Commit Graph

405 Commits

Author SHA1 Message Date
Markus Kowalewski
70867a92f6
arpack: fix tests on darwin 2019-04-03 10:48:52 +02:00
Markus Kowalewski
9a60a65249
arpack: 3.6.3 -> 3.7.0
* switch to FetchFromGitHub
* switch from autotools to cmake
* add eigen to input (is now required)
2019-04-03 10:48:52 +02:00
Markus Kowalewski
734c6c21cb
mkl: 2019.0.117 -> 2019.3.199 2019-04-01 21:50:23 +02:00
Markus Kowalewski
fa28a838f3
openblas: fix aarch64 build 2019-03-31 12:19:41 +02:00
Markus Kowalewski
4c74ee948e
clblas: turn of gtest, fix build
clblas does not work anymore with gmock 1.8.1.
Turning off the test suite fixes the build.
2019-03-29 13:59:45 +01:00
sveitser
e29e315c5f
cudnn_cudatoolkit_10: 7.3.1 -> 7.4.2 2019-03-28 21:49:13 +08:00
Anders Kaseorg
ae6b9dcb0e or-tools: 6.10 -> 7.0
Signed-off-by: Anders Kaseorg <andersk@mit.edu>
2019-03-26 17:04:03 -07:00
Anders Kaseorg
08e9273e29 or-tools: Add Python bindings
Signed-off-by: Anders Kaseorg <andersk@mit.edu>
2019-03-26 17:04:03 -07:00
R. RyanTM
e14d70d955 primesieve: 7.3 -> 7.4 (#57375)
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/primesieve/versions
2019-03-12 22:43:56 +01:00
R. RyanTM
cac06fc53d ipopt: 3.12.11 -> 3.12.12
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ipopt/versions
2019-03-03 20:47:42 +01:00
Averell Dalton
d7806fe4ed openblas: adjust makeFlags handling 2019-02-23 09:13:57 +01:00
Markus Kowalewski
dbf5135385
scalapack: update meta data
* Set platform from linux -> x86_64-linux
  Scalapack does not seem to run properly on ARM (failing tests)

* Add markuskowa as maintainer
2019-02-21 15:08:33 +01:00
Markus Kowalewski
4aa90ac089
scalapack: add openmpi4 compatibility patch 2019-02-21 15:08:32 +01:00
Will Dietz
32322da1a6 openblas: fix config breakage introduced for configs using 'false'
My earlier change mistakenly expected `toString false` to produce '0'
instead of the empty string, leading to unexpected config changes.

Intended to address issue mentioned here and in following discussion:

https://github.com/NixOS/nixpkgs/pull/53972#issuecomment-459981602

Sorry, folks!

(special-case handling of bools here makes this "cleanup" a bit
 less of an obvious win but hopefully still preferable overall :))

-----------

makeFlags in resulting derivation, according to this one-liner:

$ nix show-derivation -f . openblas|jq ".[].env.makeFlags"

before:
"BINARY=64 CC=cc CROSS= DYNAMIC_ARCH=1 FC=gfortran HOSTCC=cc INTERFACE64=1 NO_BINARY_MODE= NO_STATIC=1 NUM_THREADS=64 PREFIX=/1rz4g4znpzjwh1xymhjpm42vipw92pr73vdgl6xs1hycac8kf2n9 TARGET=ATHLON USE_OPENMP=1"

after:
"BINARY=64 CC=cc CROSS=0 DYNAMIC_ARCH=1 FC=gfortran HOSTCC=cc INTERFACE64=1 NO_BINARY_MODE=0 NO_STATIC=1 NUM_THREADS=64 PREFIX=/1rz4g4znpzjwh1xymhjpm42vipw92pr73vdgl6xs1hycac8kf2n9 TARGET=ATHLON USE_OPENMP=1"

Without knowing how `placeholder` works, it seems interesting if
entirely unrelated that the `PREFIX` is same for both! :). TIL.
2019-02-17 19:51:55 +01:00
Dylan Simon
e69fdc1715 sympow: fix patch url to working revision (#55778)
fix_pointer_initialization2.patch no longer exists on trunk -- download
from a fixed older revision where it did.
2019-02-14 21:10:37 +01:00
Matthew Bauer
2433c575f0 openblas: fix on linux
This reverse changes made cfc4313 which broke builds on linux. Still
not sure why this broke Linux, but we can investigate it later.
“buildPackages.stdenv.cc” shouldn’t be put in nativeBuildInputs in
general. Either way, this restores hashes to before that commit.

thanks to @jethrokuan
2019-02-10 20:16:16 -05:00
Matthew Bauer
cfc43138cb openblas: fix on darwin
The openblas script relies on CC=clang for succesfully compiling on
Darwin systems. This seems like bad behavior, but we get things like
https://hydra.nixos.org/build/87657058 otherwise.

Fixes #55536.
2019-02-10 18:49:04 -05:00
Vladimír Čunát
c40f211499
Merge branch 'staging-next'
It's not completely without regressions, but ATM it seems to bring more
upsides than downsides and the iteration is too long already.
2019-02-10 14:20:49 +01:00
Orivej Desh
59cd3ee895 nccl: 2.1.4 -> 2.4.2-1 (#55292) 2019-02-10 01:20:04 +00:00
Vladimír Čunát
ff101946a8
Merge branch 'master' into staging-next
Hydra nixpkgs: ?compare=1503899
2019-02-06 14:24:46 +01:00
Guillaume Bouchard
9f0ee6c606 primesieve: init at 7.3 2019-02-04 13:03:50 +01:00
Vladimír Čunát
5effa4e0f9
Merge branch 'master' into staging-next
Comments on conflicts:
- llvm: d6f401e1 vs. 469ecc70 - docs for 6 and 7 say the default is
  to build all targets, so we should be fine
- some pypi hashes: they were equivalent, just base16 vs. base32
2019-02-01 09:22:29 +01:00
Markus Kowalewski
57c37456db
openblas: make the optimazation target overridable 2019-01-29 14:34:02 +01:00
Will Dietz
1f0467005d openblas: 0.3.4 -> 0.3.5, rework a bit (#53972)
* openblas: simplify a bit, fix doCheck so tests are enabled non-cross.

* doCheck should be 'true' in (at least) the non-cross case,
  this looks like an inverted check that's largely benign
* doCheck will be set to 'false' in the cross case anyway,
  makeDerivation does this IIRC
* targetPrefix can be used without checking, probably by design

Derivation hash does change but no "real" functionality change intended.

* openblas: nix types for config attrs (hash-preserving)

* openblas: more nix-ification, merge in cross attrs, prefer to always set

(but set appropriately for cross and non-cross cases both)

* I'm not sure what NO_BINARY_MODE does,
  this change now sets explicitly false in the non-cross scenario
  (previously unset unless cross).
* Drop musl NO_AFFINITY case, will be removed in upgrade shortly

* openblas: 0.3.4 -> 0.3.5
2019-01-15 16:36:07 +01:00
Frederik Rietdijk
05ee1015bb openblas: fix cross-compilation 2019-01-15 10:11:33 +01:00
Timo Kaufmann
04ba895ecd
suitesparse: 5.3.0 -> 5.4.0 (#53128) 2019-01-01 15:47:55 +01:00
Silvan Mosberger
eb864397a0
Merge pull request #52508 from tkonolige/fix_suitesparse_darwin
suitesparse: Fix darwin support
2018-12-31 03:24:48 +01:00
agracie
a3fc481b76 mkl: fix hash on Darwin 2018-12-26 20:57:08 -05:00
Bas van Dijk
72eae72223 openblas: fix build on x86_64-darwin
See: https://github.com/xianyi/OpenBLAS/issues/1926
2018-12-20 13:25:44 +01:00
Benjamin Hipple
6206a342e0 mkl: include Intel's libiomp.so in the MKL RPM unpack
Since Intel's default openmp implementation is available in the same src
tarball, we can just include it in the package. This means that `mkl` now "just
works" without any environment variables, fragile setup-hooks, or forced
propagation.

Since the openmp implementation is only needed at runtime (and for test cases),
users can substitute a different one if they prefer by exporting it with
`LD_PRELOAD`, which is how Intel recommends handling this. If they do not do so,
`libiomp.so` lives next to `libmkl_rt.so` and thus will be in the RPATH as a
sane default.

Since this still comes from the same src tarball, we can ship it without losing
the fixed-output derivation; likewise, since Hydra is not building or caching
these, shipping these proprietary packages costs no bandwidth for the nix
community.
2018-12-19 22:05:22 +01:00
Tristan Konolige
00005ce0bd suitesparse: Fix darwin support
Suitesparse libraries would end up containing references to the build
directory. fixDarwinDylibNames appears to not fix this problem. We
manually use intall_name_tool to set the library paths correctly.
2018-12-18 18:08:17 -07:00
Frederik Rietdijk
4deb04a97a openblas: 0.3.3 -> 0.3.4 2018-12-07 15:21:25 +01:00
Frederik Rietdijk
a510aa2672 Merge master into staging-next 2018-12-03 12:18:43 +01:00
Will Dietz
cd14ad53c3 or-tools: appease warning re:python3, try testing 2018-12-01 13:38:16 -06:00
Will Dietz
046e7980f9 or-tools: parallel 2018-12-01 13:38:16 -06:00
Will Dietz
70c2e88c96 or-tools: touchup 2018-12-01 13:38:16 -06:00
Will Dietz
c4feda8b01 or-tools: v6.9.1 -> v6.10
https://github.com/google/or-tools/releases/tag/v6.10
2018-12-01 13:38:16 -06:00
Frederik Rietdijk
fed881e510 Merge staging-next into staging 2018-11-21 12:39:46 +01:00
Matthew Bauer
d492f53faf
Merge pull request #50527 from matthewbauer/ninja-check-phase
Add check phase to ninja setup hook
2018-11-20 16:55:12 -06:00
Timo Kaufmann
6059bf842a
Merge pull request #49994 from r-ryantm/auto-update/python3.6-cvxopt
python36Packages.cvxopt: 1.2.1 -> 1.2.2
2018-11-20 14:25:43 +01:00
Matthew Bauer
285eb9a894 cmake: set CTEST_OUTPUT_ON_FAILURE globally
We should always use this.
2018-11-19 16:16:16 -06:00
Matthew Bauer
2c47a4229f treewide: remove ctest usages
These are already in the generated makefiles!
2018-11-18 19:31:02 -06:00
Orivej Desh
e66d263f6b eigen3_3: move version overrides to all-packages.nix 2018-11-18 10:53:25 +00:00
Daiderd Jordan
5b8c4b0646
suitesparse: fixup darwin libraries
The build created libraries with an install_name that points to the
build directory instead of the installation prefix.  Causing errors like
this when other packages try to link against it's libraries.

    Library not loaded: /private/tmp/nix-build-suitesparse-5.3.0.drv-0/SuiteSparse/lib/libcholmod.3.0.12.dylib
2018-11-13 00:25:32 +01:00
markuskowa
45a4adb1b3
Merge branch 'master' into atlas-remove 2018-11-11 02:22:04 +01:00
Markus Kowalewski
06f3676770
scalapack: set platform to linux 2018-11-11 02:17:20 +01:00
markuskowa
bf8c031074
Merge pull request #49199 from markuskowa/fet-scalapack
scalapack: switch to openblas and add test
2018-11-05 21:12:01 +01:00
Matthew Bauer
95373d3634 atlas: remove
atlas is broken and can apparently be removed.

Fixes #49594
2018-11-04 20:23:12 -06:00
Patrick Hilhorst
4cfeb9da53
cudatoolkit, cudnn: many updates
cudatoolkit_9_1: 9.1.85.1 -> 9.1.85.3
cudatoolkit_9_2: init at 9.2.148.1
cudatoolkit_9: 9.1.85.1 -> 9.2.148.1
cudatoolkit_10, cudatoolkit_10_0: init at 10.0.130

cudnn_cudatoolkit_9_0: 7.0.5 -> 7.3.0
cudnn_cudatoolkit_9_1: init at 7.1.3
cudnn_cudatoolkit_9_2: init at 7.2.1
cudnn_cudatoolkit_9: 7.0.5 (9.1) -> 7.3.1 (9.2)
cudnn_cudatoolkit_10, cudnn_cudatoolkit_10_0: init at 7.3.1
2018-10-30 19:09:20 +01:00
Markus Kowalewski
41a579aa68
scalapack: switch to openblas + add test
* change from blas,lapack to openblas
* add check phase
* enable parallel building
* fix license
2018-10-27 01:06:07 +02:00
Mateusz Kowalczyk
02fb26136c or-tools: new package (v6.9.1) 2018-10-25 14:15:13 +09:00
Mateusz Kowalczyk
b41f8936b9 QuadProgpp: Add new package.
Necessary for #48895.
2018-10-24 09:19:26 +09:00
Michael Raskin
acb7d85993 lrs: init at 7.0 2018-10-23 11:41:29 +03:00
Renaud
0cc07aeee6
Merge pull request #48172 from jluttine/cholmod-extra-1.2.0
cholmod-extra: init at 1.2.0
2018-10-21 17:28:30 +02:00
Thomas Tuegel
2e4397f631
Merge pull request #35213 from jluttine/suitesparse-5.1.2
suitesparse: 4.4.4 -> 5.3.0
2018-10-20 08:07:27 -05:00
Jörg Thalheim
351319e557
Merge pull request #48419 from r-ryantm/auto-update/ipopt
ipopt: 3.12.10 -> 3.12.11
2018-10-15 21:36:42 +01:00
Matthew Bauer
0b298d516a
Merge pull request #47182 from bhipple/add/mkl
mkl: init at 2019.0.117
2018-10-15 15:17:57 -05:00
R. RyanTM
ab050719ba ipopt: 3.12.10 -> 3.12.11
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ipopt/versions
2018-10-14 08:11:02 -07:00
Jaakko Luttinen
f065de344d
cholmod-extra: init at 1.2.0 2018-10-10 22:08:25 +03:00
Jaakko Luttinen
8fb27604fb
suitesparse: 4.4.4 -> 5.3.0 2018-10-10 07:36:00 +03:00
Timo Kaufmann
65589faa2f zn_poly: 0.9 -> 0.9.1
Sage has taken over maintenance since the original author no longer
maintains the project.
2018-10-05 15:50:30 +02:00
Benjamin Hipple
0b82df8dbe Convert entire mkl package to a fixed-output derivation 2018-10-04 13:16:20 +00:00
Benjamin Hipple
ba02a2c371 Add Darwin as a supported platform 2018-10-02 22:53:48 -04:00
Daiderd Jordan
1383c08f2c
Merge branch 'master' into staging-next 2018-10-01 19:42:07 +02:00
R. RyanTM
0e5e4aed06 arpack: 3.5.0 -> 3.6.3
Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/arpack/versions
2018-09-26 11:28:59 +02:00
John Ericson
c701d6cb21 Merge remote-tracking branch 'upstream/master' into staging 2018-09-25 14:20:27 -04:00
Will Dietz
8a0a34f766 openblas: try leaving openmp enabled w/musl 2018-09-25 00:08:17 -05:00
Dmitry Vyal
81caec3568 openblas-0.3.1 -> 0.3.3 2018-09-23 09:35:29 +02:00
Benjamin Hipple
d7c1d04af4 mkl: init at 2019.0.117
This packags the Intel Math Kernel library on x86-64 platforms, which is a
dependency for many data science and machine learning packages.

Upstream, Intel provides proprietary binary RPMs with a permissive
redistribution license. These have been repackaged in both Debian and Anaconda,
so we are not the first distribution to redistribute.
2018-09-22 15:28:39 -04:00
John Ericson
7319013ea1 Merge remote-tracking branch 'upstream/master' into staging 2018-09-18 16:55:42 -04:00
Christopher Ostrouchov
e34a9fff1f scalapack: init at 2.0.2 (#46610)
Added scalapack with flexibility to choose blas, lapack, and mpi
implementation.
2018-09-13 21:27:47 +02:00
Uli Baum
79d9145469 parmetis: set license to unfree
generic unfree license fits best
2018-09-13 21:10:40 +02:00
Christopher Ostrouchov
3c2a74719a parmetis: init at 4.0.3 (#46615) 2018-09-13 21:02:17 +02:00
Daiderd Jordan
89e52157c8
Merge pull request #46584 from LnL7/darwin-broken-a
broken darwin packages (a)
2018-09-13 00:05:42 +02:00
Josef Kemetmüller
d726c0ff1d scs: Fix darwin build
Additionally we make the unit-test deterministic by specifying a seed
instead of using something random.
2018-09-12 20:58:26 +02:00
Daiderd Jordan
f1542f612b
atlas: mark broken on darwin
Started to fail since 3.10.3.

    /private/tmp/nix-build-atlas-3.10.3.drv-0/ATLAS/build/bin/ATLrun.sh: line 4: 31119 Segmentation fault: 11  $atldir/$*
    make[3]: *** [Makefile:1695: ssanity_test] Error 139

/cc ZHF #45961
2018-09-12 20:50:54 +02:00
Timo Kaufmann
408eacbc89 openblas: fix pkg-config alias name
Turns out the filename is important. It should be `cblas`, not
`openblas-cblas`.
2018-09-03 23:57:45 +02:00
Robert Schütz
93550cbddf Merge branch 'master' into staging-next 2018-08-31 17:32:48 +02:00
John Ericson
2c2f1e37d4 reewide: Purge all uses stdenv.system and top-level system
It is deprecated and will be removed after 18.09.
2018-08-30 17:20:32 -04:00
Robert Schütz
a9780a095b Merge branch 'master' into staging-next 2018-08-30 21:56:13 +02:00
Jan Tojnar
c1e53166ad
Revert "sympow: don't use placeholder"
This reverts commit bae15c811f.
2018-08-30 18:18:30 +02:00
Timo Kaufmann
c614c15f93
Merge pull request #45257 from timokau/openblas-pc
openblas: add pkg-config aliases
2018-08-26 20:13:19 +02:00
Benjamin Hipple
291de70ed6 scs: init at 2.0.2 (#45294) 2018-08-23 23:26:41 +02:00
Timo Kaufmann
26d5d030fe openblas: add pkg-config aliases 2018-08-21 16:39:57 +02:00
Timo Kaufmann
8014c7f186
Merge pull request #45013 from jbaum98/fflas-ffpack_darwin
fflas-ffpack: Add darwin support
2018-08-19 16:24:52 +02:00
Jake Waksbaum
8374400cec fflas-ffpack: Add darwin support 2018-08-18 20:28:06 +00:00
Benjamin Hipple
65bb0b23b9 Add platforms.all 2018-08-18 12:11:06 -04:00
Benjamin Hipple
460029cf94 ecos: init at 2.0.6 2018-08-18 03:38:50 +00:00
Vladimír Čunát
cbabebcc2e
Merge branch 'master' into staging-next
Hydra: ?compare=1473892
2018-08-17 13:45:21 +02:00
Jake Waksbaum
c0c854da95 zn_poly: Add darwin support 2018-08-14 00:49:42 -04:00
Vladimír Čunát
00df25ee57
Merge branch 'master' into staging-next
Hydra: ?compare=1472947
2018-08-12 10:33:41 +02:00
Jake Waksbaum
6385e5ffda lcalc: Add darwin support (#44850) 2018-08-10 09:53:52 +02:00
Frederik Rietdijk
d9fa74ba78 Merge master into staging 2018-08-09 18:28:15 +02:00
Timo Kaufmann
aabc55e154 libhomfly: init at 1.02r5
libhomfly is a new standard package for sage. See
https://trac.sagemath.org/ticket/25705
2018-08-05 16:50:33 +02:00
Timo Kaufmann
34c2f4150b libbraiding: init at 1.0
libbraiding is a new standard package for sage. See
https://trac.sagemath.org/ticket/25705
2018-08-05 16:50:32 +02:00
Timo Kaufmann
e550e5d0c7 lcalc: apply c++11 patch 2018-08-04 14:22:29 +02:00
John Ericson
db965063b3 treewide: Make configureFlags lists 2018-08-03 17:06:03 -04:00
Frederik Rietdijk
ad47d658d1 Merge master into staging-next 2018-07-21 19:43:53 +02:00
Jörg Thalheim
218298b30f
Merge branch 'master' into unused5 2018-07-21 15:41:22 +01:00
volth
52f53c69ce pkgs/*: remove unreferenced function arguments 2018-07-21 02:48:04 +00:00