figsoda
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3109ff5765
|
treewide: avoid use of lib.optional with list in inputs
|
2021-10-04 13:02:42 -04:00 |
|
R. RyanTM
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5becb56f71
|
star: 2.7.8a -> 2.7.9a
|
2021-09-24 10:37:28 +08:00 |
|
Bobby Rong
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c25465873c
|
Merge pull request #138022 from natsukium/blast/update
blast: 2.11.0 -> 2.12.0
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2021-09-23 14:48:35 +08:00 |
|
Guillaume Girol
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4bc83aaffa
|
Merge pull request #136489 from ehmry/nimPackages
nimpackages / buildNimPackage
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2021-09-22 18:35:38 +00:00 |
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figsoda
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0e575a459e
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Merge pull request #137974 from r-ryantm/auto-update/bowtie
bowtie: 1.3.0 -> 1.3.1
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2021-09-17 22:52:43 -04:00 |
|
Bobby Rong
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12d38c57c3
|
Merge pull request #134133 from Kranzes/auto-update/SPAdes
SPAdes: 3.15.2 -> 3.15.3
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2021-09-16 17:09:24 +08:00 |
|
Tomoya Otabi
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1e9bd43214
|
blast: 2.11.0 -> 2.12.0
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2021-09-15 15:33:44 +00:00 |
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R. RyanTM
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7bf7c9b92b
|
bowtie: 1.3.0 -> 1.3.1
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2021-09-15 07:35:44 +00:00 |
|
R. RyanTM
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e676fdcb90
|
picard-tools: 2.26.0 -> 2.26.2
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2021-09-14 19:53:25 +00:00 |
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adisbladis
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fcf5397793
|
Merge pull request #135905 from dukc/secondDmd2097
D compiler update
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2021-09-13 11:36:55 -05:00 |
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Sandro
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205c2ada66
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Merge pull request #136967 from bzizou/obitools
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2021-09-11 16:27:18 +02:00 |
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Bruno Bzeznik
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3bd1b0ed0d
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obitools3: 3.0.0-beta14 -> 3.0.1b11
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2021-09-07 09:38:41 +02:00 |
|
Emery Hemingway
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323c503cba
|
mosdepth: convert to buildNimPackage
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2021-09-05 11:20:02 +02:00 |
|
Ate Eskola
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b2a39efa57
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sambamba 0.8.0 -> 0.8.1
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2021-08-31 12:37:49 +03:00 |
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davidak
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1b78608c69
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Merge pull request #135516 from bzizou/stacks
stacks: Changed license to gpl3Plus
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2021-08-26 03:50:48 +02:00 |
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Justin Bedo
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b1b57ec04e
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fastp: 0.20.1 -> 0.22.0
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2021-08-25 09:52:07 +10:00 |
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Ryan Mulligan
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8c2e2ffe95
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Merge pull request #135212 from r-ryantm/auto-update/stacks
stacks: 2.55 -> 2.59
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2021-08-24 09:03:17 -07:00 |
|
Bruno Bzeznik
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a240cd9f4f
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stacks: Changed license to gpl3Plus
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2021-08-24 09:47:24 +02:00 |
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Ryan Mulligan
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997f4452a4
|
Merge pull request #135255 from r-ryantm/auto-update/picard-tools
picard-tools: 2.25.7 -> 2.26.0
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2021-08-23 20:56:38 -07:00 |
|
Jörg Thalheim
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11e5c3ac4b
|
bowtie: fix homepage
|
2021-08-22 16:08:28 +02:00 |
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R. RyanTM
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742cd80071
|
picard-tools: 2.25.7 -> 2.26.0
|
2021-08-22 10:47:38 +00:00 |
|
R. RyanTM
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67c1256ddd
|
stacks: 2.55 -> 2.59
|
2021-08-22 07:08:39 +00:00 |
|
Sebastián Mancilla
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8f94a33b38
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treewide: ensure pre/post phase hooks are strings
Some derivations use lib.optional or lib.optionals when setting pre/post
phase hooks. Ensure the proper lib.optionalString is used.
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2021-08-20 19:08:42 -04:00 |
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Ryan Mulligan
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ad59a67ec0
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Merge pull request #134444 from r-ryantm/auto-update/picard-tools
picard-tools: 2.25.1 -> 2.25.7
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2021-08-17 16:47:31 -07:00 |
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R. RyanTM
|
1a23a8bb9e
|
picard-tools: 2.25.1 -> 2.25.7
|
2021-08-17 13:50:42 +00:00 |
|
Ilan Joselevich
|
9f5b3fafa0
|
SPAdes: 3.15.2 -> 3.15.3
|
2021-08-15 11:12:42 +03:00 |
|
R. RyanTM
|
5693a554e2
|
minimap2: 2.17 -> 2.22
|
2021-08-14 15:55:35 +00:00 |
|
Artturi
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e69c8ea78e
|
Merge pull request #111691 from jbedo/bowtie2
bowtie2: resolve missing runtime dependencies
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2021-08-07 04:03:47 +03:00 |
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Sandro
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04b5e62d8d
|
Merge pull request #132468 from Stunkymonkey/applications-phases1
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2021-08-05 09:37:57 +02:00 |
|
Felix Buehler
|
be219752d2
|
picard-tools: deprecate phases
|
2021-08-03 00:04:29 +02:00 |
|
Felix Buehler
|
4b883542fe
|
varscan: deprecate phases
|
2021-08-03 00:04:16 +02:00 |
|
Artturin
|
f173c77476
|
perlPackages.ImageMagick: rename from perlPackages.PerlMagick
|
2021-08-02 20:05:00 +03:00 |
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Sandro
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1524f36b3e
|
Merge pull request #131627 from jbedo/mosdepth
mosdepth: 0.3.1 -> 0.3.2
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2021-07-29 13:56:24 +00:00 |
|
Sandro Jäckel
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cebfbdff37
|
mrbayes: 3.2.7 -> 3.2.7a
|
2021-07-27 14:30:23 +02:00 |
|
Sandro Jäckel
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108ad942fb
|
mrbayes: modernize
|
2021-07-27 11:53:51 +02:00 |
|
Justin Bedo
|
d885373469
|
mosdepth: 0.3.1 -> 0.3.2
|
2021-07-27 09:52:22 +10:00 |
|
R. RyanTM
|
d943e6aa12
|
bedops: 2.4.39 -> 2.4.40
|
2021-07-23 01:02:40 +00:00 |
|
Sandro
|
d5bd34ebf2
|
treewide: convert phases that contain ":" to dont* = true (#130500)
|
2021-07-18 23:42:48 +02:00 |
|
R. RyanTM
|
7177212409
|
bcftools: 1.11 -> 1.13
|
2021-07-10 10:15:10 +00:00 |
|
scalavision
|
c6ca3545ae
|
truvari: 2.0.2 -> 2.1.1 (#126839)
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
|
2021-06-15 22:14:20 +02:00 |
|
R. RyanTM
|
089915f634
|
bowtie2: 2.4.3 -> 2.4.4
|
2021-05-26 23:43:08 -07:00 |
|
Stéphan Kochen
|
c47425a230
|
sambamba: fix darwin build
|
2021-05-22 20:56:09 +02:00 |
|
Stéphan Kochen
|
20f36556dc
|
samblaster: fix darwin build
|
2021-05-18 13:41:51 +02:00 |
|
Sandro
|
83c5d21320
|
Merge pull request #123083 from stephank/fix-est-sfs-darwin
est-sfs: fix darwin build
|
2021-05-17 18:58:33 +02:00 |
|
R. RyanTM
|
9528bf9fd9
|
bowtie2: 2.4.2 -> 2.4.3
|
2021-05-16 02:53:03 -04:00 |
|
Stéphan Kochen
|
d707979a73
|
est-sfs: fix darwin build
|
2021-05-15 12:10:05 +02:00 |
|
Stéphan Kochen
|
2adca7ae14
|
cd-hit: fix darwin build (#123026)
|
2021-05-14 17:27:16 -04:00 |
|
Justin Bedo
|
40eeb2c6d3
|
octopus: 0.7.3 -> 0.7.4
|
2021-05-11 08:46:00 +10:00 |
|
Luke Granger-Brown
|
884cf29501
|
dcm2niix: 1.0.20201102 -> 1.0.20210317
|
2021-05-02 11:10:40 +00:00 |
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R. RyanTM
|
ad5f251230
|
dcm2niix: 1.0.20200331 -> 1.0.20201102
|
2021-05-02 03:14:11 +00:00 |
|
Justin Bedo
|
def7c82f88
|
octopus: 0.7.1 -> 0.7.3
|
2021-04-20 10:13:25 +10:00 |
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Sandro
|
28fb287d4b
|
Merge pull request #118610 from GregorySchwartz/init/macs2
|
2021-04-14 21:15:38 +02:00 |
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Gregory W. Schwartz
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b7763a8287
|
macs2: init at 2.2.7.1
Update pkgs/applications/science/biology/macs2/default.nix
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
Update pkgs/applications/science/biology/macs2/default.nix
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
Update pkgs/applications/science/biology/macs2/default.nix
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
Update pkgs/applications/science/biology/macs2/default.nix
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
Renamed package, updated version, set pypi, and added import test.
Update pkgs/applications/science/biology/MACS2/default.nix
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
Add comment about error for checking.
Two spaces indent.
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2021-04-14 10:17:53 -04:00 |
|
Gregory Schwartz
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9bf867612d
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meme-suite: init at 5.1.1 (#118603)
Co-authored-by: Sandro <sandro.jaeckel@gmail.com>
|
2021-04-05 22:43:27 +02:00 |
|
Sandro Jäckel
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3453b89f4b
|
lzma: deprecate alias
|
2021-04-04 19:49:52 +02:00 |
|
Ryan Mulligan
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f3262c2a3e
|
Merge pull request #117648 from r-ryantm/auto-update/picard-tools
picard-tools: 2.25.0 -> 2.25.1
|
2021-03-29 16:10:25 -07:00 |
|
Justin Bedo
|
76bd953162
|
bedops: init 2.4.39
|
2021-03-28 22:27:51 -04:00 |
|
R. RyanTM
|
49e4c1e323
|
picard-tools: 2.25.0 -> 2.25.1
|
2021-03-26 03:16:44 +00:00 |
|
Frederik Rietdijk
|
5a5cb718a5
|
bedtools: use python3
|
2021-03-25 10:42:32 +01:00 |
|
Frederik Rietdijk
|
2c00aed6b1
|
bcftools: use python3
|
2021-03-25 10:39:47 +01:00 |
|
Bruno Bzeznik
|
f0eef16f9c
|
SPAdes: 3.15.1 -> 3.15.2 + fix license and platform
|
2021-03-23 10:51:01 +01:00 |
|
Jan Tojnar
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2445e9a681
|
Merge branch 'master' into staging-next
|
2021-03-18 19:24:39 +01:00 |
|
Thomas Mader
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09acdfde94
|
sambamba: 0.7.1 -> 0.8.0
Getting rid of dmd dependency and compile with ldc
|
2021-03-18 17:41:30 +02:00 |
|
Martin Weinelt
|
0241873f7f
|
Merge branch 'master' into staging-next
|
2021-03-14 17:35:32 +01:00 |
|
Ryan Mulligan
|
0e63a1bb33
|
Merge pull request #115579 from r-ryantm/auto-update/stacks
stacks: 2.53 -> 2.55
|
2021-03-14 07:47:22 -07:00 |
|
Ryan Mulligan
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03754f91eb
|
Merge pull request #115574 from r-ryantm/auto-update/SPAdes
SPAdes: 3.14.1 -> 3.15.1
|
2021-03-14 07:46:58 -07:00 |
|
github-actions[bot]
|
aea4725648
|
Merge master into staging-next
|
2021-03-10 12:21:24 +00:00 |
|
Justin Bedo
|
4e1a560ae4
|
octopus: 0.7.0 -> 0.7.1
|
2021-03-10 08:44:18 +11:00 |
|
R. RyanTM
|
cb9f13c609
|
stacks: 2.53 -> 2.55
|
2021-03-09 17:19:55 +00:00 |
|
R. RyanTM
|
95d96bbfe5
|
SPAdes: 3.14.1 -> 3.15.1
|
2021-03-09 17:01:01 +00:00 |
|
github-actions[bot]
|
5c2a7abde7
|
Merge master into staging-next
|
2021-03-08 18:22:56 +00:00 |
|
R. RyanTM
|
12cde5ea85
|
messer-slim: 3.2.1 -> 3.6
|
2021-03-04 18:40:37 +00:00 |
|
Robert Schütz
|
54757b35c1
|
Merge branch 'staging-next' into staging
|
2021-02-26 10:56:17 +01:00 |
|
Frederik Rietdijk
|
c456a2512f
|
Merge master into staging-next
|
2021-02-26 10:25:13 +01:00 |
|
R. RyanTM
|
615ff1b2ab
|
star: 2.7.7a -> 2.7.8a
|
2021-02-23 10:38:00 +00:00 |
|
github-actions[bot]
|
ed07c63105
|
Merge staging-next into staging
|
2021-02-22 06:17:08 +00:00 |
|
github-actions[bot]
|
227aa2c9b0
|
Merge master into staging-next
|
2021-02-22 06:17:05 +00:00 |
|
R. RyanTM
|
ff27c8e0ad
|
last: 1178 -> 1179
|
2021-02-21 21:24:17 +00:00 |
|
Ben Siraphob
|
127733211e
|
treewide: unzip buildInputs to nativeBuildInputs (#112302)
|
2021-02-20 16:01:53 -05:00 |
|
github-actions[bot]
|
abe7db36a4
|
Merge staging-next into staging
|
2021-02-20 00:36:40 +00:00 |
|
Ben Siraphob
|
223f25cf4a
|
treewide: add targetPrefix to hardcoded references to CC=cc
|
2021-02-20 01:01:46 +07:00 |
|
Ben Siraphob
|
e03c068af5
|
treewide: makeWrapper buildInputs to nativeBuildInputs
|
2021-02-19 20:09:16 +07:00 |
|
github-actions[bot]
|
318f95e4c2
|
Merge master into staging-next
|
2021-02-13 06:16:33 +00:00 |
|
R. RyanTM
|
d1067751c6
|
picard-tools: 2.24.2 -> 2.25.0
|
2021-02-11 21:10:44 +00:00 |
|
github-actions[bot]
|
30dddce5e8
|
Merge master into staging-next
|
2021-02-09 06:16:02 +00:00 |
|
Mario Rodas
|
f9a095da28
|
Merge pull request #112191 from r-ryantm/auto-update/star
star: 2.7.6a -> 2.7.7a
|
2021-02-08 20:17:49 -05:00 |
|
github-actions[bot]
|
1c86cb40e9
|
Merge master into staging-next
|
2021-02-08 00:36:16 +00:00 |
|
Ryan Mulligan
|
64c446d0ba
|
Merge pull request #112021 from r-ryantm/auto-update/picard-tools
picard-tools: 2.24.1 -> 2.24.2
|
2021-02-07 14:57:32 -08:00 |
|
github-actions[bot]
|
aaaf1218bf
|
Merge master into staging-next
|
2021-02-07 00:37:36 +00:00 |
|
R. RyanTM
|
ef6ed50cb4
|
star: 2.7.6a -> 2.7.7a
|
2021-02-06 19:50:22 +00:00 |
|
Orivej Desh
|
8d0af26e1d
|
blast: 2.10.0 -> 2.11.0
Fixes build with gcc10.
|
2021-02-06 19:20:56 +00:00 |
|
R. RyanTM
|
0adfe0f108
|
picard-tools: 2.24.1 -> 2.24.2
|
2021-02-05 12:35:00 +00:00 |
|
Justin Bedo
|
6d84ba18d5
|
bowtie2: resolve missing runtime dependencies
|
2021-02-03 11:12:26 +11:00 |
|
R. RyanTM
|
ad28c0fb42
|
last: 1170 -> 1178
|
2021-01-30 07:52:29 +00:00 |
|
Phillip Cloud
|
bba47f95f1
|
sortmerna: mark broken on darwin
|
2021-01-26 12:55:33 -05:00 |
|
Pavol Rusnak
|
a6ce00c50c
|
treewide: remove stdenv where not needed
|
2021-01-25 18:31:47 +01:00 |
|
Sandro
|
ad445d3728
|
Merge pull request #110735 from jbedo/bedtools
bedtools: 2.29.2 -> 2.30.0
|
2021-01-25 11:04:30 +01:00 |
|
Ryan Mulligan
|
afebf1cc9a
|
Merge pull request #110529 from r-ryantm/auto-update/picard-tools
picard-tools: 2.24.0 -> 2.24.1
|
2021-01-24 18:06:28 -08:00 |
|
Justin Bedo
|
d81e79af15
|
bedtools: 2.29.2 -> 2.30.0
|
2021-01-25 13:06:22 +11:00 |
|
volth
|
bc0d605cf1
|
treewide: fix double quoted strings in meta.description
Signed-off-by: Ben Siraphob <bensiraphob@gmail.com>
|
2021-01-24 19:56:59 +07:00 |
|