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Merge pull request #34199 from arcadio/kallisto

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kallisto: init at 0.43.1
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Samuel Leathers 2018-01-24 20:43:24 -07:00 committed by GitHub
commit efdb0983da
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3 changed files with 28 additions and 0 deletions
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1
lib/maintainers.nix
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@ -55,6 +55,7 @@
antonxy = "Anton Schirg <anton.schirg@posteo.de>";
apeschar = "Albert Peschar <albert@peschar.net>";
apeyroux = "Alexandre Peyroux <alex@px.io>";
arcadio = "Arcadio Rubio García <arc@well.ox.ac.uk>";
ardumont = "Antoine R. Dumont <eniotna.t@gmail.com>";
aristid = "Aristid Breitkreuz <aristidb@gmail.com>";
arobyn = "Alexei Robyn <shados@shados.net>";

25
pkgs/applications/science/biology/kallisto/default.nix Normal file
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@ -0,0 +1,25 @@
{ stdenv, fetchFromGitHub, cmake, hdf5, zlib }:
stdenv.mkDerivation rec {
name = "kallisto-${version}";
version = "0.43.1";
src = fetchFromGitHub {
repo = "kallisto";
owner = "pachterlab";
rev = "v${version}";
sha256 = "04697pf7jvy7vw126s1rn09q4iab9223jvb1nb0jn7ilwkq7pgwz";
};
nativeBuildInputs = [ cmake ];
buildInputs = [ hdf5 zlib ];
meta = with stdenv.lib; {
description = "kallisto is a program for quantifying abundances of transcripts from RNA-Seq data";
homepage = https://pachterlab.github.io/kallisto;
license = licenses.bsd2;
platforms = platforms.linux;
maintainers = [ maintainers.arcadio ];
};
}

2
pkgs/top-level/all-packages.nix
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@ -18945,6 +18945,8 @@ with pkgs;
neuron-version = neuron.version;
};
kallisto = callPackage ../applications/science/biology/kallisto { };
neuron = callPackage ../applications/science/biology/neuron {
python = null;
};