R. RyanTM
5becb56f71
star: 2.7.8a -> 2.7.9a
2021-09-24 10:37:28 +08:00
Ryan Burns
40299257cc
Merge branch 'master' into staging-next
2021-09-23 18:43:00 -07:00
Naïm Favier
b2391a51d2
coq: add desktop file for coqide
2021-09-23 14:39:50 +02:00
Sandro
9f5d7fa703
Merge pull request #136526 from smancill/shogun-remove-svmlight
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shogun: remove non-distributable SVMlight code
2021-09-23 14:11:12 +02:00
Ryan Burns
813c400edc
cntk: fix build with protobuf 3.18+
2021-09-23 02:16:17 -07:00
Bobby Rong
c25465873c
Merge pull request #138022 from natsukium/blast/update
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blast: 2.11.0 -> 2.12.0
2021-09-23 14:48:35 +08:00
Ryan Burns
e12802213e
caffe: fix build with protobuf 3.18+
2021-09-22 21:57:13 -07:00
github-actions[bot]
796a5df129
Merge master into staging-next
2021-09-23 00:01:50 +00:00
Sandro
1d180608da
Merge pull request #138968 from hjones2199/kstars355
2021-09-22 22:32:28 +02:00
Guillaume Girol
4bc83aaffa
Merge pull request #136489 from ehmry/nimPackages
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nimpackages / buildNimPackage
2021-09-22 18:35:38 +00:00
Hunter Jones
3ba268b73d
kstars: 3.5.4 -> 3.5.5
2021-09-22 11:35:38 -05:00
markuskowa
b4f1a1338f
Merge pull request #138512 from r-burns/csdp
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[staging-next] Revert "csdp: move gfortran to nativeBuildInputs"
2021-09-20 12:18:40 +02:00
Alyssa Ross
e2bb7997c4
Merge remote-tracking branch 'nixpkgs/master' into staging-next
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Conflicts:
nixos/doc/manual/release-notes/rl-2111.section.md
2021-09-19 17:08:00 +00:00
Ryan Burns
b23afbb866
Revert "csdp: move gfortran to nativeBuildInputs"
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We are not using gfortran as a native binary; we are using its lib.
Fixes build on darwin.
This reverts commit eabbf45b60
2021-09-19 02:35:27 -07:00
Bobby Rong
0fd8cc3908
treewide: switch from pantheon.maintainers to lib.teams.pantheon
2021-09-18 23:07:00 +08:00
github-actions[bot]
263bdbdad4
Merge master into staging-next
2021-09-18 06:01:19 +00:00
figsoda
0e575a459e
Merge pull request #137974 from r-ryantm/auto-update/bowtie
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bowtie: 1.3.0 -> 1.3.1
2021-09-17 22:52:43 -04:00
Sebastián Mancilla
e810fad47a
shogun: remove non-distributable SVMlight code
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SVMlight uses a non-standard license [0] that doesn't allow distribution
without the author's permission:
> The software must not be modified and distributed without prior permission of the author.
So remove all code related to it when building the binary package.
Use upstream's own script to do it (which they use to create and
distribute their own Debian package), with a few fixes.
There is still the option of building from source with SVMlight enabled
with an override that sets the withSvmLight parameter.
If SVMlight is enabled set the license to unfree. Also fix the
deprecated gpl3 license to gpl3Plus.
[0]: https://github.com/shogun-toolbox/shogun/blob/shogun_6.1.4/doc/license/LICENSE_SVMlight.md
2021-09-17 15:04:34 -03:00
github-actions[bot]
a21275cdae
Merge master into staging-next
2021-09-17 18:01:14 +00:00
figsoda
715d551a10
Merge pull request #136637 from L-as/alliance
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alliance: 5.1.1 -> unstable-2020-12-04
2021-09-17 12:47:55 -04:00
Las Safin
33390f6bc7
alliance: 5.1.1 -> unstable-2021-09-15
2021-09-17 16:17:23 +00:00
github-actions[bot]
2ad7b248e6
Merge staging-next into staging
2021-09-17 00:02:15 +00:00
Robert Scott
c1dac4490e
Merge pull request #138061 from Stunkymonkey/switch-fetchFromGitLab
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quantum-espresso,postgresql11Packages.pg_ed25519: switch to fetchFromGitlab
2021-09-16 23:53:23 +01:00
github-actions[bot]
85bd312fb6
Merge staging-next into staging
2021-09-16 12:02:04 +00:00
markuskowa
228e15e7cb
Merge pull request #138123 from markuskowa/fix-octopus
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octopus: add CPU optimization flags
2021-09-16 13:25:47 +02:00
Markus Kowalewski
bd69f3d627
octopus: add CPU optimization flags
2021-09-16 12:53:47 +02:00
Bobby Rong
12d38c57c3
Merge pull request #134133 from Kranzes/auto-update/SPAdes
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SPAdes: 3.15.2 -> 3.15.3
2021-09-16 17:09:24 +08:00
Bobby Rong
77f92d23c7
Merge pull request #137608 from lopsided98/qgroundcontrol-update
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qgroundcontrol: 4.1.3 -> 4.1.4
2021-09-16 14:18:28 +08:00
Felix Buehler
64bac8e874
quantum-espresso: switch to fetchFromGitLab
2021-09-15 23:13:57 +02:00
github-actions[bot]
1c625bf844
Merge staging-next into staging
2021-09-15 18:01:59 +00:00
Dmitry Kalinkin
d8ed39b309
Merge pull request #135525 from veprbl/pr/open_memstream_fmemopen_darwin_fix
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Add implemetations of open_memstream/fmemopen to be used on BSDs
2021-09-15 11:49:55 -04:00
Dmitry Kalinkin
84f408f206
Merge pull request #136016 from veprbl/pr/root_6_24_04
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root: 6.24.02 -> 6.24.06
2021-09-15 11:35:07 -04:00
Tomoya Otabi
1e9bd43214
blast: 2.11.0 -> 2.12.0
2021-09-15 15:33:44 +00:00
github-actions[bot]
24a34e5706
Merge staging-next into staging
2021-09-15 12:01:34 +00:00
Michael Raskin
47eaf6727b
Merge pull request #137876 from r-ryantm/auto-update/opensmt
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opensmt: 2.1.0 -> 2.1.1
2021-09-15 09:03:33 +00:00
R. RyanTM
7bf7c9b92b
bowtie: 1.3.0 -> 1.3.1
2021-09-15 07:35:44 +00:00
github-actions[bot]
636ebe3a72
Merge staging-next into staging
2021-09-15 06:01:54 +00:00
Justin Bedő
9c4f65db4b
Merge pull request #137884 from r-ryantm/auto-update/picard-tools
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picard-tools: 2.26.0 -> 2.26.2
2021-09-15 04:59:06 +00:00
R. RyanTM
e676fdcb90
picard-tools: 2.26.0 -> 2.26.2
2021-09-14 19:53:25 +00:00
R. RyanTM
1c9cbe8a05
opensmt: 2.1.0 -> 2.1.1
2021-09-14 18:44:37 +00:00
github-actions[bot]
95f24a8a57
Merge staging-next into staging
2021-09-14 18:01:40 +00:00
R. RyanTM
504529d628
horizon-eda: 2.0.0 -> 2.1.0
2021-09-14 10:46:32 +00:00
github-actions[bot]
04e48fbe4f
Merge staging-next into staging
2021-09-13 18:01:51 +00:00
adisbladis
fcf5397793
Merge pull request #135905 from dukc/secondDmd2097
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D compiler update
2021-09-13 11:36:55 -05:00
Ben Wolsieffer
03111112cc
qgroundcontrol: 4.1.3 -> 4.1.4
2021-09-13 00:11:37 -04:00
github-actions[bot]
dfd1161f35
Merge staging-next into staging
2021-09-13 00:02:22 +00:00
Sandro
11e504567d
Merge pull request #137454 from r-ryantm/auto-update/MAVProxy
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mavproxy: 1.8.41 -> 1.8.42
2021-09-13 00:26:51 +02:00
github-actions[bot]
fef6f602e6
Merge staging-next into staging
2021-09-12 18:01:50 +00:00
Daniël de Kok
6f2ce2a65e
treewide: remove danieldk as maintainer from a set of packages
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I currently do not have much time to work on nixpkgs. Remove
myself as a maintainer from a bunch of packages to avoid that
people are waiting on me for a review.
2021-09-12 14:42:12 +00:00
Sandro
83eef43893
Merge pull request #135906 from yl3dy/xoscope
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xoscope: 2.0 -> 2.3
2021-09-12 16:15:41 +02:00
Sandro Jäckel
e4a49641ae
openems: fix eval
2021-09-12 14:45:44 +02:00
R. RyanTM
2464f7ae0a
mavproxy: 1.8.41 -> 1.8.42
2021-09-12 00:36:50 +00:00
github-actions[bot]
d370d9ee99
Merge staging-next into staging
2021-09-11 18:01:51 +00:00
Sandro
22d08e62d9
Merge pull request #137382 from Xitian9/geogebra
2021-09-11 18:33:09 +02:00
Sandro
790559422e
Merge pull request #136823 from r-ryantm/auto-update/MAVProxy
2021-09-11 18:08:34 +02:00
Sandro
205c2ada66
Merge pull request #136967 from bzizou/obitools
2021-09-11 16:27:18 +02:00
Stephen Morgan
28b5133cce
geogebra: 5-0-644-0 -> 5-0-662-0
2021-09-11 23:49:13 +10:00
github-actions[bot]
6188f2aeeb
Merge staging-next into staging
2021-09-11 06:01:28 +00:00
Guillaume Girol
1065a41d8d
Merge pull request #136369 from veprbl/pr/root5_gcc10_fix
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root5: fix for gcc10
2021-09-10 19:54:29 +00:00
Hunter Jones
bc19f8dd1e
kstars: 3.5.3 -> 3.5.4
2021-09-07 13:04:31 -05:00
Bruno Bzeznik
3bd1b0ed0d
obitools3: 3.0.0-beta14 -> 3.0.1b11
2021-09-07 09:38:41 +02:00
R. RyanTM
a7277dd058
mavproxy: 1.8.40 -> 1.8.41
2021-09-06 00:37:54 +00:00
Emery Hemingway
323c503cba
mosdepth: convert to buildNimPackage
2021-09-05 11:20:02 +02:00
Dmitry Kalinkin
0ec2acf51f
root: build with -Dimt=ON
2021-09-03 12:41:16 -04:00
Dmitry Kalinkin
95b2d74bc5
root: re-enable unvendored LLVM
2021-09-03 12:41:16 -04:00
Dmitry Kalinkin
aedfb59c87
root: 6.24.02 -> 6.24.06
2021-09-03 12:41:04 -04:00
Markus Kowalewski
25ebbde3e1
sherpa: move gfortran to nativeBuildInputs
2021-09-03 13:33:32 +02:00
Markus Kowalewski
01ba299e53
elmerfem: move gfortran to nativeBuildInputs
2021-09-03 13:33:32 +02:00
Markus Kowalewski
9259691d58
dl-poly-classic: move gfortran to nativeBuildInputs
2021-09-03 13:33:32 +02:00
Markus Kowalewski
35a17a0cfe
scilab: move gfortran to nativeBuildInputs
2021-09-03 13:33:32 +02:00
Markus Kowalewski
74443bc786
jags: move gfortran to nativeBuildInputs
2021-09-03 13:33:31 +02:00
Markus Kowalewski
eabbf45b60
csdp: move gfortran to nativeBuildInputs
2021-09-03 13:33:31 +02:00
Markus Kowalewski
d5c38a0d5c
siesta: move gfortran to nativeBuildInputs
2021-09-03 13:33:31 +02:00
Markus Kowalewski
9eb814fd96
quantum-espresso: move gfortran to nativeBuildInputs
2021-09-03 13:33:31 +02:00
Markus Kowalewski
eecadd3f3b
openmolcas: move gfortran to nativeBuildInputs
2021-09-03 13:33:31 +02:00
Dmitry Kalinkin
0a312a356c
root5: fix for gcc10
2021-09-01 07:14:56 -04:00
Ate Eskola
b2a39efa57
sambamba 0.8.0 -> 0.8.1
2021-08-31 12:37:49 +03:00
Michael Raskin
df3f3ccc6d
Merge pull request #136250 from collares/sage-networkx
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sage: adapt tests for networkx 2.6
2021-08-31 07:52:29 +00:00
Mauricio Collares
7194273c77
sage: adapt tests for networkx 2.6
2021-08-30 22:43:24 -03:00
schotts-fired
9ec4fb0cd1
R: add memory profiling compile option
2021-08-30 18:24:42 +02:00
davidak
fe2d3b56e7
Merge pull request #136014 from veprbl/pr/snakemake_6_7_0
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snakemake: 6.6.1 -> 6.7.0
2021-08-29 10:54:01 +02:00
Dmitry Kalinkin
b8c5c06aab
snakemake: 6.6.1 -> 6.7.0
2021-08-28 02:18:38 -04:00
Diep Pham
ac0b44b1ee
dcmtk: support darwin platform ( #136005 )
2021-08-28 02:00:18 -04:00
Alexander Kiselyov
accd81c1b6
xoscope: fixed buildInputs
2021-08-27 17:49:54 +03:00
Alexander Kiselyov
27dcb4bd31
xoscope: 2.0 -> 2.3
2021-08-26 22:21:17 +03:00
davidak
1b78608c69
Merge pull request #135516 from bzizou/stacks
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stacks: Changed license to gpl3Plus
2021-08-26 03:50:48 +02:00
Justin Bedo
b1b57ec04e
fastp: 0.20.1 -> 0.22.0
2021-08-25 09:52:07 +10:00
Sandro
73ad08e512
Merge pull request #135481 from kzvi/lean-update
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lean: 3.31.0 -> 3.32.1
2021-08-25 00:43:28 +02:00
Dmitry Kalinkin
9c8f6efc55
xfitter: enable WITH_YAML support on darwin
2021-08-24 18:21:41 -04:00
Ryan Mulligan
8c2e2ffe95
Merge pull request #135212 from r-ryantm/auto-update/stacks
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stacks: 2.55 -> 2.59
2021-08-24 09:03:17 -07:00
Bruno Bzeznik
a240cd9f4f
stacks: Changed license to gpl3Plus
2021-08-24 09:47:24 +02:00
Ryan Mulligan
997f4452a4
Merge pull request #135255 from r-ryantm/auto-update/picard-tools
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picard-tools: 2.25.7 -> 2.26.0
2021-08-23 20:56:38 -07:00
kzvi
befe89f3d7
lean: 3.31.0 -> 3.32.1
2021-08-23 15:43:00 -07:00
davidak
d18866b1c2
nasc: 0.7.5 -> 0.8.0
2021-08-23 23:23:52 +02:00
Artturi
f2f1718aae
Merge pull request #135404 from r-ryantm/auto-update/workcraft
2021-08-23 17:28:09 +03:00
Artturi
55fdaafe15
Merge pull request #135398 from r-ryantm/auto-update/verifast
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verifast: 19.12 -> 21.04
2021-08-23 17:25:35 +03:00
R. RyanTM
6b086631c6
workcraft: 3.3.2 -> 3.3.5
2021-08-23 08:01:40 +00:00
R. RyanTM
a73fc504b7
verifast: 19.12 -> 21.04
2021-08-23 07:29:27 +00:00
Sandro
00f31216e0
Merge pull request #130396 from collares/sage-9.4
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sage: 9.3 -> 9.4
2021-08-22 21:26:12 +02:00
Sandro
607fea187f
Merge pull request #135262 from shnarazk/cadical-141
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cadical: 1.3.0 -> 1.4.1
2021-08-22 20:01:59 +02:00
