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6871 Commits

Author SHA1 Message Date
Weijia Wang
017015a82b aspino: fix build 2022-11-25 16:48:03 +01:00
Bobby Rong
e34bc8cc1a
Merge pull request #198055 from jdupak/master 
QtRVSim: 0.9.3 -> 0.9.4
 2022-11-25 22:50:43 +08:00
Bobby Rong
4315ef82eb
Merge pull request #202657 from 4825764518/master 
qalculate-qt: update supported platforms
 2022-11-25 21:51:45 +08:00
R. Ryantm
d9af397634 cbmc: 5.70.0 -> 5.71.0 2022-11-25 08:37:13 +00:00
Jonas Heinrich
20193b6d86
Merge pull request #202395 from thyol/muscle 
muscle: 3.8.31 -> 5.1.0
 2022-11-24 15:47:12 +01:00
Guillaume Girol
6f9188b26b
Merge pull request #201759 from collares/giac-1.9.0.29 
giac: 1.9.0-5 -> 1.9.0-29
 2022-11-24 14:16:03 +00:00
Jonas Heinrich
57728b51cf
Merge pull request #202404 from thyol/veryfasttree 
veryfasttree: init at 3.1.1
 2022-11-24 15:14:13 +01:00
Sandro
2ca694f473
Merge pull request #198552 from wegank/wxgtk-games 2022-11-24 14:21:25 +01:00
4825764518
9c363bae16
qalculate-qt: update supported platforms 2022-11-24 05:37:05 -05:00
R. Ryantm
471d8bb07a opensmt: 2.4.2 -> 2.4.3 2022-11-22 20:15:56 +00:00
thyol
cdcb7946ba veryfasttree: init at 3.1.1 2022-11-22 20:45:45 +01:00
thyol
35d3a6fa79 muscle: add myself to maintainers 2022-11-22 20:19:17 +01:00
thyol
d7c8595f62 muscle: 3.8.31 -> 5.1.0 2022-11-22 20:19:17 +01:00
R. Ryantm
7e88b2bef5 form: 4.2.1 -> 4.3.0 2022-11-22 12:01:40 -05:00
Sandro Jäckel
c7f5becba3 dbus: remove unused daemon passhtru 2022-11-21 20:23:00 +01:00
R. Ryantm
6ba0d20487 igv: 2.14.1 -> 2.15.1 2022-11-20 14:06:29 +08:00
R. Ryantm
862277ac9d kstars: 3.6.0 -> 3.6.1 2022-11-20 10:52:50 +08:00
Markus Kowalewski
57d39374e2
gromacs: 2022.3 -> 2022.4 2022-11-18 14:37:22 +01:00
Mauricio Collares
339f72586a giac: 1.9.0-5 -> 1.9.0-29 2022-11-18 09:15:22 -03:00
Pascal Bach
b85c2a060f
Merge pull request #200871 from lorenz/update-dsview 
dsview: 1.1.2 -> 1.2.1
 2022-11-16 21:18:59 +01:00
sternenseemann
a110f08f12 ocamlPackages.extlib: rename from ocaml_extlib 
This matches the name used in dune and on OPAM.
 2022-11-16 14:30:37 +01:00
Grace Dinh
d3153abe7d accelergy: init at unstable-2022-05-03 2022-11-15 17:06:02 -08:00
Sandro Jäckel
da3200b7b6
Revert "gplates: fix failing build" 
This reverts commit 8a236e246a.
 2022-11-16 00:29:02 +01:00
Sergei Trofimovich
e4d99ffc58
Merge pull request #201383 from yurket/d-seams_zhf_fix 
d-seams: fix failing build
 2022-11-15 22:57:02 +00:00
yurket
4e4a021fd7 d-seams: fix failing builds 
cxxopts failing to build with clang11:

  /build/source/src/include/external/cxxopts.hpp:488:42: error: no member named 'numeric_limits' in namespace 'std'
            if (u > static_cast<U>(-std::numeric_limits<T>::min()))

Use the patch from upstream, which updates cxxopts 2.2.0 -> 3.0.0
 2022-11-15 14:05:05 -08:00
Aaron Jheng
678ccdf716
element: mark as broken on darwin 2022-11-14 02:16:43 +00:00
Robert Scott
ea6d354b84
Merge pull request #201044 from fedeinthemix/update-xyce 
xyce: 7.4.0 -> 7.6.0
 2022-11-13 20:13:29 +00:00
Federico Beffa
d36e0be2ea xyce: 7.4.0 -> 7.6.0 2022-11-13 16:41:14 +01:00
Mario Rodas
16df31b2cd
Merge pull request #200755 from collares/lean-3.49.0 
lean: 3.48.0 -> 3.49.0
 2022-11-13 09:04:08 -05:00
Robert Schütz
61c207555b hal-hardware-analyzer: use igraph 0.9 2022-11-12 20:07:20 -08:00
yurket
8a236e246a gplates: fix failing build 
Started failing after the commit 11ea0e99b7 (Python 3.9->3.10 upgrade) with error:

    CMake Error at .../lib/cmake/Boost-1.75.0/BoostConfig.cmake:141 (find_package):
  Could not find a package configuration file provided by boost_python310

It appears that boost <= 1.78 fails to find Python with double digits in the minor version (like X.YZ)
 2022-11-12 11:33:42 -08:00
Lorenz Brun
c35b5503f4 dsview: 1.1.2 -> 1.2.1 2022-11-12 16:04:11 +01:00
Mauricio Collares
c87af38741 lean: 3.48.0 -> 3.49.0 2022-11-11 17:33:01 -03:00
R. Ryantm
139ba95570 cbmc: 5.69.1 -> 5.70.0 2022-11-11 18:08:36 +08:00
Weijia Wang
699e05b52a
root5: migrate to gsl (#200455) 2022-11-10 18:59:19 -05:00
7c6f434c
511bbd4c78
Merge pull request #200059 from r-ryantm/auto-update/clingo 
clingo: 5.6.1 -> 5.6.2
 2022-11-10 10:32:04 +00:00
Shamrock Lee
a664ec27f4 root: add package test test-thisroot 2022-11-10 09:27:35 +08:00
Shamrock Lee
7f91dec5dd root: wrap the executable and patch thisroot.* 2022-11-10 09:23:52 +08:00
Dmitry Kalinkin
25fd03cf72
Merge pull request #200412 from wegank/root-darwin 
root: 6.26.06 -> 6.26.08
 2022-11-09 18:16:38 -05:00
Weijia Wang
d474e39f7d root: fix build on aarch64-darwin 2022-11-09 21:03:59 +01:00
Weijia Wang
5d5c6ded1a root: 6.26.06 -> 6.26.08 2022-11-09 18:19:45 +01:00
Shamrock Lee
0106a68555
root: enable davix and ssl support (#200096) 
This enables CERN ROOT to open file urls with scheme
`davs://` and `https://`.

The inclusion of `openssl` in buildInputs
will increase neither closure size nor rebuild frequency,
since `python3`, which depends on `openssl`, is already a dependency.
 2022-11-09 11:31:37 -05:00
Fabian Affolter
95ed815b50
Merge pull request #200234 from r-ryantm/auto-update/delly 
delly: 1.1.5 -> 1.1.6
 2022-11-09 08:00:15 +01:00
Artturi
3e2445be79
Merge pull request #200145 from hzeller/20221107-update-surelog-uhdm-plugin 
Fix for darwin build.
 2022-11-09 02:09:35 +02:00
Weijia Wang
e0e6444e50 boinc: unbreak on aarch64-linux 2022-11-09 00:59:14 +01:00
Henner Zeller
50c509ecf3 surelog: 1.40 -> 1.45 
Update Surelog (going along with uhdm 1.45). Fix flaky tests
to to parallel execution of ctest by patching in a fix that is
already upstream.

Result zero hydra failures #199919

Also: using flatbuffers from nix environment instead of third_party/

Signed-off-by: Henner Zeller <h.zeller@acm.org>
 2022-11-08 12:47:27 -08:00
Henner Zeller
568398e338 uhdm: 0.9.1.40 -> 1.45 
Update UHDM and also fix for Darwin build.
The gtest version used in the project unconditionally uses
/tmp as temporary directory in Darwin and does not honor the
environment variables introduced in gtest 1.12.
Use that gtest version so that it will work in the Hydra
build environment.

Related: #199919 as this is fixing the Darwin build.

Signed-off-by: Henner Zeller <h.zeller@acm.org>
 2022-11-08 12:47:14 -08:00
R. Ryantm
c7ba9b459c delly: 1.1.5 -> 1.1.6 2022-11-08 18:21:37 +00:00
Fabian Affolter
9ac3253434
Merge pull request #200024 from fabaff/docker-bump 
python310Packages.docker: 6.0.0 -> 6.0.1
 2022-11-08 15:48:02 +01:00
Fabian Affolter
cad704eb95 toil: 5.6.0 -> 5.7.1 2022-11-08 12:17:40 +01:00
Mario Rodas
f84d890770
Merge pull request #199530 from NickCao/stellarium_11 
stellarium: 1.0 -> 1.1
 2022-11-08 03:15:29 -05:00
Justin Bedő
3a90ab68e6
Merge pull request #197631 from jbedo/octopus 
octopus-caller: backport patch to fix build
 2022-11-07 21:26:21 +00:00
Mauricio Collares
fc9eb96278
Merge pull request #198355 from collares/sage-libgap-aarch64 
sage: fix aarch64 crashes and skip problematic test
 2022-11-07 17:53:09 -03:00
R. Ryantm
f77d334af1 clingo: 5.6.1 -> 5.6.2 2022-11-07 17:55:20 +00:00
R. Ryantm
a8ed4be9a6 gmsh: 4.10.5 -> 4.11.0 2022-11-07 11:31:21 +00:00
amesgen
4a3fc076e4
clingcon: 5.0.0 -> 5.2.0 and fix build 2022-11-07 00:41:21 +01:00
Mario Rodas
5b06368259
Merge pull request #199623 from wegank/kicad-wxgtk 
kicad: migrate to wxGTK32
 2022-11-05 16:31:07 -05:00
Nick Cao
e562fc6e05
stellarium: build with qt6 2022-11-05 21:39:24 +08:00
Nick Cao
f2870ff9e2
calcmysky: build with qt6 2022-11-05 21:39:10 +08:00
Nick Cao
74fd5f0cba
stellarium: 1.0 -> 1.1 2022-11-05 21:37:59 +08:00
Nick Cao
b105efc145
calcmysky: 0.1.0 -> 0.2.1 2022-11-05 21:37:59 +08:00
markuskowa
e2cf8ac376
Merge pull request #199331 from markuskowa/fix-arpack 
arpack: fix ILP64 checks and MPI support
 2022-11-05 12:37:35 +01:00
Weijia Wang
0b894f5564 kicad: migrate to wxGTK32 2022-11-05 03:35:27 +01:00
Mauricio Collares
079200691f sage: patches to fix aarch64 crashes and skip known timeout 2022-11-04 16:09:51 -03:00
Valentin Gagarin
b02d74fb5e
Merge pull request #173225 from matthuszagh/uhdm 
Add systemverilog plugin to yosys
 2022-11-04 18:37:13 +01:00
Christian Kögler
759bbe2f57
Merge pull request #190900 from bzizou/seqkit 
seqkit: init at 2.3.1
 2022-11-04 16:48:40 +01:00
Sandro
8f679a5327
Merge pull request #194031 from NickCao/stellarium 2022-11-04 15:33:03 +01:00
7c6f434c
58f6230338
Merge pull request #192548 from collares/gap-4.12 
gap: 4.11.1 -> 4.12.1
 2022-11-04 08:01:40 +00:00
Bruno Bzeznik
9243a44c9c seqkit: init at 2.3.1 2022-11-04 08:51:32 +01:00
Markus Kowalewski
8c3d2bab83
calculix: add blas, lapack, arpack ILP64 checks 2022-11-03 12:59:44 +01:00
Markus Kowalewski
b931e2bb82
octopus: add arpack ILP64 check 2022-11-03 12:50:08 +01:00
Weijia Wang
7f0b7f4cf3 fityk: migrate to wxGTK32 2022-11-03 11:49:13 +01:00
markuskowa
c14386f1ed
Merge pull request #199025 from r-ryantm/auto-update/element 
element: 1.0.0 -> 1.0.1
 2022-11-02 21:46:19 +01:00
Austin Seipp
3afaf7d263 verilator: enable doCheck = true 
Based on the work from yangm2 in #109493.

Co-authored-by: yangm2 <yangm2@users.noreply.github.com>
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2022-11-02 07:55:30 -05:00
Austin Seipp
5ceadb26b8 verilator: 4.226 -> 5.002 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2022-11-02 07:55:30 -05:00
R. Ryantm
f75ed7fcef element: 1.0.0 -> 1.0.1 2022-11-01 18:43:56 +00:00
Stanisław Pitucha
9ed8ce7ff3
Merge pull request #198609 from natsukium/mmseqs2/init 
mmseqs2: init at 14-7e284
 2022-11-01 21:47:20 +11:00
Jan van Brügge
fa28ed4858
isabelle-linter: 2021-1 -> 2022-09-05 2022-10-31 20:06:03 +00:00
Jan van Brügge
f6b110fb50
isabelle: 2021-1 -> 2022 2022-10-31 20:06:00 +00:00
natsukium
ed7511ad02
mmseqs2: init at 14-7e284 2022-10-31 23:49:10 +09:00
Nikolay Korotkiy
015979436c
Merge pull request #198374 from jiegec/ngspice-darwin 
ngspice: add darwin to platforms
 2022-10-31 08:26:36 +03:00
Bobby Rong
fa6834cf70
Merge pull request #198648 from evils/kicad 
kicad: 6.0.8 -> 6.0.9
 2022-10-31 12:17:55 +08:00
Thiago Kenji Okada
2e7242bbb9
Merge pull request #188939 from luc65r/cemu-ti 
cemu-ti: 1.3 -> unstable-2022-06-29
 2022-10-31 00:36:24 +00:00
Thiago Kenji Okada
b2bb7c1348
cemu-ti: update license 2022-10-30 23:22:01 +00:00
Sandro
65d82645b9
Merge pull request #185507 from OPNA2608/update/d-compilers 2022-10-30 23:02:43 +01:00
Anderson Torres
eb7b3043ff
Merge pull request #195226 from mgttlinger/nusmv 
nusmv: init at 2.6.0
 2022-10-30 16:03:23 -03:00
Sandro
412b9917ce
Merge pull request #198064 from wegank/wxgtk31-drop-gtk2 2022-10-30 16:09:59 +01:00
Jiajie Chen
4941d433fa ngspice: add darwin to platforms 
ngspice can build and run on darwin.
 2022-10-30 22:19:08 +08:00
Evils
b2f1884dd8 kicad: 6.0.8 -> 6.0.9 2022-10-30 14:00:01 +01:00
markuskowa
89857e684f
Merge pull request #198463 from r-ryantm/auto-update/cbmc 
cbmc: 5.69.0 -> 5.69.1
 2022-10-29 23:23:02 +02:00
Samuel Ainsworth
b647155e5b
mujoco: init at 2.3.0 (#198145) 
* mujoco: init at 2.3.0

* mujoco: refactor `meta`

Co-authored-by: Florian <florian.brandes@posteo.de>

Co-authored-by: Florian <florian.brandes@posteo.de>
 2022-10-29 11:47:32 -07:00
R. Ryantm
4db4ddf01a cbmc: 5.69.0 -> 5.69.1 2022-10-29 13:42:50 +00:00
R. Ryantm
0ef660daa1 gnuastro: 0.18 -> 0.19 2022-10-29 05:17:40 +00:00
Mauricio Collares
41b59d27e4 sage: import gap update patch 2022-10-28 18:28:03 -03:00
Mauricio Collares
90eca1d362 gap: 4.11.1 -> 4.12.1 2022-10-28 18:20:03 -03:00
R. Ryantm
52b1e28293 cbmc: 5.68.0 -> 5.69.0 2022-10-28 16:23:12 +08:00
Weijia Wang
30d66019b4 wxGTK31: drop gtk2 support 2022-10-27 15:30:15 +02:00
R. Ryantm
11cca34608 qgroundcontrol: 4.2.3 -> 4.2.4 2022-10-27 21:19:31 +08:00
Jakub Dupak
57069c3366 QtRVSim: 0.9.3 -> 0.9.4 2022-10-27 13:27:37 +02:00
Jan van Brügge
269c1f5e90
naproche: 2022-04-19 -> 2022-10-24 2022-10-26 12:10:09 +01:00