10285 Commits

Author	SHA1	Message	Date
Olivér Falvai	f6ecf9784c	uhdm: fix darwin build	2024-11-02 14:26:30 +01:00
Nick Cao	d441bf480d	seqkit: 2.8.2 -> 2.9.0 (#352925)	2024-11-02 09:17:28 -04:00
Sefa Eyeoglu	6f860c1245	jbrowse: 2.15.4 -> 2.16.0 (#352036)	2024-11-01 23:56:19 +01:00
R. Ryantm	269236bbd4	seqkit: 2.8.2 -> 2.9.0	2024-11-01 16:52:07 +00:00
Weijia Wang	723a414a27	systemc: 3.0.0 -> 3.0.1 (#349464)	2024-11-01 14:57:17 +01:00
Mauricio Collares	2a1725e211	sage: fix gc-related hypellfrob.pyx test failure (#352810)	2024-11-01 14:47:28 +01:00
Weijia Wang	0016082501	sumo: 1.20.0 -> 1.21.0 (#348611)	2024-11-01 13:49:22 +01:00
Weijia Wang	e9964f6d61	gtkwave: 3.3.120 -> 3.3.121 (#348706)	2024-11-01 13:25:32 +01:00
Weijia Wang	143d5c9d69	siril: 1.2.3 -> 1.2.4 (#348719)	2024-11-01 13:16:01 +01:00
Weijia Wang	879ffcb4e8	simgrid: 3.35 -> 3.36 (#348293)	2024-11-01 12:54:28 +01:00
Mauricio Collares	434a9ccdba	sage: fix gc-related hypellfrob.pyx test failure	2024-11-01 08:47:45 +01:00
Weijia Wang	5750d458ab	fast-downward: 23.06.0 -> 24.06.0 (#347848)	2024-11-01 04:07:59 +01:00
R. Ryantm	171d219159	caneda: 0.3.1 -> 0.4.0	2024-11-01 00:00:03 +00:00
Tomo	22f235290d	key: 2.10.0 -> 2.12.2 (#350313)	2024-10-31 14:02:58 -07:00
Fabian Affolter	3c9071f916	python312Packages.types-requests: 2.32.0.20240914 -> 2.32.0.20241016 (#349418)	2024-10-31 17:57:41 +01:00
Fabian Affolter	5f587e764d	cwltool: 3.1.20240708091337 -> 3.1.20241024121129 ... Diff: https://github.com/common-workflow-language/cwltool/compare/refs/tags/3.1.20241024121129...3.1.20241024121129 Changelog: https://github.com/common-workflow-language/cwltool/releases/tag/3.1.20241024121129	2024-10-31 12:53:03 +01:00
FliegendeWurst	65082aa666	key: 2.10.0 -> 2.12.2	2024-10-31 09:49:58 +01:00
Reno Dakota	8fa1386a98	apbs: add libutil for darwin	2024-10-31 07:26:33 +00:00
R. Ryantm	ee0e666076	gatk: 4.6.0.0 -> 4.6.1.0	2024-10-31 06:46:36 +00:00
K900	6968567d60	Merge remote-tracking branch 'origin/master' into staging-next	2024-10-30 21:25:05 +03:00
Markus Kowalewski	5d3d5b89df	openmolcas: remove static libraries in output (#352074)	2024-10-30 16:15:18 +01:00
Nick Cao	8a1dde7920	sv-lang: fix cross compilation (#351901)	2024-10-30 09:20:27 -04:00
Markus Kowalewski	5ad947701f	openmolcas: apply nixfmt	2024-10-30 10:37:10 +01:00
Markus Kowalewski	356e7ac19c	openmolcas: remove nested with in meta	2024-10-30 10:37:10 +01:00
Markus Kowalewski	00e7e7f70b	openmolcas: remove superflous cmakeFlag for openblas	2024-10-30 10:37:10 +01:00
Markus Kowalewski	adaaba7b85	openmolcas: properly build shared libs. ... Remove unneeded static libs when build as static build.	2024-10-30 10:37:05 +01:00
Robert Scott	5c750ede24	openrefine: 3.8.2 -> 3.8.5	2024-10-29 22:45:26 +00:00
github-actions[bot]	09d8c7ec2f	Merge master into staging-next	2024-10-29 18:04:32 +00:00
7c6f434c	9ec0e7ca4e	sage: work around glpk aarch64 issue instead of disabling test (#351248)	2024-10-29 15:57:38 +00:00
github-actions[bot]	6bc001ea3b	Merge master into staging-next	2024-10-29 12:06:00 +00:00
OTABI Tomoya	31ce2c564f	libcifpp: 7.0.4 -> 7.0.7; dssp: 4.4.8 -> 4.4.10 (#349679)	2024-10-29 18:00:21 +09:00
R. Ryantm	1779edf359	jbrowse: 2.15.4 -> 2.16.0	2024-10-29 06:25:09 +00:00
K900	0c45a8b5c4	Merge remote-tracking branch 'origin/master' into staging-next	2024-10-28 21:46:13 +03:00
Aleksana	b9bef336b2	xschem: 3.4.4 -> 3.4.5 (#350226)	2024-10-28 22:51:45 +08:00
Nick Cao	e7a0b152a6	sv-lang: fix cross compilation	2024-10-28 10:27:58 -04:00
Fabián Heredia Montiel	34b62f7c47	Merge remote-tracking branch 'origin/master' into staging-next	2024-10-27 16:10:56 -06:00
kilianar	e7be252513	stellarium: use lib.getExe in tests.version for xvfb-run	2024-10-27 21:23:15 +01:00
Nick Cao	bb579bc293	eigenmath: 3.27-unstable-2024-10-02 -> 3.27-unstable-2024-10-18 (#351034)	2024-10-27 10:17:51 -04:00
Artturin	101a57cbf7	root: workaround upsteam issue 14778 (#292446)	2024-10-27 15:58:24 +02:00
Weijia Wang	2c61d97aa1	nvc: 1.14.0 -> 1.14.1 (#351505)	2024-10-27 13:24:03 +01:00
Mauricio Collares	8a1337980b	[staging-next] sage: import sympy and numpy update patches (#351470)	2024-10-27 10:37:35 +01:00
Aleksana	1cc1588ef9	bwa-mem2: fix build on x86_64-darwin (#351356)	2024-10-27 11:54:29 +08:00
R. Ryantm	dadeac0a1a	nvc: 1.14.0 -> 1.14.1	2024-10-26 23:41:13 +02:00
Mauricio Collares	ec99bd832d	sage: work around glpk aarch64 issue instead of disabling test	2024-10-26 21:10:47 +02:00
Francesco Gazzetta	68576df997	treewide: move tcl libraries under tclPackages	2024-10-26 16:23:15 +00:00
Mauricio Collares	32f02aed22	sage: import sympy and numpy update patches	2024-10-26 17:35:23 +02:00
Markus Kowalewski	febb639ea4	openmolcas: 24.06 -> 24.10, make qcmaquis optional (#351201)	2024-10-26 16:33:22 +02:00
natsukium	afaf2aab04	bwa-mem2: fix build on x86_64-darwin	2024-10-26 15:48:16 +09:00
Guillaume Girol	5584e3590e	bitwuzla: 0.5.0 -> 0.6.0 (#350779)	2024-10-25 23:39:04 +02:00
Phillip Seeber	9d247d73c9	openmolcas: 24.06 -> 24.10, make qcmaquis optional	2024-10-25 17:29:22 +02:00
R. Ryantm	d1c9a5003a	cytoscape: 3.10.2 -> 3.10.3	2024-10-25 05:05:59 +00:00
Nick Cao	710da54cbf	eigenmath: 3.27-unstable-2024-10-02 -> 3.27-unstable-2024-10-18 ... Diff: 57a7c74623...a9d3be2c64	2024-10-24 17:32:03 -04:00
Vincent Laporte	9d28bd753f	cadical: enable version 2.0.0 and use it in cvc5	2024-10-24 16:40:10 +02:00
R. Ryantm	40e5d1b10e	bitwuzla: 0.5.0 -> 0.6.0	2024-10-23 20:02:05 +00:00
piegames	ad8d051645	treewide: Fix indentation in strings (#350296)	2024-10-23 21:44:22 +02:00
Mauricio Collares	7dace11053	jmol: 16.2.21 -> 16.3.1 (#349514)	2024-10-23 13:18:16 +02:00
Mauricio Collares	14727d96eb	sage: use jre8	2024-10-22 22:24:57 +02:00
piegames	68927918d0	treewide: Fix indentation in strings ... The indentation stripping semantics of strings are fairly bad and have a few gotchas where the resulting string has not the intended indentation. This commit fixes most if not all such instances in Nixpkgs. I tried to strive a balance between keeping the diff small and reformatting/refactoring the code to look better. In general, reformatting should be left to Nixfmt. Note that this causes a lot of rebuilds by design. All changes need to be thoroughly vetted and reviewed for correctness. There is no automatic way to prove correctness. List of files to fix generated by running https://gerrit.lix.systems/c/lix/+/2092 on Nixpkgs and looking at the warnings.	2024-10-22 21:36:42 +02:00
Mauricio Collares	7783a48f38	polymake: 4.12 -> 4.13 (#348571)	2024-10-22 17:43:18 +02:00
Markus Kowalewski	c4875a446f	mpiCheckPhaseHook: add parameters to bypass errors in sandbox (#350112)	2024-10-21 14:11:57 +02:00
Federico Beffa	cfd8f6613b	xschem: move to name based directory	2024-10-21 14:01:30 +02:00
Federico Beffa	87c7e94cff	xschem: 3.4.4 -> 3.4.5	2024-10-21 13:58:47 +02:00
qbisi	3e08945b40	nwchem: mark supported on aarch64	2024-10-21 07:21:19 +08:00
qbisi	3aeaac6b8e	nwchem: replace nativeCheckInputs with nativeInstallCheckInputs	2024-10-21 07:21:08 +08:00
Dmitry Kalinkin	306aabb533	bump yoda and rivet to next major versions, switch to hepmc3 (#349825)	2024-10-20 17:47:05 -04:00
Dmitry Kalinkin	6fc8fe28aa	rivet: 3.1.10 -> 4.0.1	2024-10-19 13:34:21 -04:00
Dmitry Kalinkin	082c425593	sherpa: 2.2.15 -> 2.2.16	2024-10-19 13:34:21 -04:00
R. Ryantm	3dd4dedc78	diamond: 2.1.9 -> 2.1.10	2024-10-19 14:23:13 +00:00
Peder Bergebakken Sundt	2e76e61c3c	crystfel: 0.11.0 -> 0.11.1 (#348763)	2024-10-19 05:42:22 +02:00
Peder Bergebakken Sundt	c0ff432b79	mavproxy: 1.80.70 -> 1.8.71 (#348020)	2024-10-19 05:07:14 +02:00
natsukium	1857e1080e	dssp: 4.4.8 -> 4.4.10 ... Diff: https://github.com/PDB-REDO/dssp/compare/refs/tags/v4.4.8...v4.4.10 Changelog: https://github.com/PDB-REDO/dssp/releases/tag/v4.4.10	2024-10-19 11:31:00 +09:00
Justin Bedő	58e4dcdf86	last: 1550 -> 1592 (#349510)	2024-10-19 08:28:48 +11:00
R. Ryantm	df4ed58e09	jmol: 16.2.21 -> 16.3.1	2024-10-18 10:42:18 +00:00
R. Ryantm	dfcd56c83b	last: 1550 -> 1592	2024-10-18 10:40:57 +00:00
7c6f434c	6d43118283	golly: 4.2 -> 4.3	2024-10-18 10:21:23 +02:00
R. Ryantm	50993cc4ec	systemc: 3.0.0 -> 3.0.1	2024-10-18 06:00:49 +00:00
Aleksana	b003f9debf	cadical: 2.0.0 -> 2.1.0 (#348755)	2024-10-17 17:36:02 +08:00
Sam Connelly	5c30edb481	cemu-ti: Fix build failure	2024-10-16 07:03:18 -04:00
Gaetan Lepage	3c971bb4f9	snakemake: move to by-name	2024-10-16 08:34:58 +02:00
R. Ryantm	1815d5a7a7	verilator: 5.026 -> 5.028	2024-10-15 11:16:32 -05:00
lassulus	8035ca55f7	kissat: 3.1.1 -> 4.0.1 (#348312)	2024-10-15 14:37:45 +02:00
Stanisław Pitucha	f5623c3bd0	cmtk: darwin (#348718)	2024-10-15 21:54:35 +11:00
R. Ryantm	47ebcc0e07	cadical: 2.0.0 -> 2.1.0	2024-10-15 10:13:43 +00:00
Doron Behar	b7f91a266c	wxmaxima: 24.05.0 -> 24.08.0 (#348539)	2024-10-15 12:27:53 +03:00
Stanisław Pitucha	9f1d63f8d4	cmtk: darwin ... Fix the Darwin build. It required the same c++ standard setting as other platforms. Moved the options to cmake format too.	2024-10-15 18:48:24 +11:00
R. Ryantm	f9705e4143	siril: 1.2.3 -> 1.2.4	2024-10-15 07:45:19 +00:00
R. Ryantm	4f3bcc9c10	gtkwave: 3.3.120 -> 3.3.121	2024-10-15 06:51:38 +00:00
R. Ryantm	9032da8307	sumo: 1.20.0 -> 1.21.0	2024-10-14 19:50:08 +00:00
R. Ryantm	01a21114cf	polymake: 4.12 -> 4.13	2024-10-14 16:58:07 +00:00
Nick Cao	63e9af1f34	stacks: 2.66 -> 2.68 (#348422)	2024-10-14 12:21:55 -04:00
R. Ryantm	31ca06ca58	wxmaxima: 24.05.0 -> 24.08.0	2024-10-14 13:52:23 +00:00
Philipp Middendorf	1747c62f4b	crystfel: 0.11.0 -> 0.11.1	2024-10-14 14:37:42 +02:00
R. Ryantm	62caef981e	stacks: 2.66 -> 2.68	2024-10-14 03:53:28 +00:00
R. Ryantm	89f13435d2	subread: 2.0.6 -> 2.0.7	2024-10-14 03:01:38 +00:00
Fabián Heredia Montiel	9c57494b9d	mathematica: fix incorrect matchesDoc with #343491 (#346696)	2024-10-13 13:08:59 -06:00
R. Ryantm	ff278c2f61	kissat: 3.1.1 -> 4.0.1	2024-10-13 17:07:02 +00:00
R. Ryantm	11adc2031c	simgrid: 3.35 -> 3.36	2024-10-13 15:40:24 +00:00
R. Ryantm	3dc84bdd7c	gp2c: 0.0.13 -> 0.0.14	2024-10-13 10:34:38 +00:00
R. Ryantm	2d683b3884	clp: 1.17.9 -> 1.17.10	2024-10-13 10:34:03 +00:00
github-actions[bot]	4433a315bd	Merge master into staging-next	2024-10-12 12:05:08 +00:00