Mario Rodas
46a93d0751
Merge pull request #287601 from trofi/stp-gcc-13-fix
...
stp: fix the build against `gcc-13`
2024-02-14 20:17:23 -05:00
github-actions[bot]
82277a5b63
Merge master into haskell-updates
2024-02-15 00:12:24 +00:00
Dmitry Kalinkin
3b27f2ac6e
xfitter: fix for recent clang ( #288816 )
2024-02-14 18:51:35 -05:00
Dmitry Kalinkin
419da635c6
Merge pull request #285505 from GaetanLepage/xroot
...
xrootd: 5.5.5 -> 5.6.6, python311Packages.xrootd: init at 5.6.6
2024-02-14 11:15:22 -05:00
R. Ryantm
55fab6dfd9
last: 1540 -> 1541
2024-02-14 15:51:25 +00:00
Nick Cao
a42f5c6d1a
Merge pull request #256126 from bouk/openmvg-use-nixpkgs-libraries
...
openmvg: unstable-2022-12-30 -> 2.1
2024-02-14 09:31:01 -05:00
Bouke van der Bijl
91414c639f
openmvg: unstable-2022-12-30 -> 2.1
...
* Use the nixpkgs libraries instead of the vendored ones
* Add updateScript
Co-authored-by: Nick Cao <nickcao@nichi.co>
2024-02-14 11:23:46 +01:00
Phillip Seeber
06a5108a6c
avogadro2: 1.98.1 -> 1.99.0
2024-02-14 10:46:01 +01:00
kirillrdy
399d51fba7
Merge pull request #287721 from trofi/megahit-gcc-13-fix
...
megahit: fix `gcc-13` build failure
2024-02-14 20:22:18 +11:00
kirillrdy
cd54cfb658
Merge pull request #287985 from trofi/svaba-gcc-13-fix
...
svaba: fix `gcc-13` build failure
2024-02-14 20:07:39 +11:00
github-actions[bot]
319f251f5c
Merge master into haskell-updates
2024-02-14 00:12:36 +00:00
Gaetan Lepage
7b9e11995d
xrootd: 5.5.5 -> 5.6.6
...
Changelog: https://github.com/xrootd/xrootd/releases/tag/v5.6.6
Structured attrs don't work with cmakeFlags - only first item is passed.
Co-authored-by: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
2024-02-13 16:45:54 -05:00
Sergei Trofimovich
3bbdc26df2
timeloop: unstable-2022-11-29 -> 3.0.3
...
Changes:
- https://github.com/NVlabs/timeloop/releases/tag/v3.0
- https://github.com/NVlabs/timeloop/releases/tag/v3.0.1
- https://github.com/NVlabs/timeloop/releases/tag/v3.0.2
- https://github.com/NVlabs/timeloop/releases/tag/v3.0.3
2024-02-13 08:19:21 +00:00
Nguyễn Gia Phong
b63babd55d
stp: fix build failure
2024-02-13 16:41:23 +09:00
Vincent Laporte
8601deaed1
cryptoverif: 2.07 → 2.08pl1
2024-02-13 06:23:27 +01:00
github-actions[bot]
ed9046f8aa
Merge master into haskell-updates
2024-02-13 00:13:09 +00:00
Doron Behar
4f78d8564d
Merge pull request #288127 from r-ryantm/auto-update/wxmaxima
...
wxmaxima: 24.02.0 -> 24.02.1
2024-02-12 10:32:54 +02:00
github-actions[bot]
04663e9026
Merge master into haskell-updates
2024-02-12 00:12:56 +00:00
Sandro
4b96fcd46b
Merge pull request #279656 from risicle/ris-degate-2.0.0
...
degate: init at 2.0.0
2024-02-11 23:39:17 +01:00
Mario Rodas
f9d39fb9af
Merge pull request #287604 from trofi/lean3-mark-broken
...
lean3: fix gcc-13 build failure
2024-02-11 17:04:38 -05:00
R. Ryantm
3ea21a4ea9
wxmaxima: 24.02.0 -> 24.02.1
2024-02-11 19:53:05 +00:00
Sergei Trofimovich
016be1d8b3
lean3: fix gcc-13 build failure)
...
Without the change the build fails on `master` as https://hydra.nixos.org/build/247665202 :
/build/source/src/shell/lean_js.h:11:32: error: 'uintptr_t' was not declared in this scope
11 | int emscripten_process_request(uintptr_t msg);
| ^~~~~~~~~
2024-02-11 19:47:22 +00:00
Robert Scott
36631d8171
Merge pull request #288090 from r-ryantm/auto-update/openrefine
...
openrefine: 3.7.7 -> 3.7.9
2024-02-11 19:11:41 +00:00
Nick Cao
175126c839
Merge pull request #287282 from r-ryantm/auto-update/magic-vlsi
...
magic-vlsi: 8.3.459 -> 8.3.460
2024-02-11 13:04:10 -05:00
Nick Cao
2d8077c394
Merge pull request #286906 from ashgillman/master
...
dcm2niix: 1.0.20211006 -> 1.0.20230411
2024-02-11 12:43:56 -05:00
R. Ryantm
1128be2775
openrefine: 3.7.7 -> 3.7.9
2024-02-11 17:18:59 +00:00
Nick Cao
dc4db874a0
Merge pull request #288017 from trofi/vowpal-wabbit-gcc-13-fix
...
vowpal-wabbit: fix `gcc-13` build failure
2024-02-11 10:18:31 -05:00
Sergei Trofimovich
14f9faadd0
vowpal-wabbit: fix gcc-13 build failure
...
Without the change build fails on `master as
https://hydra.nixos.org/build/248985028 :
In file included from /build/source/vowpalwabbit/core/src/named_labels.cc:5:
/build/source/vowpalwabbit/core/include/vw/core/named_labels.h:28:3: error: 'uint32_t' does not name a type
28 | uint32_t getK() const;
| ^~~~~~~~
2024-02-11 12:03:38 +00:00
Sergei Trofimovich
a74b1732a7
timeloop: fix gcc-13 build failure
...
Without the change build fails on `master` as
https://hydra.nixos.org/build/248973743 :
include/compound-config/compound-config.hpp:149:8: error: ‘uint64_t’ in namespace ‘std’ does not name a type; did you mean ‘wint_t’?
149 | std::uint64_t parseElementSize(std::string name);
| ^~~~~~~~
| wint_t
2024-02-11 10:44:44 +00:00
7c6f434c
9abbc21589
Merge pull request #286922 from r-ryantm/auto-update/jmol
...
jmol: 16.1.51 -> 16.1.53
2024-02-11 10:23:53 +00:00
Sergei Trofimovich
a59d5e3028
svaba: fix gcc-13 build failure
...
Without the change build fails on `master` as
https://hydra.nixos.org/build/249164637 :
In file included from Histogram.cpp:1:
Histogram.h:104:61: error: 'uint32_t' does not name a type
104 | Histogram(const int32_t& start, const int32_t& end, const uint32_t& width);
| ^~~~~~~~
2024-02-11 09:59:19 +00:00
github-actions[bot]
cf96a5e9ad
Merge master into haskell-updates
2024-02-11 00:13:59 +00:00
Weijia Wang
c00ace12ae
Merge pull request #287814 from trofi/openboardview-gcc-13-fix
...
openboardview: fix `gcc-13` build failure
2024-02-10 21:36:37 +01:00
Weijia Wang
9d579087ef
Merge pull request #287718 from trofi/mcrl2-update
...
mcrl2: 202206 -> 202307
2024-02-10 21:35:55 +01:00
Weijia Wang
7c66bc81f0
Merge pull request #287641 from wegank/jogl-rename
...
javaPackages.jogl_2_4_0: rename to jogl
2024-02-10 21:34:56 +01:00
Weijia Wang
b95f9bd48c
javaPackages.jogl_2_4_0: rename to jogl
2024-02-10 18:00:38 +01:00
Sergei Trofimovich
9684e352a8
openboardview: fix gcc-13 build failure
...
Without the change build fails on `master` as
https://hydra.nixos.org/build/247580552 :
/build/source/src/openboardview/FileFormats/FZFile.h:69:40: error: 'uint32_t' has not been declared
69 | FZFile(std::vector<char> &buf, uint32_t fzkey[44]);
| ^~~~~~~~
2024-02-10 16:23:29 +00:00
Sergei Trofimovich
90a5d1b931
megahit: fir gcc-13 build failure
...
Without the change build fails on `master` against `gcc-13` as
https://hydra.nixos.org/build/247673319 :
In file included from /build/source/src/main_local_assemble.cpp:27:
/build/source/src/localasm/local_assemble.h:31:3: error: 'uint32_t' does not name a type
31 | uint32_t kmin{11};
| ^~~~~~~~
/build/source/src/localasm/local_assemble.h:1:1: note: 'uint32_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
+++ |+#include <cstdint>
2024-02-10 10:26:43 +00:00
Sergei Trofimovich
d952b5884c
mcrl2: 202206 -> 202307
...
Among other things fixes `gcc-13` build fix as
https://hydra.nixos.org/build/247554470 :
In file included from /build/mcrl2-202206.1/libraries/utilities/source/bitstream.cpp:10:
/build/mcrl2-202206.1/libraries/utilities/include/mcrl2/utilities/bitstream.h:56:25: error: 'uint8_t' in namespace 'std' does not name a type; did you mean 'wint_t'?
56 | void write(const std::uint8_t* buffer, std::size_t size);
| ^~~~~~~
| wint_t
2024-02-10 10:14:43 +00:00
Cosima Neidahl
47072d1003
Merge pull request #259629 from vifino/sigrok-nightly
...
sigrok and friends: Update to nightly
2024-02-10 11:01:36 +01:00
R. Ryantm
5ca14e22c6
igv: 2.17.1 -> 2.17.2
2024-02-10 06:01:14 +00:00
github-actions[bot]
63f3a9268c
Merge master into haskell-updates
2024-02-10 00:12:04 +00:00
Sergei Trofimovich
b531de72bf
stp: fix the build against gcc-13
...
Without the change the build fails on `master` as
https://hydra.nixos.org/build/247636021 :
/build/source/include/stp/AST/ASTNode.h:77:3: error: 'uint8_t' does not name a type
77 | uint8_t getIteration() const;
| ^~~~~~~
2024-02-09 22:43:16 +00:00
R. Ryantm
cc15000690
cryptominisat: 5.11.15 -> 5.11.21
2024-02-09 04:52:13 +00:00
Sergei Trofimovich
e006445420
graphia: 3.2 -> 4.2
...
The main change is the build fis against `gcc-13`
https://hydra.nixos.org/build/247540136 :
/build/source/source/thirdparty/breakpad/src/client/linux/handler/minidump_descriptor.h:115:3: error: 'uintptr_t' does not name a type
115 | uintptr_t address_within_principal_mapping() const {
| ^~~~~~~~~
Changes:
- https://github.com/graphia-app/graphia/releases/tag/4.0
- https://github.com/graphia-app/graphia/releases/tag/4.1
- https://github.com/graphia-app/graphia/releases/tag/4.2
2024-02-08 23:30:17 +00:00
Manuel Frischknecht
14a19fa225
hh-suite: fix build on GCC 13
...
The build of `hh-suite` stopped working with GCC 13 because
GCC stopped transitively including a couple of headers like
`cstdint` in various scenarios.
There already is an upstream PR proposed that fixes this issue [1]
but hasn't been merged yet. This change pulls in this correction
using `fetchpatch`, fixing the build for now.
[1]: https://github.com/soedinglab/hh-suite/pull/357
2024-02-08 21:54:47 +00:00
Adrian Pistol
8b712406e6
pulseview: 0.4.2 -> 0.4.2-unstable-2024-01-26
2024-02-08 21:45:11 +01:00
R. Ryantm
4f45c92f1a
magic-vlsi: 8.3.459 -> 8.3.460
2024-02-08 17:49:42 +00:00
github-actions[bot]
1e13dfffc6
Merge master into haskell-updates
2024-02-08 00:12:04 +00:00
Robert Scott
005f312ae9
Merge pull request #286257 from risicle/ris-hal-hardware-analyzer-darwin-2024-02
...
hal-hardware-analyzer: fix build on darwin
2024-02-07 19:45:27 +00:00
Gaetan Lepage
ddb3833217
mujoco: 3.1.1 -> 3.1.2
...
Diff: https://github.com/google-deepmind/mujoco/compare/refs/tags/3.1.1...3.1.2
Changelog: https://github.com/google-deepmind/mujoco/releases/tag/3.1.2
2024-02-07 09:58:51 +01:00
Gaetan Lepage
62da9ca239
mujoco: mark as broken on darwin
2024-02-07 09:58:46 +01:00
R. Ryantm
469c60a3f5
jmol: 16.1.51 -> 16.1.53
2024-02-07 06:40:55 +00:00
Ashley Gillman
18eeabfe73
dcm2niix: 1.0.20211006 -> 1.0.20230411
2024-02-07 16:11:03 +10:00
github-actions[bot]
28d39db400
Merge master into haskell-updates
2024-02-07 00:12:13 +00:00
Justin Bedő
6b0d1402d7
Merge pull request #286653 from r-ryantm/auto-update/last
...
last: 1519 -> 1540
2024-02-07 11:04:57 +11:00
R. Ryantm
0b9427cf71
snakemake: 8.3.2 -> 8.4.4
2024-02-06 18:59:24 -05:00
Robert Scott
d5af553b62
Merge pull request #286741 from das-g/openrefine-mainprogram
...
openrefine: set meta.mainProgram
2024-02-06 19:14:07 +00:00
R. Ryantm
8e285cb208
eigenmath: unstable-2024-01-23 -> unstable-2024-02-04
2024-02-06 18:13:08 +00:00
Raphael Das Gupta
13f6915775
openrefine: set meta.mainProgram
2024-02-06 13:49:34 +01:00
R. Ryantm
ad308afcd0
last: 1519 -> 1540
2024-02-06 06:07:25 +00:00
github-actions[bot]
0e09aea96c
Merge master into haskell-updates
2024-02-06 00:12:25 +00:00
Nikolay Korotkiy
3ca762663e
Merge pull request #286427 from r-ryantm/auto-update/gnuastro
...
gnuastro: 0.21 -> 0.22
2024-02-05 19:53:53 +04:00
Nikolay Korotkiy
6d544c6ff1
gnuastro: add meta.changelog
2024-02-05 18:44:12 +04:00
Doron Behar
99f1454341
Merge pull request #286230 from r-ryantm/auto-update/wxmaxima
...
wxmaxima: 23.12.0 -> 24.02.0
2024-02-05 16:23:09 +02:00
R. Ryantm
5727c18299
gnuastro: 0.21 -> 0.22
2024-02-05 05:41:57 +00:00
github-actions[bot]
3a0aae25fa
Merge master into haskell-updates
2024-02-05 00:13:15 +00:00
Robert Scott
8904ea5c84
Merge pull request #285426 from r-ryantm/auto-update/seqkit
...
seqkit: 2.6.1 -> 2.7.0
2024-02-04 22:59:49 +00:00
Weijia Wang
ab45f7963c
Merge pull request #282757 from r-ryantm/auto-update/bada-bib
...
bada-bib: 0.8.0 -> 0.8.1
2024-02-04 23:44:55 +01:00
Weijia Wang
0b8abd7798
Merge pull request #281847 from r-ryantm/auto-update/eggnog-mapper
...
eggnog-mapper: 2.1.10 -> 2.1.12
2024-02-04 22:48:27 +01:00
Weijia Wang
c92f88b5e3
Merge pull request #281665 from r-ryantm/auto-update/bowtie2
...
bowtie2: 2.5.2 -> 2.5.3
2024-02-04 22:35:03 +01:00
Weijia Wang
d1cf8f73a8
Merge pull request #281484 from r-ryantm/auto-update/gama
...
gama: 2.27 -> 2.28
2024-02-04 22:26:51 +01:00
Weijia Wang
cca77236b0
Merge pull request #283967 from r-ryantm/auto-update/magic-vlsi
...
magic-vlsi: 8.3.456 -> 8.3.459
2024-02-04 20:45:02 +01:00
Weijia Wang
612a107ae5
Merge pull request #284008 from r-ryantm/auto-update/workcraft
...
workcraft: 3.4.1 -> 3.4.2
2024-02-04 20:35:45 +01:00
Weijia Wang
f46ad549e2
Merge pull request #286265 from r-ryantm/auto-update/nvc
...
nvc: 1.11.2 -> 1.11.3
2024-02-04 19:31:51 +01:00
Nick Cao
b2d58dc9da
Merge pull request #286155 from risicle/ris-hal-hardware-analyzer-gcc-13
...
hal-hardware-analyzer: fix build with gcc 13
2024-02-04 09:42:55 -05:00
Doron Behar
cb6c4d8ac0
wxmaxima.src: use hash instead of sha256
...
Co-authored-by: Muhammad Falak R Wani <falakreyaz@gmail.com>
2024-02-04 14:21:06 +00:00
arthsmn
4ee1815267
gplates: 2.3.0 -> 2.4
2024-02-04 14:19:31 +01:00
Weijia Wang
aeaed88f33
nvc: drop libelf on darwin
2024-02-04 14:04:24 +01:00
R. Ryantm
db2a3483c0
nvc: 1.11.2 -> 1.11.3
2024-02-04 12:06:27 +00:00
Robert Scott
a9efe8b635
hal-hardware-analyzer: fix build on darwin
...
allow old igraph to build on modern clang by ignoring some new
warnings, and build with sdk 11 to avoid memstream problems
2024-02-04 11:35:35 +00:00
Felix Bühler
bfda12002a
Merge pull request #285982 from herberteuler/fix/284736-mathematica
...
mathematica: minor fixes
2024-02-04 10:14:33 +01:00
R. Ryantm
07d74035fa
wxmaxima: 23.12.0 -> 24.02.0
2024-02-04 07:15:47 +00:00
github-actions[bot]
e93379ba64
Merge master into haskell-updates
2024-02-04 00:13:37 +00:00
Robert Scott
ce60e31cbd
hal-hardware-analyzer: fix build with gcc 13
2024-02-03 21:29:44 +00:00
Ben Darwin
d6d8fd86dd
abella: update url, refactor to finalAttrs style
2024-02-03 14:58:27 -05:00
Robert Scott
e5e19d75c0
Merge pull request #265959 from risicle/ris-openrefine
...
openrefine: init at 3.7.7
2024-02-03 14:28:55 +00:00
Robert Scott
272f7bb1f4
openrefine: init at 3.7.7
2024-02-03 13:37:59 +00:00
Guanpeng Xu
446a6771a6
mathematica: minor fixes
...
This change includes two fixes:
1. add the directory containing dbus' libraries to LD_LIBRARY_PATH
(#284736 )
2. avoid creating conflicting `libcuda.so` in the CUDA environment
2024-02-02 23:20:29 -08:00
github-actions[bot]
f7af6d355f
Merge master into haskell-updates
2024-02-03 00:12:45 +00:00
Markus Kowalewski
13eb3a2abe
gromacs: fix build on Darwin, add OpenMP for Darwin
...
Gromacs enables OpenMP by default and fails its configure
if it can not build with OpenMP.
2024-02-02 11:02:55 +01:00
github-actions[bot]
34dab68635
Merge master into haskell-updates
2024-02-02 00:12:11 +00:00
h7x4
51c3e2b494
Merge pull request #285171 from r-ryantm/auto-update/boinc
...
boinc: 7.24.2 -> 7.24.3
2024-02-01 20:17:27 +01:00
Weijia Wang
a07361dd1c
Merge pull request #285382 from wegank/gplates-fix
...
gplates: fix runtime error
2024-02-01 19:42:53 +01:00
markuskowa
cced9bc060
Merge pull request #285516 from markuskowa/upd-gromacs
...
gromacs: 2023.3 -> 2024
2024-02-01 14:56:20 +01:00
Rolf Schröder
f835df35c7
igv: use jdk17 instead of jdk11 ( #285521 )
2024-02-01 14:42:34 +01:00
Mario Rodas
3ada8a22ba
Merge pull request #285422 from marsam/update-lean4
...
lean4: 4.4.0 -> 4.5.0
2024-02-01 05:39:59 -05:00
Markus Kowalewski
e7ea94137c
gromacs: 2023.3 -> 2024
2024-02-01 10:55:43 +01:00
Mario Rodas
dbf625d8d7
Merge pull request #284969 from marsam/update-z3_4_12
...
z3_4_12: 4.12.4 -> 4.12.5
2024-01-31 23:50:04 -05:00
R. Ryantm
bfb42a9bbc
seqkit: 2.6.1 -> 2.7.0
2024-02-01 04:24:02 +00:00
R. Ryantm
60c52cdb35
diamond: 2.1.8 -> 2.1.9
2024-02-01 04:22:08 +00:00
Mario Rodas
2c6116bd1c
lean4: add version tester
2024-02-01 04:20:00 +00:00
Mario Rodas
6a068abcfc
lean4: 4.4.0 -> 4.5.0
...
Diff: https://github.com/leanprover/lean4/compare/v4.4.0...v4.5.0
Changelog: https://github.com/leanprover/lean4/blob/v4.5.0/RELEASES.md
2024-02-01 04:20:00 +00:00
github-actions[bot]
05ce1c8cd3
Merge master into haskell-updates
2024-02-01 00:13:01 +00:00
Weijia Wang
fa0efec1d5
gplates: fix runtime error
2024-01-31 23:16:41 +01:00
Dmitry Kalinkin
f125235a38
root: 6.30.02 -> 6.30.04 ( #285339 )
2024-01-31 15:25:14 -05:00
Arnout Engelen
af0add86d4
gnucap-modelgen-verilog: init at 20240130-dev
...
Introducing 'withPlugins' infrastructure to gnucap
2024-01-31 17:50:19 +01:00
Arnout Engelen
1f07009ddb
gnucap: 20210107 -> 20240130-dev
...
The last full release is so old the upgrade to a development release
seems reasonable: there may be new bugs, but also old bugs have been
fixed. It doesn't seem worth it to support both side-by-side at this
point.
2024-01-31 17:15:03 +01:00
Peder Bergebakken Sundt
aa10fea3ef
Merge pull request #222817 from SuperSandro2000/python-sitePackages
...
treewide: replace `lib/${python.libPrefix}/site-packages` with its sh…
2024-01-31 16:34:30 +01:00
R. Ryantm
6fed14e6ac
boinc: 7.24.2 -> 7.24.3
2024-01-31 03:49:58 +00:00
github-actions[bot]
99d08bb877
Merge master into haskell-updates
2024-01-31 00:12:49 +00:00
Sandro Jäckel
653837881e
treewide: replace lib/${python.libPrefix}/site-packages with its shorthand ${python.sitePackages}
...
which should be always preferred
2024-01-30 19:56:57 +01:00
Sandro
950c66b787
Merge pull request #284607 from dotlambda/deeptools-fix
...
deeptools: fix build
2024-01-30 17:16:22 +01:00
figsoda
6446f962a1
Merge pull request #283906 from ConnorBaker/feat/egglog-unstable-2024-01-26
...
egglog: unstable-2023-09-12 -> 0-unstable-2024-01-26
2024-01-30 10:01:53 -05:00
Nick Cao
1d852c8b67
Merge pull request #284834 from wegank/btor2tools-gcc-13
...
btor2tools: fix build with gcc 13
2024-01-30 09:04:32 -05:00
markuskowa
07cc24b23a
Merge pull request #284940 from r-ryantm/auto-update/mopac
...
mopac: 22.1.0 -> 22.1.1
2024-01-30 13:08:13 +01:00
Phillip Seeber
dc237cc486
octopus: add mpi and libvdwxc support
2024-01-30 10:55:41 +01:00
h7x4
78352292f6
Merge pull request #284388 from evils/kicad
...
kicad: 7.0.9 -> 7.0.10
2024-01-30 09:15:53 +01:00
R. Ryantm
5a21941adf
mopac: 22.1.0 -> 22.1.1
2024-01-30 06:46:10 +00:00
R. Ryantm
222c1940fa
cvc5: 1.1.0 -> 1.1.1
2024-01-30 05:45:19 +01:00
Mario Rodas
4fadc26e4a
z3_4_12: 4.12.4 -> 4.12.5
...
Diff: https://github.com/Z3Prover/z3/compare/z3-4.12.4...z3-4.12.5
Changelog: https://github.com/Z3Prover/z3/releases/tag/z3-4.12.5
2024-01-30 04:20:00 +00:00
github-actions[bot]
b0233d387c
Merge master into haskell-updates
2024-01-30 00:12:10 +00:00
Weijia Wang
b03c6a4e9a
btor2tools: fix build with gcc 13
2024-01-29 21:35:06 +01:00
Jonas Chevalier
b1e30d76d4
fahclient: 8.1.18 -> 8.3.1 ( #281830 )
...
* fahclient: 8.1.18 -> 8.3.1
* Update pkgs/applications/science/misc/foldingathome/client.nix
Co-authored-by: Robert Schütz <github@dotlambda.de>
* Update pkgs/applications/science/misc/foldingathome/client.nix
Co-authored-by: Robert Schütz <github@dotlambda.de>
---------
Co-authored-by: Robert Schütz <github@dotlambda.de>
2024-01-29 18:17:16 +01:00
Vincent Laporte
d0cdb657c2
why3: move the OCaml library to its own dev output
2024-01-29 09:40:12 +01:00
Vincent Laporte
e997629cea
why3: make it easy to disable IDE support
...
easycrypt: use why3 without IDE support
2024-01-29 09:40:12 +01:00
Vincent Laporte
c4f01b3b73
why3: 1.7.0 → 1.7.1
2024-01-29 09:40:12 +01:00
7c6f434c
8b0b0782ef
Merge pull request #284620 from r-ryantm/auto-update/jmol
...
jmol: 16.1.49 -> 16.1.51
2024-01-29 08:25:49 +00:00
github-actions[bot]
c2791e85de
Merge master into haskell-updates
2024-01-29 00:12:49 +00:00
Weijia Wang
6c881251a3
Merge pull request #283668 from wegank/fritzing-bump-2
...
fritzing: 1.0.1 -> 1.0.2
2024-01-29 00:47:06 +01:00
R. Ryantm
bf755a20c6
jmol: 16.1.49 -> 16.1.51
2024-01-28 21:17:02 +00:00
Robert Schütz
5e0f2a454f
Merge pull request #284570 from r-ryantm/auto-update/samtools
...
samtools: 1.19 -> 1.19.2
2024-01-28 20:28:31 +00:00
R. Ryantm
fb95ecbbe2
samtools: 1.19 -> 1.19.2
2024-01-28 12:24:10 -08:00
Robert Schütz
ac3e621e7f
deeptools: fix build
2024-01-28 12:17:37 -08:00
Pascal Bach
f271ce7c25
Merge pull request #284425 from carlossless/dsview-darwin
...
dsview: darwin support
2024-01-28 20:22:52 +01:00
Nick Cao
e720191dad
Merge pull request #284406 from r-ryantm/auto-update/eigenmath
...
eigenmath: unstable-2024-01-22 -> unstable-2024-01-23
2024-01-28 10:59:09 -05:00
Weijia Wang
d050f04dc5
gama: fix build on aarch64-darwin
2024-01-28 08:25:53 +01:00
Karolis Stasaitis
d2f2058b0a
dsview: build for darwin
2024-01-28 10:36:49 +05:30
R. Ryantm
633d37d5f1
eigenmath: unstable-2024-01-22 -> unstable-2024-01-23
2024-01-28 04:04:14 +00:00
Evils
bb6a8f8625
kicad: 7.0.9 -> 7.0.10
2024-01-28 03:04:51 +01:00
github-actions[bot]
bc838f6bd7
Merge master into haskell-updates
2024-01-28 00:13:47 +00:00
R. Ryantm
3a43e5269a
kicad-testing: 7.0-2024-01-07 -> 7.0-2024-01-27
2024-01-27 20:48:43 +00:00
R. RyanTM
ec66ff787e
snakemake: 8.2.1 -> 8.3.2 ( #284218 )
2024-01-27 09:26:23 -05:00
Connor Baker
a04f9a5e9e
egglog: unstable-2023-09-12 -> 0-unstable-2024-01-26
2024-01-26 22:47:43 -05:00
github-actions[bot]
11b995fb74
Merge master into haskell-updates
2024-01-27 00:11:54 +00:00
Maximilian Bosch
a13451fa58
Merge pull request #283816 from trofi/whisper-gcc-13-fix
...
whisper: fix `gcc-13` build failure
2024-01-26 23:11:50 +01:00
Pierre Roux
4ce414bbe4
coq: 8.19+rc1 -> 8.19.0
2024-01-26 19:35:30 +01:00
R. Ryantm
a68fcf325d
workcraft: 3.4.1 -> 3.4.2
2024-01-26 12:41:46 +00:00
R. Ryantm
26cdc416a4
magic-vlsi: 8.3.456 -> 8.3.459
2024-01-26 10:29:45 +00:00
github-actions[bot]
acd0181532
Merge master into haskell-updates
2024-01-26 00:12:48 +00:00
R. Ryantm
f61c011407
ants: 2.5.0 -> 2.5.1
2024-01-26 01:12:12 +01:00
Sergei Trofimovich
4508debde5
whisper: enable parallel building
2024-01-25 19:27:12 +00:00
Sergei Trofimovich
cbd45bf5a3
whisper: fix gcc-13 build failure
...
Without the change build fails on `master` against `gcc-13` as
https://hydra.nixos.org/build/246505636 :
mapper/../common/defs.h:53:9: error: 'uint32_t' does not name a type
53 | typedef uint32_t ref_pos_t;
| ^~~~~~~~
mapper/../common/defs.h:35:1: note: 'uint32_t' is defined in header '<cstdint>'; did you forget to '#include <cstdint>'?
34 | #include <string>
+++ |+#include <cstdint>
2024-01-25 19:24:52 +00:00
Mauricio Collares
a3c9b3b678
sage: import scipy 1.12 upgrade patch
2024-01-25 19:06:47 +01:00
Vladimír Čunát
3f23d91f84
Merge branch 'master' into haskell-updates
2024-01-25 15:03:20 +01:00
github-actions[bot]
8c2ba7797a
Merge master into staging-next
2024-01-25 12:01:19 +00:00
Weijia Wang
4fddc9be4e
Merge pull request #283674 from r-ryantm/auto-update/marvin
...
marvin: 23.12.0 -> 23.17.0
2024-01-25 10:07:51 +01:00
Vladimír Čunát
24db4fbcb8
octopus: fixup build by adding which
...
https://hydra.nixos.org/build/247364187/nixlog/1/tail
2024-01-25 09:12:08 +01:00
Weijia Wang
5c4784cd2f
marvin: pin openjdk17
2024-01-25 08:59:41 +01:00
R. Ryantm
8deb9a0679
marvin: 23.12.0 -> 23.17.0
2024-01-25 05:45:33 +00:00
Weijia Wang
b65f34650b
fritzing: 1.0.1 -> 1.0.2
2024-01-25 06:33:33 +01:00
Weijia Wang
826606889e
Merge pull request #264092 from muscaln/fritzing
...
fritzing: unstable-2022-07-01 -> 1.0.1
2024-01-25 05:57:12 +01:00
Mustafa Çalışkan
cdb0810651
fritzing: unstable-2022-07-01 -> 1.0.1
2024-01-25 04:27:37 +01:00
github-actions[bot]
395b0f9a10
Merge master into haskell-updates
2024-01-25 00:13:22 +00:00
Mauricio Collares
31787848d1
Merge pull request #283288 from r-ryantm/auto-update/jmol
...
jmol: 16.1.47 -> 16.1.49
2024-01-24 20:51:02 +01:00
Mauricio Collares
435535d968
Merge pull request #283322 from collares/sage-10.2
...
sage: 10.0 -> 10.2
2024-01-24 18:26:47 +01:00
R. Ryantm
fbc1452b83
nnpdf: 4.0.7 -> 4.0.8
2024-01-24 12:00:37 -05:00
Nick Cao
4a7d1eb86e
Merge pull request #283425 from r-ryantm/auto-update/stacks
...
stacks: 2.65 -> 2.66
2024-01-24 10:08:34 -05:00
Mauricio Collares
d37074d8b4
sage, sageWithDoc: 10.0 -> 10.2
2024-01-24 15:26:55 +01:00
R. Ryantm
bae468a718
igv: 2.17.0 -> 2.17.1
2024-01-24 08:42:17 +00:00
R. Ryantm
6d5b82a080
stacks: 2.65 -> 2.66
2024-01-24 07:54:36 +00:00
sternenseemann
c0e251a92c
Merge remote-tracking branch 'origin/master' into haskell-updates
2024-01-23 21:05:45 +01:00
R. Ryantm
e30623ef16
jmol: 16.1.47 -> 16.1.49
2024-01-23 18:41:36 +00:00
Weijia Wang
8007117f79
Merge pull request #282666 from wegank/ebtks-refactor
...
ebtks: fix build on darwin, refactor
2024-01-23 18:23:42 +01:00
Naïm Favier
a14ed69069
Merge pull request #281821 from jvanbruegge/naproche-ghc96
...
naproche: unstable-2023-07-11 -> unstable-2024-01-18
2024-01-23 11:30:04 +01:00
Nick Cao
2ec555b4cb
Merge pull request #282959 from TomaSajt/simulide
...
simulide_1_1_0: use corrected upstream source
2024-01-22 16:57:57 -05:00
TomaSajt
62204e05fa
simulide_1_1_0: use corrected upstream source
2024-01-22 18:49:22 +01:00
Nick Cao
2a5f24096d
Merge pull request #282916 from r-ryantm/auto-update/eigenmath
...
eigenmath: unstable-2023-12-31 -> unstable-2024-01-22
2024-01-22 11:21:18 -05:00
markuskowa
e6e941f341
Merge pull request #282890 from sheepforce/molcas-fix
...
openmolcas: fix pyparsing >= 3.11 compatibility
2024-01-22 15:54:31 +01:00
R. Ryantm
11e3813729
eigenmath: unstable-2023-12-31 -> unstable-2024-01-22
2024-01-22 14:34:43 +00:00
Phillip Seeber
9ad625fdfa
openmolcas: fix pyparsing >= 3.11 compatibility
2024-01-22 15:09:57 +01:00
Mario Rodas
1e9b4f7f65
Merge pull request #282489 from r-ryantm/auto-update/nanovna-saver
...
nanovna-saver: 0.6.0 -> 0.6.3
2024-01-22 06:59:25 -05:00
R. Ryantm
4765bc88c6
bada-bib: 0.8.0 -> 0.8.1
2024-01-22 02:16:27 +00:00
Fabian Affolter
8639095604
Merge pull request #282534 from fabaff/cwltool-fix
...
cwltool: 3.1.20230213100550 -> 3.1.20240112164112
2024-01-21 23:46:45 +01:00
Weijia Wang
54f104a929
inormalize: fix build on darwin
2024-01-21 23:26:55 +01:00
Weijia Wang
07ae660f55
n3: fix build on darwin
2024-01-21 23:22:54 +01:00
Weijia Wang
abb97f6022
ebtks: migrate to by-name, rename from EBTKS
2024-01-21 19:37:48 +01:00
Gaetan Lepage
a9f8122a9e
mujoco: 3.1.0 -> 3.1.1
...
Changelog: https://github.com/google-deepmind/mujoco/releases/tag/3.1.1
2024-01-21 12:24:04 +01:00
Fabian Affolter
48433b4d36
cwltool: 3.1.20230213100550 -> 3.1.20240112164112
...
Diff: https://github.com/common-workflow-language/cwltool/compare/refs/tags/3.1.20230213100550...3.1.20240112164112
Changelog: https://github.com/common-workflow-language/cwltool/releases/tag/3.1.20240112164112
2024-01-21 10:32:48 +01:00
R. Ryantm
b9d0190c54
nanovna-saver: 0.6.0 -> 0.6.3
2024-01-21 05:17:49 +00:00
superherointj
41ad0e477d
SPAdes: fix build
...
Fixes #282372
Co-authored-by: @wegank
2024-01-20 15:28:48 -03:00
Weijia Wang
c79898ec62
Merge pull request #278851 from r-ryantm/auto-update/gwyddion
...
gwyddion: 2.64 -> 2.65
2024-01-20 10:35:52 +01:00
Weijia Wang
459b3a911e
Merge pull request #279875 from r-ryantm/auto-update/magic-vlsi
...
magic-vlsi: 8.3.454 -> 8.3.456
2024-01-20 05:34:55 +01:00
Phillip Seeber
d17de8a1f1
molden: disable parallel building
2024-01-19 17:17:06 +01:00
R. Ryantm
54c63ff613
eggnog-mapper: 2.1.10 -> 2.1.12
2024-01-18 19:17:47 +00:00
Nick Cao
c60431f4df
Merge pull request #281649 from TomaSajt/simulide
...
simulide: add generic builder for other versions
2024-01-18 13:12:40 -05:00
Jan van Brügge
3702ba16ba
naproche: unstable-2023-07-11 -> unstable-2024-01-18
2024-01-18 17:00:55 +00:00
TomaSajt
bf4060fe24
simulide_1_1_0: init at 1.1.0-RC1
2024-01-18 17:42:58 +01:00
TomaSajt
28790f71ab
simulide_1_0_0: init at 1.0.0-SR2, set simulide alias to simulide_1_0_0
2024-01-18 17:40:22 +01:00
TomaSajt
29ca5691cf
simulide: add generic builder, set simulide alias to simulide_0_4_15
2024-01-18 17:36:31 +01:00
