nordic-dev.net/nixpkgs
nordic-dev.net/nixpkgs
2
0
Fork 0
mirror of https://github.com/NixOS/nixpkgs.git synced 2024-12-11 16:23:26 +00:00
Code Issues Packages Projects Releases Wiki Activity
496,617 Commits 191 Branches 125 Tags 8.5 GiB
6884e85326
Commit Graph

1004 Commits

Author SHA1 Message Date
Mario Rodas
2bd4a56ee1
Merge pull request #237950 from bcdarwin/bppsuite-fix-homepage 
bppsuite: fix homepage
 2023-06-16 18:28:27 -05:00
Ben Darwin
9120f78e06 bppsuite: fix homepage 
Old homepage is down, so point to GitHub instead.
 2023-06-15 12:18:11 -04:00
natsukium
7b36afffd6
kalign: init at 3.3.5 2023-06-14 21:05:58 +09:00
natsukium
3d1b9f0819 macs2: rename from MACS2 2023-06-13 21:47:47 +00:00
natsukium
12cab182ae MACS2: 2.2.7.1 -> 2.2.8 
Diff: https://github.com/macs3-project/MACS/compare/v2.2.7.1...v2.2.8
changelog: https://github.com/macs3-project/MACS/releases/tag/v2.2.8
 2023-06-13 21:47:47 +00:00
natsukium
597e4e8652
aragorn: fix format 
- use finalAttrs instead of rec
- add runHook
 2023-06-08 18:42:29 +09:00
natsukium
bb317093e8
aragorn: 1.2.38 -> 1.2.41 
- change the source and homepage
- change the license
 2023-06-08 18:42:24 +09:00
Weijia Wang
bff97d5215
Merge pull request #235727 from r-ryantm/auto-update/diamond 
diamond: 2.1.6 -> 2.1.7
 2023-06-04 19:10:45 +02:00
R. Ryantm
1f231abe57 fastp: 0.23.3 -> 0.23.4 2023-06-04 03:21:21 +00:00
R. Ryantm
33d8777af9 diamond: 2.1.6 -> 2.1.7 2023-06-03 08:46:43 +00:00
R. Ryantm
7c4e31bb4c igv: 2.16.0 -> 2.16.1 2023-05-31 13:33:15 +00:00
R. Ryantm
71a23afb45 iqtree: 2.2.2.4 -> 2.2.2.6 2023-05-30 01:13:17 +00:00
R. Ryantm
bebbc418d4 seqtk: 1.3 -> 1.4 2023-05-28 06:48:51 +00:00
R. Ryantm
216e1726da blast: 2.13.0 -> 2.14.0 2023-05-26 00:23:49 +00:00
figsoda
8014b08ee0 treewide/applications: use top-level fetchPypi 2023-05-25 10:51:30 -04:00
Weijia Wang
6d71b5d6de iqtree: set platforms 2023-05-22 11:14:57 +03:00
R. Ryantm
b36979ec74 iqtree: 2.2.0.4 -> 2.2.2.4 2023-05-22 04:48:16 +00:00
Weijia Wang
7c6ca2791b
Merge pull request #231635 from natsukium/bwa/build-on-aarch64 
bwa: 0.7.17 -> unstable-2022-09-23
 2023-05-18 01:10:14 +03:00
Nick Cao
906c7dd78c
Merge pull request #231975 from jbedo/fastp 
fastp: 0.23.2 -> 0.23.3
 2023-05-15 05:11:28 -06:00
natsukium
04dd7f41e7
bwa: add runHook 2023-05-15 16:13:49 +09:00
natsukium
c85dced23e
bwa: update license 2023-05-15 16:13:49 +09:00
natsukium
01ddcaa879
bwa: 0.7.17 -> unstable-2022-09-23 
Diff: https://github.com/lh3/bwa/compare/v0.7.17...139f68fc4c3747813783a488aef2adc86626b01b
 2023-05-15 16:13:45 +09:00
Ryan Lahfa
308ee09f2f
Merge pull request #231598 from natsukium/truvari/disable-tests-darwin 
truvari: disable some tests on darwin
 2023-05-15 09:09:09 +02:00
Justin Bedo
60c69da248
fastp: 0.23.2 -> 0.23.3 2023-05-15 15:03:24 +10:00
natsukium
7edb72db10
truvari: add patches to fix truvari anno 2023-05-15 10:01:38 +09:00
Ben Booth
fed8eeba5c jbrowse: init at 2.5.0 2023-05-12 11:24:26 -07:00
Justin Bedo
c7a6773f8e
subread: 2.0.5 -> 2.0.6 2023-05-10 22:30:35 +10:00
Alexis Praga
e027a5d836 kent: package headers too. 
This is needed for perlPackages.BioBigFile.
Removing NIX_BUILD_TOP.
 2023-05-06 19:48:14 +02:00
R. Ryantm
be4b60bf4f minimap2: 2.25 -> 2.26 2023-05-03 19:38:48 +00:00
Ben Darwin
cf573698b1 ants: 2.4.3 -> 2.4.4 2023-05-02 12:29:21 -04:00
R. Ryantm
54a5899734 minimap2: 2.24 -> 2.25 2023-04-29 21:45:58 +00:00
R. Ryantm
395db2896e bedtools: 2.30.0 -> 2.31.0 2023-04-29 03:05:55 +00:00
natsukium
8d40a0ecaa
bedops: fix build on darwin 2023-04-24 22:11:47 +09:00
Nick Cao
ab7c128e3c
Merge pull request #227207 from natsukium/kent/update 
kent: 404 -> 446
 2023-04-24 10:03:16 +08:00
Sandro
9bc9cfe51d
Merge pull request #222660 from natsukium/hh-suite/init 2023-04-23 23:42:38 +02:00
Nick Cao
99c4e7b895
Merge pull request #227170 from jbedo/subread 
subread: 2.0.4 -> 2.0.5
 2023-04-22 11:05:37 +08:00
Robert Schütz
2362848adf truvari: add natsukium to maintainers 2023-04-21 13:43:26 -07:00
Robert Schütz
ea468d9691 truvari: 2.1.1 -> 4.0.0 
Diff: https://github.com/spiralgenetics/truvari/compare/v2.1.1...v4.0.0
 2023-04-21 13:43:26 -07:00
natsukium
23205d28d2
kent: add missing information to the meta 2023-04-20 16:06:09 +09:00
natsukium
5b62152599
kent: add runHooks 2023-04-20 16:06:08 +09:00
natsukium
1e68ff3ee9
kent: 404 -> 446 
https://github.com/ucscGenomeBrowser/kent/compare/v404_base...v446_base
 2023-04-20 16:05:44 +09:00
Justin Bedo
718170ed41
subread: 2.0.4 -> 2.0.5 2023-04-20 10:25:20 +10:00
natsukium
e201b1556f
tandem-aligner: add changelog to meta 2023-04-19 21:23:21 +09:00
natsukium
14d7a73714
tandem-aligner: unstable-2022-09-17 -> 0.1 
https://github.com/seryrzu/tandem_aligner/releases/tag/v0.1
 2023-04-19 21:22:18 +09:00
natsukium
a272606614
hh-suite: init at 3.3.0 2023-04-19 10:32:35 +09:00
Artturi
9a1f5d4248
Merge pull request #226889 from Artturin/fixlints2 2023-04-18 21:52:21 +03:00
Artturin
eac28f38d6 treewide: fix lints 
Arg to lib.optional is a list

build time tool in buildInputs

*Flags not a list

https://github.com/nix-community/nixpkgs-lint
 2023-04-18 20:20:56 +03:00
Sandro
555daa9d33
Merge pull request #221957 from natsukium/dssp/update 
dssp: 4.0.5 -> 4.2.2.1
 2023-04-18 16:34:17 +02:00
natsukium
62943901dd
dssp: 4.0.5 -> 4.2.2.1 
https://github.com/PDB-REDO/dssp/compare/v4.0.5...v4.2.2.1
 2023-04-14 11:35:48 +09:00
Nick Cao
2833fc3981
Merge pull request #225841 from natsukium/mafft/update 
mafft: 7.515 -> 7.520
 2023-04-13 09:15:12 +08:00