874 Commits

Author	SHA1	Message	Date
R. Ryantm	38e3d21824	stacks: 2.60 -> 2.62	2023-02-06 21:36:49 +01:00
R. Ryantm	0fd2901e31	varscan: 2.4.4 -> 2.4.5	2023-02-05 13:38:28 +00:00
R. Ryantm	eadaccaa42	igv: 2.15.5 -> 2.16.0	2023-02-04 18:01:58 +00:00
Sandro	a9cadfb7b8	Merge pull request #213490 from OPNA2608/refactor/yaml-cpp ... yaml-cpp*: Refactor, rename, adopt	2023-02-02 17:32:34 +01:00
OPNA2608	c9b4c7dccd	treewide: Rename libyamlcpp* to yaml-cpp*	2023-01-31 16:22:54 +01:00
Nick Cao	c84edce4ec	Merge pull request #213063 from r-ryantm/auto-update/diamond ... diamond: 2.0.15 -> 2.1.0	2023-01-31 16:47:56 +08:00
R. Ryantm	01c2d762f3	diamond: 2.0.15 -> 2.1.0	2023-01-28 02:58:32 +00:00
Ben Darwin	b27838807e	ants: unpin vtk dependency	2023-01-27 00:21:26 -05:00
Fabian Affolter	bf0a5df606	Merge pull request #212793 from fabaff/last-fix ... last: 1422 -> 1445	2023-01-26 20:06:44 +01:00
Fabian Affolter	e14e8f5f31	last: 1422 -> 1445	2023-01-26 16:10:25 +01:00
R. Ryantm	422b1c5144	igv: 2.15.4 -> 2.15.5	2023-01-25 17:03:16 +00:00
Justin Bedő	ed15930675	Merge pull request #211057 from r-ryantm/auto-update/last ... last: 1411 -> 1422	2023-01-23 22:22:52 +00:00
Sandro	7726aa9ce6	Merge pull request #206287 from amesgen/add-TandemAligner	2023-01-23 23:12:36 +01:00
Weijia Wang	02d3fe6418	Merge pull request #212113 from r-ryantm/auto-update/sambamba ... sambamba: 0.8.2 -> 1.0.0	2023-01-23 21:01:50 +01:00
Nick Cao	06d76bd44e	Merge pull request #210641 from r-ryantm/auto-update/star ... star: 2.7.10a -> 2.7.10b	2023-01-23 16:16:01 +08:00
Weijia Wang	90e2800173	Merge pull request #198962 from r-ryantm/auto-update/bowtie2 ... bowtie2: 2.4.5 -> 2.5.1	2023-01-23 05:32:54 +01:00
Weijia Wang	6bfeb6aa68	Merge pull request #195005 from r-ryantm/auto-update/picard-tools ... picard-tools: 2.27.4 -> 2.27.5	2023-01-22 22:40:27 +01:00
R. Ryantm	2166bf1bfe	sambamba: 0.8.2 -> 1.0.0	2023-01-22 13:54:41 +00:00
Weijia Wang	218c4c526e	Merge pull request #212002 from mothsART/feature/replace_http_by_https ... treewide: replace http by https when https is a permanent redirection	2023-01-22 03:26:02 +01:00
Ferry Jérémie	65d7e87fdb	treewide: replace http by https when https is a permanent redirection	2023-01-22 02:46:49 +01:00
R. Ryantm	2660299f54	bowtie2: 2.4.5 -> 2.5.1	2023-01-21 21:19:00 +00:00
Guillaume Girol	33afbf39f6	treewide: switch to nativeCheckInputs ... checkInputs used to be added to nativeBuildInputs. Now we have nativeCheckInputs to do that instead. Doing this treewide change allows to keep hashes identical to before the introduction of nativeCheckInputs.	2023-01-21 12:00:00 +00:00
R. Ryantm	d269d79261	last: 1411 -> 1422	2023-01-16 09:13:32 +00:00
R. Ryantm	fc65d6e66e	star: 2.7.10a -> 2.7.10b	2023-01-14 06:06:52 +00:00
github-actions[bot]	33aa224777	Merge master into staging-next	2023-01-09 18:01:24 +00:00
R. Ryantm	e0db41ab1a	ants: 2.4.2 -> 2.4.3	2023-01-09 09:48:53 -06:00
Robert Schütz	b3241be75d	python310Packages.levenshtein: don't use alias	2023-01-09 06:09:31 -08:00
R. Ryantm	605d013aac	igv: 2.15.1 -> 2.15.4	2023-01-03 14:36:54 +08:00
Ben Darwin	9c748218f2	itk: unstable -> 5.3.0	2022-12-27 09:06:37 +01:00
Sandro	b20fb264cc	Merge pull request #197575 from thyol/sratoolkit-init	2022-12-24 02:58:47 +01:00
amesgen	d499bc2447	tandem-aligner: init at unstable-2022-09-17	2022-12-15 20:48:53 +01:00
Weijia Wang	fa19b16e93	ecopcr: 0.8.0 -> 1.0.1	2022-12-08 04:35:53 +01:00
Jonas Heinrich	20193b6d86	Merge pull request #202395 from thyol/muscle ... muscle: 3.8.31 -> 5.1.0	2022-11-24 15:47:12 +01:00
Jonas Heinrich	57728b51cf	Merge pull request #202404 from thyol/veryfasttree ... veryfasttree: init at 3.1.1	2022-11-24 15:14:13 +01:00
thyol	cdcb7946ba	veryfasttree: init at 3.1.1	2022-11-22 20:45:45 +01:00
thyol	35d3a6fa79	muscle: add myself to maintainers	2022-11-22 20:19:17 +01:00
thyol	d7c8595f62	muscle: 3.8.31 -> 5.1.0	2022-11-22 20:19:17 +01:00
thyol	81d6f1c7dc	sratoolkit: init at 2.11.3	2022-11-21 20:27:28 +01:00
R. Ryantm	6ba0d20487	igv: 2.14.1 -> 2.15.1	2022-11-20 14:06:29 +08:00
R. Ryantm	c7ba9b459c	delly: 1.1.5 -> 1.1.6	2022-11-08 18:21:37 +00:00
Justin Bedő	3a90ab68e6	Merge pull request #197631 from jbedo/octopus ... octopus-caller: backport patch to fix build	2022-11-07 21:26:21 +00:00
Bruno Bzeznik	9243a44c9c	seqkit: init at 2.3.1	2022-11-04 08:51:32 +01:00
Stanisław Pitucha	9ed8ce7ff3	Merge pull request #198609 from natsukium/mmseqs2/init ... mmseqs2: init at 14-7e284	2022-11-01 21:47:20 +11:00
natsukium	ed7511ad02	mmseqs2: init at 14-7e284	2022-10-31 23:49:10 +09:00
Justin Bedo	5f5bb45093	octopus-caller: backport patch to fix build	2022-10-25 09:52:28 +11:00
OPNA2608	982a1bfd80	sambamba: fix compilation on Darwin, cleanup installPhase	2022-10-23 16:12:47 +02:00
Jan Tojnar	457f28f6f8	Merge branch 'master' into staging-next ... ; Conflicts: ; pkgs/development/tools/codespell/default.nix codespell 2.2.2 switched to pyproject & setuptools_scm: https://github.com/codespell-project/codespell/pull/2523	2022-10-19 05:24:28 +02:00
R. Ryantm	4ab06e3223	ants: 2.4.1 -> 2.4.2	2022-10-19 09:19:31 +08:00
github-actions[bot]	f52955a521	Merge master into staging-next	2022-10-16 18:01:42 +00:00
R. Ryantm	00b3b4ee24	gatk: 4.2.6.1 -> 4.3.0.0	2022-10-16 21:48:30 +08:00