53 Commits

Author	SHA1	Message	Date
R. Ryantm	6643d56edb	snakemake: 8.4.8 -> 8.4.12	2024-02-23 12:38:33 -05:00
R. Ryantm	2444fc7fa5	snakemake: 8.4.4 -> 8.4.8	2024-02-16 21:15:11 +00:00
R. Ryantm	0b9427cf71	snakemake: 8.3.2 -> 8.4.4	2024-02-06 18:59:24 -05:00
R. RyanTM	ec66ff787e	snakemake: 8.2.1 -> 8.3.2 (#284218)	2024-01-27 09:26:23 -05:00
Dmitry Kalinkin	346cb05310	snakemake: 8.0.1 -> 8.2.1	2024-01-17 16:28:55 -05:00
Dmitry Kalinkin	7ff81781f2	snakemake: 7.32.4 -> 8.0.1	2023-12-21 14:32:05 -05:00
Renato Garcia	3c87cb32f0	snakemake: 7.29.0 -> 7.32.4 (#266543)	2023-11-10 06:48:45 -05:00
Theodore Ni	1af33d4653	snakemake: fix broken source hash	2023-07-02 16:50:09 -07:00
nviets	4bb4d449a7	snakemake: 7.25.3 -> 7.29.0 (#240263) ... Co-authored-by: nviets <nathan.viets@gmail.com>	2023-06-28 17:09:10 +02:00
Renato Garcia	9d1a27e2fd	snakemake: 7.14.2 -> 7.25.3 (#230524)	2023-05-08 02:05:40 -04:00
Guillaume Girol	33afbf39f6	treewide: switch to nativeCheckInputs ... checkInputs used to be added to nativeBuildInputs. Now we have nativeCheckInputs to do that instead. Doing this treewide change allows to keep hashes identical to before the introduction of nativeCheckInputs.	2023-01-21 12:00:00 +00:00
Fabian Affolter	7d3c53e6d1	snakemake: rename GitPython	2022-12-05 21:53:53 +01:00
R. Ryantm	f28b6e5468	snakemake: 7.14.1 -> 7.14.2	2022-09-27 19:16:23 -04:00
R. Ryantm	fe2504c61b	snakemake: 7.14.0 -> 7.14.1	2022-09-26 23:13:22 -04:00
R. Ryantm	914100fd45	snakemake: 7.12.1 -> 7.14.0	2022-09-08 09:57:07 -04:00
R. Ryantm	7f3ad42166	snakemake: 7.12.0 -> 7.12.1	2022-08-13 16:16:11 -04:00
R. Ryantm	4c3caca96d	snakemake: 7.9.0 -> 7.12.0	2022-07-31 11:06:29 -04:00
R. Ryantm	7a5b52ff26	snakemake: 7.8.5 -> 7.9.0	2022-07-21 15:24:14 +00:00
R. RyanTM	200d8c500a	snakemake: 7.8.3 -> 7.8.5 (#179874)	2022-07-04 12:24:26 -04:00
R. Ryantm	671aeb2769	snakemake: 7.8.2 -> 7.8.3	2022-06-21 19:01:53 +00:00
R. Ryantm	acf23020f0	snakemake: 7.8.1 -> 7.8.2	2022-06-09 19:49:56 +00:00
R. Ryantm	e9fb739e59	snakemake: 7.8.0 -> 7.8.1	2022-06-02 01:20:40 +00:00
R. RyanTM	7a54d237e0	snakemake: 7.7.0 -> 7.8.0 (#174592)	2022-05-30 10:51:36 -04:00
R. Ryantm	a52b64015a	snakemake: 7.6.2 -> 7.7.0	2022-05-17 16:18:18 +00:00
R. Ryantm	5b55f851ac	snakemake: 7.6.1 -> 7.6.2	2022-05-07 16:16:09 +00:00
R. Ryantm	166b1378fe	snakemake: 7.5.0 -> 7.6.1	2022-05-04 16:06:44 +00:00
Fabian Affolter	8b176291d7	snakemake: 6.15.5 -> 7.5.0	2022-05-01 13:02:10 +02:00
Daniel Wheeler	4befe7a89f	snakemake: 6.10.0 -> 6.15.5 (#159026) ... Fetch from GitHub rather than PyPI so tests are included.	2022-02-17 18:06:23 -05:00
Dmitry Kalinkin	49d19b7945	snakemake: 6.7.0 -> 6.10.0	2021-10-24 17:49:14 -04:00
Dmitry Kalinkin	b8c5c06aab	snakemake: 6.6.1 -> 6.7.0	2021-08-28 02:18:38 -04:00
Sandro Jäckel	b4099137b1	pythonPackages: deprecate ConfigArgParse alias	2021-07-21 13:32:54 +02:00
Dmitry Kalinkin	3a79b1fece	snakemake: 6.5.3 -> 6.6.1	2021-07-19 16:22:36 -04:00
Dmitry Kalinkin	a93f2af20b	snakemake: add missing optional dependenices ... These are needed to generate reports	2021-07-19 16:19:27 -04:00
Dmitry Kalinkin	45bed6d99f	snakemake: 6.5.0 -> 6.5.3	2021-07-11 10:40:09 -04:00
Dmitry Kalinkin	e3678ae8a6	snakemake: 6.0.5 -> 6.5.0	2021-06-24 11:36:26 -04:00
Sandro Jäckel	d6ff646b3f	pythonPackages.smart_open: rename to smart-open	2021-05-22 15:02:50 -07:00
Dmitry Kalinkin	8887f4655e	snakemake: 5.28.0 -> 6.0.5	2021-03-26 18:32:26 -04:00
Pavol Rusnak	a6ce00c50c	treewide: remove stdenv where not needed	2021-01-25 18:31:47 +01:00
Profpatsch	4a7f99d55d	treewide: with stdenv.lib; in meta -> with lib; ... Part of: https://github.com/NixOS/nixpkgs/issues/108938 meta = with stdenv.lib; is a widely used pattern. We want to slowly remove the `stdenv.lib` indirection and encourage people to use `lib` directly. Thus let’s start with the meta field. This used a rewriting script to mostly automatically replace all occurances of this pattern, and add the `lib` argument to the package header if it doesn’t exist yet. The script in its current form is available at https://cs.tvl.fyi/depot@2f807d7f141068d2d60676a89213eaa5353ca6e0/-/blob/users/Profpatsch/nixpkgs-rewriter/default.nix	2021-01-11 10:38:22 +01:00
Dmitry Kalinkin	68e06c19d6	snakemake: 5.19.3 -> 5.28.0	2020-11-17 17:37:35 -05:00
Dmitry Kalinkin	eb121e0901	snakemake: 5.17.0 -> 5.19.3	2020-07-02 23:36:20 -04:00
R. RyanTM	c1b7c7e87c	snakemake: 5.16.0 -> 5.17.0 (#88766)	2020-05-24 13:32:14 -04:00
R. RyanTM	92d970c766	snakemake: 5.15.0 -> 5.16.0 (#87496)	2020-05-10 10:09:53 -04:00
Renato Garcia	22133c6bf3	snakemake: 5.13.0 -> 5.15.0 (#85913)	2020-04-25 09:19:54 -04:00
Konrad Borowski	f527f9db3a	snakemake: update homepage link to use HTTPS	2020-04-24 19:44:59 -07:00
R. RyanTM	cff5adc2fb	snakemake: 5.10.0 -> 5.13.0 (#83839)	2020-03-31 00:39:00 -04:00
Dmitry Kalinkin	68db99ad97	snakemake: 5.9.1 -> 5.10.0	2020-03-14 15:58:24 -07:00
R. RyanTM	a94c66bc88	snakemake: 5.8.1 -> 5.9.1	2020-01-30 09:44:26 +00:00
R. RyanTM	13c757e69c	snakemake: 5.7.4 -> 5.8.1 (#74637)	2019-12-09 20:47:24 +01:00
Dmitry Kalinkin	93ee8095b0	snakemake: 5.4.4 -> 5.7.4 (#72929) ... (#72929)	2019-11-13 00:46:56 +01:00