Mario Rodas
c9ce292597
Merge pull request #84383 from r-ryantm/auto-update/gmsh
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gmsh: 4.5.4 -> 4.5.6
2020-04-05 20:03:05 -05:00
R. RyanTM
b43965986f
gmsh: 4.5.4 -> 4.5.6
2020-04-05 19:28:16 +00:00
Vincent Laporte
d6a8d0ca5b
coq_8_11: 8.11.0 → 8.11.1
2020-04-05 15:32:32 +02:00
Frederik Rietdijk
866c5aa090
Merge master into staging-next
2020-04-05 08:33:39 +02:00
Jan Tojnar
418628e162
dsview: fix build
...
It was using libusb-compat instead of libusb1, and the former no longer propagates the latter.
2020-04-05 01:13:14 +02:00
Timo Kaufmann
02b1f2a2de
Merge pull request #83224 from shnarazk/cadical-pr
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cadical: init at 1.2.1
2020-04-04 15:44:04 +00:00
Narazaki, Shuji
c5a12e33d2
cadical: init at 1.2.1
2020-04-05 00:22:36 +09:00
Jan Tojnar
08cf27e5d9
libsigrok4dsl: fix build
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It was using libusb-compat instead of libusb1, and the former no longer propagates the latter.
2020-04-04 10:50:34 +02:00
Dmitry Kalinkin
99a236b477
Merge pull request #83914 from cgevans/gwyddion-darwin
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gwyddion: support darwin
2020-04-01 21:44:21 -04:00
Constantine Glen Evans
cacbbe92bf
gwyddion: add darwin support
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Gwyddion will build on Darwin, but gnome2.gtkglext is broken there,
and so I am disabling it as an optional dependency here when building
on Darwin.
2020-04-01 17:50:36 -07:00
R. RyanTM
92c8881358
picard-tools: 2.22.0 -> 2.22.2
2020-04-01 17:29:55 +00:00
Timo Kaufmann
83fd89945d
Merge pull request #79661 from luc65r/pkg/cemu
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cemu: init at 1.3
2020-03-31 15:17:33 +00:00
R. RyanTM
3017e6989f
deeptools: 3.3.1 -> 3.4.1
2020-03-30 21:47:32 -07:00
R. RyanTM
cff5adc2fb
snakemake: 5.10.0 -> 5.13.0 ( #83839 )
2020-03-31 00:39:00 -04:00
R. RyanTM
bd245a755f
stacks: 2.41 -> 2.52
2020-03-30 16:13:02 -07:00
Ryan Mulligan
d8c21cb4bc
Merge pull request #83746 from r-ryantm/auto-update/marvin
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marvin: 20.6.0 -> 20.9.0
2020-03-30 06:14:11 -07:00
R. RyanTM
1d349b8512
marvin: 20.6.0 -> 20.9.0
2020-03-30 04:02:45 +00:00
luc65r
8edd400bfb
rofi-calc: init at 1.6 ( #83136 )
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Also:
* maintainers: add albakhamj
* maintainers: add luc65r
* rofi: add plugins argument to wrapper
Co-authored-by: Maciej Krüger <mkg20001@gmail.com>
2020-03-30 01:18:56 +02:00
Maximilian Bosch
9e7c54325e
stellarium: 0.19.3 -> 0.20.0
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https://github.com/Stellarium/stellarium/releases/tag/v0.20.0
2020-03-29 17:56:35 +02:00
Jörg Thalheim
d04396da8b
Merge pull request #82852 from Mic92/cross-build-rust-package
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[WIP] buildRustPackage: enable strictDeps
2020-03-29 14:07:07 +01:00
Guanpeng Xu
d2702c915f
mathematica: 12.0.0 -> 12.1.0
2020-03-29 14:38:33 +02:00
Jörg Thalheim
e841dce44a
rink: fix strict deps build
2020-03-29 12:37:25 +01:00
Constantine Glen Evans
59fbc7acba
gwyddion: 2.48 -> 2.55 (and add options)
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Gwyddion has a large number of optional dependencies. In this update,
those dependencies have been added with options set mostly to true,
and an option (default false) for working Python 2.7 support in the
program and in Python has been added. I have also added myself as a
maintainer as no maintainer is currently set.
2020-03-27 10:56:00 -07:00
Ryan Mulligan
c669d2991b
Merge pull request #83464 from r-ryantm/auto-update/last
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last: 1047 -> 1060
2020-03-27 07:34:18 -07:00
R. RyanTM
bd3fbef804
last: 1047 -> 1060
2020-03-27 04:12:41 +00:00
Ryan Mulligan
8c5f9d0200
Merge pull request #83390 from r-ryantm/auto-update/seaview
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seaview: 5.0 -> 5.0.2
2020-03-26 03:10:56 -07:00
R. RyanTM
4a3ea14b5b
seaview: 5.0 -> 5.0.2
2020-03-26 00:25:29 +00:00
Austin Seipp
517fd073fc
xcircuit: 3.9.73 -> 3.10.12, maintain
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Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-03-25 17:46:15 -05:00
Austin Seipp
765b2fd866
mcy: 2020.03.16 -> 2020.03.21
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Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-03-25 06:46:01 -05:00
Austin Seipp
4808bef486
symbiyosys: 2020.02.11 -> 2020.03.24
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Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-03-25 06:46:01 -05:00
Vincent Laporte
618bca7054
alt-ergo: 2.3.0 → 2.3.1
2020-03-24 20:43:06 -04:00
Mario Rodas
b2df6d541d
lean: 3.7.0 -> 3.7.2
2020-03-22 04:20:00 -05:00
Mario Rodas
baeb670ce2
Merge pull request #82610 from r-ryantm/auto-update/eagle
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eagle: 9.5.2 -> 9.6.0
2020-03-20 06:21:30 -05:00
Vincent Laporte
8dddd8a07f
ocamlPackages.camlp5: 7.10 → 7.11
2020-03-19 18:04:14 -07:00
Claudio Bley
39767f8ae5
foldingathome: Make FAHControl be able to start the FAHViewer ( #82925 )
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The command to run when clicking the button is configurable, but by default it
tries to run `FAHViewer`.
2020-03-19 13:05:54 +00:00
Austin Seipp
2ef42e07fd
mcy: 2020.02.05 -> 2020.03.16
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Now with working web UI dashboard -- but no working GUI (yet!)
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-03-17 17:19:40 -05:00
Austin Seipp
5cd4fd5bc5
symbiyosys: 2020.02.08 -> 2020.02.11
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Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-03-17 17:19:40 -05:00
Austin Seipp
9b43cf3a00
yosys: 2020.02.25 -> 2020.03.16
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- Bump `abc-verifier` (2020.03.05)
- Install `yosys-abc` symlink for tool compatbility
- Various `yosys` expression cleanups
Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-03-17 17:19:37 -05:00
Dmitry Kalinkin
ebe5f10794
kicad: don't build versions with 3d on Hydra
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The hydraPlatforms have to be set on the kicad package itself, that can be
checked using:
echo ":p { inherit kicad kicad-small kicad-unstable; }" | nix repl ./pkgs/top-level/release.nix
This commit disables build of all kicad variants that require downloading
packages3d, which currently fail on hydra with the "Output limit exceeded"
status. This leaves Hydra with only building the kicad-small, which will allow
us to cache the build of kicad-base as well as all libraries except of
packages3d.
2020-03-16 19:45:04 -04:00
Dmitry Kalinkin
68db99ad97
snakemake: 5.9.1 -> 5.10.0
2020-03-14 15:58:24 -07:00
R. RyanTM
bafbfc5a06
eagle: 9.5.2 -> 9.6.0
2020-03-14 20:19:26 +00:00
zimbatm
001be890f7
folding@home: 6.02 -> 7.5.1
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The v7 series is very different.
This commit introduces the 3 packages: fahclient, fahcontrol and
fahviewer. It also rebuilds the NixOS module to map better with the new
client.
2020-03-14 13:01:26 -07:00
Frederik Rietdijk
5175c35a99
Merge pull request #81611 from r-ryantm/auto-update/R
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R: 3.6.2 -> 3.6.3
2020-03-14 14:29:05 +01:00
Josef Kemetmüller
3a8d05747b
qgroundcontrol: Fix build
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This silences some warnings to not run into "Log limit exceeded" on
hydra.
2020-03-14 03:18:39 +00:00
Mario Rodas
c935567de6
lean: 3.6.1 -> 3.7.0
2020-03-14 01:32:58 +00:00
wucke13
c24b9a57c4
getdp: 3.0.4 -> 3.3.0
2020-03-13 04:10:20 +00:00
R. RyanTM
a58d091d8d
verilator: 4.028 -> 4.030
2020-03-12 20:57:34 -05:00
Maximilian Bosch
76821e6f43
geogebra: 5-0-573-0 -> 5-0-574-0
2020-03-12 18:12:57 +01:00
Timo Kaufmann
ba589e24c9
sage: patch for pari 2.11.3
2020-03-12 12:24:41 +01:00
Timo Kaufmann
c4ab541443
pari: backport bug fix
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https://trac.sagemath.org/ticket/29313#comment:4
2020-03-12 12:24:35 +01:00
xaverdh
5ac085c3cc
wxmaxima: 18.02.0 -> 20.02.4 ( #82323 )
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The commit description is 18.02.0 -> 20.02.4, because in the last version bump (1c6a193b3e
2020-03-11 12:07:53 -04:00
Timo Kaufmann
1a6b1fb32a
symmetrica: add timokau to maintainers
2020-03-10 18:10:28 +01:00
Timo Kaufmann
0c875c28c6
symmetrica: 2.0 -> 3.0.1
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This switches to the sagemath fork, since the original upstream is no
longer maintained and sagemath has effectively maintained symmetrica
through patches for a while now. The update fixes one bug in particular
that has caused failures in the sagemath test suite:
https://github.com/NixOS/nixpkgs/issues/81449
https://trac.sagemath.org/ticket/15312
https://trac.sagemath.org/ticket/29061
Regarding the licensing change:
7cf91b3800
2020-03-10 18:10:25 +01:00
Timo Kaufmann
e05e219b31
Merge pull request #82240 from timokau/sage-docutils-0.15-fix
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sage: fix test suite with docutils 0.15
2020-03-10 15:25:22 +00:00
Timo Kaufmann
7133577405
sage: fix test suite with docutils 0.15
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The better way to fix this would be to backport the upstream sphinx
patch:
faedcc48cc
2020-03-10 13:15:41 +01:00
Timo Kaufmann
63ed2bf3c3
Merge pull request #81950 from r-ryantm/auto-update/pari
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pari: 2.11.2 -> 2.11.3
2020-03-09 17:31:14 +00:00
Michael Raskin
bbab73266d
Merge pull request #80719 from mucaho/feature/clingcon_init
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clingcon: init at 3.3.0
2020-03-09 07:42:38 +00:00
mucaho
202c2a8eff
clingcon: init at 3.3.0
2020-03-08 19:21:55 +01:00
Maximilian Bosch
84f862ed91
Merge pull request #81796 from JohnAZoidberg/satallax-gcc9
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satallax: Fix build with GCC9
2020-03-08 16:12:40 +01:00
Gabriel Ebner
d7a68e9bce
Merge pull request #82028 from r-ryantm/auto-update/qalculate-gtk
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qalculate-gtk: 3.7.0 -> 3.8.0
2020-03-08 13:31:00 +01:00
Frederik Rietdijk
0eb0ddc4db
Merge staging-next into master
2020-03-08 08:11:01 +01:00
R. RyanTM
e6f5bb8dc4
qalculate-gtk: 3.7.0 -> 3.8.0
2020-03-08 00:14:22 +00:00
Vincent Laporte
dcfccdfc33
acgtk: 1.5.0 → 1.5.1 ( #81539 )
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Co-authored-by: Jon <jonringer@users.noreply.github.com>
2020-03-07 09:56:18 +01:00
R. RyanTM
6528554396
pari: 2.11.2 -> 2.11.3
2020-03-07 02:43:40 +00:00
Gabriel Ebner
8428f5bb4a
elan: v0.8.0 tag was force-pushed by upstream
2020-03-06 15:35:37 +01:00
Gabriel Ebner
70e5428d66
elan: 0.7.5 -> 0.8.0
2020-03-06 14:28:36 +01:00
Joachim Breitner
2d2a5a9b63
js_of_ocaml: 3.4.0 -> 3.5.2 ( #75766 )
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drive-by contributions, as I was playing around with this (it has better
support for the `num` library, it seems.)
js_of_ocaml: 3.4.0 -> 3.5.2
ocamlPackages.js_of_ocaml-ppx_deriving_json: use ppxlib-0.12.0
ocamlPackages.eliom: 6.8.0 → 6.10.1
ocamlPackages.ocsigen-toolkit: 2.2.0 → 2.5.0
ocamlPackages.ocsigen-start: 2.7.0 → 2.16.1
Co-authored-by: Vincent Laporte <Vincent.Laporte@gmail.com>
2020-03-06 07:42:04 +01:00
Frederik Rietdijk
188c3a4d03
Merge staging-next into staging
2020-03-06 07:09:30 +01:00
Mario Rodas
7597bdd59b
Merge pull request #81783 from r-ryantm/auto-update/gmsh
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gmsh: 4.5.2 -> 4.5.4
2020-03-05 08:31:38 -05:00
Mario Rodas
1196a5c7a7
Merge pull request #81722 from r-ryantm/auto-update/workcraft
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workcraft: 3.2.5 -> 3.2.6
2020-03-05 07:42:25 -05:00
Daniel Schaefer
bc56175034
satallax: Fix build with GCC9
2020-03-05 05:16:49 +01:00
R. RyanTM
9974067129
gmsh: 4.5.2 -> 4.5.4
2020-03-05 00:20:08 +00:00
R. RyanTM
adcdd7b0a7
gromacs: 2020 -> 2020.1
2020-03-04 23:10:39 +00:00
Jan Tojnar
1a44e325d2
Merge branch 'staging-next' into staging
2020-03-04 21:24:05 +01:00
R. RyanTM
86e6080daf
workcraft: 3.2.5 -> 3.2.6
2020-03-04 13:41:09 +00:00
Mario Rodas
5760e001ca
Merge pull request #81706 from r-ryantm/auto-update/picard-tools
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picard-tools: 2.21.8 -> 2.22.0
2020-03-04 07:26:05 -05:00
R. RyanTM
343ec80712
picard-tools: 2.21.8 -> 2.22.0
2020-03-04 09:58:40 +00:00
Gabriel Ebner
0d470dc5ea
Merge pull request #81692 from r-ryantm/auto-update/lean
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lean: 3.6.0 -> 3.6.1
2020-03-04 10:32:38 +01:00
R. RyanTM
5b833c08ef
lean: 3.6.0 -> 3.6.1
2020-03-04 06:26:01 +00:00
Aiken Cairncross
3db82f6fc3
python3Packages.monosat: Fix hash
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PR #81562 inadvertently broke these builds
2020-03-03 11:02:23 -08:00
markuskowa
dbb9fab27f
Merge pull request #81604 from markuskowa/upd-octopus
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octopus: 9.1 -> 9.2
2020-03-03 12:45:16 +01:00
R. RyanTM
faa5c3bde3
R: 3.6.2 -> 3.6.3
2020-03-03 11:34:22 +00:00
markuskowa
4822d61252
Merge pull request #80977 from r-ryantm/auto-update/quantum-espresso
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quantum-espresso: 6.4.1 -> 6.5
2020-03-03 11:09:30 +01:00
Markus Kowalewski
eebd6fe75a
octopus: 9.1 -> 9.2
2020-03-03 10:54:23 +01:00
Aiken Cairncross
2148a154c6
python3Packages.monosat: Fix Python 3.8 build
2020-03-03 07:40:57 +01:00
Brenton Horne
b07eb54048
marvin: 20.4.0 -> 20.6.0
2020-03-02 21:50:25 +01:00
Jan Tojnar
f27031f48f
Merge pull request #81063 from NixOS/netpbm
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netpbm: 10.82.01 → 10.89.1
2020-03-02 19:26:25 +01:00
scalavision
dbb4826457
truvari:1.3.2->1.3.4
2020-03-02 09:15:58 +01:00
Jan Tojnar
9555834399
netpbm: split into multiple outputs
2020-03-01 15:13:03 +01:00
Frederik Rietdijk
21b808cd76
Merge staging-next into staging
2020-02-29 15:29:45 +01:00
Benjamin Hipple
ad30a30488
rustPlatform.fetchCargo: handle custom Cargo.lock patchfiles with validation
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Previously, we would asssert that the lockfiles are consistent during the
unpackPhase, but if the pkg has a patch for the lockfile itself then we must
wait until the patchPhase is complete to check.
This also removes an implicity dependency on the src attribute coming from
`fetchzip` / `fetchFromGitHub`, which happens to name the source directory
"source". Now we glob for it, so different fetchers will work consistently.
2020-02-28 18:54:23 -08:00
Matthieu Coudron
05b6836816
torchPackages, torch-repl: remove
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See https://github.com/NixOS/nixpkgs/issues/71888
and https://github.com/NixOS/nixpkgs/issues/56398
To sump up, development has moved on to other technologies than lua:
https://github.com/torch/torch7#development-status
and the current packages are broken anyway.
2020-02-28 20:56:42 +01:00
Austin Seipp
7e66ce29bf
mcy: init at 2020.02.05
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Signed-off-by: Austin Seipp <aseipp@pobox.com>
2020-02-27 21:52:15 -06:00
Austin Seipp
3d8efecda1
symbiyosys: fix calls to external programs
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48085826f
2020-02-27 21:52:15 -06:00
Mario Rodas
79f057e2eb
lean: 3.5.1 -> 3.6.0
2020-02-26 18:00:00 -05:00
Dmitry Kalinkin
b9ee6cd85c
Merge pull request #80640 from smaret/gildas-20200201a
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gildas: 20200101_a -> 20200201_a
2020-02-25 10:26:18 -05:00
R. RyanTM
56d58ecb24
quantum-espresso: 6.4.1 -> 6.5
2020-02-24 19:40:14 +00:00
R. RyanTM
4080e7976e
gtkwave: 3.3.103 -> 3.3.104
2020-02-24 11:43:54 -06:00
Linus Heckemann
0cc83f884a
Merge pull request #80292 from bcdarwin/mrtrix
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mrtrix: init at 3.0_RC3_latest
2020-02-24 13:52:38 +01:00
Timo Kaufmann
f4dbf4402b
Merge pull request #80759 from Thra11/fix-r
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Fix R
2020-02-23 23:48:21 +00:00
Tom Hall
ae9e09a2e1
R: fix build on aarch64 by removing a failing test
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I believe this test is currently incorrect on aarch64 and expects a
warning about loss of precision with much smaller numbers than the
platform's long doubles can handle.
2020-02-22 13:17:40 +00:00
Edward Tjörnhammar
9b6faedb18
shogun: 6.0.0 -> 6.1.4
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Also migrate to opencv3 to address #72739 , the PR didn't build for me.
Disable testing and ccache since they were broken.
Co-authored-by: Robert Scott <code@humanleg.org.uk>
2020-02-21 11:05:09 +01:00
Sébastien Maret
7667207f3d
gildas: 20200101_a -> 20200201_a
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- Upgrade gildas to the latest version
- Remove a patch that has been included upstream
- Re-enable parallel building (fixed upstream)
2020-02-20 15:28:57 +01:00
Gabriel Ebner
f098b0dd2c
Merge pull request #80576 from bhipple/u/rust-cargo-elan
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elan: upgrade cargo fetcher and cargoSha256
2020-02-20 09:53:49 +01:00
Maximilian Bosch
7bdc103ac8
geogebra: 5-0-570-0 -> 5-0-573-0
2020-02-20 03:09:06 +01:00
Benjamin Hipple
ed85c9981a
elan: upgrade cargo fetcher and cargoSha256
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Infra upgrade as part of #79975 ; ran `nixpkgs-review wip` successfully.
2020-02-19 18:17:27 -05:00
Tom Hall
4e5aeca90b
R: Enable java support on all platforms
2020-02-19 22:57:41 +00:00
Ben Darwin
9a2cd20478
mrtrix: init at 3.0_RC3_latest
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This package consists mostly of command-line tools, but there are also two qt5-based image viewers (`mrview` and `shview`). I have provided an option `withGui = true` to allow users to disable these viewers. They work on NixOS but unlikely to work out-of-the box on non-NixOS Linux (see #62169 ), but I've refrained from asserting that they shouldn't be built since a user might want to fiddle with runtime GL stuff.
Some programs rely on FSL and/or ANTs backends; I have somewhat heavy-handedly wrapped all binaries to point to ANTs, while FSL is not available in Nix at the moment and has a non-commercial license so would be convenient to disable by default for Hydra builds.
2020-02-16 22:25:25 -05:00
Daniel Schaefer
1e613230d2
Merge pull request #80122 from r-ryantm/auto-update/kallisto
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kallisto: 0.46.1 -> 0.46.2
2020-02-15 22:41:15 +01:00
R. RyanTM
4c6c40d96a
kallisto: 0.46.1 -> 0.46.2
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Co-authored-by: Daniel Schaefer <git@danielschaefer.me>
2020-02-15 22:39:58 +01:00
Junyoung Clare Jang
b71c03e483
lean: 3.4.2 -> 3.5.1
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3.4.2 is not compilable with GCC >= 9.1
2020-02-15 02:29:12 -05:00
R. RyanTM
d54a58a2cd
verilator: 4.026 -> 4.028
2020-02-14 12:13:04 -06:00
Benjamin Hipple
eb11feaa0b
treewide: change fetchCargoTarball default to opt-out
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Changes the default fetcher in the Rust Platform to be the newer
`fetchCargoTarball`, and changes every application using the current default to
instead opt out.
This commit does not change any hashes or cause any rebuilds. Once integrated,
we will start deleting the opt-outs and recomputing hashes.
See #79975 for details.
2020-02-13 22:41:37 -08:00
Dmitry Kalinkin
5f2a3bef33
Merge pull request #79778 from jbedo/delly
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delly: 0.8.1 -> 0.8.2
2020-02-11 03:54:02 -05:00
Justin Bedo
a8fe9e7aff
delly: 0.8.1 -> 0.8.2
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Backported patch required for htslib 1.10.2
2020-02-11 19:21:59 +11:00
Ryan Mulligan
b99e12f4fe
Merge pull request #79534 from r-ryantm/auto-update/last
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last: 1045 -> 1047
2020-02-10 18:10:08 -08:00
Brenton Horne
567be48707
marvin: 20.3.0 -> 20.4.0
2020-02-10 19:55:13 +01:00
Evils
d3a9e634bf
kicad-unstable: update update.sh && update
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use /tmp instead of XDG_RUNTIME_DIR
which is /run/user/1000, which defaults to 10% of RAM
and kicad-packages3d needs ~6gb
2020-02-10 19:54:38 +01:00
Evils
a9942b0226
kicad: simplify component names
2020-02-10 19:54:38 +01:00
Ben Darwin
39f0e3b32b
minc_tools: enable building conversion tools
2020-02-10 19:53:25 +01:00
Ben Darwin
bcad453bcf
minc_tools: 2017-09-11 -> unstable-2019-12-04
2020-02-10 19:53:25 +01:00
luc65r
94c60990fc
cemu: init at 1.3
2020-02-10 19:26:25 +01:00
R. RyanTM
e988c072be
clp: 1.17.3 -> 1.17.5
2020-02-10 13:24:22 +01:00
R. RyanTM
1d4fd7f5f2
verifast: 18.02 -> 19.12
2020-02-09 14:29:31 -06:00
R. RyanTM
3a1098e3e2
pcb: 4.2.1 -> 4.2.2
2020-02-09 16:49:13 +01:00
Frederik Rietdijk
3846896084
Merge pull request #79293 from NixOS/staging-next
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Staging next (with glibc 2.30)
2020-02-09 16:40:16 +01:00
Ryan Mulligan
c9cf351871
Merge pull request #79479 from r-ryantm/auto-update/workcraft
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workcraft: 3.1.9 -> 3.2.5
2020-02-09 06:37:47 -08:00
Frederik Rietdijk
531a48ebdb
Merge master into staging-next
2020-02-09 11:00:29 +01:00
Jannik Vierling
6ea5cd21ab
iprover: 2018_Jul_24_11h -> 3.1
2020-02-09 09:38:57 +01:00
Frederik Rietdijk
03755ed59a
Merge master into staging-next
2020-02-09 09:17:51 +01:00
Luz
0522b3347e
librepcb: 0.1.2 -> 0.1.3 ( #74786 )
2020-02-09 01:07:31 -05:00
Dmitry Kalinkin
1872e69450
Merge pull request #79301 from Abdillah/patch-2
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librepcb: Fix platform plugin xcb not found
2020-02-09 00:28:49 -05:00
Emily
a14a32fd75
symbiyosys: 2019.10.11 -> 2020.02.08
2020-02-08 23:00:07 -06:00
Ryan Mulligan
537f07555f
Merge pull request #79557 from r-ryantm/auto-update/marvin
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marvin: 19.27.0 -> 20.3.0
2020-02-08 12:42:18 -08:00
R. RyanTM
20f22f681f
marvin: 19.27.0 -> 20.3.0
2020-02-08 19:34:35 +00:00
markuskowa
8261fc4980
Merge pull request #79511 from r-ryantm/auto-update/gmsh
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gmsh: 4.5.1 -> 4.5.2
2020-02-08 14:21:27 +01:00
R. RyanTM
dae266aa66
last: 1045 -> 1047
2020-02-08 13:04:53 +00:00
R. RyanTM
7c58b6437b
gmsh: 4.5.1 -> 4.5.2
2020-02-08 07:25:27 +00:00
Ryan Mulligan
555ca166ec
Merge pull request #79467 from r-ryantm/auto-update/picard-tools
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picard-tools: 2.21.6 -> 2.21.8
2020-02-07 18:10:16 -08:00
R. RyanTM
5bf0de57ad
workcraft: 3.1.9 -> 3.2.5
2020-02-07 21:09:41 +00:00
Frederik Rietdijk
30f0909e3a
Merge master into staging-next
2020-02-07 19:27:52 +01:00
R. RyanTM
d5404eebe9
picard-tools: 2.21.6 -> 2.21.8
2020-02-07 17:20:58 +00:00
R. RyanTM
78d6e74427
eagle: 9.5.1 -> 9.5.2
2020-02-06 20:17:53 +01:00
R. RyanTM
ce5b0406db
labelImg: 1.6.0 -> 1.8.1
2020-02-06 20:11:53 +01:00
Hernawan Faïz Abdillah
2d4ee40176
librepcb: Fix platform plugin xcb not found
2020-02-06 08:44:16 +07:00
Frederik Rietdijk
292fd97f67
Merge staging-next into staging
2020-02-05 20:48:28 +01:00
Frederik Rietdijk
419bc0a4cd
Revert "Revert "Merge master into staging-next""
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In 87a19e9048ac241fb7a50be87c79790be87c7979
2020-02-05 19:41:25 +01:00
Frederik Rietdijk
0be87c7979
Revert "Merge master into staging-next"
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I merged master into staging-next but accidentally pushed it to master.
This should get us back to 87a19e9048ac241fb7a576a439239e
2020-02-05 19:18:35 +01:00
Ryan Mulligan
67143ec938
Merge pull request #79231 from r-ryantm/auto-update/SPAdes
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SPAdes: 3.13.1 -> 3.14.0
2020-02-05 06:54:45 -08:00
Vladimír Čunát
48a997cd76
Merge #66528 : glibc: 2.27 -> 2.30 (into staging)
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Includes update of stdenv bootstap tools (for three main platforms)
and many package fixes with new glibc.
2020-02-05 13:41:09 +01:00
R. RyanTM
3c54ae5679
SPAdes: 3.13.1 -> 3.14.0
2020-02-04 16:40:50 +00:00
Millian Poquet
150f4a967c
simgrid: 3.24 -> 3.25
2020-02-03 10:37:03 -08:00
Maximilian Bosch
ea8ae88f04
Merge branch 'staging' into glibc230
2020-02-01 17:42:03 +01:00
Florian Klink
570afbcb5b
abc-verifier: passthru rev
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Some consumers of abc-verifier require certain abc versions.
For that reason, expose the exact rev via a passtrhru.
2020-02-01 12:49:45 +01:00
Florian Klink
351f47da57
abc-verifier: 2018-07-08 -> 2020-01-11
2020-02-01 12:49:45 +01:00
markuskowa
d9209250e5
Merge pull request #78981 from r-ryantm/auto-update/jmol
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jmol: 14.30.1 -> 14.30.2
2020-02-01 11:07:38 +01:00
Mario Rodas
c8af1bef6e
Merge pull request #78833 from r-ryantm/auto-update/snakemake
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snakemake: 5.8.1 -> 5.9.1
2020-02-01 04:11:11 -05:00
Mario Rodas
611971f9a5
Merge pull request #78849 from r-ryantm/auto-update/tetgen
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tetgen: 1.5.0 -> 1.5.1
2020-02-01 04:10:16 -05:00
R. RyanTM
097737b5a4
jmol: 14.30.1 -> 14.30.2
2020-02-01 03:50:56 +00:00
Vincent Laporte
13dd5844fd
coqPackages_8_11.coq: 8.11+β1 → 8.11.0
2020-01-31 14:09:51 +01:00
Vincent Laporte
659a7ae963
coq: disable CoqIDE on Darwin for Coq ≥ 8.10
2020-01-31 14:09:51 +01:00
Luka Blaskovic
fd614a8e8f
saw-tools: use default llvm
2020-01-30 18:35:30 -05:00
Jörg Thalheim
6eb23e0721
verilator: 4.024 -> 4.026 ( #78891 )
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verilator: 4.024 -> 4.026
2020-01-30 20:43:40 +00:00
Jörg Thalheim
37286820f2
verilator: shebangs patch is not needed anymore
2020-01-30 20:42:51 +00:00
R. RyanTM
ab63f72b23
sherpa: 2.2.6 -> 2.2.8 ( #78852 )
2020-01-30 13:08:47 -05:00
R. RyanTM
cd526d844b
verilator: 4.024 -> 4.026
2020-01-30 18:06:40 +00:00
Ryan Mulligan
c179ec8a64
Merge pull request #78823 from r-ryantm/auto-update/seaview
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seaview: 4.7 -> 5.0
2020-01-30 06:59:41 -08:00
Maximilian Bosch
abefd4f78a
pspp: 1.0.1 -> 1.2.0, fix build w/glibc-2.30
2020-01-30 15:19:44 +01:00
R. RyanTM
53706054ba
tetgen: 1.5.0 -> 1.5.1
2020-01-30 12:47:50 +00:00
R. RyanTM
a94c66bc88
snakemake: 5.8.1 -> 5.9.1
2020-01-30 09:44:26 +00:00
R. RyanTM
42fff82421
seaview: 4.7 -> 5.0
2020-01-30 08:26:52 +00:00
Mario Rodas
a20b7cff7c
Merge pull request #78521 from r-ryantm/auto-update/ott
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ott: 0.29 -> 0.30
2020-01-29 21:47:20 -05:00
Frederik Rietdijk
dce0ca29d9
Merge master into staging-next
2020-01-28 10:46:13 +01:00
Silvan Mosberger
80a2740991
Merge pull request #78265 from Synthetica9/https-homepages
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treewide: fix redirected urls
2020-01-27 15:00:53 +01:00
Gabriel Ebner
3809627321
Merge pull request #78511 from r-ryantm/auto-update/libqalculate
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libqalculate: 3.6.0 -> 3.7.0
2020-01-26 18:47:18 +01:00
Gabriel Ebner
8161fe21e0
qalculate-gtk: 3.6.0 -> 3.7.0
2020-01-26 18:43:29 +01:00
R. RyanTM
f1085d02bb
ott: 0.29 -> 0.30
2020-01-26 09:43:23 +00:00
samlich
3376628557
pymol: cleanup
2020-01-25 19:58:36 +00:00
samlich
77317774ce
pymol: link desktop icon
2020-01-24 19:51:08 +00:00
samlich
3638755ff3
pymol: add samlich as maintainer
2020-01-24 19:49:38 +00:00
samlich
97410b59f3
pymol: 2.1.0 -> 2.3.0
2020-01-24 19:42:59 +00:00
Justin Bedo
7f142260d3
manta: init 1.6.0
2020-01-24 02:02:19 -08:00
Ryan Mulligan
a6dc361cae
Merge pull request #78261 from r-ryantm/auto-update/picard-tools
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picard-tools: 2.21.3 -> 2.21.6
2020-01-22 16:18:57 -08:00
Patrick Hilhorst
593e11fd94
treewide: fix redirected urls
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According to https://repology.org/repository/nix_unstable/problems , we have a
lot of packages that have http links that redirect to https as their homepage.
This commit updates all these packages to use the https links as their
homepage.
The following script was used to make these updates:
```
curl https://repology.org/api/v1/repository/nix_unstable/problems \
| jq '.[] | .problem' -r \
| rg 'Homepage link "(.+)" is a permanent redirect to "(.+)" and should be updated' --replace 's@$1@$2@' \
| sort | uniq > script.sed
find -name '*.nix' | xargs -P4 -- sed -f script.sed -i
```
2020-01-22 11:26:22 +01:00
R. RyanTM
fff7a7a862
picard-tools: 2.21.3 -> 2.21.6
2020-01-22 10:12:28 +00:00
DwarfMaster
227a3f4383
Renamed maintainer lucas8 -> dwarfmaster
2020-01-21 16:39:52 +10:00
Jonathan Ringer
4de137a77d
samtools: 1.9 -> 1.10
2020-01-19 13:13:01 -08:00
Frederik Rietdijk
bcd8c6b8dc
Merge master into staging-next
2020-01-17 17:08:16 +01:00
Dmitry Kalinkin
430dfb8082
Merge pull request #77631 from smaret/gildas-202001a
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gildas: 20191201_a -> 20200101_a
2020-01-17 10:23:28 -05:00
Anders Kaseorg
3cd8ce3bce
treewide: Fix unsafe concatenation of $LD_LIBRARY_PATH
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Naive concatenation of $LD_LIBRARY_PATH can result in an empty
colon-delimited segment; this tells glibc to load libraries from the
current directory, which is definitely wrong, and may be a security
vulnerability if the current directory is untrusted. (See #67234 , for
example.) Fix this throughout the tree.
Signed-off-by: Anders Kaseorg <andersk@mit.edu>
2020-01-15 09:47:03 +01:00
Frederik Rietdijk
2a88c3c302
Merge staging-next into staging
2020-01-15 09:23:28 +01:00
Will Dietz
afe905246d
nota: init at 1.0
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Fixes #77590 .
2020-01-14 15:16:21 -08:00
Sébastien Maret
0956fcab16
gildas: 20191201_a -> 20200101_a
2020-01-14 11:22:53 +01:00
Luka Blaskovic
991a7e041f
pcalc: build with bison3
2020-01-13 21:35:19 +00:00
lewo
4ea7d13c5c
Merge pull request #77041 from filalex77/rink-0.4.5
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rink: 0.4.4 -> 0.4.5
2020-01-11 09:35:16 +01:00
Jonathan Ringer
5961f211f3
python.pkgs wide: fix problematic urls
2020-01-10 21:02:12 -08:00
Jörg Thalheim
01d93cbbe1
kicad: split version.nix & add update.sh ( #77003 )
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kicad: split version.nix & add update.sh
2020-01-10 14:19:14 +00:00
Bruno Bzeznik
f7a4e4a93a
bayescan: init at 2.1 ( #68191 )
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Co-authored-by: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
2020-01-09 12:38:53 -05:00
markuskowa
2aecfca22c
Merge pull request #77083 from r-ryantm/auto-update/gmsh
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gmsh: 4.4.1 -> 4.5.1
2020-01-09 12:27:11 +01:00
Mario Rodas
2148e53664
Merge pull request #77160 from r-ryantm/auto-update/ngspice
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ngspice: 30 -> 31
2020-01-09 05:13:15 -05:00
