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60 Commits

Author SHA1 Message Date
Alex Branham
4264ad4c2b R: 3.5.3 -> 3.6.0 
The patch is necessary for the test suite to pass without errors. The
fix has already been made upstream but didn't make it into the 3.6.0
release.

Closes https://github.com/NixOS/nixpkgs/pull/60273.
 2019-04-29 13:35:21 +02:00
Timo Kaufmann
31709b611f R: add timokau as a maintainer 
I'm interested in R as a dependency for sage. R changes are likely to
impact sage, so I'd like to get notified on those changes.
 2019-04-28 13:20:47 +02:00
Vladimír Čunát
f7ddff5c6d
R: fix regression from commit cbade453 #58989 
Normally the directory is created in fixup phase.
 2019-04-07 17:38:45 +02:00
rhokue
cbade453ac R: explicitly declare which as a run-time dependency 
Fixes https://github.com/NixOS/nixpkgs/issues/58963.
Closes https://github.com/NixOS/nixpkgs/pull/58989.
 2019-04-07 11:12:43 +02:00
Alex Branham
1e354a7e40 R: 3.5.2 -> 3.5.3 
Closes https://github.com/NixOS/nixpkgs/pull/57400.
 2019-03-14 19:50:37 +01:00
Alex Branham
a5fc513079 R: 3.5.1 -> 3.5.2 
Closes https://github.com/NixOS/nixpkgs/pull/52571.
 2018-12-21 13:59:36 +01:00
Matthew Bauer
c0a804c747 treewide: add dontUseImakeConfigure where needed 
We need to set dontUseImakeConfigure in a few places to prevent imake
from overriding the default configure phase. This packages all have a
configure script that needs to get run:

- Xaw3d
- R
- tkgate
- ssvnc
 2018-11-28 20:14:45 -06:00
Tom Hall
b51018ed2e R: Remove jdk dependency on aarch32/64 
Add javaSupport as an argument for R. Default to false on arm as there is no free jdk on arm.
 2018-11-10 20:53:26 +00:00
volth
52f53c69ce pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00
Peter Simons
cbc1a03ab8 R: update to version 3.5.1 
(cherry picked from commit 7e2f2037ea6d6533492d407696f260e7b11df49d)
 2018-07-02 11:33:50 +02:00
Silvan Mosberger
57bccb3cb8 treewide: http -> https sources (#42676) 
* treewide: http -> https sources

This updates the source urls of all top-level packages from http to
https where possible.

* buildtorrent: fix url and tab -> spaces
 2018-06-28 20:43:35 +02:00
Peter Simons
6799fcb42b R: 3.4.4 -> 3.5.0 
Unfortunately, the new version fails its test suite AGAIN when the recommended
packages are not build. Makes one wonder whether maybe we should offer the R
developers CI builds that check this. I've reported the issue upstream, let's
see what happens.
 2018-04-24 09:19:13 +02:00
Peter Simons
d46a4b9829 R: 3.4.3 -> 3.4.4 2018-03-15 18:32:14 +01:00
Mitsuhiro Nakamura
f4a031c63f R: add libcxx to default LDFLAGS and CPPFLAGS on Darwin 2018-02-06 18:57:12 +09:00
Daiderd Jordan
5569851745
R: fix dylib install_name on darwin 2018-01-24 00:23:16 +01:00
John Ericson
046f091e0d treewide: Don't use envHook anymore 
This commits needs a MAJOR audit as I oftentimes just guessed which of
`$hostOffset`, `$targetOffset`, or a fixed offset should be used.
 2017-12-30 22:04:22 -05:00
Peter Simons
b0f82f0f2d R: update to 3.4.3 2017-11-30 18:45:48 +01:00
Peter Simons
4239d3bcba R: update to version 3.4.2 2017-09-29 15:21:09 +02:00
Silvan Mosberger
f5fa5fa4d6 pkgs: refactor needless quoting of homepage meta attribute (#27809) 
* pkgs: refactor needless quoting of homepage meta attribute

A lot of packages are needlessly quoting the homepage meta attribute
(about 1400, 22%), this commit refactors all of those instances.

* pkgs: Fixing some links that were wrongfully unquoted in the previous
commit

* Fixed some instances
 2017-08-01 22:03:30 +02:00
Peter Simons
4c5577b504 R: update to version 3.4.1 2017-06-30 13:37:26 +02:00
Peter Simons
5e5d16f425 R: import upstream patch to fix broken "R CMD Sweave" command 
The command "R CMD Sweave" always exits with error code "1", even if the
command was successful. This upstream patch remedies this issue.
 2017-05-03 14:20:41 +02:00
Peter Simons
d16c38a260 R: update to version 3.4.0 
The new version needs TZ configured to a value other than "UTC" for the test
suite to succeed. Otherwise, an assumption in "reg-tests-1d.R" won't hold that
expects

  d <- as.POSIXlt("2016-12-06"); d$zone <- 1; format(d)

to throw an error about an invalid time zone.
 2017-04-24 15:39:08 +02:00
Peter Simons
c5563b48ba R: set TZDIR properly to fix test suite 2017-03-07 14:56:46 +01:00
Peter Simons
6b3eec627e R: include output of sessionInfo() in the "make check" log 
The R developers would like that information to be included in bug
reports.
 2017-03-07 14:56:46 +01:00
Peter Simons
fac139e723 R: update to version 3.3.3 2017-03-07 14:56:46 +01:00
Justin Bedo
4bb8727284
R: 3.2.4 -> 3.3.2 2017-02-24 15:22:12 +11:00
Michael Raskin
93bea1ecb0 R: 3.2.3 -> 3.2.4 2016-10-26 11:06:37 +02:00
Peter Simons
8e462995ba Bring my stdenv.lib.maintainers user name in line with my github nick. 2016-05-16 22:49:55 +02:00
Vladimír Čunát
716aac2519 Merge branch 'staging' into closure-size 2016-01-19 09:55:31 +01:00
Mathieu Boespflug
545444cd19 R: add a new enableStrictBarrier package option. 
This option compiles R with --enable-strict-barrier. Doing so is
enables extra memory diagnostics in R that very useful for debugging
memory leak or memory protections issues in extensions to R written in
C, or for any apps embedding R (e.g. Haskell aps embedding R via
HaskellR).
 2016-01-17 11:09:05 +01:00
Vladimír Čunát
4858f3307e R: fix build after splitting gfortran.lib 
The extra flag was causing static libraries to be found (and used)
before dynamic ones. /cc #12085
 2016-01-12 23:57:48 +01:00
Asko Soukka
a225a650bf R: fix Darwin build 
Merged manually from https://github.com/NixOS/nixpkgs/pull/10623.
 2016-01-06 22:20:40 +01:00
Michel Kuhlmann
cebbb18e9e R: 3.2.2 -> 3.2.3 2015-12-11 11:36:30 +01:00
Nikolay Amiantov
5ee5b5ba82 R: add curl for https support 2015-11-25 11:39:28 +01:00
Karn Kallio
87b75c33ce R: advance to version 3.2.2. 
A test failing without recommended packages has been patched.
 2015-10-02 22:15:14 +02:00
Michel Kuhlmann
46d46fd05a R: update to 3.2.1 2015-06-18 14:00:29 +02:00
Thomas Tuegel
e729a88474 R: build with openblas 
Fixes #6393.
 2015-06-04 17:42:04 -05:00
Peter Simons
f82a287c20 R: update to 3.2.0 2015-04-17 20:02:46 +02:00
Peter Simons
3f7de179f5 R: update to version 3.1.3 2015-03-09 16:37:05 +01:00
Eric Seidel
f272730399 rename <gcc-frontend>.gcc to <gcc-frontend>.cc 2015-01-14 20:59:10 -08:00
Peter Simons
67ddc8f4b9 R: add meta.platforms attribute 2014-12-03 16:28:28 +01:00
Peter Simons
a9c53037fa Merge remote-tracking branch 'origin/master' into staging. 2014-11-02 16:15:53 +01:00
Peter Simons
ead6bc4a57 R: run the test suite only when recommended packages are built 2014-11-01 21:08:05 +01:00
Peter Simons
12e26d47b7 R: update to version R-3.1.2 2014-11-01 13:43:48 +01:00
Eelco Dolstra
91ec6e0d90 Merge remote-tracking branch 'origin/master' into staging 2014-09-18 22:28:35 +02:00
Vladimír Čunát
d957b4bd78 Merge recent master into staging 
Hydra nixpkgs: ?compare=1151601
 2014-09-13 21:48:29 +02:00
Peter Simons
b9f7f19820 R: Revert update to version 3.1.1 
This reverts commit 6e803a684f. The new version
fails its test suite [1]. The issue has been reported upstream [2].

[1] http://hydra.cryp.to/build/191457/nixlog/1/raw
[2] https://bugs.r-project.org/bugzilla/show_bug.cgi?id=15975
 2014-09-13 20:03:44 +02:00
Peter Simons
6e803a684f R: update to version 3.1.1 2014-09-12 15:20:06 +02:00
Eelco Dolstra
e3f7dbbac8 Cleanup: Use += to append to envHooks 2014-08-09 12:47:05 +02:00
Ellis Whitehead
a257d14925 R: install lib/libR.so for use by other programs such as RStudio 2014-05-17 21:35:02 +02:00