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7444 Commits

Author SHA1 Message Date
Weijia Wang
7574e25ef3
Merge pull request #221864 from natsukium/mafft/update 
mafft: 7.508 -> 7.515
 2023-03-19 00:03:19 +02:00
Weijia Wang
8da8071e37 glucose: 4.1 -> 4.2.1 2023-03-18 22:17:16 +02:00
github-actions[bot]
403b148aa5
Merge master into staging-next 2023-03-18 18:01:02 +00:00
Weijia Wang
0ddc01c569 glucose: refactor 2023-03-18 19:00:45 +02:00
natsukium
f3b75ef3ce
mafft: 7.508 -> 7.515 2023-03-19 00:42:29 +09:00
Weijia Wang
f15cf7e6af
Merge pull request #221809 from wegank/nest-bump 
nest: 3.3 -> 3.4
 2023-03-18 17:17:18 +02:00
github-actions[bot]
a912b83051
Merge master into staging-next 2023-03-18 12:01:30 +00:00
Weijia Wang
b45fe715d9
Merge pull request #217922 from r-ryantm/auto-update/openboardview 
openboardview: 9.0.3 -> 9.95.0
 2023-03-18 13:00:52 +02:00
Fabian Affolter
109f8ccdfe
nest: specify license 2023-03-18 11:23:52 +01:00
Fabian Affolter
c7ec291235
nest: add changelog to meta 2023-03-18 11:23:06 +01:00
Weijia Wang
ea847dd1a0 nest: 3.3 -> 3.4 2023-03-18 12:13:46 +02:00
R. Ryantm
0d44f838ca gatk: 4.3.0.0 -> 4.4.0.0 2023-03-18 01:10:14 +00:00
K900
a5a292c7a8 treewide: clear out remaining qt5 conditionals 2023-03-18 02:10:20 +03:00
github-actions[bot]
d761f69867
Merge master into staging-next 2023-03-17 17:57:00 +00:00
Markus Kowalewski
545b5d04f4
openmolcas: 22.10 -> 23.02 2023-03-17 13:33:41 +01:00
github-actions[bot]
2394986204
Merge master into staging-next 2023-03-17 12:01:17 +00:00
Weijia Wang
9c8a92bcde
Merge pull request #205310 from r-ryantm/auto-update/sumo 
sumo: 1.9.2 -> 1.15.0
 2023-03-17 12:56:48 +02:00
github-actions[bot]
f5629a4518
Merge master into staging-next 2023-03-17 06:01:16 +00:00
Weijia Wang
854414836c
Merge pull request #221529 from wegank/qalculate-qt-darwin 
qalculate-qt: add darwin support
 2023-03-17 07:47:56 +02:00
Justin Bedő
bf32c70253
Merge pull request #221559 from r-ryantm/auto-update/subread 
subread: 2.0.3 -> 2.0.4
 2023-03-17 01:57:57 +00:00
github-actions[bot]
6746017444
Merge master into staging-next 2023-03-17 00:02:33 +00:00
R. Ryantm
2a35b86739 subread: 2.0.3 -> 2.0.4 2023-03-16 23:09:44 +00:00
markuskowa
0fea9287f4
Merge pull request #221301 from sheepforce/plumed 
plumed: init at 2.8.2
 2023-03-16 20:43:54 +01:00
Weijia Wang
5c214fb163 qalculate-qt: add darwin support 2023-03-16 21:31:51 +02:00
github-actions[bot]
455127ad5e
Merge master into staging-next 2023-03-16 18:01:20 +00:00
Weijia Wang
183c970c9a
Merge pull request #221403 from r-ryantm/auto-update/gama 
gama: 2.23 -> 2.24
 2023-03-16 18:03:12 +02:00
Weijia Wang
de6210e074
Merge pull request #217539 from GenericNerdyUsername/horizon-occ 
horizon-eda: switch from OCE to OCC
 2023-03-16 17:20:47 +02:00
Bernardo Meurer
6e55733359
Merge pull request #219747 from Stunkymonkey/deprecate-isNull 2023-03-16 11:10:22 -03:00
Phillip Seeber
09b52c631a cp2k: enable plumed plugin 
cp2k: enable plumed plugin


cp2k: use mpicxx to figure out link lines
 2023-03-16 14:30:27 +01:00
github-actions[bot]
80a0ae17b5
Merge master into staging-next 2023-03-16 12:01:29 +00:00
Vladimír Čunát
0f9354bfee
Merge #218309: ffmpeg: ffmpeg_4 → ffmpeg_5 
...into staging
 2023-03-16 11:11:31 +01:00
Weijia Wang
b3e468975f
Merge pull request #221402 from r-ryantm/auto-update/uarmsolver 
uarmsolver: 0.2.4 -> 0.2.5
 2023-03-16 09:09:24 +02:00
R. Ryantm
166bed2b29 gama: 2.23 -> 2.24 2023-03-16 00:43:50 +00:00
R. Ryantm
139df052d5 uarmsolver: 0.2.4 -> 0.2.5 2023-03-16 00:42:06 +00:00
github-actions[bot]
a8ddab03b5
Merge staging-next into staging 2023-03-16 00:03:10 +00:00
Weijia Wang
b8aec5ff2d
Merge pull request #221107 from r-ryantm/auto-update/openhantek6022 
openhantek6022: 3.3.2.1 -> 3.3.2.2
 2023-03-15 22:09:12 +02:00
Martin Weinelt
19680e9902
Merge pull request #217568 from trofi/stdenv-parallel-install 
stdenv/generic/setup.sh: enable parallel installs for parallel builds
 2023-03-15 17:10:19 +00:00
Justin Bedo
5eff9f1940
R: 4.2.2 -> 4.2.3 2023-03-15 22:51:17 +11:00
Martin Weinelt
9e4d592114
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
- pkgs/development/python-modules/eve/default.nix
 2023-03-14 16:49:37 +01:00
Weijia Wang
6bade5f7df tamarin-prover: only use glibcLocales on linux 2023-03-14 15:55:12 +02:00
Martin Weinelt
6b67186fe9
Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
- pkgs/development/python-modules/crownstone-cloud/default.nix
- pkgs/development/python-modules/exrex/default.nix
- pkgs/development/python-modules/mkdocs-minify/default.nix
- pkgs/development/python-modules/myjwt/default.nix
- pkgs/development/tools/analysis/checkov/default.nix
 2023-03-14 08:14:26 +01:00
Weijia Wang
5a0dde3bf1
Merge pull request #221042 from r-ryantm/auto-update/calc 
calc: 2.14.1.3 -> 2.14.1.5
 2023-03-14 08:23:20 +02:00
R. Ryantm
58a2c5a184 openhantek6022: 3.3.2.1 -> 3.3.2.2 2023-03-14 03:37:23 +00:00
Artturi
b978bf0f0f
Merge pull request #220570 from Artturin/fixlints1 2023-03-14 02:15:55 +02:00
Atemu
9bd2506458 treewide: make ffmpeg_4-dependant packages depend on ffmpeg_4 
These packages were identified as broken when ffmpeg = ffmpeg_5.

Tested _only_ by building them. If you are a maintainer of one of these
packages, please test whether your package still works.
 2023-03-13 16:42:22 -06:00
R. Ryantm
70723fce93 calc: 2.14.1.3 -> 2.14.1.5 2023-03-13 18:59:18 +00:00
Vladimír Čunát
2d51a0e8ad
Merge branch 'master' into staging-next 2023-03-13 08:25:10 +01:00
Austin Seipp
787381926a tamarin-prover: set LOCALE_ARCHIVE in wrapper 
Signed-off-by: Austin Seipp <aseipp@pobox.com>
 2023-03-12 19:06:58 -05:00
Luflosi
e8f1fcd350 abc-verifier: unstable-2023-02-04 -> unstable-2023-02-23 2023-03-12 18:10:19 -05:00
Martin Weinelt
5abe72f0b2 Merge remote-tracking branch 'origin/master' into staging-next 
Conflicts:
- pkgs/development/python-modules/mdutils/default.nix
 2023-03-12 15:59:15 +01:00
Mauricio Collares
652e253e26
Merge pull request #220559 from amesgen/fix-sage 
sage: fix build by downgrading maxima to 5.45
 2023-03-12 14:51:57 +01:00
Vladimír Čunát
1dd94ad62f
Merge branch 'master' into staging-next 2023-03-12 09:06:28 +01:00
R. Ryantm
77c83ddbc9 diamond: 2.1.4 -> 2.1.5 2023-03-11 18:22:58 +00:00
github-actions[bot]
140a35879a
Merge master into staging-next 2023-03-11 12:01:11 +00:00
Artturin
cab4a24c34 treewide: fix lints 
Arg to lib.optional is a list

build time tool in buildInputs
 2023-03-11 00:55:17 +02:00
amesgen
0a1a3e9d95
maxima-ecl: fix build by removing upstreamed patch 2023-03-10 21:57:12 +01:00
amesgen
70b827c60a
sage: fix build by downgrading maxima to 5.45 2023-03-10 21:55:54 +01:00
Martin Weinelt
ef91384e6f Merge remote-tracking branch 'origin/master' into staging-next 2023-03-10 13:09:25 +01:00
Yueh-Shun Li
564e20e62d
Revert "root: remove the already-default CMAKE_INSTALL_*DIR flags" (#220437) 
For some reason, this makes $out/bin/rootcint disappear

$out/bin/rootcint is a duplication of $out/bin/rootcling
for compatibility reason

This reverts commit c09e03c1a6.
 2023-03-10 01:48:11 -05:00
Sergei Trofimovich
03be09d518 gretl: disable install parallelism 
Without the change parallel installs fail as:

    cp: cannot stat '...-gretl-2022c/share/gretl/data/plotbars': Not a directory
    make[1]: *** [Makefile:73: install_datafiles] Error 1
 2023-03-09 22:29:59 +00:00
Martin Weinelt
4729f61158 Merge remote-tracking branch 'origin/master' into staging-next 2023-03-08 15:04:13 +01:00
Doron Behar
ba4d56e20e tamarin-prover: install vim-plugin to nvim/site 2023-03-08 12:32:40 +02:00
github-actions[bot]
f1b48b2a95
Merge master into staging-next 2023-03-07 18:01:12 +00:00
R. RyanTM
02cd0a5dfc
sherpa: 2.2.13 -> 2.2.14 (#220016) 2023-03-07 12:47:54 -05:00
Weijia Wang
3e5f408e73 isabelle: add aarch64-linux support 2023-03-07 18:20:46 +02:00
Martin Weinelt
e3f019bb71 Merge remote-tracking branch 'origin/master' into staging-next 2023-03-07 15:05:00 +01:00
Atemu
acdc303ed7
Merge pull request #219836 from wegank/leo2-darwin 
leo2, statverif: add darwin support
 2023-03-07 13:24:35 +01:00
github-actions[bot]
fa94414f70
Merge master into staging-next 2023-03-07 00:02:41 +00:00
Doron Behar
33c9fd85e5
Merge pull request #219838 from alyaeanyx/qalculate-4.6.0 
{libqalculate, qalculate-gtk, qalculate-qt}: 4.5.1 -> 4.6.0
 2023-03-07 01:11:37 +02:00
Weijia Wang
3d70562dfd leo2: add darwin support 2023-03-07 00:10:09 +02:00
Felix Buehler
d10e69c86b treewide: deprecate isNull 
https://nixos.org/manual/nix/stable/language/builtins.html#builtins-isNull
 2023-03-06 22:40:04 +01:00
Ilan Joselevich
e398da1460
Merge pull request #219606 from wegank/vampire-aarch64 
vampire: unbreak on aarch64-linux
 2023-03-06 22:19:54 +02:00
Martin Weinelt
bcf6c81a88 Merge remote-tracking branch 'origin/master' into staging-next 2023-03-06 16:55:14 +00:00
Samuel Ainsworth
e1fbe85b0a
Merge pull request #218265 from SomeoneSerge/hotfix-nvcc-gcc-incompatibility 
cudaPackages: point nvcc at a compatible -ccbin
 2023-03-06 11:38:18 -05:00
alyaeanyx
2d1959e445 libqalculate, qalculate-gtk: 4.5.1 -> 4.6.0 2023-03-06 15:17:20 +01:00
K900
2fe3640540
Merge pull request #219425 from wegank/gcc12-cleanup 
treewide: remove -lgcc from NIX_LDFLAGS
 2023-03-06 17:05:12 +03:00
github-actions[bot]
a5961d9534
Merge master into staging-next 2023-03-06 12:01:40 +00:00
Weijia Wang
55bb9cd6c0
Merge pull request #219604 from wegank/glsurf-ocaml 
glsurf: migrate to OCaml 4.14
 2023-03-06 11:05:05 +02:00
github-actions[bot]
cb98531909
Merge master into staging-next 2023-03-05 18:01:28 +00:00
Nick Cao
794f34657e
Merge pull request #219625 from NickCao/eigenmath 
eigenmath: init at unstable-2023-03-05
 2023-03-05 23:20:20 +08:00
Martin Weinelt
8a085cd8e3 Merge remote-tracking branch 'origin/master' into staging-next 2023-03-05 15:36:16 +01:00
Weijia Wang
e6725b74f8
Merge pull request #219515 from r-ryantm/auto-update/diamond 
diamond: 2.1.3 -> 2.1.4
 2023-03-05 13:59:24 +02:00
Guillaume Girol
768a866917
Merge pull request #216864 from ShamrockLee/root-debug-info 
root: separateDebugInfo = true
 2023-03-05 10:28:50 +00:00
Weijia Wang
a56529a95f glsurf: fix runtime error 2023-03-05 12:05:39 +02:00
Nick Cao
32b51c198f
eigenmath: init at unstable-2023-03-05 2023-03-05 16:17:38 +08:00
github-actions[bot]
6413316565
Merge master into staging-next 2023-03-05 06:01:04 +00:00
Doron Behar
a1240f6b4a
Merge pull request #219171 from doronbehar/pkg/maxima 
maxima: 5.45.1 -> 5.46.0
 2023-03-05 07:58:10 +02:00
Martin Weinelt
c76553c9a6 Merge remote-tracking branch 'origin/master' into staging-next 2023-03-05 01:14:06 +00:00
Weijia Wang
3796e59136 vampire: unbreak on aarch64-linux 2023-03-05 02:21:12 +02:00
Weijia Wang
cc4169d737 glsurf: migrate to OCaml 4.14 2023-03-05 02:03:44 +02:00
Weijia Wang
1148f28242 cubicle: set env instead of postPatch 2023-03-05 01:44:26 +02:00
Yueh-Shun Li
b96226578e
root: specify separateDebugInfo = true for all pltforms 2023-03-05 03:30:17 +08:00
R. Ryantm
e175a2ea68 diamond: 2.1.3 -> 2.1.4 2023-03-04 15:44:53 +00:00
Weijia Wang
ac62a206b7 root: remove -lgcc from NIX_LDFLAGS 2023-03-04 11:51:34 +02:00
Yueh-Shun Li
c89c22a9c2 root: separateDebugInfo = true on Linux 2023-03-04 15:05:26 +08:00
Martin Weinelt
d0286ecd24 Merge remote-tracking branch 'origin/staging' into staging-next 2023-03-04 01:42:06 +00:00
Someone Serge
d378cc6fb2
opencv4: respect config.cudaCapabilities 
This is needed for faster builds when debugging the opencv derivation,
and it's more consistent with other cuda-enabled packages

-DCUDA_GENERATION seems to expect architecture names, so we refactor
cudaFlags to facilitate easier extraction of the configured archnames
 2023-03-04 00:59:21 +02:00
Justin Bedő
5ba0152b6c
Merge pull request #218998 from r-ryantm/auto-update/picard-tools 
picard-tools: 2.27.5 -> 3.0.0
 2023-03-03 22:26:27 +00:00
Doron Behar
f002f6e8ab wxmaxima: 22.12.0 -> 23.02.1 
Diff: https://github.com/wxMaxima-developers/wxmaxima/compare/Version-22.12.0...23.02.1
 2023-03-02 15:11:08 +02:00
Doron Behar
b53da37836 maxima: 5.45.1 -> 5.46.0 2023-03-02 15:11:00 +02:00