Merge pull request #314101 from sikmir/mapclassify

python3Packages.mapclassify: init at 2.6.1

pkgs/development/python-modules/geodatasets/default.nix

@@ -0,0 +1,54 @@
+{
+  lib,
+  buildPythonPackage,
+  fetchFromGitHub,
+  pytestCheckHook,
+  pythonOlder,
+
+  geopandas,
+  pooch,
+  pyogrio,
+  setuptools-scm,
+}:
+
+buildPythonPackage rec {
+  pname = "geodatasets";
+  version = "2023.12.0";
+  pyproject = true;
+  disabled = pythonOlder "3.8";
+
+  src = fetchFromGitHub {
+    owner = "geopandas";
+    repo = "geodatasets";
+    rev = version;
+    hash = "sha256-yecAky3lCKcSgW4kkYTBNnyKyIWnGSBL600wVgGN8CE=";
+  };
+
+  build-system = [ setuptools-scm ];
+
+  propagatedBuildInputs = [ pooch ];
+
+  nativeCheckInputs = [
+    geopandas
+    pyogrio
+    pytestCheckHook
+  ];
+
+  preCheck = ''
+    export HOME=$TMPDIR
+  '';
+
+  pytestFlagsArray = [
+    # disable tests which require network access
+    "-m 'not request'"
+  ];
+
+  pythonImportsCheck = [ "geodatasets" ];
+
+  meta = {
+    description = "Spatial data examples";
+    homepage = "https://geodatasets.readthedocs.io/";
+    license = lib.licenses.bsd3;
+    maintainers = lib.teams.geospatial.members;
+  };
+}

pkgs/development/python-modules/libpysal/default.nix

@@ -0,0 +1,86 @@
+{
+  lib,
+  buildPythonPackage,
+  fetchFromGitHub,
+  pytestCheckHook,
+  pythonOlder,
+
+  beautifulsoup4,
+  fiona,
+  geodatasets,
+  geopandas,
+  numpy,
+  packaging,
+  pandas,
+  platformdirs,
+  requests,
+  scikit-learn,
+  scipy,
+  setuptools-scm,
+  shapely,
+}:
+
+buildPythonPackage rec {
+  pname = "libpysal";
+  version = "4.10";
+  pyproject = true;
+  disabled = pythonOlder "3.10";
+
+  src = fetchFromGitHub {
+    owner = "pysal";
+    repo = "libpysal";
+    rev = "v${version}";
+    hash = "sha256-jzSkIFSIXc039KR4fS1HOI/Rj0mHwbArn2hD+zfAZDg=";
+  };
+
+  build-system = [ setuptools-scm ];
+
+  propagatedBuildInputs = [
+    beautifulsoup4
+    fiona
+    geopandas
+    numpy
+    packaging
+    pandas
+    platformdirs
+    requests
+    scikit-learn
+    scipy
+    shapely
+  ];
+
+  nativeCheckInputs = [
+    geodatasets
+    pytestCheckHook
+  ];
+
+  preCheck = ''
+    export HOME=$TMPDIR
+  '';
+
+  # requires network access
+  disabledTestPaths = [
+    "libpysal/cg/tests/test_geoJSON.py"
+    "libpysal/examples/tests/test_available.py"
+    "libpysal/graph/tests/test_base.py"
+    "libpysal/graph/tests/test_builders.py"
+    "libpysal/graph/tests/test_contiguity.py"
+    "libpysal/graph/tests/test_kernel.py"
+    "libpysal/graph/tests/test_matching.py"
+    "libpysal/graph/tests/test_plotting.py"
+    "libpysal/graph/tests/test_triangulation.py"
+    "libpysal/graph/tests/test_utils.py"
+    "libpysal/graph/tests/test_set_ops.py"
+    "libpysal/weights/tests/test_contiguity.py"
+    "libpysal/weights/tests/test_util.py"
+  ];
+
+  pythonImportsCheck = [ "libpysal" ];
+
+  meta = {
+    description = "A library of spatial analysis functions";
+    homepage = "https://pysal.org/libpysal/";
+    license = lib.licenses.bsd3;
+    maintainers = lib.teams.geospatial.members;
+  };
+}

pkgs/development/python-modules/mapclassify/default.nix

@@ -0,0 +1,58 @@
+{
+  lib,
+  buildPythonPackage,
+  fetchFromGitHub,
+  pytestCheckHook,
+  pythonOlder,
+
+  geopandas,
+  libpysal,
+  networkx,
+  numpy,
+  pandas,
+  scikit-learn,
+  scipy,
+  setuptools-scm,
+}:
+
+buildPythonPackage rec {
+  pname = "mapclassify";
+  version = "2.6.1";
+  pyproject = true;
+  disabled = pythonOlder "3.9";
+
+  src = fetchFromGitHub {
+    owner = "pysal";
+    repo = "mapclassify";
+    rev = "v${version}";
+    hash = "sha256-lb2Ui6zdx6MQBtBrL/Xj9k7cm6De8aLEuBLZDhPPDnE=";
+  };
+
+  build-system = [ setuptools-scm ];
+
+  propagatedBuildInputs = [
+    networkx
+    numpy
+    pandas
+    scikit-learn
+    scipy
+  ];
+
+  nativeCheckInputs = [
+    pytestCheckHook
+    geopandas
+    libpysal
+  ];
+
+  # requires network access
+  disabledTestPaths = [ "mapclassify/tests/test_greedy.py" ];
+
+  pythonImportsCheck = [ "mapclassify" ];
+
+  meta = {
+    description = "Classification Schemes for Choropleth Maps";
+    homepage = "https://pysal.org/mapclassify/";
+    license = lib.licenses.bsd3;
+    maintainers = lib.teams.geospatial.members;
+  };
+}

pkgs/development/python-modules/pyogrio/default.nix

@@ -0,0 +1,75 @@
+{
+  lib,
+  buildPythonPackage,
+  fetchFromGitHub,
+  pytestCheckHook,
+  pythonOlder,
+
+  certifi,
+  cython,
+  gdal,
+  numpy,
+  packaging,
+  setuptools,
+  versioneer,
+  wheel,
+}:
+
+buildPythonPackage rec {
+  pname = "pyogrio";
+  version = "0.8.0";
+  pyproject = true;
+  disabled = pythonOlder "3.8";
+
+  src = fetchFromGitHub {
+    owner = "geopandas";
+    repo = "pyogrio";
+    rev = "v${version}";
+    hash = "sha256-h4Rv5xOWSJSv0nLbosviz5EiF/IsZO5wzBel9YRd0Bg=";
+  };
+
+  postPatch = ''
+    substituteInPlace pyproject.toml \
+      --replace-fail "versioneer[toml]==0.28" "versioneer[toml]"
+  '' + lib.optionalString (!pythonOlder "3.12") ''
+    substituteInPlace setup.py \
+      --replace-fail "distutils" "setuptools._distutils"
+  '';
+
+  nativeBuildInputs = [
+    cython
+    gdal # for gdal-config
+    setuptools
+    versioneer
+    wheel
+  ] ++ versioneer.optional-dependencies.toml;
+
+  buildInputs = [ gdal ];
+
+  propagatedBuildInputs = [
+    certifi
+    numpy
+    packaging
+  ];
+
+  nativeCheckInputs = [ pytestCheckHook ];
+
+  preCheck = ''
+    python setup.py build_ext --inplace
+  '';
+
+  pytestFlagsArray = [
+    # disable tests which require network access
+    "-m 'not network'"
+  ];
+
+  pythonImportsCheck = [ "pyogrio" ];
+
+  meta = {
+    description = "Vectorized spatial vector file format I/O using GDAL/OGR";
+    homepage = "https://pyogrio.readthedocs.io/";
+    changelog = "https://github.com/geopandas/pyogrio/blob/${src.rev}/CHANGES.md";
+    license = lib.licenses.mit;
+    maintainers = lib.teams.geospatial.members;
+  };
+}

pkgs/top-level/python-packages.nix

@@ -4711,6 +4711,8 @@ self: super: with self; {
 
   geocoder = callPackage ../development/python-modules/geocoder { };
 
+  geodatasets = callPackage ../development/python-modules/geodatasets { };
+
   geographiclib = callPackage ../development/python-modules/geographiclib { };
 
   geoip2 = callPackage ../development/python-modules/geoip2 { };
@@ -6690,6 +6692,8 @@ self: super: with self; {
 
   libpyfoscam = callPackage ../development/python-modules/libpyfoscam { };
 
+  libpysal = callPackage ../development/python-modules/libpysal { };
+
   libpyvivotek = callPackage ../development/python-modules/libpyvivotek { };
 
   libpwquality = lib.pipe pkgs.libpwquality [
@@ -7170,6 +7174,8 @@ self: super: with self; {
 
   mapbox-earcut = callPackage ../development/python-modules/mapbox-earcut { };
 
+  mapclassify = callPackage ../development/python-modules/mapclassify { };
+
   mariadb = callPackage ../development/python-modules/mariadb { };
 
   marimo = callPackage ../development/python-modules/marimo { };
@@ -9996,6 +10002,8 @@ self: super: with self; {
 
   pynx584 = callPackage ../development/python-modules/pynx584 { };
 
+  pyogrio = callPackage ../development/python-modules/pyogrio { };
+
   pyorthanc = callPackage ../development/python-modules/pyorthanc { };
 
   pyoutbreaksnearme = callPackage ../development/python-modules/pyoutbreaksnearme { };