diff --git a/pkgs/applications/science/biology/conglomerate/default.nix b/pkgs/applications/science/biology/conglomerate/default.nix new file mode 100644 index 000000000000..c04bc84c156d --- /dev/null +++ b/pkgs/applications/science/biology/conglomerate/default.nix @@ -0,0 +1,34 @@ +{ stdenv, fetchFromGitHub, cmake, coreutils, perl, bicpl, libminc, zlib, minc_tools, + makeWrapper, GetoptTabular, MNI-Perllib }: + +stdenv.mkDerivation rec { + pname = "conglomerate"; + name = "${pname}-2017-09-10"; + + src = fetchFromGitHub { + owner = "BIC-MNI"; + repo = pname; + rev = "7343238bc6215942c7ecc885a224f24433a291b0"; + sha256 = "1mlqgmy3jc13bv7d01rjwldxq0p4ayqic85xcl222hhifi3w2prr"; + }; + + nativeBuildInputs = [ cmake makeWrapper ]; + buildInputs = [ libminc zlib bicpl ]; + propagatedBuildInputs = [ coreutils minc_tools perl GetoptTabular MNI-Perllib ]; + + cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/" "-DBICPL_DIR=${bicpl}/lib/" ]; + + postFixup = '' + for p in $out/bin/*; do + wrapProgram $p --prefix PERL5LIB : $PERL5LIB --set PATH "${stdenv.lib.makeBinPath [ coreutils minc_tools ]}"; + done + ''; + + meta = with stdenv.lib; { + homepage = https://github.com/BIC-MNI/conglomerate; + description = "More command-line utilities for working with MINC files"; + maintainers = with maintainers; [ bcdarwin ]; + platforms = platforms.unix; + license = licenses.free; + }; +} diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix index 10053f926da1..d98e2aec1d2c 100644 --- a/pkgs/top-level/all-packages.nix +++ b/pkgs/top-level/all-packages.nix @@ -19740,6 +19740,10 @@ with pkgs; bcftools = callPackage ../applications/science/biology/bcftools { }; + conglomerate = callPackage ../applications/science/biology/conglomerate { + inherit (perlPackages) GetoptTabular MNI-Perllib; + }; + dcm2niix = callPackage ../applications/science/biology/dcm2niix { }; diamond = callPackage ../applications/science/biology/diamond { };