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deeptools: init at 3.3.1

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scalavision 2019-10-31 19:34:05 +01:00 committed by Jon
parent f379992680
commit d9b40f6397
2 changed files with 44 additions and 0 deletions
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42
pkgs/applications/science/biology/deeptools/default.nix Normal file
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@ -0,0 +1,42 @@
{ lib
, python
}:
with python.pkgs;
buildPythonApplication rec {
pname = "deepTools";
version = "3.3.1";
src = fetchPypi {
inherit pname version;
sha256 = "08p36p9ncj5s8qf1r7h83x4rnmi63l3yk6mnr3wgpg2qgvwl0hji";
};
propagatedBuildInputs = [
numpy
numpydoc
scipy
py2bit
pybigwig
pysam
matplotlib
plotly
deeptoolsintervals
];
checkInputs = [ pytest ];
meta = with lib; {
homepage = "https://deeptools.readthedocs.io/en/develop";
description = "Tools for exploring deep DNA sequencing data";
longDescription = ''
deepTools contains useful modules to process the mapped reads data for multiple
quality checks, creating normalized coverage files in standard bedGraph and bigWig
file formats, that allow comparison between different files (for example, treatment and control).
Finally, using such normalized and standardized files, deepTools can create many
publication-ready visualizations to identify enrichments and for functional
annotations of the genome.
'';
license = licenses.gpl3;
maintainers = with maintainers; [ scalavision ];
};
}

2
pkgs/top-level/all-packages.nix
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@ -23286,6 +23286,8 @@ in
dcm2niix = callPackage ../applications/science/biology/dcm2niix { };
deeptools = callPackage ../applications/science/biology/deeptools { python = python3; };
delly = callPackage ../applications/science/biology/delly { };
diamond = callPackage ../applications/science/biology/diamond { };