316 Commits

Author	SHA1	Message	Date
Peter Simons	c9e1380626	r-nloptr: fix build by adding pkgconfig	2018-11-02 17:50:18 +01:00
Peter Simons	9b63cc6313	r-rlang: patch shebang in configure script to fix the build	2018-11-02 17:50:18 +01:00
Tom McLaughlin	cac5c9401e	R: update CRAN and BIOC package sets ... Closes https://github.com/NixOS/nixpkgs/pull/49430.	2018-11-02 17:50:18 +01:00
Rob Vermaas	3f719b0fad	Fix build for rPackages.units ... (cherry picked from commit 1eb1fec3ae)	2018-10-08 12:53:43 +02:00
ivanbrennan	989f24befc	git2r: add SSH support ... When building the devtools R module, which depends on git2r, it reports that libssh2 cannot be found, and falls back to building without SSH support. Adding libssh2.dev to git2r's native build inputs fixes this.	2018-09-11 16:39:20 -04:00
Ryan Mulligan	73ae8e53e2	rPackages.RPostgres: fix configure paths and includes ... closes #46208	2018-09-09 14:37:28 -07:00
Mitsuhiro Nakamura	5e42a081a3	r-jqr: fix build (#45333)	2018-08-20 00:08:28 +02:00
volth	e6d3c65442	r-packages: fix regression	2018-08-04 06:19:08 +00:00
Mitsuhiro Nakamura	559997179d	rPackages: export buildRPackage	2018-08-03 01:08:07 +09:00
volth	52f53c69ce	pkgs/*: remove unreferenced function arguments	2018-07-21 02:48:04 +00:00
Markus Ankenbrand	775fd4bfba	rPackages.haven: fix installation	2018-07-12 11:07:27 +02:00
Mitsuhiro Nakamura	c072024409	rPackages.reprex: fix build	2018-07-11 23:16:49 +09:00
Markus Ankenbrand	89f44c1314	rPackages.rhdf5: fix installation ... Fix #43285	2018-07-10 16:38:11 +02:00
Peter Simons	03476783a5	R: fix evaluation errors	2018-07-07 12:10:46 +02:00
Markus Ankenbrand	9eeea0b9ef	rPackages.rhdf5: fix installation ... Fix #42878	2018-07-02 18:51:18 +02:00
Daiderd Jordan	654960c1cd	Merge pull request #42290 from mnacamura/r-igraph-darwin ... rPackages.igraph: fix Darwin build	2018-06-20 19:52:36 +02:00
Mitsuhiro Nakamura	f972a30f16	rPackages.igraph: fix Darwin build	2018-06-20 11:08:29 +09:00
Mitsuhiro Nakamura	dada18527a	rPackages.RcppEigen: fix Darwin build	2018-06-20 10:59:18 +09:00
Josef Kemetmüller	aeda45821d	rPackages.mgcv: fix darwin build ... This fixes the error: ld: library not found for -liconv	2018-06-07 00:00:42 +02:00
Josef Kemetmüller	0275562a12	rPackages.Matrix: fix darwin build ... This fixes the error: ld: library not found for -liconv	2018-06-07 00:00:07 +02:00
Josef Kemetmüller	d8ad2ad916	rPackages.nlme: fix darwin build ... This fixes the error: ld: library not found for -liconv	2018-06-06 23:59:09 +02:00
Josef Kemetmüller	e023f117f8	rPackages.KernSmooth: fix darwin build ... This fixes the error: ld: library not found for -liconv	2018-06-06 23:58:46 +02:00
Josef Kemetmüller	5d092b3052	rPackages.cluster: fix darwin build ... This fixes the error: ld: library not found for -liconv	2018-06-06 23:57:08 +02:00
Mitsuhiro Nakamura	89a5e6db55	rPackages.JuniperKernel: fix non-Darwin build	2018-05-15 17:50:11 +09:00
Mitsuhiro Nakamura	d35604d910	rPackages: fix binutils path on Darwin	2018-05-12 20:51:43 +09:00
Peter Simons	94295e3cee	R: update CRAN and BIOC package sets	2018-04-24 09:19:38 +02:00
Peter Simons	9c207cd922	R: fix evaluation errors	2018-03-15 21:14:29 +01:00
Averell Dalton	028e67abce	rPackages.mongolite: fix build	2018-03-10 04:01:49 +01:00
Vladimír Čunát	565bd805e6	Merge branch 'master'	2018-03-05 14:53:27 +01:00
Peter Simons	a06b81b8ad	Merge pull request #35651 from mnacamura/r-xml2-darwin ... rPackages.xml2: fix darwin build	2018-02-26 20:16:16 +01:00
Mitsuhiro Nakamura	4b1627d313	rPackages.xml2: fix darwin build	2018-02-26 10:47:57 +09:00
Mitsuhiro Nakamura	671e3f5c4d	rPackages.JuniperKernel: fix darwin build	2018-02-26 10:00:00 +09:00
Alexander V. Nikolaev	0acec7e984	treewide: transition mesa to libGLU_combined	2018-02-24 17:06:49 +02:00
Justin Bedo	8d03d9b9af	rPackages: add bioconductor archive url	2018-02-21 09:58:17 +11:00
Justin Bedo	cfc07bcf0e	bioconductor: 3.4 -> 3.6	2018-02-21 09:58:17 +11:00
Mitsuhiro Nakamura	c4658ac0a4	rPackages.pbdZMQ: fix package loading on Darwin	2018-02-10 00:54:28 +09:00
Mitsuhiro Nakamura	2533720976	rPackages.data_table: OpenMP support on Darwin	2018-01-19 19:30:55 +09:00
Daiderd Jordan	5a02143c20	Merge pull request #33010 from LnL7/cacert-hook ... cacert: add hook that sets SSL_CERT_FILE	2018-01-07 09:55:15 +01:00
Robin Gloster	ee1c85aee9	mariadb: lib -> connector-c	2017-12-29 02:18:35 +01:00
Daiderd Jordan	091c2b9f04	cacert: cleanup exporting SSL_CERT_FILE	2017-12-27 21:36:32 +01:00
Peter Simons	65b15c40f1	R: update package set	2017-12-01 13:48:26 +01:00
Peter Simons	458331408e	r-openssl: fix build	2017-11-30 18:45:47 +01:00
Matthew Justin Bauer	24e38f3075	r-modules: fix eval ... Fixes #31508	2017-11-12 21:49:41 -06:00
Hamish Mackenzie	8870d1a67d	r-modules: Fix a number of popular R packages ... The R V8 package still depends on V8 3.14 so this is also included.	2017-10-21 11:29:21 +01:00
Mitsuhiro Nakamura	c5fe03ace2	r-pbdZMQ: fix Darwin install	2017-07-14 14:32:51 +09:00
Peter Simons	b1ebe7a72c	r-modules: update package set	2017-07-02 09:51:42 +02:00
Peter Simons	85a9e6dcdf	R: update list of broken packages (and some cosmetic)	2017-04-24 15:39:54 +02:00
Peter Simons	430cbcfd2b	R: update CRAN and BIOC package sets	2017-04-24 15:39:08 +02:00
Chris Hodapp	80beb55cfc	imager (r-modules): add pkgs.x11 to fix build, unmark imager/ForestTools as broken	2017-04-20 14:18:01 -04:00
Peter Simons	add394d8f1	r-modules: update CRAN package set	2017-03-07 14:56:46 +01:00
Peter Simons	f4595fa555	r-modules: drop broken irkernel package set ... We can no longer update that package set since, apparently, it has moved to a different packaging scheme.	2017-03-07 14:56:46 +01:00
Peter Simons	3dc4e12ff0	r-modules: remove weird version assertion	2017-03-07 14:56:46 +01:00
Nikolay Amiantov	6f3e071755	rPackages: try to unbreak reverse dependencies of cudatoolkit	2017-02-28 17:22:06 +03:00
Domen Kožar	4ccb553b70	Merge pull request #22817 from jbedo/r ... R: 3.2.4 -> 3.3.2	2017-02-27 14:02:13 +01:00
Domen Kožar	7ed28a0b78	R: fix bio3d build	2017-02-27 13:51:55 +01:00
Justin Bedo	4c2d75f58c	R: unmark edgeR and limma as broken	2017-02-24 15:52:10 +11:00
Justin Bedo	4bb8727284	R: 3.2.4 -> 3.3.2	2017-02-24 15:22:12 +11:00
mimadrid	8954412fcc	r-modules: fix snpStats package	2017-01-06 21:07:25 +01:00
mimadrid	b5a0925663	r-modules: fix VariantAnnotation package	2017-01-06 21:07:25 +01:00
mimadrid	6540b6507d	r-modules: fix rtracklayer package	2017-01-06 21:07:25 +01:00
mimadrid	baf65d5000	r-modules: fix Rsubread package	2017-01-06 21:07:25 +01:00
mimadrid	9ebab25442	r-modules: fix gmapR package	2017-01-06 21:07:25 +01:00
mimadrid	286e86f3a5	r-modules: fix oligo package	2017-01-06 21:07:25 +01:00
mimadrid	afd1a4c933	r-modules: fix affyio package	2017-01-06 21:07:25 +01:00
mimadrid	4c0c3c7493	r-modules: fix BitSeq package	2017-01-06 21:07:24 +01:00
mimadrid	272b447ea7	r-modules: fix bamsignals package	2017-01-06 21:07:24 +01:00
mimadrid	c5e4754ca7	r-modules: fix affyPLM package	2017-01-06 21:07:24 +01:00
mimadrid	1d7fd8f3c4	r-modules: fix xml2 package	2017-01-06 21:07:24 +01:00
mimadrid	5b813c2ab0	r-modules: fix XBRL package	2017-01-06 21:07:24 +01:00
mimadrid	512be9e14a	r-modules: fix WhopGenome package	2017-01-06 21:07:24 +01:00
mimadrid	f9d84f8b65	r-modules: fix tkrplot package	2017-01-06 21:07:24 +01:00
mimadrid	0b3e62bb12	r-modules: fix tiff package	2017-01-06 21:07:23 +01:00
mimadrid	9420fa23c6	r-modules: fix TAQMNGR package	2017-01-06 21:07:23 +01:00
mimadrid	2303e63116	r-modules: fix spate package	2017-01-06 21:07:23 +01:00
mimadrid	fcbed4b654	r-modules: fix showtext package	2017-01-06 21:07:23 +01:00
mimadrid	8a6b58d51d	r-modules: fix seqminer package	2017-01-06 21:07:23 +01:00
mimadrid	e1a5eeef06	r-modules: fix seqinr package	2017-01-06 21:07:22 +01:00
mimadrid	1ef67b9e78	r-modules: fix RVowpalWabbit package	2017-01-06 21:05:54 +01:00
mimadrid	ae2723a144	r-modules: fix rtiff package	2017-01-06 21:05:54 +01:00
mimadrid	d7ac90dd0c	r-modules: fix rtfbs package	2017-01-06 21:05:53 +01:00
mimadrid	fd175e4084	r-modules: fix Rssa package	2017-01-06 21:05:52 +01:00
mimadrid	bd2aaada6e	r-modules: fix RSclient package	2017-01-06 21:05:52 +01:00
mimadrid	53235dbe14	r-modules: fix rphast package	2017-01-06 21:05:52 +01:00
mimadrid	780fb79e32	r-modules: fix Rmpfr package	2017-01-06 21:05:51 +01:00
mimadrid	a58db75ccb	r-modules: fix rmatio package	2017-01-06 21:05:51 +01:00
mimadrid	674a2077dd	r-modules: fix rJava package	2017-01-06 21:05:51 +01:00
mimadrid	13a582688f	r-modules: fix RJaCGH package	2017-01-06 21:05:51 +01:00
mimadrid	9922867fa8	r-modules: fix Rhtslib package	2017-01-06 21:05:50 +01:00
mimadrid	bb60f939ae	r-modules: fix Rhpc package	2017-01-06 21:05:50 +01:00
mimadrid	e1bc505da9	r-modules: fix rggobi package	2017-01-06 21:05:50 +01:00
mimadrid	9f2b5e0425	r-modules: fix RGtk2 package	2017-01-06 21:05:50 +01:00
mimadrid	3342f8bd59	r-modules: fix RcppOctave package	2017-01-06 21:05:50 +01:00
mimadrid	ba86a39645	r-modules: fix RcppCNPy package	2017-01-06 21:05:49 +01:00
mimadrid	dd159d06b6	r-modules: fix rcdd package	2017-01-06 21:05:49 +01:00
mimadrid	8b229baf33	r-modules: fix rbamtools package	2017-01-06 21:05:49 +01:00
mimadrid	558f67e85f	r-modules: fix R2SWF package	2017-01-06 21:05:48 +01:00
mimadrid	277efe9896	r-modules: fix sysfonts package	2017-01-06 21:05:48 +01:00
mimadrid	062c9037d1	r-modules: fix PopGenome package	2017-01-06 21:05:48 +01:00
mimadrid	c5ef08cc65	r-modules: fix PKI package	2017-01-06 21:05:48 +01:00
mimadrid	1e9071948f	r-modules: fix mwaved package	2017-01-06 21:05:48 +01:00
mimadrid	4e7de52c26	r-module: fix kza package	2017-01-06 21:05:47 +01:00
mimadrid	debb12ce1a	r-module: fix jpeg package	2017-01-06 21:05:47 +01:00
mimadrid	e3a2c97c7b	r-modules: fix gmp package	2017-01-06 21:05:47 +01:00
mimadrid	72eb6a8644	r-modules: fix fftwtools package	2017-01-06 21:05:47 +01:00
mimadrid	427c4d954a	r-modules: fix fftw package	2017-01-06 21:05:47 +01:00
mimadrid	b88b8ea05b	r-modules: fix devEMF package	2017-01-06 21:05:47 +01:00
mimadrid	6c6aab3e5b	r-modules: fix cairoDevice package	2017-01-06 21:05:47 +01:00
mimadrid	f717538866	r-modules: fix git2r package	2017-01-06 21:05:47 +01:00
mimadrid	88fcfafafe	r-modules: fix BayesXsrc package	2017-01-06 21:05:46 +01:00
mimadrid	6f9124e118	r-modules: fix Cairo package	2017-01-06 21:05:46 +01:00
mimadrid	321d5a01b6	r-modules: fix seewave package	2017-01-06 16:31:30 +01:00
Mike Sperber	6c226b1e7a	rPackages.DescTools: unbreak build outside of Linux. (#20787) ... DescTools does not require X during build, so remove it from that list.	2016-12-13 16:25:44 +01:00
Andreas Herrmann	98fce78cb3	r-modules: Fix png package ... The package requires the `dev` output of `libpng`.	2016-12-12 10:53:10 +01:00
Andreas Herrmann	cf3a2e99ad	r-modules: edgeR is broken due to broken url	2016-09-27 17:47:16 +02:00
Andreas Herrmann	54915ecf0d	r-modules: Fix h5 and rhdf5 ... and some packages that depend on them.	2016-09-27 17:46:06 +02:00
Peter Simons	23c122d277	r-openssl: fix build some more	2016-09-10 12:28:13 +02:00
Peter Simons	1196540a1d	r-openssl: fix build	2016-09-09 15:13:07 +02:00
Peter Simons	fe0256cd01	r-curl: fix build	2016-09-09 15:12:54 +02:00
Peter Simons	b2113f7893	r-XML: fix build	2016-09-09 14:36:49 +02:00
Thomas Tuegel	787875c287	r-stringi: fix build by including icu.dev output	2016-09-07 17:19:20 -05:00
Michael Stone	c1d24efd6a	darwin: R: provide gettext and gfortran as buildInputs on Darwin. ... As discussed in #10623, many R modules fail to build on Darwin without the libraries and compilers provided by these packages. For more detail, please see comment: https://github.com/NixOS/nixpkgs/pull/10623#issuecomment-172375342	2016-07-22 13:31:40 -04:00
Ben Darwin	a896233396	jags: 3.4.0 -> 4.1.0 (#16804) ... * jags: 3.4.0 -> 4.1.0 * unbreak rjags and dependent packages	2016-07-18 13:11:18 +02:00
Tuomas Tynkkynen	2a73de6e6c	treewide: Make explicit that 'dev' output of openssl is used	2016-05-19 10:02:23 +02:00
Tuomas Tynkkynen	3f8b08f506	treewide: Make explicit that 'dev' output of mpfr is used	2016-05-19 10:00:49 +02:00
Tuomas Tynkkynen	b465dc202f	boost: Kill unnecessary 'lib' output ... This was split in somewhere pre-2014 without the current infra which automates parts of this, in particular the output propagation.	2016-04-28 00:41:28 +03:00
Peter Simons	a6978ded09	Merge pull request #14144 from jefdaj/r-bioc-data-packages ... r-modules: update CRAN, add Bioconductor data packages	2016-04-15 14:46:19 +02:00
Jeffrey David Johnson	2291885f9e	mark bioc packages broken; should match hydra now	2016-04-14 14:34:11 -07:00
Jeffrey David Johnson	f88843f545	mark bioc packages broken; should match hydra now	2016-04-14 09:54:46 -07:00
Jeffrey David Johnson	2f6581df00	r-modules: mark mzR broken	2016-04-12 14:16:43 -07:00
Jeffrey David Johnson	3c0fb5ede1	work on fixing up bioconductor packages	2016-03-31 11:36:39 -07:00
Jeffrey David Johnson	c9934bbcb8	work on fixing up bioconductor packages	2016-03-31 11:17:21 -07:00
Jeffrey David Johnson	518fd135ed	work on fixing up bioconductor packages	2016-03-27 23:14:24 -07:00
Jeffrey David Johnson	e98a231af8	work on fixing up bioconductor packages	2016-03-26 11:26:29 -07:00
Jeffrey David Johnson	05fc143451	work on fixing up bioconductor packages	2016-03-25 09:15:02 -07:00
Jeffrey David Johnson	1911d4925e	work on fixing up bioconductor package	2016-03-25 00:30:20 -07:00
Jeffrey David Johnson	4cd2202918	work on fixing up bioconductor packages	2016-03-24 14:51:21 -07:00
Jeffrey David Johnson	66bcbfb93d	r-modules: update CRAN, add Bioconductor data pkgs	2016-03-22 22:50:54 -07:00
Tuomas Tynkkynen	555292017e	treewide: Mass replace 'xorg.libXft}/lib' to refer the 'out' output	2016-01-24 10:03:37 +02:00
Vladimír Čunát	716aac2519	Merge branch 'staging' into closure-size	2016-01-19 09:55:31 +01:00
Asko Soukka	a225a650bf	R: fix Darwin build ... Merged manually from https://github.com/NixOS/nixpkgs/pull/10623.	2016-01-06 22:20:40 +01:00
Michel Kuhlmann	26f80d7a6f	r-modules: update list of broken packages ... Closes https://github.com/NixOS/nixpkgs/pull/12181.	2016-01-06 21:50:36 +01:00
Vladimír Čunát	f9f6f41bff	Merge branch 'master' into closure-size ... TODO: there was more significant refactoring of qtbase and plasma 5.5 on master, and I'm deferring pointing to correct outputs to later.	2015-12-31 09:53:02 +01:00
Peter Simons	3a8112f7da	r-modules: prefer gsl 1.x since 2.x is unsupported by r-gsl-1.9.x	2015-12-29 21:22:59 +01:00
Luca Bruno	a412927924	Merge remote-tracking branch 'origin/master' into closure-size	2015-11-25 21:37:30 +01:00
Peter Simons	de02462a36	r-modules: update list of broken packages	2015-11-25 11:39:28 +01:00
Nikolay Amiantov	287f99bada	r-modules: use HTTPS, allow passing args from generated set, use MRAN	2015-11-25 11:39:28 +01:00
Peter Simons	fa5de61315	r-tikzDevice: update to new texlive	2015-11-24 17:30:28 +01:00
Vladimír Čunát	333d69a5f0	Merge staging into closure-size ... The most complex problems were from dealing with switches reverted in the meantime (gcc5, gmp6, ncurses6). It's likely that darwin is (still) broken nontrivially.	2015-11-20 14:32:58 +01:00
Peter Simons	d7e6a46770	r-modules: update list of broken builds to avoid Hydra errors	2015-11-18 15:23:46 +01:00
Michel Kuhlmann	cab1f3de5e	R: regenerate CRAN packages	2015-11-17 14:34:27 +01:00