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python311Packages.phik: refactor, disable failing tests

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This commit is contained in:
Fabian Affolter 2023-11-25 12:17:31 +01:00
parent 6011769ece
commit fc1c549b56
1 changed files with 45 additions and 25 deletions
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70
pkgs/development/python-modules/phik/default.nix
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@ -2,27 +2,29 @@
, buildPythonPackage , buildPythonPackage
, cmake , cmake
, fetchFromGitHub , fetchFromGitHub
, isPy3k
, pytestCheckHook
, nbconvert
, joblib , joblib
, jupyter , jupyter
, jupyter-client , jupyter-client
, numpy
, scipy
, pandas
, matplotlib , matplotlib
, nbconvert
, ninja , ninja
, numba , numba
, numpy
, pandas
, pybind11 , pybind11
, pytestCheckHook
, pythonOlder
, scikit-build , scikit-build
, scipy
, setuptools
}: }:
buildPythonPackage rec { buildPythonPackage rec {
pname = "phik"; pname = "phik";
version = "0.12.3"; version = "0.12.3";
disabled = !isPy3k; pyproject = true;
format = "pyproject";
disabled = pythonOlder "3.7";
src = fetchFromGitHub { src = fetchFromGitHub {
owner = "KaveIO"; owner = "KaveIO";
@ -31,11 +33,11 @@ buildPythonPackage rec {
hash = "sha256-9o3EDhgmne2J1QfzjjNQc1mUcyCzoVrCnWXqjWkiZU0="; hash = "sha256-9o3EDhgmne2J1QfzjjNQc1mUcyCzoVrCnWXqjWkiZU0=";
}; };
nativeCheckInputs = [ nativeBuildInputs = [
pytestCheckHook cmake
nbconvert ninja
jupyter scikit-build
jupyter-client setuptools
]; ];
propagatedBuildInputs = [ propagatedBuildInputs = [
@ -48,16 +50,19 @@ buildPythonPackage rec {
pybind11 pybind11
]; ];
# uses setuptools to drive build process nativeCheckInputs = [
dontUseCmakeConfigure = true; pytestCheckHook
nbconvert
nativeBuildInputs = [ jupyter
cmake jupyter-client
ninja
scikit-build
]; ];
pythonImportsCheck = [ "phik" ]; # Uses setuptools to drive build process
dontUseCmakeConfigure = true;
pythonImportsCheck = [
"phik"
];
postInstall = '' postInstall = ''
rm -r $out/bin rm -r $out/bin
@ -68,12 +73,27 @@ buildPythonPackage rec {
rm -r phik rm -r phik
''; '';
disabledTests = [
# TypeError: 'numpy.float64' object cannot be interpreted as an integer
# https://github.com/KaveIO/PhiK/issues/73
"test_significance_matrix_hybrid"
"test_significance_matrix_mc"
];
disabledTestPaths = [
# Don't test integrations
"tests/phik_python/integration/"
];
meta = with lib; { meta = with lib; {
description = "Phi_K correlation analyzer library"; description = "Phi_K correlation analyzer library";
longDescription = "Phi_K is a new and practical correlation coefficient based on several refinements to Pearson’s hypothesis test of independence of two variables."; longDescription = ''
homepage = "https://phik.readthedocs.io/en/latest/"; Phi_K is a new and practical correlation coefficient based on several refinements to
changelog = "https://github.com/KaveIO/PhiK/blob/${src.rev}/CHANGES.rst"; Pearson’s hypothesis test of independence of two variables.
maintainers = with maintainers; [ melsigl ]; '';
homepage = "https://phik.readthedocs.io/";
changelog = "https://github.com/KaveIO/PhiK/blob/${version}/CHANGES.rst";
license = licenses.asl20; license = licenses.asl20;
maintainers = with maintainers; [ melsigl ];
}; };
} }