960 Commits

Author	SHA1	Message	Date
natsukium	1e68ff3ee9	kent: 404 -> 446 ... https://github.com/ucscGenomeBrowser/kent/compare/v404_base...v446_base	2023-04-20 16:05:44 +09:00
Artturi	9a1f5d4248	Merge pull request #226889 from Artturin/fixlints2	2023-04-18 21:52:21 +03:00
Artturin	eac28f38d6	treewide: fix lints ... Arg to lib.optional is a list build time tool in buildInputs *Flags not a list https://github.com/nix-community/nixpkgs-lint	2023-04-18 20:20:56 +03:00
Sandro	555daa9d33	Merge pull request #221957 from natsukium/dssp/update ... dssp: 4.0.5 -> 4.2.2.1	2023-04-18 16:34:17 +02:00
natsukium	62943901dd	dssp: 4.0.5 -> 4.2.2.1 ... https://github.com/PDB-REDO/dssp/compare/v4.0.5...v4.2.2.1	2023-04-14 11:35:48 +09:00
Nick Cao	2833fc3981	Merge pull request #225841 from natsukium/mafft/update ... mafft: 7.515 -> 7.520	2023-04-13 09:15:12 +08:00
Robert Scott	2107f7de60	Merge pull request #225865 from bzizou/samtools ... samtools: 1.13 -> 1.17	2023-04-13 00:10:42 +01:00
Bruno Bzeznik	d69d242b7b	Samtools: 1.13 -> 1.17 ... Changelogs: - https://github.com/samtools/samtools/releases/tag/1.14 - https://github.com/samtools/samtools/releases/tag/1.15 - https://github.com/samtools/samtools/releases/tag/1.15.1 - https://github.com/samtools/samtools/releases/tag/1.16 - https://github.com/samtools/samtools/releases/tag/1.16.1 - https://github.com/samtools/samtools/releases/tag/1.17	2023-04-12 12:00:25 +02:00
natsukium	f962206f94	mafft: 7.515 -> 7.520 ... https://gitlab.com/sysimm/mafft/-/tags/v7.520	2023-04-12 13:28:24 +09:00
R. Ryantm	8fcdc3f62c	varscan: 2.4.5 -> 2.4.6	2023-04-05 14:55:31 +00:00
Weijia Wang	150dcd7ce7	Merge pull request #224345 from natsukium/blast/darwin ... blast-bin: init at 2.13.0	2023-04-03 09:59:08 +03:00
natsukium	cddb4a24ba	blast-bin: init at 2.13.0	2023-04-03 12:39:17 +09:00
Justin Bedo	e739dc5088	last: 1447 -> 1453	2023-04-03 08:38:27 +10:00
github-actions[bot]	cead7e3e73	Merge master into staging-next	2023-03-25 00:02:20 +00:00
Weijia Wang	2ce97f2bf9	Merge pull request #222464 from r-ryantm/auto-update/diamond ... diamond: 2.1.5 -> 2.1.6	2023-03-24 20:56:17 +02:00
github-actions[bot]	0537539006	Merge master into staging-next	2023-03-22 12:01:22 +00:00
Nick Cao	6c4095e7af	Merge pull request #222331 from r-ryantm/auto-update/seqkit ... seqkit: 2.3.1 -> 2.4.0	2023-03-22 16:08:39 +08:00
R. Ryantm	4c2324cf14	diamond: 2.1.5 -> 2.1.6	2023-03-22 03:09:40 +00:00
R. Ryantm	a6f33bd62f	seqkit: 2.3.1 -> 2.4.0	2023-03-21 10:45:22 +00:00
Martin Weinelt	9959ec97f8	Merge remote-tracking branch 'origin/master' into staging-next ... Conflicts: - pkgs/development/python-modules/wxPython/4.0.nix - pkgs/development/python-modules/wxPython/4.1.nix	2023-03-20 15:07:36 +01:00
Weijia Wang	802b7ac3e7	Merge pull request #221743 from r-ryantm/auto-update/gatk ... gatk: 4.3.0.0 -> 4.4.0.0	2023-03-20 14:33:37 +02:00
github-actions[bot]	84c97a9e91	Merge master into staging-next	2023-03-19 18:00:59 +00:00
natsukium	21affa5ff1	trf: init at 4.09.1	2023-03-19 22:25:42 +09:00
github-actions[bot]	c70342c89c	Merge master into staging-next	2023-03-19 00:02:27 +00:00
Weijia Wang	7574e25ef3	Merge pull request #221864 from natsukium/mafft/update ... mafft: 7.508 -> 7.515	2023-03-19 00:03:19 +02:00
github-actions[bot]	403b148aa5	Merge master into staging-next	2023-03-18 18:01:02 +00:00
natsukium	f3b75ef3ce	mafft: 7.508 -> 7.515	2023-03-19 00:42:29 +09:00
Fabian Affolter	109f8ccdfe	nest: specify license	2023-03-18 11:23:52 +01:00
Fabian Affolter	c7ec291235	nest: add changelog to meta	2023-03-18 11:23:06 +01:00
Weijia Wang	ea847dd1a0	nest: 3.3 -> 3.4	2023-03-18 12:13:46 +02:00
R. Ryantm	0d44f838ca	gatk: 4.3.0.0 -> 4.4.0.0	2023-03-18 01:10:14 +00:00
github-actions[bot]	f5629a4518	Merge master into staging-next	2023-03-17 06:01:16 +00:00
R. Ryantm	2a35b86739	subread: 2.0.3 -> 2.0.4	2023-03-16 23:09:44 +00:00
Vladimír Čunát	0f9354bfee	Merge #218309: ffmpeg: ffmpeg_4 → ffmpeg_5 ... ...into staging	2023-03-16 11:11:31 +01:00
Martin Weinelt	6b67186fe9	Merge remote-tracking branch 'origin/master' into staging-next ... Conflicts: - pkgs/development/python-modules/crownstone-cloud/default.nix - pkgs/development/python-modules/exrex/default.nix - pkgs/development/python-modules/mkdocs-minify/default.nix - pkgs/development/python-modules/myjwt/default.nix - pkgs/development/tools/analysis/checkov/default.nix	2023-03-14 08:14:26 +01:00
Artturi	b978bf0f0f	Merge pull request #220570 from Artturin/fixlints1	2023-03-14 02:15:55 +02:00
Atemu	9bd2506458	treewide: make ffmpeg_4-dependant packages depend on ffmpeg_4 ... These packages were identified as broken when ffmpeg = ffmpeg_5. Tested _only_ by building them. If you are a maintainer of one of these packages, please test whether your package still works.	2023-03-13 16:42:22 -06:00
Vladimír Čunát	1dd94ad62f	Merge branch 'master' into staging-next	2023-03-12 09:06:28 +01:00
R. Ryantm	77c83ddbc9	diamond: 2.1.4 -> 2.1.5	2023-03-11 18:22:58 +00:00
Artturin	cab4a24c34	treewide: fix lints ... Arg to lib.optional is a list build time tool in buildInputs	2023-03-11 00:55:17 +02:00
Martin Weinelt	8a085cd8e3	Merge remote-tracking branch 'origin/master' into staging-next	2023-03-05 15:36:16 +01:00
R. Ryantm	e175a2ea68	diamond: 2.1.3 -> 2.1.4	2023-03-04 15:44:53 +00:00
Martin Weinelt	d0286ecd24	Merge remote-tracking branch 'origin/staging' into staging-next	2023-03-04 01:42:06 +00:00
R. Ryantm	99785ee90e	picard-tools: 2.27.5 -> 3.0.0	2023-03-01 14:43:38 +00:00
Weijia Wang	ccd9d6da1e	Merge pull request #218118 from r-ryantm/auto-update/diamond ... diamond: 2.1.1 -> 2.1.3	2023-02-27 21:28:18 +02:00
Artturi	1c6a1e5650	Merge pull request #218500 from alyssais/pythonForBuild	2023-02-27 18:17:27 +02:00
Weijia Wang	21bb99733d	Merge pull request #218342 from r-ryantm/auto-update/bcftools ... bcftools: 1.16 -> 1.17	2023-02-27 18:02:55 +02:00
Alyssa Ross	2bfa93e01c	treewide: python{ => .pythonForBuild}.interpreter ... It won't be enough to fix cross in all cases, but it is in at least one: pywayland. I've only made the change in cases I'm confident it's correct, as it would be wrong to change this when python.interpreter is used in wrappers, and possibly when it's used for running tests.	2023-02-26 20:26:17 +00:00
R. Ryantm	f2465e1ecf	neuron-full: 8.2.1 -> 8.2.2	2023-02-26 05:18:37 +00:00
R. Ryantm	95ca5f576c	bcftools: 1.16 -> 1.17	2023-02-25 23:02:27 +00:00