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python3Packages.nipype: avoid use of neurdflib by default since it causes a package collision when rdflib is in the closure

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This commit is contained in:
Ben Darwin 2020-10-07 14:02:26 -04:00
parent 921b15efe7
commit f31be2ec25
1 changed files with 6 additions and 2 deletions
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8
pkgs/development/python-modules/nipype/default.nix
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@ -21,6 +21,7 @@
, pytest
, pytest_xdist
, pytest-forked
, rdflib
, scipy
, simplejson
, traits
@ -33,6 +34,10 @@
, bash
, glibcLocales
, callPackage
# causes Python packaging conflict with any package requiring rdflib,
# so use the unpatched rdflib by default (disables Nipype provenance tracking);
# see https://github.com/nipy/nipype/issues/2888:
, useNeurdflib ? false
}:
let
@ -69,7 +74,6 @@ buildPythonPackage rec {
funcsigs
future
networkx
neurdflib
nibabel
numpy
packaging
@ -80,7 +84,7 @@ buildPythonPackage rec {
simplejson
traits
xvfbwrapper
];
] ++ [ (if useNeurdflib then neurdflib else rdflib) ];
checkInputs = [
pybids