660 Commits

Author	SHA1	Message	Date
Mario Rodas	c8fb7191ad	Merge pull request #143541 from r-ryantm/auto-update/bcftools ... bcftools: 1.13 -> 1.14	2021-11-14 21:14:30 -05:00
Bruno Bzeznik	4e5a245894	obitools3: removed useless python restriction	2021-11-08 07:51:48 +01:00
Felix Buehler	b52ab3b712	pkgs/applications: rename name to pname&version part 2	2021-11-07 14:53:06 +01:00
Justin Bedő	a5ac0a33a7	Merge pull request #144529 from r-ryantm/auto-update/picard-tools ... picard-tools: 2.26.3 -> 2.26.4	2021-11-04 07:19:02 +11:00
R. Ryantm	509a8c298f	picard-tools: 2.26.3 -> 2.26.4	2021-11-03 19:57:00 +00:00
Bruno Bzeznik	0d9ec2d3f0	obitools3: fix build on aarch64 + formatting	2021-11-03 11:59:05 +02:00
R. Ryantm	6282512ef7	dcm2niix: 1.0.20210317 -> 1.0.20211006	2021-10-29 09:34:20 +00:00
R. Ryantm	5f6bd8187b	bcftools: 1.13 -> 1.14	2021-10-29 02:49:14 +00:00
Artturi	493094366b	Merge pull request #142164 from jbedo/last ... last: 1179 -> 1256	2021-10-22 08:37:19 +03:00
Justin Bedő	4e83abb0cb	Merge pull request #142199 from jbedo/picard ... picard-tools: 2.26.2 -> 2.26.3	2021-10-22 14:36:28 +11:00
Justin Bedo	f120d4daf4	picard-tools: 2.26.2 -> 2.26.3	2021-10-19 21:24:56 +11:00
Justin Bedo	08489c40ab	fastp: 0.22.0 -> 0.23.1	2021-10-19 21:09:05 +11:00
Justin Bedo	f7414542d0	last: 1179 -> 1256	2021-10-19 13:23:14 +11:00
Justin Bedo	02a1a2b3c8	samtools: 1.11 -> 1.13	2021-10-12 10:19:36 +11:00
figsoda	3109ff5765	treewide: avoid use of lib.optional with list in inputs	2021-10-04 13:02:42 -04:00
R. RyanTM	5becb56f71	star: 2.7.8a -> 2.7.9a	2021-09-24 10:37:28 +08:00
Bobby Rong	c25465873c	Merge pull request #138022 from natsukium/blast/update ... blast: 2.11.0 -> 2.12.0	2021-09-23 14:48:35 +08:00
Guillaume Girol	4bc83aaffa	Merge pull request #136489 from ehmry/nimPackages ... nimpackages / buildNimPackage	2021-09-22 18:35:38 +00:00
figsoda	0e575a459e	Merge pull request #137974 from r-ryantm/auto-update/bowtie ... bowtie: 1.3.0 -> 1.3.1	2021-09-17 22:52:43 -04:00
Bobby Rong	12d38c57c3	Merge pull request #134133 from Kranzes/auto-update/SPAdes ... SPAdes: 3.15.2 -> 3.15.3	2021-09-16 17:09:24 +08:00
Tomoya Otabi	1e9bd43214	blast: 2.11.0 -> 2.12.0	2021-09-15 15:33:44 +00:00
R. RyanTM	7bf7c9b92b	bowtie: 1.3.0 -> 1.3.1	2021-09-15 07:35:44 +00:00
R. RyanTM	e676fdcb90	picard-tools: 2.26.0 -> 2.26.2	2021-09-14 19:53:25 +00:00
adisbladis	fcf5397793	Merge pull request #135905 from dukc/secondDmd2097 ... D compiler update	2021-09-13 11:36:55 -05:00
Sandro	205c2ada66	Merge pull request #136967 from bzizou/obitools	2021-09-11 16:27:18 +02:00
Bruno Bzeznik	3bd1b0ed0d	obitools3: 3.0.0-beta14 -> 3.0.1b11	2021-09-07 09:38:41 +02:00
Emery Hemingway	323c503cba	mosdepth: convert to buildNimPackage	2021-09-05 11:20:02 +02:00
Ate Eskola	b2a39efa57	sambamba 0.8.0 -> 0.8.1	2021-08-31 12:37:49 +03:00
davidak	1b78608c69	Merge pull request #135516 from bzizou/stacks ... stacks: Changed license to gpl3Plus	2021-08-26 03:50:48 +02:00
Justin Bedo	b1b57ec04e	fastp: 0.20.1 -> 0.22.0	2021-08-25 09:52:07 +10:00
Ryan Mulligan	8c2e2ffe95	Merge pull request #135212 from r-ryantm/auto-update/stacks ... stacks: 2.55 -> 2.59	2021-08-24 09:03:17 -07:00
Bruno Bzeznik	a240cd9f4f	stacks: Changed license to gpl3Plus	2021-08-24 09:47:24 +02:00
Ryan Mulligan	997f4452a4	Merge pull request #135255 from r-ryantm/auto-update/picard-tools ... picard-tools: 2.25.7 -> 2.26.0	2021-08-23 20:56:38 -07:00
Jörg Thalheim	11e5c3ac4b	bowtie: fix homepage	2021-08-22 16:08:28 +02:00
R. RyanTM	742cd80071	picard-tools: 2.25.7 -> 2.26.0	2021-08-22 10:47:38 +00:00
R. RyanTM	67c1256ddd	stacks: 2.55 -> 2.59	2021-08-22 07:08:39 +00:00
Sebastián Mancilla	8f94a33b38	treewide: ensure pre/post phase hooks are strings ... Some derivations use lib.optional or lib.optionals when setting pre/post phase hooks. Ensure the proper lib.optionalString is used.	2021-08-20 19:08:42 -04:00
Ryan Mulligan	ad59a67ec0	Merge pull request #134444 from r-ryantm/auto-update/picard-tools ... picard-tools: 2.25.1 -> 2.25.7	2021-08-17 16:47:31 -07:00
R. RyanTM	1a23a8bb9e	picard-tools: 2.25.1 -> 2.25.7	2021-08-17 13:50:42 +00:00
Ilan Joselevich	9f5b3fafa0	SPAdes: 3.15.2 -> 3.15.3	2021-08-15 11:12:42 +03:00
R. RyanTM	5693a554e2	minimap2: 2.17 -> 2.22	2021-08-14 15:55:35 +00:00
Artturi	e69c8ea78e	Merge pull request #111691 from jbedo/bowtie2 ... bowtie2: resolve missing runtime dependencies	2021-08-07 04:03:47 +03:00
Sandro	04b5e62d8d	Merge pull request #132468 from Stunkymonkey/applications-phases1	2021-08-05 09:37:57 +02:00
Felix Buehler	be219752d2	picard-tools: deprecate phases	2021-08-03 00:04:29 +02:00
Felix Buehler	4b883542fe	varscan: deprecate phases	2021-08-03 00:04:16 +02:00
Artturin	f173c77476	perlPackages.ImageMagick: rename from perlPackages.PerlMagick	2021-08-02 20:05:00 +03:00
Sandro	1524f36b3e	Merge pull request #131627 from jbedo/mosdepth ... mosdepth: 0.3.1 -> 0.3.2	2021-07-29 13:56:24 +00:00
Sandro Jäckel	cebfbdff37	mrbayes: 3.2.7 -> 3.2.7a	2021-07-27 14:30:23 +02:00
Sandro Jäckel	108ad942fb	mrbayes: modernize	2021-07-27 11:53:51 +02:00
Justin Bedo	d885373469	mosdepth: 0.3.1 -> 0.3.2	2021-07-27 09:52:22 +10:00