Sandro Jäckel
653837881e
treewide: replace lib/${python.libPrefix}/site-packages with its shorthand ${python.sitePackages}
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which should be always preferred
2024-01-30 19:56:57 +01:00
R. RyanTM
ec66ff787e
snakemake: 8.2.1 -> 8.3.2 ( #284218 )
2024-01-27 09:26:23 -05:00
Maximilian Bosch
a13451fa58
Merge pull request #283816 from trofi/whisper-gcc-13-fix
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whisper: fix `gcc-13` build failure
2024-01-26 23:11:50 +01:00
Pierre Roux
4ce414bbe4
coq: 8.19+rc1 -> 8.19.0
2024-01-26 19:35:30 +01:00
R. Ryantm
f61c011407
ants: 2.5.0 -> 2.5.1
2024-01-26 01:12:12 +01:00
Sergei Trofimovich
4508debde5
whisper: enable parallel building
2024-01-25 19:27:12 +00:00
Sergei Trofimovich
cbd45bf5a3
whisper: fix gcc-13 build failure
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Without the change build fails on `master` against `gcc-13` as
https://hydra.nixos.org/build/246505636 :
mapper/../common/defs.h:53:9: error: 'uint32_t' does not name a type
53 | typedef uint32_t ref_pos_t;
| ^~~~~~~~
mapper/../common/defs.h:35:1: note: 'uint32_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
34 | #include <string>
+++ |+#include <cstdint>
2024-01-25 19:24:52 +00:00
Mauricio Collares
a3c9b3b678
sage: import scipy 1.12 upgrade patch
2024-01-25 19:06:47 +01:00
github-actions[bot]
8c2ba7797a
Merge master into staging-next
2024-01-25 12:01:19 +00:00
Weijia Wang
4fddc9be4e
Merge pull request #283674 from r-ryantm/auto-update/marvin
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marvin: 23.12.0 -> 23.17.0
2024-01-25 10:07:51 +01:00
Vladimír Čunát
24db4fbcb8
octopus: fixup build by adding which
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https://hydra.nixos.org/build/247364187/nixlog/1/tail
2024-01-25 09:12:08 +01:00
Weijia Wang
5c4784cd2f
marvin: pin openjdk17
2024-01-25 08:59:41 +01:00
R. Ryantm
8deb9a0679
marvin: 23.12.0 -> 23.17.0
2024-01-25 05:45:33 +00:00
Weijia Wang
826606889e
Merge pull request #264092 from muscaln/fritzing
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fritzing: unstable-2022-07-01 -> 1.0.1
2024-01-25 05:57:12 +01:00
Mustafa Çalışkan
cdb0810651
fritzing: unstable-2022-07-01 -> 1.0.1
2024-01-25 04:27:37 +01:00
Mauricio Collares
31787848d1
Merge pull request #283288 from r-ryantm/auto-update/jmol
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jmol: 16.1.47 -> 16.1.49
2024-01-24 20:51:02 +01:00
Mauricio Collares
435535d968
Merge pull request #283322 from collares/sage-10.2
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sage: 10.0 -> 10.2
2024-01-24 18:26:47 +01:00
R. Ryantm
fbc1452b83
nnpdf: 4.0.7 -> 4.0.8
2024-01-24 12:00:37 -05:00
Nick Cao
4a7d1eb86e
Merge pull request #283425 from r-ryantm/auto-update/stacks
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stacks: 2.65 -> 2.66
2024-01-24 10:08:34 -05:00
Mauricio Collares
d37074d8b4
sage, sageWithDoc: 10.0 -> 10.2
2024-01-24 15:26:55 +01:00
R. Ryantm
bae468a718
igv: 2.17.0 -> 2.17.1
2024-01-24 08:42:17 +00:00
R. Ryantm
6d5b82a080
stacks: 2.65 -> 2.66
2024-01-24 07:54:36 +00:00
R. Ryantm
e30623ef16
jmol: 16.1.47 -> 16.1.49
2024-01-23 18:41:36 +00:00
Weijia Wang
8007117f79
Merge pull request #282666 from wegank/ebtks-refactor
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ebtks: fix build on darwin, refactor
2024-01-23 18:23:42 +01:00
Nick Cao
2ec555b4cb
Merge pull request #282959 from TomaSajt/simulide
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simulide_1_1_0: use corrected upstream source
2024-01-22 16:57:57 -05:00
TomaSajt
62204e05fa
simulide_1_1_0: use corrected upstream source
2024-01-22 18:49:22 +01:00
Nick Cao
2a5f24096d
Merge pull request #282916 from r-ryantm/auto-update/eigenmath
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eigenmath: unstable-2023-12-31 -> unstable-2024-01-22
2024-01-22 11:21:18 -05:00
markuskowa
e6e941f341
Merge pull request #282890 from sheepforce/molcas-fix
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openmolcas: fix pyparsing >= 3.11 compatibility
2024-01-22 15:54:31 +01:00
R. Ryantm
11e3813729
eigenmath: unstable-2023-12-31 -> unstable-2024-01-22
2024-01-22 14:34:43 +00:00
Phillip Seeber
9ad625fdfa
openmolcas: fix pyparsing >= 3.11 compatibility
2024-01-22 15:09:57 +01:00
Mario Rodas
1e9b4f7f65
Merge pull request #282489 from r-ryantm/auto-update/nanovna-saver
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nanovna-saver: 0.6.0 -> 0.6.3
2024-01-22 06:59:25 -05:00
Fabian Affolter
8639095604
Merge pull request #282534 from fabaff/cwltool-fix
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cwltool: 3.1.20230213100550 -> 3.1.20240112164112
2024-01-21 23:46:45 +01:00
Weijia Wang
54f104a929
inormalize: fix build on darwin
2024-01-21 23:26:55 +01:00
Weijia Wang
07ae660f55
n3: fix build on darwin
2024-01-21 23:22:54 +01:00
Weijia Wang
abb97f6022
ebtks: migrate to by-name, rename from EBTKS
2024-01-21 19:37:48 +01:00
Gaetan Lepage
a9f8122a9e
mujoco: 3.1.0 -> 3.1.1
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Changelog: https://github.com/google-deepmind/mujoco/releases/tag/3.1.1
2024-01-21 12:24:04 +01:00
Fabian Affolter
48433b4d36
cwltool: 3.1.20230213100550 -> 3.1.20240112164112
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Diff: https://github.com/common-workflow-language/cwltool/compare/refs/tags/3.1.20230213100550...3.1.20240112164112
Changelog: https://github.com/common-workflow-language/cwltool/releases/tag/3.1.20240112164112
2024-01-21 10:32:48 +01:00
R. Ryantm
b9d0190c54
nanovna-saver: 0.6.0 -> 0.6.3
2024-01-21 05:17:49 +00:00
superherointj
41ad0e477d
SPAdes: fix build
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Fixes #282372
Co-authored-by: @wegank
2024-01-20 15:28:48 -03:00
Weijia Wang
c79898ec62
Merge pull request #278851 from r-ryantm/auto-update/gwyddion
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gwyddion: 2.64 -> 2.65
2024-01-20 10:35:52 +01:00
Weijia Wang
459b3a911e
Merge pull request #279875 from r-ryantm/auto-update/magic-vlsi
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magic-vlsi: 8.3.454 -> 8.3.456
2024-01-20 05:34:55 +01:00
Phillip Seeber
d17de8a1f1
molden: disable parallel building
2024-01-19 17:17:06 +01:00
Nick Cao
c60431f4df
Merge pull request #281649 from TomaSajt/simulide
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simulide: add generic builder for other versions
2024-01-18 13:12:40 -05:00
TomaSajt
bf4060fe24
simulide_1_1_0: init at 1.1.0-RC1
2024-01-18 17:42:58 +01:00
TomaSajt
28790f71ab
simulide_1_0_0: init at 1.0.0-SR2, set simulide alias to simulide_1_0_0
2024-01-18 17:40:22 +01:00
TomaSajt
29ca5691cf
simulide: add generic builder, set simulide alias to simulide_0_4_15
2024-01-18 17:36:31 +01:00
kirillrdy
ff0b012df7
Merge pull request #280332 from NixOS/pr/snakemake_8_1_1
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snakemake: 8.0.1 -> 8.2.1
2024-01-18 21:19:00 +09:00
R. Ryantm
ba3295cbef
easycrypt: 2023.09 -> 2024.01
2024-01-18 08:47:12 +01:00
Dmitry Kalinkin
346cb05310
snakemake: 8.0.1 -> 8.2.1
2024-01-17 16:28:55 -05:00
Carlos Craveiro
4745b5edf3
simulide: init at 0.4.15-SR10
2024-01-17 01:37:40 -03:00
