Commit Graph

551 Commits

Author SHA1 Message Date
Shamrock Lee
e23f5f4f92 root: 6.26.8 -> 6.26.10 2022-12-11 18:00:34 +08:00
Shamrock Lee
f2fcf446d0 root: add xrootd support and workaround the xrootd runpath bug 2022-12-11 18:00:32 +08:00
Shamrock Lee
53f8736f10 root: adjust format 2022-12-11 17:45:55 +08:00
Fabian Affolter
7d3c53e6d1 snakemake: rename GitPython 2022-12-05 21:53:53 +01:00
Weijia Wang
280b4b8279
root: fix build on aarch64-linux (#203267) 2022-11-29 01:41:49 -05:00
K900
420fd2d25b graphia: 3.1 -> 3.2 2022-11-26 15:49:07 +03:00
Sandro
2ca694f473
Merge pull request #198552 from wegank/wxgtk-games 2022-11-24 14:21:25 +01:00
Sandro Jäckel
da3200b7b6
Revert "gplates: fix failing build"
This reverts commit 8a236e246a.
2022-11-16 00:29:02 +01:00
yurket
8a236e246a gplates: fix failing build
Started failing after the commit 11ea0e99b7 (Python 3.9->3.10 upgrade) with error:

    CMake Error at .../lib/cmake/Boost-1.75.0/BoostConfig.cmake:141 (find_package):
  Could not find a package configuration file provided by boost_python310

It appears that boost <= 1.78 fails to find Python with double digits in the minor version (like X.YZ)
2022-11-12 11:33:42 -08:00
Weijia Wang
699e05b52a
root5: migrate to gsl (#200455) 2022-11-10 18:59:19 -05:00
Shamrock Lee
a664ec27f4 root: add package test test-thisroot 2022-11-10 09:27:35 +08:00
Shamrock Lee
7f91dec5dd root: wrap the executable and patch thisroot.* 2022-11-10 09:23:52 +08:00
Dmitry Kalinkin
25fd03cf72
Merge pull request #200412 from wegank/root-darwin
root: 6.26.06 -> 6.26.08
2022-11-09 18:16:38 -05:00
Weijia Wang
d474e39f7d root: fix build on aarch64-darwin 2022-11-09 21:03:59 +01:00
Weijia Wang
5d5c6ded1a root: 6.26.06 -> 6.26.08 2022-11-09 18:19:45 +01:00
Shamrock Lee
0106a68555
root: enable davix and ssl support (#200096)
This enables CERN ROOT to open file urls with scheme
`davs://` and `https://`.

The inclusion of `openssl` in buildInputs
will increase neither closure size nor rebuild frequency,
since `python3`, which depends on `openssl`, is already a dependency.
2022-11-09 11:31:37 -05:00
Weijia Wang
e0e6444e50 boinc: unbreak on aarch64-linux 2022-11-09 00:59:14 +01:00
Fabian Affolter
cad704eb95 toil: 5.6.0 -> 5.7.1 2022-11-08 12:17:40 +01:00
Weijia Wang
7f0b7f4cf3 fityk: migrate to wxGTK32 2022-11-03 11:49:13 +01:00
github-actions[bot]
886633ba43
Merge master into staging-next 2022-10-15 00:04:00 +00:00
Markus S. Wamser
c9d167f174 pkgs.applications: remove unused args 2022-10-12 16:00:16 +02:00
Franz Pletz
2c10e089b9
root: fix build with libxcrypt 2022-10-09 18:10:46 +02:00
Franz Pletz
6264d94616
root5: fix build with libxcrypt 2022-10-09 18:10:46 +02:00
R. Ryantm
cdfcbf552e simgrid: 3.31 -> 3.32 2022-10-06 15:54:46 +08:00
Theodore Ni
2d3705b141
root: mark broken on aarch64 2022-09-29 17:06:14 -07:00
R. Ryantm
f28b6e5468 snakemake: 7.14.1 -> 7.14.2 2022-09-27 19:16:23 -04:00
R. Ryantm
fe2504c61b snakemake: 7.14.0 -> 7.14.1 2022-09-26 23:13:22 -04:00
Anthony Roussel
341029d5cc
sasview: fix build
Caused by `asscalar` numpy API removal.
See https://github.com/SasView/sasview/pull/2178
2022-09-18 20:42:33 +02:00
Sandro Jäckel
224da23db2 sasview: remove unused input 2022-09-11 16:25:56 +02:00
Dmitry Kalinkin
ea1dcc4f8b
Merge pull request #189926 from veprbl/pr/root_rip_via_setup_hook
root: populate ROOT_INCLUDE_PATH via the setupHook
2022-09-08 19:45:45 -04:00
R. Ryantm
914100fd45 snakemake: 7.12.1 -> 7.14.0 2022-09-08 09:57:07 -04:00
R. Ryantm
76da07ebfb bada-bib: 0.7.2 -> 0.8.0 2022-09-08 04:44:53 +00:00
Dmitry Kalinkin
0fe6d6f6b9
root: populate ROOT_INCLUDE_PATH via the setupHook 2022-09-05 18:47:48 -04:00
tpdcl
4f39ada71b
FAHClient: 7.6.13 -> 7.6.21 (#188476)
This time also in master so it can get in unstable
2022-08-29 19:51:58 +02:00
Artturi
79c42aa06c
Merge pull request #186564 from Artturin/crossevalfixes
Fixes for cross-compilation
2022-08-27 17:49:00 +03:00
Jonas Heinrich
fbf9205774
Merge pull request #185912 from r-ryantm/auto-update/fityk
fityk: 1.3.1 -> 1.3.2
2022-08-21 21:34:00 +02:00
Artturin
c6568adb00 treewide: makeWrapper buildInputs to nativeBuildInputs
most found with https://github.com/siraben/nix-lint
2022-08-16 13:14:19 +03:00
Christian Kögler
121d695571
Merge pull request #183328 from r-ryantm/auto-update/graphia
graphia: 3.0 -> 3.1
2022-08-15 14:13:00 +02:00
R. Ryantm
7f3ad42166 snakemake: 7.12.0 -> 7.12.1 2022-08-13 16:16:11 -04:00
R. Ryantm
50f7eed980 fityk: 1.3.1 -> 1.3.2 2022-08-10 13:28:43 +00:00
Dmitry Kalinkin
1e64d9a87c
root: 6.26.04 -> 6.26.06 2022-07-31 19:43:07 -04:00
R. Ryantm
4c3caca96d snakemake: 7.9.0 -> 7.12.0 2022-07-31 11:06:29 -04:00
R. Ryantm
8ecdb52267 graphia: 3.0 -> 3.1 2022-07-28 13:49:36 +00:00
Mario Rodas
0f87b2b305
Merge pull request #181123 from avdv/gephi-0.9.6
gephi: 0.9.2 -> 0.9.6
2022-07-24 16:08:03 -05:00
Robert Scott
0b7947c963
Merge pull request #182349 from r-ryantm/auto-update/snakemake
snakemake: 7.8.5 -> 7.9.0
2022-07-21 21:35:04 +01:00
R. Ryantm
7a5b52ff26 snakemake: 7.8.5 -> 7.9.0 2022-07-21 15:24:14 +00:00
Bobby Rong
b536142220
Merge pull request #181946 from Luflosi/update/boinc
boinc: 7.20.1 -> 7.20.2
2022-07-21 20:01:43 +08:00
Dmitry Kalinkin
3518b4ac5a
Merge pull request #182037 from veprbl/pr/root_6_26_04
root: 6.24.06 -> 6.26.04
2022-07-20 17:50:18 -04:00
Artturin
6b8c65acd9 treewide: fix fallout from 'cmake/setup-hook.sh: Don't skip build-RPATH' 2022-07-19 17:47:13 +03:00
Dmitry Kalinkin
b3df13e2d7
root: 6.24.06 -> 6.26.04 2022-07-18 23:14:15 -04:00
Luflosi
bf27ab825e
boinc: 7.20.1 -> 7.20.2
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.20%2F7.20.2
2022-07-18 14:33:23 +02:00
Vladimír Čunát
0879ac5da6
Merge branch 'master' into staging-next 2022-07-16 20:07:05 +02:00
Mario Rodas
279e1daf20
Merge pull request #180821 from r-ryantm/auto-update/nextinspace
nextinspace: 2.0.3 -> 2.0.5
2022-07-16 09:46:22 -05:00
Artturin
a584822577 treewide: fix fallout from 'cmake/setup-hook.sh: Don't skip build-RPATH'
f7414e2
2022-07-15 02:50:09 +03:00
Vladimír Čunát
8169a7fce0
Merge branch 'master' into staging-next 2022-07-13 09:57:41 +02:00
Jonas Heinrich
2349dd5cb2 graphia: 2.2 -> 3.0 2022-07-12 10:01:03 -04:00
github-actions[bot]
5f2ff17a45
Merge master into staging-next 2022-07-11 18:01:16 +00:00
Thomas Tuegel
e1e0d5d513
Merge pull request #108496 from knedlsepp/cmake-rpath
cmake/setup-hook.sh: Don't skip build-RPATH
2022-07-11 10:18:47 -05:00
Claudio Bley
16a1651a4a gephi: 0.9.2 -> 0.9.6
Gephi now requies Java 11+.
2022-07-11 16:45:30 +02:00
Bobby Rong
06e537ad60
bada-bib: add missing libadwaita and gtksourceview5 dependency 2022-07-11 13:46:57 +08:00
R. Ryantm
58d35e01aa nextinspace: 2.0.3 -> 2.0.5 2022-07-09 07:19:07 +00:00
R. Ryantm
4975868d54 bada-bib: 0.6.2 -> 0.7.2 2022-07-06 00:52:29 +00:00
R. RyanTM
200d8c500a
snakemake: 7.8.3 -> 7.8.5 (#179874) 2022-07-04 12:24:26 -04:00
Josef Kemetmüller
bcd7045998 treewide: Remove now-unneeded LD_LIBRARY_PATH in cmake derivations
Since the setting DCMAKE_SKIP_BUILD_RPATH was disabled, we can now run
the checkPhase of cmake derivations without having to tweak the
LD_LIBRARY_PATH anymore.
2022-07-04 03:49:01 +03:00
Luflosi
6eea86625e
boinc: 7.20.0 -> 7.20.1
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.20%2F7.20.1
2022-07-02 15:56:06 +02:00
Lassulus
c58d141dcc
Merge pull request #177268 from Luflosi/update/boinc
boinc: 7.18.1 -> 7.20.0
2022-06-23 21:14:33 +02:00
Robert Scott
070028a960 fahcontrol: remove autoPatchelfHook argument
this is confusing as it is not used - the package .deb only contains
python (and bash)
2022-06-23 18:38:23 +01:00
Robert Scott
466c2e342a treewide/applications: add sourceType binaryNativeCode for many packages 2022-06-23 18:38:19 +01:00
R. Ryantm
671aeb2769 snakemake: 7.8.2 -> 7.8.3 2022-06-21 19:01:53 +00:00
Luflosi
0045581c23
boinc: 7.18.1 -> 7.20.0
https://github.com/BOINC/boinc/releases/tag/client_release%2F7.20%2F7.20.0
2022-06-11 11:26:45 +02:00
R. Ryantm
acf23020f0 snakemake: 7.8.1 -> 7.8.2 2022-06-09 19:49:56 +00:00
Robert Scott
3b6bc4b69c treewide: set sourceProvenance for packages containing downloaded jars
these are the easily identifiable cases and will not be comprehensive
2022-06-04 19:47:57 +01:00
R. Ryantm
e9fb739e59 snakemake: 7.8.0 -> 7.8.1 2022-06-02 01:20:40 +00:00
R. RyanTM
7a54d237e0
snakemake: 7.7.0 -> 7.8.0 (#174592) 2022-05-30 10:51:36 -04:00
Rick van Schijndel
433701147a
treewide: pkgs/applications: mark broken for aarch64-linux 2022-05-30 13:42:58 +02:00
Rick van Schijndel
90869787c5 boinc: mark broken for aarch64 2022-05-29 10:56:03 +02:00
Fabian Affolter
44b8ec5ccb
Merge pull request #173416 from r-ryantm/auto-update/snakemake
snakemake: 7.6.2 -> 7.7.0
2022-05-17 20:39:48 +02:00
R. Ryantm
a52b64015a snakemake: 7.6.2 -> 7.7.0 2022-05-17 16:18:18 +00:00
Dmitry Kalinkin
fdf0806386
root5: fix build with recent gcc 2022-05-16 11:53:42 -04:00
R. Ryantm
5b55f851ac snakemake: 7.6.1 -> 7.6.2 2022-05-07 16:16:09 +00:00
R. Ryantm
166b1378fe snakemake: 7.5.0 -> 7.6.1 2022-05-04 16:06:44 +00:00
Fabian Affolter
8b176291d7 snakemake: 6.15.5 -> 7.5.0 2022-05-01 13:02:10 +02:00
Serge K
1248ea16e1
colmap: fix for cuda11.6/gcc11 (#169623)
* colmap: force nvcc std=c++14 after gcc11 bump

* colmap: optional -> optionals

* colmap: sha256 -> hash

* colmapWithCuda: force CUDA_ENABLED=ON safeguard

* colmapWithCuda: add opengl runpath
2022-04-27 16:09:30 -07:00
Ryan Mulligan
f05a748058
Merge pull request #169246 from r-ryantm/auto-update/bada-bib
bada-bib: 0.6.1 -> 0.6.2
2022-04-24 13:58:11 -07:00
veprbl
2511bad8aa
Merge pull request #168973 from veprbl/pr/root5_glibc_fix
root5: fix for glibc
2022-04-19 14:56:09 -04:00
R. Ryantm
9919952421 bada-bib: 0.6.1 -> 0.6.2 2022-04-19 00:53:01 +00:00
Dmitry Kalinkin
81f9e28844
root5: fix for glibc 2022-04-16 17:20:16 -04:00
Fabián Heredia Montiel
5275050ab0 fityk: add -std=c++11 flag for gcc11 and later 2022-04-16 11:11:46 -05:00
github-actions[bot]
bf63dd7434
Merge staging-next into staging 2022-04-10 18:01:38 +00:00
Lassulus
973fa1917c
Merge pull request #162300 from r-ryantm/auto-update/cwltool
cwltool: 3.1.20220221074232 -> 3.1.20220224085855
2022-04-10 13:37:54 +01:00
Martin Weinelt
bf1914e12a Merge remote-tracking branch 'origin/staging-next' into staging 2022-04-05 04:05:02 +02:00
Ryan Mulligan
b56cf0ed6a
Merge pull request #167069 from r-ryantm/auto-update/bada-bib
bada-bib: 0.6.0 -> 0.6.1
2022-04-04 13:51:15 -07:00
Martin Weinelt
f95a3d1140 Merge remote-tracking branch 'origin/staging-next' into staging 2022-04-04 00:46:25 +02:00
R. Ryantm
2a5b81d50f bada-bib: 0.6.0 -> 0.6.1 2022-04-03 19:11:54 +00:00
ajs124
f9ad6fb744 openmvs: remove after being marked broken for over two years
It was marked in commit 796050fedd by Michael Raskin on 2019-04-14 (commited on 2019-04-14)
2022-04-03 16:14:19 +01:00
github-actions[bot]
9aa014c46a
Merge staging-next into staging 2022-03-31 12:02:10 +00:00
R. Ryantm
53dff2f7c8 rink: 0.6.2 -> 0.6.3 2022-03-28 18:13:37 +00:00
github-actions[bot]
8357b101a5
Merge staging-next into staging 2022-03-25 12:02:05 +00:00
davidak
6ea8d5ee71
Merge pull request #165297 from Stunkymonkey/treewide-pname-version-17
treewide: rename name to pname&version
2022-03-24 16:38:33 +01:00
Doron Behar
4a02c56a7d
Merge pull request #164746 from ncfavier/makeWrapper-chdir 2022-03-24 13:51:27 +02:00