attribute tlDeps, resolve them …
 2023-04-09 23:59:45 -04:00
Sandro
08d2ac8dbc
Merge pull request #186127 from ShamrockLee/raspa2 2023-04-09 18:42:37 +02:00
Linus Karl
e7997ece6e kstars: 3.6.3 -> 3.6.4 
Changelog: 85dfd8fb6e/ChangeLog
 2023-04-08 22:03:04 +02:00
Nick Cao
027d18d6a7
eigenmath: enable tests 2023-04-08 23:19:59 +08:00
Nick Cao
16d7f06261
eigenmath: unstable-2023-03-05 -> unstable-2023-04-07 2023-04-08 15:00:16 +08:00
Nick Cao
6c38c33f01
eigenmath: add updateScript 2023-04-08 14:58:35 +08:00
github-actions[bot]
ee14a276ab
Merge master into haskell-updates 2023-04-07 00:11:54 +00:00
Justin Bedő
642ee2373c
Merge pull request #224827 from r-ryantm/auto-update/varscan 
varscan: 2.4.5 -> 2.4.6
 2023-04-06 22:51:16 +10:00
Nicolas Benes
3e886954ee spdlog: 1.10.0 -> 1.11.0 
Unpin from fmt_8.
 2023-04-06 07:25:19 +02:00
github-actions[bot]
6a7b8348a1
Merge master into haskell-updates 2023-04-06 00:11:55 +00:00
Sandro
5ea854454e
Merge pull request #224359 from hesiod/coin-utils 2023-04-06 01:08:07 +02:00
R. Ryantm
8fcdc3f62c varscan: 2.4.5 -> 2.4.6 2023-04-05 14:55:31 +00:00
Ellie Hermaszewska
bd54a9047d
tamarin-prover: Allow compiling with maude-3.3 2023-04-05 14:39:55 +08:00
Ryan Lahfa
ce35e61c3c
Merge pull request #221099 from evils/kicad 
kicad(-unstable): bump to latest version, cleanup and fixes
 2023-04-04 13:28:26 +02:00
Shamrock Lee
4e72d111e9 raspa: init at 2.0.47 and add tests 2023-04-03 20:53:23 +08:00
Weijia Wang
64a5b00d02
Merge pull request #224462 from wegank/scalp-mirror 
scalp: update mirror link
 2023-04-03 14:48:41 +03:00
Weijia Wang
4ad85a5c10 scalp: update mirror link 2023-04-03 14:16:03 +03:00
Tobias Markus
eae9398010 clp: Change license to epl20 2023-04-03 12:57:50 +02:00
Weijia Wang
150dcd7ce7
Merge pull request #224345 from natsukium/blast/darwin 
blast-bin: init at 2.13.0
 2023-04-03 09:59:08 +03:00
natsukium
cddb4a24ba
blast-bin: init at 2.13.0 2023-04-03 12:39:17 +09:00
Nick Cao
7613d23e78
Merge pull request #224414 from jbedo/last 
last: 1447 -> 1453
 2023-04-03 09:43:13 +08:00
Justin Bedo
e739dc5088
last: 1447 -> 1453 2023-04-03 08:38:27 +10:00
Vincenzo Mantova
acb02e2fab eukleides: move texlive dependencies to tlDeps 2023-04-02 13:00:52 +01:00
Tobias Markus
1718fc0b04 clp: 1.17.6 -> 1.17.7 2023-04-02 14:00:47 +02:00
Weijia Wang
4213fc7cde sasview: fix build 2023-04-02 15:00:07 +03:00
Vincenzo Mantova
6b2b9a0de3 eukleides: create pkgs fixpoint for texlive using mkDerivation 2023-04-02 12:58:47 +01:00
Nicolas Benes
c59f6c75b6 openroad: unstable-2022-07-19 -> unstable-2023-03-31 2023-04-02 05:44:19 +02:00
natsukium
5ac95120d5
pymol: remove broken mark for darwin 
The bug has been resolved by changing the backend to Qt
in this commit, ab3f0771a4.
 2023-04-01 20:41:01 +09:00
Michal Sojka
b1cb42d3b7 cppzmq: make zeromq propagatedBuildInput 
cppzmq is a header-only library. As such, it is not much useful
without zeromq, whose headers it includes. By having zeromq in
propagatedBuildInputs, we can simplify dependent expressions.

This change is motivated by
https://github.com/lopsided98/nix-ros-overlay/issues/255#issuecomment-1487590226.
The expressions in nix-ros-overlay are automatically generated and
since packages in other distributions where ROS runs need not to
explicitly depend on zeromq, the Nix expression should behave the
same. This way, nix-ros-overlay will not to have manually
patch/overlay the automatically generated expressions.
 2023-03-31 18:58:56 +02:00
Evils
23849267ee kicad-unstable: fix ngspice tests 2023-03-30 18:53:53 +02:00
MarcFontaine
2cfc128ca3
nanovna-saver: 0.5.4 -> 0.6.0 2023-03-30 10:58:55 +02:00
Evils
4f0de9463a kicad-unstable: 2023-02-14 -> 2023-03-29 
includes a fix for upstream issue 14346
  (attempting to installing pcbnew.py outside of $out)
 2023-03-30 09:22:08 +02:00
Nick Cao
2f73fede2a
calcmysky: unstable-2023-02-11 -> 0.3.0 
Diff: c5f2814528...v0.3.0
 2023-03-29 19:29:46 +08:00
Weijia Wang
626401c783
Merge pull request #220832 from wegank/glucose-bump 
glucose: 4.1 -> 4.2.1
 2023-03-29 09:13:21 +03:00
Weijia Wang
396b3b7271
Merge pull request #223075 from r-ryantm/auto-update/ginac 
ginac: 1.8.5 -> 1.8.6
 2023-03-29 00:27:26 +03:00
Mauricio Collares
a4f8bf2248
Merge pull request #223497 from r-ryantm/auto-update/primecount 
primecount: 7.6 -> 7.7
 2023-03-28 20:28:02 +02:00
Evils
7f3a08710a kicad: add requests runtime dependency 
required for some of the plugins
 2023-03-28 18:57:29 +02:00
Evils
d8020e1e17 kicad: remove withOCC and more cmakeFlags cleanup 
OCC is no longer optional
RPATH apparently no longer contains references to /build/
KICAD_SCRIPTING_WXPYTHON is ON by default

sort some of the options a bit

and remove stray lndir
 2023-03-28 18:57:29 +02:00
Evils
788df5456b kicad: 7.0.0 -> 7.0.1 
remove now integrated patches
 2023-03-28 18:57:29 +02:00
Weijia Wang
eac1ecb55a
Merge pull request #222531 from r-ryantm/auto-update/sumo 
sumo: 1.15.0 -> 1.16.0
 2023-03-28 16:47:07 +03:00
Nick Cao
98f3b08f58
Merge pull request #223453 from kilianar/stellarium-23.1 
stellarium: 1.2 -> 23.1
 2023-03-28 18:29:13 +08:00
Ali Caglayan
8fe1ea496b coq: 8.16.1 -> 8.17.0 
Signed-off-by: Ali Caglayan <alizter@gmail.com>
 2023-03-28 08:13:12 +02:00
R. Ryantm
3b3cc65701 primecount: 7.6 -> 7.7 2023-03-28 04:37:03 +00:00
kilianar
d19f5dedec stellarium: 1.2 -> 23.1 
https://github.com/Stellarium/stellarium/releases/tag/v23.1

Mitigates https://github.com/advisories/GHSA-7vmm-m8vp-g5h3
 2023-03-28 00:22:36 +02:00
kilianar
733e7c52c2 calcmysky: 0.2.1 -> unstable-203-02-11 2023-03-28 00:03:32 +02:00
Weijia Wang
c9d051b17d
Merge pull request #222979 from r-ryantm/auto-update/cvc5 
cvc5: 1.0.4 -> 1.0.5
 2023-03-27 09:36:32 +03:00
Sandro
c2ef479b62
Merge pull request #168773 from Leixb/megam-add-opt 2023-03-27 00:59:44 +02:00
Justin Bedő
c39e3d9b74
Merge pull request #221546 from NixOS/r-updates 
R: 4.2.2 -> 4.2.3
 2023-03-26 21:40:30 +00:00
github-actions[bot]
07fb9cae4e
Merge master into staging-next 2023-03-26 00:02:45 +00:00
Artturi
b213126ec0
Merge pull request #222766 from Artturin/fix-different-store 2023-03-25 22:17:07 +02:00
R. Ryantm
2cb2ee9630 ginac: 1.8.5 -> 1.8.6 2023-03-25 14:10:42 +00:00
R. Ryantm
bb270775f2 cvc5: 1.0.4 -> 1.0.5 2023-03-25 01:00:12 +00:00
github-actions[bot]
cead7e3e73
Merge master into staging-next 2023-03-25 00:02:20 +00:00
Weijia Wang
2ce97f2bf9
Merge pull request #222464 from r-ryantm/auto-update/diamond 
diamond: 2.1.5 -> 2.1.6
 2023-03-24 20:56:17 +02:00
Artturin
780669daf5 treewide: don't hardcode /nix/store (no rebuilds changes) 
improve experience for other store locations
 2023-03-24 20:11:33 +02:00
github-actions[bot]
adec6862c5
Merge master into staging-next 2023-03-24 18:01:06 +00:00
LeixB
d443805fe3
megam: add leixb as maintainer 2023-03-24 18:52:48 +01:00
LeixB
d85fae35d9
megam: add megam.opt binary 
- Add megam.opt (optimized native binary)
 2023-03-24 18:52:14 +01:00
Vladimír Čunát
1f1c1739d7
Merge #222442: R: override test for curl version 
...into staging-next
 2023-03-23 11:07:36 +01:00
R. Ryantm
d2bf9653de gretl: 2022c -> 2023a 2023-03-23 06:03:08 +00:00
github-actions[bot]
85f7b5276e
Merge master into staging-next 2023-03-22 18:01:11 +00:00
Luflosi
ddb714f68d
yices: fix typo in comment 2023-03-22 16:08:09 +01:00
Weijia Wang
120a484726
Merge pull request #220001 from wegank/isabelle-arm 
isabelle: add aarch64-linux support
 2023-03-22 16:15:34 +02:00
R. Ryantm
91c2c00aad sumo: 1.15.0 -> 1.16.0 2023-03-22 12:07:12 +00:00
github-actions[bot]
0537539006
Merge master into staging-next 2023-03-22 12:01:22 +00:00
Nick Cao
6c4095e7af
Merge pull request #222331 from r-ryantm/auto-update/seqkit 
seqkit: 2.3.1 -> 2.4.0
 2023-03-22 16:08:39 +08:00
R. Ryantm
4c2324cf14 diamond: 2.1.5 -> 2.1.6 2023-03-22 03:09:40 +00:00
MaxHearnden
bfbc0f56e5 override test for curl version 2023-03-21 22:50:14 +00:00
Vincent Laporte
48774c43cd
acgtk: use Dune 3 2023-03-21 13:05:53 +01:00
R. Ryantm
a6f33bd62f seqkit: 2.3.1 -> 2.4.0 2023-03-21 10:45:22 +00:00
R. Ryantm
4da1bc0bfa marvin: 22.13.0 -> 23.4.0 2023-03-21 07:22:28 +00:00
github-actions[bot]
bb48723d63
Merge master into staging-next 2023-03-21 00:02:39 +00:00
Vincent Laporte
e12230e716
why3: 1.5.1 → 1.6.0; ocamlPackages.lambdapi: 2.2.1 → 2.3.1 (#220986) 
why3: 1.5.1 → 1.6.0
ocamlPackages.lambdapi: 2.2.1 → 2.3.1

Co-authored-by: Weijia Wang <9713184+wegank@users.noreply.github.com>
 2023-03-20 20:45:47 +01:00
Martin Weinelt
9959ec97f8
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
- pkgs/development/python-modules/wxPython/4.0.nix
- pkgs/development/python-modules/wxPython/4.1.nix
 2023-03-20 15:07:36 +01:00
Weijia Wang
802b7ac3e7
Merge pull request #221743 from r-ryantm/auto-update/gatk 
gatk: 4.3.0.0 -> 4.4.0.0
 2023-03-20 14:33:37 +02:00
github-actions[bot]
96f7385465
Merge master into staging-next 2023-03-20 00:02:29 +00:00
Mauricio Collares
bd3de7859d
Merge pull request #221718 from wegank/sage-fix 
sage: add libpng to sagelib, import package update patches
 2023-03-19 19:31:02 +01:00
github-actions[bot]
84c97a9e91
Merge master into staging-next 2023-03-19 18:00:59 +00:00
Weijia Wang
2572ddc706
Merge pull request #221977 from wegank/mavproxy-wx 
mavproxy: migrate to wxPython_4_2
 2023-03-19 20:00:39 +02:00
Weijia Wang
a1e27cf0e9 sage: add libpng to sagelib 2023-03-19 19:33:36 +02:00
Mauricio Collares
c13d98c7bf sage: import python package upgrade fixes 2023-03-19 19:32:56 +02:00
natsukium
21affa5ff1
trf: init at 4.09.1 2023-03-19 22:25:42 +09:00
Weijia Wang
4fe9738427 mavproxy: migrate to wxPython_4_2 2023-03-19 10:29:51 +02:00
github-actions[bot]
c70342c89c
Merge master into staging-next 2023-03-19 00:02:27 +00:00
Weijia Wang
7574e25ef3
Merge pull request #221864 from natsukium/mafft/update 
mafft: 7.508 -> 7.515
 2023-03-19 00:03:19 +02:00
Weijia Wang
8da8071e37 glucose: 4.1 -> 4.2.1 2023-03-18 22:17:16 +02:00
github-actions[bot]
403b148aa5
Merge master into staging-next 2023-03-18 18:01:02 +00:00
Weijia Wang
0ddc01c569 glucose: refactor 2023-03-18 19:00:45 +02:00
natsukium
f3b75ef3ce
mafft: 7.508 -> 7.515 2023-03-19 00:42:29 +09:00
Weijia Wang
f15cf7e6af
Merge pull request #221809 from wegank/nest-bump 
nest: 3.3 -> 3.4
 2023-03-18 17:17:18 +02:00
github-actions[bot]
a912b83051
Merge master into staging-next 2023-03-18 12:01:30 +00:00
Weijia Wang
b45fe715d9
Merge pull request #217922 from r-ryantm/auto-update/openboardview 
openboardview: 9.0.3 -> 9.95.0
 2023-03-18 13:00:52 +02:00
Fabian Affolter
109f8ccdfe
nest: specify license 2023-03-18 11:23:52 +01:00
Fabian Affolter
c7ec291235
nest: add changelog to meta 2023-03-18 11:23:06 +01:00
Weijia Wang
ea847dd1a0 nest: 3.3 -> 3.4 2023-03-18 12:13:46 +02:00
R. Ryantm
0d44f838ca gatk: 4.3.0.0 -> 4.4.0.0 2023-03-18 01:10:14 +00:00
K900
a5a292c7a8 treewide: clear out remaining qt5 conditionals 2023-03-18 02:10:20 +03:00
github-actions[bot]
d761f69867
Merge master into staging-next 2023-03-17 17:57:00 +00:00
Markus Kowalewski
545b5d04f4
openmolcas: 22.10 -> 23.02 2023-03-17 13:33:41 +01:00
github-actions[bot]
2394986204
Merge master into staging-next 2023-03-17 12:01:17 +00:00
Weijia Wang
9c8a92bcde
Merge pull request #205310 from r-ryantm/auto-update/sumo 
sumo: 1.9.2 -> 1.15.0
 2023-03-17 12:56:48 +02:00
github-actions[bot]
f5629a4518
Merge master into staging-next 2023-03-17 06:01:16 +00:00
Weijia Wang
854414836c
Merge pull request #221529 from wegank/qalculate-qt-darwin 
qalculate-qt: add darwin support
 2023-03-17 07:47:56 +02:00
Justin Bedő
bf32c70253
Merge pull request #221559 from r-ryantm/auto-update/subread 
subread: 2.0.3 -> 2.0.4
 2023-03-17 01:57:57 +00:00
github-actions[bot]
6746017444
Merge master into staging-next 2023-03-17 00:02:33 +00:00
R. Ryantm
2a35b86739 subread: 2.0.3 -> 2.0.4 2023-03-16 23:09:44 +00:00
markuskowa
0fea9287f4
Merge pull request #221301 from sheepforce/plumed 
plumed: init at 2.8.2
 2023-03-16 20:43:54 +01:00
Weijia Wang
5c214fb163 qalculate-qt: add darwin support 2023-03-16 21:31:51 +02:00
github-actions[bot]
455127ad5e
Merge master into staging-next 2023-03-16 18:01:20 +00:00
Weijia Wang
183c970c9a
Merge pull request #221403 from r-ryantm/auto-update/gama 
gama: 2.23 -> 2.24
 2023-03-16 18:03:12 +02:00
Weijia Wang
de6210e074
Merge pull request #217539 from GenericNerdyUsername/horizon-occ 
horizon-eda: switch from OCE to OCC
 2023-03-16 17:20:47 +02:00
Bernardo Meurer
6e55733359
Merge pull request #219747 from Stunkymonkey/deprecate-isNull 2023-03-16 11:10:22 -03:00
Phillip Seeber
09b52c631a cp2k: enable plumed plugin 
cp2k: enable plumed plugin


cp2k: use mpicxx to figure out link lines
 2023-03-16 14:30:27 +01:00
github-actions[bot]
80a0ae17b5
Merge master into staging-next 2023-03-16 12:01:29 +00:00
Vladimír Čunát
0f9354bfee
Merge #218309: ffmpeg: ffmpeg_4 → ffmpeg_5 
...into staging
 2023-03-16 11:11:31 +01:00
Weijia Wang
b3e468975f
Merge pull request #221402 from r-ryantm/auto-update/uarmsolver 
uarmsolver: 0.2.4 -> 0.2.5
 2023-03-16 09:09:24 +02:00
R. Ryantm
166bed2b29 gama: 2.23 -> 2.24 2023-03-16 00:43:50 +00:00
R. Ryantm
139df052d5 uarmsolver: 0.2.4 -> 0.2.5 2023-03-16 00:42:06 +00:00
github-actions[bot]
a8ddab03b5
Merge staging-next into staging 2023-03-16 00:03:10 +00:00
Weijia Wang
b8aec5ff2d
Merge pull request #221107 from r-ryantm/auto-update/openhantek6022 
openhantek6022: 3.3.2.1 -> 3.3.2.2
 2023-03-15 22:09:12 +02:00
Martin Weinelt
19680e9902
Merge pull request #217568 from trofi/stdenv-parallel-install 
stdenv/generic/setup.sh: enable parallel installs for parallel builds
 2023-03-15 17:10:19 +00:00
Justin Bedo
5eff9f1940
R: 4.2.2 -> 4.2.3 2023-03-15 22:51:17 +11:00
Martin Weinelt
9e4d592114
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
- pkgs/development/python-modules/eve/default.nix
 2023-03-14 16:49:37 +01:00
Weijia Wang
6bade5f7df tamarin-prover: only use glibcLocales on linux 2023-03-14 15:55:12 +02:00
Philipp Middendorf
f43390024c crystfel: more review fixes 2023-03-14 08:36:38 +01:00
Martin Weinelt
6b67186fe9
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
- pkgs/development/python-modules/crownstone-cloud/default.nix
- pkgs/development/python-modules/exrex/default.nix
- pkgs/development/python-modules/mkdocs-minify/default.nix
- pkgs/development/python-modules/myjwt/default.nix
- pkgs/development/tools/analysis/checkov/default.nix
 2023-03-14 08:14:26 +01:00
Weijia Wang
5a0dde3bf1
Merge pull request #221042 from r-ryantm/auto-update/calc 
calc: 2.14.1.3 -> 2.14.1.5
 2023-03-14 08:23:20 +02:00
R. Ryantm
58a2c5a184 openhantek6022: 3.3.2.1 -> 3.3.2.2 2023-03-14 03:37:23 +00:00
Artturi
b978bf0f0f
Merge pull request #220570 from Artturin/fixlints1 2023-03-14 02:15:55 +02:00
Atemu
9bd2506458 treewide: make ffmpeg_4-dependant packages depend on ffmpeg_4 
These packages were identified as broken when ffmpeg = ffmpeg_5.

Tested _only_ by building them. If you are a maintainer of one of these
packages, please test whether your package still works.
 2023-03-13 16:42:22 -06:00
R. Ryantm
70723fce93 calc: 2.14.1.3 -> 2.14.1.5 2023-03-13 18:59:18 +00:00
Vladimír Čunát
2d51a0e8ad
Merge branch 'master' into staging-next 2023-03-13 08:25:10 +01:00
Austin Seipp
787381926a tamarin-prover: set LOCALE_ARCHIVE in wrapper 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2023-03-12 19:06:58 -05:00
Luflosi
e8f1fcd350 abc-verifier: unstable-2023-02-04 -> unstable-2023-02-23 2023-03-12 18:10:19 -05:00
Martin Weinelt
5abe72f0b2 Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
- pkgs/development/python-modules/mdutils/default.nix
 2023-03-12 15:59:15 +01:00
Mauricio Collares
652e253e26
Merge pull request #220559 from amesgen/fix-sage 
sage: fix build by downgrading maxima to 5.45
 2023-03-12 14:51:57 +01:00
Vladimír Čunát
1dd94ad62f
Merge branch 'master' into staging-next 2023-03-12 09:06:28 +01:00
R. Ryantm
77c83ddbc9 diamond: 2.1.4 -> 2.1.5 2023-03-11 18:22:58 +00:00
github-actions[bot]
140a35879a
Merge master into staging-next 2023-03-11 12:01:11 +00:00
Artturin
cab4a24c34 treewide: fix lints 
Arg to lib.optional is a list

build time tool in buildInputs
 2023-03-11 00:55:17 +02:00
amesgen
0a1a3e9d95
maxima-ecl: fix build by removing upstreamed patch 2023-03-10 21:57:12 +01:00
amesgen
70b827c60a
sage: fix build by downgrading maxima to 5.45 2023-03-10 21:55:54 +01:00
Martin Weinelt
ef91384e6f Merge remote-tracking branch 'origin/master' into staging-next 2023-03-10 13:09:25 +01:00
Yueh-Shun Li
564e20e62d
Revert "root: remove the already-default CMAKE_INSTALL_*DIR flags" (#220437) 
For some reason, this makes $out/bin/rootcint disappear

$out/bin/rootcint is a duplication of $out/bin/rootcling
for compatibility reason

This reverts commit c09e03c1a6.
 2023-03-10 01:48:11 -05:00
Sergei Trofimovich
03be09d518 gretl: disable install parallelism 
Without the change parallel installs fail as:

    cp: cannot stat '...-gretl-2022c/share/gretl/data/plotbars': Not a directory
    make[1]: *** [Makefile:73: install_datafiles] Error 1
 2023-03-09 22:29:59 +00:00
Martin Weinelt
4729f61158 Merge remote-tracking branch 'origin/master' into staging-next 2023-03-08 15:04:13 +01:00
Doron Behar
ba4d56e20e tamarin-prover: install vim-plugin to nvim/site 2023-03-08 12:32:40 +02:00
Philipp Middendorf
d980b91866 crystfel: review fixes 2023-03-08 08:57:52 +01:00
github-actions[bot]
f1b48b2a95
Merge master into staging-next 2023-03-07 18:01:12 +00:00
R. RyanTM
02cd0a5dfc
sherpa: 2.2.13 -> 2.2.14 (#220016) 2023-03-07 12:47:54 -05:00
Weijia Wang
3e5f408e73 isabelle: add aarch64-linux support 2023-03-07 18:20:46 +02:00
Martin Weinelt
e3f019bb71 Merge remote-tracking branch 'origin/master' into staging-next 2023-03-07 15:05:00 +01:00
Atemu
acdc303ed7
Merge pull request #219836 from wegank/leo2-darwin 
leo2, statverif: add darwin support
 2023-03-07 13:24:35 +01:00
Philipp Middendorf
da46337f0e crystfel: enable aarch64-* and external filter plugins on Darwin 2023-03-07 09:52:58 +01:00
github-actions[bot]
fa94414f70
Merge master into staging-next 2023-03-07 00:02:41 +00:00
Doron Behar
33c9fd85e5
Merge pull request #219838 from alyaeanyx/qalculate-4.6.0 
{libqalculate, qalculate-gtk, qalculate-qt}: 4.5.1 -> 4.6.0
 2023-03-07 01:11:37 +02:00
Weijia Wang
3d70562dfd leo2: add darwin support 2023-03-07 00:10:09 +02:00
Felix Buehler
d10e69c86b treewide: deprecate isNull 
https://nixos.org/manual/nix/stable/language/builtins.html#builtins-isNull
 2023-03-06 22:40:04 +01:00
Ilan Joselevich
e398da1460
Merge pull request #219606 from wegank/vampire-aarch64 
vampire: unbreak on aarch64-linux
 2023-03-06 22:19:54 +02:00
Martin Weinelt
bcf6c81a88 Merge remote-tracking branch 'origin/master' into staging-next 2023-03-06 16:55:14 +00:00
Samuel Ainsworth
e1fbe85b0a
Merge pull request #218265 from SomeoneSerge/hotfix-nvcc-gcc-incompatibility 
cudaPackages: point nvcc at a compatible -ccbin
 2023-03-06 11:38:18 -05:00
alyaeanyx
2d1959e445 libqalculate, qalculate-gtk: 4.5.1 -> 4.6.0 2023-03-06 15:17:20 +01:00
K900
2fe3640540
Merge pull request #219425 from wegank/gcc12-cleanup 
treewide: remove -lgcc from NIX_LDFLAGS
 2023-03-06 17:05:12 +03:00
github-actions[bot]
a5961d9534
Merge master into staging-next 2023-03-06 12:01:40 +00:00
Weijia Wang
55bb9cd6c0
Merge pull request #219604 from wegank/glsurf-ocaml 
glsurf: migrate to OCaml 4.14
 2023-03-06 11:05:05 +02:00
github-actions[bot]
cb98531909
Merge master into staging-next 2023-03-05 18:01:28 +00:00
Nick Cao
794f34657e
Merge pull request #219625 from NickCao/eigenmath 
eigenmath: init at unstable-2023-03-05
 2023-03-05 23:20:20 +08:00
Martin Weinelt
8a085cd8e3 Merge remote-tracking branch 'origin/master' into staging-next 2023-03-05 15:36:16 +01:00
Weijia Wang
e6725b74f8
Merge pull request #219515 from r-ryantm/auto-update/diamond 
diamond: 2.1.3 -> 2.1.4
 2023-03-05 13:59:24 +02:00
Guillaume Girol
768a866917
Merge pull request #216864 from ShamrockLee/root-debug-info 
root: separateDebugInfo = true
 2023-03-05 10:28:50 +00:00
Weijia Wang
a56529a95f glsurf: fix runtime error 2023-03-05 12:05:39 +02:00
Nick Cao
32b51c198f
eigenmath: init at unstable-2023-03-05 2023-03-05 16:17:38 +08:00
github-actions[bot]
6413316565
Merge master into staging-next 2023-03-05 06:01:04 +00:00
Doron Behar
a1240f6b4a
Merge pull request #219171 from doronbehar/pkg/maxima 
maxima: 5.45.1 -> 5.46.0
 2023-03-05 07:58:10 +02:00
Martin Weinelt
c76553c9a6 Merge remote-tracking branch 'origin/master' into staging-next 2023-03-05 01:14:06 +00:00
Weijia Wang
3796e59136 vampire: unbreak on aarch64-linux 2023-03-05 02:21:12 +02:00
Weijia Wang
cc4169d737 glsurf: migrate to OCaml 4.14 2023-03-05 02:03:44 +02:00
Weijia Wang
1148f28242 cubicle: set env instead of postPatch 2023-03-05 01:44:26 +02:00
Yueh-Shun Li
b96226578e
root: specify separateDebugInfo = true for all pltforms 2023-03-05 03:30:17 +08:00
R. Ryantm
e175a2ea68 diamond: 2.1.3 -> 2.1.4 2023-03-04 15:44:53 +00:00
Weijia Wang
ac62a206b7 root: remove -lgcc from NIX_LDFLAGS 2023-03-04 11:51:34 +02:00
Yueh-Shun Li
c89c22a9c2 root: separateDebugInfo = true on Linux 2023-03-04 15:05:26 +08:00
Martin Weinelt
d0286ecd24 Merge remote-tracking branch 'origin/staging' into staging-next 2023-03-04 01:42:06 +00:00
Someone Serge
d378cc6fb2
opencv4: respect config.cudaCapabilities 
This is needed for faster builds when debugging the opencv derivation,
and it's more consistent with other cuda-enabled packages

-DCUDA_GENERATION seems to expect architecture names, so we refactor
cudaFlags to facilitate easier extraction of the configured archnames
 2023-03-04 00:59:21 +02:00
Justin Bedő
5ba0152b6c
Merge pull request #218998 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.27.5 -> 3.0.0
 2023-03-03 22:26:27 +00:00
Doron Behar
f002f6e8ab wxmaxima: 22.12.0 -> 23.02.1 
Diff: https://github.com/wxMaxima-developers/wxmaxima/compare/Version-22.12.0...23.02.1
 2023-03-02 15:11:08 +02:00
Doron Behar
b53da37836 maxima: 5.45.1 -> 5.46.0 2023-03-02 15:11:00 +02:00
github-actions[bot]
736c488efe
Merge staging-next into staging 2023-03-01 18:01:48 +00:00
R. Ryantm
99785ee90e picard-tools: 2.27.5 -> 3.0.0 2023-03-01 14:43:38 +00:00
Sandro
2c6a017a7e
Merge pull request #217622 from ksenia-portu/mathematica 
mathematica: 13.2.0 -> 13.2.1
 2023-03-01 13:32:33 +01:00
github-actions[bot]
5f2d948a2c
Merge staging-next into staging 2023-03-01 12:02:17 +00:00
Sandro
b687a76e0e
Merge pull request #217982 from pmiddend/crystfel-0.10.2 
crystfel: 0.10.1 → 0.10.2
 2023-03-01 11:45:16 +01:00
Martin Weinelt
3686005e6e Merge remote-tracking branch 'origin/staging-next' into staging 2023-02-28 21:17:51 +00:00
Weijia Wang
4389f86425
Merge pull request #211867 from wegank/scilab-bin-refactor 
scilab-bin: refactor
 2023-02-28 22:29:34 +02:00
Weijia Wang
ccd9d6da1e
Merge pull request #218118 from r-ryantm/auto-update/diamond 
diamond: 2.1.1 -> 2.1.3
 2023-02-27 21:28:18 +02:00
Artturi
1c6a1e5650
Merge pull request #218500 from alyssais/pythonForBuild 2023-02-27 18:17:27 +02:00
Weijia Wang
21bb99733d
Merge pull request #218342 from r-ryantm/auto-update/bcftools 
bcftools: 1.16 -> 1.17
 2023-02-27 18:02:55 +02:00
Philipp Middendorf
fca0501c76 crystfel: 0.10.1 → 0.10.2 2023-02-27 09:01:51 +01:00
Alyssa Ross
2bfa93e01c
treewide: python{ => .pythonForBuild}.interpreter 
It won't be enough to fix cross in all cases, but it is in at least
one: pywayland.  I've only made the change in cases I'm confident it's
correct, as it would be wrong to change this when python.interpreter
is used in wrappers, and possibly when it's used for running tests.
 2023-02-26 20:26:17 +00:00
Weijia Wang
b390b634c4
Merge pull request #218384 from r-ryantm/auto-update/neuron-full 
neuron-full: 8.2.1 -> 8.2.2
 2023-02-26 18:42:25 +02:00