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Commit Graph

8402 Commits

Author SHA1 Message Date
Juergen Fitschen
4c62088101 python311Packages.horizon-eda: init at 2.5.0 2023-10-19 01:03:34 +02:00
Juergen Fitschen
f203901b4f horizon-eda: clarify package license 
Source: https://github.com/horizon-eda/horizon/blob/v2.5.0/org.horizon_eda.HorizonEDA.metainfo.xml#L6
 2023-10-18 23:23:59 +02:00
scalavision
9fd3ea0f76 deeptools: 3.5.1 -> 3.5.4 2023-10-18 19:06:01 +02:00
github-actions[bot]
35eee590be
Merge master into staging-next 2023-10-18 00:02:17 +00:00
Weijia Wang
afc40db179
Merge pull request #260244 from r-ryantm/auto-update/kstars 
kstars: 3.6.6 -> 3.6.7
 2023-10-17 23:51:35 +02:00
github-actions[bot]
14b83b5e05
Merge master into staging-next 2023-10-17 18:01:04 +00:00
R. Ryantm
8450377782 nvc: 1.10.3 -> 1.10.4 2023-10-17 11:36:40 +00:00
Weijia Wang
773a8314ef geda: drop xorn 2023-10-17 10:20:21 +02:00
github-actions[bot]
c61915bc96
Merge master into staging-next 2023-10-17 06:01:22 +00:00
Weijia Wang
60fefd4cce
Merge pull request #261506 from wegank/tulip-bump 
tulip: 5.6.1 -> 5.7.2
 2023-10-17 07:48:54 +02:00
R. Ryantm
355e594816 raxml: 8.2.12 -> 8.2.13 2023-10-16 22:16:12 +00:00
Weijia Wang
9f628e292e tulip: 5.6.1 -> 5.7.2 2023-10-17 00:10:30 +02:00
Mauricio Collares
feff64db6e sage: import matplotlib 3.8 upgrade patch 2023-10-16 16:12:12 +02:00
Martin Weinelt
94c8c31bee
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
- pkgs/development/python-modules/numba/default.nix
 2023-10-15 22:31:34 +02:00
Henner Zeller
10e4eb07ad surelog: 1.73 -> 1.76 2023-10-15 09:30:13 -05:00
Henner Zeller
b2dad8840a uhdm: 1.74 -> 1.76 2023-10-15 09:30:13 -05:00
Weijia Wang
4a6dff8f83 drgeo: drop 2023-10-15 01:01:30 -03:00
github-actions[bot]
1d9483230a
Merge master into staging-next 2023-10-15 00:02:33 +00:00
Weijia Wang
64b7031b1b
Merge pull request #259657 from r-ryantm/auto-update/calc 
calc: 2.14.3.5 -> 2.15.0.1
 2023-10-15 01:52:26 +02:00
Weijia Wang
e39aad56c2 Merge branch 'master' into staging-next 2023-10-14 16:33:49 +02:00
R. Ryantm
d89c2af58a bowtie2: 2.5.1 -> 2.5.2 2023-10-14 10:06:32 +00:00
github-actions[bot]
8a68e0b5f5
Merge master into staging-next 2023-10-13 06:01:14 +00:00
Weijia Wang
7a15f4b3a7
Merge pull request #257390 from r-ryantm/auto-update/gwyddion 
gwyddion: 2.61 -> 2.63
 2023-10-13 02:05:13 +02:00
github-actions[bot]
58485aaddb
Merge master into staging-next 2023-10-13 00:02:24 +00:00
Weijia Wang
db5c152f0e
Merge pull request #260341 from r-ryantm/auto-update/marvin 
marvin: 23.4.0 -> 23.12.0
 2023-10-13 01:39:00 +02:00
Weijia Wang
bc0e786a54
marvin: sha256 -> hash 
Co-authored-by: Christina Sørensen <christina@cafkafk.com>
 2023-10-13 00:00:21 +02:00
github-actions[bot]
176015fc74
Merge master into staging-next 2023-10-12 18:01:06 +00:00
OTABI Tomoya
e8f331680d
Merge pull request #259418 from natsukium/blast-bin/update 
blast-bin: 2.13.0 -> 2.14.1
 2023-10-12 23:49:59 +09:00
Alyssa Ross
1bb67a90ba
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
	pkgs/development/python-modules/bambi/default.nix
	pkgs/development/python-modules/jaxopt/default.nix
 2023-10-12 09:08:12 +00:00
markuskowa
094ca95e01
Merge pull request #259737 from markuskowa/split-gromacs 
gromacs: use multiple outputs
 2023-10-12 09:45:50 +02:00
github-actions[bot]
0e9411554d
Merge master into staging-next 2023-10-11 12:01:09 +00:00
markuskowa
503a9f572d
Merge pull request #260254 from markuskowa/upd-nwchem 
nwchem: 7.2.0 -> 7.2.1
 2023-10-11 11:09:13 +02:00
R. Ryantm
6a927f93f1 marvin: 23.4.0 -> 23.12.0 2023-10-11 03:10:59 +00:00
Ben Darwin
935338d123 caffe: opencv3 -> opencv4 2023-10-10 17:31:32 -04:00
Ben Darwin
2a2ba3dc3f caffeWithCuda: mark broken 
> CMake Error at cuda_compile_1_generated_math_functions.cu.o.Release.cmake:280 (message):
>   Error generating file
>   /build/source/build/src/caffe/CMakeFiles/cuda_compile_1.dir/util/./cuda_compile_1_generated_math_functions.cu.o
 2023-10-10 17:31:32 -04:00
Ben Darwin
8969c706d2 mxnet: opencv3 -> opencv4 2023-10-10 17:31:32 -04:00
Fabián Heredia Montiel
d676e059d7 Merge remote-tracking branch 'origin/master' into staging-next 2023-10-10 15:07:12 -06:00
Bernardo Meurer
fd1b81464c
Merge pull request #258328 from Madouura/pr/rocm-update 2023-10-10 16:20:36 -04:00
Weijia Wang
69926af81f
Merge pull request #260203 from wegank/cryptoverif-bump 
cryptoverif: 2.05 -> 2.07
 2023-10-10 20:27:00 +02:00
github-actions[bot]
b1ae965cda
Merge master into staging-next 2023-10-10 18:00:56 +00:00
Weijia Wang
5a27d05b4b
Merge pull request #260233 from r-ryantm/auto-update/kissat 
kissat: 3.1.0 -> 3.1.1
 2023-10-10 18:42:52 +02:00
Markus Kowalewski
ceff926e7b nwchem: 7.2.0 -> 7.2.1 2023-10-10 18:12:57 +02:00
R. Ryantm
6f3c4aa963 kstars: 3.6.6 -> 3.6.7 2023-10-10 15:13:46 +00:00
R. Ryantm
bd39164038 kissat: 3.1.0 -> 3.1.1 2023-10-10 14:10:55 +00:00
Weijia Wang
4d34cbeece cntk: drop 2023-10-10 10:38:21 -03:00
Weijia Wang
2890949ab5 cryptoverif: 2.05 -> 2.07 2023-10-10 14:23:06 +02:00
github-actions[bot]
0efc5df650
Merge master into staging-next 2023-10-10 12:01:29 +00:00
Ryan Mulligan
98deb47f4f
Merge pull request #260039 from r-ryantm/auto-update/cadical 
cadical: 1.5.3 -> 1.8.0
 2023-10-10 04:18:42 -07:00
github-actions[bot]
06ee4dd693
Merge master into staging-next 2023-10-10 06:01:04 +00:00
R. Ryantm
cc7d88f247 gama: 2.25 -> 2.26 2023-10-10 03:25:45 +00:00
github-actions[bot]
6b95af2485
Merge master into staging-next 2023-10-10 00:02:12 +00:00
Et7f3
b0b04e6bff
calc: fix substituteInPlace call 
this code has moved in another file so we need to adapt our substituteInPlace
 2023-10-10 01:05:22 +02:00
Madoura
e6f88a9a82
rocm-related: fixup for ROCm 5.7.0 
blender: fixup for ROCm 5.7.0

opensycl: fixup for ROCm 5.7.0

magma: fixup for ROCm 5.7.0

torch: fixup for ROCm 5.7.0

cp2k: fixup for ROCm 5.7.0

sirius: fixup for ROCm 5.7.0

spfft: fixup for ROCm 5.7.0

spla: fixup for ROCm 5.7.0
 2023-10-09 17:03:19 -05:00
Guillaume Maudoux
07215db4cb
Merge pull request #259398 from whonore/update-dafny-4.3.0 2023-10-09 21:19:33 +02:00
R. Ryantm
f61509d8f3 cadical: 1.5.3 -> 1.8.0 2023-10-09 18:01:10 +00:00
github-actions[bot]
5903dfbe6d
Merge master into staging-next 2023-10-09 12:01:26 +00:00
markuskowa
b7129e447b
Merge pull request #258863 from sheepforce/cp2k 
cp2k: enable SIRIUS planewave code and optimisations
 2023-10-09 13:34:25 +02:00
Phillip Seeber
dcd7efd1f9 cp2k: enable GPU offloading, sirius planewaves and optimisations 2023-10-09 10:48:16 +02:00
Markus Kowalewski
e3638150f2 gromacs: split outputs 
fix patching of pkgconfig files
 2023-10-08 11:29:14 +02:00
Fabián Heredia Montiel
7f16b623fc Merge remote-tracking branch 'origin/master' into staging-next 2023-10-08 00:18:22 -06:00
R. Ryantm
703a27178b calc: 2.14.3.5 -> 2.15.0.1 2023-10-08 00:09:19 +00:00
Luflosi
ec38bafb02 abc-verifier: unstable-2023-06-28 -> unstable-2023-09-13 2023-10-07 11:52:04 -05:00
natsukium
d60c85fb75
blast-bin: add sourceProvenance to meta 2023-10-07 10:12:24 +09:00
Jan Tojnar
76a7aa445a Merge branch 'master' into staging-next 
Conflicts:
- pkgs/development/python-modules/xdot/default.nix
  between 2f244e3647 and 1a9a257cf7
 2023-10-06 23:18:00 +02:00
whonore
4b36cd01b3 dafny: 4.2.0 -> 4.3.0 2023-10-06 15:48:28 -04:00
natsukium
3dc0f1e7b7
blast-bin: 2.13.0 -> 2.14.1 
Changelog: https://www.ncbi.nlm.nih.gov/books/NBK131777/#_Blast_ReleaseNotes_BLAST_2_14_1_August_2_
 2023-10-07 01:59:18 +09:00
natsukium
96178c29a4
truvari: 4.0.0 -> 4.1.0 
Diff: https://github.com/ACEnglish/truvari/compare/v4.0.0...v4.1.0

Changelog: https://github.com/ACEnglish/truvari/releases/tag/v4.1.0
 2023-10-07 01:30:27 +09:00
natsukium
776b2694a3
truvari: add meta.changelog 2023-10-07 01:30:27 +09:00
Justin Bedo
e347cca9f8
delly: 1.1.6 -> 1.1.7 
Diff: https://github.com/dellytools/delly/compare/v1.1.6...1.1.7
 2023-10-06 14:12:05 +11:00
Artturi
67922fecef
Merge pull request #259253 from Artturin/pyfixes1 2023-10-06 04:54:03 +03:00
Artturin
58deb9e37a apbs: fix py311 build 
c2e5af22c9/tools/manip/inputgen.py (L314)
 2023-10-06 03:45:57 +03:00
github-actions[bot]
5f7be31bec
Merge master into staging-next 2023-10-06 00:02:31 +00:00
Phillip Seeber
fe9344689d wxmacmolplt: fix linking 2023-10-05 18:09:35 +02:00
Vladimír Čunát
fa7835846a
Merge branch 'master' into staging-next 2023-10-04 22:40:54 +02:00
Nick Cao
caf7f31b75
Merge pull request #258910 from r-ryantm/auto-update/cryptominisat 
cryptominisat: 5.11.12 -> 5.11.14
 2023-10-04 10:03:38 -04:00
github-actions[bot]
c7a3c2d71b
Merge master into staging-next 2023-10-04 12:01:01 +00:00
Doron Behar
d478d2c6b6
Merge pull request #258811 from Enzime/qalculate-bundle 
qalculate-gtk: generate bundle on macOS
 2023-10-04 10:17:45 +03:00
R. Ryantm
2a57ec40ed cryptominisat: 5.11.12 -> 5.11.14 2023-10-04 02:13:39 +00:00
Martin Weinelt
e29e5077fc
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
- pkgs/development/python-modules/podcastparser/default.nix
 2023-10-03 21:13:27 +02:00
Michael Hoang
a03367cae4 qalculate-gtk: generate bundle on macOS 2023-10-03 15:08:27 +01:00
Markus Kowalewski
425afd6755 openmolcas: use getDev to pickup libxc includes 
fix for split output of libxc ef2d57ee1c
 2023-10-03 13:56:57 +02:00
Doron Behar
a7da38888f
Merge pull request #257652 from doronbehar/pkg/lammps 
lammps: 23Jun2022_update4 -> 2Aug2023_update1
 2023-10-03 13:14:14 +03:00
github-actions[bot]
23a7292114
Merge master into staging-next 2023-10-02 18:01:04 +00:00
markuskowa
dcf2055eaf
Merge pull request #258211 from markuskowa/fix-nwchem 
nwchem: remove test jobs from output
 2023-10-02 17:29:27 +02:00
markuskowa
ccdb27584c
Merge pull request #258190 from markuskowa/fix-cp2k 
c2pk: remove unit tests from output
 2023-10-02 17:28:08 +02:00
Weijia Wang
ccdb43a66a Merge branch 'master' into staging-next 2023-10-02 14:49:01 +02:00
Markus Kowalewski
1d953af53e cp2k: fix libxc includes (use getDev) 2023-10-02 11:09:20 +02:00
Mauricio Collares
d4aaa0447a
Merge pull request #258501 from r-ryantm/auto-update/jmol 
jmol: 16.1.39 -> 16.1.41
 2023-10-02 09:20:43 +02:00
Fabián Heredia Montiel
72b10ff62f
Merge pull request #258278 from markuskowa/split-libxsmm 
libxsmm: split outputs -> out, dev, doc
 2023-10-01 22:53:43 -06:00
R. Ryantm
51ef74c648 jmol: 16.1.39 -> 16.1.41 2023-10-02 00:01:49 +00:00
github-actions[bot]
99d3e271f5
Merge master into staging-next 2023-10-01 06:01:03 +00:00
Weijia Wang
0396d3b0fb
Merge pull request #258254 from r-ryantm/auto-update/nest-mpi 
nest-mpi: 3.5 -> 3.6
 2023-10-01 03:53:05 +02:00
Weijia Wang
d2f79d7443
Merge pull request #257369 from r-ryantm/auto-update/stacks 
stacks: 2.62 -> 2.65
 2023-10-01 03:20:19 +02:00
Weijia Wang
0eb4c474a0 Merge branch 'master' into staging-next 2023-10-01 03:08:16 +02:00
Weijia Wang
293062bbdb stacks: set platforms 2023-10-01 02:26:34 +02:00
Weijia Wang
00d57438ab
Merge pull request #256805 from r-ryantm/auto-update/neuron-mpi 
neuron-mpi: 8.2.2 -> 8.2.3
 2023-10-01 00:44:58 +02:00
Weijia Wang
0b2e425b68
Merge pull request #256750 from r-ryantm/auto-update/ginac 
ginac: 1.8.6 -> 1.8.7
 2023-10-01 00:40:22 +02:00
Weijia Wang
991ea4b415
Merge pull request #258269 from wegank/siril-bump 
siril: 1.0.6 -> 1.2.0
 2023-10-01 00:16:35 +02:00
Markus Kowalewski
dad3ce4398 cp2k: fix libxsmm includes (use getDev) 2023-09-30 23:28:31 +02:00
Weijia Wang
032719d0c5 siril: 1.0.6 -> 1.2.0 2023-09-30 23:18:47 +02:00