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ezminc: init at 2017-08-29

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This commit is contained in:
Ben Darwin 2017-09-26 18:08:14 -04:00
parent c9db4cabc8
commit de2f36982b
2 changed files with 34 additions and 0 deletions
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32
pkgs/applications/science/biology/EZminc/default.nix Normal file
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@ -0,0 +1,32 @@
{ stdenv, fetchFromGitHub, cmake, libminc, bicpl, itk, fftwFloat, gsl }:
stdenv.mkDerivation rec { pname = "EZminc";
name = "${pname}-2017-08-29";
src = fetchFromGitHub {
owner = "BIC-MNI";
repo = pname;
rev = "4e017236cb6e7f6e07507446b18b759c584b6fc3";
sha256 = "1pg06x42pgsg7zy7dz9wf6ajakkm2n8by64lg9z64qi8qqy82b8v";
};
nativeBuildInputs = [ cmake ];
buildInputs = [ itk libminc bicpl fftwFloat gsl ];
cmakeFlags = [ "-DLIBMINC_DIR=${libminc}/lib/"
"-DEZMINC_BUILD_TOOLS=TRUE"
"-DEZMINC_BUILD_MRFSEG=TRUE"
"-DEZMINC_BUILD_DD=TRUE" ];
checkPhase = "ctest --output-on-failure ../tests/"; # but ctest doesn't find the tests ...
enableParallelBuilding = true;
meta = with stdenv.lib; {
homepage = "https://github.com/BIC-MNI/${pname}";
description = "Collection of Perl and shell scripts for processing MINC files";
maintainers = with maintainers; [ bcdarwin ];
platforms = platforms.unix;
license = licenses.free;
};
}

2
pkgs/top-level/all-packages.nix
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@ -19739,6 +19739,8 @@ with pkgs;
emboss = callPackage ../applications/science/biology/emboss { };
ezminc = callPackage ../applications/science/biology/EZminc { };
htslib = callPackage ../development/libraries/science/biology/htslib { };
igv = callPackage ../applications/science/biology/igv { };