From de1618552c9956bf2c5915d94c584a017e3c4a3d Mon Sep 17 00:00:00 2001
From: Tom Hubrecht <tom@hubrecht.ovh>
Date: Mon, 6 May 2024 14:13:20 +0200
Subject: [PATCH] sage: Add as passthru.tests to critical dependencies

---
 pkgs/applications/science/math/lrcalc/default.nix            | 5 +++++
 pkgs/development/python-modules/cypari2/default.nix          | 5 +++++
 pkgs/development/python-modules/cysignals/default.nix        | 5 +++++
 pkgs/development/python-modules/cython/default.nix           | 5 +++++
 pkgs/development/python-modules/fpylll/default.nix           | 5 +++++
 pkgs/development/python-modules/gmpy2/default.nix            | 5 +++++
 .../python-modules/importlib-metadata/default.nix            | 5 +++++
 .../python-modules/importlib-resources/default.nix           | 5 +++++
 pkgs/development/python-modules/ipykernel/default.nix        | 4 ++++
 pkgs/development/python-modules/ipython/default.nix          | 5 +++++
 pkgs/development/python-modules/jinja2/default.nix           | 5 +++++
 pkgs/development/python-modules/jupyter-core/default.nix     | 5 +++++
 pkgs/development/python-modules/matplotlib/default.nix       | 5 +++++
 pkgs/development/python-modules/memory-allocator/default.nix | 5 +++++
 pkgs/development/python-modules/mpmath/default.nix           | 5 +++++
 pkgs/development/python-modules/networkx/default.nix         | 5 +++++
 pkgs/development/python-modules/numpy/default.nix            | 4 ++++
 pkgs/development/python-modules/pexpect/default.nix          | 5 +++++
 pkgs/development/python-modules/pillow/default.nix           | 4 ++--
 pkgs/development/python-modules/pplpy/default.nix            | 5 +++++
 pkgs/development/python-modules/primecountpy/default.nix     | 5 +++++
 pkgs/development/python-modules/scipy/default.nix            | 4 ++++
 pkgs/development/python-modules/sympy/default.nix            | 5 +++++
 23 files changed, 109 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/science/math/lrcalc/default.nix b/pkgs/applications/science/math/lrcalc/default.nix
index 90ee50c68280..0d968e016179 100644
--- a/pkgs/applications/science/math/lrcalc/default.nix
+++ b/pkgs/applications/science/math/lrcalc/default.nix
@@ -1,6 +1,9 @@
 { lib, stdenv
 , fetchFromBitbucket
 , autoreconfHook
+
+# Reverse dependency
+, sage
 }:
 
 stdenv.mkDerivation rec {
@@ -20,6 +23,8 @@ stdenv.mkDerivation rec {
     autoreconfHook
   ];
 
+  passthru.tests = { inherit sage; };
+
   meta = with lib; {
     description = "Littlewood-Richardson calculator";
     homepage = "http://math.rutgers.edu/~asbuch/lrcalc/";
diff --git a/pkgs/development/python-modules/cypari2/default.nix b/pkgs/development/python-modules/cypari2/default.nix
index 025692de1f74..315492e38ee3 100644
--- a/pkgs/development/python-modules/cypari2/default.nix
+++ b/pkgs/development/python-modules/cypari2/default.nix
@@ -7,6 +7,9 @@
 , gmp
 , cython
 , cysignals
+
+# Reverse dependency
+, sage
 }:
 
 buildPythonPackage rec {
@@ -53,6 +56,8 @@ buildPythonPackage rec {
     make check
   '';
 
+  passthru.tests = { inherit sage; };
+
   meta = with lib; {
     description = "Cython bindings for PARI";
     license = licenses.gpl2Plus;
diff --git a/pkgs/development/python-modules/cysignals/default.nix b/pkgs/development/python-modules/cysignals/default.nix
index 62cc3dd30d8a..fc53c5c9f168 100644
--- a/pkgs/development/python-modules/cysignals/default.nix
+++ b/pkgs/development/python-modules/cysignals/default.nix
@@ -4,6 +4,9 @@
 , buildPythonPackage
 , cython
 , pariSupport ? true, pari # for interfacing with the PARI/GP signal handler
+
+# Reverse dependency
+, sage
 }:
 
 assert pariSupport -> pari != null;
@@ -46,6 +49,8 @@ buildPythonPackage rec {
 
   enableParallelBuilding = true;
 
+  passthru.tests = { inherit sage; };
+
   meta = with lib; {
     description = "Interrupt and signal handling for Cython";
     mainProgram = "cysignals-CSI";
diff --git a/pkgs/development/python-modules/cython/default.nix b/pkgs/development/python-modules/cython/default.nix
index e73c09f40b01..fecb9cad26ce 100644
--- a/pkgs/development/python-modules/cython/default.nix
+++ b/pkgs/development/python-modules/cython/default.nix
@@ -8,6 +8,9 @@
 , gdb
 , numpy
 , ncurses
+
+# Reverse dependency
+, sage
 }:
 
 let
@@ -57,6 +60,8 @@ in buildPythonPackage rec {
   doCheck = false;
   # doCheck = !stdenv.isDarwin;
 
+  passthru.tests = { inherit sage; };
+
   # force regeneration of generated code in source distributions
   # https://github.com/cython/cython/issues/5089
   setupHook = ./setup-hook.sh;
diff --git a/pkgs/development/python-modules/fpylll/default.nix b/pkgs/development/python-modules/fpylll/default.nix
index 95358d5f4aaf..2b4571b53edb 100644
--- a/pkgs/development/python-modules/fpylll/default.nix
+++ b/pkgs/development/python-modules/fpylll/default.nix
@@ -15,6 +15,9 @@
 , fplll
 , numpy
 
+# Reverse dependency
+, sage
+
 # tests
 , pytestCheckHook
 }:
@@ -72,6 +75,8 @@ buildPythonPackage rec {
     export PY_IGNORE_IMPORTMISMATCH=1
   '';
 
+  passthru.tests = { inherit sage; };
+
   meta = with lib; {
     description = "A Python interface for fplll";
     changelog = "https://github.com/fplll/fpylll/releases/tag/${version}";
diff --git a/pkgs/development/python-modules/gmpy2/default.nix b/pkgs/development/python-modules/gmpy2/default.nix
index b5a602d4f222..e3d4118c335b 100644
--- a/pkgs/development/python-modules/gmpy2/default.nix
+++ b/pkgs/development/python-modules/gmpy2/default.nix
@@ -5,6 +5,9 @@
 , gmp
 , mpfr
 , libmpc
+
+# Reverse dependency
+, sage
 }:
 
 let
@@ -29,6 +32,8 @@ buildPythonPackage {
 
   pythonImportsCheck = [ "gmpy2" ];
 
+  passthru.tests = { inherit sage; };
+
   meta = with lib; {
     description = "GMP/MPIR, MPFR, and MPC interface to Python 2.6+ and 3.x";
     homepage = "https://github.com/aleaxit/gmpy/";
diff --git a/pkgs/development/python-modules/importlib-metadata/default.nix b/pkgs/development/python-modules/importlib-metadata/default.nix
index 511424fb1983..df3106aac420 100644
--- a/pkgs/development/python-modules/importlib-metadata/default.nix
+++ b/pkgs/development/python-modules/importlib-metadata/default.nix
@@ -7,6 +7,9 @@
 , typing-extensions
 , toml
 , zipp
+
+# Reverse dependency
+, sage
 }:
 
 buildPythonPackage rec {
@@ -41,6 +44,8 @@ buildPythonPackage rec {
     "importlib_metadata"
   ];
 
+  passthru.tests = { inherit sage; };
+
   meta = with lib; {
     description = "Read metadata from Python packages";
     homepage = "https://importlib-metadata.readthedocs.io/";
diff --git a/pkgs/development/python-modules/importlib-resources/default.nix b/pkgs/development/python-modules/importlib-resources/default.nix
index a8407239cc40..1f4b01a41992 100644
--- a/pkgs/development/python-modules/importlib-resources/default.nix
+++ b/pkgs/development/python-modules/importlib-resources/default.nix
@@ -10,6 +10,9 @@
 # dependencies
 , importlib-metadata
 
+# Reverse dependency
+, sage
+
 # tests
 , jaraco-collections
 , pytestCheckHook
@@ -46,6 +49,8 @@ buildPythonPackage rec {
     "importlib_resources"
   ];
 
+  passthru.tests = { inherit sage; };
+
   meta = with lib; {
     description = "Read resources from Python packages";
     homepage = "https://importlib-resources.readthedocs.io/";
diff --git a/pkgs/development/python-modules/ipykernel/default.nix b/pkgs/development/python-modules/ipykernel/default.nix
index 394974103537..35cd3bad0aa4 100644
--- a/pkgs/development/python-modules/ipykernel/default.nix
+++ b/pkgs/development/python-modules/ipykernel/default.nix
@@ -18,6 +18,9 @@
 , pyzmq
 , tornado
 , traitlets
+
+# Reverse dependency
+, sage
 }:
 
 buildPythonPackage rec {
@@ -63,6 +66,7 @@ buildPythonPackage rec {
 
   passthru.tests = {
     pytest = callPackage ./tests.nix { };
+    inherit sage;
   };
 
   meta = {
diff --git a/pkgs/development/python-modules/ipython/default.nix b/pkgs/development/python-modules/ipython/default.nix
index 7a10725f2451..577b78804907 100644
--- a/pkgs/development/python-modules/ipython/default.nix
+++ b/pkgs/development/python-modules/ipython/default.nix
@@ -29,6 +29,9 @@
 , notebook
 , qtconsole
 
+# Reverse dependency
+, sage
+
 # Test dependencies
 , pickleshare
 , pytest-asyncio
@@ -106,6 +109,8 @@ buildPythonPackage rec {
     "test_clipboard_get"
   ];
 
+  passthru.tests = { inherit sage; };
+
   meta = with lib; {
     description = "IPython: Productive Interactive Computing";
     downloadPage = "https://github.com/ipython/ipython/";
diff --git a/pkgs/development/python-modules/jinja2/default.nix b/pkgs/development/python-modules/jinja2/default.nix
index 1c260e37c7b0..80b87378a6e4 100644
--- a/pkgs/development/python-modules/jinja2/default.nix
+++ b/pkgs/development/python-modules/jinja2/default.nix
@@ -12,6 +12,9 @@
 , setuptools
 , sphinxcontrib-log-cabinet
 , sphinx-issues
+
+# Reverse dependency
+, sage
 }:
 
 buildPythonPackage rec {
@@ -76,6 +79,8 @@ buildPythonPackage rec {
     inherit meta;
   };
 
+  passthru.tests = { inherit sage; };
+
   meta = with lib; {
     changelog = "https://github.com/pallets/jinja/blob/${version}/CHANGES.rst";
     description = "Very fast and expressive template engine";
diff --git a/pkgs/development/python-modules/jupyter-core/default.nix b/pkgs/development/python-modules/jupyter-core/default.nix
index 799e098920a8..c1faa97b1ef8 100644
--- a/pkgs/development/python-modules/jupyter-core/default.nix
+++ b/pkgs/development/python-modules/jupyter-core/default.nix
@@ -7,6 +7,9 @@
 , traitlets
 , pip
 , pytestCheckHook
+
+# Reverse dependency
+, sage
 }:
 
 buildPythonPackage rec {
@@ -61,6 +64,8 @@ buildPythonPackage rec {
 
   pythonImportsCheck = [ "jupyter_core" ];
 
+  passthru.tests = { inherit sage; };
+
   meta = with lib; {
     description = "Base package on which Jupyter projects rely";
     homepage = "https://jupyter.org/";
diff --git a/pkgs/development/python-modules/matplotlib/default.nix b/pkgs/development/python-modules/matplotlib/default.nix
index bf1e7a86323e..a23b9540538c 100644
--- a/pkgs/development/python-modules/matplotlib/default.nix
+++ b/pkgs/development/python-modules/matplotlib/default.nix
@@ -69,6 +69,9 @@
 # required for headless detection
 , libX11
 , wayland
+
+# Reverse dependency
+, sage
 }:
 
 let
@@ -183,6 +186,8 @@ buildPythonPackage rec {
     };
   };
 
+  passthru.tests = { inherit sage; };
+
   env.MPLSETUPCFG = writeText "mplsetup.cfg" (lib.generators.toINI {} passthru.config);
 
   # Encountering a ModuleNotFoundError, as describved and investigated at:
diff --git a/pkgs/development/python-modules/memory-allocator/default.nix b/pkgs/development/python-modules/memory-allocator/default.nix
index c4ddc5d06a1b..34dd55bb8dc6 100644
--- a/pkgs/development/python-modules/memory-allocator/default.nix
+++ b/pkgs/development/python-modules/memory-allocator/default.nix
@@ -2,6 +2,9 @@
 , fetchPypi
 , buildPythonPackage
 , cython
+
+# Reverse dependency
+, sage
 }:
 
 buildPythonPackage rec {
@@ -19,6 +22,8 @@ buildPythonPackage rec {
 
   pythonImportsCheck = [ "memory_allocator" ];
 
+  passthru.tests = { inherit sage; };
+
   meta = with lib; {
     description = "An extension class to allocate memory easily with cython";
     homepage = "https://github.com/sagemath/memory_allocator/";
diff --git a/pkgs/development/python-modules/mpmath/default.nix b/pkgs/development/python-modules/mpmath/default.nix
index 1a8e4c030979..20e7049ac370 100644
--- a/pkgs/development/python-modules/mpmath/default.nix
+++ b/pkgs/development/python-modules/mpmath/default.nix
@@ -5,6 +5,9 @@
 , isPyPy
 , setuptools
 , pytestCheckHook
+
+# Reverse dependency
+, sage
 }:
 
 buildPythonPackage rec {
@@ -29,6 +32,8 @@ buildPythonPackage rec {
     ];
   };
 
+  passthru.tests = { inherit sage; };
+
   nativeCheckInputs = [
     pytestCheckHook
   ];
diff --git a/pkgs/development/python-modules/networkx/default.nix b/pkgs/development/python-modules/networkx/default.nix
index 40a6cdcf4b2e..ac0bd456bcda 100644
--- a/pkgs/development/python-modules/networkx/default.nix
+++ b/pkgs/development/python-modules/networkx/default.nix
@@ -19,6 +19,9 @@
 # tests
 , pytest-xdist
 , pytestCheckHook
+
+# reverse dependency
+, sage
 }:
 
 buildPythonPackage rec {
@@ -53,6 +56,8 @@ buildPythonPackage rec {
     ];
   };
 
+  passthru.tests = { inherit sage; };
+
   nativeCheckInputs = [
     pytest-xdist
     pytestCheckHook
diff --git a/pkgs/development/python-modules/numpy/default.nix b/pkgs/development/python-modules/numpy/default.nix
index c2d38cc31b24..f0acca333f85 100644
--- a/pkgs/development/python-modules/numpy/default.nix
+++ b/pkgs/development/python-modules/numpy/default.nix
@@ -19,6 +19,9 @@
 , blas
 , lapack
 
+# Reverse dependency
+, sage
+
 # tests
 , hypothesis
 , pytest-xdist
@@ -177,6 +180,7 @@ in buildPythonPackage rec {
     blas = blas.provider;
     blasImplementation = blas.implementation;
     inherit cfg;
+    tests = { inherit sage; };
   };
 
   # Disable test
diff --git a/pkgs/development/python-modules/pexpect/default.nix b/pkgs/development/python-modules/pexpect/default.nix
index e8c5efc3cba3..f98e531c0d54 100644
--- a/pkgs/development/python-modules/pexpect/default.nix
+++ b/pkgs/development/python-modules/pexpect/default.nix
@@ -3,6 +3,9 @@
 , fetchPypi
 , setuptools
 , ptyprocess
+
+# Reverse dependency
+, sage
 }:
 
 buildPythonPackage (rec {
@@ -24,6 +27,8 @@ buildPythonPackage (rec {
 
   propagatedBuildInputs = [ ptyprocess ];
 
+  passthru.tests = { inherit sage; };
+
   meta = with lib; {
     homepage = "http://www.noah.org/wiki/Pexpect";
     description = "Automate interactive console applications such as ssh, ftp, etc";
diff --git a/pkgs/development/python-modules/pillow/default.nix b/pkgs/development/python-modules/pillow/default.nix
index a576b47bda19..f320000eecdc 100644
--- a/pkgs/development/python-modules/pillow/default.nix
+++ b/pkgs/development/python-modules/pillow/default.nix
@@ -7,7 +7,7 @@
 , defusedxml, olefile, freetype, libjpeg, zlib, libtiff, libwebp, libxcrypt, tcl, lcms2, tk, libX11
 , libxcb, openjpeg, libimagequant, numpy, pytestCheckHook, setuptools
 # for passthru.tests
-, imageio, matplotlib, pilkit, pydicom, reportlab
+, imageio, matplotlib, pilkit, pydicom, reportlab, sage
 }@args:
 
 import ./generic.nix (rec {
@@ -24,7 +24,7 @@ import ./generic.nix (rec {
   };
 
   passthru.tests = {
-    inherit imageio matplotlib pilkit pydicom reportlab;
+    inherit imageio matplotlib pilkit pydicom reportlab sage;
   };
 
   meta = with lib; {
diff --git a/pkgs/development/python-modules/pplpy/default.nix b/pkgs/development/python-modules/pplpy/default.nix
index 641008be07fc..4a4d97c554cf 100644
--- a/pkgs/development/python-modules/pplpy/default.nix
+++ b/pkgs/development/python-modules/pplpy/default.nix
@@ -9,6 +9,9 @@
 , cysignals
 , gmpy2
 , sphinx
+
+# Reverse dependency
+, sage
 }:
 
 buildPythonPackage rec {
@@ -54,6 +57,8 @@ buildPythonPackage rec {
     mv docs/build/html "$doc/share/doc/pplpy"
   '';
 
+  passthru.tests = { inherit sage; };
+
   meta = with lib; {
     description = "A Python wrapper for ppl";
     homepage = "https://gitlab.com/videlec/pplpy";
diff --git a/pkgs/development/python-modules/primecountpy/default.nix b/pkgs/development/python-modules/primecountpy/default.nix
index 463a0cf50be6..60ae77e7dd94 100644
--- a/pkgs/development/python-modules/primecountpy/default.nix
+++ b/pkgs/development/python-modules/primecountpy/default.nix
@@ -4,6 +4,9 @@
 , primecount
 , cython
 , cysignals
+
+# Reverse dependency
+, sage
 }:
 
 buildPythonPackage rec {
@@ -25,6 +28,8 @@ buildPythonPackage rec {
 
   pythonImportsCheck = [ "primecountpy" ];
 
+  passthru.tests = { inherit sage; };
+
   meta = with lib; {
     description = "Cython interface for C++ primecount library";
     homepage = "https://github.com/dimpase/primecountpy/";
diff --git a/pkgs/development/python-modules/scipy/default.nix b/pkgs/development/python-modules/scipy/default.nix
index 64e261c37403..57769c7f6afe 100644
--- a/pkgs/development/python-modules/scipy/default.nix
+++ b/pkgs/development/python-modules/scipy/default.nix
@@ -25,6 +25,9 @@
 , xsimd
 , blas
 , lapack
+
+# Reverse dependency
+, sage
 }:
 
 let
@@ -193,6 +196,7 @@ in buildPythonPackage {
     # Pass it the names of the datasets to update their hashes
     ++ (builtins.attrNames datasetsHashes)
     ;
+    tests = { inherit sage; };
   };
 
   SCIPY_USE_G77_ABI_WRAPPER = 1;
diff --git a/pkgs/development/python-modules/sympy/default.nix b/pkgs/development/python-modules/sympy/default.nix
index d2a10492153e..1954f8bc591f 100644
--- a/pkgs/development/python-modules/sympy/default.nix
+++ b/pkgs/development/python-modules/sympy/default.nix
@@ -3,6 +3,9 @@
 , fetchPypi
 , glibcLocales
 , mpmath
+
+# Reverse dependency
+, sage
 }:
 
 buildPythonPackage rec {
@@ -27,6 +30,8 @@ buildPythonPackage rec {
     export LANG="en_US.UTF-8"
   '';
 
+  passthru.tests = { inherit sage; };
+
   meta = with lib; {
     description = "A Python library for symbolic mathematics";
     mainProgram = "isympy";