Felix Buehler
2f4a86e7d7
messer-slim: switch to fetchFromGitHub
2021-12-23 19:11:17 +01:00
Felix Buehler
e1bd890fb0
niftyseg: switch to fetchFromGitHub
2021-12-23 19:11:17 +01:00
Felix Buehler
cb448459d0
potassco: switch to fetchFromGitHub
2021-12-23 19:11:17 +01:00
github-actions[bot]
5e2c1acfa3
Merge master into staging-next
2021-12-22 18:01:00 +00:00
Justin Bedo
fa6244b712
picard-tools: 2.26.6 -> 2.26.9
2021-12-22 22:20:36 +11:00
7c6f434c
080d8f0d72
Merge pull request #151635 from collares/sage-fonttools
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[staging-next] sage: assume fonttools DeprecationWarnings are expected for now
2021-12-22 07:50:33 +00:00
Mauricio Collares
93f9a9c36d
sage: assume fonttools DeprecationWarnings are expected for now
2021-12-21 23:10:07 -03:00
github-actions[bot]
39d035c4cf
Merge master into staging-next
2021-12-22 00:01:35 +00:00
Kierán Meinhardt
4bff3d7346
astrolog: init at 7.30
2021-12-21 22:24:48 +01:00
github-actions[bot]
a7f62c75af
Merge master into staging-next
2021-12-21 18:01:15 +00:00
FliegendeWurst
c080917139
geogebra: 5-0-662-0 -> 5-0-680-0
2021-12-21 17:09:50 +01:00
7c6f434c
d5db292192
Merge pull request #151424 from collares/sage-matplotlib
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[staging-next] sage: import matplotlib and sphinx update patches
2021-12-21 12:55:50 +00:00
Felix Buehler
f4931dfaee
ekrhyper: refactor
2021-12-21 12:44:01 +01:00
Dmitry Kalinkin
ac40a963c9
Merge branch 'master' into staging-next
...
Conflicts:
pkgs/applications/editors/vim/common.nix
pkgs/development/python-modules/jellyfin-apiclient-python/default.nix
pkgs/development/python-modules/pymavlink/default.nix
2021-12-20 12:09:28 -05:00
Mauricio Collares
3eaca311d4
sage: import matplotlib and sphinx update patches
2021-12-20 10:09:35 -03:00
Doron Behar
e6647de754
Merge pull request #151281 from r-ryantm/auto-update/qalculate-gtk
2021-12-19 22:40:43 +02:00
Dmitry Kalinkin
bbea48728b
Merge pull request #151151 from veprbl/pr/libcxx_no_apple_availability
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llvmPackages.libcxx: unset _LIBCPP_USE_AVAILABILITY_APPLE
2021-12-19 11:42:28 -05:00
Gabriel Ebner
a3bbbe08bd
Merge pull request #151328 from Kha/elan-lean-cc
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elan: set LEAN_CC to stdenv cc
2021-12-19 17:39:28 +01:00
Sebastian Ullrich
b20024dd3a
elan: set LEAN_CC to stdenv cc
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This ensures that `leanc` understands cc-wrapper vars such as `NIX_LDFLAGS`
2021-12-19 17:27:10 +01:00
Bobby Rong
856672f2ce
Merge pull request #151249 from lopsided98/mavproxy-update
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mavproxy: 1.8.45 -> 1.8.46
2021-12-19 22:21:30 +08:00
R. Ryantm
57ff8c2e36
qalculate-gtk: 3.21.0 -> 3.22.0
2021-12-19 07:38:29 +00:00
github-actions[bot]
2e447628d8
Merge master into staging-next
2021-12-19 06:01:16 +00:00
qbg
24111d6a7a
mathematica: 12.3.1 -> 13.0.0 ( #151213 )
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https://wolfram.com/mathematica/quick-revision-history.html#v130
2021-12-18 23:24:27 -05:00
R. Ryantm
d14a6ef13e
mavproxy: 1.8.45 -> 1.8.46
2021-12-18 20:04:55 -05:00
Dmitry Kalinkin
da8f155b2a
Merge branch 'master' into staging-next
...
Conflicts:
pkgs/development/python-modules/sphinxext-opengraph/default.nix
2021-12-18 10:18:14 -05:00
Dmitry Kalinkin
e1aaaa90fe
llvmPackages.libcxx: unset _LIBCPP_USE_AVAILABILITY_APPLE
2021-12-18 10:09:25 -05:00
Bobby Rong
bcaa1b4633
Merge pull request #149151 from Luflosi/update/boinc
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boinc: 7.14.2 -> 7.18.1
2021-12-18 21:32:22 +08:00
github-actions[bot]
2749f6983a
Merge master into staging-next
2021-12-17 06:01:26 +00:00
Dmitry Kalinkin
50a4c52747
Merge pull request #147648 from veprbl/pr/mxnet_1_8_0
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mxnet: 1.6.0 -> 1.8.0, enable on darwin
2021-12-16 22:37:03 -05:00
mucaho
1509f463a0
clingcon: 3.3.0 -> 5.0.0
2021-12-16 20:28:19 +01:00
github-actions[bot]
9c7ec75d6b
Merge master into staging-next
2021-12-16 06:01:09 +00:00
Silvan Mosberger
e30a4fa4bd
Merge pull request #149404 from Infinisil/remove-scyther
2021-12-16 01:56:39 +01:00
Dmitry Kalinkin
a7a3675563
gromacs: fix build on darwin
2021-12-15 15:22:10 -05:00
sternenseemann
d860ba7f09
Merge remote-tracking branch 'origin/master' into staging-next
2021-12-15 11:30:31 +01:00
Justin Bedő
f6e14b6ada
Merge pull request #150628 from jbedo/subread
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subread: init 2.0.3
2021-12-15 13:46:45 +11:00
github-actions[bot]
0242879f3f
Merge master into staging-next
2021-12-14 12:01:17 +00:00
Bobby Rong
e5a6bba62b
Merge pull request #150447 from r-ryantm/auto-update/seaview
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seaview: 5.0.4 -> 5.0.5
2021-12-14 18:38:55 +08:00
7c6f434c
b862304c67
Merge pull request #150597 from collares/sage-arb
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arb: 2.20.0 -> 2.21.1
2021-12-14 08:56:42 +00:00
Justin Bedo
6a1f4a51eb
subread: init 2.0.3
2021-12-14 13:30:23 +11:00
github-actions[bot]
784572e7cf
Merge master into staging-next
2021-12-13 18:01:18 +00:00
Mauricio Collares
9b35049770
sage: import arb 2.21.0 test fixes
2021-12-13 11:16:33 -03:00
Dmitry Kalinkin
8f0a587d4a
z3: fix darwin build
2021-12-13 07:42:47 -05:00
Oleksii Filonenko
a400948064
Merge pull request #149167 from r-ryantm/auto-update/rink
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rink: 0.6.1 -> 0.6.2
2021-12-13 14:40:57 +02:00
Martin Weinelt
423119b70b
Merge branch 'master' into staging-next
2021-12-13 12:20:07 +01:00
Felix Buehler
4cc23f2b1e
why3.withProvers: add dontUnpack
2021-12-12 20:33:14 +01:00
R. Ryantm
d4a5bdc264
seaview: 5.0.4 -> 5.0.5
2021-12-12 15:59:16 +00:00
Dmitry Kalinkin
1dcb22acc9
Merge branch 'master' into staging-next
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Conflicts:
pkgs/development/python-modules/gdown/default.nix
2021-12-12 00:00:04 -05:00
Mario Rodas
e09a539ccb
Merge pull request #150166 from r-ryantm/auto-update/gmsh
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gmsh: 4.8.4 -> 4.9.0
2021-12-11 22:52:19 -05:00
Ryan Mulligan
9e570d0034
Merge pull request #150031 from r-ryantm/auto-update/jmol
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jmol: 14.31.49 -> 14.32.2
2021-12-11 16:23:05 -08:00
Dmitry Kalinkin
b6b59334bb
Merge branch 'master' into staging-next
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Conflicts:
pkgs/development/python-modules/celery/default.nix
pkgs/development/python-modules/kombu/default.nix
2021-12-11 13:15:49 -05:00
Jörg Thalheim
453b06c677
Merge pull request #150121 from markuskowa/fix-cp2k
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cp2k: make elpa optional
2021-12-11 14:04:41 +00:00
Jörg Thalheim
4e5d03cd21
Merge pull request #150111 from r-ryantm/auto-update/gretl
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gretl: 2021b -> 2021d
2021-12-11 13:34:40 +00:00
Jörg Thalheim
953bdd43bf
Merge pull request #150124 from r-ryantm/auto-update/gwyddion
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gwyddion: 2.59 -> 2.60
2021-12-11 13:31:59 +00:00
Jörg Thalheim
2a322411ff
Merge pull request #150217 from r-ryantm/auto-update/cryptoverif
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cryptoverif: 2.04 -> 2.05
2021-12-11 12:53:42 +00:00
R. Ryantm
50554a43cf
cryptoverif: 2.04 -> 2.05
2021-12-11 10:05:51 +00:00
R. Ryantm
2d939d3262
gmsh: 4.8.4 -> 4.9.0
2021-12-11 01:08:58 +00:00
R. Ryantm
baf80d066b
gama: 2.14 -> 2.16
2021-12-10 22:15:01 +00:00
R. Ryantm
7bbf6a048b
gwyddion: 2.59 -> 2.60
2021-12-10 20:19:55 +00:00
Markus Kowalewski
6d1f54dc5d
cp2k: make elpa optional
2021-12-10 20:56:21 +01:00
R. Ryantm
7abc2f38b4
gretl: 2021b -> 2021d
2021-12-10 19:06:52 +00:00
github-actions[bot]
cc51bd619c
Merge master into staging-next
2021-12-10 18:01:06 +00:00
Ryan Mulligan
76d64cf517
Merge pull request #149908 from r-ryantm/auto-update/marvin
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marvin: 21.9.0 -> 21.18.0
2021-12-10 06:36:30 -08:00
R. Ryantm
a1fa86e691
jmol: 14.31.49 -> 14.32.2
2021-12-10 10:13:57 +00:00
github-actions[bot]
b2a2a5759e
Merge master into staging-next
2021-12-10 06:01:17 +00:00
Maximilian Bosch
c87f93843c
Merge pull request #148905 from r-ryantm/auto-update/calc
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calc: 2.13.0.1 -> 2.14.0.8
2021-12-10 01:22:16 +01:00
github-actions[bot]
92aabc6576
Merge master into staging-next
2021-12-10 00:01:53 +00:00
7c6f434c
26b52ea6a6
Merge pull request #149596 from r-ryantm/auto-update/polymake
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polymake: 4.4 -> 4.5
2021-12-09 22:48:21 +00:00
R. Ryantm
806d3e25cd
marvin: 21.9.0 -> 21.18.0
2021-12-09 19:20:04 +00:00
github-actions[bot]
379c22dbb3
Merge master into staging-next
2021-12-09 18:01:06 +00:00
Vincent Laporte
a2dc97cd5c
proverif: 2.03 → 2.04
2021-12-09 17:45:15 +01:00
Vincent Laporte
a160defe64
coq_8_15: init at 8.15+rc1
2021-12-09 15:46:06 +01:00
Alyssa Ross
c9a581b05f
Merge remote-tracking branch 'nixpkgs/master' into staging-next
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CONFLICT (rename/add): Rename pkgs/development/python-modules/jsonwatch/default.nix->pkgs/tools/misc/jsonwatch/default.nix in nixpkgs/master. Added pkgs/tools/misc/jsonwatch/default.nix in HEAD
2021-12-09 01:43:58 +00:00
Jörg Thalheim
2808a3bc74
Merge pull request #149465 from r-ryantm/auto-update/openmvg
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openmvg: 1.6 -> 2.0
2021-12-08 15:15:48 +00:00
R. Ryantm
5a5f052be8
polymake: 4.4 -> 4.5
2021-12-08 10:49:07 +00:00
Alyssa Ross
16fb150e03
Merge remote-tracking branch 'nixpkgs/master' into staging-next
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Conflicts:
pkgs/development/libraries/libunwind/default.nix
2021-12-07 23:56:16 +00:00
R. Ryantm
3112fe2ace
openmvg: 1.6 -> 2.0
2021-12-07 20:17:43 +00:00
Silvan Mosberger
55af3549a3
scyther: remove since it only supports Python 2
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See https://github.com/cascremers/scyther/issues/20
2021-12-07 17:58:03 +01:00
R. Ryantm
d337b164d6
minimap2: 2.22 -> 2.23
2021-12-07 15:04:36 +00:00
R. Ryantm
817561795f
logisim-evolution: 3.7.1 -> 3.7.2
2021-12-07 12:21:37 +00:00
Jonathan Ringer
9dd8bffe92
Merge remote-tracking branch 'origin/master' into staging-next
...
Conflicts:
pkgs/development/python-modules/aiocron/default.nix
2021-12-07 00:11:07 -08:00
Artturi
84bd0d6b7b
Merge pull request #147023 from wackbyte/fix-groove
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groove: 5.7.4 -> 5.8.1 and jre -> jre8
2021-12-07 05:12:15 +02:00
R. Ryantm
5517f74759
rink: 0.6.1 -> 0.6.2
2021-12-06 23:57:17 +00:00
Luflosi
ca87168c6e
boinc: copy systemd service file to output
2021-12-06 23:56:06 +01:00
Luflosi
4e0d9003fc
boinc: 7.14.2 -> 7.18.1
2021-12-06 23:56:06 +01:00
Luflosi
a7be4f3840
boinc: add Luflosi as maintainer
2021-12-06 23:56:05 +01:00
github-actions[bot]
ffbac7335b
Merge master into staging-next
2021-12-06 18:01:23 +00:00
7c6f434c
67f094f56b
Merge pull request #149043 from 7c6f434c/golly-update
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golly: 3.3 -> 4.1
2021-12-06 16:17:35 +00:00
Michael Raskin
65b2df8b45
golly: 3.3 -> 4.1
2021-12-06 16:27:09 +01:00
R. Ryantm
d5368e3bdb
clingo: 5.5.0 -> 5.5.1
2021-12-06 09:34:25 +00:00
R. Ryantm
6c000f4835
calc: 2.13.0.1 -> 2.14.0.8
2021-12-06 07:03:08 +00:00
github-actions[bot]
5a1288f93b
Merge master into staging-next
2021-12-05 00:01:53 +00:00
Justin Bedő
711ef56370
Merge pull request #148514 from jbedo/picard
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picard-tools: 2.26.4 -> 2.26.6
2021-12-05 06:56:25 +11:00
github-actions[bot]
67691cf506
Merge master into staging-next
2021-12-04 00:01:30 +00:00
markuskowa
660a7744c6
Merge pull request #148303 from markuskowa/add-elpa
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elpa: init at 2021.05.002_bugfix
2021-12-03 22:52:58 +01:00
markuskowa
0016232876
Merge pull request #148350 from jbedo/genmap
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genmap: init 1.3.0
2021-12-03 21:55:44 +01:00
Justin Bedo
17e3b75414
picard-tools: 2.26.4 -> 2.26.6
2021-12-04 07:51:31 +11:00
Justin Bedo
1a768ef4da
genmap: init 1.3.0
2021-12-04 06:51:16 +11:00
Jonathan Ringer
9fcf9be974
Merge remote-tracking branch 'origin/staging' into staging-next
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Conflicts:
pkgs/development/python-modules/bx-python/default.nix
2021-12-03 00:11:41 -08:00
Austin Seipp
2a295f42c8
symbiyosys: 2021.09.13 -> 2021.11.30
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Signed-off-by: Austin Seipp <aseipp@pobox.com>
2021-12-02 21:48:51 -06:00
Austin Seipp
a79ca33d94
yosys: 0.10+1 -> 0.11+52, with abc update
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Signed-off-by: Austin Seipp <aseipp@pobox.com>
2021-12-02 21:48:51 -06:00
Bobby Rong
296de886d0
Merge pull request #148019 from hjones2199/kstars356
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kstars: 3.5.5 -> 3.5.6
2021-12-03 09:24:39 +08:00
Jonathan Ringer
35f45f9dd7
Merge pull request #147426 from NixOS/python-unstable
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Python unstable 2021-11-25
2021-12-02 15:56:12 -08:00
wackbyte
6a2815218d
groove: 5.7.4 -> 5.8.1 and jre -> jre8
...
I tested OpenJDK11 but it didn't seem to work.
2021-12-02 22:18:13 +02:00
Markus Kowalewski
53f32adc65
cp2k: build with elpa
2021-12-02 17:22:41 +01:00
qbg
b5b4a6ac4f
mathematica: Install desktop items ( #147641 )
2021-12-02 15:17:23 +02:00
Ryan Burns
ac9ad0a998
Merge pull request #148240 from hjones2199/adopt-multi
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adopt multiple packages
2021-12-01 23:34:28 -08:00
Hunter Jones
b952a9b16e
adopt multiple packages
2021-12-01 22:04:14 -06:00
Justin Bedo
82aef7957d
fastp: 0.23.1 -> 0.23.2
2021-12-02 08:03:17 +11:00
Vincent Laporte
48406e3fca
coq_8_14: 8.14.0 → 8.14.1
...
And build Coq ≥ 8.14 with OCaml 4.12
2021-12-01 13:46:15 +01:00
Jörg Thalheim
e89d789748
Merge pull request #148096 from arkivm/fix-mrtrix
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mrtrix: 3.0.2 -> unstable-2021-11-25
2021-12-01 10:27:11 +00:00
Doron Behar
43ed12450e
Merge pull request #147828 from doronbehar/pkg/maxima
2021-12-01 11:34:38 +02:00
Vikram Narayanan
b1d95dca56
mrtrix: 3.0.2 -> unstable-2021-11-25
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The latest stable version fails to build with latest eigen (> 3).
https://github.com/MRtrix3/mrtrix3/pull/2368
2021-11-30 21:03:53 -08:00
Fabian Affolter
c586350dfb
flatcam: add packaging
2021-11-30 18:52:55 -08:00
Doron Behar
50ba747abe
yacas: Fix gui and jupyter build
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- Add a patch fixing jsoncpp include.
- Add a build flag for java support.
- Add a `yacas-gui` build that is built with Gui (and jupyter support disabled).
- Enable tests.
- Reformat expression with a 1 input / argument per line.
2021-12-01 01:51:31 +02:00
Sandro
964a962222
Merge pull request #143545 from r-ryantm/auto-update/betaflight-configurator
2021-11-30 18:13:23 +01:00
Hunter Jones
b04ef6a552
kstars: 3.5.5 -> 3.5.6
2021-11-30 08:13:12 -06:00
tilcreator
5989d54401
inav-configurator: init at 3.0.2
2021-11-30 15:11:55 +01:00
Sandro
ebdd276b68
Merge pull request #147499 from trofi/fix-samtools-for-ncurses-6.3
2021-11-29 20:33:45 +01:00
Doron Behar
57ab62314b
maxima, sage: Simplify lisp-compiler arguments namings
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Make clearer the difference between `maxima` and `maxima-ecl` top-level
attributes. Use the `lisp-compiler` as a passthru for all of sage's
expressions. Add the `pname` attribute for `ecl` for compatibility with
other lisp implementations.
2021-11-29 15:51:30 +02:00
Doron Behar
8d17f4babf
maxima: 5.45.0 -> 5.45.1
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- Reformat expression with 1 line per input / argument
- Add @doronbehar as maintainer.
2021-11-29 15:51:29 +02:00
Doron Behar
8d227fe05c
wxmaxima: 21.05.2 -> 21.11.0
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- Remove the `Version-` prefix from the version.
- Add @doronbehar as maintainer.
2021-11-29 14:41:57 +02:00
Dmitry Kalinkin
51bf009063
mxnet: 1.6.0 -> 1.8.0
2021-11-28 17:27:31 -05:00
Dmitry Kalinkin
b39504da72
mxnet: fix for gcc10+, enable on darwin
2021-11-28 17:27:11 -05:00
Markus Kowalewski
5cfe3c4e82
gromacs: fix double precission build on aarch64
2021-11-28 12:43:57 +01:00
Dmitry Kalinkin
b1b02f09ad
Merge pull request #147671 from trofi/fix-root5-for-binutils-2.36
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root5: binutils 2.37 fix
2021-11-28 04:43:28 -05:00
Bernardo Meurer
51694b0af4
root5: binutils 2.37 fix
...
Co-authored-by: TredwellGit <tredwell@tutanota.com>
2021-11-28 08:49:32 +00:00
Sandro
5d6a70c260
Merge pull request #147202 from voidIess/u/geogebra_6_0_672_0
2021-11-28 03:51:46 +01:00
Markus Kowalewski
8fb36866b8
octopus: 11.2 -> 11.3
2021-11-28 00:04:47 +01:00
Chad Jablonski
7944324d80
programmer-calculator: 2.1 -> 2.2
2021-11-26 23:19:39 -05:00
Sergei Trofimovich
8147fb683c
samtools: pull upstream fix for ncurses-6.3
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Without the fix build on ncurses-6.3 fails as:
bam_tview_curses.c:88:5: error: format not a string literal and no format arguments [-Werror=format-security]
88 | mvprintw(y,x,str);
| ^~~~~~~~
2021-11-26 13:02:05 +00:00
Ellie Hermaszewska
7282988ce9
Merge pull request #147394 from wirew0rm/bumpPicoscope
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picoscope: 7.0.83 -> 7.0.86 + LANG=C
2021-11-26 09:33:26 +08:00
Sandro
eff5cece35
Merge pull request #146648 from florentc/tlaplus
2021-11-25 12:38:31 +01:00
Justin Bedo
c1eb0dddea
delly: 0.8.7 -> 0.9.1
2021-11-25 21:19:48 +11:00
Florent C
b5d3526bab
tlaplus: 1.7.0 -> 1.7.1
...
This updates tlaplus to the most recent stable version and directly
fetches the tlatools jar file from the official Github release page
instead of building from the sources. In the previous tlaplus nix
package, there was an issue with the tools when passing some command
line arguments such as `-workers 4` for TLC. A java string method was
not found and the program would not proceed correctly. This solves this
issue.
2021-11-25 10:56:11 +01:00
voidless
a34736a38f
geogebra6 6-0-644-0 -> 6-0-676-0
2021-11-24 23:15:54 +01:00
Alexander Krimm
e248ab379a
picoscope: set LANG=C in wrapper
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The picoscope application seems to crash for non-english locales. This
overrides the LANG environment variable to C. This does not affect the
language selected in the mono gtk GUI.
2021-11-23 11:26:40 +01:00
Alexander Krimm
d56073935d
picoscope: 7.0.83 -> 7.0.86
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Update performed via update.py, other affected versions:
libps*: 2.1.75 -> 2.1.76
libpicoipp: 1.3.0-4r121 -> 1.3.0-4r130
2021-11-23 11:21:26 +01:00
evils
decac5a0d2
kicad-unstable: 2021-07-12 -> 6.0.0-rc1 ( #142261 )
...
* kicad-unstable: 2021-07-12 -> 2021-11-10
with changes to library paths
Plugin and Content Manager seems to work
(not related to the library paths changes)
* kicad-unstable: 2021-11-10 -> 6.0.0-rc1
2021-11-23 00:05:57 -05:00
evils
d2c4e0a3ba
kicad: 5.1.11 -> 5.1.12 ( #145403 )
...
very minor change
5.1.11 was never officially released
due to a re-tag
2021-11-23 00:05:27 -05:00
github-actions[bot]
18ad263272
Merge master into staging-next
2021-11-21 18:01:07 +00:00
Artturi
8d6a02b049
Merge pull request #146787 from risicle/ris-hmmer-x86_64
2021-11-21 17:46:47 +02:00
Sandro
07f29d2db2
Merge pull request #146829 from r-burns/isx86
2021-11-21 14:20:12 +01:00
github-actions[bot]
c68c4b3db8
Merge master into staging-next
2021-11-21 12:01:20 +00:00
7c6f434c
b56d7a70a7
Merge pull request #146792 from SuperSandro2000/R
...
R: manually fix things after patches got applied
2021-11-21 08:57:26 +00:00
github-actions[bot]
6ad93ecdbb
Merge master into staging-next
2021-11-21 06:01:18 +00:00
Ryan Burns
2175b157ac
treewide: refactor isi686 && isx86_64 -> isx86
2021-11-20 17:50:41 -08:00
Mauricio Collares
1ee4cb8d93
sage: patch test so that new pari warning doesn't cause failures ( #4 )
2021-11-20 20:13:07 -03:00
Sandro
00a52ef677
R: manually fix things after patches got applied
...
This prevents conflicts in case a patch changes the same line
2021-11-20 21:10:28 +01:00
Robert Scott
ec24bab90e
hmmer: restrict platforms to x86_64
...
technically big-endian powerpc with VMX is also supported, but
on x86, SSE is apparently *required* which means we can't build
a pure i686 version
2021-11-20 19:17:57 +00:00
AndersonTorres
dc2cad8150
gp2c: cosmetical changes
2021-11-19 20:35:16 -03:00
