From c4cad4508229bf6e1b93ea51ffb6af985d965513 Mon Sep 17 00:00:00 2001
From: Sergei Khoma <srghma@gmail.com>
Date: Sun, 3 Jun 2018 20:03:34 +0300
Subject: [PATCH 0001/1129] fix typo

based on https://www.ec2instances.info/
---
 nixos/modules/virtualisation/amazon-image.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nixos/modules/virtualisation/amazon-image.nix b/nixos/modules/virtualisation/amazon-image.nix
index 6cb9e07ae820..b0354009a7f6 100644
--- a/nixos/modules/virtualisation/amazon-image.nix
+++ b/nixos/modules/virtualisation/amazon-image.nix
@@ -60,7 +60,7 @@ let cfg = config.ec2; in
     # Mount all formatted ephemeral disks and activate all swap devices.
     # We cannot do this with the ‘fileSystems’ and ‘swapDevices’ options
     # because the set of devices is dependent on the instance type
-    # (e.g. "m1.large" has one ephemeral filesystem and one swap device,
+    # (e.g. "m1.small" has one ephemeral filesystem and one swap device,
     # while "m1.large" has two ephemeral filesystems and no swap
     # devices).  Also, put /tmp and /var on /disk0, since it has a lot
     # more space than the root device.  Similarly, "move" /nix to /disk0

From f9f6ddc083f2183f042bfcf1d0bba8e42b920110 Mon Sep 17 00:00:00 2001
From: Daniel Barlow <dan@telent.net>
Date: Fri, 29 Jun 2018 23:16:39 +0000
Subject: [PATCH 0002/1129] make-closure needs build system mkdir and jq

Make make-closure work when cross-compiling
---
 pkgs/build-support/closure-info.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/build-support/closure-info.nix b/pkgs/build-support/closure-info.nix
index 58d70b4b0631..28f2802a5bce 100644
--- a/pkgs/build-support/closure-info.nix
+++ b/pkgs/build-support/closure-info.nix
@@ -4,7 +4,7 @@
 # "nix-store --load-db" and "nix-store --register-validity
 # --hash-given".
 
-{ stdenv, coreutils, jq }:
+{ stdenv, coreutils, jq, buildPackages }:
 
 { rootPaths }:
 
@@ -17,7 +17,7 @@ stdenv.mkDerivation {
 
   exportReferencesGraph.closure = rootPaths;
 
-  PATH = "${coreutils}/bin:${jq}/bin";
+  PATH = "${buildPackages.coreutils}/bin:${buildPackages.jq}/bin";
 
   builder = builtins.toFile "builder"
     ''

From 213743d4d073d373254b9ff7850a49813b5910e1 Mon Sep 17 00:00:00 2001
From: Kevin Liu <kevin@potatofrom.space>
Date: Tue, 17 Jul 2018 14:30:05 -0400
Subject: [PATCH 0003/1129] rdocker: init at unstable-2018-07-17

---
 pkgs/development/tools/rdocker/default.nix | 32 ++++++++++++++++++++++
 pkgs/top-level/all-packages.nix            |  2 ++
 2 files changed, 34 insertions(+)
 create mode 100644 pkgs/development/tools/rdocker/default.nix

diff --git a/pkgs/development/tools/rdocker/default.nix b/pkgs/development/tools/rdocker/default.nix
new file mode 100644
index 000000000000..a5683e7a953d
--- /dev/null
+++ b/pkgs/development/tools/rdocker/default.nix
@@ -0,0 +1,32 @@
+{ stdenv, fetchFromGitHub, makeWrapper, openssh }:
+
+stdenv.mkDerivation rec {
+  name = "rdocker-${version}";
+  version = "unstable-2018-07-17";
+
+  src = fetchFromGitHub {
+    owner = "dvddarias";
+    repo = "rdocker";
+    rev = "949377de0154ade2d28c6d4c4ec33b65ea813b5a";
+    sha256 = "1mwg9zh144q4fqk9016v2d347vzch8sxlixaxrz0ci9dxvs6ibd4";
+  };
+
+  nativeBuildInputs = [ makeWrapper ];
+
+  installPhase = ''
+    install -Dm755 rdocker.sh $out/bin/rdocker
+  '';
+
+  postInstall = ''
+    wrapProgram $out/bin/rdocker \
+      --prefix PATH : ${stdenv.lib.makeBinPath [ openssh ]}
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Securely control a remote docker daemon CLI using ssh forwarding, no SSL setup needed";
+    homepage = https://github.com/dvddarias/rdocker;
+    maintainers = [ stdenv.lib.maintainers.pneumaticat ];
+    license = licenses.mit;
+    platforms = platforms.unix;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index c42510a5c8d9..a52a0295eac1 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -8450,6 +8450,8 @@ with pkgs;
 
   hammer = callPackage ../development/tools/parsing/hammer { };
 
+  rdocker = callPackage ../development/tools/rdocker { };
+
   redis-dump = callPackage ../development/tools/redis-dump { };
 
   redo = callPackage ../development/tools/build-managers/redo { };

From 6c568b664410fad7f704a5cb19f6240305707abc Mon Sep 17 00:00:00 2001
From: Robert Hensing <roberth@users.noreply.github.com>
Date: Tue, 25 Sep 2018 18:04:37 +0200
Subject: [PATCH 0004/1129] rabbitmq module: Update documentation

Elaborate on the two config file formats.
---
 nixos/modules/services/amqp/rabbitmq.nix | 27 +++++++++++++++++++-----
 1 file changed, 22 insertions(+), 5 deletions(-)

diff --git a/nixos/modules/services/amqp/rabbitmq.nix b/nixos/modules/services/amqp/rabbitmq.nix
index c6878dd67dbf..43998296a18f 100644
--- a/nixos/modules/services/amqp/rabbitmq.nix
+++ b/nixos/modules/services/amqp/rabbitmq.nix
@@ -87,9 +87,19 @@ in {
           }
         '';
         description = ''
-          New style config options.
+          Configuration options in RabbitMQ's new config file format,
+          which is a simple key-value format that can not express nested
+          data structures. This is known as the <literal>rabbitmq.conf</literal> file,
+          although outside NixOS that filename may have Erlang syntax, particularly
+          prior to RabbitMQ 3.7.0.
 
-          See http://www.rabbitmq.com/configure.html
+          If you do need to express nested data structures, you can use
+          <literal>config</literal> option. Configuration from <literal>config</literal>
+          will be merged into the these options by RabbitMQ at runtime to
+          form the final configuration.
+
+          See http://www.rabbitmq.com/configure.html#config-items
+          For the distinct formats, see http://www.rabbitmq.com/configure.html#config-file-formats
         '';
       };
 
@@ -97,10 +107,17 @@ in {
         default = "";
         type = types.str;
         description = ''
-          Verbatim advanced configuration file contents.
-          Prefered way is to use configItems.
+          Verbatim advanced configuration file contents using the Erlang syntax.
+          This is also known as the <literal>advanced.config</literal> file or the old config format.
 
-          See http://www.rabbitmq.com/configure.html
+          Where possible, the use <literal>configItems</literal> is preferred. However, nested
+          data structures can only be expressed properly using the <literal>config</literal> option.
+
+          The contents of this option will be merged into the <literal>configItems</literal>
+          by RabbitMQ at runtime to form the final configuration.
+
+          See the second table on http://www.rabbitmq.com/configure.html#config-items
+          For the distinct formats, see http://www.rabbitmq.com/configure.html#config-file-formats
         '';
       };
 

From bbffdfcf7296388f9022c2bf1eae305bd3163f96 Mon Sep 17 00:00:00 2001
From: Linus Heckemann <git@sphalerite.org>
Date: Mon, 30 Oct 2017 18:42:16 +0100
Subject: [PATCH 0005/1129] Document make-channel.nix

---
 nixos/lib/make-channel.nix | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/nixos/lib/make-channel.nix b/nixos/lib/make-channel.nix
index fd805f7f943f..0db4a46151de 100644
--- a/nixos/lib/make-channel.nix
+++ b/nixos/lib/make-channel.nix
@@ -1,3 +1,7 @@
+/* Build a channel tarball. These contain, in addition to the nixpkgs
+ * expressions themselves, files that indicate the version of nixpkgs
+ * that they represent. This only seems to be used by Travis.
+ */
 { pkgs, nixpkgs, version, versionSuffix }:
 
 pkgs.releaseTools.makeSourceTarball {

From 50795f37c614a42aa4bc97b0851302c208af9c44 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 2 Oct 2018 18:38:28 -0300
Subject: [PATCH 0006/1129] maia-icon-theme: 2016-09-16 -> 2018-02-24

- Update to newer revision
- Update homepage
- Update src
- Update license
- Add dependency on hicolor-icon-theme
- Build GTK icon cache
---
 pkgs/data/icons/maia-icon-theme/default.nix | 30 ++++++++++++++-------
 1 file changed, 21 insertions(+), 9 deletions(-)

diff --git a/pkgs/data/icons/maia-icon-theme/default.nix b/pkgs/data/icons/maia-icon-theme/default.nix
index 82aafca11f4f..7b4ed7a66809 100644
--- a/pkgs/data/icons/maia-icon-theme/default.nix
+++ b/pkgs/data/icons/maia-icon-theme/default.nix
@@ -1,14 +1,16 @@
-{ stdenv, fetchFromGitHub, cmake, extra-cmake-modules, gtk3, kdeFrameworks }:
+{ stdenv, fetchFromGitLab, cmake, extra-cmake-modules, gtk3, kdeFrameworks, hicolor-icon-theme }:
 
 stdenv.mkDerivation rec {
   name = "maia-icon-theme-${version}";
-  version = "2016-09-16";
+  version = "2018-02-24";
 
-  src = fetchFromGitHub {
-    owner = "manjaro";
-    repo = "artwork-maia";
-    rev = "f6718cd9c383adb77af54b694c47efa4d581f5b5";
-    sha256 = "0f9l3k9abgg8islzddrxgbxaw6vbai5bvz5qi1v2fzir7ykx7bgj";
+  src = fetchFromGitLab {
+    domain = "gitlab.manjaro.org";
+    group = "artwork";
+    owner = "themes";
+    repo = "maia";
+    rev = "b61312cc80cb9d12b0d8a55b3e61668eb6b77d2d";
+    sha256 = "1g98snlh96z4sqw9sfd7fxgamh45pcj3lh1kcmng7mirvrcn2pam";
   };
 
   nativeBuildInputs = [
@@ -19,10 +21,20 @@ stdenv.mkDerivation rec {
     kdeFrameworks.kwindowsystem
   ];
 
+  buildInputs = [
+    hicolor-icon-theme
+  ];
+
+  postFixup = ''
+    for theme in $out/share/icons/*; do
+      gtk-update-icon-cache $theme
+    done
+  '';
+
   meta = with stdenv.lib; {
     description = "Icons based on Breeze and Super Flat Remix";
-    homepage = https://github.com/manjaro/artwork-maia;
-    license = licenses.free; # https://github.com/manjaro/artwork-maia/issues/27
+    homepage = https://gitlab.manjaro.org/artwork/themes/maia;
+    license = licenses.lgpl3;
     maintainers = with maintainers; [ mounium ];
     platforms = platforms.all;
   };

From 3a7ae58f9662c16709c61d90c94fd909de6f8bb7 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 2 Oct 2018 18:42:18 -0300
Subject: [PATCH 0007/1129] paper-icon-theme: build GTK icon cache for
 Paper-Mono-Dark

---
 pkgs/data/icons/paper-icon-theme/default.nix | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/pkgs/data/icons/paper-icon-theme/default.nix b/pkgs/data/icons/paper-icon-theme/default.nix
index b16c9b076824..de808e44ea6c 100644
--- a/pkgs/data/icons/paper-icon-theme/default.nix
+++ b/pkgs/data/icons/paper-icon-theme/default.nix
@@ -18,6 +18,11 @@ stdenv.mkDerivation rec {
     patchShebangs meson/post_install.py
   '';
 
+  postInstall = ''
+    # The cache for Paper-Mono-Dark is missing
+    gtk-update-icon-cache "$out"/share/icons/Paper-Mono-Dark;
+  '';
+
   meta = with stdenv.lib; {
     description = "Modern icon theme designed around bold colours and simple geometric shapes";
     homepage = https://snwh.org/paper;

From 056c03aeb38cf474240d8b10fcb00a4c84d20695 Mon Sep 17 00:00:00 2001
From: Cole Mickens <cole.mickens@gmail.com>
Date: Fri, 28 Sep 2018 02:04:21 -0700
Subject: [PATCH 0008/1129] konqueror: init at 18.08

---
 pkgs/applications/kde/default.nix   |  1 +
 pkgs/applications/kde/konqueror.nix | 20 ++++++++++++++++++++
 2 files changed, 21 insertions(+)
 create mode 100644 pkgs/applications/kde/konqueror.nix

diff --git a/pkgs/applications/kde/default.nix b/pkgs/applications/kde/default.nix
index 072b66e55638..16c3a47431c9 100644
--- a/pkgs/applications/kde/default.nix
+++ b/pkgs/applications/kde/default.nix
@@ -129,6 +129,7 @@ let
       kontact = callPackage ./kontact.nix {};
       kontactinterface = callPackage ./kontactinterface.nix {};
       konquest = callPackage ./konquest.nix {};
+      konqueror = callPackage ./konqueror.nix {};
       korganizer = callPackage ./korganizer.nix {};
       kpimtextedit = callPackage ./kpimtextedit.nix {};
       ksmtp = callPackage ./ksmtp {};
diff --git a/pkgs/applications/kde/konqueror.nix b/pkgs/applications/kde/konqueror.nix
new file mode 100644
index 000000000000..e6442fea2f9d
--- /dev/null
+++ b/pkgs/applications/kde/konqueror.nix
@@ -0,0 +1,20 @@
+{ lib
+, mkDerivation
+, extra-cmake-modules, kdoctools
+, kdelibs4support, kcmutils, khtml, kdesu
+, qtwebkit, qtwebengine, qtx11extras, qtscript, qtwayland
+}:
+
+mkDerivation {
+  name = "konqueror";
+  nativeBuildInputs = [ extra-cmake-modules kdoctools ];
+  buildInputs = [
+    kdelibs4support kcmutils khtml kdesu
+    qtwebkit qtwebengine qtx11extras qtscript qtwayland
+  ];
+  meta = {
+    license = with lib.licenses; [ gpl2 ];
+    maintainers = with lib.maintainers; [ ];
+  };
+}
+

From e2e23ddd89f613d456fb54398ff8291d1f8ace9c Mon Sep 17 00:00:00 2001
From: Andrew Childs <lorne@cons.org.nz>
Date: Mon, 8 Oct 2018 22:21:09 +0900
Subject: [PATCH 0009/1129] gnome3.mutter: fix crash on startup with nvidia
 drivers

---
 pkgs/desktops/gnome-3/core/mutter/default.nix | 10 +++++++++-
 1 file changed, 9 insertions(+), 1 deletion(-)

diff --git a/pkgs/desktops/gnome-3/core/mutter/default.nix b/pkgs/desktops/gnome-3/core/mutter/default.nix
index a08e0fd3cd1a..34830117b777 100644
--- a/pkgs/desktops/gnome-3/core/mutter/default.nix
+++ b/pkgs/desktops/gnome-3/core/mutter/default.nix
@@ -1,7 +1,7 @@
 { fetchurl, stdenv, pkgconfig, gnome3, intltool, gobjectIntrospection, upower, cairo
 , pango, cogl, clutter, libstartup_notification, zenity, libcanberra-gtk3
 , libtool, makeWrapper, xkeyboard_config, libxkbfile, libxkbcommon, libXtst, libinput
-, pipewire, libgudev, libwacom, xwayland, autoreconfHook }:
+, pipewire, libgudev, libwacom, xwayland, autoreconfHook, fetchpatch }:
 
 stdenv.mkDerivation rec {
   name = "mutter-${version}";
@@ -16,6 +16,14 @@ stdenv.mkDerivation rec {
     updateScript = gnome3.updateScript { packageName = "mutter"; attrPath = "gnome3.mutter"; };
   };
 
+  patches = [
+    # https://gitlab.gnome.org/GNOME/mutter/merge_requests/172
+    (fetchpatch {
+      url = https://gitlab.gnome.org/GNOME/mutter/commit/62660bbd.patch;
+      sha256 = "1qq8vxlqnyrqh94dc0dh1aj1dsbyw6bwv3x46q5vsscbbxbiv9wk";
+    })
+  ];
+
   configureFlags = [
     "--with-x"
     "--disable-static"

From 6837d0d5c98a19aeb63fc82d6806600fd4c8907e Mon Sep 17 00:00:00 2001
From: Justin Humm <justin.humm@posteo.de>
Date: Fri, 5 Oct 2018 14:03:11 +0200
Subject: [PATCH 0010/1129] scribusUnstable: init at 2018-10-13

---
 pkgs/applications/office/scribus/unstable.nix | 39 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 2 files changed, 41 insertions(+)
 create mode 100644 pkgs/applications/office/scribus/unstable.nix

diff --git a/pkgs/applications/office/scribus/unstable.nix b/pkgs/applications/office/scribus/unstable.nix
new file mode 100644
index 000000000000..4b1595db42a4
--- /dev/null
+++ b/pkgs/applications/office/scribus/unstable.nix
@@ -0,0 +1,39 @@
+{ stdenv, fetchsvn, makeWrapper, pkgconfig, cmake, qtbase, cairo, pixman,
+boost, cups, fontconfig, freetype, hunspell, libjpeg, libtiff, libxml2, lcms2,
+podofo, poppler, poppler_data, python2, harfbuzz, qtimageformats, qttools }:
+
+let
+  pythonEnv = python2.withPackages(ps: [ps.tkinter ps.pillow]);
+  revision = "22730";
+in 
+stdenv.mkDerivation rec {
+  name = "scribus-unstable-${version}";
+  version = "2018-10-13";
+
+  src = fetchsvn {
+    url = "svn://scribus.net/trunk/Scribus";
+    rev = revision;
+    sha256 = "1nlg4qva0fach8fi07r1pakjjlijishpwzlgpnxyaz7r31yjaw63";
+  };
+
+  enableParallelBuilding = true;
+
+  buildInputs = [
+    makeWrapper pkgconfig cmake qtbase cairo pixman boost cups fontconfig
+    freetype hunspell libjpeg libtiff libxml2 lcms2 podofo poppler
+    poppler_data pythonEnv harfbuzz qtimageformats qttools
+  ];
+
+  postFixup = ''
+    wrapProgram $out/bin/scribus \
+      --prefix QT_PLUGIN_PATH : "${qtbase}/${qtbase.qtPluginPrefix}"
+  '';
+
+  meta = {
+    maintainers = [ stdenv.lib.maintainers.erictapen ];
+    platforms = stdenv.lib.platforms.linux;
+    description = "Desktop Publishing (DTP) and Layout program for Linux";
+    homepage = http://www.scribus.net;
+    license = stdenv.lib.licenses.gpl2;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 124c9f36e532..f08ff165ad22 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -18698,6 +18698,8 @@ with pkgs;
     inherit (gnome2) libart_lgpl;
   };
 
+  scribusUnstable = libsForQt5.callPackage ../applications/office/scribus/unstable.nix { };
+
   seafile-client = libsForQt5.callPackage ../applications/networking/seafile-client { };
 
   seeks = callPackage ../tools/networking/p2p/seeks {

From 7717a2b844967ab1f53b7b89de7a35596fa9616d Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Fri, 14 Sep 2018 02:08:48 -0400
Subject: [PATCH 0011/1129] dl-poly-classic: init 1.10

only mpi version provided
---
 .../dl-poly-classic/default.nix               | 37 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  4 ++
 2 files changed, 41 insertions(+)
 create mode 100644 pkgs/applications/science/molecular-dynamics/dl-poly-classic/default.nix

diff --git a/pkgs/applications/science/molecular-dynamics/dl-poly-classic/default.nix b/pkgs/applications/science/molecular-dynamics/dl-poly-classic/default.nix
new file mode 100644
index 000000000000..1986f3b75ec1
--- /dev/null
+++ b/pkgs/applications/science/molecular-dynamics/dl-poly-classic/default.nix
@@ -0,0 +1,37 @@
+{ stdenv, fetchurl
+, gfortran, mpi
+}:
+
+stdenv.mkDerivation rec {
+  version = "1.10";
+  name = "DL_POLY_Classic-${version}";
+
+  src = fetchurl {
+    url = "https://ccpforge.cse.rl.ac.uk/gf/download/frsrelease/574/8924/dl_class_1.10.tar.gz";
+    sha256 = "1r76zvln3bwycxlmqday0sqzv5j260y7mdh66as2aqny6jzd5ld7";
+  };
+
+  buildInputs = [ mpi gfortran ];
+
+  configurePhase = ''
+    cd source
+    cp -v ../build/MakePAR Makefile
+  '';
+
+  buildPhase = ''
+    make dlpoly
+  '';
+
+  installPhase = ''
+    mkdir -p $out/bin
+    cp -v ../execute/DLPOLY.X $out/bin
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = https://www.ccp5.ac.uk/DL_POLY_C;
+    description = "DL_POLY Classic is a general purpose molecular dynamics simulation package";
+    license = licenses.bsdOriginal;
+    platforms = [ "x86_64-linux" ];
+    maintainers = [ maintainers.costrouc ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index aaa8da74333d..661bf5086c02 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -21138,6 +21138,10 @@ with pkgs;
 
   ### SCIENCE/MOLECULAR-DYNAMICS
 
+  dl-poly-classic-mpi = callPackage ../applications/science/molecular-dynamics/dl-poly-classic {
+    mpi = openmpi;
+  };
+
   lammps = callPackage ../applications/science/molecular-dynamics/lammps {
     fftw = fftw;
   };

From 397e15f89e849d255db2384b38c5594357cc8daa Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Fri, 14 Sep 2018 02:09:39 -0400
Subject: [PATCH 0012/1129] lammps: patch_2Aug2018 -> stable_22Aug2018

nix derivation was cleaned significantly to follow nixpkgs better
---
 .../molecular-dynamics/lammps/default.nix     | 71 +++++++++----------
 pkgs/top-level/all-packages.nix               |  3 +-
 2 files changed, 33 insertions(+), 41 deletions(-)

diff --git a/pkgs/applications/science/molecular-dynamics/lammps/default.nix b/pkgs/applications/science/molecular-dynamics/lammps/default.nix
index 03e37ad9d935..f4491053e4c8 100644
--- a/pkgs/applications/science/molecular-dynamics/lammps/default.nix
+++ b/pkgs/applications/science/molecular-dynamics/lammps/default.nix
@@ -1,63 +1,56 @@
-{ lib
-, bash
-, stdenv
-, writeText
-, fetchFromGitHub
-, libpng
-, gzip
-, fftw
-, openblas
-, mpiSupport ? false, mpi ? null
+{ stdenv, fetchFromGitHub
+, libpng, gzip, fftw, openblas
+, mpi ? null
 }:
-
-assert mpiSupport -> mpi != null;
-
+let packages = [
+     "asphere" "body" "class2" "colloid" "compress" "coreshell"
+     "dipole" "granular" "kspace" "manybody" "mc" "misc" "molecule"
+     "opt" "peri" "qeq" "replica" "rigid" "shock" "snap" "srd" "user-reaxc"
+    ];
+    lammps_includes = "-DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64";
+    withMPI = (mpi != null);
+in
 stdenv.mkDerivation rec {
   # LAMMPS has weird versioning converted to ISO 8601 format
-  version = "patch_2Aug2018";
+  version = "stable_22Aug2018";
   name = "lammps-${version}";
 
-  lammps_packages = "asphere body class2 colloid compress coreshell dipole granular kspace manybody mc misc molecule opt peri qeq replica rigid shock snap srd user-reaxc";
-  lammps_includes = "-DLAMMPS_EXCEPTIONS -DLAMMPS_GZIP -DLAMMPS_MEMALIGN=64";
-
   src = fetchFromGitHub {
     owner = "lammps";
     repo = "lammps";
     rev = "${version}";
-    sha256 = "1ph9pr7s11wgmspmnhxa55bh1pq2cyl8iimfi62lbpbpl9pr1ilc";
+    sha256 = "1dlifm9wm1jcw2zwal3fnzzl41ng08c7v48w6hx2mz84zljg1nsj";
   };
 
   passthru = {
     inherit mpi;
+    inherit packages;
   };
 
-  buildInputs = [ fftw libpng openblas gzip bash ]
-  ++ (stdenv.lib.optionals mpiSupport [ mpi ]);
+  buildInputs = [ fftw libpng openblas gzip ]
+    ++ (stdenv.lib.optionals withMPI [ mpi ]);
+
+  configurePhase = ''
+    cd src
+    for pack in ${stdenv.lib.concatStringsSep " " packages}; do make "yes-$pack" SHELL=$SHELL; done
+  '';
 
   # Must do manual build due to LAMMPS requiring a seperate build for
-  # the libraries and executable
-  builder = writeText "builder.sh" ''
-    source $stdenv/setup
+  # the libraries and executable. Also non-typical make script
+  buildPhase = ''
+    make mode=exe ${if withMPI then "mpi" else "serial"} SHELL=$SHELL LMP_INC="${lammps_includes}" FFT_PATH=-DFFT_FFTW3 FFT_LIB=-lfftw3 JPG_LIB=-lpng
+    make mode=shlib ${if withMPI then "mpi" else "serial"} SHELL=$SHELL LMP_INC="${lammps_includes}" FFT_PATH=-DFFT_FFTW3 FFT_LIB=-lfftw3 JPG_LIB=-lpng
+  '';
 
-    mkdir lammps
-    cp -r $src/lib $src/src lammps
-    chmod -R 755 lammps/src/
-    cd lammps/src
-    for pack in ${lammps_packages}; do make "yes-$pack" SHELL=$SHELL; done
-    make mode=exe ${if mpiSupport then "mpi" else "serial"} SHELL=$SHELL LMP_INC="${lammps_includes}" FFT_PATH=-DFFT_FFTW3 FFT_LIB=-lfftw3 JPG_LIB=-lpng
-    make mode=shlib ${if mpiSupport then "mpi" else "serial"} SHELL=$SHELL LMP_INC="${lammps_includes}" FFT_PATH=-DFFT_FFTW3 FFT_LIB=-lfftw3 JPG_LIB=-lpng
+  installPhase = ''
+    mkdir -p $out/bin $out/include $out/lib
 
-    mkdir -p $out/bin
     cp -v lmp_* $out/bin/
-
-    mkdir -p $out/include
     cp -v *.h $out/include/
-
-    mkdir -p $out/lib
     cp -v liblammps* $out/lib/
   '';
 
-  meta = {
+  meta = with stdenv.lib; {
     description = "Classical Molecular Dynamics simulation code";
     longDescription = ''
       LAMMPS is a classical molecular dynamics simulation code designed to
@@ -67,8 +60,8 @@ stdenv.mkDerivation rec {
       under the terms of the GNU Public License (GPL).
       '';
     homepage = http://lammps.sandia.gov;
-    license = stdenv.lib.licenses.gpl2;
-    platforms = stdenv.lib.platforms.linux;
-    maintainers = with lib.maintainers; [ costrouc ];
+    license = licenses.gpl2;
+    platforms = platforms.linux;
+    maintainers = [ maintainers.costrouc ];
   };
 }
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 661bf5086c02..ec37c90851d2 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -21146,8 +21146,7 @@ with pkgs;
     fftw = fftw;
   };
 
-  lammps-mpi = appendToName "mpi" (lammps.override {
-    mpiSupport = true;
+  lammps-mpi = lowPrio (lammps.override {
     mpi = openmpi;
   });
 

From 16f67637ba6a27cb61e2f334afc6050114073369 Mon Sep 17 00:00:00 2001
From: rnhmjoj <rnhmjoj@inventati.org>
Date: Mon, 8 Oct 2018 23:24:36 +0200
Subject: [PATCH 0013/1129] nixos/syncthing: move configuration to condigDir

fixes #47513 following the upstream recommended settings:
https://github.com/syncthing/syncthing/issues/3434#issuecomment-235401876
---
 nixos/doc/manual/release-notes/rl-1903.xml      | 10 ++++++++++
 nixos/modules/services/networking/syncthing.nix | 14 +++++++++++++-
 2 files changed, 23 insertions(+), 1 deletion(-)

diff --git a/nixos/doc/manual/release-notes/rl-1903.xml b/nixos/doc/manual/release-notes/rl-1903.xml
index 163819194ecf..29520a0188db 100644
--- a/nixos/doc/manual/release-notes/rl-1903.xml
+++ b/nixos/doc/manual/release-notes/rl-1903.xml
@@ -97,6 +97,16 @@
        start org.nixos.nix-daemon</command>.
       </para>
      </listitem>
+     <listitem>
+      <para>
+        The Syncthing state and configuration data has been moved from
+        <varname>services.syncthing.dataDir</varname> to the newly defined
+        <varname>services.syncthing.configDir</varname>, which default to
+        <literal>/var/lib/syncthing/.config/syncthing</literal>.
+        This change makes possible to share synced directories using ACLs
+        without Syncthing resetting the permission on every start.
+      </para>
+     </listitem>
     </itemizedlist>
    </listitem>
    <listitem>
diff --git a/nixos/modules/services/networking/syncthing.nix b/nixos/modules/services/networking/syncthing.nix
index fd31b2a67687..b2ef1885a955 100644
--- a/nixos/modules/services/networking/syncthing.nix
+++ b/nixos/modules/services/networking/syncthing.nix
@@ -62,9 +62,21 @@ in {
       dataDir = mkOption {
         type = types.path;
         default = "/var/lib/syncthing";
+        description = ''
+          Path where synced directories will exist.
+        '';
+      };
+
+      configDir = mkOption {
+        type = types.path;
         description = ''
           Path where the settings and keys will exist.
         '';
+        default =
+          let
+            nixos = config.system.stateVersion;
+            cond  = versionAtLeast nixos "19.03";
+          in cfg.dataDir + (optionalString cond "/.config/syncthing");
       };
 
       openDefaultPorts = mkOption {
@@ -144,7 +156,7 @@ in {
             ${cfg.package}/bin/syncthing \
               -no-browser \
               -gui-address=${cfg.guiAddress} \
-              -home=${cfg.dataDir}
+              -home=${cfg.configDir}
           '';
         };
       };

From adf826119217c23dc4c52c8da892d30df54b02ad Mon Sep 17 00:00:00 2001
From: Aneesh Agrawal <aneeshusa@gmail.com>
Date: Sun, 14 May 2017 23:32:45 -0400
Subject: [PATCH 0014/1129] nixos/salt-minion: Remove trailing whitespace

---
 nixos/modules/services/admin/salt/minion.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/nixos/modules/services/admin/salt/minion.nix b/nixos/modules/services/admin/salt/minion.nix
index 9ecefb32cfa8..be2c5e2f83d5 100644
--- a/nixos/modules/services/admin/salt/minion.nix
+++ b/nixos/modules/services/admin/salt/minion.nix
@@ -28,8 +28,8 @@ in
         default = {};
         description = ''
           Salt minion configuration as Nix attribute set.
-          See <link xlink:href="https://docs.saltstack.com/en/latest/ref/configuration/minion.html"/>                                                                                                 
-          for details.          
+          See <link xlink:href="https://docs.saltstack.com/en/latest/ref/configuration/minion.html"/>
+          for details.
         '';
       };
     };

From 37c9915340357226d2c9090425e9566feb7bb159 Mon Sep 17 00:00:00 2001
From: Aneesh Agrawal <aneeshusa@gmail.com>
Date: Sun, 14 May 2017 23:29:32 -0400
Subject: [PATCH 0015/1129] nixos/salt-minion: Fix salt-call without `-c`

---
 nixos/modules/services/admin/salt/minion.nix | 14 +++++++++++---
 1 file changed, 11 insertions(+), 3 deletions(-)

diff --git a/nixos/modules/services/admin/salt/minion.nix b/nixos/modules/services/admin/salt/minion.nix
index be2c5e2f83d5..254ff7bb899a 100644
--- a/nixos/modules/services/admin/salt/minion.nix
+++ b/nixos/modules/services/admin/salt/minion.nix
@@ -15,7 +15,6 @@ let
     # Default is in /etc/salt/pki/minion
     pki_dir = "/var/lib/salt/pki/minion";
   } cfg.configuration;
-  configDir = pkgs.writeTextDir "minion" (builtins.toJSON fullConfig);
 
 in
 
@@ -36,7 +35,16 @@ in
   };
 
   config = mkIf cfg.enable {
-    environment.systemPackages = with pkgs; [ salt ];
+    environment = {
+      # Set this up in /etc/salt/minion so `salt-call`, etc. work.
+      # The alternatives are
+      # - passing --config-dir to all salt commands, not just the minion unit,
+      # - setting aglobal environment variable.
+      etc."salt/minion".source = pkgs.writeText "minion" (
+        builtins.toJSON fullConfig
+      );
+      systemPackages = with pkgs; [ salt ];
+    };
     systemd.services.salt-minion = {
       description = "Salt Minion";
       wantedBy = [ "multi-user.target" ];
@@ -45,7 +53,7 @@ in
         utillinux
       ];
       serviceConfig = {
-        ExecStart = "${pkgs.salt}/bin/salt-minion --config-dir=${configDir}";
+        ExecStart = "${pkgs.salt}/bin/salt-minion";
         LimitNOFILE = 8192;
         Type = "notify";
         NotifyAccess = "all";

From a962d538068cdf00025e73181d17572492f68008 Mon Sep 17 00:00:00 2001
From: Aneesh Agrawal <aneeshusa@gmail.com>
Date: Tue, 18 Sep 2018 09:30:22 -0700
Subject: [PATCH 0016/1129] salt: Restart on config changes

---
 nixos/modules/services/admin/salt/master.nix | 3 +++
 nixos/modules/services/admin/salt/minion.nix | 3 +++
 2 files changed, 6 insertions(+)

diff --git a/nixos/modules/services/admin/salt/master.nix b/nixos/modules/services/admin/salt/master.nix
index 165580b97837..c6b1b0cc0bd8 100644
--- a/nixos/modules/services/admin/salt/master.nix
+++ b/nixos/modules/services/admin/salt/master.nix
@@ -53,6 +53,9 @@ in
         Type = "notify";
         NotifyAccess = "all";
       };
+      restartTriggers = [
+        config.environment.etc."salt/master".source
+      ];
     };
   };
 
diff --git a/nixos/modules/services/admin/salt/minion.nix b/nixos/modules/services/admin/salt/minion.nix
index 254ff7bb899a..c8fa9461a209 100644
--- a/nixos/modules/services/admin/salt/minion.nix
+++ b/nixos/modules/services/admin/salt/minion.nix
@@ -58,6 +58,9 @@ in
         Type = "notify";
         NotifyAccess = "all";
       };
+      restartTriggers = [
+        config.environment.etc."salt/minion".source
+      ];
     };
   };
 }

From 51e511130a6532bf25b1f3ad2f2d5cce78a578ac Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Tue, 16 Oct 2018 10:42:45 -0500
Subject: [PATCH 0017/1129] z3: 4.7.1 -> 4.8.1

---
 pkgs/applications/science/logic/z3/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/science/logic/z3/default.nix b/pkgs/applications/science/logic/z3/default.nix
index 1cbe914779e6..f7d67d82cbc8 100644
--- a/pkgs/applications/science/logic/z3/default.nix
+++ b/pkgs/applications/science/logic/z3/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "z3-${version}";
-  version = "4.7.1";
+  version = "4.8.1";
 
   src = fetchFromGitHub {
     owner  = "Z3Prover";
     repo   = "z3";
-    rev    = "3b1b82bef05a1b5fd69ece79c80a95fb6d72a990";
-    sha256 = "1s850r6qifwl83zzgvrb5l0jigvmymzpv18ph71hg2bcpk7kjw3d";
+    rev    = name;
+    sha256 = "1vr57bwx40sd5riijyrhy70i2wnv9xrdihf6y5zdz56yq88rl48f";
   };
 
   buildInputs = [ python fixDarwinDylibNames ];

From 161c0765ad0e40408aeef07c2db896d185e66522 Mon Sep 17 00:00:00 2001
From: Daniel Rutz <info@danielrutz.com>
Date: Thu, 18 Oct 2018 23:39:13 +0200
Subject: [PATCH 0018/1129] Add type port as an alias to u16

---
 lib/types.nix | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/lib/types.nix b/lib/types.nix
index ca6794e274c3..d1ece2402ad7 100644
--- a/lib/types.nix
+++ b/lib/types.nix
@@ -169,6 +169,9 @@ rec {
         # s32 = sign 32 4294967296;
       };
 
+    # Alias of u16 for a port number
+    port = ints.u16;
+
     float = mkOptionType rec {
         name = "float";
         description = "floating point number";

From c98a7bf8f284f278da1d7af23705ba232125f507 Mon Sep 17 00:00:00 2001
From: Daniel Rutz <info@danielrutz.com>
Date: Thu, 18 Oct 2018 23:42:20 +0200
Subject: [PATCH 0019/1129] nixos/sshd: Use port type instead of int

This change leads to an additional check of the port number at build time, making invalid port values impossible.
---
 nixos/modules/services/networking/ssh/sshd.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nixos/modules/services/networking/ssh/sshd.nix b/nixos/modules/services/networking/ssh/sshd.nix
index c16fbe8a52fa..5fab79f1b3d7 100644
--- a/nixos/modules/services/networking/ssh/sshd.nix
+++ b/nixos/modules/services/networking/ssh/sshd.nix
@@ -130,7 +130,7 @@ in
       };
 
       ports = mkOption {
-        type = types.listOf types.int;
+        type = types.listOf types.port;
         default = [22];
         description = ''
           Specifies on which ports the SSH daemon listens.

From 2ebc3034d3cc9d98478074a9d1d2f1ab6b2658fb Mon Sep 17 00:00:00 2001
From: Will Fancher <elvishjerricco@gmail.com>
Date: Fri, 19 Oct 2018 04:27:12 -0400
Subject: [PATCH 0020/1129] haskellPackages.cabal-helper: Jailbreak restrictive
 bounds. [Fixes #45515]

---
 pkgs/development/haskell-modules/configuration-common.nix | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix
index e05f19609ea3..f792332ded3f 100644
--- a/pkgs/development/haskell-modules/configuration-common.nix
+++ b/pkgs/development/haskell-modules/configuration-common.nix
@@ -1159,4 +1159,7 @@ self: super: {
   # https://github.com/danfran/cabal-macosx/issues/13
   cabal-macosx = dontCheck super.cabal-macosx;
 
+  # https://github.com/DanielG/cabal-helper/issues/59
+  cabal-helper = doJailbreak super.cabal-helper;
+
 } // import ./configuration-tensorflow.nix {inherit pkgs haskellLib;} self super

From 0885a651694853e2a125ecda5a37c3fe5e1ea005 Mon Sep 17 00:00:00 2001
From: Daniel Rutz <info@danielrutz.com>
Date: Fri, 19 Oct 2018 12:20:48 +0200
Subject: [PATCH 0021/1129] nixos/doc: Add documentation for types.port type

---
 nixos/doc/manual/development/option-types.xml | 13 ++++++++++++-
 1 file changed, 12 insertions(+), 1 deletion(-)

diff --git a/nixos/doc/manual/development/option-types.xml b/nixos/doc/manual/development/option-types.xml
index e6c9eae11a72..d993e47bc914 100644
--- a/nixos/doc/manual/development/option-types.xml
+++ b/nixos/doc/manual/development/option-types.xml
@@ -106,7 +106,7 @@
      </para>
     </listitem>
    </varlistentry>
-   <varlistentry>
+   <varlistentry xml:id='types.ints.ux'>
     <term>
      <varname>types.ints.{u8, u16, u32}</varname>
     </term>
@@ -131,6 +131,17 @@
      </para>
     </listitem>
    </varlistentry>
+   <varlistentry>
+    <term>
+     <varname>types.port</varname>
+    </term>
+    <listitem>
+     <para>
+      A port number. This type is an alias to
+      <link linkend='types.ints.ux'><varname>types.ints.u16</varname></link>.
+     </para>
+    </listitem>
+   </varlistentry>
   </variablelist>
 
   <para>

From d87a5c872218d0f179ae13319079bfea918f7d7f Mon Sep 17 00:00:00 2001
From: Amar1729 <amar.paul16@gmail.com>
Date: Sat, 20 Oct 2018 01:52:11 -0400
Subject: [PATCH 0022/1129] argp-standalone: init at 1.3

---
 .../libraries/argp-standalone/default.nix     | 41 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 2 files changed, 43 insertions(+)
 create mode 100644 pkgs/development/libraries/argp-standalone/default.nix

diff --git a/pkgs/development/libraries/argp-standalone/default.nix b/pkgs/development/libraries/argp-standalone/default.nix
new file mode 100644
index 000000000000..f14c77f666bd
--- /dev/null
+++ b/pkgs/development/libraries/argp-standalone/default.nix
@@ -0,0 +1,41 @@
+{ stdenv, fetchurl, fetchpatch }:
+
+stdenv.mkDerivation rec {
+  name = "argp-standalone-1.3";
+
+  src = fetchurl {
+    url = "https://www.lysator.liu.se/~nisse/misc/argp-standalone-1.3.tar.gz";
+    sha256 = "dec79694da1319acd2238ce95df57f3680fea2482096e483323fddf3d818d8be";
+  };
+
+  patches = [
+    (if stdenv.hostPlatform.isDarwin then
+    fetchpatch {
+      name = "patch-argp-fmtstream.h";
+      url = "https://raw.githubusercontent.com/Homebrew/formula-patches/b5f0ad3/argp-standalone/patch-argp-fmtstream.h";
+      sha256 = "5656273f622fdb7ca7cf1f98c0c9529bed461d23718bc2a6a85986e4f8ed1cb8";
+    }
+    else null)
+  ];
+
+  patchFlags = "-p0";
+
+  postInstall = 
+    ''
+      mkdir -p $out/lib $out/include
+      cp libargp.a $out/lib
+      cp argp.h $out/include
+    '';
+
+  doCheck = true;
+
+  enableParallelBuilding = true;
+
+  meta = with stdenv.lib; {
+    homepage = "https://www.lysator.liu.se/~nisse/misc/";
+    description = "Standalone version of arguments parsing functions from GLIBC";
+    platforms = platforms.darwin;
+    maintainers = with maintainers; [ amar1729 ];
+    license = stdenv.lib.licenses.gpl2;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 010532e7b5b7..293fe2838334 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -9047,6 +9047,8 @@ with pkgs;
   arb = callPackage ../development/libraries/arb {};
   arb-git = callPackage ../development/libraries/arb/git.nix {};
 
+  argp-standalone = callPackage ../development/libraries/argp-standalone {};
+
   armadillo = callPackage ../development/libraries/armadillo {};
 
   arrow-cpp = callPackage ../development/libraries/arrow-cpp {};

From 8e8283ae104a637401a60d7f1b499d898c38c2e6 Mon Sep 17 00:00:00 2001
From: Amar1729 <amar.paul16@gmail.com>
Date: Sat, 20 Oct 2018 02:32:27 -0400
Subject: [PATCH 0023/1129] maintainers: add amar1729

---
 maintainers/maintainer-list.nix | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index e60280f30ebe..c439d0440a8d 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -206,6 +206,11 @@
     github = "alunduil";
     name = "Alex Brandt";
   };
+  amar1729 = {
+    email = "amar.paul16@gmail.com";
+    github = "amar1729";
+    name = "Amar Paul";
+  };
   ambrop72 = {
     email = "ambrop7@gmail.com";
     github = "ambrop72";

From 85526bce87def0cf74d23065690971e335987f7b Mon Sep 17 00:00:00 2001
From: Kier Davis <kierdavis@gmail.com>
Date: Sun, 6 May 2018 18:58:51 +0100
Subject: [PATCH 0024/1129] ckb-next: 0.2.9 -> 0.3.2

In this update:

* binaries `ckb` and `ckb-daemon` are renamed to `ckb-next` and `ckb-next-daemon`
* build system changed from qmake to cmake
* the directory searched for animation plugins no longer needs to be patched, as a result of the build system change
* modprobe patch has been bumped, since the source repository layout has changed
* the cmake scripts are quite FHS-centric and require patching to fix install locations
---
 nixos/modules/hardware/ckb.nix                |  2 +-
 .../misc/ckb/ckb-animations-location.patch    | 12 -----
 pkgs/tools/misc/ckb/ckb-modprobe.patch        | 35 ++++++++++-----
 pkgs/tools/misc/ckb/default.nix               | 22 +++------
 pkgs/tools/misc/ckb/install-dirs.patch        | 32 +++++++++++++
 pkgs/tools/misc/ckb/systemd-service.patch     | 45 +++++++++++++++++++
 6 files changed, 108 insertions(+), 40 deletions(-)
 delete mode 100644 pkgs/tools/misc/ckb/ckb-animations-location.patch
 create mode 100644 pkgs/tools/misc/ckb/install-dirs.patch
 create mode 100644 pkgs/tools/misc/ckb/systemd-service.patch

diff --git a/nixos/modules/hardware/ckb.nix b/nixos/modules/hardware/ckb.nix
index 8429572a8822..a8e697f79391 100644
--- a/nixos/modules/hardware/ckb.nix
+++ b/nixos/modules/hardware/ckb.nix
@@ -26,7 +26,7 @@ in
       systemd.services.ckb = {
         description = "Corsair Keyboard Daemon";
         wantedBy = ["multi-user.target"];
-        script = "${cfg.package}/bin/ckb-daemon";
+        script = "${cfg.package}/bin/ckb-next-daemon";
         serviceConfig = {
           Restart = "always";
           StandardOutput = "syslog";
diff --git a/pkgs/tools/misc/ckb/ckb-animations-location.patch b/pkgs/tools/misc/ckb/ckb-animations-location.patch
deleted file mode 100644
index 8e53685e76a6..000000000000
--- a/pkgs/tools/misc/ckb/ckb-animations-location.patch
+++ /dev/null
@@ -1,12 +0,0 @@
-diff --git a/src/ckb/animscript.cpp b/src/ckb/animscript.cpp
-index f49a64c..d7a3459 100644
---- a/src/ckb/animscript.cpp
-+++ b/src/ckb/animscript.cpp
-@@ -30,7 +30,7 @@ QString AnimScript::path(){
- #ifdef __APPLE__
-     return QDir(QApplication::applicationDirPath() + "/../Resources").absoluteFilePath("ckb-animations");
- #else
--    return QDir("/usr/lib").absoluteFilePath("ckb-animations");
-+    return QDir(QApplication::applicationDirPath() + "/../libexec").absoluteFilePath("ckb-animations");
- #endif
- }
diff --git a/pkgs/tools/misc/ckb/ckb-modprobe.patch b/pkgs/tools/misc/ckb/ckb-modprobe.patch
index 8024151159cf..f2156fc3b23b 100644
--- a/pkgs/tools/misc/ckb/ckb-modprobe.patch
+++ b/pkgs/tools/misc/ckb/ckb-modprobe.patch
@@ -1,13 +1,26 @@
-diff --git a/src/ckb-daemon/usb_linux.c b/src/ckb-daemon/usb_linux.c
-index 8673f86..4714305 100644
---- a/src/ckb-daemon/usb_linux.c
-+++ b/src/ckb-daemon/usb_linux.c
-@@ -440,7 +440,7 @@ static void udev_enum(){
- 
- int usbmain(){
+diff --git a/src/daemon/input_linux.c b/src/daemon/input_linux.c
+index 1cedb07..8e0b24b 100644
+--- a/src/daemon/input_linux.c
++++ b/src/daemon/input_linux.c
+@@ -58,7 +58,7 @@ int os_inputopen(usbdevice* kb){
+     /// First check whether the uinput module is loaded by the kernel.
+     ///
      // Load the uinput module (if it's not loaded already)
--    if(system("modprobe uinput") != 0)
-+    if(system("@kmod@/bin/modprobe uinput") != 0)
-         ckb_warn("Failed to load uinput module\n");
+-    if(system("modprobe uinput") != 0) {
++    if(system("@kmod@/bin/modprobe uinput") != 0) {
+         ckb_fatal("Failed to load uinput module\n");
+         return 1;
+     }
+diff --git a/src/gui/mainwindow.cpp b/src/gui/mainwindow.cpp
+index 3601146..3f2f78f 100644
+--- a/src/gui/mainwindow.cpp
++++ b/src/gui/mainwindow.cpp
+@@ -251,7 +251,7 @@ void MainWindow::updateVersion(){
+             daemonWarning.append(tr("<br /><b>Warning:</b> System Extension by \"Fumihiko Takayama\" is not allowed in Security & Privacy. Please allow it and then unplug and replug your devices."));
+ #elif defined(Q_OS_LINUX)
+             QProcess modprobe;
+-            modprobe.start("modprobe", QStringList("uinput"));
++            modprobe.start("@kmod@/bin/modprobe", QStringList("uinput"));
  
-     // Create the udev object
+             if(!modprobe.waitForFinished())
+                 qDebug() << "Modprobe error";
diff --git a/pkgs/tools/misc/ckb/default.nix b/pkgs/tools/misc/ckb/default.nix
index 57be1b89e469..15aa4d3c52dc 100644
--- a/pkgs/tools/misc/ckb/default.nix
+++ b/pkgs/tools/misc/ckb/default.nix
@@ -1,15 +1,15 @@
 { stdenv, fetchFromGitHub, substituteAll, udev
-, pkgconfig, qtbase, qmake, zlib, kmod }:
+, pkgconfig, qtbase, cmake, zlib, kmod }:
 
 stdenv.mkDerivation rec {
-  version = "0.2.9";
+  version = "0.3.2";
   name = "ckb-next-${version}";
 
   src = fetchFromGitHub {
     owner = "ckb-next";
     repo = "ckb-next";
     rev = "v${version}";
-    sha256 = "0hl41znyhp3k5l9rcgz0gig36gsg95ivrs1dyngv45q9jkr6fchm";
+    sha256 = "0ri5n7r1vhsgk6s64abvqcdrs5fmlwprw0rxiwfy0j8a9qcic1dr";
   };
 
   buildInputs = [
@@ -20,11 +20,12 @@ stdenv.mkDerivation rec {
 
   nativeBuildInputs = [
     pkgconfig
-    qmake
+    cmake
   ];
 
   patches = [
-    ./ckb-animations-location.patch
+    ./install-dirs.patch
+    ./systemd-service.patch
     (substituteAll {
       name = "ckb-modprobe.patch";
       src = ./ckb-modprobe.patch;
@@ -32,17 +33,6 @@ stdenv.mkDerivation rec {
     })
   ];
 
-  doCheck = false;
-
-  installPhase = ''
-    runHook preInstall
-
-    install -D --mode 0755 --target-directory $out/bin bin/ckb-daemon bin/ckb
-    install -D --mode 0755 --target-directory $out/libexec/ckb-animations bin/ckb-animations/*
-
-    runHook postInstall
-  '';
-
   meta = with stdenv.lib; {
     description = "Driver and configuration tool for Corsair keyboards and mice";
     homepage = https://github.com/ckb-next/ckb-next;
diff --git a/pkgs/tools/misc/ckb/install-dirs.patch b/pkgs/tools/misc/ckb/install-dirs.patch
new file mode 100644
index 000000000000..5545292a65ee
--- /dev/null
+++ b/pkgs/tools/misc/ckb/install-dirs.patch
@@ -0,0 +1,32 @@
+diff --git a/src/daemon/CMakeLists.txt b/src/daemon/CMakeLists.txt
+index 09056a7..1bb4595 100644
+--- a/src/daemon/CMakeLists.txt
++++ b/src/daemon/CMakeLists.txt
+@@ -456,7 +456,7 @@ endif ()
+ if (LINUX)
+   install(
+     FILES "${CMAKE_SOURCE_DIR}/linux/udev/99-ckb-daemon.rules"
+-    DESTINATION "/etc/udev/rules.d"
++    DESTINATION "${CMAKE_INSTALL_PREFIX}/lib/udev/rules.d"
+     PERMISSIONS
+     OWNER_READ OWNER_WRITE
+     GROUP_READ
+diff --git a/src/libs/ckb-next/CMakeLists.txt b/src/libs/ckb-next/CMakeLists.txt
+index ecc591c..35de563 100644
+--- a/src/libs/ckb-next/CMakeLists.txt
++++ b/src/libs/ckb-next/CMakeLists.txt
+@@ -75,12 +75,12 @@ if(NOT MACOS)
+         NAMESPACE
+           ${CMAKE_PROJECT_NAME}::
+         DESTINATION
+-          "/usr/lib/cmake/${CMAKE_PROJECT_NAME}/${PROJECT_NAME}")
++          "${CMAKE_INSTALL_PREFIX}/lib/cmake/${CMAKE_PROJECT_NAME}/${PROJECT_NAME}")
+ 
+     install(
+         FILES
+           "cmake/${PROJECT_NAME}Config.cmake"
+           "${CMAKE_CURRENT_BINARY_DIR}/${PROJECT_NAME}/${PROJECT_NAME}ConfigVersion.cmake"
+         DESTINATION
+-          "/usr/lib/cmake/${CMAKE_PROJECT_NAME}/${PROJECT_NAME}")
++          "${CMAKE_INSTALL_PREFIX}/lib/cmake/${CMAKE_PROJECT_NAME}/${PROJECT_NAME}")
+ endif()
diff --git a/pkgs/tools/misc/ckb/systemd-service.patch b/pkgs/tools/misc/ckb/systemd-service.patch
new file mode 100644
index 000000000000..917bc09627f7
--- /dev/null
+++ b/pkgs/tools/misc/ckb/systemd-service.patch
@@ -0,0 +1,45 @@
+diff --git a/src/daemon/CMakeLists.txt b/src/daemon/CMakeLists.txt
+index 09056a7..72a7249 100644
+--- a/src/daemon/CMakeLists.txt
++++ b/src/daemon/CMakeLists.txt
+@@ -249,12 +249,7 @@ elseif (LINUX)
+     # but it is not enabled by default and systemd is used instead. (Ubuntu 15.04+)
+ 
+     # A way to check for upstart
+-    execute_process(
+-        COMMAND initctl --version
+-        OUTPUT_VARIABLE initctl_output
+-        OUTPUT_STRIP_TRAILING_WHITESPACE)
+-
+-    if ("${initctl_output}" MATCHES "upstart")
++    if (FALSE)
+         message(STATUS "upstart detected")
+         set(CKB_NEXT_INIT_SYSTEM "upstart" CACHE INTERNAL "")
+         set(DISALLOW_SYSVINIT TRUE)
+@@ -292,7 +287,7 @@ elseif (LINUX)
+     endif ()
+ 
+     # A way to check for systemd
+-    if (EXISTS "/run/systemd/system")
++    if (TRUE)
+         message(STATUS "systemd detected")
+         set(CKB_NEXT_INIT_SYSTEM "systemd" CACHE INTERNAL "")
+         set(DISALLOW_SYSVINIT TRUE)
+@@ -328,7 +323,7 @@ elseif (LINUX)
+     endif ()
+ 
+     # A way to check for OpenRC
+-    if (EXISTS "/run/openrc/softlevel")
++    if (FALSE)
+         message(STATUS "OpenRC detected")
+         set(CKB_NEXT_INIT_SYSTEM "OpenRC" CACHE INTERNAL "")
+         set(DISALLOW_SYSVINIT TRUE)
+@@ -419,7 +414,7 @@ if ("${CKB_NEXT_INIT_SYSTEM}" STREQUAL "launchd")
+ elseif ("${CKB_NEXT_INIT_SYSTEM}" STREQUAL "systemd")
+     install(
+         FILES "${CMAKE_CURRENT_BINARY_DIR}/service/ckb-next-daemon.service"
+-        DESTINATION "/usr/lib/systemd/system"
++        DESTINATION "${CMAKE_INSTALL_PREFIX}/lib/systemd/system"
+         PERMISSIONS
+         OWNER_READ OWNER_WRITE
+         GROUP_READ

From 8069b09d057489089257e4790ef5896761e3024c Mon Sep 17 00:00:00 2001
From: Kier Davis <kierdavis@gmail.com>
Date: Sun, 6 May 2018 19:23:20 +0100
Subject: [PATCH 0025/1129] ckb module: update systemd service parameters to
 match upstream

This changes the description and restart mode to the values present
in lib/systemd/system/ckb.service within the ckb package.
---
 nixos/modules/hardware/ckb.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/nixos/modules/hardware/ckb.nix b/nixos/modules/hardware/ckb.nix
index a8e697f79391..8c0cdbd24d47 100644
--- a/nixos/modules/hardware/ckb.nix
+++ b/nixos/modules/hardware/ckb.nix
@@ -24,11 +24,11 @@ in
       environment.systemPackages = [ cfg.package ];
 
       systemd.services.ckb = {
-        description = "Corsair Keyboard Daemon";
+        description = "Corsair Keyboards and Mice Daemon";
         wantedBy = ["multi-user.target"];
         script = "${cfg.package}/bin/ckb-next-daemon";
         serviceConfig = {
-          Restart = "always";
+          Restart = "on-failure";
           StandardOutput = "syslog";
         };
       };

From 81178785c95e130160ee25673bec10888f662acc Mon Sep 17 00:00:00 2001
From: Kier Davis <kierdavis@gmail.com>
Date: Sun, 6 May 2018 19:26:37 +0100
Subject: [PATCH 0026/1129] ckb, ckb module: rename to ckb-next

The upstream package has officially changed its name to ckb-next.
---
 nixos/doc/manual/release-notes/rl-1903.xml        |  7 +++++++
 nixos/modules/hardware/{ckb.nix => ckb-next.nix}  | 15 ++++++++++-----
 nixos/modules/module-list.nix                     |  2 +-
 .../misc/{ckb => ckb-next}/ckb-modprobe.patch     |  0
 pkgs/tools/misc/{ckb => ckb-next}/default.nix     |  0
 .../misc/{ckb => ckb-next}/install-dirs.patch     |  0
 .../misc/{ckb => ckb-next}/systemd-service.patch  |  0
 pkgs/top-level/aliases.nix                        |  1 +
 pkgs/top-level/all-packages.nix                   |  2 +-
 9 files changed, 20 insertions(+), 7 deletions(-)
 rename nixos/modules/hardware/{ckb.nix => ckb-next.nix} (66%)
 rename pkgs/tools/misc/{ckb => ckb-next}/ckb-modprobe.patch (100%)
 rename pkgs/tools/misc/{ckb => ckb-next}/default.nix (100%)
 rename pkgs/tools/misc/{ckb => ckb-next}/install-dirs.patch (100%)
 rename pkgs/tools/misc/{ckb => ckb-next}/systemd-service.patch (100%)

diff --git a/nixos/doc/manual/release-notes/rl-1903.xml b/nixos/doc/manual/release-notes/rl-1903.xml
index 839d75b53bd1..3cef0fb1c1d9 100644
--- a/nixos/doc/manual/release-notes/rl-1903.xml
+++ b/nixos/doc/manual/release-notes/rl-1903.xml
@@ -137,6 +137,13 @@
      make sure to update your configuration if you want to keep <literal>proglodyte-wasm</literal>
     </para>
    </listitem>
+   <listitem>
+    <para>
+     Package <literal>ckb</literal> is renamed to <literal>ckb-next</literal>,
+     and options <literal>hardware.ckb.*</literal> are renamed to
+     <literal>hardware.ckb-next.*</literal>.
+    </para>
+   </listitem>
   </itemizedlist>
  </section>
 
diff --git a/nixos/modules/hardware/ckb.nix b/nixos/modules/hardware/ckb-next.nix
similarity index 66%
rename from nixos/modules/hardware/ckb.nix
rename to nixos/modules/hardware/ckb-next.nix
index 8c0cdbd24d47..0316d7cf4119 100644
--- a/nixos/modules/hardware/ckb.nix
+++ b/nixos/modules/hardware/ckb-next.nix
@@ -3,17 +3,22 @@
 with lib;
 
 let
-  cfg = config.hardware.ckb;
+  cfg = config.hardware.ckb-next;
 
 in
   {
-    options.hardware.ckb = {
+    imports = [
+      (mkRenamedOptionModule ["hardware" "ckb" "enable"] ["hardware" "ckb-next" "enable"])
+      (mkRenamedOptionModule ["hardware" "ckb" "package"] ["hardware" "ckb-next" "package"])
+    ];
+
+    options.hardware.ckb-next = {
       enable = mkEnableOption "the Corsair keyboard/mouse driver";
 
       package = mkOption {
         type = types.package;
-        default = pkgs.ckb;
-        defaultText = "pkgs.ckb";
+        default = pkgs.ckb-next;
+        defaultText = "pkgs.ckb-next";
         description = ''
           The package implementing the Corsair keyboard/mouse driver.
         '';
@@ -23,7 +28,7 @@ in
     config = mkIf cfg.enable {
       environment.systemPackages = [ cfg.package ];
 
-      systemd.services.ckb = {
+      systemd.services.ckb-next = {
         description = "Corsair Keyboards and Mice Daemon";
         wantedBy = ["multi-user.target"];
         script = "${cfg.package}/bin/ckb-next-daemon";
diff --git a/nixos/modules/module-list.nix b/nixos/modules/module-list.nix
index fb6b4262568e..5158fcac492a 100644
--- a/nixos/modules/module-list.nix
+++ b/nixos/modules/module-list.nix
@@ -34,7 +34,7 @@
   ./config/zram.nix
   ./hardware/all-firmware.nix
   ./hardware/brightnessctl.nix
-  ./hardware/ckb.nix
+  ./hardware/ckb-next.nix
   ./hardware/cpu/amd-microcode.nix
   ./hardware/cpu/intel-microcode.nix
   ./hardware/digitalbitbox.nix
diff --git a/pkgs/tools/misc/ckb/ckb-modprobe.patch b/pkgs/tools/misc/ckb-next/ckb-modprobe.patch
similarity index 100%
rename from pkgs/tools/misc/ckb/ckb-modprobe.patch
rename to pkgs/tools/misc/ckb-next/ckb-modprobe.patch
diff --git a/pkgs/tools/misc/ckb/default.nix b/pkgs/tools/misc/ckb-next/default.nix
similarity index 100%
rename from pkgs/tools/misc/ckb/default.nix
rename to pkgs/tools/misc/ckb-next/default.nix
diff --git a/pkgs/tools/misc/ckb/install-dirs.patch b/pkgs/tools/misc/ckb-next/install-dirs.patch
similarity index 100%
rename from pkgs/tools/misc/ckb/install-dirs.patch
rename to pkgs/tools/misc/ckb-next/install-dirs.patch
diff --git a/pkgs/tools/misc/ckb/systemd-service.patch b/pkgs/tools/misc/ckb-next/systemd-service.patch
similarity index 100%
rename from pkgs/tools/misc/ckb/systemd-service.patch
rename to pkgs/tools/misc/ckb-next/systemd-service.patch
diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix
index a0f611dd9611..728fd6b71b83 100644
--- a/pkgs/top-level/aliases.nix
+++ b/pkgs/top-level/aliases.nix
@@ -59,6 +59,7 @@ mapAliases ({
   cantarell_fonts = cantarell-fonts; # added 2018-03-03
   checkbashism = checkbashisms; # added 2016-08-16
   cifs_utils = cifs-utils; # added 2016-08
+  ckb = ckb-next; # added 2018-10-21
   clangAnalyzer = clang-analyzer;  # added 2015-02-20
   clawsMail = claws-mail; # added 2016-04-29
   clutter_gtk = clutter-gtk; # added 2018-02-25
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index cfbc6687f9d1..0f3c36d00f02 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -1987,7 +1987,7 @@ with pkgs;
 
   checkbashisms = callPackage ../development/tools/misc/checkbashisms { };
 
-  ckb = libsForQt5.callPackage ../tools/misc/ckb { };
+  ckb-next = libsForQt5.callPackage ../tools/misc/ckb-next { };
 
   clamav = callPackage ../tools/security/clamav { };
 

From dfdaf39ec3b5995e85c3783eb878b60aed893b62 Mon Sep 17 00:00:00 2001
From: Kier Davis <kierdavis@gmail.com>
Date: Sun, 6 May 2018 19:47:58 +0100
Subject: [PATCH 0027/1129] ckb module: use exec when starting the daemon
 process

This avoids leaving the parent shell process (the one executing the
unit script) lying around.
---
 nixos/modules/hardware/ckb-next.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nixos/modules/hardware/ckb-next.nix b/nixos/modules/hardware/ckb-next.nix
index 0316d7cf4119..7c8e0f559587 100644
--- a/nixos/modules/hardware/ckb-next.nix
+++ b/nixos/modules/hardware/ckb-next.nix
@@ -31,7 +31,7 @@ in
       systemd.services.ckb-next = {
         description = "Corsair Keyboards and Mice Daemon";
         wantedBy = ["multi-user.target"];
-        script = "${cfg.package}/bin/ckb-next-daemon";
+        script = "exec ${cfg.package}/bin/ckb-next-daemon";
         serviceConfig = {
           Restart = "on-failure";
           StandardOutput = "syslog";

From 7a0d8496537a8b31a0697a8d08fa042837fb467c Mon Sep 17 00:00:00 2001
From: Kier Davis <kierdavis@gmail.com>
Date: Sun, 6 May 2018 19:49:51 +0100
Subject: [PATCH 0028/1129] ckb-next: rename ckb-modprobe.patch to
 modprobe.patch

This keeps the naming consistent with the other two patches in
this directory.
---
 pkgs/tools/misc/ckb-next/default.nix                          | 4 ++--
 .../misc/ckb-next/{ckb-modprobe.patch => modprobe.patch}      | 0
 2 files changed, 2 insertions(+), 2 deletions(-)
 rename pkgs/tools/misc/ckb-next/{ckb-modprobe.patch => modprobe.patch} (100%)

diff --git a/pkgs/tools/misc/ckb-next/default.nix b/pkgs/tools/misc/ckb-next/default.nix
index 15aa4d3c52dc..fdb0f008a6cb 100644
--- a/pkgs/tools/misc/ckb-next/default.nix
+++ b/pkgs/tools/misc/ckb-next/default.nix
@@ -27,8 +27,8 @@ stdenv.mkDerivation rec {
     ./install-dirs.patch
     ./systemd-service.patch
     (substituteAll {
-      name = "ckb-modprobe.patch";
-      src = ./ckb-modprobe.patch;
+      name = "ckb-next-modprobe.patch";
+      src = ./modprobe.patch;
       inherit kmod;
     })
   ];
diff --git a/pkgs/tools/misc/ckb-next/ckb-modprobe.patch b/pkgs/tools/misc/ckb-next/modprobe.patch
similarity index 100%
rename from pkgs/tools/misc/ckb-next/ckb-modprobe.patch
rename to pkgs/tools/misc/ckb-next/modprobe.patch

From 9f72791516f0f4a3f9ef5a24259f7e4a06896ec5 Mon Sep 17 00:00:00 2001
From: Arian van Putten <aeroboy94@gmail.com>
Date: Sun, 21 Oct 2018 11:40:20 +0200
Subject: [PATCH 0029/1129] nixos/containers: Introduce several tweaks to
 systemd-nspawn from upstream systemd

* Lets container@.service  be activated by machines.target instead of
  multi-user.target

  According to the systemd manpages, all containers that are registered
  by machinectl, should be inside machines.target for easy stopping
  and starting container units altogether

* make sure container@.service and container.slice instances are
  actually located in machine.slice

  https://plus.google.com/112206451048767236518/posts/SYAueyXHeEX
  See original commit: https://github.com/NixOS/systemd/commit/45d383a3b8

* Enable Cgroup delegation for nixos-containers

  Delegate=yes should be set for container scopes where a systemd instance
  inside the container shall manage the hierarchies below its own cgroup
  and have access to all controllers.

  This is equivalent to enabling all accounting options on the systemd
  process inside the system container.  This means that systemd inside
  the container is responsible for managing Cgroup resources for
  unit files that enable accounting options inside.  Without this
  option, units that make use of cgroup features within system
  containers might misbehave

  See original commit: https://github.com/NixOS/systemd/commit/a931ad47a8

  from the manpage:
    Turns on delegation of further resource control partitioning to
    processes of the unit. Units where this is enabled may create and
    manage their own private subhierarchy of control groups below the
    control group of the unit itself. For unprivileged services (i.e.
    those using the User= setting) the unit's control group will be made
    accessible to the relevant user. When enabled the service manager
    will refrain from manipulating control groups or moving processes
    below the unit's control group, so that a clear concept of ownership
    is established: the control group tree above the unit's control
    group (i.e. towards the root control group) is owned and managed by
    the service manager of the host, while the control group tree below
    the unit's control group is owned and managed by the unit itself.
    Takes either a boolean argument or a list of control group
    controller names. If true, delegation is turned on, and all
    supported controllers are enabled for the unit, making them
    available to the unit's processes for management. If false,
    delegation is turned off entirely (and no additional controllers are
    enabled). If set to a list of controllers, delegation is turned on,
    and the specified controllers are enabled for the unit. Note that
    additional controllers than the ones specified might be made
    available as well, depending on configuration of the containing
    slice unit or other units contained in it. Note that assigning the
    empty string will enable delegation, but reset the list of
    controllers, all assignments prior to this will have no effect.
    Defaults to false.

    Note that controller delegation to less privileged code is only safe
    on the unified control group hierarchy. Accordingly, access to the
    specified controllers will not be granted to unprivileged services
    on the legacy hierarchy, even when requested.

    The following controller names may be specified: cpu, cpuacct, io,
    blkio, memory, devices, pids. Not all of these controllers are
    available on all kernels however, and some are specific to the
    unified hierarchy while others are specific to the legacy hierarchy.
    Also note that the kernel might support further controllers, which
    aren't covered here yet as delegation is either not supported at all
    for them or not defined cleanly.
---
 nixos/modules/system/boot/systemd-nspawn.nix | 1 +
 nixos/modules/virtualisation/containers.nix  | 7 ++++++-
 2 files changed, 7 insertions(+), 1 deletion(-)

diff --git a/nixos/modules/system/boot/systemd-nspawn.nix b/nixos/modules/system/boot/systemd-nspawn.nix
index f4fa09694537..4f538ccdbbe1 100644
--- a/nixos/modules/system/boot/systemd-nspawn.nix
+++ b/nixos/modules/system/boot/systemd-nspawn.nix
@@ -112,6 +112,7 @@ in {
 
       environment.etc."systemd/nspawn".source = generateUnits "nspawn" units [] [];
 
+      systemd.targets."multi-user".wants = [ "machines.target "];
   };
 
 }
diff --git a/nixos/modules/virtualisation/containers.nix b/nixos/modules/virtualisation/containers.nix
index 8fe59badd335..9d1359322d15 100644
--- a/nixos/modules/virtualisation/containers.nix
+++ b/nixos/modules/virtualisation/containers.nix
@@ -243,6 +243,9 @@ let
 
     Restart = "on-failure";
 
+    Slice = "machine.slice";
+    Delegate = true;
+
     # Hack: we don't want to kill systemd-nspawn, since we call
     # "machinectl poweroff" in preStop to shut down the
     # container cleanly. But systemd requires sending a signal
@@ -657,6 +660,8 @@ in
       serviceConfig = serviceDirectives dummyConfig;
     };
   in {
+    systemd.targets."multi-user".wants = [ "machines.target" ];
+
     systemd.services = listToAttrs (filter (x: x.value != null) (
       # The generic container template used by imperative containers
       [{ name = "container@"; value = unit; }]
@@ -680,7 +685,7 @@ in
           } // (
           if config.autoStart then
             {
-              wantedBy = [ "multi-user.target" ];
+              wantedBy = [ "machines.target" ];
               wants = [ "network.target" ];
               after = [ "network.target" ];
               restartTriggers = [ config.path ];

From c3fe5bd0885f4bc1e2b7249c9a4351cb2efc756d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Sun, 21 Oct 2018 18:42:02 -0300
Subject: [PATCH 0030/1129] dde-daemon: init at 3.2.24.7

---
 pkgs/desktops/deepin/dde-daemon/default.nix |  90 +++++++++++++++++
 pkgs/desktops/deepin/dde-daemon/deps.nix    | 102 ++++++++++++++++++++
 pkgs/desktops/deepin/default.nix            |   1 +
 3 files changed, 193 insertions(+)
 create mode 100644 pkgs/desktops/deepin/dde-daemon/default.nix
 create mode 100644 pkgs/desktops/deepin/dde-daemon/deps.nix

diff --git a/pkgs/desktops/deepin/dde-daemon/default.nix b/pkgs/desktops/deepin/dde-daemon/default.nix
new file mode 100644
index 000000000000..fe2c5f8f55a1
--- /dev/null
+++ b/pkgs/desktops/deepin/dde-daemon/default.nix
@@ -0,0 +1,90 @@
+{ stdenv, buildGoPackage, fetchFromGitHub, fetchpatch, pkgconfig,
+  dbus-factory, go-dbus-factory, go-gir-generator, go-lib,
+  deepin-gettext-tools, dde-api, alsaLib, glib, gtk3, libinput, libnl,
+  librsvg, linux-pam, networkmanager, pulseaudio, xorg, gnome3,
+  python3Packages, hicolor-icon-theme, go }:
+
+buildGoPackage rec {
+  name = "${pname}-${version}";
+  pname = "dde-daemon";
+  version = "3.2.24.7";
+
+  goPackagePath = "pkg.deepin.io/dde/daemon";
+
+  src = fetchFromGitHub {
+    owner = "linuxdeepin";
+    repo = pname;
+    rev = version;
+    sha256 = "17dvhqrw0dqy3d0wd9ailb18y2rg7575g3ffy0d5rg9m3y65y1y6";
+  };
+
+  patches = [
+    # https://github.com/linuxdeepin/dde-daemon/issues/51
+    (fetchpatch {
+      name = "dde-daemon_3.2.3.patch";
+      url = https://github.com/jouyouyun/tap-gesture-patches/raw/master/patches/dde-daemon_3.2.3.patch;
+      sha256 = "0a3xb15czpfl2vajpf7ycw37vr7fbw2png1a67mvjjkgx7d1k7dg";
+    })
+  ];
+
+  goDeps = ./deps.nix;
+
+  outputs = [ "out" ];
+
+  nativeBuildInputs = [
+    pkgconfig
+    dbus-factory
+    go-dbus-factory
+    go-gir-generator
+    go-lib
+    deepin-gettext-tools
+    dde-api
+    linux-pam
+    networkmanager
+    networkmanager.dev
+    python3Packages.python
+  ];
+
+  buildInputs = [
+    alsaLib
+    glib
+    gnome3.libgudev
+    gtk3
+    hicolor-icon-theme
+    libinput
+    libnl
+    librsvg
+    pulseaudio
+  ];
+
+  postPatch = ''
+    patchShebangs .
+
+    sed -i network/nm_generator/Makefile -e 's,/usr/share/gir-1.0/NM-1.0.gir,${networkmanager.dev}/share/gir-1.0/NM-1.0.gir,'
+
+    sed -i -e "s|{DESTDIR}/etc|{DESTDIR}$out/etc|" Makefile
+    sed -i -e "s|{DESTDIR}/var|{DESTDIR}$out/var|" Makefile
+    sed -i -e "s|{DESTDIR}/lib|{DESTDIR}$out/lib|" Makefile
+
+    find -type f -exec sed -i -e "s,/usr/lib/deepin-daemon,$out/lib/deepin-daemon," {} +
+  '';
+
+  buildPhase = ''
+    make -C go/src/${goPackagePath}
+    # compilation of the nm module is failing
+    #make -C go/src/${goPackagePath}/network/nm_generator gen-nm-code
+  '';
+
+  installPhase = ''
+    make install PREFIX="$out" -C go/src/${goPackagePath}
+    remove-references-to -t ${go} $out/lib/deepin-daemon/*
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Daemon for handling Deepin Desktop Environment session settings";
+    homepage = https://github.com/linuxdeepin/dde-daemon;
+    license = licenses.gpl3;
+    platforms = platforms.linux;
+    maintainers = with maintainers; [ romildo ];
+  };
+}
diff --git a/pkgs/desktops/deepin/dde-daemon/deps.nix b/pkgs/desktops/deepin/dde-daemon/deps.nix
new file mode 100644
index 000000000000..5ffecc28882d
--- /dev/null
+++ b/pkgs/desktops/deepin/dde-daemon/deps.nix
@@ -0,0 +1,102 @@
+# This file was generated by https://github.com/kamilchm/go2nix v1.2.1
+[
+  {
+    goPackagePath = "github.com/alecthomas/template";
+    fetch = {
+      type = "git";
+      url = "https://github.com/alecthomas/template";
+      rev = "a0175ee3bccc567396460bf5acd36800cb10c49c";
+      sha256 = "0qjgvvh26vk1cyfq9fadyhfgdj36f1iapbmr5xp6zqipldz8ffxj";
+    };
+  }
+  {
+    goPackagePath = "github.com/alecthomas/units";
+    fetch = {
+      type = "git";
+      url = "https://github.com/alecthomas/units";
+      rev = "2efee857e7cfd4f3d0138cc3cbb1b4966962b93a";
+      sha256 = "1j65b91qb9sbrml9cpabfrcf07wmgzzghrl7809hjjhrmbzri5bl";
+    };
+  }
+  {
+    goPackagePath = "github.com/axgle/mahonia";
+    fetch = {
+      type = "git";
+      url = "https://github.com/axgle/mahonia";
+      rev = "3358181d7394e26beccfae0ffde05193ef3be33a";
+      sha256 = "0b8wsrxmv8a0cqbnsg55lpf29pxy2zw8azvgh3ck664lqpcfybhq";
+    };
+  }
+  {
+    goPackagePath = "github.com/cryptix/wav";
+    fetch = {
+      type = "git";
+      url = "https://github.com/cryptix/wav";
+      rev = "8bdace674401f0bd3b63c65479b6a6ff1f9d5e44";
+      sha256 = "18nyqv0ic35fs9fny8sj84c00vbxs8mnric6vr6yl42624fh5id6";
+    };
+  }
+  {
+    goPackagePath = "github.com/linuxdeepin/go-x11-client";
+    fetch = {
+      type = "git";
+      url = "https://github.com/linuxdeepin/go-x11-client";
+      rev = "8f12fd35ff10b391f0321aa41b94db6acd951ea3";
+      sha256 = "1axxzzhbiwvi76d19bix3zm5wv3qmlq0wgji9mwjbmkb4bvp0v3d";
+    };
+  }
+  {
+    goPackagePath = "github.com/msteinert/pam";
+    fetch = {
+      type = "git";
+      url = "https://github.com/msteinert/pam";
+      rev = "f4cd9f5e29232537a12db1678f48c702ad6896b7";
+      sha256 = "1vjawxswy3f23v4d72kk95y3b557580670ai9ffvrwy6wy85qync";
+    };
+  }
+  {
+    goPackagePath = "github.com/nfnt/resize";
+    fetch = {
+      type = "git";
+      url = "https://github.com/nfnt/resize";
+      rev = "83c6a9932646f83e3267f353373d47347b6036b2";
+      sha256 = "005cpiwq28krbjf0zjwpfh63rp4s4is58700idn24fs3g7wdbwya";
+    };
+  }
+  {
+    goPackagePath = "golang.org/x/image";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/image";
+      rev = "991ec62608f3c0da01d400756917825d1e2fd528";
+      sha256 = "0jipi9czjczi6hlqb5kchgml8r6h6qyb4gqrb0nnb63m25510019";
+    };
+  }
+  {
+    goPackagePath = "golang.org/x/net";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/net";
+      rev = "04a2e542c03f1d053ab3e4d6e5abcd4b66e2be8e";
+      sha256 = "040i9f6ymj4z25957h20id9kfmlrcp35y4sfd99hngw9li50ihql";
+    };
+  }
+  {
+    goPackagePath = "golang.org/x/text";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/text";
+      rev = "4d1c5fb19474adfe9562c9847ba425e7da817e81";
+      sha256 = "1y4rf9cmjyf8r56khr1sz0chbq1v0ynaj63i2z1mq6k6h6ww45da";
+    };
+  }
+  {
+    goPackagePath = "gopkg.in/alecthomas/kingpin.v2";
+    fetch = {
+      type = "git";
+      url = "https://gopkg.in/alecthomas/kingpin.v2";
+      rev = "947dcec5ba9c011838740e680966fd7087a71d0d";
+      sha256 = "0mndnv3hdngr3bxp7yxfd47cas4prv98sqw534mx7vp38gd88n5r";
+    };
+  }
+]
diff --git a/pkgs/desktops/deepin/default.nix b/pkgs/desktops/deepin/default.nix
index 86e5fc37fa54..a6163cd32e20 100644
--- a/pkgs/desktops/deepin/default.nix
+++ b/pkgs/desktops/deepin/default.nix
@@ -6,6 +6,7 @@ let
     dbus-factory = callPackage ./dbus-factory { };
     dde-api = callPackage ./dde-api { };
     dde-calendar = callPackage ./dde-calendar { };
+    dde-daemon = callPackage ./dde-daemon { };
     dde-polkit-agent = callPackage ./dde-polkit-agent { };
     dde-qt-dbus-factory = callPackage ./dde-qt-dbus-factory { };
     dde-session-ui = callPackage ./dde-session-ui { };

From 38bb70413729ddfcf62df2848112a069e3814201 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Sun, 21 Oct 2018 18:42:39 -0300
Subject: [PATCH 0031/1129] dbus-factory: fix instalation directory for source

---
 pkgs/desktops/deepin/dbus-factory/default.nix | 6 +++++-
 1 file changed, 5 insertions(+), 1 deletion(-)

diff --git a/pkgs/desktops/deepin/dbus-factory/default.nix b/pkgs/desktops/deepin/dbus-factory/default.nix
index 66d28cbcaf3e..610e367b09f8 100644
--- a/pkgs/desktops/deepin/dbus-factory/default.nix
+++ b/pkgs/desktops/deepin/dbus-factory/default.nix
@@ -18,7 +18,11 @@ stdenv.mkDerivation rec {
     go-dbus-generator
   ];
 
-  makeFlags = [ "GOPATH=$(out)/share/gocode" ];
+  makeFlags = [ "GOPATH=$(out)/share/go" ];
+
+  postPatch = ''
+    sed -i -e 's:/share/gocode:/share/go:' Makefile
+  '';
 
   meta = with stdenv.lib; {
     description = "Generates static DBus bindings for Golang and QML at build-time";

From fffd13e5e0de80dcf922d5bbc07be26df1975d01 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Sun, 21 Oct 2018 18:58:03 -0300
Subject: [PATCH 0032/1129] go-dbus-factory: fix instalation directory for
 source

---
 pkgs/desktops/deepin/go-dbus-factory/default.nix | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/pkgs/desktops/deepin/go-dbus-factory/default.nix b/pkgs/desktops/deepin/go-dbus-factory/default.nix
index a488bd7202cb..b9b3aa59a0b1 100644
--- a/pkgs/desktops/deepin/go-dbus-factory/default.nix
+++ b/pkgs/desktops/deepin/go-dbus-factory/default.nix
@@ -12,9 +12,11 @@ stdenv.mkDerivation rec {
     sha256 = "0gj2xxv45gh7wr5ry3mcsi46kdsyq9nbd7znssn34kapiv40ixcx";
   };
 
-  makeFlags = [
-    "PREFIX=$(out)"
-  ];
+  makeFlags = [ "PREFIX=$(out)" ];
+
+  postPatch = ''
+    sed -i -e 's:/share/gocode:/share/go:' Makefile
+  '';
 
   meta = with stdenv.lib; {
     description = "GoLang DBus factory for the Deepin Desktop Environment";

From 6b087a3d21fc1054c69f45509919638e3f66a290 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Sun, 21 Oct 2018 19:06:23 -0300
Subject: [PATCH 0033/1129] go-lib: fix instalation directory for source

---
 pkgs/desktops/deepin/go-dbus-generator/default.nix | 3 +--
 pkgs/desktops/deepin/go-lib/default.nix            | 5 ++++-
 2 files changed, 5 insertions(+), 3 deletions(-)

diff --git a/pkgs/desktops/deepin/go-dbus-generator/default.nix b/pkgs/desktops/deepin/go-dbus-generator/default.nix
index 2933c58f8d95..fa38e650c3a9 100644
--- a/pkgs/desktops/deepin/go-dbus-generator/default.nix
+++ b/pkgs/desktops/deepin/go-dbus-generator/default.nix
@@ -19,8 +19,7 @@ stdenv.mkDerivation rec {
 
   makeFlags = [
     "PREFIX=$(out)"
-    "GOPATH=$(GGOPATH):${go-lib}/share/gocode"
-    "HOME=$(TMP)"
+    "GOCACHE=off"
   ];
 
   meta = with stdenv.lib; {
diff --git a/pkgs/desktops/deepin/go-lib/default.nix b/pkgs/desktops/deepin/go-lib/default.nix
index 44de8889df28..f1504500aa04 100644
--- a/pkgs/desktops/deepin/go-lib/default.nix
+++ b/pkgs/desktops/deepin/go-lib/default.nix
@@ -22,7 +22,10 @@ stdenv.mkDerivation rec {
     mobile-broadband-provider-info
   ];
 
-  makeFlags = [ "PREFIX=$(out)" ];
+  makeFlags = [
+    "PREFIX=$(out)"
+    "GOSITE_DIR=$(out)/share/go"
+  ];
 
   meta = with stdenv.lib; {
     description = "Go bindings for Deepin Desktop Environment development";

From 3c1395073364310c9cdf4f5357740e285e47d193 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Sun, 21 Oct 2018 19:48:44 -0300
Subject: [PATCH 0034/1129] go-lib: 1.2.16.1 -> 1.2.16.3

---
 pkgs/desktops/deepin/go-lib/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/deepin/go-lib/default.nix b/pkgs/desktops/deepin/go-lib/default.nix
index f1504500aa04..ff9394425e08 100644
--- a/pkgs/desktops/deepin/go-lib/default.nix
+++ b/pkgs/desktops/deepin/go-lib/default.nix
@@ -5,13 +5,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "go-lib";
-  version = "1.2.16.1";
+  version = "1.2.16.3";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "0nl35dm0bdca38qhnzdpsv6b0vds9ccvm4c86rs42a7c6v655b1q";
+    sha256 = "0dk6k53in3ffwwvkr0sazfk83rf4fyc6rvb6k8fi2n3qj4gp8xd2";
   };
 
   buildInputs = [

From 444ce2dbdf9932d563ac4be0c634b7c3a8997f91 Mon Sep 17 00:00:00 2001
From: midchildan <midchildan+git@gmail.com>
Date: Mon, 1 Oct 2018 20:45:53 +0900
Subject: [PATCH 0035/1129] sourcetrail: init at 2018.3.55

---
 .../development/tools/sourcetrail/default.nix | 75 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 2 files changed, 77 insertions(+)
 create mode 100644 pkgs/development/tools/sourcetrail/default.nix

diff --git a/pkgs/development/tools/sourcetrail/default.nix b/pkgs/development/tools/sourcetrail/default.nix
new file mode 100644
index 000000000000..2182f8697aab
--- /dev/null
+++ b/pkgs/development/tools/sourcetrail/default.nix
@@ -0,0 +1,75 @@
+{ stdenv, fetchurl, autoPatchelfHook
+, icu, zlib, expat, dbus, libheimdal, openssl}:
+
+stdenv.mkDerivation rec {
+  name = "sourcetrail-${version}";
+  version = "2018.3.55";
+
+  src = fetchurl {
+    name = "sourtrail.tar.gz";
+    url = "https://www.sourcetrail.com/downloads/${version}/linux/64bit";
+    sha256 = "6f5fbbecc221e7165ecbf1c4d208e302dade4feea9d43eb3265521efc0a376e2";
+  };
+
+  nativeBuildInputs = [ autoPatchelfHook ];
+  buildInputs = [ zlib expat dbus stdenv.cc.cc openssl ];
+
+  installPhase = ''
+    runHook preInstall
+
+    mkdir -p $out/bin $out/opt
+
+    mv -v setup/share $out
+    mv -v data/gui/icon/logo_1024_1024.png $out/share/icons/sourcetrail.png
+    mv -v data/gui/icon/project_256_256.png $out/share/icons/project-sourcetrail.png
+
+    mkdir -p $out/share/sourcetrail/doc
+    mv -v README EULA.txt $out/share/sourcetrail/doc
+    mv -v plugin $out/share/sourcetrail
+
+    cp -rv . $out/opt
+
+    rm $out/opt/lib/libssl.so
+    rm $out/opt/lib/platforms/{libqeglfs.so,libqwebgl.so}
+    ln -s ${openssl}/lib/libssl.so $out/opt/lib/libssl.so
+
+    substituteInPlace \
+      $out/share/applications/sourcetrail.desktop \
+      --replace /usr/bin/ $out/bin/
+
+    cat <<EOF > $out/bin/sourcetrail
+      #! ${stdenv.shell} -e
+
+      # XXX: Sourcetrail somehow copies the initial config files into the home
+      # directory without write permissions. We currently just copy them
+      # ourselves to work around this problem.
+      setup_config() {
+        local src dst
+
+        [ ! -d ~/.config/sourcetrail ] && mkdir -p ~/.config/sourcetrail
+        for src in $out/opt/data/fallback/*; do
+          dst=~/.config/sourcetrail/"\$(basename "\$src")"
+          if [ ! -e "\$dst" ]; then
+            cp -r "\$src" "\$dst"
+          fi
+        done
+
+        chmod -R u+w ~/.config/sourcetrail
+      }
+
+      [ -d "\$HOME" ] && setup_config
+      exec "$out/opt/Sourcetrail.sh" "\$@"
+    EOF
+    chmod +x $out/bin/sourcetrail
+
+    runHook postInstall
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = https://www.sourcetrail.com;
+    description = "A cross-platform source explorer for C/C++ and Java";
+    platforms = [ "x86_64-linux" ];
+    license = licenses.unfree;
+    maintainers = with maintainers; [ midchildan ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index cfbc6687f9d1..c494c5d634c8 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -18930,6 +18930,8 @@ with pkgs;
     apiKey = config.libspotify.apiKey or null;
   };
 
+  sourcetrail = callPackage ../development/tools/sourcetrail { };
+
   spotifywm = callPackage ../applications/audio/spotifywm { };
 
   squeezelite = callPackage ../applications/audio/squeezelite { };

From 43011b7b43414e65d9c3a9fadf45e436a54b0665 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Tue, 23 Oct 2018 18:44:37 +0200
Subject: [PATCH 0036/1129] lib[ibverbs,rdmacm]: remove in favour of rdma-core

libibverbs and librdmacm are outdated and have
been replaced by the package rdma-core
---
 .../libraries/libibverbs/default.nix          | 79 -------------------
 .../libraries/librdmacm/default.nix           | 36 ---------
 pkgs/top-level/all-packages.nix               |  6 +-
 3 files changed, 1 insertion(+), 120 deletions(-)
 delete mode 100644 pkgs/development/libraries/libibverbs/default.nix
 delete mode 100644 pkgs/development/libraries/librdmacm/default.nix

diff --git a/pkgs/development/libraries/libibverbs/default.nix b/pkgs/development/libraries/libibverbs/default.nix
deleted file mode 100644
index 2243f832b7a6..000000000000
--- a/pkgs/development/libraries/libibverbs/default.nix
+++ /dev/null
@@ -1,79 +0,0 @@
-{ stdenv, fetchurl }:
-
-let
-
-  verbs = rec {
-      version = "1.1.8";
-      name = "libibverbs-${version}";
-      url = "http://downloads.openfabrics.org/verbs/${name}.tar.gz";
-      sha256 = "13w2j5lrrqxxxvhpxbqb70x7wy0h8g329inzgfrvqv8ykrknwxkw";
-  };
-
-  drivers = {
-      libmlx4 = rec { 
-          version = "1.0.6";
-          name = "libmlx4-${version}"; 
-          url = "http://downloads.openfabrics.org/mlx4/${name}.tar.gz";
-          sha256 = "f680ecbb60b01ad893490c158b4ce8028a3014bb8194c2754df508d53aa848a8";
-      };
-      libmthca = rec { 
-          version = "1.0.6"; 
-          name = "libmthca-${version}"; 
-          url = "http://downloads.openfabrics.org/mthca/${name}.tar.gz";
-          sha256 = "cc8ea3091135d68233d53004e82b5b510009c821820494a3624e89e0bdfc855c";
-      };
-  };
-
-in stdenv.mkDerivation rec {
-
-  inherit (verbs) name version ;
-
-  srcs = [
-    ( fetchurl { inherit (verbs) url sha256 ; } )
-    ( fetchurl { inherit (drivers.libmlx4) url sha256 ; } )
-    ( fetchurl { inherit (drivers.libmthca) url sha256 ; } )
-  ];
-
-  sourceRoot = name;
-
-  # Install userspace drivers
-  postInstall = ''
-    for dir in ${drivers.libmlx4.name} ${drivers.libmthca.name} ; do
-      cd ../$dir
-      export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -I$out/include"
-      export NIX_LDFLAGS="-rpath $out/lib $NIX_LDFLAGS -L$out/lib"
-      ./configure $configureFlags
-      make -j$NIX_BUILD_CORES
-      make install
-    done
-
-    mkdir -p $out/lib/pkgconfig
-    cat >$out/lib/pkgconfig/ibverbs.pc <<EOF
-    prefix=$out
-    exec_prefix=\''${prefix}
-    libdir=\''${exec_prefix}/lib
-    includedir=\''${prefix}/include
-
-    Name: IB verbs
-    Version: ${version}
-    Description: Library for direct userspace use of RDMA (InfiniBand/iWARP)
-    Libs: -L\''${libdir} -libverbs
-    Cflags: -I\''${includedir}
-    EOF
-  '';
-
-  # Re-add the libibverbs path into runpath of the library
-  # to enable plugins to be found by dlopen
-  postFixup = ''
-    RPATH=$(patchelf --print-rpath $out/lib/libibverbs.so)
-    patchelf --set-rpath $RPATH:$out/lib $out/lib/libibverbs.so.1.0.0
-  '';
-
-  meta = with stdenv.lib; {
-    homepage = https://www.openfabrics.org/;
-    license = licenses.bsd2;
-    platforms = with platforms; linux ++ freebsd;
-    maintainers = with maintainers; [ wkennington bzizou ];
-  };
-}
-
diff --git a/pkgs/development/libraries/librdmacm/default.nix b/pkgs/development/libraries/librdmacm/default.nix
deleted file mode 100644
index 3b84ead7cec1..000000000000
--- a/pkgs/development/libraries/librdmacm/default.nix
+++ /dev/null
@@ -1,36 +0,0 @@
-{ stdenv, fetchurl, libibverbs }:
-
-stdenv.mkDerivation rec {
-  name = "librdmacm-${version}";
-  version = "1.1.0";
-
-  src = fetchurl {
-    url = "https://www.openfabrics.org/downloads/rdmacm/${name}.tar.gz";
-    sha256 = "1ic0qd5ayvkybh4pxc5qx7sqvny1fv4anhxlf1nmsn0h926q844g";
-  };
-
-  buildInputs = [ libibverbs ];
-
-  postInstall = ''
-    mkdir -p $out/lib/pkgconfig
-    cat >$out/lib/pkgconfig/rdmacm.pc <<EOF
-    prefix=$out
-    exec_prefix=\''${prefix}
-    libdir=\''${exec_prefix}/lib
-    includedir=\''${prefix}/include
-
-    Name: RDMA library
-    Version: ${version}
-    Description: Library for managing RDMA connections
-    Libs: -L\''${libdir} -lrdmacm
-    Cflags: -I\''${includedir}
-    EOF
-  '';
-
-  meta = with stdenv.lib; {
-    homepage = https://www.openfabrics.org/;
-    platforms = with platforms; linux ++ freebsd;
-    license = licenses.bsd2;
-    maintainers = with maintainers; [ wkennington ];
-  };
-}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 27175da249c3..1df4628a8f67 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -3878,8 +3878,6 @@ with pkgs;
 
   libiberty_static = libiberty.override { staticBuild = true; };
 
-  libibverbs = callPackage ../development/libraries/libibverbs { };
-
   libxc = callPackage ../development/libraries/libxc { };
 
   libxcomp = callPackage ../development/libraries/libxcomp { };
@@ -3890,8 +3888,6 @@ with pkgs;
 
   libzmf = callPackage ../development/libraries/libzmf {};
 
-  librdmacm = callPackage ../development/libraries/librdmacm { };
-
   libreswan = callPackage ../tools/networking/libreswan { };
 
   libwebsockets = callPackage ../development/libraries/libwebsockets { };
@@ -21125,7 +21121,7 @@ with pkgs;
   liblapackWithAtlas = liblapack;
 
   liblbfgs = callPackage ../development/libraries/science/math/liblbfgs { };
-  
+
   lrs = callPackage ../development/libraries/science/math/lrs { };
 
   m4ri = callPackage ../development/libraries/science/math/m4ri { };

From 93c7503adb4914a2aaba5f11354ba41bddbbb8ee Mon Sep 17 00:00:00 2001
From: Lancelot SIX <lsix@lancelotsix.com>
Date: Tue, 23 Oct 2018 22:12:21 +0200
Subject: [PATCH 0037/1129] pythonPackages.OWSLib: init at 0.17.0

---
 .../python-modules/owslib/default.nix         | 22 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 24 insertions(+)
 create mode 100644 pkgs/development/python-modules/owslib/default.nix

diff --git a/pkgs/development/python-modules/owslib/default.nix b/pkgs/development/python-modules/owslib/default.nix
new file mode 100644
index 000000000000..7331511568fa
--- /dev/null
+++ b/pkgs/development/python-modules/owslib/default.nix
@@ -0,0 +1,22 @@
+{ lib, buildPythonPackage, fetchPypi, dateutil, requests, pytz, pyproj , pytest } :
+buildPythonPackage rec {
+  pname = "OWSLib";
+  version = "0.17.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1px2nmbpbpp556kjq0ym0a7j24nbvs4w829727b2gr4a4ff86hxc";
+  };
+
+  buildInputs = [ pytest ];
+  propagatedBuildInputs = [ dateutil pyproj pytz requests ];
+
+  # 'tests' dir not included in pypy distribution archive.
+  doCheck = false;
+
+  meta = with lib; {
+    description = "client for Open Geospatial Consortium web service interface standards";
+    license = licenses.bsd3;
+    homepage = https://www.osgeo.org/projects/owslib/;
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 6c5870b529c1..59535a058ceb 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -4435,6 +4435,8 @@ in {
     };
   };
 
+  owslib = callPackage ../development/python-modules/owslib { };
+
   PyICU = buildPythonPackage rec {
     name = "PyICU-2.0.3";
 

From 09ade5d281358625562d1dc3890712e7e5ec2a75 Mon Sep 17 00:00:00 2001
From: Manuel Mendez <mmendez534@gmail.com>
Date: Thu, 4 Oct 2018 16:06:26 -0400
Subject: [PATCH 0038/1129] pythonPackages.dpath: init at 1.4.2

---
 .../python-modules/dpath/default.nix          | 25 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 27 insertions(+)
 create mode 100644 pkgs/development/python-modules/dpath/default.nix

diff --git a/pkgs/development/python-modules/dpath/default.nix b/pkgs/development/python-modules/dpath/default.nix
new file mode 100644
index 000000000000..3b878f7d5e4c
--- /dev/null
+++ b/pkgs/development/python-modules/dpath/default.nix
@@ -0,0 +1,25 @@
+{ stdenv, fetchPypi, buildPythonPackage
+, mock, nose
+}:
+
+buildPythonPackage rec {
+  pname = "dpath";
+  version = "1.4.2";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0gr7816pnzbyh9h1ia0qz0q1f9zfzacwb8dc36js8hw8x14myqqg";
+  };
+
+  checkInputs = [ mock nose ];
+  checkPhase = ''
+    nosetests
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/akesterson/dpath-python;
+    license = [ licenses.mit ];
+    description = "A python library for accessing and searching dictionaries via /slashed/paths ala xpath";
+    maintainers = [ maintainers.mmlb ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 6c5870b529c1..4b7ee3c2e6c1 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -1482,6 +1482,8 @@ in {
 
   dopy = callPackage ../development/python-modules/dopy { };
 
+  dpath = callPackage ../development/python-modules/dpath { };
+
   dpkt = callPackage ../development/python-modules/dpkt {};
 
   urllib3 = callPackage ../development/python-modules/urllib3 {};

From 7e814079533e0868589ab6267d9a4e4c5fe83b67 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Wed, 24 Oct 2018 21:34:55 +0200
Subject: [PATCH 0039/1129] urh: add support for airspy and limesdr

---
 pkgs/applications/misc/urh/default.nix | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/urh/default.nix b/pkgs/applications/misc/urh/default.nix
index 2d370113873e..b406df5b1e21 100644
--- a/pkgs/applications/misc/urh/default.nix
+++ b/pkgs/applications/misc/urh/default.nix
@@ -1,4 +1,5 @@
-{ stdenv, fetchFromGitHub, python3Packages, hackrf, rtl-sdr }:
+{ stdenv, fetchFromGitHub, python3Packages
+, hackrf, rtl-sdr, airspy, limesuite }:
 
 python3Packages.buildPythonApplication rec {
   name = "urh-${version}";
@@ -11,7 +12,7 @@ python3Packages.buildPythonApplication rec {
     sha256 = "0cwbqcv0yffg6fa3g4zknwffa6119i6827w6jm74fhlfa9kwy34c";
   };
 
-  buildInputs = [ hackrf rtl-sdr ];
+  buildInputs = [ hackrf rtl-sdr airspy limesuite ];
   propagatedBuildInputs = with python3Packages; [
     pyqt5 numpy psutil cython pyzmq
   ];

From eec630fb1ecba8ef971372301e4e4048b6ff952a Mon Sep 17 00:00:00 2001
From: David Costa <david@zarel.net>
Date: Thu, 25 Oct 2018 14:34:11 +0100
Subject: [PATCH 0040/1129] mailcatcher: repackage using bundlerApp

---
 pkgs/development/web/mailcatcher/default.nix | 30 ++++----------------
 1 file changed, 6 insertions(+), 24 deletions(-)

diff --git a/pkgs/development/web/mailcatcher/default.nix b/pkgs/development/web/mailcatcher/default.nix
index 49c5c4d81af1..a2fa509232de 100644
--- a/pkgs/development/web/mailcatcher/default.nix
+++ b/pkgs/development/web/mailcatcher/default.nix
@@ -1,29 +1,11 @@
-{ stdenv, bundlerEnv, ruby, makeWrapper }:
+{ lib, bundlerApp }:
 
-stdenv.mkDerivation rec {
-  name = "mailcatcher-${version}";
+bundlerApp {
+  pname = "mailcatcher";
+  gemdir = ./.;
+  exes = [ "mailcatcher" "catchmail" ];
 
-  version = (import ./gemset.nix).mailcatcher.version;
-
-  env = bundlerEnv {
-    name = "${name}-gems";
-
-    inherit ruby;
-
-    gemdir = ./.;
-  };
-
-  buildInputs = [ makeWrapper ];
-
-  unpackPhase = ":";
-
-  installPhase = ''
-    mkdir -p $out/bin
-    makeWrapper ${env}/bin/mailcatcher $out/bin/mailcatcher
-    makeWrapper ${env}/bin/catchmail $out/bin/catchmail
-  '';
-
-  meta = with stdenv.lib; {
+  meta = with lib; {
     description = "SMTP server and web interface to locally test outbound emails";
     homepage    = https://mailcatcher.me/;
     license     = licenses.mit;

From 950608bae0b4fd15d603c5ec4686c170df85a1d3 Mon Sep 17 00:00:00 2001
From: Nick Novitski <nick@expo.io>
Date: Mon, 22 Oct 2018 16:00:14 -0700
Subject: [PATCH 0041/1129] androidsdk: 25.2.5 -> 26.1.1, license agreement

---
 .../mobile/androidenv/androidsdk.nix          | 61 +++++++++----------
 .../development/mobile/androidenv/default.nix |  4 +-
 pkgs/top-level/all-packages.nix               |  1 +
 3 files changed, 33 insertions(+), 33 deletions(-)

diff --git a/pkgs/development/mobile/androidenv/androidsdk.nix b/pkgs/development/mobile/androidenv/androidsdk.nix
index 5f61f25d54ee..feef5a787bf2 100644
--- a/pkgs/development/mobile/androidenv/androidsdk.nix
+++ b/pkgs/development/mobile/androidenv/androidsdk.nix
@@ -4,10 +4,18 @@
 , freetype, fontconfig, glib, gtk2, atk, file, jdk, coreutils, libpulseaudio, dbus
 , zlib, glxinfo, xkeyboardconfig
 , includeSources
+, licenseAccepted
 }:
 { platformVersions, abiVersions, useGoogleAPIs, useExtraSupportLibs ? false
 , useGooglePlayServices ? false, useInstantApps ? false }:
 
+if !licenseAccepted then throw ''
+    You must accept the Android Software Development Kit License Agreement at
+    https://developer.android.com/studio/terms
+    by setting nixpkgs config option 'android_sdk.accept_license = true;'
+  ''
+else assert licenseAccepted;
+
 let inherit (stdenv.lib) makeLibraryPath;
 
     googleRepository = let version = "gms_v9_rc41_wear_2_0_rc6";
@@ -20,16 +28,16 @@ in
 
 stdenv.mkDerivation rec {
   name = "android-sdk-${version}";
-  version = "25.2.5";
+  version = "26.1.1";
 
   src = if (stdenv.hostPlatform.system == "i686-linux" || stdenv.hostPlatform.system == "x86_64-linux")
     then fetchurl {
-      url = "https://dl.google.com/android/repository/tools_r${version}-linux.zip";
-      sha256 = "0gnk49pkwy4m0nqwm1xnf3w4mfpi9w0kk7841xlawpwbkj0icxap";
+      url = "https://dl.google.com/android/repository/sdk-tools-linux-4333796.zip";
+      sha256 = "1yfy0qqxz1ixpsci1pizls1nrncmi8p16wcb9rimdn4q3mdfxzwj";
     }
     else if stdenv.hostPlatform.system == "x86_64-darwin" then fetchurl {
-      url = "http://dl.google.com/android/repository/tools_r${version}-macosx.zip";
-      sha256 = "0yg7wjmyw70xsh8k4hgbqb5rilam2a94yc8dwbh7fjwqcmpxgwqb";
+      url = "https://dl.google.com/android/repository/sdk-tools-darwin-4333796.zip";
+      sha256 = "0gl5c30m40kx0vvrpbaa8cw8wq2vb89r14hgzb1df4qgpic97cpc";
     }
     else throw "platform not ${stdenv.hostPlatform.system} supported!";
 
@@ -39,7 +47,7 @@ stdenv.mkDerivation rec {
     unpackFile $src
     cd tools
 
-    for f in android traceview draw9patch hierarchyviewer monitor ddms screenshot2 uiautomatorviewer monkeyrunner jobb lint
+    for f in monitor bin/monkeyrunner bin/uiautomatorviewer
     do
         sed -i -e "s|/bin/ls|${coreutils}/bin/ls|" "$f"
     done
@@ -54,24 +62,6 @@ stdenv.mkDerivation rec {
           patchelf --set-rpath ${stdenv_32bit.cc.cc.lib}/lib $i
       done
 
-      ${stdenv.lib.optionalString (stdenv.hostPlatform.system == "x86_64-linux") ''
-        for i in bin64/{mkfs.ext4,fsck.ext4,e2fsck,tune2fs,resize2fs}
-        do
-            patchelf --set-interpreter ${stdenv.cc.libc.out}/lib/ld-linux-x86-64.so.2 $i
-            patchelf --set-rpath ${stdenv.cc.cc.lib}/lib64 $i
-        done
-      ''}
-
-      ${stdenv.lib.optionalString (stdenv.hostPlatform.system == "x86_64-linux") ''
-        # We must also patch the 64-bit emulator instances, if needed
-
-        for i in emulator emulator64-arm emulator64-mips emulator64-x86 emulator64-crash-service emulator-check qemu/linux-x86_64/qemu-system-*
-        do
-            patchelf --set-interpreter ${stdenv.cc.libc.out}/lib/ld-linux-x86-64.so.2 $i
-            patchelf --set-rpath ${stdenv.cc.cc.lib}/lib64 $i
-        done
-      ''}
-
       # The following scripts used SWT and wants to dynamically load some GTK+ stuff.
       # Creating these wrappers ensure that they can be found:
 
@@ -79,22 +69,18 @@ stdenv.mkDerivation rec {
         --prefix PATH : ${jdk}/bin \
         --prefix LD_LIBRARY_PATH : ${makeLibraryPath [ glib gtk2 libXtst ]}
 
-      wrapProgram `pwd`/uiautomatorviewer \
-        --prefix PATH : ${jdk}/bin \
-        --prefix LD_LIBRARY_PATH : ${stdenv.lib.makeLibraryPath [ glib gtk2 libXtst ]}
-
-      wrapProgram `pwd`/hierarchyviewer \
+      wrapProgram `pwd`/bin/uiautomatorviewer \
         --prefix PATH : ${jdk}/bin \
         --prefix LD_LIBRARY_PATH : ${stdenv.lib.makeLibraryPath [ glib gtk2 libXtst ]}
 
       # The emulators need additional libraries, which are dynamically loaded => let's wrap them
 
       ${stdenv.lib.optionalString (stdenv.hostPlatform.system == "x86_64-linux") ''
-        for i in emulator emulator64-arm emulator64-mips emulator64-x86 emulator64-crash-service
+        for i in emulator emulator-check
         do
             wrapProgram `pwd`/$i \
               --prefix PATH : ${stdenv.lib.makeBinPath [ file glxinfo ]} \
-              --suffix LD_LIBRARY_PATH : `pwd`/lib64:`pwd`/lib64/qt/lib:${makeLibraryPath [ stdenv.cc.cc libX11 libxcb libXau libXdmcp libXext libGLU_combined alsaLib zlib libpulseaudio dbus.lib ]} \
+              --suffix LD_LIBRARY_PATH : `pwd`/lib:${makeLibraryPath [ stdenv.cc.cc libX11 libxcb libXau libXdmcp libXext libGLU_combined alsaLib zlib libpulseaudio dbus.lib ]} \
               --suffix QT_XKB_CONFIG_ROOT : ${xkeyboardconfig}/share/X11/xkb
         done
       ''}
@@ -245,6 +231,14 @@ stdenv.mkDerivation rec {
         fi
     done
 
+    for i in $out/libexec/tools/bin/*
+    do
+        if [ ! -d $i ] && [ -x $i ]
+        then
+            ln -sf $i $out/bin/$(basename $i)
+        fi
+    done
+
     for i in $out/libexec/platform-tools/*
     do
         if [ ! -d $i ] && [ -x $i ]
@@ -260,6 +254,11 @@ stdenv.mkDerivation rec {
             ln -sf $i $out/bin/$(basename $i)
         fi
     done
+
+    wrapProgram $out/bin/sdkmanager \
+      --set JAVA_HOME ${jdk}
+
+    yes | ANDROID_SDK_HOME=$(mktemp -d) $out/bin/sdkmanager --licenses || true
   '';
 
   buildInputs = [ unzip makeWrapper ];
diff --git a/pkgs/development/mobile/androidenv/default.nix b/pkgs/development/mobile/androidenv/default.nix
index 1f61be9440b0..bd369200bd5f 100644
--- a/pkgs/development/mobile/androidenv/default.nix
+++ b/pkgs/development/mobile/androidenv/default.nix
@@ -1,5 +1,5 @@
 { buildPackages, pkgs, pkgs_i686, targetPackages
-, includeSources ? true
+, includeSources ? true, licenseAccepted ? false
 }:
 
 # TODO: use callPackage instead of import to avoid so many inherits
@@ -57,7 +57,7 @@ rec {
 
     inherit platformTools buildTools support
             supportRepository platforms sysimages
-            addons sources includeSources;
+            addons sources includeSources licenseAccepted;
 
     stdenv_32bit = pkgs_i686.stdenv;
   };
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index e50ad0a0b45e..9a04bd44f0b4 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -766,6 +766,7 @@ with pkgs;
 
   androidenv = callPackage ../development/mobile/androidenv {
     pkgs_i686 = pkgsi686Linux;
+    licenseAccepted = (config.android_sdk.accept_license or false);
   };
 
   inherit (androidenv) androidndk;

From ad501e4c2fc1f98ee3146c19d8ab38a27b5ebceb Mon Sep 17 00:00:00 2001
From: Nick Novitski <nick@expo.io>
Date: Mon, 22 Oct 2018 16:01:40 -0700
Subject: [PATCH 0042/1129] androidenv.buildtools: 28.0.2 -> 28.0.3

---
 pkgs/development/mobile/androidenv/build-tools.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/mobile/androidenv/build-tools.nix b/pkgs/development/mobile/androidenv/build-tools.nix
index 85e604bd3f44..a607ed31900e 100644
--- a/pkgs/development/mobile/androidenv/build-tools.nix
+++ b/pkgs/development/mobile/androidenv/build-tools.nix
@@ -1,16 +1,16 @@
 {stdenv, stdenv_32bit, fetchurl, unzip, zlib_32bit, ncurses_32bit, file, zlib, ncurses}:
 
 stdenv.mkDerivation rec {
-  version = "26.0.2";
+  version = "28.0.3";
   name = "android-build-tools-r${version}";
   src = if (stdenv.hostPlatform.system == "i686-linux" || stdenv.hostPlatform.system == "x86_64-linux")
     then fetchurl {
       url = "https://dl.google.com/android/repository/build-tools_r${version}-linux.zip";
-      sha256 = "1kii880bwhjkc343zwx1ysxyisxhczrwhphnxbwsgi45mjgq8lm7";
+      sha256 = "16klhw9yk8znvbgvg967km4y5sb87z1cnf6njgv8hg3381m9am3r";
     }
     else if stdenv.hostPlatform.system == "x86_64-darwin" then fetchurl {
       url = "https://dl.google.com/android/repository/build-tools_r${version}-macosx.zip";
-      sha256 = "1x0ycprl6hgsm23kck5ind7x00hzydc5k3h3ch4a13407xbpvzvx";
+      sha256 = "1src9g7058bl2z9y6v404gwqwpixb8b71awxhrb0w5iwnfabhymq";
     }
     else throw "System ${stdenv.hostPlatform.system} not supported!";
 

From 8b5a7597592550614b2de79c31abb090afcb3a5f Mon Sep 17 00:00:00 2001
From: Matt McHenry <github@matt.mchenryfamily.org>
Date: Sun, 14 Oct 2018 12:47:04 -0400
Subject: [PATCH 0043/1129] jdk: give more detail when bootstrap jdks are
 missing

---
 pkgs/development/compilers/openjdk/bootstrap.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/compilers/openjdk/bootstrap.nix b/pkgs/development/compilers/openjdk/bootstrap.nix
index 612f0db05821..1b20ca6cc606 100644
--- a/pkgs/development/compilers/openjdk/bootstrap.nix
+++ b/pkgs/development/compilers/openjdk/bootstrap.nix
@@ -16,12 +16,12 @@ let
   src = if stdenv.hostPlatform.system == "x86_64-linux" then
     (if version == "10"    then fetchboot "10" "x86_64" "08085fsxc1qhqiv3yi38w8lrg3vm7s0m2yvnwr1c92v019806yq2"
     else if version == "8" then fetchboot "8"  "x86_64" "18zqx6jhm3lizn9hh6ryyqc9dz3i96pwaz8f6nxfllk70qi5gvks"
-    else throw "No bootstrap for version")
+    else throw "No bootstrap jdk for version ${version}")
   else if stdenv.hostPlatform.system == "i686-linux" then
     (if version == "10"    then fetchboot "10" "i686" "1blb9gyzp8gfyggxvggqgpcgfcyi00ndnnskipwgdm031qva94p7"
     else if version == "8" then fetchboot "8"  "i686" "1yx04xh8bqz7amg12d13rw5vwa008rav59mxjw1b9s6ynkvfgqq9"
     else throw "No bootstrap for version")
-  else throw "No bootstrap for system";
+  else throw "No bootstrap jdk for system ${stdenv.hostPlatform.system}";
 
   bootstrap = runCommand "openjdk-bootstrap" {
     passthru.home = "${bootstrap}/lib/openjdk";

From 26ee8d6479029d389a9f66f0101fd325d0c900cf Mon Sep 17 00:00:00 2001
From: Symphorien Gibol <symphorien+git@xlumurb.eu>
Date: Fri, 26 Oct 2018 21:08:42 +0200
Subject: [PATCH 0044/1129] brlaser: fix install dir

Fixes #49092
---
 pkgs/misc/cups/drivers/brlaser/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/misc/cups/drivers/brlaser/default.nix b/pkgs/misc/cups/drivers/brlaser/default.nix
index 46c38892bf8f..08cc222e4a5b 100644
--- a/pkgs/misc/cups/drivers/brlaser/default.nix
+++ b/pkgs/misc/cups/drivers/brlaser/default.nix
@@ -14,7 +14,7 @@ stdenv.mkDerivation rec {
   nativeBuildInputs = [ cmake ];
   buildInputs = [ zlib cups ];
 
-  cmakeFlags = [ "-DCUPS_SERVER_BIN=$out/lib/cups" "-DCUPS_DATA_DIR=$out/share/cups" ];
+  cmakeFlags = [ "-DCUPS_SERVER_BIN=lib/cups" "-DCUPS_DATA_DIR=share/cups" ];
 
   meta = with stdenv.lib; {
     description = "A CUPS driver for Brother laser printers";

From 41a579aa68a58bd496b852dd6380fa81f9cf0a7f Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Sat, 27 Oct 2018 01:06:07 +0200
Subject: [PATCH 0045/1129] scalapack: switch to openblas + add test

* change from blas,lapack to openblas
* add check phase
* enable parallel building
* fix license
---
 .../science/math/scalapack/default.nix        | 42 ++++++++++++++-----
 1 file changed, 32 insertions(+), 10 deletions(-)

diff --git a/pkgs/development/libraries/science/math/scalapack/default.nix b/pkgs/development/libraries/science/math/scalapack/default.nix
index 83e177c66c18..3961374a9b11 100644
--- a/pkgs/development/libraries/science/math/scalapack/default.nix
+++ b/pkgs/development/libraries/science/math/scalapack/default.nix
@@ -1,11 +1,7 @@
-{ stdenv
-, fetchurl
-, gfortran
-, cmake
-, blas
-, liblapack
-, mpi
-}:
+{ stdenv, fetchurl, cmake, openssh
+, gfortran, mpi, openblasCompat
+} :
+
 
 stdenv.mkDerivation rec {
   name = "scalapack-${version}";
@@ -16,12 +12,38 @@ stdenv.mkDerivation rec {
     sha256 = "0p1r61ss1fq0bs8ynnx7xq4wwsdvs32ljvwjnx6yxr8gd6pawx0c";
   };
 
-  buildInputs = [ cmake mpi liblapack blas gfortran ];
+  nativeBuildInputs = [ cmake openssh ];
+  buildInputs = [ mpi gfortran openblasCompat ];
+
+  enableParallelBuilding = true;
+
+  doCheck = true;
+
+  preConfigure = ''
+    cmakeFlagsArray+=(
+      -DBUILD_SHARED_LIBS=ON -DBUILD_STATIC_LIBS=OFF
+      -DLAPACK_LIBRARIES="-lopenblas"
+      -DBLAS_LIBRARIES="-lopenblas"
+      )
+  '';
+
+  checkPhase = ''
+    # make sure the test starts even if we have less than 4 cores
+    export OMPI_MCA_rmaps_base_oversubscribe=1
+
+    # Run single threaded
+    export OMP_NUM_THREADS=1
+
+    export LD_LIBRARY_PATH=$LD_LIBRARY_PATH:`pwd`/lib
+    export CTEST_OUTPUT_ON_FAILURE=1
+
+    make test
+  '';
 
   meta = with stdenv.lib; {
     homepage = http://www.netlib.org/scalapack/;
     description = "Library of high-performance linear algebra routines for parallel distributed memory machines";
-    license = licenses.bsdOriginal;
+    license = licenses.bsd3;
     platforms = platforms.all;
     maintainers = [ maintainers.costrouc ];
   };

From f5c2960a1136326a8d24720aca17683b28077ee2 Mon Sep 17 00:00:00 2001
From: Nick Novitski <nick@expo.io>
Date: Wed, 24 Oct 2018 20:36:33 -0700
Subject: [PATCH 0046/1129] androidenv.buildTools: patch hard-coded /bin/ls
 paths

---
 pkgs/development/mobile/androidenv/build-tools.nix | 9 +++++++--
 pkgs/development/mobile/androidenv/default.nix     | 2 +-
 2 files changed, 8 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/mobile/androidenv/build-tools.nix b/pkgs/development/mobile/androidenv/build-tools.nix
index a607ed31900e..f0b9a77d3f19 100644
--- a/pkgs/development/mobile/androidenv/build-tools.nix
+++ b/pkgs/development/mobile/androidenv/build-tools.nix
@@ -1,4 +1,4 @@
-{stdenv, stdenv_32bit, fetchurl, unzip, zlib_32bit, ncurses_32bit, file, zlib, ncurses}:
+{stdenv, stdenv_32bit, fetchurl, unzip, zlib_32bit, ncurses_32bit, file, zlib, ncurses, coreutils}:
 
 stdenv.mkDerivation rec {
   version = "28.0.3";
@@ -20,9 +20,14 @@ stdenv.mkDerivation rec {
     unzip $src
     mv android-* ${version}
 
+    cd ${version}
+
+    for f in $(grep -Rl /bin/ls .); do
+      sed -i -e "s|/bin/ls|${coreutils}/bin/ls|" "$f"
+    done
+
     ${stdenv.lib.optionalString (stdenv.hostPlatform.system == "i686-linux" || stdenv.hostPlatform.system == "x86_64-linux")
       ''
-        cd ${version}
 
         ln -s ${ncurses.out}/lib/libncurses.so.5 `pwd`/lib64/libtinfo.so.5
 
diff --git a/pkgs/development/mobile/androidenv/default.nix b/pkgs/development/mobile/androidenv/default.nix
index bd369200bd5f..0291986b5a4a 100644
--- a/pkgs/development/mobile/androidenv/default.nix
+++ b/pkgs/development/mobile/androidenv/default.nix
@@ -10,7 +10,7 @@ rec {
   };
 
   buildTools = import ./build-tools.nix {
-    inherit (pkgs) stdenv fetchurl unzip zlib file;
+    inherit (pkgs) stdenv fetchurl unzip zlib file coreutils;
     stdenv_32bit = pkgs_i686.stdenv;
     zlib_32bit = pkgs_i686.zlib;
     ncurses_32bit = pkgs_i686.ncurses5;

From ec8f320797e37750fbf0eae2bd5cc9fac4542b78 Mon Sep 17 00:00:00 2001
From: Nick Novitski <nick@expo.io>
Date: Tue, 23 Oct 2018 08:12:32 -0700
Subject: [PATCH 0047/1129] androidenv.androidndk: patch prebuilt 64bit
 binaries

---
 pkgs/development/mobile/androidenv/androidndk.nix | 10 ++++++++++
 1 file changed, 10 insertions(+)

diff --git a/pkgs/development/mobile/androidenv/androidndk.nix b/pkgs/development/mobile/androidenv/androidndk.nix
index 072a6dc3168e..23ae4378dc68 100644
--- a/pkgs/development/mobile/androidenv/androidndk.nix
+++ b/pkgs/development/mobile/androidenv/androidndk.nix
@@ -89,6 +89,16 @@ let
       do
           wrapProgram "$(pwd)/$i" --prefix PATH : "${runtime_paths}"
       done
+
+      ${stdenv.lib.optionalString (stdenv.hostPlatform.system == "x86_64-linux") ''
+        for i in ${pkg_path}/prebuilt/linux-x86_64/bin/*
+        do
+            if ! isELF $i; then continue; fi
+            patchelf --set-interpreter ${stdenv.cc.libc.out}/lib/ld-linux-x86-64.so.2 $i
+            patchelf --set-rpath ${stdenv.cc.cc.lib}/lib64 $i
+        done
+      ''}
+
       # make some executables available in PATH
       mkdir -pv ${bin_path}
       for i in \

From 6e07691ed702bbaa6b5e18d51a9b055e122786c3 Mon Sep 17 00:00:00 2001
From: Nick Novitski <nick@expo.io>
Date: Wed, 24 Oct 2018 15:38:52 -0700
Subject: [PATCH 0048/1129] androidenv: remove `android` command from fetch.sh

It's deprecated, and no longer prints the urls of any xml files for the script
to parse.
---
 pkgs/development/mobile/androidenv/fetch.sh | 5 +----
 1 file changed, 1 insertion(+), 4 deletions(-)

diff --git a/pkgs/development/mobile/androidenv/fetch.sh b/pkgs/development/mobile/androidenv/fetch.sh
index 2edbe6bf4898..102f6aafb89e 100755
--- a/pkgs/development/mobile/androidenv/fetch.sh
+++ b/pkgs/development/mobile/androidenv/fetch.sh
@@ -1,8 +1,5 @@
 #! /usr/bin/env nix-shell
-#! nix-shell -i bash --pure -p androidsdk curl libxslt
-
-# this shows a list of available xmls
-android list sdk | grep 'Parse XML:' | cut -f8- -d\  # | xargs -n 1 curl -O
+#! nix-shell -i bash --pure -p curl libxslt
 
 # we skip the intel addons, as they are Windows+osX only
 # we skip the default sys-img (arm?) because it is empty

From a61f31cf23300dea260c95ea5d20e755d1b0914f Mon Sep 17 00:00:00 2001
From: Nick Novitski <nick@expo.io>
Date: Wed, 24 Oct 2018 14:50:11 -0700
Subject: [PATCH 0049/1129] androidenv: run ./fetch.sh

Manually corrected three problems:
- fetch.sh: android cli cannot find java executable
- addons.nix: google_apis_25 expression not added correctly
- addons.nix: android_support_extra expression deleted (replaced in android 9 with jetpack/androidx)
---
 pkgs/development/mobile/androidenv/addon.xml  | 132 ++-
 pkgs/development/mobile/androidenv/addons.nix |   9 +-
 .../mobile/androidenv/platforms-linux.nix     |  24 +
 .../mobile/androidenv/platforms-macosx.nix    |  24 +
 .../mobile/androidenv/repository-11.xml       | 852 ++++++++++++++----
 .../development/mobile/androidenv/sources.nix |  33 +
 .../development/mobile/androidenv/sys-img.xml | 239 +++--
 .../mobile/androidenv/sysimages.nix           |  73 +-
 8 files changed, 1043 insertions(+), 343 deletions(-)

diff --git a/pkgs/development/mobile/androidenv/addon.xml b/pkgs/development/mobile/androidenv/addon.xml
index 1bc1d110db16..68792038d000 100644
--- a/pkgs/development/mobile/androidenv/addon.xml
+++ b/pkgs/development/mobile/androidenv/addon.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" ?>
 <sdk:sdk-addon xmlns:sdk="http://schemas.android.com/sdk/android/addon/7" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
-	<!--Generated on 2017-09-08 08:19:28.153828 with ADRT.-->
+	<!--Generated on 2018-09-27 12:07:52.862255 with ADRT.-->
 	<sdk:license id="android-sdk-license" type="text">Terms and Conditions
 
 This is the Android Software Development Kit License Agreement
@@ -35,7 +35,7 @@ This is the Android Software Development Kit License Agreement
 
 3.3 You agree that Google or third parties own all legal right, title and interest in and to the SDK, including any Intellectual Property Rights that subsist in the SDK. &quot;Intellectual Property Rights&quot; means any and all rights under patent law, copyright law, trade secret law, trademark law, and any and all other proprietary rights. Google reserves all rights not expressly granted to you.
 
-3.4 You may not use the SDK for any purpose not expressly permitted by the License Agreement.  Except to the extent required by applicable third party licenses, you may not: (a) copy (except for backup purposes), modify, adapt, redistribute, decompile, reverse engineer, disassemble, or create derivative works of the SDK or any part of the SDK; or (b) load any part of the SDK onto a mobile handset or any other hardware device except a personal computer, combine any part of the SDK with other software, or distribute any software or device incorporating a part of the SDK.
+3.4 You may not use the SDK for any purpose not expressly permitted by the License Agreement.  Except to the extent required by applicable third party licenses, you may not copy (except for backup purposes), modify, adapt, redistribute, decompile, reverse engineer, disassemble, or create derivative works of the SDK or any part of the SDK.
 
 3.5 Use, reproduction and distribution of components of the SDK licensed under an open source software license are governed solely by the terms of that open source software license and not the License Agreement.
 
@@ -587,7 +587,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>3</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:49 2016.-->
+				<!--Built on: Sat May 19 22:41:19 2018.-->
 				<sdk:size>34908058</sdk:size>
 				<sdk:checksum type="sha1">1f92abf3a76be66ae8032257fc7620acbd2b2e3a</sdk:checksum>
 				<sdk:url>google_apis-3-r03.zip</sdk:url>
@@ -614,7 +614,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>2</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:49 2016.-->
+				<!--Built on: Sun Jun  3 14:03:04 2018.-->
 				<sdk:size>42435735</sdk:size>
 				<sdk:checksum type="sha1">9b6e86d8568558de4d606a7debc4f6049608dbd0</sdk:checksum>
 				<sdk:url>google_apis-4_r02.zip</sdk:url>
@@ -641,7 +641,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>1</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:51 2016.-->
+				<!--Built on: Tue Jun  5 17:50:33 2018.-->
 				<sdk:size>49123776</sdk:size>
 				<sdk:checksum type="sha1">46eaeb56b645ee7ffa24ede8fa17f3df70db0503</sdk:checksum>
 				<sdk:url>google_apis-5_r01.zip</sdk:url>
@@ -668,7 +668,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>1</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:51 2016.-->
+				<!--Built on: Sun Jun 10 12:37:49 2018.-->
 				<sdk:size>53382941</sdk:size>
 				<sdk:checksum type="sha1">5ff545d96e031e09580a6cf55713015c7d4936b2</sdk:checksum>
 				<sdk:url>google_apis-6_r01.zip</sdk:url>
@@ -695,7 +695,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>1</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:52 2016.-->
+				<!--Built on: Wed May 30 22:32:20 2018.-->
 				<sdk:size>53691339</sdk:size>
 				<sdk:checksum type="sha1">2e7f91e0fe34fef7f58aeced973c6ae52361b5ac</sdk:checksum>
 				<sdk:url>google_apis-7_r01.zip</sdk:url>
@@ -722,7 +722,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>2</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:52 2016.-->
+				<!--Built on: Mon Jun 11 03:39:55 2018.-->
 				<sdk:size>59505020</sdk:size>
 				<sdk:checksum type="sha1">3079958e7ec87222cac1e6b27bc471b27bf2c352</sdk:checksum>
 				<sdk:url>google_apis-8_r02.zip</sdk:url>
@@ -749,7 +749,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>2</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:50 2016.-->
+				<!--Built on: Wed May 23 15:52:14 2018.-->
 				<sdk:size>63401546</sdk:size>
 				<sdk:checksum type="sha1">78664645a1e9accea4430814f8694291a7f1ea5d</sdk:checksum>
 				<sdk:url>google_apis-9_r02.zip</sdk:url>
@@ -776,7 +776,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>2</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:52 2016.-->
+				<!--Built on: Tue May 29 03:55:38 2018.-->
 				<sdk:size>65781578</sdk:size>
 				<sdk:checksum type="sha1">cc0711857c881fa7534f90cf8cc09b8fe985484d</sdk:checksum>
 				<sdk:url>google_apis-10_r02.zip</sdk:url>
@@ -807,7 +807,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>1</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:54 2016.-->
+				<!--Built on: Thu Jun 14 15:13:30 2018.-->
 				<sdk:size>83477179</sdk:size>
 				<sdk:checksum type="sha1">5eab5e81addee9f3576d456d205208314b5146a5</sdk:checksum>
 				<sdk:url>google_apis-11_r01.zip</sdk:url>
@@ -834,7 +834,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>1</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:51 2016.-->
+				<!--Built on: Mon Jun 11 10:52:20 2018.-->
 				<sdk:size>86099835</sdk:size>
 				<sdk:checksum type="sha1">e9999f4fa978812174dfeceec0721c793a636e5d</sdk:checksum>
 				<sdk:url>google_apis-12_r01.zip</sdk:url>
@@ -865,7 +865,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>1</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:54 2016.-->
+				<!--Built on: Sun May 27 03:09:43 2018.-->
 				<sdk:size>88615525</sdk:size>
 				<sdk:checksum type="sha1">3b153edd211c27dc736c893c658418a4f9041417</sdk:checksum>
 				<sdk:url>google_apis-13_r01.zip</sdk:url>
@@ -896,7 +896,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>2</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:53 2016.-->
+				<!--Built on: Wed Jun 13 22:44:43 2018.-->
 				<sdk:size>106533714</sdk:size>
 				<sdk:checksum type="sha1">f8eb4d96ad0492b4c0db2d7e4f1a1a3836664d39</sdk:checksum>
 				<sdk:url>google_apis-14_r02.zip</sdk:url>
@@ -925,7 +925,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>3</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:54 2016.-->
+				<!--Built on: Fri Jun 15 19:37:58 2018.-->
 				<sdk:size>106624396</sdk:size>
 				<sdk:checksum type="sha1">d0d2bf26805eb271693570a1aaec33e7dc3f45e9</sdk:checksum>
 				<sdk:url>google_apis-15_r03.zip</sdk:url>
@@ -958,7 +958,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>4</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:54 2016.-->
+				<!--Built on: Sun Jun 10 20:07:39 2018.-->
 				<sdk:size>127341982</sdk:size>
 				<sdk:checksum type="sha1">ee6acf1b01020bfa8a8e24725dbc4478bee5e792</sdk:checksum>
 				<sdk:url>google_apis-16_r04.zip</sdk:url>
@@ -991,7 +991,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>4</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:55 2016.-->
+				<!--Built on: Wed May 30 17:17:51 2018.-->
 				<sdk:size>137231243</sdk:size>
 				<sdk:checksum type="sha1">a076be0677f38df8ca5536b44dfb411a0c808c4f</sdk:checksum>
 				<sdk:url>google_apis-17_r04.zip</sdk:url>
@@ -1024,7 +1024,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>4</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:54 2016.-->
+				<!--Built on: Sun May 27 23:13:56 2018.-->
 				<sdk:size>143195183</sdk:size>
 				<sdk:checksum type="sha1">6109603409debdd40854d4d4a92eaf8481462c8b</sdk:checksum>
 				<sdk:url>google_apis-18_r04.zip</sdk:url>
@@ -1057,7 +1057,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>20</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 04:16:31 2016.-->
+				<!--Built on: Sat Jun  2 14:21:02 2018.-->
 				<sdk:size>147081</sdk:size>
 				<sdk:checksum type="sha1">5b933abe830b2f25b4c0f171d45e9e0651e56311</sdk:checksum>
 				<sdk:url>google_apis-19_r20.zip</sdk:url>
@@ -1090,7 +1090,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>1</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Sep  8 15:11:39 2016.-->
+				<!--Built on: Fri Jun  1 04:12:18 2018.-->
 				<sdk:size>154865</sdk:size>
 				<sdk:checksum type="sha1">31361c2868f27343ee917fbd259c1463821b6145</sdk:checksum>
 				<sdk:url>google_apis-24_r1.zip</sdk:url>
@@ -1123,7 +1123,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>1</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue Apr 25 23:37:40 2017.-->
+				<!--Built on: Tue Jun 12 20:09:06 2018.-->
 				<sdk:size>154871</sdk:size>
 				<sdk:checksum type="sha1">550e83eea9513ab11c44919ac6da54b36084a9f3</sdk:checksum>
 				<sdk:url>google_apis-25_r1.zip</sdk:url>
@@ -1156,7 +1156,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>1</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:45 2016.-->
+				<!--Built on: Mon Jun 11 05:08:59 2018.-->
 				<sdk:size>179499</sdk:size>
 				<sdk:checksum type="sha1">66a754efb24e9bb07cc51648426443c7586c9d4a</sdk:checksum>
 				<sdk:url>google_apis-21_r01.zip</sdk:url>
@@ -1189,7 +1189,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>1</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:45 2016.-->
+				<!--Built on: Fri Jun 15 06:11:24 2018.-->
 				<sdk:size>179259</sdk:size>
 				<sdk:checksum type="sha1">5def0f42160cba8acff51b9c0c7e8be313de84f5</sdk:checksum>
 				<sdk:url>google_apis-22_r01.zip</sdk:url>
@@ -1222,7 +1222,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>1</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:45 2016.-->
+				<!--Built on: Sun Jun 10 08:57:09 2018.-->
 				<sdk:size>179900</sdk:size>
 				<sdk:checksum type="sha1">04c5cc1a7c88967250ebba9561d81e24104167db</sdk:checksum>
 				<sdk:url>google_apis-23_r01.zip</sdk:url>
@@ -1256,7 +1256,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>2</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:54 2016.-->
+				<!--Built on: Sun May 27 03:16:19 2018.-->
 				<sdk:size>78266751</sdk:size>
 				<sdk:checksum type="sha1">92128a12e7e8b0fb5bac59153d7779b717e7b840</sdk:checksum>
 				<sdk:url>google_tv-12_r02.zip</sdk:url>
@@ -1278,7 +1278,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:revision>1</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Aug 15 05:06:54 2016.-->
+				<!--Built on: Tue Jun 19 05:04:20 2018.-->
 				<sdk:size>87721879</sdk:size>
 				<sdk:checksum type="sha1">b73f7c66011ac8180b44aa4e83b8d78c66ea9a09</sdk:checksum>
 				<sdk:url>google_tv-13_r01.zip</sdk:url>
@@ -1303,7 +1303,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Wed Mar 22 18:05:52 2017.-->
+				<!--Built on: Mon Jun 11 04:51:54 2018.-->
 				<sdk:size>355529608</sdk:size>
 				<sdk:checksum type="sha1">a0d22beacc106a6977321f2b07d692ce4979e96a</sdk:checksum>
 				<sdk:url>android_m2repository_r47.zip</sdk:url>
@@ -1323,7 +1323,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Wed Sep  6 06:12:47 2017.-->
+				<!--Built on: Mon Jun 11 11:10:27 2018.-->
 				<sdk:size>215426029</sdk:size>
 				<sdk:checksum type="sha1">05086add9e3a0eb1b67111108d7757a4337c3f10</sdk:checksum>
 				<sdk:url>google_m2repository_gms_v11_3_rc05_wear_2_0_5.zip</sdk:url>
@@ -1343,7 +1343,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue Apr  5 11:38:56 2016.-->
+				<!--Built on: Sun Jun 10 01:20:16 2018.-->
 				<sdk:size>75109</sdk:size>
 				<sdk:checksum type="sha1">355e8dc304a92a5616db235af8ee7bd554356254</sdk:checksum>
 				<sdk:url>market_licensing-r02.zip</sdk:url>
@@ -1364,7 +1364,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue Apr  5 11:38:59 2016.-->
+				<!--Built on: Sun Jun 17 19:31:02 2018.-->
 				<sdk:size>110201</sdk:size>
 				<sdk:checksum type="sha1">5305399dc1a56814e86b8459ce24871916f78b8c</sdk:checksum>
 				<sdk:url>market_apk_expansion-r03.zip</sdk:url>
@@ -1386,7 +1386,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue Apr  5 11:39:02 2016.-->
+				<!--Built on: Sun May 27 10:44:16 2018.-->
 				<sdk:size>5265389</sdk:size>
 				<sdk:checksum type="sha1">92558dbc380bba3d55d0ec181167fb05ce7c79d9</sdk:checksum>
 				<sdk:url>google_play_services_3265130_r12.zip</sdk:url>
@@ -1401,16 +1401,16 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:path>google_play_services_froyo</sdk:path>
 	</sdk:extra>
 	<sdk:extra>
-		<!--Generated from bid:164902609, branch:perforce-->
+		<!--Generated from bid:189640690, branch:perforce-->
 		<sdk:revision>
-			<sdk:major>44</sdk:major>
+			<sdk:major>49</sdk:major>
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Aug 10 14:27:42 2017.-->
-				<sdk:size>13796755</sdk:size>
-				<sdk:checksum type="sha1">d2bb583a3f62b068d448df10544c1852d910526f</sdk:checksum>
-				<sdk:url>google_play_services_v12_1_rc11.zip</sdk:url>
+				<!--Built on: Mon Jun 11 08:08:54 2018.-->
+				<sdk:size>15456884</sdk:size>
+				<sdk:checksum type="sha1">f95bf19634e2ab0430923247fe2c50246432d2e9</sdk:checksum>
+				<sdk:url>google_play_services_v16_1_rc09.zip</sdk:url>
 			</sdk:archive>
 		</sdk:archives>
 		<sdk:uses-license ref="android-sdk-license"/>
@@ -1428,7 +1428,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue Apr  5 11:39:08 2016.-->
+				<!--Built on: Thu Jun  7 01:53:27 2018.-->
 				<sdk:size>8682859</sdk:size>
 				<sdk:checksum type="sha1">dc8a2ed2fbd7246d4caf9ab10ffe7749dc35d1cc</sdk:checksum>
 				<sdk:url>usb_driver_r11-windows.zip</sdk:url>
@@ -1443,28 +1443,6 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:name-display>Google USB Driver</sdk:name-display>
 		<sdk:path>usb_driver</sdk:path>
 	</sdk:extra>
-	<sdk:extra>
-		<!--Generated from bid:53928043, branch:perforce-->
-		<sdk:revision>
-			<sdk:major>5</sdk:major>
-		</sdk:revision>
-		<sdk:archives>
-			<sdk:archive>
-				<!--Built on: Tue Apr  5 11:39:11 2016.-->
-				<sdk:size>436654</sdk:size>
-				<sdk:checksum type="sha1">bd2ac5ce7127070ac3229003eb69cfb806628ac9</sdk:checksum>
-				<sdk:url>play_billing_r05.zip</sdk:url>
-			</sdk:archive>
-		</sdk:archives>
-		<sdk:uses-license ref="android-sdk-license"/>
-		<sdk:vendor-id>google</sdk:vendor-id>
-		<sdk:vendor-display>Google Inc.</sdk:vendor-display>
-		<sdk:description>Google Play Billing files and sample code</sdk:description>
-		<sdk:desc-url>http://developer.android.com/google/play/billing/index.html</sdk:desc-url>
-		<sdk:name-display>Google Play Billing Library</sdk:name-display>
-		<sdk:path>play_billing</sdk:path>
-		<sdk:old-paths>market_billing</sdk:old-paths>
-	</sdk:extra>
 	<sdk:extra>
 		<!--Generated from bid:45484492, branch:perforce-->
 		<sdk:obsolete/>
@@ -1473,7 +1451,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue Apr  5 11:39:14 2016.-->
+				<!--Built on: Thu Jun  7 11:48:51 2018.-->
 				<sdk:size>704512</sdk:size>
 				<sdk:checksum type="sha1">0102859d9575baa0bf4fd5eb422af2ad0fe6cb82</sdk:checksum>
 				<sdk:url>GoogleAdMobAdsSdkAndroid-6.4.1.zip</sdk:url>
@@ -1495,7 +1473,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue Apr  5 11:39:17 2016.-->
+				<!--Built on: Tue Jun  5 05:29:27 2018.-->
 				<sdk:size>211432</sdk:size>
 				<sdk:checksum type="sha1">dc14026bf0ce78315cb5dd00552607de0894de83</sdk:checksum>
 				<sdk:url>GoogleAnalyticsAndroid_2.0beta5.zip</sdk:url>
@@ -1516,7 +1494,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue Apr  5 11:39:20 2016.-->
+				<!--Built on: Thu May 31 20:21:33 2018.-->
 				<sdk:size>4055193</sdk:size>
 				<sdk:checksum type="sha1">13f3a3b2670a5fc04a7342861644be9a01b07e38</sdk:checksum>
 				<sdk:url>webdriver_r02.zip</sdk:url>
@@ -1538,7 +1516,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue Apr  5 11:39:23 2016.-->
+				<!--Built on: Sun May 27 10:27:10 2018.-->
 				<sdk:size>5901400</sdk:size>
 				<sdk:checksum type="sha1">ad066fd0dc7fc99d8aadac09c65a3c2519fbc7bf</sdk:checksum>
 				<sdk:url>gcm_r03.zip</sdk:url>
@@ -1559,7 +1537,7 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue Apr  5 11:39:26 2016.-->
+				<!--Built on: Tue Jun  5 14:06:56 2018.-->
 				<sdk:size>2167286</sdk:size>
 				<sdk:checksum type="sha1">4fb5344e34e8faab4db18af07dace44c50db26a7</sdk:checksum>
 				<sdk:url>simulator_r01.zip</sdk:url>
@@ -1581,21 +1559,21 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue Apr  5 11:39:34 2016.-->
+				<!--Built on: Sat Jun 16 20:44:31 2018.-->
 				<sdk:size>1346009</sdk:size>
 				<sdk:checksum type="sha1">202a6e1b3009a0eb815f8c672d2d5b3717de6169</sdk:checksum>
 				<sdk:url>desktop-head-unit-linux_r01.1.zip</sdk:url>
 				<sdk:host-os>linux</sdk:host-os>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Tue Apr  5 11:39:35 2016.-->
+				<!--Built on: Tue Jun 12 06:56:07 2018.-->
 				<sdk:size>2375533</sdk:size>
 				<sdk:checksum type="sha1">8179cbb3914493ebc5eb65b731cba061582f2e84</sdk:checksum>
 				<sdk:url>desktop-head-unit-macosx_r01.1.zip</sdk:url>
 				<sdk:host-os>macosx</sdk:host-os>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Tue Apr  5 11:39:34 2016.-->
+				<!--Built on: Tue Jun 12 13:47:09 2018.-->
 				<sdk:size>2691901</sdk:size>
 				<sdk:checksum type="sha1">99c4a7172d73673552119347bc24c58b47da177b</sdk:checksum>
 				<sdk:url>desktop-head-unit-windows_r01.1.zip</sdk:url>
@@ -1611,26 +1589,26 @@ THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS &quot;AS IS&
 		<sdk:path>auto</sdk:path>
 	</sdk:extra>
 	<sdk:extra>
-		<!--Generated from bid:155747253, branch:perforce-->
+		<!--Generated from bid:214678223, branch:perforce-->
 		<sdk:revision>
 			<sdk:major>1</sdk:major>
-			<sdk:minor>0</sdk:minor>
+			<sdk:minor>5</sdk:minor>
 			<sdk:micro>0</sdk:micro>
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu May 11 08:10:37 2017.-->
-				<sdk:size>450468876</sdk:size>
-				<sdk:checksum type="sha1">50074a0f0312ee1d0d81d2cddc3d84a8a9e97a53</sdk:checksum>
-				<sdk:url>aiasdk-1.0.0.zip</sdk:url>
+				<!--Built on: Wed Sep 26 15:20:22 2018.-->
+				<sdk:size>33351418</sdk:size>
+				<sdk:checksum type="sha1">6c282b9c686e819fe7f5ac8f2249d2479acb63b4</sdk:checksum>
+				<sdk:url>iasdk-1.5.0-1538000167.zip</sdk:url>
 			</sdk:archive>
 		</sdk:archives>
 		<sdk:uses-license ref="android-sdk-license"/>
 		<sdk:vendor-id>google</sdk:vendor-id>
 		<sdk:vendor-display>Google Inc.</sdk:vendor-display>
-		<sdk:description>Android Instant Apps Development SDK</sdk:description>
-		<sdk:desc-url>https://developer.android.com/topic/instant-apps/index.html</sdk:desc-url>
-		<sdk:name-display>Instant Apps Development SDK</sdk:name-display>
+		<sdk:description>Google Play Instant Development SDK</sdk:description>
+		<sdk:desc-url>https://developer.android.com/topic/google-play-instant/</sdk:desc-url>
+		<sdk:name-display>Google Play Instant Development SDK</sdk:name-display>
 		<sdk:path>instantapps</sdk:path>
 	</sdk:extra>
 </sdk:sdk-addon>
diff --git a/pkgs/development/mobile/androidenv/addons.nix b/pkgs/development/mobile/androidenv/addons.nix
index ab5d570a3273..1a8e2d32a4bb 100644
--- a/pkgs/development/mobile/androidenv/addons.nix
+++ b/pkgs/development/mobile/androidenv/addons.nix
@@ -296,8 +296,8 @@ in
   google_play_services = buildGoogleApis {
     name = "google_play_services";
     src = fetchurl {
-      url = https://dl.google.com/android/repository/google_play_services_v12_1_rc11.zip;
-      sha1 = "d2bb583a3f62b068d448df10544c1852d910526f";
+      url = https://dl.google.com/android/repository/google_play_services_v16_1_rc09.zip;
+      sha1 = "f95bf19634e2ab0430923247fe2c50246432d2e9";
     };
     meta = {
       description = "Google Play services client library and sample code";
@@ -308,8 +308,8 @@ in
   instant_apps = buildGoogleApis {
     name = "instant_apps_sdk";
     src = fetchurl {
-      url = https://dl.google.com/android/repository/aiasdk-1.0.0.zip;
-      sha1 = "50074a0f0312ee1d0d81d2cddc3d84a8a9e97a53";
+      url = https://dl.google.com/android/repository/iasdk-1.5.0-1538000167.zip;
+      sha1 = "6c282b9c686e819fe7f5ac8f2249d2479acb63b4";
     };
     meta = {
       description = "Android Instant Apps Development SDK";
@@ -317,4 +317,5 @@ in
     };
   };
 
+
 }
diff --git a/pkgs/development/mobile/androidenv/platforms-linux.nix b/pkgs/development/mobile/androidenv/platforms-linux.nix
index e24a9c431602..dbb295f8cf55 100644
--- a/pkgs/development/mobile/androidenv/platforms-linux.nix
+++ b/pkgs/development/mobile/androidenv/platforms-linux.nix
@@ -316,4 +316,28 @@ in
     };
   };
 
+  platform_27 = buildPlatform {
+    name = "android-platform-8.1.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/platform-27_r03.zip;
+      sha1 = "35f747e7e70b2d16e0e4246876be28d15ea1c353";
+    };
+    meta = {
+      description = "Android SDK Platform 27";
+      homepage = http://developer.android.com/sdk/;
+    };
+  };
+
+  platform_28 = buildPlatform {
+    name = "android-platform-9";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/platform-28_r06.zip;
+      sha1 = "9a4e52b1d55bd2e24216b150aafae2503d3efba6";
+    };
+    meta = {
+      description = "Android SDK Platform 28";
+      homepage = http://developer.android.com/sdk/;
+    };
+  };
+
 }
diff --git a/pkgs/development/mobile/androidenv/platforms-macosx.nix b/pkgs/development/mobile/androidenv/platforms-macosx.nix
index 3775872514ca..30ed94e516a2 100644
--- a/pkgs/development/mobile/androidenv/platforms-macosx.nix
+++ b/pkgs/development/mobile/androidenv/platforms-macosx.nix
@@ -316,4 +316,28 @@ in
     };
   };
 
+  platform_27 = buildPlatform {
+    name = "android-platform-8.1.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/platform-27_r03.zip;
+      sha1 = "35f747e7e70b2d16e0e4246876be28d15ea1c353";
+    };
+    meta = {
+      description = "Android SDK Platform 27";
+      homepage = http://developer.android.com/sdk/;
+    };
+  };
+
+  platform_28 = buildPlatform {
+    name = "android-platform-9";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/platform-28_r06.zip;
+      sha1 = "9a4e52b1d55bd2e24216b150aafae2503d3efba6";
+    };
+    meta = {
+      description = "Android SDK Platform 28";
+      homepage = http://developer.android.com/sdk/;
+    };
+  };
+
 }
diff --git a/pkgs/development/mobile/androidenv/repository-11.xml b/pkgs/development/mobile/androidenv/repository-11.xml
index 3924d6ddd3b6..45ad16be57b0 100644
--- a/pkgs/development/mobile/androidenv/repository-11.xml
+++ b/pkgs/development/mobile/androidenv/repository-11.xml
@@ -15,7 +15,7 @@
  * limitations under the License.
 -->
 <sdk:sdk-repository xmlns:sdk="http://schemas.android.com/sdk/android/repository/11" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
-	<!--Generated on 2017-09-08 08:20:34.788412 with ADRT.-->
+	<!--Generated on 2018-10-17 16:21:19.063228 with ADRT.-->
 	<sdk:license id="android-sdk-license" type="text">Terms and Conditions
 
 This is the Android Software Development Kit License Agreement
@@ -50,7 +50,7 @@ This is the Android Software Development Kit License Agreement
 
 3.3 You agree that Google or third parties own all legal right, title and interest in and to the SDK, including any Intellectual Property Rights that subsist in the SDK. &quot;Intellectual Property Rights&quot; means any and all rights under patent law, copyright law, trade secret law, trademark law, and any and all other proprietary rights. Google reserves all rights not expressly granted to you.
 
-3.4 You may not use the SDK for any purpose not expressly permitted by the License Agreement.  Except to the extent required by applicable third party licenses, you may not: (a) copy (except for backup purposes), modify, adapt, redistribute, decompile, reverse engineer, disassemble, or create derivative works of the SDK or any part of the SDK; or (b) load any part of the SDK onto a mobile handset or any other hardware device except a personal computer, combine any part of the SDK with other software, or distribute any software or device incorporating a part of the SDK.
+3.4 You may not use the SDK for any purpose not expressly permitted by the License Agreement.  Except to the extent required by applicable third party licenses, you may not copy (except for backup purposes), modify, adapt, redistribute, decompile, reverse engineer, disassemble, or create derivative works of the SDK or any part of the SDK.
 
 3.5 Use, reproduction and distribution of components of the SDK licensed under an open source software license are governed solely by the terms of that open source software license and not the License Agreement.
 
@@ -296,45 +296,93 @@ This is the Android SDK Preview License Agreement (the &quot;License Agreement&q
 
 June 2014.</sdk:license>
 	<sdk:ndk>
-		<!--Generated from bid:4203891, branch:aosp-ndk-r15-release-->
+		<!--Generated from bid:5063045, branch:aosp-ndk-release-r18-->
 		<sdk:description>NDK</sdk:description>
-		<sdk:revision>15</sdk:revision>
+		<sdk:revision>18</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Jul 24 11:35:28 2017.-->
-				<sdk:size>960251267</sdk:size>
-				<sdk:checksum type="sha1">ea4b5d76475db84745aa8828000d009625fc1f98</sdk:checksum>
-				<sdk:url>android-ndk-r15c-darwin-x86_64.zip</sdk:url>
+				<!--Built on: Thu Oct 11 14:06:10 2018.-->
+				<sdk:size>542911996</sdk:size>
+				<sdk:checksum type="sha1">98cb9909aa8c2dab32db188bbdc3ac6207e09440</sdk:checksum>
+				<sdk:url>android-ndk-r18b-darwin-x86_64.zip</sdk:url>
 				<sdk:host-os>macosx</sdk:host-os>
 				<sdk:host-bits>64</sdk:host-bits>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Mon Jul 24 11:35:55 2017.-->
-				<sdk:size>974976754</sdk:size>
-				<sdk:checksum type="sha1">0bf02d4e8b85fd770fd7b9b2cdec57f9441f27a2</sdk:checksum>
-				<sdk:url>android-ndk-r15c-linux-x86_64.zip</sdk:url>
+				<!--Built on: Thu Oct 11 14:06:26 2018.-->
+				<sdk:size>557038702</sdk:size>
+				<sdk:checksum type="sha1">500679655da3a86aecf67007e8ab230ea9b4dd7b</sdk:checksum>
+				<sdk:url>android-ndk-r18b-linux-x86_64.zip</sdk:url>
 				<sdk:host-os>linux</sdk:host-os>
 				<sdk:host-bits>64</sdk:host-bits>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Mon Jul 24 11:34:34 2017.-->
-				<sdk:size>784778144</sdk:size>
-				<sdk:checksum type="sha1">f2e47121feb73ec34ced5e947cbf1adc6b56246e</sdk:checksum>
-				<sdk:url>android-ndk-r15c-windows-x86.zip</sdk:url>
+				<!--Built on: Thu Oct 11 14:05:37 2018.-->
+				<sdk:size>504605336</sdk:size>
+				<sdk:checksum type="sha1">4b8b6a4edc0fa967b429c1d6d25adf69acc28803</sdk:checksum>
+				<sdk:url>android-ndk-r18b-windows-x86.zip</sdk:url>
 				<sdk:host-os>windows</sdk:host-os>
 				<sdk:host-bits>32</sdk:host-bits>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Mon Jul 24 11:35:03 2017.-->
-				<sdk:size>849733996</sdk:size>
-				<sdk:checksum type="sha1">970bb2496de0eada74674bb1b06d79165f725696</sdk:checksum>
-				<sdk:url>android-ndk-r15c-windows-x86_64.zip</sdk:url>
+				<!--Built on: Thu Oct 11 14:05:53 2018.-->
+				<sdk:size>522489470</sdk:size>
+				<sdk:checksum type="sha1">6b6d4138aaaad7166679fdfa4780e177f95cee6f</sdk:checksum>
+				<sdk:url>android-ndk-r18b-windows-x86_64.zip</sdk:url>
 				<sdk:host-os>windows</sdk:host-os>
 				<sdk:host-bits>64</sdk:host-bits>
 			</sdk:archive>
 		</sdk:archives>
 		<sdk:uses-license ref="android-sdk-license"/>
 	</sdk:ndk>
+	<sdk:platform>
+		<!--Generated from bid:4913185, branch:pi-sdk-release-->
+		<sdk:version>9</sdk:version>
+		<sdk:api-level>28</sdk:api-level>
+		<sdk:description>Android SDK Platform 28</sdk:description>
+		<sdk:revision>6</sdk:revision>
+		<sdk:archives>
+			<sdk:archive>
+				<!--Built on: Wed Jul 25 20:19:20 2018.-->
+				<sdk:size>75565084</sdk:size>
+				<sdk:checksum type="sha1">9a4e52b1d55bd2e24216b150aafae2503d3efba6</sdk:checksum>
+				<sdk:url>platform-28_r06.zip</sdk:url>
+			</sdk:archive>
+		</sdk:archives>
+		<sdk:uses-license ref="android-sdk-license"/>
+		<sdk:min-tools-rev>
+			<sdk:major>22</sdk:major>
+		</sdk:min-tools-rev>
+		<sdk:desc-url>http://developer.android.com/sdk/</sdk:desc-url>
+		<sdk:layoutlib>
+			<sdk:api>15</sdk:api>
+			<sdk:revision>1</sdk:revision>
+		</sdk:layoutlib>
+	</sdk:platform>
+	<sdk:platform>
+		<!--Generated from bid:4774931, branch:git_oc-mr1-sdk-release-->
+		<sdk:version>8.1.0</sdk:version>
+		<sdk:api-level>27</sdk:api-level>
+		<sdk:description>Android SDK Platform 27</sdk:description>
+		<sdk:revision>3</sdk:revision>
+		<sdk:archives>
+			<sdk:archive>
+				<!--Built on: Fri May 11 15:44:04 2018.-->
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+				<sdk:checksum type="sha1">35f747e7e70b2d16e0e4246876be28d15ea1c353</sdk:checksum>
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+		</sdk:archives>
+		<sdk:uses-license ref="android-sdk-license"/>
+		<sdk:min-tools-rev>
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+		</sdk:min-tools-rev>
+		<sdk:desc-url>http://developer.android.com/sdk/</sdk:desc-url>
+		<sdk:layoutlib>
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+			<sdk:revision>1</sdk:revision>
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 	<sdk:platform>
 		<!--Generated from bid:4187382, branch:git_oc-release-->
 		<sdk:version>8.0.0</sdk:version>
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 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue Jul 18 10:38:38 2017.-->
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-				<!--Built on: Mon Dec  5 10:12:38 2016.-->
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-				<!--Built on: Mon Aug 22 11:05:39 2016.-->
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-				<!--Built on: Tue Mar 22 14:26:20 2016.-->
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 		<sdk:archives>
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-				<!--Built on: Mon Mar 28 00:57:13 2016.-->
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-				<!--Built on: Mon Mar 28 00:57:12 2016.-->
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-				<!--Built on: Mon Mar 28 00:57:11 2016.-->
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-				<!--Built on: Mon Mar 28 00:57:11 2016.-->
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-				<!--Built on: Mon Mar 28 00:57:10 2016.-->
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-				<!--Built on: Mon Mar 28 00:57:10 2016.-->
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 		<sdk:archives>
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-				<!--Built on: Mon Mar 28 00:57:09 2016.-->
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 		<sdk:revision>1</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue May 24 11:44:04 2016.-->
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 		<sdk:revision>3</sdk:revision>
 		<sdk:archives>
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-				<!--Built on: Tue May 24 11:45:54 2016.-->
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 		<sdk:revision>2</sdk:revision>
 		<sdk:archives>
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-				<!--Built on: Tue May 24 11:45:33 2016.-->
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-				<!--Built on: Mon Mar 28 00:57:15 2016.-->
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-				<!--Built on: Mon Mar 28 00:57:15 2016.-->
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-				<!--Built on: Mon Mar 28 00:57:15 2016.-->
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 		<sdk:archives>
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-				<!--Built on: Mon Mar 28 00:57:13 2016.-->
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-				<!--Built on: Mon Mar 28 00:57:13 2016.-->
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-				<!--Built on: Mon Mar 28 00:57:13 2016.-->
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-				<!--Built on: Mon Mar 28 00:57:17 2016.-->
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-				<!--Built on: Mon Mar 28 00:57:17 2016.-->
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-				<!--Built on: Mon Mar 28 00:57:17 2016.-->
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@@ -931,21 +979,21 @@ June 2014.</sdk:license>
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-				<!--Built on: Mon Mar 28 00:57:14 2016.-->
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 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:57:14 2016.-->
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-				<!--Built on: Mon Mar 28 00:57:14 2016.-->
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 				<sdk:checksum type="sha1">5bb106d2e40d481edd337b0833093843e15fe49a</sdk:checksum>
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@@ -970,21 +1018,21 @@ June 2014.</sdk:license>
 		<sdk:revision>1</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:57:08 2016.-->
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 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:57:08 2016.-->
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-				<!--Built on: Mon Mar 28 00:57:08 2016.-->
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@@ -1000,13 +1048,55 @@ June 2014.</sdk:license>
 			<sdk:api>4</sdk:api>
 		</sdk:layoutlib>
 	</sdk:platform>
+	<sdk:source>
+		<!--Generated from bid:4898911, branch:git_pi-release-->
+		<sdk:api-level>28</sdk:api-level>
+		<sdk:revision>1</sdk:revision>
+		<sdk:archives>
+			<sdk:archive>
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+		</sdk:archives>
+		<sdk:uses-license ref="android-sdk-license"/>
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+	<sdk:source>
+		<!--Generated from bid:4402310, branch:git_oc-mr1-release-->
+		<sdk:api-level>27</sdk:api-level>
+		<sdk:revision>1</sdk:revision>
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+		<sdk:uses-license ref="android-sdk-license"/>
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+	<sdk:source>
+		<!--Generated from bid:4187382, branch:git_oc-release-->
+		<sdk:api-level>26</sdk:api-level>
+		<sdk:revision>1</sdk:revision>
+		<sdk:archives>
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+		<sdk:uses-license ref="android-sdk-license"/>
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 		<!--Generated from bid:3544217, branch:git_nyc-mr1-sdk-dev-->
 		<sdk:api-level>25</sdk:api-level>
 		<sdk:revision>1</sdk:revision>
 		<sdk:archives>
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@@ -1020,7 +1110,7 @@ June 2014.</sdk:license>
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@@ -1034,7 +1124,7 @@ June 2014.</sdk:license>
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 		<sdk:archives>
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 				<sdk:url>build-tools_r19.0.1-macosx.zip</sdk:url>
 				<sdk:host-os>macosx</sdk:host-os>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:57:03 2016.-->
+				<!--Built on: Sun Jun 10 05:45:57 2018.-->
 				<sdk:size>20500648</sdk:size>
 				<sdk:checksum type="sha1">5ef422bac5b28f4ced108319ed4a6bc7050a6234</sdk:checksum>
 				<sdk:url>build-tools_r19.0.1-windows.zip</sdk:url>
@@ -2119,21 +2595,21 @@ June 2014.</sdk:license>
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:57:02 2016.-->
+				<!--Built on: Wed May 30 04:04:22 2018.-->
 				<sdk:size>21339943</sdk:size>
 				<sdk:checksum type="sha1">55c1a6cf632e7d346f0002b275ec41fd3137fd83</sdk:checksum>
 				<sdk:url>build-tools_r19-linux.zip</sdk:url>
 				<sdk:host-os>linux</sdk:host-os>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:57:03 2016.-->
+				<!--Built on: Fri Jun 15 01:37:33 2018.-->
 				<sdk:size>21441270</sdk:size>
 				<sdk:checksum type="sha1">86ec1c12db1bc446b7bcaefc5cc14eb361044e90</sdk:checksum>
 				<sdk:url>build-tools_r19-macosx.zip</sdk:url>
 				<sdk:host-os>macosx</sdk:host-os>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:57:03 2016.-->
+				<!--Built on: Wed Jun  6 05:47:57 2018.-->
 				<sdk:size>20611447</sdk:size>
 				<sdk:checksum type="sha1">6edf505c20f5ece9c48fa0aff9a90488f9654d52</sdk:checksum>
 				<sdk:url>build-tools_r19-windows.zip</sdk:url>
@@ -2152,21 +2628,21 @@ June 2014.</sdk:license>
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:57:02 2016.-->
+				<!--Built on: Thu May 24 00:01:04 2018.-->
 				<sdk:size>20229760</sdk:size>
 				<sdk:checksum type="sha1">68c9acbfc0cec2d51b19efaed39831a17055d998</sdk:checksum>
 				<sdk:url>build-tools_r18.1.1-linux.zip</sdk:url>
 				<sdk:host-os>linux</sdk:host-os>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:57:02 2016.-->
+				<!--Built on: Tue May 22 07:45:01 2018.-->
 				<sdk:size>20452157</sdk:size>
 				<sdk:checksum type="sha1">a9d9d37f6ddf859e57abc78802a77aaa166e48d4</sdk:checksum>
 				<sdk:url>build-tools_r18.1.1-macosx.zip</sdk:url>
 				<sdk:host-os>macosx</sdk:host-os>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:57:02 2016.-->
+				<!--Built on: Sun May 27 16:32:56 2018.-->
 				<sdk:size>19660000</sdk:size>
 				<sdk:checksum type="sha1">c4605066e2f851387ea70bc1442b1968bd7b4a15</sdk:checksum>
 				<sdk:url>build-tools_r18.1.1-windows.zip</sdk:url>
@@ -2185,21 +2661,21 @@ June 2014.</sdk:license>
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:57:01 2016.-->
+				<!--Built on: Mon Jun  4 05:17:04 2018.-->
 				<sdk:size>20229298</sdk:size>
 				<sdk:checksum type="sha1">f314a0599e51397f0886fe888b50dd98f2f050d8</sdk:checksum>
 				<sdk:url>build-tools_r18.1-linux.zip</sdk:url>
 				<sdk:host-os>linux</sdk:host-os>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:57:01 2016.-->
+				<!--Built on: Sun Jun 17 12:29:46 2018.-->
 				<sdk:size>20451524</sdk:size>
 				<sdk:checksum type="sha1">16ddb299b8b43063e5bb3387ec17147c5053dfd8</sdk:checksum>
 				<sdk:url>build-tools_r18.1-macosx.zip</sdk:url>
 				<sdk:host-os>macosx</sdk:host-os>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:57:01 2016.-->
+				<!--Built on: Thu Jun 14 15:56:37 2018.-->
 				<sdk:size>19659547</sdk:size>
 				<sdk:checksum type="sha1">3a9810fc8559ab03c09378f07531e8cae2f1db30</sdk:checksum>
 				<sdk:url>build-tools_r18.1-windows.zip</sdk:url>
@@ -2218,21 +2694,21 @@ June 2014.</sdk:license>
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:57:00 2016.-->
+				<!--Built on: Sun Jun 10 13:17:31 2018.-->
 				<sdk:size>16627330</sdk:size>
 				<sdk:checksum type="sha1">f11618492b0d2270c332325d45d752d3656a9640</sdk:checksum>
 				<sdk:url>build-tools_r18.0.1-linux.zip</sdk:url>
 				<sdk:host-os>linux</sdk:host-os>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:57:00 2016.-->
+				<!--Built on: Mon May 21 16:08:02 2018.-->
 				<sdk:size>16633121</sdk:size>
 				<sdk:checksum type="sha1">d84f5692fb44d60fc53e5b2507cebf9f24626902</sdk:checksum>
 				<sdk:url>build-tools_r18.0.1-macosx.zip</sdk:url>
 				<sdk:host-os>macosx</sdk:host-os>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:57:00 2016.-->
+				<!--Built on: Fri Jun  1 08:16:51 2018.-->
 				<sdk:size>15413527</sdk:size>
 				<sdk:checksum type="sha1">a6c2afd0b6289d589351956d2f5212b37014ca7d</sdk:checksum>
 				<sdk:url>build-tools_r18.0.1-windows.zip</sdk:url>
@@ -2251,21 +2727,21 @@ June 2014.</sdk:license>
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:56:59 2016.-->
+				<!--Built on: Sat Jun  2 14:13:23 2018.-->
 				<sdk:size>11696007</sdk:size>
 				<sdk:checksum type="sha1">2c2872bc3806aabf16a12e3959c2183ddc866e6d</sdk:checksum>
 				<sdk:url>build-tools_r17-linux.zip</sdk:url>
 				<sdk:host-os>linux</sdk:host-os>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:57:00 2016.-->
+				<!--Built on: Tue Jun 19 09:33:42 2018.-->
 				<sdk:size>12208114</sdk:size>
 				<sdk:checksum type="sha1">602ee709be9dbb8f179b1e4075148a57f9419930</sdk:checksum>
 				<sdk:url>build-tools_r17-macosx.zip</sdk:url>
 				<sdk:host-os>macosx</sdk:host-os>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Mon Mar 28 00:57:00 2016.-->
+				<!--Built on: Fri Jun  8 13:26:17 2018.-->
 				<sdk:size>11004914</sdk:size>
 				<sdk:checksum type="sha1">899897d327b0bad492d3a40d3db4d96119c15bc0</sdk:checksum>
 				<sdk:url>build-tools_r17-windows.zip</sdk:url>
@@ -2275,32 +2751,32 @@ June 2014.</sdk:license>
 		<sdk:uses-license ref="android-sdk-license"/>
 	</sdk:build-tool>
 	<sdk:platform-tool>
-		<!--Generated from bid:4062713a, branch:git_oc-preview3-sdk-->
+		<!--Generated from bid:4986621, branch:aosp-sdk-release-->
 		<sdk:revision>
-			<sdk:major>26</sdk:major>
+			<sdk:major>28</sdk:major>
 			<sdk:minor>0</sdk:minor>
-			<sdk:micro>0</sdk:micro>
+			<sdk:micro>1</sdk:micro>
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Fri Jun  2 13:22:20 2017.-->
-				<sdk:size>7771750</sdk:size>
-				<sdk:checksum type="sha1">e75b6137dc444f777eb02f44a6d9819b3aabff82</sdk:checksum>
-				<sdk:url>platform-tools_r26.0.0-darwin.zip</sdk:url>
+				<!--Built on: Fri Aug 31 09:51:45 2018.-->
+				<sdk:size>6848749</sdk:size>
+				<sdk:checksum type="sha1">ed1edad4a48c27655ce98d0a5821e7296e9de145</sdk:checksum>
+				<sdk:url>platform-tools_r28.0.1-darwin.zip</sdk:url>
 				<sdk:host-os>macosx</sdk:host-os>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Fri Jun  2 13:22:19 2017.-->
-				<sdk:size>7859155</sdk:size>
-				<sdk:checksum type="sha1">00de8a6631405b617c10f68cd11ff2e1cd528e23</sdk:checksum>
-				<sdk:url>platform-tools_r26.0.0-linux.zip</sdk:url>
+				<!--Built on: Fri Aug 31 09:51:40 2018.-->
+				<sdk:size>6843966</sdk:size>
+				<sdk:checksum type="sha1">74ff83bc203f01c4f04bd9316ab5a2573f023fd1</sdk:checksum>
+				<sdk:url>platform-tools_r28.0.1-linux.zip</sdk:url>
 				<sdk:host-os>linux</sdk:host-os>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Fri Jun  2 13:22:20 2017.-->
-				<sdk:size>7511554</sdk:size>
-				<sdk:checksum type="sha1">a4128ebc3d1b6372d981810920e3fa01637f891a</sdk:checksum>
-				<sdk:url>platform-tools_r26.0.0-windows.zip</sdk:url>
+				<!--Built on: Fri Aug 31 09:51:43 2018.-->
+				<sdk:size>6183783</sdk:size>
+				<sdk:checksum type="sha1">5a44d10d41725aa718c71b6e44bc2dea6f1a7f49</sdk:checksum>
+				<sdk:url>platform-tools_r28.0.1-windows.zip</sdk:url>
 				<sdk:host-os>windows</sdk:host-os>
 			</sdk:archive>
 		</sdk:archives>
@@ -2315,21 +2791,21 @@ June 2014.</sdk:license>
 		</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Mon Dec 12 17:20:14 2016.-->
+				<!--Built on: Mon May 21 14:06:04 2018.-->
 				<sdk:size>277894900</sdk:size>
 				<sdk:checksum type="sha1">72df3aa1988c0a9003ccdfd7a13a7b8bd0f47fc1</sdk:checksum>
 				<sdk:url>tools_r25.2.5-linux.zip</sdk:url>
 				<sdk:host-os>linux</sdk:host-os>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Mon Dec 12 17:20:09 2016.-->
+				<!--Built on: Thu May 31 17:55:03 2018.-->
 				<sdk:size>200529982</sdk:size>
 				<sdk:checksum type="sha1">d2168d963ac5b616e3d3ddaf21511d084baf3659</sdk:checksum>
 				<sdk:url>tools_r25.2.5-macosx.zip</sdk:url>
 				<sdk:host-os>macosx</sdk:host-os>
 			</sdk:archive>
 			<sdk:archive>
-				<!--Built on: Mon Dec 12 17:20:05 2016.-->
+				<!--Built on: Thu Jun  7 09:09:48 2018.-->
 				<sdk:size>306785944</sdk:size>
 				<sdk:checksum type="sha1">a7f7ebeae1c8d8f62d3a8466e9c81baee7cc31ca</sdk:checksum>
 				<sdk:url>tools_r25.2.5-windows.zip</sdk:url>
@@ -2347,7 +2823,7 @@ June 2014.</sdk:license>
 		<sdk:revision>1</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Sep  8 15:25:04 2016.-->
+				<!--Built on: Thu Jun 14 09:35:24 2018.-->
 				<sdk:size>419477967</sdk:size>
 				<sdk:checksum type="sha1">eef58238949ee9544876cb3e002f2d58e4ee7b5d</sdk:checksum>
 				<sdk:url>docs-24_r01.zip</sdk:url>
diff --git a/pkgs/development/mobile/androidenv/sources.nix b/pkgs/development/mobile/androidenv/sources.nix
index e4fe3cf0ff5d..cca132e27749 100644
--- a/pkgs/development/mobile/androidenv/sources.nix
+++ b/pkgs/development/mobile/androidenv/sources.nix
@@ -148,4 +148,37 @@ in
     };
   };
 
+  source_26 = buildSource {
+    name = "android-source-26";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/sources-26_r01.zip;
+      sha1 = "2af701ee3223d580409288540b1d06932fd8f9b9";
+    };
+    meta = {
+      description = "Source code for Android API 26";
+    };
+  };
+
+  source_27 = buildSource {
+    name = "android-source-27";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/sources-27_r01.zip;
+      sha1 = "7b714670561d08f54751af42aca929867b806596";
+    };
+    meta = {
+      description = "Source code for Android API 27";
+    };
+  };
+
+  source_28 = buildSource {
+    name = "android-source-28";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/sources-28_r01.zip;
+      sha1 = "5610e0c24235ee3fa343c899ddd551be30315255";
+    };
+    meta = {
+      description = "Source code for Android API 28";
+    };
+  };
+
 }
diff --git a/pkgs/development/mobile/androidenv/sys-img.xml b/pkgs/development/mobile/androidenv/sys-img.xml
index 2a720918c23a..d7c8dd9de9b3 100644
--- a/pkgs/development/mobile/androidenv/sys-img.xml
+++ b/pkgs/development/mobile/androidenv/sys-img.xml
@@ -1,6 +1,6 @@
 <?xml version="1.0" ?>
 <sdk:sdk-sys-img xmlns:sdk="http://schemas.android.com/sdk/android/sys-img/3" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance">
-	<!--Generated on 2017-08-28 14:42:29.488243 with ADRT.-->
+	<!--Generated on 2018-09-27 12:07:51.414125 with ADRT.-->
 	<sdk:license id="android-sdk-license" type="text">Terms and Conditions
 
 This is the Android Software Development Kit License Agreement
@@ -35,7 +35,7 @@ This is the Android Software Development Kit License Agreement
 
 3.3 You agree that Google or third parties own all legal right, title and interest in and to the SDK, including any Intellectual Property Rights that subsist in the SDK. &quot;Intellectual Property Rights&quot; means any and all rights under patent law, copyright law, trade secret law, trademark law, and any and all other proprietary rights. Google reserves all rights not expressly granted to you.
 
-3.4 You may not use the SDK for any purpose not expressly permitted by the License Agreement.  Except to the extent required by applicable third party licenses, you may not: (a) copy (except for backup purposes), modify, adapt, redistribute, decompile, reverse engineer, disassemble, or create derivative works of the SDK or any part of the SDK; or (b) load any part of the SDK onto a mobile handset or any other hardware device except a personal computer, combine any part of the SDK with other software, or distribute any software or device incorporating a part of the SDK.
+3.4 You may not use the SDK for any purpose not expressly permitted by the License Agreement.  Except to the extent required by applicable third party licenses, you may not copy (except for backup purposes), modify, adapt, redistribute, decompile, reverse engineer, disassemble, or create derivative works of the SDK or any part of the SDK.
 
 3.5 Use, reproduction and distribution of components of the SDK licensed under an open source software license are governed solely by the terms of that open source software license and not the License Agreement.
 
@@ -411,7 +411,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>4</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Fri Sep 16 16:38:16 2016.-->
+				<!--Built on: Fri Jul 27 08:50:45 2018.-->
 				<sdk:size>67918042</sdk:size>
 				<sdk:checksum type="sha1">54680383118eb5c95a11e1cc2a14aa572c86ee69</sdk:checksum>
 				<sdk:url>armv7-10_r04.zip</sdk:url>
@@ -428,7 +428,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>2</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue Mar 29 18:25:05 2016.-->
+				<!--Built on: Thu Jul 26 20:46:32 2018.-->
 				<sdk:size>99621822</sdk:size>
 				<sdk:checksum type="sha1">d8991b0c06b18d7d6ed4169d67460ee1add6661b</sdk:checksum>
 				<sdk:url>sysimg_armv7a-14_r02.zip</sdk:url>
@@ -445,7 +445,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>4</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Nov 10 17:19:27 2016.-->
+				<!--Built on: Fri Jul 27 08:53:17 2018.-->
 				<sdk:size>102079727</sdk:size>
 				<sdk:checksum type="sha1">363223bd62f5afc0b2bd760b54ce9d26b31eacf1</sdk:checksum>
 				<sdk:url>armeabi-v7a-15_r04.zip</sdk:url>
@@ -462,7 +462,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>4</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue Mar 29 18:24:59 2016.-->
+				<!--Built on: Thu Jul 26 16:01:22 2018.-->
 				<sdk:size>112608076</sdk:size>
 				<sdk:checksum type="sha1">39c093ea755098f0ee79f607be7df9e54ba4943f</sdk:checksum>
 				<sdk:url>sysimg_armv7a-16_r04.zip</sdk:url>
@@ -479,7 +479,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>5</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Nov 10 17:19:54 2016.-->
+				<!--Built on: Fri Jul 27 08:53:02 2018.-->
 				<sdk:size>124238679</sdk:size>
 				<sdk:checksum type="sha1">7460e8110f4a87f9644f1bdb5511a66872d50fd9</sdk:checksum>
 				<sdk:url>armeabi-v7a-17_r05.zip</sdk:url>
@@ -496,7 +496,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>4</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Nov 10 17:20:07 2016.-->
+				<!--Built on: Fri Jul 27 08:53:09 2018.-->
 				<sdk:size>130394401</sdk:size>
 				<sdk:checksum type="sha1">0bf34ecf4ddd53f6b1b7fe7dfa12f2887c17e642</sdk:checksum>
 				<sdk:url>armeabi-v7a-18_r04.zip</sdk:url>
@@ -513,7 +513,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>5</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Nov 10 17:20:23 2016.-->
+				<!--Built on: Fri Jul 27 08:53:25 2018.-->
 				<sdk:size>159871567</sdk:size>
 				<sdk:checksum type="sha1">d1a5fd4f2e1c013c3d3d9bfe7e9db908c3ed56fa</sdk:checksum>
 				<sdk:url>armeabi-v7a-19_r05.zip</sdk:url>
@@ -530,7 +530,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>4</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Fri Sep 16 16:35:34 2016.-->
+				<!--Built on: Fri Jul 27 08:50:26 2018.-->
 				<sdk:size>187163871</sdk:size>
 				<sdk:checksum type="sha1">8c606f81306564b65e41303d2603e4c42ded0d10</sdk:checksum>
 				<sdk:url>armeabi-v7a-21_r04.zip</sdk:url>
@@ -547,7 +547,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>2</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Fri Sep 16 16:35:50 2016.-->
+				<!--Built on: Fri Jul 27 08:50:08 2018.-->
 				<sdk:size>194596267</sdk:size>
 				<sdk:checksum type="sha1">2114ec015dbf3a16cbcb4f63e8a84a1b206a07a1</sdk:checksum>
 				<sdk:url>armeabi-v7a-22_r02.zip</sdk:url>
@@ -564,7 +564,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>6</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Fri Sep 16 16:41:26 2016.-->
+				<!--Built on: Fri Jul 27 08:50:36 2018.-->
 				<sdk:size>238333358</sdk:size>
 				<sdk:checksum type="sha1">7cf2ad756e54a3acfd81064b63cb0cb9dff2798d</sdk:checksum>
 				<sdk:url>armeabi-v7a-23_r06.zip</sdk:url>
@@ -582,7 +582,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>7</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue Sep  6 08:28:18 2016.-->
+				<!--Built on: Fri Jul 27 08:51:39 2018.-->
 				<sdk:size>283677512</sdk:size>
 				<sdk:checksum type="sha1">3454546b4eed2d6c3dd06d47757d6da9f4176033</sdk:checksum>
 				<sdk:url>armeabi-v7a-24_r07.zip</sdk:url>
@@ -599,7 +599,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>7</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue Sep  6 08:28:58 2016.-->
+				<!--Built on: Fri Jul 27 08:51:37 2018.-->
 				<sdk:size>384556503</sdk:size>
 				<sdk:checksum type="sha1">e8ab2e49e4efe4b064232b33b5eeaded61437d7f</sdk:checksum>
 				<sdk:url>arm64-v8a-24_r07.zip</sdk:url>
@@ -609,23 +609,6 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:abi>arm64-v8a</sdk:abi>
 		<sdk:tag-id>default</sdk:tag-id>
 	</sdk:system-image>
-	<sdk:system-image>
-		<!--Generated from bid:1741834, branch:git_ics-mr1-->
-		<sdk:api-level>15</sdk:api-level>
-		<sdk:description>MIPS System Image</sdk:description>
-		<sdk:revision>1</sdk:revision>
-		<sdk:archives>
-			<sdk:archive>
-				<!--Built on: Tue Mar 29 18:24:59 2016.-->
-				<sdk:size>117503178</sdk:size>
-				<sdk:checksum type="sha1">a753bb4a6783124dad726c500ce9aec9d2c1b2d9</sdk:checksum>
-				<sdk:url>sysimg_mips-15_r01.zip</sdk:url>
-			</sdk:archive>
-		</sdk:archives>
-		<sdk:uses-license ref="mips-android-sysimage-license"/>
-		<sdk:abi>mips</sdk:abi>
-		<sdk:tag-id>default</sdk:tag-id>
-	</sdk:system-image>
 	<sdk:system-image>
 		<!--Generated from bid:1741836, branch:git_jb-dev-->
 		<sdk:api-level>16</sdk:api-level>
@@ -633,7 +616,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>1</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue Mar 29 18:25:00 2016.-->
+				<!--Built on: Thu Jul 26 16:01:28 2018.-->
 				<sdk:size>122482530</sdk:size>
 				<sdk:checksum type="sha1">67943c54fb3943943ffeb05fdd39c0b753681f6e</sdk:checksum>
 				<sdk:url>sysimg_mips-16_r04.zip</sdk:url>
@@ -650,7 +633,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>1</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Tue Mar 29 18:25:00 2016.-->
+				<!--Built on: Thu Jul 26 16:01:38 2018.-->
 				<sdk:size>131781761</sdk:size>
 				<sdk:checksum type="sha1">f0c6e153bd584c29e51b5c9723cfbf30f996a05d</sdk:checksum>
 				<sdk:url>sysimg_mips-17_r01.zip</sdk:url>
@@ -667,7 +650,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>4</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Fri Sep 16 16:10:43 2016.-->
+				<!--Built on: Fri Jul 27 08:50:47 2018.-->
 				<sdk:size>75382637</sdk:size>
 				<sdk:checksum type="sha1">655ffc5cc89dd45a3aca154b254009016e473aeb</sdk:checksum>
 				<sdk:url>x86-10_r04.zip</sdk:url>
@@ -684,7 +667,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>4</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Nov 10 17:20:36 2016.-->
+				<!--Built on: Fri Jul 27 08:53:18 2018.-->
 				<sdk:size>115324561</sdk:size>
 				<sdk:checksum type="sha1">e45c728b64881c0e86529a8f7ea9c103a3cd14c1</sdk:checksum>
 				<sdk:url>x86-15_r04.zip</sdk:url>
@@ -695,16 +678,16 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:tag-id>default</sdk:tag-id>
 	</sdk:system-image>
 	<sdk:system-image>
-		<!--Generated from bid:3462064, branch:git_jb-emu-release-->
+		<!--Generated from bid:4875369, branch:git_jb-emu-release-->
 		<sdk:api-level>16</sdk:api-level>
 		<sdk:description>Intel x86 Atom System Image</sdk:description>
-		<sdk:revision>5</sdk:revision>
+		<sdk:revision>6</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Nov 10 17:20:52 2016.-->
-				<sdk:size>134339698</sdk:size>
-				<sdk:checksum type="sha1">7ea16da3a8fdb880b1b290190fcc1bde2821c1e0</sdk:checksum>
-				<sdk:url>x86-16_r05.zip</sdk:url>
+				<!--Built on: Tue Jul 17 16:27:13 2018.-->
+				<sdk:size>134926152</sdk:size>
+				<sdk:checksum type="sha1">bf1bf8c5591346118d2235da1ad20e7be8a3e9cd</sdk:checksum>
+				<sdk:url>x86-16_r06.zip</sdk:url>
 			</sdk:archive>
 		</sdk:archives>
 		<sdk:uses-license ref="android-sdk-license"/>
@@ -712,16 +695,16 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:tag-id>default</sdk:tag-id>
 	</sdk:system-image>
 	<sdk:system-image>
-		<!--Generated from bid:3453820, branch:git_jb-mr1.1-emu-release-->
+		<!--Generated from bid:4875371, branch:git_jb-mr1.1-emu-release-->
 		<sdk:api-level>17</sdk:api-level>
 		<sdk:description>Intel x86 Atom System Image</sdk:description>
-		<sdk:revision>3</sdk:revision>
+		<sdk:revision>4</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Nov 10 17:21:06 2016.-->
-				<sdk:size>142951842</sdk:size>
-				<sdk:checksum type="sha1">eb30274460ff0d61f3ed37862b567811bebd8270</sdk:checksum>
-				<sdk:url>x86-17_r03.zip</sdk:url>
+				<!--Built on: Tue Jul 17 16:30:45 2018.-->
+				<sdk:size>143278662</sdk:size>
+				<sdk:checksum type="sha1">03c6d022ab2dcbbcf655d78ba5ccb0431cadcaec</sdk:checksum>
+				<sdk:url>x86-17_r04.zip</sdk:url>
 			</sdk:archive>
 		</sdk:archives>
 		<sdk:uses-license ref="android-sdk-license"/>
@@ -735,7 +718,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>3</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Nov 10 17:21:19 2016.-->
+				<!--Built on: Fri Jul 27 08:53:12 2018.-->
 				<sdk:size>149657535</sdk:size>
 				<sdk:checksum type="sha1">03a0cb23465c3de15215934a1dbc9715b56e9458</sdk:checksum>
 				<sdk:url>x86-18_r03.zip</sdk:url>
@@ -752,7 +735,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>6</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Jul 13 12:41:20 2017.-->
+				<!--Built on: Wed Jun 13 18:42:22 2018.-->
 				<sdk:size>185886274</sdk:size>
 				<sdk:checksum type="sha1">2ac82153aae97f7eae4c5a0761224fe04321d03d</sdk:checksum>
 				<sdk:url>x86-19_r06.zip</sdk:url>
@@ -769,7 +752,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>5</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Jul 13 12:42:18 2017.-->
+				<!--Built on: Tue May 22 03:41:51 2018.-->
 				<sdk:size>208212529</sdk:size>
 				<sdk:checksum type="sha1">00f0eb0a1003efe3316347f762e20a85d8749cff</sdk:checksum>
 				<sdk:url>x86-21_r05.zip</sdk:url>
@@ -786,7 +769,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>6</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Jul 13 12:43:18 2017.-->
+				<!--Built on: Sun May 20 00:45:19 2018.-->
 				<sdk:size>214268954</sdk:size>
 				<sdk:checksum type="sha1">e33e2a6cc3f1cc56b2019dbef3917d2eeb26f54e</sdk:checksum>
 				<sdk:url>x86-22_r06.zip</sdk:url>
@@ -803,7 +786,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>10</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Jul 13 12:44:25 2017.-->
+				<!--Built on: Tue Jun  5 22:05:27 2018.-->
 				<sdk:size>260804863</sdk:size>
 				<sdk:checksum type="sha1">f6c3e3dd7bd951454795aa75c3a145fd05ac25bb</sdk:checksum>
 				<sdk:url>x86-23_r10.zip</sdk:url>
@@ -820,7 +803,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>8</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Jul 13 12:45:47 2017.-->
+				<!--Built on: Tue May 22 10:30:01 2018.-->
 				<sdk:size>313489224</sdk:size>
 				<sdk:checksum type="sha1">c1cae7634b0216c0b5990f2c144eb8ca948e3511</sdk:checksum>
 				<sdk:url>x86-24_r08.zip</sdk:url>
@@ -830,6 +813,77 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:abi>x86</sdk:abi>
 		<sdk:tag-id>default</sdk:tag-id>
 	</sdk:system-image>
+	<sdk:system-image>
+		<!--Generated from bid:4931657, branch:git_nyc-mr1-emu-release-->
+		<sdk:api-level>25</sdk:api-level>
+		<sdk:description>Intel x86 Atom System Image</sdk:description>
+		<sdk:revision>1</sdk:revision>
+		<sdk:archives>
+			<sdk:archive>
+				<!--Built on: Tue Aug  7 14:04:45 2018.-->
+				<sdk:size>316695942</sdk:size>
+				<sdk:checksum type="sha1">78ce7eb1387d598685633b9f7cbb300c3d3aeb5f</sdk:checksum>
+				<sdk:url>x86-25_r01.zip</sdk:url>
+			</sdk:archive>
+		</sdk:archives>
+		<sdk:uses-license ref="android-sdk-license"/>
+		<sdk:abi>x86</sdk:abi>
+		<sdk:tag-id>default</sdk:tag-id>
+	</sdk:system-image>
+	<sdk:system-image>
+		<!--Generated from bid:4931640, branch:git_oc-emu-release-->
+		<sdk:api-level>26</sdk:api-level>
+		<sdk:description>Intel x86 Atom System Image</sdk:description>
+		<sdk:revision>1</sdk:revision>
+		<sdk:archives>
+			<sdk:archive>
+				<!--Built on: Tue Aug  7 14:05:14 2018.-->
+				<sdk:size>350195807</sdk:size>
+				<sdk:checksum type="sha1">e613d6e0da668e30daf547f3c6627a6352846f90</sdk:checksum>
+				<sdk:url>x86-26_r01.zip</sdk:url>
+			</sdk:archive>
+		</sdk:archives>
+		<sdk:uses-license ref="android-sdk-license"/>
+		<sdk:abi>x86</sdk:abi>
+		<sdk:tag-id>default</sdk:tag-id>
+		<sdk:tag-display>Default Android System Image</sdk:tag-display>
+	</sdk:system-image>
+	<sdk:system-image>
+		<!--Generated from bid:4931629, branch:git_oc-mr1-emu-release-->
+		<sdk:api-level>27</sdk:api-level>
+		<sdk:description>Intel x86 Atom System Image</sdk:description>
+		<sdk:revision>1</sdk:revision>
+		<sdk:archives>
+			<sdk:archive>
+				<!--Built on: Tue Aug  7 14:05:43 2018.-->
+				<sdk:size>360984187</sdk:size>
+				<sdk:checksum type="sha1">4ec990fac7b62958decd12e18a4cd389dfe7c582</sdk:checksum>
+				<sdk:url>x86-27_r01.zip</sdk:url>
+			</sdk:archive>
+		</sdk:archives>
+		<sdk:uses-license ref="android-sdk-license"/>
+		<sdk:abi>x86</sdk:abi>
+		<sdk:tag-id>default</sdk:tag-id>
+		<sdk:tag-display>Default Android System Image</sdk:tag-display>
+	</sdk:system-image>
+	<sdk:system-image>
+		<!--Generated from bid:4923214, branch:git_pi-emu-release-->
+		<sdk:api-level>28</sdk:api-level>
+		<sdk:description>Intel x86 Atom System Image</sdk:description>
+		<sdk:revision>4</sdk:revision>
+		<sdk:archives>
+			<sdk:archive>
+				<!--Built on: Tue Jul 31 17:43:13 2018.-->
+				<sdk:size>437320152</sdk:size>
+				<sdk:checksum type="sha1">ce03c42d80c0fc6dc47f6455dbee7aa275d02780</sdk:checksum>
+				<sdk:url>x86-28_r04.zip</sdk:url>
+			</sdk:archive>
+		</sdk:archives>
+		<sdk:uses-license ref="android-sdk-preview-license"/>
+		<sdk:abi>x86</sdk:abi>
+		<sdk:tag-id>default</sdk:tag-id>
+		<sdk:tag-display>Default Android System Image</sdk:tag-display>
+	</sdk:system-image>
 	<sdk:system-image>
 		<!--Generated from bid:4174711, branch:git_lmp-emu-release-->
 		<sdk:api-level>21</sdk:api-level>
@@ -837,7 +891,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>5</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Jul 13 12:46:57 2017.-->
+				<!--Built on: Wed Jun  6 04:05:38 2018.-->
 				<sdk:size>292623982</sdk:size>
 				<sdk:checksum type="sha1">9078a095825a69e5e215713f0866c83cef65a342</sdk:checksum>
 				<sdk:url>x86_64-21_r05.zip</sdk:url>
@@ -854,7 +908,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>6</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Jul 13 12:48:15 2017.-->
+				<!--Built on: Sun May 27 01:45:29 2018.-->
 				<sdk:size>299976630</sdk:size>
 				<sdk:checksum type="sha1">5db3b27f78cd9c4c5092b1cad5a5dd479fb5b2e4</sdk:checksum>
 				<sdk:url>x86_64-22_r06.zip</sdk:url>
@@ -871,7 +925,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>10</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Jul 13 12:49:37 2017.-->
+				<!--Built on: Tue Jun 12 05:59:42 2018.-->
 				<sdk:size>365009313</sdk:size>
 				<sdk:checksum type="sha1">7cbc291483ca07dc67b71268c5f08a5755f50f51</sdk:checksum>
 				<sdk:url>x86_64-23_r10.zip</sdk:url>
@@ -888,7 +942,7 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:revision>8</sdk:revision>
 		<sdk:archives>
 			<sdk:archive>
-				<!--Built on: Thu Jul 13 12:51:15 2017.-->
+				<!--Built on: Sat Jun 16 05:29:19 2018.-->
 				<sdk:size>419261998</sdk:size>
 				<sdk:checksum type="sha1">f6559e1949a5879f31a9662f4f0e50ad60181684</sdk:checksum>
 				<sdk:url>x86_64-24_r08.zip</sdk:url>
@@ -898,4 +952,75 @@ ANY PRE-RELEASE MATERIALS ARE NON-QUALIFIED AND, AS SUCH, ARE PROVIDED “AS IS
 		<sdk:abi>x86_64</sdk:abi>
 		<sdk:tag-id>default</sdk:tag-id>
 	</sdk:system-image>
+	<sdk:system-image>
+		<!--Generated from bid:4931657, branch:git_nyc-mr1-emu-release-->
+		<sdk:api-level>25</sdk:api-level>
+		<sdk:description>Intel x86 Atom_64 System Image</sdk:description>
+		<sdk:revision>1</sdk:revision>
+		<sdk:archives>
+			<sdk:archive>
+				<!--Built on: Tue Aug  7 14:06:13 2018.-->
+				<sdk:size>422702097</sdk:size>
+				<sdk:checksum type="sha1">7093d7b39216020226ff430a3b7b81c94d31ad37</sdk:checksum>
+				<sdk:url>x86_64-25_r01.zip</sdk:url>
+			</sdk:archive>
+		</sdk:archives>
+		<sdk:uses-license ref="android-sdk-license"/>
+		<sdk:abi>x86_64</sdk:abi>
+		<sdk:tag-id>default</sdk:tag-id>
+	</sdk:system-image>
+	<sdk:system-image>
+		<!--Generated from bid:4931640, branch:git_oc-emu-release-->
+		<sdk:api-level>26</sdk:api-level>
+		<sdk:description>Intel x86 Atom_64 System Image</sdk:description>
+		<sdk:revision>1</sdk:revision>
+		<sdk:archives>
+			<sdk:archive>
+				<!--Built on: Tue Aug  7 14:06:52 2018.-->
+				<sdk:size>474178332</sdk:size>
+				<sdk:checksum type="sha1">432f149c048bffce7f9de526ec65b336daf7a0a3</sdk:checksum>
+				<sdk:url>x86_64-26_r01.zip</sdk:url>
+			</sdk:archive>
+		</sdk:archives>
+		<sdk:uses-license ref="android-sdk-license"/>
+		<sdk:abi>x86_64</sdk:abi>
+		<sdk:tag-id>default</sdk:tag-id>
+		<sdk:tag-display>Default Android System Image</sdk:tag-display>
+	</sdk:system-image>
+	<sdk:system-image>
+		<!--Generated from bid:4931629, branch:git_oc-mr1-emu-release-->
+		<sdk:api-level>27</sdk:api-level>
+		<sdk:description>Intel x86 Atom_64 System Image</sdk:description>
+		<sdk:revision>1</sdk:revision>
+		<sdk:archives>
+			<sdk:archive>
+				<!--Built on: Tue Aug  7 14:07:35 2018.-->
+				<sdk:size>491675204</sdk:size>
+				<sdk:checksum type="sha1">2878261011a59ca3de29dc5b457a495fdb268d60</sdk:checksum>
+				<sdk:url>x86_64-27_r01.zip</sdk:url>
+			</sdk:archive>
+		</sdk:archives>
+		<sdk:uses-license ref="android-sdk-license"/>
+		<sdk:abi>x86_64</sdk:abi>
+		<sdk:tag-id>default</sdk:tag-id>
+		<sdk:tag-display>Default Android System Image</sdk:tag-display>
+	</sdk:system-image>
+	<sdk:system-image>
+		<!--Generated from bid:4923214, branch:git_pi-emu-release-->
+		<sdk:api-level>28</sdk:api-level>
+		<sdk:description>Intel x86 Atom_64 System Image</sdk:description>
+		<sdk:revision>4</sdk:revision>
+		<sdk:archives>
+			<sdk:archive>
+				<!--Built on: Tue Jul 31 17:43:48 2018.-->
+				<sdk:size>564792723</sdk:size>
+				<sdk:checksum type="sha1">d47a85c8f4e9fd57df97814ad8884eeb0f3a0ef0</sdk:checksum>
+				<sdk:url>x86_64-28_r04.zip</sdk:url>
+			</sdk:archive>
+		</sdk:archives>
+		<sdk:uses-license ref="android-sdk-preview-license"/>
+		<sdk:abi>x86_64</sdk:abi>
+		<sdk:tag-id>default</sdk:tag-id>
+		<sdk:tag-display>Default Android System Image</sdk:tag-display>
+	</sdk:system-image>
 </sdk:sdk-sys-img>
diff --git a/pkgs/development/mobile/androidenv/sysimages.nix b/pkgs/development/mobile/androidenv/sysimages.nix
index c5d075d63076..0ad09a025562 100644
--- a/pkgs/development/mobile/androidenv/sysimages.nix
+++ b/pkgs/development/mobile/androidenv/sysimages.nix
@@ -47,14 +47,6 @@ in
     };
   };
 
-  sysimg_mips_15 = buildSystemImage {
-    name = "sysimg-mips-15";
-    src = fetchurl {
-      url = https://dl.google.com/android/repository/sys-img/android/sysimg_mips-15_r01.zip;
-      sha1 = "a753bb4a6783124dad726c500ce9aec9d2c1b2d9";
-    };
-  };
-
   sysimg_x86_15 = buildSystemImage {
     name = "sysimg-x86-15";
     src = fetchurl {
@@ -82,8 +74,8 @@ in
   sysimg_x86_16 = buildSystemImage {
     name = "sysimg-x86-16";
     src = fetchurl {
-      url = https://dl.google.com/android/repository/sys-img/android/x86-16_r05.zip;
-      sha1 = "7ea16da3a8fdb880b1b290190fcc1bde2821c1e0";
+      url = https://dl.google.com/android/repository/sys-img/android/x86-16_r06.zip;
+      sha1 = "bf1bf8c5591346118d2235da1ad20e7be8a3e9cd";
     };
   };
 
@@ -106,8 +98,8 @@ in
   sysimg_x86_17 = buildSystemImage {
     name = "sysimg-x86-17";
     src = fetchurl {
-      url = https://dl.google.com/android/repository/sys-img/android/x86-17_r03.zip;
-      sha1 = "eb30274460ff0d61f3ed37862b567811bebd8270";
+      url = https://dl.google.com/android/repository/sys-img/android/x86-17_r04.zip;
+      sha1 = "03c6d022ab2dcbbcf655d78ba5ccb0431cadcaec";
     };
   };
 
@@ -250,17 +242,64 @@ in
   sysimg_x86_25 = buildSystemImage {
     name = "sysimg-x86-25";
     src = fetchurl {
-      url = https://dl.google.com/android/repository/sys-img/android/x86-25_r03.zip;
-      sha1 = "7dd19cfee4e43a1f60e0f5f058404d92d9544b33";
+      url = https://dl.google.com/android/repository/sys-img/android/x86-25_r01.zip;
+      sha1 = "78ce7eb1387d598685633b9f7cbb300c3d3aeb5f";
     };
   };
 
   sysimg_x86_64_25 = buildSystemImage {
     name = "sysimg-x86_64-25";
     src = fetchurl {
-      url = https://dl.google.com/android/repository/sys-img/android/x86_64-25_r03.zip;
-      sha1 = "4593ee04811df21c339f3374fc5917843db06f8d";
+      url = https://dl.google.com/android/repository/sys-img/android/x86_64-25_r01.zip;
+      sha1 = "7093d7b39216020226ff430a3b7b81c94d31ad37";
+    };
+  };
+
+  sysimg_x86_26 = buildSystemImage {
+    name = "sysimg-x86-26";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/sys-img/android/x86-26_r01.zip;
+      sha1 = "e613d6e0da668e30daf547f3c6627a6352846f90";
+    };
+  };
+
+  sysimg_x86_64_26 = buildSystemImage {
+    name = "sysimg-x86_64-26";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/sys-img/android/x86_64-26_r01.zip;
+      sha1 = "432f149c048bffce7f9de526ec65b336daf7a0a3";
+    };
+  };
+
+  sysimg_x86_27 = buildSystemImage {
+    name = "sysimg-x86-27";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/sys-img/android/x86-27_r01.zip;
+      sha1 = "4ec990fac7b62958decd12e18a4cd389dfe7c582";
+    };
+  };
+
+  sysimg_x86_64_27 = buildSystemImage {
+    name = "sysimg-x86_64-27";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/sys-img/android/x86_64-27_r01.zip;
+      sha1 = "2878261011a59ca3de29dc5b457a495fdb268d60";
+    };
+  };
+
+  sysimg_x86_28 = buildSystemImage {
+    name = "sysimg-x86-28";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/sys-img/android/x86-28_r04.zip;
+      sha1 = "ce03c42d80c0fc6dc47f6455dbee7aa275d02780";
+    };
+  };
+
+  sysimg_x86_64_28 = buildSystemImage {
+    name = "sysimg-x86_64-28";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/sys-img/android/x86_64-28_r04.zip;
+      sha1 = "d47a85c8f4e9fd57df97814ad8884eeb0f3a0ef0";
     };
   };
 }
-

From 4a0ae5d7d69232ced9f47af783d1413c8bd991e5 Mon Sep 17 00:00:00 2001
From: Nick Novitski <nick@expo.io>
Date: Fri, 26 Oct 2018 09:48:25 -0700
Subject: [PATCH 0050/1129] androidenv: add androidsdk_{8_1,9_0}{,_extras}

---
 .../development/mobile/androidenv/default.nix | 32 ++++++++++++++++++-
 1 file changed, 31 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/mobile/androidenv/default.nix b/pkgs/development/mobile/androidenv/default.nix
index 0291986b5a4a..25ccb6ee6ed0 100644
--- a/pkgs/development/mobile/androidenv/default.nix
+++ b/pkgs/development/mobile/androidenv/default.nix
@@ -222,7 +222,37 @@ rec {
     useInstantApps = true;
   };
 
-  androidsdk_latest = androidsdk_8_0;
+  androidsdk_8_1 = androidsdk {
+    platformVersions = [ "27" ];
+    abiVersions = [ "x86" "x86_64"];
+    useGoogleAPIs = true;
+  };
+
+  androidsdk_8_1_extras = androidsdk {
+    platformVersions = [ "27" ];
+    abiVersions = [ "x86" "x86_64"];
+    useGoogleAPIs = true;
+    useExtraSupportLibs = true;
+    useGooglePlayServices = true;
+    useInstantApps = true;
+  };
+
+  androidsdk_9_0 = androidsdk {
+    platformVersions = [ "28" ];
+    abiVersions = [ "x86" "x86_64"];
+    useGoogleAPIs = true;
+  };
+
+  androidsdk_9_0_extras = androidsdk {
+    platformVersions = [ "28" ];
+    abiVersions = [ "x86" "x86_64"];
+    useGoogleAPIs = true;
+    useExtraSupportLibs = true;
+    useGooglePlayServices = true;
+    useInstantApps = true;
+  };
+
+  androidsdk_latest = androidsdk_9_0;
 
   androidndk_10e = pkgs.callPackage ./androidndk.nix {
     inherit (buildPackages)

From 9c2b2dbd9d08d03d58432f0590d90e3fb916d76f Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 26 Oct 2018 21:53:10 -0700
Subject: [PATCH 0051/1129] ocamlPackages.rresult: 0.5.0 -> 0.6.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ocaml4.06.1-rresult/versions
---
 pkgs/development/ocaml-modules/rresult/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/ocaml-modules/rresult/default.nix b/pkgs/development/ocaml-modules/rresult/default.nix
index d1a796a58e51..2cb602973f5f 100644
--- a/pkgs/development/ocaml-modules/rresult/default.nix
+++ b/pkgs/development/ocaml-modules/rresult/default.nix
@@ -2,10 +2,10 @@
 
 stdenv.mkDerivation rec {
 	name = "ocaml${ocaml.version}-rresult-${version}";
-	version = "0.5.0";
+	version = "0.6.0";
 	src = fetchurl {
 		url = "http://erratique.ch/software/rresult/releases/rresult-${version}.tbz";
-		sha256 = "1xxycxhdhaq8p9vhwi93s2mlxjwgm44fcxybx5vghzgbankz9yhm";
+		sha256 = "1k69a3gvrk7f2cshwjzvk7818f0bwxhacgd14wxy6d4gmrggci86";
 	};
 
 	unpackCmd = "tar xjf $src";

From d861da151f0799f6e12b96126cf8f7d1684ce4fc Mon Sep 17 00:00:00 2001
From: Nick Novitski <nick@expo.io>
Date: Fri, 26 Oct 2018 20:26:51 -0700
Subject: [PATCH 0052/1129] androidenv: version buildTools and add
 buildToolsVersions sdk argument

---
 .../mobile/androidenv/androidsdk.nix          |  12 +-
 .../androidenv/build-tools-srcs-linux.nix     | 376 ++++++++++++++++++
 .../androidenv/build-tools-srcs-macosx.nix    | 376 ++++++++++++++++++
 .../mobile/androidenv/build-tools.nix         |  92 ++---
 .../development/mobile/androidenv/default.nix |  13 +-
 pkgs/development/mobile/androidenv/fetch.sh   |   1 +
 .../mobile/androidenv/generate-tools.sh       |   4 +
 .../mobile/androidenv/generate-tools.xsl      |  43 ++
 pkgs/development/tools/apktool/default.nix    |   2 +-
 9 files changed, 865 insertions(+), 54 deletions(-)
 create mode 100644 pkgs/development/mobile/androidenv/build-tools-srcs-linux.nix
 create mode 100644 pkgs/development/mobile/androidenv/build-tools-srcs-macosx.nix
 create mode 100755 pkgs/development/mobile/androidenv/generate-tools.sh
 create mode 100644 pkgs/development/mobile/androidenv/generate-tools.xsl

diff --git a/pkgs/development/mobile/androidenv/androidsdk.nix b/pkgs/development/mobile/androidenv/androidsdk.nix
index feef5a787bf2..a463adaf731f 100644
--- a/pkgs/development/mobile/androidenv/androidsdk.nix
+++ b/pkgs/development/mobile/androidenv/androidsdk.nix
@@ -6,7 +6,7 @@
 , includeSources
 , licenseAccepted
 }:
-{ platformVersions, abiVersions, useGoogleAPIs, useExtraSupportLibs ? false
+{ platformVersions, abiVersions, useGoogleAPIs, buildToolsVersions ? [], useExtraSupportLibs ? false
 , useGooglePlayServices ? false, useInstantApps ? false }:
 
 if !licenseAccepted then throw ''
@@ -120,9 +120,17 @@ stdenv.mkDerivation rec {
 
     cd ..
     ln -s ${platformTools}/platform-tools
-    ln -s ${buildTools}/build-tools
     ln -s ${support}/support
 
+    mkdir -p build-tools
+    cd build-tools
+
+    ${stdenv.lib.concatMapStrings
+       (v: "ln -s ${builtins.getAttr "v${builtins.replaceStrings ["."] ["_"] v}" buildTools}/build-tools/*")
+       (if (builtins.length buildToolsVersions) == 0 then platformVersions else buildToolsVersions)}
+
+    cd ..
+
     # Symlink required Google API add-ons
 
     mkdir -p add-ons
diff --git a/pkgs/development/mobile/androidenv/build-tools-srcs-linux.nix b/pkgs/development/mobile/androidenv/build-tools-srcs-linux.nix
new file mode 100644
index 000000000000..3c2960755e7b
--- /dev/null
+++ b/pkgs/development/mobile/androidenv/build-tools-srcs-linux.nix
@@ -0,0 +1,376 @@
+
+# This file is generated from generate-tools.sh. DO NOT EDIT.
+# Execute generate-tools.sh or fetch.sh to update the file.
+{ fetchurl }:
+
+{
+    
+  v17 = {
+    version = "17.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r17-linux.zip;
+      sha1 = "2c2872bc3806aabf16a12e3959c2183ddc866e6d";
+    };
+  };
+
+  v18_0_1 = {
+    version = "18.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r18.0.1-linux.zip;
+      sha1 = "f11618492b0d2270c332325d45d752d3656a9640";
+    };
+  };
+
+  v18_1_0 = {
+    version = "18.1.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r18.1-linux.zip;
+      sha1 = "f314a0599e51397f0886fe888b50dd98f2f050d8";
+    };
+  };
+
+  v18_1_1 = {
+    version = "18.1.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r18.1.1-linux.zip;
+      sha1 = "68c9acbfc0cec2d51b19efaed39831a17055d998";
+    };
+  };
+
+  v19 = {
+    version = "19.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r19-linux.zip;
+      sha1 = "55c1a6cf632e7d346f0002b275ec41fd3137fd83";
+    };
+  };
+
+  v19_0_1 = {
+    version = "19.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r19.0.1-linux.zip;
+      sha1 = "18d2312dc4368858914213087f4e61445aca4517";
+    };
+  };
+
+  v19_0_2 = {
+    version = "19.0.2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r19.0.2-linux.zip;
+      sha1 = "a03a6bdea0091aea32e1b35b90a7294c9f04e3dd";
+    };
+  };
+
+  v19_0_3 = {
+    version = "19.0.3";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r19.0.3-linux.zip;
+      sha1 = "c2d6055478e9d2d4fba476ee85f99181ddd1160c";
+    };
+  };
+
+  v19_1_0 = {
+    version = "19.1.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r19.1-linux.zip;
+      sha1 = "1ff20ac15fa47a75d00346ec12f180d531b3ca89";
+    };
+  };
+
+  v20 = {
+    version = "20.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r20-linux.zip;
+      sha1 = "b688905526a5584d1327a662d871a635ff502758";
+    };
+  };
+
+  v21 = {
+    version = "21.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r21-linux.zip;
+      sha1 = "4933328fdeecbd554a29528f254f4993468e1cf4";
+    };
+  };
+
+  v21_0_1 = {
+    version = "21.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r21.0.1-linux.zip;
+      sha1 = "e573069eea3e5255e7a65bedeb767f4fd0a5f49a";
+    };
+  };
+
+  v21_0_2 = {
+    version = "21.0.2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r21.0.2-linux.zip;
+      sha1 = "e1236ab8897b62b57414adcf04c132567b2612a5";
+    };
+  };
+
+  v21_1_0 = {
+    version = "21.1.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r21.1-linux.zip;
+      sha1 = "b7455e543784d52a8925f960bc880493ed1478cb";
+    };
+  };
+
+  v21_1_1 = {
+    version = "21.1.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r21.1.1-linux.zip;
+      sha1 = "1c712ee3a1ba5a8b0548f9c32f17d4a0ddfd727d";
+    };
+  };
+
+  v21_1_2 = {
+    version = "21.1.2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r21.1.2-linux.zip;
+      sha1 = "5e35259843bf2926113a38368b08458735479658";
+    };
+  };
+
+  v22 = {
+    version = "22.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r22-linux.zip;
+      sha1 = "a8a1619dd090e44fac957bce6842e62abf87965b";
+    };
+  };
+
+  v22_0_1 = {
+    version = "22.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r22.0.1-linux.zip;
+      sha1 = "da8b9c5c3ede39298e6cf0283c000c2ee9029646";
+    };
+  };
+
+  v23 = {
+    version = "23.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r23-linux.zip;
+      sha1 = "c1d6209212b01469f80fa804e0c1d39a06bc9060";
+    };
+  };
+
+  v23_0_1 = {
+    version = "23.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r23.0.1-linux.zip;
+      sha1 = "b6ba7c399d5fa487d95289d8832e4ad943aed556";
+    };
+  };
+
+  v23_0_2 = {
+    version = "23.0.2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r23.0.2-linux.zip;
+      sha1 = "8a9f2b37f6fcf7a9fa784dc21aeaeb41bbb9f2c3";
+    };
+  };
+
+  v23_0_3 = {
+    version = "23.0.3";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r23.0.3-linux.zip;
+      sha1 = "368f2600feac7e9b511b82f53d1f2240ae4a91a3";
+    };
+  };
+
+  v24 = {
+    version = "24.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r24-linux.zip;
+      sha1 = "c6271c4d78a5612ea6c7150688bcd5b7313de8d1";
+    };
+  };
+
+  v24_0_1 = {
+    version = "24.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r24.0.1-linux.zip;
+      sha1 = "84f18c392919a074fcbb9b1d967984e6b2fef8b4";
+    };
+  };
+
+  v24_0_2 = {
+    version = "24.0.2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r24.0.2-linux.zip;
+      sha1 = "f199a7a788c3fefbed102eea34d6007737b803cf";
+    };
+  };
+
+  v24_0_3 = {
+    version = "24.0.3";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r24.0.3-linux.zip;
+      sha1 = "9e8cc49d66e03fa1a8ecc1ac3e58f1324f5da304";
+    };
+  };
+
+  v25 = {
+    version = "25.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r25-linux.zip;
+      sha1 = "f2bbda60403e75cabd0f238598c3b4dfca56ea44";
+    };
+  };
+
+  v25_0_1 = {
+    version = "25.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r25.0.1-linux.zip;
+      sha1 = "ff063d252ab750d339f5947d06ff782836f22bac";
+    };
+  };
+
+  v25_0_2 = {
+    version = "25.0.2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r25.0.2-linux.zip;
+      sha1 = "ff953c0177e317618fda40516f3e9d95fd43c7ae";
+    };
+  };
+
+  v25_0_3 = {
+    version = "25.0.3";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r25.0.3-linux.zip;
+      sha1 = "db95f3a0ae376534d4d69f4cdb6fad20649f3509";
+    };
+  };
+
+  v26 = {
+    version = "26.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r26-linux.zip;
+      sha1 = "1cbe72929876f8a872ab1f1b1040a9f720261f59";
+    };
+  };
+
+  v26_rc1 = {
+    version = "26.0.0-rc1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r26-rc1-linux.zip;
+      sha1 = "8cd6388dc96db2d7a49d06159cf990d3bbc78d04";
+    };
+  };
+
+  v26_rc2 = {
+    version = "26.0.0-rc2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r26-rc2-linux.zip;
+      sha1 = "629bbd8d2e415bf64871fb0b4c0540fd6d0347a0";
+    };
+  };
+
+  v26_0_1 = {
+    version = "26.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r26.0.1-linux.zip;
+      sha1 = "5378c2c78091b414d0eac40a6bd37f2faa31a365";
+    };
+  };
+
+  v26_0_2 = {
+    version = "26.0.2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r26.0.2-linux.zip;
+      sha1 = "5b2b7b66c7bf2151f2af183b5b50a17808850592";
+    };
+  };
+
+  v26_0_3 = {
+    version = "26.0.3";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r26.0.3-linux.zip;
+      sha1 = "8a2e6c1bcd845844523a68aa17e5442f0dce328c";
+    };
+  };
+
+  v27 = {
+    version = "27.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r27-linux.zip;
+      sha1 = "28542332ba97cf4a08c3eddfcf5edd70e3cf1260";
+    };
+  };
+
+  v27_0_1 = {
+    version = "27.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r27.0.1-linux.zip;
+      sha1 = "7f4eedb1077ef948b848040dcd15de9e8a759f4a";
+    };
+  };
+
+  v27_0_2 = {
+    version = "27.0.2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r27.0.2-linux.zip;
+      sha1 = "b687ddf6be84f11607871138aad32cf857d0b837";
+    };
+  };
+
+  v27_0_3 = {
+    version = "27.0.3";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r27.0.3-linux.zip;
+      sha1 = "d85e7a6320eddffe7eeace3437605079dac938ca";
+    };
+  };
+
+  v28 = {
+    version = "28.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r28-linux.zip;
+      sha1 = "d9f8a754d833ccd334f56fcc6089c5925cd82abb";
+    };
+  };
+
+  v28_rc1 = {
+    version = "28.0.0-rc1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r28-rc1-linux.zip;
+      sha1 = "1601977fae25fd478bcfaa0481ca5ea3c609d840";
+    };
+  };
+
+  v28_rc2 = {
+    version = "28.0.0-rc2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r28-rc2-linux.zip;
+      sha1 = "efe9c0dde0646a07544c864276390ca6e96b24dc";
+    };
+  };
+
+  v28_0_1 = {
+    version = "28.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r28.0.1-linux.zip;
+      sha1 = "ee70dfa1fccb58b37cebc9544830511f36a137a0";
+    };
+  };
+
+  v28_0_2 = {
+    version = "28.0.2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r28.0.2-linux.zip;
+      sha1 = "b4492209810a3fd48deaa982f9852fef12433d55";
+    };
+  };
+
+  v28_0_3 = {
+    version = "28.0.3";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r28.0.3-linux.zip;
+      sha1 = "ea6f2f7103cd9da9ff0bdf6e37fbbba548fa4165";
+    };
+  };
+
+}
diff --git a/pkgs/development/mobile/androidenv/build-tools-srcs-macosx.nix b/pkgs/development/mobile/androidenv/build-tools-srcs-macosx.nix
new file mode 100644
index 000000000000..1e15aa7c873c
--- /dev/null
+++ b/pkgs/development/mobile/androidenv/build-tools-srcs-macosx.nix
@@ -0,0 +1,376 @@
+
+# This file is generated from generate-tools.sh. DO NOT EDIT.
+# Execute generate-tools.sh or fetch.sh to update the file.
+{ fetchurl }:
+
+{
+    
+  v17 = {
+    version = "17.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r17-macosx.zip;
+      sha1 = "602ee709be9dbb8f179b1e4075148a57f9419930";
+    };
+  };
+
+  v18_0_1 = {
+    version = "18.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r18.0.1-macosx.zip;
+      sha1 = "d84f5692fb44d60fc53e5b2507cebf9f24626902";
+    };
+  };
+
+  v18_1_0 = {
+    version = "18.1.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r18.1-macosx.zip;
+      sha1 = "16ddb299b8b43063e5bb3387ec17147c5053dfd8";
+    };
+  };
+
+  v18_1_1 = {
+    version = "18.1.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r18.1.1-macosx.zip;
+      sha1 = "a9d9d37f6ddf859e57abc78802a77aaa166e48d4";
+    };
+  };
+
+  v19 = {
+    version = "19.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r19-macosx.zip;
+      sha1 = "86ec1c12db1bc446b7bcaefc5cc14eb361044e90";
+    };
+  };
+
+  v19_0_1 = {
+    version = "19.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r19.0.1-macosx.zip;
+      sha1 = "efaf50fb19a3edb8d03efbff76f89a249ad2920b";
+    };
+  };
+
+  v19_0_2 = {
+    version = "19.0.2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r19.0.2-macosx.zip;
+      sha1 = "145bc43065d45f756d99d87329d899052b9a9288";
+    };
+  };
+
+  v19_0_3 = {
+    version = "19.0.3";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r19.0.3-macosx.zip;
+      sha1 = "651cf8754373b2d52e7f6aab2c52eabffe4e9ea4";
+    };
+  };
+
+  v19_1_0 = {
+    version = "19.1.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r19.1-macosx.zip;
+      sha1 = "0d11aae3417de1efb4b9a0e0a7855904a61bcec1";
+    };
+  };
+
+  v20 = {
+    version = "20.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r20-macosx.zip;
+      sha1 = "1240f629411c108a714c4ddd756937c7fab93f83";
+    };
+  };
+
+  v21 = {
+    version = "21.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r21-macosx.zip;
+      sha1 = "9bef7989b51436bd4e5114d8a0330359f077cbfa";
+    };
+  };
+
+  v21_0_1 = {
+    version = "21.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r21.0.1-macosx.zip;
+      sha1 = "b60c8f9b810c980abafa04896706f3911be1ade7";
+    };
+  };
+
+  v21_0_2 = {
+    version = "21.0.2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r21.0.2-macosx.zip;
+      sha1 = "f17471c154058f3734729ef3cc363399b1cd3de1";
+    };
+  };
+
+  v21_1_0 = {
+    version = "21.1.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r21.1-macosx.zip;
+      sha1 = "df619356c2359aa5eacdd48699d15b335d9bd246";
+    };
+  };
+
+  v21_1_1 = {
+    version = "21.1.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r21.1.1-macosx.zip;
+      sha1 = "836a146eab0504aa9387a5132e986fe7c7381571";
+    };
+  };
+
+  v21_1_2 = {
+    version = "21.1.2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r21.1.2-macosx.zip;
+      sha1 = "e7c906b4ba0eea93b32ba36c610dbd6b204bff48";
+    };
+  };
+
+  v22 = {
+    version = "22.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r22-macosx.zip;
+      sha1 = "af95429b24088d704bc5db9bd606e34ac1b82c0d";
+    };
+  };
+
+  v22_0_1 = {
+    version = "22.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r22.0.1-macosx.zip;
+      sha1 = "53dad7f608e01d53b17176ba11165acbfccc5bbf";
+    };
+  };
+
+  v23 = {
+    version = "23.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r23-macosx.zip;
+      sha1 = "90ba6e716f7703a236cd44b2e71c5ff430855a03";
+    };
+  };
+
+  v23_0_1 = {
+    version = "23.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r23.0.1-macosx.zip;
+      sha1 = "d96ec1522721e9a179ae2c591c99f75d31d39718";
+    };
+  };
+
+  v23_0_2 = {
+    version = "23.0.2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r23.0.2-macosx.zip;
+      sha1 = "482c4cbceef8ff58aefd92d8155a38610158fdaf";
+    };
+  };
+
+  v23_0_3 = {
+    version = "23.0.3";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r23.0.3-macosx.zip;
+      sha1 = "fbc98cd303fd15a31d472de6c03bd707829f00b0";
+    };
+  };
+
+  v24 = {
+    version = "24.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r24-macosx.zip;
+      sha1 = "97fc4ed442f23989cc488d02c1d1de9bdde241de";
+    };
+  };
+
+  v24_0_1 = {
+    version = "24.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r24.0.1-macosx.zip;
+      sha1 = "5c6457fcdfa07724fb086d8ff4e8316fc0742848";
+    };
+  };
+
+  v24_0_2 = {
+    version = "24.0.2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r24.0.2-macosx.zip;
+      sha1 = "8bb8fc575477491d5957de743089df412de55cda";
+    };
+  };
+
+  v24_0_3 = {
+    version = "24.0.3";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r24.0.3-macosx.zip;
+      sha1 = "a01c15f1b105c34595681075e1895d58b3fff48c";
+    };
+  };
+
+  v25 = {
+    version = "25.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r25-macosx.zip;
+      sha1 = "273c5c29a65cbed00e44f3aa470bbd7dce556606";
+    };
+  };
+
+  v25_0_1 = {
+    version = "25.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r25.0.1-macosx.zip;
+      sha1 = "7bf7f22d7d48ef20b6ab0e3d7a2912e5c088340f";
+    };
+  };
+
+  v25_0_2 = {
+    version = "25.0.2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r25.0.2-macosx.zip;
+      sha1 = "12a5204bb3b6e39437535469fde7ddf42da46b16";
+    };
+  };
+
+  v25_0_3 = {
+    version = "25.0.3";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r25.0.3-macosx.zip;
+      sha1 = "160d2fefb5ce68e443427fc30a793a703b63e26e";
+    };
+  };
+
+  v26 = {
+    version = "26.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r26-macosx.zip;
+      sha1 = "d01a1aeca03747245f1f5936b3cb01759c66d086";
+    };
+  };
+
+  v26_rc1 = {
+    version = "26.0.0-rc1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r26-rc1-macosx.zip;
+      sha1 = "5c5a1de7d5f4f000d36ae349229fe0be846d6137";
+    };
+  };
+
+  v26_rc2 = {
+    version = "26.0.0-rc2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r26-rc2-macosx.zip;
+      sha1 = "cb1eb738a1f7003025af267a9b8cc2d259533c70";
+    };
+  };
+
+  v26_0_1 = {
+    version = "26.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r26.0.1-macosx.zip;
+      sha1 = "cbde59de198916b390777dd0227921bfa2120832";
+    };
+  };
+
+  v26_0_2 = {
+    version = "26.0.2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r26.0.2-macosx.zip;
+      sha1 = "d9ed7c7f149ce38be5dc08979aea8acec1459ca0";
+    };
+  };
+
+  v26_0_3 = {
+    version = "26.0.3";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r26.0.3-macosx.zip;
+      sha1 = "5bb90ed935d99e5bc90686f43b852e68c5ad40df";
+    };
+  };
+
+  v27 = {
+    version = "27.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r27-macosx.zip;
+      sha1 = "fb4e8d7e6b8d29a77090e34024077a80458d5ae1";
+    };
+  };
+
+  v27_0_1 = {
+    version = "27.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r27.0.1-macosx.zip;
+      sha1 = "1edd07bfdbadd95652d093040e16d858f7489594";
+    };
+  };
+
+  v27_0_2 = {
+    version = "27.0.2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r27.0.2-macosx.zip;
+      sha1 = "6d5d9cf2a47877f273f4b742b19e712a051a31be";
+    };
+  };
+
+  v27_0_3 = {
+    version = "27.0.3";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r27.0.3-macosx.zip;
+      sha1 = "61d9fb18790c68d66ff73bf1e7ad56bc1f1eef2d";
+    };
+  };
+
+  v28 = {
+    version = "28.0.0";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r28-macosx.zip;
+      sha1 = "72088d32d1d82cc3c2cf7cf6618b6130c0c84ade";
+    };
+  };
+
+  v28_rc1 = {
+    version = "28.0.0-rc1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r28-rc1-macosx.zip;
+      sha1 = "2c77821967a2330b7b227072d0b1c02ef19fe2fc";
+    };
+  };
+
+  v28_rc2 = {
+    version = "28.0.0-rc2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r28-rc2-macosx.zip;
+      sha1 = "0d0314b353589feb10e528b44c5a685b6658d797";
+    };
+  };
+
+  v28_0_1 = {
+    version = "28.0.1";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r28.0.1-macosx.zip;
+      sha1 = "aeef42ad953f1630dd6f5d71eefdc0b825211462";
+    };
+  };
+
+  v28_0_2 = {
+    version = "28.0.2";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r28.0.2-macosx.zip;
+      sha1 = "c10dd5a7825578622fb362a8a34f76eb3ba0c0a9";
+    };
+  };
+
+  v28_0_3 = {
+    version = "28.0.3";
+    src = fetchurl {
+      url = https://dl.google.com/android/repository/build-tools_r28.0.3-macosx.zip;
+      sha1 = "f8c333a2991b1ab05a671bc6248b78e00edcd83a";
+    };
+  };
+
+}
diff --git a/pkgs/development/mobile/androidenv/build-tools.nix b/pkgs/development/mobile/androidenv/build-tools.nix
index f0b9a77d3f19..b362dc2dca5c 100644
--- a/pkgs/development/mobile/androidenv/build-tools.nix
+++ b/pkgs/development/mobile/androidenv/build-tools.nix
@@ -1,61 +1,53 @@
-{stdenv, stdenv_32bit, fetchurl, unzip, zlib_32bit, ncurses_32bit, file, zlib, ncurses, coreutils}:
+{stdenv, lib, stdenv_32bit, fetchurl, unzip, zlib_32bit, ncurses_32bit, file, zlib, ncurses, coreutils, buildToolsSources}:
 
-stdenv.mkDerivation rec {
-  version = "28.0.3";
-  name = "android-build-tools-r${version}";
-  src = if (stdenv.hostPlatform.system == "i686-linux" || stdenv.hostPlatform.system == "x86_64-linux")
-    then fetchurl {
-      url = "https://dl.google.com/android/repository/build-tools_r${version}-linux.zip";
-      sha256 = "16klhw9yk8znvbgvg967km4y5sb87z1cnf6njgv8hg3381m9am3r";
-    }
-    else if stdenv.hostPlatform.system == "x86_64-darwin" then fetchurl {
-      url = "https://dl.google.com/android/repository/build-tools_r${version}-macosx.zip";
-      sha256 = "1src9g7058bl2z9y6v404gwqwpixb8b71awxhrb0w5iwnfabhymq";
-    }
-    else throw "System ${stdenv.hostPlatform.system} not supported!";
+let buildBuildTools = name: { version, src }:
+  stdenv.mkDerivation rec {
+    inherit version src;
+    name = "android-build-tools-r${version}";
+    buildCommand = ''
+      mkdir -p $out/build-tools
+      cd $out/build-tools
+      unzip $src
+      mv android-* ${version}
 
-  buildCommand = ''
-    mkdir -p $out/build-tools
-    cd $out/build-tools
-    unzip $src
-    mv android-* ${version}
+      cd ${version}
 
-    cd ${version}
+      for f in $(grep -Rl /bin/ls .); do
+        sed -i -e "s|/bin/ls|${coreutils}/bin/ls|" "$f"
+      done
 
-    for f in $(grep -Rl /bin/ls .); do
-      sed -i -e "s|/bin/ls|${coreutils}/bin/ls|" "$f"
-    done
+      ${stdenv.lib.optionalString (stdenv.hostPlatform.system == "i686-linux" || stdenv.hostPlatform.system == "x86_64-linux")
+        ''
 
-    ${stdenv.lib.optionalString (stdenv.hostPlatform.system == "i686-linux" || stdenv.hostPlatform.system == "x86_64-linux")
-      ''
+          ln -s ${ncurses.out}/lib/libncurses.so.5 `pwd`/lib64/libtinfo.so.5
 
-        ln -s ${ncurses.out}/lib/libncurses.so.5 `pwd`/lib64/libtinfo.so.5
-
-        find . -type f -print0 | while IFS= read -r -d "" file
-        do
-          type=$(file "$file")
-          ## Patch 64-bit binaries
-          if grep -q "ELF 64-bit" <<< "$type"
-          then
-            if grep -q "interpreter" <<< "$type"
+          find . -type f -print0 | while IFS= read -r -d "" file
+          do
+            type=$(file "$file")
+            ## Patch 64-bit binaries
+            if grep -q "ELF 64-bit" <<< "$type"
             then
-              patchelf --set-interpreter ${stdenv.cc.libc.out}/lib/ld-linux-x86-64.so.2 "$file"
-            fi
-            patchelf --set-rpath `pwd`/lib64:${stdenv.cc.cc.lib.out}/lib:${zlib.out}/lib:${ncurses.out}/lib "$file"
-          ## Patch 32-bit binaries
-          elif grep -q "ELF 32-bit" <<< "$type"
-          then
-            if grep -q "interpreter" <<< "$type"
+              if grep -q "interpreter" <<< "$type"
+              then
+                patchelf --set-interpreter ${stdenv.cc.libc.out}/lib/ld-linux-x86-64.so.2 "$file"
+              fi
+              patchelf --set-rpath `pwd`/lib64:${stdenv.cc.cc.lib.out}/lib:${zlib.out}/lib:${ncurses.out}/lib "$file"
+            ## Patch 32-bit binaries
+            elif grep -q "ELF 32-bit" <<< "$type"
             then
-              patchelf --set-interpreter ${stdenv_32bit.cc.libc.out}/lib/ld-linux.so.2 "$file"
+              if grep -q "interpreter" <<< "$type"
+              then
+                patchelf --set-interpreter ${stdenv_32bit.cc.libc.out}/lib/ld-linux.so.2 "$file"
+              fi
+              patchelf --set-rpath ${stdenv_32bit.cc.cc.lib.out}/lib:${zlib_32bit.out}/lib:${ncurses_32bit.out}/lib "$file"
             fi
-            patchelf --set-rpath ${stdenv_32bit.cc.cc.lib.out}/lib:${zlib_32bit.out}/lib:${ncurses_32bit.out}/lib "$file"
-          fi
-        done
-      ''}
+          done
+        ''}
 
-      patchShebangs .
-  '';
+        patchShebangs .
+    '';
 
-  buildInputs = [ unzip file ];
-}
+    buildInputs = [ unzip file ];
+  };
+in
+  lib.mapAttrs buildBuildTools buildToolsSources
diff --git a/pkgs/development/mobile/androidenv/default.nix b/pkgs/development/mobile/androidenv/default.nix
index 25ccb6ee6ed0..9058da1c50a0 100644
--- a/pkgs/development/mobile/androidenv/default.nix
+++ b/pkgs/development/mobile/androidenv/default.nix
@@ -9,8 +9,19 @@ rec {
     inherit buildPackages pkgs;
   };
 
+  buildToolsSources = let
+    system = pkgs.stdenv.hostPlatform.system;
+    path = if (system == "i686-linux" || system == "x86_64-linux")
+      then ./build-tools-srcs-linux.nix
+      else if system == "x86_64-darwin"
+      then ./build-tools-srcs-macosx.nix
+      else throw "System: ${system} not supported!";
+  in
+    import path { inherit (pkgs) fetchurl; };
+
   buildTools = import ./build-tools.nix {
-    inherit (pkgs) stdenv fetchurl unzip zlib file coreutils;
+    inherit (pkgs) stdenv lib fetchurl unzip zlib file coreutils;
+    inherit buildToolsSources;
     stdenv_32bit = pkgs_i686.stdenv;
     zlib_32bit = pkgs_i686.zlib;
     ncurses_32bit = pkgs_i686.ncurses5;
diff --git a/pkgs/development/mobile/androidenv/fetch.sh b/pkgs/development/mobile/androidenv/fetch.sh
index 102f6aafb89e..ef15e8eaeda7 100755
--- a/pkgs/development/mobile/androidenv/fetch.sh
+++ b/pkgs/development/mobile/androidenv/fetch.sh
@@ -11,3 +11,4 @@ curl -o sys-img.xml       https://dl.google.com/android/repository/sys-img/andro
 ./generate-platforms.sh
 ./generate-sysimages.sh
 ./generate-sources.sh
+./generate-tools.sh
diff --git a/pkgs/development/mobile/androidenv/generate-tools.sh b/pkgs/development/mobile/androidenv/generate-tools.sh
new file mode 100755
index 000000000000..5799894fd457
--- /dev/null
+++ b/pkgs/development/mobile/androidenv/generate-tools.sh
@@ -0,0 +1,4 @@
+#!/bin/sh -e
+
+xsltproc --stringparam os linux generate-tools.xsl repository-11.xml > build-tools-srcs-linux.nix
+xsltproc --stringparam os macosx generate-tools.xsl repository-11.xml > build-tools-srcs-macosx.nix
diff --git a/pkgs/development/mobile/androidenv/generate-tools.xsl b/pkgs/development/mobile/androidenv/generate-tools.xsl
new file mode 100644
index 000000000000..814bad129889
--- /dev/null
+++ b/pkgs/development/mobile/androidenv/generate-tools.xsl
@@ -0,0 +1,43 @@
+<?xml version="1.0"?>
+
+<xsl:stylesheet version="1.0" xmlns:xsl="http://www.w3.org/1999/XSL/Transform"
+  xmlns:sdk="http://schemas.android.com/sdk/android/repository/11">
+
+  <xsl:param name="os" />
+  <xsl:output omit-xml-declaration="yes" indent="no" />
+
+  <xsl:template name="repository-url">
+    <xsl:variable name="raw-url" select="sdk:archives/sdk:archive[sdk:host-os=$os or count(sdk:host-os) = 0]/sdk:url"/>
+    <xsl:choose>
+      <xsl:when test="starts-with($raw-url, 'http')">
+        <xsl:value-of select="$raw-url"/>
+      </xsl:when>
+      <xsl:otherwise>
+        <xsl:text>https://dl.google.com/android/repository/</xsl:text>
+        <xsl:value-of select="$raw-url"/>
+      </xsl:otherwise>
+    </xsl:choose>
+  </xsl:template>
+
+  <xsl:template match="/sdk:sdk-repository">
+# This file is generated from generate-tools.sh. DO NOT EDIT.
+# Execute generate-tools.sh or fetch.sh to update the file.
+{ fetchurl }:
+
+{
+    <xsl:for-each select="sdk:build-tool">
+      <xsl:sort select="sdk:revision/sdk:major" data-type="number"/>
+      <xsl:sort select="sdk:revision/sdk:minor" data-type="number"/>
+      <xsl:sort select="sdk:revision/sdk:micro" data-type="number"/>
+      <xsl:sort select="sdk:revision/sdk:preview" data-type="number"/>
+  v<xsl:value-of select="sdk:revision/sdk:major"/><xsl:if test="sdk:revision/sdk:minor + sdk:revision/sdk:micro > 0">_<xsl:value-of select="sdk:revision/sdk:minor" />_<xsl:value-of select="sdk:revision/sdk:micro"/></xsl:if><xsl:if test="sdk:revision/sdk:preview > 0">_rc<xsl:value-of select="sdk:revision/sdk:preview"/></xsl:if> = {
+    version = "<xsl:value-of select="sdk:revision/sdk:major"/>.<xsl:value-of select="sdk:revision/sdk:minor" />.<xsl:value-of select="sdk:revision/sdk:micro"/><xsl:if test="sdk:revision/sdk:preview > 0">-rc<xsl:value-of select="sdk:revision/sdk:preview"/></xsl:if>";
+    src = fetchurl {
+      url = <xsl:call-template name="repository-url"/>;
+      sha1 = "<xsl:value-of select="sdk:archives/sdk:archive[sdk:host-os=$os or count(sdk:host-os) = 0]/sdk:checksum[@type='sha1']" />";
+    };
+  };
+</xsl:for-each>
+}
+</xsl:template>
+</xsl:stylesheet>
diff --git a/pkgs/development/tools/apktool/default.nix b/pkgs/development/tools/apktool/default.nix
index 42deae45a25d..17b0265fddde 100644
--- a/pkgs/development/tools/apktool/default.nix
+++ b/pkgs/development/tools/apktool/default.nix
@@ -23,7 +23,7 @@ stdenv.mkDerivation rec {
     mkdir -p "$out/bin"
     makeWrapper "${jre}/bin/java" "$out/bin/apktool" \
         --add-flags "-jar $out/libexec/apktool/apktool.jar" \
-        --prefix PATH : "${buildTools}/build-tools/25.0.1/"
+        --prefix PATH : "${buildTools.v25_0_1}/build-tools/25.0.1/"
   '';
 
   meta = with stdenv.lib; {

From 5573795901f2d0fb29c6f1f9e7dc765f2d4158ae Mon Sep 17 00:00:00 2001
From: Samuel Leathers <samuel.leathers@iohk.io>
Date: Fri, 6 Apr 2018 11:24:30 -0400
Subject: [PATCH 0053/1129] grafana-reporter: init at 2.0.1

---
 .../monitoring/grafana-reporter/default.nix   | 32 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 34 insertions(+)
 create mode 100644 pkgs/servers/monitoring/grafana-reporter/default.nix

diff --git a/pkgs/servers/monitoring/grafana-reporter/default.nix b/pkgs/servers/monitoring/grafana-reporter/default.nix
new file mode 100644
index 000000000000..03ed37b8b3f5
--- /dev/null
+++ b/pkgs/servers/monitoring/grafana-reporter/default.nix
@@ -0,0 +1,32 @@
+{ stdenv, buildGoPackage, fetchFromGitHub, tetex, makeWrapper }:
+
+with stdenv.lib;
+
+buildGoPackage rec {
+  name = "reporter-${version}";
+  version = "2.0.1";
+  rev = "v${version}";
+
+  goPackagePath = "github.com/IzakMarais/reporter";
+
+  nativeBuildInputs = [ makeWrapper ];
+
+  src = fetchFromGitHub {
+    inherit rev;
+    owner = "IzakMarais";
+    repo = "reporter";
+    sha256 = "0yi7nx8ig5xgkwizddl0gdicnmcdp4qgg1fdxyq04l2y3qs176sg";
+  };
+
+  postInstall = ''
+    wrapProgram $bin/bin/grafana-reporter \
+      --prefix PATH : ${makeBinPath [ tetex ]}
+  '';
+
+  meta = {
+    description = "PDF report generator from a Grafana dashboard";
+    homepage = https://github.com/IzakMarais/reporter;
+    license = licenses.mit;
+    maintainers = with maintainers; [ disassembler ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 9a43ccf0f929..a866e967a985 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -13240,6 +13240,8 @@ with pkgs;
 
   grafana = callPackage ../servers/monitoring/grafana { };
 
+  grafana_reporter = callPackage ../servers/monitoring/grafana-reporter { };
+
   h2o = callPackage ../servers/http/h2o { };
 
   haka = callPackage ../tools/security/haka { };

From 5b30cd77db41a5ef96cca35ff2f4fa10a1577d20 Mon Sep 17 00:00:00 2001
From: Samuel Leathers <samuel.leathers@iohk.io>
Date: Fri, 6 Apr 2018 12:02:10 -0400
Subject: [PATCH 0054/1129] nixos/grafana_reporter: initial service

---
 nixos/modules/module-list.nix                 |  1 +
 .../services/monitoring/grafana-reporter.nix  | 66 +++++++++++++++++++
 2 files changed, 67 insertions(+)
 create mode 100644 nixos/modules/services/monitoring/grafana-reporter.nix

diff --git a/nixos/modules/module-list.nix b/nixos/modules/module-list.nix
index fb6b4262568e..5090533e1c7c 100644
--- a/nixos/modules/module-list.nix
+++ b/nixos/modules/module-list.nix
@@ -427,6 +427,7 @@
   ./services/monitoring/dd-agent/dd-agent.nix
   ./services/monitoring/fusion-inventory.nix
   ./services/monitoring/grafana.nix
+  ./services/monitoring/grafana-reporter.nix
   ./services/monitoring/graphite.nix
   ./services/monitoring/hdaps.nix
   ./services/monitoring/heapster.nix
diff --git a/nixos/modules/services/monitoring/grafana-reporter.nix b/nixos/modules/services/monitoring/grafana-reporter.nix
new file mode 100644
index 000000000000..149026d20188
--- /dev/null
+++ b/nixos/modules/services/monitoring/grafana-reporter.nix
@@ -0,0 +1,66 @@
+{ options, config, lib, pkgs, ... }:
+
+with lib;
+
+let
+  cfg = config.services.grafana_reporter;
+
+in {
+  options.services.grafana_reporter = {
+    enable = mkEnableOption "grafana_reporter";
+
+    grafana = {
+      protocol = mkOption {
+        description = "Grafana protocol.";
+        default = "http";
+        type = types.enum ["http" "https"];
+      };
+      addr = mkOption {
+        description = "Grafana address.";
+        default = "127.0.0.1";
+        type = types.str;
+      };
+      port = mkOption {
+        description = "Grafana port.";
+        default = 3000;
+        type = types.int;
+      };
+
+    };
+    addr = mkOption {
+      description = "Listening address.";
+      default = "127.0.0.1";
+      type = types.str;
+    };
+
+    port = mkOption {
+      description = "Listening port.";
+      default = 8686;
+      type = types.int;
+    };
+
+    templateDir = mkOption {
+      description = "Optional template directory to use custom tex templates";
+      default = "${pkgs.grafana_reporter}";
+      type = types.str;
+    };
+  };
+
+  config = mkIf cfg.enable {
+    systemd.services.grafana_reporter = {
+      description = "Grafana Reporter Service Daemon";
+      wantedBy = ["multi-user.target"];
+      after = ["network.target"];
+      serviceConfig = let
+        args = lib.concatSepString " " [
+          "-proto ${cfg.grafana.protocol}://"
+          "-ip ${cfg.grafana.addr}:${toString cfg.grafana.port}"
+          "-port :${toString cfg.port}"
+          "-templates ${cfg.templateDir}"
+        ];
+      in {
+        ExecStart = "${pkgs.grafana_reporter.bin}/bin/grafana-reporter ${args}";
+      };
+    };
+  };
+}

From 889a5c35127e4e6b2c722611dcaa9c802337446b Mon Sep 17 00:00:00 2001
From: Robert Hensing <robert@roberthensing.nl>
Date: Sat, 27 Oct 2018 14:00:19 +0200
Subject: [PATCH 0055/1129] pkgs.appendOverlays: Avoid unnecessary nixpkgs
 evaluation

---
 pkgs/top-level/stage.nix | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/pkgs/top-level/stage.nix b/pkgs/top-level/stage.nix
index 37724a870a30..d270a6608a19 100644
--- a/pkgs/top-level/stage.nix
+++ b/pkgs/top-level/stage.nix
@@ -164,7 +164,9 @@ let
     # preexisting overlays. Prefer to initialize with the right overlays
     # in one go when calling Nixpkgs, for performance and simplicity.
     appendOverlays = extraOverlays:
-      import ./stage.nix (args // { overlays = args.overlays ++ extraOverlays; });
+      if extraOverlays == []
+      then self
+      else import ./stage.nix (args // { overlays = args.overlays ++ extraOverlays; });
 
     # Extend the package set with a single overlay. This preserves
     # preexisting overlays. Prefer to initialize with the right overlays

From 9bf79add1380b436d8cf7bb885095cd1a7bcfca0 Mon Sep 17 00:00:00 2001
From: royneary <christian@ulrich.earth>
Date: Sat, 27 Oct 2018 14:30:21 +0200
Subject: [PATCH 0056/1129]  nim: 0.18.0 -> 0.19.0

- remove sqlite as dependency (I don't see why it's needed)
- run checkPhase after installPhase (at least one test assumes the
standard library in ../lib relative to the nim binary)
- the broken tests pass now or don't exist anymore
- two of the tests requiring network access pass now without network access
- the tests in manyloc do not download dependencies and are passing now
---
 pkgs/development/compilers/nim/default.nix | 32 ++++++++--------------
 1 file changed, 12 insertions(+), 20 deletions(-)

diff --git a/pkgs/development/compilers/nim/default.nix b/pkgs/development/compilers/nim/default.nix
index a4b706d35aa5..0d06f847ddfd 100644
--- a/pkgs/development/compilers/nim/default.nix
+++ b/pkgs/development/compilers/nim/default.nix
@@ -1,14 +1,14 @@
 # based on https://github.com/nim-lang/Nim/blob/v0.18.0/.travis.yml
 
-{ stdenv, lib, fetchurl, makeWrapper, nodejs-slim-8_x, openssl, pcre, readline, sqlite, boehmgc, sfml, tzdata, coreutils }:
+{ stdenv, lib, fetchurl, makeWrapper, nodejs-slim-8_x, openssl, pcre, readline, boehmgc, sfml, tzdata, coreutils }:
 
 stdenv.mkDerivation rec {
   name = "nim-${version}";
-  version = "0.18.0";
+  version = "0.19.0";
 
   src = fetchurl {
     url = "https://nim-lang.org/download/${name}.tar.xz";
-    sha256 = "45c74adb35f08dfa9add1112ae17330e5d902ebb4a36e7046caee8b79e6f3bd0";
+    sha256 = "0biwvw1gividp5lkf0daq1wp9v6ms4xy6dkf5zj0sn9w4m3n76d1";
   };
 
   doCheck = !stdenv.isDarwin;
@@ -19,7 +19,6 @@ stdenv.mkDerivation rec {
     "-lcrypto"
     "-lpcre"
     "-lreadline"
-    "-lsqlite3"
     "-lgc"
   ];
 
@@ -30,10 +29,16 @@ stdenv.mkDerivation rec {
 
   buildInputs = [
     makeWrapper nodejs-slim-8_x tzdata coreutils
-    openssl pcre readline sqlite boehmgc sfml
+    openssl pcre readline boehmgc sfml
   ];
 
+  phases = [ "unpackPhase" "patchPhase" "buildPhase" "installPhase" "checkPhase" ];
+
   buildPhase = ''
+    # use gcc to trigger the linker since calling ld in build.sh causes an error 
+    LD=gcc
+    # build.sh wants to write to $HOME/.cache
+    HOME=$TMPDIR
     sh build.sh
     ./bin/nim c koch
     ./koch boot  -d:release \
@@ -51,7 +56,7 @@ stdenv.mkDerivation rec {
       --suffix PATH : ${lib.makeBinPath [ stdenv.cc ]}
   '';
 
-  postPatch =
+  patchPhase =
     let disableTest = ''sed -i '1i discard \"\"\"\n  disabled: true\n\"\"\"\n\n' '';
         disableCompile = ''sed -i -e 's/^/#/' '';
     in ''
@@ -59,25 +64,12 @@ stdenv.mkDerivation rec {
       substituteInPlace ./tests/osproc/tworkingdir.nim --replace "/usr/bin" "${coreutils}/bin"
       substituteInPlace ./tests/stdlib/ttimes.nim --replace "/usr/share/zoneinfo" "${tzdata}/share/zoneinfo"
 
-      # disable supposedly broken tests
-      ${disableTest} ./tests/errmsgs/tproper_stacktrace2.nim
-      ${disableTest} ./tests/vm/trgba.nim
-
       # disable tests requiring network access (not available in the build container)
       ${disableTest} ./tests/stdlib/thttpclient.nim
-      ${disableTest} ./tests/cpp/tasync_cpp.nim
-      ${disableTest} ./tests/niminaction/Chapter7/Tweeter/src/tweeter.nim
-
-      # disable tests requiring un-downloadable dependencies (using nimble, which isn't available in the fetch phase)
-      ${disableCompile} ./tests/manyloc/keineschweine/keineschweine.nim
-      ${disableTest} ./tests/manyloc/keineschweine/keineschweine.nim
-      ${disableCompile} ./tests/manyloc/nake/nakefile.nim
-      ${disableTest} ./tests/manyloc/nake/nakefile.nim
-      ${disableCompile} ./tests/manyloc/named_argument_bug/main.nim
-      ${disableTest} ./tests/manyloc/named_argument_bug/main.nim
     '';
 
   checkPhase = ''
+    PATH=$PATH:$out/bin
     ./koch tests
   '';
 

From a54a799d59f2a4fba2e119e0c42dbe96c2c74a68 Mon Sep 17 00:00:00 2001
From: Robert Hensing <robert@roberthensing.nl>
Date: Sat, 27 Oct 2018 14:51:54 +0200
Subject: [PATCH 0057/1129] NixOS: nixpkgs.pkgs: Append overlays when specified

---
 nixos/modules/misc/nixpkgs.nix  | 22 ++++++++++++++--------
 pkgs/top-level/all-packages.nix |  2 +-
 2 files changed, 15 insertions(+), 9 deletions(-)

diff --git a/nixos/modules/misc/nixpkgs.nix b/nixos/modules/misc/nixpkgs.nix
index 7f9833e184ab..3e9f93b95e64 100644
--- a/nixos/modules/misc/nixpkgs.nix
+++ b/nixos/modules/misc/nixpkgs.nix
@@ -1,9 +1,10 @@
-{ config, lib, pkgs, ... }:
+{ config, options, lib, pkgs, ... }:
 
 with lib;
 
 let
   cfg = config.nixpkgs;
+  opt = options.nixpkgs;
 
   isConfig = x:
     builtins.isAttrs x || lib.isFunction x;
@@ -54,6 +55,12 @@ let
     check = builtins.isAttrs;
   };
 
+  defaultPkgs = import ../../.. {
+    inherit (cfg) config overlays localSystem crossSystem;
+  };
+
+  finalPkgs = if opt.pkgs.isDefined then cfg.pkgs.appendOverlays cfg.overlays else defaultPkgs;
+
 in
 
 {
@@ -65,9 +72,6 @@ in
             inherit (cfg) config overlays localSystem crossSystem;
           }
         '';
-      default = import ../../.. {
-        inherit (cfg) config overlays localSystem crossSystem;
-      };
       type = pkgsType;
       example = literalExample ''import <nixpkgs> {}'';
       description = ''
@@ -128,12 +132,14 @@ in
       description = ''
         List of overlays to use with the Nix Packages collection.
         (For details, see the Nixpkgs documentation.)  It allows
-        you to override packages globally. This is a function that
+        you to override packages globally. Each function in the list
         takes as an argument the <emphasis>original</emphasis> Nixpkgs.
         The first argument should be used for finding dependencies, and
         the second should be used for overriding recipes.
 
-        Ignored when <code>nixpkgs.pkgs</code> is set.
+        If <code>nixpkgs.pkgs</code> is set, overlays specified here
+        will be applied after the overlays that were already present
+        in <code>nixpkgs.pkgs</code>.
       '';
     };
 
@@ -207,8 +213,8 @@ in
 
   config = {
     _module.args = {
-      pkgs = cfg.pkgs;
-      pkgs_i686 = cfg.pkgs.pkgsi686Linux;
+      pkgs = finalPkgs;
+      pkgs_i686 = finalPkgs.pkgsi686Linux;
     };
   };
 }
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 782fb6d8dd89..d0038d8c256f 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -22091,7 +22091,7 @@ with pkgs;
    *            The result can be extended in the modules by defining
    *            extra options in system.build.
    *
-   * Unlike in plain NixOS, the nixpkgs.config, nixpkgs.overlays and
+   * Unlike in plain NixOS, the nixpkgs.config and
    * nixpkgs.system options will be ignored by default. Instead,
    * nixpkgs.pkgs will have the default value of pkgs as it was
    * constructed right after invoking the nixpkgs function (e.g. the

From 89d71c5279196f593152b52f92f1a8580a41c87d Mon Sep 17 00:00:00 2001
From: royneary <christian@ulrich.earth>
Date: Sat, 27 Oct 2018 16:58:44 +0200
Subject: [PATCH 0058/1129] nim: don't hardcode gcc

---
 pkgs/development/compilers/nim/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/compilers/nim/default.nix b/pkgs/development/compilers/nim/default.nix
index 0d06f847ddfd..28017006273d 100644
--- a/pkgs/development/compilers/nim/default.nix
+++ b/pkgs/development/compilers/nim/default.nix
@@ -35,8 +35,8 @@ stdenv.mkDerivation rec {
   phases = [ "unpackPhase" "patchPhase" "buildPhase" "installPhase" "checkPhase" ];
 
   buildPhase = ''
-    # use gcc to trigger the linker since calling ld in build.sh causes an error 
-    LD=gcc
+    # use $CC to trigger the linker since calling ld in build.sh causes an error
+    LD=$CC
     # build.sh wants to write to $HOME/.cache
     HOME=$TMPDIR
     sh build.sh

From 82365ebe0442b9f90a233ed24c822861a26d08da Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Sat, 27 Oct 2018 17:32:39 +0100
Subject: [PATCH 0059/1129] watchexec: fix darwin build

---
 pkgs/tools/misc/watchexec/default.nix | 12 ++++++++++--
 pkgs/top-level/all-packages.nix       |  4 +++-
 2 files changed, 13 insertions(+), 3 deletions(-)

diff --git a/pkgs/tools/misc/watchexec/default.nix b/pkgs/tools/misc/watchexec/default.nix
index e376568d3503..dd3eddf73954 100644
--- a/pkgs/tools/misc/watchexec/default.nix
+++ b/pkgs/tools/misc/watchexec/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, rustPlatform, fetchFromGitHub }:
+{ stdenv, rustPlatform, fetchFromGitHub, CoreServices, CoreFoundation }:
 
 rustPlatform.buildRustPackage rec {
   name = "watchexec-${version}";
@@ -13,11 +13,19 @@ rustPlatform.buildRustPackage rec {
 
   cargoSha256 = "1li84kq9myaw0zwx69y72f3lx01s7i9p8yays4rwvl1ymr614y1l";
 
+  buildInputs = stdenv.lib.optionals stdenv.isDarwin [ CoreServices ];
+
+  # FIXME: Use impure version of CoreFoundation because of missing symbols.
+  #   Undefined symbols for architecture x86_64: "_CFURLResourceIsReachable"
+  preConfigure = stdenv.lib.optionalString stdenv.isDarwin ''
+    export NIX_LDFLAGS="-F${CoreFoundation}/Library/Frameworks -framework CoreFoundation $NIX_LDFLAGS"
+  '';
+
   meta = with stdenv.lib; {
     description = "Executes commands in response to file modifications";
     homepage = https://github.com/watchexec/watchexec;
     license = with licenses; [ asl20 ];
     maintainers = [ maintainers.michalrus ];
-    platforms = platforms.linux;
+    platforms = platforms.linux ++ platforms.darwin;
   };
 }
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 12665aa1754c..7483f80bbd74 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -5942,7 +5942,9 @@ with pkgs;
 
   wal_e = callPackage ../tools/backup/wal-e { };
 
-  watchexec = callPackage ../tools/misc/watchexec { };
+  watchexec = callPackage ../tools/misc/watchexec {
+    inherit (darwin.apple_sdk.frameworks) CoreServices CoreFoundation;
+  };
 
   watchman = callPackage ../development/tools/watchman {
     inherit (darwin.apple_sdk.frameworks) CoreServices;

From 651c1784a943488b16dad56af7a382091f2e45e8 Mon Sep 17 00:00:00 2001
From: royneary <christian@ulrich.earth>
Date: Sat, 27 Oct 2018 20:39:02 +0200
Subject: [PATCH 0060/1129] nim: disable test supposedly broken on Aarch64

---
 pkgs/development/compilers/nim/default.nix | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/pkgs/development/compilers/nim/default.nix b/pkgs/development/compilers/nim/default.nix
index 28017006273d..3596c17b4071 100644
--- a/pkgs/development/compilers/nim/default.nix
+++ b/pkgs/development/compilers/nim/default.nix
@@ -58,6 +58,7 @@ stdenv.mkDerivation rec {
 
   patchPhase =
     let disableTest = ''sed -i '1i discard \"\"\"\n  disabled: true\n\"\"\"\n\n' '';
+        disableStdLibTest = ''sed -i -e '/^when isMainModule/,/^END$/{s/^/#/}' '';
         disableCompile = ''sed -i -e 's/^/#/' '';
     in ''
       substituteInPlace ./tests/async/tioselectors.nim --replace "/bin/sleep" "sleep"
@@ -66,6 +67,9 @@ stdenv.mkDerivation rec {
 
       # disable tests requiring network access (not available in the build container)
       ${disableTest} ./tests/stdlib/thttpclient.nim
+    '' + lib.optionalString stdenv.isAarch64 ''
+      # disable test supposedly broken on aarch64
+      ${disableStdLibTest} ./lib/pure/stats.nim
     '';
 
   checkPhase = ''

From 5f894a67f565129ac683434c3040ba85c2df3750 Mon Sep 17 00:00:00 2001
From: Robert Hensing <robert@roberthensing.nl>
Date: Sun, 28 Oct 2018 02:09:43 +0200
Subject: [PATCH 0061/1129] nixos/modules/misc/nixpkgs.nix: Use pure Nixpkgs
 function

---
 nixos/modules/misc/nixpkgs.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/nixos/modules/misc/nixpkgs.nix b/nixos/modules/misc/nixpkgs.nix
index 3e9f93b95e64..ee85f8c7ab96 100644
--- a/nixos/modules/misc/nixpkgs.nix
+++ b/nixos/modules/misc/nixpkgs.nix
@@ -55,7 +55,7 @@ let
     check = builtins.isAttrs;
   };
 
-  defaultPkgs = import ../../.. {
+  defaultPkgs = import ../../../pkgs/top-level/default.nix {
     inherit (cfg) config overlays localSystem crossSystem;
   };
 
@@ -68,7 +68,7 @@ in
 
     pkgs = mkOption {
       defaultText = literalExample
-        ''import "''${nixos}/.." {
+        ''import "''${nixos}/../pkgs/top-level" {
             inherit (cfg) config overlays localSystem crossSystem;
           }
         '';

From 696a8bd2b5750d5a0c67887cce0628f59dc26f9e Mon Sep 17 00:00:00 2001
From: Robert Hensing <robert@roberthensing.nl>
Date: Sun, 28 Oct 2018 02:11:00 +0200
Subject: [PATCH 0062/1129] nixpkgs.overlays: Add note about nixpkgs.pkgs'
 treatment of other options

---
 nixos/modules/misc/nixpkgs.nix | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/nixos/modules/misc/nixpkgs.nix b/nixos/modules/misc/nixpkgs.nix
index ee85f8c7ab96..81556c419bd7 100644
--- a/nixos/modules/misc/nixpkgs.nix
+++ b/nixos/modules/misc/nixpkgs.nix
@@ -140,6 +140,9 @@ in
         If <code>nixpkgs.pkgs</code> is set, overlays specified here
         will be applied after the overlays that were already present
         in <code>nixpkgs.pkgs</code>.
+
+        Note that other options such as <code>nixpkgs.config</code> will
+        be ignored when <code>nixpkgs.pkgs</code> is set.
       '';
     };
 

From 95fab6a09c4fd42eb9f69b9abd554735117dadd0 Mon Sep 17 00:00:00 2001
From: Rodney Lorrimar <dev@rodney.id.au>
Date: Mon, 15 Oct 2018 13:17:12 +1000
Subject: [PATCH 0063/1129] linuxPackages.bpftrace: init at unstable-2018-10-27

---
 .../linux/bpftrace/bcc-source.patch           | 32 ++++++++
 pkgs/os-specific/linux/bpftrace/default.nix   | 57 +++++++++++++++
 .../linux/bpftrace/disable-gtests.patch       | 73 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 4 files changed, 164 insertions(+)
 create mode 100644 pkgs/os-specific/linux/bpftrace/bcc-source.patch
 create mode 100644 pkgs/os-specific/linux/bpftrace/default.nix
 create mode 100644 pkgs/os-specific/linux/bpftrace/disable-gtests.patch

diff --git a/pkgs/os-specific/linux/bpftrace/bcc-source.patch b/pkgs/os-specific/linux/bpftrace/bcc-source.patch
new file mode 100644
index 000000000000..a4c9947f0c34
--- /dev/null
+++ b/pkgs/os-specific/linux/bpftrace/bcc-source.patch
@@ -0,0 +1,32 @@
+From fc0a5bd2ddb5827c5288ee284c1f2d834d79e432 Mon Sep 17 00:00:00 2001
+From: Rodney Lorrimar <dev@rodney.id.au>
+Date: Tue, 16 Oct 2018 09:55:59 +1000
+Subject: [PATCH 1/3] Don't use ExternalProject for bcc sources
+
+---
+ CMakeLists.txt | 9 +++++++++
+ 1 file changed, 9 insertions(+)
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index eae850a..b20fb33 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -31,6 +31,15 @@ if (OFFLINE_BUILDS)
+     UPDATE_DISCONNECTED 1
+     BUILD_COMMAND ${CMAKE_COMMAND} --build . --target bcc-static
+     )
++elseif (NIX_BUILDS)
++  include(ExternalProject)
++  ExternalProject_Add(bcc
++    DOWNLOAD_COMMAND rmdir bcc && ln -sf $ENV{bccSrc} bcc
++    STEP_TARGETS build update
++    EXCLUDE_FROM_ALL 1
++    UPDATE_DISCONNECTED 1
++    BUILD_COMMAND ${CMAKE_COMMAND} --build . --target bcc-static
++    )
+ else()
+   include(ExternalProject)
+   ExternalProject_Add(bcc
+-- 
+2.17.1
+
diff --git a/pkgs/os-specific/linux/bpftrace/default.nix b/pkgs/os-specific/linux/bpftrace/default.nix
new file mode 100644
index 000000000000..12773a957165
--- /dev/null
+++ b/pkgs/os-specific/linux/bpftrace/default.nix
@@ -0,0 +1,57 @@
+{ stdenv, fetchFromGitHub
+, cmake, pkgconfig, flex, bison
+, llvmPackages, kernel, linuxHeaders, elfutils, libelf, bcc
+}:
+
+stdenv.mkDerivation rec {
+  name = "bpftrace-unstable-${version}";
+  version = "2018-10-27";
+
+  src = fetchFromGitHub {
+    owner = "iovisor";
+    repo = "bpftrace";
+    rev = "c07b54f61fd7b7b49e0a254e746d6f442c5d780d";
+    sha256 = "1mpcjfyay9akmpqxag2ndwpz1qsdx8ii07jh9fky4w40wi9cipyg";
+  };
+
+  # bpftrace requires an unreleased version of bcc, added to the cmake
+  # build as an ExternalProject.
+  # https://github.com/iovisor/bpftrace/issues/184
+  bccSrc = fetchFromGitHub {
+    owner = "iovisor";
+    repo = "bcc";
+    rev = "afd00154865f3b2da6781cf92cecebaca4853950";
+    sha256 = "0ad78smrnipr1f377i5rv6ksns7v2vq54g5badbj5ldqs4x0hygd";
+  };
+
+  buildInputs = [
+    llvmPackages.llvm llvmPackages.clang-unwrapped kernel
+    elfutils libelf bccSrc
+  ];
+
+  nativeBuildInputs = [ cmake pkgconfig flex bison ]
+    # libelf is incompatible with elfutils-libelf
+    ++ stdenv.lib.filter (x: x != libelf) kernel.moduleBuildDependencies;
+
+  patches = [
+    ./bcc-source.patch
+    # https://github.com/iovisor/bpftrace/issues/184
+    ./disable-gtests.patch
+  ];
+
+  configurePhase = ''
+    mkdir build
+    cd build
+    cmake ../                                   \
+      -DKERNEL_HEADERS_DIR=${linuxHeaders}      \
+      -DNIX_BUILDS:BOOL=ON                      \
+      -DCMAKE_INSTALL_PREFIX=$out
+  '';
+
+  meta = with stdenv.lib; {
+    description = "High-level tracing language for Linux eBPF";
+    homepage = https://github.com/iovisor/bpftrace;
+    license = licenses.asl20;
+    maintainers = with maintainers; [ rvl ];
+  };
+}
diff --git a/pkgs/os-specific/linux/bpftrace/disable-gtests.patch b/pkgs/os-specific/linux/bpftrace/disable-gtests.patch
new file mode 100644
index 000000000000..941d85a41126
--- /dev/null
+++ b/pkgs/os-specific/linux/bpftrace/disable-gtests.patch
@@ -0,0 +1,73 @@
+From 221eea24674fffb3b657b2bd0c923071b69d48a7 Mon Sep 17 00:00:00 2001
+From: Rodney Lorrimar <dev@rodney.id.au>
+Date: Tue, 16 Oct 2018 09:56:47 +1000
+Subject: [PATCH 2/3] Disable tests
+
+Would prefer to use gtest library in the normal way rather through
+ExternalProject.
+---
+ CMakeLists.txt       |  4 ++--
+ tests/CMakeLists.txt | 18 +++++++++++-------
+ 2 files changed, 13 insertions(+), 9 deletions(-)
+
+diff --git a/CMakeLists.txt b/CMakeLists.txt
+index b20fb33..7025d17 100644
+--- a/CMakeLists.txt
++++ b/CMakeLists.txt
+@@ -20,7 +20,7 @@ add_compile_options("-Wno-format-security")
+ #add_compile_options("-Wstrict-overflow=5")
+ #add_compile_options("-Wdisabled-optimization")
+ 
+-enable_testing()
++# enable_testing()
+ 
+ if (OFFLINE_BUILDS)
+   include(ExternalProject)
+@@ -79,7 +79,7 @@ include_directories(${CLANG_INCLUDE_DIRS})
+ add_subdirectory(src/arch)
+ add_subdirectory(src/ast)
+ add_subdirectory(src)
+-add_subdirectory(tests)
++# add_subdirectory(tests)
+ add_subdirectory(resources)
+ add_subdirectory(tools)
+ add_subdirectory(man)
+diff --git a/tests/CMakeLists.txt b/tests/CMakeLists.txt
+index c283efa..6b5bff0 100644
+--- a/tests/CMakeLists.txt
++++ b/tests/CMakeLists.txt
+@@ -45,6 +45,8 @@ if (OFFLINE_BUILDS)
+     EXCLUDE_FROM_ALL 1
+     UPDATE_DISCONNECTED 1
+     )
++elseif (NIX_BUILDS)
++
+ else()
+   include(ExternalProject)
+   ExternalProject_Add(gtest-git
+@@ -54,13 +56,15 @@ else()
+     EXCLUDE_FROM_ALL 1
+     )
+ endif()
+-add_dependencies(bpftrace_test gtest-git-build)
+-ExternalProject_Get_Property(gtest-git source_dir binary_dir)
+-target_include_directories(bpftrace_test PUBLIC ${source_dir}/googletest/include)
+-target_include_directories(bpftrace_test PUBLIC ${source_dir}/googlemock/include)
+-target_link_libraries(bpftrace_test ${binary_dir}/googlemock/gtest/libgtest.a)
+-target_link_libraries(bpftrace_test ${binary_dir}/googlemock/gtest/libgtest_main.a)
+-target_link_libraries(bpftrace_test ${binary_dir}/googlemock/libgmock.a)
++
++find_library(LIBGTEST "gtest")
++if(LIBGTEST)
++    set(LIBRARY_DEPENDENCIES
++        ${LIBRARY_DEPENDENCIES}
++       ${LIBGTEST}
++    )
++endif()
++
+ target_link_libraries(bpftrace_test ${CMAKE_THREAD_LIBS_INIT})
+ 
+ add_test(NAME bpftrace_test COMMAND bpftrace_test)
+-- 
+2.17.1
+
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index e808b70fb41e..276135f183e8 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -14210,6 +14210,8 @@ with pkgs;
       python = python3;
     };
 
+    bpftrace = callPackage ../os-specific/linux/bpftrace { };
+
     bbswitch = callPackage ../os-specific/linux/bbswitch {};
 
     beegfs-module = callPackage ../os-specific/linux/beegfs/kernel-module.nix { };

From fc476599adc6a990c0484e00ce16b76f31076092 Mon Sep 17 00:00:00 2001
From: Renaud <c0bw3b@users.noreply.github.com>
Date: Sun, 28 Oct 2018 10:48:00 +0100
Subject: [PATCH 0064/1129] installation-device: set GC initial heap size to
 1MB

100000 (100kB) is too aggressive (too low) and gets ignored by the GC
See issue #43339
---
 nixos/modules/profiles/installation-device.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nixos/modules/profiles/installation-device.nix b/nixos/modules/profiles/installation-device.nix
index 370db2b08452..580ea4a58e5b 100644
--- a/nixos/modules/profiles/installation-device.nix
+++ b/nixos/modules/profiles/installation-device.nix
@@ -63,7 +63,7 @@ with lib;
     # Tell the Nix evaluator to garbage collect more aggressively.
     # This is desirable in memory-constrained environments that don't
     # (yet) have swap set up.
-    environment.variables.GC_INITIAL_HEAP_SIZE = "100000";
+    environment.variables.GC_INITIAL_HEAP_SIZE = "1M";
 
     # Make the installer more likely to succeed in low memory
     # environments.  The kernel's overcommit heustistics bite us

From b4c54485bfd8a39d4cfd742c1689dfd8b3a59eb6 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sat, 27 Oct 2018 14:42:03 +0200
Subject: [PATCH 0065/1129] remmina: clean up

Desktop file is included now, so no need to create it manually.
libgnome-keyring is not used anymore, libsecret replaced it.
---
 .../networking/remote/remmina/default.nix     | 36 ++++---------------
 1 file changed, 6 insertions(+), 30 deletions(-)

diff --git a/pkgs/applications/networking/remote/remmina/default.nix b/pkgs/applications/networking/remote/remmina/default.nix
index e823977db204..81ced3e641bc 100644
--- a/pkgs/applications/networking/remote/remmina/default.nix
+++ b/pkgs/applications/networking/remote/remmina/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitLab, cmake, pkgconfig, wrapGAppsHook
+{ stdenv, fetchFromGitLab, cmake, ninja, pkgconfig, wrapGAppsHook
 , glib, gtk3, gettext, libxkbfile, libX11
 , freerdp, libssh, libgcrypt, gnutls, makeDesktopItem
 , pcre, libdbusmenu-gtk3, libappindicator-gtk3
@@ -7,24 +7,11 @@
 , openssl, gsettings-desktop-schemas, json-glib
 # The themes here are soft dependencies; only icons are missing without them.
 , hicolor-icon-theme, adwaita-icon-theme
-, gnomeSupport ? true, libgnome-keyring
 }:
 
 with stdenv.lib;
 
-let
-
-  desktopItem = makeDesktopItem {
-    name = "remmina";
-    desktopName = "Remmina";
-    genericName = "Remmina Remote Desktop Client";
-    exec = "remmina";
-    icon = "remmina";
-    comment = "Connect to remote desktops";
-    categories = "GTK;GNOME;X-GNOME-NetworkSettings;Network;";
-  };
-
-in stdenv.mkDerivation rec {
+stdenv.mkDerivation {
   name = "remmina-${version}";
   version = "1.2.32";
 
@@ -35,22 +22,16 @@ in stdenv.mkDerivation rec {
     sha256 = "15szv1xs6drxq6qyksmxcfdz516ja4zm52r4yf6hwij3fgl8qdpw";
   };
 
-  nativeBuildInputs = [ pkgconfig ];
+  nativeBuildInputs = [ cmake ninja pkgconfig wrapGAppsHook ];
   buildInputs = [
-    cmake wrapGAppsHook gsettings-desktop-schemas
+    gsettings-desktop-schemas
     glib gtk3 gettext libxkbfile libX11
     freerdp libssh libgcrypt gnutls
     pcre libdbusmenu-gtk3 libappindicator-gtk3
     libvncserver libpthreadstubs libXdmcp libxkbcommon
     libsecret libsoup spice-protocol spice-gtk epoxy at-spi2-core
     openssl hicolor-icon-theme adwaita-icon-theme json-glib
-  ]
-  ++ optional gnomeSupport libgnome-keyring;
-
-  preConfigure = optionalString (!gnomeSupport) ''
-    substituteInPlace CMakeLists.txt \
-      --replace "add_subdirectory(remmina-plugins-gnome)" ""
-  '';
+  ];
 
   cmakeFlags = [
     "-DWITH_VTE=OFF"
@@ -68,13 +49,8 @@ in stdenv.mkDerivation rec {
     )
   '';
 
-  postInstall = ''
-    mkdir -pv $out/share/applications
-    cp ${desktopItem}/share/applications/* $out/share/applications
-  '';
-
   meta = {
-    license = stdenv.lib.licenses.gpl2;
+    license = licenses.gpl2;
     homepage = https://gitlab.com/Remmina/Remmina;
     description = "Remote desktop client written in GTK+";
     maintainers = with maintainers; [ melsigl ryantm ];

From 0982b78ddecdb89aedd77d658616d32a4b14dd73 Mon Sep 17 00:00:00 2001
From: Raphael Borun Das Gupta <git@raphael.dasgupta.ch>
Date: Sun, 28 Oct 2018 13:22:42 +0100
Subject: [PATCH 0066/1129] add maintainer das-g

---
 maintainers/maintainer-list.nix | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index 22ea07b9f118..63769cc60809 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -947,6 +947,11 @@
     github = "danielfullmer";
     name = "Daniel Fullmer";
   };
+  das-g = {
+    email = "nixpkgs@raphael.dasgupta.ch";
+    github = "das-g";
+    name = "Raphael Das Gupta";
+  };
   das_j = {
     email = "janne@hess.ooo";
     github = "dasJ";

From 83a65a91822413316300b7c3a21798133791dfaa Mon Sep 17 00:00:00 2001
From: FeepingCreature <default_357-line@yahoo.de>
Date: Sun, 28 Oct 2018 14:08:01 +0100
Subject: [PATCH 0067/1129] improve shell.nix warning messages

---
 nixos/modules/programs/shell.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/nixos/modules/programs/shell.nix b/nixos/modules/programs/shell.nix
index 6aa0262e3a4c..9842e2bef643 100644
--- a/nixos/modules/programs/shell.nix
+++ b/nixos/modules/programs/shell.nix
@@ -13,7 +13,7 @@ with lib;
         # Set up the per-user profile.
         mkdir -m 0755 -p "$NIX_USER_PROFILE_DIR"
         if [ "$(stat --printf '%u' "$NIX_USER_PROFILE_DIR")" != "$(id -u)" ]; then
-            echo "WARNING: bad ownership on $NIX_USER_PROFILE_DIR, should be $(id -u)" >&2
+            echo "WARNING: the per-user profile dir $NIX_USER_PROFILE_DIR should belong to user id $(id -u)" >&2
         fi
 
         if [ -w "$HOME" ]; then
@@ -35,7 +35,7 @@ with lib;
           NIX_USER_GCROOTS_DIR="/nix/var/nix/gcroots/per-user/$USER"
           mkdir -m 0755 -p "$NIX_USER_GCROOTS_DIR"
           if [ "$(stat --printf '%u' "$NIX_USER_GCROOTS_DIR")" != "$(id -u)" ]; then
-              echo "WARNING: bad ownership on $NIX_USER_GCROOTS_DIR, should be $(id -u)" >&2
+              echo "WARNING: the per-user gcroots dir $NIX_USER_GCROOTS_DIR should belong to user id $(id -u)" >&2
           fi
 
           # Set up a default Nix expression from which to install stuff.

From 3400c8098cf3a42938d0224c3a1734fb30648768 Mon Sep 17 00:00:00 2001
From: gnidorah <gnidorah@users.noreply.github.com>
Date: Sun, 28 Oct 2018 22:18:57 +0300
Subject: [PATCH 0068/1129] qtcurve: init at 1.9

---
 pkgs/misc/themes/qtcurve/default.nix | 51 ++++++++++++++++++++++++++++
 pkgs/top-level/all-packages.nix      |  2 ++
 2 files changed, 53 insertions(+)
 create mode 100644 pkgs/misc/themes/qtcurve/default.nix

diff --git a/pkgs/misc/themes/qtcurve/default.nix b/pkgs/misc/themes/qtcurve/default.nix
new file mode 100644
index 000000000000..54715c01a9ee
--- /dev/null
+++ b/pkgs/misc/themes/qtcurve/default.nix
@@ -0,0 +1,51 @@
+{ stdenv, fetchurl, cmake, extra-cmake-modules, pkgconfig
+, gtk2, qtbase, qtsvg, qtx11extras # Toolkit dependencies
+, karchive, kconfig, kconfigwidgets, kio, frameworkintegration
+, kguiaddons, ki18n, kwindowsystem, kdelibs4support, kiconthemes
+, libpthreadstubs, pcre, libXdmcp, libX11, libXau # X11 dependencies
+}:
+
+let
+  version = "1.9";
+in stdenv.mkDerivation {
+  name = "qtcurve-${version}";
+  src = fetchurl {
+    url = "http://download.kde.org/stable/qtcurve/qtcurve-${version}.tar.xz";
+    sha256 = "169gdny1cdld0qnx3nqvx568zjzdba4pwp3gxapc1hdh2cymw7r8";
+  };
+
+  enableParallelBuilding = true;
+
+  nativeBuildInputs = [ cmake extra-cmake-modules pkgconfig ];
+
+  buildInputs = [
+    gtk2
+    qtbase qtsvg qtx11extras
+    karchive kconfig kconfigwidgets kio kiconthemes kguiaddons ki18n
+    kwindowsystem kdelibs4support frameworkintegration
+    libpthreadstubs
+    pcre
+    libXdmcp libX11 libXau
+  ];
+
+  preConfigure = ''
+    for i in qt5/CMakeLists.txt qt5/config/CMakeLists.txt
+    do
+      substituteInPlace $i \
+        --replace "{_Qt5_PLUGIN_INSTALL_DIR}" "{KDE_INSTALL_QTPLUGINDIR}"
+    done
+    substituteInPlace CMakeLists.txt \
+      --replace \$\{GTK2_PREFIX\} $out
+    substituteInPlace gtk2/style/CMakeLists.txt \
+      --replace \$\{GTK2_LIBDIR\} $out/lib
+    patchShebangs tools/gen-version.sh
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/QtCurve/qtcurve;
+    description = "Widget styles for Qt5/Plasma 5 and gtk2";
+    platforms = platforms.linux;
+    license = licenses.lgpl21Plus;
+    maintainers = [ maintainers.gnidorah ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 4b6822b9af69..fc26e728b788 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -18124,6 +18124,8 @@ with pkgs;
 
   ptex = callPackage ../development/libraries/ptex {};
 
+  qtcurve = libsForQt5.callPackage ../misc/themes/qtcurve {};
+
   rssguard = libsForQt5.callPackage ../applications/networking/feedreaders/rssguard { };
 
   scudcloud = callPackage ../applications/networking/instant-messengers/scudcloud { };

From e7f2ce910219521c135592a843f03a73fe268874 Mon Sep 17 00:00:00 2001
From: Ignat Loskutov <ignat.loskutov@gmail.com>
Date: Mon, 29 Oct 2018 02:59:11 +0300
Subject: [PATCH 0069/1129] jemalloc: 5.0.1 -> 5.1.0

---
 pkgs/development/libraries/jemalloc/default.nix | 8 ++------
 1 file changed, 2 insertions(+), 6 deletions(-)

diff --git a/pkgs/development/libraries/jemalloc/default.nix b/pkgs/development/libraries/jemalloc/default.nix
index 40c06cbffdf0..8cb7c1f96733 100644
--- a/pkgs/development/libraries/jemalloc/default.nix
+++ b/pkgs/development/libraries/jemalloc/default.nix
@@ -1,10 +1,6 @@
 { stdenv, fetchurl, fetchpatch }:
 import ./common.nix {
   inherit stdenv fetchurl;
-  version = "5.0.1";
-  sha256 = "4814781d395b0ef093b21a08e8e6e0bd3dab8762f9935bbfb71679b0dea7c3e9";
-  patches = stdenv.lib.optional stdenv.isAarch64 (fetchpatch {
-    url = "https://patch-diff.githubusercontent.com/raw/jemalloc/jemalloc/pull/1035.patch";
-    sha256 = "02y0q3dp253bipxv4r954nqipbjbj92p6ww9bx5bk3d8pa81wkqq";
-  });
+  version = "5.1.0";
+  sha256 = "0s3jpcyhzia8d4k0xyc67is78kg416p9yc3c2f9w6fhhqqffd5jk";
 }

From 1bd7b98c7975136ddd6183a155e90688fd5b3e43 Mon Sep 17 00:00:00 2001
From: Matt McHenry <github@matt.mchenryfamily.org>
Date: Wed, 10 Oct 2018 12:54:53 -0400
Subject: [PATCH 0070/1129] openjdk: 10.0.2 -> 11.0.1

* the jre is no longer an official part of the jdk (jmod is
  recommended as a replacement when needing to create smaller runtime
  images)

* darwin continues to use zulu from azul

* apps that used 10 now use 11 (eclipse, bazel, josm)
---
 pkgs/applications/misc/josm/default.nix       |  6 +-
 .../compilers/openjdk/{10.nix => 11.nix}      | 70 ++++++-------------
 .../openjdk/darwin/{10.nix => 11.nix}         | 15 ++--
 pkgs/top-level/all-packages.nix               | 27 ++++---
 4 files changed, 42 insertions(+), 76 deletions(-)
 rename pkgs/development/compilers/openjdk/{10.nix => 11.nix} (67%)
 rename pkgs/development/compilers/openjdk/darwin/{10.nix => 11.nix} (79%)

diff --git a/pkgs/applications/misc/josm/default.nix b/pkgs/applications/misc/josm/default.nix
index 4f98ec1bba91..808ff2d6f610 100644
--- a/pkgs/applications/misc/josm/default.nix
+++ b/pkgs/applications/misc/josm/default.nix
@@ -1,4 +1,4 @@
-{ fetchurl, stdenv, makeDesktopItem, makeWrapper, unzip, jre10 }:
+{ fetchurl, stdenv, makeDesktopItem, makeWrapper, unzip, jdk11 }:
 
 stdenv.mkDerivation rec {
   name = "josm-${version}";
@@ -9,7 +9,7 @@ stdenv.mkDerivation rec {
     sha256 = "102dph3479qskzf72cpb9139pq9ifka6pzna1c6s5rs2il6mfvsb";
   };
 
-  buildInputs = [ jre10 makeWrapper ];
+  buildInputs = [ jdk11 makeWrapper ];
 
   desktopItem = makeDesktopItem {
     name = "josm";
@@ -25,7 +25,7 @@ stdenv.mkDerivation rec {
     mkdir -p $out/bin $out/share/java
     cp -v $src $out/share/java/josm.jar
 
-    makeWrapper ${jre10}/bin/java $out/bin/josm \
+    makeWrapper ${jdk11}/bin/java $out/bin/josm \
       --add-flags "-jar $out/share/java/josm.jar"
 
     mkdir -p $out/share/applications
diff --git a/pkgs/development/compilers/openjdk/10.nix b/pkgs/development/compilers/openjdk/11.nix
similarity index 67%
rename from pkgs/development/compilers/openjdk/10.nix
rename to pkgs/development/compilers/openjdk/11.nix
index 1c125fac62f1..e2d89f3ef728 100644
--- a/pkgs/development/compilers/openjdk/10.nix
+++ b/pkgs/development/compilers/openjdk/11.nix
@@ -1,4 +1,4 @@
-{ stdenv, lib, fetchurl, bash, cpio, pkgconfig, file, which, unzip, zip, cups, freetype
+{ stdenv, lib, fetchurl, bash, cpio, autoconf, pkgconfig, file, which, unzip, zip, cups, freetype
 , alsaLib, bootjdk, perl, liberation_ttf, fontconfig, zlib, lndir
 , libX11, libICE, libXrender, libXext, libXt, libXtst, libXi, libXinerama, libXcursor, libXrandr
 , libjpeg, giflib
@@ -10,31 +10,30 @@
 let
 
   /**
-   * The JRE libraries are in directories that depend on the CPU.
+   * The JDK libraries are in directories that depend on the CPU.
    */
   architecture =
     if stdenv.hostPlatform.system == "i686-linux" then
       "i386"
     else "amd64";
 
-  update = "10.0.2";
+  major = "11";
+  update = ".0.1";
   build = "13";
-  repover = "jdk-${update}+${build}";
+  repover = "jdk-${major}${update}+${build}";
   paxflags = if stdenv.isi686 then "msp" else "m";
 
-  openjdk10 = stdenv.mkDerivation {
-    name = "openjdk-${update}-b${build}";
+  openjdk = stdenv.mkDerivation {
+    name = "openjdk-${major}${update}-b${build}";
 
     src = fetchurl {
-      url = "http://hg.openjdk.java.net/jdk-updates/jdk10u/archive/${repover}.tar.gz";
-      sha256 = "0y7hyzgvn6z8gyp3h9xvxwj6zda899y6i629jn6yxqzj96q56jpk";
+      url = "http://hg.openjdk.java.net/jdk-updates/jdk${major}u/archive/${repover}.tar.gz";
+      sha256 = "1ri3fv67rvs9xxhc3ynklbprhxbdsgpwafbw6wqj950xy5crgysm";
     };
 
-    outputs = [ "out" "jre" ];
-
     nativeBuildInputs = [ pkgconfig ];
     buildInputs = [
-      cpio file which unzip zip perl bootjdk zlib cups freetype alsaLib
+      autoconf cpio file which unzip zip perl bootjdk zlib cups freetype alsaLib
       libjpeg giflib libX11 libICE libXext libXrender libXtst libXt libXtst
       libXi libXinerama libXcursor libXrandr lndir fontconfig
     ] ++ lib.optionals (!minimal && enableGnome2) [
@@ -55,12 +54,11 @@ let
 
       configureFlagsArray=(
         "--with-boot-jdk=${bootjdk.home}"
-        "--with-update-version=${update}"
+        "--with-update-version=${major}${update}"
         "--with-build-number=${build}"
         "--with-milestone=fcs"
         "--enable-unlimited-crypto"
         "--disable-debug-symbols"
-        "--disable-freetype-bundling"
         "--with-zlib=system"
         "--with-giflib=system"
         "--with-stdc++lib=dynamic"
@@ -86,7 +84,7 @@ let
     buildFlags = [ "all" ];
 
     installPhase = ''
-      mkdir -p $out/lib/openjdk $out/share $jre/lib/openjdk
+      mkdir -p $out/lib/openjdk $out/share
 
       cp -av build/*/images/jdk/* $out/lib/openjdk
 
@@ -101,57 +99,29 @@ let
       # jni.h expects jni_md.h to be in the header search path.
       ln -s $out/include/linux/*_md.h $out/include/
 
-      # Copy the JRE to a separate output and setup fallback fonts
-      cp -av build/*/images/jre $jre/lib/openjdk/
-      mkdir $out/lib/openjdk/jre
-      ${lib.optionalString (!minimal) ''
-        mkdir -p $jre/lib/openjdk/jre/lib/fonts/fallback
-        lndir ${liberation_ttf}/share/fonts/truetype $jre/lib/openjdk/jre/lib/fonts/fallback
-      ''}
-
       # Remove crap from the installation.
       rm -rf $out/lib/openjdk/demo
       ${lib.optionalString minimal ''
-        for d in $out/lib/openjdk/lib $jre/lib/openjdk/jre/lib; do
-          rm ''${d}/{libjsound,libjsoundalsa,libfontmanager}.so
-        done
+        rm $out/lib/openjdk/lib/{libjsound,libfontmanager}.so
       ''}
 
-      lndir $jre/lib/openjdk/jre $out/lib/openjdk/jre
-
       # Set PaX markings
-      exes=$(file $out/lib/openjdk/bin/* $jre/lib/openjdk/jre/bin/* 2> /dev/null | grep -E 'ELF.*(executable|shared object)' | sed -e 's/: .*$//')
+      exes=$(file $out/lib/openjdk/bin/* 2> /dev/null | grep -E 'ELF.*(executable|shared object)' | sed -e 's/: .*$//')
       echo "to mark: *$exes*"
       for file in $exes; do
         echo "marking *$file*"
         paxmark ${paxflags} "$file"
       done
 
-      # Remove duplicate binaries.
-      for i in $(cd $out/lib/openjdk/bin && echo *); do
-        if [ "$i" = java ]; then continue; fi
-        if cmp -s $out/lib/openjdk/bin/$i $jre/lib/openjdk/jre/bin/$i; then
-          ln -sfn $jre/lib/openjdk/jre/bin/$i $out/lib/openjdk/bin/$i
-        fi
-      done
-
       ln -s $out/lib/openjdk/bin $out/bin
-      ln -s $jre/lib/openjdk/jre/bin $jre/bin
-      ln -s $jre/lib/openjdk/jre $out/jre
     '';
 
-    # FIXME: this is unnecessary once the multiple-outputs branch is merged.
     preFixup = ''
-      prefix=$jre stripDirs "$STRIP" "$stripDebugList" "''${stripDebugFlags:--S}"
-      patchELF $jre
-      propagatedBuildInputs+=" $jre"
-
-      # Propagate the setJavaClassPath setup hook from the JRE so that
-      # any package that depends on the JRE has $CLASSPATH set up
-      # properly.
-      mkdir -p $jre/nix-support
+      # Propagate the setJavaClassPath setup hook so that any package
+      # that depends on the JDK has $CLASSPATH set up properly.
+      mkdir -p $out/nix-support
       #TODO or printWords?  cf https://github.com/NixOS/nixpkgs/pull/27427#issuecomment-317293040
-      echo -n "${setJavaClassPath}" > $jre/nix-support/propagated-build-inputs
+      echo -n "${setJavaClassPath}" > $out/nix-support/propagated-build-inputs
 
       # Set JAVA_HOME automatically.
       mkdir -p $out/nix-support
@@ -196,7 +166,7 @@ let
 
     passthru = {
       inherit architecture;
-      home = "${openjdk10}/lib/openjdk";
+      home = "${openjdk}/lib/openjdk";
     };
   };
-in openjdk10
+in openjdk
diff --git a/pkgs/development/compilers/openjdk/darwin/10.nix b/pkgs/development/compilers/openjdk/darwin/11.nix
similarity index 79%
rename from pkgs/development/compilers/openjdk/darwin/10.nix
rename to pkgs/development/compilers/openjdk/darwin/11.nix
index 4969c12bff26..61c2d57423e4 100644
--- a/pkgs/development/compilers/openjdk/darwin/10.nix
+++ b/pkgs/development/compilers/openjdk/darwin/11.nix
@@ -6,13 +6,13 @@ let
     sha256 = "0nk7m0lgcbsvldq2wbfni2pzq8h818523z912i7v8hdcij5s48c0";
   };
 
-  jdk = stdenv.mkDerivation {
-    name = "zulu10.3+5-jdk10";
+  jdk = stdenv.mkDerivation rec {
+    name = "zulu11.2.3-jdk11.0.1";
 
     src = fetchurl {
-      url = https://cdn.azul.com/zulu/bin/zulu10.3+5-jdk10.0.2-macosx_x64.zip;
-      sha256 = "05pxfjn8fqw6ddr8m5hzyphwzqgrq8w6b4h3lwc1s7ymh05xmspz";
-      curlOpts = "-H Referer:https://www.azul.com/downloads/zulu/zulu-linux/";
+      url = "https://cdn.azul.com/zulu/bin/${name}-macosx_x64.tar.gz";
+      sha256 = "1jxnxmy79inwf3146ygry1mzv3dj6yrzqll16j7dpr91x1p3dpqy";
+      curlOpts = "-H Referer:https://www.azul.com/downloads/zulu/zulu-mac/";
     };
 
     buildInputs = [ unzip freetype ];
@@ -34,8 +34,8 @@ let
     '';
 
     preFixup = ''
-      # Propagate the setJavaClassPath setup hook from the JRE so that
-      # any package that depends on the JRE has $CLASSPATH set up
+      # Propagate the setJavaClassPath setup hook from the JDK so that
+      # any package that depends on the JDK has $CLASSPATH set up
       # properly.
       mkdir -p $out/nix-support
       printWords ${setJavaClassPath} > $out/nix-support/propagated-build-inputs
@@ -49,7 +49,6 @@ let
     '';
 
     passthru = {
-      jre = jdk;
       home = jdk;
     };
 
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 4c888fe1f5e5..91e329dc8f92 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -6940,11 +6940,11 @@ with pkgs;
         inherit (gnome2) GConf gnome_vfs;
       };
 
-  openjdk10 =
+  openjdk11 =
     if stdenv.isDarwin then
-      callPackage ../development/compilers/openjdk/darwin/10.nix { }
+      callPackage ../development/compilers/openjdk/darwin/11.nix { }
     else
-      callPackage ../development/compilers/openjdk/10.nix {
+      callPackage ../development/compilers/openjdk/11.nix {
         inherit (gnome2) GConf gnome_vfs;
       };
 
@@ -6964,17 +6964,14 @@ with pkgs;
         (lib.addMetaAttrs { outputsToInstall = [ "jre" ]; }
           ((openjdk8.override { minimal = true; }).jre // { outputs = [ "jre" ]; }));
 
-  jdk10 = openjdk10 // { outputs = [ "out" ]; };
-  jre10 = lib.setName "openjre-${lib.getVersion pkgs.openjdk10.jre}"
-    (lib.addMetaAttrs { outputsToInstall = [ "jre" ]; }
-      (openjdk10.jre // { outputs = [ "jre" ]; }));
-  jre10_headless =
+  jdk11 = openjdk11 // { outputs = [ "out" ]; };
+  jdk11_headless =
     if stdenv.isDarwin then
-      jre10
+      jdk11
     else
-      lib.setName "openjre-${lib.getVersion pkgs.openjdk10.jre}-headless"
-        (lib.addMetaAttrs { outputsToInstall = [ "jre" ]; }
-          ((openjdk10.override { minimal = true; }).jre // { outputs = [ "jre" ]; }));
+      lib.setName "openjdk-${lib.getVersion pkgs.openjdk11}-headless"
+        (lib.addMetaAttrs {}
+          ((openjdk11.override { minimal = true; }) // {}));
 
   jdk = jdk8;
   jre = jre8;
@@ -8098,10 +8095,10 @@ with pkgs;
     inherit (darwin) cctools;
     inherit (darwin.apple_sdk.frameworks) CoreFoundation CoreServices Foundation;
   };
-  bazel_jdk10 = callPackage ../development/tools/build-managers/bazel {
+  bazel_jdk11 = callPackage ../development/tools/build-managers/bazel {
     inherit (darwin) cctools;
     inherit (darwin.apple_sdk.frameworks) CoreFoundation CoreServices Foundation;
-    runJdk = jdk10;
+    runJdk = jdk11;
   };
 
   bazel-buildtools = callPackage ../development/tools/build-managers/bazel/buildtools { };
@@ -16172,7 +16169,7 @@ with pkgs;
   eaglemode = callPackage ../applications/misc/eaglemode { };
 
   eclipses = recurseIntoAttrs (callPackage ../applications/editors/eclipse {
-    jdk = jdk10;
+    jdk = jdk11;
   });
 
   ecs-agent = callPackage ../applications/virtualization/ecs-agent { };

From 36d695f696e73ff1be79b48e01df663eaac22e3b Mon Sep 17 00:00:00 2001
From: Aaron Andersen <aaron@fosslib.net>
Date: Fri, 7 Sep 2018 17:49:38 -0400
Subject: [PATCH 0071/1129] filesystems: escape spaces in fstab with \040

---
 nixos/modules/tasks/filesystems.nix | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/nixos/modules/tasks/filesystems.nix b/nixos/modules/tasks/filesystems.nix
index b3690fad1a6a..9e4057b50897 100644
--- a/nixos/modules/tasks/filesystems.nix
+++ b/nixos/modules/tasks/filesystems.nix
@@ -230,6 +230,8 @@ in
       let
         fsToSkipCheck = [ "none" "bindfs" "btrfs" "zfs" "tmpfs" "nfs" "vboxsf" "glusterfs" ];
         skipCheck = fs: fs.noCheck || fs.device == "none" || builtins.elem fs.fsType fsToSkipCheck;
+        # https://wiki.archlinux.org/index.php/fstab#Filepath_spaces
+        escape = string: builtins.replaceStrings [ " " ] [ "\\040" ] string;
       in ''
         # This is a generated file.  Do not edit!
         #
@@ -238,10 +240,10 @@ in
 
         # Filesystems.
         ${concatMapStrings (fs:
-            (if fs.device != null then fs.device
-             else if fs.label != null then "/dev/disk/by-label/${fs.label}"
+            (if fs.device != null then escape fs.device
+             else if fs.label != null then "/dev/disk/by-label/${escape fs.label}"
              else throw "No device specified for mount point ‘${fs.mountPoint}’.")
-            + " " + fs.mountPoint
+            + " " + escape fs.mountPoint
             + " " + fs.fsType
             + " " + builtins.concatStringsSep "," fs.options
             + " 0"

From 094105efa10dcc35e143ada74edfcf1ea210c786 Mon Sep 17 00:00:00 2001
From: Mateusz Wykurz <wykurz@gmail.com>
Date: Sat, 20 Oct 2018 14:18:27 -0400
Subject: [PATCH 0072/1129] cpuset: init at 1.5.8

---
 pkgs/os-specific/linux/cpuset/default.nix | 27 +++++++++++++++++++++++
 pkgs/top-level/all-packages.nix           |  2 ++
 2 files changed, 29 insertions(+)
 create mode 100644 pkgs/os-specific/linux/cpuset/default.nix

diff --git a/pkgs/os-specific/linux/cpuset/default.nix b/pkgs/os-specific/linux/cpuset/default.nix
new file mode 100644
index 000000000000..5791145d52af
--- /dev/null
+++ b/pkgs/os-specific/linux/cpuset/default.nix
@@ -0,0 +1,27 @@
+{ stdenv
+, fetchFromGitHub
+, python2Packages
+}:
+
+python2Packages.buildPythonApplication rec {
+  pname = "cpuset";
+  version = "1.5.8";
+
+  propagatedBuildInputs = [ ];
+
+  makeFlags = [ "prefix=$(out)" ];
+
+  src = fetchFromGitHub {
+    owner = "wykurz";
+    repo = "cpuset";
+    rev = "v${version}";
+    sha256 = "19fl2sn470yrnm2q508giggjwy5b6r2gd94gvwfbdlhf0r9dsbbm";
+  };
+
+  meta = with stdenv.lib; {
+    description = "Cpuset is a Python application that forms a wrapper around the standard Linux filesystem calls to make using the cpusets facilities in the Linux kernel easier.";
+    homepage    = https://github.com/wykurz/cpuset;
+    license     = licenses.gpl2;
+    maintainers = with maintainers; [ wykurz ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 33f30c2126c8..4ede2757a0c9 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -14011,6 +14011,8 @@ with pkgs;
 
   cpufrequtils = callPackage ../os-specific/linux/cpufrequtils { };
 
+  cpuset = callPackage ../os-specific/linux/cpuset { };
+
   criu = callPackage ../os-specific/linux/criu { };
 
   cryptsetup = callPackage ../os-specific/linux/cryptsetup { };

From d593c4d4c9e2e75e329a6341a472910a4ddcdf56 Mon Sep 17 00:00:00 2001
From: Ding Xiang Fei <dingxiangfei2009@gmail.com>
Date: Sun, 7 Oct 2018 19:17:42 +0800
Subject: [PATCH 0073/1129] linuxPackages.ndiswrapper: 1.59 -> 1.62-pre, fix
 build

---
 .../os-specific/linux/ndiswrapper/default.nix | 28 +++++++++++--------
 .../linux/ndiswrapper/no-sbin.patch           |  9 +++---
 2 files changed, 22 insertions(+), 15 deletions(-)

diff --git a/pkgs/os-specific/linux/ndiswrapper/default.nix b/pkgs/os-specific/linux/ndiswrapper/default.nix
index e989a7837f9e..fc9e6ab00dd9 100644
--- a/pkgs/os-specific/linux/ndiswrapper/default.nix
+++ b/pkgs/os-specific/linux/ndiswrapper/default.nix
@@ -1,16 +1,20 @@
-{ stdenv, fetchurl, kernel, perl, kmod }:
-
+{ stdenv, fetchFromGitHub, kernel, perl, kmod, libelf }:
+let
+  version = "1.62-pre";
+in
 stdenv.mkDerivation {
-  name = "ndiswrapper-1.59-${kernel.version}";
+  name = "ndiswrapper-${version}-${kernel.version}";
+  inherit version;
 
   hardeningDisable = [ "pic" ];
 
   patches = [ ./no-sbin.patch ];
 
-  # need at least .config and include 
+  # need at least .config and include
   kernel = kernel.dev;
 
   buildPhase = "
+    cd ndiswrapper
     echo make KBUILD=$(echo \$kernel/lib/modules/*/build);
     echo -n $kernel/lib/modules/*/build > kbuild_path
     export PATH=${kmod}/sbin:$PATH
@@ -26,18 +30,20 @@ stdenv.mkDerivation {
     patchShebangs $out/sbin
   '';
 
-  # should we use unstable? 
-  src = fetchurl {
-    url = mirror://sourceforge/ndiswrapper/ndiswrapper-1.59.tar.gz;
-    sha256 = "1g6lynccyg4m7gd7vhy44pypsn8ifmibq6rqgvc672pwngzx79b6";
+  # should we use unstable?
+  src = fetchFromGitHub {
+    owner = "pgiri";
+    repo = "ndiswrapper";
+    rev = "f4d16afb29ab04408d02e38d4ea1148807778e21";
+    sha256 = "0iaw0vhchmqf1yh14v4a6whnbg4sx1hag8a4hrsh4fzgw9fx0ij4";
   };
 
-  buildInputs = [ perl ];
+  buildInputs = [ perl libelf ];
 
-  meta = { 
+  meta = {
     description = "Ndis driver wrapper for the Linux kernel";
     homepage = https://sourceforge.net/projects/ndiswrapper;
     license = "GPL";
-    broken = true;
+    platforms = [ "i686-linux" "x86_64-linux" ];
   };
 }
diff --git a/pkgs/os-specific/linux/ndiswrapper/no-sbin.patch b/pkgs/os-specific/linux/ndiswrapper/no-sbin.patch
index cfc048d772bd..34965540d248 100644
--- a/pkgs/os-specific/linux/ndiswrapper/no-sbin.patch
+++ b/pkgs/os-specific/linux/ndiswrapper/no-sbin.patch
@@ -1,7 +1,8 @@
-diff -Naur ndiswrapper-1.59-orig/driver/Makefile ndiswrapper-1.59/driver/Makefile
---- ndiswrapper-1.59-orig/driver/Makefile	2013-11-28 14:42:35.000000000 -0500
-+++ ndiswrapper-1.59/driver/Makefile	2014-01-04 18:31:43.242377375 -0500
-@@ -191,7 +191,7 @@
+diff --git a/ndiswrapper/driver/Makefile b/ndiswrapper/driver/Makefile
+index bf42f7bc..ad23aa2d 100644
+--- a/ndiswrapper/driver/Makefile
++++ b/ndiswrapper/driver/Makefile
+@@ -191,7 +191,7 @@ clean:
  	rm -rf .tmp_versions
  
  install: config_check $(MODULE)

From a57bbf4e6319ca5c9a22968fc74845d29d3c6f80 Mon Sep 17 00:00:00 2001
From: Pavel Goran <me@pvgoran.name>
Date: Mon, 29 Oct 2018 18:26:22 +0700
Subject: [PATCH 0074/1129] nixos/tomcat: add purifyOnStart option

With this option enabled, before creating file/directories/symlinks in baseDir
according to configuration, old occurences of them are removed.

This prevents remainders of an old configuration (libraries, webapps, you name
it) from persisting after activating a new configuration.
---
 nixos/modules/services/web-servers/tomcat.nix | 27 ++++++++++++++++++-
 1 file changed, 26 insertions(+), 1 deletion(-)

diff --git a/nixos/modules/services/web-servers/tomcat.nix b/nixos/modules/services/web-servers/tomcat.nix
index be54e9255c78..68261c50324d 100644
--- a/nixos/modules/services/web-servers/tomcat.nix
+++ b/nixos/modules/services/web-servers/tomcat.nix
@@ -31,10 +31,26 @@ in
         '';
       };
 
+      purifyOnStart = mkOption {
+        type = types.bool;
+        default = false;
+        description = ''
+          On startup, the `baseDir` directory is populated with various files,
+          subdirectories and symlinks. If this option is enabled, these items
+          (except for the `logs` and `work` subdirectories) are first removed.
+          This prevents interference from remainders of an old configuration
+          (libraries, webapps, etc.), so it's recommended to enable this option.
+        '';
+      };
+
       baseDir = mkOption {
         type = lib.types.path;
         default = "/var/tomcat";
-        description = "Location where Tomcat stores configuration files, webapplications and logfiles";
+        description = ''
+          Location where Tomcat stores configuration files, web applications
+          and logfiles. Note that it is partially cleared on each service startup
+          if `purifyOnStart` is enabled.
+        '';
       };
 
       logDirs = mkOption {
@@ -197,6 +213,15 @@ in
       after = [ "network.target" ];
 
       preStart = ''
+        ${lib.optionalString cfg.purifyOnStart ''
+          # Delete most directories/symlinks we create from the existing base directory,
+          # to get rid of remainders of an old configuration.
+          # The list of directories to delete is taken from the "mkdir" command below,
+          # excluding "logs" (because logs are valuable) and "work" (because normally
+          # session files are there), and additionally including "bin".
+          rm -rf ${cfg.baseDir}/{conf,virtualhosts,temp,lib,shared/lib,webapps,bin}
+        ''}
+
         # Create the base directory
         mkdir -p \
           ${cfg.baseDir}/{conf,virtualhosts,logs,temp,lib,shared/lib,webapps,work}

From b79dc80b2f57db784589deb773feb097f14b2e3a Mon Sep 17 00:00:00 2001
From: Cole Mickens <cole.mickens@gmail.com>
Date: Mon, 29 Oct 2018 05:23:42 -0700
Subject: [PATCH 0075/1129] ffmpeg: enable libdrm

---
 pkgs/development/libraries/ffmpeg/generic.nix | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/libraries/ffmpeg/generic.nix b/pkgs/development/libraries/ffmpeg/generic.nix
index 7c3b3447d613..d11ef732a01f 100644
--- a/pkgs/development/libraries/ffmpeg/generic.nix
+++ b/pkgs/development/libraries/ffmpeg/generic.nix
@@ -1,6 +1,6 @@
 { stdenv, fetchurl, pkgconfig, perl, texinfo, yasm
 , alsaLib, bzip2, fontconfig, freetype, gnutls, libiconv, lame, libass, libogg
-, libssh, libtheora, libva, libvorbis, libvpx, lzma, libpulseaudio, soxr
+, libssh, libtheora, libva, libdrm, libvorbis, libvpx, lzma, libpulseaudio, soxr
 , x264, x265, xvidcore, zlib, libopus, speex
 , openglSupport ? false, libGLU_combined ? null
 # Build options
@@ -130,6 +130,7 @@ stdenv.mkDerivation rec {
       "--enable-libtheora"
       (ifMinVer "2.1" "--enable-libssh")
       (ifMinVer "0.6" (enableFeature vaapiSupport "vaapi"))
+      (ifMinVer "3.4" (enableFeature vaapiSupport "libdrm"))
       "--enable-vdpau"
       "--enable-libvorbis"
       (ifMinVer "0.6" (enableFeature vpxSupport "libvpx"))
@@ -165,6 +166,7 @@ stdenv.mkDerivation rec {
     ++ optional vpxSupport libvpx
     ++ optionals (!isDarwin && !isAarch32) [ libpulseaudio ] # Need to be fixed on Darwin and ARM
     ++ optional ((isLinux || isFreeBSD) && !isAarch32) libva
+    ++ optional ((isLinux || isFreeBSD) && !isAarch32) libdrm
     ++ optional isLinux alsaLib
     ++ optionals isDarwin darwinFrameworks
     ++ optional vdpauSupport libvdpau

From a586c14cc436b01673af2738b702dbcea18fc123 Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Fri, 26 Oct 2018 13:58:18 +0000
Subject: [PATCH 0076/1129] python3Packages.priority: init at 1.3.0

---
 .../python-modules/priority/default.nix       | 23 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 25 insertions(+)
 create mode 100644 pkgs/development/python-modules/priority/default.nix

diff --git a/pkgs/development/python-modules/priority/default.nix b/pkgs/development/python-modules/priority/default.nix
new file mode 100644
index 000000000000..90b58b665de8
--- /dev/null
+++ b/pkgs/development/python-modules/priority/default.nix
@@ -0,0 +1,23 @@
+{ lib, buildPythonPackage, fetchPypi, pytest, hypothesis }:
+
+buildPythonPackage rec {
+  pname = "priority";
+  version = "1.3.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1gpzn9k9zgks0iw5wdmad9b4dry8haiz2sbp6gycpjkzdld9dhbb";
+  };
+
+  checkInputs = [ pytest hypothesis ];
+  checkPhase = ''
+    PYTHONPATH="src:$PYTHONPATH" pytest
+  '';
+
+  meta = with lib; {
+    homepage = https://python-hyper.org/priority/;
+    description = "A pure-Python implementation of the HTTP/2 priority tree";
+    license = licenses.mit;
+    maintainers = [ maintainers.qyliss ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 043d20d04822..e732eb38bb38 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -1856,6 +1856,8 @@ in {
 
   poyo = callPackage ../development/python-modules/poyo { };
 
+  priority = callPackage ../development/python-modules/priority { };
+
   prov = callPackage ../development/python-modules/prov { };
 
   pudb = callPackage ../development/python-modules/pudb { };

From fdf626944c8ebf4d607aa43177aa47158922baf3 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Fri, 26 Oct 2018 22:57:46 -0500
Subject: [PATCH 0077/1129] xapian: 1.4.7 -> 1.4.8, drop included patch

---
 pkgs/development/libraries/xapian/default.nix |  9 +-----
 .../xapian/fix-notmuch-tagging.patch          | 31 -------------------
 2 files changed, 1 insertion(+), 39 deletions(-)
 delete mode 100644 pkgs/development/libraries/xapian/fix-notmuch-tagging.patch

diff --git a/pkgs/development/libraries/xapian/default.nix b/pkgs/development/libraries/xapian/default.nix
index f93f7ed87460..7b92c1c66cd7 100644
--- a/pkgs/development/libraries/xapian/default.nix
+++ b/pkgs/development/libraries/xapian/default.nix
@@ -11,13 +11,6 @@ let
       inherit sha256;
     };
 
-    patches = stdenv.lib.optional (version == "1.4.7") [
-      # fix notmuch build, see https://notmuchmail.org/faq/#index12h2
-      # cannot fetchpatch this because base directory differs
-      # TODO: remove on next xapian update
-      ./fix-notmuch-tagging.patch
-    ];
-
     outputs = [ "out" "man" "doc" ];
 
     buildInputs = [ libuuid zlib ];
@@ -43,5 +36,5 @@ let
 in {
   # xapian-ruby needs 1.2.22 as of 2017-05-06
   xapian_1_2_22 = generic "1.2.22" "0zsji22n0s7cdnbgj0kpil05a6bgm5cfv0mvx12d8ydg7z58g6r6";
-  xapian_1_4 = generic "1.4.7" "1lxmlds3v5s1gng9nk1rvmln1zcksrw5ds509y0glylwch5qmw0k";
+  xapian_1_4 = generic "1.4.8" "0528841hn5lddaa317ax3i3d01zf1izpzh4njiz6s84mxpn06q6s";
 }
diff --git a/pkgs/development/libraries/xapian/fix-notmuch-tagging.patch b/pkgs/development/libraries/xapian/fix-notmuch-tagging.patch
deleted file mode 100644
index 6deae76d2aa7..000000000000
--- a/pkgs/development/libraries/xapian/fix-notmuch-tagging.patch
+++ /dev/null
@@ -1,31 +0,0 @@
-From f9e6f45b1c8f66bca8a3387f371b20d434b23a7d Mon Sep 17 00:00:00 2001
-From: Olly Betts <olly@survex.com>
-Date: Thu, 26 Jul 2018 17:26:52 +1200
-Subject: [PATCH 1/1] Revert "Enable open_nearby_postlist for writable
- databases"
-
-The amended check isn't conservative enough as there may be postlist
-changes in the inverter while the table is unmodified.  This breaks
-testcase T150-tagging.sh in notmuch's testsuite, reported by David
-Bremner.
-
-This reverts commit 5489fb2f838c0f0b0a593b4c17df282a93a1fe5a.
----
- xapian-core/backends/glass/glass_postlist.cc | 2 +-
- 1 file changed, 1 insertion(+), 1 deletion(-)
-
-diff --git a/xapian-core/backends/glass/glass_postlist.cc b/xapian-core/backends/glass/glass_postlist.cc
-index 80e578b85..a47f14a68 100644
---- a/backends/glass/glass_postlist.cc
-+++ b/backends/glass/glass_postlist.cc
-@@ -759,7 +759,7 @@ GlassPostList::open_nearby_postlist(const std::string & term_,
-     (void)need_pos;
-     if (term_.empty())
- 	RETURN(NULL);
--    if (!this_db.get() || this_db->postlist_table.is_modified())
-+    if (!this_db.get() || this_db->postlist_table.is_writable())
- 	RETURN(NULL);
-     RETURN(new GlassPostList(this_db, term_, cursor->clone()));
- }
--- 
-2.11.0

From 2e76bf06d8940ac6bf5490b81f9cc654b913679c Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Thu, 13 Sep 2018 07:04:54 -0500
Subject: [PATCH 0078/1129] upower: 0.99.7 -> 0.99.8

(cherry picked from commit 67ac9c649ffc036c49006191c64555eae2e6012f)
---
 pkgs/os-specific/linux/upower/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/os-specific/linux/upower/default.nix b/pkgs/os-specific/linux/upower/default.nix
index 629f61bf5b16..9525c4d9c15c 100644
--- a/pkgs/os-specific/linux/upower/default.nix
+++ b/pkgs/os-specific/linux/upower/default.nix
@@ -4,11 +4,11 @@
 }:
 
 stdenv.mkDerivation rec {
-  name = "upower-0.99.7";
+  name = "upower-0.99.8";
 
   src = fetchurl {
-    url = "https://upower.freedesktop.org/releases/${name}.tar.xz";
-    sha256 = "00d4830yvg84brdhz4kn60lr3r8rn2y8gdbhmhxm78i5mgvc5g14";
+    url = https://gitlab.freedesktop.org/upower/upower/uploads/9125ab7ee96fdc4ecc68cfefb50c1cab/upower-0.99.8.tar.xz;
+    sha256 = "00lzr0vyxz5lvmgya48gdb2cdgmfdim4b34jlfdyqakk1i9sl8xv";
   };
 
   buildInputs =

From b5bac7d8a8c155a7b1fe1f3868fd876125e02086 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Thu, 25 Oct 2018 13:52:46 -0500
Subject: [PATCH 0079/1129] upower: 0.99.8 -> 0.99.9

---
 pkgs/os-specific/linux/upower/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/os-specific/linux/upower/default.nix b/pkgs/os-specific/linux/upower/default.nix
index 9525c4d9c15c..6c6e411000ac 100644
--- a/pkgs/os-specific/linux/upower/default.nix
+++ b/pkgs/os-specific/linux/upower/default.nix
@@ -4,11 +4,11 @@
 }:
 
 stdenv.mkDerivation rec {
-  name = "upower-0.99.8";
+  name = "upower-0.99.9";
 
   src = fetchurl {
-    url = https://gitlab.freedesktop.org/upower/upower/uploads/9125ab7ee96fdc4ecc68cfefb50c1cab/upower-0.99.8.tar.xz;
-    sha256 = "00lzr0vyxz5lvmgya48gdb2cdgmfdim4b34jlfdyqakk1i9sl8xv";
+    url = https://gitlab.freedesktop.org/upower/upower/uploads/2282c7c0e53fb31816b824c9d1f547e8/upower-0.99.9.tar.xz;
+    sha256 = "046ix7j7hmb7ycv8v54668kjsrgjhzwxn299c1d87vdnkd38kfh1";
   };
 
   buildInputs =

From d7e4c49ffc4c3879bc2edb287f0758c17b0e00e3 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Fri, 12 Oct 2018 16:41:53 -0500
Subject: [PATCH 0080/1129] nixos/upower: lockdown service using upstream
 settings

---
 nixos/modules/services/hardware/upower.nix | 26 ++++++++++++++++++++++
 1 file changed, 26 insertions(+)

diff --git a/nixos/modules/services/hardware/upower.nix b/nixos/modules/services/hardware/upower.nix
index 2198842a4511..1da47349c077 100644
--- a/nixos/modules/services/hardware/upower.nix
+++ b/nixos/modules/services/hardware/upower.nix
@@ -56,6 +56,32 @@ in
           { Type = "dbus";
             BusName = "org.freedesktop.UPower";
             ExecStart = "@${cfg.package}/libexec/upowerd upowerd";
+            Restart = "on-failure";
+            # Upstream lockdown:
+            # Filesystem lockdown
+            ProtectSystem = "strict";
+            # Needed by keyboard backlight support
+            ProtectKernelTunables = false;
+            ProtectControlGroups = true;
+            ReadWritePaths = "/var/lib/upower";
+            ProtectHome = true;
+            PrivateTmp = true;
+
+            # Network
+            # PrivateNetwork=true would block udev's netlink socket
+            RestrictAddressFamilies = "AF_UNIX AF_NETLINK";
+
+            # Execute Mappings
+            MemoryDenyWriteExecute = true;
+
+            # Modules
+            ProtectKernelModules = true;
+
+            # Real-time
+            RestrictRealtime = true;
+
+            # Privilege escalation
+            NoNewPrivileges = true;
           };
       };
 

From efca8b4b97cab7653cc369973fb6267d160c494a Mon Sep 17 00:00:00 2001
From: Patrick Hilhorst <git@hilhorst.be>
Date: Wed, 6 Jun 2018 22:04:35 +0200
Subject: [PATCH 0081/1129] make-derivation: use pname-version as default name
 if both are present

---
 pkgs/stdenv/generic/make-derivation.nix | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/pkgs/stdenv/generic/make-derivation.nix b/pkgs/stdenv/generic/make-derivation.nix
index e06faed30a1e..8fd58c3cbe91 100644
--- a/pkgs/stdenv/generic/make-derivation.nix
+++ b/pkgs/stdenv/generic/make-derivation.nix
@@ -12,7 +12,9 @@ rec {
   # * https://nixos.org/nix/manual/#ssec-derivation
   #   Explanation about derivations in general
   mkDerivation =
-    { name ? ""
+    { name ? if builtins.hasAttr "pname" attrs && builtins.hasAttr "version" attrs
+        then "${attrs.pname}-${attrs.version}"
+        else ""
 
     # These types of dependencies are all exhaustively documented in
     # the "Specifying Dependencies" section of the "Standard

From 149a55eca77279c683a48d274a2f295d8027977c Mon Sep 17 00:00:00 2001
From: Patrick Hilhorst <git@hilhorst.be>
Date: Thu, 7 Jun 2018 16:16:14 +0200
Subject: [PATCH 0082/1129] make-derivation: get position info from version

---
 pkgs/stdenv/generic/make-derivation.nix | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/pkgs/stdenv/generic/make-derivation.nix b/pkgs/stdenv/generic/make-derivation.nix
index 8fd58c3cbe91..dcf73a38a1d7 100644
--- a/pkgs/stdenv/generic/make-derivation.nix
+++ b/pkgs/stdenv/generic/make-derivation.nix
@@ -67,6 +67,8 @@ rec {
     , pos ? # position used in error messages and for meta.position
         (if attrs.meta.description or null != null
           then builtins.unsafeGetAttrPos "description" attrs.meta
+          else if attrs.version or null != null
+          then builtins.unsafeGetAttrPos "version" attrs
           else builtins.unsafeGetAttrPos "name" attrs)
     , separateDebugInfo ? false
     , outputs ? [ "out" ]

From 2962f94fec198cd378471e2b6acc89d0af6ae226 Mon Sep 17 00:00:00 2001
From: Patrick Hilhorst <git@hilhorst.be>
Date: Mon, 29 Oct 2018 14:58:12 +0100
Subject: [PATCH 0083/1129] make-derivation: add check that the name is
 consistent with pname and version

---
 pkgs/stdenv/generic/make-derivation.nix | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/pkgs/stdenv/generic/make-derivation.nix b/pkgs/stdenv/generic/make-derivation.nix
index dcf73a38a1d7..6f31e09b1251 100644
--- a/pkgs/stdenv/generic/make-derivation.nix
+++ b/pkgs/stdenv/generic/make-derivation.nix
@@ -82,6 +82,10 @@ rec {
 
     , ... } @ attrs:
 
+    # Check that the name is consistent with pname and version:
+    assert lib.lists.all (name: builtins.hasAttr name attrs) ["name" "pname" "version"]
+      -> lib.strings.hasSuffix "${attrs.pname}-${attrs.version}" attrs.name;
+
     let
       # TODO(@oxij, @Ericson2314): This is here to keep the old semantics, remove when
       # no package has `doCheck = true`.

From 5be927db142448207c6a1d0c6e58ac5eb2af1fc5 Mon Sep 17 00:00:00 2001
From: Patrick Hilhorst <git@hilhorst.be>
Date: Mon, 29 Oct 2018 15:17:13 +0100
Subject: [PATCH 0084/1129] make-derivation: use `?` instead of
 `builtins.hasAttr`

As suggested by @edolstra
---
 pkgs/stdenv/generic/make-derivation.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/stdenv/generic/make-derivation.nix b/pkgs/stdenv/generic/make-derivation.nix
index 6f31e09b1251..9f6fee937101 100644
--- a/pkgs/stdenv/generic/make-derivation.nix
+++ b/pkgs/stdenv/generic/make-derivation.nix
@@ -12,7 +12,7 @@ rec {
   # * https://nixos.org/nix/manual/#ssec-derivation
   #   Explanation about derivations in general
   mkDerivation =
-    { name ? if builtins.hasAttr "pname" attrs && builtins.hasAttr "version" attrs
+    { name ? if attrs ? pname && attrs ? version
         then "${attrs.pname}-${attrs.version}"
         else ""
 

From c7e026bec483582bf2b8ac624519555f9476751c Mon Sep 17 00:00:00 2001
From: Patrick Hilhorst <git@hilhorst.be>
Date: Mon, 29 Oct 2018 18:25:59 +0100
Subject: [PATCH 0085/1129] make-derivation: use `lib.assertMsg`

As suggested by @Profpatsch
---
 pkgs/stdenv/generic/make-derivation.nix | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/pkgs/stdenv/generic/make-derivation.nix b/pkgs/stdenv/generic/make-derivation.nix
index 9f6fee937101..2ff7db947fe0 100644
--- a/pkgs/stdenv/generic/make-derivation.nix
+++ b/pkgs/stdenv/generic/make-derivation.nix
@@ -83,8 +83,10 @@ rec {
     , ... } @ attrs:
 
     # Check that the name is consistent with pname and version:
-    assert lib.lists.all (name: builtins.hasAttr name attrs) ["name" "pname" "version"]
-      -> lib.strings.hasSuffix "${attrs.pname}-${attrs.version}" attrs.name;
+    assert lib.assertMsg
+      (lib.lists.all (name: builtins.hasAttr name attrs) ["name" "pname" "version"]
+        -> lib.strings.hasSuffix "${attrs.pname}-${attrs.version}" attrs.name)
+      "mkDerivation: `name` must be consistent with `pname-version`";
 
     let
       # TODO(@oxij, @Ericson2314): This is here to keep the old semantics, remove when

From 79f148c2e0c12a41f377dcf6b5e74022de28857c Mon Sep 17 00:00:00 2001
From: timor <timor.dd@googlemail.com>
Date: Mon, 29 Oct 2018 18:28:51 +0100
Subject: [PATCH 0086/1129] libmtp: 1.1.15 -> 1.1.16

This fixes the problem of connecting android phones via MTP in kde/dolphin.

Original Bug description: https://bugs.kde.org/show_bug.cgi?id=387454
---
 pkgs/development/libraries/libmtp/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/libmtp/default.nix b/pkgs/development/libraries/libmtp/default.nix
index 1d8dd7e20f14..e750c2c6c70e 100644
--- a/pkgs/development/libraries/libmtp/default.nix
+++ b/pkgs/development/libraries/libmtp/default.nix
@@ -1,11 +1,11 @@
 { stdenv, fetchurl, pkgconfig, libusb1, libiconv }:
 
 stdenv.mkDerivation rec {
-  name = "libmtp-1.1.15";
+  name = "libmtp-1.1.16";
 
   src = fetchurl {
     url = "mirror://sourceforge/libmtp/${name}.tar.gz";
-    sha256 = "089h79nkz7wcr3lbqi7025l8p75hbp0aigxk3wdk2zkm8q5r0h6h";
+    sha256 = "185vh9bds6dcy00ycggg69g4v7m3api40zv8vrcfb3fk3vfzjs2v";
   };
 
   outputs = [ "bin" "dev" "out" ];

From d59a9ac7cf5e17f42aa1d971028f108864f2d252 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 12 Oct 2018 15:09:59 -0500
Subject: [PATCH 0087/1129] avr: use new compilation infrastructure

Gets rid of:
  avrbinutils
  avrgcc

to replace with:
  pkgsCross.avr.buildPackages.binutils
  pkgsCross.avr.buildPackages.gcc
---
 lib/systems/examples.nix                      |  4 ++
 lib/systems/inspect.nix                       |  1 +
 lib/systems/parse.nix                         |  5 ++
 .../bintools-wrapper/default.nix              |  1 +
 .../development/misc/avr/binutils/default.nix | 22 -------
 .../misc/avr/gcc/avrbinutils-path.patch       | 15 -----
 pkgs/development/misc/avr/gcc/default.nix     | 60 -------------------
 pkgs/development/misc/avr/libc/default.nix    | 17 +-----
 pkgs/top-level/all-packages.nix               | 12 ++--
 9 files changed, 19 insertions(+), 118 deletions(-)
 delete mode 100644 pkgs/development/misc/avr/binutils/default.nix
 delete mode 100644 pkgs/development/misc/avr/gcc/avrbinutils-path.patch
 delete mode 100644 pkgs/development/misc/avr/gcc/default.nix

diff --git a/lib/systems/examples.nix b/lib/systems/examples.nix
index 8ba03a63fd8d..e19143543902 100644
--- a/lib/systems/examples.nix
+++ b/lib/systems/examples.nix
@@ -99,6 +99,10 @@ rec {
   riscv64 = riscv "64";
   riscv32 = riscv "32";
 
+  arduino-uno = {
+    config = "avr";
+    platform = { name = "avr5"; };
+  };
 
   #
   # Darwin
diff --git a/lib/systems/inspect.nix b/lib/systems/inspect.nix
index 65f560328af5..2fcf1afe4628 100644
--- a/lib/systems/inspect.nix
+++ b/lib/systems/inspect.nix
@@ -19,6 +19,7 @@ rec {
     isRiscV        = { cpu = { family = "riscv"; }; };
     isSparc        = { cpu = { family = "sparc"; }; };
     isWasm         = { cpu = { family = "wasm"; }; };
+    isAvr          = { cpu = { family = "avr"; }; };
 
     is32bit        = { cpu = { bits = 32; }; };
     is64bit        = { cpu = { bits = 64; }; };
diff --git a/lib/systems/parse.nix b/lib/systems/parse.nix
index bb26c93f3d7a..058d4bed9085 100644
--- a/lib/systems/parse.nix
+++ b/lib/systems/parse.nix
@@ -101,6 +101,8 @@ rec {
 
     wasm32   = { bits = 32; significantByte = littleEndian; family = "wasm"; };
     wasm64   = { bits = 64; significantByte = littleEndian; family = "wasm"; };
+
+    avr      = { bits = 8; family = "avr"; };
   };
 
   ################################################################################
@@ -255,6 +257,9 @@ rec {
     setType "system" components;
 
   mkSkeletonFromList = l: {
+    "1" = if elemAt l 0 == "avr"
+      then { cpu = elemAt l 0; kernel = "none"; abi = "unknown"; }
+      else throw "Target specification with 1 components is ambiguous";
     "2" = # We only do 2-part hacks for things Nix already supports
       if elemAt l 1 == "cygwin"
         then { cpu = elemAt l 0;                      kernel = "windows";  abi = "cygnus";   }
diff --git a/pkgs/build-support/bintools-wrapper/default.nix b/pkgs/build-support/bintools-wrapper/default.nix
index f9ca245beea6..99f556b973a1 100644
--- a/pkgs/build-support/bintools-wrapper/default.nix
+++ b/pkgs/build-support/bintools-wrapper/default.nix
@@ -186,6 +186,7 @@ stdenv.mkDerivation {
         }.${targetPlatform.parsed.cpu.name}
       else if targetPlatform.isPower then if targetPlatform.isBigEndian then "ppc" else "lppc"
       else if targetPlatform.isSparc then "sparc"
+      else if targetPlatform.isAvr then "avr"
       else throw "unknown emulation for platform: " + targetPlatform.config;
     in targetPlatform.platform.bfdEmulation or (fmt + sep + arch);
 
diff --git a/pkgs/development/misc/avr/binutils/default.nix b/pkgs/development/misc/avr/binutils/default.nix
deleted file mode 100644
index 83ba93e63b76..000000000000
--- a/pkgs/development/misc/avr/binutils/default.nix
+++ /dev/null
@@ -1,22 +0,0 @@
-{ stdenv, fetchurl }:
-
-let
-  version = "2.31.1";
-in
-stdenv.mkDerivation {
-  name = "avr-binutils-${version}";
-
-  src = fetchurl {
-    url = "mirror://gnu/binutils/binutils-${version}.tar.bz2";
-    sha256 = "1l34hn1zkmhr1wcrgf0d4z7r3najxnw3cx2y2fk7v55zjlk3ik7z";
-  };
-  configureFlags = [ "--target=avr" "--enable-languages=c,c++" ];
-
-  meta = with stdenv.lib; {
-    description = "the GNU Binutils for AVR microcontrollers";
-    homepage = http://www.gnu.org/software/binutils/;
-    license = licenses.gpl3Plus;
-    platforms = platforms.unix;
-    maintainers = with maintainers; [ mguentner ];
-  };
-}
diff --git a/pkgs/development/misc/avr/gcc/avrbinutils-path.patch b/pkgs/development/misc/avr/gcc/avrbinutils-path.patch
deleted file mode 100644
index f0ec21b7589f..000000000000
--- a/pkgs/development/misc/avr/gcc/avrbinutils-path.patch
+++ /dev/null
@@ -1,15 +0,0 @@
-diff --git a/gcc/gcc-ar.c b/gcc/gcc-ar.c
-index 838ebc2..3ac4ee7 100644
---- a/gcc/gcc-ar.c
-+++ b/gcc/gcc-ar.c
-@@ -118,8 +118,8 @@ setup_prefixes (const char *exec_path)
- 				dir_separator, NULL);
-   prefix_from_string (self_libexec_prefix, &target_path);
- 
--  /* Add path as a last resort.  */
--  prefix_from_env ("PATH", &path);
-+  /* Add path to avrbinutils.  */
-+  prefix_from_string ("@avrbinutils@/bin", &path);
- }
- 
- int 
diff --git a/pkgs/development/misc/avr/gcc/default.nix b/pkgs/development/misc/avr/gcc/default.nix
deleted file mode 100644
index 5c9b56c99183..000000000000
--- a/pkgs/development/misc/avr/gcc/default.nix
+++ /dev/null
@@ -1,60 +0,0 @@
-{ stdenv, fetchurl, gmp, mpfr, libmpc, zlib, avrbinutils, texinfo }:
-
-let
-  version = "8.2.0";
-in
-stdenv.mkDerivation {
-
-  name = "avr-gcc-${version}";
-  src = fetchurl {
-    url = "mirror://gcc/releases/gcc-${version}/gcc-${version}.tar.xz";
-    sha256 = "10007smilswiiv2ymazr3b6x2i933c0ycxrr529zh4r6p823qv0r";
-  };
-
-  patches = [
-    ./avrbinutils-path.patch
-  ];
-
-  # avrbinutils-path.patch introduces a reference to @avrbinutils@, substitute
-  # it now.
-  postPatch = ''
-    substituteInPlace gcc/gcc-ar.c --subst-var-by avrbinutils ${avrbinutils}
-  '';
-
-  buildInputs = [ gmp mpfr libmpc zlib avrbinutils ];
-
-  nativeBuildInputs = [ texinfo ];
-
-  hardeningDisable = [ "format" ];
-
-  stripDebugList= [ "bin" "libexec" ];
-
-  enableParallelBuilding = true;
-
-  configurePhase = ''
-    mkdir gcc-build
-    cd gcc-build
-    ../configure   \
-    --prefix=$out  \
-    --host=$CHOST  \
-    --build=$CHOST \
-    --target=avr   \
-    --with-as=${avrbinutils}/bin/avr-as \
-    --with-gnu-as  \
-    --with-gnu-ld  \
-    --with-ld=${avrbinutils}/bin/avr-ld \
-    --with-system-zlib \
-    --disable-install-libiberty \
-    --disable-nls \
-    --disable-libssp \
-    --with-dwarf2 \
-    --enable-languages=c,c++'';
-
-  meta = with stdenv.lib; {
-    description = "GNU Compiler Collection, version ${version} for AVR microcontrollers";
-    homepage = http://gcc.gnu.org;
-    license = licenses.gpl3Plus;
-    platforms = with platforms; linux ++ darwin;
-    maintainers = with maintainers; [ mguentner ];
-  };
-}
diff --git a/pkgs/development/misc/avr/libc/default.nix b/pkgs/development/misc/avr/libc/default.nix
index 039846d5fcfb..9bfffe7b2fee 100644
--- a/pkgs/development/misc/avr/libc/default.nix
+++ b/pkgs/development/misc/avr/libc/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, avrgcc, avrbinutils, automake, autoconf }:
+{ stdenv, fetchurl, automake, autoconf }:
 
 let
   version = "2.0.0";
@@ -11,18 +11,7 @@ stdenv.mkDerivation {
     sha256 = "15svr2fx8j6prql2il2fc0ppwlv50rpmyckaxx38d3gxxv97zpdj";
   };
 
-  buildInputs = [ avrgcc avrbinutils automake autoconf ];
-  configurePhase = ''
-    unset LD
-    unset AS
-    unset AR
-    unset CC
-    unset CXX
-    unset RANLIB
-    unset STRIP
-
-    ./configure --prefix=$out --build=$(./config.guess) --host=avr
-  '';
+  nativeBuildInputs = [ automake autoconf ];
 
   # Make sure we don't strip the libraries in lib/gcc/avr.
   stripDebugList= "bin";
@@ -32,7 +21,7 @@ stdenv.mkDerivation {
     description = "a C runtime library for AVR microcontrollers";
     homepage = http://savannah.nongnu.org/projects/avr-libc/;
     license = licenses.bsd3;
-    platforms = platforms.unix;
+    platforms = platforms.all;
     maintainers = with maintainers; [ mguentner ];
   };
 }
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 3ace934df957..c6e2205a0bb9 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -7991,13 +7991,10 @@ with pkgs;
 
   amtk = callPackage ../development/libraries/amtk { };
 
-  avrgcclibc = throw "avrgcclibs are now separate packages, install avrbinutils, avrgcc and avrlibc";
-
-  avrbinutils = callPackage ../development/misc/avr/binutils {};
-
-  avrgcc      = callPackage ../development/misc/avr/gcc {};
-
-  avrlibc     = callPackage ../development/misc/avr/libc {};
+  avrlibc      = callPackage ../development/misc/avr/libc {};
+  avrlibcCross = callPackage ../development/misc/avr/libc {
+    stdenv = crossLibcStdenv;
+  };
 
   avr8burnomat = callPackage ../development/misc/avr8-burn-omat { };
 
@@ -9746,6 +9743,7 @@ with pkgs;
     /**/ if name == "glibc" then targetPackages.glibcCross or glibcCross
     else if name == "bionic" then targetPackages.bionic
     else if name == "uclibc" then targetPackages.uclibcCross
+    else if name == "avrlibc" then targetPackages.avrlibcCross
     else if name == "musl" then targetPackages.muslCross or muslCross
     else if name == "msvcrt" then targetPackages.windows.mingw_w64 or windows.mingw_w64
     else if stdenv.targetPlatform.useiOSPrebuilt then targetPackages.darwin.iosSdkPkgs.libraries

From 72e3b2a6629dbe12f184ed0156d9c34af271e158 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Sun, 14 Oct 2018 20:41:33 -0500
Subject: [PATCH 0088/1129] systems: add avrlibc for avr systems

---
 lib/systems/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/lib/systems/default.nix b/lib/systems/default.nix
index 8f5ef44ae72f..0b3475fefb9c 100644
--- a/lib/systems/default.nix
+++ b/lib/systems/default.nix
@@ -32,6 +32,7 @@ rec {
         else if final.isUClibc              then "uclibc"
         else if final.isAndroid             then "bionic"
         else if final.isLinux /* default */ then "glibc"
+        else if final.isAvr                 then "avrlibc"
         # TODO(@Ericson2314) think more about other operating systems
         else                                     "native/impure";
       extensions = {

From 412093994b9a4fe0fa7da99d1947effc85d9070b Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Mon, 15 Oct 2018 16:11:20 -0500
Subject: [PATCH 0089/1129] gcc: support avr
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

- respect libc’s incdir and libdir
- make non-unix systems single threaded
- set LIMITS_H_TEST to false for avr
- misc updates to support new libc’s
- use multilib with avr

For threads we want to use:
- posix on unix systems
- win32 on windows
- single on everything else

For avr:
- add library directories for avrlibc
- to disable relro and bind
- avr5 should have precedence over avr3 - otherwise gcc uses the wrong one
---
 lib/systems/examples.nix                      | 18 +++++++-
 .../bintools-wrapper/default.nix              | 12 +++++-
 pkgs/build-support/cc-wrapper/default.nix     | 16 +++++++-
 .../development/compilers/gcc/4.8/default.nix | 29 +++++++------
 .../development/compilers/gcc/4.9/default.nix | 29 +++++++------
 pkgs/development/compilers/gcc/5/default.nix  | 29 +++++++------
 pkgs/development/compilers/gcc/6/default.nix  | 29 +++++++------
 pkgs/development/compilers/gcc/7/default.nix  | 41 ++++++++++++-------
 pkgs/development/compilers/gcc/8/default.nix  | 32 +++++++--------
 .../compilers/gcc/snapshot/default.nix        | 25 ++++++-----
 pkgs/development/misc/avr/libc/default.nix    |  6 ++-
 11 files changed, 171 insertions(+), 95 deletions(-)

diff --git a/lib/systems/examples.nix b/lib/systems/examples.nix
index e19143543902..2bfa9700ccd1 100644
--- a/lib/systems/examples.nix
+++ b/lib/systems/examples.nix
@@ -99,9 +99,23 @@ rec {
   riscv64 = riscv "64";
   riscv32 = riscv "32";
 
-  arduino-uno = {
+  avr = {
     config = "avr";
-    platform = { name = "avr5"; };
+  };
+
+  arm-embedded = {
+    config = "arm-none-eabi";
+    libc = "newlib";
+  };
+
+  aarch64-embedded = {
+    config = "aarch64-none-elf";
+    libc = "newlib";
+  };
+
+  ppc-embedded = {
+    config = "powerpc-none-eabi";
+    libc = "newlib";
   };
 
   #
diff --git a/pkgs/build-support/bintools-wrapper/default.nix b/pkgs/build-support/bintools-wrapper/default.nix
index 99f556b973a1..3ac1e52f3092 100644
--- a/pkgs/build-support/bintools-wrapper/default.nix
+++ b/pkgs/build-support/bintools-wrapper/default.nix
@@ -210,7 +210,7 @@ stdenv.mkDerivation {
       ## General libc support
       ##
 
-      echo "-L${libc_lib}/lib" > $out/nix-support/libc-ldflags
+      echo "-L${libc_lib}${libc.libdir or "/lib"}" > $out/nix-support/libc-ldflags
 
       echo "${libc_lib}" > $out/nix-support/orig-libc
       echo "${libc_dev}" > $out/nix-support/orig-libc-dev
@@ -293,6 +293,16 @@ stdenv.mkDerivation {
       hardening_unsupported_flags+=" pic"
     ''
 
+    + optionalString targetPlatform.isAvr ''
+      hardening_unsupported_flags+=" relro bindnow"
+    ''
+
+    + optionalString (libc != null && targetPlatform.isAvr) ''
+      for isa in avr5 avr3 avr4 avr6 avr25 avr31 avr35 avr51 avrxmega2 avrxmega4 avrxmega5 avrxmega6 avrxmega7 tiny-stack; do
+        echo "-L${getLib libc}/avr/lib/$isa" >> $out/nix-support/libc-cflags
+      done
+    ''
+
     + ''
       set +u
       substituteAll ${./add-flags.sh} $out/nix-support/add-flags.sh
diff --git a/pkgs/build-support/cc-wrapper/default.nix b/pkgs/build-support/cc-wrapper/default.nix
index e59758371a38..06aa9436bfc0 100644
--- a/pkgs/build-support/cc-wrapper/default.nix
+++ b/pkgs/build-support/cc-wrapper/default.nix
@@ -232,7 +232,7 @@ stdenv.mkDerivation {
       # compile, because it uses "#include_next <limits.h>" to find the
       # limits.h file in ../includes-fixed. To remedy the problem,
       # another -idirafter is necessary to add that directory again.
-      echo "-B${libc_lib}/lib/ -idirafter ${libc_dev}/include ${optionalString isGNU "-idirafter ${cc}/lib/gcc/*/*/include-fixed"}" > $out/nix-support/libc-cflags
+      echo "-B${libc_lib}${libc.libdir or "/lib/"} -idirafter ${libc_dev}${libc.incdir or "/include"} ${optionalString isGNU "-idirafter ${cc}/lib/gcc/*/*/include-fixed"}" > $out/nix-support/libc-cflags
 
       echo "${libc_lib}" > $out/nix-support/orig-libc
       echo "${libc_dev}" > $out/nix-support/orig-libc-dev
@@ -284,6 +284,20 @@ stdenv.mkDerivation {
       hardening_unsupported_flags+=" stackprotector"
     ''
 
+    + optionalString targetPlatform.isAvr ''
+      hardening_unsupported_flags+=" stackprotector pic"
+    ''
+
+    + optionalString (targetPlatform.libc == "newlib") ''
+      hardening_unsupported_flags+=" stackprotector fortify pie pic"
+    ''
+
+    + optionalString (libc != null && targetPlatform.isAvr) ''
+      for isa in avr5 avr3 avr4 avr6 avr25 avr31 avr35 avr51 avrxmega2 avrxmega4 avrxmega5 avrxmega6 avrxmega7 tiny-stack; do
+        echo "-B${getLib libc}/avr/lib/$isa" >> $out/nix-support/libc-cflags
+      done
+    ''
+
     + ''
       substituteAll ${./add-flags.sh} $out/nix-support/add-flags.sh
       substituteAll ${./add-hardening.sh} $out/nix-support/add-hardening.sh
diff --git a/pkgs/development/compilers/gcc/4.8/default.nix b/pkgs/development/compilers/gcc/4.8/default.nix
index d9376f597a70..e585f296e877 100644
--- a/pkgs/development/compilers/gcc/4.8/default.nix
+++ b/pkgs/development/compilers/gcc/4.8/default.nix
@@ -130,7 +130,7 @@ let version = "4.8.5";
         "--disable-libmpx" # requires libc
       ] else [
         (if crossDarwin then "--with-sysroot=${getLib libcCross}/share/sysroot"
-         else                "--with-headers=${getDev libcCross}/include")
+         else                "--with-headers=${getDev libcCross}${libcCross.incdir or "/include"}")
         "--enable-__cxa_atexit"
         "--enable-long-long"
       ] ++
@@ -148,10 +148,15 @@ let version = "4.8.5";
             # In uclibc cases, libgomp needs an additional '-ldl'
             # and as I don't know how to pass it, I disable libgomp.
             "--disable-libgomp"
-          ] ++ [
-          "--enable-threads=posix"
-          "--enable-nls"
-          "--disable-decimal-float" # No final libdecnumber (it may work only in 386)
+          ]
+          ++ optional (targetPlatform.libc == "newlib") "--with-newlib"
+          ++ optional (targetPlatform.libc == "avrlibc") "--with-avrlibc"
+          ++ [
+            "--enable-threads=${if targetPlatform.isUnix then "posix"
+                                else if targetPlatform.isWindows then "win32"
+                                else "single"}"
+            "--enable-nls"
+            "--disable-decimal-float" # No final libdecnumber (it may work only in 386)
         ]));
     stageNameAddon = if crossStageStatic then "-stage-static" else "-stage-final";
     crossNameAddon = if targetPlatform != hostPlatform then "${targetPlatform.config}${stageNameAddon}-" else "";
@@ -270,7 +275,7 @@ stdenv.mkDerivation ({
       }"
     ] ++
 
-    (if enableMultilib
+    (if (enableMultilib || targetPlatform.isAvr)
       then ["--enable-multilib" "--disable-libquadmath"]
       else ["--disable-multilib"]) ++
     optional (!enableShared) "--disable-shared" ++
@@ -360,20 +365,20 @@ stdenv.mkDerivation ({
   EXTRA_TARGET_FLAGS = optionals
     (targetPlatform != hostPlatform && libcCross != null)
     ([
-      "-idirafter ${libcCross.dev}/include"
+      "-idirafter ${getDev libcCross}${libcCross.incdir or "/include"}"
     ] ++ optionals (! crossStageStatic) [
-      "-B${libcCross.out}/lib"
+      "-B${libcCross.out}${libcCross.libdir or "/lib"}"
     ]);
 
   EXTRA_TARGET_LDFLAGS = optionals
     (targetPlatform != hostPlatform && libcCross != null)
     ([
-      "-Wl,-L${libcCross.out}/lib"
+      "-Wl,-L${libcCross.out}${libcCross.libdir or "/lib"}"
     ] ++ (if crossStageStatic then [
-        "-B${libcCross.out}/lib"
+        "-B${libcCross.out}${libcCross.libdir or "/lib"}"
       ] else [
-        "-Wl,-rpath,${libcCross.out}/lib"
-        "-Wl,-rpath-link,${libcCross.out}/lib"
+        "-Wl,-rpath,${libcCross.out}${libcCross.libdir or "/lib"}"
+        "-Wl,-rpath-link,${libcCross.out}${libcCross.libdir or "/lib"}"
     ]));
 
   passthru = {
diff --git a/pkgs/development/compilers/gcc/4.9/default.nix b/pkgs/development/compilers/gcc/4.9/default.nix
index c60f54f1560c..9dae061ecbb3 100644
--- a/pkgs/development/compilers/gcc/4.9/default.nix
+++ b/pkgs/development/compilers/gcc/4.9/default.nix
@@ -135,7 +135,7 @@ let version = "4.9.4";
         "--disable-libmpx" # requires libc
       ] else [
         (if crossDarwin then "--with-sysroot=${getLib libcCross}/share/sysroot"
-         else                "--with-headers=${getDev libcCross}/include")
+         else                "--with-headers=${getDev libcCross}${libcCross.incdir or "/include"}")
         "--enable-__cxa_atexit"
         "--enable-long-long"
       ] ++
@@ -156,10 +156,15 @@ let version = "4.9.4";
             # In uclibc cases, libgomp needs an additional '-ldl'
             # and as I don't know how to pass it, I disable libgomp.
             "--disable-libgomp"
-          ] ++ [
-          "--enable-threads=posix"
-          "--enable-nls"
-          "--disable-decimal-float" # No final libdecnumber (it may work only in 386)
+          ]
+          ++ optional (targetPlatform.libc == "newlib") "--with-newlib"
+          ++ optional (targetPlatform.libc == "avrlibc") "--with-avrlibc"
+          ++ [
+            "--enable-threads=${if targetPlatform.isUnix then "posix"
+                                else if targetPlatform.isWindows then "win32"
+                                else "single"}"
+            "--enable-nls"
+            "--disable-decimal-float" # No final libdecnumber (it may work only in 386)
         ]));
     stageNameAddon = if crossStageStatic then "-stage-static" else "-stage-final";
     crossNameAddon = if targetPlatform != hostPlatform then "${targetPlatform.config}${stageNameAddon}-" else "";
@@ -292,7 +297,7 @@ stdenv.mkDerivation ({
       }"
     ] ++
 
-    (if enableMultilib
+    (if (enableMultilib || targetPlatform.isAvr)
       then ["--enable-multilib" "--disable-libquadmath"]
       else ["--disable-multilib"]) ++
     optional (!enableShared) "--disable-shared" ++
@@ -381,20 +386,20 @@ stdenv.mkDerivation ({
   EXTRA_TARGET_FLAGS = optionals
     (targetPlatform != hostPlatform && libcCross != null)
     ([
-      "-idirafter ${getDev libcCross}/include"
+      "-idirafter ${getDev libcCross}${libcCross.incdir or "/include"}"
     ] ++ optionals (! crossStageStatic) [
-      "-B${libcCross.out}/lib"
+      "-B${libcCross.out}${libcCross.libdir or "/lib"}"
     ]);
 
   EXTRA_TARGET_LDFLAGS = optionals
     (targetPlatform != hostPlatform && libcCross != null)
     ([
-      "-Wl,-L${libcCross.out}/lib"
+      "-Wl,-L${libcCross.out}${libcCross.libdir or "/lib"}"
     ] ++ (if crossStageStatic then [
-        "-B${libcCross.out}/lib"
+        "-B${libcCross.out}${libcCross.libdir or "/lib"}"
       ] else [
-        "-Wl,-rpath,${libcCross.out}/lib"
-        "-Wl,-rpath-link,${libcCross.out}/lib"
+        "-Wl,-rpath,${libcCross.out}${libcCross.libdir or "/lib"}"
+        "-Wl,-rpath-link,${libcCross.out}${libcCross.libdir or "/lib"}"
     ]));
 
   passthru =
diff --git a/pkgs/development/compilers/gcc/5/default.nix b/pkgs/development/compilers/gcc/5/default.nix
index 47c849d2dcc8..fbc192752c72 100644
--- a/pkgs/development/compilers/gcc/5/default.nix
+++ b/pkgs/development/compilers/gcc/5/default.nix
@@ -122,7 +122,7 @@ let version = "5.5.0";
         "--disable-libmpx" # requires libc
       ] else [
         (if crossDarwin then "--with-sysroot=${getLib libcCross}/share/sysroot"
-         else                "--with-headers=${getDev libcCross}/include")
+         else                "--with-headers=${getDev libcCross}${libcCross.incdir or "/include"}")
         "--enable-__cxa_atexit"
         "--enable-long-long"
       ] ++
@@ -143,10 +143,15 @@ let version = "5.5.0";
             # In uclibc cases, libgomp needs an additional '-ldl'
             # and as I don't know how to pass it, I disable libgomp.
             "--disable-libgomp"
-          ] ++ [
-          "--enable-threads=posix"
-          "--enable-nls"
-          "--disable-decimal-float" # No final libdecnumber (it may work only in 386)
+          ]
+          ++ optional (targetPlatform.libc == "newlib") "--with-newlib"
+          ++ optional (targetPlatform.libc == "avrlibc") "--with-avrlibc"
+          ++ [
+            "--enable-threads=${if targetPlatform.isUnix then "posix"
+                                else if targetPlatform.isWindows then "win32"
+                                else "single"}"
+            "--enable-nls"
+            "--disable-decimal-float" # No final libdecnumber (it may work only in 386)
         ]));
     stageNameAddon = if crossStageStatic then "-stage-static" else "-stage-final";
     crossNameAddon = if targetPlatform != hostPlatform then "${targetPlatform.config}${stageNameAddon}-" else "";
@@ -296,7 +301,7 @@ stdenv.mkDerivation ({
       }"
     ] ++
 
-    (if enableMultilib
+    (if (enableMultilib || targetPlatform.isAvr)
       then ["--enable-multilib" "--disable-libquadmath"]
       else ["--disable-multilib"]) ++
     optional (!enableShared) "--disable-shared" ++
@@ -387,20 +392,20 @@ stdenv.mkDerivation ({
   EXTRA_TARGET_FLAGS = optionals
     (targetPlatform != hostPlatform && libcCross != null)
     ([
-      "-idirafter ${getDev libcCross}/include"
+      "-idirafter ${getDev libcCross}${libcCross.incdir or "/include"}"
     ] ++ optionals (! crossStageStatic) [
-      "-B${libcCross.out}/lib"
+      "-B${libcCross.out}${libcCross.libdir or "/lib"}"
     ]);
 
   EXTRA_TARGET_LDFLAGS = optionals
     (targetPlatform != hostPlatform && libcCross != null)
     ([
-      "-Wl,-L${libcCross.out}/lib"
+      "-Wl,-L${libcCross.out}${libcCross.libdir or "/lib"}"
     ] ++ (if crossStageStatic then [
-        "-B${libcCross.out}/lib"
+        "-B${libcCross.out}${libcCross.libdir or "/lib"}"
       ] else [
-        "-Wl,-rpath,${libcCross.out}/lib"
-        "-Wl,-rpath-link,${libcCross.out}/lib"
+        "-Wl,-rpath,${libcCross.out}${libcCross.libdir or "/lib"}"
+        "-Wl,-rpath-link,${libcCross.out}${libcCross.libdir or "/lib"}"
     ]));
 
   passthru =
diff --git a/pkgs/development/compilers/gcc/6/default.nix b/pkgs/development/compilers/gcc/6/default.nix
index eeb57be97157..793752dee19e 100644
--- a/pkgs/development/compilers/gcc/6/default.nix
+++ b/pkgs/development/compilers/gcc/6/default.nix
@@ -120,7 +120,7 @@ let version = "6.4.0";
         "--disable-libmpx" # requires libc
       ] else [
         (if crossDarwin then "--with-sysroot=${getLib libcCross}/share/sysroot"
-         else                "--with-headers=${getDev libcCross}/include")
+         else                "--with-headers=${getDev libcCross}${libcCross.incdir or "/include"}")
         "--enable-__cxa_atexit"
         "--enable-long-long"
       ] ++
@@ -143,10 +143,15 @@ let version = "6.4.0";
             "--disable-libgomp"
             # musl at least, disable: https://git.buildroot.net/buildroot/commit/?id=873d4019f7fb00f6a80592224236b3ba7d657865
             "--disable-libmpx"
-          ] ++ [
-          "--enable-threads=posix"
-          "--enable-nls"
-          "--disable-decimal-float" # No final libdecnumber (it may work only in 386)
+          ]
+          ++ optional (targetPlatform.libc == "newlib") "--with-newlib"
+          ++ optional (targetPlatform.libc == "avrlibc") "--with-avrlibc"
+          ++ [
+            "--enable-threads=${if targetPlatform.isUnix then "posix"
+                                else if targetPlatform.isWindows then "win32"
+                                else "single"}"
+            "--enable-nls"
+            "--disable-decimal-float" # No final libdecnumber (it may work only in 386)
         ]));
     stageNameAddon = if crossStageStatic then "-stage-static" else "-stage-final";
     crossNameAddon = if targetPlatform != hostPlatform then "${targetPlatform.config}${stageNameAddon}-" else "";
@@ -301,7 +306,7 @@ stdenv.mkDerivation ({
       }"
     ] ++
 
-    (if enableMultilib
+    (if (enableMultilib || targetPlatform.isAvr)
       then ["--enable-multilib" "--disable-libquadmath"]
       else ["--disable-multilib"]) ++
     optional (!enableShared) "--disable-shared" ++
@@ -391,20 +396,20 @@ stdenv.mkDerivation ({
   EXTRA_TARGET_FLAGS = optionals
     (targetPlatform != hostPlatform && libcCross != null)
     ([
-      "-idirafter ${getDev libcCross}/include"
+      "-idirafter ${getDev libcCross}${libcCross.incdir or "/include"}"
     ] ++ optionals (! crossStageStatic) [
-      "-B${libcCross.out}/lib"
+      "-B${libcCross.out}${libcCross.libdir or "/lib"}"
     ]);
 
   EXTRA_TARGET_LDFLAGS = optionals
     (targetPlatform != hostPlatform && libcCross != null)
     ([
-      "-Wl,-L${libcCross.out}/lib"
+      "-Wl,-L${libcCross.out}${libcCross.libdir or "/lib"}"
     ] ++ (if crossStageStatic then [
-        "-B${libcCross.out}/lib"
+        "-B${libcCross.out}${libcCross.libdir or "/lib"}"
       ] else [
-        "-Wl,-rpath,${libcCross.out}/lib"
-        "-Wl,-rpath-link,${libcCross.out}/lib"
+        "-Wl,-rpath,${libcCross.out}${libcCross.libdir or "/lib"}"
+        "-Wl,-rpath-link,${libcCross.out}${libcCross.libdir or "/lib"}"
     ]));
 
   passthru =
diff --git a/pkgs/development/compilers/gcc/7/default.nix b/pkgs/development/compilers/gcc/7/default.nix
index 59897ccff426..c75a6c6e68f8 100644
--- a/pkgs/development/compilers/gcc/7/default.nix
+++ b/pkgs/development/compilers/gcc/7/default.nix
@@ -67,7 +67,7 @@ let version = "7.3.0";
       [ "--with-as=${targetPackages.stdenv.cc.bintools}/bin/${targetPlatform.config}-as"
         "--with-ld=${targetPackages.stdenv.cc.bintools}/bin/${targetPlatform.config}-ld" ] ++
       (if crossMingw && crossStageStatic then [
-        "--with-headers=${libcCross}/include"
+        "--with-headers=${getDev libcCross}${libcCross.incdir or "/include"}"
         "--with-gcc"
         "--with-gnu-as"
         "--with-gnu-ld"
@@ -92,7 +92,7 @@ let version = "7.3.0";
         "--disable-libmpx" # requires libc
       ] else [
         (if crossDarwin then "--with-sysroot=${getLib libcCross}/share/sysroot"
-         else                "--with-headers=${getDev libcCross}/include")
+         else                "--with-headers=${getDev libcCross}${libcCross.incdir or "/include"}")
         "--enable-__cxa_atexit"
         "--enable-long-long"
       ] ++
@@ -115,11 +115,17 @@ let version = "7.3.0";
             "--disable-libgomp"
             # musl at least, disable: https://git.buildroot.net/buildroot/commit/?id=873d4019f7fb00f6a80592224236b3ba7d657865
             "--disable-libmpx"
-          ] ++ [
-          "--enable-threads=posix"
-          "--enable-nls"
-          "--disable-decimal-float" # No final libdecnumber (it may work only in 386)
-        ]));
+          ]
+          ++ optional (targetPlatform.libc == "newlib") "--with-newlib"
+          ++ optional (targetPlatform.libc == "avrlibc") "--with-avrlibc"
+          ++ [
+            "--enable-threads=${if targetPlatform.isUnix then "posix"
+                                else if targetPlatform.isWindows then "win32"
+                                else "single"}"
+            "--enable-nls"
+            # No final libdecnumber (it may work only in 386)
+            "--disable-decimal-float"
+          ]));
     stageNameAddon = if crossStageStatic then "-stage-static" else "-stage-final";
     crossNameAddon = if targetPlatform != hostPlatform then "${targetPlatform.config}${stageNameAddon}-" else "";
 
@@ -188,7 +194,12 @@ stdenv.mkDerivation ({
             sed -i gcc/config/linux.h -e '1i#undef LOCAL_INCLUDE_DIR'
         ''
         )
-    else "");
+    else "")
+      + stdenv.lib.optionalString targetPlatform.isAvr ''
+        makeFlagsArray+=(
+           'LIMITS_H_TEST=false'
+        )
+      '';
 
   inherit noSysDirs staticCompiler crossStageStatic
     libcCross crossMingw;
@@ -267,7 +278,7 @@ stdenv.mkDerivation ({
       }"
     ] ++
 
-    (if enableMultilib
+    (if (enableMultilib || targetPlatform.isAvr)
       then ["--enable-multilib" "--disable-libquadmath"]
       else ["--disable-multilib"]) ++
     optional (!enableShared) "--disable-shared" ++
@@ -334,20 +345,20 @@ stdenv.mkDerivation ({
   EXTRA_TARGET_FLAGS = optionals
     (targetPlatform != hostPlatform && libcCross != null)
     ([
-      "-idirafter ${getDev libcCross}/include"
+      "-idirafter ${getDev libcCross}${libcCross.incdir or "/include"}"
     ] ++ optionals (! crossStageStatic) [
-      "-B${libcCross.out}/lib"
+      "-B${libcCross.out}${libcCross.libdir or "/lib"}"
     ]);
 
   EXTRA_TARGET_LDFLAGS = optionals
     (targetPlatform != hostPlatform && libcCross != null)
     ([
-      "-Wl,-L${libcCross.out}/lib"
+      "-Wl,-L${libcCross.out}${libcCross.libdir or "/lib"}"
     ] ++ (if crossStageStatic then [
-        "-B${libcCross.out}/lib"
+        "-B${libcCross.out}${libcCross.libdir or "/lib"}"
       ] else [
-        "-Wl,-rpath,${libcCross.out}/lib"
-        "-Wl,-rpath-link,${libcCross.out}/lib"
+        "-Wl,-rpath,${libcCross.out}${libcCross.libdir or "/lib"}"
+        "-Wl,-rpath-link,${libcCross.out}${libcCross.libdir or "/lib"}"
     ]));
 
   passthru =
diff --git a/pkgs/development/compilers/gcc/8/default.nix b/pkgs/development/compilers/gcc/8/default.nix
index 7842110a2146..bcac577712aa 100644
--- a/pkgs/development/compilers/gcc/8/default.nix
+++ b/pkgs/development/compilers/gcc/8/default.nix
@@ -87,7 +87,7 @@ let version = "8.2.0";
         "--disable-libmpx" # requires libc
       ] else [
         (if crossDarwin then "--with-sysroot=${getLib libcCross}/share/sysroot"
-         else                "--with-headers=${getDev libcCross}/include")
+         else                "--with-headers=${getDev libcCross}${libcCross.incdir or "/include"}")
         "--enable-__cxa_atexit"
         "--enable-long-long"
       ] ++
@@ -110,10 +110,15 @@ let version = "8.2.0";
             "--disable-libgomp"
             # musl at least, disable: https://git.buildroot.net/buildroot/commit/?id=873d4019f7fb00f6a80592224236b3ba7d657865
             "--disable-libmpx"
-          ] ++ [
-          "--enable-threads=posix"
-          "--enable-nls"
-          "--disable-decimal-float" # No final libdecnumber (it may work only in 386)
+          ]
+          ++ optional (targetPlatform.libc == "newlib") "--with-newlib"
+          ++ optional (targetPlatform.libc == "avrlibc") "--with-avrlibc"
+          ++ [
+            "--enable-threads=${if targetPlatform.isUnix then "posix"
+                                else if targetPlatform.isWindows then "win32"
+                                else "single"}"
+            "--enable-nls"
+            "--disable-decimal-float" # No final libdecnumber (it may work only in 386)
         ]));
     stageNameAddon = if crossStageStatic then "-stage-static" else "-stage-final";
     crossNameAddon = if targetPlatform != hostPlatform then "-${targetPlatform.config}" + stageNameAddon else "";
@@ -261,7 +266,7 @@ stdenv.mkDerivation ({
       }"
     ] ++
 
-    (if enableMultilib
+    (if (enableMultilib || targetPlatform.isAvr)
       then ["--enable-multilib" "--disable-libquadmath"]
       else ["--disable-multilib"]) ++
     optional (!enableShared) "--disable-shared" ++
@@ -322,23 +327,16 @@ stdenv.mkDerivation ({
 
   LIBRARY_PATH = optionals (targetPlatform == hostPlatform) (makeLibraryPath (optional (zlib != null) zlib));
 
-  EXTRA_TARGET_FLAGS = optionals
-    (targetPlatform != hostPlatform && libcCross != null)
-    ([
-      "-idirafter ${getDev libcCross}/include"
-    ] ++ optionals (! crossStageStatic) [
-      "-B${libcCross.out}/lib"
-    ]);
 
   EXTRA_TARGET_LDFLAGS = optionals
     (targetPlatform != hostPlatform && libcCross != null)
     ([
-      "-Wl,-L${libcCross.out}/lib"
+      "-Wl,-L${libcCross.out}${libcCross.libdir or "/lib"}"
     ] ++ (if crossStageStatic then [
-        "-B${libcCross.out}/lib"
+        "-B${libcCross.out}${libcCross.libdir or "/lib"}"
       ] else [
-        "-Wl,-rpath,${libcCross.out}/lib"
-        "-Wl,-rpath-link,${libcCross.out}/lib"
+        "-Wl,-rpath,${libcCross.out}${libcCross.libdir or "/lib"}"
+        "-Wl,-rpath-link,${libcCross.out}${libcCross.libdir or "/lib"}"
     ]));
 
   passthru =
diff --git a/pkgs/development/compilers/gcc/snapshot/default.nix b/pkgs/development/compilers/gcc/snapshot/default.nix
index 0de6be36c351..a308abd9c16f 100644
--- a/pkgs/development/compilers/gcc/snapshot/default.nix
+++ b/pkgs/development/compilers/gcc/snapshot/default.nix
@@ -104,10 +104,15 @@ let version = "7-20170409";
             # In uclibc cases, libgomp needs an additional '-ldl'
             # and as I don't know how to pass it, I disable libgomp.
             "--disable-libgomp"
-          ] ++ [
-          "--enable-threads=posix"
-          "--enable-nls"
-          "--disable-decimal-float" # No final libdecnumber (it may work only in 386)
+          ]
+          ++ optional (targetPlatform.libc == "newlib") "--with-newlib"
+          ++ optional (targetPlatform.libc == "avrlibc") "--with-avrlibc"
+          ++ [
+            "--enable-threads=${if targetPlatform.isUnix then "posix"
+                                else if targetPlatform.isWindows then "win32"
+                                else "single"}"
+            "--enable-nls"
+            "--disable-decimal-float" # No final libdecnumber (it may work only in 386)
         ]));
     stageNameAddon = if crossStageStatic then "-stage-static" else "-stage-final";
     crossNameAddon = if targetPlatform != hostPlatform then "-${targetPlatform.config}" + stageNameAddon else "";
@@ -290,20 +295,20 @@ stdenv.mkDerivation ({
   EXTRA_TARGET_FLAGS = optionals
     (targetPlatform != hostPlatform && libcCross != null)
     ([
-      "-idirafter ${getDev libcCross}/include"
+      "-idirafter ${getDev libcCross}${libcCross.incdir or "/include"}"
     ] ++ optionals (! crossStageStatic) [
-      "-B${libcCross.out}/lib"
+      "-B${libcCross.out}${libcCross.libdir or "/lib"}"
     ]);
 
   EXTRA_TARGET_LDFLAGS = optionals
     (targetPlatform != hostPlatform && libcCross != null)
     ([
-      "-Wl,-L${libcCross.out}/lib"
+      "-Wl,-L${libcCross.out}${libcCross.libdir or "/lib"}"
     ] ++ (if crossStageStatic then [
-        "-B${libcCross.out}/lib"
+        "-B${libcCross.out}${libcCross.libdir or "/lib"}"
       ] else [
-        "-Wl,-rpath,${libcCross.out}/lib"
-        "-Wl,-rpath-link,${libcCross.out}/lib"
+        "-Wl,-rpath,${libcCross.out}${libcCross.libdir or "/lib"}"
+        "-Wl,-rpath-link,${libcCross.out}${libcCross.libdir or "/lib"}"
     ]));
 
   passthru =
diff --git a/pkgs/development/misc/avr/libc/default.nix b/pkgs/development/misc/avr/libc/default.nix
index 9bfffe7b2fee..afe30e4b5eef 100644
--- a/pkgs/development/misc/avr/libc/default.nix
+++ b/pkgs/development/misc/avr/libc/default.nix
@@ -14,9 +14,13 @@ stdenv.mkDerivation {
   nativeBuildInputs = [ automake autoconf ];
 
   # Make sure we don't strip the libraries in lib/gcc/avr.
-  stripDebugList= "bin";
+  stripDebugList = "bin";
   dontPatchELF = true;
 
+  passthru = {
+    incdir = "/avr/include";
+  };
+
   meta = with stdenv.lib; {
     description = "a C runtime library for AVR microcontrollers";
     homepage = http://savannah.nongnu.org/projects/avr-libc/;

From 2650a1f91ed08049cc6a70051ef238d0fb3dc9e5 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Wed, 17 Oct 2018 12:55:06 -0500
Subject: [PATCH 0090/1129] dfu-programmer: supports macos

---
 pkgs/development/tools/misc/dfu-programmer/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/tools/misc/dfu-programmer/default.nix b/pkgs/development/tools/misc/dfu-programmer/default.nix
index 1c0f80e1ddd7..ba95889b5a80 100644
--- a/pkgs/development/tools/misc/dfu-programmer/default.nix
+++ b/pkgs/development/tools/misc/dfu-programmer/default.nix
@@ -19,6 +19,6 @@ stdenv.mkDerivation rec {
     description = "A Device Firmware Update based USB programmer for Atmel chips with a USB bootloader";
     homepage = http://dfu-programmer.sourceforge.net/;
     maintainers = [ maintainers.the-kenny ];
-    platforms = platforms.linux;
+    platforms = platforms.unix;
   };
 }

From 8db71d9d773956d41778b88d88ead126a0138e67 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 19 Oct 2018 11:43:33 -0500
Subject: [PATCH 0091/1129] newlib: init at 3.0.0
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Fixes #47533

newlib seems to think it’s a compiler when it’s not. Anyway had to
make host refer to build platform for things to work.
---
 pkgs/development/misc/newlib/default.nix | 34 ++++++++++++++++++++++++
 pkgs/top-level/all-packages.nix          |  8 +++++-
 2 files changed, 41 insertions(+), 1 deletion(-)
 create mode 100644 pkgs/development/misc/newlib/default.nix

diff --git a/pkgs/development/misc/newlib/default.nix b/pkgs/development/misc/newlib/default.nix
new file mode 100644
index 000000000000..e26f0f78f210
--- /dev/null
+++ b/pkgs/development/misc/newlib/default.nix
@@ -0,0 +1,34 @@
+{ stdenv, fetchurl, buildPackages }:
+
+let version = "3.0.0";
+in stdenv.mkDerivation {
+  name = "newlib-${version}";
+  src = fetchurl {
+    url = "ftp://sourceware.org/pub/newlib/newlib-${version}.tar.gz";
+    sha256 = "0chka3szh50krcz2dcxcsr1v1i000jylwnsrp2pgrrblxqsn6mn8";
+  };
+
+  depsBuildBuild = [ buildPackages.stdenv.cc ];
+
+  # newlib expects CC to build for build platform, not host platform
+  preConfigure = ''
+    export CC=cc
+  '';
+
+  configurePlatforms = [ "build" "target" ];
+  configureFlags = [
+    "--host=${stdenv.buildPlatform.config}"
+
+    "--disable-newlib-supplied-syscalls"
+    "--disable-nls"
+    "--enable-newlib-io-long-long"
+    "--enable-newlib-register-fini"
+  ];
+
+  dontDisableStatic = true;
+
+  passthru = {
+    incdir = "/${stdenv.hostPlatform.config}/include";
+    libdir = "/${stdenv.hostPlatform.config}/lib";
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index c6e2205a0bb9..d4749c1f49ba 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -9743,7 +9743,8 @@ with pkgs;
     /**/ if name == "glibc" then targetPackages.glibcCross or glibcCross
     else if name == "bionic" then targetPackages.bionic
     else if name == "uclibc" then targetPackages.uclibcCross
-    else if name == "avrlibc" then targetPackages.avrlibcCross
+    else if name == "avrlibc" then targetPackages.avrlibcCross or avrlibcCross
+    else if name == "newlib" then targetPackages.newlibCross or newlibCross
     else if name == "musl" then targetPackages.muslCross or muslCross
     else if name == "msvcrt" then targetPackages.windows.mingw_w64 or windows.mingw_w64
     else if stdenv.targetPlatform.useiOSPrebuilt then targetPackages.darwin.iosSdkPkgs.libraries
@@ -22836,4 +22837,9 @@ with pkgs;
   };
 
   tsung = callPackage ../applications/networking/tsung {};
+
+  newlib = callPackage ../development/misc/newlib { };
+  newlibCross = callPackage ../development/misc/newlib {
+    stdenv = crossLibcStdenv;
+  };
 }

From 52dbd3380e0e9328d69c4abaae2d28b3e7e76bce Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 19 Oct 2018 11:47:43 -0500
Subject: [PATCH 0092/1129] systems/parse.nix: support weird system configs
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

There are some weird ones out there that don’t follow any pattern:

- arm-none-eabi
- powerpc-none-eabi
- aarch64-none-elf
---
 lib/systems/parse.nix | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/lib/systems/parse.nix b/lib/systems/parse.nix
index 058d4bed9085..a390a098c60f 100644
--- a/lib/systems/parse.nix
+++ b/lib/systems/parse.nix
@@ -119,6 +119,7 @@ rec {
     apple = {};
     pc = {};
 
+    none = {};
     unknown = {};
   };
 
@@ -202,6 +203,7 @@ rec {
     cygnus       = {};
     msvc         = {};
     eabi         = {};
+    elf         = {};
 
     androideabi  = {};
     android      = {
@@ -263,6 +265,8 @@ rec {
     "2" = # We only do 2-part hacks for things Nix already supports
       if elemAt l 1 == "cygwin"
         then { cpu = elemAt l 0;                      kernel = "windows";  abi = "cygnus";   }
+      else if (elemAt l 1 == "eabi")
+        then { cpu = elemAt l 0; vendor = "none"; kernel = "none"; abi = elemAt l 1; }
       else   { cpu = elemAt l 0;                      kernel = elemAt l 1;                   };
     "3" = # Awkwards hacks, beware!
       if elemAt l 1 == "apple"
@@ -273,6 +277,10 @@ rec {
         then { cpu = elemAt l 0; vendor = elemAt l 1; kernel = "windows";  abi = "gnu"; }
       else if hasPrefix "netbsd" (elemAt l 2)
         then { cpu = elemAt l 0; vendor = elemAt l 1;    kernel = elemAt l 2;                }
+      else if (elemAt l 2 == "eabi")
+        then { cpu = elemAt l 0; vendor = elemAt l 1; kernel = "none"; abi = elemAt l 2; }
+      else if (elemAt l 2 == "elf")
+        then { cpu = elemAt l 0; vendor = elemAt l 1; kernel = "none"; abi = elemAt l 2; }
       else throw "Target specification with 3 components is ambiguous";
     "4" =    { cpu = elemAt l 0; vendor = elemAt l 1; kernel = elemAt l 2; abi = elemAt l 3; };
   }.${toString (length l)}

From 946598d071af5e3265a3fad72afe620944976835 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Tue, 16 Oct 2018 22:31:22 -0500
Subject: [PATCH 0093/1129] release-cross: add new targets

adds:

- arm-embedded
- avr
- aarch64-embedded
- powerpc-embedded
---
 pkgs/top-level/release-cross.nix | 11 +++++++++++
 1 file changed, 11 insertions(+)

diff --git a/pkgs/top-level/release-cross.nix b/pkgs/top-level/release-cross.nix
index 89a8af6794f6..3dec10ad0dbf 100644
--- a/pkgs/top-level/release-cross.nix
+++ b/pkgs/top-level/release-cross.nix
@@ -12,6 +12,12 @@ with import ./release-lib.nix { inherit supportedSystems scrubJobs; };
 let
   nativePlatforms = all;
 
+  embedded = {
+    buildPackages.binutils = nativePlatforms;
+    buildPackages.gcc = nativePlatforms;
+    libcCross = nativePlatforms;
+  };
+
   common = {
     buildPackages.binutils = nativePlatforms;
     gmp = nativePlatforms;
@@ -134,6 +140,11 @@ in
   android64 = mapTestOnCross lib.systems.examples.aarch64-android-prebuilt (linuxCommon // {
   });
 
+  avr = mapTestOnCross lib.systems.examples.avr embedded;
+  arm-embedded = mapTestOnCross lib.systems.examples.arm-embedded embedded;
+  powerpc-embedded = mapTestOnCross lib.systems.examples.powerpc-embedded embedded;
+  aarch64-embedded = mapTestOnCross lib.systems.examples.aarch64-embedded embedded;
+
   /* Cross-built bootstrap tools for every supported platform */
   bootstrapTools = let
     tools = import ../stdenv/linux/make-bootstrap-tools-cross.nix { system = "x86_64-linux"; };

From 501d072b5ff48d55b97027a38626cb252c4d026c Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 19 Oct 2018 12:22:29 -0500
Subject: [PATCH 0094/1129] gnuk{-git,-unstable}: remove

These two are unmaintained, no reason to keep them when they are
out-of-date
---
 pkgs/misc/gnuk/git.nix          | 11 -----------
 pkgs/misc/gnuk/unstable.nix     | 11 -----------
 pkgs/top-level/all-packages.nix |  6 ------
 3 files changed, 28 deletions(-)
 delete mode 100644 pkgs/misc/gnuk/git.nix
 delete mode 100644 pkgs/misc/gnuk/unstable.nix

diff --git a/pkgs/misc/gnuk/git.nix b/pkgs/misc/gnuk/git.nix
deleted file mode 100644
index 142c4a0e7e5f..000000000000
--- a/pkgs/misc/gnuk/git.nix
+++ /dev/null
@@ -1,11 +0,0 @@
-{ callPackage, fetchgit, ... } @ args:
-
-callPackage ./generic.nix (args // rec {
-  version = "2015-04-22";
-
-  src = fetchgit {
-    url = "git://git.gniibe.org/gnuk/gnuk.git";
-    rev = "3d5a776ab15a4ae6e17d91341a58eda3db09f700";
-    sha256 = "1f9l1rwy630z8cnjd6lfv0zp6ij3c9ifbm3fym245049hh2xds7v";
-  };
-})
diff --git a/pkgs/misc/gnuk/unstable.nix b/pkgs/misc/gnuk/unstable.nix
deleted file mode 100644
index 16dbe5d21fc8..000000000000
--- a/pkgs/misc/gnuk/unstable.nix
+++ /dev/null
@@ -1,11 +0,0 @@
-{ callPackage, fetchgit, ... } @ args:
-
-callPackage ./generic.nix (args // rec {
-  version = "1.1.4";
-
-  src = fetchgit {
-    url = "git://git.gniibe.org/gnuk/gnuk.git";
-    rev = "e7e8b9f5ca414a5c901f61b0f043c8da42414103";
-    sha256 = "0js9dc1iyvrrcb0d8a2irivrli3yb7mxmpxws5a2n53hj5xc4n6l";
-  };
-})
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index d4749c1f49ba..15f50090576d 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -21984,12 +21984,6 @@ with pkgs;
   gnuk = callPackage ../misc/gnuk {
     gcc-arm-embedded = gcc-arm-embedded-4_9;
   };
-  gnuk-unstable = lowPrio (callPackage ../misc/gnuk/unstable.nix {
-    gcc-arm-embedded = gcc-arm-embedded-4_9;
-  });
-  gnuk-git = lowPrio (callPackage ../misc/gnuk/git.nix {
-    gcc-arm-embedded = gcc-arm-embedded-4_9;
-  });
 
   greybird = callPackage ../misc/themes/greybird { };
 

From 20643a78073ecd95e960317c6b7488ba0febbf06 Mon Sep 17 00:00:00 2001
From: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
Date: Mon, 29 Oct 2018 16:10:24 -0400
Subject: [PATCH 0095/1129] texlive: provide repstopdf

repstopdf is supposed to be a symlink to epstopdf. Then epstopdf looks
at "$0" to detect when restricted mode needs to be enabled.  Unfortunately
our wrapper will drop all intermediate symlinks, which messes up "$0".
Restricted mode appears to be a security feature, so a test is
introduced to verify that the wrapper works as expected.
---
 .../tools/typesetting/tex/texlive/combine.nix | 21 +++++++++++++++++++
 1 file changed, 21 insertions(+)

diff --git a/pkgs/tools/typesetting/tex/texlive/combine.nix b/pkgs/tools/typesetting/tex/texlive/combine.nix
index f76b71ced3cf..ea2926748198 100644
--- a/pkgs/tools/typesetting/tex/texlive/combine.nix
+++ b/pkgs/tools/typesetting/tex/texlive/combine.nix
@@ -218,8 +218,29 @@ in buildEnv {
         ln -sv "$(realpath $s)" "$out/bin/$tName" # wrapped below
       done
     )
+  '' +
+    # A hacky way to provide repstopdf
+    #  * Copy is done to have a correct "$0" so that epstopdf enables the restricted mode
+    #  * ./bin/repstopdf needs to be a symlink to be processed by wrapBin
+  ''
+    if [[ -e ./bin/epstopdf ]]; then
+      cp $(realpath ./bin/epstopdf) ./share/texmf/scripts/repstopdf
+      ln -s "$out"/share/texmf/scripts/repstopdf ./bin/repstopdf
+    fi
+  '' +
+    # finish up the wrappers
+  ''
     rm "$out"/bin/*-sys
     wrapBin
+  '' +
+    # Perform a small test to verify that the restricted mode get enabled when
+    # needed (detected by checking if it disallows --gscmd)
+  ''
+    if [[ -e ./bin/epstopdf ]]; then
+      echo "Testing restricted mode for {,r}epstopdf"
+      ! (epstopdf --gscmd echo /dev/null 2>&1 || true) | grep forbidden
+      (repstopdf --gscmd echo /dev/null 2>&1 || true) | grep forbidden
+    fi
   '' +
   # TODO: a context trigger https://www.preining.info/blog/2015/06/debian-tex-live-2015-the-new-layout/
     # http://wiki.contextgarden.net/ConTeXt_Standalone#Unix-like_platforms_.28Linux.2FMacOS_X.2FFreeBSD.2FSolaris.29

From 2f9fc897eb305abee1206061a20f65c12243b0b4 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Th=C3=A9o=20Zimmermann?=
 <theo.zimmermann@univ-paris-diderot.fr>
Date: Tue, 30 Oct 2018 01:24:07 +0100
Subject: [PATCH 0096/1129] Add mention of nix-prefetch-github. (#49336)

---
 doc/coding-conventions.xml | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/doc/coding-conventions.xml b/doc/coding-conventions.xml
index b3f7f093835c..3e8a0ea4a703 100644
--- a/doc/coding-conventions.xml
+++ b/doc/coding-conventions.xml
@@ -842,9 +842,12 @@ src = fetchFromGitHub {
   owner = "NixOS";
   repo = "nix";
   rev = "1f795f9f44607cc5bec70d1300150bfefcef2aae";
-  sha256 = "04yri911rj9j19qqqn6m82266fl05pz98inasni0vxr1cf1gdgv9";
+  sha256 = "1i2yxndxb6yc9l6c99pypbd92lfq5aac4klq7y2v93c9qvx2cgpc";
 }
 </programlisting>
+      Find the value to put as <literal>sha256</literal> by running
+      <literal>nix run -f '&lt;nixpkgs&gt;' nix-prefetch-github -c nix-prefetch-github --rev 1f795f9f44607cc5bec70d1300150bfefcef2aae NixOS nix</literal>
+      or <literal>nix-prefetch-url --unpack https://github.com/NixOS/nix/archive/1f795f9f44607cc5bec70d1300150bfefcef2aae.tar.gz</literal>.
      </para>
     </listitem>
    </itemizedlist>

From 30d27920911c728a8aefc26e636588627d0d2841 Mon Sep 17 00:00:00 2001
From: Eric Wolf <ericwolf42@gmail.com>
Date: Sat, 27 Oct 2018 23:54:28 +0200
Subject: [PATCH 0097/1129] nixos/release-notes for 18.09: fix missing entry

 - the addition of the groups kvm and render breaks the configuration of
   users, which added them
---
 nixos/doc/manual/release-notes/rl-1809.xml | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/nixos/doc/manual/release-notes/rl-1809.xml b/nixos/doc/manual/release-notes/rl-1809.xml
index 0ddf40acbfcc..8715a05f508b 100644
--- a/nixos/doc/manual/release-notes/rl-1809.xml
+++ b/nixos/doc/manual/release-notes/rl-1809.xml
@@ -637,6 +637,11 @@ $ nix-instantiate -E '(import &lt;nixpkgsunstable&gt; {}).gitFull'
      anyways for clarity.
     </para>
    </listitem>
+   <listitem>
+    <para>
+        Groups <literal>kvm</literal> and <literal>render</literal> are introduced now, as systemd requires them.
+    </para>
+   </listitem>
   </itemizedlist>
  </section>
 

From 9bc10e12916979c5c620be5b521b9218a0077cba Mon Sep 17 00:00:00 2001
From: Sarah Brofeldt <sbrofeldt@gmail.com>
Date: Tue, 30 Oct 2018 09:10:47 +0100
Subject: [PATCH 0098/1129] NixOS tests: Wait for shell for 10x longer (50m)

---
 nixos/lib/test-driver/Machine.pm | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/nixos/lib/test-driver/Machine.pm b/nixos/lib/test-driver/Machine.pm
index a00fe25c2b8e..abcc1c50d4d8 100644
--- a/nixos/lib/test-driver/Machine.pm
+++ b/nixos/lib/test-driver/Machine.pm
@@ -250,7 +250,8 @@ sub connect {
         $self->start;
 
         local $SIG{ALRM} = sub { die "timed out waiting for the VM to connect\n"; };
-        alarm 300;
+        # 50 minutes -- increased as a test, see #49441
+        alarm 3000;
         readline $self->{socket} or die "the VM quit before connecting\n";
         alarm 0;
 

From 74cfbd63e13abb7e0144d5ed821be5e50a3a5d90 Mon Sep 17 00:00:00 2001
From: Stefan Siegl <stesie@brokenpipe.de>
Date: Tue, 30 Oct 2018 10:08:39 +0100
Subject: [PATCH 0099/1129] tomboy: build against mono 5, refs #49369

---
 pkgs/top-level/all-packages.nix | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index d1ab34eba6f2..80864ab1ce6d 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -22720,9 +22720,7 @@ with pkgs;
 
   tomb = callPackage ../os-specific/linux/tomb {};
 
-  tomboy = callPackage ../applications/misc/tomboy {
-    mono = mono46;
-  };
+  tomboy = callPackage ../applications/misc/tomboy { };
 
   imatix_gsl = callPackage ../development/tools/imatix_gsl {};
 

From f51f526f6ba23f143cf54f0c05672aedbc0e3682 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 30 Oct 2018 06:34:49 -0300
Subject: [PATCH 0100/1129] deepin-gtk-theme: 17.10.8 -> 17.10.9 (#49432)

---
 pkgs/desktops/deepin/deepin-gtk-theme/default.nix | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/pkgs/desktops/deepin/deepin-gtk-theme/default.nix b/pkgs/desktops/deepin/deepin-gtk-theme/default.nix
index a36a96771904..c46dea2875ad 100644
--- a/pkgs/desktops/deepin/deepin-gtk-theme/default.nix
+++ b/pkgs/desktops/deepin/deepin-gtk-theme/default.nix
@@ -2,24 +2,24 @@
 
 stdenv.mkDerivation rec {
   name = "deepin-gtk-theme-${version}";
-  version = "17.10.8";
+  version = "17.10.9";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = "deepin-gtk-theme";
     rev = version;
-    sha256 = "1z5f5dnda18gixkjcxpvsavhv9m5l2kq61958fdfm1idi0cbr7fp";
+    sha256 = "02yn76h007hlmrd7syd82f0mz1c79rlkz3gy1w17zxfy0gdvagz3";
   };
 
   propagatedUserEnvPkgs = [ gtk-engine-murrine ];
 
   makeFlags = [ "PREFIX=$(out)" ];
 
-  meta = {
+  meta = with stdenv.lib; {
     description = "Deepin GTK Theme";
     homepage = https://github.com/linuxdeepin/deepin-gtk-theme;
-    license = stdenv.lib.licenses.lgpl3;
-    platforms = stdenv.lib.platforms.unix;
-    maintainers = [ stdenv.lib.maintainers.romildo ];
+    license = licenses.lgpl3;
+    platforms = platforms.unix;
+    maintainers = [ maintainers.romildo ];
   };
 }

From eee6890fc762bee08f96c9342b5f37d6c3b23f38 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 30 Oct 2018 06:35:33 -0300
Subject: [PATCH 0101/1129] matcha: 2018-10-21 -> 2018-10-30 (#49433)

---
 pkgs/misc/themes/matcha/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/misc/themes/matcha/default.nix b/pkgs/misc/themes/matcha/default.nix
index 9967de786399..6e14d1587a75 100644
--- a/pkgs/misc/themes/matcha/default.nix
+++ b/pkgs/misc/themes/matcha/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "matcha-${version}";
-  version = "2018-10-21";
+  version = "2018-10-30";
 
   src = fetchFromGitHub {
     owner = "vinceliuice";
     repo = "matcha";
     rev = version;
-    sha256 = "112xfnwlq9ih72qbfrin78ly7bc4i94my3i6s7yhc46qg1lncl73";
+    sha256 = "1ks30xm7jhyxgs0blxxnc9ygmyfwrwc9k8d0y0i6yb7608p8zxzq";
   };
 
   buildInputs = [ gdk_pixbuf librsvg ];

From 7df72ad92873eac668c315894a2defb6459ac6af Mon Sep 17 00:00:00 2001
From: Jaka Hudoklin <jakahudoklin@gmail.com>
Date: Tue, 30 Oct 2018 10:58:53 +0100
Subject: [PATCH 0102/1129] google-cloud-sdk: 215.0.0 -> 222.0.0

---
 pkgs/tools/admin/google-cloud-sdk/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/tools/admin/google-cloud-sdk/default.nix b/pkgs/tools/admin/google-cloud-sdk/default.nix
index 016ea957f6c7..aa8cc12ece85 100644
--- a/pkgs/tools/admin/google-cloud-sdk/default.nix
+++ b/pkgs/tools/admin/google-cloud-sdk/default.nix
@@ -19,18 +19,18 @@ let
   sources = name: system: {
     x86_64-darwin = {
       url = "${baseUrl}/${name}-darwin-x86_64.tar.gz";
-      sha256 = "1d5z575vw07jk7528bsqgdd875b3zwayrdnidvxpd2n8j4bip654";
+      sha256 = "03ymvfhk8azyvdm6j4pbqx2fsh178kw81yqwkycbhmm6mnyc8yv1";
     };
 
     x86_64-linux = {
       url = "${baseUrl}/${name}-linux-x86_64.tar.gz";
-      sha256 = "0ljslvp68ml5mglrl7kakgkqskbzglf3i5jv5d7jld28d0kbzj2c";
+      sha256 = "1pw4w3v81mp8alm6vxq10242xxwv8rfs59bjxrmy0pfkjgsr4x4v";
     };
   }.${system};
 
 in stdenv.mkDerivation rec {
   name = "google-cloud-sdk-${version}";
-  version = "215.0.0";
+  version = "222.0.0";
 
   src = fetchurl (sources name stdenv.hostPlatform.system);
 

From 64f6b9eb95a98057cca759a5071feced839a5054 Mon Sep 17 00:00:00 2001
From: Timo Kaufmann <timokau@zoho.com>
Date: Tue, 30 Oct 2018 11:18:59 +0100
Subject: [PATCH 0103/1129] pythonPackages.memory_profiler: add plotting
 dependency, enable checks

---
 .../memory_profiler/default.nix               | 28 ++++++++-----------
 1 file changed, 12 insertions(+), 16 deletions(-)

diff --git a/pkgs/development/python-modules/memory_profiler/default.nix b/pkgs/development/python-modules/memory_profiler/default.nix
index 7587e5f33c95..cf976f06ff08 100644
--- a/pkgs/development/python-modules/memory_profiler/default.nix
+++ b/pkgs/development/python-modules/memory_profiler/default.nix
@@ -1,32 +1,28 @@
 { stdenv
-, buildPythonPackage
-, fetchPypi
-, psutil
 , python
 }:
 
-buildPythonPackage rec {
+python.pkgs.buildPythonPackage rec {
   pname = "memory_profiler";
   version = "0.54.0";
 
-  src = fetchPypi {
+  src = python.pkgs.fetchPypi {
     inherit pname version;
-    sha256 = "d64342a23f32e105f4929b408a8b89d9222c3ce8afbbb3359817555811448d1a";
+    sha256 = "06ld8h8mhm8pk0sv7fxgx0y2q8nri65qlh4vjbs0bq9j7yi44hyn";
   };
 
-  propagatedBuildInputs = [ psutil ];
-
-  checkPhase = ''
-    make test PYTHON=${python.interpreter}
-  '';
-
-  # Tests don't import profile
-  # doCheck = false;
+  propagatedBuildInputs = with python.pkgs; [
+    psutil # needed to profile child processes
+    matplotlib # needed for plotting memory usage
+  ];
 
   meta = with stdenv.lib; {
-    description = "A module for monitoring memory usage of a python program";
+    description = "A module for monitoring memory usage of a process";
+    longDescription = ''
+      This is a python module for monitoring memory consumption of a process as
+      well as line-by-line analysis of memory consumption for python programs.
+    '';
     homepage = https://pypi.python.org/pypi/memory_profiler;
     license = licenses.bsd3;
   };
-
 }

From b348f8568fd3e503919021045522995885bddb1a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 23 Oct 2018 09:03:13 -0300
Subject: [PATCH 0104/1129] jwm-settings-manager: init at 2018-10-19

---
 .../jwm/jwm-settings-manager.nix              | 44 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 2 files changed, 46 insertions(+)
 create mode 100644 pkgs/applications/window-managers/jwm/jwm-settings-manager.nix

diff --git a/pkgs/applications/window-managers/jwm/jwm-settings-manager.nix b/pkgs/applications/window-managers/jwm/jwm-settings-manager.nix
new file mode 100644
index 000000000000..3b764e7095be
--- /dev/null
+++ b/pkgs/applications/window-managers/jwm/jwm-settings-manager.nix
@@ -0,0 +1,44 @@
+{ stdenv, fetchFromGitHub, cmake, pkgconfig, gettext, libXpm, libGL, fltk, hicolor-icon-theme, glib, gnome2, which }:
+
+stdenv.mkDerivation rec {
+  name = "jwm-settings-manager-${version}";
+  version = "2018-10-19";
+  
+  src = fetchFromGitHub {
+    owner = "Israel-D";
+    repo = "jwm-settings-manager";
+    rev = "cb32a70563cf1f3927339093481542b85ec3c8c8";
+    sha256 = "0d5bqf74p8zg8azns44g46q973blhmp715k8kcd73x88g7sfir8s";
+  };
+
+  nativeBuildInputs = [
+    cmake
+    pkgconfig
+    gettext
+  ];
+
+  buildInputs = [
+    libXpm
+    libGL
+    fltk
+    hicolor-icon-theme
+    which # needed at runtime to locate optional programs
+    glib.bin # provides gsettings
+    gnome2.GConf # provides gconftool-2
+  ];
+
+  postPatch = ''
+    substituteInPlace CMakeLists.txt \
+      --replace 'CMAKE_INSTALL_PREFIX "/usr"' "CMAKE_INSTALL_PREFIX $out"
+    substituteInPlace data/CMakeLists.txt \
+      --replace 'DESTINATION usr/share' "DESTINATION share"
+  '';
+
+  meta = with stdenv.lib; {
+    description = "A full configuration manager for JWM";
+    homepage = https://joewing.net/projects/jwm;
+    license = licenses.gpl3;
+    platforms = platforms.linux;
+    maintainers = [ maintainers.romildo ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 07068cc29173..3e99997915d5 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -17403,6 +17403,8 @@ with pkgs;
 
   jwm = callPackage ../applications/window-managers/jwm { };
 
+  jwm-settings-manager = callPackage ../applications/window-managers/jwm/jwm-settings-manager.nix { };
+
   k3d = callPackage ../applications/graphics/k3d {
     inherit (pkgs.gnome2) gtkglext;
     stdenv = overrideCC stdenv gcc6;

From ac8acb283c6380d01e6a9d6722ccebb4cdddaa9c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Tue, 30 Oct 2018 11:40:53 +0000
Subject: [PATCH 0105/1129] rambox: fix crash when native filesystem dialogs
 are created

---
 .../instant-messengers/rambox/default.nix     | 21 ++++++++++++++-----
 1 file changed, 16 insertions(+), 5 deletions(-)

diff --git a/pkgs/applications/networking/instant-messengers/rambox/default.nix b/pkgs/applications/networking/instant-messengers/rambox/default.nix
index 7c630e522afe..46157c2a35f3 100644
--- a/pkgs/applications/networking/instant-messengers/rambox/default.nix
+++ b/pkgs/applications/networking/instant-messengers/rambox/default.nix
@@ -1,4 +1,6 @@
-{ stdenv, newScope, makeWrapper, electron, xdg_utils, makeDesktopItem
+{ stdenv, newScope, makeWrapper
+, wrapGAppsHook, gnome3, glib
+, electron, xdg_utils, makeDesktopItem
 , auth0ClientID ? "0spuNKfIGeLAQ_Iki9t3fGxbfJl3k8SU"
 , auth0Domain ? "nixpkgs.auth0.com" }:
 
@@ -26,16 +28,25 @@ with self;
 stdenv.mkDerivation {
   name = "rambox-${rambox-bare.version}";
 
-  nativeBuildInputs = [ makeWrapper ];
+  nativeBuildInputs = [ makeWrapper wrapGAppsHook ];
 
+  buildInputs = [ glib gnome3.gsettings_desktop_schemas ];
   unpackPhase = ":";
 
+  dontWrapGApps = true; # we only want $gappsWrapperArgs here
+
   installPhase = ''
-    makeWrapper ${electron}/bin/electron $out/bin/rambox \
-      --add-flags "${rambox-bare} --without-update" \
-      --prefix PATH : ${xdg_utils}/bin
+    runHook preInstall
     mkdir -p $out/share/applications
     ln -s ${desktopItem}/share/applications/* $out/share/applications
+    runHook postInstall
+  '';
+
+  postFixup = ''
+    makeWrapper ${electron}/bin/electron $out/bin/rambox \
+      --add-flags "${rambox-bare} --without-update" \
+      "''${gappsWrapperArgs[@]}" \
+      --prefix PATH : ${xdg_utils}/bin
   '';
 
   inherit (rambox-bare.meta // {

From 9d9f7d27a1930642de86c6660d0326ce89a61c61 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Tue, 23 Oct 2018 09:58:20 +0100
Subject: [PATCH 0106/1129] SenchaCmd: 6.5.3.6 -> 6.6.0.13

This package is internally used by rambox
---
 .../networking/instant-messengers/rambox/sencha/bare.nix    | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/networking/instant-messengers/rambox/sencha/bare.nix b/pkgs/applications/networking/instant-messengers/rambox/sencha/bare.nix
index af92462a2a49..efecebe169e9 100644
--- a/pkgs/applications/networking/instant-messengers/rambox/sencha/bare.nix
+++ b/pkgs/applications/networking/instant-messengers/rambox/sencha/bare.nix
@@ -1,15 +1,15 @@
 { stdenv, fetchurl, gzip, which, unzip, jdk }:
 
 let
-  version = "6.5.3.6";
+  version = "6.6.0.13";
   srcs = {
     i686-linux = fetchurl {
       url = "https://cdn.sencha.com/cmd/${version}/no-jre/SenchaCmd-${version}-linux-i386.sh.zip";
-      sha256 = "0g3hk3fdgmkdsr6ck1fgsmaxa9wbj2fpk84rk382ff9ny55bbzv9";
+      sha256 = "15b197108b49mf0afpihkh3p68lxm7580zz2w0xsbahglnvhwyfz";
     };
     x86_64-linux = fetchurl {
       url = "https://cdn.sencha.com/cmd/${version}/no-jre/SenchaCmd-${version}-linux-amd64.sh.zip";
-      sha256 = "08j8gak1xsxdjgkv6s24jv97jc49pi5yf906ynjmxb27wqpxn9mz";
+      sha256 = "1cxhckmx1802p9qiw09cgb1v5f30wcvnrwkshmia8p8n0q47lpp4";
     };
   };
 in

From 1dd7443c935eb3c91b0b7201ca68a6e4e0bdf1b0 Mon Sep 17 00:00:00 2001
From: Timo Kaufmann <timokau@zoho.com>
Date: Tue, 30 Oct 2018 11:57:58 +0100
Subject: [PATCH 0107/1129] pythonPackages.sympy: 1.2 -> 1.3

---
 pkgs/development/python-modules/sympy/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/sympy/default.nix b/pkgs/development/python-modules/sympy/default.nix
index fb702e046a48..1bf7511d2bb9 100644
--- a/pkgs/development/python-modules/sympy/default.nix
+++ b/pkgs/development/python-modules/sympy/default.nix
@@ -8,11 +8,11 @@
 
 buildPythonPackage rec {
   pname = "sympy";
-  version = "1.2"; # Upgrades may break sage. Please test.
+  version = "1.3"; # Upgrades may break sage. Please test or ping @timokau.
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0pr2v7dl51ngch1cfs423qsb472l9ys1m8m7vrhhh99fsxqa0v18";
+    sha256 = "0m0vhyv15zszn19mk5xq3py4iijjbr7f3fpy1s57b8q7c9arncg1";
   };
 
   checkInputs = [ glibcLocales ];

From 2380f6a4faa57c6b91fed26c496e1c8ca5d91982 Mon Sep 17 00:00:00 2001
From: Tuomas Tynkkynen <tuomas.tynkkynen@iki.fi>
Date: Tue, 30 Oct 2018 14:27:44 +0200
Subject: [PATCH 0108/1129] nixos/tests/rsyslogd: Fix eval

---
 nixos/tests/rsyslogd.nix | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/nixos/tests/rsyslogd.nix b/nixos/tests/rsyslogd.nix
index 4836419f0c2f..969d59e0f2c2 100644
--- a/nixos/tests/rsyslogd.nix
+++ b/nixos/tests/rsyslogd.nix
@@ -1,10 +1,11 @@
 { system ? builtins.currentSystem }:
 
 with import ../lib/testing.nix { inherit system; };
+with pkgs.lib;
 {
   test1 = makeTest {
     name = "rsyslogd-test1";
-    meta.maintainers = [ lib.maintainers.aanderse ];
+    meta.maintainers = [ maintainers.aanderse ];
 
     machine =
       { config, pkgs, ... }:
@@ -21,7 +22,7 @@ with import ../lib/testing.nix { inherit system; };
 
   test2 = makeTest {
     name = "rsyslogd-test2";
-    meta.maintainers = [ lib.maintainers.aanderse ];
+    meta.maintainers = [ maintainers.aanderse ];
 
     machine =
       { config, pkgs, ... }:

From 02e1f00ffdd0c1a74fbc0be5f314b8921b0c9165 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?L=C3=A9o=20Gaspard?= <leo@gaspard.io>
Date: Sat, 4 Aug 2018 12:18:28 +0900
Subject: [PATCH 0109/1129] dovecot, opensmtpd: add link to test in
 `meta.tests`
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Rationale
---------

Currently, tests are hard to discover. For instance, someone updating
`dovecot` might not notice that the interaction of `dovecot` with
`opensmtpd` is handled in the `opensmtpd.nix` test.

And even for someone updating `opensmtpd`, it requires manual work to go
check in `nixos/tests` whether there is actually a test, especially
given not so many packages in `nixpkgs` have tests and this is thus most
of the time useless.

Finally, for the reviewer, it is much easier to check that the “Tested
via one or more NixOS test(s)” has been checked if the file modified
already includes the list of relevant tests.

Implementation
--------------

Currently, this commit only adds the metadata in the package. Each
element of the `meta.tests` attribute is a derivation that, when it
builds successfully, means the test has passed (ie. following the same
convention as NixOS tests).

Future Work
-----------

In the future, the tools could be made aware of this `meta.tests`
attribute, and for instance a `--with-tests` could be added to
`nix-build` so that it also builds all the tests. Or a `--without-tests`
to build without all the tests. @Profpatsch described in his NixCon talk
such systems.

Another thing that would help in the future would be the possibility to
reasonably easily have cross-derivation nix tests without the whole
NixOS VM stack. @7c6f434c already proposed such a system.

This RFC currently handles none of these concerns. Only the addition of
`meta.tests` as metadata to be used by maintainers to remember to run
relevant tests.
---
 doc/meta.xml                            | 55 +++++++++++++++++++++++++
 nixos/lib/testing.nix                   |  4 +-
 nixos/tests/opensmtpd.nix               |  2 +
 pkgs/servers/mail/dovecot/default.nix   |  4 ++
 pkgs/servers/mail/opensmtpd/default.nix |  5 ++-
 pkgs/stdenv/generic/check-meta.nix      | 12 +++++-
 pkgs/top-level/all-packages.nix         | 20 +++++++++
 7 files changed, 98 insertions(+), 4 deletions(-)

diff --git a/doc/meta.xml b/doc/meta.xml
index 496b32916552..51c7b2dfc88f 100644
--- a/doc/meta.xml
+++ b/doc/meta.xml
@@ -250,6 +250,61 @@ meta.platforms = stdenv.lib.platforms.linux;
      </para>
     </listitem>
    </varlistentry>
+   <varlistentry>
+    <term>
+     <varname>tests</varname>
+    </term>
+    <listitem>
+     <para>
+      An attribute set with as values tests. A test is a derivation, which
+      builds successfully when the test passes, and fails to build otherwise. A
+      derivation that is a test requires some <literal>meta</literal> elements
+      to be defined: <literal>needsVMSupport</literal> (automatically filled-in
+      for NixOS tests) and <literal>timeout</literal>.
+     </para>
+     <para>
+      The NixOS tests are available as <literal>nixosTests</literal> in
+      parameters of derivations. For instance, the OpenSMTPD derivation
+      includes lines similar to:
+<programlisting>
+{ /* ... */, nixosTests }:
+{
+  # ...
+  meta.tests = {
+    basic-functionality-and-dovecot-integration = nixosTests.opensmtpd;
+  };
+}
+</programlisting>
+     </para>
+    </listitem>
+   </varlistentry>
+   <varlistentry>
+    <term>
+     <varname>timeout</varname>
+    </term>
+    <listitem>
+     <para>
+      A timeout (in seconds) for building the derivation. If the derivation
+      takes longer than this time to build, it can fail due to breaking the
+      timeout. However, all computers do not have the same computing power,
+      hence some builders may decide to apply a multiplicative factor to this
+      value. When filling this value in, try to keep it approximately
+      consistent with other values already present in
+      <literal>nixpkgs</literal>.
+     </para>
+    </listitem>
+   </varlistentry>
+   <varlistentry>
+    <term>
+     <varname>needsVMSupport</varname>
+    </term>
+    <listitem>
+     <para>
+      A boolan that states whether the derivation requires build-time support
+      for Virtual Machine to build successfully.
+     </para>
+    </listitem>
+   </varlistentry>
    <varlistentry>
     <term>
      <varname>hydraPlatforms</varname>
diff --git a/nixos/lib/testing.nix b/nixos/lib/testing.nix
index 42a0c60c7e19..8cdf4150057e 100644
--- a/nixos/lib/testing.nix
+++ b/nixos/lib/testing.nix
@@ -69,7 +69,9 @@ in rec {
             mkdir -p $out/coverage-data
             mv $i $out/coverage-data/$(dirname $(dirname $i))
           done
-        ''; # */
+        '';
+
+        meta.needsVMSupport = true;
     };
 
 
diff --git a/nixos/tests/opensmtpd.nix b/nixos/tests/opensmtpd.nix
index 4d3479168f70..883ad7604941 100644
--- a/nixos/tests/opensmtpd.nix
+++ b/nixos/tests/opensmtpd.nix
@@ -120,4 +120,6 @@ import ./make-test.nix {
     $smtp2->waitUntilFails('smtpctl show queue | egrep .');
     $client->succeed('check-mail-landed >&2');
   '';
+
+  meta.timeout = 30;
 }
diff --git a/pkgs/servers/mail/dovecot/default.nix b/pkgs/servers/mail/dovecot/default.nix
index 3e628f876dd7..638393bd356a 100644
--- a/pkgs/servers/mail/dovecot/default.nix
+++ b/pkgs/servers/mail/dovecot/default.nix
@@ -1,6 +1,7 @@
 { stdenv, lib, fetchurl, perl, pkgconfig, systemd, openssl
 , bzip2, zlib, lz4, inotify-tools, pam, libcap
 , clucene_core_2, icu, openldap, libsodium, libstemmer, cyrus_sasl
+, nixosTests
 # Auth modules
 , withMySQL ? false, mysql
 , withPgSQL ? false, postgresql
@@ -74,5 +75,8 @@ stdenv.mkDerivation rec {
     description = "Open source IMAP and POP3 email server written with security primarily in mind";
     maintainers = with stdenv.lib.maintainers; [ peti rickynils fpletz ];
     platforms = stdenv.lib.platforms.unix;
+    tests = {
+      opensmtpd-interaction = nixosTests.opensmtpd;
+    };
   };
 }
diff --git a/pkgs/servers/mail/opensmtpd/default.nix b/pkgs/servers/mail/opensmtpd/default.nix
index d55804504442..236e1dba181e 100644
--- a/pkgs/servers/mail/opensmtpd/default.nix
+++ b/pkgs/servers/mail/opensmtpd/default.nix
@@ -1,5 +1,5 @@
 { stdenv, lib, fetchurl, fetchpatch, autoconf, automake, libtool, bison
-, libasr, libevent, zlib, libressl, db, pam
+, libasr, libevent, zlib, libressl, db, pam, nixosTests
 }:
 
 stdenv.mkDerivation rec {
@@ -61,5 +61,8 @@ stdenv.mkDerivation rec {
     license = licenses.isc;
     platforms = platforms.linux;
     maintainers = with maintainers; [ rickynils obadz ekleog ];
+    tests = {
+      basic-functionality-and-dovecot-interaction = nixosTests.opensmtpd;
+    };
   };
 }
diff --git a/pkgs/stdenv/generic/check-meta.nix b/pkgs/stdenv/generic/check-meta.nix
index 26cd9f8beb96..0e93df855471 100644
--- a/pkgs/stdenv/generic/check-meta.nix
+++ b/pkgs/stdenv/generic/check-meta.nix
@@ -165,6 +165,16 @@ let
     platforms = listOf (either str lib.systems.parsedPlatform.types.system);
     hydraPlatforms = listOf str;
     broken = bool;
+    # TODO: refactor once something like Profpatsch's types-simple will land
+    tests = attrsOf (mkOptionType {
+      name = "test";
+      check = x: isDerivation x &&
+        x ? meta.timeout &&
+        x ? meta.needsVMSupport;
+      merge = lib.options.mergeOneOption;
+    });
+    needsVMSupport = bool;
+    timeout = int;
 
     # Weirder stuff that doesn't appear in the documentation?
     knownVulnerabilities = listOf str;
@@ -184,8 +194,6 @@ let
     isIbusEngine = bool;
     isGutenprint = bool;
     badPlatforms = platforms;
-    # Hydra build timeout
-    timeout = int;
   };
 
   checkMetaAttr = k: v:
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 69e3c196ca57..fed01028d37b 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -71,6 +71,26 @@ with pkgs;
 
   common-updater-scripts = callPackage ../common-updater/scripts.nix { };
 
+  ### Push NixOS tests inside the fixed point
+
+  nixosTests =
+    let
+      # TODO(Ericson2314,ekleog): Check this will work correctly with cross-
+      system = builtins.currentSystem;
+      rawTests = (import ../../nixos/release.nix {
+        nixpkgs = pkgs;
+      }).tests;
+      testNames = builtins.attrNames rawTests;
+      filteredList = builtins.filter
+        (test: rawTests.${test} ? ${system})
+        testNames;
+      finalList = map
+        (test: { name = test; value = rawTests.${test}.${system}; })
+        filteredList;
+      finalTests = builtins.listToAttrs finalList;
+    in
+    finalTests;
+
   ### BUILD SUPPORT
 
   autoreconfHook = makeSetupHook

From 9594b59f1320aa05200bfbec9a425d22408eb488 Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Tue, 23 Oct 2018 16:09:43 +0200
Subject: [PATCH 0110/1129] postgresql10: rename from postgresql100

---
 nixos/tests/postgis.nix                 | 2 +-
 pkgs/servers/sql/postgresql/default.nix | 2 +-
 pkgs/top-level/aliases.nix              | 1 +
 pkgs/top-level/all-packages.nix         | 2 +-
 4 files changed, 4 insertions(+), 3 deletions(-)

diff --git a/nixos/tests/postgis.nix b/nixos/tests/postgis.nix
index f8b63c5b6a27..0ff880e7aa52 100644
--- a/nixos/tests/postgis.nix
+++ b/nixos/tests/postgis.nix
@@ -9,7 +9,7 @@ import ./make-test.nix ({ pkgs, ...} : {
       { pkgs, ... }:
 
       {
-        services.postgresql = let mypg = pkgs.postgresql100; in {
+        services.postgresql = let mypg = pkgs.postgresql10; in {
             enable = true;
             package = mypg;
             extraPlugins = [ (pkgs.postgis.override { postgresql = mypg; }) ];
diff --git a/pkgs/servers/sql/postgresql/default.nix b/pkgs/servers/sql/postgresql/default.nix
index bccd54ca4ba8..6ca172404203 100644
--- a/pkgs/servers/sql/postgresql/default.nix
+++ b/pkgs/servers/sql/postgresql/default.nix
@@ -123,7 +123,7 @@ in {
     sha256 = "09l4zqs74fqnazdsyln9x657mq3wsbgng9wpvq71yh26cv2sq5c6";
   };
 
-  postgresql100 = common {
+  postgresql10 = common {
     version = "10.5";
     psqlSchema = "10.0";
     sha256 = "04a07jkvc5s6zgh6jr78149kcjmsxclizsqabjw44ld4j5n633kc";
diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix
index 8cd54c3a5bdf..eb4f891b45a0 100644
--- a/pkgs/top-level/aliases.nix
+++ b/pkgs/top-level/aliases.nix
@@ -225,6 +225,7 @@ mapAliases ({
   piwik = matomo; # added 2018-01-16
   pltScheme = racket; # just to be sure
   poppler_qt5 = libsForQt5.poppler;  # added 2015-12-19
+  postgresql100 = throw "deprecated 2018-10-21: use postgresql10 instead";
   procps-ng = procps; # added 2018-06-08
   prometheus-statsd-bridge = prometheus-statsd-exporter;  # added 2017-08-27
   pulseaudioLight = pulseaudio; # added 2018-04-25
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 130a3495c6d2..502f7907b1a7 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -13610,7 +13610,7 @@ with pkgs;
     postgresql94
     postgresql95
     postgresql96
-    postgresql100;
+    postgresql10;
 
   postgresql_jdbc = callPackage ../servers/sql/postgresql/jdbc { };
 

From 94360c11e96e816f9c9ac320691c1dc7b5caf4b1 Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Tue, 23 Oct 2018 17:35:37 +0100
Subject: [PATCH 0111/1129] docs: update sample postgresql package

postgresql90 no longer exists in nixpkgs.
---
 nixos/doc/manual/configuration/config-file.xml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/nixos/doc/manual/configuration/config-file.xml b/nixos/doc/manual/configuration/config-file.xml
index 8a1a39c98c10..2c9d42151738 100644
--- a/nixos/doc/manual/configuration/config-file.xml
+++ b/nixos/doc/manual/configuration/config-file.xml
@@ -197,10 +197,10 @@ swapDevices = [ { device = "/dev/disk/by-label/swap"; } ];
     pkgs.emacs
   ];
 
-<xref linkend="opt-services.postgresql.package"/> = pkgs.postgresql90;
+<xref linkend="opt-services.postgresql.package"/> = pkgs.postgresql10;
 </programlisting>
       The latter option definition changes the default PostgreSQL package used
-      by NixOS’s PostgreSQL service to 9.0. For more information on packages,
+      by NixOS’s PostgreSQL service to 10.x. For more information on packages,
       including how to add new ones, see <xref linkend="sec-custom-packages"/>.
      </para>
     </listitem>

From 03062770972b33703f17cc016b7551d03445e34e Mon Sep 17 00:00:00 2001
From: Francesco Gazzetta <francygazz@gmail.com>
Date: Tue, 30 Oct 2018 12:56:57 +0100
Subject: [PATCH 0112/1129] sfxr-qt: init at 1.2.0

---
 pkgs/applications/audio/sfxr-qt/default.nix | 36 +++++++++++++++++++++
 pkgs/top-level/all-packages.nix             |  2 ++
 2 files changed, 38 insertions(+)
 create mode 100644 pkgs/applications/audio/sfxr-qt/default.nix

diff --git a/pkgs/applications/audio/sfxr-qt/default.nix b/pkgs/applications/audio/sfxr-qt/default.nix
new file mode 100644
index 000000000000..a98d1431d65e
--- /dev/null
+++ b/pkgs/applications/audio/sfxr-qt/default.nix
@@ -0,0 +1,36 @@
+{ stdenv, fetchFromGitHub
+, cmake
+, qtbase, qtquickcontrols2
+, SDL
+, python3
+}:
+
+stdenv.mkDerivation rec {
+  name = "sfxr-qt-${version}";
+  version = "1.2.0";
+  src = fetchFromGitHub {
+    owner = "agateau";
+    repo = "sfxr-qt";
+    rev = version;
+    sha256 = "1ndw1dcmzvkrc6gnb0y057zb4lqlhwrv18jlbx26w3s4xrbxqr41";
+    fetchSubmodules = true;
+  };
+  nativeBuildInputs = [
+    cmake
+    (python3.withPackages (pp: with pp; [ pyyaml jinja2 ]))
+  ];
+  buildInputs = [
+    qtbase qtquickcontrols2
+    SDL
+  ];
+  configurePhase = "cmake . -DCMAKE_INSTALL_PREFIX=$out";
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/agateau/sfxr-qt;
+    description = "A sound effect generator, QtQuick port of sfxr";
+    license = licenses.gpl2;
+    maintainers = with maintainers; [ fgaz ];
+    platforms = platforms.linux;
+  };
+}
+
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 80864ab1ce6d..9a8c00bad23a 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -18846,6 +18846,8 @@ with pkgs;
 
   setbfree = callPackage ../applications/audio/setbfree { };
 
+  sfxr-qt = libsForQt5.callPackage ../applications/audio/sfxr-qt { };
+
   shadowfox = callPackage ../tools/networking/shadowfox { };
 
   shfmt = callPackage ../tools/text/shfmt { };

From 863a795281203d8c53281ce5196030528cb94e5a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Tue, 30 Oct 2018 13:55:20 +0100
Subject: [PATCH 0113/1129] home-assistant: 0.81.1 -> 0.81.2

---
 pkgs/servers/home-assistant/component-packages.nix | 10 +++++-----
 pkgs/servers/home-assistant/default.nix            |  8 ++++----
 pkgs/servers/home-assistant/frontend.nix           |  4 ++--
 3 files changed, 11 insertions(+), 11 deletions(-)

diff --git a/pkgs/servers/home-assistant/component-packages.nix b/pkgs/servers/home-assistant/component-packages.nix
index 611fabc43011..73cc01281493 100644
--- a/pkgs/servers/home-assistant/component-packages.nix
+++ b/pkgs/servers/home-assistant/component-packages.nix
@@ -2,7 +2,7 @@
 # Do not edit!
 
 {
-  version = "0.81.1";
+  version = "0.81.2";
   components = {
     "abode" = ps: with ps; [  ];
     "ads" = ps: with ps; [  ];
@@ -322,14 +322,13 @@
     "device_tracker" = ps: with ps; [  ];
     "device_tracker.actiontec" = ps: with ps; [  ];
     "device_tracker.aruba" = ps: with ps; [ pexpect ];
-    "device_tracker.asuswrt" = ps: with ps; [  ];
+    "device_tracker.asuswrt" = ps: with ps; [ pexpect ];
     "device_tracker.automatic" = ps: with ps; [ aiohttp-cors ];
     "device_tracker.bbox" = ps: with ps; [  ];
     "device_tracker.bluetooth_le_tracker" = ps: with ps; [  ];
     "device_tracker.bluetooth_tracker" = ps: with ps; [  ];
     "device_tracker.bmw_connected_drive" = ps: with ps; [  ];
     "device_tracker.bt_home_hub_5" = ps: with ps; [  ];
-    "device_tracker.bt_smarthub" = ps: with ps; [  ];
     "device_tracker.cisco_ios" = ps: with ps; [ pexpect ];
     "device_tracker.ddwrt" = ps: with ps; [  ];
     "device_tracker.demo" = ps: with ps; [  ];
@@ -1097,7 +1096,7 @@
     "sensor.twitch" = ps: with ps; [  ];
     "sensor.uber" = ps: with ps; [  ];
     "sensor.uk_transport" = ps: with ps; [  ];
-    "sensor.upnp" = ps: with ps; [  ];
+    "sensor.upnp" = ps: with ps; [ aiohttp-cors ];
     "sensor.ups" = ps: with ps; [  ];
     "sensor.uptime" = ps: with ps; [  ];
     "sensor.uscis" = ps: with ps; [  ];
@@ -1125,6 +1124,7 @@
     "sensor.xbox_live" = ps: with ps; [  ];
     "sensor.xiaomi_aqara" = ps: with ps; [  ];
     "sensor.xiaomi_miio" = ps: with ps; [ construct ];
+    "sensor.yahoo_finance" = ps: with ps; [  ];
     "sensor.yr" = ps: with ps; [ xmltodict ];
     "sensor.yweather" = ps: with ps; [ yahooweather ];
     "sensor.zabbix" = ps: with ps; [  ];
@@ -1298,7 +1298,7 @@
     "unifi.errors" = ps: with ps; [  ];
     "upcloud" = ps: with ps; [  ];
     "updater" = ps: with ps; [ distro ];
-    "upnp" = ps: with ps; [  ];
+    "upnp" = ps: with ps; [ aiohttp-cors ];
     "upnp.config_flow" = ps: with ps; [  ];
     "upnp.const" = ps: with ps; [  ];
     "upnp.device" = ps: with ps; [  ];
diff --git a/pkgs/servers/home-assistant/default.nix b/pkgs/servers/home-assistant/default.nix
index b3d32ef2ed75..932995513af6 100644
--- a/pkgs/servers/home-assistant/default.nix
+++ b/pkgs/servers/home-assistant/default.nix
@@ -34,8 +34,8 @@ let
       "8d10113ca826a4c29d5b85b2c4e045ffa8bad74fb525ee0eceb1d38d4c70dfd6")
     (mkOverride "cryptography_vectors" "2.3.1" # required by cryptography==2.3.1
       "bf4d9b61dce69c49e830950aa36fad194706463b0b6dfe81425b9e0bc6644d46")
-    (mkOverride "requests" "2.19.1"
-      "ec22d826a36ed72a7358ff3fe56cbd4ba69dd7a6718ffd450ff0e9df7a47ce6a")
+    (mkOverride "requests" "2.20.0"
+      "99dcfdaaeb17caf6e526f32b6a7b780461512ab3f1d992187801694cba42770c")
     (mkOverride "voluptuous" "0.11.5"
       "567a56286ef82a9d7ae0628c5842f65f516abcb496e74f3f59f1d7b28df314ef")
     (mkOverride "voluptuous-serialize" "2.0.0"
@@ -79,7 +79,7 @@ let
   extraBuildInputs = extraPackages py.pkgs;
 
   # Don't forget to run parse-requirements.py after updating
-  hassVersion = "0.81.1";
+  hassVersion = "0.81.2";
 
 in with py.pkgs; buildPythonApplication rec {
   pname = "homeassistant";
@@ -94,7 +94,7 @@ in with py.pkgs; buildPythonApplication rec {
     owner = "home-assistant";
     repo = "home-assistant";
     rev = version;
-    sha256 = "0z686fpcv9xy4dwcphx5npwvvw8gibcqjp6s898dbhscldg0ffmh";
+    sha256 = "0qg3kh99bqhsraa8jpqqrvaxz9l1gsbh3aazg3v0d6q6ng42y2bq";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/servers/home-assistant/frontend.nix b/pkgs/servers/home-assistant/frontend.nix
index 7bf1e6871411..4af2a4ec9220 100644
--- a/pkgs/servers/home-assistant/frontend.nix
+++ b/pkgs/servers/home-assistant/frontend.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "home-assistant-frontend";
-  version = "20181026.0";
+  version = "20181026.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "fa877803ec7201a9b2129e96d6c19822cbcb28fa8ad5d422974bd3c872da1531";
+    sha256 = "ea5e7fb769df2f096e2993c23d1aa3dc8652e0f0aa09a89863af22e095b80aa8";
   };
 
   propagatedBuildInputs = [ user-agents ];

From cc161d738ba60f183da8de2ef43845400e76b839 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Tue, 30 Oct 2018 14:10:44 +0100
Subject: [PATCH 0114/1129] qutebrowser: 1.5.1 -> 1.5.2

---
 pkgs/applications/networking/browsers/qutebrowser/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/browsers/qutebrowser/default.nix b/pkgs/applications/networking/browsers/qutebrowser/default.nix
index bf3debf6c7b8..8b7dfc860275 100644
--- a/pkgs/applications/networking/browsers/qutebrowser/default.nix
+++ b/pkgs/applications/networking/browsers/qutebrowser/default.nix
@@ -28,12 +28,12 @@ let
 
 in python3Packages.buildPythonApplication rec {
   pname = "qutebrowser";
-  version = "1.5.1";
+  version = "1.5.2";
 
   # the release tarballs are different from the git checkout!
   src = fetchurl {
     url = "https://github.com/qutebrowser/qutebrowser/releases/download/v${version}/${pname}-${version}.tar.gz";
-    sha256 = "1yn181gscj04ni58swk6cmggn047q29siqwgn66pvxhfdf0ny7fq";
+    sha256 = "0ki19mynq91aih3kxhipnay3jmn56s7p6rilws0gq0k98li6a4my";
   };
 
   # Needs tox

From b5ad6154743436b5acc791ccec5cde4be36dd18b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Sun, 28 Oct 2018 20:43:34 +0000
Subject: [PATCH 0115/1129] verasco: remove unmaintained project

Verasco is no longer maintained by upstream and blocks updates of some libraries.
Removing it also makes it possible to remove coq 8.4.
---
 .../tools/analysis/verasco/default.nix        | 51 -------------------
 pkgs/top-level/all-packages.nix               |  4 --
 pkgs/top-level/ocaml-packages.nix             | 10 ----
 3 files changed, 65 deletions(-)
 delete mode 100644 pkgs/development/tools/analysis/verasco/default.nix

diff --git a/pkgs/development/tools/analysis/verasco/default.nix b/pkgs/development/tools/analysis/verasco/default.nix
deleted file mode 100644
index 7f623e72dc31..000000000000
--- a/pkgs/development/tools/analysis/verasco/default.nix
+++ /dev/null
@@ -1,51 +0,0 @@
-{ stdenv, lib, fetchurl
-, coq, ocaml, findlib, menhir, zarith
-, tools ? stdenv.cc
-}:
-
-assert lib.versionAtLeast ocaml.version "4.02";
-
-stdenv.mkDerivation rec {
-  name = "verasco-1.3";
-  src = fetchurl {
-    url = "http://compcert.inria.fr/verasco/release/${name}.tgz";
-    sha256 = "0zvljrpwnv443k939zlw1f7ijwx18nhnpr8jl3f01jc5v66hr2k8";
-  };
-
-  buildInputs = [ coq ocaml findlib menhir zarith ];
-
-  preConfigure = ''
-    substituteInPlace ./configure --replace '{toolprefix}gcc' '{toolprefix}cc'
-  '';
-
-  configureFlags = [
-    "-toolprefix ${tools}/bin/"
-    (if stdenv.isDarwin then "ia32-macosx" else "ia32-linux")
-  ];
-
-  prefixKey = "-prefix ";
-
-  enableParallelBuilding = true;
-  buildFlags = "proof extraction ccheck";
-
-  installPhase = ''
-    mkdir -p $out/bin
-    cp ccheck $out/bin/
-    ln -s $out/bin/ccheck $out/bin/verasco
-    if [ -e verasco.ini ]
-    then
-      mkdir -p $out/share
-      cp verasco.ini $out/share/
-    fi
-    mkdir -p $out/lib/compcert
-    cp -riv runtime/include $out/lib/compcert
-  '';
-
-  meta = {
-    homepage = http://compcert.inria.fr/verasco/;
-    description = "A static analyzer for the CompCert subset of ISO C 1999";
-    maintainers = with stdenv.lib.maintainers; [ vbgl ];
-    license = stdenv.lib.licenses.unfree;
-    platforms = with stdenv.lib.platforms; darwin ++ linux;
-  };
-}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 5179e1f3a58a..5127ad2421c7 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -8984,10 +8984,6 @@ with pkgs;
 
   qcachegrind = libsForQt5.callPackage ../development/tools/analysis/qcachegrind {};
 
-  verasco = ocaml-ng.ocamlPackages_4_02.verasco.override {
-    coq = coq_8_4;
-  };
-
   visualvm = callPackage ../development/tools/java/visualvm { };
 
   vultr = callPackage ../development/tools/vultr { };
diff --git a/pkgs/top-level/ocaml-packages.nix b/pkgs/top-level/ocaml-packages.nix
index 62b773c51bf6..2f6992e1c9a5 100644
--- a/pkgs/top-level/ocaml-packages.nix
+++ b/pkgs/top-level/ocaml-packages.nix
@@ -1024,16 +1024,6 @@ let
 
     omake_rc1 = callPackage ../development/tools/ocaml/omake/0.9.8.6-rc1.nix { };
 
-    verasco = callPackage ../development/tools/analysis/verasco ((
-      if system == "x86_64-linux"
-      then { tools = pkgs.pkgsi686Linux.stdenv.cc; }
-      else {}
-    ) // {
-      menhir = callPackage ../development/ocaml-modules/menhir {
-        version = "20170712";
-      };
-    });
-
     google-drive-ocamlfuse = callPackage ../applications/networking/google-drive-ocamlfuse { };
 
 

From 8df0ca2bbcc98a787fccf623a91f5ea79161fce9 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Sun, 28 Oct 2018 20:45:04 +0000
Subject: [PATCH 0116/1129] coq_8_4: remove

verasco was its only user
---
 pkgs/applications/science/logic/coq/8.4.nix   | 97 -------------------
 .../science/logic/coq/configure.patch         | 11 ---
 pkgs/top-level/all-packages.nix               |  2 +-
 pkgs/top-level/coq-packages.nix               |  3 -
 4 files changed, 1 insertion(+), 112 deletions(-)
 delete mode 100644 pkgs/applications/science/logic/coq/8.4.nix
 delete mode 100644 pkgs/applications/science/logic/coq/configure.patch

diff --git a/pkgs/applications/science/logic/coq/8.4.nix b/pkgs/applications/science/logic/coq/8.4.nix
deleted file mode 100644
index c3da1205ab0c..000000000000
--- a/pkgs/applications/science/logic/coq/8.4.nix
+++ /dev/null
@@ -1,97 +0,0 @@
-# - coqide compilation can be disabled by setting lablgtk to null;
-# - The csdp program used for the Micromega tactic is statically referenced.
-#   However, coq can build without csdp by setting it to null.
-#   In this case some Micromega tactics will search the user's path for the csdp program and will fail if it is not found.
-
-{stdenv, fetchurl, pkgconfig, writeText, ocaml, findlib, camlp5, ncurses, lablgtk ? null, csdp ? null}:
-
-let
-  version = "8.4pl6";
-  coq-version = "8.4";
-  buildIde = lablgtk != null;
-  ideFlags = if buildIde then "-lablgtkdir ${lablgtk}/lib/ocaml/*/site-lib/lablgtk2 -coqide opt" else "";
-  csdpPatch = if csdp != null then ''
-    substituteInPlace plugins/micromega/sos.ml --replace "; csdp" "; ${csdp}/bin/csdp"
-    substituteInPlace plugins/micromega/coq_micromega.ml --replace "System.is_in_system_path \"csdp\"" "true"
-  '' else "";
-
-self =
-stdenv.mkDerivation {
-  name = "coq-${version}";
-
-  inherit coq-version;
-  inherit ocaml camlp5;
-
-  src = fetchurl {
-    url = "https://coq.inria.fr/distrib/V${version}/files/coq-${version}.tar.gz";
-    sha256 = "1mpbj4yf36kpjg2v2sln12i8dzqn8rag6fd07hslj2lpm4qs4h55";
-  };
-
-  nativeBuildInputs = [ pkgconfig ];
-  buildInputs = [ ocaml findlib camlp5 ncurses lablgtk ];
-
-  patches = [ ./configure.patch ];
-
-  postPatch = ''
-    UNAME=$(type -tp uname)
-    RM=$(type -tp rm)
-    substituteInPlace configure --replace "/bin/uname" "$UNAME"
-    substituteInPlace tools/beautify-archive --replace "/bin/rm" "$RM"
-    ${csdpPatch}
-  '';
-
-  preConfigure = ''
-    configureFlagsArray=(
-      -opt
-      -camldir ${ocaml}/bin
-      -camlp5dir $(ocamlfind query camlp5)
-      ${ideFlags}
-    )
-  '';
-
-  prefixKey = "-prefix ";
-
-  buildFlags = "revision coq coqide";
-
-  setupHook = writeText "setupHook.sh" ''
-    addCoqPath () {
-      if test -d "''$1/lib/coq/${coq-version}/user-contrib"; then
-        export COQPATH="''${COQPATH}''${COQPATH:+:}''$1/lib/coq/${coq-version}/user-contrib/"
-      fi
-    }
-
-    addEnvHooks "$targetOffset" addCoqPath
-  '';
-
-  passthru = {
-    inherit findlib;
-    emacsBufferSetup = pkgs: ''
-      ; Propagate coq paths to children
-      (inherit-local-permanent coq-prog-name "${self}/bin/coqtop")
-      (inherit-local-permanent coq-dependency-analyzer "${self}/bin/coqdep")
-      (inherit-local-permanent coq-compiler "${self}/bin/coqc")
-      ; If the coq-library path was already set, re-set it based on our current coq
-      (when (fboundp 'get-coq-library-directory)
-        (inherit-local-permanent coq-library-directory (get-coq-library-directory))
-        (coq-prog-args))
-      (mapc (lambda (arg)
-        (when (file-directory-p (concat arg "/lib/coq/${coq-version}/user-contrib"))
-          (setenv "COQPATH" (concat (getenv "COQPATH") ":" arg "/lib/coq/${coq-version}/user-contrib")))) '(${stdenv.lib.concatStringsSep " " (map (pkg: "\"${pkg}\"") pkgs)}))
-    '';
-  };
-
-  meta = with stdenv.lib; {
-    description = "Formal proof management system";
-    longDescription = ''
-      Coq is a formal proof management system.  It provides a formal language
-      to write mathematical definitions, executable algorithms and theorems
-      together with an environment for semi-interactive development of
-      machine-checked proofs.
-    '';
-    homepage = http://coq.inria.fr;
-    license = licenses.lgpl21;
-    branch = coq-version;
-    maintainers = with maintainers; [ roconnor thoughtpolice vbgl ];
-    platforms = platforms.unix;
-  };
-}; in self
diff --git a/pkgs/applications/science/logic/coq/configure.patch b/pkgs/applications/science/logic/coq/configure.patch
deleted file mode 100644
index aa38ce06e92b..000000000000
--- a/pkgs/applications/science/logic/coq/configure.patch
+++ /dev/null
@@ -1,11 +0,0 @@
-diff -Nuar coq-8.3pl3-orig/configure coq-8.3pl3/configure
---- coq-8.3pl3-orig/configure	2011-12-19 22:57:30.000000000 +0100
-+++ coq-8.3pl3/configure	2012-03-17 16:38:16.000000000 +0100
-@@ -395,7 +395,6 @@
- 	 ocamlyaccexec=$CAMLBIN/ocamlyacc
- 	 ocamlmktopexec=$CAMLBIN/ocamlmktop
- 	 ocamlmklibexec=$CAMLBIN/ocamlmklib
--	 camlp4oexec=$CAMLBIN/camlp4o
- esac
- 
- if test ! -f "$CAMLC" ; then
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 5127ad2421c7..f98bf64fdf7b 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -21364,7 +21364,7 @@ with pkgs;
                        ocamlPackages_4_05
     ;
   }) mkCoqPackages
-    coq_8_4 coq_8_5 coq_8_6 coq_8_7 coq_8_8
+    coq_8_5 coq_8_6 coq_8_7 coq_8_8
     coqPackages_8_5 coqPackages_8_6 coqPackages_8_7 coqPackages_8_8
     coqPackages coq
   ;
diff --git a/pkgs/top-level/coq-packages.nix b/pkgs/top-level/coq-packages.nix
index 75e9506ac049..a4f44b6fc6f7 100644
--- a/pkgs/top-level/coq-packages.nix
+++ b/pkgs/top-level/coq-packages.nix
@@ -56,9 +56,6 @@ in rec {
     let self = mkCoqPackages' self coq; in
     filterCoqPackages coq self;
 
-  coq_8_4 = callPackage ../applications/science/logic/coq/8.4.nix {
-    inherit (ocamlPackages_4_02) ocaml findlib lablgtk camlp5;
-  };
   coq_8_5 = callPackage ../applications/science/logic/coq {
     ocamlPackages = ocamlPackages_4_05;
     version = "8.5pl3";

From 1f7fc09176dc9b0260b8e2778f1e6c3139eae6a9 Mon Sep 17 00:00:00 2001
From: Patrick Hilhorst <git@hilhorst.be>
Date: Tue, 30 Oct 2018 14:27:28 +0100
Subject: [PATCH 0117/1129] make-derivation: use a more descriptive assert
 message

As suggested by @Profpatsch
---
 pkgs/stdenv/generic/make-derivation.nix | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pkgs/stdenv/generic/make-derivation.nix b/pkgs/stdenv/generic/make-derivation.nix
index 2ff7db947fe0..cb3731da1934 100644
--- a/pkgs/stdenv/generic/make-derivation.nix
+++ b/pkgs/stdenv/generic/make-derivation.nix
@@ -86,7 +86,8 @@ rec {
     assert lib.assertMsg
       (lib.lists.all (name: builtins.hasAttr name attrs) ["name" "pname" "version"]
         -> lib.strings.hasSuffix "${attrs.pname}-${attrs.version}" attrs.name)
-      "mkDerivation: `name` must be consistent with `pname-version`";
+      ("mkDerivation: `name` (\"${attrs.name}\") must be consistent " +
+       "with `pname-version` \"${attrs.pname}-${attrs.version}\"");
 
     let
       # TODO(@oxij, @Ericson2314): This is here to keep the old semantics, remove when

From c3a7194843a6423bd5875756ba9c1e05e5c9b79a Mon Sep 17 00:00:00 2001
From: Robert Hensing <robert@roberthensing.nl>
Date: Tue, 30 Oct 2018 15:24:08 +0100
Subject: [PATCH 0118/1129] pkgs.nixos: Add example to inline documentation

---
 pkgs/top-level/all-packages.nix | 79 ++++++++++++++++++++-------------
 1 file changed, 47 insertions(+), 32 deletions(-)

diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 130a3495c6d2..84b3adf72974 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -22097,38 +22097,53 @@ with pkgs;
 
   nixops-dns = callPackage ../tools/package-management/nixops/nixops-dns.nix { };
 
-  /*
-   * Evaluate a NixOS configuration using this evaluation of Nixpkgs.
-   *
-   * With this function you can write, for example, a package that
-   * depends on a custom virtual machine image.
-   *
-   * Parameter: A module, path or list of those that represent the
-   *            configuration of the NixOS system to be constructed.
-   *
-   * Result:    An attribute set containing packages produced by this
-   *            evaluation of NixOS, such as toplevel, kernel and
-   *            initialRamdisk.
-   *            The result can be extended in the modules by defining
-   *            extra options in system.build.
-   *
-   * Unlike in plain NixOS, the nixpkgs.config, nixpkgs.overlays and
-   * nixpkgs.system options will be ignored by default. Instead,
-   * nixpkgs.pkgs will have the default value of pkgs as it was
-   * constructed right after invoking the nixpkgs function (e.g. the
-   * value of import <nixpkgs> { overlays = [./my-overlay.nix]; }
-   * but not the value of (import <nixpkgs> {} // { extra = ...; }).
-   *
-   * If you do want to use the config.nixpkgs options, you are
-   * probably better off by calling nixos/lib/eval-config.nix
-   * directly, even though it is possible to set config.nixpkgs.pkgs.
-   *
-   * For more information about writing NixOS modules, see
-   * https://nixos.org/nixos/manual/index.html#sec-writing-modules
-   *
-   * Note that you will need to have called Nixpkgs with the system
-   * parameter set to the right value for your deployment target.
-   */
+  /* Evaluate a NixOS configuration using this evaluation of Nixpkgs.
+
+     With this function you can write, for example, a package that
+     depends on a custom virtual machine image.
+
+     Parameter: A module, path or list of those that represent the
+                configuration of the NixOS system to be constructed.
+
+     Result:    An attribute set containing packages produced by this
+                evaluation of NixOS, such as toplevel, kernel and
+                initialRamdisk.
+                The result can be extended in the modules by defining
+                extra attributes in system.build.
+
+     Example:
+
+         let
+           myOS = pkgs.nixos ({ lib, pkgs, config, ... }: {
+
+             config.services.nginx = {
+               enable = true;
+               # ...
+             };
+
+             # This exports a runner for nginx
+             config.system.build.run-nginx = config.systemd.services.nginx.runner;
+           });
+         in
+           myOS.run-nginx
+
+     Unlike in plain NixOS, the nixpkgs.config, nixpkgs.overlays and
+     nixpkgs.system options will be ignored by default. Instead,
+     nixpkgs.pkgs will have the default value of pkgs as it was
+     constructed right after invoking the nixpkgs function (e.g. the
+     value of import <nixpkgs> { overlays = [./my-overlay.nix]; }
+     but not the value of (import <nixpkgs> {} // { extra = ...; }).
+
+     If you do want to use the config.nixpkgs options, you are
+     probably better off by calling nixos/lib/eval-config.nix
+     directly, even though it is possible to set config.nixpkgs.pkgs.
+
+     For more information about writing NixOS modules, see
+     https://nixos.org/nixos/manual/index.html#sec-writing-modules
+
+     Note that you will need to have called Nixpkgs with the system
+     parameter set to the right value for your deployment target.
+  */
   nixos = configuration:
     (import (self.path + "/nixos/lib/eval-config.nix") {
       inherit (pkgs.stdenv.hostPlatform) system;

From c6c7d55790b603db68ee43a55c20e503281eeda4 Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Tue, 23 Oct 2018 17:22:14 +0100
Subject: [PATCH 0119/1129] postgresql*: use underscores in version numbers

---
 .../administration/declarative-containers.xml    |  2 +-
 nixos/doc/manual/configuration/config-file.xml   |  2 +-
 nixos/modules/services/databases/postgresql.nix  | 10 +++++-----
 nixos/modules/services/databases/postgresql.xml  |  8 ++++----
 nixos/modules/virtualisation/containers.nix      |  2 +-
 nixos/release.nix                                |  2 +-
 nixos/tests/postgis.nix                          |  2 +-
 pkgs/development/libraries/postgis/default.nix   |  2 +-
 pkgs/servers/sql/postgresql/default.nix          | 10 +++++-----
 pkgs/top-level/aliases.nix                       |  6 +++++-
 pkgs/top-level/all-packages.nix                  | 16 ++++++++--------
 11 files changed, 33 insertions(+), 29 deletions(-)

diff --git a/nixos/doc/manual/administration/declarative-containers.xml b/nixos/doc/manual/administration/declarative-containers.xml
index 2a98fb126231..d03dbc4d7055 100644
--- a/nixos/doc/manual/administration/declarative-containers.xml
+++ b/nixos/doc/manual/administration/declarative-containers.xml
@@ -15,7 +15,7 @@ containers.database =
   { config =
       { config, pkgs, ... }:
       { <xref linkend="opt-services.postgresql.enable"/> = true;
-      <xref linkend="opt-services.postgresql.package"/> = pkgs.postgresql96;
+      <xref linkend="opt-services.postgresql.package"/> = pkgs.postgresql_9_6;
       };
   };
 </programlisting>
diff --git a/nixos/doc/manual/configuration/config-file.xml b/nixos/doc/manual/configuration/config-file.xml
index 2c9d42151738..c77cfe137baa 100644
--- a/nixos/doc/manual/configuration/config-file.xml
+++ b/nixos/doc/manual/configuration/config-file.xml
@@ -197,7 +197,7 @@ swapDevices = [ { device = "/dev/disk/by-label/swap"; } ];
     pkgs.emacs
   ];
 
-<xref linkend="opt-services.postgresql.package"/> = pkgs.postgresql10;
+<xref linkend="opt-services.postgresql.package"/> = pkgs.postgresql_10;
 </programlisting>
       The latter option definition changes the default PostgreSQL package used
       by NixOS’s PostgreSQL service to 10.x. For more information on packages,
diff --git a/nixos/modules/services/databases/postgresql.nix b/nixos/modules/services/databases/postgresql.nix
index de2a757196a5..6edb1503c233 100644
--- a/nixos/modules/services/databases/postgresql.nix
+++ b/nixos/modules/services/databases/postgresql.nix
@@ -55,7 +55,7 @@ in
 
       package = mkOption {
         type = types.package;
-        example = literalExample "pkgs.postgresql96";
+        example = literalExample "pkgs.postgresql_9_6";
         description = ''
           PostgreSQL package to use.
         '';
@@ -118,7 +118,7 @@ in
       extraPlugins = mkOption {
         type = types.listOf types.path;
         default = [];
-        example = literalExample "[ (pkgs.postgis.override { postgresql = pkgs.postgresql94; }) ]";
+        example = literalExample "[ (pkgs.postgis.override { postgresql = pkgs.postgresql_9_4; }) ]";
         description = ''
           When this list contains elements a new store path is created.
           PostgreSQL and the elements are symlinked into it. Then pg_config,
@@ -167,9 +167,9 @@ in
       # Note: when changing the default, make it conditional on
       # ‘system.stateVersion’ to maintain compatibility with existing
       # systems!
-      mkDefault (if versionAtLeast config.system.stateVersion "17.09" then pkgs.postgresql96
-            else if versionAtLeast config.system.stateVersion "16.03" then pkgs.postgresql95
-            else pkgs.postgresql94);
+      mkDefault (if versionAtLeast config.system.stateVersion "17.09" then pkgs.postgresql_9_6
+            else if versionAtLeast config.system.stateVersion "16.03" then pkgs.postgresql_9_5
+            else pkgs.postgresql_9_4);
 
     services.postgresql.dataDir =
       mkDefault (if versionAtLeast config.system.stateVersion "17.09" then "/var/lib/postgresql/${config.services.postgresql.package.psqlSchema}"
diff --git a/nixos/modules/services/databases/postgresql.xml b/nixos/modules/services/databases/postgresql.xml
index f89f0d653164..14f4d4909bc0 100644
--- a/nixos/modules/services/databases/postgresql.xml
+++ b/nixos/modules/services/databases/postgresql.xml
@@ -27,12 +27,12 @@
    <filename>configuration.nix</filename>:
 <programlisting>
 <xref linkend="opt-services.postgresql.enable"/> = true;
-<xref linkend="opt-services.postgresql.package"/> = pkgs.postgresql94;
+<xref linkend="opt-services.postgresql.package"/> = pkgs.postgresql_9_4;
 </programlisting>
    Note that you are required to specify the desired version of PostgreSQL
-   (e.g. <literal>pkgs.postgresql94</literal>). Since upgrading your PostgreSQL
-   version requires a database dump and reload (see below), NixOS cannot
-   provide a default value for
+   (e.g. <literal>pkgs.postgresql_9_4</literal>). Since upgrading your
+   PostgreSQL version requires a database dump and reload (see below), NixOS
+   cannot provide a default value for
    <xref linkend="opt-services.postgresql.package"/> such as the most recent
    release of PostgreSQL.
   </para>
diff --git a/nixos/modules/virtualisation/containers.nix b/nixos/modules/virtualisation/containers.nix
index 8fe59badd335..572092a2ba94 100644
--- a/nixos/modules/virtualisation/containers.nix
+++ b/nixos/modules/virtualisation/containers.nix
@@ -606,7 +606,7 @@ in
               { config =
                   { config, pkgs, ... }:
                   { services.postgresql.enable = true;
-                    services.postgresql.package = pkgs.postgresql96;
+                    services.postgresql.package = pkgs.postgresql_9_6;
 
                     system.stateVersion = "17.03";
                   };
diff --git a/nixos/release.nix b/nixos/release.nix
index 46dbe4aa77b2..51505d6aab9d 100644
--- a/nixos/release.nix
+++ b/nixos/release.nix
@@ -468,7 +468,7 @@ in rec {
       { services.httpd.enable = true;
         services.httpd.adminAddr = "foo@example.org";
         services.postgresql.enable = true;
-        services.postgresql.package = pkgs.postgresql93;
+        services.postgresql.package = pkgs.postgresql_9_3;
         environment.systemPackages = [ pkgs.php ];
       });
   };
diff --git a/nixos/tests/postgis.nix b/nixos/tests/postgis.nix
index 0ff880e7aa52..2a9b477bf237 100644
--- a/nixos/tests/postgis.nix
+++ b/nixos/tests/postgis.nix
@@ -9,7 +9,7 @@ import ./make-test.nix ({ pkgs, ...} : {
       { pkgs, ... }:
 
       {
-        services.postgresql = let mypg = pkgs.postgresql10; in {
+        services.postgresql = let mypg = pkgs.postgresql_10; in {
             enable = true;
             package = mypg;
             extraPlugins = [ (pkgs.postgis.override { postgresql = mypg; }) ];
diff --git a/pkgs/development/libraries/postgis/default.nix b/pkgs/development/libraries/postgis/default.nix
index 04fdeea1fa0b..37cf29c86581 100644
--- a/pkgs/development/libraries/postgis/default.nix
+++ b/pkgs/development/libraries/postgis/default.nix
@@ -16,7 +16,7 @@
   ### NixOS - usage:
   ==================
 
-    services.postgresql.extraPlugins = [ (pkgs.postgis.override { postgresql = pkgs.postgresql95; }) ];
+    services.postgresql.extraPlugins = [ (pkgs.postgis.override { postgresql = pkgs.postgresql_9_5; }) ];
 
 
   ### important Postgis implementation details:
diff --git a/pkgs/servers/sql/postgresql/default.nix b/pkgs/servers/sql/postgresql/default.nix
index 6ca172404203..423583bfe87e 100644
--- a/pkgs/servers/sql/postgresql/default.nix
+++ b/pkgs/servers/sql/postgresql/default.nix
@@ -99,31 +99,31 @@ let
 
 in {
 
-  postgresql93 = common {
+  postgresql_9_3 = common {
     version = "9.3.24";
     psqlSchema = "9.3";
     sha256 = "1a8dnv16n2rxnbwhqw7c0kjpj3xqvkpwk50kvimj4d917cxaf542";
   };
 
-  postgresql94 = common {
+  postgresql_9_4 = common {
     version = "9.4.19";
     psqlSchema = "9.4";
     sha256 = "12qn9h47rkn4k41gdbxkkvg0pff43k1113jmhc83f19adc1nnxq3";
   };
 
-  postgresql95 = common {
+  postgresql_9_5 = common {
     version = "9.5.14";
     psqlSchema = "9.5";
     sha256 = "0k8s62h6qd9p3xlx315j5irniskqsnx1nz4ir5r1yhqp07mdab1y";
   };
 
-  postgresql96 = common {
+  postgresql_9_6 = common {
     version = "9.6.10";
     psqlSchema = "9.6";
     sha256 = "09l4zqs74fqnazdsyln9x657mq3wsbgng9wpvq71yh26cv2sq5c6";
   };
 
-  postgresql10 = common {
+  postgresql_10 = common {
     version = "10.5";
     psqlSchema = "10.0";
     sha256 = "04a07jkvc5s6zgh6jr78149kcjmsxclizsqabjw44ld4j5n633kc";
diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix
index eb4f891b45a0..c0d322b89d88 100644
--- a/pkgs/top-level/aliases.nix
+++ b/pkgs/top-level/aliases.nix
@@ -225,7 +225,11 @@ mapAliases ({
   piwik = matomo; # added 2018-01-16
   pltScheme = racket; # just to be sure
   poppler_qt5 = libsForQt5.poppler;  # added 2015-12-19
-  postgresql100 = throw "deprecated 2018-10-21: use postgresql10 instead";
+  postgresql93 = postgresql_9_3;
+  postgresql94 = postgresql_9_4;
+  postgresql95 = postgresql_9_5;
+  postgresql96 = postgresql_9_6;
+  postgresql100 = throw "deprecated 2018-10-21: use postgresql_10 instead";
   procps-ng = procps; # added 2018-06-08
   prometheus-statsd-bridge = prometheus-statsd-exporter;  # added 2017-08-27
   pulseaudioLight = pulseaudio; # added 2018-04-25
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 502f7907b1a7..a282be8e614a 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -13595,22 +13595,22 @@ with pkgs;
 
   pgbouncer = callPackage ../servers/sql/pgbouncer { };
 
-  pgpool93 = pgpool.override { postgresql = postgresql93; };
-  pgpool94 = pgpool.override { postgresql = postgresql94; };
+  pgpool93 = pgpool.override { postgresql = postgresql_9_3; };
+  pgpool94 = pgpool.override { postgresql = postgresql_9_4; };
 
   pgpool = callPackage ../servers/sql/pgpool {
     pam = if stdenv.isLinux then pam else null;
     libmemcached = null; # Detection is broken upstream
   };
 
-  postgresql = postgresql96;
+  postgresql = postgresql_9_6;
 
   inherit (callPackages ../servers/sql/postgresql { })
-    postgresql93
-    postgresql94
-    postgresql95
-    postgresql96
-    postgresql10;
+    postgresql_9_3
+    postgresql_9_4
+    postgresql_9_5
+    postgresql_9_6
+    postgresql_10;
 
   postgresql_jdbc = callPackage ../servers/sql/postgresql/jdbc { };
 

From 91c746cacc3db360f960132ffda7fe1351a3b33d Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Thu, 18 Oct 2018 14:52:29 +0100
Subject: [PATCH 0120/1129] postgresql_11: init at 11.0

---
 nixos/tests/postgis.nix                 | 2 +-
 pkgs/servers/sql/postgresql/default.nix | 6 ++++++
 pkgs/top-level/all-packages.nix         | 3 ++-
 3 files changed, 9 insertions(+), 2 deletions(-)

diff --git a/nixos/tests/postgis.nix b/nixos/tests/postgis.nix
index 2a9b477bf237..49be0672a8e5 100644
--- a/nixos/tests/postgis.nix
+++ b/nixos/tests/postgis.nix
@@ -9,7 +9,7 @@ import ./make-test.nix ({ pkgs, ...} : {
       { pkgs, ... }:
 
       {
-        services.postgresql = let mypg = pkgs.postgresql_10; in {
+        services.postgresql = let mypg = pkgs.postgresql_11; in {
             enable = true;
             package = mypg;
             extraPlugins = [ (pkgs.postgis.override { postgresql = mypg; }) ];
diff --git a/pkgs/servers/sql/postgresql/default.nix b/pkgs/servers/sql/postgresql/default.nix
index 423583bfe87e..b81b4340d767 100644
--- a/pkgs/servers/sql/postgresql/default.nix
+++ b/pkgs/servers/sql/postgresql/default.nix
@@ -129,4 +129,10 @@ in {
     sha256 = "04a07jkvc5s6zgh6jr78149kcjmsxclizsqabjw44ld4j5n633kc";
   };
 
+  postgresql_11 = common {
+    version = "11.0";
+    psqlSchema = "11.0";
+    sha256 = "0szk9ssfych1wlpyqxz3z6dllg1l6m5labpii8c2r463s01vm6xz";
+  };
+
 }
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index a282be8e614a..e2593b6394bd 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -13610,7 +13610,8 @@ with pkgs;
     postgresql_9_4
     postgresql_9_5
     postgresql_9_6
-    postgresql_10;
+    postgresql_10
+    postgresql_11;
 
   postgresql_jdbc = callPackage ../servers/sql/postgresql/jdbc { };
 

From 5bde0f600264b3e94267e31befe0fd550adc869c Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Tue, 30 Oct 2018 12:37:33 +0000
Subject: [PATCH 0121/1129] release notes: update for postgres rename

---
 nixos/doc/manual/release-notes/rl-1903.xml | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/nixos/doc/manual/release-notes/rl-1903.xml b/nixos/doc/manual/release-notes/rl-1903.xml
index 7d04d009a060..9c07184613e4 100644
--- a/nixos/doc/manual/release-notes/rl-1903.xml
+++ b/nixos/doc/manual/release-notes/rl-1903.xml
@@ -145,6 +145,13 @@
      format.
     </para>
    </listitem>
+   <listitem>
+    <para>
+     The versioned <varname>postgresql</varname> have been renamed to use
+     underscore number seperators. For example, <varname>postgresql96</varname>
+     has been renamed to <varname>postgresql_9_6</varname>.
+    </para>
+   </listitem>
   </itemizedlist>
  </section>
 

From 334dd6f96463e09760b1854cb0fab8d6a1230538 Mon Sep 17 00:00:00 2001
From: Lassulus <github@lassul.us>
Date: Tue, 30 Oct 2018 15:37:41 +0100
Subject: [PATCH 0122/1129] nixos/bitlbee: use purple-2 as purple_plugin_path
 (#49440)

---
 nixos/modules/services/networking/bitlbee.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nixos/modules/services/networking/bitlbee.nix b/nixos/modules/services/networking/bitlbee.nix
index 46e3b7457610..274b36171608 100644
--- a/nixos/modules/services/networking/bitlbee.nix
+++ b/nixos/modules/services/networking/bitlbee.nix
@@ -33,7 +33,7 @@ let
 
   purple_plugin_path =
     lib.concatMapStringsSep ":"
-      (plugin: "${plugin}/lib/pidgin/")
+      (plugin: "${plugin}/lib/pidgin/:${plugin}/lib/purple-2/")
       cfg.libpurple_plugins
     ;
 

From 3358e256b1291ccc07a28d2f1dd0609ffce0cca0 Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Tue, 30 Oct 2018 10:58:24 -0400
Subject: [PATCH 0123/1129] bamf: 0.5.3 -> 2018-02-07, fix build

Technically this is 0.5.4 but it's unreleased
---
 pkgs/development/libraries/bamf/default.nix | 48 +++++++++++++--------
 1 file changed, 30 insertions(+), 18 deletions(-)

diff --git a/pkgs/development/libraries/bamf/default.nix b/pkgs/development/libraries/bamf/default.nix
index 0a2badea7cbf..3fcdbca34f5f 100644
--- a/pkgs/development/libraries/bamf/default.nix
+++ b/pkgs/development/libraries/bamf/default.nix
@@ -1,54 +1,66 @@
-{ stdenv, fetchurl, libgtop, libwnck3, glib, vala, pkgconfig
-, libstartup_notification, gobjectIntrospection, gtk-doc
+{ stdenv, autoconf, automake, libtool, gnome3, which, fetchgit, libgtop, libwnck3, glib, vala, pkgconfig
+, libstartup_notification, gobjectIntrospection, gtk-doc, docbook_xsl
 , xorgserver, dbus, python2 }:
 
 stdenv.mkDerivation rec {
-  pname = "bamf";
-  version = "0.5.3";
-  name = "${pname}-${version}";
+  name = "bamf-2018-02-07";
 
   outputs = [ "out" "dev" "devdoc" ];
 
-  src = fetchurl {
-    url = "https://launchpad.net/${pname}/0.5/${version}/+download/${name}.tar.gz";
-    sha256 = "051vib8ndp09ph5bfwkgmzda94varzjafwxf6lqx7z1s8rd7n39l";
+  src = fetchgit {
+    url = https://git.launchpad.net/~unity-team/bamf;
+    rev = "0.5.3+18.04.20180207.2-0ubuntu1";
+    sha256 = "0hvbgzi0mzzzvcamd9mi1ykbk2l6zxffspyk5fpik8bij56nhzym";
   };
 
   nativeBuildInputs = [
-    pkgconfig
-    gtk-doc
+    autoconf
+    automake
+    docbook_xsl
+    gnome3.gnome-common
     gobjectIntrospection
+    gtk-doc
+    libtool
+    pkgconfig
     vala
+    which
     # Tests
-    xorgserver
+    python2
+    python2.pkgs.libxslt
+    python2.pkgs.libxml2
     dbus
-    (python2.withPackages (pkgs: with pkgs; [ libxslt libxml2 ]))
+    xorgserver
   ];
 
   buildInputs = [
-    libgtop
-    libwnck3
-    libstartup_notification
     glib
+    libgtop
+    libstartup_notification
+    libwnck3
   ];
 
   # Fix hard-coded path
   # https://bugs.launchpad.net/bamf/+bug/1780557
   postPatch = ''
-    substituteInPlace data/Makefile.in \
+    substituteInPlace data/Makefile.am \
       --replace '/usr/lib/systemd/user' '@prefix@/lib/systemd/user'
   '';
 
   configureFlags = [
     "--enable-headless-tests"
+    "--enable-gtk-doc"
   ];
 
   # fix paths
   makeFlags = [
-    "INTROSPECTION_GIRDIR=$(dev)/share/gir-1.0/"
-    "INTROSPECTION_TYPELIBDIR=$(out)/lib/girepository-1.0"
+    "INTROSPECTION_GIRDIR=${placeholder ''dev''}/share/gir-1.0/"
+    "INTROSPECTION_TYPELIBDIR=${placeholder ''out''}/lib/girepository-1.0"
   ];
 
+  preConfigure = ''
+    ./autogen.sh
+  '';
+
   # TODO: Requires /etc/machine-id
   doCheck = false;
 

From 0385cb33c623d000052875b1c47f129e5850378f Mon Sep 17 00:00:00 2001
From: Eelco Dolstra <edolstra@gmail.com>
Date: Mon, 29 Oct 2018 12:49:13 +0100
Subject: [PATCH 0124/1129] libeditline: Use multiple outputs

Also disable static build by default per Nixpkgs policy. (Really
static libraries should be moved to the 'dev' output, in which case it
wouldn't be a problem to enable them by default.)
---
 pkgs/development/libraries/editline/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/libraries/editline/default.nix b/pkgs/development/libraries/editline/default.nix
index dc44c7d8705f..90e3ee9af5b2 100644
--- a/pkgs/development/libraries/editline/default.nix
+++ b/pkgs/development/libraries/editline/default.nix
@@ -12,7 +12,7 @@ stdenv.mkDerivation rec {
 
   nativeBuildInputs = [ autoreconfHook ];
 
-  dontDisableStatic = true;
+  outputs = [ "out" "dev" "man" "doc" ];
 
   meta = with stdenv.lib; {
     homepage = http://troglobit.com/editline.html;

From 81b2bfaf36582d5e2cd4c823aaadf03139314f74 Mon Sep 17 00:00:00 2001
From: Eelco Dolstra <edolstra@gmail.com>
Date: Tue, 30 Oct 2018 16:01:16 +0100
Subject: [PATCH 0125/1129] nixUnstable: 2.2pre6520_18b4c53f ->
 2.2pre6526_9f99d624

---
 pkgs/tools/package-management/nix/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/tools/package-management/nix/default.nix b/pkgs/tools/package-management/nix/default.nix
index 030571d6a911..ea03570bb3e5 100644
--- a/pkgs/tools/package-management/nix/default.nix
+++ b/pkgs/tools/package-management/nix/default.nix
@@ -160,12 +160,12 @@ in rec {
 
   nixUnstable = (lib.lowPrio (common rec {
     name = "nix-2.2${suffix}";
-    suffix = "pre6520_18b4c53f";
+    suffix = "pre6526_9f99d624";
     src = fetchFromGitHub {
       owner = "NixOS";
       repo = "nix";
-      rev = "18b4c53f71dfc626f5f5ffa0282afd1b9faad6a4";
-      sha256 = "1hn7bjrf6x7024nald7nk1c9m8fyddkzhazl7pwf6ssmiv12apxh";
+      rev = "9f99d62480cf7c58c0a110b180f2096b7d25adab";
+      sha256 = "0fkmx7gmgg0yij9kw52fkyvib88hj1jsj90vbpy13ccfwknh1044";
     };
     fromGit = true;
   })) // { perl-bindings = perl-bindings {

From 88155c643af06bcffae7023a2e0f667108555a8d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Tue, 30 Oct 2018 16:03:29 +0100
Subject: [PATCH 0126/1129] getmail: 5.6 -> 5.7

---
 pkgs/tools/networking/getmail/default.nix | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

diff --git a/pkgs/tools/networking/getmail/default.nix b/pkgs/tools/networking/getmail/default.nix
index ac69fd992658..56b7320a1b26 100644
--- a/pkgs/tools/networking/getmail/default.nix
+++ b/pkgs/tools/networking/getmail/default.nix
@@ -1,13 +1,12 @@
 { stdenv, fetchurl, python2Packages }:
 
 python2Packages.buildPythonApplication rec {
-  version = "5.6";
-  name = "getmail-${version}";
-  namePrefix = "";
+  pname = "getmail";
+  version = "5.7";
 
   src = fetchurl {
-    url = "http://pyropus.ca/software/getmail/old-versions/${name}.tar.gz";
-    sha256 = "16nmvj80szr6yvcxxgmxn2lxqpjqqj4xg5a0b66zhvck6j42q3a6";
+    url = "http://pyropus.ca/software/getmail/old-versions/${pname}-${version}.tar.gz";
+    sha256 = "1ygv78ihjyrh60657bl8pc17a5dqawdkfh32h8hrd4kwwxlsd5r4";
   };
 
   doCheck = false;

From efd3f8b57ff81f263a961c740396b4eb205aa955 Mon Sep 17 00:00:00 2001
From: markuskowa <markus.kowalewski@gmail.com>
Date: Tue, 30 Oct 2018 16:15:53 +0100
Subject: [PATCH 0127/1129] virtualgl-lib: fix broken startup script (#49185)

Replace /bin/sh with bash in vglrun.
'exec' fails with /bin/sh
---
 pkgs/tools/X11/virtualgl/lib.nix | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/pkgs/tools/X11/virtualgl/lib.nix b/pkgs/tools/X11/virtualgl/lib.nix
index 4c911e756330..b3495b189a67 100644
--- a/pkgs/tools/X11/virtualgl/lib.nix
+++ b/pkgs/tools/X11/virtualgl/lib.nix
@@ -19,6 +19,12 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
+  postPatch = ''
+    # script calls exec, which fails with plain sh
+    substituteInPlace ./server/vglrun.in \
+      --replace '#!/bin/sh' '#!/usr/bin/env bash'
+  '';
+
   meta = with stdenv.lib; {
     homepage = http://www.virtualgl.org/;
     description = "X11 GL rendering in a remote computer with full 3D hw acceleration";

From 3a2336798f9547b2b74d889f03b3e137d7670eec Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Dani=C3=ABl=20de=20Kok?= <me@github.danieldk.eu>
Date: Tue, 30 Oct 2018 16:36:21 +0100
Subject: [PATCH 0128/1129] pyo3-pack: init at 0.3.8 (#46754)

---
 .../tools/rust/pyo3-pack/default.nix          | 35 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  1 +
 2 files changed, 36 insertions(+)
 create mode 100644 pkgs/development/tools/rust/pyo3-pack/default.nix

diff --git a/pkgs/development/tools/rust/pyo3-pack/default.nix b/pkgs/development/tools/rust/pyo3-pack/default.nix
new file mode 100644
index 000000000000..05c57e46b893
--- /dev/null
+++ b/pkgs/development/tools/rust/pyo3-pack/default.nix
@@ -0,0 +1,35 @@
+{ stdenv, fetchFromGitHub, rustPlatform, dbus, gmp, openssl, pkgconfig
+, darwin }:
+
+let
+  inherit (darwin.apple_sdk.frameworks) Security;
+in rustPlatform.buildRustPackage rec {
+  name = "pyo3-pack-${version}";
+  version = "0.3.8";
+
+  src = fetchFromGitHub {
+    owner = "PyO3";
+    repo = "pyo3-pack";
+    rev = "v${version}";
+    sha256 = "14343209w7wphkqh7pnw08pah09spjbwhk6l548g9ivra057gwaz";
+  };
+
+  cargoSha256 = "0n7z9p3v92ijqc2ix60wi74as5rql61k5qbqi8b1b02b71xmsp7j";
+
+  nativeBuildInputs = [ pkgconfig ];
+
+  buildInputs = [ gmp openssl ]
+    ++ stdenv.lib.optional stdenv.isDarwin Security
+    ++ stdenv.lib.optional stdenv.isLinux dbus;
+
+  # Requires network access, fails in sandbox.
+  doCheck = false;
+
+  meta = with stdenv.lib; {
+    description = "Build and publish crates with pyo3 bindings as python packages";
+    homepage = https://github.com/PyO3/pyo3-pack;
+    license = licenses.mit;
+    maintainers = [ maintainers.danieldk ];
+    platforms = platforms.all;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index f1b290afd1ff..c0dd1f8b4d0f 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -7382,6 +7382,7 @@ with pkgs;
   cargo-asm = callPackage ../development/tools/rust/cargo-asm { };
   cargo-fuzz = callPackage ../development/tools/rust/cargo-fuzz { };
 
+  pyo3-pack = callPackage ../development/tools/rust/pyo3-pack { };
   rainicorn = callPackage ../development/tools/rust/rainicorn { };
   rustfmt = callPackage ../development/tools/rust/rustfmt { };
   rustracer = callPackage ../development/tools/rust/racer { };

From 95c66dac70e367fd8663523557c13f58ae609a0a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Tue, 30 Oct 2018 16:42:37 +0100
Subject: [PATCH 0129/1129] python.pkgs.datadog: 0.20.0 -> 0.23.0

---
 .../development/python-modules/datadog/default.nix | 14 +++++---------
 1 file changed, 5 insertions(+), 9 deletions(-)

diff --git a/pkgs/development/python-modules/datadog/default.nix b/pkgs/development/python-modules/datadog/default.nix
index 47c206fda5e8..7b15d412610a 100644
--- a/pkgs/development/python-modules/datadog/default.nix
+++ b/pkgs/development/python-modules/datadog/default.nix
@@ -1,18 +1,14 @@
-{ lib, buildPythonPackage, fetchFromGitHub
+{ lib, buildPythonPackage, fetchPypi
 , decorator, requests, simplejson
 , nose, mock }:
 
 buildPythonPackage rec {
   pname = "datadog";
-  version = "0.20.0";
+  version = "0.23.0";
 
-  # no tests in PyPI tarball
-  # https://github.com/DataDog/datadogpy/pull/259
-  src = fetchFromGitHub {
-    owner = "DataDog";
-    repo = "datadogpy";
-    rev = "v${version}";
-    sha256 = "1p4p14853yrsl8py4ca7za7a12qzw0xwgz64f5kzx8a6vpv3p3md";
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "6ed9aec2b3a26722b74465c2ed36d2efdb9c9fac1a07a84d81fa2fc0cfa66ae4";
   };
 
   propagatedBuildInputs = [ decorator requests simplejson ];

From 698197d38a9cb83c558aa579c1fb52cf072a3b0d Mon Sep 17 00:00:00 2001
From: Will Dietz <github@wdtz.org>
Date: Tue, 30 Oct 2018 10:54:54 -0500
Subject: [PATCH 0130/1129] gmime3: 3.2.0 -> 3.2.1, enable tests, now uses
 libidn2 (#49390)

NEWS:

https://raw.githubusercontent.com/jstedfast/gmime/87405143bb870a6977b7170706a04d747341b425/NEWS
---
 pkgs/development/libraries/gmime/3.nix | 10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)

diff --git a/pkgs/development/libraries/gmime/3.nix b/pkgs/development/libraries/gmime/3.nix
index 65c99610a5c7..63d00f1dd1a7 100644
--- a/pkgs/development/libraries/gmime/3.nix
+++ b/pkgs/development/libraries/gmime/3.nix
@@ -1,17 +1,17 @@
-{ stdenv, fetchurl, pkgconfig, glib, zlib, gnupg, gpgme, libidn, gobjectIntrospection }:
+{ stdenv, fetchurl, pkgconfig, glib, zlib, gnupg, gpgme, libidn2, libunistring, gobjectIntrospection }:
 
 stdenv.mkDerivation rec {
-  version = "3.2.0";
+  version = "3.2.1";
   name = "gmime-${version}";
 
   src = fetchurl {
     url = "mirror://gnome/sources/gmime/3.2/${name}.tar.xz";
-    sha256 = "1q6palbpf6lh6bvy9ly26q5apl5k0z0r4mvl6zzqh90rz4rn1v3m";
+    sha256 = "0q65nalxzpyjg37gdlpj9v6028wp0qx47z96q0ff6znw217nzzjn";
   };
 
   outputs = [ "out" "dev" ];
 
-  buildInputs = [ gobjectIntrospection zlib gpgme libidn ];
+  buildInputs = [ gobjectIntrospection zlib gpgme libidn2 libunistring ];
   nativeBuildInputs = [ pkgconfig ];
   propagatedBuildInputs = [ glib ];
   configureFlags = [ "--enable-introspection=yes" ];
@@ -23,6 +23,8 @@ stdenv.mkDerivation rec {
 
   checkInputs = [ gnupg ];
 
+  doCheck = true;
+
   enableParallelBuilding = true;
 
   meta = with stdenv.lib; {

From 888034f6cac0e63ca72ef495ce9a77fb33939ae9 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?L=C3=A9o=20Gaspard?= <leo@gaspard.io>
Date: Wed, 31 Oct 2018 01:05:35 +0900
Subject: [PATCH 0131/1129] dhparams module: add self as maintainer

---
 nixos/modules/security/dhparams.nix | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/nixos/modules/security/dhparams.nix b/nixos/modules/security/dhparams.nix
index e2b84c3e3b38..62a499ea624d 100644
--- a/nixos/modules/security/dhparams.nix
+++ b/nixos/modules/security/dhparams.nix
@@ -170,4 +170,6 @@ in {
       '';
     }) cfg.params;
   };
+
+  meta.maintainers = with lib.maintainers; [ ekleog ];
 }

From 9b34f47b7cd6b53f7e65d73f7d9f6a9923f46eb3 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?L=C3=A9o=20Gaspard?= <leo@gaspard.io>
Date: Wed, 31 Oct 2018 01:05:49 +0900
Subject: [PATCH 0132/1129] clamsmtp module: add self as maintainer

---
 nixos/modules/services/mail/clamsmtp.nix | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/nixos/modules/services/mail/clamsmtp.nix b/nixos/modules/services/mail/clamsmtp.nix
index 8f4f39aa7288..fc1267c5d280 100644
--- a/nixos/modules/services/mail/clamsmtp.nix
+++ b/nixos/modules/services/mail/clamsmtp.nix
@@ -176,4 +176,6 @@ in
         }
       ) cfg.instances);
     };
+
+  meta.maintainers = with lib.maintainers; [ ekleog ];
 }

From 930bcbda83c8c2042f956712a60a1ebc16af55f8 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?L=C3=A9o=20Gaspard?= <leo@gaspard.io>
Date: Wed, 31 Oct 2018 01:06:04 +0900
Subject: [PATCH 0133/1129] dkimproxy-out module: add self as maintainer

---
 nixos/modules/services/mail/dkimproxy-out.nix | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/nixos/modules/services/mail/dkimproxy-out.nix b/nixos/modules/services/mail/dkimproxy-out.nix
index 894b88e25c1b..f4ac9e47007a 100644
--- a/nixos/modules/services/mail/dkimproxy-out.nix
+++ b/nixos/modules/services/mail/dkimproxy-out.nix
@@ -115,4 +115,6 @@ in
         };
       };
     };
+
+  meta.maintainers = with lib.maintainers; [ ekleog ];
 }

From b9faae955c75d62a4aab28a5a34a1f7b606432aa Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?L=C3=A9o=20Gaspard?= <leo@gaspard.io>
Date: Wed, 31 Oct 2018 01:06:14 +0900
Subject: [PATCH 0134/1129] redsocks module: add self as maintainer

---
 nixos/modules/services/networking/redsocks.nix | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/nixos/modules/services/networking/redsocks.nix b/nixos/modules/services/networking/redsocks.nix
index a47a78f1005e..8481f9debf39 100644
--- a/nixos/modules/services/networking/redsocks.nix
+++ b/nixos/modules/services/networking/redsocks.nix
@@ -267,4 +267,6 @@ in
             "ip46tables -t nat -D OUTPUT -p tcp ${redCond block} -j ${chain} 2>/dev/null || true"
         ) cfg.redsocks;
     };
+
+  meta.maintainers = with lib.maintainers; [ ekleog ];
 }

From e54079133e27567262349a648852ec8f8aa2a0fc Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?L=C3=A9o=20Gaspard?= <leo@gaspard.io>
Date: Wed, 31 Oct 2018 01:06:27 +0900
Subject: [PATCH 0135/1129] global-platform-pro: add self as maintainer

---
 pkgs/development/tools/global-platform-pro/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/development/tools/global-platform-pro/default.nix b/pkgs/development/tools/global-platform-pro/default.nix
index ab32216de80d..9841e7900cd5 100644
--- a/pkgs/development/tools/global-platform-pro/default.nix
+++ b/pkgs/development/tools/global-platform-pro/default.nix
@@ -62,6 +62,7 @@ stdenv.mkDerivation rec {
     '';
     homepage = https://github.com/martinpaljak/GlobalPlatformPro;
     license = with licenses; [ lgpl3 ];
+    maintainers = with maintainers; [ ekleog ];
     platforms = platforms.all;
   };
 }

From 1873e39acfdde68249314e757de6e35c0667812f Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Tue, 30 Oct 2018 09:07:48 -0700
Subject: [PATCH 0136/1129] python36Packages.cassandra-driver: 3.6.0 -> 3.15.1
 (#49018)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-cassandra-driver/versions
---
 pkgs/development/python-modules/cassandra-driver/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/cassandra-driver/default.nix b/pkgs/development/python-modules/cassandra-driver/default.nix
index 110cd1e0bd5b..c445c21478b0 100644
--- a/pkgs/development/python-modules/cassandra-driver/default.nix
+++ b/pkgs/development/python-modules/cassandra-driver/default.nix
@@ -20,11 +20,11 @@
 
 buildPythonPackage rec {
   pname = "cassandra-driver";
-  version = "3.6.0";
+  version = "3.15.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1aqmy3psn12lxgp659d0zsxkirxzy5lnbnzxf9xjq1a93s3qm704";
+    sha256 = "1xcirbvlj00id8269akhk8gy2sv0mlnbgy3nagi32648jwsrcadg";
   };
 
   buildInputs = [ pkgs.libev cython ];

From 39662cf61c42a6c89ee8dc5b95bbf89c33f8bcdc Mon Sep 17 00:00:00 2001
From: Lizard <tmplt@dragons.rocks>
Date: Tue, 30 Oct 2018 17:33:59 +0100
Subject: [PATCH 0137/1129] pbpst: init at unstable-2018-01-11 (#49459)

---
 pkgs/applications/misc/pbpst/default.nix | 49 ++++++++++++++++++++++++
 pkgs/top-level/all-packages.nix          |  2 +
 2 files changed, 51 insertions(+)
 create mode 100644 pkgs/applications/misc/pbpst/default.nix

diff --git a/pkgs/applications/misc/pbpst/default.nix b/pkgs/applications/misc/pbpst/default.nix
new file mode 100644
index 000000000000..fcf88200133c
--- /dev/null
+++ b/pkgs/applications/misc/pbpst/default.nix
@@ -0,0 +1,49 @@
+{ llvmPackages, stdenv, fetchFromGitHub
+, python36Packages, which, pkgconfig, curl, git, gettext, jansson
+
+# Optional overrides
+, maxFileSize ? 64 # in MB
+, provider ? "https://ptpb.pw/"
+}:
+
+llvmPackages.stdenv.mkDerivation rec {
+  version = "unstable-2018-01-11";
+  name = "pbpst-${version}";
+
+  src = fetchFromGitHub {
+    owner = "HalosGhost";
+    repo = "pbpst";
+    rev = "ecbe08a0b72a6e4212f09fc6cf52a73506992346";
+    sha256 = "0dwhmw1dg4hg75nlvk5kmvv3slz2n3b9x65q4ig16agwqfsp4mdm";
+  };
+
+  nativeBuildInputs = [
+    python36Packages.sphinx
+    which
+    pkgconfig
+    curl
+    git
+    gettext
+  ];
+  buildInputs = [ curl jansson ];
+
+  patchPhase = ''
+    patchShebangs ./configure
+
+    # Remove hardcoded check for libs in /usr/lib/
+    sed -e '64,67d' -i ./configure
+  '';
+
+  configureFlags = [
+    "--file-max=${toString (maxFileSize * 1024 * 1024)}" # convert to bytes
+    "--provider=${provider}"
+  ];
+
+  meta = with stdenv.lib; {
+    description = "A command-line libcurl C client for pb deployments";
+    inherit (src.meta) homepage;
+    license = licenses.gpl2;
+    platforms = platforms.linux;
+    maintainers = with maintainers; [ tmplt ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index c0dd1f8b4d0f..955258c9871b 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -1529,6 +1529,8 @@ with pkgs;
 
   patdiff = callPackage ../tools/misc/patdiff { };
 
+  pbpst = callPackage ../applications/misc/pbpst { };
+
   pbzx = callPackage ../tools/compression/pbzx { };
 
   pev = callPackage ../development/tools/analysis/pev { };

From f129ed25a04090e5427efd3200101ca47c1b002d Mon Sep 17 00:00:00 2001
From: Gabriel Ebner <gebner@gebner.org>
Date: Tue, 30 Oct 2018 18:27:52 +0100
Subject: [PATCH 0138/1129] khal: fix build

Upgrading icalendar to 4.0.3 broke the pinned dateutil version.
Luckily khal 0.9.10 now works with dateutil 2.7, so we no longer need to
override it.  However now one test in khal fails (the string output
changed from icalendar 4.0.2 to 4.0.3)...
---
 pkgs/applications/misc/khal/default.nix | 23 +++++------------------
 1 file changed, 5 insertions(+), 18 deletions(-)

diff --git a/pkgs/applications/misc/khal/default.nix b/pkgs/applications/misc/khal/default.nix
index b94d067dd18d..bc2c8978a67e 100644
--- a/pkgs/applications/misc/khal/default.nix
+++ b/pkgs/applications/misc/khal/default.nix
@@ -1,22 +1,6 @@
 { stdenv, pkgs, python3 }:
 
-let
-  python = python3.override {
-    packageOverrides = self: super: {
-
-      # https://github.com/pimutils/khal/issues/780
-      python-dateutil = super.python-dateutil.overridePythonAttrs (oldAttrs: rec {
-        version = "2.6.1";
-        src = oldAttrs.src.override {
-          inherit version;
-          sha256 = "891c38b2a02f5bb1be3e4793866c8df49c7d19baabf9c1bad62547e0b4866aca";
-        };
-      });
-
-    };
-  };
-
-in with python.pkgs; buildPythonApplication rec {
+with python3.pkgs; buildPythonApplication rec {
   pname = "khal";
   version = "0.9.10";
 
@@ -50,6 +34,9 @@ in with python.pkgs; buildPythonApplication rec {
     install -D misc/__khal $out/share/zsh/site-functions/__khal
   '';
 
+  # One test fails as of 0.9.10 due to the upgrade to icalendar 4.0.3
+  doCheck = false;
+
   checkPhase = ''
     py.test
   '';
@@ -58,6 +45,6 @@ in with python.pkgs; buildPythonApplication rec {
     homepage = http://lostpackets.de/khal/;
     description = "CLI calendar application";
     license = licenses.mit;
-    maintainers = with maintainers; [ jgeerds ];
+    maintainers = with maintainers; [ jgeerds gebner ];
   };
 }

From 0cf2c6fcfe2055a255b0f20eb122ebecc68dbf4a Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Wed, 10 Oct 2018 18:13:07 -0400
Subject: [PATCH 0139/1129] pythonPackages.numericalunits: init at 1.16

---
 .../python-modules/numericalunits/default.nix | 24 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 26 insertions(+)
 create mode 100644 pkgs/development/python-modules/numericalunits/default.nix

diff --git a/pkgs/development/python-modules/numericalunits/default.nix b/pkgs/development/python-modules/numericalunits/default.nix
new file mode 100644
index 000000000000..1212bf0039c9
--- /dev/null
+++ b/pkgs/development/python-modules/numericalunits/default.nix
@@ -0,0 +1,24 @@
+{ stdenv
+, buildPythonPackage
+, fetchPypi
+}:
+
+buildPythonPackage rec {
+  version = "1.16";
+  pname = "numericalunits";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "71ae8e236c7a223bccefffb670dca68be476dd63b7b9009641fc64099455da25";
+  };
+
+  # no tests
+  doCheck = false;
+
+  meta = with stdenv.lib; {
+    homepage = http://pypi.python.org/pypi/numericalunits;
+    description = "A package that lets you define quantities with unit";
+    license = licenses.mit;
+    maintainers = [ maintainers.costrouc ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index b2cff4940c13..c292c06fc3a7 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -428,6 +428,8 @@ in {
 
   nvchecker = callPackage ../development/python-modules/nvchecker { };
 
+  numericalunits = callPackage ../development/python-modules/numericalunits { };
+
   oauthenticator = callPackage ../development/python-modules/oauthenticator { };
 
   ordered-set = callPackage ../development/python-modules/ordered-set { };

From 7dd7190a576bdb8c5f504370f0ea0c3160562e59 Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Wed, 10 Oct 2018 18:13:36 -0400
Subject: [PATCH 0140/1129] pythonPackages.DataModelDict: init at 0.9.4

---
 .../python-modules/datamodeldict/default.nix  | 27 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 29 insertions(+)
 create mode 100644 pkgs/development/python-modules/datamodeldict/default.nix

diff --git a/pkgs/development/python-modules/datamodeldict/default.nix b/pkgs/development/python-modules/datamodeldict/default.nix
new file mode 100644
index 000000000000..9aac803ccae1
--- /dev/null
+++ b/pkgs/development/python-modules/datamodeldict/default.nix
@@ -0,0 +1,27 @@
+{ stdenv
+, buildPythonPackage
+, fetchPypi
+, xmltodict
+}:
+
+buildPythonPackage rec {
+  version = "0.9.4";
+  pname = "DataModelDict";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "97d8e999e000cf69c48e57b1a72eb45a27d83576a38c6cd8550c230b018be7af";
+  };
+
+  propagatedBuildInputs = [ xmltodict ];
+
+  # no tests
+  doCheck = false;
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/usnistgov/DataModelDict/;
+    description = "Class allowing for data models equivalently represented as Python dictionaries, JSON, and XML";
+    license = licenses.mit;
+    maintainers = [ maintainers.costrouc ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index c292c06fc3a7..dcddc42d1771 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -284,6 +284,8 @@ in {
 
   btchip = callPackage ../development/python-modules/btchip { };
 
+  datamodeldict = callPackage ../development/python-modules/datamodeldict { };
+
   dbf = callPackage ../development/python-modules/dbf { };
 
   dbfread = callPackage ../development/python-modules/dbfread { };

From 1ac9d8ea407dc7262cdb5acdf290bd3a26f536c8 Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Wed, 10 Oct 2018 18:13:56 -0400
Subject: [PATCH 0141/1129] pythonPackages.atomman: init at 1.2.3

---
 .../python-modules/atomman/default.nix        | 40 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 +
 2 files changed, 42 insertions(+)
 create mode 100644 pkgs/development/python-modules/atomman/default.nix

diff --git a/pkgs/development/python-modules/atomman/default.nix b/pkgs/development/python-modules/atomman/default.nix
new file mode 100644
index 000000000000..ce4408b84412
--- /dev/null
+++ b/pkgs/development/python-modules/atomman/default.nix
@@ -0,0 +1,40 @@
+{ stdenv
+, buildPythonPackage
+, fetchPypi
+, xmltodict
+, datamodeldict
+, numpy
+, matplotlib
+, scipy
+, pandas
+, cython
+, numericalunits
+, pytest
+}:
+
+buildPythonPackage rec {
+  version = "1.2.3";
+  pname = "atomman";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "9eb6acc5497263cfa89be8d0f383a9a69f0726b4ac6798c1b1d96f26705ec09c";
+  };
+
+  checkInputs = [ pytest ];
+  propagatedBuildInputs = [ xmltodict datamodeldict numpy matplotlib scipy pandas cython numericalunits ];
+
+  # tests not included with Pypi release
+  doCheck = false;
+
+  checkPhase = ''
+    py.test tests
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/usnistgov/atomman/;
+    description = "Atomistic Manipulation Toolkit";
+    license = licenses.mit;
+    maintainers = [ maintainers.costrouc ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index dcddc42d1771..70335098c2e4 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -212,6 +212,8 @@ in {
 
   aws-adfs = callPackage ../development/python-modules/aws-adfs { };
 
+  atomman = callPackage ../development/python-modules/atomman { };
+
   # packages defined elsewhere
 
   amazon_kclpy = callPackage ../development/python-modules/amazon_kclpy { };

From 4cfeb9da53cc667f1463aab5da173f2a06e6d244 Mon Sep 17 00:00:00 2001
From: Patrick Hilhorst <git@hilhorst.be>
Date: Tue, 30 Oct 2018 19:02:36 +0100
Subject: [PATCH 0142/1129] cudatoolkit, cudnn: many updates

cudatoolkit_9_1: 9.1.85.1 -> 9.1.85.3
cudatoolkit_9_2: init at 9.2.148.1
cudatoolkit_9: 9.1.85.1 -> 9.2.148.1
cudatoolkit_10, cudatoolkit_10_0: init at 10.0.130

cudnn_cudatoolkit_9_0: 7.0.5 -> 7.3.0
cudnn_cudatoolkit_9_1: init at 7.1.3
cudnn_cudatoolkit_9_2: init at 7.2.1
cudnn_cudatoolkit_9: 7.0.5 (9.1) -> 7.3.1 (9.2)
cudnn_cudatoolkit_10, cudnn_cudatoolkit_10_0: init at 7.3.1
---
 .../compilers/cudatoolkit/default.nix         | 40 ++++++++++++++++---
 .../libraries/science/math/cudnn/default.nix  | 40 +++++++++++++------
 pkgs/top-level/all-packages.nix               | 12 +++++-
 3 files changed, 73 insertions(+), 19 deletions(-)

diff --git a/pkgs/development/compilers/cudatoolkit/default.nix b/pkgs/development/compilers/cudatoolkit/default.nix
index e44c21abe946..7a062a552150 100644
--- a/pkgs/development/compilers/cudatoolkit/default.nix
+++ b/pkgs/development/compilers/cudatoolkit/default.nix
@@ -149,8 +149,7 @@ let
       };
     };
 
-in {
-
+in rec {
   cudatoolkit_6 = common {
     version = "6.0.37";
     url = "http://developer.download.nvidia.com/compute/cuda/6_0/rel/installers/cuda_6.0.37_linux_64.run";
@@ -199,8 +198,8 @@ in {
     gcc = gcc6;
   };
 
-  cudatoolkit_9 = common {
-    version = "9.1.85.1";
+  cudatoolkit_9_1 = common {
+    version = "9.1.85.3";
     url = "https://developer.nvidia.com/compute/cuda/9.1/Prod/local_installers/cuda_9.1.85_387.26_linux";
     sha256 = "0lz9bwhck1ax4xf1fyb5nicb7l1kssslj518z64iirpy2qmwg5l4";
     runPatches = [
@@ -208,9 +207,40 @@ in {
         url = "https://developer.nvidia.com/compute/cuda/9.1/Prod/patches/1/cuda_9.1.85.1_linux";
         sha256 = "1f53ij5nb7g0vb5pcpaqvkaj1x4mfq3l0mhkfnqbk8sfrvby775g";
       })
+      (fetchurl {
+        url = "https://developer.nvidia.com/compute/cuda/9.1/Prod/patches/2/cuda_9.1.85.2_linux";
+        sha256 = "16g0w09h3bqmas4hy1m0y6j5ffyharslw52fn25gql57bfihg7ym";
+      })
+      (fetchurl {
+        url = "https://developer.nvidia.com/compute/cuda/9.1/Prod/patches/3/cuda_9.1.85.3_linux";
+        sha256 = "12mcv6f8z33z8y41ja8bv5p5iqhv2vx91mv3b5z6fcj7iqv98422";
+      })
     ];
     gcc = gcc6;
   };
 
-}
+  cudatoolkit_9_2 = common {
+    version = "9.2.148.1";
+    url = "https://developer.nvidia.com/compute/cuda/9.2/Prod2/local_installers/cuda_9.2.148_396.37_linux";
+    sha256 = "04c6v9b50l4awsf9w9zj5vnxvmc0hk0ypcfjksbh4vnzrz14wigm";
+    runPatches = [
+      (fetchurl {
+        url = "https://developer.nvidia.com/compute/cuda/9.2/Prod2/patches/1/cuda_9.2.148.1_linux";
+        sha256 = "1kx6l4yzsamk6q1f4vllcpywhbfr2j5wfl4h5zx8v6dgfpsjm2lw";
+      })
+    ];
+    gcc = gcc6;
+  };
 
+  cudatoolkit_9 = cudatoolkit_9_2;
+
+  cudatoolkit_10_0 = common {
+    version = "10.0.130";
+    url = "https://developer.nvidia.com/compute/cuda/10.0/Prod/local_installers/cuda_10.0.130_410.48_linux";
+    sha256 = "16p3bv1lwmyqpxil8r951h385sy9asc578afrc7lssa68c71ydcj";
+
+    gcc = gcc6;
+  };
+
+  cudatoolkit_10 = cudatoolkit_10_0;
+}
diff --git a/pkgs/development/libraries/science/math/cudnn/default.nix b/pkgs/development/libraries/science/math/cudnn/default.nix
index c89e9e4296cf..b41469c215e2 100644
--- a/pkgs/development/libraries/science/math/cudnn/default.nix
+++ b/pkgs/development/libraries/science/math/cudnn/default.nix
@@ -1,13 +1,11 @@
-{ callPackage, cudatoolkit_7, cudatoolkit_7_5, cudatoolkit_8, cudatoolkit_9_0, cudatoolkit_9 }:
+{ callPackage, cudatoolkit_7, cudatoolkit_7_5, cudatoolkit_8, cudatoolkit_9_0, cudatoolkit_9_1, cudatoolkit_9_2, cudatoolkit_10_0 }:
 
 let
   generic = args: callPackage (import ./generic.nix (removeAttrs args ["cudatoolkit"])) {
     inherit (args) cudatoolkit;
   };
 
-in
-
-{
+in rec {
   cudnn_cudatoolkit_7 = generic rec {
     # Old URL is v4 instead of v4.0 for some reason...
     version = "4";
@@ -38,16 +36,34 @@ in
   };
 
   cudnn_cudatoolkit_9_0 = generic rec {
-    version = "7.0.5";
+    version = "7.3.0";
     cudatoolkit = cudatoolkit_9_0;
-    srcName = "cudnn-${cudatoolkit.majorVersion}-linux-x64-v7.tgz";
-    sha256 = "03mbv4m5lhwnc181xz8li067pjzzhxqbxgnrfc68dffm8xj0fghs";
+    srcName = "cudnn-${cudatoolkit.majorVersion}-linux-x64-v7.3.0.29.tgz";
+    sha256 = "16z4vgbcmbayk4hppz0xshgs3g07blkp4j25cxcjqyrczx1r0gs0";
   };
 
-  cudnn_cudatoolkit_9 = generic rec {
-    version = "7.0.5";
-    cudatoolkit = cudatoolkit_9;
-    srcName = "cudnn-${cudatoolkit.majorVersion}-linux-x64-v7.tgz";
-    sha256 = "1rfmdd2v47p83fm3sfyvik31gci0q17qs6kjng6mvcsd6akmvb8y";
+  cudnn_cudatoolkit_9_1 = generic rec {
+    version = "7.1.3";
+    cudatoolkit = cudatoolkit_9_1;
+    srcName = "cudnn-${cudatoolkit.majorVersion}-linux-x64-v7.1.tgz";
+    sha256 = "0a0237gpr0p63s92njai0xvxmkbailzgfsvh7n9fnz0njhvnsqfx";
   };
+
+  cudnn_cudatoolkit_9_2 = generic rec {
+    version = "7.2.1";
+    cudatoolkit = cudatoolkit_9_2;
+    srcName = "cudnn-${cudatoolkit.majorVersion}-linux-x64-v7.2.1.38.tgz";
+    sha256 = "1sf215wm6zgr17gs6sxfhw61b7a0qmcxiwhgy1b4nqdyxpqgay1y";
+  };
+
+  cudnn_cudatoolkit_9 = cudnn_cudatoolkit_9_2;
+
+  cudnn_cudatoolkit_10_0 = generic rec {
+    version = "7.3.1";
+    cudatoolkit = cudatoolkit_10_0;
+    srcName = "cudnn-${cudatoolkit.majorVersion}-linux-x64-v7.3.1.20.tgz";
+    sha256 = "1yp35mng4ym40g5rqp63dcpa6jg4q1pnjkspnhlakzzdy8is65af";
+  };
+
+  cudnn_cudatoolkit_10 = cudnn_cudatoolkit_10_0;
 }
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index f98bf64fdf7b..ccb910a7c97b 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -2058,8 +2058,12 @@ with pkgs;
     cudatoolkit_7
     cudatoolkit_7_5
     cudatoolkit_8
+    cudatoolkit_9
     cudatoolkit_9_0
-    cudatoolkit_9;
+    cudatoolkit_9_1
+    cudatoolkit_9_2
+    cudatoolkit_10
+    cudatoolkit_10_0;
 
   cudatoolkit = cudatoolkit_9;
 
@@ -2069,7 +2073,11 @@ with pkgs;
     cudnn6_cudatoolkit_8
     cudnn_cudatoolkit_8
     cudnn_cudatoolkit_9
-    cudnn_cudatoolkit_9_0;
+    cudnn_cudatoolkit_9_0
+    cudnn_cudatoolkit_9_1
+    cudnn_cudatoolkit_9_2
+    cudnn_cudatoolkit_10
+    cudnn_cudatoolkit_10_0;
 
   cudnn = cudnn_cudatoolkit_9;
 

From ae66a9244b28e14320a24b97bc1c8a29f2e7c87d Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Fri, 14 Sep 2018 02:10:49 -0400
Subject: [PATCH 0143/1129] hoomd-blue: init at 2.3.4

---
 .../python-modules/hoomd-blue/default.nix     | 67 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  4 ++
 2 files changed, 71 insertions(+)
 create mode 100644 pkgs/development/python-modules/hoomd-blue/default.nix

diff --git a/pkgs/development/python-modules/hoomd-blue/default.nix b/pkgs/development/python-modules/hoomd-blue/default.nix
new file mode 100644
index 000000000000..3463f471c5eb
--- /dev/null
+++ b/pkgs/development/python-modules/hoomd-blue/default.nix
@@ -0,0 +1,67 @@
+{ stdenv, buildPythonPackage, fetchgit
+, cmake, pkgconfig
+, python
+, mpi ? null
+}:
+
+let components = {
+     cgcmm = true;
+     depreciated = true;
+     hpmc = true;
+     md = true;
+     metal = true;
+     testing = false;
+   };
+   onOffBool = b: if b then "ON" else "OFF";
+   withMPI = (mpi != null);
+in
+stdenv.mkDerivation rec {
+  version = "2.3.4";
+  name = "hoomd-blue-${version}";
+
+  src = fetchgit {
+    url = "https://bitbucket.org/glotzer/hoomd-blue";
+    rev = "v${version}";
+    sha256 = "0in49f1dvah33nl5n2qqbssfynb31pw1ds07j8ziryk9w252j1al";
+  };
+
+  passthru = {
+    inherit components mpi;
+  };
+
+  nativeBuildInputs = [ cmake pkgconfig ];
+  buildInputs = stdenv.lib.optionals withMPI [ mpi ];
+  propagatedBuildInputs = [ python.pkgs.numpy ]
+   ++ stdenv.lib.optionals withMPI [ python.pkgs.mpi4py ];
+
+  enableParallelBuilding = true;
+
+  dontAddPrefix = true;
+  cmakeFlags = [
+       "-DENABLE_MPI=${onOffBool withMPI}"
+       "-DBUILD_CGCMM=${onOffBool components.cgcmm}"
+       "-DBUILD_DEPRECIATED=${onOffBool components.depreciated}"
+       "-DBUILD_HPMC=${onOffBool components.hpmc}"
+       "-DBUILD_MD=${onOffBool components.md}"
+       "-DBUILD_METAL=${onOffBool components.metal}"
+       "-DBUILD_TESTING=${onOffBool components.testing}"
+  ];
+
+  preConfigure = ''
+    # Since we can't expand $out in `cmakeFlags`
+    cmakeFlags="$cmakeFlags -DCMAKE_INSTALL_PREFIX=$out/${python.sitePackages}"
+  '';
+
+  # tests fail but have tested that package runs properly
+  doCheck = false;
+  checkTarget = "test";
+
+  meta = with stdenv.lib; {
+    homepage = http://glotzerlab.engin.umich.edu/hoomd-blue/;
+    description = "HOOMD-blue is a general-purpose particle simulation toolkit";
+    license = licenses.bsdOriginal;
+    platforms = [ "x86_64-linux" ];
+    maintainers = [ maintainers.costrouc ];
+  };
+
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 116226428239..a73b269d1801 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -366,6 +366,10 @@ in {
 
   hdmedians = callPackage ../development/python-modules/hdmedians { };
 
+  hoomd-blue = toPythonModule (callPackage ../development/python-modules/hoomd-blue {
+    inherit python;
+  });
+
   httpsig = callPackage ../development/python-modules/httpsig { };
 
   i3ipc = callPackage ../development/python-modules/i3ipc { };

From 032a2b3907fe3db59d7d7839c395a01140d1a478 Mon Sep 17 00:00:00 2001
From: Patrick Elliott <patrick.d.elliott@gmail.com>
Date: Tue, 30 Oct 2018 19:26:54 +0100
Subject: [PATCH 0144/1129] nodePackages.git-ssb: add node-gyp-build dependency

---
 pkgs/development/node-packages/default-v8.nix | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/pkgs/development/node-packages/default-v8.nix b/pkgs/development/node-packages/default-v8.nix
index 020992c86844..be9aafe47415 100644
--- a/pkgs/development/node-packages/default-v8.nix
+++ b/pkgs/development/node-packages/default-v8.nix
@@ -49,6 +49,10 @@ nodePackages // {
     buildInputs = [ pkgs.phantomjs2 ];
   };
 
+  git-ssb = nodePackages.git-ssb.override {
+    buildInputs = [ nodePackages.node-gyp-build ];
+  };
+
   node-inspector = nodePackages.node-inspector.override {
     buildInputs = [ nodePackages.node-pre-gyp ];
   };

From aa4707fc3449192b961bfd2dfc16b9042df0d7f3 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 12 Oct 2018 15:21:26 -0500
Subject: [PATCH 0145/1129] treewide: use gnu toolchain for avr/arm-embedded

These packages should in theory work with our GCC toolchains, but
there are some definite breakages that need to be tracked down.
Comparing output of these to old gcc-arm-embedded is important.

Affected packages include:

- axolooti
- avrdudess
- opentx
- microscheme
- betaflight
- inav
- blackmagic
- simavr
- gnuk
---
 pkgs/applications/audio/axoloti/default.nix   |  5 +--
 pkgs/applications/misc/avrdudess/default.nix  |  4 +--
 pkgs/applications/misc/opentx/default.nix     |  8 +++--
 .../compilers/microscheme/default.nix         |  7 +----
 pkgs/development/misc/newlib/default.nix      |  5 +--
 .../misc/stm32/betaflight/default.nix         |  7 ++---
 pkgs/development/misc/stm32/inav/default.nix  |  7 ++---
 .../tools/misc/blackmagic/default.nix         |  7 +++--
 pkgs/development/tools/simavr/default.nix     | 14 +++------
 pkgs/misc/gnuk/generic.nix                    |  4 +--
 pkgs/top-level/all-packages.nix               | 31 +++++++++++++++----
 11 files changed, 57 insertions(+), 42 deletions(-)

diff --git a/pkgs/applications/audio/axoloti/default.nix b/pkgs/applications/audio/axoloti/default.nix
index 274233167bd8..ece036687018 100644
--- a/pkgs/applications/audio/axoloti/default.nix
+++ b/pkgs/applications/audio/axoloti/default.nix
@@ -1,5 +1,6 @@
 { stdenv, fetchFromGitHub, fetchurl, makeWrapper, unzip
-, gnumake, gcc-arm-embedded, dfu-util-axoloti, jdk, ant, libfaketime }:
+, gnumake, gcc-arm-embedded, binutils-arm-embedded
+, dfu-util-axoloti, jdk, ant, libfaketime }:
 
 stdenv.mkDerivation rec {
   version = "1.0.12-2";
@@ -20,7 +21,7 @@ stdenv.mkDerivation rec {
     sha256 = "0lb5s8pkj80mqhsy47mmq0lqk34s2a2m3xagzihalvabwd0frhlj";
   };
 
-  buildInputs = [ makeWrapper unzip gcc-arm-embedded dfu-util-axoloti jdk ant libfaketime ];
+  buildInputs = [ makeWrapper unzip gcc-arm-embedded binutils-arm-embedded dfu-util-axoloti jdk ant libfaketime ];
 
   patchPhase = ''
     unzip ${chibios}
diff --git a/pkgs/applications/misc/avrdudess/default.nix b/pkgs/applications/misc/avrdudess/default.nix
index c803eb37ad6f..1144d5152847 100644
--- a/pkgs/applications/misc/avrdudess/default.nix
+++ b/pkgs/applications/misc/avrdudess/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, unzip, mono, avrbinutils, avrgcc, avrdude, gtk2, xdg_utils }:
+{ stdenv, fetchurl, unzip, mono, avrdude, gtk2, xdg_utils }:
 
 stdenv.mkDerivation rec {
   name = "avrdudess-2.2.20140102";
@@ -23,7 +23,7 @@ stdenv.mkDerivation rec {
     export LD_LIBRARY_PATH="${stdenv.lib.makeLibraryPath [gtk2 mono]}"
     # We need PATH from user env for xdg-open to find its tools, which
     # typically depend on the currently running desktop environment.
-    export PATH="${stdenv.lib.makeBinPath [ avrgcc avrbinutils avrdude xdg_utils ]}:\$PATH"
+    export PATH="${stdenv.lib.makeBinPath [ avrdude xdg_utils ]}:\$PATH"
 
     # avrdudess must have its resource files in its current working directory
     cd $out/avrdudess && exec ${mono}/bin/mono "$out/avrdudess/avrdudess.exe" "\$@"
diff --git a/pkgs/applications/misc/opentx/default.nix b/pkgs/applications/misc/opentx/default.nix
index 8a941a719f29..0aecc43d1e53 100644
--- a/pkgs/applications/misc/opentx/default.nix
+++ b/pkgs/applications/misc/opentx/default.nix
@@ -1,5 +1,5 @@
 { stdenv, fetchFromGitHub
-, cmake, gcc-arm-embedded, python
+, cmake, gcc-arm-embedded, binutils-arm-embedded, python
 , qt5, SDL, gmock
 , dfu-util, avrdude
 }:
@@ -21,10 +21,12 @@ in stdenv.mkDerivation {
 
   enableParallelBuilding = true;
 
-  nativeBuildInputs = [ cmake ];
+  nativeBuildInputs = [
+    cmake
+    gcc-arm-embedded binutils-arm-embedded
+  ];
 
   buildInputs = with qt5; [
-    gcc-arm-embedded
     python python.pkgs.pyqt4
     qtbase qtmultimedia qttranslations
     SDL gmock
diff --git a/pkgs/development/compilers/microscheme/default.nix b/pkgs/development/compilers/microscheme/default.nix
index cfee1b0d8639..f15a76243277 100644
--- a/pkgs/development/compilers/microscheme/default.nix
+++ b/pkgs/development/compilers/microscheme/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchzip, vim, avrdude, avrbinutils, avrgcc, avrlibc, makeWrapper }:
+{ stdenv, fetchzip, vim, makeWrapper }:
 
 stdenv.mkDerivation rec {
   name = "microscheme-${version}";
@@ -10,15 +10,10 @@ stdenv.mkDerivation rec {
     sha256 = "1r3ng4pw1s9yy1h5rafra1rq19d3vmb5pzbpcz1913wz22qdd976";
   };
 
-  # Just a guess
-  propagatedBuildInputs = [ avrlibc ];
   buildInputs = [ makeWrapper vim ];
 
   installPhase = ''
     make install PREFIX=$out
-
-    wrapProgram $out/bin/microscheme \
-      --prefix PATH : "${stdenv.lib.makeBinPath [ avrdude avrgcc avrbinutils ]}"
   '';
 
   meta = with stdenv.lib; {
diff --git a/pkgs/development/misc/newlib/default.nix b/pkgs/development/misc/newlib/default.nix
index e26f0f78f210..693cfa093b08 100644
--- a/pkgs/development/misc/newlib/default.nix
+++ b/pkgs/development/misc/newlib/default.nix
@@ -23,12 +23,13 @@ in stdenv.mkDerivation {
     "--disable-nls"
     "--enable-newlib-io-long-long"
     "--enable-newlib-register-fini"
+    "--enable-newlib-retargetable-locking"
   ];
 
   dontDisableStatic = true;
 
   passthru = {
-    incdir = "/${stdenv.hostPlatform.config}/include";
-    libdir = "/${stdenv.hostPlatform.config}/lib";
+    incdir = "/${stdenv.targetPlatform.config}/include";
+    libdir = "/${stdenv.targetPlatform.config}/lib";
   };
 }
diff --git a/pkgs/development/misc/stm32/betaflight/default.nix b/pkgs/development/misc/stm32/betaflight/default.nix
index 0c601c7773cc..21230464e747 100644
--- a/pkgs/development/misc/stm32/betaflight/default.nix
+++ b/pkgs/development/misc/stm32/betaflight/default.nix
@@ -1,5 +1,5 @@
 { stdenv, fetchFromGitHub
-, gcc-arm-embedded, python2
+, gcc-arm-embedded, binutils-arm-embedded, python2
 , skipTargets ? [
   # These targets do not build, for the reasons listed, along with the last version checked.
   # Probably all of the issues with these targets need to be addressed upstream.
@@ -24,8 +24,8 @@ in stdenv.mkDerivation rec {
     sha256 = "1wyp23p876xbfi9z6gm4xn1nwss3myvrjjjq9pd3s0vf5gkclkg5";
   };
 
-  buildInputs = [
-    gcc-arm-embedded
+  nativeBuildInputs = [
+    gcc-arm-embedded binutils-arm-embedded
     python2
   ];
 
@@ -58,7 +58,6 @@ in stdenv.mkDerivation rec {
     homepage = https://github.com/betaflight/betaflight;
     license = licenses.gpl3;
     maintainers = with maintainers; [ elitak ];
-    platforms = [ "i686-linux" "x86_64-linux" ];
   };
 
 }
diff --git a/pkgs/development/misc/stm32/inav/default.nix b/pkgs/development/misc/stm32/inav/default.nix
index cb9cc80d3252..9c35ac2ffce1 100644
--- a/pkgs/development/misc/stm32/inav/default.nix
+++ b/pkgs/development/misc/stm32/inav/default.nix
@@ -1,5 +1,5 @@
 { stdenv, fetchFromGitHub
-, gcc-arm-embedded, ruby
+, gcc-arm-embedded, binutils-arm-embedded, ruby
 }:
 
 let
@@ -17,8 +17,8 @@ in stdenv.mkDerivation rec {
     sha256 = "15zai8qf43b06fmws1sbkmdgip51zp7gkfj7pp9b6gi8giarzq3y";
   };
 
-  buildInputs = [
-    gcc-arm-embedded
+  nativeBuildInputs = [
+    gcc-arm-embedded binutils-arm-embedded
     ruby
   ];
 
@@ -50,7 +50,6 @@ in stdenv.mkDerivation rec {
     homepage = https://inavflight.github.io;
     license = licenses.gpl3;
     maintainers = with maintainers; [ elitak ];
-    platforms = [ "i686-linux" "x86_64-linux" ];
   };
 
 }
diff --git a/pkgs/development/tools/misc/blackmagic/default.nix b/pkgs/development/tools/misc/blackmagic/default.nix
index 2974c653acdd..281463528354 100644
--- a/pkgs/development/tools/misc/blackmagic/default.nix
+++ b/pkgs/development/tools/misc/blackmagic/default.nix
@@ -1,5 +1,5 @@
 { stdenv, lib, fetchFromGitHub
-, gcc-arm-embedded, libftdi
+, gcc-arm-embedded, binutils-arm-embedded, libftdi
 , python, pythonPackages
 }:
 
@@ -17,8 +17,11 @@ stdenv.mkDerivation rec {
     fetchSubmodules = true;
   };
 
+  nativeBuildInputs = [
+    gcc-arm-embedded binutils-arm-embedded
+  ];
+
   buildInputs = [
-    gcc-arm-embedded
     libftdi
     python
     pythonPackages.intelhex
diff --git a/pkgs/development/tools/simavr/default.nix b/pkgs/development/tools/simavr/default.nix
index b009d5ed601b..e28aad40ef47 100644
--- a/pkgs/development/tools/simavr/default.nix
+++ b/pkgs/development/tools/simavr/default.nix
@@ -1,4 +1,5 @@
-{ stdenv, fetchFromGitHub, avrbinutils, avrgcc, avrlibc, libelf, which, git, pkgconfig, freeglut
+{ stdenv, fetchFromGitHub, libelf, which, git, pkgconfig, freeglut
+, avrbinutils, avrgcc, avrlibc
 , libGLU_combined }:
 
 stdenv.mkDerivation rec {
@@ -15,14 +16,10 @@ stdenv.mkDerivation rec {
   # ld: cannot find -lsimavr
   enableParallelBuilding = false;
 
-  preConfigure = ''
-    substituteInPlace Makefile.common --replace "-I../simavr/sim/avr -I../../simavr/sim/avr" \
-    "-I${avrlibc}/avr/include -L${avrlibc}/avr/lib/avr5  -B${avrlibc}/avr/lib -I../simavr/sim/avr -I../../simavr/sim/avr"
-  '';
   buildFlags = "AVR_ROOT=${avrlibc}/avr SIMAVR_VERSION=${version}";
   installFlags = buildFlags + " DESTDIR=$(out)";
 
-  
+
   # Hack to avoid TMPDIR in RPATHs.
   preFixup = ''rm -rf "$(pwd)" && mkdir "$(pwd)" '';
 
@@ -31,8 +28,8 @@ stdenv.mkDerivation rec {
     patchelf --set-rpath "$(patchelf --print-rpath "$target"):$out/lib" "$target"
   '';
 
-  nativeBuildInputs = [ pkgconfig ];
-  buildInputs = [ which git avrbinutils avrgcc avrlibc libelf freeglut libGLU_combined ];
+  nativeBuildInputs = [ which git pkgconfig avrgcc avrbinutils ];
+  buildInputs = [ libelf freeglut libGLU_combined ];
 
   meta = with stdenv.lib; {
     description = "A lean and mean Atmel AVR simulator";
@@ -43,4 +40,3 @@ stdenv.mkDerivation rec {
   };
 
 }
-
diff --git a/pkgs/misc/gnuk/generic.nix b/pkgs/misc/gnuk/generic.nix
index 22aaa2d1cb57..80a4518f3f70 100644
--- a/pkgs/misc/gnuk/generic.nix
+++ b/pkgs/misc/gnuk/generic.nix
@@ -1,4 +1,4 @@
-{ stdenv, gcc-arm-embedded, makeWrapper
+{ stdenv, gcc-arm-embedded, binutils-arm-embedded, makeWrapper
 , python, pythonPackages
 
 # Extra options
@@ -14,7 +14,7 @@ stdenv.mkDerivation {
 
   inherit src;
 
-  nativeBuildInputs = [ gcc-arm-embedded makeWrapper ];
+  nativeBuildInputs = [ gcc-arm-embedded binutils-arm-embedded makeWrapper ];
   buildInputs = [ python ] ++ (with pythonPackages; [ pyusb colorama ]);
 
   configurePhase = ''
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 15f50090576d..cd83ad728b8d 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -830,7 +830,10 @@ with pkgs;
     libssl = openssl;
   };
 
-  axoloti = callPackage ../applications/audio/axoloti { };
+  axoloti = callPackage ../applications/audio/axoloti {
+    gcc-arm-embedded = pkgsCross.arm-embedded.buildPackages.gcc;
+    binutils-arm-embedded = pkgsCross.arm-embedded.buildPackages.binutils;
+  };
   dfu-util-axoloti = callPackage ../applications/audio/axoloti/dfu-util.nix { };
   libusb1-axoloti = callPackage ../applications/audio/axoloti/libusb1.nix {
     inherit (darwin) libobjc;
@@ -7998,7 +8001,10 @@ with pkgs;
 
   avr8burnomat = callPackage ../development/misc/avr8-burn-omat { };
 
-  betaflight = callPackage ../development/misc/stm32/betaflight { };
+  betaflight = callPackage ../development/misc/stm32/betaflight {
+    gcc-arm-embedded = pkgsCross.arm-embedded.buildPackages.gcc;
+    binutils-arm-embedded = pkgsCross.arm-embedded.buildPackages.binutils;
+  };
 
   sourceFromHead = callPackage ../build-support/source-from-head-fun.nix {};
 
@@ -8034,7 +8040,10 @@ with pkgs;
     guile = guile_2_0;
   };
 
-  inav = callPackage ../development/misc/stm32/inav { };
+  inav = callPackage ../development/misc/stm32/inav {
+    gcc-arm-embedded = pkgsCross.arm-embedded.buildPackages.gcc;
+    binutils-arm-embedded = pkgsCross.arm-embedded.buildPackages.binutils;
+  };
 
   pharo-vms = callPackage ../development/pharo/vm { };
   pharo = pharo-vms.multi-vm-wrapper;
@@ -8192,6 +8201,8 @@ with pkgs;
 
   blackmagic = callPackage ../development/tools/misc/blackmagic {
     stdenv = overrideCC stdenv gcc6;
+    gcc-arm-embedded = pkgsCross.arm-embedded.buildPackages.gcc;
+    binutils-arm-embedded = pkgsCross.arm-embedded.buildPackages.binutils;
   };
 
   bloaty = callPackage ../development/tools/bloaty { };
@@ -12206,7 +12217,11 @@ with pkgs;
 
   graphite2 = callPackage ../development/libraries/silgraphite/graphite2.nix {};
 
-  simavr = callPackage ../development/tools/simavr { };
+  simavr = callPackage ../development/tools/simavr {
+    avrgcc = pkgsCross.avr.buildPackages.gcc;
+    avrbinutils = pkgsCross.avr.buildPackages.binutils;
+    avrlibc = pkgsCross.avr.libcCross;
+  };
 
   simgear = callPackage ../development/libraries/simgear { };
 
@@ -18301,7 +18316,10 @@ with pkgs;
 
   opentimestamps-client = python3Packages.callPackage ../tools/misc/opentimestamps-client {};
 
-  opentx = callPackage ../applications/misc/opentx { };
+  opentx = callPackage ../applications/misc/opentx {
+    gcc-arm-embedded = pkgsCross.arm-embedded.buildPackages.gcc;
+    binutils-arm-embedded = pkgsCross.arm-embedded.buildPackages.binutils;
+  };
 
   opera = callPackage ../applications/networking/browsers/opera {};
 
@@ -21982,7 +22000,8 @@ with pkgs;
   gnome-breeze = callPackage ../misc/themes/gnome-breeze { };
 
   gnuk = callPackage ../misc/gnuk {
-    gcc-arm-embedded = gcc-arm-embedded-4_9;
+    gcc-arm-embedded = pkgsCross.arm-embedded.buildPackages.gcc;
+    binutils-arm-embedded = pkgsCross.arm-embedded.buildPackages.binutils;
   };
 
   greybird = callPackage ../misc/themes/greybird { };

From c327df544ae0875ce71b0a82ae7a650a8e34a268 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 19 Oct 2018 11:53:23 -0500
Subject: [PATCH 0146/1129] gcc-arm-embedded: remove

replace with:

- pkgsCross.arm-embedded.buildPackages.gcc
- pkgsCross.arm-embedded.buildPackages.binutils
---
 .../compilers/gcc-arm-embedded/6/default.nix  | 45 -----------------
 .../compilers/gcc-arm-embedded/7/default.nix  | 39 ---------------
 .../compilers/gcc-arm-embedded/default.nix    | 50 -------------------
 pkgs/top-level/all-packages.nix               | 30 -----------
 4 files changed, 164 deletions(-)
 delete mode 100644 pkgs/development/compilers/gcc-arm-embedded/6/default.nix
 delete mode 100644 pkgs/development/compilers/gcc-arm-embedded/7/default.nix
 delete mode 100644 pkgs/development/compilers/gcc-arm-embedded/default.nix

diff --git a/pkgs/development/compilers/gcc-arm-embedded/6/default.nix b/pkgs/development/compilers/gcc-arm-embedded/6/default.nix
deleted file mode 100644
index 945649b29781..000000000000
--- a/pkgs/development/compilers/gcc-arm-embedded/6/default.nix
+++ /dev/null
@@ -1,45 +0,0 @@
-{ stdenv, fetchurl, ncurses5, python27 }:
-
-stdenv.mkDerivation rec {
-  name = "gcc-arm-embedded-${version}";
-  version = "6-2017-q2-update";
-  subdir = "6-2017q2";
-
-  platformString =
-    if stdenv.isLinux then "linux"
-    else if stdenv.isDarwin then "mac"
-    else throw "unsupported platform";
-
-  urlString = "https://developer.arm.com/-/media/Files/downloads/gnu-rm/${subdir}/gcc-arm-none-eabi-${version}-${platformString}.tar.bz2";
-
-  src =
-    if stdenv.isLinux then fetchurl { url=urlString; sha256="1hvwi02mx34al525sngnl0cm7dkmzxfkb1brq9kvbv28wcplp3p6"; }
-    else if stdenv.isDarwin then fetchurl { url=urlString; sha256="0019ylpq4inq7p5gydpmc9m8ni72fz2csrjlqmgx1698998q0c3x"; }
-    else throw "unsupported platform";
-
-  phases = [ "unpackPhase" "installPhase" "fixupPhase" ];
-
-  installPhase = ''
-    mkdir -p $out
-    cp -r * $out
-  '';
-
-  dontPatchELF = true;
-  dontStrip = true;
-
-  preFixup = ''
-    find $out -type f | while read f; do
-      patchelf $f > /dev/null 2>&1 || continue
-      patchelf --set-interpreter $(cat ${stdenv.cc}/nix-support/dynamic-linker) "$f" || true
-      patchelf --set-rpath ${stdenv.lib.makeLibraryPath [ "$out" stdenv.cc.cc ncurses5 python27 ]} "$f" || true
-    done
-  '';
-
-  meta = {
-    description = "Pre-built GNU toolchain from ARM Cortex-M & Cortex-R processors (Cortex-M0/M0+/M3/M4/M7, Cortex-R4/R5/R7/R8)";
-    homepage = https://developer.arm.com/open-source/gnu-toolchain/gnu-rm;
-    license = with stdenv.lib.licenses; [ bsd2 gpl2 gpl3 lgpl21 lgpl3 mit ];
-    maintainers = with stdenv.lib.maintainers; [ vinymeuh ];
-    platforms = with stdenv.lib.platforms; linux ++ darwin;
-  };
-}
diff --git a/pkgs/development/compilers/gcc-arm-embedded/7/default.nix b/pkgs/development/compilers/gcc-arm-embedded/7/default.nix
deleted file mode 100644
index c22683dae03a..000000000000
--- a/pkgs/development/compilers/gcc-arm-embedded/7/default.nix
+++ /dev/null
@@ -1,39 +0,0 @@
-{ stdenv, lib, fetchurl, ncurses5, python27 }:
-
-with lib;
-
-stdenv.mkDerivation rec {
-  name = "gcc-arm-embedded-${version}";
-  version = "7-2018-q2-update";
-  subdir = "7-2018q2";
-
-  urlString = "https://developer.arm.com/-/media/Files/downloads/gnu-rm/${subdir}/gcc-arm-none-eabi-${version}-linux.tar.bz2";
-
-  src = fetchurl { url=urlString; sha256="0sgysp3hfpgrkcbfiwkp0a7ymqs02khfbrjabm52b5z61sgi05xv"; };
-
-  phases = [ "unpackPhase" "installPhase" "fixupPhase" ];
-
-  installPhase = ''
-    mkdir -p $out
-    cp -r * $out
-  '';
-
-  dontPatchELF = true;
-  dontStrip = true;
-
-  preFixup = ''
-    find $out -type f | while read f; do
-      patchelf $f > /dev/null 2>&1 || continue
-      patchelf --set-interpreter $(cat ${stdenv.cc}/nix-support/dynamic-linker) "$f" || true
-      patchelf --set-rpath ${stdenv.lib.makeLibraryPath [ "$out" stdenv.cc.cc ncurses5 python27 ]} "$f" || true
-    done
-  '';
-
-  meta = {
-    description = "Pre-built GNU toolchain from ARM Cortex-M & Cortex-R processors (Cortex-M0/M0+/M3/M4/M7, Cortex-R4/R5/R7/R8)";
-    homepage = https://developer.arm.com/open-source/gnu-toolchain/gnu-rm;
-    license = with licenses; [ bsd2 gpl2 gpl3 lgpl21 lgpl3 mit ];
-    maintainers = with maintainers; [ prusnak ];
-    platforms = platforms.linux;
-  };
-}
diff --git a/pkgs/development/compilers/gcc-arm-embedded/default.nix b/pkgs/development/compilers/gcc-arm-embedded/default.nix
deleted file mode 100644
index 039b5a9ce362..000000000000
--- a/pkgs/development/compilers/gcc-arm-embedded/default.nix
+++ /dev/null
@@ -1,50 +0,0 @@
-{ stdenv, bzip2, patchelf, glibc, gcc, fetchurl, version, releaseType, sha256, ncurses
-, dirName ? null, subdirName ? null }:
-with stdenv.lib;
-let
-  versionParts = splitString "-" version; # 4.7 2013q3 20130916
-  majorVersion = elemAt versionParts 0; # 4.7
-  yearQuarter = elemAt versionParts 1; # 2013q3
-  underscoreVersion = replaceChars ["."] ["_"] version; # 4_7-2013q3-20130916
-  yearQuarterParts = splitString "q" yearQuarter; # 2013 3
-  year = elemAt yearQuarterParts 0; # 2013
-  quarter = elemAt yearQuarterParts 1; # 3
-  dirName_ = if dirName != null then dirName else majorVersion;
-  subdirName_ = if subdirName != null then subdirName
-    else "${majorVersion}-${year}-q${quarter}-${releaseType}"; # 4.7-2013-q3-update
-in
-stdenv.mkDerivation {
-  name = "gcc-arm-embedded-${version}";
-
-  src = fetchurl {
-    url = "https://launchpad.net/gcc-arm-embedded/${dirName_}/${subdirName_}/+download/gcc-arm-none-eabi-${underscoreVersion}-linux.tar.bz2";
-    sha256 = sha256;
-  };
-
-  nativeBuildInputs = [ bzip2 patchelf ];
-
-  dontPatchELF = true;
-
-  phases = "unpackPhase patchPhase installPhase";
-
-  installPhase = ''
-    mkdir -pv $out
-    cp -r ./* $out
-
-    for f in $(find $out); do
-      if [ -f "$f" ] && patchelf "$f" 2> /dev/null; then
-        patchelf --set-interpreter ${getLib glibc}/lib/ld-linux.so.2 \
-                 --set-rpath ${stdenv.lib.makeLibraryPath [ "$out" gcc ncurses ]} \
-                 "$f" || true
-      fi
-    done
-  '';
-
-  meta = with stdenv.lib; {
-    description = "Pre-built GNU toolchain from ARM Cortex-M & Cortex-R processors (Cortex-M0/M0+/M3/M4, Cortex-R4/R5/R7)";
-    homepage = https://launchpad.net/gcc-arm-embedded;
-    license = with licenses; [ bsd2 gpl2 gpl3 lgpl21 lgpl3 mit ];
-    maintainers = [ maintainers.rasendubi ];
-    platforms = platforms.linux;
-  };
-}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index cd83ad728b8d..f130c4705133 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -6839,36 +6839,6 @@ with pkgs;
 
   gcl_2_6_13_pre = callPackage ../development/compilers/gcl/2.6.13-pre.nix { };
 
-  gcc-arm-embedded-4_7 = pkgsi686Linux.callPackage ../development/compilers/gcc-arm-embedded {
-    version = "4.7-2013q3-20130916";
-    releaseType = "update";
-    sha256 = "1bd9bi9q80xn2rpy0rn1vvj70rh15kb7dmah0qs4q2rv78fqj40d";
-    ncurses = pkgsi686Linux.ncurses5;
-  };
-  gcc-arm-embedded-4_8 = pkgsi686Linux.callPackage ../development/compilers/gcc-arm-embedded {
-    version = "4.8-2014q1-20140314";
-    releaseType = "update";
-    sha256 = "ce92859550819d4a3d1a6e2672ea64882b30afa2c08cf67fa8e1d93788c2c577";
-    ncurses = pkgsi686Linux.ncurses5;
-  };
-  gcc-arm-embedded-4_9 = pkgsi686Linux.callPackage ../development/compilers/gcc-arm-embedded {
-    version = "4.9-2015q1-20150306";
-    releaseType = "update";
-    sha256 = "c5e0025b065750bbd76b5357b4fc8606d88afbac9ff55b8a82927b4b96178154";
-    ncurses = pkgsi686Linux.ncurses5;
-  };
-  gcc-arm-embedded-5 = pkgs.pkgsi686Linux.callPackage ../development/compilers/gcc-arm-embedded {
-    dirName = "5.0";
-    subdirName = "5-2016-q2-update";
-    version = "5.4-2016q2-20160622";
-    releaseType = "update";
-    sha256 = "1r0rqbnw7rf94f5bsa3gi8bick4xb7qnp1dkvdjfbvqjvysvc44r";
-    ncurses = pkgsi686Linux.ncurses5;
-  };
-  gcc-arm-embedded-6 = callPackage ../development/compilers/gcc-arm-embedded/6 {};
-  gcc-arm-embedded-7 = callPackage ../development/compilers/gcc-arm-embedded/7 {};
-  gcc-arm-embedded = gcc-arm-embedded-7;
-
   gforth = callPackage ../development/compilers/gforth {};
 
   gtk-server = callPackage ../development/interpreters/gtk-server {};

From dcdf00f18bcdd5938deb7023ebaee45665f6eda2 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 19 Oct 2018 11:55:07 -0500
Subject: [PATCH 0147/1129] mentorToolchains: remove

mentorToolchains.armLinuxGnuEabi is replaced with:

- pkgsCross.pogoplug4.buildPackages.gcc
- pkgsCross.pogoplug4.buildPackages.binutils

and mentorToolchains.armEabi is replaced with:

- pkgsCross.arm-embedded.buildPackages.gcc
- pkgsCross.arm-embedded.buildPackages.binutils

Fixes #39087
---
 pkgs/development/compilers/mentor/default.nix | 80 -------------------
 pkgs/top-level/all-packages.nix               |  4 -
 2 files changed, 84 deletions(-)
 delete mode 100644 pkgs/development/compilers/mentor/default.nix

diff --git a/pkgs/development/compilers/mentor/default.nix b/pkgs/development/compilers/mentor/default.nix
deleted file mode 100644
index 4f09df7f2ea0..000000000000
--- a/pkgs/development/compilers/mentor/default.nix
+++ /dev/null
@@ -1,80 +0,0 @@
-# Sourcery CodeBench Lite toolchain(s) (GCC) from Mentor Graphics
-
-{ stdenv, fetchurl, patchelf, ncurses }:
-
-let
-
-  buildToolchain =
-    { name, src, description }:
-
-    stdenv.mkDerivation rec {
-      inherit name src;
-
-      nativeBuildInputs = [ patchelf ];
-
-      buildCommand = ''
-        # Unpack tarball
-        mkdir -p "$out"
-        tar --strip-components=1 -xjf "$src" -C "$out"
-
-        # Patch binaries
-        interpreter="$(cat "$NIX_CC"/nix-support/dynamic-linker)"
-        for file in "$out"/bin/* "$out"/libexec/gcc/*/*/* "$out"/*/bin/*; do
-            # Skip non-executable files
-            case "$file" in
-              *README.txt) echo "skipping $file"; continue;;
-              *liblto_plugin.so*) echo "skipping $file"; continue;;
-            esac
-
-            # Skip directories
-            test -d "$file" && continue
-
-            echo "patchelf'ing $file"
-            patchelf --set-interpreter "$interpreter" "$file"
-
-            # GDB needs ncurses
-            case "$file" in
-              *gdb) patchelf --set-rpath "${ncurses.out}/lib" "$file";;
-            esac
-        done
-
-        # Manpages
-        mkdir -p "$out/share/man"
-        ln -s "$out"/share/doc/*/man/man1 "$out/share/man/man1"
-        ln -s "$out"/share/doc/*/man/man7 "$out/share/man/man7"
-      '';
-
-      meta = with stdenv.lib; {
-        inherit description;
-        homepage = https://www.mentor.com/embedded-software/sourcery-tools/sourcery-codebench/editions/lite-edition/;
-        license = licenses.gpl3;
-        platforms = platforms.linux;
-        maintainers = [ maintainers.bjornfor ];
-      };
-    };
-
-in
-
-{
-
-  armLinuxGnuEabi = let version = "2013.05-24"; in buildToolchain rec {
-    name = "sourcery-codebench-lite-arm-linux-gnueabi-${version}";
-    description = "Sourcery CodeBench Lite toolchain (GCC) for ARM GNU/Linux, from Mentor Graphics";
-    src = fetchurl {
-      url = "http://sourcery.mentor.com/public/gnu_toolchain/arm-none-linux-gnueabi/arm-${version}-arm-none-linux-gnueabi-i686-pc-linux-gnu.tar.bz2";
-      sha256 = "1xb075ia61c59cya2jl8zp4fvqpfnwkkc5330shvgdlg9981qprr";
-    };
-  };
-
-  armEabi = let version = "2013.05-23"; in buildToolchain rec {
-    name = "sourcery-codebench-lite-arm-eabi-${version}";
-    description = "Sourcery CodeBench Lite toolchain (GCC) for ARM EABI, from Mentor Graphics";
-    src = fetchurl {
-      url = "http://sourcery.mentor.com/public/gnu_toolchain/arm-none-eabi/arm-${version}-arm-none-eabi-i686-pc-linux-gnu.tar.bz2";
-      sha256 = "0nbvdwj3kcv9scx808gniqp0ncdiy2i7afmdvribgkz1lsfin923";
-    };
-  };
-
-  # TODO: Sourcery CodeBench is also available for MIPS, Power, SuperH,
-  # ColdFire (and more).
-}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index f130c4705133..18850ea49cfb 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -7178,10 +7178,6 @@ with pkgs;
 
   manticore = callPackage ../development/compilers/manticore { };
 
-  mentorToolchains = recurseIntoAttrs (
-    pkgsi686Linux.callPackage ../development/compilers/mentor {}
-  );
-
   mercury = callPackage ../development/compilers/mercury { };
 
   microscheme = callPackage ../development/compilers/microscheme { };

From a33d122be67fd393ef5871e94ea0bbcddea4309a Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 19 Oct 2018 11:57:43 -0500
Subject: [PATCH 0148/1129] qmk_firmware: init at 0.6.144

A convenient way to test embedded projects
---
 .../development/misc/qmk_firmware/default.nix | 27 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  7 +++++
 2 files changed, 34 insertions(+)
 create mode 100644 pkgs/development/misc/qmk_firmware/default.nix

diff --git a/pkgs/development/misc/qmk_firmware/default.nix b/pkgs/development/misc/qmk_firmware/default.nix
new file mode 100644
index 000000000000..0a7b4fd9d9a7
--- /dev/null
+++ b/pkgs/development/misc/qmk_firmware/default.nix
@@ -0,0 +1,27 @@
+{ stdenv, fetchFromGitHub
+, avrgcc, avrbinutils
+, gcc-arm-embedded, binutils-arm-embedded
+, teensy-loader-cli, dfu-programmer, dfu-util }:
+
+let version = "0.6.144";
+
+in stdenv.mkDerivation {
+  name = "qmk_firmware-${version}";
+  src = fetchFromGitHub {
+    owner = "qmk";
+    repo = "qmk_firmware";
+    rev = version;
+    sha256 = "0m71f9w32ksqjkrwhqwhr74q5v3pr38bihjyb9ks0k5id0inhrjn";
+    fetchSubmodules = true;
+  };
+  buildFlags = "all:default";
+  NIX_CFLAGS_COMPILE = "-Wno-error";
+  nativeBuildInputs = [
+    avrgcc
+    avrbinutils
+    gcc-arm-embedded
+    teensy-loader-cli
+    dfu-programmer
+    dfu-util
+  ];
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 18850ea49cfb..138e2f5e44a9 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -22817,6 +22817,13 @@ with pkgs;
 
   tsung = callPackage ../applications/networking/tsung {};
 
+  qmk_firmware = callPackage ../development/misc/qmk_firmware {
+    avrgcc = pkgsCross.avr.buildPackages.gcc;
+    avrbinutils = pkgsCross.avr.buildPackages.binutils;
+    gcc-arm-embedded = pkgsCross.arm-embedded.buildPackages.gcc;
+    binutils-arm-embedded = pkgsCross.arm-embedded.buildPackages.binutils;
+  };
+
   newlib = callPackage ../development/misc/newlib { };
   newlibCross = callPackage ../development/misc/newlib {
     stdenv = crossLibcStdenv;

From 991e51a1f65bfe48f0b41784bd0c8c5a9f3bd9e6 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Sat, 20 Oct 2018 15:36:50 -0500
Subject: [PATCH 0149/1129] teensy-loader-cli: build on macos

---
 pkgs/development/tools/misc/teensy-loader-cli/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/tools/misc/teensy-loader-cli/default.nix b/pkgs/development/tools/misc/teensy-loader-cli/default.nix
index d6c5256ca84d..91f2a5c58fc2 100644
--- a/pkgs/development/tools/misc/teensy-loader-cli/default.nix
+++ b/pkgs/development/tools/misc/teensy-loader-cli/default.nix
@@ -10,7 +10,7 @@ stdenv.mkDerivation {
     sha256 = "1a663bv3lvm7bsf2wcaj2c0vpmniak7w5hwix5qgz608bvm2v781";
   };
 
-  buildInputs = [ unzip libusb ];
+  buildInputs = [ libusb ];
 
   installPhase = ''
     install -Dm755 teensy_loader_cli $out/bin/teensy-loader-cli
@@ -21,6 +21,6 @@ stdenv.mkDerivation {
     description = "Firmware uploader for the Teensy microcontroller boards";
     homepage = https://www.pjrc.com/teensy/;
     maintainers = with maintainers; [ the-kenny ];
-    platforms = platforms.linux;
+    platforms = platforms.unix;
   };
 }

From 7a03d2d65f5fcb06ef693a442b806a34ab0803c7 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Mon, 29 Oct 2018 14:38:11 -0500
Subject: [PATCH 0150/1129] axoloti: use nativeBuildInputs correctly

---
 pkgs/applications/audio/axoloti/default.nix | 10 +++++++++-
 1 file changed, 9 insertions(+), 1 deletion(-)

diff --git a/pkgs/applications/audio/axoloti/default.nix b/pkgs/applications/audio/axoloti/default.nix
index ece036687018..3c3198e17348 100644
--- a/pkgs/applications/audio/axoloti/default.nix
+++ b/pkgs/applications/audio/axoloti/default.nix
@@ -21,7 +21,15 @@ stdenv.mkDerivation rec {
     sha256 = "0lb5s8pkj80mqhsy47mmq0lqk34s2a2m3xagzihalvabwd0frhlj";
   };
 
-  buildInputs = [ makeWrapper unzip gcc-arm-embedded binutils-arm-embedded dfu-util-axoloti jdk ant libfaketime ];
+  nativeBuildInputs = [
+    makeWrapper
+    unzip
+    gcc-arm-embedded
+    binutils-arm-embedded
+    dfu-util-axoloti
+    ant
+  ];
+  buildInputs = [jdk libfaketime ];
 
   patchPhase = ''
     unzip ${chibios}

From 22c7bc1e0f4337c1873d4d1dd18424b649e87c2b Mon Sep 17 00:00:00 2001
From: adisbladis <adisbladis@gmail.com>
Date: Tue, 30 Oct 2018 18:32:58 +0000
Subject: [PATCH 0151/1129] firefox-devedition-bin: 64.0b3 -> 64.0b5

---
 .../firefox-bin/devedition_sources.nix        | 794 +++++++++---------
 1 file changed, 397 insertions(+), 397 deletions(-)

diff --git a/pkgs/applications/networking/browsers/firefox-bin/devedition_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/devedition_sources.nix
index 5cbc37fbe5bc..d79bf3fed7e0 100644
--- a/pkgs/applications/networking/browsers/firefox-bin/devedition_sources.nix
+++ b/pkgs/applications/networking/browsers/firefox-bin/devedition_sources.nix
@@ -1,995 +1,995 @@
 {
-  version = "64.0b3";
+  version = "64.0b5";
   sources = [
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+      sha512 = "c56b853b0256ffeb75595755cd0c71e847958cd3e7c753231399e89739b90396effa6ab80016143b18fb49940945ee724ba7f6da2a891c06e26854c02ea7b25e";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/64.0b3/linux-i686/th/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/64.0b5/linux-i686/th/firefox-64.0b5.tar.bz2";
       locale = "th";
       arch = "linux-i686";
-      sha512 = "b0f06d7e3bfbd2d06c2b95cc9afeb1b24f46368daa3f8bf93c9eb5b3d939a5cb20a1ec65310f15a554fbc3640c7495ccd6333e202d01d72b4af667c91da45526";
+      sha512 = "2248c67eadfea27633b2fa60506964adf965c4be82948476bc89c4f7665bbd174bc157e925502fb7ff95e15f6a51e732620a7323f2c498e20c918382c6befde4";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/64.0b3/linux-i686/tr/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/64.0b5/linux-i686/tr/firefox-64.0b5.tar.bz2";
       locale = "tr";
       arch = "linux-i686";
-      sha512 = "e05572dca0d8c7539f433a72c4958a270d7e81bf74c9eb01b7838d0f52b00d0e3a2f399d69ccebc5fcf7041f9993b2ca18c8e078ba1b84b693dfd013460e4e5e";
+      sha512 = "4a33814d0c9cc3be0b589ba4a6755b640804d3bece452acc2d482d4896197822066be77c2eee9cd7cc5d58f00df9d2a97b47db05e4b1c2e1695a02d20ead593f";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/64.0b3/linux-i686/uk/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/64.0b5/linux-i686/uk/firefox-64.0b5.tar.bz2";
       locale = "uk";
       arch = "linux-i686";
-      sha512 = "67b3484136deee0c48c99177e7efd8f9287f278b750da94483df9f0eea80e5abba6bfff021f6a5713df86e74032d29ffe9c712a0d5df874a9dcd554a18938aa4";
+      sha512 = "49361995ba6358733fb9c51780ed1d31e921ed0e3ed27c8e777575c93e723702aa0e47f6ed80ef282b28d5588029ce850a3dd9118a047867466acbc661f6fb1d";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/64.0b3/linux-i686/ur/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/64.0b5/linux-i686/ur/firefox-64.0b5.tar.bz2";
       locale = "ur";
       arch = "linux-i686";
-      sha512 = "9bcf8b221de817429b00d9aa229b49d99a67bab1b39a265adad6f54b543e07d98d715038ad2f17abb4b4c408fc741094f2a05dae3ad77006d683af5b67793854";
+      sha512 = "74b6a3ba8c19acb2dfd2c9f2590dbcebd832f8f1fc06fb805bc7c9ab008e0cf8bbb4a829ce87d807193d8be124c04cf6bfcbd786fa7af1e6d86e20aa8e81f8c9";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/64.0b3/linux-i686/uz/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/64.0b5/linux-i686/uz/firefox-64.0b5.tar.bz2";
       locale = "uz";
       arch = "linux-i686";
-      sha512 = "46a22299c91c7924ec3020221556ba213accf7459c01b9ed42241f92e18e410943bc26a3cbee0e01e268285d30affa240e690b18c9347557dde3924e2c9c0fd5";
+      sha512 = "08ae1db8130aa6112df406e622c27b96758b825e55e988c81e0dbb746691ce69cea4305a88851399a8c988d386702ed968a512d2f763e3452c7ec48c8d832c7f";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/64.0b3/linux-i686/vi/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/64.0b5/linux-i686/vi/firefox-64.0b5.tar.bz2";
       locale = "vi";
       arch = "linux-i686";
-      sha512 = "9fd932091d7e24f64cf6f275b28a02c90d2ba5d1fecf81f2d029b3b3891eb7e22da03932d8b96929c229d46bc28e8905147f4cbc7be0676b2caa85bb57ad5ad6";
+      sha512 = "20bcb0b9986d0360868b8fd8ab3925e2ea031814944255938bb81f57a21881fccfb0f4648bbe689b8828fa8283c7d56c028533770dfe66a4fc11a7d0240afe2d";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/64.0b3/linux-i686/xh/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/64.0b5/linux-i686/xh/firefox-64.0b5.tar.bz2";
       locale = "xh";
       arch = "linux-i686";
-      sha512 = "bb06b8a88a6b4086f3efb5a310c8e87e61d549ad5a0b3f192015676c15b720333011d4ed7829a5165c2703d4a49d3454512f18dfcd27496aaee2580283f78d00";
+      sha512 = "ebb6f05a771b155e43a88b8dcd25d1a77d254900b7eeab8d9a7284a616268f9c7718c4fb6febdf5cbe697407842f3c4d820a057b66d7b6ff7977f66385360004";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/64.0b3/linux-i686/zh-CN/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/64.0b5/linux-i686/zh-CN/firefox-64.0b5.tar.bz2";
       locale = "zh-CN";
       arch = "linux-i686";
-      sha512 = "65a328cd8f87ac7ff2561ea7ce105e1faa33bdd727edc05488a4a5c75f456506373de5fa5d393c5050d7a2a1d600fcf754b80ecf56144f64248e491fed45a194";
+      sha512 = "16c75f1d64ed123752d7c28fd637749fb74f533a809f9b07d4f64dac3dbd1b2cc4141e4639f6f0b57d4e639c5214647ec68c759f2811a2613b54491d83ef0eb2";
     }
-    { url = "http://archive.mozilla.org/pub/devedition/releases/64.0b3/linux-i686/zh-TW/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/devedition/releases/64.0b5/linux-i686/zh-TW/firefox-64.0b5.tar.bz2";
       locale = "zh-TW";
       arch = "linux-i686";
-      sha512 = "4cc0ec59a111a22a81047bbf68c364629bd2376763bac9c361faf33db781c3dfa5a22b896a0cd3b36baaeb935bdf4340d64357496fe12c01c0256e3bdb95751f";
+      sha512 = "99b91025c160cd024b0954249efa7f1f17f8f327185ae77930bb5ecdae741487532e2a3b8a3e34ae3117e3f9c00faab0d3fd29e9f62c94e1d4e48bde6fbe8894";
     }
     ];
 }

From 1756b0fb75f71e5a0e49d81649af9d4529a339d8 Mon Sep 17 00:00:00 2001
From: adisbladis <adisbladis@gmail.com>
Date: Tue, 30 Oct 2018 18:33:04 +0000
Subject: [PATCH 0152/1129] firefox-beta-bin: 64.0b3 -> 64.0b5

---
 .../browsers/firefox-bin/beta_sources.nix     | 794 +++++++++---------
 1 file changed, 397 insertions(+), 397 deletions(-)

diff --git a/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix
index 8c3d7dc7a4a3..2089b1c5e22f 100644
--- a/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix
+++ b/pkgs/applications/networking/browsers/firefox-bin/beta_sources.nix
@@ -1,995 +1,995 @@
 {
-  version = "64.0b3";
+  version = "64.0b5";
   sources = [
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-x86_64/ach/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-x86_64/ach/firefox-64.0b5.tar.bz2";
       locale = "ach";
       arch = "linux-x86_64";
-      sha512 = "6780c222879e7199a430102865afeb7959a98ff05d5dd0b153fb545d0870bbc3fbd51fb51d6a88e18d57ab71e157dc15d2631754437dc8b4d4826d4c57b5ac6a";
+      sha512 = "d57da255abe658e1b5fdb2156fe737d3ecd996320a554d67dc9de038cc6065a9798009de94c0d3530f6cadda044578772d13a6a2647d71e4e52507d4b4ff0b8f";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-x86_64/af/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-x86_64/af/firefox-64.0b5.tar.bz2";
       locale = "af";
       arch = "linux-x86_64";
-      sha512 = "e209850c490e90d64e715b0725bee788d3e10a727253dfdd344ff100893f3e407b10c684a4783be369f35d96c632d0f4809c353370d093daf855dbf7b0486fc6";
+      sha512 = "09f84b78c77d888724c5b66c69d4ca266568b70f861e858a978ebadf592c0fd341f338792ec13a95ac0a8518442ef8db6eb1e3cf34154c9473c739367c2b3c83";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-x86_64/an/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-x86_64/an/firefox-64.0b5.tar.bz2";
       locale = "an";
       arch = "linux-x86_64";
-      sha512 = "b79953646a31876e4db9636ff5a87eef3e84722b33bab3c146a68b64c4e04f02d2b0b58b4c51f5480573d77cfa859415e1b8257d5082c7c01ca8380715a44bec";
+      sha512 = "809d1de6ad2e9b488b8e327ec0e76ba412f63a52c7959ed6770b724cfd295f1d2abb0f2e3a30ad688b3c35b7c67aa7b3bb17c22c55219c136172fdac46bb0a88";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-x86_64/ar/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-x86_64/ar/firefox-64.0b5.tar.bz2";
       locale = "ar";
       arch = "linux-x86_64";
-      sha512 = "fa511dec672dd61a10d57963da29b83847a5b791b37f386675ef6e7bf86ac7c57aa74114c8b67421650f743d4b0bd44cc9be9ab5bd0cb5fa90403c60eeac00db";
+      sha512 = "2d712f71aa187e378ebe7a19288e9ace821485e49787c5c52c9e7bba5d363f026625762e3a3cefea3edee519afb8854068ada726961f1c3722f2dc8dc1fb4a28";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-x86_64/as/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-x86_64/as/firefox-64.0b5.tar.bz2";
       locale = "as";
       arch = "linux-x86_64";
-      sha512 = "f42e5366a7dedf5a113911f1dcfcf8736ff1a0b037059b47f4b0e6021e4a3dd3dfbf1f3afd9873382bdaa1cd8cc535b07a97d5e34eaa3838a98a8bb57f8e8279";
+      sha512 = "fa664a245fa86dff7a49bd03514568373b571681efa6a04a6c45d2168aa50700f0c9a5c0616ac05063cdfc015326d88c703799e2f267db0d62a565a4c6963630";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-x86_64/ast/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-x86_64/ast/firefox-64.0b5.tar.bz2";
       locale = "ast";
       arch = "linux-x86_64";
-      sha512 = "0bf6c6fc480a1d7bf71f2eefeddcfe1fd8ae2c6b40b369e42e18487075f3744b98dadf61a94a10989b9b606256292bf4d016acc2089014ac71ae160028351df0";
+      sha512 = "922e914bf58ee148e7c2abe9390389306b8ca9414f1dd6eed1615b4ef76cb2e872432a81103b3f4ae9a89dae5341d079c7d7ab511af0377a5bfd62405a379957";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-x86_64/az/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-x86_64/az/firefox-64.0b5.tar.bz2";
       locale = "az";
       arch = "linux-x86_64";
-      sha512 = "a287d058701dad9c8f9dcd7b2e9a473471126fab1e1cc0c64eab5dd34025a4d10d74c63d1894f04ce55513c26c1effc3b8078b3d59fd85cb3be9a2b78fe76ae7";
+      sha512 = "fd7a9089521c2fc3a94b026e7ddf795b48020b97acc5b2b0e3a20c0cdacabb51b5711a9ac784a43c506c477ae6fd0e2628774f4239dc8d190cf6f4f555f08076";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-x86_64/be/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-x86_64/be/firefox-64.0b5.tar.bz2";
       locale = "be";
       arch = "linux-x86_64";
-      sha512 = "84c511d0fb20709cbb32a51c2e488102899a73f6c7bf17a8367ceda6dcb838a3052c3e6c92f6cb86b5f881c83398e23ff21aeb4abc6e658ad855809dde1fd5e1";
+      sha512 = "d199ed2918061c39a2cbbd18277812b15b08090aea8e87d740617b46fbd5dcae172bf8fd4b1ef71695171f530db73df05c8eab0f9c60691318d10217dafd8d4c";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-x86_64/bg/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-x86_64/bg/firefox-64.0b5.tar.bz2";
       locale = "bg";
       arch = "linux-x86_64";
-      sha512 = "2905bfc56034a2f6329e8247cdaebe212cec97be86806d95f22eb0fa07e4a3ac94652b52a1e0dae4e725d9941a008f7f923dffd5679bf747ddbd645724100286";
+      sha512 = "c5c36e85090df048fdf18dec0374371139b1948a532c9b5e71109d517ad44bd91c150efcbd9e8a7588a8e4cbcff38f9e67640d4f812aae694720510aad19397e";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-x86_64/bn-BD/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-x86_64/bn-BD/firefox-64.0b5.tar.bz2";
       locale = "bn-BD";
       arch = "linux-x86_64";
-      sha512 = "917f7821a7ba71a8dde46e53468b4e3a9d4a5315c9b4ae9af2ae0bdce56b5a0333c12ba44604dd7159c4ecb61a7d5087fe60d83a3c8e7734cd1a90c4aa29b259";
+      sha512 = "6fa41190dcd2fe25c494e7b259aeca89d9482162221d2244883c945a95a035872810deb0b14acc3fe0f0b29ec1eb6d809e2bf58bec72787d67cfa2722ea6916a";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-x86_64/bn-IN/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-x86_64/bn-IN/firefox-64.0b5.tar.bz2";
       locale = "bn-IN";
       arch = "linux-x86_64";
-      sha512 = "12b515b616cb55dae73bbda075a141dbc96a38a1b2d2ad50b56a48fa58bc3c802251098c61a08105f00affcfc79b71615f18c11d57da92d78d66eb737f8a3c46";
+      sha512 = "3c32deb94bab358c04f09106410c7191f42727fb7414ed64f835c28ad69f7f09cbdb2c040f1cd2c5cd15ed3ba704d1454ae11947bc1e6bff5f6123ed7b0783a4";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-x86_64/br/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-x86_64/br/firefox-64.0b5.tar.bz2";
       locale = "br";
       arch = "linux-x86_64";
-      sha512 = "c6fadf68795b0ceaa5e162ab145da5eb26006e481a9e85923bcb37ef3ea6e6d83a0333d76954f4865c4900b015806a3a3c350839eaca5d6ce56ebb3f5170d97b";
+      sha512 = "d8c21bd0b7c6317dd565f0015e5749cfe668b586b0b05ae8a9e7cec9a9dd8ca0396c610ac4ae864d1e5a06d92c313bdd6b538eb1d8665a5e2982259b62f8ac29";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-x86_64/bs/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-x86_64/bs/firefox-64.0b5.tar.bz2";
       locale = "bs";
       arch = "linux-x86_64";
-      sha512 = "05f3ec07875e53afae59ca9ddbf9873529f2350f1a19a2adf29f205c165afcf13a54a54f2420944665a702aa9d8f738c22519ff9172720d09de6e720dd2db0e7";
+      sha512 = "a09f1a588086f043e3cf2efc3fdcd871e4423602138b7dc5340e02fc628c5b6cefa914d5b892712687b406a8590590dd9c74b3eb3509f2b228b2ca6e5dc7cadd";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-x86_64/ca/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-x86_64/ca/firefox-64.0b5.tar.bz2";
       locale = "ca";
       arch = "linux-x86_64";
-      sha512 = "696d279a802ee758eda15bda7b0b10b11a6f65f5ab5b8068df294a986552211c27437ee825ba7533650b5174a4525510b96cdc39fe244008de0c8c757a95744e";
+      sha512 = "ecd98bae1ef23c69055c8bad7bd4dba9d495679417f260dcf57e201341f418e1596927a9ea0f80ee04c4148442d911c4602769a5fd15e36f17497954c4610f29";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-x86_64/cak/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-x86_64/cak/firefox-64.0b5.tar.bz2";
       locale = "cak";
       arch = "linux-x86_64";
-      sha512 = "828f577737e9c767b349c0413e9fb9db6a271a97121fa1960da885592c29bed060e15cf53ab29f9c181b220a4682814879b2848ff6ccae7d5ecad5626884475b";
+      sha512 = "2843e23ab8023a3d407de510f47f8c4ee2d1b0450672c81ebd01b262965bd26d9deb0b108762d5057ce4519d3f18af82b7b3f9184cad57a94c37134848d04963";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-x86_64/cs/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-x86_64/cs/firefox-64.0b5.tar.bz2";
       locale = "cs";
       arch = "linux-x86_64";
-      sha512 = "61503f4dc11c4d8026939cb5808a2a9ff6d74e2aa8cc474425f6704608dfcf5f8794885bfab2bb9e4aa589ca8c7ba327040f0668ec3436a0be39cee60db9cc71";
+      sha512 = "e1df39ee230751c1cea28a9bd0935ac5c0ae5517774db76a9ad338f79fd5edecc20fdcfd868e90644af898d5a008ced4b4a63367966ae11280b891d50d3c4d6a";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-x86_64/cy/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-x86_64/cy/firefox-64.0b5.tar.bz2";
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+      sha512 = "8e3192d2460671337f3b790b42d5e81cd223214915e6d357a0b3054a241d08c7d0d55346f72b2a314ae724f491cf1aba72e4398a316ca576956eee684c075439";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/ru/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/ru/firefox-64.0b5.tar.bz2";
       locale = "ru";
       arch = "linux-i686";
-      sha512 = "87a098da5a149af265424a6f43d8f992269c92caf2beec002077c0a0a51487ef7cfc1e766b0f4b50c3955d9a47530df51dbf7fca6983c103092e58c035a2f97d";
+      sha512 = "f9d7ef1de1d7f83102d69c1d86945389dff84bda2d956b9493e13b33e33f359d5aa058cbb162e8d636da77358da5d3ccc5a401e1eb4ba60b7f77595feb6d9405";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/si/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/si/firefox-64.0b5.tar.bz2";
       locale = "si";
       arch = "linux-i686";
-      sha512 = "b9f742a394ccdee8c5bd1c4e9ad9e78719a27a4296f7ce8e634e9a8d2123a6d8f36b4aba3b4a1d812740bdf19cc93d08b89623e3566543f8da392b124a53ee89";
+      sha512 = "31c792bdb9a2ac4887313108bd9c1f58dd98841842e991e682168062a6b497d91cfe5079a26e9b2cda520a8a20659320f0e1a93c29b90cb5c7d5ca47fb4e8953";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/sk/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/sk/firefox-64.0b5.tar.bz2";
       locale = "sk";
       arch = "linux-i686";
-      sha512 = "1f6a53e855aaae8eba829915de95aac53fa43d5ad3058c41e099a87c233dceee3ec8f730ae0b7fd0d8c06ef6539cd7bb82890e202c6a5a13a46da3d95f3f361a";
+      sha512 = "247b35c137ef636ad44198c3be9cefc0669a35303d338c7a99eab68dd4e45ca7701c614dcf91fe7ae3aa915deae880dc32c459740ecd4d8faa91ee360794d7ff";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/sl/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/sl/firefox-64.0b5.tar.bz2";
       locale = "sl";
       arch = "linux-i686";
-      sha512 = "08113daa78aab30e470a3b388a9756e794277aa10d5ff8b91842122b76506d2b5a72e87b32462ac84c7286723dfc997b9768eeea3395ee38db7afc9c99a66795";
+      sha512 = "46e44ffe2408ebfef01a5a09a15ec03645f1110363c9c155e8ae36e68c3859bc1caaf5ae38b55ed9d2c0931bc03dd285d07b5203693ef5aacc5089ca4cf5322b";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/son/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/son/firefox-64.0b5.tar.bz2";
       locale = "son";
       arch = "linux-i686";
-      sha512 = "834f193d8fb2a4552bb95e8d2e6aa0e6713f2f5450f19f28a247c544cf86e7d3490b405e1355a956d33611e2d387020a16d040f127e401f57b5cefcafec054c6";
+      sha512 = "284dd43ed39ff77a1acc08e68036a61c966ff8bad1d8911eb2348b7db190b32f07e7252152d2e063045a181eb3d3951d2108646502118292cf077a45d60290e6";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/sq/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/sq/firefox-64.0b5.tar.bz2";
       locale = "sq";
       arch = "linux-i686";
-      sha512 = "313fe1fa9118476fcc417da6191706657c4aa1c2bd8a9058c0b8a908dd99093bd340516aecc400a485abc098ef8b6af4768875bf2901ac7d7c56cd140bc023db";
+      sha512 = "fe47640bce1457f417c8c90070a608a6c480c247e172b496b6d1e614927cbd9bffebf149588db273e906dca1cb7c1c0ca3a5c61e4c91e549177902184ed27832";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/sr/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/sr/firefox-64.0b5.tar.bz2";
       locale = "sr";
       arch = "linux-i686";
-      sha512 = "297b6f0c048c3c7c5754ce0be1f2e166818480b3d3c3c50f568f18e1416b7df5039b726060a11973adfd21c7fb1402dbc82599c2daa177207982e5529ce4031e";
+      sha512 = "eddde48d778a97a5a9b566badbe3e1a8affbced8b8d2c498328bf0f0692ebb878ab80f6be0b6aace380c477ccd928f84a10a0620caabe18341d4fb44b4af73f2";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/sv-SE/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/sv-SE/firefox-64.0b5.tar.bz2";
       locale = "sv-SE";
       arch = "linux-i686";
-      sha512 = "08855eb50d2db6753b42085fa948cc146df27404ce98b33d529066d37c7f6e74e14deaf05a654360d0e47bf78927d3a40df57b8839f0503c18ee93d71d45e971";
+      sha512 = "16afea960446a746ca9d68749b2b474eca804912f238aec81a271705b3374e06165bda0f5ff60cb48ff5533263042b97770caa58b46c01f28ec6c544c7a99cd4";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/ta/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/ta/firefox-64.0b5.tar.bz2";
       locale = "ta";
       arch = "linux-i686";
-      sha512 = "bb8a13b790d97c321a1d8ba17e89ecba580c0a170226ee1c3a9181ede94ab9b974fd4b10f63627c4a0cea854aefa99d6288678a2d0685e39d806bc3ac4d11e69";
+      sha512 = "bdc9325d3e374a26a95ae4cdad850ee21232fe750f20caa435bf5a05aa55db84e75efc5992ba417088f2f89265b04a84dce83c8f1a7f4d4b8c37b8025ab7a601";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/te/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/te/firefox-64.0b5.tar.bz2";
       locale = "te";
       arch = "linux-i686";
-      sha512 = "ae66f62349163cd5a506117e6e823b75ccc55d80cb3227284d5d42a76e7b190b6057a693b98751f5ec7897afca220795e4a74711363173b92c389ca7f4132dd8";
+      sha512 = "00a0714da1b005bc731315b1a66dfd73be3b8bb17b2c02916ee2ab74d5b16ba93c37f95c79626f7bdb254dc9510786463d38264a37fd1e5ecefa01f1daf09d7c";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/th/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/th/firefox-64.0b5.tar.bz2";
       locale = "th";
       arch = "linux-i686";
-      sha512 = "4d652e220438babe1695ff144008eab854dfb529c7fdf6ac2381411dbbe3a926801d0919ceaac50ce30b5141835edebab846ffb2bd44ecb0c735a386bc49adab";
+      sha512 = "bec60214a51569fe579013169f89c428c11e8848de93187ff35405fba581b3dfe57dae7cea740a8173640295fd5f85944366c3ef607af17c396e85f26fa29860";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/tr/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/tr/firefox-64.0b5.tar.bz2";
       locale = "tr";
       arch = "linux-i686";
-      sha512 = "65fc1a5e20e0fcf0c2440df4627e0a79600380fc8aa3638922a7ad10e6d3e0a50bd60d99ec69b4d3040fdb37869cb2141594bef5e052949ae01330166bc8b901";
+      sha512 = "ccc79057928f70cb1d499efb3acea41869d79d8cd6984735bd753f9f138a5b628be9965251b880fda3d107d511404953d954694e16cd53106a243561f2d1bc8b";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/uk/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/uk/firefox-64.0b5.tar.bz2";
       locale = "uk";
       arch = "linux-i686";
-      sha512 = "38702b51bbde6c4d73c78991eff55a3228db540fd3e6f524a1bdfaa7c8092012ebb9cc7621d933dd4fa0bf054edbceca2e7b642bec8e223c8f8dc611f26257b2";
+      sha512 = "05e66edc75c37fc2cd29ce5ad307a999deabfc1efcd4ef2e9f1914efed86cbe2a9c52dbc6ca850547e3accfb70e942a5c7efe5de6753bf3641813a08576abf97";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/ur/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/ur/firefox-64.0b5.tar.bz2";
       locale = "ur";
       arch = "linux-i686";
-      sha512 = "ba13c463bc1b966d7b3d12f1c18eec4fbc6dc9d17a618f5b973afa116950f324c9c224f4807c36e79e5bf27428b47c886ae9c0e86ec57c8f6e48846c51ee9ecf";
+      sha512 = "51ec1522897092a2d91a748d5f684776aa8b7b1ac1cf4f84a36ab955a2ebed17959695877d65185584247c19af4d581004e707ed67d8eeccbd8f7f946173038e";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/uz/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/uz/firefox-64.0b5.tar.bz2";
       locale = "uz";
       arch = "linux-i686";
-      sha512 = "8458f27bef11639229dace0403d3750fbeccd8c7232b42aefd0aac5a9bbe8fb9541523072c6274795637210f889e9b1f86dacb94c3622e62d890a27c4b24e8d1";
+      sha512 = "51570ce758165616e6931f89384d1262622ae8788f39717a8af291b2a0cefda6e6c9d694c04c703eca545d3ad4680c1ecbc84c68e60b28c7cf741eff66e8a8a7";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/vi/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/vi/firefox-64.0b5.tar.bz2";
       locale = "vi";
       arch = "linux-i686";
-      sha512 = "54dd9d15abbdf9ff1d0f48cc1a3dcf4d977e044471066d8bd1dabe953dd150b16b132a5c09378defc1dc179aebb43cd1eed8fee8130ffd1f92fb686c8d78389c";
+      sha512 = "c51b1eada1aee0e985e7eba9040a6b87b36c76e83df53b69d032c7dc3e6bebde23735a8a817a9e267606bc9528dc341ed4675158d222b3507ceec65f0152c202";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/xh/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/xh/firefox-64.0b5.tar.bz2";
       locale = "xh";
       arch = "linux-i686";
-      sha512 = "7c52cc72839ed80704e89a0cf6b35c090c18bfe0bd5f55e5a562bf13163f2f6920cc3d4aa6bfd218c7d264d5b44bdb400570e98747592cedf0e191ad0fd00660";
+      sha512 = "36bc39b2a9fbadc5cb30d7896df384d87c3005b6bb57041c1af681ec6b66af9dcf0b17d6be4aedcfd2aa031b3813ef6d3c4345484321d11339fc3178ec93e6e2";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/zh-CN/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/zh-CN/firefox-64.0b5.tar.bz2";
       locale = "zh-CN";
       arch = "linux-i686";
-      sha512 = "9caf08219db7531732250cd1584d8c914965af4697363c722398e815e1f1fb9c666bb9983d8581b10f84cf03ea7bb215d2560bad653edf1d285a4cb9da29692c";
+      sha512 = "d55e96e8c235f74df987ab589d6921d31faf3527e1eafae75192a26b9fee79bc9d4778a1012341e4be119b314d553703b4105d2bdd2481917218fd3d530100c8";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b3/linux-i686/zh-TW/firefox-64.0b3.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/64.0b5/linux-i686/zh-TW/firefox-64.0b5.tar.bz2";
       locale = "zh-TW";
       arch = "linux-i686";
-      sha512 = "a4224c57508466f4d23248e607d53f5b06b5f498a828d7e6bf81b4aa60a74e91237c53343bcf9c6b12c33df23633d85efd4a65fb5fd8b8fd1d624a335f06e17d";
+      sha512 = "26c3ddf916c45d0f364b23bd113be300e6094d3b29d32df24543690ff53e16168a51979e8bbff262614fbe40ad6d0ddd249f64a63ed8bb03285eb5209818630e";
     }
     ];
 }

From 46f5debb9446d20bf0b478853f34482a36beff77 Mon Sep 17 00:00:00 2001
From: Michael Weiss <dev.primeos@gmail.com>
Date: Tue, 30 Oct 2018 19:33:57 +0100
Subject: [PATCH 0153/1129] signal-desktop: 1.17.1 -> 1.17.2

---
 .../networking/instant-messengers/signal-desktop/default.nix  | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix b/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix
index f123770197fd..3c2109f14c5d 100644
--- a/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix
+++ b/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix
@@ -56,11 +56,11 @@ let
 
 in stdenv.mkDerivation rec {
   name = "signal-desktop-${version}";
-  version = "1.17.1";
+  version = "1.17.2";
 
   src = fetchurl {
     url = "https://updates.signal.org/desktop/apt/pool/main/s/signal-desktop/signal-desktop_${version}_amd64.deb";
-    sha256 = "1cvgjllnbdsr61pz6r4dkbbz58cf69k7p8wriyp1vpzkdi7k5bpl";
+    sha256 = "1ibci07w4dh7r0dkwb3nbqm470rgak2a98rlqf8390rxrinfli3p";
   };
 
   phases = [ "unpackPhase" "installPhase" ];

From 2634d376175d300c1c2572defe8c6d348ad61e20 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Tue, 30 Oct 2018 13:46:01 -0500
Subject: [PATCH 0154/1129] systems/examples: add i686 & x86-64 embedded

Fixes #28160
---
 lib/systems/examples.nix         | 10 ++++++++++
 lib/systems/parse.nix            |  2 ++
 pkgs/top-level/release-cross.nix |  2 ++
 3 files changed, 14 insertions(+)

diff --git a/lib/systems/examples.nix b/lib/systems/examples.nix
index 2bfa9700ccd1..a40c38924245 100644
--- a/lib/systems/examples.nix
+++ b/lib/systems/examples.nix
@@ -118,6 +118,16 @@ rec {
     libc = "newlib";
   };
 
+  i686-embedded = {
+    config = "i686-elf";
+    libc = "newlib";
+  };
+
+  x86_64-embedded = {
+    config = "x86_64-elf";
+    libc = "newlib";
+  };
+
   #
   # Darwin
   #
diff --git a/lib/systems/parse.nix b/lib/systems/parse.nix
index a390a098c60f..db97a5c4b33b 100644
--- a/lib/systems/parse.nix
+++ b/lib/systems/parse.nix
@@ -267,6 +267,8 @@ rec {
         then { cpu = elemAt l 0;                      kernel = "windows";  abi = "cygnus";   }
       else if (elemAt l 1 == "eabi")
         then { cpu = elemAt l 0; vendor = "none"; kernel = "none"; abi = elemAt l 1; }
+      else if (elemAt l 1 == "elf")
+        then { cpu = elemAt l 0; vendor = "none"; kernel = "none"; abi = elemAt l 1; }
       else   { cpu = elemAt l 0;                      kernel = elemAt l 1;                   };
     "3" = # Awkwards hacks, beware!
       if elemAt l 1 == "apple"
diff --git a/pkgs/top-level/release-cross.nix b/pkgs/top-level/release-cross.nix
index 3dec10ad0dbf..755297264625 100644
--- a/pkgs/top-level/release-cross.nix
+++ b/pkgs/top-level/release-cross.nix
@@ -144,6 +144,8 @@ in
   arm-embedded = mapTestOnCross lib.systems.examples.arm-embedded embedded;
   powerpc-embedded = mapTestOnCross lib.systems.examples.powerpc-embedded embedded;
   aarch64-embedded = mapTestOnCross lib.systems.examples.aarch64-embedded embedded;
+  i686-embedded = mapTestOnCross lib.systems.examples.i686-embedded embedded;
+  x86_64-embedded = mapTestOnCross lib.systems.examples.x86_64-embedded embedded;
 
   /* Cross-built bootstrap tools for every supported platform */
   bootstrapTools = let

From c34f5176f1173ac2cdaeed4512a61389d98f9d9f Mon Sep 17 00:00:00 2001
From: John Ericson <John.Ericson@Obsidian.Systems>
Date: Tue, 30 Oct 2018 14:20:24 -0400
Subject: [PATCH 0155/1129] haskell-lib: Factor out shell completion scripts
 helper

---
 pkgs/development/haskell-modules/lib.nix | 15 +++++++++++++++
 pkgs/top-level/all-packages.nix          | 10 +++-------
 2 files changed, 18 insertions(+), 7 deletions(-)

diff --git a/pkgs/development/haskell-modules/lib.nix b/pkgs/development/haskell-modules/lib.nix
index 8dae7c8d72c0..10edf69478b0 100644
--- a/pkgs/development/haskell-modules/lib.nix
+++ b/pkgs/development/haskell-modules/lib.nix
@@ -407,4 +407,19 @@ rec {
 
       in
         builtins.listToAttrs (map toKeyVal haskellPaths);
+
+  # Modify a Haskell package to add completion scripts for the given executable
+  # produced by it. These completion scripts will be picked up automatically if
+  # the resulting derivation is installed, e.g. by `nix-env -i`.
+  addOptparseApplicativeCompletionScripts = exeName: pkg: overrideCabal pkg (drv: {
+    postInstall = (drv.postInstall or "") + ''
+      bashCompDir="$out/share/bash-completion/completions"
+      zshCompDir="$out/share/zsh/vendor-completions"
+      fishCompDir="$out/share/fish/vendor_completions.d"
+      mkdir -p "$bashCompDir" "$zshCompDir" "$fishCompDir"
+      "$out/bin/${exeName}" --bash-completion-script "$out/bin/${exeName}" >"$bashCompDir/${exeName}"
+      "$out/bin/${exeName}" --zsh-completion-script "$out/bin/${exeName}" >"$zshCompDir/_${exeName}"
+      "$out/bin/${exeName}" --fish-completion-script "$out/bin/${exeName}" >"$fishCompDir/${exeName}.fish"
+    '';
+  });
 }
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index a2152113ae57..abd7db6263d5 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -1001,10 +1001,10 @@ with pkgs;
 
   cue2pops = callPackage ../tools/cd-dvd/cue2pops { };
 
-  cabal2nix = haskell.lib.overrideCabal haskellPackages.cabal2nix (drv: {
+  cabal2nix = haskell.lib.overrideCabal (haskell.lib.addOptparseApplicativeCompletionScripts "cabal2nix" haskellPackages.cabal2nix) (drv: {
     isLibrary = false;
     enableSharedExecutables = false;
-    executableToolDepends = [ makeWrapper ];
+    executableToolDepends = (drv.executableToolDepends or []) ++ [ makeWrapper ];
     postInstall = ''
       exe=$out/libexec/${drv.pname}-${drv.version}/${drv.pname}
       install -D $out/bin/${drv.pname} $exe
@@ -1012,11 +1012,7 @@ with pkgs;
       makeWrapper $exe $out/bin/${drv.pname} \
         --prefix PATH ":" "${nix}/bin" \
         --prefix PATH ":" "${nix-prefetch-scripts}/bin"
-      mkdir -p $out/share/{bash-completion/completions,zsh/vendor-completions,fish/completions}
-      $exe --bash-completion-script $exe >$out/share/bash-completion/completions/${drv.pname}
-      $exe --zsh-completion-script $exe >$out/share/zsh/vendor-completions/_${drv.pname}
-      $exe --fish-completion-script $exe >$out/share/fish/completions/${drv.pname}.fish
-    '';
+    '' + (drv.postInstall or "");
   });
 
   stack2nix = with haskell.lib; overrideCabal (justStaticExecutables haskellPackages.stack2nix) (drv: {

From 111d4eb090cdd71b227701842dc67f3bc6dc5f44 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Tue, 23 Oct 2018 23:43:53 +0200
Subject: [PATCH 0156/1129] nixos/slurm: run ctld as user and fix spool dir

* run as user 'slurm' per default instead of root
* add user/group slurm to ids.nix
* fix default location for the state dir of slurmctld:
  (/var/spool -> /var/spool/slurmctld)
* Update release notes with the above changes
---
 nixos/doc/manual/release-notes/rl-1903.xml    | 14 +++++++
 nixos/modules/misc/ids.nix                    |  2 +
 .../services/computing/slurm/slurm.nix        | 38 +++++++++++++++++++
 3 files changed, 54 insertions(+)

diff --git a/nixos/doc/manual/release-notes/rl-1903.xml b/nixos/doc/manual/release-notes/rl-1903.xml
index 9c07184613e4..4f3e632c3777 100644
--- a/nixos/doc/manual/release-notes/rl-1903.xml
+++ b/nixos/doc/manual/release-notes/rl-1903.xml
@@ -152,6 +152,20 @@
      has been renamed to <varname>postgresql_9_6</varname>.
     </para>
    </listitem>
+   <listitem>
+    <para>
+      Slurm introduces the new option
+      <literal>services.slurm.stateSaveLocation</literal>,
+      which is now set to <literal>/var/spool/slurm</literal> by default
+      (instead of <literal>/var/spool</literal>).
+      Make sure to move all files to the new directory or to set the option accordingly.
+    </para>
+    <para>
+      The slurmctld now runs as user <literal>slurm</literal> instead of <literal>root</literal>.
+      If you want to keep slurmctld running as <literal>root</literal>, set
+      <literal>services.slurm.user = root</literal>.
+    </para>
+   </listitem>
   </itemizedlist>
  </section>
 
diff --git a/nixos/modules/misc/ids.nix b/nixos/modules/misc/ids.nix
index 5c30e512a1b3..a32e4fe3f7c8 100644
--- a/nixos/modules/misc/ids.nix
+++ b/nixos/modules/misc/ids.nix
@@ -331,6 +331,7 @@
       zeronet = 304;
       lirc = 305;
       lidarr = 306;
+      slurm = 307;
 
       # When adding a uid, make sure it doesn't match an existing gid. And don't use uids above 399!
 
@@ -622,6 +623,7 @@
       zeronet = 304;
       lirc = 305;
       lidarr = 306;
+      slurm = 307;
 
       # When adding a gid, make sure it doesn't match an existing
       # uid. Users and groups with the same name should have equal
diff --git a/nixos/modules/services/computing/slurm/slurm.nix b/nixos/modules/services/computing/slurm/slurm.nix
index 09174ed39f5e..9dbb6a4d0d93 100644
--- a/nixos/modules/services/computing/slurm/slurm.nix
+++ b/nixos/modules/services/computing/slurm/slurm.nix
@@ -6,9 +6,14 @@ let
 
   cfg = config.services.slurm;
   # configuration file can be generated by http://slurm.schedmd.com/configurator.html
+
+  defaultUser = "slurm";
+
   configFile = pkgs.writeTextDir "slurm.conf"
     ''
       ClusterName=${cfg.clusterName}
+      StateSaveLocation=${cfg.stateSaveLocation}
+      SlurmUser=${cfg.user}
       ${optionalString (cfg.controlMachine != null) ''controlMachine=${cfg.controlMachine}''}
       ${optionalString (cfg.controlAddr != null) ''controlAddr=${cfg.controlAddr}''}
       ${optionalString (cfg.nodeName != null) ''nodeName=${cfg.nodeName}''}
@@ -159,6 +164,25 @@ in
         '';
       };
 
+      stateSaveLocation = mkOption {
+        type = types.str;
+        default = "/var/spool/slurmctld";
+        description = ''
+          Directory into which the Slurm controller, slurmctld, saves its state.
+        '';
+      };
+
+      user = mkOption {
+        type = types.str;
+        default = defaultUser;
+        description = ''
+          Set this option when you want to run the slurmctld daemon
+          as something else than the default slurm user "slurm".
+          Note that the UID of this user needs to be the same
+          on all nodes.
+        '';
+      };
+
       extraConfig = mkOption {
         default = "";
         type = types.lines;
@@ -226,6 +250,15 @@ in
 
     services.munge.enable = mkDefault true;
 
+    # use a static uid as default to ensure it is the same on all nodes
+    users.users.slurm = mkIf (cfg.user == defaultUser) {
+      name = defaultUser;
+      group = "slurm";
+      uid = config.ids.uids.slurm;
+    };
+
+    users.groups.slurm.gid = config.ids.uids.slurm;
+
     systemd.services.slurmd = mkIf (cfg.client.enable) {
       path = with pkgs; [ wrappedSlurm coreutils ]
         ++ lib.optional cfg.enableSrunX11 slurm-spank-x11;
@@ -261,6 +294,11 @@ in
         PIDFile = "/run/slurmctld.pid";
         ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID";
       };
+
+      preStart = ''
+        mkdir -p ${cfg.stateSaveLocation}
+        chown -R ${cfg.user}:slurm ${cfg.stateSaveLocation}
+      '';
     };
 
   };

From 79c9dbfb40d5123f18ed64485265d8bc19209091 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Sat, 15 Sep 2018 13:09:36 +0200
Subject: [PATCH 0157/1129] nixos/slurm: add slurmdbd to module

* New options "services.slurm.dbdserver.[enable,config]"
* Add slurmdbd to test slurm.nix
---
 .../services/computing/slurm/slurm.nix        | 55 ++++++++++++++++++-
 nixos/tests/slurm.nix                         | 51 +++++++++++++++--
 2 files changed, 99 insertions(+), 7 deletions(-)

diff --git a/nixos/modules/services/computing/slurm/slurm.nix b/nixos/modules/services/computing/slurm/slurm.nix
index 9dbb6a4d0d93..77b9c40577a3 100644
--- a/nixos/modules/services/computing/slurm/slurm.nix
+++ b/nixos/modules/services/computing/slurm/slurm.nix
@@ -29,12 +29,19 @@ let
       ${cfg.extraPlugstackConfig}
     '';
 
-
   cgroupConfig = pkgs.writeTextDir "cgroup.conf"
    ''
      ${cfg.extraCgroupConfig}
    '';
 
+  slurmdbdConf = pkgs.writeTextDir "slurmdbd.conf"
+   ''
+     DbdHost=${cfg.dbdserver.dbdHost}
+     SlurmUser=${cfg.user}
+     StorageType=accounting_storage/mysql
+     ${cfg.dbdserver.extraConfig}
+   '';
+
   # slurm expects some additional config files to be
   # in the same directory as slurm.conf
   etcSlurm = pkgs.symlinkJoin {
@@ -65,6 +72,27 @@ in
         };
       };
 
+      dbdserver = {
+        enable = mkEnableOption "SlurmDBD service";
+
+        dbdHost = mkOption {
+          type = types.str;
+          default = config.networking.hostName;
+          description = ''
+            Hostname of the machine where <literal>slurmdbd</literal>
+            is running (i.e. name returned by <literal>hostname -s</literal>).
+          '';
+        };
+
+        extraConfig = mkOption {
+          type = types.lines;
+          default = "";
+          description = ''
+            Extra configuration for <literal>slurmdbd.conf</literal>
+          '';
+        };
+      };
+
       client = {
         enable = mkEnableOption "slurm client daemon";
       };
@@ -208,6 +236,8 @@ in
           used when <literal>procTrackType=proctrack/cgroup</literal>.
         '';
       };
+
+
     };
 
   };
@@ -244,7 +274,10 @@ in
         '';
       };
 
-  in mkIf (cfg.enableStools || cfg.client.enable || cfg.server.enable) {
+  in mkIf ( cfg.enableStools ||
+            cfg.client.enable ||
+            cfg.server.enable ||
+            cfg.dbdserver.enable ) {
 
     environment.systemPackages = [ wrappedSlurm ];
 
@@ -301,6 +334,24 @@ in
       '';
     };
 
+    systemd.services.slurmdbd = mkIf (cfg.dbdserver.enable) {
+      path = with pkgs; [ wrappedSlurm munge coreutils ];
+
+      wantedBy = [ "multi-user.target" ];
+      after = [ "network.target" "munged.service" "mysql.service" ];
+      requires = [ "munged.service" "mysql.service" ];
+
+      # slurm strips the last component off the path
+      environment.SLURM_CONF = "${slurmdbdConf}/slurm.conf";
+
+      serviceConfig = {
+        Type = "forking";
+        ExecStart = "${cfg.package}/bin/slurmdbd";
+        PIDFile = "/run/slurmdbd.pid";
+        ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID";
+      };
+    };
+
   };
 
 }
diff --git a/nixos/tests/slurm.nix b/nixos/tests/slurm.nix
index 60f44c3c8459..54ea1ee7894e 100644
--- a/nixos/tests/slurm.nix
+++ b/nixos/tests/slurm.nix
@@ -1,5 +1,7 @@
 import ./make-test.nix ({ ... }:
-let mungekey = "mungeverryweakkeybuteasytointegratoinatest";
+let
+    mungekey = "mungeverryweakkeybuteasytointegratoinatest";
+
     slurmconfig = {
       controlMachine = "control";
       nodeName = ''
@@ -7,6 +9,10 @@ let mungekey = "mungeverryweakkeybuteasytointegratoinatest";
         NodeName=node[1-3] CPUs=1 State=UNKNOWN
       '';
       partitionName = "debug Nodes=node[1-3] Default=YES MaxTime=INFINITE State=UP";
+      extraConfig = ''
+        AccountingStorageHost=dbd
+        AccountingStorageType=accounting_storage/slurmdbd
+      '';
     };
 in {
   name = "slurm";
@@ -16,7 +22,7 @@ in {
     computeNode =
       { ...}:
       {
-        # TODO slrumd port and slurmctld port should be configurations and
+        # TODO slurmd port and slurmctld port should be configurations and
         # automatically allowed by the  firewall.
         networking.firewall.enable = false;
         services.slurm = {
@@ -43,6 +49,24 @@ in {
         } // slurmconfig;
       };
 
+    dbd =
+      { pkgs, ... } :
+      {
+        networking.firewall.enable = false;
+        services.slurm.dbdserver = {
+          enable = true;
+        };
+        services.mysql = {
+          enable = true;
+          package = pkgs.mysql;
+          ensureDatabases = [ "slurm_acct_db" ];
+          ensureUsers = [{
+            ensurePermissions = { "slurm_acct_db.*" = "ALL PRIVILEGES"; };
+            name = "slurm";
+          }];
+        };
+      };
+
     node1 = computeNode;
     node2 = computeNode;
     node3 = computeNode;
@@ -54,7 +78,7 @@ in {
   startAll;
 
   # Set up authentification across the cluster
-  foreach my $node (($submit,$control,$node1,$node2,$node3))
+  foreach my $node (($submit,$control,$dbd,$node1,$node2,$node3))
   {
     $node->waitForUnit("default.target");
 
@@ -63,10 +87,22 @@ in {
     $node->succeed("chmod 0400 /etc/munge/munge.key");
     $node->succeed("chown munge:munge /etc/munge/munge.key");
     $node->succeed("systemctl restart munged");
-  }
+
+    $node->waitForUnit("munged");
+  };
 
   # Restart the services since they have probably failed due to the munge init
   # failure
+  subtest "can_start_slurmdbd", sub {
+    $dbd->succeed("systemctl restart slurmdbd");
+    $dbd->waitForUnit("slurmdbd.service");
+  };
+
+  # there needs to be an entry for the current
+  # cluster in the database before slurmctld is restarted
+  subtest "add_account", sub {
+    $control->succeed("sacctmgr -i add cluster default");
+  };
 
   subtest "can_start_slurmctld", sub {
     $control->succeed("systemctl restart slurmctld");
@@ -81,12 +117,17 @@ in {
     }
   };
 
-  # Test that the cluster work and can distribute jobs;
+  # Test that the cluster works and can distribute jobs;
 
   subtest "run_distributed_command", sub {
     # Run `hostname` on 3 nodes of the partition (so on all the 3 nodes).
     # The output must contain the 3 different names
     $submit->succeed("srun -N 3 hostname | sort | uniq | wc -l | xargs test 3 -eq");
   };
+
+  subtest "check_slurm_dbd", sub {
+    # find the srun job from above in the database
+    $submit->succeed("sacct | grep hostname");
+  };
   '';
 })

From f51f7534163ec0159c195657dddd5c10443c54a4 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Wed, 24 Oct 2018 00:08:39 +0200
Subject: [PATCH 0158/1129] nixos/slurm: fix obselete string type

---
 nixos/modules/services/computing/slurm/slurm.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nixos/modules/services/computing/slurm/slurm.nix b/nixos/modules/services/computing/slurm/slurm.nix
index 77b9c40577a3..d9a201dc7ed8 100644
--- a/nixos/modules/services/computing/slurm/slurm.nix
+++ b/nixos/modules/services/computing/slurm/slurm.nix
@@ -183,7 +183,7 @@ in
       };
 
       procTrackType = mkOption {
-        type = types.string;
+        type = types.str;
         default = "proctrack/linuxproc";
         description = ''
           Plugin to be used for process tracking on a job step basis.

From d2799d1835fdfc68e2b621beff1fa951f055ae39 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 25 Oct 2018 20:34:17 +0200
Subject: [PATCH 0159/1129] nixos/slurm: node/partitionName option -> list

Make the node and partitionname options lists.
There can be more than paratition or set of nodes.

Add changes to release notes
---
 nixos/doc/manual/release-notes/rl-1903.xml       |  6 ++++++
 nixos/modules/services/computing/slurm/slurm.nix | 16 ++++++++--------
 nixos/tests/slurm.nix                            |  7 ++-----
 3 files changed, 16 insertions(+), 13 deletions(-)

diff --git a/nixos/doc/manual/release-notes/rl-1903.xml b/nixos/doc/manual/release-notes/rl-1903.xml
index 4f3e632c3777..1d9b6ecc0e2e 100644
--- a/nixos/doc/manual/release-notes/rl-1903.xml
+++ b/nixos/doc/manual/release-notes/rl-1903.xml
@@ -165,6 +165,12 @@
       If you want to keep slurmctld running as <literal>root</literal>, set
       <literal>services.slurm.user = root</literal>.
     </para>
+    <para>
+      The options <literal>services.slurm.nodeName</literal> and
+      <literal>services.slurm.partitionName</literal> are now sets of
+      strings to correctly reflect that fact that each of these
+      options can occour more than once in the configuration.
+    </para>
    </listitem>
   </itemizedlist>
  </section>
diff --git a/nixos/modules/services/computing/slurm/slurm.nix b/nixos/modules/services/computing/slurm/slurm.nix
index d9a201dc7ed8..a3f2367dba40 100644
--- a/nixos/modules/services/computing/slurm/slurm.nix
+++ b/nixos/modules/services/computing/slurm/slurm.nix
@@ -16,8 +16,8 @@ let
       SlurmUser=${cfg.user}
       ${optionalString (cfg.controlMachine != null) ''controlMachine=${cfg.controlMachine}''}
       ${optionalString (cfg.controlAddr != null) ''controlAddr=${cfg.controlAddr}''}
-      ${optionalString (cfg.nodeName != null) ''nodeName=${cfg.nodeName}''}
-      ${optionalString (cfg.partitionName != null) ''partitionName=${cfg.partitionName}''}
+      ${toString (map (x: "NodeName=${x}\n") cfg.nodeName)}
+      ${toString (map (x: "PartitionName=${x}\n") cfg.partitionName)}
       PlugStackConfig=${plugStackConfig}
       ProctrackType=${cfg.procTrackType}
       ${cfg.extraConfig}
@@ -149,9 +149,9 @@ in
       };
 
       nodeName = mkOption {
-        type = types.nullOr types.str;
-        default = null;
-        example = "linux[1-32] CPUs=1 State=UNKNOWN";
+        type = types.listOf types.str;
+        default = [];
+        example = literalExample ''[ "linux[1-32] CPUs=1 State=UNKNOWN" ];'';
         description = ''
           Name that SLURM uses to refer to a node (or base partition for BlueGene
           systems). Typically this would be the string that "/bin/hostname -s"
@@ -160,9 +160,9 @@ in
       };
 
       partitionName = mkOption {
-        type = types.nullOr types.str;
-        default = null;
-        example = "debug Nodes=linux[1-32] Default=YES MaxTime=INFINITE State=UP";
+        type = types.listOf types.str;
+        default = [];
+        example = literalExample ''[ "debug Nodes=linux[1-32] Default=YES MaxTime=INFINITE State=UP" ];'';
         description = ''
           Name by which the partition may be referenced. Note that now you have
           to write the partition's parameters after the name.
diff --git a/nixos/tests/slurm.nix b/nixos/tests/slurm.nix
index 54ea1ee7894e..6937a5f0991e 100644
--- a/nixos/tests/slurm.nix
+++ b/nixos/tests/slurm.nix
@@ -4,11 +4,8 @@ let
 
     slurmconfig = {
       controlMachine = "control";
-      nodeName = ''
-        control
-        NodeName=node[1-3] CPUs=1 State=UNKNOWN
-      '';
-      partitionName = "debug Nodes=node[1-3] Default=YES MaxTime=INFINITE State=UP";
+      nodeName = [ "node[1-3] CPUs=1 State=UNKNOWN" ];
+      partitionName = [ "debug Nodes=node[1-3] Default=YES MaxTime=INFINITE State=UP" ];
       extraConfig = ''
         AccountingStorageHost=dbd
         AccountingStorageType=accounting_storage/slurmdbd

From b388beeca3a3a2dd79ba2f2737deb294d4d4748b Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 25 Oct 2018 21:03:23 +0200
Subject: [PATCH 0160/1129] nixos/slurm: add maintainer to module and test

---
 nixos/modules/services/computing/slurm/slurm.nix | 2 ++
 nixos/tests/slurm.nix                            | 4 +++-
 2 files changed, 5 insertions(+), 1 deletion(-)

diff --git a/nixos/modules/services/computing/slurm/slurm.nix b/nixos/modules/services/computing/slurm/slurm.nix
index a3f2367dba40..cd481212db2d 100644
--- a/nixos/modules/services/computing/slurm/slurm.nix
+++ b/nixos/modules/services/computing/slurm/slurm.nix
@@ -55,6 +55,8 @@ in
 
   ###### interface
 
+  meta.maintainers = [ maintainers.markuskowa ];
+
   options = {
 
     services.slurm = {
diff --git a/nixos/tests/slurm.nix b/nixos/tests/slurm.nix
index 6937a5f0991e..7f9c266cbff6 100644
--- a/nixos/tests/slurm.nix
+++ b/nixos/tests/slurm.nix
@@ -1,4 +1,4 @@
-import ./make-test.nix ({ ... }:
+import ./make-test.nix ({ lib, ... }:
 let
     mungekey = "mungeverryweakkeybuteasytointegratoinatest";
 
@@ -14,6 +14,8 @@ let
 in {
   name = "slurm";
 
+  meta.maintainers = [ lib.maintainers.markuskowa ];
+
   nodes =
     let
     computeNode =

From d48cef7d5b8516368b15b4430c473cb63549f20f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Niklas=20Th=C3=B6rne?= <notrupertthorne@gmail.com>
Date: Tue, 30 Oct 2018 20:15:33 +0100
Subject: [PATCH 0161/1129] cppclean: init at 2018-05-12 (#49264)

* cppclean: init at 2018-05-12

* Updated according to review comments
---
 pkgs/development/tools/cppclean/default.nix | 31 +++++++++++++++++++++
 pkgs/top-level/all-packages.nix             |  2 ++
 2 files changed, 33 insertions(+)
 create mode 100644 pkgs/development/tools/cppclean/default.nix

diff --git a/pkgs/development/tools/cppclean/default.nix b/pkgs/development/tools/cppclean/default.nix
new file mode 100644
index 000000000000..96fe07a7799a
--- /dev/null
+++ b/pkgs/development/tools/cppclean/default.nix
@@ -0,0 +1,31 @@
+{ stdenv, lib, fetchFromGitHub, python3Packages }:
+
+with python3Packages;
+
+buildPythonApplication rec {
+  name = "cppclean-unstable-${version}";
+  version = "2018-05-12";
+
+  src = fetchFromGitHub {
+    owner  = "myint";
+    repo   = "cppclean";
+    rev    = "e7da41eca5e1fd2bd1dddd6655e50128bb96dc28";
+    sha256 = "0pymh6r7y19bwcypfkmgwyixrx36pmz338jd83yrjflsbjlriqm4";
+  };
+
+  postUnpack = ''
+    patchShebangs .
+    '';
+
+  checkPhase = ''
+    ./test.bash
+    '';
+
+  meta = with stdenv.lib; {
+    description = "Finds problems in C++ source that slow development of large code bases";
+    homepage    = https://github.com/myint/cppclean;
+    license     = licenses.asl20;
+    maintainers = with maintainers; [ nthorne ];
+    platforms   = platforms.linux;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 5689301d8be2..3f7b6a3ba5ea 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -1179,6 +1179,8 @@ with pkgs;
 
   coursier = callPackage ../development/tools/coursier {};
 
+  cppclean = callPackage ../development/tools/cppclean {};
+
   cri-tools = callPackage ../tools/virtualization/cri-tools {};
 
   crip = callPackage ../applications/audio/crip { };

From fe30cce533f38ff44af8f884a4594cc3155d96d4 Mon Sep 17 00:00:00 2001
From: Carlos Morera de la Chica <carlos@codurance.com>
Date: Tue, 30 Oct 2018 19:33:42 +0000
Subject: [PATCH 0162/1129] beancount: fix build

pytest is now a runtime dependency
---
 .../development/python-modules/beancount/default.nix | 12 +++++-------
 1 file changed, 5 insertions(+), 7 deletions(-)

diff --git a/pkgs/development/python-modules/beancount/default.nix b/pkgs/development/python-modules/beancount/default.nix
index 1a005d9e42d7..e023c721b0e6 100644
--- a/pkgs/development/python-modules/beancount/default.nix
+++ b/pkgs/development/python-modules/beancount/default.nix
@@ -1,7 +1,7 @@
 { stdenv, buildPythonPackage, fetchPypi, isPy3k
 , beautifulsoup4, bottle, chardet, dateutil
 , google_api_python_client, lxml, ply, python_magic
-, nose, requests }:
+, pytest, requests }:
 
 buildPythonPackage rec {
   version = "2.1.3";
@@ -14,13 +14,8 @@ buildPythonPackage rec {
     sha256 = "4b7b0d3633c82ca88d3cb3d31ad2fd2e45a42401cfa94eaa1cb938ffece34f22";
   };
 
-  checkInputs = [ nose ];
-
-  # Automatic tests cannot be run because it needs to import some local modules for tests.
+  # No tests in archive
   doCheck = false;
-  checkPhase = ''
-    nosetests
-  '';
 
   propagatedBuildInputs = [
     beautifulsoup4
@@ -32,6 +27,9 @@ buildPythonPackage rec {
     ply
     python_magic
     requests
+    # pytest really is a runtime dependency
+    # https://bitbucket.org/blais/beancount/commits/554e13057551951e113835196770847c788dd592
+    pytest
   ];
 
   meta = {

From baf070301096f5c6c1765d7e14c05032c4f27df9 Mon Sep 17 00:00:00 2001
From: Benjamin Hipple <bhipple@protonmail.com>
Date: Thu, 4 Oct 2018 21:51:46 -0400
Subject: [PATCH 0163/1129] pythonPackages.pythondaemon: rename to
 pythonPackages.python-daemon

This commit renames the pythondaemon module to match its module name, github
name, and pypi name, which makes it easier to find and reference. In order to
avoid breaking any external users, I've left an alias with a deprecated warning.
---
 doc/languages-frameworks/python.section.md              | 2 +-
 pkgs/applications/networking/cluster/luigi/default.nix  | 2 +-
 pkgs/development/python-modules/coilmq/default.nix      | 4 ++--
 pkgs/development/python-modules/libagent/default.nix    | 4 ++--
 pkgs/development/python-modules/salmon-mail/default.nix | 4 ++--
 pkgs/top-level/python-packages.nix                      | 2 +-
 6 files changed, 9 insertions(+), 9 deletions(-)

diff --git a/doc/languages-frameworks/python.section.md b/doc/languages-frameworks/python.section.md
index b52b79c62d91..e6c8ab37d68a 100644
--- a/doc/languages-frameworks/python.section.md
+++ b/doc/languages-frameworks/python.section.md
@@ -670,7 +670,7 @@ python3Packages.buildPythonApplication rec {
     sha256 = "035w8gqql36zlan0xjrzz9j4lh9hs0qrsgnbyw07qs7lnkvbdv9x";
   };
 
-  propagatedBuildInputs = with python3Packages; [ tornado_4 pythondaemon ];
+  propagatedBuildInputs = with python3Packages; [ tornado_4 python-daemon ];
 
   meta = with lib; {
     ...
diff --git a/pkgs/applications/networking/cluster/luigi/default.nix b/pkgs/applications/networking/cluster/luigi/default.nix
index ced7b9882b9c..35721208a6e2 100644
--- a/pkgs/applications/networking/cluster/luigi/default.nix
+++ b/pkgs/applications/networking/cluster/luigi/default.nix
@@ -14,7 +14,7 @@ python3Packages.buildPythonApplication rec {
     sed -i 's/<2.2.0//' setup.py
   '';
 
-  propagatedBuildInputs = with python3Packages; [ tornado_4 pythondaemon ];
+  propagatedBuildInputs = with python3Packages; [ tornado_4 python-daemon ];
 
   # Requires tox, hadoop, and google cloud
   doCheck = false;
diff --git a/pkgs/development/python-modules/coilmq/default.nix b/pkgs/development/python-modules/coilmq/default.nix
index 11d39e411ce5..90eb1edc2cda 100644
--- a/pkgs/development/python-modules/coilmq/default.nix
+++ b/pkgs/development/python-modules/coilmq/default.nix
@@ -1,5 +1,5 @@
 { stdenv, buildPythonPackage, fetchPypi
-, stompclient, pythondaemon, redis, pid, pytest, six, click, coverage
+, stompclient, python-daemon, redis, pid, pytest, six, click, coverage
 , sqlalchemy }:
 
 buildPythonPackage rec {
@@ -11,7 +11,7 @@ buildPythonPackage rec {
     sha256 = "4cbfeb5ed2459df14902c1380157be6267702b1271682924cd316ccad8a29d1d";
   };
 
-  propagatedBuildInputs = [ stompclient pythondaemon redis pid ];
+  propagatedBuildInputs = [ stompclient python-daemon redis pid ];
   buildInputs = [ pytest six click coverage sqlalchemy ];
 
   # The teste data is not included in the distribution
diff --git a/pkgs/development/python-modules/libagent/default.nix b/pkgs/development/python-modules/libagent/default.nix
index f70d538bb8d0..f93958860409 100644
--- a/pkgs/development/python-modules/libagent/default.nix
+++ b/pkgs/development/python-modules/libagent/default.nix
@@ -1,6 +1,6 @@
 { stdenv, fetchPypi, buildPythonPackage, ed25519, ecdsa , semver, mnemonic,
   unidecode, mock, pytest , backports-shutil-which, ConfigArgParse,
-  pythondaemon, pymsgbox }:
+  python-daemon, pymsgbox }:
 
 buildPythonPackage rec {
   pname = "libagent";
@@ -12,7 +12,7 @@ buildPythonPackage rec {
   };
 
   propagatedBuildInputs = [ unidecode backports-shutil-which ConfigArgParse
-    pythondaemon pymsgbox ecdsa ed25519 mnemonic semver ];
+    python-daemon pymsgbox ecdsa ed25519 mnemonic semver ];
 
   checkInputs = [ mock pytest ];
 
diff --git a/pkgs/development/python-modules/salmon-mail/default.nix b/pkgs/development/python-modules/salmon-mail/default.nix
index b278d26b5dda..9486899c6061 100644
--- a/pkgs/development/python-modules/salmon-mail/default.nix
+++ b/pkgs/development/python-modules/salmon-mail/default.nix
@@ -1,5 +1,5 @@
 { stdenv, buildPythonPackage, fetchPypi, nose, dnspython
-,  chardet, lmtpd, pythondaemon, six, jinja2, mock }:
+,  chardet, lmtpd, python-daemon, six, jinja2, mock }:
 
 buildPythonPackage rec {
   pname = "salmon-mail";
@@ -11,7 +11,7 @@ buildPythonPackage rec {
   };
 
   checkInputs = [ nose jinja2 mock ];
-  propagatedBuildInputs = [ chardet dnspython lmtpd pythondaemon six ];
+  propagatedBuildInputs = [ chardet dnspython lmtpd python-daemon six ];
 
   # The tests use salmon executable installed by salmon itself so we need to add
   # that to PATH
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index b2cff4940c13..d5cc27851719 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -6554,7 +6554,7 @@ in {
       };
     in if isPy3k then py3 else py2;
 
-  pythondaemon = callPackage ../development/python-modules/python-daemon { };
+  python-daemon = callPackage ../development/python-modules/python-daemon { };
 
   sympy = callPackage ../development/python-modules/sympy { };
 

From c3a1c0008baf467886806cd00430de7a9fe89d06 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Wed, 24 Oct 2018 02:12:51 -0700
Subject: [PATCH 0164/1129] python36Packages.nbxmpp: 0.6.6 -> 0.6.8

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-nbxmpp/versions
---
 pkgs/development/python-modules/nbxmpp/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/nbxmpp/default.nix b/pkgs/development/python-modules/nbxmpp/default.nix
index 696796740f8b..888e1de6aa57 100644
--- a/pkgs/development/python-modules/nbxmpp/default.nix
+++ b/pkgs/development/python-modules/nbxmpp/default.nix
@@ -2,7 +2,7 @@
 
 let
   pname = "nbxmpp";
-  version = "0.6.6";
+  version = "0.6.8";
   name = "${pname}-${version}";
 in buildPythonPackage rec {
   inherit pname version;
@@ -11,7 +11,7 @@ in buildPythonPackage rec {
     name = "${name}.tar.bz2";
     url = "https://dev.gajim.org/gajim/python-nbxmpp/repository/archive.tar.bz2?"
         + "ref=${name}";
-    sha256 = "10n7z613p00q15dplsvdrz11s9yq26jy2qack6nd8k7fivfhlcmz";
+    sha256 = "09zrqz01j45kvayfscd66avkrnn237lbjg9li5hjhyw92h6hkkc4";
   };
 
   propagatedBuildInputs = [ pyopenssl ];

From 3f051869844cb24c980a3c495b7886159ff28ce6 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Micha=C5=82=20Janiszewski?= <janisozaur+signed@gmail.com>
Date: Tue, 30 Oct 2018 21:22:43 +0100
Subject: [PATCH 0165/1129] Compare to `None` using identity `is` operator

This is a trivial change that replaces `==` operator with `is` operator, following PEP 8 guideline:

> Comparisons to singletons like None should always be done with is or is not, never the equality operators.

https://legacy.python.org/dev/peps/pep-0008/#programming-recommendations
---
 .../templaterpm/nix-template-rpm.py           | 46 +++++++++----------
 1 file changed, 23 insertions(+), 23 deletions(-)

diff --git a/pkgs/build-support/templaterpm/nix-template-rpm.py b/pkgs/build-support/templaterpm/nix-template-rpm.py
index ec3a619027e7..f39595f89776 100755
--- a/pkgs/build-support/templaterpm/nix-template-rpm.py
+++ b/pkgs/build-support/templaterpm/nix-template-rpm.py
@@ -44,14 +44,14 @@ class SPECTemplate(object):
     self.key = self.getSelfKey()
 
     tmpDir = os.path.join(outputDir, self.rewriteName(self.spec.sourceHeader['name']))
-    if self.translateTable != None:
+    if self.translateTable is not None:
       self.relOutputDir = self.translateTable.path(self.key,tmpDir)
     else:
       self.relOutputDir = tmpDir
 
     self.final_output_dir = os.path.normpath( self.relOutputDir )
 
-    if self.repositoryDir != None:
+    if self.repositoryDir is not None:
       self.potential_repository_dir = os.path.normpath( os.path.join(self.repositoryDir,self.relOutputDir) )
 
 
@@ -59,7 +59,7 @@ class SPECTemplate(object):
   def rewriteCommands(self, string):
     string = string.replace('SPACER_DIR_FOR_REMOVAL/','')
     string = string.replace('SPACER_DIR_FOR_REMOVAL','')
-    string = '\n'.join(map(lambda line: ' '.join(map(lambda x: x.replace('SOURCE_DIR_SPACER/',('${./' if (self.buildRootInclude == None) else '${buildRoot}/usr/share/buildroot/SOURCES/'))+('}' if (self.buildRootInclude == None) else '') if x.startswith('SOURCE_DIR_SPACER/') else x, line.split(' '))), string.split('\n')))
+    string = '\n'.join(map(lambda line: ' '.join(map(lambda x: x.replace('SOURCE_DIR_SPACER/',('${./' if (self.buildRootInclude is None) else '${buildRoot}/usr/share/buildroot/SOURCES/'))+('}' if (self.buildRootInclude is None) else '') if x.startswith('SOURCE_DIR_SPACER/') else x, line.split(' '))), string.split('\n')))
     string = string.replace('\n','\n    ')
     string = string.rstrip()
     return string
@@ -82,7 +82,7 @@ class SPECTemplate(object):
     rewrite = lambda l: ''.join(camelcase(filterDoc(filterDevel(l))))
 
     def filterPackageGroup(target):
-      if target == None:
+      if target is None:
         return [ rewrite(x.split('-')) for x in inputs if (not x.split('-')[0] in self.packageGroups) or (len(x.split('-')) == 1) ]
       elif target in self.packageGroups:
         return [ target + '_' + rewrite(x.split('-')[1:]) for x in inputs if (x.split('-')[0] == target) and (len(x.split('-')) > 1)]
@@ -90,7 +90,7 @@ class SPECTemplate(object):
         raise Exception("Unknown target")
         return []
 
-    if target == None:
+    if target is None:
       packages = filterPackageGroup(None)
       packages.sort()
     elif target in self.packageGroups:
@@ -111,7 +111,7 @@ class SPECTemplate(object):
 
   def getBuildInputs(self,target=None):
     inputs = self.rewriteInputs(target,self.spec.sourceHeader['requires'])
-    if self.translateTable != None:
+    if self.translateTable is not None:
       return map(lambda x: self.translateTable.name(x), inputs)
     else:
       return inputs
@@ -125,7 +125,7 @@ class SPECTemplate(object):
     return key
 
   def getSelf(self):
-    if self.translateTable != None:
+    if self.translateTable is not None:
       return self.translateTable.name(self.key)
     else:
       return self.key
@@ -161,7 +161,7 @@ class SPECTemplate(object):
       facts["sha256"].append(sha256)
 
     patches = [source for (source, _, flag) in self.spec.sources if flag==2]
-    if self.buildRootInclude == None:
+    if self.buildRootInclude is None:
       facts["patches"] = map(lambda x: './'+x, patches)
     else:
       facts["patches"] = map(lambda x: '"${buildRoot}/usr/share/buildroot/SOURCES/'+x+'"', reversed(patches))
@@ -292,7 +292,7 @@ class SPECTemplate(object):
     if not os.path.exists(self.final_output_dir):
       os.makedirs(self.final_output_dir)
 
-    if self.inputDir != None:
+    if self.inputDir is not None:
       self.copySources(self.inputDir, self.final_output_dir)
       self.copyPatches(self.inputDir, self.final_output_dir)
 
@@ -334,19 +334,19 @@ class NixTemplate(object):
           url = re.match(r'^\s*url\s*=\s*"?(.*?)"?\s*;\s*$', line)
           sha256 = re.match(r'^\s*sha256\s*=\s*"(.*?)"\s*;\s*$', line)
           patches = re.match(r'^\s*patches\s*=\s*(\[.*?\])\s*;\s*$', line)
-          if name != None and self.original["name"] == None:
+          if name is not None and self.original["name"] is None:
               self.original["name"] = name.group(1)
               self.matchedLines[n] = "name"
-          if version != None and self.original["version"] == None:
+          if version is not None and self.original["version"] is None:
               self.original["version"] = version.group(1)
               self.matchedLines[n] = "version"
-          if url != None and self.original["url"] == None:
+          if url is not None and self.original["url"] is None:
               self.original["url"] = url.group(1)
               self.matchedLines[n] = "url"
-          if sha256 != None and self.original["sha256"] == None:
+          if sha256 is not None and self.original["sha256"] is None:
               self.original["sha256"] = sha256.group(1)
               self.matchedLines[n] = "sha256"
-          if patches != None and self.original["patches"] == None:
+          if patches is not None and self.original["patches"] is None:
               self.original["patches"] = patches.group(1)
               self.matchedLines[n] = "patches"
 
@@ -355,7 +355,7 @@ class NixTemplate(object):
     nixTemplateFile = open(os.path.normpath(self.nixfile),'r')
     nixOutFile = open(os.path.normpath(nixOut),'w')
     for (n,line) in enumerate(nixTemplateFile):
-      if self.matchedLines.has_key(n) and self.update[self.matchedLines[n]] != None:
+      if self.matchedLines.has_key(n) and self.update[self.matchedLines[n]] is not None:
         nixOutFile.write(line.replace(self.original[self.matchedLines[n]], self.update[self.matchedLines[n]], 1))
       else:
         nixOutFile.write(line)
@@ -383,14 +383,14 @@ class TranslationTable(object):
 
   def update(self, key, path, name=None):
     self.tablePath[key] = path
-    if name != None:
+    if name is not None:
       self.tableName[key] = name
 
   def readTable(self, tableFile):
     with file(tableFile, 'r') as infile:
       for line in infile:
         match = re.match(r'^(.+?)\s+(.+?)\s+(.+?)\s*$', line)
-        if match != None:
+        if match is not None:
           if not self.tablePath.has_key(match.group(1)):
             self.tablePath[match.group(1)] = match.group(2)
           if not self.tableName.has_key(match.group(1)):
@@ -449,7 +449,7 @@ if __name__ == "__main__":
     nameMap = {}
 
     newTable = TranslationTable()
-    if args.translate != None:
+    if args.translate is not None:
       table = TranslationTable()
       table.readTable(args.translate)
       newTable.readTable(args.translate)
@@ -461,7 +461,7 @@ if __name__ == "__main__":
         sys.stderr.write("INFO: generate nix file from: %s\n" % specPath)
 
         spec = SPECTemplate(specPath, args.output, args.inputSources, args.buildRoot, table, args.repository, allPackagesDir, args.maintainer)
-        if args.repository != None:
+        if args.repository is not None:
           if os.path.exists(os.path.join(spec.potential_repository_dir,'default.nix')):
             nixTemplate = NixTemplate(os.path.join(spec.potential_repository_dir,'default.nix'))
             nixTemplate.loadUpdate(spec.facts)
@@ -470,12 +470,12 @@ if __name__ == "__main__":
             nixTemplate.generateUpdated(os.path.join(spec.final_output_dir,'default.nix'))
           else:
             sys.stderr.write("WARNING: Repository does not contain template: %s\n" % os.path.join(spec.potential_repository_dir,'default.nix'))
-            if args.buildRoot == None:
+            if args.buildRoot is None:
               spec.generateCombined()
             else:
               buildRootContent[spec.key] = spec.generateSplit()
         else:
-          if args.buildRoot == None:
+          if args.buildRoot is None:
             spec.generateCombined()
           else:
             buildRootContent[spec.key] = spec.generateSplit()
@@ -486,7 +486,7 @@ if __name__ == "__main__":
       except Exception, e:
         sys.stderr.write("ERROR: %s failed with:\n%s\n%s\n" % (specPath,e.message,traceback.format_exc()))
 
-    if args.translateOut != None:
+    if args.translateOut is not None:
       if not os.path.exists(os.path.dirname(os.path.normpath(args.translateOut))):
         os.makedirs(os.path.dirname(os.path.normpath(args.translateOut)))
       newTable.writeTable(args.translateOut)
@@ -502,7 +502,7 @@ if __name__ == "__main__":
     allPackagesFile.write( '\n\n'.join(map(lambda x: x.callPackage(), map(lambda x: nameMap[x], sortedSpecs))) )
     allPackagesFile.close()
 
-    if args.buildRoot != None:
+    if args.buildRoot is not None:
       buildRootFilename = os.path.normpath( args.buildRoot )
       if not os.path.exists(os.path.dirname(buildRootFilename)):
         os.makedirs(os.path.dirname(buildRootFilename))

From 0a24919923ca4d2a6fc995aa06c3c4ee27b2b318 Mon Sep 17 00:00:00 2001
From: Vincent Laporte <Vincent.Laporte@gmail.com>
Date: Thu, 4 Oct 2018 16:08:05 +0000
Subject: [PATCH 0166/1129] ocamlPackages_latest.ocaml: 4.07.0 -> 4.07.1

---
 pkgs/development/compilers/ocaml/4.07.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/compilers/ocaml/4.07.nix b/pkgs/development/compilers/ocaml/4.07.nix
index 19b9626f4e8f..c1952f30ba68 100644
--- a/pkgs/development/compilers/ocaml/4.07.nix
+++ b/pkgs/development/compilers/ocaml/4.07.nix
@@ -1,8 +1,8 @@
 import ./generic.nix {
   major_version = "4";
   minor_version = "07";
-  patch_version = "0";
-  sha256 = "03wzkzv6w4rdiiva20g5amz0n4x75swpjl8d80468p6zm8hgfnzl";
+  patch_version = "1";
+  sha256 = "1f07hgj5k45cylj1q3k5mk8yi02cwzx849b1fwnwia8xlcfqpr6z";
 
   # If the executable is stripped it does not work
   dontStrip = true;

From 29080af27f67e461ab589b4358bce6e346968352 Mon Sep 17 00:00:00 2001
From: Ales Huzik <me@aguzik.net>
Date: Wed, 24 Oct 2018 16:53:53 +1100
Subject: [PATCH 0167/1129] perlPackages.Po4a: fix install paths

---
 pkgs/top-level/perl-packages.nix | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index c68e15aeb961..374644587913 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -12482,7 +12482,8 @@ let
       export PERL_MB_OPT="--install_base=$out --prefix=$out"
       substituteInPlace Po4aBuilder.pm --replace "\$self->install_sets(\$self->installdirs)->{'bindoc'}" "'$out/share/man/man1'"
     '';
-    buildPhase = "perl Build.PL --install_base=$out; ./Build build";
+
+    buildPhase = "perl Build.PL --install_base=$out --install_path=\"lib=$out/${perl.libPrefix}\"; ./Build build";
     installPhase = "./Build install";
     checkPhase = ''
       export SGML_CATALOG_FILES=${pkgs.docbook_sgml_dtd_41}/sgml/dtd/docbook-4.1/docbook.cat

From 6d34e36ed7a95cce877bd9ee51e6119bf098a413 Mon Sep 17 00:00:00 2001
From: Ales Huzik <me@aguzik.net>
Date: Wed, 24 Oct 2018 16:54:18 +1100
Subject: [PATCH 0168/1129] modem-manager-gui: init at 0.0.19.1

---
 maintainers/maintainer-list.nix               |  5 ++
 .../networking/modem-manager-gui/default.nix  | 50 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 3 files changed, 57 insertions(+)
 create mode 100644 pkgs/applications/networking/modem-manager-gui/default.nix

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index a9116f411767..62c62ac51234 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -143,6 +143,11 @@
     github = "ahmedtd";
     name = "Taahir Ahmed";
   };
+  ahuzik = {
+    email = "ales.guzik@gmail.com";
+    github = "alesguzik";
+    name = "Ales Huzik";
+  };
   aij = {
     email = "aij+git@mrph.org";
     github = "aij";
diff --git a/pkgs/applications/networking/modem-manager-gui/default.nix b/pkgs/applications/networking/modem-manager-gui/default.nix
new file mode 100644
index 000000000000..ca8a4d0fb0cb
--- /dev/null
+++ b/pkgs/applications/networking/modem-manager-gui/default.nix
@@ -0,0 +1,50 @@
+{ stdenv, buildEnv, pkgconfig, python3, fetchhg, gtk3, glib, gdbm, gtkspell3, itstool, libappindicator-gtk3, perlPackages, glibcLocales, meson, ninja }:
+
+stdenv.mkDerivation rec {
+  name = "modem-manager-gui-${version}";
+  version = "0.0.19.1";
+
+  src = fetchhg {
+    url = https://linuxonly@bitbucket.org/linuxonly/modem-manager-gui;
+    rev = "version ${version}";
+    sha256 = "11iibh36567814h2bz41sa1072b86p1l13xyj670pwkh9k8kw8fd";
+  };
+
+  LC_ALL = "en_US.utf-8";
+
+  nativeBuildInputs = [
+    pkgconfig
+    python3
+    perlPackages.Po4a
+    itstool
+    glibcLocales
+    meson
+    ninja
+  ];
+
+  buildInputs = [
+    gtk3
+    glib
+    gdbm
+    gtkspell3
+    libappindicator-gtk3
+  ];
+
+  postPatch = ''
+    patchShebangs man/manhelper.py
+  '';
+
+  meta = with stdenv.lib; {
+    description = "An app to send/receive SMS, make USSD requests, control mobile data usage and more";
+    longDescription = ''
+      A simple GTK+ based GUI compatible with Modem manager, Wader and oFono
+      system services able to control EDGE/3G/4G broadband modem specific
+      functions. You can check balance of your SIM card, send or receive SMS
+      messages, control mobile traffic consumption and more.
+    '';
+    homepage = https://linuxonly.ru/page/modem-manager-gui;
+    license = licenses.gpl3;
+    maintainers = with maintainers; [ ahuzik ];
+    platforms = platforms.linux;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 2a32f95b1a16..68ce50825210 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -4154,6 +4154,8 @@ with pkgs;
 
   modemmanager = callPackage ../tools/networking/modem-manager {};
 
+  modem-manager-gui = callPackage ../applications/networking/modem-manager-gui {};
+
   modsecurity_standalone = callPackage ../tools/security/modsecurity { };
 
   molly-guard = callPackage ../os-specific/linux/molly-guard { };

From f8ef8bf469464391fdf1cd041287fd32d8a210ac Mon Sep 17 00:00:00 2001
From: Edmund Wu <22758444+eadwu@users.noreply.github.com>
Date: Tue, 30 Oct 2018 17:18:05 -0400
Subject: [PATCH 0169/1129] vscode-extensions.ms-vscode.cpptools: use mono 5
 (#49489)

---
 pkgs/misc/vscode-extensions/cpptools/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/misc/vscode-extensions/cpptools/default.nix b/pkgs/misc/vscode-extensions/cpptools/default.nix
index 55e126d64a5d..539d03d66fe1 100644
--- a/pkgs/misc/vscode-extensions/cpptools/default.nix
+++ b/pkgs/misc/vscode-extensions/cpptools/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchzip, vscode-utils, jq, mono46, clang-tools, writeScript
+{ stdenv, fetchzip, vscode-utils, jq, mono, clang-tools, writeScript
 , gdbUseFixed ? true, gdb # The gdb default setting will be fixed to specified. Use version from `PATH` otherwise.
 }:
 
@@ -59,7 +59,7 @@ let
           export PATH=''${PATH}''${PATH:+:}${gdb}/bin
         ''
         else ""}
-    ${mono46}/bin/mono $BIN_DIR/bin/OpenDebugAD7.exe $*
+    ${mono}/bin/mono $BIN_DIR/bin/OpenDebugAD7.exe $*
   '';
 in
 

From 1b4e3103bf5c2f298e72ea19a541c513071c123b Mon Sep 17 00:00:00 2001
From: Eric Wolf <ericwolf42@gmail.com>
Date: Tue, 30 Oct 2018 22:18:59 +0100
Subject: [PATCH 0170/1129] nixos/ddclient: fix #49258

---
 nixos/modules/rename.nix | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/nixos/modules/rename.nix b/nixos/modules/rename.nix
index eb74b9bcac12..aa2b5c0b2dfb 100644
--- a/nixos/modules/rename.nix
+++ b/nixos/modules/rename.nix
@@ -28,7 +28,10 @@ with lib;
       (config:
         let enabled = getAttrFromPath [ "services" "printing" "gutenprint" ] config;
         in if enabled then [ pkgs.gutenprint ] else [ ]))
-    (mkRenamedOptionModule [ "services" "ddclient" "domain" ] [ "services" "ddclient" "domains" ])
+    (mkChangedOptionModule [ "services" "ddclient" "domain" ] [ "services" "ddclient" "domains" ]
+      (config:
+        let value = getAttrFromPath [ "services" "ddclient" "domain" ] config;
+        in if value != "" then [ value ] else []))
     (mkRemovedOptionModule [ "services" "ddclient" "homeDir" ] "")
     (mkRenamedOptionModule [ "services" "elasticsearch" "host" ] [ "services" "elasticsearch" "listenAddress" ])
     (mkRenamedOptionModule [ "services" "graphite" "api" "host" ] [ "services" "graphite" "api" "listenAddress" ])

From 4c8a198f12ed3131615e725c59349b04b8ed18a3 Mon Sep 17 00:00:00 2001
From: Robin Gloster <mail@glob.in>
Date: Tue, 30 Oct 2018 22:26:43 +0100
Subject: [PATCH 0171/1129] tests/docs: remove remnants of old allowPing
 default (#49198)

This has been defaulting to true since 16.03, we don't need this code
anymore, also the note in the documentation has been obsolete for quite
a while.
---
 nixos/doc/manual/configuration/firewall.xml   | 9 ---------
 nixos/tests/ceph.nix                          | 7 +++----
 nixos/tests/cjdns.nix                         | 3 ---
 nixos/tests/containers-bridge.nix             | 1 -
 nixos/tests/containers-extra_veth.nix         | 1 -
 nixos/tests/containers-ipv4.nix               | 1 -
 nixos/tests/containers-ipv6.nix               | 1 -
 nixos/tests/containers-portforward.nix        | 1 -
 nixos/tests/containers-restart_networking.nix | 1 -
 nixos/tests/nat.nix                           | 2 --
 nixos/tests/networking.nix                    | 9 ---------
 nixos/tests/quagga.nix                        | 1 -
 12 files changed, 3 insertions(+), 34 deletions(-)

diff --git a/nixos/doc/manual/configuration/firewall.xml b/nixos/doc/manual/configuration/firewall.xml
index b66adcedce6e..47a19ac82c0f 100644
--- a/nixos/doc/manual/configuration/firewall.xml
+++ b/nixos/doc/manual/configuration/firewall.xml
@@ -34,13 +34,4 @@
   Similarly, UDP port ranges can be opened through
   <xref linkend="opt-networking.firewall.allowedUDPPortRanges"/>.
  </para>
-
- <para>
-  Also of interest is
-<programlisting>
-<xref linkend="opt-networking.firewall.allowPing"/> = true;
-</programlisting>
-  to allow the machine to respond to ping requests. (ICMPv6 pings are always
-  allowed.)
- </para>
 </section>
diff --git a/nixos/tests/ceph.nix b/nixos/tests/ceph.nix
index dd45f0157b01..7408029c460e 100644
--- a/nixos/tests/ceph.nix
+++ b/nixos/tests/ceph.nix
@@ -10,9 +10,8 @@ import ./make-test.nix ({pkgs, ...}: rec {
         emptyDiskImages = [ 20480 20480 ];
         vlans = [ 1 ];
       };
-      
+
       networking = {
-        firewall.allowPing = true;
         useDHCP = false;
         interfaces.eth1.ipv4.addresses = pkgs.lib.mkOverride 0 [
           { address = "192.168.1.1"; prefixLength = 24; }
@@ -54,7 +53,7 @@ import ./make-test.nix ({pkgs, ...}: rec {
       };
     };
   };
-  
+
   testScript = { ... }: ''
     startAll;
 
@@ -83,7 +82,7 @@ import ./make-test.nix ({pkgs, ...}: rec {
 
     # Can't check ceph status until a mon is up
     $aio->succeed("ceph -s | grep 'mon: 1 daemons'");
-          
+
     # Start the ceph-mgr daemon, it has no deps and hardly any setup
     $aio->mustSucceed(
       "ceph auth get-or-create mgr.aio mon 'allow profile mgr' osd 'allow *' mds 'allow *' > /var/lib/ceph/mgr/ceph-aio/keyring",
diff --git a/nixos/tests/cjdns.nix b/nixos/tests/cjdns.nix
index ab5f8e0bcf3e..e03bb9882540 100644
--- a/nixos/tests/cjdns.nix
+++ b/nixos/tests/cjdns.nix
@@ -13,9 +13,6 @@ let
 
       # CJDNS output is incompatible with the XML log.
       systemd.services.cjdns.serviceConfig.StandardOutput = "null";
-      #networking.firewall.enable = true;
-      networking.firewall.allowPing = true;
-      #networking.firewall.rejectPackets = true;
     };
 
 in
diff --git a/nixos/tests/containers-bridge.nix b/nixos/tests/containers-bridge.nix
index bd8bd5dee9c8..777cf9a7e7f9 100644
--- a/nixos/tests/containers-bridge.nix
+++ b/nixos/tests/containers-bridge.nix
@@ -42,7 +42,6 @@ import ./make-test.nix ({ pkgs, ...} : {
             { services.httpd.enable = true;
               services.httpd.adminAddr = "foo@example.org";
               networking.firewall.allowedTCPPorts = [ 80 ];
-              networking.firewall.allowPing = true;
             };
         };
 
diff --git a/nixos/tests/containers-extra_veth.nix b/nixos/tests/containers-extra_veth.nix
index 8f874b3585dc..b4c48afe48ba 100644
--- a/nixos/tests/containers-extra_veth.nix
+++ b/nixos/tests/containers-extra_veth.nix
@@ -43,7 +43,6 @@ import ./make-test.nix ({ pkgs, ...} : {
           config =
             {
               networking.firewall.allowedTCPPorts = [ 80 ];
-              networking.firewall.allowPing = true;
             };
         };
 
diff --git a/nixos/tests/containers-ipv4.nix b/nixos/tests/containers-ipv4.nix
index 4affe3d9d56d..5f83a33b1079 100644
--- a/nixos/tests/containers-ipv4.nix
+++ b/nixos/tests/containers-ipv4.nix
@@ -20,7 +20,6 @@ import ./make-test.nix ({ pkgs, ...} : {
             { services.httpd.enable = true;
               services.httpd.adminAddr = "foo@example.org";
               networking.firewall.allowedTCPPorts = [ 80 ];
-              networking.firewall.allowPing = true;
               system.stateVersion = "18.03";
             };
         };
diff --git a/nixos/tests/containers-ipv6.nix b/nixos/tests/containers-ipv6.nix
index 7db389a18e72..5866e51b731d 100644
--- a/nixos/tests/containers-ipv6.nix
+++ b/nixos/tests/containers-ipv6.nix
@@ -25,7 +25,6 @@ import ./make-test.nix ({ pkgs, ...} : {
             { services.httpd.enable = true;
               services.httpd.adminAddr = "foo@example.org";
               networking.firewall.allowedTCPPorts = [ 80 ];
-              networking.firewall.allowPing = true;
             };
         };
 
diff --git a/nixos/tests/containers-portforward.nix b/nixos/tests/containers-portforward.nix
index be83f82445ed..d2dda926fc0e 100644
--- a/nixos/tests/containers-portforward.nix
+++ b/nixos/tests/containers-portforward.nix
@@ -28,7 +28,6 @@ import ./make-test.nix ({ pkgs, ...} : {
             { services.httpd.enable = true;
               services.httpd.adminAddr = "foo@example.org";
               networking.firewall.allowedTCPPorts = [ 80 ];
-              networking.firewall.allowPing = true;
             };
         };
 
diff --git a/nixos/tests/containers-restart_networking.nix b/nixos/tests/containers-restart_networking.nix
index aeb0a6e68e21..0fb3b591e9f9 100644
--- a/nixos/tests/containers-restart_networking.nix
+++ b/nixos/tests/containers-restart_networking.nix
@@ -10,7 +10,6 @@ let
       hostBridge = "br0";
       config = {
         networking.firewall.enable = false;
-        networking.firewall.allowPing = true;
         networking.interfaces.eth0.ipv4.addresses = [
           { address = "192.168.1.122"; prefixLength = 24; }
         ];
diff --git a/nixos/tests/nat.nix b/nixos/tests/nat.nix
index 9c280fe8b5b6..04b4f0f045f0 100644
--- a/nixos/tests/nat.nix
+++ b/nixos/tests/nat.nix
@@ -11,7 +11,6 @@ import ./make-test.nix ({ pkgs, lib, withFirewall, withConntrackHelpers ? false,
       lib.mkMerge [
         { virtualisation.vlans = [ 2 1 ];
           networking.firewall.enable = withFirewall;
-          networking.firewall.allowPing = true;
           networking.nat.internalIPs = [ "192.168.1.0/24" ];
           networking.nat.externalInterface = "eth1";
         }
@@ -33,7 +32,6 @@ import ./make-test.nix ({ pkgs, lib, withFirewall, withConntrackHelpers ? false,
           { pkgs, nodes, ... }:
           lib.mkMerge [
             { virtualisation.vlans = [ 1 ];
-              networking.firewall.allowPing = true;
               networking.defaultGateway =
                 (pkgs.lib.head nodes.router.config.networking.interfaces.eth2.ipv4.addresses).address;
             }
diff --git a/nixos/tests/networking.nix b/nixos/tests/networking.nix
index 87a8c4c0e196..d1d4fd41dda6 100644
--- a/nixos/tests/networking.nix
+++ b/nixos/tests/networking.nix
@@ -17,7 +17,6 @@ let
       networking = {
         useDHCP = false;
         useNetworkd = networkd;
-        firewall.allowPing = true;
         firewall.checkReversePath = true;
         firewall.allowedUDPPorts = [ 547 ];
         interfaces = mkOverride 0 (listToAttrs (flip map vlanIfs (n:
@@ -86,7 +85,6 @@ let
         virtualisation.vlans = [ 1 2 ];
         networking = {
           useNetworkd = networkd;
-          firewall.allowPing = true;
           useDHCP = false;
           defaultGateway = "192.168.1.1";
           interfaces.eth1.ipv4.addresses = mkOverride 0 [
@@ -139,7 +137,6 @@ let
         virtualisation.vlans = [ 1 2 ];
         networking = {
           useNetworkd = networkd;
-          firewall.allowPing = true;
           useDHCP = true;
           interfaces.eth1 = {
             ipv4.addresses = mkOverride 0 [ ];
@@ -194,7 +191,6 @@ let
         virtualisation.vlans = [ 1 2 ];
         networking = {
           useNetworkd = networkd;
-          firewall.allowPing = true;
           useDHCP = false;
           interfaces.eth1 = {
             ipv4.addresses = mkOverride 0 [ ];
@@ -234,7 +230,6 @@ let
         virtualisation.vlans = [ 1 2 ];
         networking = {
           useNetworkd = networkd;
-          firewall.allowPing = true;
           useDHCP = false;
           bonds.bond = {
             interfaces = [ "eth1" "eth2" ];
@@ -271,7 +266,6 @@ let
         virtualisation.vlans = [ vlan ];
         networking = {
           useNetworkd = networkd;
-          firewall.allowPing = true;
           useDHCP = false;
           interfaces.eth1.ipv4.addresses = mkOverride 0
             [ { inherit address; prefixLength = 24; } ];
@@ -285,7 +279,6 @@ let
         virtualisation.vlans = [ 1 2 ];
         networking = {
           useNetworkd = networkd;
-          firewall.allowPing = true;
           useDHCP = false;
           bridges.bridge.interfaces = [ "eth1" "eth2" ];
           interfaces.eth1.ipv4.addresses = mkOverride 0 [ ];
@@ -329,7 +322,6 @@ let
           # reverse path filtering rules for the macvlan interface seem
           # to be incorrect, causing the test to fail. Disable temporarily.
           firewall.checkReversePath = false;
-          firewall.allowPing = true;
           useDHCP = true;
           macvlans.macvlan.interface = "eth1";
           interfaces.eth1.ipv4.addresses = mkOverride 0 [ ];
@@ -415,7 +407,6 @@ let
         #virtualisation.vlans = [ 1 ];
         networking = {
           useNetworkd = networkd;
-          firewall.allowPing = true;
           useDHCP = false;
           vlans.vlan = {
             id = 1;
diff --git a/nixos/tests/quagga.nix b/nixos/tests/quagga.nix
index 0ff14a21584a..6aee7ea57f03 100644
--- a/nixos/tests/quagga.nix
+++ b/nixos/tests/quagga.nix
@@ -66,7 +66,6 @@ import ./make-test.nix ({ pkgs, ... }:
             virtualisation.vlans = [ 3 ];
             networking.defaultGateway = ifAddr nodes.router2 "eth1";
             networking.firewall.allowedTCPPorts = [ 80 ];
-            networking.firewall.allowPing = true;
             services.httpd.enable = true;
             services.httpd.adminAddr = "foo@example.com";
           };

From 5e5e57c5728722450091160b2b0dbf53a311b230 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Kristoffer=20S=C3=B8holm?= <k.soeholm@gmail.com>
Date: Tue, 30 Oct 2018 22:47:08 +0100
Subject: [PATCH 0172/1129] buildFHSUserEnv: use runScript in env (#49077)

This makes its behaviour conform to what is implied in the
documentation.
---
 pkgs/build-support/build-fhs-userenv/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/build-support/build-fhs-userenv/default.nix b/pkgs/build-support/build-fhs-userenv/default.nix
index c733556de45c..2bad200efc4d 100644
--- a/pkgs/build-support/build-fhs-userenv/default.nix
+++ b/pkgs/build-support/build-fhs-userenv/default.nix
@@ -28,7 +28,7 @@ in runCommand name {
   passthru = passthru // {
     env = runCommand "${name}-shell-env" {
       shellHook = ''
-        exec ${chrootenv} ${init "bash"} "$(pwd)"
+        exec ${chrootenv} ${init runScript} "$(pwd)"
       '';
     } ''
       echo >&2 ""

From 5d616900ec910afa369f57139c64edb97d99fecd Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Tue, 30 Oct 2018 17:11:18 -0500
Subject: [PATCH 0173/1129] thunderbolt: cleanup

---
 .../os-specific/linux/thunderbolt/default.nix | 21 ++++++-------------
 1 file changed, 6 insertions(+), 15 deletions(-)

diff --git a/pkgs/os-specific/linux/thunderbolt/default.nix b/pkgs/os-specific/linux/thunderbolt/default.nix
index ac687de8c9ab..faf47c96a5e6 100644
--- a/pkgs/os-specific/linux/thunderbolt/default.nix
+++ b/pkgs/os-specific/linux/thunderbolt/default.nix
@@ -16,22 +16,13 @@ stdenv.mkDerivation rec {
     sha256 = "02w1bfm7xvq0dzkhwqiq0camkzz9kvciyhnsis61c8vzp39cwx0x";
   };
 
-  buildInputs = [
-    boost
-    cmake
-    pkgconfig
-    txt2tags
-  ];
+  nativeBuildInputs = [ cmake pkgconfig txt2tags ];
+  buildInputs = [ boost ];
 
-  # These can't go in the normal nix cmakeFlags because $out needs to be
-  # expanded by the shell, not by cmake or nix.  $ENV{out} doesn't work right
-  # either; it results in /build/source/build//nix/store/blahblahblahblah/bin/
-  # TODO: use ${placeholder "out"} when possible.
-  #       See https://github.com/NixOS/nixpkgs/pull/37693
-  preConfigure = ''
-    cmakeFlags+=" -DUDEV_BIN_DIR=$out/bin"
-    cmakeFlags+=" -DUDEV_RULES_DIR=$out/etc/udev/rules.d"
-  '';
+  cmakeFlags = [
+    "-DUDEV_BIN_DIR=${placeholder "out"}/bin"
+    "-DUDEV_RULES_DIR=${placeholder "out"}/etc/udev/rules.d"
+  ];
 
   meta = {
     description = "Thunderbolt(TM) user-space components";

From 1c7d246d8189144e3100036571efcd975040342e Mon Sep 17 00:00:00 2001
From: Ignat Loskutov <ignat.loskutov@gmail.com>
Date: Wed, 31 Oct 2018 01:44:55 +0300
Subject: [PATCH 0174/1129] drop the obsolete '--disable-thp' option

---
 pkgs/development/libraries/jemalloc/common.nix | 6 +-----
 1 file changed, 1 insertion(+), 5 deletions(-)

diff --git a/pkgs/development/libraries/jemalloc/common.nix b/pkgs/development/libraries/jemalloc/common.nix
index d8866ae3ff89..593f4411f19f 100644
--- a/pkgs/development/libraries/jemalloc/common.nix
+++ b/pkgs/development/libraries/jemalloc/common.nix
@@ -12,11 +12,7 @@ stdenv.mkDerivation (rec {
   # By default, jemalloc puts a je_ prefix onto all its symbols on OSX, which
   # then stops downstream builds (mariadb in particular) from detecting it. This
   # option should remove the prefix and give us a working jemalloc.
-  configureFlags = stdenv.lib.optional stdenv.isDarwin "--with-jemalloc-prefix="
-                   # jemalloc is unable to correctly detect transparent hugepage support on
-                   # ARM (https://github.com/jemalloc/jemalloc/issues/526), and the default
-                   # kernel ARMv6/7 kernel does not enable it, so we explicitly disable support
-                   ++ stdenv.lib.optional stdenv.isAarch32 "--disable-thp";
+  configureFlags = stdenv.lib.optional stdenv.isDarwin "--with-jemalloc-prefix=";
   doCheck = true;
 
   enableParallelBuilding = true;

From bbc3cb31e8328cfbf7ce7f5d8db6cfbd63f9cc79 Mon Sep 17 00:00:00 2001
From: Ali Abrar <aliabrar@gmail.com>
Date: Tue, 30 Oct 2018 18:50:22 -0400
Subject: [PATCH 0175/1129] xfce4-terminal: add missing gsettings schema
 dependency

---
 pkgs/desktops/xfce4-13/xfce4-terminal/default.nix | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pkgs/desktops/xfce4-13/xfce4-terminal/default.nix b/pkgs/desktops/xfce4-13/xfce4-terminal/default.nix
index 5ee6e338ea4b..6bc88ee76611 100644
--- a/pkgs/desktops/xfce4-13/xfce4-terminal/default.nix
+++ b/pkgs/desktops/xfce4-13/xfce4-terminal/default.nix
@@ -1,4 +1,4 @@
-{ mkXfceDerivation, gtk3, libxfce4ui, vte }:
+{ mkXfceDerivation, gtk3, libxfce4ui, wrapGAppsHook, vte }:
 
 mkXfceDerivation rec {
   category = "apps";
@@ -8,6 +8,7 @@ mkXfceDerivation rec {
   sha256 = "1s1dq560icg602jjb2ja58x7hxg4ikp3jrrf74v3qgi0ir950k2y";
 
   buildInputs = [ gtk3 libxfce4ui vte ];
+  nativeBuildInputs = [ wrapGAppsHook ];
 
   meta = {
     description = "A modern terminal emulator";

From a937dbedea73a562101067fe72a4aa0dadea698d Mon Sep 17 00:00:00 2001
From: Lizard <tmplt@dragons.rocks>
Date: Wed, 31 Oct 2018 00:01:00 +0100
Subject: [PATCH 0176/1129] nixos/libvirtd: utilize onShutdown option (#49480)

`services.virtualisation.libvirtd.onShutdown` was previously unused.
While suspending a domain on host shutdown is the default, this commit
makes it so domains can be shut down, also.
---
 nixos/modules/virtualisation/libvirtd.nix | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/nixos/modules/virtualisation/libvirtd.nix b/nixos/modules/virtualisation/libvirtd.nix
index 3e38662f5b0f..f4d7af1664af 100644
--- a/nixos/modules/virtualisation/libvirtd.nix
+++ b/nixos/modules/virtualisation/libvirtd.nix
@@ -196,6 +196,8 @@ in {
       wantedBy = [ "multi-user.target" ];
       path = with pkgs; [ coreutils libvirt gawk ];
       restartIfChanged = false;
+
+      environment.ON_SHUTDOWN = "${cfg.onShutdown}";
     };
 
     systemd.sockets.virtlogd = {

From fa53671e799f55d5379d3c5815c4888c8b88f56b Mon Sep 17 00:00:00 2001
From: Patrick Hilhorst <git@hilhorst.be>
Date: Wed, 31 Oct 2018 01:16:30 +0100
Subject: [PATCH 0177/1129] albert: 0.14.21 -> 0.14.22

---
 pkgs/applications/misc/albert/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/albert/default.nix b/pkgs/applications/misc/albert/default.nix
index f16144f3befa..b69ef905cfbf 100644
--- a/pkgs/applications/misc/albert/default.nix
+++ b/pkgs/applications/misc/albert/default.nix
@@ -3,7 +3,7 @@
 
 let
   pname = "albert";
-  version = "0.14.21";
+  version = "0.14.22";
 in
 mkDerivation rec {
   name = "${pname}-${version}";
@@ -12,7 +12,7 @@ mkDerivation rec {
     owner  = "albertlauncher";
     repo   = "albert";
     rev    = "v${version}";
-    sha256 = "16nk9krn1mwr0bh57viig9hizqyp3slna0qg7s5a736nsfxy226w";
+    sha256 = "0i9kss5szirmd0pzw3cm692kl9rhkan1zfywfqrjdf3i3b6914sg";
     fetchSubmodules = true;
   };
 

From cca88cc1340ba323956e6926ed69d8775c2dfee4 Mon Sep 17 00:00:00 2001
From: Patrick Hilhorst <git@hilhorst.be>
Date: Wed, 31 Oct 2018 01:16:45 +0100
Subject: [PATCH 0178/1129] albert: add myself as maintainer

---
 pkgs/applications/misc/albert/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/applications/misc/albert/default.nix b/pkgs/applications/misc/albert/default.nix
index b69ef905cfbf..d1a62dad6c9f 100644
--- a/pkgs/applications/misc/albert/default.nix
+++ b/pkgs/applications/misc/albert/default.nix
@@ -48,7 +48,7 @@ mkDerivation rec {
     homepage    = https://albertlauncher.github.io/;
     description = "Desktop agnostic launcher";
     license     = licenses.gpl3Plus;
-    maintainers = with maintainers; [ ericsagnes ];
+    maintainers = with maintainers; [ ericsagnes synthetica ];
     platforms   = platforms.linux;
   };
 }

From 2d0ec8b28873bc6b933b10ed2aa6411237a625f5 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Sat, 24 Mar 2018 12:11:02 -0500
Subject: [PATCH 0179/1129] stage1 boot: use stdenv.cc.libc

(cherry picked from commit d3ae884c9eeb4a6f66ac4e57764c04db16ea7c71)
---
 nixos/modules/system/boot/stage-1.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nixos/modules/system/boot/stage-1.nix b/nixos/modules/system/boot/stage-1.nix
index f4cf9753c0a1..e7167999a6f8 100644
--- a/nixos/modules/system/boot/stage-1.nix
+++ b/nixos/modules/system/boot/stage-1.nix
@@ -147,7 +147,7 @@ let
       ${config.boot.initrd.extraUtilsCommands}
 
       # Copy ld manually since it isn't detected correctly
-      cp -pv ${pkgs.glibc.out}/lib/ld*.so.? $out/lib
+      cp -pv ${pkgs.stdenv.cc.libc.out}/lib/ld*.so.? $out/lib
 
       # Copy all of the needed libraries
       find $out/bin $out/lib -type f | while read BIN; do

From 9de0b2883ac4778c7c8fae57f9efeb4d773bdd08 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Sat, 24 Mar 2018 15:33:47 -0500
Subject: [PATCH 0180/1129] nixos: use pkgs.getent and stdenv.cc.libc

(cherry picked from commit 52eba9753aeba4f02c8ce0de50f10bd98de1ef1e)
---
 nixos/modules/config/system-path.nix                  | 4 +++-
 nixos/modules/system/activation/activation-script.nix | 2 +-
 2 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/nixos/modules/config/system-path.nix b/nixos/modules/config/system-path.nix
index c07e19bd03c4..1793dc628edf 100644
--- a/nixos/modules/config/system-path.nix
+++ b/nixos/modules/config/system-path.nix
@@ -19,7 +19,9 @@ let
       pkgs.diffutils
       pkgs.findutils
       pkgs.gawk
-      pkgs.glibc # for ldd, getent
+      pkgs.stdenv.cc.libc
+      pkgs.getent
+      pkgs.getconf
       pkgs.gnugrep
       pkgs.gnupatch
       pkgs.gnused
diff --git a/nixos/modules/system/activation/activation-script.nix b/nixos/modules/system/activation/activation-script.nix
index b1eaf0189562..0ed7c0f53eb9 100644
--- a/nixos/modules/system/activation/activation-script.nix
+++ b/nixos/modules/system/activation/activation-script.nix
@@ -21,7 +21,7 @@ let
     [ coreutils
       gnugrep
       findutils
-      glibc # needed for getent
+      getent
       shadow
       nettools # needed for hostname
       utillinux # needed for mount and mountpoint

From afdf16b7148805a9eae44867bc70a02015d6a765 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Sat, 24 Mar 2018 20:51:32 -0500
Subject: [PATCH 0181/1129] apparmor-suid: don't force glibc

(cherry picked from commit 131131e58fc66365854f37f4fe2bf6ca01c8aed6)
---
 nixos/modules/security/apparmor-suid.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nixos/modules/security/apparmor-suid.nix b/nixos/modules/security/apparmor-suid.nix
index dfbf5d859ba9..498c2f25d1c0 100644
--- a/nixos/modules/security/apparmor-suid.nix
+++ b/nixos/modules/security/apparmor-suid.nix
@@ -28,7 +28,7 @@ with lib;
         capability setuid,
         network inet raw,
 
-        ${pkgs.glibc.out}/lib/*.so mr,
+        ${pkgs.stdenv.cc.libc.out}/lib/*.so mr,
         ${pkgs.libcap.lib}/lib/libcap.so* mr,
         ${pkgs.attr.out}/lib/libattr.so* mr,
 

From 2603e3a5e97e5c85f828d52142f25c4a928fe1ad Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Wed, 28 Mar 2018 08:46:56 -0500
Subject: [PATCH 0182/1129] gtk: don't hardcode glibc use

(cherry picked from commit 6e6f839093ad080c3a61810e9720165faf103e81)
---
 .../services/x11/display-managers/lightdm-greeters/gtk.nix      | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nixos/modules/services/x11/display-managers/lightdm-greeters/gtk.nix b/nixos/modules/services/x11/display-managers/lightdm-greeters/gtk.nix
index 013956c05466..d1ee076e9185 100644
--- a/nixos/modules/services/x11/display-managers/lightdm-greeters/gtk.nix
+++ b/nixos/modules/services/x11/display-managers/lightdm-greeters/gtk.nix
@@ -22,7 +22,7 @@ let
       # This wrapper ensures that we actually get themes
       makeWrapper ${pkgs.lightdm_gtk_greeter}/sbin/lightdm-gtk-greeter \
         $out/greeter \
-        --prefix PATH : "${pkgs.glibc.bin}/bin" \
+        --prefix PATH : "${lib.getBin pkgs.stdenv.cc.libc}/bin" \
         --set GDK_PIXBUF_MODULE_FILE "${pkgs.librsvg.out}/lib/gdk-pixbuf-2.0/2.10.0/loaders.cache" \
         --set GTK_PATH "${theme}:${pkgs.gtk3.out}" \
         --set GTK_EXE_PREFIX "${theme}" \

From 8cc028fd34953e03ee8e91cca141fe1f6294de82 Mon Sep 17 00:00:00 2001
From: Travis Athougies <iammisc@gmail.com>
Date: Mon, 22 Oct 2018 11:11:02 -0700
Subject: [PATCH 0183/1129] nixos/networking.nix: only setup rpc on glibc

(cherry picked from commit 4177dc3f774523fea7d181601d7c3301fda13790)
and
(cherry picked from commit a2f0c95baf57fb735dd47b5db73274f7e75df7c9)
---
 nixos/modules/config/networking.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/nixos/modules/config/networking.nix b/nixos/modules/config/networking.nix
index 1eb6fb43604a..627cce67e97d 100644
--- a/nixos/modules/config/networking.nix
+++ b/nixos/modules/config/networking.nix
@@ -228,9 +228,6 @@ in
         # /etc/protocols: IP protocol numbers.
         "protocols".source  = pkgs.iana-etc + "/etc/protocols";
 
-        # /etc/rpc: RPC program numbers.
-        "rpc".source = pkgs.glibc.out + "/etc/rpc";
-
         # /etc/hosts: Hostname-to-IP mappings.
         "hosts".text = let
           oneToString = set: ip: ip + " " + concatStringsSep " " set.${ip};
@@ -268,6 +265,9 @@ in
         "resolv.conf".source = "${pkgs.systemd}/lib/systemd/resolv.conf";
       } // optionalAttrs (config.services.resolved.enable && dnsmasqResolve) {
         "dnsmasq-resolv.conf".source = "/run/systemd/resolve/resolv.conf";
+      } // optionalAttrs (pkgs.stdenv.hostPlatform.libc == "glibc") {
+        # /etc/rpc: RPC program numbers.
+        "rpc".source = pkgs.glibc.out + "/etc/rpc";
       };
 
       networking.proxy.envVars =

From ea1024e101a0ed75022f00402e14644e8fe07e36 Mon Sep 17 00:00:00 2001
From: Aaron Andersen <aaron@fosslib.net>
Date: Tue, 30 Oct 2018 22:49:39 -0400
Subject: [PATCH 0184/1129] openscenegraph: 3.6.2 -> 3.6.3

---
 pkgs/development/libraries/openscenegraph/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/libraries/openscenegraph/default.nix b/pkgs/development/libraries/openscenegraph/default.nix
index cddc2038791e..9f5ef3ff68c8 100644
--- a/pkgs/development/libraries/openscenegraph/default.nix
+++ b/pkgs/development/libraries/openscenegraph/default.nix
@@ -27,13 +27,13 @@
 
 stdenv.mkDerivation rec {
   name = "openscenegraph-${version}";
-  version = "3.6.2";
+  version = "3.6.3";
 
   src = fetchFromGitHub {
     owner = "openscenegraph";
     repo = "OpenSceneGraph";
-    rev = "fb40a0d1db018ff39a08699a7f17f7eb6d949c36";
-    sha256 = "03jk6lclyd4biniaw04w7j0z1spkm69f1c19i37b8v9x3zv1p1id";
+    rev = "d011ca4e8d83549a3688bf6bb8cd468dd9684822";
+    sha256 = "0h32z15sa8sbq276j0iib0n707m8bs4p5ji9z2ah411446paad9q";
   };
 
   nativeBuildInputs = [ pkgconfig cmake doxygen ];

From df51c5ef808d01a72ce3990254c880c389c7f2d4 Mon Sep 17 00:00:00 2001
From: sjau <github.com@sjau.ch>
Date: Sun, 28 Oct 2018 15:13:00 +0100
Subject: [PATCH 0185/1129] easysnap: init at 2018-10-28

---
 maintainers/maintainer-list.nix        |  5 +++++
 pkgs/tools/backup/easysnap/default.nix | 31 ++++++++++++++++++++++++++
 pkgs/top-level/all-packages.nix        |  2 ++
 3 files changed, 38 insertions(+)
 create mode 100644 pkgs/tools/backup/easysnap/default.nix

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index b6add449b9bf..841128affd82 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -3900,6 +3900,11 @@
     github = "sjagoe";
     name = "Simon Jagoe";
   };
+  sjau = {
+    email = "nixos@sjau.ch";
+    github = "sjau";
+    name = "Stephan Jau";
+  };
   sjmackenzie = {
     email = "setori88@gmail.com";
     github = "sjmackenzie";
diff --git a/pkgs/tools/backup/easysnap/default.nix b/pkgs/tools/backup/easysnap/default.nix
new file mode 100644
index 000000000000..a8c726c9e161
--- /dev/null
+++ b/pkgs/tools/backup/easysnap/default.nix
@@ -0,0 +1,31 @@
+{stdenv, fetchFromGitHub, zfs }:
+
+stdenv.mkDerivation rec {
+  name = "easysnap-${version}";
+  version = "unstable-2018-10-28";
+
+  src = fetchFromGitHub {
+    owner = "sjau";
+    repo = "easysnap";
+    rev = "aa2768762da7730aa3eb90fdc2190a8359976edc";
+    sha256 = "0csn7capsmlkin4cf1fgl766gvszvqfllqkiyz0g9bvbapxv7nba";
+  };
+
+  installPhase = ''
+    mkdir -p $out/bin
+    cp -n easysnap* $out/bin/
+
+    for i in $out/bin/*; do
+      substituteInPlace $i \
+        --replace zfs ${zfs}/bin/zfs
+    done
+  '';
+
+  meta = with stdenv.lib; {
+    homepage    = https://github.com/sjau/easysnap;
+    description = "Customizable ZFS Snapshotting tool with zfs send/recv pulling";
+    license     = licenses.gpl3;
+    maintainers = with maintainers; [ sjau ];
+  };
+
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 740c3111a200..a1120da229ce 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -2335,6 +2335,8 @@ with pkgs;
 
   easyrsa2 = callPackage ../tools/networking/easyrsa/2.x.nix { };
 
+  easysnap = callPackage ../tools/backup/easysnap { };
+
   ebook_tools = callPackage ../tools/text/ebook-tools { };
 
   ecryptfs = callPackage ../tools/security/ecryptfs { };

From beeaebad5ec4c812a6f6aa6bede083ac2ff47c1c Mon Sep 17 00:00:00 2001
From: Stefan Wiehler <me@sephalon.net>
Date: Tue, 9 Oct 2018 21:14:33 +0200
Subject: [PATCH 0186/1129] fstrcmp: init at 0.7

---
 .../development/libraries/fstrcmp/default.nix | 31 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 33 insertions(+)
 create mode 100644 pkgs/development/libraries/fstrcmp/default.nix

diff --git a/pkgs/development/libraries/fstrcmp/default.nix b/pkgs/development/libraries/fstrcmp/default.nix
new file mode 100644
index 000000000000..68f3c9d0ee59
--- /dev/null
+++ b/pkgs/development/libraries/fstrcmp/default.nix
@@ -0,0 +1,31 @@
+{ stdenv, fetchzip, libtool, ghostscript, groff }:
+
+stdenv.mkDerivation rec {
+  name = "fstrcmp-${version}";
+  version = "0.7";
+
+  src = fetchzip {
+    url = "https://sourceforge.net/projects/fstrcmp/files/fstrcmp/${version}/fstrcmp-${version}.D001.tar.gz";
+    sha256 = "0yg3y3k0wz50gmhgigfi2dx725w1gc8snb95ih7vpcnj6kabgz9a";
+  };
+
+  outputs = [ "out" "dev" "doc" "man" "devman" ];
+
+  nativeBuildInputs = [ libtool ghostscript groff ];
+
+  enableParallelBuilding = true;
+
+  meta = with stdenv.lib; {
+    description = "Make fuzzy comparisons of strings and byte arrays";
+    longDescription = ''
+      The fstrcmp project provides a library that is used to make fuzzy
+      comparisons of strings and byte arrays, including multi-byte character
+      strings.
+    '';
+    homepage = http://fstrcmp.sourceforge.net/;
+    downloadPage = https://sourceforge.net/projects/fstrcmp/;
+    license = licenses.gpl3;
+    maintainers = [ maintainers.sephalon ];
+    platforms = platforms.unix;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 1c4b7a5a1eb9..db31219cad4d 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -9568,6 +9568,8 @@ with pkgs;
 
   frog = self.languageMachines.frog;
 
+  fstrcmp = callPackage ../development/libraries/fstrcmp { };
+
   fstrm = callPackage ../development/libraries/fstrm { };
 
   cfitsio = callPackage ../development/libraries/cfitsio { };

From b786a47e9ebd8018079b094bdec4abbc7b785076 Mon Sep 17 00:00:00 2001
From: royneary <christian@ulrich.earth>
Date: Wed, 31 Oct 2018 10:37:38 +0100
Subject: [PATCH 0187/1129] nim: move build time dependencies into
 nativeBuildInputs

---
 pkgs/development/compilers/nim/default.nix | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/compilers/nim/default.nix b/pkgs/development/compilers/nim/default.nix
index 3596c17b4071..3f067553297e 100644
--- a/pkgs/development/compilers/nim/default.nix
+++ b/pkgs/development/compilers/nim/default.nix
@@ -27,8 +27,11 @@ stdenv.mkDerivation rec {
   #    used for bootstrapping, but koch insists on moving the nim compiler around
   #    as part of building it, so it cannot be read-only
 
-  buildInputs = [
+  nativeBuildInputs = [
     makeWrapper nodejs-slim-8_x tzdata coreutils
+  ];
+
+  buildInputs = [
     openssl pcre readline boehmgc sfml
   ];
 

From 9dcdf5a54564603ed47c6a8773edd4b08a5b2e8b Mon Sep 17 00:00:00 2001
From: royneary <christian@ulrich.earth>
Date: Wed, 31 Oct 2018 10:38:16 +0100
Subject: [PATCH 0188/1129] nim: update nodejs-slim

---
 pkgs/development/compilers/nim/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/compilers/nim/default.nix b/pkgs/development/compilers/nim/default.nix
index 3f067553297e..ae36041b33eb 100644
--- a/pkgs/development/compilers/nim/default.nix
+++ b/pkgs/development/compilers/nim/default.nix
@@ -1,6 +1,6 @@
 # based on https://github.com/nim-lang/Nim/blob/v0.18.0/.travis.yml
 
-{ stdenv, lib, fetchurl, makeWrapper, nodejs-slim-8_x, openssl, pcre, readline, boehmgc, sfml, tzdata, coreutils }:
+{ stdenv, lib, fetchurl, makeWrapper, nodejs-slim-10_x, openssl, pcre, readline, boehmgc, sfml, tzdata, coreutils }:
 
 stdenv.mkDerivation rec {
   name = "nim-${version}";
@@ -28,7 +28,7 @@ stdenv.mkDerivation rec {
   #    as part of building it, so it cannot be read-only
 
   nativeBuildInputs = [
-    makeWrapper nodejs-slim-8_x tzdata coreutils
+    makeWrapper nodejs-slim-10_x tzdata coreutils
   ];
 
   buildInputs = [

From 43f6d9ada488ea66d588756c182ff3a212cf42e0 Mon Sep 17 00:00:00 2001
From: Patrick Hilhorst <git@hilhorst.be>
Date: Wed, 31 Oct 2018 10:43:00 +0100
Subject: [PATCH 0189/1129] pytorch: remove pre-cuda92 hack

---
 pkgs/top-level/python-packages.nix | 14 +-------------
 1 file changed, 1 insertion(+), 13 deletions(-)

diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index b2cff4940c13..eefc7baa4484 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -2282,20 +2282,8 @@ in {
 
   grappelli_safe = callPackage ../development/python-modules/grappelli_safe { };
 
-  pytorch = let
-    # Fails with CUDA 9.1 and GCC 6.4:
-    # https://github.com/pytorch/pytorch/issues/5831
-    # https://devtalk.nvidia.com/default/topic/1028112
-    # We should be able to remove this when CUDA 9.2 is released.
-    cudatoolkit_9 = pkgs.cudatoolkit_9.override {
-      gcc6 = pkgs.gcc5;
-    };
-  in callPackage ../development/python-modules/pytorch {
+  pytorch = callPackage ../development/python-modules/pytorch {
     cudaSupport = pkgs.config.cudaSupport or false;
-    cudatoolkit = cudatoolkit_9;
-    cudnn = pkgs.cudnn_cudatoolkit_9.override {
-      inherit cudatoolkit_9;
-    };
   };
 
   pytorchWithCuda = self.pytorch.override {

From 771849af9e9081c11994a3eded6229f2adfe7496 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Sun, 28 Oct 2018 17:18:12 +0100
Subject: [PATCH 0190/1129] LTS Haskell 12.16

---
 .../configuration-hackage2nix.yaml            | 34 +++++++++++--------
 1 file changed, 20 insertions(+), 14 deletions(-)

diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
index b5f5e1f3675c..a2b86b220940 100644
--- a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
+++ b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
@@ -45,7 +45,7 @@ default-package-overrides:
   - base-compat-batteries ==0.10.1
   # Newer versions don't work in LTS-12.x
   - cassava-megaparsec < 2
-  # LTS Haskell 12.14
+  # LTS Haskell 12.16
   - abstract-deque ==0.3
   - abstract-deque-tests ==0.3
   - abstract-par ==0.3.3
@@ -180,7 +180,7 @@ default-package-overrides:
   - amazonka-xray ==1.6.0
   - amqp ==0.18.1
   - annotated-wl-pprint ==0.7.0
-  - ansi-terminal ==0.8.1
+  - ansi-terminal ==0.8.2
   - ansi-wl-pprint ==0.6.8.2
   - ANum ==0.2.0.2
   - api-field-json-th ==0.1.0.2
@@ -436,7 +436,7 @@ default-package-overrides:
   - concurrency ==1.6.1.0
   - concurrent-extra ==0.7.0.12
   - concurrent-output ==1.10.7
-  - concurrent-split ==0.0.1
+  - concurrent-split ==0.0.1.1
   - concurrent-supply ==0.1.8
   - cond ==0.4.1.1
   - conduit ==1.3.1
@@ -552,7 +552,7 @@ default-package-overrides:
   - data-serializer ==0.3.4
   - datasets ==0.2.5
   - data-textual ==0.3.0.2
-  - data-tree-print ==0.1.0.1
+  - data-tree-print ==0.1.0.2
   - dataurl ==0.1.0.0
   - DAV ==1.3.2
   - dawg-ord ==0.5.1.0
@@ -638,7 +638,7 @@ default-package-overrides:
   - dyre ==0.8.12
   - Earley ==0.12.1.0
   - easy-file ==0.2.2
-  - easytest ==0.2
+  - easytest ==0.2.1
   - Ebnf2ps ==1.0.15
   - echo ==0.1.3
   - ed25519 ==0.0.5.0
@@ -880,6 +880,12 @@ default-package-overrides:
   - greskell-core ==0.1.2.4
   - greskell-websocket ==0.1.1.2
   - groom ==0.1.2.1
+  - groundhog ==0.9.0
+  - groundhog-inspector ==0.9.0
+  - groundhog-mysql ==0.9.0
+  - groundhog-postgresql ==0.9.0.1
+  - groundhog-sqlite ==0.9.0
+  - groundhog-th ==0.9.0.1
   - groups ==0.4.1.0
   - gtk ==0.14.10
   - gtk2hs-buildtools ==0.13.4.0
@@ -896,7 +902,7 @@ default-package-overrides:
   - hamtsolo ==1.0.3
   - HandsomeSoup ==0.4.2
   - handwriting ==0.1.0.3
-  - hapistrano ==0.3.6.1
+  - hapistrano ==0.3.7.0
   - happstack-server ==7.5.1.1
   - happy ==1.19.9
   - hasbolt ==0.1.3.0
@@ -1004,8 +1010,8 @@ default-package-overrides:
   - hsdns ==1.7.1
   - hsebaysdk ==0.4.0.0
   - hsemail ==2
-  - HSet ==0.0.1
   - hset ==2.2.0
+  - HSet ==0.0.1
   - hsexif ==0.6.1.6
   - hs-functors ==0.1.3.0
   - hs-GeoIP ==0.3
@@ -1248,7 +1254,7 @@ default-package-overrides:
   - libffi ==0.1
   - libgit ==0.3.1
   - libgraph ==1.14
-  - libmpd ==0.9.0.8
+  - libmpd ==0.9.0.9
   - libxml-sax ==0.7.5
   - LibZip ==1.0.1
   - lifted-async ==0.10.0.3
@@ -1523,7 +1529,7 @@ default-package-overrides:
   - palette ==0.3.0.1
   - pandoc ==2.2.1
   - pandoc-citeproc ==0.14.8
-  - pandoc-types ==1.17.5.2
+  - pandoc-types ==1.17.5.4
   - pango ==0.13.5.0
   - papillon ==0.1.0.6
   - parallel ==3.2.2.0
@@ -1746,7 +1752,7 @@ default-package-overrides:
   - require ==0.2.1
   - req-url-extra ==0.1.0.0
   - reroute ==0.5.0.0
-  - resolv ==0.1.1.1
+  - resolv ==0.1.1.2
   - resource-pool ==0.2.3.2
   - resourcet ==1.2.2
   - rest-stringmap ==0.2.0.7
@@ -1785,8 +1791,8 @@ default-package-overrides:
   - sandman ==0.2.0.1
   - say ==0.1.0.1
   - sbp ==2.3.17
-  - SCalendar ==1.1.0
   - scalendar ==1.2.0
+  - SCalendar ==1.1.0
   - scalpel ==0.5.1
   - scalpel-core ==0.5.1
   - scanner ==0.2
@@ -1952,7 +1958,7 @@ default-package-overrides:
   - storable-record ==0.0.4
   - storable-tuple ==0.0.3.3
   - storablevector ==0.2.13
-  - store ==0.5.0
+  - store ==0.5.0.1
   - store-core ==0.4.4
   - Strafunski-StrategyLib ==5.0.1.0
   - stratosphere ==0.24.4
@@ -2042,7 +2048,7 @@ default-package-overrides:
   - test-framework-th ==0.2.4
   - testing-feat ==1.1.0.0
   - testing-type-modifiers ==0.1.0.1
-  - texmath ==0.11.1.1
+  - texmath ==0.11.1.2
   - text ==1.2.3.1
   - text-binary ==0.2.1.1
   - text-builder ==0.5.4.3
@@ -2133,7 +2139,7 @@ default-package-overrides:
   - type-level-kv-list ==1.1.0
   - type-level-numbers ==0.1.1.1
   - typelits-witnesses ==0.3.0.3
-  - typenums ==0.1.2
+  - typenums ==0.1.2.1
   - type-of-html ==1.4.0.1
   - type-of-html-static ==0.1.0.2
   - type-operators ==0.1.0.4

From 5d18129ce8af9a69312818ea0a5a0029a04a2255 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Sun, 28 Oct 2018 17:20:30 +0100
Subject: [PATCH 0191/1129] hackage-packages.nix: automatic Haskell package set
 update

This update was generated by hackage2nix v2.11.1-2-g57c4f0f from Hackage revision
https://github.com/commercialhaskell/all-cabal-hashes/commit/b6545b2cd859ea6bc5ece441c647c671c81fe8ac.
---
 .../haskell-modules/hackage-packages.nix      | 1893 ++++++++++++-----
 1 file changed, 1382 insertions(+), 511 deletions(-)

diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix
index fe488d0447e1..bb6e6da1e0cb 100644
--- a/pkgs/development/haskell-modules/hackage-packages.nix
+++ b/pkgs/development/haskell-modules/hackage-packages.nix
@@ -766,6 +766,50 @@ self: {
        maintainers = with stdenv.lib.maintainers; [ abbradar ];
      }) {inherit (pkgs) emacs;};
 
+  "Agda_2_5_4_2" = callPackage
+    ({ mkDerivation, alex, array, async, base, binary, blaze-html
+     , boxes, bytestring, Cabal, containers, data-hash, deepseq
+     , directory, EdisonCore, edit-distance, emacs, equivalence
+     , filemanip, filepath, geniplate-mirror, gitrev, happy, hashable
+     , hashtables, haskeline, ieee754, mtl, murmur-hash, pretty, process
+     , regex-tdfa, stm, strict, template-haskell, text, time
+     , transformers, unordered-containers, uri-encode, zlib
+     }:
+     mkDerivation {
+       pname = "Agda";
+       version = "2.5.4.2";
+       sha256 = "07wvawpfjhx3gw2w53v27ncv1bl0kkx08wkm6wzxldbslkcasign";
+       isLibrary = true;
+       isExecutable = true;
+       enableSeparateDataOutput = true;
+       setupHaskellDepends = [ base Cabal filemanip filepath process ];
+       libraryHaskellDepends = [
+         array async base binary blaze-html boxes bytestring containers
+         data-hash deepseq directory EdisonCore edit-distance equivalence
+         filepath geniplate-mirror gitrev hashable hashtables haskeline
+         ieee754 mtl murmur-hash pretty process regex-tdfa stm strict
+         template-haskell text time transformers unordered-containers
+         uri-encode zlib
+       ];
+       libraryToolDepends = [ alex happy ];
+       executableHaskellDepends = [ base directory filepath process ];
+       executableToolDepends = [ emacs ];
+       postInstall = ''
+         files=("$data/share/ghc-"*"/"*"-ghc-"*"/Agda-"*"/lib/prim/Agda/"{Primitive.agda,Builtin"/"*.agda})
+         for f in "''${files[@]}" ; do
+           $out/bin/agda $f
+         done
+         for f in "''${files[@]}" ; do
+           $out/bin/agda -c --no-main $f
+         done
+         $out/bin/agda-mode compile
+       '';
+       description = "A dependently typed functional programming language and proof assistant";
+       license = "unknown";
+       hydraPlatforms = stdenv.lib.platforms.none;
+       maintainers = with stdenv.lib.maintainers; [ abbradar ];
+     }) {inherit (pkgs) emacs;};
+
   "Agda-executable" = callPackage
     ({ mkDerivation, Agda, base }:
      mkDerivation {
@@ -8951,10 +8995,8 @@ self: {
      }:
      mkDerivation {
        pname = "HaXml";
-       version = "1.25.4";
-       sha256 = "1d8xq37h627im5harybhsn08qjdaf6vskldm03cqbfjmr2w6fx6p";
-       revision = "1";
-       editedCabalFile = "1vnil3xdyhr48f0nxcaljbl1k5ibg5g5gghvrhykg447b0jvp922";
+       version = "1.25.5";
+       sha256 = "0d8jbiv53r3ndg76r3937idqdg34nhmb99vj087i73hjnv21mifb";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -10226,8 +10268,8 @@ self: {
     ({ mkDerivation, base, mtl, QuickCheck, Stream }:
      mkDerivation {
        pname = "IOSpec";
-       version = "0.3";
-       sha256 = "0dwl2nx8fisl1syggwd3060wa50lj5nl9312x4q7pq153cxjppyy";
+       version = "0.3.1";
+       sha256 = "1xfhsj8r2gf9wynsihls255qqwqj8vrjyn56rk60xvm27ya4f1d3";
        libraryHaskellDepends = [ base mtl QuickCheck Stream ];
        description = "A pure specification of the IO monad";
        license = stdenv.lib.licenses.bsd3;
@@ -12290,6 +12332,32 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "MissingH_1_4_0_1" = callPackage
+    ({ mkDerivation, array, base, containers, directory
+     , errorcall-eq-instance, filepath, hslogger, HUnit, mtl, network
+     , old-locale, old-time, parsec, process, QuickCheck, random
+     , regex-compat, testpack, time, unix
+     }:
+     mkDerivation {
+       pname = "MissingH";
+       version = "1.4.0.1";
+       sha256 = "0wcvgrmav480w7nf4bl14yi0jq2yzanysxwzwas9hpb28vyjlgr8";
+       revision = "1";
+       editedCabalFile = "04syc14nz11fay6fm6nlixyflrfhpg4jiyxx6mnxrl6asd3cl989";
+       libraryHaskellDepends = [
+         array base containers directory filepath hslogger HUnit mtl network
+         old-locale old-time parsec process random regex-compat time unix
+       ];
+       testHaskellDepends = [
+         array base containers directory errorcall-eq-instance filepath
+         hslogger HUnit mtl network old-locale old-time parsec process
+         QuickCheck random regex-compat testpack time unix
+       ];
+       description = "Large utility library";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "MissingH" = callPackage
     ({ mkDerivation, array, base, containers, directory
      , errorcall-eq-instance, filepath, hslogger, HUnit, mtl, network
@@ -15071,12 +15139,12 @@ self: {
      }) {};
 
   "QuickCheck-safe" = callPackage
-    ({ mkDerivation, base, QuickCheck }:
+    ({ mkDerivation, base, containers, QuickCheck }:
      mkDerivation {
        pname = "QuickCheck-safe";
-       version = "0.1.0.4";
-       sha256 = "0ixizi0cshqqczm86rnibas8zygf8i29l3i0jivvb81zi89rscl7";
-       libraryHaskellDepends = [ base QuickCheck ];
+       version = "0.1.0.5";
+       sha256 = "0l8wp2np4mlbybzwcz8g4r9d8c65yljnvizs3g1rvig4b65j283l";
+       libraryHaskellDepends = [ base containers QuickCheck ];
        description = "Safe reimplementation of QuickCheck's core";
        license = stdenv.lib.licenses.mit;
      }) {};
@@ -18650,8 +18718,8 @@ self: {
      }:
      mkDerivation {
        pname = "Villefort";
-       version = "0.1.2.16";
-       sha256 = "00ngq1i7f1sqksfl9cg1qzhp4fxv9h6mmjfljj3cahcw50h4al64";
+       version = "0.1.2.17";
+       sha256 = "17ga54kclbcr6vpiy6q5yws9535j9sg6isqggx05kz3hsa7nllbz";
        isLibrary = true;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -22167,8 +22235,8 @@ self: {
      }:
      mkDerivation {
        pname = "aeson-schema";
-       version = "0.4.1.2";
-       sha256 = "1afw0kf39myh4yqkkz8z1a7ji02j2iy7j66ch06pglvp5hzyi9dk";
+       version = "0.4.1.3";
+       sha256 = "17w0hih9l7x9r14s2mxywjzysm00f6bz6rqsgknvv9injakpscn3";
        enableSeparateDataOutput = true;
        libraryHaskellDepends = [
          aeson attoparsec base bytestring containers fail ghc-prim mtl
@@ -26876,8 +26944,8 @@ self: {
        pname = "ansi-pretty";
        version = "0.1.2.1";
        sha256 = "1ill2dlzbxn97smkzdqcjfx9z3fw7pgwvz6w36d92n8p7zwik23h";
-       revision = "5";
-       editedCabalFile = "18vg7p8ymwk3kfhvg8cn8vq574x52n8a2c7ihrg4jg1gdsdrn0vi";
+       revision = "6";
+       editedCabalFile = "1j2iyzf61wmwdrb8i3xynins7shjv89y4028sy13rfywsbqpjg4s";
        libraryHaskellDepends = [
          aeson ansi-wl-pprint array base bytestring containers generics-sop
          nats scientific semigroups tagged text time unordered-containers
@@ -26891,8 +26959,8 @@ self: {
     ({ mkDerivation, base, colour }:
      mkDerivation {
        pname = "ansi-terminal";
-       version = "0.8.1";
-       sha256 = "1fm489l5mnlyb6bidq7vxz5asvhshmxz38f0lijgj0z7yyzqpwwy";
+       version = "0.8.2";
+       sha256 = "147ss9wz03ww6ypbv6yh5vi1wfrfcaqm8r6nxh50vnp7254359wh";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [ base colour ];
@@ -27331,7 +27399,7 @@ self: {
        description = "Bindings to libaosd, a library for Cairo-based on-screen displays";
        license = stdenv.lib.licenses.bsd3;
        hydraPlatforms = stdenv.lib.platforms.none;
-     }) {libaosd = null;};
+     }) {inherit (pkgs) libaosd;};
 
   "ap-reflect" = callPackage
     ({ mkDerivation, base }:
@@ -28961,6 +29029,23 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "arraylist" = callPackage
+    ({ mkDerivation, base, hashable, initialize, MonadRandom, primitive
+     , smallcheck, tasty, tasty-smallcheck
+     }:
+     mkDerivation {
+       pname = "arraylist";
+       version = "0.1.0.0";
+       sha256 = "1swvn9k7j2pwcln4znzrszgwgdi4f26q9qlaz2fi8jixc089v91g";
+       libraryHaskellDepends = [ base initialize primitive ];
+       testHaskellDepends = [
+         base hashable MonadRandom primitive smallcheck tasty
+         tasty-smallcheck
+       ];
+       description = "Memory-efficient ArrayList implementation";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "arrow-extras" = callPackage
     ({ mkDerivation, base }:
      mkDerivation {
@@ -29123,10 +29208,8 @@ self: {
      }:
      mkDerivation {
        pname = "ascii";
-       version = "0.0.5.1";
-       sha256 = "06z63pr5g1wcsyii3pr8svz23cl9n4srspbkvby595pxfcbzkirn";
-       revision = "1";
-       editedCabalFile = "1v8pgvhl47c4sf226pg175wydw5a60lssz0876haqkqm5h7bjm7g";
+       version = "0.0.5.2";
+       sha256 = "1kbf6iml4nvkzf78xqvxy67469vznd05ig8aprq7zx5vr9njliby";
        libraryHaskellDepends = [
          base blaze-builder bytestring case-insensitive hashable semigroups
          text
@@ -29571,8 +29654,8 @@ self: {
     ({ mkDerivation, base, Cabal, directory, filepath }:
      mkDerivation {
        pname = "asset-bundle";
-       version = "0.1.0.0";
-       sha256 = "0fdl3dgnc5q9mv8w5g3qrhyprqhbyp4jrr5gimf9xzd67fwsnf86";
+       version = "0.1.0.1";
+       sha256 = "0wf0xnf4ljihzvbz8pkaiqwhvp00bwnyx0334s4757z6lsc2hsrw";
        libraryHaskellDepends = [ base Cabal directory filepath ];
        description = "A build-time Cabal library that bundles executables with assets";
        license = stdenv.lib.licenses.bsd3;
@@ -30348,16 +30431,16 @@ self: {
 
   "ats-pkg" = callPackage
     ({ mkDerivation, ansi-wl-pprint, base, binary, bytestring, bzlib
-     , Cabal, cli-setup, composition-prelude, containers, cpphs
-     , dependency, dhall, directory, file-embed, filemanip, filepath
-     , http-client, http-client-tls, lzma, microlens, mtl
-     , optparse-applicative, parallel-io, process, shake, shake-ats
-     , shake-c, shake-ext, tar, temporary, text, unix, zip-archive, zlib
+     , Cabal, cli-setup, composition-prelude, containers, dependency
+     , dhall, directory, file-embed, filemanip, filepath, http-client
+     , http-client-tls, lzma, microlens, mtl, optparse-applicative
+     , parallel-io, process, shake, shake-ats, shake-c, shake-ext, tar
+     , temporary, text, unix, zip-archive, zlib
      }:
      mkDerivation {
        pname = "ats-pkg";
-       version = "3.2.2.3";
-       sha256 = "111lwv4461ij5z8z9n0kyvqcrjk0x5yjajfc3wyc3lklgc6ccjva";
+       version = "3.2.3.0";
+       sha256 = "0yirmngvkmkxdbhh3r6b1j9385hhwnqpr6mmw9kf50axd7czx421";
        isLibrary = true;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -30368,7 +30451,6 @@ self: {
          microlens mtl parallel-io process shake shake-ats shake-c shake-ext
          tar text unix zip-archive zlib
        ];
-       libraryToolDepends = [ cpphs ];
        executableHaskellDepends = [
          base bytestring cli-setup dependency directory microlens
          optparse-applicative parallel-io shake shake-ats temporary text
@@ -31381,20 +31463,18 @@ self: {
   "avers-server" = callPackage
     ({ mkDerivation, aeson, avers, avers-api, base, base64-bytestring
      , bytestring, bytestring-conversion, containers, cookie, cryptonite
-     , http-types, memory, mtl, resource-pool, rethinkdb-client-driver
-     , servant, servant-server, stm, text, time, transformers, wai
-     , wai-websockets, websockets
+     , http-types, memory, mtl, resource-pool, servant, servant-server
+     , stm, text, time, transformers, wai, wai-websockets, websockets
      }:
      mkDerivation {
        pname = "avers-server";
-       version = "0.1.0";
-       sha256 = "0m809p50l1bfhnmbwl3ncav8lz7xh38yakqa35z65afb6k1g900z";
+       version = "0.1.0.1";
+       sha256 = "13jic248m2307r84acv4b4xlh7pvx4kxm6gp0nhvz1ds0bbrdkdy";
        libraryHaskellDepends = [
          aeson avers avers-api base base64-bytestring bytestring
          bytestring-conversion containers cookie cryptonite http-types
-         memory mtl resource-pool rethinkdb-client-driver servant
-         servant-server stm text time transformers wai wai-websockets
-         websockets
+         memory mtl resource-pool servant servant-server stm text time
+         transformers wai wai-websockets websockets
        ];
        description = "Server implementation of the Avers API";
        license = stdenv.lib.licenses.mit;
@@ -32227,25 +32307,22 @@ self: {
      }:
      mkDerivation {
        pname = "axel";
-       version = "0.0.6";
-       sha256 = "17601gv4rjdxmg2qqp2y9b5lk9ia0z1izhympmwf6zs7wkjs6fyh";
-       revision = "2";
-       editedCabalFile = "12m24klalqxpglh9slhr65sxqd4dsqcaz2abmw29cki0cz6x29dp";
+       version = "0.0.8";
+       sha256 = "16fkrc87yirzha3fgdcbidi7k9xkmb5y5w1i4i10rlikhszfr2b9";
        isLibrary = true;
        isExecutable = true;
        enableSeparateDataOutput = true;
        libraryHaskellDepends = [
          base bytestring directory filepath freer-simple haskell-src-exts
          lens lens-aeson optparse-applicative parsec process regex-pcre
-         singletons strict text typed-process vector yaml
+         singletons strict template-haskell text typed-process vector yaml
        ];
        executableHaskellDepends = [
          base freer-simple optparse-applicative
        ];
        testHaskellDepends = [
          base bytestring filepath freer-simple hedgehog lens split tasty
-         tasty-discover tasty-golden tasty-hedgehog tasty-hspec
-         template-haskell transformers
+         tasty-discover tasty-golden tasty-hedgehog tasty-hspec transformers
        ];
        testToolDepends = [ tasty-discover ];
        description = "The Axel programming language";
@@ -32404,8 +32481,8 @@ self: {
        pname = "b-tree";
        version = "0.1.3";
        sha256 = "0r1bgcjsykd9qzzr6chxw8bfnmvk32p9663j6h11wmq6nq7nrlkb";
-       revision = "2";
-       editedCabalFile = "04is4fc308f1achbdxvqq9rg4v8c02f1w88wysp318dbhhmwgggh";
+       revision = "3";
+       editedCabalFile = "1i9qadxdq215j6dimyrmdkzl3d95l4gb65d2visf8rq1jfmdz62n";
        libraryHaskellDepends = [
          base binary bytestring containers directory errors exceptions
          filepath lens mmap mtl pipes pipes-interleave transformers vector
@@ -33484,6 +33561,8 @@ self: {
        pname = "basic-sop";
        version = "0.2.0.2";
        sha256 = "0cd5zlv3w3r99ck5cz43kppand0n9vx26g4d4fqqcmvjxk8zwhy7";
+       revision = "1";
+       editedCabalFile = "0rvhcbywgpidnq1vg79a9scq6hraqdyv67j63vyidm0q20ml5mpv";
        libraryHaskellDepends = [
          base deepseq generics-sop QuickCheck text
        ];
@@ -34050,20 +34129,18 @@ self: {
      }) {};
 
   "bed-and-breakfast" = callPackage
-    ({ mkDerivation, array, base, binary, deepseq, QuickCheck
+    ({ mkDerivation, array, base, binary, cpphs, deepseq, QuickCheck
      , template-haskell
      }:
      mkDerivation {
        pname = "bed-and-breakfast";
-       version = "0.4.3";
-       sha256 = "0183770vkb5r9srxqr3fa4s601g10bx07b05hjr3b3nvc0ab9f6z";
-       revision = "1";
-       editedCabalFile = "0kqdmq6y2fgbknx2lsn1jx2g2n7yizdpzn6wvnnvjaqi945yvyry";
+       version = "0.5";
+       sha256 = "0dj1vvb9j55psp6yra72wk0k3k6ggvarmzj7zjgr8z3npv5mqmar";
        libraryHaskellDepends = [
-         array base binary deepseq template-haskell
+         array base binary cpphs deepseq template-haskell
        ];
        testHaskellDepends = [ base QuickCheck ];
-       description = "Efficient Matrix operations in 100% Haskell";
+       description = "Efficient Matrix and Vector operations in 100% Haskell";
        license = stdenv.lib.licenses.mit;
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
@@ -34186,8 +34263,8 @@ self: {
      }:
      mkDerivation {
        pname = "bench-show";
-       version = "0.2.1";
-       sha256 = "1afx5vck4b57r6kanr5g46rk5n8hf9vw4vg2sfqgdb3fhc9979g5";
+       version = "0.2.2";
+       sha256 = "12fi59j9a98n4q6gjvjsf0hjc2rsy33b7kzjiqxy5wzh8isciaa4";
        libraryHaskellDepends = [
          ansi-wl-pprint base Chart Chart-diagrams csv directory filepath
          mwc-random split statistics transformers vector
@@ -35247,6 +35324,8 @@ self: {
        pname = "binary-tagged";
        version = "0.1.5.1";
        sha256 = "196msm7v0r41d7gx8aghl0c1gvir60sf0w9sfpcz2dq9akzqzjvh";
+       revision = "1";
+       editedCabalFile = "1z612d3wbrlywcx96lc52svi9b2s6nskdnwnwm3d5mylcqaqckcx";
        libraryHaskellDepends = [
          aeson array base base16-bytestring binary bytestring containers
          generics-sop hashable scientific SHA tagged text time
@@ -37134,6 +37213,8 @@ self: {
        pname = "bitwise";
        version = "1.0.0.1";
        sha256 = "03xyzdkyb99gvm9g5chl07rqbnm7qrxba7wgmrfmal0rkwm0ibkn";
+       revision = "1";
+       editedCabalFile = "1h6dbjmznd3pvz7j5f8xwaaxxhx57fxszli2k430wcn65bc9y0zs";
        libraryHaskellDepends = [ array base bytestring ];
        testHaskellDepends = [ base QuickCheck ];
        benchmarkHaskellDepends = [ array base bytestring criterion ];
@@ -37165,13 +37246,15 @@ self: {
      }) {};
 
   "bizzlelude" = callPackage
-    ({ mkDerivation, base-noprelude, containers, directory, text }:
+    ({ mkDerivation, base-noprelude, containers, directory, regexpr
+     , text
+     }:
      mkDerivation {
        pname = "bizzlelude";
-       version = "1.2.0";
-       sha256 = "1yqp46blrllx5irn1vvvx1v2n06pdfdfmhcng8hvs7q43fcsfgcr";
+       version = "1.5.0";
+       sha256 = "1mjy5hlszj85wvxwr7fza5wa004xjcg434kwzxzjmmlcvkgh2ybr";
        libraryHaskellDepends = [
-         base-noprelude containers directory text
+         base-noprelude containers directory regexpr text
        ];
        description = "A lousy Prelude replacement by a lousy dude";
        license = stdenv.lib.licenses.bsd3;
@@ -38777,8 +38860,8 @@ self: {
        pname = "boring";
        version = "0.1";
        sha256 = "0r263cc8bdwsaw33x96fgd8npsma9a2ffv6mfz9z72d7qclhimkk";
-       revision = "1";
-       editedCabalFile = "0hdvr4rkkj2mapqha335rhncfmrw70qzjmfis2w9l4iqx617fv9m";
+       revision = "2";
+       editedCabalFile = "1jxaby4cagbhii194x9x0j75ms1v5bm14sx7d19zz3844mh9qyci";
        libraryHaskellDepends = [
          adjunctions base base-compat constraints fin generics-sop streams
          tagged transformers transformers-compat vec
@@ -39207,6 +39290,8 @@ self: {
        pname = "brick";
        version = "0.41.2";
        sha256 = "04b4gyzb0c66idl19k0v3g9z48bcii728ivbpvm8zjkzq2m2hqix";
+       revision = "1";
+       editedCabalFile = "00z07bkarxqv517aq95gib864z9mrq9j86zh6jdxybf2v4fwh04s";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -39797,6 +39882,20 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "btrfs_0_2_0_0" = callPackage
+    ({ mkDerivation, base, bytestring, time, unix }:
+     mkDerivation {
+       pname = "btrfs";
+       version = "0.2.0.0";
+       sha256 = "1h56yb4a3i1c452splxj06c8harrcws2pg86rx7jz6b804ncrzr2";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [ base bytestring time unix ];
+       description = "Bindings to the btrfs API";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "buchhaltung" = callPackage
     ({ mkDerivation, aeson, ansi-wl-pprint, array, async, base, boxes
      , bytestring, cassava, containers, data-default, Decimal, deepseq
@@ -41402,8 +41501,8 @@ self: {
      }:
      mkDerivation {
        pname = "cabal-debian";
-       version = "4.38.1";
-       sha256 = "1sniyy2pappjjhvw1bma593gxdcjlg3j2afx8jgb70h6cbl3769n";
+       version = "4.38.2";
+       sha256 = "1hr2y1jymi835pwm17z4fc0r58fkx3h8vxb03qp4fiadily0lg3s";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -42016,10 +42115,8 @@ self: {
     ({ mkDerivation, base, Cabal, QuickCheck }:
      mkDerivation {
        pname = "cabal-test-quickcheck";
-       version = "0.1.8.1";
-       sha256 = "0r5fd670a5ch0lzw7wsxp6k06wzi64wvjbiy8zyfl7brmjnbh8gn";
-       revision = "1";
-       editedCabalFile = "1rq6l86sndcv8nb5nl9rki2kmblrarj9cbra0i6kixa5n1wbcmv6";
+       version = "0.1.8.2";
+       sha256 = "04fdfxvgp518x7n6d74l92qh67z94pay4wldy8dv4n51zhkgk8bf";
        libraryHaskellDepends = [ base Cabal QuickCheck ];
        description = "QuickCheck for Cabal";
        license = stdenv.lib.licenses.mit;
@@ -42509,10 +42606,8 @@ self: {
      }:
      mkDerivation {
        pname = "cacophony";
-       version = "0.10.0";
-       sha256 = "1hjxzpbnp5qzbjl9m0hyvlr7yflfgxr5kqbviamhpgc0lj5igizv";
-       revision = "2";
-       editedCabalFile = "0w7nq4c5i89vmslxhvzw8299gig2wrr0ayddqjk5dxghmmly3hdw";
+       version = "0.10.1";
+       sha256 = "1w9v04mdyzvwndqfb8my9a82b51avgwfnl6g7w89xj37ax9ariaj";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -42968,6 +43063,26 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "canonical-json" = callPackage
+    ({ mkDerivation, aeson, base, bytestring, containers, parsec
+     , pretty, QuickCheck, tasty, tasty-quickcheck, unordered-containers
+     , vector
+     }:
+     mkDerivation {
+       pname = "canonical-json";
+       version = "0.5.0.1";
+       sha256 = "1r52f69afsnl6kmn0h2rl6wp21jjain4kz6123a1haacfm2f2hwj";
+       libraryHaskellDepends = [
+         base bytestring containers parsec pretty
+       ];
+       testHaskellDepends = [
+         aeson base bytestring QuickCheck tasty tasty-quickcheck
+         unordered-containers vector
+       ];
+       description = "Canonical JSON for signing and hashing JSON values";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "canteven-config" = callPackage
     ({ mkDerivation, base, unix, yaml }:
      mkDerivation {
@@ -43179,6 +43294,8 @@ self: {
        pname = "capnp";
        version = "0.3.0.0";
        sha256 = "17i7m168bqp57m5lb04sbfh2amc1sicv2jajkl61jb1gsidwdkrz";
+       revision = "1";
+       editedCabalFile = "0faisbw98h1zjsqja57c0xac6hhnhb4sghzh9a3225pp8wxnbjr7";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -47213,8 +47330,8 @@ self: {
      }:
      mkDerivation {
        pname = "clckwrks";
-       version = "0.24.0.7";
-       sha256 = "1czalrr7y3526jb4cgi8bghxghqwsjwkfhm5vb4q19xzqg3kjqwy";
+       version = "0.24.0.8";
+       sha256 = "1csiak0i3aaz56f64509w49q4j21cb10zlxdx8lyhbm8aikva0n1";
        enableSeparateDataOutput = true;
        setupHaskellDepends = [ base Cabal ];
        libraryHaskellDepends = [
@@ -47385,8 +47502,8 @@ self: {
      }:
      mkDerivation {
        pname = "clckwrks-plugin-page";
-       version = "0.4.3.12";
-       sha256 = "0xndx7843laiha1n8xscq13dv6x6fv098v1cdmmzx7qnvfvhhlxj";
+       version = "0.4.3.13";
+       sha256 = "0fkfsi9hv0hv4zbv2znb0v30z5qvifgmz9875868va0830nv3ibh";
        setupHaskellDepends = [ base Cabal ];
        libraryHaskellDepends = [
          acid-state aeson attoparsec base clckwrks containers directory
@@ -49568,19 +49685,21 @@ self: {
      }) {};
 
   "combinat" = callPackage
-    ({ mkDerivation, array, base, containers, QuickCheck, random
-     , test-framework, test-framework-quickcheck2, transformers
+    ({ mkDerivation, array, base, containers, QuickCheck, random, tasty
+     , tasty-hunit, tasty-quickcheck, test-framework
+     , test-framework-quickcheck2, transformers
      }:
      mkDerivation {
        pname = "combinat";
-       version = "0.2.8.2";
-       sha256 = "0i7hk8518ixwxvxgy9xbf9hcyfpvmcfgz5m3wbxzcj5ry4rnnhnh";
+       version = "0.2.9.0";
+       sha256 = "1y617qyhqh2k6d51j94c0xnj54i7b86d87n0j12idxlkaiv4j5sw";
        libraryHaskellDepends = [
          array base containers random transformers
        ];
        testHaskellDepends = [
-         array base containers QuickCheck random test-framework
-         test-framework-quickcheck2 transformers
+         array base containers QuickCheck random tasty tasty-hunit
+         tasty-quickcheck test-framework test-framework-quickcheck2
+         transformers
        ];
        description = "Generate and manipulate various combinatorial objects";
        license = stdenv.lib.licenses.bsd3;
@@ -49707,15 +49826,16 @@ self: {
      }) {};
 
   "comfort-array" = callPackage
-    ({ mkDerivation, base, guarded-allocation, QuickCheck, transformers
-     , utility-ht
+    ({ mkDerivation, base, guarded-allocation, primitive, QuickCheck
+     , storable-record, transformers, utility-ht
      }:
      mkDerivation {
        pname = "comfort-array";
-       version = "0.1.1";
-       sha256 = "0kmqb7mcanx3n597nm8p6g76nc4v5smkl5srjmb2757fb3w68xmk";
+       version = "0.1.2";
+       sha256 = "1rc8gfgjid10wajjk5pp1vmm8wc2apr5qcr2w41pwk25m554iyz1";
        libraryHaskellDepends = [
-         base guarded-allocation QuickCheck transformers utility-ht
+         base guarded-allocation primitive QuickCheck storable-record
+         transformers utility-ht
        ];
        testHaskellDepends = [ base QuickCheck ];
        description = "Arrays where the index type is a function of the shape type";
@@ -50267,8 +50387,8 @@ self: {
        pname = "complex-generic";
        version = "0.1.1.1";
        sha256 = "03wb599difj0qm1dpzgxdymq3bql69qmkdk5fspcyc19nnd5qlqz";
-       revision = "2";
-       editedCabalFile = "160lw045p7j5vm4j2sqqfpnfgkxkil2kwjnmi7x6am03gfi9g9kw";
+       revision = "3";
+       editedCabalFile = "0vm0i25bib0bzlw7fw209pqn3963y5hx0vkri049q4v7y0qld8k9";
        libraryHaskellDepends = [ base template-haskell ];
        description = "complex numbers with non-mandatory RealFloat";
        license = stdenv.lib.licenses.bsd3;
@@ -50548,12 +50668,12 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
-  "composition-prelude_2_0_0_0" = callPackage
+  "composition-prelude_2_0_1_0" = callPackage
     ({ mkDerivation, base }:
      mkDerivation {
        pname = "composition-prelude";
-       version = "2.0.0.0";
-       sha256 = "0kz0jr5pfy6d1pm8sbxzrp0h7bnaljspggmzz382p6xp4npr6pg5";
+       version = "2.0.1.0";
+       sha256 = "027fzappyma8hqqkqka21af937h57fdaq8ni73skxa03pcflwqmc";
        libraryHaskellDepends = [ base ];
        description = "Higher-order function combinators";
        license = stdenv.lib.licenses.bsd3;
@@ -50790,8 +50910,8 @@ self: {
      }:
      mkDerivation {
        pname = "concraft";
-       version = "0.14.1";
-       sha256 = "0v7han8ps1ysxi929clkbx0c0vjd6dyxxhfp8q5k2jx58blwzxyg";
+       version = "0.14.2";
+       sha256 = "151cp99iah0fd50fkizidcla7f1kvb0jwgl1cj3j6f25j21894dy";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -50837,8 +50957,8 @@ self: {
      }:
      mkDerivation {
        pname = "concraft-pl";
-       version = "2.1.1";
-       sha256 = "1fznivcsgyjhb62jzk9a3wsv8rmynr7y7473ldbqypkjgy2rmvf2";
+       version = "2.4.0";
+       sha256 = "0gc50aadzryy1a8mj85i4afgip34w6pk4s2kqsn10910634lmy6h";
        isLibrary = true;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -51158,8 +51278,8 @@ self: {
     ({ mkDerivation, base }:
      mkDerivation {
        pname = "concurrent-split";
-       version = "0.0.1";
-       sha256 = "1rxq0l513mldz7rlpmpac7n6mipk4lciv58h77h0zypixy73qyb0";
+       version = "0.0.1.1";
+       sha256 = "0i9gak7q3ay8g1kzq7dg0bs36bg88n7kwy3h1r6jrni7mz7jh05f";
        libraryHaskellDepends = [ base ];
        description = "MVars and Channels with distinguished input and output side";
        license = stdenv.lib.licenses.bsd3;
@@ -51818,8 +51938,8 @@ self: {
      }:
      mkDerivation {
        pname = "confcrypt";
-       version = "0.1.0.2";
-       sha256 = "0iw47xz34f2dljsq6hm75046sy7wmzj4ndgfh9h3x4iixs5vidfw";
+       version = "0.1.0.3";
+       sha256 = "0fj40m3yncrwb3z2dznvls17v40xm1kh0i4ig16mpb9qj7ww8chl";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -52026,6 +52146,8 @@ self: {
        pname = "config-value-getopt";
        version = "0.1.1.0";
        sha256 = "0ypg8wl17vqdqsk1gpaba11v63xmqysfp4cd4ii8zha7pfmlhb4c";
+       revision = "1";
+       editedCabalFile = "1vdm5pgql8cggdkqxhc2z0cg2s7xayghdm51k0m3lx9396f5pxm8";
        libraryHaskellDepends = [ base config-value text ];
        description = "Interface between config-value and System.GetOpt";
        license = stdenv.lib.licenses.mit;
@@ -54857,8 +54979,8 @@ self: {
      }:
      mkDerivation {
        pname = "crf-chain1-constrained";
-       version = "0.5.0";
-       sha256 = "194mcafkf23lifmx2n2hnvsaxl0mfdl9zgl9awigddwxvpxsrmjq";
+       version = "0.6.0";
+       sha256 = "0yzwvzknn0qd8d2b0fqk1lznz8fplv6gx8x5hlmhqmi2f625yav7";
        libraryHaskellDepends = [
          array base binary containers data-lens data-memocombinators
          logfloat monad-codec parallel pedestrian-dag random sgd vector
@@ -54894,8 +55016,8 @@ self: {
      }:
      mkDerivation {
        pname = "crf-chain2-tiers";
-       version = "0.5.0";
-       sha256 = "1gwfkvs9lc7ni68n2mxrqx0haawnc8dwx0b73q7a75ysx538f84x";
+       version = "0.6.0";
+       sha256 = "14vn96vq7ck9xs1gnjmsxi6hr8mlpa6vbr53v2v4lmbav29jqrhr";
        libraryHaskellDepends = [
          array base binary comonad containers data-lens data-memocombinators
          logfloat monad-codec parallel pedestrian-dag sgd vector
@@ -56497,6 +56619,29 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "cuckoo-filter" = callPackage
+    ({ mkDerivation, aeson, base, cereal, containers, criterion
+     , hashable, QuickCheck, random, tasty, tasty-hunit
+     , tasty-quickcheck
+     }:
+     mkDerivation {
+       pname = "cuckoo-filter";
+       version = "0.1.0.2";
+       sha256 = "16ql9qvf1qsbnk1wxy3d5iqyk0kyx9w27vq284gr34yqd18dpvk5";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [ aeson base cereal containers hashable ];
+       executableHaskellDepends = [
+         aeson base cereal containers criterion hashable random
+       ];
+       testHaskellDepends = [
+         aeson base cereal containers hashable QuickCheck tasty tasty-hunit
+         tasty-quickcheck
+       ];
+       description = "Pure and impure Cuckoo Filter";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
   "cuda" = callPackage
     ({ mkDerivation, base, bytestring, c2hs, Cabal, directory, filepath
      , pretty, template-haskell, uuid-types
@@ -57115,8 +57260,8 @@ self: {
     ({ mkDerivation, base, doctest, template-haskell }:
      mkDerivation {
        pname = "d10";
-       version = "0.1.0.0";
-       sha256 = "0ymhfarhsryqw0h6nksz9ki640b3xa1613k40hp85mk4rqir0zjq";
+       version = "0.2.1.0";
+       sha256 = "0dbz1lil7qm0qnn1y5kakh6nyyc3jkv00125vfp9nk2n25yckb9z";
        libraryHaskellDepends = [ base template-haskell ];
        testHaskellDepends = [ base doctest ];
        description = "Digits 0-9";
@@ -59289,8 +59434,8 @@ self: {
     ({ mkDerivation, base, pretty, syb }:
      mkDerivation {
        pname = "data-tree-print";
-       version = "0.1.0.1";
-       sha256 = "1zh1akyf8vvsqq39vrbn95v5md5in9fvzmz2jz79adh3w5wc5j6f";
+       version = "0.1.0.2";
+       sha256 = "00jh37anim8qsn553467gmfhajcz1c61zrgh1ypkqsll0gc29vy3";
        libraryHaskellDepends = [ base pretty syb ];
        description = "Print Data instances as a nested tree";
        license = stdenv.lib.licenses.bsd3;
@@ -60634,8 +60779,8 @@ self: {
     ({ mkDerivation, base, singletons }:
      mkDerivation {
        pname = "decidable";
-       version = "0.1.2.0";
-       sha256 = "1dgxkwdazqdlnc6pvqwkx531xajl4ygjm5315dz9ilacgbbl2qss";
+       version = "0.1.4.0";
+       sha256 = "07cw2jhvii3prsbczxpmq7g492wc89yxp77ivs01gp3bl7m25cky";
        libraryHaskellDepends = [ base singletons ];
        description = "Combinators for manipulating dependently-typed predicates";
        license = stdenv.lib.licenses.bsd3;
@@ -65978,6 +66123,58 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "docusign-base" = callPackage
+    ({ mkDerivation, aeson, base, bytestring, data-default, http-media
+     , lens, servant, servant-client, text
+     }:
+     mkDerivation {
+       pname = "docusign-base";
+       version = "0.0.1";
+       sha256 = "1qh1g8nyj606x0vapv6m07dhm4s3g5z17g1i4wk5bj63vxvms528";
+       libraryHaskellDepends = [
+         aeson base bytestring data-default http-media lens servant
+         servant-client text
+       ];
+       description = "Low-level bindings to the DocuSign API";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
+  "docusign-client" = callPackage
+    ({ mkDerivation, aeson, base, base64-bytestring, bytestring
+     , data-default, docusign-base, exceptions, http-client
+     , http-client-tls, http-types, servant-client, text, uuid
+     }:
+     mkDerivation {
+       pname = "docusign-client";
+       version = "0.0.1";
+       sha256 = "1vyb7n08vqjmc18adbs6ck01q5440a0r99ahb566v427mr9hcydg";
+       libraryHaskellDepends = [
+         aeson base base64-bytestring bytestring data-default docusign-base
+         exceptions http-client http-client-tls http-types servant-client
+         text uuid
+       ];
+       description = "Client bindings for the DocuSign API";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
+  "docusign-example" = callPackage
+    ({ mkDerivation, base, bytestring, docusign-base, docusign-client
+     , exceptions, filepath, optparse-generic, text, uuid
+     }:
+     mkDerivation {
+       pname = "docusign-example";
+       version = "0.1.0.0";
+       sha256 = "0fhyzmgdjq5rds0p0gifwg6pfsq17yyhj4nwvi6zpgzmww4vya21";
+       isLibrary = false;
+       isExecutable = true;
+       executableHaskellDepends = [
+         base bytestring docusign-base docusign-client exceptions filepath
+         optparse-generic text uuid
+       ];
+       description = "DocuSign examples";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "docvim" = callPackage
     ({ mkDerivation, base, bytestring, containers, deepseq, directory
      , dlist, filepath, hlint, lens, mtl, optparse-applicative, parsec
@@ -68004,8 +68201,8 @@ self: {
      }:
      mkDerivation {
        pname = "easytest";
-       version = "0.2";
-       sha256 = "1sd9w5p6z9mmvxid6svmnh7h43r32mrcqilb8k7kiy36ln3n8j0b";
+       version = "0.2.1";
+       sha256 = "0gdyawzlw6d15yz7ji599xjgfr0g7l1iq11ffr4aw3j6g3dc6m8i";
        libraryHaskellDepends = [
          async base call-stack containers mtl random stm text transformers
        ];
@@ -68920,8 +69117,8 @@ self: {
        pname = "ekg-core";
        version = "0.1.1.4";
        sha256 = "0dz9iv6viya7b5nx9gxj9g0d1k155pvb7i59azf9272wl369mn36";
-       revision = "2";
-       editedCabalFile = "1jky0jf6ajan5zmb46d6p4lv7293kc5gw1bcq5av733g10cwrbdk";
+       revision = "3";
+       editedCabalFile = "1s3545x9w01rrwzchb4f91ck0n6dc7gf0zwkryqx1b2c95ni5qa8";
        libraryHaskellDepends = [
          base containers ghc-prim text unordered-containers
        ];
@@ -70223,8 +70420,8 @@ self: {
      }:
      mkDerivation {
        pname = "entwine";
-       version = "0.0.1";
-       sha256 = "08yy72lgc8cg12hbz51q06zx7fslhhnk0rjjszba8aj0qbrj8yr4";
+       version = "0.0.2";
+       sha256 = "08y5vxg6q5f7dakclap86i68if18srzl6q3a9hg7qyrrq6jlyv63";
        libraryHaskellDepends = [
          async base containers exceptions monad-loops SafeSemaphore stm text
          time transformers transformers-either
@@ -70259,6 +70456,17 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "enum-types" = callPackage
+    ({ mkDerivation, base }:
+     mkDerivation {
+       pname = "enum-types";
+       version = "0.1.0.0";
+       sha256 = "18qiq6nnnd1c5lkvjafsqd4ypa4xpmx99diq82dz5wy2h95ci2ri";
+       libraryHaskellDepends = [ base ];
+       description = "small enum types";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "enumerable" = callPackage
     ({ mkDerivation, base, control-monad-omega, tagged }:
      mkDerivation {
@@ -70502,6 +70710,27 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "envstatus" = callPackage
+    ({ mkDerivation, base, ConfigFile, mtl, parsec, process, PyF, tasty
+     , tasty-hspec, unix
+     }:
+     mkDerivation {
+       pname = "envstatus";
+       version = "1.0.2";
+       sha256 = "1wdvhlmqwzwxv0y3n8xhw5yjy158c7xgiyd0p2zhjghws2p1jvp5";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         base ConfigFile mtl parsec process unix
+       ];
+       executableHaskellDepends = [ base ];
+       testHaskellDepends = [
+         base ConfigFile parsec PyF tasty tasty-hspec
+       ];
+       description = "Display efficiently the state of the local environment";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
   "envy" = callPackage
     ({ mkDerivation, base, bytestring, containers, hspec, mtl
      , QuickCheck, quickcheck-instances, text, time, transformers
@@ -72528,8 +72757,8 @@ self: {
      }:
      mkDerivation {
        pname = "exhaustive";
-       version = "1.1.6";
-       sha256 = "00gdgr9xqzy14sqx31j4afljvfc4ar2jrzmwpp3z6ybfq1saw7vk";
+       version = "1.1.7";
+       sha256 = "02kv3vv7gz8lqwm5iz4nddyzxp17cgsb6j12lc5kf51l481vpb1z";
        libraryHaskellDepends = [
          base generics-sop template-haskell transformers
        ];
@@ -72833,8 +73062,8 @@ self: {
        pname = "exp-extended";
        version = "0.1.1.2";
        sha256 = "0ymfnwq103n1paj6wl2cj6szi5nx2h2j1azy3wy4kkw6sk07m00r";
-       revision = "2";
-       editedCabalFile = "050v0c9l9gi1bxpqbfcl2j9mdiv7xdh1mdfwymxcgpjydv60xwh0";
+       revision = "3";
+       editedCabalFile = "0gd1jwhhj5qjvfysvrm41zywx3cq6n131ym2x94z68cpswdmv0qn";
        libraryHaskellDepends = [ base compensated log-domain ];
        description = "floating point with extended exponent range";
        license = stdenv.lib.licenses.bsd3;
@@ -73318,13 +73547,16 @@ self: {
      }:
      mkDerivation {
        pname = "extensible-effects-concurrent";
-       version = "0.6.2";
-       sha256 = "11cqk78c0lfsa8mkq7ymxsral0g24p1im4r1ndqsf7rxczjmc37c";
+       version = "0.8";
+       sha256 = "17xag4qcdgv7fihyigmi48kf4mb9f3dbxqlh7a7s1xqdfh9l6mc2";
+       isLibrary = true;
+       isExecutable = true;
        libraryHaskellDepends = [
          base containers data-default deepseq directory extensible-effects
          filepath lens logging-effect monad-control mtl parallel process
          QuickCheck random stm tagged time transformers
        ];
+       executableHaskellDepends = [ base extensible-effects ];
        testHaskellDepends = [
          base containers deepseq extensible-effects HUnit lens QuickCheck
          stm tasty tasty-discover tasty-hunit
@@ -77275,21 +77507,21 @@ self: {
 
   "fltkhs" = callPackage
     ({ mkDerivation, base, bytestring, c2hs, Cabal, directory, filepath
-     , mtl, parsec, text
+     , mtl, parsec, pkg-config, text, vector
      }:
      mkDerivation {
        pname = "fltkhs";
-       version = "0.5.4.5";
-       sha256 = "17iqpnn0zgwifb937kllkfyz8qf37da90z8iyay348gy3siwjxic";
+       version = "0.6.0.0";
+       sha256 = "1cbyp8rq9yzx6jrw68dbprkdyd8pkdqbxx08wajyg7bfks6j39cb";
        isLibrary = true;
        isExecutable = true;
        setupHaskellDepends = [ base Cabal directory filepath ];
-       libraryHaskellDepends = [ base bytestring text ];
-       libraryToolDepends = [ c2hs ];
+       libraryHaskellDepends = [ base bytestring text vector ];
+       libraryToolDepends = [ c2hs pkg-config ];
        executableHaskellDepends = [ base directory filepath mtl parsec ];
        description = "FLTK bindings";
        license = stdenv.lib.licenses.mit;
-     }) {};
+     }) {pkg-config = null;};
 
   "fltkhs-demos" = callPackage
     ({ mkDerivation, base, bytestring, directory, fltkhs, process, stm
@@ -77349,6 +77581,24 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "fltkhs-themes" = callPackage
+    ({ mkDerivation, base, bytestring, Cabal, fltkhs, fontconfig
+     , load-font, text, vector
+     }:
+     mkDerivation {
+       pname = "fltkhs-themes";
+       version = "0.1.0.1";
+       sha256 = "03awhraincinrqr1zzb9c64mkb391isw3gb87csa1dkqk846wij6";
+       enableSeparateDataOutput = true;
+       setupHaskellDepends = [ base Cabal ];
+       libraryHaskellDepends = [
+         base bytestring fltkhs load-font text vector
+       ];
+       librarySystemDepends = [ fontconfig ];
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {inherit (pkgs) fontconfig;};
+
   "fluent-logger" = callPackage
     ({ mkDerivation, attoparsec, base, bytestring, cereal
      , cereal-conduit, conduit, conduit-extra, containers, criterion
@@ -77540,10 +77790,8 @@ self: {
      }:
      mkDerivation {
        pname = "fmt";
-       version = "0.6";
-       sha256 = "14hk6ra8j1zzw7ibimj207mi1xl5pmln6kyz0y66j4bg1r8invsy";
-       revision = "1";
-       editedCabalFile = "0xmi4qxq12qfj4ry1ifb0za7jdlvj65v16bzdqi8r7p1xrxy5cki";
+       version = "0.6.1";
+       sha256 = "1c6a0nrm90drs13s1hry9xs8j7dx37j21f7kllpx5s240nqy4c6c";
        libraryHaskellDepends = [
          base base64-bytestring bytestring containers formatting microlens
          text time time-locale-compat
@@ -79289,6 +79537,32 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "freer-simple_1_2_0_0" = callPackage
+    ({ mkDerivation, base, criterion, extensible-effects, free, mtl
+     , natural-transformation, QuickCheck, tasty, tasty-hunit
+     , tasty-quickcheck, template-haskell, transformers-base
+     }:
+     mkDerivation {
+       pname = "freer-simple";
+       version = "1.2.0.0";
+       sha256 = "1z0f0m03szzcy1s6msqdlaj266dq0bkkwlwcr7p28xv7lj6gxgdb";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         base natural-transformation template-haskell transformers-base
+       ];
+       executableHaskellDepends = [ base ];
+       testHaskellDepends = [
+         base QuickCheck tasty tasty-hunit tasty-quickcheck
+       ];
+       benchmarkHaskellDepends = [
+         base criterion extensible-effects free mtl
+       ];
+       description = "Implementation of a friendly effect system for Haskell";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "freesect" = callPackage
     ({ mkDerivation, array, base, cpphs, directory, mtl, parallel
      , pretty, random, syb
@@ -80487,6 +80761,19 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "fused-effects" = callPackage
+    ({ mkDerivation, base, deepseq, doctest, hspec, MonadRandom, random
+     }:
+     mkDerivation {
+       pname = "fused-effects";
+       version = "0.1.1.0";
+       sha256 = "1wcrixfpz0q93xskb90p8a2jypsghbpgwn4fjy6k1ad4ihxn19hl";
+       libraryHaskellDepends = [ base deepseq MonadRandom random ];
+       testHaskellDepends = [ base doctest hspec ];
+       description = "A fast, flexible, fused effect system";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "fusion" = callPackage
     ({ mkDerivation, base, directory, doctest, filepath, pipes-safe
      , transformers, void
@@ -80502,6 +80789,62 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "futhark" = callPackage
+    ({ mkDerivation, aeson, alex, ansi-terminal, array, base
+     , bifunctors, binary, blaze-html, bytestring, containers
+     , data-binary-ieee754, directory, directory-tree, dlist, extra
+     , file-embed, filepath, free, gitrev, happy, haskeline, http-client
+     , http-client-tls, http-conduit, HUnit, language-c-quote
+     , mainland-pretty, markdown, megaparsec, mtl, neat-interpolation
+     , parallel, parser-combinators, process, process-extras, QuickCheck
+     , random, raw-strings-qq, regex-tdfa, srcloc, tasty, tasty-hunit
+     , tasty-quickcheck, template-haskell, temporary, text
+     , th-lift-instances, time, transformers, vector
+     , vector-binary-instances, versions, zip-archive, zlib
+     }:
+     mkDerivation {
+       pname = "futhark";
+       version = "0.7.4";
+       sha256 = "1qjcza0i0y6qalyim5kclz3x4lj667d4d4y2amk3sn4qbgaibajs";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         ansi-terminal array base bifunctors binary blaze-html bytestring
+         containers data-binary-ieee754 directory directory-tree dlist extra
+         file-embed filepath free gitrev http-client http-client-tls
+         http-conduit language-c-quote mainland-pretty markdown megaparsec
+         mtl neat-interpolation parallel parser-combinators process
+         process-extras raw-strings-qq regex-tdfa srcloc template-haskell
+         text th-lift-instances time transformers vector
+         vector-binary-instances versions zip-archive zlib
+       ];
+       libraryToolDepends = [ alex happy ];
+       executableHaskellDepends = [
+         aeson ansi-terminal array base bifunctors binary blaze-html
+         bytestring containers data-binary-ieee754 directory directory-tree
+         dlist extra file-embed filepath free gitrev haskeline http-client
+         http-client-tls http-conduit language-c-quote mainland-pretty
+         markdown megaparsec mtl neat-interpolation parallel
+         parser-combinators process process-extras random raw-strings-qq
+         regex-tdfa srcloc template-haskell temporary text th-lift-instances
+         time transformers vector vector-binary-instances versions
+         zip-archive zlib
+       ];
+       testHaskellDepends = [
+         ansi-terminal array base bifunctors binary blaze-html bytestring
+         containers data-binary-ieee754 directory directory-tree dlist extra
+         file-embed filepath free gitrev http-client http-client-tls
+         http-conduit HUnit language-c-quote mainland-pretty markdown
+         megaparsec mtl neat-interpolation parallel parser-combinators
+         process process-extras QuickCheck raw-strings-qq regex-tdfa srcloc
+         tasty tasty-hunit tasty-quickcheck template-haskell text
+         th-lift-instances time transformers vector vector-binary-instances
+         versions zip-archive zlib
+       ];
+       description = "An optimising compiler for a functional, array-oriented language";
+       license = stdenv.lib.licenses.isc;
+     }) {};
+
   "futun" = callPackage
     ({ mkDerivation, base, bytestring, network, unix }:
      mkDerivation {
@@ -81949,14 +82292,14 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
-  "generics-sop_0_4_0_0" = callPackage
+  "generics-sop_0_4_0_1" = callPackage
     ({ mkDerivation, base, criterion, deepseq, ghc-prim, sop-core
      , template-haskell
      }:
      mkDerivation {
        pname = "generics-sop";
-       version = "0.4.0.0";
-       sha256 = "0blx09k173qgaghqnsvz6v2r6san1kn62k5c57wilya94l1996ra";
+       version = "0.4.0.1";
+       sha256 = "160knr2phnzh2gldfv954lz029jzc7y8kz5xpmbf4z3vb5ngm6fw";
        libraryHaskellDepends = [
          base ghc-prim sop-core template-haskell
        ];
@@ -81975,8 +82318,8 @@ self: {
        pname = "generics-sop-lens";
        version = "0.1.2.1";
        sha256 = "0p2ji955hy9r6c1wmiziga9pbbli24my3vmx19gf4i8db36d8jaf";
-       revision = "5";
-       editedCabalFile = "1q6953xi46qvbknaq2j8x2zqmk2q1mmf8xczjyib3abxz0rp3608";
+       revision = "6";
+       editedCabalFile = "0j4j3kk2nsl5n5gp0vrzqdc5y9ly31b4nvhq0bpgcpzibvik7ssw";
        libraryHaskellDepends = [ base generics-sop lens ];
        description = "Lenses for types in generics-sop";
        license = stdenv.lib.licenses.bsd3;
@@ -83181,8 +83524,8 @@ self: {
      }:
      mkDerivation {
        pname = "ghc-events";
-       version = "0.8.0";
-       sha256 = "1wdxap20wh8sdaqnpsk463mihg6v3va786zb1amgzrcjpsv49is5";
+       version = "0.8.0.1";
+       sha256 = "1658lr4av48y8m0p5fs3sjxkkbdkwdf6m02byzw69gqg3xzz1i99";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -83265,15 +83608,15 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
-  "ghc-exactprint_0_5_8_1" = callPackage
+  "ghc-exactprint_0_5_8_2" = callPackage
     ({ mkDerivation, base, bytestring, containers, Diff, directory
      , filemanip, filepath, free, ghc, ghc-boot, ghc-paths, HUnit, mtl
      , silently, syb
      }:
      mkDerivation {
        pname = "ghc-exactprint";
-       version = "0.5.8.1";
-       sha256 = "1qjl137f4lpadkgdyfjnkkga8vqyw0x27plpyw57aqhc8qmcylhh";
+       version = "0.5.8.2";
+       sha256 = "18wlhvgpbk7ym1vbi8fkdwbjhcplgr7zcqm328yi4v7rilbxw7cn";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -84904,6 +85247,24 @@ self: {
        license = stdenv.lib.licenses.lgpl21;
      }) {};
 
+  "gi-gtk-hs_0_3_6_3" = callPackage
+    ({ mkDerivation, base, base-compat, containers, gi-gdk
+     , gi-gdkpixbuf, gi-glib, gi-gobject, gi-gtk, haskell-gi-base, mtl
+     , text, transformers
+     }:
+     mkDerivation {
+       pname = "gi-gtk-hs";
+       version = "0.3.6.3";
+       sha256 = "0xnrssnfaz57akrkgpf1cm3d4lg3cmlh0b8yp6w9pdsbp0lld2ay";
+       libraryHaskellDepends = [
+         base base-compat containers gi-gdk gi-gdkpixbuf gi-glib gi-gobject
+         gi-gtk haskell-gi-base mtl text transformers
+       ];
+       description = "A wrapper for gi-gtk, adding a few more idiomatic API parts on top";
+       license = stdenv.lib.licenses.lgpl21;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "gi-gtkosxapplication" = callPackage
     ({ mkDerivation, base, bytestring, Cabal, containers, gi-gdkpixbuf
      , gi-gobject, gi-gtk, gtk-mac-integration-gtk3, haskell-gi
@@ -84968,6 +85329,27 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {inherit (pkgs.gnome3) webkitgtk;};
 
+  "gi-javascriptcore_4_0_16" = callPackage
+    ({ mkDerivation, base, bytestring, Cabal, containers, gi-glib
+     , gi-gobject, haskell-gi, haskell-gi-base, haskell-gi-overloading
+     , text, transformers, webkitgtk
+     }:
+     mkDerivation {
+       pname = "gi-javascriptcore";
+       version = "4.0.16";
+       sha256 = "0kihq9sp42k2k9j8qrwgja62i5pzwhc1z1yy6h19n56aikddfc2z";
+       setupHaskellDepends = [ base Cabal haskell-gi ];
+       libraryHaskellDepends = [
+         base bytestring containers gi-glib gi-gobject haskell-gi
+         haskell-gi-base haskell-gi-overloading text transformers
+       ];
+       libraryPkgconfigDepends = [ webkitgtk ];
+       doHaddock = false;
+       description = "JavaScriptCore bindings";
+       license = stdenv.lib.licenses.lgpl21;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {inherit (pkgs.gnome3) webkitgtk;};
+
   "gi-notify" = callPackage
     ({ mkDerivation, base, bytestring, Cabal, containers, gi-gdkpixbuf
      , gi-glib, gi-gobject, haskell-gi, haskell-gi-base
@@ -85318,18 +85700,19 @@ self: {
      }) {};
 
   "gingersnap" = callPackage
-    ({ mkDerivation, aeson, base, bytestring, http-types
-     , postgresql-simple, resource-pool, snap-core
+    ({ mkDerivation, aeson, base, bytestring, deepseq, http-types
+     , postgresql-simple, resource-pool, snap-core, text, transformers
+     , unordered-containers
      }:
      mkDerivation {
        pname = "gingersnap";
-       version = "0.1.1.0";
-       sha256 = "0aqb9ikh21q13mnwf6vcg6chv73vphyag62zhkd4mkhbnlpr816i";
+       version = "0.2.2.3";
+       sha256 = "1w1ip80w9bc5gj0ws6cvk37648267b4fqmh81h2khn7qhdah74k7";
        libraryHaskellDepends = [
-         aeson base bytestring http-types postgresql-simple resource-pool
-         snap-core
+         aeson base bytestring deepseq http-types postgresql-simple
+         resource-pool snap-core text transformers unordered-containers
        ];
-       description = "snap-core + aeson + postgresql-simple = delicious";
+       description = "Tools for consistent and safe JSON APIs with snap-core and postgresql-simple";
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
@@ -90570,8 +90953,8 @@ self: {
     ({ mkDerivation, base, containers, json, text }:
      mkDerivation {
        pname = "graphql-w-persistent";
-       version = "0.1.0.4";
-       sha256 = "1ivdh8l6snb2d3g1f7fb46fd9fz6ib2i94b1596pmp38hryl8in0";
+       version = "0.1.0.7";
+       sha256 = "13fbx5vzg2fq9883hdf8djbc47lyia6n4sshwz3dhg5bjpni7l1x";
        libraryHaskellDepends = [ base containers json text ];
        description = "Haskell GraphQL query parser-interpreter-data processor";
        license = stdenv.lib.licenses.isc;
@@ -91554,8 +91937,8 @@ self: {
      }:
      mkDerivation {
        pname = "gssapi-wai";
-       version = "0.1.2.2";
-       sha256 = "1fkgsdc4nkxwkhnz3b8rz6zx8jq6325mgniy5h5s3cr7k0kwnv0s";
+       version = "0.1.2.3";
+       sha256 = "08c47zwy4wh1cga5l4brg7dm5nkl7xcsq2rvwdzvmzzxyfg3nnr7";
        libraryHaskellDepends = [
          base base64-bytestring bytestring case-insensitive gssapi
          http-types vault wai wai-extra
@@ -93543,8 +93926,8 @@ self: {
      }:
      mkDerivation {
        pname = "hackage-whatsnew";
-       version = "0.1.1";
-       sha256 = "140qsl0aqw2zg246inijifvcddmirba613as0hrg11hkd52f6fhr";
+       version = "0.1.2";
+       sha256 = "19nk01jqfirvr8c3wy6pacq32v5lzxi735r8i6d23d0vwjfmqxnk";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
@@ -94005,8 +94388,8 @@ self: {
      }:
      mkDerivation {
        pname = "hadolint";
-       version = "1.13.0";
-       sha256 = "1z5qaxslshd1adkhqcpx8m8fs8d3dw4vwbwvsqcpm7gis63qhbqg";
+       version = "1.14.0";
+       sha256 = "0cypqvl04fd0gdakl2kf087fjy6qw968isx2hmli5z5gza18hl0b";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -95403,24 +95786,27 @@ self: {
   "hapistrano" = callPackage
     ({ mkDerivation, aeson, async, base, directory, filepath
      , formatting, gitrev, hspec, mtl, optparse-applicative, path
-     , path-io, process, stm, temporary, time, transformers, yaml
+     , path-io, process, QuickCheck, stm, temporary, time, transformers
+     , yaml
      }:
      mkDerivation {
        pname = "hapistrano";
-       version = "0.3.6.1";
-       sha256 = "0g0i0n952zjvysjrsp4srhqgrq5fyy7kdinixsxazpccf01f229y";
+       version = "0.3.7.0";
+       sha256 = "16d1y3dwbvj76b1yyghvwi4f7wak1dv6l07ymknrbi42ks0w9041";
        isLibrary = true;
        isExecutable = true;
        enableSeparateDataOutput = true;
        libraryHaskellDepends = [
-         base filepath formatting gitrev mtl path process time transformers
+         aeson base filepath formatting gitrev mtl path process time
+         transformers
        ];
        executableHaskellDepends = [
          aeson async base formatting gitrev optparse-applicative path
          path-io stm yaml
        ];
        testHaskellDepends = [
-         base directory filepath hspec mtl path path-io process temporary
+         base directory filepath hspec mtl path path-io process QuickCheck
+         temporary
        ];
        description = "A deployment library for Haskell applications";
        license = stdenv.lib.licenses.mit;
@@ -97937,7 +98323,7 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
-  "haskell-lsp_0_8_0_0" = callPackage
+  "haskell-lsp_0_8_0_1" = callPackage
     ({ mkDerivation, aeson, base, bytestring, containers, data-default
      , directory, filepath, hashable, haskell-lsp-types, hslogger, hspec
      , lens, mtl, network-uri, parsec, sorted-list, stm, text, time
@@ -97945,8 +98331,8 @@ self: {
      }:
      mkDerivation {
        pname = "haskell-lsp";
-       version = "0.8.0.0";
-       sha256 = "04mihj4538pys6v4m3dwijfzcpsv52jizm416rnnwc88gr8q6wkk";
+       version = "0.8.0.1";
+       sha256 = "1lvrqxp6v5xvha88l8r6n86ydvlszzxmi7fazvjxz4bixy9zvw8q";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -98005,15 +98391,15 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
-  "haskell-lsp-types_0_8_0_0" = callPackage
+  "haskell-lsp-types_0_8_0_1" = callPackage
     ({ mkDerivation, aeson, base, bytestring, data-default, filepath
      , hashable, lens, network-uri, scientific, text
      , unordered-containers
      }:
      mkDerivation {
        pname = "haskell-lsp-types";
-       version = "0.8.0.0";
-       sha256 = "11dm7v9rvfig6m40m0np7cs5cfaawwpw67c445dz15vls5pri71n";
+       version = "0.8.0.1";
+       sha256 = "0czh6fqrzzp5xkawwiia5n437pmch41rnkp166lpvglfqg4gx8y8";
        libraryHaskellDepends = [
          aeson base bytestring data-default filepath hashable lens
          network-uri scientific text unordered-containers
@@ -98571,6 +98957,8 @@ self: {
        pname = "haskell-src-meta";
        version = "0.8.0.3";
        sha256 = "08jq156zv4m0fjq6712n99c1jwxnpa6kj6sq8ch0r1l0a1ay6ww4";
+       revision = "2";
+       editedCabalFile = "0dp5v0yd0wgijzaggr22glgjswpa65hy84h8awdzd9d78g2fjz6c";
        libraryHaskellDepends = [
          base haskell-src-exts pretty syb template-haskell th-orphans
        ];
@@ -99832,8 +100220,8 @@ self: {
      }:
      mkDerivation {
        pname = "haskoin-node";
-       version = "0.9.2";
-       sha256 = "1aiqhw7fk6h70ps5svbhhhk577ai0rqk6s4bm00ii4yhnbdrdk60";
+       version = "0.9.3";
+       sha256 = "149k9b11c0dj3qqdbinwqnjxy8bxmc4bk65lfxpic2zy26n46k7q";
        libraryHaskellDepends = [
          base bytestring cereal conduit conduit-extra data-default hashable
          haskoin-core monad-logger mtl network nqe random resourcet
@@ -99895,31 +100283,34 @@ self: {
      }) {};
 
   "haskoin-store" = callPackage
-    ({ mkDerivation, aeson, base, bytestring, cereal, conduit
-     , containers, directory, filepath, haskoin-core, haskoin-node
-     , hspec, http-types, monad-logger, mtl, network, nqe
-     , optparse-applicative, random, rocksdb-haskell, rocksdb-query
-     , scotty, string-conversions, text, time, transformers, unliftio
+    ({ mkDerivation, aeson, base, binary, bytestring, cereal, conduit
+     , containers, data-default, directory, filepath, hashable
+     , haskoin-core, haskoin-node, hspec, http-types, monad-logger, mtl
+     , network, nqe, optparse-applicative, random, rocksdb-haskell
+     , rocksdb-query, scotty, string-conversions, text, time
+     , transformers, unliftio, unordered-containers
      }:
      mkDerivation {
        pname = "haskoin-store";
-       version = "0.2.3";
-       sha256 = "0ywfmqdwvw07gx4a413i0ffsgrq2gfjgpw8a6f78h6idiw69shkw";
+       version = "0.4.2";
+       sha256 = "0fjp566icp76dqhivl9jn3s3k2fvxmjysj4rpmrvwfyzb7snlqvp";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
-         aeson base bytestring cereal conduit containers haskoin-core
-         haskoin-node monad-logger mtl network nqe random rocksdb-haskell
-         rocksdb-query string-conversions text time transformers unliftio
+         aeson base bytestring cereal conduit containers data-default
+         hashable haskoin-core haskoin-node monad-logger mtl network nqe
+         random rocksdb-haskell rocksdb-query string-conversions text time
+         transformers unliftio unordered-containers
        ];
        executableHaskellDepends = [
-         aeson base bytestring conduit directory filepath haskoin-core
-         haskoin-node http-types monad-logger nqe optparse-applicative
-         rocksdb-haskell scotty string-conversions text unliftio
+         aeson base binary bytestring cereal conduit data-default directory
+         filepath haskoin-core haskoin-node http-types monad-logger nqe
+         optparse-applicative rocksdb-haskell scotty string-conversions text
+         transformers unliftio unordered-containers
        ];
        testHaskellDepends = [
-         base haskoin-core haskoin-node hspec monad-logger mtl nqe
-         rocksdb-haskell unliftio
+         base data-default haskoin-core haskoin-node hspec monad-logger mtl
+         nqe rocksdb-haskell transformers unliftio unordered-containers
        ];
        description = "Storage and index for Bitcoin and Bitcoin Cash";
        license = stdenv.lib.licenses.publicDomain;
@@ -100165,6 +100556,33 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "hasktorch-codegen" = callPackage
+    ({ mkDerivation, base, containers, directory, hashable, hspec
+     , hspec-discover, megaparsec, optparse-applicative, pretty-show
+     , QuickCheck, text, unordered-containers
+     }:
+     mkDerivation {
+       pname = "hasktorch-codegen";
+       version = "0.0.1.0";
+       sha256 = "0s48myr8k96kb0mwvfcc9h5razp8y5k8dk987hfg101h2nfz5k10";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         base containers directory hashable megaparsec pretty-show text
+         unordered-containers
+       ];
+       executableHaskellDepends = [
+         base optparse-applicative pretty-show
+       ];
+       testHaskellDepends = [
+         base containers hspec hspec-discover megaparsec pretty-show
+         QuickCheck text
+       ];
+       testToolDepends = [ hspec-discover ];
+       description = "Code generation tools for Hasktorch";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "haskus-binary" = callPackage
     ({ mkDerivation, base, bytestring, cereal, criterion, haskus-utils
      , mtl, QuickCheck, tasty, tasty-quickcheck
@@ -100213,8 +100631,8 @@ self: {
      }:
      mkDerivation {
        pname = "haskus-utils";
-       version = "1.0";
-       sha256 = "1pfjarir86c2sxjh8l0jc7z5acsz8slcwb7imjdxf3dsdiy8swwd";
+       version = "1.1";
+       sha256 = "1grbj23545b7wxxyc4rra681k9c8xg36swlql3rgcr15m61fm647";
        libraryHaskellDepends = [
          base containers extra file-embed haskus-utils-data
          haskus-utils-types haskus-utils-variant list-t mtl
@@ -100233,8 +100651,8 @@ self: {
      }:
      mkDerivation {
        pname = "haskus-utils-data";
-       version = "1.0";
-       sha256 = "007ykjinkxr9kdrk7hl81zndpan60b5l51m32nlj2xv2pjm326z4";
+       version = "1.1";
+       sha256 = "1001apph6i956rkb6dpfhg8cgk870s44jgaaiv8ccxivkv45y7di";
        libraryHaskellDepends = [
          base containers extra haskus-utils-types mtl recursion-schemes
          transformers
@@ -100247,23 +100665,26 @@ self: {
     ({ mkDerivation, base }:
      mkDerivation {
        pname = "haskus-utils-types";
-       version = "1.0";
-       sha256 = "1rxnaw53vfmi3gv8h7j6vw4y4xxnqzwaaasd6x22fm7fzc5q64vf";
+       version = "1.1";
+       sha256 = "1fihf61z5078l73a08fvm5qb67dr3yc32nhgakkldd0fbh7clyrz";
        libraryHaskellDepends = [ base ];
        description = "Haskus utility modules";
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
   "haskus-utils-variant" = callPackage
-    ({ mkDerivation, base, haskus-utils-data, haskus-utils-types }:
+    ({ mkDerivation, base, haskus-utils-data, haskus-utils-types, tasty
+     , tasty-quickcheck, template-haskell
+     }:
      mkDerivation {
        pname = "haskus-utils-variant";
-       version = "1.0";
-       sha256 = "1kkqngvzifxps0hhp49syh2w4an3y4s4nvp3qbh3p00h9dw3hmsn";
+       version = "2.0.1";
+       sha256 = "1rg4m1iq2fnnjxd6vbxsqnv21h8rnqisvxxfhns7hc167aydfwwp";
        libraryHaskellDepends = [
-         base haskus-utils-data haskus-utils-types
+         base haskus-utils-data haskus-utils-types template-haskell
        ];
-       description = "Haskus utility modules";
+       testHaskellDepends = [ base tasty tasty-quickcheck ];
+       description = "Variant and EADT";
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
@@ -102727,17 +103148,18 @@ self: {
 
   "heist" = callPackage
     ({ mkDerivation, aeson, attoparsec, base, bifunctors, blaze-builder
-     , blaze-html, bytestring, containers, criterion, directory
-     , directory-tree, dlist, filepath, hashable, HUnit, lens
-     , lifted-base, map-syntax, monad-control, mtl, process, QuickCheck
-     , random, statistics, test-framework, test-framework-hunit
-     , test-framework-quickcheck2, text, time, transformers
-     , transformers-base, unordered-containers, vector, xmlhtml
+     , blaze-html, bytestring, containers, criterion
+     , criterion-measurement, directory, directory-tree, dlist, filepath
+     , hashable, HUnit, lens, lifted-base, map-syntax, monad-control
+     , mtl, process, QuickCheck, random, statistics, test-framework
+     , test-framework-hunit, test-framework-quickcheck2, text, time
+     , transformers, transformers-base, unordered-containers, vector
+     , xmlhtml
      }:
      mkDerivation {
        pname = "heist";
-       version = "1.1";
-       sha256 = "15hdq3i041ph0ry6f9dn6vx2w9hzgkvi9db4p6cy6czwbp53kjbq";
+       version = "1.1.0.1";
+       sha256 = "1j4h9fwny4hl2m5lgsd257lvm9057fb0hmnaqjw8a9k4hyx7hmqq";
        libraryHaskellDepends = [
          aeson attoparsec base blaze-builder blaze-html bytestring
          containers directory directory-tree dlist filepath hashable
@@ -102754,10 +103176,11 @@ self: {
        ];
        benchmarkHaskellDepends = [
          aeson attoparsec base blaze-builder blaze-html bytestring
-         containers criterion directory directory-tree dlist filepath
-         hashable HUnit lifted-base map-syntax monad-control mtl process
-         random statistics test-framework test-framework-hunit text time
-         transformers transformers-base unordered-containers vector xmlhtml
+         containers criterion criterion-measurement directory directory-tree
+         dlist filepath hashable HUnit lifted-base map-syntax monad-control
+         mtl process random statistics test-framework test-framework-hunit
+         text time transformers transformers-base unordered-containers
+         vector xmlhtml
        ];
        description = "An Haskell template system supporting both HTML5 and XML";
        license = stdenv.lib.licenses.bsd3;
@@ -103599,8 +104022,8 @@ self: {
      }:
      mkDerivation {
        pname = "hevm";
-       version = "0.17";
-       sha256 = "0xp28mm3wxyj3win37nvrjdywkrfzm4l0j441q88bd35vr25yi2k";
+       version = "0.21";
+       sha256 = "0h3d1b2xdd59d3rl1a9ng1hz2hr3g6n1dpak0a4namjlcfxvwwhd";
        isLibrary = true;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -104453,8 +104876,8 @@ self: {
        pname = "hgmp";
        version = "0.1.1";
        sha256 = "1hisbcpz47x2lbqf8vzwis7qw7xhvx22lv7dcyhm9vsmsh5741dr";
-       revision = "2";
-       editedCabalFile = "0v318nifmgqq5jg1d5q0jspfgyqp7cfnkz3ikqaz9xjg8inzl8mr";
+       revision = "3";
+       editedCabalFile = "0z2xbqzyrgm9apy3xl353wgwhbnc3hdb1giw2j6fyvv705fmpb62";
        libraryHaskellDepends = [ base ghc-prim integer-gmp ];
        testHaskellDepends = [ base QuickCheck ];
        description = "Haskell interface to GMP";
@@ -106005,8 +106428,8 @@ self: {
      }:
      mkDerivation {
        pname = "hjugement";
-       version = "2.0.0.20180903";
-       sha256 = "0zvgabj0myn5ssfpj8l50z0jwcrqkfsixdhg1wq916y8ay7yi71n";
+       version = "2.0.0.20181030";
+       sha256 = "063d484ns520prgvb2b1szq33wx569fgbgrzvfrgpfcznra638fi";
        libraryHaskellDepends = [
          base containers hashable unordered-containers
        ];
@@ -107470,8 +107893,8 @@ self: {
      }:
      mkDerivation {
        pname = "hoauth2";
-       version = "1.7.2";
-       sha256 = "0klkgr11p8m03ksrad59pqs0czp6hrgmzxynng4zirbmz643plvf";
+       version = "1.8.0";
+       sha256 = "02pirdgq1l638n126qj6sccfkjc6scxl53m584fxq79gfdwarx2q";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -109144,26 +109567,33 @@ self: {
      }) {};
 
   "hpack-dhall" = callPackage
-    ({ mkDerivation, aeson, base, dhall, dhall-json, hpack, hspec
-     , interpolate, megaparsec, mockery, text, transformers
+    ({ mkDerivation, aeson, aeson-pretty, base, bytestring, Cabal
+     , dhall, dhall-json, Diff, filepath, hpack, megaparsec, microlens
+     , optparse-applicative, prettyprinter, tasty, tasty-golden, text
+     , transformers, utf8-string, yaml
      }:
      mkDerivation {
        pname = "hpack-dhall";
-       version = "0.3.0";
-       sha256 = "0dplb37npz47cxya1c3dnj6bjcnprjph83yifb08a5qf6vnhcjyh";
-       revision = "3";
-       editedCabalFile = "1paz90nmir7hrwp9yf2aair14gyiw8ql7f9vj2ry8r7q00xbpfv2";
-       isLibrary = false;
+       version = "0.4.0";
+       sha256 = "04bjhfc5xqkvp58y28cifsq58l2rbc8xa7ywvzmk9hvw7acbixca";
+       isLibrary = true;
        isExecutable = true;
+       libraryHaskellDepends = [
+         aeson aeson-pretty base bytestring dhall dhall-json filepath hpack
+         megaparsec microlens prettyprinter text transformers yaml
+       ];
        executableHaskellDepends = [
-         aeson base dhall dhall-json hpack megaparsec text transformers
+         aeson aeson-pretty base bytestring dhall dhall-json filepath hpack
+         megaparsec microlens optparse-applicative prettyprinter text
+         transformers yaml
        ];
        testHaskellDepends = [
-         aeson base dhall dhall-json hpack hspec interpolate megaparsec
-         mockery text transformers
+         aeson aeson-pretty base bytestring Cabal dhall dhall-json Diff
+         filepath hpack megaparsec microlens prettyprinter tasty
+         tasty-golden text transformers utf8-string yaml
        ];
-       description = "Dhall support for Hpack";
-       license = stdenv.lib.licenses.publicDomain;
+       description = "hpack's dhalling";
+       license = stdenv.lib.licenses.bsd3;
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
@@ -110630,18 +111060,17 @@ self: {
 
   "hs2ats" = callPackage
     ({ mkDerivation, ansi-wl-pprint, base, casing, composition-prelude
-     , cpphs, criterion, deepseq, haskell-src-exts, hspec
-     , hspec-dirstream, language-ats, microlens, optparse-generic
-     , system-filepath
+     , criterion, deepseq, haskell-src-exts, hspec, hspec-dirstream
+     , language-ats, microlens, optparse-generic, system-filepath
      }:
      mkDerivation {
        pname = "hs2ats";
-       version = "0.3.0.4";
-       sha256 = "1mqm4yblv22368v01xq59ppi4ifjpqlswfirm6n42ckb47xhmy09";
+       version = "0.4.0.0";
+       sha256 = "1564xybdqli5i3096xmccy6z0xgm5yvfmjmz60r9ny3h54ahlj7r";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
-         ansi-wl-pprint base casing composition-prelude cpphs deepseq
+         ansi-wl-pprint base casing composition-prelude deepseq
          haskell-src-exts language-ats microlens
        ];
        executableHaskellDepends = [ base optparse-generic ];
@@ -110716,6 +111145,18 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "hsPID" = callPackage
+    ({ mkDerivation, base, HUnit, lens }:
+     mkDerivation {
+       pname = "hsPID";
+       version = "0.1";
+       sha256 = "16ks8pvpd0rcw11zinzlldv21i6mbcbrnnq3j9z3vmcjpd25wzim";
+       libraryHaskellDepends = [ base lens ];
+       testHaskellDepends = [ base HUnit lens ];
+       description = "PID control loop";
+       license = stdenv.lib.licenses.lgpl3;
+     }) {};
+
   "hsSqlite3" = callPackage
     ({ mkDerivation, base, bindings-sqlite3, bytestring, mtl
      , utf8-string
@@ -111908,6 +112349,24 @@ self: {
        license = stdenv.lib.licenses.isc;
      }) {};
 
+  "hsinstall_2_1" = callPackage
+    ({ mkDerivation, base, Cabal, directory, filepath, heredoc, process
+     }:
+     mkDerivation {
+       pname = "hsinstall";
+       version = "2.1";
+       sha256 = "1azbzkslszq9pw4h91mp1zr6g6ad2haaf3g5146naf1f456z9zjg";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [ base directory filepath ];
+       executableHaskellDepends = [
+         base Cabal directory filepath heredoc process
+       ];
+       description = "Install Haskell software";
+       license = stdenv.lib.licenses.isc;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "hskeleton" = callPackage
     ({ mkDerivation, base, Cabal }:
      mkDerivation {
@@ -115002,6 +115461,26 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "http-client-openssl_0_3_0_0" = callPackage
+    ({ mkDerivation, base, bytestring, HsOpenSSL, hspec, http-client
+     , http-types, network
+     }:
+     mkDerivation {
+       pname = "http-client-openssl";
+       version = "0.3.0.0";
+       sha256 = "0y7d1bp045mj1lnbd74a1v4viv5g5awivdhbycq75hnvqf2n50vl";
+       libraryHaskellDepends = [
+         base bytestring HsOpenSSL http-client network
+       ];
+       testHaskellDepends = [
+         base HsOpenSSL hspec http-client http-types
+       ];
+       doCheck = false;
+       description = "http-client backend using the OpenSSL library";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "http-client-request-modifiers" = callPackage
     ({ mkDerivation, base, bytestring, exceptions, http-client
      , http-media, http-types, network, network-uri
@@ -115766,16 +116245,45 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "http2_1_6_4" = callPackage
+    ({ mkDerivation, aeson, aeson-pretty, array, base, bytestring
+     , case-insensitive, containers, criterion, directory, doctest
+     , filepath, Glob, heaps, hex, hspec, mwc-random, network-byte-order
+     , psqueues, stm, text, unordered-containers, vector, word8
+     }:
+     mkDerivation {
+       pname = "http2";
+       version = "1.6.4";
+       sha256 = "0rhy7z67bmbb15kxq9fmpgvqmc3npsbf1ym04cg07ymq9ihxvjig";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         array base bytestring case-insensitive containers
+         network-byte-order psqueues stm
+       ];
+       testHaskellDepends = [
+         aeson aeson-pretty array base bytestring case-insensitive
+         containers directory doctest filepath Glob hex hspec
+         network-byte-order psqueues stm text unordered-containers vector
+         word8
+       ];
+       benchmarkHaskellDepends = [
+         array base bytestring case-insensitive containers criterion heaps
+         mwc-random network-byte-order psqueues stm
+       ];
+       description = "HTTP/2 library including frames, priority queues and HPACK";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "http2-client" = callPackage
     ({ mkDerivation, async, base, bytestring, containers, deepseq
      , http2, network, stm, time, tls
      }:
      mkDerivation {
        pname = "http2-client";
-       version = "0.8.0.1";
-       sha256 = "055x0cscrd0idfda4ak48dagkmqkgj1zg29mz4yxrdj9vp2n0xd3";
-       revision = "1";
-       editedCabalFile = "190dhnj34b9xnpf6d3lj5a1fr90k2dy1l1i8505mp49lxzdvzkgc";
+       version = "0.8.0.2";
+       sha256 = "16m4amw7xq7psvxix76z7g1dvllkfs9pzpnig5rfhbgfvbf5pydw";
        libraryHaskellDepends = [
          async base bytestring containers deepseq http2 network stm time tls
        ];
@@ -115790,8 +116298,8 @@ self: {
      }:
      mkDerivation {
        pname = "http2-client-exe";
-       version = "0.1.0.0";
-       sha256 = "0i8rnq01dlnj7yzf64b7g7cshzsbxc668m9fhc97x3hbdr7b0iad";
+       version = "0.1.0.1";
+       sha256 = "1z1y52253dybliwplybwd71a1ssmma34zcylv54aj6x7grrj37hm";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
@@ -116801,14 +117309,14 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
-  "hw-ip_0_4_1" = callPackage
+  "hw-ip_0_4_2" = callPackage
     ({ mkDerivation, attoparsec, base, generic-lens, hedgehog, hspec
      , hw-bits, hw-hspec-hedgehog, text
      }:
      mkDerivation {
        pname = "hw-ip";
-       version = "0.4.1";
-       sha256 = "0kql3qvav2r0fsppiqa40s95938gfzkal5bkli3rhjiknj3vhbg7";
+       version = "0.4.2";
+       sha256 = "1jcfj75hlg7szvknw6v13barvcilldzh76jv1rnfyscrfhpdkd2s";
        libraryHaskellDepends = [
          attoparsec base generic-lens hw-bits text
        ];
@@ -117216,6 +117724,32 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "hw-streams" = callPackage
+    ({ mkDerivation, base, bytestring, criterion, directory, exceptions
+     , ghc-prim, hedgehog, hspec, hw-bits, hw-hspec-hedgehog, hw-prim
+     , mmap, primitive, QuickCheck, semigroups, transformers, vector
+     }:
+     mkDerivation {
+       pname = "hw-streams";
+       version = "0.0.0.4";
+       sha256 = "08dmcbvw3z53plzgq5z3pa9ns9rjj0xs9rx70pyfrqrrc2f98hwi";
+       libraryHaskellDepends = [
+         base bytestring ghc-prim hw-bits hw-prim mmap primitive semigroups
+         transformers vector
+       ];
+       testHaskellDepends = [
+         base bytestring directory exceptions ghc-prim hedgehog hspec
+         hw-bits hw-hspec-hedgehog hw-prim mmap primitive QuickCheck
+         semigroups transformers vector
+       ];
+       benchmarkHaskellDepends = [
+         base bytestring criterion ghc-prim hw-bits hw-prim mmap primitive
+         semigroups transformers vector
+       ];
+       description = "Primitive functions and data types";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "hw-string-parse" = callPackage
     ({ mkDerivation, base, bytestring, hspec, QuickCheck, vector }:
      mkDerivation {
@@ -118992,8 +119526,8 @@ self: {
      }:
      mkDerivation {
        pname = "idris";
-       version = "1.3.0";
-       sha256 = "1w5i2z88li4niykwc6yrgxgfp25ll6ih95cip0ri7d8i7ik03c48";
+       version = "1.3.1";
+       sha256 = "0fn9h58l592j72njwma1ia48h8h87wi2rjqfxs7j2lfmvgfv18fi";
        configureFlags = [ "-fcurses" "-fexeconly" "-fffi" "-fgmp" ];
        isLibrary = true;
        isExecutable = true;
@@ -120855,6 +121389,17 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "initialize" = callPackage
+    ({ mkDerivation, base }:
+     mkDerivation {
+       pname = "initialize";
+       version = "0.1.1.0";
+       sha256 = "0k3bl5adj512bzqysapnggvf6fmi0hs3mvxkymsh9af7gan8y504";
+       libraryHaskellDepends = [ base ];
+       description = "Initialization and Deinitialization of 'Storable' values";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "inj" = callPackage
     ({ mkDerivation }:
      mkDerivation {
@@ -120980,8 +121525,8 @@ self: {
      }:
      mkDerivation {
        pname = "inline-c-cpp";
-       version = "0.2.2.1";
-       sha256 = "1rk7fmpkmxw9hhwr8df29kadnf0ybnwj64ggdbnsdrpfyhnkisci";
+       version = "0.3.0.1";
+       sha256 = "00q4f2rv6ny5cnfyfdwqvmngw2w40jfs5zb1x7zs574w4l31g701";
        libraryHaskellDepends = [
          base inline-c safe-exceptions template-haskell
        ];
@@ -124566,6 +125111,18 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "jmonkey" = callPackage
+    ({ mkDerivation, base, casing, free, jmacro }:
+     mkDerivation {
+       pname = "jmonkey";
+       version = "0.1.0.1";
+       sha256 = "1yhmhaa8ykjv3xivd7v10q3zw3pvgf45jk5wsbrr95s2p806n5nf";
+       libraryHaskellDepends = [ base casing free jmacro ];
+       testHaskellDepends = [ base casing free jmacro ];
+       description = "Jmonkey is very restricted but handy EDSL for JavaScript";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
   "jni" = callPackage
     ({ mkDerivation, base, bytestring, choice, constraints, containers
      , cpphs, deepseq, inline-c, jdk, singletons
@@ -125477,8 +126034,8 @@ self: {
        pname = "json-rpc-client";
        version = "0.2.5.0";
        sha256 = "177lrw5m9dxdk6mcay0f92rwyih8q7znwb8m6da6r3zsn30gajak";
-       revision = "8";
-       editedCabalFile = "04dqdn9gdw5xgkm4cnzsph57xcjc01rm1fdfwcfdzg71mbyf8f7y";
+       revision = "9";
+       editedCabalFile = "04b65m8lhk2g2d5x5i637ff3wkgvf4z6dhn5x1pizsj9y3aq35zm";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -125523,8 +126080,8 @@ self: {
        pname = "json-rpc-server";
        version = "0.2.6.0";
        sha256 = "1xfcxbwri9a5p3xxbc4kvr1kqdnm4c1axd8kgb8dglabffbrk7hn";
-       revision = "5";
-       editedCabalFile = "0hvkfbgg3jbgs0d2jp5djhpd2qp3q9hs5cr4ds93bc9nyncymyq9";
+       revision = "6";
+       editedCabalFile = "1rfabr679pk605v141gm0ynbp3l6x87s3ip3wa49lwnpab495mxs";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -125571,8 +126128,8 @@ self: {
        pname = "json-sop";
        version = "0.2.0.3";
        sha256 = "0ay2cymy4aar23cixcyqam91bs9x4z0vqiw2k0nvgy9nyqfz2r9h";
-       revision = "1";
-       editedCabalFile = "1bvmfl6fqdr8fklv8zai5jgzlnv1jf9xy8i656lfz1ys95q9yr48";
+       revision = "2";
+       editedCabalFile = "1lclvvcfvicr05v2nf1xkf21qry2g2bqjhd7gfhza89d571aq3gp";
        libraryHaskellDepends = [
          aeson base generics-sop lens-sop tagged text time transformers
          unordered-containers vector
@@ -127791,6 +128348,28 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "kind-apply" = callPackage
+    ({ mkDerivation, base }:
+     mkDerivation {
+       pname = "kind-apply";
+       version = "0.1.0.0";
+       sha256 = "0n2picf38cxfgsi76372h6d25s5kvc32qw7514b2i4ald6qh8aip";
+       libraryHaskellDepends = [ base ];
+       description = "Utilities to work with lists of types";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
+  "kind-generics" = callPackage
+    ({ mkDerivation, base, kind-apply }:
+     mkDerivation {
+       pname = "kind-generics";
+       version = "0.1.0.0";
+       sha256 = "1h6pb14b75lphlxzz7q08ihvg2phh082sx6a2zpdk5gwh8qzihpg";
+       libraryHaskellDepends = [ base kind-apply ];
+       description = "Generic programming in GHC style for arbitrary kinds and GADTs";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "kinds" = callPackage
     ({ mkDerivation, base }:
      mkDerivation {
@@ -128657,8 +129236,8 @@ self: {
      }:
      mkDerivation {
        pname = "lambdabot";
-       version = "5.1.0.2";
-       sha256 = "1nzjlxyzrri8zw67flqn1arz10mgbmyglhvf6pg4r8w78iwg5nk3";
+       version = "5.1.0.4";
+       sha256 = "1pywangzqf85pqhh5sn10vpk0wrd7ff5p29jrsi6sxdz5lyb7svk";
        isLibrary = false;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -128682,8 +129261,8 @@ self: {
      }:
      mkDerivation {
        pname = "lambdabot-core";
-       version = "5.1.0.2";
-       sha256 = "1n0cqkbiadc169vq7pj5zwvi3yay6db60q8pdk4kci0s9clz4161";
+       version = "5.1.0.4";
+       sha256 = "1cnp0w47fp0s1zlyb0d90xj5ynwfmlnzm5inc5lhbichwgqcwfzk";
        libraryHaskellDepends = [
          base binary bytestring containers dependent-map dependent-sum
          dependent-sum-template directory edit-distance filepath haskeline
@@ -128708,8 +129287,8 @@ self: {
      }:
      mkDerivation {
        pname = "lambdabot-haskell-plugins";
-       version = "5.1.0.3";
-       sha256 = "1hka7kb2j5nqzv9jljjyylfyrf5z3hsfp2sfgv95y5qsr2b6g96a";
+       version = "5.1.0.4";
+       sha256 = "19fl14c1j7p9qaf26g1qkmxvmw9r7hvxqmp9jxmmwbp7xlc3664v";
        libraryHaskellDepends = [
          array arrows base bytestring containers data-memocombinators
          directory filepath haskell-src-exts-simple hoogle HTTP IOSpec
@@ -128729,8 +129308,8 @@ self: {
      }:
      mkDerivation {
        pname = "lambdabot-irc-plugins";
-       version = "5.1.0.1";
-       sha256 = "1axixb6q5j7vs93q9d3n5v7l57nvnbjpry1ww8vaqlm71m1z4l2f";
+       version = "5.1.0.4";
+       sha256 = "0kscksdqjysk9amxwb1xjh475pbwq22mf9as5kqwn72c8s75ngaf";
        libraryHaskellDepends = [
          base bytestring containers directory filepath lambdabot-core
          lifted-base mtl network SafeSemaphore split time
@@ -128749,8 +129328,8 @@ self: {
      }:
      mkDerivation {
        pname = "lambdabot-misc-plugins";
-       version = "5.1.0.1";
-       sha256 = "1bg15z7k21l0dwnkvprxvx5jcvs5igl8fqffg11y7h0r74f4yhks";
+       version = "5.1.0.4";
+       sha256 = "169grwgg5x63qhls16c7xd0p78da38r275mar27il78az7qfgn8d";
        libraryHaskellDepends = [
          base bytestring containers filepath hstatsd lambdabot-core
          lifted-base mtl network network-uri parsec process random random-fu
@@ -128769,8 +129348,8 @@ self: {
      }:
      mkDerivation {
        pname = "lambdabot-novelty-plugins";
-       version = "5.1.0.1";
-       sha256 = "1ispnp12i2f8fcs11nay3mww8sa6dwx7lkl6d6gc9cfhzgwih6gi";
+       version = "5.1.0.4";
+       sha256 = "1m6n0asp8pn12wif5jv0nvjipzgh7mzzxa17j4mzd7mdqi4dma7z";
        libraryHaskellDepends = [
          base binary brainfuck bytestring containers dice directory
          lambdabot-core misfortune process random-fu regex-tdfa unlambda
@@ -128786,8 +129365,8 @@ self: {
      }:
      mkDerivation {
        pname = "lambdabot-reference-plugins";
-       version = "5.1.0.1";
-       sha256 = "0s5923hsl1pzyayi4954livp4rsgx84slwpnr7mq8nhfsdxm84wp";
+       version = "5.1.0.4";
+       sha256 = "0qavp784p5qdb2plhhgk1idrjxcazzn4a94pg8syymb24fzjvm1w";
        libraryHaskellDepends = [
          base bytestring containers HTTP lambdabot-core mtl network
          network-uri oeis process regex-tdfa split tagsoup utf8-string
@@ -128802,8 +129381,8 @@ self: {
      }:
      mkDerivation {
        pname = "lambdabot-social-plugins";
-       version = "5.1.0.1";
-       sha256 = "1p46qyb2x7h37xs9y69k1mc5v84rwvkrgkdwkl4cw6pmnkmjnl42";
+       version = "5.1.0.4";
+       sha256 = "0kjjsnrrsrcdvkn75dsbw7afx8y87i36i6lk54hs6cg88zndailz";
        libraryHaskellDepends = [
          base binary bytestring containers lambdabot-core mtl split time
        ];
@@ -128815,8 +129394,8 @@ self: {
     ({ mkDerivation, base, oeis, QuickCheck, QuickCheck-safe }:
      mkDerivation {
        pname = "lambdabot-trusted";
-       version = "5.1.0.1";
-       sha256 = "11qvpxgv4xbs8iw0lix8mdj174dzj0gwgny7vgvs4vd9pi37sb7r";
+       version = "5.1.0.4";
+       sha256 = "1mlyhxc93d3466xhxqlyzg1c8988spzbyk4d5l0c05l1m0xlq77j";
        libraryHaskellDepends = [ base oeis QuickCheck QuickCheck-safe ];
        description = "Lambdabot trusted code";
        license = "GPL";
@@ -129355,6 +129934,8 @@ self: {
        pname = "language-c-quote";
        version = "0.12.2";
        sha256 = "15c6rdj91768jf8lqzf4fkbi8k6kz9gch5w81x6qzy2l256rncgb";
+       revision = "1";
+       editedCabalFile = "099w1lln1vm000sf06wrmq6gya5sx2w4flrlwqz2c8wwvv8c9j9h";
        libraryHaskellDepends = [
          array base bytestring containers exception-mtl
          exception-transformers filepath haskell-src-meta mainland-pretty
@@ -129453,15 +130034,15 @@ self: {
        license = stdenv.lib.licenses.gpl3;
      }) {};
 
-  "language-docker_7_0_0" = callPackage
+  "language-docker_8_0_0" = callPackage
     ({ mkDerivation, base, bytestring, containers, directory, filepath
      , free, Glob, hspec, HUnit, megaparsec, mtl, prettyprinter, process
      , QuickCheck, split, template-haskell, text, th-lift, time
      }:
      mkDerivation {
        pname = "language-docker";
-       version = "7.0.0";
-       sha256 = "0c63la3739fbcf50vy1cp245fk7x723gviyykd3dmggm1jwgm515";
+       version = "8.0.0";
+       sha256 = "00zryknsc0717ysq8g1ip5dm70v8b33lfrscbzpdcw5dd2j32k7n";
        libraryHaskellDepends = [
          base bytestring containers free megaparsec mtl prettyprinter split
          template-haskell text th-lift time
@@ -131171,6 +131752,17 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "leancheck-enum-instances" = callPackage
+    ({ mkDerivation, base, enum-types, leancheck }:
+     mkDerivation {
+       pname = "leancheck-enum-instances";
+       version = "0.1.0.0";
+       sha256 = "0l14npnkwdr3vcdjv2b20a0g3cka0nd93cm6hrq16dcphm1ckaj1";
+       libraryHaskellDepends = [ base enum-types leancheck ];
+       description = "listable instances for small enum types";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "leankit-api" = callPackage
     ({ mkDerivation, aeson, base, bytestring, colour, curl, split }:
      mkDerivation {
@@ -131801,6 +132393,8 @@ self: {
        pname = "lens-sop";
        version = "0.2.0.2";
        sha256 = "16bd95cwqiprz55s5272mv6wiw5pmv6mvihviiwbdbilhq400s3z";
+       revision = "1";
+       editedCabalFile = "0k7xdwj64kd56kjh7ghjwm79rjwjqxlw5nwzwj0cq5q56vb340jm";
        libraryHaskellDepends = [
          base fclabels generics-sop transformers
        ];
@@ -131862,6 +132456,17 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "lens-typelevel" = callPackage
+    ({ mkDerivation, base, singletons }:
+     mkDerivation {
+       pname = "lens-typelevel";
+       version = "0.1.1.0";
+       sha256 = "0lsdp6rgacsa13fppa2dfn2nz8cdrvj5clmlshzrv1h0423hfgbp";
+       libraryHaskellDepends = [ base singletons ];
+       description = "Type-level lenses using singletons";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "lens-utils" = callPackage
     ({ mkDerivation, aeson, base, containers, data-default, lens
      , monoid, split, template-haskell
@@ -131924,8 +132529,8 @@ self: {
      }:
      mkDerivation {
        pname = "lentil";
-       version = "1.0.11.3";
-       sha256 = "0kb9fydcv0skp94bhvhbqggam8vrq2wv5iradxmggaf41h0ly123";
+       version = "1.1.0.0";
+       sha256 = "0qw6nvhlczqywwzinsj0x5p2xw8490bbizl2lmj48dr71mndxdz0";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
@@ -132573,8 +133178,8 @@ self: {
      }:
      mkDerivation {
        pname = "libmpd";
-       version = "0.9.0.8";
-       sha256 = "0kpdj4ciwrfd6vmr60y7c276h5z2r40avs26a0x8s51rbr00lasq";
+       version = "0.9.0.9";
+       sha256 = "1931m23iqb4wddpdidm4ph746zpaw41kkjzmb074j7yyfpk7x1jv";
        libraryHaskellDepends = [
          attoparsec base bytestring containers data-default-class filepath
          mtl network old-locale text time utf8-string
@@ -135055,6 +135660,8 @@ self: {
        pname = "llvm-hs";
        version = "7.0.1";
        sha256 = "1ghgmmks22ra6ivhwhy65yj9ihr51lbhwdghm52pna5f14brhlyy";
+       revision = "1";
+       editedCabalFile = "0nxyjcnsph4mlyxqy47m67ayd4mnpxx3agy5vx7f4v74bg4xx44a";
        setupHaskellDepends = [ base Cabal containers ];
        libraryHaskellDepends = [
          array attoparsec base bytestring containers exceptions llvm-hs-pure
@@ -136448,6 +137055,8 @@ self: {
        pname = "long-double";
        version = "0.1";
        sha256 = "072yfv1kv83k8qc9apks2czr9p6znk46bbbjmsdbcpzyb8byh64j";
+       revision = "1";
+       editedCabalFile = "12vmzzrxgb4yqf9axf1fildl4m0dfm3zqxk4vg6k6m5qi6haz1yn";
        libraryHaskellDepends = [ base integer-gmp ];
        description = "FFI bindings for C long double";
        license = stdenv.lib.licenses.bsd3;
@@ -137910,8 +138519,8 @@ self: {
      }:
      mkDerivation {
        pname = "magic-wormhole";
-       version = "0.1.0";
-       sha256 = "0lkwnbr76chiakc7j51pm23q15q26l3xqglg1rj5blwybkymg29x";
+       version = "0.2.1";
+       sha256 = "1wdn5nykn4wqb65xdhkpy8gpz216a5wi3nngadf58c7acym60gyx";
        isLibrary = true;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -138204,6 +138813,8 @@ self: {
        pname = "mainland-pretty";
        version = "0.7";
        sha256 = "1xzavchbp345a63i24hs8632l3xk0c1pxqd32b2i6615cp9pnxqi";
+       revision = "1";
+       editedCabalFile = "1apyqnbcsbjfkqc1d6mk74pxl12130r6ijwhj555gddls9g0qdf3";
        libraryHaskellDepends = [
          base containers srcloc text transformers
        ];
@@ -140205,8 +140816,8 @@ self: {
        pname = "mcm";
        version = "0.6.5.0";
        sha256 = "1vf54aziyybxyc9bwnn57pfcjmgli2hjjd2kzij8vy2g64ipip9m";
-       revision = "1";
-       editedCabalFile = "1anhhrl8a627y7vfvcmiwbfjiyvglwrqcim1gc6zycqidyqq22pq";
+       revision = "2";
+       editedCabalFile = "0xgnh356qwc1zdailqr3m6hbv7q5gc36ycqfz31z6l5kphmbblsc";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
@@ -141399,6 +142010,54 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "metar" = callPackage
+    ({ mkDerivation, base, checkers, deriving-compat, HTTP, lens
+     , network-uri, QuickCheck, semigroupoids, semigroups, tagsoup
+     , tagsoup-selection, tasty, tasty-hunit, tasty-quickcheck
+     , transformers
+     }:
+     mkDerivation {
+       pname = "metar";
+       version = "0.0.2";
+       sha256 = "1iaqjzy1a7hkvcni6ijkwwcsb433j3gkx9f7z8ng1yhlbcr9a556";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         base deriving-compat HTTP lens network-uri semigroupoids semigroups
+         tagsoup tagsoup-selection transformers
+       ];
+       executableHaskellDepends = [ base ];
+       testHaskellDepends = [
+         base checkers lens QuickCheck tasty tasty-hunit tasty-quickcheck
+       ];
+       description = "Australian METAR";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
+  "metar-http" = callPackage
+    ({ mkDerivation, base, checkers, http-types, lens, metar
+     , network-uri, QuickCheck, semigroupoids, semigroups, tasty
+     , tasty-hunit, tasty-quickcheck, text, transformers, utf8-string
+     , wai, warp
+     }:
+     mkDerivation {
+       pname = "metar-http";
+       version = "0.0.1";
+       sha256 = "0xpi9x1c05py659a94ldksn3z5xz9ws069gp1swam1fllg8xbxj6";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         base http-types lens metar network-uri semigroupoids semigroups
+         text transformers utf8-string wai warp
+       ];
+       executableHaskellDepends = [ base ];
+       testHaskellDepends = [
+         base checkers lens QuickCheck tasty tasty-hunit tasty-quickcheck
+       ];
+       description = "HTTP for METAR";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "metric" = callPackage
     ({ mkDerivation, base, data-default, edit-distance, hmatrix
      , QuickCheck, test-framework, test-framework-quickcheck2, vector
@@ -145900,8 +146559,8 @@ self: {
      }:
      mkDerivation {
        pname = "mpi-hs";
-       version = "0.3.0.0";
-       sha256 = "1a8vlsrpvgyzq4p0qa90l4ck3v9a0pncy9bmmn6kjf6j2wa5j9qx";
+       version = "0.3.1.0";
+       sha256 = "1ka212z51ga82fwjj6jz6aiidn4fyvf0b5p9xma67fnv9a7cs4v2";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [ base bytestring monad-loops store ];
@@ -146972,10 +147631,8 @@ self: {
     ({ mkDerivation, base, containers, deepseq, doctest, Glob }:
      mkDerivation {
        pname = "multiset";
-       version = "0.3.4";
-       sha256 = "0kdmf0ba946pxq1m8q0x5bk2my2fd5frhaw3cj2i3x88nc9f0ycp";
-       revision = "1";
-       editedCabalFile = "0m7xk2217a5zpwb1hwp5j5r6yzlf0f4lmlnln2lb9bqihjl3j9x8";
+       version = "0.3.4.1";
+       sha256 = "05iynv54mgfwil7l81ni8mrhhb5vz3fdls13vm2m3dnwqgp7vzxh";
        libraryHaskellDepends = [ base containers deepseq ];
        testHaskellDepends = [ base doctest Glob ];
        description = "The Data.MultiSet container type";
@@ -148100,6 +148757,30 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "mysql-haskell_0_8_4_1" = callPackage
+    ({ mkDerivation, base, binary, binary-ieee754, binary-parsers
+     , blaze-textual, bytestring, bytestring-lexing, cryptonite
+     , io-streams, memory, monad-loops, network, scientific, tasty
+     , tasty-hunit, tcp-streams, text, time, tls, vector, wire-streams
+     , word24
+     }:
+     mkDerivation {
+       pname = "mysql-haskell";
+       version = "0.8.4.1";
+       sha256 = "0m3kqm5ldy47gv0gbh3sxv2zm4kmszw96r5sar5bzb3v9jvmz94x";
+       libraryHaskellDepends = [
+         base binary binary-ieee754 binary-parsers blaze-textual bytestring
+         bytestring-lexing cryptonite io-streams memory monad-loops network
+         scientific tcp-streams text time tls vector wire-streams word24
+       ];
+       testHaskellDepends = [
+         base bytestring io-streams tasty tasty-hunit text time vector
+       ];
+       description = "pure haskell MySQL driver";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "mysql-haskell-nem" = callPackage
     ({ mkDerivation, base, bytestring, io-streams, mysql-haskell
      , scientific, text, time
@@ -150082,6 +150763,18 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "network-byte-order" = callPackage
+    ({ mkDerivation, base, bytestring, doctest }:
+     mkDerivation {
+       pname = "network-byte-order";
+       version = "0.0.0.0";
+       sha256 = "0wfy57ip87ksppggpz26grk4w144yld95mf2y0c6mhcs1l8z3div";
+       libraryHaskellDepends = [ base bytestring ];
+       testHaskellDepends = [ base bytestring doctest ];
+       description = "Network byte order utilities";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "network-bytestring" = callPackage
     ({ mkDerivation, base, bytestring, network, unix }:
      mkDerivation {
@@ -150098,8 +150791,8 @@ self: {
     ({ mkDerivation, base, bytestring, network, text, time, vector }:
      mkDerivation {
        pname = "network-carbon";
-       version = "1.0.13";
-       sha256 = "06cc62fns07flmsl9gbdicmqqg5icmy3m4n0nvp2xqjk1ax8ws39";
+       version = "1.0.14";
+       sha256 = "1jrmda71gkcpppzv8s44kms4vz4zj7yb67wyr882s2b4hcf4il5b";
        libraryHaskellDepends = [
          base bytestring network text time vector
        ];
@@ -151198,8 +151891,8 @@ self: {
      }:
      mkDerivation {
        pname = "ngx-export-tools";
-       version = "0.1.2.0";
-       sha256 = "0vkcgj8y4jh63nwh0djxfjvkbpa66zpf32y5912lwj7xf6rm769q";
+       version = "0.2.1.0";
+       sha256 = "1xavggdab7khi8isvrcf85xlrxhy852fb2ccj7jhmdnfmqzbzyyq";
        libraryHaskellDepends = [
          aeson base binary bytestring ngx-export safe template-haskell
        ];
@@ -151434,18 +152127,18 @@ self: {
      }) {};
 
   "nix-deploy" = callPackage
-    ({ mkDerivation, base, neat-interpolation, optparse-applicative
-     , optparse-generic, text, turtle
+    ({ mkDerivation, base, bytestring, neat-interpolation
+     , optparse-applicative, optparse-generic, text, turtle
      }:
      mkDerivation {
        pname = "nix-deploy";
-       version = "1.0.2";
-       sha256 = "07cirn4gaaarw5va128f63jp2q7jlghmg4kclya4fvapx963qbya";
+       version = "1.0.3";
+       sha256 = "0anhmc9g9k40nwj87f24hq4wnj6mkli36dzhzdpa0p3cpg7sh2kh";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
-         base neat-interpolation optparse-applicative optparse-generic text
-         turtle
+         base bytestring neat-interpolation optparse-applicative
+         optparse-generic text turtle
        ];
        description = "Deploy Nix-built software to a NixOS machine";
        license = stdenv.lib.licenses.asl20;
@@ -153011,16 +153704,18 @@ self: {
 
   "nuxeo" = callPackage
     ({ mkDerivation, attoparsec, base, bytestring, conduit
-     , conduit-extra, text, time
+     , conduit-extra, optparse-applicative, text, time
      }:
      mkDerivation {
        pname = "nuxeo";
-       version = "0.2.0.3";
-       sha256 = "1assz03rv0vdbgl2ihcr7sbx7ifsv7m2mp6lg2jgy5h0ghnlwzcd";
+       version = "0.3.0.2";
+       sha256 = "1h0asiqlffy0wy76q2dz7id6nzsid5nqkmsy1mxdl77zm3d9id4f";
+       isLibrary = true;
+       isExecutable = true;
        libraryHaskellDepends = [
          attoparsec base bytestring conduit conduit-extra text time
        ];
-       description = "Nuxeo";
+       executableHaskellDepends = [ base optparse-applicative text ];
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
@@ -154181,20 +154876,21 @@ self: {
     ({ mkDerivation, aeson, base, base16-bytestring, bytestring
      , case-insensitive, containers, contravariant, dotenv, hspec
      , hspec-discover, multiset, postgresql-simple, pretty
-     , product-profunctors, profunctors, QuickCheck, semigroups, text
-     , time, time-locale-compat, transformers, uuid, void
+     , product-profunctors, profunctors, QuickCheck, scientific
+     , semigroups, text, time, time-locale-compat, transformers, uuid
+     , void
      }:
      mkDerivation {
        pname = "opaleye";
-       version = "0.6.1.0";
-       sha256 = "0vjiwpdrff4nrs5ww8q3j77ysrq0if20yfk4gy182lr7nzhhwz0l";
-       revision = "2";
-       editedCabalFile = "07yn6xzynvjz9p6mv9kzh1sz05dqqsmihznba8s9q36lixlslyag";
+       version = "0.6.7003.1";
+       sha256 = "1lj4vz1526l11b0mc5y7j9sxf7v6kkzl8c1jymvb1vrqj2qkgxsx";
+       revision = "1";
+       editedCabalFile = "0nwyz9s81hfziwy7a18gpi0663xy6cfc6fl4vx8a1vkwdyfcjjli";
        libraryHaskellDepends = [
          aeson base base16-bytestring bytestring case-insensitive
          contravariant postgresql-simple pretty product-profunctors
-         profunctors semigroups text time time-locale-compat transformers
-         uuid void
+         profunctors scientific semigroups text time time-locale-compat
+         transformers uuid void
        ];
        testHaskellDepends = [
          aeson base containers contravariant dotenv hspec hspec-discover
@@ -156935,6 +157631,8 @@ self: {
        pname = "pandoc-pyplot";
        version = "1.0.2.0";
        sha256 = "0q6qj45g8d95z86lqkwpxw7c929x7q68611602mp2ip31dib11xc";
+       revision = "1";
+       editedCabalFile = "0zmvgzqhb4cggsr3m5xw1lhcns586jq5b0s9fhpwq1c3c6k5nq96";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -156985,8 +157683,8 @@ self: {
      }:
      mkDerivation {
        pname = "pandoc-types";
-       version = "1.17.5.2";
-       sha256 = "0hppl6drhl4xqav35jybji8g8cpy336mqkp0zb66kdsjya9inpqb";
+       version = "1.17.5.4";
+       sha256 = "09wk2zskr0r2llsyif3s0x7vix05l1ya7qacsmmkrlhba5naib1j";
        libraryHaskellDepends = [
          aeson base bytestring containers deepseq ghc-prim QuickCheck syb
          transformers
@@ -157000,30 +157698,6 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
-  "pandoc-types_1_17_5_3" = callPackage
-    ({ mkDerivation, aeson, base, bytestring, containers, criterion
-     , deepseq, ghc-prim, HUnit, QuickCheck, string-qq, syb
-     , test-framework, test-framework-hunit, test-framework-quickcheck2
-     , transformers
-     }:
-     mkDerivation {
-       pname = "pandoc-types";
-       version = "1.17.5.3";
-       sha256 = "1yrbad67jz8mgdyhl2hvah42g31iwnbvldp16jw87v96y0cbdl72";
-       libraryHaskellDepends = [
-         aeson base bytestring containers deepseq ghc-prim QuickCheck syb
-         transformers
-       ];
-       testHaskellDepends = [
-         aeson base bytestring containers HUnit QuickCheck string-qq syb
-         test-framework test-framework-hunit test-framework-quickcheck2
-       ];
-       benchmarkHaskellDepends = [ base criterion ];
-       description = "Types for representing a structured document";
-       license = stdenv.lib.licenses.bsd3;
-       hydraPlatforms = stdenv.lib.platforms.none;
-     }) {};
-
   "pandoc-unlit" = callPackage
     ({ mkDerivation, base, pandoc }:
      mkDerivation {
@@ -157683,8 +158357,8 @@ self: {
        pname = "parallel-io";
        version = "0.3.3";
        sha256 = "0i86x3bf8pjlg6mdg1zg5lcrjpg75pbqs2mrgrbp4z4bkcmw051s";
-       revision = "1";
-       editedCabalFile = "1vlb2x1ghih4l64031rmh7h643c3knh5r5mwilf7g8izb58ypvkm";
+       revision = "2";
+       editedCabalFile = "0mggzni708nzxlsjbibdzf03s3b5lnqj2zi1hnbh1rd4j4jr07ym";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -158672,8 +159346,8 @@ self: {
      }:
      mkDerivation {
        pname = "patat";
-       version = "0.8.0.0";
-       sha256 = "1xbddlc73b0sgd02vxkbhra04wz77q0dn1937k6aq5l1vx663i81";
+       version = "0.8.1.1";
+       sha256 = "19nnf08szakwivm7zqv85hr0vwpflpk455373a3hwhcjgkzdfy19";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
@@ -160195,6 +160869,25 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "persist" = callPackage
+    ({ mkDerivation, array, base, bytestring, containers, ghc-prim
+     , QuickCheck, test-framework, test-framework-quickcheck2, text
+     }:
+     mkDerivation {
+       pname = "persist";
+       version = "0.1";
+       sha256 = "0akiy8qrx71nj8l80hc7llxy7vnpcvjg01dhk499pl5mjaiqz2sq";
+       libraryHaskellDepends = [
+         array base bytestring containers ghc-prim text
+       ];
+       testHaskellDepends = [
+         base bytestring QuickCheck test-framework
+         test-framework-quickcheck2 text
+       ];
+       description = "Minimal serialization library with focus on performance";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "persist2er" = callPackage
     ({ mkDerivation, base, optparse-applicative, persistent, text }:
      mkDerivation {
@@ -162759,6 +163452,8 @@ self: {
        pname = "pipes-lzma";
        version = "0.1.1.2";
        sha256 = "0wx23wf1vr8d2nyapxgmpn1jk53hjbla1xss714vkmar7am37vrc";
+       revision = "1";
+       editedCabalFile = "13nyh3qqv3baifya0vwnnqh1yvr3k2yjrhjq7apigq0s584iyrka";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [ base bytestring lzma pipes ];
@@ -164607,6 +165302,18 @@ self: {
        license = "LGPL";
      }) {};
 
+  "polyparse_1_12_1" = callPackage
+    ({ mkDerivation, base, bytestring, text }:
+     mkDerivation {
+       pname = "polyparse";
+       version = "1.12.1";
+       sha256 = "19fs18g7fvfdkm9zy28cgighjcxfa6mcpqgyp6whmsjkb3h393fx";
+       libraryHaskellDepends = [ base bytestring text ];
+       description = "A variety of alternative parser combinator libraries";
+       license = "LGPL";
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "polyseq" = callPackage
     ({ mkDerivation, array, base, bytestring, cgi, containers
      , free-theorems, haskell-src, mtl, network, old-locale, old-time
@@ -166999,14 +167706,14 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
-  "pretty-show_1_8_2" = callPackage
+  "pretty-show_1_9_1" = callPackage
     ({ mkDerivation, array, base, filepath, ghc-prim, happy
      , haskell-lexer, pretty, text
      }:
      mkDerivation {
        pname = "pretty-show";
-       version = "1.8.2";
-       sha256 = "1fc431kr87hpk3rmdpbdiwsq0iyvh61hjwi4w0cp6zyasx8cg91a";
+       version = "1.9.1";
+       sha256 = "0b5diwdkfb2wi6q872fjjnrvysgww7c8nhq55bvccp50n9vs4jhz";
        isLibrary = true;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -171635,6 +172342,17 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "quickcheck-enum-instances" = callPackage
+    ({ mkDerivation, base, enum-types, QuickCheck }:
+     mkDerivation {
+       pname = "quickcheck-enum-instances";
+       version = "0.1.0.0";
+       sha256 = "117lpk15z288ad1bzakwf1z0jcdm7w5c0584lzwpgkmgqr3jgzdc";
+       libraryHaskellDepends = [ base enum-types QuickCheck ];
+       description = "arbitrary instances for small enum types";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "quickcheck-instances" = callPackage
     ({ mkDerivation, array, base, base-compat, bytestring
      , case-insensitive, containers, hashable, old-time, QuickCheck
@@ -178053,10 +178771,8 @@ self: {
      }:
      mkDerivation {
        pname = "resolv";
-       version = "0.1.1.1";
-       sha256 = "0wh7wj56l3f2bylz563g5g04a4nydj8acv60hpwa7k3mn792xca9";
-       revision = "3";
-       editedCabalFile = "0r1i7zrnynqxd3nzq4cz9648s3dmj29w63mcip57620d0fimyghm";
+       version = "0.1.1.2";
+       sha256 = "0wczdy3vmpfcfwjn1m95bygc5d83m97xxmavhdvy5ayn8c402fp4";
        libraryHaskellDepends = [
          base base16-bytestring binary bytestring containers
        ];
@@ -178064,7 +178780,7 @@ self: {
          base bytestring directory filepath tasty tasty-hunit
        ];
        description = "Domain Name Service (DNS) lookup via the libresolv standard library routines";
-       license = stdenv.lib.licenses.gpl3;
+       license = stdenv.lib.licenses.gpl2;
      }) {};
 
   "resolve" = callPackage
@@ -180306,6 +181022,23 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "rounded" = callPackage
+    ({ mkDerivation, base, ghc-prim, gmp, hgmp, long-double, mpfr
+     , reflection, singletons
+     }:
+     mkDerivation {
+       pname = "rounded";
+       version = "0.1";
+       sha256 = "02xlc369yi8wvf41z4d3291i63rcryl0yjp0k5lkn3c2f0k5w244";
+       libraryHaskellDepends = [
+         base ghc-prim hgmp long-double reflection singletons
+       ];
+       librarySystemDepends = [ gmp mpfr ];
+       testHaskellDepends = [ base long-double ];
+       description = "Correctly-rounded arbitrary-precision floating-point arithmetic";
+       license = "LGPL";
+     }) {inherit (pkgs) gmp; inherit (pkgs) mpfr;};
+
   "rounding" = callPackage
     ({ mkDerivation, array, base, numeric-extras }:
      mkDerivation {
@@ -182111,6 +182844,24 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "sandi_0_4_3" = callPackage
+    ({ mkDerivation, base, bytestring, conduit, criterion, exceptions
+     , tasty, tasty-hunit, tasty-quickcheck, tasty-th
+     }:
+     mkDerivation {
+       pname = "sandi";
+       version = "0.4.3";
+       sha256 = "0ji1zn9nkh8rdm0m9zpxdnz5zw0q0qypzyp2k9fn6j9v08r17p3n";
+       libraryHaskellDepends = [ base bytestring conduit exceptions ];
+       testHaskellDepends = [
+         base bytestring tasty tasty-hunit tasty-quickcheck tasty-th
+       ];
+       benchmarkHaskellDepends = [ base bytestring criterion ];
+       description = "Data encoding library";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "sandlib" = callPackage
     ({ mkDerivation, base }:
      mkDerivation {
@@ -183387,6 +184138,18 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "scotty-path-normalizer" = callPackage
+    ({ mkDerivation, base, bytestring, doctest, scotty, text, wai }:
+     mkDerivation {
+       pname = "scotty-path-normalizer";
+       version = "0.1.0.0";
+       sha256 = "1hv95q3ikf25d9kxzr48fxb2x1331c24n3q5nb47qa7866gy2f4q";
+       libraryHaskellDepends = [ base bytestring scotty text wai ];
+       testHaskellDepends = [ base doctest ];
+       description = "Redirect to a normalized path";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
   "scotty-resource" = callPackage
     ({ mkDerivation, base, containers, http-types, scotty, text
      , transformers, wai
@@ -184200,8 +184963,8 @@ self: {
      }:
      mkDerivation {
        pname = "secp256k1-haskell";
-       version = "0.1.3";
-       sha256 = "0wdxz8vmk5yfhjrwpynk1zpmvgl1rnwz7zvkx7g7pxxvz3z8rpbz";
+       version = "0.1.4";
+       sha256 = "1vfbn0fvrbk4hmfhsm8gj3yxyijzfdqlywwir64zrafla4yry73l";
        libraryHaskellDepends = [
          base base16-bytestring bytestring cereal entropy hashable
          QuickCheck string-conversions
@@ -185072,8 +185835,8 @@ self: {
     ({ mkDerivation, base, mtl, transformers }:
      mkDerivation {
        pname = "seqid";
-       version = "0.5.3";
-       sha256 = "1wc7a66k42njc0zv0cp4ycfv7jbcqyf77j9m6fikhdppbvn3cbn4";
+       version = "0.6.0";
+       sha256 = "1zm1zmzp3i60wb17ghr4rp5ljlhvsblll69x2ibjk7kh5icvwfqc";
        libraryHaskellDepends = [ base mtl transformers ];
        description = "Sequence ID production and consumption";
        license = stdenv.lib.licenses.bsd3;
@@ -185095,8 +185858,8 @@ self: {
     ({ mkDerivation, base, io-streams, seqid }:
      mkDerivation {
        pname = "seqid-streams";
-       version = "0.6.3";
-       sha256 = "1wmi4iqh6q45cm1s9ml2yi5b34m8cj7y5a0aicjfsc8nyy0pq48r";
+       version = "0.7.0";
+       sha256 = "0z80cclvzkr6dg81n96dpan9a7285rlq9nmchiy4raxsjw4cza58";
        libraryHaskellDepends = [ base io-streams seqid ];
        description = "Sequence ID IO-Streams";
        license = stdenv.lib.licenses.bsd3;
@@ -185452,6 +186215,8 @@ self: {
        pname = "servant-JuicyPixels";
        version = "0.3.0.4";
        sha256 = "10crrcrxap7751wifbc28kr1kv0rjvrx3wlnkajgv3xpr05g00kv";
+       revision = "1";
+       editedCabalFile = "185ym0ac6gx7f98pd92ykc1ib305lswzjzvykly4ij9vk85jn0ax";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -185921,8 +186686,8 @@ self: {
        pname = "servant-client";
        version = "0.14";
        sha256 = "0jr2057y7vp6d2jcnisawkajinnqm68h024crh929r9fdka0p1n6";
-       revision = "2";
-       editedCabalFile = "087ja0xbwm1yg38i5pc26fxsjx4pfdcgqmw0h1lvf0z1alz8rq05";
+       revision = "3";
+       editedCabalFile = "1rjjqxyyf51bjq8li8yilng5pjd9a5n3d8zniqmfw3hys6dz8n8g";
        libraryHaskellDepends = [
          base base-compat bytestring containers exceptions http-client
          http-media http-types monad-control mtl semigroupoids
@@ -185951,8 +186716,8 @@ self: {
        pname = "servant-client-core";
        version = "0.14.1";
        sha256 = "0qfpakwl6yj6l2br9wa9zs0v7nzmj4bngspw6p536swx39npnkn2";
-       revision = "1";
-       editedCabalFile = "04xr6zpslw7pyzxp22qd8k2w9azc3pds5gplnwni12waqahf410i";
+       revision = "2";
+       editedCabalFile = "02pvrccfwvvy53gma56jcqnbia3pm1pncyghdkjp519bwff9iwvb";
        libraryHaskellDepends = [
          base base-compat base64-bytestring bytestring containers exceptions
          free generics-sop http-api-data http-media http-types network-uri
@@ -186356,8 +187121,8 @@ self: {
      }:
      mkDerivation {
        pname = "servant-http2-client";
-       version = "0.1.0.1";
-       sha256 = "0jlbczbgbkjx4hai24csnd07r074s36g5hbpizhdxiqr3dcjk8pw";
+       version = "0.1.0.2";
+       sha256 = "0rjzc1dyj0njmh590ays5ma6243240qakrjgzi9qinvkgb7lzad2";
        libraryHaskellDepends = [
          base binary bytestring case-insensitive containers exceptions
          http-media http-types http2 http2-client mtl servant-client-core
@@ -186441,8 +187206,8 @@ self: {
      }:
      mkDerivation {
        pname = "servant-kotlin";
-       version = "0.1.1.2";
-       sha256 = "1ad1n1yp6b125fa5gjjnbksnjqf714jf9d8cvxrvpwkl9lxn9ppb";
+       version = "0.1.1.3";
+       sha256 = "07adjx1smqg5x87dklgknlmkavns2axmhqw97fk0jnp99rb1rpb2";
        libraryHaskellDepends = [
          base containers directory formatting lens servant servant-foreign
          text time wl-pprint-text
@@ -186784,10 +187549,8 @@ self: {
      }:
      mkDerivation {
        pname = "servant-quickcheck";
-       version = "0.0.7.2";
-       sha256 = "0zsf68c44yijmgkcd2qmcwz9p0kiix6dzhk3g4ifz60s6kv3jfbh";
-       revision = "1";
-       editedCabalFile = "1slgq8q0hmh904ssn5sfmi6mbpd3vkqvc59m3g9kfgzf5j70py2h";
+       version = "0.0.7.3";
+       sha256 = "0d904xfw5q7qcwkp5n7v18drc1idssvfwic2ksfmqlxisnxmyp5r";
        libraryHaskellDepends = [
          aeson base base-compat-batteries bytestring case-insensitive clock
          data-default-class hspec http-client http-media http-types mtl
@@ -187498,7 +188261,7 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
-  "serverless-haskell_0_7_5" = callPackage
+  "serverless-haskell_0_8_1" = callPackage
     ({ mkDerivation, aeson, aeson-casing, aeson-extra, amazonka-core
      , amazonka-kinesis, amazonka-s3, base, bytestring, case-insensitive
      , hspec, hspec-discover, http-types, iproute, lens, raw-strings-qq
@@ -187506,8 +188269,8 @@ self: {
      }:
      mkDerivation {
        pname = "serverless-haskell";
-       version = "0.7.5";
-       sha256 = "13l5day4dlwyykwx17v2znyh0ck1paaxjzzawnjklcjzk1rzj0i3";
+       version = "0.8.1";
+       sha256 = "1s5i2l57s0crpk3lysdw0v7kvfx567bhl0v5i18mdsa331bifcpd";
        libraryHaskellDepends = [
          aeson aeson-casing aeson-extra amazonka-core amazonka-kinesis
          amazonka-s3 base bytestring case-insensitive http-types iproute
@@ -188435,10 +189198,8 @@ self: {
      }:
      mkDerivation {
        pname = "shake-ats";
-       version = "1.10.0.1";
-       sha256 = "1p95r4ksfrb4hs9v75iq9iz565qz43k3cw63sz32nphqn204dbxz";
-       revision = "1";
-       editedCabalFile = "0x23r58i4yhf9rcaxfdy09nr93cpkr0cmxrwcn11hgcr1nkzaa0d";
+       version = "1.10.1.0";
+       sha256 = "1b5mbb3azjn2wwagciayd5lyb6jd2siwn1l9ispnqrkrh1bqgzb5";
        libraryHaskellDepends = [
          base binary dependency directory hs2ats language-ats microlens
          shake shake-c shake-cabal shake-ext text
@@ -189055,8 +189816,8 @@ self: {
     ({ mkDerivation, base, containers, text, unix }:
      mkDerivation {
        pname = "shell-monad";
-       version = "0.6.5";
-       sha256 = "0vg2g65km3i963scyj7fn17g562wg0mh88syxqrf7favnljid1bk";
+       version = "0.6.6";
+       sha256 = "1z3anvjcix25i2zzwnln2hnpzacwiss95xhyc0mclc33v0j5k038";
        libraryHaskellDepends = [ base containers text unix ];
        description = "shell monad";
        license = stdenv.lib.licenses.bsd3;
@@ -189928,6 +190689,22 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "simple-affine-space" = callPackage
+    ({ mkDerivation, base, deepseq, directory, filepath, hlint, process
+     , regex-posix
+     }:
+     mkDerivation {
+       pname = "simple-affine-space";
+       version = "0.1";
+       sha256 = "02cy4vnl3fy18dsfxazh60bqgk5c1gw2x460x6i1fb5qysw7q8nh";
+       libraryHaskellDepends = [ base deepseq ];
+       testHaskellDepends = [
+         base directory filepath hlint process regex-posix
+       ];
+       description = "A simple library for affine and vector spaces";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "simple-atom" = callPackage
     ({ mkDerivation, base, containers, deepseq }:
      mkDerivation {
@@ -189987,6 +190764,18 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "simple-cmd_0_1_2" = callPackage
+    ({ mkDerivation, base, directory, filepath, process }:
+     mkDerivation {
+       pname = "simple-cmd";
+       version = "0.1.2";
+       sha256 = "10jdyl1ghzczxw5bi8s1694fla42s1aknmj5grxndidwzf95b8g6";
+       libraryHaskellDepends = [ base directory filepath process ];
+       description = "Simple String-based process commands";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "simple-conduit" = callPackage
     ({ mkDerivation, base, bifunctors, bytestring, CC-delcont
      , chunked-data, conduit, conduit-combinators, conduit-extra
@@ -190467,8 +191256,8 @@ self: {
     ({ mkDerivation, base, process }:
      mkDerivation {
        pname = "simple-smt";
-       version = "0.9.1";
-       sha256 = "13dg61jdgby49lpdb53anrg39wn8dwgvg6jpn8vh0y8rf2zilq9b";
+       version = "0.9.3";
+       sha256 = "17v8zpiiha8kyb4xbrqdnfibf1dwzf9lbhxj9kffvl948ygxdp8x";
        libraryHaskellDepends = [ base process ];
        description = "A simple way to interact with an SMT solver process";
        license = stdenv.lib.licenses.bsd3;
@@ -190623,6 +191412,24 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "simple-vec3_0_4_0_9" = callPackage
+    ({ mkDerivation, base, criterion, doctest, doctest-driver-gen
+     , QuickCheck, tasty, tasty-quickcheck, vector
+     }:
+     mkDerivation {
+       pname = "simple-vec3";
+       version = "0.4.0.9";
+       sha256 = "1rx4nifv75lpxrdgq6x3a61d56qp0ln9rhf2d10l2ds049dlq0pz";
+       libraryHaskellDepends = [ base QuickCheck vector ];
+       testHaskellDepends = [
+         base doctest doctest-driver-gen tasty tasty-quickcheck
+       ];
+       benchmarkHaskellDepends = [ base criterion vector ];
+       description = "Three-dimensional vectors of doubles with basic operations";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "simple-zipper" = callPackage
     ({ mkDerivation, base, hspec, lens }:
      mkDerivation {
@@ -190840,10 +191647,10 @@ self: {
     ({ mkDerivation, base, containers }:
      mkDerivation {
        pname = "simtreelo";
-       version = "0.1.1.3";
-       sha256 = "148j6z8rxqaiwfjgxz780fy8w8xv8a8gwida61lfir677jlkwgh9";
+       version = "0.1.1.4";
+       sha256 = "0a8414006gdya8b4dw38251kim3x2i5g7m03ga479ialghralrc8";
        libraryHaskellDepends = [ base containers ];
-       description = "Loader for data organized in a tree";
+       description = "Load data organized in a tree";
        license = stdenv.lib.licenses.gpl3;
      }) {};
 
@@ -191104,8 +191911,8 @@ self: {
      }:
      mkDerivation {
        pname = "sitepipe";
-       version = "0.3.0.1";
-       sha256 = "1iv0ndllixwn9vj7gqavv1ymfxfxqm4xqqzxqf1y8qiq240b3j6l";
+       version = "0.3.0.2";
+       sha256 = "0f26sqpf8rjrbpk6q9hp0q705hhmhyp71jyj5w9jgq6mnj34rxy8";
        libraryHaskellDepends = [
          aeson base bytestring containers directory exceptions filepath Glob
          lens lens-aeson megaparsec MissingH mtl mustache
@@ -191644,8 +192451,8 @@ self: {
      }:
      mkDerivation {
        pname = "slate";
-       version = "0.11.0.0";
-       sha256 = "0y6l3cjlh0hkc3nch7fwvxpv2i5r9qv6r1kdi3savi0vp0dvgdy8";
+       version = "0.12.0.0";
+       sha256 = "01qi6k9gcz6y8x8hlvsmm2irfvcsbdqqvzg5kgf2x02idmh9zy1a";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -192550,8 +193357,8 @@ self: {
        pname = "snap-core";
        version = "1.0.3.2";
        sha256 = "136q7l4hd5yn5hb507q1ziqx124ma1lkzh5dx0n150p8dx3rhhsc";
-       revision = "2";
-       editedCabalFile = "0m0rjsgv0lkd0y9ragn478ibw98c9iys4mrj26x8ihasdnzgkqxq";
+       revision = "3";
+       editedCabalFile = "0wlhn33r7c9g7j23y006ddq9d87lkmianvvfrbl8jd8mvjvj2gfa";
        libraryHaskellDepends = [
          attoparsec base bytestring bytestring-builder case-insensitive
          containers directory filepath hashable HUnit io-streams lifted-base
@@ -192628,8 +193435,8 @@ self: {
      }:
      mkDerivation {
        pname = "snap-extras";
-       version = "0.12.2.0";
-       sha256 = "18d1gfpk2gzvaidb6l13y64540hfyqk5hw6gpx7z495ay1dafdzr";
+       version = "0.12.2.1";
+       sha256 = "0mzvw49v6i77ysdlxfrdva5kn0vj9p5h2br6qlwvhdwqq8269gqp";
        isLibrary = true;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -192754,8 +193561,8 @@ self: {
        pname = "snap-server";
        version = "1.1.0.0";
        sha256 = "0vvw9n8xs272qdlrf3dxhnva41zh3awi7pf022rrjj75lj8a77i4";
-       revision = "2";
-       editedCabalFile = "03jmxbz9bf0yr3vzf3xa7ajbz3q9i6cn7bzqan4vy5f26c0n6xld";
+       revision = "3";
+       editedCabalFile = "0a9d3nqb5rvgm25nak68lp6yj9m6cwhbgdbg5l7ib5i2czcg7yjh";
        configureFlags = [ "-fopenssl" ];
        isLibrary = true;
        isExecutable = true;
@@ -195011,14 +195818,21 @@ self: {
      }) {};
 
   "spdx" = callPackage
-    ({ mkDerivation, base, tasty, tasty-quickcheck, transformers }:
+    ({ mkDerivation, base, base-compat, Cabal, containers, QuickCheck
+     , tasty, tasty-quickcheck, transformers
+     }:
      mkDerivation {
        pname = "spdx";
-       version = "0.2.2.0";
-       sha256 = "1jxxivxlhzjx4idy69qhqqv37sspqhk3f3i93mydzn8cyhn87aqp";
-       libraryHaskellDepends = [ base transformers ];
-       testHaskellDepends = [ base tasty tasty-quickcheck ];
-       description = "SPDX license expression language";
+       version = "1";
+       sha256 = "1vw6pqj86slgzgbrd6kmsn5xlbxln0cys9qxxa47ypfy4spxmfkd";
+       libraryHaskellDepends = [ base Cabal containers transformers ];
+       testHaskellDepends = [
+         base base-compat Cabal tasty tasty-quickcheck
+       ];
+       benchmarkHaskellDepends = [
+         base base-compat Cabal QuickCheck tasty-quickcheck
+       ];
+       description = "SPDX license expression language, Extras";
        license = stdenv.lib.licenses.bsd3;
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
@@ -197916,6 +198730,29 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "statsdi" = callPackage
+    ({ mkDerivation, base, bytestring, dequeue, ether, hashable, hspec
+     , network, random, stm, tasty, tasty-hspec, template-haskell, time
+     , transformers, transformers-lift, unordered-containers
+     }:
+     mkDerivation {
+       pname = "statsdi";
+       version = "0.2.0.0";
+       sha256 = "1gbaxrvn8ilrj808hplqlibawy9kdmfb5pc2yzzdghmcsjys24g1";
+       revision = "1";
+       editedCabalFile = "02kf7pigkvqsm720l8rn6m3gdjqrdhli5yijsjf8n11mj6k8xrk0";
+       libraryHaskellDepends = [
+         base bytestring dequeue ether hashable network random stm
+         template-haskell time transformers transformers-lift
+         unordered-containers
+       ];
+       testHaskellDepends = [
+         base bytestring hspec network stm tasty tasty-hspec time
+       ];
+       description = "A lovely [Dog]StatsD implementation";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
   "status-notifier-item" = callPackage
     ({ mkDerivation, base, bytestring, containers, dbus, dbus-hslogger
      , filepath, hslogger, lens, network, optparse-applicative, spool
@@ -198790,57 +199627,6 @@ self: {
      }) {};
 
   "store" = callPackage
-    ({ mkDerivation, array, async, base, base-orphans
-     , base64-bytestring, bifunctors, bytestring, cereal, cereal-vector
-     , containers, contravariant, criterion, cryptohash, deepseq
-     , directory, filepath, free, ghc-prim, hashable, hspec
-     , hspec-smallcheck, integer-gmp, lifted-base, monad-control
-     , mono-traversable, network, primitive, resourcet, safe, semigroups
-     , smallcheck, store-core, syb, template-haskell, text, th-lift
-     , th-lift-instances, th-orphans, th-reify-many, th-utilities, time
-     , transformers, unordered-containers, vector
-     , vector-binary-instances, void, weigh
-     }:
-     mkDerivation {
-       pname = "store";
-       version = "0.5.0";
-       sha256 = "1ivr2pvfja2plhp625wjv9lbd47vmydp33f31ljwdyzqik2j7vij";
-       libraryHaskellDepends = [
-         array async base base-orphans base64-bytestring bifunctors
-         bytestring containers contravariant cryptohash deepseq directory
-         filepath free ghc-prim hashable hspec hspec-smallcheck integer-gmp
-         lifted-base monad-control mono-traversable network primitive
-         resourcet safe semigroups smallcheck store-core syb
-         template-haskell text th-lift th-lift-instances th-orphans
-         th-reify-many th-utilities time transformers unordered-containers
-         vector void
-       ];
-       testHaskellDepends = [
-         array async base base-orphans base64-bytestring bifunctors
-         bytestring cereal cereal-vector containers contravariant criterion
-         cryptohash deepseq directory filepath free ghc-prim hashable hspec
-         hspec-smallcheck integer-gmp lifted-base monad-control
-         mono-traversable network primitive resourcet safe semigroups
-         smallcheck store-core syb template-haskell text th-lift
-         th-lift-instances th-orphans th-reify-many th-utilities time
-         transformers unordered-containers vector vector-binary-instances
-         void weigh
-       ];
-       benchmarkHaskellDepends = [
-         array async base base-orphans base64-bytestring bifunctors
-         bytestring containers contravariant criterion cryptohash deepseq
-         directory filepath free ghc-prim hashable hspec hspec-smallcheck
-         integer-gmp lifted-base monad-control mono-traversable network
-         primitive resourcet safe semigroups smallcheck store-core syb
-         template-haskell text th-lift th-lift-instances th-orphans
-         th-reify-many th-utilities time transformers unordered-containers
-         vector void
-       ];
-       description = "Fast binary serialization";
-       license = stdenv.lib.licenses.mit;
-     }) {};
-
-  "store_0_5_0_1" = callPackage
     ({ mkDerivation, array, async, base, base-orphans
      , base64-bytestring, bifunctors, bytestring, cereal, cereal-vector
      , clock, containers, contravariant, criterion, cryptohash, deepseq
@@ -198889,7 +199675,6 @@ self: {
        ];
        description = "Fast binary serialization";
        license = stdenv.lib.licenses.mit;
-       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "store-core" = callPackage
@@ -198970,15 +199755,15 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
-  "stratosphere_0_26_1" = callPackage
+  "stratosphere_0_26_2" = callPackage
     ({ mkDerivation, aeson, aeson-pretty, base, bytestring, containers
      , hashable, hspec, hspec-discover, lens, template-haskell, text
      , unordered-containers
      }:
      mkDerivation {
        pname = "stratosphere";
-       version = "0.26.1";
-       sha256 = "0npmnj71gaf61gcxi772h4sgsz68j5jk7v5z3bjc120z7vc1a22v";
+       version = "0.26.2";
+       sha256 = "0f4vqll4bfwrf6hysdnh1gkjl79qcs1pwn3p6224xlqzmajb9hc5";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -199429,8 +200214,8 @@ self: {
      }:
      mkDerivation {
        pname = "streaming-fft";
-       version = "0.1.0.0";
-       sha256 = "1qphhbap1va897ghcr8v4d3nnpcb4w0b422d24isz8rg138m99wi";
+       version = "0.1.0.1";
+       sha256 = "1bs0wqcns0nn62rw04a1574qakqhflxhsybchf9pzig0gyrj4538";
        libraryHaskellDepends = [
          base contiguous-fft ghc-prim prim-instances primitive streaming
        ];
@@ -199666,7 +200451,7 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
-  "streamly_0_5_1" = callPackage
+  "streamly_0_5_2" = callPackage
     ({ mkDerivation, atomic-primops, base, clock, containers, deepseq
      , exceptions, gauge, ghc-prim, heaps, hspec, lockfree-queue
      , monad-control, mtl, QuickCheck, random, transformers
@@ -199674,8 +200459,8 @@ self: {
      }:
      mkDerivation {
        pname = "streamly";
-       version = "0.5.1";
-       sha256 = "04hc87jwcfpbwydm75ic3rz87m76s39aysi14m514nib87xprbji";
+       version = "0.5.2";
+       sha256 = "1pla9356yhf6zv2yz4mh8g1dslzdkkych4jrjyi4rw66frvw0jg6";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -200458,8 +201243,8 @@ self: {
      }:
      mkDerivation {
        pname = "structured-cli";
-       version = "2.0.0.1";
-       sha256 = "1xgf49pd1dm80qp1h14f2nyqv71axrijrd8k66jmmqkczf24jah2";
+       version = "2.2.0.0";
+       sha256 = "1ia9xbbshzx0p69i8gq3y88qbg60cks52kb6hxm2ylkm7jnzgxzj";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -201152,28 +201937,27 @@ self: {
   "super-user-spark" = callPackage
     ({ mkDerivation, aeson, aeson-pretty, base, bytestring, directory
      , filepath, genvalidity, genvalidity-hspec, genvalidity-hspec-aeson
-     , genvalidity-path, hashable, hspec, hspec-core, HUnit, iostring
-     , mtl, optparse-applicative, parsec, path, path-io, process
-     , QuickCheck, text, transformers, unix, validity, validity-path
+     , genvalidity-path, hashable, hspec, hspec-core, mtl
+     , optparse-applicative, parsec, path, path-io, process, QuickCheck
+     , text, transformers, unix, validity, validity-path
      }:
      mkDerivation {
        pname = "super-user-spark";
-       version = "0.4.0.0";
-       sha256 = "1yk0kkp9rj63m7vqvki7zs3l8r5da8as7hpw1l6qk2gf74lpkfdy";
+       version = "0.4.0.1";
+       sha256 = "0pxkvc1vjarh4p5rqnai6nlsqxv9as8jvqs2vpywl1525nsfyvy5";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
-         aeson aeson-pretty base bytestring directory filepath hashable
-         iostring mtl optparse-applicative parsec path path-io process text
-         unix validity validity-path
+         aeson aeson-pretty base bytestring directory filepath hashable mtl
+         optparse-applicative parsec path path-io process text unix validity
+         validity-path
        ];
        executableHaskellDepends = [ base ];
        testHaskellDepends = [
          aeson aeson-pretty base bytestring directory filepath genvalidity
          genvalidity-hspec genvalidity-hspec-aeson genvalidity-path hashable
-         hspec hspec-core HUnit iostring mtl optparse-applicative parsec
-         path path-io process QuickCheck text transformers unix validity
-         validity-path
+         hspec hspec-core mtl optparse-applicative parsec path path-io
+         process QuickCheck text transformers unix validity validity-path
        ];
        description = "Configure your dotfile deployment with a DSL";
        license = stdenv.lib.licenses.mit;
@@ -201825,8 +202609,8 @@ self: {
        pname = "swagger2";
        version = "2.3.0.1";
        sha256 = "1l8piv2phl8kq3rgna8wld80b569vazqk2ll1rgs5iakm42lxr1f";
-       revision = "1";
-       editedCabalFile = "12w7bsld9wp2nm61vwdwb6ndjd3g99i0g4hjr32mrycmf41yvs1a";
+       revision = "2";
+       editedCabalFile = "0dfxf47mzzb5rmln2smsk0qx53kj1lc3a087r52g2rzz6971zivb";
        setupHaskellDepends = [ base Cabal cabal-doctest ];
        libraryHaskellDepends = [
          aeson base base-compat-batteries bytestring containers generics-sop
@@ -201970,8 +202754,8 @@ self: {
      }:
      mkDerivation {
        pname = "sws";
-       version = "0.4.2.0";
-       sha256 = "0bwfpw348g167a195f8g4cp3h553hkanm6s67bairhn8qprh8az4";
+       version = "0.4.3.0";
+       sha256 = "0zwh7az9pgsgvx9wbjnz8lzy2v8lrkkwv3h72jfy5sj50xylrzbr";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
@@ -202214,8 +202998,8 @@ self: {
        pname = "symbol";
        version = "0.2.4";
        sha256 = "0cc8kdm68pirb0s7n46v0yvw5b718qf7qip40jkg5q3c3xsafx6h";
-       revision = "1";
-       editedCabalFile = "01ab7600ja88wfvg9x8zmxksw44j9klmm71y9zmig7qxs1qslb25";
+       revision = "2";
+       editedCabalFile = "0jdbaap11pkgb6m98v57k7qnx62pqxy7pa2i7293ywa4q305qgm1";
        libraryHaskellDepends = [ base containers deepseq ];
        description = "A 'Symbol' type for fast symbol comparison";
        license = stdenv.lib.licenses.bsd3;
@@ -204578,6 +205362,8 @@ self: {
        pname = "tasty-hedgehog-coverage";
        version = "0.1.0.0";
        sha256 = "1d2hnhkpk71k0xjw63jsn6fa4ih01xqn4dgdbflp6yrs0zw6p95c";
+       revision = "1";
+       editedCabalFile = "1p3d9w24q39fnljv9m5a8anpv3j3cvazbca4d3hqrjx5w06ik42f";
        libraryHaskellDepends = [
          base containers hedgehog mtl tagged tasty tasty-hedgehog text
          transformers wl-pprint-annotated
@@ -206011,8 +206797,8 @@ self: {
      }:
      mkDerivation {
        pname = "term-rewriting";
-       version = "0.3";
-       sha256 = "03y5s9c9n1mnij3yh5z4c69isg5cbpwczj5sjjvajqaaqf6xy5f3";
+       version = "0.3.0.1";
+       sha256 = "0fa2yqdhw93r7byx47z050sq2yc0arfsvwnzl4jp1vyhdzarfwqd";
        libraryHaskellDepends = [
          ansi-wl-pprint array base containers mtl multiset parsec
          union-find-array
@@ -206889,10 +207675,8 @@ self: {
      }:
      mkDerivation {
        pname = "texmath";
-       version = "0.11.1.1";
-       sha256 = "1syvyiw84as79c76mssw1p4d3lrnghnwdyy4ip1w48qd07fadxf6";
-       revision = "1";
-       editedCabalFile = "0740lpg42r0wdj9hm9gvnzrjka9mqpkzazx2s3qnliiigy39zk96";
+       version = "0.11.1.2";
+       sha256 = "1wac48qlcwrfm5j1yng27929iqnj2x0zkj7ffrwkj3rchf0i4grp";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -211193,24 +211977,21 @@ self: {
      }) {};
 
   "toodles" = callPackage
-    ({ mkDerivation, aeson, base, blaze-html, bytestring, cmdargs
-     , directory, filepath, http-types, megaparsec, MissingH
-     , regex-posix, servant, servant-blaze, servant-server, strict, text
-     , transformers, wai, warp, yaml
+    ({ mkDerivation, aeson, base, blaze-html, cmdargs, directory
+     , megaparsec, MissingH, regex-posix, servant, servant-blaze
+     , servant-server, strict, text, wai, warp, yaml
      }:
      mkDerivation {
        pname = "toodles";
-       version = "0.1.0.9";
-       sha256 = "01gjxd4pclilm19iw7nkr23pmyavd7d9k0wa1c63hwhdzm1591f7";
-       revision = "3";
-       editedCabalFile = "08zadf5r79dpw9g0hg6lsnyvcnpprzb9d0lfs67kpyigm5ih9w8w";
+       version = "0.1.0.16";
+       sha256 = "1xr9cl69v5m08d44xgprlpk9j5j2lby84lzcp3fjzlvfdnnx0q72";
        isLibrary = false;
        isExecutable = true;
        enableSeparateDataOutput = true;
        executableHaskellDepends = [
-         aeson base blaze-html bytestring cmdargs directory filepath
-         http-types megaparsec MissingH regex-posix servant servant-blaze
-         servant-server strict text transformers wai warp yaml
+         aeson base blaze-html cmdargs directory megaparsec MissingH
+         regex-posix servant servant-blaze servant-server strict text wai
+         warp yaml
        ];
        description = "Manage the TODO entries in your code";
        license = stdenv.lib.licenses.mit;
@@ -211743,8 +212524,10 @@ self: {
      }:
      mkDerivation {
        pname = "traildb";
-       version = "0.1.4.0";
-       sha256 = "1qp3m8vfjy9kim9jikhxplyp6c21scj18n9qnb0pfd0hpjyigd9b";
+       version = "0.1.4.1";
+       sha256 = "1h3pscbxjl3cpcxbch4ydiv6y5j54k99v8kq61jv01gv1vjisd2r";
+       isLibrary = true;
+       isExecutable = true;
        libraryHaskellDepends = [
          base bytestring containers directory exceptions primitive
          profunctors text time transformers unix vector
@@ -212413,8 +213196,8 @@ self: {
        pname = "tree-diff";
        version = "0.0.1";
        sha256 = "049v44c520jy3icxlnrvbdblh3mjmvd7m6qmkzxbzkf02x63xqmz";
-       revision = "5";
-       editedCabalFile = "1rj2n9d6mmk6zijnlc0q72s2qs8hhwhf25gpqqswaiqhbbh7gxi2";
+       revision = "6";
+       editedCabalFile = "1wyhygrpqphxzzwlrk6nl4h5xbyx6zi0y34i1nxvsy726fl5idai";
        libraryHaskellDepends = [
          aeson ansi-terminal ansi-wl-pprint base base-compat bytestring
          containers generics-sop hashable MemoTrie parsec parsers pretty
@@ -215024,8 +215807,8 @@ self: {
     ({ mkDerivation, base, hspec, QuickCheck }:
      mkDerivation {
        pname = "typenums";
-       version = "0.1.2";
-       sha256 = "1729iws0m6xr8y5aqcrxv4br1ihvly6fagkkgfp9kj71a5jzaw7l";
+       version = "0.1.2.1";
+       sha256 = "06wrsvbddv2ga7k39954697jnclb5r6g4m95pr0fmv34ws1y1d66";
        libraryHaskellDepends = [ base ];
        testHaskellDepends = [ base hspec QuickCheck ];
        description = "Type level numbers using existing Nat functionality";
@@ -223807,6 +224590,40 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "web3_0_8_1_0" = callPackage
+    ({ mkDerivation, aeson, async, base, basement, bytestring, cereal
+     , cryptonite, data-default, exceptions, generics-sop, hspec
+     , hspec-contrib, hspec-discover, hspec-expectations, http-client
+     , http-client-tls, machines, memory, microlens, microlens-aeson
+     , microlens-mtl, microlens-th, mtl, OneTuple, parsec, random
+     , relapse, secp256k1-haskell, split, stm, tagged, template-haskell
+     , text, time, transformers, vinyl
+     }:
+     mkDerivation {
+       pname = "web3";
+       version = "0.8.1.0";
+       sha256 = "0aliq3iblnlz7waswzprb8z28v82sjq8qpc2bbcyknmpp52p2r26";
+       libraryHaskellDepends = [
+         aeson async base basement bytestring cereal cryptonite data-default
+         exceptions generics-sop http-client http-client-tls machines memory
+         microlens microlens-aeson microlens-mtl microlens-th mtl OneTuple
+         parsec relapse secp256k1-haskell tagged template-haskell text
+         transformers vinyl
+       ];
+       testHaskellDepends = [
+         aeson async base basement bytestring cereal cryptonite data-default
+         exceptions generics-sop hspec hspec-contrib hspec-discover
+         hspec-expectations http-client http-client-tls machines memory
+         microlens microlens-aeson microlens-mtl microlens-th mtl OneTuple
+         parsec random relapse secp256k1-haskell split stm tagged
+         template-haskell text time transformers vinyl
+       ];
+       testToolDepends = [ hspec-discover ];
+       description = "Ethereum API for Haskell";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "webapi" = callPackage
     ({ mkDerivation, aeson, base, binary, blaze-builder, bytestring
      , bytestring-lexing, bytestring-trie, case-insensitive, containers
@@ -224934,14 +225751,12 @@ self: {
     ({ mkDerivation, base, bytestring, deepseq, dnsapi }:
      mkDerivation {
        pname = "windns";
-       version = "0.1.0.0";
-       sha256 = "1hphwmwc1182p5aqjswcgqjbilm91rv5svjqhd93cqq599gg8q0c";
-       revision = "3";
-       editedCabalFile = "0j6gqyvhv7hxm5n249nrv0d9r41qb0yc4qdrzkjgs6lchndi6mrp";
+       version = "0.1.0.1";
+       sha256 = "016d1cf51jqvhbzlf5kbizv4l4dymradac1420rl47q2k5faczq8";
        libraryHaskellDepends = [ base bytestring deepseq ];
        librarySystemDepends = [ dnsapi ];
-       description = "Domain Name Service (DNS) lookup via the Windows dnsapi standard library";
-       license = stdenv.lib.licenses.gpl3;
+       description = "Domain Name Service (DNS) lookup via the <windns.h>/dnsapi.dll standard library";
+       license = stdenv.lib.licenses.gpl2;
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {dnsapi = null;};
 
@@ -226126,6 +226941,21 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "writer-cps-exceptions" = callPackage
+    ({ mkDerivation, base, exceptions, transformers
+     , writer-cps-transformers
+     }:
+     mkDerivation {
+       pname = "writer-cps-exceptions";
+       version = "0.1.0.0";
+       sha256 = "1s44h5d0f847w3j65frvjq2g6khz2ipsch109qnq5h2vcbgxid4v";
+       libraryHaskellDepends = [
+         base exceptions transformers writer-cps-transformers
+       ];
+       description = "Control.Monad.Catch instances for the stricter CPS WriterT and RWST";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "writer-cps-full" = callPackage
     ({ mkDerivation, base, writer-cps-lens, writer-cps-morph
      , writer-cps-mtl, writer-cps-transformers
@@ -228120,8 +228950,8 @@ self: {
        pname = "xmlhtml";
        version = "0.2.5.2";
        sha256 = "1p2v1cj9jjwbqyb0fyv2201zd7ljz5d46qg5kwy7rz2bchbqd0b4";
-       revision = "1";
-       editedCabalFile = "15lvbvdcagnqr62wfs3zz9xlcv553jr4ixbl50fsaxhkvlnymk45";
+       revision = "2";
+       editedCabalFile = "1d7q7acdv72zbbqq2n0swf3ia3lz1zplni6q5r97sp2w1a3xm6hf";
        libraryHaskellDepends = [
          base blaze-builder blaze-html blaze-markup bytestring
          bytestring-builder containers parsec text unordered-containers
@@ -229434,6 +230264,19 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "yampa-gloss" = callPackage
+    ({ mkDerivation, base, gloss, Yampa }:
+     mkDerivation {
+       pname = "yampa-gloss";
+       version = "0.1.0.0";
+       sha256 = "1h9x76swrq64add2v6935542gh5l5rpf5nqdy1nl2q78ksk6r04g";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [ base gloss Yampa ];
+       description = "A GLOSS backend for Yampa";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
   "yampa-glut" = callPackage
     ({ mkDerivation, base, GLUT, newtype, OpenGL, vector-space
      , Yampa-core
@@ -229477,8 +230320,8 @@ self: {
      }:
      mkDerivation {
        pname = "yampa-test";
-       version = "0.1.0.0";
-       sha256 = "1d69qa8dzwsj6pawlg88vwv1r2ig2vnx11zbaq0pbl5hczfnknpd";
+       version = "0.1.1";
+       sha256 = "1qc1aic4apml5akq056i5c460x12hf613r1zkisshjm0na4gx5mb";
        libraryHaskellDepends = [
          base normaldistribution QuickCheck Yampa
        ];
@@ -231450,6 +232293,23 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "yesod-recaptcha2_0_3_0" = callPackage
+    ({ mkDerivation, aeson, base, classy-prelude, http-conduit
+     , yesod-auth, yesod-core, yesod-form
+     }:
+     mkDerivation {
+       pname = "yesod-recaptcha2";
+       version = "0.3.0";
+       sha256 = "12bgj16vfmvk6ri55wmx444njhlmf11v4cins8c1a6isjk8alhhc";
+       libraryHaskellDepends = [
+         aeson base classy-prelude http-conduit yesod-auth yesod-core
+         yesod-form
+       ];
+       description = "yesod recaptcha2";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "yesod-routes" = callPackage
     ({ mkDerivation, base, bytestring, containers, hspec, HUnit
      , path-pieces, template-haskell, text, vector
@@ -232541,6 +233401,17 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "yoda" = callPackage
+    ({ mkDerivation, base }:
+     mkDerivation {
+       pname = "yoda";
+       version = "0.1.0.0";
+       sha256 = "1p8zvxf63fbj2dpp3pa9awq1jc0makyka42j1aqsljfp08nx4pzn";
+       libraryHaskellDepends = [ base ];
+       description = "Parser combinators for young padawans";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "yoga" = callPackage
     ({ mkDerivation, base, bindings-DSL, ieee754 }:
      mkDerivation {

From b376d55e5221f7cc96fec7706988a43f34321686 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Wed, 31 Oct 2018 12:00:45 +0100
Subject: [PATCH 0192/1129] haskell-easytest: drop obsolete override for
 ghc-8.6.x

---
 .../development/haskell-modules/configuration-ghc-8.6.x.nix | 6 ------
 1 file changed, 6 deletions(-)

diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
index 61f188aeddbc..15497cd692e0 100644
--- a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
+++ b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
@@ -111,12 +111,6 @@ self: super: {
   # https://github.com/jgm/skylighting/issues/55
   skylighting-core = dontCheck super.skylighting-core;
 
-  # https://github.com/joelburget/easytest/issues/12
-  easytest = appendPatch super.easytest (pkgs.fetchpatch {
-    url = https://github.com/joelburget/easytest/pull/13.patch;
-    sha256 = "0gnsgga8x2yxyg27pya6rhmxfsxf167vsi4xdj98fn8v0j7zz1v1";
-  });
-
   # https://github.com/jgm/pandoc/issues/4974
   pandoc = doJailbreak super.pandoc_2_3_1;
 

From 1bc42cb1935020a85845e59e38e3dd484991eaaf Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Wed, 31 Oct 2018 12:01:17 +0100
Subject: [PATCH 0193/1129] haskell-xmobar: drop obsolete override for
 ghc-8.6.x

---
 pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
index 15497cd692e0..37d11e08c985 100644
--- a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
+++ b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
@@ -117,7 +117,4 @@ self: super: {
   # Break out of "yaml >=0.10.4.0 && <0.11".
   stack = doJailbreak super.stack;
 
-  # https://github.com/vimus/libmpd-haskell/issues/109
-  xmobar = disableCabalFlag (super.xmobar.override { libmpd = null; }) "with_mpd";
-
 }

From cd68a8c7cc602e75a4abbadc94663347a73ae24e Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Wed, 31 Oct 2018 12:03:38 +0100
Subject: [PATCH 0194/1129] haskell-fltkhs-themes: disable Hydra build to avoid
 evaluation errors

---
 pkgs/development/haskell-modules/configuration-hackage2nix.yaml | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
index a2b86b220940..1b85a564e31b 100644
--- a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
+++ b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
@@ -2586,6 +2586,7 @@ dont-distribute-packages:
   fltkhs-demos:                                 [ i686-linux, x86_64-linux, x86_64-darwin ]
   fltkhs-fluid-demos:                           [ i686-linux, x86_64-linux, x86_64-darwin ]
   fltkhs-hello-world:                           [ i686-linux, x86_64-linux, x86_64-darwin ]
+  fltkhs-themes:                                [ i686-linux, x86_64-linux, x86_64-darwin ]
   ghcjs-dom-hello:                              [ i686-linux, x86_64-linux, x86_64-darwin ]
   ghcjs-dom-webkit:                             [ i686-linux, x86_64-linux, x86_64-darwin ]
   gi-javascriptcore:                            [ i686-linux, x86_64-linux, x86_64-darwin ]

From 3d5f7e368f31a201d0151b90e4508aa0f693110e Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Wed, 31 Oct 2018 12:05:11 +0100
Subject: [PATCH 0195/1129] haskell-polyparse: drop obsolete override for
 ghc-8.6.x

---
 .../development/haskell-modules/configuration-ghc-8.6.x.nix | 6 ------
 1 file changed, 6 deletions(-)

diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
index 37d11e08c985..b92777276504 100644
--- a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
+++ b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
@@ -99,12 +99,6 @@ self: super: {
   # https://github.com/bmillwood/haskell-src-meta/pull/80
   haskell-src-meta = doJailbreak super.haskell-src-meta;
 
-  # The official 1.12 release is broken and unmaintained.
-  polyparse = appendPatch (overrideCabal super.polyparse (drv: { editedCabalFile = null; })) (pkgs.fetchpatch {
-    url = https://github.com/bergmark/polyparse/commit/8a69ee7e57db798c106d8b56dce05b1dfc4fed37.patch;
-    sha256 = "11r73wx1w6bfrkrnk6r9k7rfzp6qrvkdikb2by37ld06c0w6nn57";
-  });
-
   # https://github.com/skogsbaer/HTF/issues/69
   HTF = markBrokenVersion "0.13.2.4" super.HTF;
 

From 8c717a5701c780cf7fb95a553fb5a7e81eccd080 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Wed, 31 Oct 2018 07:00:04 -0500
Subject: [PATCH 0196/1129] activation-script: add libc to path to provide nscd
 when needed

---
 nixos/modules/system/activation/activation-script.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/nixos/modules/system/activation/activation-script.nix b/nixos/modules/system/activation/activation-script.nix
index 0ed7c0f53eb9..74c150a848d1 100644
--- a/nixos/modules/system/activation/activation-script.nix
+++ b/nixos/modules/system/activation/activation-script.nix
@@ -22,6 +22,7 @@ let
       gnugrep
       findutils
       getent
+      stdenv.cc.libc # nscd in update-users-groups.pl
       shadow
       nettools # needed for hostname
       utillinux # needed for mount and mountpoint

From 2617b6800d2dd03c9d6e49f5ceef061794fa4771 Mon Sep 17 00:00:00 2001
From: Johan Thomsen <jth@dbc.dk>
Date: Wed, 31 Oct 2018 12:42:51 +0100
Subject: [PATCH 0197/1129] nixos/kubernetes: Replace KubeDNS with CoreDNS

---
 .../services/cluster/kubernetes/dns.nix       | 422 +++++++++---------
 nixos/tests/kubernetes/dns.nix                |   4 +-
 2 files changed, 210 insertions(+), 216 deletions(-)

diff --git a/nixos/modules/services/cluster/kubernetes/dns.nix b/nixos/modules/services/cluster/kubernetes/dns.nix
index 43bbb50a48d4..5a3e281ea694 100644
--- a/nixos/modules/services/cluster/kubernetes/dns.nix
+++ b/nixos/modules/services/cluster/kubernetes/dns.nix
@@ -3,8 +3,13 @@
 with lib;
 
 let
-  version = "1.14.10";
+  version = "1.2.5";
   cfg = config.services.kubernetes.addons.dns;
+  ports = {
+    dns = 10053;
+    health = 10054;
+    metrics = 10055;
+  };
 in {
   options.services.kubernetes.addons.dns = {
     enable = mkEnableOption "kubernetes dns addon";
@@ -27,49 +32,130 @@ in {
       type = types.str;
     };
 
-    kube-dns = mkOption {
-      description = "Docker image to seed for the kube-dns main container.";
-      type = types.attrs;
-      default = {
-        imageName = "k8s.gcr.io/k8s-dns-kube-dns-amd64";
-        imageDigest = "sha256:b99fc3eee2a9f052f7eb4cc00f15eb12fc405fa41019baa2d6b79847ae7284a8";
-        finalImageTag = version;
-        sha256 = "0x583znk9smqn0fix7ld8sm5jgaxhqhx3fq97b1wkqm7iwhvl3pj";
-      };
+    replicas = mkOption {
+      description = "Number of DNS pod replicas to deploy in the cluster.";
+      default = 2;
+      type = types.int;
     };
 
-    dnsmasq-nanny = mkOption {
-      description = "Docker image to seed for the kube-dns dnsmasq container.";
+    coredns = mkOption {
+      description = "Docker image to seed for the CoreDNS container.";
       type = types.attrs;
       default = {
-        imageName = "k8s.gcr.io/k8s-dns-dnsmasq-nanny-amd64";
-        imageDigest = "sha256:bbb2a290a568125b3b996028958eb773f33b5b87a6b37bf38a28f8b62dddb3c8";
+        imageName = "coredns/coredns";
+        imageDigest = "sha256:33c8da20b887ae12433ec5c40bfddefbbfa233d5ce11fb067122e68af30291d6";
         finalImageTag = version;
-        sha256 = "1fihml7s2mfwgac51cbqpylkwbivc8nyhgi4vb820s83zvl8a6y1";
-      };
-    };
-
-    sidecar = mkOption {
-      description = "Docker image to seed for the kube-dns sidecar container.";
-      type = types.attrs;
-      default = {
-        imageName = "k8s.gcr.io/k8s-dns-sidecar-amd64";
-        imageDigest = "sha256:4f1ab957f87b94a5ec1edc26fae50da2175461f00afecf68940c4aa079bd08a4";
-        finalImageTag = version;
-        sha256 = "08l1bv5jgrhvjzpqpbinrkgvv52snc4fzyd8ya9v18ns2klyz7m0";
+        sha256 = "13q19rgwapv27xcs664dw502254yw4zw63insf6g2danidv2mg6i";
       };
     };
   };
 
   config = mkIf cfg.enable {
-    services.kubernetes.kubelet.seedDockerImages = with pkgs.dockerTools; [
-      (pullImage cfg.kube-dns)
-      (pullImage cfg.dnsmasq-nanny)
-      (pullImage cfg.sidecar)
-    ];
+    services.kubernetes.kubelet.seedDockerImages =
+      singleton (pkgs.dockerTools.pullImage cfg.coredns);
 
     services.kubernetes.addonManager.addons = {
-      kubedns-deployment = {
+      coredns-sa = {
+        apiVersion = "v1";
+        kind = "ServiceAccount";
+        metadata = {
+          labels = {
+            "addonmanager.kubernetes.io/mode" = "Reconcile";
+            "k8s-app" = "kube-dns";
+            "kubernetes.io/cluster-service" = "true";
+          };
+          name = "coredns";
+          namespace = "kube-system";
+        };
+      };
+
+      coredns-cr = {
+        apiVersion = "rbac.authorization.k8s.io/v1beta1";
+        kind = "ClusterRole";
+        metadata = {
+          labels = {
+            "addonmanager.kubernetes.io/mode" = "Reconcile";
+            "k8s-app" = "kube-dns";
+            "kubernetes.io/cluster-service" = "true";
+            "kubernetes.io/bootstrapping" = "rbac-defaults";
+          };
+          name = "system:coredns";
+        };
+        rules = [
+          {
+            apiGroups = [ "" ];
+            resources = [ "endpoints" "services" "pods" "namespaces" ];
+            verbs = [ "list" "watch" ];
+          }
+          {
+            apiGroups = [ "" ];
+            resources = [ "nodes" ];
+            verbs = [ "get" ];
+          }
+        ];
+      };
+
+      coredns-crb = {
+        apiVersion = "rbac.authorization.k8s.io/v1beta1";
+        kind = "ClusterRoleBinding";
+        metadata = {
+          annotations = {
+            "rbac.authorization.kubernetes.io/autoupdate" = "true";
+          };
+          labels = {
+            "addonmanager.kubernetes.io/mode" = "Reconcile";
+            "k8s-app" = "kube-dns";
+            "kubernetes.io/cluster-service" = "true";
+            "kubernetes.io/bootstrapping" = "rbac-defaults";
+          };
+          name = "system:coredns";
+        };
+        roleRef = {
+          apiGroup = "rbac.authorization.k8s.io";
+          kind = "ClusterRole";
+          name = "system:coredns";
+        };
+        subjects = [
+          {
+            kind = "ServiceAccount";
+            name = "coredns";
+            namespace = "kube-system";
+          }
+        ];
+      };
+
+      coredns-cm = {
+        apiVersion = "v1";
+        kind = "ConfigMap";
+        metadata = {
+          labels = {
+            "addonmanager.kubernetes.io/mode" = "Reconcile";
+            "k8s-app" = "kube-dns";
+            "kubernetes.io/cluster-service" = "true";
+          };
+          name = "coredns";
+          namespace = "kube-system";
+        };
+        data = {
+          Corefile = ".:${toString ports.dns} {
+            errors
+            health :${toString ports.health}
+            kubernetes ${cfg.clusterDomain} in-addr.arpa ip6.arpa {
+              pods insecure
+              upstream
+              fallthrough in-addr.arpa ip6.arpa
+            }
+            prometheus :${toString ports.metrics}
+            proxy . /etc/resolv.conf
+            cache 30
+            loop
+            reload
+            loadbalance
+          }";
+        };
+      };
+
+      coredns-deploy = {
         apiVersion = "extensions/v1beta1";
         kind = "Deployment";
         metadata = {
@@ -77,182 +163,96 @@ in {
             "addonmanager.kubernetes.io/mode" = "Reconcile";
             "k8s-app" = "kube-dns";
             "kubernetes.io/cluster-service" = "true";
+            "kubernetes.io/name" = "CoreDNS";
           };
-          name = "kube-dns";
+          name = "coredns";
           namespace = "kube-system";
         };
         spec = {
-          selector.matchLabels."k8s-app" = "kube-dns";
+          replicas = cfg.replicas;
+          selector = {
+            matchLabels = { k8s-app = "kube-dns"; };
+          };
           strategy = {
-            rollingUpdate = {
-              maxSurge = "10%";
-              maxUnavailable = 0;
-            };
+            rollingUpdate = { maxUnavailable = 1; };
+            type = "RollingUpdate";
           };
           template = {
             metadata = {
-              annotations."scheduler.alpha.kubernetes.io/critical-pod" = "";
-              labels.k8s-app = "kube-dns";
+              labels = {
+                k8s-app = "kube-dns";
+              };
             };
             spec = {
-              priorityClassName = "system-cluster-critical";
               containers = [
                 {
-                  name = "kubedns";
-                  image = with cfg.kube-dns; "${imageName}:${finalImageTag}";
+                  args = [ "-conf" "/etc/coredns/Corefile" ];
+                  image = with cfg.coredns; "${imageName}:${finalImageTag}";
+                  imagePullPolicy = "Never";
+                  livenessProbe = {
+                    failureThreshold = 5;
+                    httpGet = {
+                      path = "/health";
+                      port = ports.health;
+                      scheme = "HTTP";
+                    };
+                    initialDelaySeconds = 60;
+                    successThreshold = 1;
+                    timeoutSeconds = 5;
+                  };
+                  name = "coredns";
+                  ports = [
+                    {
+                      containerPort = ports.dns;
+                      name = "dns";
+                      protocol = "UDP";
+                    }
+                    {
+                      containerPort = ports.dns;
+                      name = "dns-tcp";
+                      protocol = "TCP";
+                    }
+                    {
+                      containerPort = ports.metrics;
+                      name = "metrics";
+                      protocol = "TCP";
+                    }
+                  ];
                   resources = {
-                    limits.memory = "170Mi";
+                    limits = {
+                      memory = "170Mi";
+                    };
                     requests = {
                       cpu = "100m";
                       memory = "70Mi";
                     };
                   };
-                  livenessProbe = {
-                    failureThreshold = 5;
-                    httpGet = {
-                      path = "/healthcheck/kubedns";
-                      port = 10054;
-                      scheme = "HTTP";
-                    };
-                    initialDelaySeconds = 60;
-                    successThreshold = 1;
-                    timeoutSeconds = 5;
-                  };
-                  readinessProbe = {
-                    httpGet = {
-                      path = "/readiness";
-                      port = 8081;
-                      scheme = "HTTP";
-                    };
-                    initialDelaySeconds = 3;
-                    timeoutSeconds = 5;
-                  };
-                  args = [
-                    "--domain=${cfg.clusterDomain}"
-                    "--dns-port=10053"
-                    "--config-dir=/kube-dns-config"
-                    "--v=2"
-                  ];
-                  env = [
-                    {
-                      name = "PROMETHEUS_PORT";
-                      value = "10055";
-                    }
-                  ];
-                  ports = [
-                    {
-                      containerPort = 10053;
-                      name = "dns-local";
-                      protocol = "UDP";
-                    }
-                    {
-                      containerPort = 10053;
-                      name = "dns-tcp-local";
-                      protocol = "TCP";
-                    }
-                    {
-                      containerPort = 10055;
-                      name = "metrics";
-                      protocol = "TCP";
-                    }
-                  ];
-                  volumeMounts = [
-                    {
-                      mountPath = "/kube-dns-config";
-                      name = "kube-dns-config";
-                    }
-                  ];
-                }
-                {
-                  name = "dnsmasq";
-                  image = with cfg.dnsmasq-nanny; "${imageName}:${finalImageTag}";
-                  livenessProbe = {
-                    httpGet = {
-                      path = "/healthcheck/dnsmasq";
-                      port = 10054;
-                      scheme = "HTTP";
-                    };
-                    initialDelaySeconds = 60;
-                    timeoutSeconds = 5;
-                    successThreshold = 1;
-                    failureThreshold = 5;
-                  };
-                  args = [
-                    "-v=2"
-                    "-logtostderr"
-                    "-configDir=/etc/k8s/dns/dnsmasq-nanny"
-                    "-restartDnsmasq=true"
-                    "--"
-                    "-k"
-                    "--cache-size=1000"
-                    "--log-facility=-"
-                    "--server=/${cfg.clusterDomain}/127.0.0.1#10053"
-                    "--server=/in-addr.arpa/127.0.0.1#10053"
-                    "--server=/ip6.arpa/127.0.0.1#10053"
-                  ];
-                  ports = [
-                    {
-                      containerPort = 53;
-                      name = "dns";
-                      protocol = "UDP";
-                    }
-                    {
-                      containerPort = 53;
-                      name = "dns-tcp";
-                      protocol = "TCP";
-                    }
-                  ];
-                  resources = {
-                    requests = {
-                      cpu = "150m";
-                      memory = "20Mi";
+                  securityContext = {
+                    allowPrivilegeEscalation = false;
+                    capabilities = {
+                      drop = [ "all" ];
                     };
+                    readOnlyRootFilesystem = true;
                   };
                   volumeMounts = [
                     {
-                      mountPath = "/etc/k8s/dns/dnsmasq-nanny";
-                      name = "kube-dns-config";
+                      mountPath = "/etc/coredns";
+                      name = "config-volume";
+                      readOnly = true;
                     }
                   ];
                 }
-                {
-                  name = "sidecar";
-                  image = with cfg.sidecar; "${imageName}:${finalImageTag}";
-                  livenessProbe = {
-                    httpGet = {
-                      path = "/metrics";
-                      port = 10054;
-                      scheme = "HTTP";
-                    };
-                    initialDelaySeconds = 60;
-                    timeoutSeconds = 5;
-                    successThreshold = 1;
-                    failureThreshold = 5;
-                  };
-                  args = [
-                    "--v=2"
-                    "--logtostderr"
-                    "--probe=kubedns,127.0.0.1:10053,kubernetes.default.svc.${cfg.clusterDomain},5,A"
-                    "--probe=dnsmasq,127.0.0.1:53,kubernetes.default.svc.${cfg.clusterDomain},5,A"
-                  ];
-                  ports = [
-                    {
-                      containerPort = 10054;
-                      name = "metrics";
-                      protocol = "TCP";
-                    }
-                  ];
-                  resources = {
-                    requests = {
-                      cpu = "10m";
-                      memory = "20Mi";
-                    };
-                  };
-                }
               ];
               dnsPolicy = "Default";
-              serviceAccountName = "kube-dns";
+              nodeSelector = {
+                "beta.kubernetes.io/os" = "linux";
+              };
+              serviceAccountName = "coredns";
               tolerations = [
+                {
+                  effect = "NoSchedule";
+                  key = "node-role.kubernetes.io/master";
+                }
                 {
                   key = "CriticalAddonsOnly";
                   operator = "Exists";
@@ -261,10 +261,15 @@ in {
               volumes = [
                 {
                   configMap = {
-                    name = "kube-dns";
-                    optional = true;
+                    items = [
+                      {
+                        key = "Corefile";
+                        path = "Corefile";
+                      }
+                    ];
+                    name = "coredns";
                   };
-                  name = "kube-dns-config";
+                  name = "config-volume";
                 }
               ];
             };
@@ -272,51 +277,40 @@ in {
         };
       };
 
-      kubedns-svc = {
+      coredns-svc = {
         apiVersion = "v1";
         kind = "Service";
         metadata = {
+          annotations = {
+            "prometheus.io/port" = toString ports.metrics;
+            "prometheus.io/scrape" = "true";
+          };
           labels = {
             "addonmanager.kubernetes.io/mode" = "Reconcile";
             "k8s-app" = "kube-dns";
             "kubernetes.io/cluster-service" = "true";
-            "kubernetes.io/name" = "KubeDNS";
+            "kubernetes.io/name" = "CoreDNS";
           };
           name = "kube-dns";
-          namespace  = "kube-system";
+          namespace = "kube-system";
         };
         spec = {
           clusterIP = cfg.clusterIp;
           ports = [
-            {name = "dns"; port = 53; protocol = "UDP";}
-            {name = "dns-tcp"; port = 53; protocol = "TCP";}
+            {
+              name = "dns";
+              port = 53;
+              targetPort = ports.dns;
+              protocol = "UDP";
+            }
+            {
+              name = "dns-tcp";
+              port = 53;
+              targetPort = ports.dns;
+              protocol = "TCP";
+            }
           ];
-          selector.k8s-app = "kube-dns";
-        };
-      };
-
-      kubedns-sa = {
-        apiVersion = "v1";
-        kind = "ServiceAccount";
-        metadata = {
-          name = "kube-dns";
-          namespace = "kube-system";
-          labels = {
-            "kubernetes.io/cluster-service" = "true";
-            "addonmanager.kubernetes.io/mode" = "Reconcile";
-          };
-        };
-      };
-
-      kubedns-cm = {
-        apiVersion = "v1";
-        kind = "ConfigMap";
-        metadata = {
-          name = "kube-dns";
-          namespace = "kube-system";
-          labels = {
-            "addonmanager.kubernetes.io/mode" = "EnsureExists";
-          };
+          selector = { k8s-app = "kube-dns"; };
         };
       };
     };
diff --git a/nixos/tests/kubernetes/dns.nix b/nixos/tests/kubernetes/dns.nix
index 30e1acd255a0..f25ea5b9ed84 100644
--- a/nixos/tests/kubernetes/dns.nix
+++ b/nixos/tests/kubernetes/dns.nix
@@ -87,7 +87,7 @@ let
       # check if pods are running
       $machine1->waitUntilSucceeds("kubectl get pod redis | grep Running");
       $machine1->waitUntilSucceeds("kubectl get pod probe | grep Running");
-      $machine1->waitUntilSucceeds("kubectl get pods -n kube-system | grep 'kube-dns.*3/3'");
+      $machine1->waitUntilSucceeds("kubectl get pods -n kube-system | grep 'coredns.*1/1'");
 
       # check dns on host (dnsmasq)
       $machine1->succeed("host redis.default.svc.cluster.local");
@@ -111,7 +111,7 @@ let
       # check if pods are running
       $machine1->waitUntilSucceeds("kubectl get pod redis | grep Running");
       $machine1->waitUntilSucceeds("kubectl get pod probe | grep Running");
-      $machine1->waitUntilSucceeds("kubectl get pods -n kube-system | grep 'kube-dns.*3/3'");
+      $machine1->waitUntilSucceeds("kubectl get pods -n kube-system | grep 'coredns.*1/1'");
 
       # check dns on hosts (dnsmasq)
       $machine1->succeed("host redis.default.svc.cluster.local");

From eea2db124011fbcaa480003b43e0c7255031b730 Mon Sep 17 00:00:00 2001
From: Johan Thomsen <jth@dbc.dk>
Date: Wed, 31 Oct 2018 13:01:14 +0100
Subject: [PATCH 0198/1129] nixos/kubernetes: Added rl-1903 entry documenting
 kubedns -> coredns

---
 nixos/doc/manual/release-notes/rl-1903.xml | 13 +++++++++++++
 1 file changed, 13 insertions(+)

diff --git a/nixos/doc/manual/release-notes/rl-1903.xml b/nixos/doc/manual/release-notes/rl-1903.xml
index 1d9b6ecc0e2e..fc38de2f7273 100644
--- a/nixos/doc/manual/release-notes/rl-1903.xml
+++ b/nixos/doc/manual/release-notes/rl-1903.xml
@@ -199,6 +199,19 @@
      supports loading TrueCrypt volumes.
     </para>
    </listitem>
+   <listitem>
+    <para>
+      The Kubernetes DNS addons, kube-dns, has been replaced with CoreDNS.
+      This change is made in accordance with Kubernetes making CoreDNS the official default
+      starting from
+      <link xlink:href="https://github.com/kubernetes/kubernetes/blob/master/CHANGELOG-1.11.md#sig-cluster-lifecycle">Kubernetes v1.11</link>.
+      Please beware that upgrading DNS-addon on existing clusters might induce
+      minor downtime while the DNS-addon terminates and re-initializes.
+      Also note that the DNS-service now runs with 2 pod replicas by default.
+      The desired number of replicas can be configured using:
+      <option>services.kubernetes.addons.dns.replicas</option>.
+    </para>
+   </listitem>
   </itemizedlist>
  </section>
 </section>

From cd1ff3beded0ca8fcb7afd63df83ba0df1ee3eb4 Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Fri, 26 Oct 2018 14:00:23 +0000
Subject: [PATCH 0199/1129] python3Packages.aiohttp_remotes: init at 0.1.2

---
 .../aiohttp-remotes/default.nix               | 34 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 36 insertions(+)
 create mode 100644 pkgs/development/python-modules/aiohttp-remotes/default.nix

diff --git a/pkgs/development/python-modules/aiohttp-remotes/default.nix b/pkgs/development/python-modules/aiohttp-remotes/default.nix
new file mode 100644
index 000000000000..51120d07121c
--- /dev/null
+++ b/pkgs/development/python-modules/aiohttp-remotes/default.nix
@@ -0,0 +1,34 @@
+{ lib, fetchpatch, buildPythonPackage, fetchPypi
+, aiohttp, pytest, pytestcov, pytest-aiohttp
+}:
+
+buildPythonPackage rec {
+  pname = "aiohttp_remotes";
+  version = "0.1.2";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "43c3f7e1c5ba27f29fb4dbde5d43b900b5b5fc7e37bf7e35e6eaedabaec4a3fc";
+  };
+
+  patches = [
+    (fetchpatch {
+      url = https://github.com/aio-libs/aiohttp-remotes/commit/188772abcea038c31dae7d607e487eeed44391bc.patch;
+      sha256 = "0pb1y4jb8ar1szhnjiyj2sdmdk6z9h6c3wrxw59nv9kr3if5igvs";
+    })
+  ];
+
+  propagatedBuildInputs = [ aiohttp ];
+
+  checkInputs = [ pytest pytestcov pytest-aiohttp ];
+  checkPhase = ''
+    python -m pytest
+  '';
+
+  meta = with lib; {
+    homepage = https://github.com/wikibusiness/aiohttp-remotes;
+    description = "A set of useful tools for aiohttp.web server";
+    license = licenses.mit;
+    maintainers = [ maintainers.qyliss ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index e732eb38bb38..98afb6396313 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -708,6 +708,8 @@ in {
 
   aiohttp-jinja2 = callPackage ../development/python-modules/aiohttp-jinja2 { };
 
+  aiohttp-remotes = callPackage ../development/python-modules/aiohttp-remotes { };
+
   aioprocessing = callPackage ../development/python-modules/aioprocessing { };
 
   ajpy = callPackage ../development/python-modules/ajpy { };

From 6ff17834db3383410145c816085d816fc16790ee Mon Sep 17 00:00:00 2001
From: Timo Kaufmann <timokau@zoho.com>
Date: Wed, 31 Oct 2018 14:32:08 +0100
Subject: [PATCH 0200/1129] youtube-dl: 2018.10.05 -> 2018.10.29

---
 pkgs/tools/misc/youtube-dl/default.nix | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/misc/youtube-dl/default.nix b/pkgs/tools/misc/youtube-dl/default.nix
index 9de0f850d49b..8c08ee65805c 100644
--- a/pkgs/tools/misc/youtube-dl/default.nix
+++ b/pkgs/tools/misc/youtube-dl/default.nix
@@ -16,11 +16,14 @@
 buildPythonPackage rec {
 
   pname = "youtube-dl";
-  version = "2018.10.05";
+  # The websites youtube-dl deals with are a very moving target. That means that
+  # downloads break constantly. Because of that, updates should always be backported
+  # to the latest stable release.
+  version = "2018.10.29";
 
   src = fetchurl {
     url = "https://yt-dl.org/downloads/${version}/${pname}-${version}.tar.gz";
-    sha256 = "1iq02kwxdgh07bf0w0fvbsjbdshs4kja35gy8m70ji9cj10l1mbw";
+    sha256 = "1ndkkpnmjdyz5gjjmvaf18761lxa2c0kypicm9bpqpaj7sdr9s27";
   };
 
   nativeBuildInputs = [ makeWrapper ];

From c8c77476dc32afd42b6ac511c9895db7d93b1bc9 Mon Sep 17 00:00:00 2001
From: CharlesHD <charleshdespointes@gmail.com>
Date: Tue, 30 Oct 2018 16:01:56 +0100
Subject: [PATCH 0201/1129] cmusfm: init at 2018-10-11

---
 pkgs/applications/audio/cmusfm/default.nix | 36 ++++++++++++++++++++++
 pkgs/top-level/all-packages.nix            |  2 ++
 2 files changed, 38 insertions(+)
 create mode 100644 pkgs/applications/audio/cmusfm/default.nix

diff --git a/pkgs/applications/audio/cmusfm/default.nix b/pkgs/applications/audio/cmusfm/default.nix
new file mode 100644
index 000000000000..e528e9699a73
--- /dev/null
+++ b/pkgs/applications/audio/cmusfm/default.nix
@@ -0,0 +1,36 @@
+{ stdenv, fetchFromGitHub, autoreconfHook, pkgconfig, curl, libnotify, gdk_pixbuf }:
+
+stdenv.mkDerivation rec {
+  version = "2018-10-11";
+  name = "cmusfm-unstable-${version}";
+  src = fetchFromGitHub {
+    owner = "Arkq";
+    repo = "cmusfm";
+    rev = "ad2fd0aad3f4f1a25add1b8c2f179e8859885873";
+    sha256 = "0wpwdwgyrp64nvwc6shy0n387p31j6aw6cnmfi9x2y1jhl5hbv6b";
+  };
+  # building
+  configureFlags = [ "--enable-libnotify" ];
+  nativeBuildInputs = [ autoreconfHook pkgconfig ];
+  buildInputs = [ curl libnotify gdk_pixbuf ];
+
+  meta = with stdenv.lib; {
+    description = "Last.fm and Libre.fm standalone scrobbler for the cmus music player";
+    longDescription = ''
+      Features:
+      + Listening now notification support
+      + Off-line played track cache for later submission
+      + POSIX ERE-based file name parser
+      + Desktop notification support (optionally)
+      + Customizable scrobbling service
+      + Small memory footprint
+      Configuration:
+      + run `cmusfm init` to generate configuration file under ~/.config/cmus/cmusfm.conf
+      + Inside cmus run `:set status_display_program=cmusfm` to set up cmusfm
+    '';
+    homepage = https://github.com/Arkq/cmusfm/;
+    maintainers = with stdenv.lib.maintainers; [ CharlesHD ];
+    license = licenses.gpl3Plus;
+    platforms = platforms.linux ++ platforms.darwin;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index f98bf64fdf7b..455620eedb17 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -16052,6 +16052,8 @@ with pkgs;
     pulseaudioSupport = config.pulseaudio or false;
   };
 
+  cmusfm = callPackage ../applications/audio/cmusfm { };
+
   cni = callPackage ../applications/networking/cluster/cni {};
   cni-plugins = callPackage ../applications/networking/cluster/cni/plugins.nix {};
 

From a7912ecc85af6cd9091eb913a114a08baf5312e6 Mon Sep 17 00:00:00 2001
From: Franz Pletz <fpletz@fnordicwalking.de>
Date: Wed, 31 Oct 2018 16:12:00 +0100
Subject: [PATCH 0202/1129] systemd: 239 -> 239.20181031

Fixes CVE-2018-15688 and updates latest upstream stable v239 branch.

See https://github.com/NixOS/systemd/pull/24 for details.

Co-authored-by: Andreas Rammhold <andreas@rammhold.de>
---
 pkgs/os-specific/linux/systemd/default.nix | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/pkgs/os-specific/linux/systemd/default.nix b/pkgs/os-specific/linux/systemd/default.nix
index db64b8e6f6de..2a17a0a2875f 100644
--- a/pkgs/os-specific/linux/systemd/default.nix
+++ b/pkgs/os-specific/linux/systemd/default.nix
@@ -18,7 +18,7 @@ let
   pythonLxmlEnv = buildPackages.python3Packages.python.withPackages ( ps: with ps; [ python3Packages.lxml ]);
 
 in stdenv.mkDerivation rec {
-  version = "239";
+  version = "239.20181031";
   name = "systemd-${version}";
 
   # When updating, use https://github.com/systemd/systemd-stable tree, not the development one!
@@ -26,8 +26,8 @@ in stdenv.mkDerivation rec {
   src = fetchFromGitHub {
     owner = "NixOS";
     repo = "systemd";
-    rev = "31859ddd35fc3fa82a583744caa836d356c31d7f";
-    sha256 = "1xci0491j95vdjgs397n618zii3sgwnvanirkblqqw6bcvcjvir1";
+    rev = "nixos-v${version}";
+    sha256 = "1rzl0iqrpa4ajvama5k3cb3yc7893c55kzcxkl3cyavpdzsw5505";
   };
 
   outputs = [ "out" "lib" "man" "dev" ];
@@ -91,6 +91,7 @@ in stdenv.mkDerivation rec {
     "-Dsulogin-path=${utillinux}/bin/sulogin"
     "-Dmount-path=${utillinux}/bin/mount"
     "-Dumount-path=${utillinux}/bin/umount"
+    "-Ddns-over-tls=false"
   ];
 
   preConfigure = ''

From 8798de63fb0c4bf1680d5ba771052d5f2d00ee15 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Wed, 31 Oct 2018 08:46:48 -0500
Subject: [PATCH 0203/1129] gitAndTools.grv: 0.2.0 -> 0.3.0

Remove 'update_latest_release.go' so we don't try to build it
since this fails due to unmet dependencies.

AFAICT this utility is only meant for developer use anyway,
and helps manage/create new github releases for the project.
---
 .../version-management/git-and-tools/grv/default.nix      | 8 ++++++--
 1 file changed, 6 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/version-management/git-and-tools/grv/default.nix b/pkgs/applications/version-management/git-and-tools/grv/default.nix
index 962ddf98d6ce..dd080799557b 100644
--- a/pkgs/applications/version-management/git-and-tools/grv/default.nix
+++ b/pkgs/applications/version-management/git-and-tools/grv/default.nix
@@ -1,6 +1,6 @@
 { stdenv, buildGo19Package, fetchFromGitHub, curl, libgit2_0_27, ncurses, pkgconfig, readline }:
 let
-  version = "0.2.0";
+  version = "0.3.0";
 in
 buildGo19Package {
   name = "grv-${version}";
@@ -14,10 +14,14 @@ buildGo19Package {
     owner = "rgburke";
     repo = "grv";
     rev = "v${version}";
-    sha256 = "0hlqw6b51jglqzzjgazncckpgarp25ghshl0lxv1mff80jg8wd1a";
+    sha256 = "00v502mwnpv09l7fsbq3s72i5fz5dxbildwxgw0r8zzf6d54xrgl";
     fetchSubmodules = true;
   };
 
+  postPatch = ''
+    rm util/update_latest_release.go
+  '';
+
   buildFlagsArray = [ "-ldflags=" "-X main.version=${version}" ];
 
   meta = with stdenv.lib; {

From 0f601b7f76bd575ec6256dd5c6a686e6af491e21 Mon Sep 17 00:00:00 2001
From: Bart Brouns <bart@magnetophon.nl>
Date: Wed, 31 Oct 2018 18:26:46 +0100
Subject: [PATCH 0204/1129] wolf-shaper: init at 0.1.6 (#49087)

---
 .../audio/wolf-shaper/default.nix             | 47 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 2 files changed, 49 insertions(+)
 create mode 100644 pkgs/applications/audio/wolf-shaper/default.nix

diff --git a/pkgs/applications/audio/wolf-shaper/default.nix b/pkgs/applications/audio/wolf-shaper/default.nix
new file mode 100644
index 000000000000..562fdc1be8b6
--- /dev/null
+++ b/pkgs/applications/audio/wolf-shaper/default.nix
@@ -0,0 +1,47 @@
+{ stdenv, fetchFromGitHub , libjack2, lv2, xorg, liblo, libGL, libXcursor, pkgconfig }:
+
+stdenv.mkDerivation rec {
+  name = "wolf-shaper-${version}";
+  version = "0.1.6";
+
+  src = fetchFromGitHub {
+    owner = "pdesaulniers";
+    repo = "wolf-shaper";
+    rev = "v${version}";
+    sha256 = "01h5dm1nrr0i54ancwznr7wn4vpw08dw0b69v3axy32r5j7plw6s";
+    fetchSubmodules = true;
+  };
+
+  nativeBuildInputs = [ pkgconfig ];
+  buildInputs = [ libjack2 lv2 xorg.libX11 liblo libGL libXcursor  ];
+
+  makeFlags = [
+    "BUILD_LV2=true"
+    "BUILD_DSSI=true"
+    "BUILD_VST2=true"
+    "BUILD_JACK=true"
+  ];
+
+  patchPhase = ''
+    patchShebangs ./dpf/utils/generate-ttl.sh
+  '';
+
+  installPhase = ''
+    mkdir -p $out/lib/lv2
+    mkdir -p $out/lib/dssi
+    mkdir -p $out/lib/vst
+    mkdir -p $out/bin/
+    cp -r bin/wolf-shaper.lv2    $out/lib/lv2/
+    cp -r bin/wolf-shaper-dssi*  $out/lib/dssi/
+    cp -r bin/wolf-shaper-vst.so $out/lib/vst/
+    cp -r bin/wolf-shaper        $out/bin/
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = https://pdesaulniers.github.io/wolf-shaper/;
+    description = "Waveshaper plugin with spline-based graph editor";
+    license = licenses.gpl3;
+    maintainers = [ maintainers.magnetophon ];
+    platforms = [ "i686-linux" "x86_64-linux" ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 938838dd1c2d..b01682996991 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -6188,6 +6188,8 @@ with pkgs;
 
   wol = callPackage ../tools/networking/wol { };
 
+  wolf-shaper = callPackage ../applications/audio/wolf-shaper { };
+
   wring = nodePackages.wring;
 
   wrk = callPackage ../tools/networking/wrk { };

From 98fd559eaa67803eba19f32be4dd4347b1cbc340 Mon Sep 17 00:00:00 2001
From: Will Dietz <github@wdtz.org>
Date: Wed, 31 Oct 2018 12:36:08 -0500
Subject: [PATCH 0205/1129] strace: 4.24 -> 4.25 (#49518)

https://github.com/strace/strace/releases/tag/v4.25
---
 pkgs/development/tools/misc/strace/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/tools/misc/strace/default.nix b/pkgs/development/tools/misc/strace/default.nix
index 33a46e16a3ab..e2022156870d 100644
--- a/pkgs/development/tools/misc/strace/default.nix
+++ b/pkgs/development/tools/misc/strace/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "strace-${version}";
-  version = "4.24";
+  version = "4.25";
 
   src = fetchurl {
     url = "https://strace.io/files/${version}/${name}.tar.xz";
-    sha256 = "0d061cdzk6a1822ds4wpqxg10ny27mi4i9zjmnsbz8nz3vy5jkhz";
+    sha256 = "00f7zagfh3np5gwi0z7hi7zjd7s5nixcaq7z78n87dvhakkgi1fn";
   };
 
   depsBuildBuild = [ buildPackages.stdenv.cc ];

From 56b88fb03f3e3d7a0e34f27e8d6558bfd649d077 Mon Sep 17 00:00:00 2001
From: Bart Brouns <bart@magnetophon.nl>
Date: Wed, 31 Oct 2018 18:39:34 +0100
Subject: [PATCH 0206/1129] gxplugins-lv2: init at 0.5 (#48847)

---
 .../audio/gxplugins-lv2/default.nix           | 29 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 31 insertions(+)
 create mode 100644 pkgs/applications/audio/gxplugins-lv2/default.nix

diff --git a/pkgs/applications/audio/gxplugins-lv2/default.nix b/pkgs/applications/audio/gxplugins-lv2/default.nix
new file mode 100644
index 000000000000..e7e4744eea2f
--- /dev/null
+++ b/pkgs/applications/audio/gxplugins-lv2/default.nix
@@ -0,0 +1,29 @@
+{ stdenv, fetchFromGitHub, xorg, xproto, cairo, lv2, pkgconfig }:
+
+stdenv.mkDerivation rec {
+  name = "${pname}-${version}";
+  pname = "GxPlugins.lv2";
+  version = "0.5";
+
+  src = fetchFromGitHub {
+    owner = "brummer10";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "16r5bj7w726d9327flg530fn0bli4crkxjss7i56yhb1bsi39mbv";
+    fetchSubmodules = true;
+  };
+
+  nativeBuildInputs = [ pkgconfig ];
+  buildInputs = [
+    xorg.libX11 xproto cairo lv2
+  ];
+
+  installFlags = [ "INSTALL_DIR=$(out)/lib/lv2" ];
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/brummer10/GxPlugins.lv2;
+    description = "A set of extra lv2 plugins from the guitarix project";
+    maintainers = [ maintainers.magnetophon ];
+    license = licenses.gpl3;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index b01682996991..9ceb1b7dc636 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -17158,6 +17158,8 @@ with pkgs;
 
   gxmessage = callPackage ../applications/misc/gxmessage { };
 
+  gxplugins-lv2 = callPackage ../applications/audio/gxplugins-lv2 { };
+
   hackrf = callPackage ../applications/misc/hackrf { };
 
   hakuneko = callPackage ../tools/misc/hakuneko { };

From 1f1bd5c8e8050ee07c1ffae24359f5ee26c58a68 Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Fri, 26 Oct 2018 14:01:25 +0000
Subject: [PATCH 0207/1129] python3Packages.aioh2: init at 0.2.2

Tests skipped due to https://github.com/decentfox/aioh2/issues/17.
---
 .../python-modules/aioh2/default.nix          | 23 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 25 insertions(+)
 create mode 100644 pkgs/development/python-modules/aioh2/default.nix

diff --git a/pkgs/development/python-modules/aioh2/default.nix b/pkgs/development/python-modules/aioh2/default.nix
new file mode 100644
index 000000000000..fdeb5fb0082e
--- /dev/null
+++ b/pkgs/development/python-modules/aioh2/default.nix
@@ -0,0 +1,23 @@
+{ lib, buildPythonPackage, isPy3k, fetchPypi, h2, priority }:
+
+buildPythonPackage rec {
+  pname = "aioh2";
+  version = "0.2.2";
+  disabled = !isPy3k;
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "03i24wzpw0mrnrpck3w6qy83iigwl7n99sdrndqzxfyrc69b99wd";
+  };
+
+  propagatedBuildInputs = [ h2 priority ];
+
+  doCheck = false; # https://github.com/decentfox/aioh2/issues/17
+
+  meta = with lib; {
+    homepage = https://github.com/decentfox/aioh2;
+    description = "HTTP/2 implementation with hyper-h2 on Python 3 asyncio";
+    license = licenses.bsd3;
+    maintainers = [ maintainers.qyliss ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 98afb6396313..1d5ff1778df0 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -702,6 +702,8 @@ in {
 
   aiofiles = callPackage ../development/python-modules/aiofiles { };
 
+  aioh2 = callPackage ../development/python-modules/aioh2 { };
+
   aiohttp = callPackage ../development/python-modules/aiohttp { };
 
   aiohttp-cors = callPackage ../development/python-modules/aiohttp/cors.nix { };

From 39edfe5a2dbf1a128e0d36754b7a200dce5dba1d Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Fri, 26 Oct 2018 14:31:35 +0000
Subject: [PATCH 0208/1129] doh-proxy: init at 0.0.8

---
 pkgs/servers/dns/doh-proxy/default.nix | 22 ++++++++++++++++++++++
 pkgs/top-level/all-packages.nix        |  2 ++
 2 files changed, 24 insertions(+)
 create mode 100644 pkgs/servers/dns/doh-proxy/default.nix

diff --git a/pkgs/servers/dns/doh-proxy/default.nix b/pkgs/servers/dns/doh-proxy/default.nix
new file mode 100644
index 000000000000..ac44dbbf04d1
--- /dev/null
+++ b/pkgs/servers/dns/doh-proxy/default.nix
@@ -0,0 +1,22 @@
+{ lib, python3Packages }:
+
+python3Packages.buildPythonApplication rec {
+  pname = "doh-proxy";
+  version = "0.0.8";
+
+  src = python3Packages.fetchPypi {
+    inherit pname version;
+    sha256 = "0mfl84mcklby6cnsw29kpcxj7mh1cx5yw6mjs4sidr1psyni7x6c";
+  };
+
+  propagatedBuildInputs = with python3Packages;
+    [ aioh2 dnspython aiohttp-remotes pytestrunner flake8 ];
+  doCheck = false; # Trouble packaging unittest-data-provider
+
+  meta = with lib; {
+    homepage = https://facebookexperimental.github.io/doh-proxy/;
+    description = "A proof of concept DNS-Over-HTTPS proxy";
+    license = licenses.bsd3;
+    maintainers = [ maintainers.qyliss ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 3ace934df957..244af7305404 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -13208,6 +13208,8 @@ with pkgs;
 
   dex-oidc = callPackage ../servers/dex { };
 
+  doh-proxy = callPackage ../servers/dns/doh-proxy { };
+
   dgraph = callPackage ../servers/dgraph { };
 
   dico = callPackage ../servers/dico { };

From c6fc3bb7fc5f32207a95cc109244e4a49cbd8743 Mon Sep 17 00:00:00 2001
From: Maximilian Bosch <maximilian@mbosch.me>
Date: Wed, 31 Oct 2018 18:47:41 +0100
Subject: [PATCH 0209/1129] python3Packages.gplaycli: 3.21 -> 3.25 (#49521)

The version 3.21 isn't compatible with our currently packaged
`pythonPackages.gpapi` which is now at version 0.4.3.

See https://hydra.nixos.org/build/83154918
---
 pkgs/development/python-modules/gplaycli/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/development/python-modules/gplaycli/default.nix b/pkgs/development/python-modules/gplaycli/default.nix
index 0a8826934089..0c7fa8db01c5 100644
--- a/pkgs/development/python-modules/gplaycli/default.nix
+++ b/pkgs/development/python-modules/gplaycli/default.nix
@@ -4,18 +4,18 @@
 
 buildPythonPackage rec {
   pname = "gplaycli";
-  version = "3.21";
+  version = "3.25";
 
   src = fetchFromGitHub {
     owner = "matlink";
     repo = "gplaycli";
     rev = version;
-    sha256 = "1r5nzi9yzswam0866gypjcvv3f1rw13jwx9s49chp8byxy1dyrs2";
+    sha256 = "1rygx5cg4b1vwpkiaq6jcpbc1ly7cspslv3sy7x8n8ba61ryq6h4";
   };
 
- disabled = !isPy3k;
+  disabled = !isPy3k;
 
- propagatedBuildInputs = [ libffi pyasn1 clint ndg-httpsclient protobuf requests args gpapi pyaxmlparser ];
+  propagatedBuildInputs = [ libffi pyasn1 clint ndg-httpsclient protobuf requests args gpapi pyaxmlparser ];
 
   meta = with stdenv.lib; {
     homepage = https://github.com/matlink/gplaycli;

From f9a8abe86b85a6a87a1a374192ed6f8f9218137c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Dani=C3=ABl=20de=20Kok?= <me@github.danieldk.eu>
Date: Wed, 31 Oct 2018 18:49:32 +0100
Subject: [PATCH 0210/1129] hugo: 0.49.2 -> 0.50 (#49525)

Changelog: https://github.com/gohugoio/hugo/releases/tag/v0.50
---
 pkgs/applications/misc/hugo/default.nix | 13 +++----------
 pkgs/applications/misc/hugo/deps.nix    | 16 ++++++++--------
 2 files changed, 11 insertions(+), 18 deletions(-)

diff --git a/pkgs/applications/misc/hugo/default.nix b/pkgs/applications/misc/hugo/default.nix
index 29b6e41a90df..22badfc8cdd1 100644
--- a/pkgs/applications/misc/hugo/default.nix
+++ b/pkgs/applications/misc/hugo/default.nix
@@ -1,8 +1,8 @@
-{ stdenv, buildGoPackage, fetchFromGitHub, fetchpatch }:
+{ stdenv, buildGoPackage, fetchFromGitHub }:
 
 buildGoPackage rec {
   name = "hugo-${version}";
-  version = "0.49.2";
+  version = "0.50";
 
   goPackagePath = "github.com/gohugoio/hugo";
 
@@ -10,16 +10,9 @@ buildGoPackage rec {
     owner  = "gohugoio";
     repo   = "hugo";
     rev    = "v${version}";
-    sha256 = "0a320mv6x770vppbz0aw5ikywmy0mxqq1lhc0syp48hgg42d46is";
+    sha256 = "1shrw7pxwrz9g5x9bq6k5qvhn3fqmwznadpw7i07msh97p8b3dyn";
   };
 
-  patches = [
-    (fetchpatch {
-      url = "https://github.com/gohugoio/hugo/commit/b137ad4dbd6d14d0a9af68c044aaee61f2c87fe5.diff";
-      sha256 = "0w1gpg11idqywqcpwzvx4xabn02kk8y4jmyz4h67mc3yh2dhq3ll";
-    })
-  ];
-
   goDeps = ./deps.nix;
 
   buildFlags = "-tags extended";
diff --git a/pkgs/applications/misc/hugo/deps.nix b/pkgs/applications/misc/hugo/deps.nix
index 002fb6351b8b..d5c24d69048a 100644
--- a/pkgs/applications/misc/hugo/deps.nix
+++ b/pkgs/applications/misc/hugo/deps.nix
@@ -555,8 +555,8 @@
     fetch = {
       type = "git";
       url = "https://github.com/spf13/jwalterweatherman";
-      rev = "4a4406e478ca";
-      sha256 = "093fmmvavv84pv4q84hav7ph3fmrq87bvspjj899q0qsx37yvdr8";
+      rev = "94f6ae3ed3bc";
+      sha256 = "1ywmkwci5zyd88ijym6f30fj5c0k2yayxarkmnazf5ybljv50q7b";
     };
   }
 
@@ -605,8 +605,8 @@
     fetch = {
       type = "git";
       url = "https://github.com/tdewolff/minify";
-      rev = "v2.3.5";
-      sha256 = "0x67kgjhc6mfzjhr4xmw0j3qapzhkgwwahvv5b44rb449ml2qx5m";
+      rev = "v2.3.6";
+      sha256 = "0p4v4ab49lm5y438k5aks06fpiagbjw2j2x7i8jaa273mkgicrbb";
     };
   }
 
@@ -615,8 +615,8 @@
     fetch = {
       type = "git";
       url = "https://github.com/tdewolff/parse";
-      rev = "v2.3.3";
-      sha256 = "190y2jykp8qyp6y58ky1v1fvmaqjnrsr1ksbqrrspf1gpjy69i94";
+      rev = "fced451e0bed";
+      sha256 = "1n6wcapk8xbck2zjxd4l5cgfn1v12rr7znrdpd5y2xp1nc3739c3";
     };
   }
 
@@ -625,8 +625,8 @@
     fetch = {
       type = "git";
       url = "https://github.com/tdewolff/test";
-      rev = "265427085153";
-      sha256 = "1h0cmsjjia92w50dzr06c5h10zd5c7snhpixqjv94wbl7dv80yp0";
+      rev = "v1.0.0";
+      sha256 = "10vyp4bhanzg3yl9k8zqfdrxpsmx8yc53xv4lqxfymd7jjyqgssj";
     };
   }
 

From a9202796ec3e15c8311b4a88230a12c163c5b92d Mon Sep 17 00:00:00 2001
From: baracoder <baracoder@googlemail.com>
Date: Wed, 31 Oct 2018 18:53:51 +0100
Subject: [PATCH 0211/1129] smartgithg: 18.1.4 -> 18.1.5 (#49527)

Bugfix version
---
 pkgs/applications/version-management/smartgithg/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/version-management/smartgithg/default.nix b/pkgs/applications/version-management/smartgithg/default.nix
index 106b66bcfecb..d6ae37c3f7fa 100644
--- a/pkgs/applications/version-management/smartgithg/default.nix
+++ b/pkgs/applications/version-management/smartgithg/default.nix
@@ -7,11 +7,11 @@
 
 stdenv.mkDerivation rec {
   name = "smartgithg-${version}";
-  version = "18_1_4";
+  version = "18_1_5";
 
   src = fetchurl {
     url = "https://www.syntevo.com/downloads/smartgit/smartgit-linux-${version}.tar.gz";
-    sha256 = "18gyfcs5g7xq8fqnn1zjzx350jaynrniain0giay8sxych12p4cm";
+    sha256 = "0f2aj3259jvn7n0x6m8sbwliikln9lqffd00jg75dblhxwl8adg3";
   };
 
   nativeBuildInputs = [ makeWrapper ];

From 41880aea09cb38dd03f02ef3ac5f919dcb12096d Mon Sep 17 00:00:00 2001
From: "Tristan Helmich (omniIT)" <tristan.helmich@omniit.de>
Date: Wed, 31 Oct 2018 18:59:32 +0100
Subject: [PATCH 0212/1129] saml2aws: 2.6.1 -> 2.10.0

---
 pkgs/tools/security/saml2aws/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/security/saml2aws/default.nix b/pkgs/tools/security/saml2aws/default.nix
index 047706cd8a68..e90517f1581b 100644
--- a/pkgs/tools/security/saml2aws/default.nix
+++ b/pkgs/tools/security/saml2aws/default.nix
@@ -2,7 +2,7 @@
 
 buildGoPackage rec {
   name = "saml2aws-${version}";
-  version = "2.6.1";
+  version = "2.10.0";
 
   goPackagePath = "github.com/versent/saml2aws";
   goDeps = ./deps.nix;
@@ -15,7 +15,7 @@ buildGoPackage rec {
     rev = "v${version}";
     owner = "Versent";
     repo = "saml2aws";
-    sha256 = "0sg5qm1gyrisna247lmxfgpa22y6rnz9vd6yg92kxlcwr4ji8l1j";
+    sha256 = "00m8x57fgry601w5f9dxnxdqbbqjiv7c0rsx47iv9qsp0w7l50c5";
   };
 
   meta = with stdenv.lib; {

From 30c92945a4e403bbe14eb3fca7a6c36ad80ab77c Mon Sep 17 00:00:00 2001
From: qolii <qoli@protonmail.com>
Date: Tue, 30 Oct 2018 23:14:54 -0700
Subject: [PATCH 0213/1129] eternal-terminal: 5.1.7 -> 5.1.8.

---
 pkgs/tools/networking/eternal-terminal/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/networking/eternal-terminal/default.nix b/pkgs/tools/networking/eternal-terminal/default.nix
index 36bc2a9bc284..9d21e7a26736 100644
--- a/pkgs/tools/networking/eternal-terminal/default.nix
+++ b/pkgs/tools/networking/eternal-terminal/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "eternal-terminal-${version}";
-  version = "5.1.7";
+  version = "5.1.8";
 
   src = fetchFromGitHub {
     owner = "MisterTea";
     repo = "EternalTCP";
     rev = "refs/tags/et-v${version}";
-    sha256 = "17ndpkpyh8hwr6v7ac6029sja95nhn9c1g8r93g20rp0vz3r6lpa";
+    sha256 = "0fq9a1fn0c77wfpypl3z7y23gbkw295ksy97wi9lhb5zj2m3dkq0";
   };
 
   nativeBuildInputs = [ cmake ninja ];

From c970b4ef126f4133fb6e9877446c7bf852d42a6a Mon Sep 17 00:00:00 2001
From: xeji <36407913+xeji@users.noreply.github.com>
Date: Wed, 31 Oct 2018 18:59:46 +0100
Subject: [PATCH 0214/1129] eternal-terminal: fix homepage url

---
 pkgs/tools/networking/eternal-terminal/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/tools/networking/eternal-terminal/default.nix b/pkgs/tools/networking/eternal-terminal/default.nix
index 9d21e7a26736..73eaa07ac8ff 100644
--- a/pkgs/tools/networking/eternal-terminal/default.nix
+++ b/pkgs/tools/networking/eternal-terminal/default.nix
@@ -17,7 +17,7 @@ stdenv.mkDerivation rec {
   meta = with stdenv.lib; {
     description = "Remote shell that automatically reconnects without interrupting the session";
     license = licenses.asl20;
-    homepage = https://mistertea.github.io/EternalTCP/;
+    homepage = https://mistertea.github.io/EternalTerminal/;
     platforms = platforms.linux ++ platforms.darwin;
     maintainers = [ maintainers.dezgeg ];
   };

From 4133885dab59c9425077df8b6f680902d05b6370 Mon Sep 17 00:00:00 2001
From: Timo Kaufmann <timokau@zoho.com>
Date: Tue, 30 Oct 2018 18:08:36 +0100
Subject: [PATCH 0215/1129] pythonPackages.pyzmq: use zeromq4

---
 pkgs/development/python-modules/pyzmq/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pyzmq/default.nix b/pkgs/development/python-modules/pyzmq/default.nix
index 31b08d0a9e0b..71243ef6f76e 100644
--- a/pkgs/development/python-modules/pyzmq/default.nix
+++ b/pkgs/development/python-modules/pyzmq/default.nix
@@ -2,7 +2,7 @@
 , fetchPypi
 , pytest
 , tornado
-, zeromq3
+, zeromq
 , py
 , python
 }:
@@ -17,7 +17,7 @@ buildPythonPackage rec {
   };
 
   checkInputs = [  pytest tornado ];
-  buildInputs = [ zeromq3];
+  buildInputs = [ zeromq ];
   propagatedBuildInputs = [ py ];
 
   # test_socket.py seems to be hanging

From 0459a8c8db94069f89dd52c51d731ca9901f0b3b Mon Sep 17 00:00:00 2001
From: "Tristan Helmich (omniIT)" <tristan.helmich@omniit.de>
Date: Wed, 31 Oct 2018 19:28:55 +0100
Subject: [PATCH 0216/1129] sc-controller: 0.4.4 -> 0.4.5

---
 pkgs/misc/drivers/sc-controller/default.nix | 8 ++------
 1 file changed, 2 insertions(+), 6 deletions(-)

diff --git a/pkgs/misc/drivers/sc-controller/default.nix b/pkgs/misc/drivers/sc-controller/default.nix
index 9de0ba277789..b504002b7d9a 100644
--- a/pkgs/misc/drivers/sc-controller/default.nix
+++ b/pkgs/misc/drivers/sc-controller/default.nix
@@ -7,13 +7,13 @@
 
 buildPythonApplication rec {
   pname = "sc-controller";
-  version = "0.4.4";
+  version = "0.4.5";
 
   src = fetchFromGitHub {
     owner  = "kozec";
     repo   = pname;
     rev    = "v${version}";
-    sha256 = "0ki9x28i5slpnygkpdglcvj8cssvvjyz732y1cnpzw1f0sj0kris";
+    sha256 = "0mb9r4811rfj5rs4vrdhaf3x38iy1fvxr4sk2zg3xhvc29cdf5wv";
   };
 
   nativeBuildInputs = [ wrapGAppsHook ];
@@ -24,10 +24,6 @@ buildPythonApplication rec {
 
   checkInputs = [ pytest ];
 
-  patches = [ 
-    ./fix-udev.patch  # fix upstream issue #401, remove with the next update
-  ];
-
   postPatch = ''
     substituteInPlace scc/paths.py --replace sys.prefix "'$out'"
     substituteInPlace scc/uinput.py --replace /usr/include ${linuxHeaders}/include

From 9c794029620183b714e6eac63df6a9bc0e786178 Mon Sep 17 00:00:00 2001
From: Will Dietz <github@wdtz.org>
Date: Wed, 31 Oct 2018 13:32:44 -0500
Subject: [PATCH 0217/1129] hub: 2.5.1 -> 2.6.0, cleanup a bit (#49503)

* categorize inputs appropriately
* only put man pages into share/man; previously we copied other formats
  as well as intermediate files used in man page generation.
  (which 'man' complained about but otherwise seemed to ignore)
---
 .../version-management/git-and-tools/hub/default.nix     | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/version-management/git-and-tools/hub/default.nix b/pkgs/applications/version-management/git-and-tools/hub/default.nix
index 113d7f78b905..e01101c6a662 100644
--- a/pkgs/applications/version-management/git-and-tools/hub/default.nix
+++ b/pkgs/applications/version-management/git-and-tools/hub/default.nix
@@ -2,7 +2,7 @@
 
 buildGoPackage rec {
   name = "hub-${version}";
-  version = "2.5.1";
+  version = "2.6.0";
 
   goPackagePath = "github.com/github/hub";
 
@@ -10,10 +10,11 @@ buildGoPackage rec {
     owner = "github";
     repo = "hub";
     rev = "v${version}";
-    sha256 = "0a5i351v998vdwf883qhh39c15x56db01fr9hscz4ha7r9550pqg";
+    sha256 = "0hxmbpyv2yjxg4v3z50x5ikgcz7mgv5prya8jcpi277vq2s0wwa1";
   };
 
-  buildInputs = [ groff ronn ruby utillinux ] ++
+  nativeBuildInputs = [ groff ronn utillinux ];
+  buildInputs = [ ruby ] ++
     stdenv.lib.optional stdenv.isDarwin Security;
 
   postPatch = ''
@@ -29,7 +30,7 @@ buildGoPackage rec {
     install -D etc/hub.fish_completion  "$bin/share/fish/vendor_completions.d/hub.fish"
 
     make man-pages
-    cp -r share/man $bin/share/man
+    cp -vr --parents share/man/man[1-9]/*.[1-9] $bin/
   '';
 
   meta = with stdenv.lib; {

From e662e0b8d9eaedfbba4236f5bef5ec4a6c5005f3 Mon Sep 17 00:00:00 2001
From: Tristan Helmich <fadenb@users.noreply.github.com>
Date: Wed, 31 Oct 2018 19:53:47 +0100
Subject: [PATCH 0218/1129] saxon-he: 9.8.0.6 -> 9.9.0.1 (#49541)

---
 pkgs/development/libraries/java/saxon/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/libraries/java/saxon/default.nix b/pkgs/development/libraries/java/saxon/default.nix
index ca9aa8fc36e8..687e1e8a1deb 100644
--- a/pkgs/development/libraries/java/saxon/default.nix
+++ b/pkgs/development/libraries/java/saxon/default.nix
@@ -71,12 +71,12 @@ in {
 
   saxon-he = common {
     pname = "saxon-he";
-    version = "9.8.0.6";
+    version = "9.9.0.1";
     prog = "saxon-he";
     jar = "saxon9he";
     src = fetchurl {
-      url = mirror://sourceforge/saxon/Saxon-HE/9.8/SaxonHE9-8-0-6J.zip;
-      sha256 = "03r4djm298rxz8q7jph63h9niglrl3rifxskq1b3bclx5rgxi2lk";
+      url = mirror://sourceforge/saxon/Saxon-HE/9.9/SaxonHE9-9-0-1J.zip;
+      sha256 = "1inxd7ia7rl9fxfrw8dy9sb7rqv76ipblaki5262688wf2dscs60";
     };
     description = "Processor for XSLT 3.0, XPath 2.0 and 3.1, and XQuery 3.1";
   };

From 363f28f1dec6c7e363512456a03919f7792f2f05 Mon Sep 17 00:00:00 2001
From: leenaars <leenaars@users.noreply.github.com>
Date: Wed, 31 Oct 2018 20:08:18 +0100
Subject: [PATCH 0219/1129] tribler: 7.0.2 -> 7.1.2 (#49386)

---
 pkgs/applications/networking/p2p/tribler/default.nix | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/networking/p2p/tribler/default.nix b/pkgs/applications/networking/p2p/tribler/default.nix
index 77ca7afe871e..29ec8158099c 100644
--- a/pkgs/applications/networking/p2p/tribler/default.nix
+++ b/pkgs/applications/networking/p2p/tribler/default.nix
@@ -3,11 +3,11 @@
 
 stdenv.mkDerivation rec {
   name = "tribler-${version}";
-  version = "7.0.2";
+  version = "7.1.2";
 
   src = fetchurl {
-    url = "https://github.com/Tribler/tribler/releases/download/v${version}/Tribler-v${version}.tar.xz";
-    sha256 = "1p0d0l0sa0nrnbyx2gg50nklkljwvl581i9w3z5qbkfzc7jsdy42";
+    url = "https://github.com/Tribler/tribler/releases/download/v${version}/Tribler-v${version}.tar.gz";
+    sha256 = "1ayzqx4358qlx56hsnsn5s8xl6mzdb6nw4kwsalmp86dw6vmmis8";
   };
 
   buildInputs = [
@@ -41,6 +41,8 @@ stdenv.mkDerivation rec {
     pythonPackages.psutil
     pythonPackages.meliae
     pythonPackages.sip
+    pythonPackages.pillow
+    pythonPackages.networkx
   ];
 
   postPatch = ''

From 7c0122e7e6758af7e5fd972c6047e3cbac9bfa7d Mon Sep 17 00:00:00 2001
From: Patrick Elliott <patrick.d.elliott@gmail.com>
Date: Wed, 31 Oct 2018 20:12:53 +0100
Subject: [PATCH 0220/1129] Added native build dependencies for scuttlebot
 (#49471)

---
 pkgs/development/node-packages/default-v8.nix | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/pkgs/development/node-packages/default-v8.nix b/pkgs/development/node-packages/default-v8.nix
index be9aafe47415..f7d3e3c908f8 100644
--- a/pkgs/development/node-packages/default-v8.nix
+++ b/pkgs/development/node-packages/default-v8.nix
@@ -86,6 +86,10 @@ nodePackages // {
     '';
   };
 
+  scuttlebot = nodePackages.scuttlebot.override {
+    buildInputs = [ pkgs.automake pkgs.autoconf nodePackages.node-gyp-build ];
+  };
+
   statsd = nodePackages.statsd.override {
     # broken with node v8, dead upstream,
     # see #45946 and https://github.com/etsy/statsd/issues/646

From 67c1815d0ab5b55c807683e236cab3fb1f07e91f Mon Sep 17 00:00:00 2001
From: Arnaud <root@arnaud.sh>
Date: Wed, 31 Oct 2018 20:24:58 +0100
Subject: [PATCH 0221/1129] protonmail-bridge: 1.0.6-1 -> 1.1.0-1 (#49517)

---
 .../applications/networking/protonmail-bridge/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/networking/protonmail-bridge/default.nix b/pkgs/applications/networking/protonmail-bridge/default.nix
index a4a127db73bf..3e74fbfb66af 100644
--- a/pkgs/applications/networking/protonmail-bridge/default.nix
+++ b/pkgs/applications/networking/protonmail-bridge/default.nix
@@ -2,7 +2,7 @@
   libsecret, libGL, libpulseaudio, glib, makeWrapper, makeDesktopItem }:
 
 let
-  version = "1.0.6-1";
+  version = "1.1.0-1";
 
   description = ''
     An application that runs on your computer in the background and seamlessly encrypts
@@ -25,7 +25,7 @@ in stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "https://protonmail.com/download/protonmail-bridge_${version}_amd64.deb";
-    sha256 = "1as4xdsik2w9clbrwp1k00491324cg6araz3jq2m013yg1cild28";
+    sha256 = "0l29z208krnd3dginc203m4p5dlmnxf08vpmbm9xzlckwmswizkb";
   };
 
   nativeBuildInputs = [ makeWrapper ];
@@ -38,10 +38,10 @@ in stdenv.mkDerivation rec {
 
   installPhase = ''
     mkdir -p $out/{bin,lib,share/applications}
-    # mkdir -p $out/share/{applications,icons/hicolor/scalable/apps}
+    mkdir -p $out/share/{applications,icons/hicolor/scalable/apps}
 
     cp -r usr/lib/protonmail/bridge/Desktop-Bridge{,.sh} $out/lib
-    # cp usr/share/icons/protonmail/Desktop-Bridge.svg $out/share/icons/hicolor/scalable/apps/desktop-bridge.svg
+    cp usr/share/icons/protonmail/Desktop-Bridge.svg $out/share/icons/hicolor/scalable/apps/desktop-bridge.svg
     cp ${desktopItem}/share/applications/* $out/share/applications
 
     ln -s $out/lib/Desktop-Bridge $out/bin/Desktop-Bridge

From f475aee5986dd6b76c171bf9f93540e547d52d13 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Wed, 31 Oct 2018 12:30:38 -0700
Subject: [PATCH 0222/1129] closurecompiler: 20180805 -> 20180910 (#48529)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/closure-compiler/versions
---
 pkgs/development/compilers/closure/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/compilers/closure/default.nix b/pkgs/development/compilers/closure/default.nix
index 63b31c60d986..d26f731c21f9 100644
--- a/pkgs/development/compilers/closure/default.nix
+++ b/pkgs/development/compilers/closure/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "closure-compiler-${version}";
-  version = "20180805";
+  version = "20180910";
 
   src = fetchurl {
     url = "https://dl.google.com/closure-compiler/compiler-${version}.tar.gz";
-    sha256 = "1jis9ykbbynq6pa8sl1jy8888l2bk9g4xsiiiab51zn62shqnq26";
+    sha256 = "12k4cp9f8g03k3zf2g70pn6ybx8gk0hfh81ypiyb5hkfij95bi9k";
   };
 
   sourceRoot = ".";

From 5ace2703096f16fa924072f3743d6eaac35bec32 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Wed, 31 Oct 2018 14:32:30 -0500
Subject: [PATCH 0223/1129] c-ares: 1.14.0 -> 1.15.0

https://c-ares.haxx.se/changelog.html#1_15_0
---
 pkgs/development/libraries/c-ares/default.nix | 15 +++------------
 1 file changed, 3 insertions(+), 12 deletions(-)

diff --git a/pkgs/development/libraries/c-ares/default.nix b/pkgs/development/libraries/c-ares/default.nix
index 099d02c82639..efe7a5820b53 100644
--- a/pkgs/development/libraries/c-ares/default.nix
+++ b/pkgs/development/libraries/c-ares/default.nix
@@ -2,23 +2,14 @@
 
 let self =
 stdenv.mkDerivation rec {
-  name = "c-ares-1.14.0";
+  name = "c-ares-1.15.0";
 
   src = fetchurl {
     url = "https://c-ares.haxx.se/download/${name}.tar.gz";
-    sha256 = "0vnwmbvymw677k780kpb6sb8i3szdp89rzy8mz1fwg1657yw3ls5";
+    sha256 = "0lk8knip4xk6qzksdkn7085mmgm4ixfczdyyjw656c193y3rgnvc";
   };
 
-  configureFlags = if stdenv.hostPlatform.isWindows then [ "--disable-shared" "--enable-static" ] else null;
-
-  # ares_android.h header is missing
-  # see issue https://github.com/c-ares/c-ares/issues/216
-  postPatch = if stdenv.hostPlatform.isAndroid then ''
-    cp ${fetchurl {
-      url = "https://raw.githubusercontent.com/c-ares/c-ares/cares-1_14_0/ares_android.h";
-      sha256 = "1aw8y6r5c8zq6grjwf4mcm2jj35r5kgdklrp296214s1f1827ps8";
-    }} ares_android.h
-  '' else null;
+  configureFlags = stdenv.lib.optionals stdenv.hostPlatform.isWindows [ "--disable-shared" "--enable-static" ];
 
   meta = with stdenv.lib; {
     description = "A C library for asynchronous DNS requests";

From e4c64ae93029a7c3a09a346df94362488a1eae35 Mon Sep 17 00:00:00 2001
From: Christian S <grische@users.noreply.github.com>
Date: Wed, 31 Oct 2018 20:47:24 +0100
Subject: [PATCH 0224/1129] openh264: 1.7.0 -> 1.8.0 (#49544)

encoder fixes, clang compilation error for ARM
---
 pkgs/development/libraries/openh264/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/openh264/default.nix b/pkgs/development/libraries/openh264/default.nix
index 0a0b4c8d5498..c8208ce27bae 100644
--- a/pkgs/development/libraries/openh264/default.nix
+++ b/pkgs/development/libraries/openh264/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "openh264-${version}";
-  version = "1.7.0";
+  version = "1.8.0";
 
   src = fetchFromGitHub {
     owner = "cisco";
     repo = "openh264";
     rev = "v${version}";
-    sha256 = "0ywrqni05bh925ws5fmd24bm6h9n6z2wp1q19v545v06biiwr46a";
+    sha256 = "1pl7hpk25nh7lcx1lbbv984gvnim0d6hxf4qfmrjjfjf6w37sjw4";
   };
 
   buildInputs = [ nasm ];

From dc00987d959d78b1facecbe1c4ba43b7191c18fb Mon Sep 17 00:00:00 2001
From: Michael Weiss <dev.primeos@gmail.com>
Date: Wed, 31 Oct 2018 20:52:49 +0100
Subject: [PATCH 0225/1129] androidStudioPackages.beta: 3.3.0.13 -> 3.3.0.14

---
 pkgs/applications/editors/android-studio/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/editors/android-studio/default.nix b/pkgs/applications/editors/android-studio/default.nix
index bf9c7b7e129b..e97e22e4a9ef 100644
--- a/pkgs/applications/editors/android-studio/default.nix
+++ b/pkgs/applications/editors/android-studio/default.nix
@@ -13,9 +13,9 @@ let
     sha256Hash = "117skqjax1xz9plarhdnrw2rwprjpybdc7mx7wggxapyy920vv5r";
   };
   betaVersion = {
-    version = "3.3.0.13"; # "Android Studio 3.3 Beta 1"
-    build = "182.5073496";
-    sha256Hash = "0bg1h0msd6mpkvirkg4pssa1ak32smv2rlxxsjdm3p29p8gg59px";
+    version = "3.3.0.14"; # "Android Studio 3.3 Beta 2"
+    build = "182.5078385";
+    sha256Hash = "10jw508fzxbknfl1l058ksnnli2nav91wmh2x2p0mz96lkf5bvhn";
   };
   latestVersion = { # canary & dev
     version = "3.4.0.1"; # "Android Studio 3.4 Canary 2"

From 40ae90c9e41f7f910b55e6e389e19e60daca6fb8 Mon Sep 17 00:00:00 2001
From: Tristan Helmich <fadenb@users.noreply.github.com>
Date: Wed, 31 Oct 2018 21:04:31 +0100
Subject: [PATCH 0226/1129] dotnetPackages.SharpFont: 3.1.0 -> 4.0.1 (#49545)

---
 pkgs/top-level/dotnet-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/dotnet-packages.nix b/pkgs/top-level/dotnet-packages.nix
index ee1b94c8638d..bcfef9bdad88 100644
--- a/pkgs/top-level/dotnet-packages.nix
+++ b/pkgs/top-level/dotnet-packages.nix
@@ -210,8 +210,8 @@ let self = dotnetPackages // overrides; dotnetPackages = with self; {
 
   SharpFont = fetchNuGet {
     baseName = "SharpFont";
-    version = "3.1.0";
-    sha256 = "137y514i4zi0i0qsx7nv4ibl4kifbr8xr23rqdkwf7yxf88jjmh2";
+    version = "4.0.1";
+    sha256 = "1yd3cm4ww0hw2k3aymf792hp6skyg8qn491m2a3fhkzvsl8z7vs8";
     outputFiles = [ "lib/*" "config/*" ];
   };
 

From e07574876980e36c662c4cd8b2a1297893ca9011 Mon Sep 17 00:00:00 2001
From: Michael Weiss <dev.primeos@gmail.com>
Date: Wed, 31 Oct 2018 22:00:18 +0100
Subject: [PATCH 0227/1129] signal-desktop: 1.17.2 -> 1.17.3

---
 .../networking/instant-messengers/signal-desktop/default.nix  | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix b/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix
index 3c2109f14c5d..ca6ee04d370b 100644
--- a/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix
+++ b/pkgs/applications/networking/instant-messengers/signal-desktop/default.nix
@@ -56,11 +56,11 @@ let
 
 in stdenv.mkDerivation rec {
   name = "signal-desktop-${version}";
-  version = "1.17.2";
+  version = "1.17.3";
 
   src = fetchurl {
     url = "https://updates.signal.org/desktop/apt/pool/main/s/signal-desktop/signal-desktop_${version}_amd64.deb";
-    sha256 = "1ibci07w4dh7r0dkwb3nbqm470rgak2a98rlqf8390rxrinfli3p";
+    sha256 = "1k0gj24562jfj748s7qcn1f7brr1c0zn2dppxvfv2ka2r2n0z1h4";
   };
 
   phases = [ "unpackPhase" "installPhase" ];

From bb2bae69868cf131d50e4e1012a74759a40f4c90 Mon Sep 17 00:00:00 2001
From: royneary <christian@ulrich.earth>
Date: Wed, 31 Oct 2018 22:03:27 +0100
Subject: [PATCH 0228/1129] mosdeph: fix compilation with nim 0.19

---
 pkgs/applications/science/biology/mosdepth/default.nix | 9 ++++++---
 1 file changed, 6 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/science/biology/mosdepth/default.nix b/pkgs/applications/science/biology/mosdepth/default.nix
index 4b4920a6ca3a..3cd83a5cdd27 100644
--- a/pkgs/applications/science/biology/mosdepth/default.nix
+++ b/pkgs/applications/science/biology/mosdepth/default.nix
@@ -4,8 +4,8 @@ let
   hts-nim = fetchFromGitHub {
     owner = "brentp";
     repo = "hts-nim";
-    rev = "9cd83e30522ab64cd71eb8209be4154aa5579ce1";
-    sha256 = "10g408idy14667varq1syf06rrbpk63i3ib7i5dh1md4ib19av6f";
+    rev = "v0.2.5";
+    sha256 = "1fma99rjqxgg9dihkd10hm1jjp5amsk5wsxnvq1lk4mcsjix5xqb";
   };
 
   docopt = fetchFromGitHub {
@@ -28,7 +28,10 @@ in stdenv.mkDerivation rec {
 
   buildInputs = [ nim ];
 
-  buildPhase = "nim -p:${hts-nim}/src -p:${docopt}/src c -d:release mosdepth.nim";
+  buildPhase = ''
+    HOME=$TMPDIR
+    nim -p:${hts-nim}/src -p:${docopt}/src c --nilseqs:on -d:release mosdepth.nim
+  '';
   installPhase = "install -Dt $out/bin mosdepth";
   fixupPhase = "patchelf --set-rpath ${stdenv.lib.makeLibraryPath [ stdenv.cc.cc htslib pcre ]} $out/bin/mosdepth";
 

From 18aa80f352914101827a98cab82460c89525c526 Mon Sep 17 00:00:00 2001
From: royneary <christian@ulrich.earth>
Date: Wed, 31 Oct 2018 22:04:00 +0100
Subject: [PATCH 0229/1129] nrpl: fix compilation with nim 0.19

---
 pkgs/development/tools/nrpl/default.nix | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/tools/nrpl/default.nix b/pkgs/development/tools/nrpl/default.nix
index d6a357235902..234f5a5bfae7 100644
--- a/pkgs/development/tools/nrpl/default.nix
+++ b/pkgs/development/tools/nrpl/default.nix
@@ -25,7 +25,10 @@ stdenv.mkDerivation rec {
     "-lpcre"
   ];
 
-  buildPhase = "nim c -d:release nrpl.nim";
+  buildPhase = ''
+    HOME=$TMPDIR
+    nim c -d:release nrpl.nim
+  '';
 
   installPhase = "install -Dt $out/bin nrpl";
 

From a2d39a802d8ced741471d63a5ec08edb8605fb10 Mon Sep 17 00:00:00 2001
From: qolii <36613499+qolii@users.noreply.github.com>
Date: Wed, 31 Oct 2018 21:05:03 +0000
Subject: [PATCH 0230/1129] linux-hardkernel: 4.14.73-149 -> 4.14.78-150
 (#49535)

---
 pkgs/os-specific/linux/kernel/linux-hardkernel-4.14.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/os-specific/linux/kernel/linux-hardkernel-4.14.nix b/pkgs/os-specific/linux/kernel/linux-hardkernel-4.14.nix
index fc9cb2f238b2..8ad96f4f1bfb 100644
--- a/pkgs/os-specific/linux/kernel/linux-hardkernel-4.14.nix
+++ b/pkgs/os-specific/linux/kernel/linux-hardkernel-4.14.nix
@@ -1,10 +1,10 @@
 { stdenv, buildPackages, fetchFromGitHub, perl, buildLinux, libelf, utillinux, ... } @ args:
 
 buildLinux (args // rec {
-  version = "4.14.73-149";
+  version = "4.14.78-150";
 
   # modDirVersion needs to be x.y.z.
-  modDirVersion = "4.14.73";
+  modDirVersion = "4.14.78";
 
   # branchVersion needs to be x.y.
   extraMeta.branch = "4.14";
@@ -13,7 +13,7 @@ buildLinux (args // rec {
     owner = "hardkernel";
     repo = "linux";
     rev = version;
-    sha256 = "1zc5py6v3xyvy6dwghnqb7nsn9l1aib3d96i5bqy9dd56vyiy5m2";
+    sha256 = "0139qciaf1vlz41s9idjbcx20c1svrp1l7qaazfkwfx52ghb4pvv";
   };
 
   defconfig = "odroidxu4_defconfig";

From 8f4c5700309ca0bbcad792bfd5e2b8d31f09df97 Mon Sep 17 00:00:00 2001
From: Tomas Hlavaty <tom@logand.com>
Date: Wed, 31 Oct 2018 22:33:28 +0100
Subject: [PATCH 0231/1129] sbcl: include info manual

---
 pkgs/development/compilers/sbcl/default.nix | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/pkgs/development/compilers/sbcl/default.nix b/pkgs/development/compilers/sbcl/default.nix
index 334ecbb168ba..381e7b1d84ef 100644
--- a/pkgs/development/compilers/sbcl/default.nix
+++ b/pkgs/development/compilers/sbcl/default.nix
@@ -5,6 +5,7 @@
   # Note that the created binaries still need `patchelf --set-interpreter ...`
   # to get rid of ${glibc} dependency.
 , purgeNixReferences ? false
+, texinfo
 }:
 
 stdenv.mkDerivation rec {
@@ -16,6 +17,8 @@ stdenv.mkDerivation rec {
     sha256 = "0maa4h5zdykq050hdqk5wd74dhl6k7br3qrhfd4f2387skk8ky7a";
   };
 
+  buildInputs = [texinfo];
+
   patchPhase = ''
     echo '"${version}.nixos"' > version.lisp-expr
     echo "
@@ -83,6 +86,7 @@ stdenv.mkDerivation rec {
 
   buildPhase = ''
     sh make.sh --prefix=$out --xc-host="${sbclBootstrapHost}"
+    (cd doc/manual ; make info)
   '';
 
   installPhase = ''

From dc50b2b558763f5d7846e481f19e3b78b447309e Mon Sep 17 00:00:00 2001
From: Tomas Hlavaty <tom@logand.com>
Date: Wed, 31 Oct 2018 23:32:47 +0100
Subject: [PATCH 0232/1129] sbcl: 1.4.12 -> 1.4.13

---
 pkgs/development/compilers/sbcl/default.nix | 9 ++-------
 1 file changed, 2 insertions(+), 7 deletions(-)

diff --git a/pkgs/development/compilers/sbcl/default.nix b/pkgs/development/compilers/sbcl/default.nix
index 381e7b1d84ef..1ef6dd065705 100644
--- a/pkgs/development/compilers/sbcl/default.nix
+++ b/pkgs/development/compilers/sbcl/default.nix
@@ -10,11 +10,11 @@
 
 stdenv.mkDerivation rec {
   name    = "sbcl-${version}";
-  version = "1.4.12";
+  version = "1.4.13";
 
   src = fetchurl {
     url    = "mirror://sourceforge/project/sbcl/sbcl/${version}/${name}-source.tar.bz2";
-    sha256 = "0maa4h5zdykq050hdqk5wd74dhl6k7br3qrhfd4f2387skk8ky7a";
+    sha256 = "120rnnz8367lk7ljqlf8xidm4b0d738xqsib4kq0q5ms5r7fzgvm";
   };
 
   buildInputs = [texinfo];
@@ -49,11 +49,6 @@ stdenv.mkDerivation rec {
       '/date defaulted-source/i(or (and (= 2208988801 (file-write-date defaulted-source-truename)) (= 2208988801 (file-write-date defaulted-fasl-truename)))'
 
     # Fix the tests
-    sed -e '/deftest pwent/inil' -i contrib/sb-posix/posix-tests.lisp
-    sed -e '/deftest grent/inil' -i contrib/sb-posix/posix-tests.lisp
-    sed -e '/deftest .*ent.non-existing/,+5d' -i contrib/sb-posix/posix-tests.lisp
-    sed -e '/deftest \(pw\|gr\)ent/,+3d' -i contrib/sb-posix/posix-tests.lisp
-
     sed -e '5,$d' -i contrib/sb-bsd-sockets/tests.lisp
     sed -e '5,$d' -i contrib/sb-simple-streams/*test*.lisp
 

From 622eb09d31fd97ae891e45cdc09885fa5def6618 Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Sat, 27 Oct 2018 17:25:55 -0400
Subject: [PATCH 0233/1129] quilter: 1.6.3 -> 1.6.8

---
 pkgs/applications/editors/quilter/default.nix | 39 +++++--------------
 1 file changed, 9 insertions(+), 30 deletions(-)

diff --git a/pkgs/applications/editors/quilter/default.nix b/pkgs/applications/editors/quilter/default.nix
index 4d4cb0239bf3..87ffd3256a88 100644
--- a/pkgs/applications/editors/quilter/default.nix
+++ b/pkgs/applications/editors/quilter/default.nix
@@ -1,10 +1,10 @@
-{ stdenv, fetchFromGitHub, fetchpatch, vala, pkgconfig, meson, ninja, python3
+{ stdenv, fetchFromGitHub, fetchpatch, vala_0_40, pkgconfig, meson, ninja, python3
 , granite, gtk3, desktop-file-utils, gnome3, gtksourceview, webkitgtk, gtkspell3
 , discount, gobjectIntrospection, wrapGAppsHook }:
 
 stdenv.mkDerivation rec {
   pname = "quilter";
-  version = "1.6.3";
+  version = "1.6.8";
 
   name = "${pname}-${version}";
 
@@ -12,7 +12,7 @@ stdenv.mkDerivation rec {
     owner = "lainsce";
     repo = pname;
     rev = version;
-    sha256 = "1wa0i6dgg6fgb7q9z33v9qmn1a1dn3ik58v1f3a49dvd5xyf8q6q";
+    sha256 = "07i9pivpddgixn1wzbr15gvzf0n5pklx0gkjjaa35kvj2z8k31x5";
   };
 
   nativeBuildInputs = [
@@ -22,40 +22,19 @@ stdenv.mkDerivation rec {
     ninja
     pkgconfig
     python3
-    vala
+    vala_0_40 # should be `elementary.vala` when elementary attribute set is merged
     wrapGAppsHook
   ];
 
   buildInputs = [
     discount
+    gnome3.defaultIconTheme # should be `elementary.defaultIconTheme`when elementary attribute set is merged
+    gnome3.libgee
     granite
     gtk3
     gtksourceview
     gtkspell3
     webkitgtk
-    gnome3.libgee
-  ];
-
-  patches = [
-    # Fix build with vala 0.42 - Drop these in next release
-    (fetchpatch {
-      url = "https://github.com/lainsce/quilter/commit/a58838213cd7f2d33048c7b34b96dc8875612624.patch";
-      sha256 = "1a4w1zql4zfk8scgrrssrm9n3sh5fsc1af5zvrqk8skbv7f2c80n";
-    })
-    (fetchpatch {
-      url = "https://github.com/lainsce/quilter/commit/d1800ce830343a1715bc83da3339816554896be5.patch";
-      sha256 = "0xl5iz8bgx5661vbbq8qa1wkfvw9d3da67x564ckjfi05zq1vddz";
-    })
-    # Correct libMarkdown dependency discovery: See https://github.com/lainsce/quilter/pull/170
-    (fetchpatch {
-      url = "https://github.com/lainsce/quilter/commit/8b1f3a60bd14cb86c1c62f9917c5f0c12bc4e459.patch";
-      sha256 = "1kjc6ygf9yjvqfa4xhzxiava3338swp9wbjhpfaa3pyz3ayh188n";
-    })
-    # post_install script cleanups: See https://github.com/lainsce/quilter/pull/171
-    (fetchpatch {
-      url = "https://github.com/lainsce/quilter/commit/55bf3b10cd94fcc40b0867bbdb1931a09f577922.patch";
-      sha256 = "1330amichaif2qfrh4qkxwqbcpr87ipik7vzjbjdm2bv3jz9353r";
-    })
   ];
 
   postPatch = ''
@@ -65,9 +44,9 @@ stdenv.mkDerivation rec {
 
   meta = with stdenv.lib; {
     description = "Focus on your writing - designed for elementary OS";
-    homepage    = https://github.com/lainsce/quilter;
-    license     = licenses.gpl2Plus;
+    homepage = https://github.com/lainsce/quilter;
+    license = licenses.gpl2Plus;
     maintainers = with maintainers; [ worldofpeace ];
-    platforms   = platforms.linux;
+    platforms = platforms.linux;
   };
 }

From 398282c1965bf45e192128ec06a244bbe36d7f78 Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Wed, 31 Oct 2018 17:52:35 -0400
Subject: [PATCH 0234/1129] bookworm: 1.0.0 -> 2018-10-21

---
 pkgs/applications/office/bookworm/default.nix | 40 +++++++++++++++----
 1 file changed, 32 insertions(+), 8 deletions(-)

diff --git a/pkgs/applications/office/bookworm/default.nix b/pkgs/applications/office/bookworm/default.nix
index 45c794c82ea5..bc2f260c7030 100644
--- a/pkgs/applications/office/bookworm/default.nix
+++ b/pkgs/applications/office/bookworm/default.nix
@@ -1,46 +1,70 @@
-{ stdenv, fetchFromGitHub, vala, pkgconfig, libxml2, cmake, ninja, gtk3, granite, gnome3
-, gobjectIntrospection, sqlite, poppler, poppler_utils, html2text, unzip, unar, wrapGAppsHook }:
+{ stdenv, fetchFromGitHub, fetchpatch, vala_0_40, python3, python2, pkgconfig, libxml2, meson, ninja, gtk3, granite, gnome3
+, gobjectIntrospection, sqlite, poppler, poppler_utils, html2text, curl, gnugrep, coreutils, bash, unzip, unar, wrapGAppsHook }:
 
 stdenv.mkDerivation rec {
   pname = "bookworm";
-  version = "1.0.0";
+  version = "4f7b118281667d22f1b3205edf0b775341fa49cb";
 
-  name = "${pname}-${version}";
+  name = "${pname}-2018-10-21";
 
   src = fetchFromGitHub {
     owner = "babluboy";
     repo = pname;
     rev = version;
-    sha256 = "0nv1nxird0s0qfhh8fr82mkj4qimhklw1bwcjwmvjdsvsxxs9520";
+    sha256 = "0bcyim87zk4b4xmgfs158lnds3y8jg7ppzw54kjpc9rh66fpn3b9";
   };
 
+  # See: https://github.com/babluboy/bookworm/pull/220
+  patches = [
+    (fetchpatch {
+      url = "https://github.com/worldofpeace/bookworm/commit/b2faf685c46b95d6a2d4ec3725e4e4122b61e99a.patch";
+      sha256 = "14az86cj5j65hngfflrp1rmnrkdrhg2a8pl7www3jgfwasxay975";
+    })
+  ];
+
   nativeBuildInputs = [
-    cmake
+    bash
     gobjectIntrospection
     libxml2
+    meson
     ninja
     pkgconfig
-    vala
+    python3
+    vala_0_40 # should be `elementary.vala` when elementary attribute set is merged
     wrapGAppsHook
   ];
 
   buildInputs = with gnome3; [
     glib
+    gnome3.defaultIconTheme # should be `elementary.defaultIconTheme`when elementary attribute set is merged
     granite
     gtk3
     html2text
     libgee
     poppler
+    python2
     sqlite
     webkitgtk
   ];
 
+  postPatch = ''
+    chmod +x meson/post_install.py
+    patchShebangs meson/post_install.py
+  '';
+
+  # These programs are expected in PATH from the source code and scripts
   preFixup = ''
     gappsWrapperArgs+=(
-      --prefix PATH : "${stdenv.lib.makeBinPath [ unzip unar poppler_utils html2text ]}"
+      --prefix PATH : "${stdenv.lib.makeBinPath [ unzip unar poppler_utils html2text coreutils curl gnugrep ]}"
+      --prefix PATH : $out/bin
     )
   '';
 
+  postFixup = ''
+    patchShebangs $out/share/bookworm/scripts/mobi_lib/*.py
+    patchShebangs $out/share/bookworm/scripts/tasks/*.sh
+  '';
+
    meta = with stdenv.lib; {
      description = "A simple, focused eBook reader";
      longDescription = ''

From a9288f1d95b660d12f33fc51aac1ad7d29fb9915 Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Wed, 31 Oct 2018 17:58:23 -0400
Subject: [PATCH 0235/1129] notejot: 1.4.5 -> 1.4.7

---
 pkgs/applications/misc/notejot/default.nix | 13 +++++++------
 1 file changed, 7 insertions(+), 6 deletions(-)

diff --git a/pkgs/applications/misc/notejot/default.nix b/pkgs/applications/misc/notejot/default.nix
index 59ba45e6f376..09c49135ca1c 100644
--- a/pkgs/applications/misc/notejot/default.nix
+++ b/pkgs/applications/misc/notejot/default.nix
@@ -1,9 +1,9 @@
-{ stdenv, fetchFromGitHub, vala, pkgconfig, meson, ninja, python3, granite
+{ stdenv, fetchFromGitHub, vala_0_40, pkgconfig, meson, ninja, python3, granite
 , gtk3, gnome3, gtksourceview, json-glib, gobjectIntrospection, wrapGAppsHook }:
 
 stdenv.mkDerivation rec {
   pname = "notejot";
-  version = "1.4.5";
+  version = "1.4.7";
 
   name = "${pname}-${version}";
 
@@ -20,11 +20,12 @@ stdenv.mkDerivation rec {
     ninja
     pkgconfig
     python3
-    vala
+    vala_0_40 # should be `elementary.vala` when elementary attribute set is merged
     wrapGAppsHook
   ];
 
   buildInputs = [
+    gnome3.defaultIconTheme # should be `elementary.defaultIconTheme`when elementary attribute set is merged
     gnome3.libgee
     granite
     gtk3
@@ -39,9 +40,9 @@ stdenv.mkDerivation rec {
 
   meta = with stdenv.lib; {
     description = "Stupidly-simple sticky notes applet";
-    homepage    = https://github.com/lainsce/notejot;
-    license     = licenses.gpl2Plus;
+    homepage = https://github.com/lainsce/notejot;
+    license = licenses.gpl2Plus;
     maintainers = with maintainers; [ worldofpeace ];
-    platforms   = platforms.linux;
+    platforms = platforms.linux;
   };
 }

From 8bf705658adbca74a7dbcc804ef5249cc14574ee Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Wed, 31 Oct 2018 18:04:02 -0400
Subject: [PATCH 0236/1129] hashit: 0.2.0 -> 1.0.0

---
 pkgs/tools/misc/hashit/default.nix | 23 +++++++++++++++--------
 1 file changed, 15 insertions(+), 8 deletions(-)

diff --git a/pkgs/tools/misc/hashit/default.nix b/pkgs/tools/misc/hashit/default.nix
index 69d73aafff92..46e460db354f 100644
--- a/pkgs/tools/misc/hashit/default.nix
+++ b/pkgs/tools/misc/hashit/default.nix
@@ -1,8 +1,8 @@
-{ stdenv, fetchFromGitHub, meson, ninja, pkgconfig, cmake, vala, python3, gnome3, gtk3, granite, gobjectIntrospection, wrapGAppsHook }:
+{ stdenv, fetchFromGitHub, meson, ninja, pkgconfig, cmake, vala_0_40, python3, gnome3, gtk3, granite, gobjectIntrospection, desktop-file-utils, wrapGAppsHook }:
 
 stdenv.mkDerivation rec {
   pname = "hashit";
-  version = "0.2.0";
+  version = "1.0.0";
 
   name = "${pname}-${version}";
 
@@ -10,30 +10,37 @@ stdenv.mkDerivation rec {
     owner = "artemanufrij";
     repo = pname;
     rev = version;
-    sha256 = "1d2g7cm7hhs354waidak9xkhhcvqlwnsl9d0bar9p82gfnpjdg7v";
+    sha256 = "1ba38qmwdk7vkarsxqn89irbymzx52gbks4isx0klg880xm2z4dv";
   };
 
   nativeBuildInputs = [
+    desktop-file-utils
     gobjectIntrospection
     meson
     ninja
     pkgconfig
     python3
-    vala
+    vala_0_40 # should be `elementary.vala` when elementary attribute set is merged
     wrapGAppsHook
   ];
 
   buildInputs = [
+    gnome3.defaultIconTheme # should be `elementary.defaultIconTheme`when elementary attribute set is merged
+    gnome3.libgee
     granite
     gtk3
-    gnome3.libgee
   ];
 
+  postPatch = ''
+    chmod +x meson/post_install.py
+    patchShebangs meson/post_install.py
+  '';
+
   meta = with stdenv.lib; {
     description = "A simple app for checking usual checksums";
-    homepage    = https://github.com/artemanufrij/hashit;
-    license     = licenses.gpl2Plus;
+    homepage = https://github.com/artemanufrij/hashit;
+    license = licenses.gpl2Plus;
     maintainers = with maintainers; [ worldofpeace ];
-    platforms   = platforms.linux;
+    platforms = platforms.linux;
   };
 }

From c1e3f1c45852720741e8ea621dda7095b238d1b0 Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Wed, 31 Oct 2018 18:06:13 -0400
Subject: [PATCH 0237/1129] aesop: 1.0.5 -> 1.0.7

---
 pkgs/applications/office/aesop/default.nix | 21 +++++++--------------
 1 file changed, 7 insertions(+), 14 deletions(-)

diff --git a/pkgs/applications/office/aesop/default.nix b/pkgs/applications/office/aesop/default.nix
index 64e2c0b94679..b510fe950a3d 100644
--- a/pkgs/applications/office/aesop/default.nix
+++ b/pkgs/applications/office/aesop/default.nix
@@ -1,9 +1,9 @@
-{ stdenv, fetchFromGitHub, fetchpatch, vala, pkgconfig, meson, ninja, python3, granite, gtk3
+{ stdenv, fetchFromGitHub, fetchpatch, vala_0_40, pkgconfig, meson, ninja, python3, granite, gtk3
 , gnome3, desktop-file-utils, json-glib, libsoup, poppler, gobjectIntrospection, wrapGAppsHook }:
 
 stdenv.mkDerivation rec {
   pname = "aesop";
-  version = "1.0.5";
+  version = "1.0.7";
 
   name = "${pname}-${version}";
 
@@ -21,11 +21,12 @@ stdenv.mkDerivation rec {
     ninja
     pkgconfig
     python3
-    vala
+    vala_0_40 # should be `elementary.vala` when elementary attribute set is merged
     wrapGAppsHook
   ];
 
   buildInputs = [
+    gnome3.defaultIconTheme # should be `elementary.defaultIconTheme`when elementary attribute set is merged
     gnome3.libgee
     granite
     gtk3
@@ -34,14 +35,6 @@ stdenv.mkDerivation rec {
     poppler
   ];
 
-  # Fix build with vala 0.42
-  patches = [
-    (fetchpatch {
-      url = "https://github.com/lainsce/aesop/commit/a90b3c711bd162583533370deb031c2c6254c82d.patch";
-      sha256 = "1zf831g6sqq3966q0i00x3jhlbfh9blcky6pnyp5qp59hxyxy169";
-    })
-  ];
-
   postPatch = ''
     chmod +x meson/post_install.py
     patchShebangs meson/post_install.py
@@ -49,9 +42,9 @@ stdenv.mkDerivation rec {
 
   meta = with stdenv.lib; {
     description = "The simplest PDF viewer around";
-    homepage    = https://github.com/lainsce/aesop;
-    license     = licenses.gpl2Plus;
+    homepage = https://github.com/lainsce/aesop;
+    license = licenses.gpl2Plus;
     maintainers = with maintainers; [ worldofpeace ];
-    platforms   = platforms.linux;
+    platforms = platforms.linux;
   };
 }

From 6759b7900eac5782f511a8161bd680ffd263b996 Mon Sep 17 00:00:00 2001
From: David Costa <david@zarel.net>
Date: Wed, 31 Oct 2018 23:01:40 +0000
Subject: [PATCH 0238/1129] ntp: fix ntpd shutdown by using upstream patch

After a series of amendments the seccomp.patch made ntpd work properly
but only on 32-bit systems.
This commit replaces that patch with the one submitted upstream by
cleverca22 and that fixes the issue also on 64-bit systems.

Close #38627, #45885
---
 pkgs/tools/networking/ntp/seccomp.patch | 32 +++++++++++++++++--------
 1 file changed, 22 insertions(+), 10 deletions(-)

diff --git a/pkgs/tools/networking/ntp/seccomp.patch b/pkgs/tools/networking/ntp/seccomp.patch
index 872bf8e7fcc2..c75536dac7fb 100644
--- a/pkgs/tools/networking/ntp/seccomp.patch
+++ b/pkgs/tools/networking/ntp/seccomp.patch
@@ -1,7 +1,18 @@
-diff -urN ntp-4.2.8p10.orig/ntpd/ntpd.c ntp-4.2.8p10/ntpd/ntpd.c
---- ntp-4.2.8p10.orig/ntpd/ntpd.c	2017-04-02 20:21:17.371319663 +0200
-+++ ntp-4.2.8p10/ntpd/ntpd.c	2017-04-02 21:26:02.766178723 +0200
-@@ -1157,10 +1157,12 @@
+From 881e427f3236046466bdb8235edf86e6dfa34391 Mon Sep 17 00:00:00 2001
+From: Michael Bishop <cleverca22@gmail.com>
+Date: Mon, 11 Jun 2018 08:30:48 -0300
+Subject: [PATCH] fix the seccomp filter to include a few previously missed
+ syscalls
+
+---
+ ntpd/ntpd.c | 8 ++++++++
+ 1 file changed, 8 insertions(+)
+
+diff --git a/ntpd/ntpd.c b/ntpd/ntpd.c
+index 2c7f02ec5..4c59dc2ba 100644
+--- a/ntpd/ntpd.c
++++ b/ntpd/ntpd.c
+@@ -1140,10 +1140,12 @@ int scmp_sc[] = {
  	SCMP_SYS(close),
  	SCMP_SYS(connect),
  	SCMP_SYS(exit_group),
@@ -14,15 +25,16 @@ diff -urN ntp-4.2.8p10.orig/ntpd/ntpd.c ntp-4.2.8p10/ntpd/ntpd.c
  	SCMP_SYS(getsockname),
  	SCMP_SYS(ioctl),
  	SCMP_SYS(lseek),
-@@ -1179,6 +1181,7 @@
+@@ -1162,6 +1164,8 @@ int scmp_sc[] = {
  	SCMP_SYS(sendto),
  	SCMP_SYS(setitimer),
  	SCMP_SYS(setsid),
-+        SCMP_SYS(setsockopt),
++	SCMP_SYS(setsockopt),
++	SCMP_SYS(openat),
  	SCMP_SYS(socket),
  	SCMP_SYS(stat),
  	SCMP_SYS(time),
-@@ -1195,9 +1198,11 @@
+@@ -1178,9 +1182,11 @@ int scmp_sc[] = {
  	SCMP_SYS(clock_settime),
  	SCMP_SYS(close),
  	SCMP_SYS(exit_group),
@@ -34,12 +46,12 @@ diff -urN ntp-4.2.8p10.orig/ntpd/ntpd.c ntp-4.2.8p10/ntpd/ntpd.c
  	SCMP_SYS(madvise),
  	SCMP_SYS(mmap),
  	SCMP_SYS(mmap2),
-@@ -1211,6 +1216,8 @@
+@@ -1194,6 +1200,8 @@ int scmp_sc[] = {
  	SCMP_SYS(select),
  	SCMP_SYS(setitimer),
  	SCMP_SYS(setsid),
-+        SCMP_SYS(setsockopt),
-+        SCMP_SYS(openat),
++	SCMP_SYS(setsockopt),
++	SCMP_SYS(openat),
  	SCMP_SYS(sigprocmask),
  	SCMP_SYS(sigreturn),
  	SCMP_SYS(socketcall),

From aa964c82d330abd8dd19804307793eee2e91eb47 Mon Sep 17 00:00:00 2001
From: John Ericson <John.Ericson@Obsidian.Systems>
Date: Thu, 6 Sep 2018 14:28:44 -0400
Subject: [PATCH 0239/1129] lib.systems.platforms: Add more ARM autodetection

---
 lib/systems/platforms.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/lib/systems/platforms.nix b/lib/systems/platforms.nix
index 56783d99e3d4..1ed072e94645 100644
--- a/lib/systems/platforms.nix
+++ b/lib/systems/platforms.nix
@@ -471,6 +471,7 @@ rec {
       "x86_64-linux" = pc64;
       "armv5tel-linux" = sheevaplug;
       "armv6l-linux" = raspberrypi;
+      "armv7a-linux" = armv7l-hf-multiplatform;
       "armv7l-linux" = armv7l-hf-multiplatform;
       "aarch64-linux" = aarch64-multiplatform;
       "mipsel-linux" = fuloong2f_n32;

From 8f2a1dc9554ec389b122f7d15eee3fd0ad5e6b9a Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Mon, 29 Oct 2018 19:06:17 -0500
Subject: [PATCH 0240/1129] regextester: 0.1.7 -> 1.0.1

* uses meson now
* crashes on start complaining schema not installed,
  so I added a postInstall that compiles the schema?
  Fixes the problem but I'm not particularly familiar
  with these bits so review appreciated.
---
 .../applications/misc/regextester/default.nix | 36 ++++++++++---------
 1 file changed, 20 insertions(+), 16 deletions(-)

diff --git a/pkgs/applications/misc/regextester/default.nix b/pkgs/applications/misc/regextester/default.nix
index c1b1cfb48a28..6f056292d775 100644
--- a/pkgs/applications/misc/regextester/default.nix
+++ b/pkgs/applications/misc/regextester/default.nix
@@ -3,47 +3,51 @@
 , gettext
 , libxml2
 , pkgconfig
-, gtk3
+, glib
 , granite
+, gtk3
 , gnome3
-, cmake
+, meson
 , ninja
-, vala
-, elementary-cmake-modules
+, gobjectIntrospection
+, gsettings-desktop-schemas
+, vala_0_40
 , wrapGAppsHook }:
 
 stdenv.mkDerivation rec {
   name = "regextester-${version}";
-  version = "0.1.7";
+  version = "1.0.1";
 
   src = fetchFromGitHub {
     owner = "artemanufrij";
     repo = "regextester";
     rev = version;
-    sha256 = "07shdm10dc7jz2hka5dc51yp81a0dgc47nmkrp6fs6r9wqx0j30n";
+    sha256 = "1xwwv1hccni1mrbl58f7ly4qfq6738vn24bcbl2q346633cd7kx3";
   };
 
-  XDG_DATA_DIRS = stdenv.lib.concatStringsSep ":" [
-    "${granite}/share"
-    "${gnome3.libgee}/share"
-  ];
-
   nativeBuildInputs = [
     pkgconfig
-    wrapGAppsHook
-    vala
-    cmake
+    meson
     ninja
     gettext
+    gobjectIntrospection
     libxml2
-    elementary-cmake-modules
+    vala_0_40 # should be `elementary.vala` when elementary attribute set is merged
+    wrapGAppsHook
   ];
   buildInputs = [
-    gtk3
+    glib
     granite
+    gtk3
+    gnome3.defaultIconTheme
     gnome3.libgee
+    gsettings-desktop-schemas
   ];
 
+  postInstall = ''
+    ${glib.dev}/bin/glib-compile-schemas $out/share/glib-2.0/schemas
+  '';
+
   meta = with stdenv.lib; {
     description = "A desktop application to test regular expressions interactively";
     homepage = https://github.com/artemanufrij/regextester;

From 144c7267dd4708bc141fc0c81e3670fc62bfb26a Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Wed, 31 Oct 2018 18:25:22 -0400
Subject: [PATCH 0241/1129] spice-up: 1.3.2 -> 1.6.0

---
 pkgs/applications/office/spice-up/default.nix | 18 +++++++++++-------
 1 file changed, 11 insertions(+), 7 deletions(-)

diff --git a/pkgs/applications/office/spice-up/default.nix b/pkgs/applications/office/spice-up/default.nix
index 520510698e3c..3141223d7283 100644
--- a/pkgs/applications/office/spice-up/default.nix
+++ b/pkgs/applications/office/spice-up/default.nix
@@ -12,25 +12,27 @@
 , ninja
 , libgudev
 , libevdev
-, vala
+, libsoup
+, vala_0_40
 , wrapGAppsHook }:
 
 stdenv.mkDerivation rec {
   name = "spice-up-${version}";
-  version = "1.3.2";
+  version = "1.7.0";
 
   src = fetchFromGitHub {
     owner = "Philip-Scott";
     repo = "Spice-up";
     rev = version;
-    sha256 = "087cdi7na93pgz7vf046h94v5ydvpiccpwhllq85ix8g4pa5rp85";
+    sha256 = "1qb1hlw7g581dmgg5mh832ixjkcgqm3lqzj6xma2cz8wdncwwjaq";
   };
+
   USER = "nix-build-user";
 
   nativeBuildInputs = [
     pkgconfig
     wrapGAppsHook
-    vala
+    vala_0_40 # should be `elementary.vala` when elementary attribute set is merged
     cmake
     ninja
     gettext
@@ -38,12 +40,14 @@ stdenv.mkDerivation rec {
     gobjectIntrospection # For setup hook
   ];
   buildInputs = [
-    gtk3
-    granite
+    gnome3.defaultIconTheme # should be `elementary.defaultIconTheme`when elementary attribute set is merged
     gnome3.libgee
+    granite
+    gtk3
     json-glib
-    libgudev
     libevdev
+    libgudev
+    libsoup
   ];
 
   meta = with stdenv.lib; {

From 73344be7bfd18dbeb5893b5dc12f567358782fb5 Mon Sep 17 00:00:00 2001
From: taku0 <mxxouy6x3m_github@tatapa.org>
Date: Thu, 1 Nov 2018 09:12:12 +0900
Subject: [PATCH 0242/1129] thunderbird-bin: 60.2.1 -> 60.3.0

---
 .../thunderbird-bin/release_sources.nix       | 466 +++++++++---------
 1 file changed, 233 insertions(+), 233 deletions(-)

diff --git a/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix b/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix
index a97dfce27448..576fbcc7b8a0 100644
--- a/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix
+++ b/pkgs/applications/networking/mailreaders/thunderbird-bin/release_sources.nix
@@ -1,585 +1,585 @@
 {
-  version = "60.2.1";
+  version = "60.3.0";
   sources = [
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/ar/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/ar/thunderbird-60.3.0.tar.bz2";
       locale = "ar";
       arch = "linux-x86_64";
-      sha512 = "026d4f74378ab0c94e14689161187793ec614a3c492a20d41401714d3a51a5478d060d0a6072a48e20dca88e7d0f4853efc293d36999ddfea431de466dcf94d6";
+      sha512 = "7cbd8c54fb220ad3f781cbc908d42f2723109786a1d7a947646bcc231e8849035c014335daa4ab85f9cd69646fa870cbfac3a0e0ec45d3fa82d0f0b74591b6a3";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/ast/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/ast/thunderbird-60.3.0.tar.bz2";
       locale = "ast";
       arch = "linux-x86_64";
-      sha512 = "a9156cd525d072711a78f7c45261d50e9057f1f797fe0847c0b52ebdcb42a9f283432da036c870209aedc37183b2fd4df12527e128f46a06d5eb289bdb11d379";
+      sha512 = "936a6366add759a89db391394479ff2e7865248b46c81cf45457ddb6fa6b37660ca9efa6f125fe97b22f6db2cdfae7ad0abefdc3874820fa3ef0bee91f6caa74";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/be/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/be/thunderbird-60.3.0.tar.bz2";
       locale = "be";
       arch = "linux-x86_64";
-      sha512 = "d75dc81e7ed655e5bc539362b4ea212ef47bed496c483a6401c8cc52fe2aa7c89f12024ef5364e8e44826c5df2a7cc0eae01a55cbfb22c78b7d29744e05c2389";
+      sha512 = "4580436c4719a2ca5821d9676aa6bfd5f2c731cdf0bdc2969fd0177bfd2c3cc2570479de60515e59b152e0aec4611c437fedce7d0bd13c7a06bcebafff0bd20d";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/bg/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/bg/thunderbird-60.3.0.tar.bz2";
       locale = "bg";
       arch = "linux-x86_64";
-      sha512 = "4302c20cec5239d3cffd1c5756537059f98eb19ebe6332ce255ddeb555f8f07b6ce03c18ccfd2adc7b1a51c954a0ef3dfbd98ca2a5238cf510d4abea48d10df9";
+      sha512 = "fafc3c2d186616be2b56e1087df528d3fb93ce431ae24c286c0209177a9dcf5f229ec5aa521d68ae531c5d763ca4c2e339945a7f874825e73ad63f86d13b510b";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/br/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/br/thunderbird-60.3.0.tar.bz2";
       locale = "br";
       arch = "linux-x86_64";
-      sha512 = "c22bd6606886c50fd782f1646f03917d9988a76020fc5e1a210e39a771980badcea965332ddc80f6f08fd062be4f08a499cbf7ea3585c78cb7089d40b40b92af";
+      sha512 = "71fe4d4e67971bfdc56ff6ad73eecffe15d2b808e07b25a7b4c827094b95afa7c04d451081dc45045e0d1eb83b15a3c8e964186a615f72a0a545dece221318d9";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/ca/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/ca/thunderbird-60.3.0.tar.bz2";
       locale = "ca";
       arch = "linux-x86_64";
-      sha512 = "7827c61dcc0294b85db7709029021daf52148a9d00b1d06c3a05f2e3591ca1e9e75a84bed3ac01da3a7f4af7bb2842b7574ec519849c8a5cde30600f0d237c85";
+      sha512 = "0be271223abd6f0fe79d0914b037cea5ea765ac1486a78922123666bec1ce8ec3bcbfa54c7fa552101adbe4a22bed0628eabed39391e4ca1dbccb118157fbded";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/cs/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/cs/thunderbird-60.3.0.tar.bz2";
       locale = "cs";
       arch = "linux-x86_64";
-      sha512 = "dd51fee0d4e2c87e841c1e13aeff54c49e375bb95ed69f539320815cb551d57853032d42346516627024f88ba77154a8f1aeba651f3e90b5d5ef206dfeb23c5b";
+      sha512 = "5d9f911af1f29928ddfb96d114fc7e484370e69f9f1aabdad753dae5ba0b6ad476d7b0c373919a2ccec3c2528f4fc78ee874a72fe691ad3e7d2e3e9e1650f76a";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/cy/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/cy/thunderbird-60.3.0.tar.bz2";
       locale = "cy";
       arch = "linux-x86_64";
-      sha512 = "29c32c26fc56d1fe7ae47fc93d121b8591e75f0d42b25ef3e1f9d98f3bfa66bdce551d96c8f98f553bca6425173da43f9e9a13f3f006db1259f1b69a68abb7cc";
+      sha512 = "18c7dabbcdb5235bcfe0dd01746f39d82d88bc71c2a4c4986ee268d15ab5a5cc060273f4783b2e472dafbcdcd98f29f8ad2c2b33ed87a9a3c484f61dbf0a7492";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/da/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/da/thunderbird-60.3.0.tar.bz2";
       locale = "da";
       arch = "linux-x86_64";
-      sha512 = "f57484cf06388193dbf3e6ec9c8c631829e6e0914dd785fa81b007bcd9789cdffc777d6f5df5939a1e125f66f9cd2a04d0b4a9dac5250aa615c7033bffb70d97";
+      sha512 = "f6dcc69ed4509b6d81b856cf6981d7d00e3ca3689f3e28b64b858d64f96ef96196a4b9b2c14ee5292507b5ba00bedbfd5ecf4b2db241068b36d8ee786eacf1c0";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/de/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/de/thunderbird-60.3.0.tar.bz2";
       locale = "de";
       arch = "linux-x86_64";
-      sha512 = "d12857d40c23f3817809e09e1edf9cf1131939d2aa5e830da2e9a13b4971096f33691deed0a29188510c2f84aeaa2a7ab704f54ced3c79885ea7b883cbd88f49";
+      sha512 = "a60ab91787961d405c926027570d161e9f6cfef77f6e8d40a24e97ac5c0c9b515a31dde5b9386e7b2a855f4970ff7533be4252474136e242a998cafab123de66";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/dsb/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/dsb/thunderbird-60.3.0.tar.bz2";
       locale = "dsb";
       arch = "linux-x86_64";
-      sha512 = "c65ce176520eaafe2afe54cf3ff6266bdeaef437c29f82e5580f286c31bb97881fe9724435995b5debd14306332ce2d379e45a30350296473f140d8caaeaee6f";
+      sha512 = "c827f7b392fe42cd2f6432870552239bd73e808ddfad10ac2c86968915697dfe119c965469baa6e2098bfd0fb61c36fbb5ed17378e423531b64b0ebd153602d4";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/el/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/el/thunderbird-60.3.0.tar.bz2";
       locale = "el";
       arch = "linux-x86_64";
-      sha512 = "8aad41efc6bae79e6e5f238ad6209f0cec7ff3ed0f82a4ef22a0e1e12c3ffb2577ff105983b1f1892591e1b2a58f2d8bb8d9ea51051ec930649dfa954341b219";
+      sha512 = "287be8c4ca83f7238833cad36de9476907bcf9c8c915626dd0c5114328160e75d95bfe25a0db10900f3c2a727e76f583fe1902a76c208106480fc3349c2ed917";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/en-GB/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/en-GB/thunderbird-60.3.0.tar.bz2";
       locale = "en-GB";
       arch = "linux-x86_64";
-      sha512 = "b75eab236a8749a185083c33b8f28492d903ee84b2b5a9aa3659e04eae7bc72cc93493a6cafa39ca29ebd0c065301e1091d21a23836b41bc4a5b60f4e61f6668";
+      sha512 = "aae1c22caeab14d262054af5855f6e983b34fc54e8f9d8cd0f49f5ae7ad3425d74f26025d85b4948a7d519ba771f7298ca7bf14fbd67c3d8ed84f0e9e394b9da";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/en-US/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/en-US/thunderbird-60.3.0.tar.bz2";
       locale = "en-US";
       arch = "linux-x86_64";
-      sha512 = "71308c1d6691894ef60144f7bc119709491eaa3af400197e4fec61f25231266b085e925fe1163d6de8d3d1f3ce34475a299968e9405341a9881c512fbd6e4362";
+      sha512 = "53b3872c3e4c49080e34540f95d5dec680b2320890601249eeb09e26d8aec66bce8e46e40368c8cfbc6937186a894a078348f64065ead28d32453a310a43891f";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/es-AR/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/es-AR/thunderbird-60.3.0.tar.bz2";
       locale = "es-AR";
       arch = "linux-x86_64";
-      sha512 = "061f0ea13b7c213ef2020aa2cf9ebee51b6b72f0de9b65ccb095f7e67152f5325d6806af90b5f600b7498d8cbd18916079e81914affd29308e04de0c7535939e";
+      sha512 = "9ae6f2a7c93a1d7a4efa22bdc8f6f5df8fb5a46f42507146eec7ceed6ee47d175d6c7791decc661be0c7d3cfd7513cc9a050138fe6661daf192f5f6064bc6a8f";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/es-ES/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/es-ES/thunderbird-60.3.0.tar.bz2";
       locale = "es-ES";
       arch = "linux-x86_64";
-      sha512 = "39c7b2806400cd57cd3e778d57f174a45eaa6e15bf1975d7e82f082d31d965e13a43ef130952e00300df9a13470c780c60f0ec9b398210b183593492d30c158a";
+      sha512 = "6dcc03919a384f7dcfae1264e3176d57ced792cb40ce7aa469a1c5229c9c97bcc83a0e58947f0ed14ff0ff74ddc529c74e7bcd3e38fb89edcdc4038f491a1c08";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/et/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/et/thunderbird-60.3.0.tar.bz2";
       locale = "et";
       arch = "linux-x86_64";
-      sha512 = "29b0399f7d896b09bb74b9ab78d10686061052493b880f72ee31c00db7cc226e3fe04e9519ff23e139c9644045bf9d6a45a8570d105a9675cbbbc310a930370f";
+      sha512 = "eb18921995d209a95444ae213740596ebb0d70d362662741a94a196e75c8b5857ff999ab4c822c95eed1ba3339038b82c725dc46e05d21bc4a5692323a87c589";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/eu/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/eu/thunderbird-60.3.0.tar.bz2";
       locale = "eu";
       arch = "linux-x86_64";
-      sha512 = "d53ced6a20ff89966888d9241fe483d0a6a5586ae8da4a6d9584f6298a8c254a06e2e1e4527536e38c42f92cc14b778cc8264f402efa6abbaba6ca52486c5e06";
+      sha512 = "5fc6dd684e9f1ec9be951929f2bbed0e75f5e2c0215206496a2efecb361f194a2009fe5bf2e91f09cae63dfc3f08b51e47a2a82d6b59d425df8dcf4ba316b271";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/fi/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/fi/thunderbird-60.3.0.tar.bz2";
       locale = "fi";
       arch = "linux-x86_64";
-      sha512 = "2fdf8b87cee0829e78d130ebf87b5d4bf62266abf17475d349440f7dca043ff7e1c14feef1f69b630cc81afb42bca52440643d0e2f833ce0a61f19e1c1f25721";
+      sha512 = "9da23f9aba9cc5f8939bdcf632f764566acbafc48bd05dc04036eae5fc04f41df506a4f80f3543b60a09b057939c074f3ae9eefc2353f765256dc9e0db1aa8e0";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/fr/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/fr/thunderbird-60.3.0.tar.bz2";
       locale = "fr";
       arch = "linux-x86_64";
-      sha512 = "288f8346cf90dd666cbb082f1761ad8fdd77a33e43bcca1cfa58c1f84c86bd6c3f7cd6d1d4effdb9ed77c6a50d07b8e5ef3505dc2e2098dc3c38ec32e7fa99c2";
+      sha512 = "0c844ef274cf892cadceea78c93efde1f7a110bfd0bdbe3cfdba5c23fef0e2fbb7b3fc3dc59f9b6edbb5c346a6d5ac06b69f4b19541942d09c5d088d6b0e0322";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/fy-NL/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/fy-NL/thunderbird-60.3.0.tar.bz2";
       locale = "fy-NL";
       arch = "linux-x86_64";
-      sha512 = "836a74aaf424a93304e12a412f0104ed5d577bd10ad1beceed1b78f2dac65d096103e9999298e25cdb8fea9d616fb4f814ad8c3bca84aeaff0cdcdc38b8763e9";
+      sha512 = "0df85e025f9a72255a23ca93a692a0f79a69c9447f8391ff97eea075077a147c6eb164f4851dee47d771dd3db3bacb3dcac71aed91b39fc34dbd65c8ae67bcf7";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/ga-IE/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/ga-IE/thunderbird-60.3.0.tar.bz2";
       locale = "ga-IE";
       arch = "linux-x86_64";
-      sha512 = "8c680f783e26193a26c507491b82128b123ed89e73dba328391d18264c5780ad88b9f077d4d12868dab6968f4be7e8f1c0dbe397196b556a5af31c07c1b1072e";
+      sha512 = "e1feb134d5ed55269fead90efea01f4d74ab03517def2fb9418435c5c699735d14ef3f64bfd33109b87bedefcb90034b1c12da74b798eb0e6b7bc74766d3f425";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/gd/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/gd/thunderbird-60.3.0.tar.bz2";
       locale = "gd";
       arch = "linux-x86_64";
-      sha512 = "e5b092f6b1b79b93225c0cae4022bde8452598d8c36b9e5ebd8fb4b9449d265df048526c30a1207b9ebeb7a5ad421ae77085306dbeb9d1d5b9c34decb98da1af";
+      sha512 = "3483c8655e81938554d95492952b967770cd659b625c25dc8864e59dfd5b6cc94bef725f495e725d6ceb24bc05edeb1d2c3ce41a303bc313715788ab03b75c9a";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-x86_64/gl/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-x86_64/gl/thunderbird-60.3.0.tar.bz2";
       locale = "gl";
       arch = "linux-x86_64";
-      sha512 = "ec235f57cdc56a66885f2d8098ab9ce80ab3fb87fb30b4c5cc97cde874ae321e326b3ce4fc9e69a6c7f0e61e43cbfb28c0392349151b25ee25a2503e13bf5c3a";
+      sha512 = "012ca498f3907f077c9e75e2bceb53fd0a781752b98319cf3b7ccb94a9112896dc2360d45acc440d7c50bdad0a15e125ad8123e13203a3a017e905c2f0e3d252";
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       arch = "linux-i686";
-      sha512 = "e28699b8884f7859323870987fe425af0a8408152a3d373007b634aea1868ab1de483830c07da7efa1fd49c96b5be6c52f5bef91c21c8de0533216be57644fc6";
+      sha512 = "051593bb3f0d0ce571aba9365455d97d392377b482db7fa0efa42a50ae52981c294e84f185abd0dd52a07fcbae852d55f0427ede0f5172632a8dac416ed528a1";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/si/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/si/thunderbird-60.3.0.tar.bz2";
       locale = "si";
       arch = "linux-i686";
-      sha512 = "e8ea29c2b77398611b79cebd674983f9458d07b4866597fa2bc35ce6d78bf81daebe4311e93604e4e5a391e632eaa9f6601eb75d022ef1b2dfc225b9cc61b0c9";
+      sha512 = "0e859053b989734e1134c365a28a5fdb628fd61125cd6c4d3b7cf598e861dc8b08330ec017c148eda8fd02df49a7688d6b5d7e057ab75b387362dca884c9a90d";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/sk/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/sk/thunderbird-60.3.0.tar.bz2";
       locale = "sk";
       arch = "linux-i686";
-      sha512 = "587f54eb86b0d0069433e14dce5f24e07ebc355f35f22eaba3ee0982e257782fe4ce5799ee0f7c733fa5a571935d2404ff950acf25b9be61dced6250d76611bd";
+      sha512 = "f7d8191bd1f8b78a1a04d669b5193d1067413f3d1f5600940129cf018e38aae85b2c7d274308ca56b2b871d3ec594703d5dde2d5ae12dafee0332ce37393142f";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/sl/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/sl/thunderbird-60.3.0.tar.bz2";
       locale = "sl";
       arch = "linux-i686";
-      sha512 = "196a31e47578bcf064b42c3d3ed1ac3b623a54b5694fab72e1177257d68c13013352228a09ec8dd4fc53d91a0e8036b2b7c815432fdd35c624852cd74f98541c";
+      sha512 = "c6e9ec49518f19bbfb045b85aec4f11e43645a55892cd3e8570f90b0c4fcc90f4e57848ed5419708c5544aa5df93b1a61786ca1422976938795bc7c5c2743098";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/sq/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/sq/thunderbird-60.3.0.tar.bz2";
       locale = "sq";
       arch = "linux-i686";
-      sha512 = "5a2b966e7119853fd98e976e555831058aa0c8cfdc463dcc79ca698aa4bb5d9b43b5fa2e6cb60a51cfee987c360c651de509463002aeb9c4e1fbe58b6fa4dd08";
+      sha512 = "e5586b535c014b400535680964c0ec03ef9a4d9cbd3bea4701293f681635faf6218744d8a8cb8781310ad4797143610ce1821de5c24232e990a24a87a57a7f2e";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/sr/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/sr/thunderbird-60.3.0.tar.bz2";
       locale = "sr";
       arch = "linux-i686";
-      sha512 = "62666fe7d94f3486d1d5df1cf479bd21a13b9bdc9a4f24fa1f280a838c008d28a2fd6e78ac445ea6ce126fc54b60151e3c4f9b3820e231c8593fa83aab1076fa";
+      sha512 = "7bbd3dd52ed742cc59d474f9235a1370d5cb8d9a805df87fffbc9eb13fa50d3bcba630a720effdfaab42580148a9328ba09869b09d06151eaa5ded55db13cbf3";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/sv-SE/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/sv-SE/thunderbird-60.3.0.tar.bz2";
       locale = "sv-SE";
       arch = "linux-i686";
-      sha512 = "b8f75bfdb3ad9ffa768a5ef4cdfed93004232d9d4f301b0e5b9ce56fd47d34efc779fafcb67c0b848a83ed59c1fa4bb17dbdb583599a99b78186489099159d92";
+      sha512 = "157772822f5f28fbbc4fe2b19b38c1cee3e11d7c62c802620e3b3df17898cf61d3c7ffd1e77e2373ddbfd67452e177eabdd34c3a025f7b4bbcb587dc2fa607b2";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/tr/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/tr/thunderbird-60.3.0.tar.bz2";
       locale = "tr";
       arch = "linux-i686";
-      sha512 = "b72e4c0d1564248927e1f2d8922651e3f7e37e99de77dc548508d4c0c1951e0e59b461cad18cf0dca0145d7465fe7bac93ecb4841c18db2b57822b0014b2f83e";
+      sha512 = "7748d29478930265e632973ccee211d3edef2e5ee5ff363145d57c9bbaf7257e8e963287eb854cce4de16ad976d54305be14bb848e164c9feaf223ad40e1c8e2";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/uk/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/uk/thunderbird-60.3.0.tar.bz2";
       locale = "uk";
       arch = "linux-i686";
-      sha512 = "7287cb6fce1c1482e0adf00598139b0e9e97371171a14b15ea42652c5890fb1c7de0aa213220444c68c5fe33a43f242f0475b5836deebcfe5fc6b52e21c195e5";
+      sha512 = "c8cc86f2c802f05131d2ceb2ab3fb1c3fc72c9253efd40833046c2022de61d581222275d84584938a3720f0d20df6eeee4ca50751554fe53fd7551577db0591b";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/vi/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/vi/thunderbird-60.3.0.tar.bz2";
       locale = "vi";
       arch = "linux-i686";
-      sha512 = "07886cd20ea43fbac59055d5cf34776fd38616477f8c55f4af78031034f8198ef57d716b365ee7a08f267fef0e3b50ba188dd31b1ba1508545b85fd7001f4326";
+      sha512 = "81bd7e3276e2b7ad50456d29fc84260b0cd694acaeea6818b0fdfcda91ed0e04b3c03b8721303c5b3a6cb8a7570c5b925922c9d6725a258c525250ff42c076e8";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/zh-CN/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/zh-CN/thunderbird-60.3.0.tar.bz2";
       locale = "zh-CN";
       arch = "linux-i686";
-      sha512 = "d34dde5c5f063d8d79a0aa032f54602570426bcce920810d1fc3c8e842827fdbb0b8b9dfa3e4049bf37de4c98356f7e87942bfdd3f7483bb6e3dc7ddd2ebd246";
+      sha512 = "2d120d666559ce4c0bbb1045d03aaa7c9f851c929b91fd6addc20c3a81ca7accba550f49540e3249ee227caa19aaf24414db995d930f0e02f651d75c230e3429";
     }
-    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.2.1/linux-i686/zh-TW/thunderbird-60.2.1.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/thunderbird/releases/60.3.0/linux-i686/zh-TW/thunderbird-60.3.0.tar.bz2";
       locale = "zh-TW";
       arch = "linux-i686";
-      sha512 = "e8de34531211a60099e677dd619e9e75883f0d5a935df4807b0075dc3d8c57c97dc364eef629896aa46066d290f7138ed67e002fe0cadf7e86b0c77cf99f080f";
+      sha512 = "ad36e3c82d68215765a83cf0098bfc392b2e3f32dbdb7998f54e4b83885f5be53a65cf814990237d7cd35b4695a23f5a4dff363e185b5c75a5aa2248c96ab80e";
     }
     ];
 }

From 7b66d96910cc19a78e642e592913fb8079186793 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Wed, 31 Oct 2018 20:08:48 -0500
Subject: [PATCH 0243/1129] webkitgtk: 2.22.2 -> 2.22.3

https://webkitgtk.org/2018/10/29/webkitgtk2.22.3-released.html
---
 pkgs/development/libraries/webkitgtk/2.22.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/webkitgtk/2.22.nix b/pkgs/development/libraries/webkitgtk/2.22.nix
index 7eae5819daf1..71b3dc24fe21 100644
--- a/pkgs/development/libraries/webkitgtk/2.22.nix
+++ b/pkgs/development/libraries/webkitgtk/2.22.nix
@@ -15,7 +15,7 @@ assert stdenv.isDarwin -> !enableGtk2Plugins;
 with stdenv.lib;
 stdenv.mkDerivation rec {
   name = "webkitgtk-${version}";
-  version = "2.22.2";
+  version = "2.22.3";
 
   meta = {
     description = "Web content rendering engine, GTK+ port";
@@ -28,7 +28,7 @@ stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "https://webkitgtk.org/releases/${name}.tar.xz";
-    sha256 = "1flrbr8pzbrlwv09b4pmgh6vklw7jghd2lgrhcb72vl9s7a8fm1l";
+    sha256 = "0wnddhm2bihmmkmi919lyxskvjk2wrzx6azkiypyjfwm08lm9zcx";
   };
 
   patches = optionals stdenv.isDarwin [

From 841a0bee5f4395ac678616c4ee7520a7b3550a71 Mon Sep 17 00:00:00 2001
From: Vaibhav Sagar <vaibhavsagar@gmail.com>
Date: Wed, 31 Oct 2018 22:05:59 -0400
Subject: [PATCH 0244/1129] lightstep-tracer-cpp: 0.36 -> 0.8.1

---
 .../lightstep-tracer-cpp/default.nix          | 22 ++++++++-----------
 1 file changed, 9 insertions(+), 13 deletions(-)

diff --git a/pkgs/development/libraries/lightstep-tracer-cpp/default.nix b/pkgs/development/libraries/lightstep-tracer-cpp/default.nix
index f2a8d75a9cbb..ab0e51bae261 100644
--- a/pkgs/development/libraries/lightstep-tracer-cpp/default.nix
+++ b/pkgs/development/libraries/lightstep-tracer-cpp/default.nix
@@ -1,6 +1,5 @@
-{ stdenv, lib, fetchFromGitHub, pkgconfig, protobuf, automake
-, autoreconfHook, zlib
-, enableGrpc ? false
+{ stdenv, lib, fetchFromGitHub, pkgconfig, protobuf, cmake, zlib
+, opentracing-cpp, enableGrpc ? false
 }:
 
 let
@@ -9,33 +8,31 @@ let
     fetchFromGitHub {
       owner = "lightstep";
       repo = "lightstep-tracer-common";
-      rev = "fe1f65f4a221746f9fffe8bf544c81d4e1b8aded";
-      sha256 = "1qqpjxfrjmhnhs15nhbfv28fsgzi57vmfabxlzc99j4vl78h5iln";
+      rev = "5fe3bf885bcece14c3c65df06c86c826ba45ad69";
+      sha256 = "1q39a0zaqbnqyhl2hza2xzc44235p65bbkfkzs2981niscmggq8w";
     };
 
 in
 
 stdenv.mkDerivation rec {
   name = "lightstep-tracer-cpp-${version}";
-  version = "0.36";
+  version = "0.8.1";
 
   src = fetchFromGitHub {
     owner = "lightstep";
     repo = "lightstep-tracer-cpp";
-    rev = "v0_36";
-    sha256 = "1sfj91bn7gw7fga7xawag076c8j9l7kiwhm4x3zh17qhycmaqq16";
+    rev = "v${version}";
+    sha256 = "1m4kl70lhvy1bsmkdh6bf2fddz5v1ikb27vgi99i2akpq40g4fvf";
   };
 
   postUnpack = ''
     cp -r ${common}/* $sourceRoot/lightstep-tracer-common
   '';
 
-  preConfigure = lib.optionalString (!enableGrpc) ''
-    configureFlagsArray+=("--disable-grpc")
-  '';
+  cmakeFlags = ["-DOPENTRACING_INCLUDE_DIR=${opentracing-cpp}/include" "-DOPENTRACING_LIBRARY=${opentracing-cpp}/lib/libopentracing.so"] ++ lib.optional (!enableGrpc) [ "-DWITH_GRPC=OFF" ];
 
   nativeBuildInputs = [
-    pkgconfig automake autoreconfHook
+    pkgconfig cmake
   ];
 
   buildInputs = [
@@ -48,6 +45,5 @@ stdenv.mkDerivation rec {
     license = licenses.mit;
     platforms = platforms.linux;
     maintainers = with maintainers; [ cstrahan ];
-    broken = true; # 2018-02-16
   };
 }

From 1836905bf16dcab518aaf57c1b0c23ec70d870cf Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Dani=C3=ABl=20de=20Kok?= <me@danieldk.eu>
Date: Thu, 1 Nov 2018 08:22:55 +0100
Subject: [PATCH 0245/1129] cargo-tree: 0.20.0 -> 0.21.0

---
 pkgs/tools/package-management/cargo-tree/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/tools/package-management/cargo-tree/default.nix b/pkgs/tools/package-management/cargo-tree/default.nix
index 90f2ad71fc21..dd7d88ff848c 100644
--- a/pkgs/tools/package-management/cargo-tree/default.nix
+++ b/pkgs/tools/package-management/cargo-tree/default.nix
@@ -1,17 +1,17 @@
 { stdenv, lib, rustPlatform, fetchFromGitHub, pkgconfig, cmake, curl, libiconv, darwin }:
 rustPlatform.buildRustPackage rec {
   name = "cargo-tree-${version}";
-  version = "0.20.0";
+  version = "0.21.0";
 
   src = fetchFromGitHub {
     owner = "sfackler";
     repo = "cargo-tree";
     rev = "v${version}";
 
-    sha256 = "197kbr7q7aqzv5l8xilz60m50rbkmfwfswyd6ka7w83j5bi88jw3";
+    sha256 = "0vr1mv8ns67kslxgwkvic8w86fvmqasxs6yd4yn21j49zg23866k";
   };
 
-  cargoSha256 = "1v84cj42ch49jrigrkivg99hzxa79jii8s3fddjk23hi1xx1c35y";
+  cargoSha256 = "0924bpcwz15zlp4vjaqap05s4nynw9mqz0np1kph3vx7aj9rsaw6";
 
   nativeBuildInputs = [ pkgconfig cmake ];
   buildInputs = [ curl ] ++ lib.optionals stdenv.isDarwin [ libiconv darwin.apple_sdk.frameworks.Security ];

From 718d3aea7ca70cb371282b7cca15c287a74553cc Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Tue, 30 Oct 2018 21:38:57 +0800
Subject: [PATCH 0246/1129] platformio: 3.5.3 -> 3.6.1

---
 pkgs/development/arduino/platformio/core.nix | 71 +++++++++++++++++---
 1 file changed, 62 insertions(+), 9 deletions(-)

diff --git a/pkgs/development/arduino/platformio/core.nix b/pkgs/development/arduino/platformio/core.nix
index de0585309996..5489adc5399d 100644
--- a/pkgs/development/arduino/platformio/core.nix
+++ b/pkgs/development/arduino/platformio/core.nix
@@ -1,17 +1,57 @@
-{ stdenv, buildPythonPackage, fetchPypi
+{ stdenv, lib, buildPythonApplication, fetchFromGitHub
 , bottle, click, colorama
 , lockfile, pyserial, requests
-, semantic-version
+, pytest, semantic-version, tox
 , git
 }:
 
-buildPythonPackage rec {
-  pname = "platformio";
-  version = "3.5.3";
+let
+  args = lib.concatStringsSep " " ((map (e: "--deselect tests/${e}") [
+    "commands/test_ci.py::test_ci_boards"
+    "commands/test_ci.py::test_ci_project_conf"
+    "commands/test_ci.py::test_ci_lib_and_board"
+    "commands/test_init.py::test_init_enable_auto_uploading"
+    "commands/test_init.py::test_init_custom_framework"
+    "commands/test_init.py::test_init_incorrect_board"
+    "commands/test_init.py::test_init_ide_atom"
+    "commands/test_init.py::test_init_ide_eclipse"
+    "commands/test_init.py::test_init_duplicated_boards"
+    "commands/test_init.py::test_init_special_board"
+    "commands/test_lib.py::test_search"
+    "commands/test_lib.py::test_install_duplicates"
+    "commands/test_lib.py::test_global_lib_update_check"
+    "commands/test_lib.py::test_global_lib_update"
+    "commands/test_lib.py::test_global_lib_uninstall"
+    "commands/test_lib.py::test_lib_show"
+    "commands/test_lib.py::test_lib_stats"
+    "commands/test_lib.py::test_global_install_registry"
+    "commands/test_lib.py::test_global_install_archive"
+    "commands/test_lib.py::test_global_install_repository"
+    "commands/test_lib.py::test_global_lib_list"
+    "commands/test_test.py::test_local_env"
+    "test_builder.py::test_build_flags"
+    "test_builder.py::test_build_unflags"
+    "test_misc.py::test_api_cache"
+    "test_misc.py::test_ping_internet_ips"
+    "test_pkgmanifest.py::test_packages"
+  ]) ++ (map (e: "--ignore=tests/${e}") [
+    "commands/test_boards.py"
+    "commands/test_platform.py"
+    "commands/test_update.py"
+    "test_maintenance.py"
+    "test_ino2cpp.py"
+  ]));
 
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "1l4s2xh1p9h767amk9zapzivz4irl2y3kff3dna6icvsgq6rz011";
+in buildPythonApplication rec {
+  pname = "platformio";
+  version = "3.6.1";
+
+  # pypi tarball doesn't contain tests
+  src = fetchFromGitHub {
+    owner = "platformio";
+    repo = "platformio-core";
+    rev = "v${version}";
+    sha256 = "01xz9figqrzb0m9467q14lg51vmgq0hbaap0xdx08n5v2ycmzj0v";
   };
 
   propagatedBuildInputs =  [
@@ -19,12 +59,25 @@ buildPythonPackage rec {
     pyserial requests semantic-version
   ];
 
+  HOME = "/tmp";
+
+  checkInputs = [ pytest tox ];
+
+  checkPhase = ''
+    runHook preCheck
+
+    py.test -v tests ${args}
+
+    runHook postCheck
+  '';
+
   patches = [ ./fix-searchpath.patch ];
 
   meta = with stdenv.lib; {
+    broken = stdenv.isAarch64;
     description = "An open source ecosystem for IoT development";
     homepage = http://platformio.org;
-    maintainers = with maintainers; [ mog makefu ];
     license = licenses.asl20;
+    maintainers = with maintainers; [ mog makefu ];
   };
 }

From 0111c7d8515d229cc19b487bb0c2e62571413e3c Mon Sep 17 00:00:00 2001
From: Edmund Wu <22758444+eadwu@users.noreply.github.com>
Date: Thu, 1 Nov 2018 05:41:28 -0400
Subject: [PATCH 0247/1129] pythonPackages.zstd: init at 1.3.5.1 (#49339)

---
 .../python-modules/zstd/default.nix           | 49 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  4 ++
 2 files changed, 53 insertions(+)
 create mode 100644 pkgs/development/python-modules/zstd/default.nix

diff --git a/pkgs/development/python-modules/zstd/default.nix b/pkgs/development/python-modules/zstd/default.nix
new file mode 100644
index 000000000000..53c3c8969abf
--- /dev/null
+++ b/pkgs/development/python-modules/zstd/default.nix
@@ -0,0 +1,49 @@
+{ stdenv, pkgconfig, fetchpatch, fetchFromGitHub, buildPythonPackage
+, zstd, pytest }:
+
+buildPythonPackage rec {
+  pname = "zstd";
+  version = "1.3.5.1";
+
+  # Switch back to fetchPypi when tests/ is included, see https://github.com/NixOS/nixpkgs/pull/49339
+  src = fetchFromGitHub {
+    owner = "sergey-dryabzhinsky";
+    repo = "python-zstd";
+    rev = "v${version}";
+    sha256 = "08n1vz4zavas4cgzpdfcbpy33lnv39xxhq5mgj0zv3xi03ypc1rl";
+  };
+
+  postPatch = ''
+    substituteInPlace setup.py \
+      --replace "/usr/bin/pkg-config" "${pkgconfig}/bin/pkg-config"
+  '';
+
+  nativeBuildInputs = [ pkgconfig ];
+  buildInputs = [ zstd ];
+
+  setupPyBuildFlags = [
+    "--external"
+    "--include-dirs=${zstd}/include"
+    "--libraries=zstd"
+    "--library-dirs=${zstd}/lib"
+  ];
+
+  # Running tests via setup.py triggers an attempt to recompile with the vendored zstd
+  ZSTD_EXTERNAL = 1;
+  VERSION = zstd.version;
+  PKG_VERSION = version;
+
+  checkInputs = [ pytest ];
+  checkPhase = ''
+    pytest
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Simple python bindings to Yann Collet ZSTD compression library";
+    homepage = https://github.com/sergey-dryabzhinsky/python-zstd;
+    license = licenses.bsd2;
+    maintainers = with maintainers; [
+      eadwu
+    ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index c25f80a25406..87285f774bf9 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -10903,6 +10903,10 @@ EOF
 
   todoist = callPackage ../development/python-modules/todoist { };
 
+  zstd = callPackage ../development/python-modules/zstd {
+    inherit (pkgs) zstd pkgconfig;
+  };
+
   zxcvbn-python = callPackage ../development/python-modules/zxcvbn-python { };
 
   incremental = callPackage ../development/python-modules/incremental { };

From b3bff5c249aecff11769ef0dbd9ae2747163d3ac Mon Sep 17 00:00:00 2001
From: Edmund Wu <22758444+eadwu@users.noreply.github.com>
Date: Thu, 1 Nov 2018 05:56:56 -0400
Subject: [PATCH 0248/1129] pythonPackages.trueskill: init at 0.4.5 (#49342)

---
 .../python-modules/trueskill/default.nix      | 28 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 30 insertions(+)
 create mode 100644 pkgs/development/python-modules/trueskill/default.nix

diff --git a/pkgs/development/python-modules/trueskill/default.nix b/pkgs/development/python-modules/trueskill/default.nix
new file mode 100644
index 000000000000..2106e4d2e76c
--- /dev/null
+++ b/pkgs/development/python-modules/trueskill/default.nix
@@ -0,0 +1,28 @@
+{ stdenv, buildPythonPackage, fetchPypi
+, six }:
+
+buildPythonPackage rec {
+  pname = "trueskill";
+  version = "0.4.5";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1fv7g1szyjykja9mzax2w4js7jm2z7wwzgnr5dqrsdi84j6v8qlx";
+  };
+
+  propagatedBuildInputs = [
+    six
+  ];
+
+  # Can't build distribute, see https://github.com/NixOS/nixpkgs/pull/49340
+  doCheck = false;
+
+  meta = with stdenv.lib; {
+    description = "The video game rating system";
+    homepage = https://trueskill.org;
+    license = licenses.bsd3;
+    maintainers = with maintainers; [
+      eadwu
+    ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 87285f774bf9..49bc322d4798 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -670,6 +670,8 @@ in {
     hdf5 = pkgs.hdf5.override { zlib = pkgs.zlib; };
   };
 
+  trueskill = callPackage ../development/python-modules/trueskill { };
+
   trustme = callPackage ../development/python-modules/trustme {};
 
   trio = callPackage ../development/python-modules/trio {};

From 15692e6f12267268a61c6ee455506258324e8e43 Mon Sep 17 00:00:00 2001
From: taku0 <mxxouy6x3m_github@tatapa.org>
Date: Wed, 26 Sep 2018 08:39:03 +0900
Subject: [PATCH 0249/1129] oraclejdk: remove version 10

---
 .../compilers/oraclejdk/jdk10-linux.nix       | 156 ------------------
 pkgs/top-level/all-packages.nix               |   9 -
 2 files changed, 165 deletions(-)
 delete mode 100644 pkgs/development/compilers/oraclejdk/jdk10-linux.nix

diff --git a/pkgs/development/compilers/oraclejdk/jdk10-linux.nix b/pkgs/development/compilers/oraclejdk/jdk10-linux.nix
deleted file mode 100644
index 23f44331dd89..000000000000
--- a/pkgs/development/compilers/oraclejdk/jdk10-linux.nix
+++ /dev/null
@@ -1,156 +0,0 @@
-{ swingSupport ? true
-, stdenv
-, requireFile
-, makeWrapper
-, file
-, xorg ? null
-, packageType ? "JDK" # JDK, JRE, or ServerJRE
-, glib
-, libxml2
-, ffmpeg_2
-, libxslt
-, libGL
-, freetype
-, fontconfig
-, gtk2
-, pango
-, cairo
-, alsaLib
-, atk
-, gdk_pixbuf
-, zlib
-, elfutils
-, setJavaClassPath
-}:
-
-assert swingSupport -> xorg != null;
-
-let
-  version = "10.0.2";
-
-  downloadUrlBase = http://www.oracle.com/technetwork/java/javase/downloads;
-
-  rSubPaths = [
-    "lib/jli"
-    "lib/server"
-    "lib"
-  ];
-
-in
-
-let result = stdenv.mkDerivation rec {
-  name = if packageType == "JDK"       then "oraclejdk-${version}"
-    else if packageType == "JRE"       then "oraclejre-${version}"
-    else if packageType == "ServerJRE" then "oracleserverjre-${version}"
-    else abort "unknown package Type ${packageType}";
-
-  src =
-    if packageType == "JDK" then
-      requireFile {
-        name = "jdk-${version}_linux-x64_bin.tar.gz";
-        url =  "${downloadUrlBase}/jdk10-downloads-4416644.html";
-        sha256 = "0arpzac64apji1s8d0gzizkvrjz0fbhz7l34af1j0365ac6w4cv6";
-      }
-    else if packageType == "JRE" then
-      requireFile {
-        name = "jre-${version}_linux-x64_bin.tar.gz";
-        url = "${downloadUrlBase}/jre10-downloads-4417026.html";
-        sha256 = "0pc4a0a3fl6874vfaflf6jvpm9da647vp41pj0hihkspjyjhjabx";
-      }
-    else if packageType == "ServerJRE" then
-      requireFile {
-        name = "serverjre-${version}_linux-x64_bin.tar.gz";
-        url = "${downloadUrlBase}/sjre10-downloads-4417025.html";
-        sha256 = "0hbcb4c6ncy0sbz02gyygyqcwkz0xpv4fwrx4sripia6vph9592c";
-      }
-    else abort "unknown package Type ${packageType}";
-
-  nativeBuildInputs = [ file ];
-
-  buildInputs = [ makeWrapper ];
-
-  # See: https://github.com/NixOS/patchelf/issues/10
-  dontStrip = 1;
-
-  installPhase = ''
-    cd ..
-
-    # Set PaX markings
-    exes=$(file $sourceRoot/bin/* 2> /dev/null | grep -E 'ELF.*(executable|shared object)' | sed -e 's/: .*$//')
-    for file in $exes; do
-      paxmark m "$file"
-      # On x86 for heap sizes over 700MB disable SEGMEXEC and PAGEEXEC as well.
-      ${stdenv.lib.optionalString stdenv.isi686 ''paxmark msp "$file"''}
-    done
-
-    mv $sourceRoot $out
-
-    shopt -s extglob
-    for file in $out/*
-    do
-      if test -f $file ; then
-        rm $file
-      fi
-    done
-
-    if test -z "$pluginSupport"; then
-      rm -f $out/bin/javaws
-    fi
-
-    mkdir $out/lib/plugins
-    ln -s $out/lib/libnpjp2.so $out/lib/plugins
-
-    # for backward compatibility
-    ln -s $out $out/jre
-
-    mkdir -p $out/nix-support
-    printWords ${setJavaClassPath} > $out/nix-support/propagated-build-inputs
-
-    # Set JAVA_HOME automatically.
-    cat <<EOF >> $out/nix-support/setup-hook
-    if [ -z "\$JAVA_HOME" ]; then export JAVA_HOME=$out; fi
-    EOF
-  '';
-
-  postFixup = ''
-    rpath+="''${rpath:+:}${stdenv.lib.concatStringsSep ":" (map (a: "$out/${a}") rSubPaths)}"
-
-    # set all the dynamic linkers
-    find $out -type f -perm -0100 \
-        -exec patchelf --interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" \
-        --set-rpath "$rpath" {} \;
-
-    find $out -name "*.so" -exec patchelf --set-rpath "$rpath" {} \;
-
-    # Oracle Java Mission Control needs to know where libgtk-x11 and related is
-    if test -x $out/bin/jmc; then
-      wrapProgram "$out/bin/jmc" \
-          --suffix-each LD_LIBRARY_PATH ':' "$rpath"
-    fi
-  '';
-
-  /**
-   * libXt is only needed on amd64
-   */
-  libraries =
-    [stdenv.cc.libc glib libxml2 ffmpeg_2 libxslt libGL xorg.libXxf86vm alsaLib fontconfig freetype pango gtk2 cairo gdk_pixbuf atk zlib elfutils] ++
-    (if swingSupport then [xorg.libX11 xorg.libXext xorg.libXtst xorg.libXi xorg.libXp xorg.libXt xorg.libXrender stdenv.cc.cc] else []);
-
-  rpath = stdenv.lib.strings.makeLibraryPath libraries;
-
-  passthru.mozillaPlugin = "/lib/plugins";
-
-  passthru.jre = result; # FIXME: use multiple outputs or return actual JRE package
-
-  passthru.home = result;
-
-  # for backward compatibility
-  passthru.architecture = "";
-
-  meta = with stdenv.lib; {
-    license = licenses.unfree;
-    platforms = [ "x86_64-linux" ]; # some inherit jre.meta.platforms
-    knownVulnerabilities = [ "Support ended in September 2018.  Use OpenJDK or JDK 8." ];
-  };
-
-}; in result
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 89b32ec3bfaf..a129c119fbc6 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -7025,18 +7025,12 @@ with pkgs;
 
   oraclejdk8psu = pkgs.oraclejdk8psu_distro true false;
 
-  oraclejdk10 = pkgs.oraclejdk10distro "JDK" false;
-
   oraclejre = lowPrio (pkgs.jdkdistro false false);
 
   oraclejre8 = lowPrio (pkgs.oraclejdk8distro false false);
 
   oraclejre8psu = lowPrio (pkgs.oraclejdk8psu_distro false false);
 
-  oraclejre10 = lowPrio (pkgs.oraclejdk10distro "JRE" false);
-
-  oracleserverjre10 = lowPrio (pkgs.oraclejdk10distro "ServerJRE" false);
-
   jrePlugin = jre8Plugin;
 
   jre8Plugin = lowPrio (pkgs.oraclejdk8distro false true);
@@ -7051,9 +7045,6 @@ with pkgs;
     (if pluginSupport then appendToName "with-plugin" else x: x)
       (callPackage ../development/compilers/oraclejdk/jdk8psu-linux.nix { inherit installjdk pluginSupport; });
 
-  oraclejdk10distro = packageType: _:
-      (callPackage ../development/compilers/oraclejdk/jdk10-linux.nix { inherit packageType; });
-
   javacard-devkit = pkgsi686Linux.callPackage ../development/compilers/javacard-devkit { };
 
   jikes = callPackage ../development/compilers/jikes { };

From 84db315fb364972cd4d5687b52adb363900d3d86 Mon Sep 17 00:00:00 2001
From: Periklis Tsirakidis <periklis.tsirakidis@holidaycheck.com>
Date: Thu, 1 Nov 2018 13:17:01 +0100
Subject: [PATCH 0250/1129] libid3tag: patch CVE-2017-11550 and CVE-2017-11551

---
 .../CVE-2017-11550-and-CVE-2017-11551.patch         | 13 +++++++++++++
 pkgs/development/libraries/libid3tag/default.nix    |  5 ++++-
 2 files changed, 17 insertions(+), 1 deletion(-)
 create mode 100644 pkgs/development/libraries/libid3tag/CVE-2017-11550-and-CVE-2017-11551.patch

diff --git a/pkgs/development/libraries/libid3tag/CVE-2017-11550-and-CVE-2017-11551.patch b/pkgs/development/libraries/libid3tag/CVE-2017-11550-and-CVE-2017-11551.patch
new file mode 100644
index 000000000000..b1f9d0978cec
--- /dev/null
+++ b/pkgs/development/libraries/libid3tag/CVE-2017-11550-and-CVE-2017-11551.patch
@@ -0,0 +1,13 @@
+Common subdirectories: libid3tag-0.15.1b/msvc++ and libid3tag-0.15.1b-patched/msvc++
+diff -uwp libid3tag-0.15.1b/utf16.c libid3tag-0.15.1b-patched/utf16.c
+--- libid3tag-0.15.1b/utf16.c	2004-01-23 10:41:32.000000000 +0100
++++ libid3tag-0.15.1b-patched/utf16.c	2018-11-01 13:12:00.866050641 +0100
+@@ -250,6 +250,8 @@ id3_ucs4_t *id3_utf16_deserialize(id3_by
+   id3_ucs4_t *ucs4;
+ 
+   end = *ptr + (length & ~1);
++  if (end == *ptr)
++    return 0;
+ 
+   utf16 = malloc((length / 2 + 1) * sizeof(*utf16));
+   if (utf16 == 0)
diff --git a/pkgs/development/libraries/libid3tag/default.nix b/pkgs/development/libraries/libid3tag/default.nix
index 0289a5331f89..4b7d9bdc2e32 100644
--- a/pkgs/development/libraries/libid3tag/default.nix
+++ b/pkgs/development/libraries/libid3tag/default.nix
@@ -14,7 +14,10 @@ stdenv.mkDerivation rec {
 
   propagatedBuildInputs = [ zlib gperf ];
 
-  patches = [ ./debian-patches.patch ];
+  patches = [
+    ./debian-patches.patch
+    ./CVE-2017-11550-and-CVE-2017-11551.patch
+  ];
 
   preConfigure = ''
     configureFlagsArray+=(

From f9aaf7134b0964ccdd69323d73a0f422707351cd Mon Sep 17 00:00:00 2001
From: Vincent Weisner <vincentweisner@icloud.com>
Date: Thu, 1 Nov 2018 10:00:55 -0400
Subject: [PATCH 0251/1129] Update parse.nix

---
 lib/systems/parse.nix | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/lib/systems/parse.nix b/lib/systems/parse.nix
index db97a5c4b33b..ea1cd58bb4ba 100644
--- a/lib/systems/parse.nix
+++ b/lib/systems/parse.nix
@@ -80,6 +80,7 @@ rec {
     armv8r   = { bits = 32; significantByte = littleEndian; family = "arm"; version = "8"; };
     armv8m   = { bits = 32; significantByte = littleEndian; family = "arm"; version = "8"; };
     aarch64  = { bits = 64; significantByte = littleEndian; family = "arm"; version = "8"; };
+    aarch64_be = { bits = 64; significantByte = bigEndian; family = "arm" version = "8"; };
 
     i686     = { bits = 32; significantByte = littleEndian; family = "x86"; };
     x86_64   = { bits = 64; significantByte = littleEndian; family = "x86"; };
@@ -92,6 +93,7 @@ rec {
     powerpc  = { bits = 32; significantByte = bigEndian;    family = "power"; };
     powerpc64 = { bits = 64; significantByte = bigEndian; family = "power"; };
     powerpc64le = { bits = 64; significantByte = littleEndian; family = "power"; };
+    powerpcle = { bits = 32; significantByte = littleEndian; family = "power"; };
 
     riscv32  = { bits = 32; significantByte = littleEndian; family = "riscv"; };
     riscv64  = { bits = 64; significantByte = littleEndian; family = "riscv"; };
@@ -101,6 +103,8 @@ rec {
 
     wasm32   = { bits = 32; significantByte = littleEndian; family = "wasm"; };
     wasm64   = { bits = 64; significantByte = littleEndian; family = "wasm"; };
+    
+    alpha    = { bits = 64; significantBye = littleEndian; family = "alpha"; };
 
     avr      = { bits = 8; family = "avr"; };
   };

From aa75ebdcd3c24981c6b9cd37010726c7a2bad241 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <Mic92@users.noreply.github.com>
Date: Thu, 1 Nov 2018 11:14:18 -0400
Subject: [PATCH 0252/1129] CPU Fix

Co-Authored-By: vincrusher <vincentweisner@icloud.com>
---
 lib/systems/parse.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lib/systems/parse.nix b/lib/systems/parse.nix
index ea1cd58bb4ba..2bf6d6947701 100644
--- a/lib/systems/parse.nix
+++ b/lib/systems/parse.nix
@@ -80,7 +80,7 @@ rec {
     armv8r   = { bits = 32; significantByte = littleEndian; family = "arm"; version = "8"; };
     armv8m   = { bits = 32; significantByte = littleEndian; family = "arm"; version = "8"; };
     aarch64  = { bits = 64; significantByte = littleEndian; family = "arm"; version = "8"; };
-    aarch64_be = { bits = 64; significantByte = bigEndian; family = "arm" version = "8"; };
+    aarch64_be = { bits = 64; significantByte = bigEndian; family = "arm"; version = "8"; };
 
     i686     = { bits = 32; significantByte = littleEndian; family = "x86"; };
     x86_64   = { bits = 64; significantByte = littleEndian; family = "x86"; };

From db1a40a882987f94f8580b2b219a5857a3789a77 Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Thu, 1 Nov 2018 23:39:37 +0800
Subject: [PATCH 0253/1129] home-assistant: use SIGINT instead of SIGTERM to
 shut down (#49571)

hass will ignore the standard SIGTERM sent by systemd during stop/restart and we
then have to wait for the timeout after which systemd will forcefully kill the
process.

If instead if we send SIGINT, hass will shut down nicely.

There are many issues reported upstream about the inability to shut down/restart
and it is *supposed* to work with SIGTERM but doesn't.
---
 nixos/modules/services/misc/home-assistant.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/nixos/modules/services/misc/home-assistant.nix b/nixos/modules/services/misc/home-assistant.nix
index 0756e81612ac..2e9aa33aeeee 100644
--- a/nixos/modules/services/misc/home-assistant.nix
+++ b/nixos/modules/services/misc/home-assistant.nix
@@ -157,6 +157,7 @@ in {
         Restart = "on-failure";
         ProtectSystem = "strict";
         ReadWritePaths = "${cfg.configDir}";
+        KillSignal = "SIGINT";
         PrivateTmp = true;
         RemoveIPC = true;
       };

From a06fde5e24bf7ee3d1e9eb0b5916de36c69037e4 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Thu, 1 Nov 2018 10:38:38 -0500
Subject: [PATCH 0254/1129] nlohmann_json: 3.3.0 -> 3.4.0

https://github.com/nlohmann/json/releases/tag/v3.4.0
---
 pkgs/development/libraries/nlohmann_json/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/nlohmann_json/default.nix b/pkgs/development/libraries/nlohmann_json/default.nix
index 25d4386cec2c..d57461853d33 100644
--- a/pkgs/development/libraries/nlohmann_json/default.nix
+++ b/pkgs/development/libraries/nlohmann_json/default.nix
@@ -3,13 +3,13 @@
 
 stdenv.mkDerivation rec {
   name = "nlohmann_json-${version}";
-  version = "3.3.0";
+  version = "3.4.0";
 
   src = fetchFromGitHub {
     owner = "nlohmann";
     repo = "json";
     rev = "v${version}";
-    sha256 = "1plg9l1avnjsg6khrd88yj9cbzbbkwzpc5synmicqndb35wndn5h";
+    sha256 = "1140gz5za7yvfcphdgxaq1dm4b1vxy1m8d1w0s0smv4vvdvl26ym";
   };
 
   nativeBuildInputs = [ cmake ];

From 81f39ee22f40af86a3b8ec155be63f9b641769ab Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Wed, 31 Oct 2018 10:14:06 -0500
Subject: [PATCH 0255/1129] slack-term: init at 0.4.1

---
 .../instant-messengers/slack-term/default.nix | 23 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 25 insertions(+)
 create mode 100644 pkgs/applications/networking/instant-messengers/slack-term/default.nix

diff --git a/pkgs/applications/networking/instant-messengers/slack-term/default.nix b/pkgs/applications/networking/instant-messengers/slack-term/default.nix
new file mode 100644
index 000000000000..79464f54232c
--- /dev/null
+++ b/pkgs/applications/networking/instant-messengers/slack-term/default.nix
@@ -0,0 +1,23 @@
+{ stdenv, buildGoPackage, fetchFromGitHub }:
+
+buildGoPackage rec {
+  # https://github.com/erroneousboat/slack-term
+  name = "slack-term-${version}";
+  version = "0.4.1";
+
+  goPackagePath = "github.com/erroneousboat/slack-term";
+
+  src = fetchFromGitHub {
+    owner = "erroneousboat";
+    repo = "slack-term";
+    rev = "v${version}";
+    sha256 = "1340bq7h31fxykxbxpn6hv7n2hmjf20f8vg5gan9pjf5jaa6kfza";
+  };
+
+  meta = with stdenv.lib; {
+    description = "Slack client for your terminal";
+    homepage = https://github.com/erroneousboat/slack-term;
+    license = licenses.mit;
+    maintainers = with maintainers; [ dtzWill ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 89b32ec3bfaf..531753c19b42 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -17240,6 +17240,8 @@ with pkgs;
 
   slack-cli = callPackage ../tools/networking/slack-cli { };
 
+  slack-term = callPackage ../applications/networking/instant-messengers/slack-term { };
+
   singularity = callPackage ../applications/virtualization/singularity { };
 
   spectmorph = callPackage ../applications/audio/spectmorph { };

From efbf9afb17cc2032f599ccb36479ed158a62f60a Mon Sep 17 00:00:00 2001
From: Matthieu Coudron <mattator@gmail.com>
Date: Wed, 19 Sep 2018 01:34:33 +0900
Subject: [PATCH 0256/1129] gImageReader: init at 3.2.99

gImageReader is a GUI for tesseract, an optical character recognition engine.
While the UI supports Qt/Gtk, I have only added the gtk one in the nix derivation.
---
 .../misc/gImageReader/default.nix             | 71 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 2 files changed, 73 insertions(+)
 create mode 100644 pkgs/applications/misc/gImageReader/default.nix

diff --git a/pkgs/applications/misc/gImageReader/default.nix b/pkgs/applications/misc/gImageReader/default.nix
new file mode 100644
index 000000000000..16693cfbf09c
--- /dev/null
+++ b/pkgs/applications/misc/gImageReader/default.nix
@@ -0,0 +1,71 @@
+{ stdenv, fetchFromGitHub, cmake, pkgconfig, libuuid
+, sane-backends, podofo, libjpeg, djvulibre, libxmlxx3, libzip, tesseract
+, enchant, intltool, poppler, json-glib
+, ninja
+, python3
+
+# Gtk deps
+# upstream gImagereader supports Qt too
+, gtk3, gobjectIntrospection, wrapGAppsHook
+, gnome3, gtkspell3, gtkspellmm, cairomm
+}:
+
+let
+  variant = "gtk";
+  pythonEnv = python3.withPackages( ps: with ps;[ pygobject3 ] );
+in
+stdenv.mkDerivation rec {
+  name = "gImageReader-${version}";
+  version = "3.2.99";
+
+  src = fetchFromGitHub {
+    owner= "manisandro";
+    repo = "gImageReader";
+    rev = "v${version}";
+    sha256 = "19dbxq83j77lbvi10a8x0xxgw5hbsqyc852c196zzvmwk3km6pnc";
+  };
+
+  nativeBuildInputs = [
+    cmake ninja
+    intltool
+    pkgconfig
+    pythonEnv
+
+    # Gtk specific
+    wrapGAppsHook
+    gobjectIntrospection
+  ];
+
+  buildInputs = [
+    enchant
+    libxmlxx3
+    libzip
+    libuuid
+    sane-backends
+    podofo
+    libjpeg
+    djvulibre
+    tesseract
+    poppler
+
+    # Gtk specific
+    gnome3.gtkmm
+    gtkspell3
+    gtkspellmm
+    gnome3.gtksourceview
+    gnome3.gtksourceviewmm
+    cairomm
+    json-glib
+  ];
+
+  # interface type can be where <type> is either gtk, qt5, qt4
+  cmakeFlags = [ "-DINTERFACE_TYPE=${variant}" ];
+
+  meta = with stdenv.lib; {
+    description = "A simple Gtk/Qt front-end to tesseract-ocr";
+    homepage = https://github.com/manisandro/gImageReader;
+    license = licenses.gpl3Plus;
+    maintainers = with maintainers; [teto];
+    platforms = platforms.linux;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 89b32ec3bfaf..246f40efdacd 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -7984,6 +7984,8 @@ with pkgs;
 
   jython = callPackage ../development/interpreters/jython {};
 
+  gImageReader = callPackage ../applications/misc/gImageReader { };
+
   guile-cairo = callPackage ../development/guile-modules/guile-cairo { };
 
   guile-fibers = callPackage ../development/guile-modules/guile-fibers { };

From 4e89814fc6b721c849e0ce519f255ae1550f5511 Mon Sep 17 00:00:00 2001
From: Michael Roitzsch <reactorcontrol@icloud.com>
Date: Thu, 1 Nov 2018 15:28:41 +0100
Subject: [PATCH 0257/1129] swift: 4.1.3 -> 4.2.1

* necessary tweaks and patches to get swift 4.2.1 to build
* disabled more tests because they would require additional patching
* delete empty directories from final build output
* some minor cleanup
---
 pkgs/development/compilers/swift/default.nix  | 43 ++++++++++---------
 ...sets-linux-don-t-require-using-Ninja.patch |  2 +-
 ...ts-linux-allow-custom-install-prefix.patch |  2 +-
 ...sets-linux-plumb-extra-cmake-options.patch |  2 +-
 .../swift/patches/build-script-pax.patch      |  4 +-
 .../swift/patches/glibc-arch-headers.patch    | 13 ++++++
 .../swift/patches/llvm-include-dirs.patch     | 13 ++++++
 pkgs/development/compilers/swift/purity.patch |  2 +-
 8 files changed, 54 insertions(+), 27 deletions(-)
 create mode 100644 pkgs/development/compilers/swift/patches/glibc-arch-headers.patch
 create mode 100644 pkgs/development/compilers/swift/patches/llvm-include-dirs.patch

diff --git a/pkgs/development/compilers/swift/default.nix b/pkgs/development/compilers/swift/default.nix
index 233eb6647c09..bbfa1be8f921 100644
--- a/pkgs/development/compilers/swift/default.nix
+++ b/pkgs/development/compilers/swift/default.nix
@@ -32,11 +32,10 @@
 , makeWrapper
 , gnumake
 , file
-#, systemtap
 }:
 
 let
-  v_base = "4.1.3";
+  v_base = "4.2.1";
   version = "${v_base}-RELEASE";
   version_friendly = "${v_base}";
 
@@ -54,15 +53,15 @@ let
     # For more inforation, see: https://github.com/apple/swift/pull/3594#issuecomment-234169759
     clang = fetch {
       repo = "swift-clang";
-      sha256 = "0j8bi6jv4m4hqiib02q5cvnxd9j6bwiri853x6px86vai3mdff0h";
+      sha256 = "0l6w4xzpl3w2nax9a0b885nfzhfj38p2g99158nb5bzfd4s0man7";
     };
     llvm = fetch {
       repo = "swift-llvm";
-      sha256 = "0q5cv4iydm8c1kcax32573y3q2cbpihwgj5aa8ws1fnpy4jvq934";
+      sha256 = "1664zwxbq0a1cmxr9n5a0vw6vdk6ygr7rpglpdsfc7ki857vpsyv";
     };
     compilerrt = fetch {
       repo = "swift-compiler-rt";
-      sha256 = "1wkymmxi2v759xkwlzfrq9rivndjfvp6ikrzz10mvvrvyvrgwqnl";
+      sha256 = "19s6qxn4i0kxpf39xjp2i7zg427iinbmaxqkbb1p91g616y367sf";
     };
     cmark = fetch {
       repo = "swift-cmark";
@@ -70,32 +69,32 @@ let
     };
     lldb = fetch {
       repo = "swift-lldb";
-      sha256 = "1d0pa7xm289bjb6r52hkkmlngkqkwbwgixnmm30bin2q18mkxk7s";
+      sha256 = "00kz0xhj1p6ckyandj2gs1yfl29kxv84x9pfph00r8crbkd2jz7b";
     };
     llbuild = fetch {
       repo = "swift-llbuild";
-      sha256 = "04y0ihfyam2n671vmpk9gy0gb9lb3ivh6mr19862p5kg5bmrcic1";
+      sha256 = "1mkkhydshhxr28igbldzr0hhqvb6ql43cpf3ba5vglfkbcz6wh6q";
     };
     pm = fetch {
       repo = "swift-package-manager";
-      sha256 = "08d87fc29qq7m92jaxkiczsa7b567pwbibiwwkzdrj6a0gr11qn3";
+      sha256 = "1aqvmgq9g5zs4k2qnkvw3h3mar66d690hqq6g2dmrapsyb321j9l";
     };
     xctest = fetch {
       repo = "swift-corelibs-xctest";
-      sha256 = "1alkgxx8jsr2jjv2kchnjaaddb1byjwim015m1z3qxh6lknqm0k5";
+      sha256 = "1n4w7bfgy73vjzbvbphlwayy0dw73bbrayrpkqq8lbidg0x9lam8";
     };
     foundation = fetch {
       repo = "swift-corelibs-foundation";
-      sha256 = "1bhrag63rmz41bg2g6ap01qrdpq37hislgf5hg6myy2v69q7mahx";
+      sha256 = "1bfnkj8s3v327cy0czkngz0ryzmz7amjzkkxbsg2zyrhf9a9f0f7";
     };
     libdispatch = fetch {
       repo = "swift-corelibs-libdispatch";
-      sha256 = "198vskbajch8s168a649qz5an92i2mxmmmzcjlgxlzh38fgxri0n";
+      sha256 = "0fibrx54nbaawhsgd7cbr356ji9qvf8y8ahd5bdx28fpj6q0cnwc";
       fetchSubmodules = true;
     };
     swift = fetch {
       repo = "swift";
-      sha256 = "1ydx11pkvaasgjbr29lnha0lpnak758gd5l0aqzmp3q6mcyvfm7a";
+      sha256 = "0y277wi0m6zp1yph9s14mmc65m21q5fm6lgzkn2rkrbaz25fdzak";
     };
   };
 
@@ -111,7 +110,6 @@ let
     ncurses
     sqlite
     swig
-    #    systemtap?
   ];
 
   cmakeFlags = [
@@ -215,8 +213,11 @@ stdenv.mkDerivation rec {
 
     substituteInPlace swift/stdlib/public/Platform/CMakeLists.txt \
       --replace '/usr/include' "${stdenv.cc.libc.dev}/include"
+    substituteInPlace swift-corelibs-libdispatch/src/CMakeLists.txt \
+      --replace '/usr/include' "${stdenv.cc.libc.dev}/include"
     substituteInPlace swift/utils/build-script-impl \
       --replace '/usr/include/c++' "${clang.cc.gcc}/include/c++"
+    patch -p1 -d swift -i ${./patches/glibc-arch-headers.patch}
   '' + stdenv.lib.optionalString stdenv.needsPax ''
     patch -p1 -d swift -i ${./patches/build-script-pax.patch}
   '' + ''
@@ -228,24 +229,24 @@ stdenv.mkDerivation rec {
       -e 's/^test-installable-package$/# \0/' \
       -e 's/^test$/# \0/' \
       -e 's/^validation-test$/# \0/' \
-      -e 's/^long-test$/# \0/'
+      -e 's/^long-test$/# \0/' \
+      -e 's/^stress-test$/# \0/' \
+      -e 's/^test-optimized$/# \0/'
 
     # https://bugs.swift.org/browse/SR-5779
     sed -i -e 's|"-latomic"|"-Wl,-rpath,${clang.cc.gcc.lib}/lib" "-L${clang.cc.gcc.lib}/lib" "-latomic"|' swift/cmake/modules/AddSwift.cmake
 
     substituteInPlace clang/lib/Driver/ToolChains/Linux.cpp \
-      --replace '  addPathIfExists(D, SysRoot + "/usr/lib", Paths);' \
-                '  addPathIfExists(D, SysRoot + "/usr/lib", Paths); addPathIfExists(D, "${glibc}/lib", Paths);'
+      --replace 'SysRoot + "/usr/lib' '"${glibc}/lib" "'
+    patch -p1 -d clang -i ${./patches/llvm-include-dirs.patch}
     patch -p1 -d clang -i ${./purity.patch}
 
     # Workaround hardcoded dep on "libcurses" (vs "libncurses"):
     sed -i 's,curses,ncurses,' llbuild/*/*/CMakeLists.txt
 
-    # This test fails on one of my machines, not sure why.
-    # Disabling for now.
-    rm llbuild/tests/Examples/buildsystem-capi.llbuild
-
     PREFIX=''${out/#\/}
+    substituteInPlace swift-corelibs-foundation/build.py \
+      --replace usr/lib "$PREFIX/lib"
     substituteInPlace swift-corelibs-xctest/build_script.py \
       --replace usr "$PREFIX"
     substituteInPlace swiftpm/Utilities/bootstrap \
@@ -263,6 +264,7 @@ stdenv.mkDerivation rec {
     # Extract the generated tarball into the store
     PREFIX=''${out/#\/}
     tar xf $INSTALLABLE_PACKAGE -C $out --strip-components=3 $PREFIX
+    find $out -type d -empty -delete
 
     paxmark pmr $out/bin/swift
     paxmark pmr $out/bin/*
@@ -290,4 +292,3 @@ stdenv.mkDerivation rec {
     broken = stdenv.isAarch64; # 2018-09-04, never built on Hydra
   };
 }
-
diff --git a/pkgs/development/compilers/swift/patches/0001-build-presets-linux-don-t-require-using-Ninja.patch b/pkgs/development/compilers/swift/patches/0001-build-presets-linux-don-t-require-using-Ninja.patch
index 6ef83754a674..f2b30e5dcdb6 100644
--- a/pkgs/development/compilers/swift/patches/0001-build-presets-linux-don-t-require-using-Ninja.patch
+++ b/pkgs/development/compilers/swift/patches/0001-build-presets-linux-don-t-require-using-Ninja.patch
@@ -11,7 +11,7 @@ diff --git a/utils/build-presets.ini b/utils/build-presets.ini
 index 7ee57ad2df..e6b0af3581 100644
 --- a/utils/build-presets.ini
 +++ b/utils/build-presets.ini
-@@ -686,7 +686,7 @@ swiftpm
+@@ -717,7 +717,7 @@ swiftpm
  xctest
  dash-dash
  
diff --git a/pkgs/development/compilers/swift/patches/0002-build-presets-linux-allow-custom-install-prefix.patch b/pkgs/development/compilers/swift/patches/0002-build-presets-linux-allow-custom-install-prefix.patch
index 66723f1cdf39..612b33cdb483 100644
--- a/pkgs/development/compilers/swift/patches/0002-build-presets-linux-allow-custom-install-prefix.patch
+++ b/pkgs/development/compilers/swift/patches/0002-build-presets-linux-allow-custom-install-prefix.patch
@@ -11,7 +11,7 @@ diff --git a/utils/build-presets.ini b/utils/build-presets.ini
 index e6b0af3581..1095cbaab7 100644
 --- a/utils/build-presets.ini
 +++ b/utils/build-presets.ini
-@@ -708,7 +708,7 @@ install-lldb
+@@ -723,7 +723,7 @@ install-lldb
  install-llbuild
  install-swiftpm
  install-xctest
diff --git a/pkgs/development/compilers/swift/patches/0004-build-presets-linux-plumb-extra-cmake-options.patch b/pkgs/development/compilers/swift/patches/0004-build-presets-linux-plumb-extra-cmake-options.patch
index 5493196303cd..e84c7eb2a08a 100644
--- a/pkgs/development/compilers/swift/patches/0004-build-presets-linux-plumb-extra-cmake-options.patch
+++ b/pkgs/development/compilers/swift/patches/0004-build-presets-linux-plumb-extra-cmake-options.patch
@@ -11,7 +11,7 @@ diff --git a/utils/build-presets.ini b/utils/build-presets.ini
 index 1739e91dc2..0608fed9c1 100644
 --- a/utils/build-presets.ini
 +++ b/utils/build-presets.ini
-@@ -708,6 +708,8 @@ install-destdir=%(install_destdir)s
+@@ -740,6 +740,8 @@ install-destdir=%(install_destdir)s
  # Path to the .tar.gz package we would create.
  installable-package=%(installable_package)s
  
diff --git a/pkgs/development/compilers/swift/patches/build-script-pax.patch b/pkgs/development/compilers/swift/patches/build-script-pax.patch
index fa2ccdf9d5c6..1f47bf8ee045 100644
--- a/pkgs/development/compilers/swift/patches/build-script-pax.patch
+++ b/pkgs/development/compilers/swift/patches/build-script-pax.patch
@@ -1,6 +1,6 @@
 --- swift/utils/build-script-impl	2017-01-23 12:47:20.401326309 -0600
 +++ swift-pax/utils/build-script-impl	2017-01-23 13:24:10.339366996 -0600
-@@ -1823,6 +1823,17 @@ function set_lldb_xcodebuild_options() {
+@@ -1837,6 +1837,17 @@ function set_lldb_xcodebuild_options() {
      fi
  }
  
@@ -18,7 +18,7 @@
  #
  # Configure and build each product
  #
-@@ -2624,6 +2634,12 @@ for host in "${ALL_HOSTS[@]}"; do
+@@ -2735,6 +2746,12 @@ for host in "${ALL_HOSTS[@]}"; do
              fi
  
              call "${CMAKE_BUILD[@]}" "${build_dir}" $(cmake_config_opt ${product}) -- "${BUILD_ARGS[@]}" ${build_targets[@]}
diff --git a/pkgs/development/compilers/swift/patches/glibc-arch-headers.patch b/pkgs/development/compilers/swift/patches/glibc-arch-headers.patch
new file mode 100644
index 000000000000..650e1a2429d4
--- /dev/null
+++ b/pkgs/development/compilers/swift/patches/glibc-arch-headers.patch
@@ -0,0 +1,13 @@
+The Nix glibc headers do not use include/x86_64-linux-gnu subdirectories.
+
+--- swift/stdlib/public/Platform/CMakeLists.txt	2018-09-30 17:51:51.581766303 +0200
++++ swift/stdlib/public/Platform/CMakeLists.txt	2018-09-30 18:40:04.118956708 +0200
+@@ -65,7 +65,7 @@
+     endif()
+ 
+     set(GLIBC_INCLUDE_PATH "${GLIBC_SYSROOT_RELATIVE_INCLUDE_PATH}")
+-    set(GLIBC_ARCH_INCLUDE_PATH "${GLIBC_SYSROOT_RELATIVE_ARCH_INCLUDE_PATH}")
++    set(GLIBC_ARCH_INCLUDE_PATH "${GLIBC_SYSROOT_RELATIVE_INCLUDE_PATH}")
+ 
+     if(NOT "${SWIFT_SDK_${sdk}_ARCH_${arch}_PATH}" STREQUAL "/")
+       set(GLIBC_INCLUDE_PATH "${SWIFT_SDK_${sdk}_ARCH_${arch}_PATH}${GLIBC_INCLUDE_PATH}")
diff --git a/pkgs/development/compilers/swift/patches/llvm-include-dirs.patch b/pkgs/development/compilers/swift/patches/llvm-include-dirs.patch
new file mode 100644
index 000000000000..9523943c4801
--- /dev/null
+++ b/pkgs/development/compilers/swift/patches/llvm-include-dirs.patch
@@ -0,0 +1,13 @@
+Only use the Nix include dirs when no sysroot is configured.
+
+--- clang/lib/Driver/ToolChains/Linux.cpp	2018-10-05 18:01:15.731109551 +0200
++++ clang/lib/Driver/ToolChains/Linux.cpp	2018-10-05 18:00:27.959509924 +0200
+@@ -565,7 +565,7 @@
+ 
+   // Check for configure-time C include directories.
+   StringRef CIncludeDirs(C_INCLUDE_DIRS);
+-  if (CIncludeDirs != "") {
++  if (CIncludeDirs != "" && (SysRoot.empty() || SysRoot == "/")) {
+     SmallVector<StringRef, 5> dirs;
+     CIncludeDirs.split(dirs, ":");
+     for (StringRef dir : dirs) {
diff --git a/pkgs/development/compilers/swift/purity.patch b/pkgs/development/compilers/swift/purity.patch
index b30d0d0b5d5b..d10e407260a5 100644
--- a/pkgs/development/compilers/swift/purity.patch
+++ b/pkgs/development/compilers/swift/purity.patch
@@ -11,7 +11,7 @@ diff --git a/lib/Driver/ToolChains/Gnu.cpp b/lib/Driver/ToolChains/Gnu.cpp
 index fe3c0191bb..c6a482bece 100644
 --- a/lib/Driver/ToolChains/Gnu.cpp
 +++ b/lib/Driver/ToolChains/Gnu.cpp
-@@ -494,13 +494,6 @@ void tools::gnutools::Linker::ConstructJob(Compilation &C, const JobAction &JA,
+@@ -398,13 +398,6 @@ void tools::gnutools::Linker::ConstructJob(Compilation &C, const JobAction &JA,
    if (!Args.hasArg(options::OPT_static)) {
      if (Args.hasArg(options::OPT_rdynamic))
        CmdArgs.push_back("-export-dynamic");

From 99b4045826f77933a9d7a546fadd29647de71546 Mon Sep 17 00:00:00 2001
From: Yurii Izorkin <Izorkin@gmail.com>
Date: Thu, 1 Nov 2018 20:22:43 +0300
Subject: [PATCH 0258/1129] percona-toolkit: 3.0.11 -> 3.0.12 (#47963)

* percona-toolkit: 3.0.11 -> 3.0.12

License is GPL2 (or Artistic License) but not LGPL2
https://www.percona.com/doc/percona-toolkit/LATEST/copyright_license_and_warranty.html
---
 pkgs/top-level/perl-packages.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/top-level/perl-packages.nix b/pkgs/top-level/perl-packages.nix
index 374644587913..e94f8945d399 100644
--- a/pkgs/top-level/perl-packages.nix
+++ b/pkgs/top-level/perl-packages.nix
@@ -12103,19 +12103,19 @@ let
   };
 
   PerconaToolkit = buildPerlPackage rec {
-    name = "Percona-Toolkit-3.0.11";
+    name = "Percona-Toolkit-3.0.12";
     src = fetchFromGitHub {
       owner = "percona";
       repo = "percona-toolkit";
-      rev = "6e5c5c5e6db0a32c6951c8f798c4547539cdab87";
-      sha256 = "18wxvp7psqrx0zdvg47azrals572hv9fx1s3p0q65s87lnk3q63l";
+      rev = "3.0.12";
+      sha256 = "0xk4h4dzl80kf97lbx0nznx9ajrb6kkg7k3iwca3rj6f3rqggv9y";
     };
     outputs = [ "out" ];
     buildInputs = [ DBDmysql DBI IOSocketSSL TermReadKey TimeHiRes ];
     meta = {
       description = ''Collection of advanced command-line tools to perform a variety of MySQL and system tasks.'';
       homepage = http://www.percona.com/software/percona-toolkit;
-      license = with stdenv.lib.licenses; [ lgpl2 ];
+      license = with stdenv.lib.licenses; [ gpl2 ];
       platforms = stdenv.lib.platforms.linux;
       maintainers = with stdenv.lib.maintainers; [ izorkin ];
     };

From bbe1da7aa9fc82a1a138330d51f76b16879358a4 Mon Sep 17 00:00:00 2001
From: Michael Fellinger <michael.fellinger@xing.com>
Date: Wed, 31 Oct 2018 21:54:50 +0100
Subject: [PATCH 0259/1129] kexpand: init at 2017-05-12

---
 pkgs/development/tools/kexpand/default.nix | 18 +++++++
 pkgs/development/tools/kexpand/deps.nix    | 63 ++++++++++++++++++++++
 pkgs/top-level/all-packages.nix            |  2 +
 3 files changed, 83 insertions(+)
 create mode 100644 pkgs/development/tools/kexpand/default.nix
 create mode 100644 pkgs/development/tools/kexpand/deps.nix

diff --git a/pkgs/development/tools/kexpand/default.nix b/pkgs/development/tools/kexpand/default.nix
new file mode 100644
index 000000000000..a82c21b72e9e
--- /dev/null
+++ b/pkgs/development/tools/kexpand/default.nix
@@ -0,0 +1,18 @@
+{ buildGoPackage, fetchFromGitHub }:
+
+buildGoPackage rec {
+  name = "kexpand-unstable-2017-05-12";
+
+  goPackagePath = "github.com/kopeio/kexpand";
+
+  subPackages = [ "." ];
+
+  src = fetchFromGitHub {
+    owner = "kopeio";
+    repo = "kexpand";
+    rev = "c508a43a4e84410dfd30827603e902148c5c1f3c";
+    sha256 = "0946h74lsqnr1106j7i2w2a5jg2bbk831d7prlws4bb2kigfm38p";
+  };
+
+  goDeps = ./deps.nix;
+}
diff --git a/pkgs/development/tools/kexpand/deps.nix b/pkgs/development/tools/kexpand/deps.nix
new file mode 100644
index 000000000000..c049d9683cce
--- /dev/null
+++ b/pkgs/development/tools/kexpand/deps.nix
@@ -0,0 +1,63 @@
+# file generated from go.mod using vgo2nix (https://github.com/adisbladis/vgo2nix)
+[
+
+  {
+    goPackagePath = "github.com/ghodss/yaml";
+    fetch = {
+      type = "git";
+      url = "https://github.com/ghodss/yaml";
+      rev = "v1.0.0";
+      sha256 = "0skwmimpy7hlh7pva2slpcplnm912rp3igs98xnqmn859kwa5v8g";
+    };
+  }
+
+  {
+    goPackagePath = "github.com/golang/glog";
+    fetch = {
+      type = "git";
+      url = "https://github.com/golang/glog";
+      rev = "23def4e6c14b";
+      sha256 = "0jb2834rw5sykfr937fxi8hxi2zy80sj2bdn9b3jb4b26ksqng30";
+    };
+  }
+
+  {
+    goPackagePath = "github.com/spf13/cobra";
+    fetch = {
+      type = "git";
+      url = "https://github.com/spf13/cobra";
+      rev = "v0.0.3";
+      sha256 = "1q1nsx05svyv9fv3fy6xv6gs9ffimkyzsfm49flvl3wnvf1ncrkd";
+    };
+  }
+
+  {
+    goPackagePath = "github.com/spf13/pflag";
+    fetch = {
+      type = "git";
+      url = "https://github.com/spf13/pflag";
+      rev = "v1.0.3";
+      sha256 = "1cj3cjm7d3zk0mf1xdybh0jywkbbw7a6yr3y22x9sis31scprswd";
+    };
+  }
+
+  {
+    goPackagePath = "gopkg.in/check.v1";
+    fetch = {
+      type = "git";
+      url = "https://gopkg.in/check.v1";
+      rev = "20d25e280405";
+      sha256 = "0k1m83ji9l1a7ng8a7v40psbymxasmssbrrhpdv2wl4rhs0nc3np";
+    };
+  }
+
+  {
+    goPackagePath = "gopkg.in/yaml.v2";
+    fetch = {
+      type = "git";
+      url = "https://gopkg.in/yaml.v2";
+      rev = "v2.2.1";
+      sha256 = "0dwjrs2lp2gdlscs7bsrmyc5yf6mm4fvgw71bzr9mv2qrd2q73s1";
+    };
+  }
+]
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index dba68f348d24..6e98bddeb50a 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -3550,6 +3550,8 @@ with pkgs;
 
   kexectools = callPackage ../os-specific/linux/kexectools { };
 
+  kexpand = callPackage ../development/tools/kexpand { };
+
   keybase = callPackage ../tools/security/keybase {
     # Reasoning for the inherited apple_sdk.frameworks:
     # 1. specific compiler errors about: AVFoundation, AudioToolbox, MediaToolbox

From 89ede978a0614fd7215e0aa2c483df142cc79af9 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Domen=20Ko=C5=BEar?= <domen@dev.si>
Date: Thu, 1 Nov 2018 17:49:52 +0000
Subject: [PATCH 0260/1129] chromium: use jumbo builds to speedup compilation

On Hetzner machine with 1 core: 4h40m
On Hetzner machine with 8 cores: 1h20m
---
 pkgs/applications/networking/browsers/chromium/common.nix | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/pkgs/applications/networking/browsers/chromium/common.nix b/pkgs/applications/networking/browsers/chromium/common.nix
index a011d0a892e9..661985086061 100644
--- a/pkgs/applications/networking/browsers/chromium/common.nix
+++ b/pkgs/applications/networking/browsers/chromium/common.nix
@@ -222,6 +222,8 @@ let
       use_gold = true;
       gold_path = "${stdenv.cc}/bin";
       is_debug = false;
+      # at least 2X compilation speedup
+      use_jumbo_build = true;
 
       proprietary_codecs = false;
       use_sysroot = false;

From ee09650a4c6a4c40adb0ec0b003634a5a0cfac48 Mon Sep 17 00:00:00 2001
From: Renaud <c0bw3b@users.noreply.github.com>
Date: Thu, 1 Nov 2018 19:58:51 +0100
Subject: [PATCH 0261/1129] flyway: 5.1.4 -> 5.2.1

Distribute only the community edition JARs which are the only ones under Apache 2.0 license
This also reduce closure size
---
 pkgs/development/tools/flyway/default.nix | 11 ++++++-----
 1 file changed, 6 insertions(+), 5 deletions(-)

diff --git a/pkgs/development/tools/flyway/default.nix b/pkgs/development/tools/flyway/default.nix
index 70f6d8021ff8..7386dc0eeeba 100644
--- a/pkgs/development/tools/flyway/default.nix
+++ b/pkgs/development/tools/flyway/default.nix
@@ -1,22 +1,23 @@
 { stdenv, fetchurl, jre_headless, makeWrapper }:
   let
-    version = "5.1.4";
+    version = "5.2.1";
   in
     stdenv.mkDerivation {
       name = "flyway-${version}";
       src = fetchurl {
-        url = "https://repo1.maven.org/maven2/org/flywaydb/flyway-commandline/5.1.4/flyway-commandline-${version}.tar.gz";
-        sha256 = "1raz125k55v6xa8gp6ylcjxz77r5364xqp9di46rayx3z2282f7q";
+        url = "https://repo1.maven.org/maven2/org/flywaydb/flyway-commandline/${version}/flyway-commandline-${version}.tar.gz";
+        sha256 = "0lm536qc8pqj4s21dd47gi99nwwflk17gqzfwaflghw3fnhn7i1s";
       };
       buildInputs = [ makeWrapper ];
       dontBuild = true;
       dontStrip = true;
       installPhase = ''
         mkdir -p $out/bin $out/share/flyway
-        cp -r sql jars lib drivers $out/share/flyway
+        cp -r sql jars drivers conf $out/share/flyway
+        cp -r lib/community $out/share/flyway/lib
         makeWrapper "${jre_headless}/bin/java" $out/bin/flyway \
           --add-flags "-Djava.security.egd=file:/dev/../dev/urandom" \
-          --add-flags "-cp '$out/share/flyway/lib/*:$out/share/flyway/drivers/*'" \
+          --add-flags "-classpath '$out/share/flyway/lib/*:$out/share/flyway/drivers/*'" \
           --add-flags "org.flywaydb.commandline.Main"
       '';
       meta = with stdenv.lib; {

From 55905659a91ce39bd2ff7e056ae6fecb596ad168 Mon Sep 17 00:00:00 2001
From: Bart Brouns <bart@magnetophon.nl>
Date: Thu, 1 Nov 2018 19:59:34 +0100
Subject: [PATCH 0262/1129] avldrums-lv2: init at 0.3.0 (#48896)

---
 .../audio/avldrums-lv2/default.nix            | 30 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 32 insertions(+)
 create mode 100644 pkgs/applications/audio/avldrums-lv2/default.nix

diff --git a/pkgs/applications/audio/avldrums-lv2/default.nix b/pkgs/applications/audio/avldrums-lv2/default.nix
new file mode 100644
index 000000000000..40fb0c6d9e15
--- /dev/null
+++ b/pkgs/applications/audio/avldrums-lv2/default.nix
@@ -0,0 +1,30 @@
+{ stdenv, fetchFromGitHub, pkgconfig, pango, cairo, libGLU, lv2 }:
+
+stdenv.mkDerivation rec {
+  name = "${pname}-${version}";
+  pname = "avldrums.lv2";
+  version = "0.3.0";
+
+  src = fetchFromGitHub {
+    owner = "x42";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "0w51gdshq2i5bix2x5l3g3gnycy84nlzf5sj0jkrw0zrnbk6ghwg";
+    fetchSubmodules = true;
+  };
+
+  installFlags = "PREFIX=$(out)";
+
+  nativeBuildInputs = [ pkgconfig ];
+  buildInputs = [
+    pango cairo libGLU lv2
+  ];
+
+  meta = with stdenv.lib; {
+    description = "Dedicated AVLDrumkits LV2 Plugin";
+    homepage    = http://x42-plugins.com/x42/x42-avldrums;
+    license     = licenses.gpl2;
+    maintainers = [ maintainers.magnetophon ];
+    platforms   = [ "i686-linux" "x86_64-linux" ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 246f40efdacd..a1dc1d1958c3 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -577,6 +577,8 @@ with pkgs;
 
   avfs = callPackage ../tools/filesystems/avfs { };
 
+  avldrums-lv2 = callPackage ../applications/audio/avldrums-lv2 { };
+
   aws-iam-authenticator = callPackage ../tools/security/aws-iam-authenticator {};
 
   awscli = callPackage ../tools/admin/awscli { };

From 5a5ef43b40210d8f93119656dd9fdabe9dfca3f7 Mon Sep 17 00:00:00 2001
From: Bart Brouns <bart@magnetophon.nl>
Date: Thu, 1 Nov 2018 20:00:24 +0100
Subject: [PATCH 0263/1129] HybridReverb2: init at 2.1.1 (#49080)

---
 .../audio/hybridreverb2/default.nix           | 49 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 2 files changed, 51 insertions(+)
 create mode 100644 pkgs/applications/audio/hybridreverb2/default.nix

diff --git a/pkgs/applications/audio/hybridreverb2/default.nix b/pkgs/applications/audio/hybridreverb2/default.nix
new file mode 100644
index 000000000000..19aac1bd1e95
--- /dev/null
+++ b/pkgs/applications/audio/hybridreverb2/default.nix
@@ -0,0 +1,49 @@
+{ stdenv, fetchFromGitHub, fetchzip, cmake, pkgconfig, lv2, alsaLib, libjack2,
+  freetype, libX11, gtk3, pcre, libpthreadstubs, libXdmcp, libxkbcommon,
+  epoxy, at-spi2-core, dbus, curl, fftwFloat }:
+
+let
+  pname = "HybridReverb2";
+  version = "2.1.1";
+  owner = "jpcima";
+  DBversion = "1.0.0";
+in
+
+stdenv.mkDerivation rec {
+  name = "${pname}-${version}";
+
+  impulseDB = fetchzip {
+    url = "https://github.com/${owner}/${pname}-impulse-response-database/archive/v${DBversion}.zip";
+    sha256 = "1hlfxbbkahm1k2sk3c3n2mjaz7k80ky3r55xil8nfbvbv0qan89z";
+  };
+
+  src = fetchFromGitHub {
+    inherit owner;
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "15mba9qvlis0qrklr50wp3jdysvmk33m7pvclp0k1is9pirj97cb";
+    fetchSubmodules = true;
+  };
+
+  nativeBuildInputs = [ pkgconfig cmake ];
+  buildInputs = [ lv2 alsaLib libjack2 freetype libX11 gtk3 pcre
+    libpthreadstubs libXdmcp libxkbcommon epoxy at-spi2-core dbus curl fftwFloat ];
+
+  cmakeFlags = [
+    "-DHybridReverb2_AdvancedJackStandalone=ON"
+    "-DHybridReverb2_UseLocalDatabase=ON"
+  ];
+
+  postInstall = ''
+    mkdir -p $out/share/${pname}/
+    cp  -r ${impulseDB}/* $out/share/${pname}/
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = http://www2.ika.ruhr-uni-bochum.de/HybridReverb2;
+    description = "Reverb effect using hybrid impulse convolution";
+    license = licenses.gpl2Plus;
+    maintainers = [ maintainers.magnetophon ];
+    platforms = platforms.linux;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index a1dc1d1958c3..ebc74e1555c3 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -3296,6 +3296,8 @@ with pkgs;
 
   hwinfo = callPackage ../tools/system/hwinfo { };
 
+  hybridreverb2 = callPackage ../applications/audio/hybridreverb2 { };
+
   hylafaxplus = callPackage ../servers/hylafaxplus { };
 
   i2c-tools = callPackage ../os-specific/linux/i2c-tools { };

From ad49300678c27b077c7b9738a924b450cd81737c Mon Sep 17 00:00:00 2001
From: Sirio Balmelli <sirio@b-ad.ch>
Date: Thu, 1 Nov 2018 20:01:55 +0100
Subject: [PATCH 0264/1129] add vim plugin vim-scripts/autoload_cscope.vim

---
 pkgs/misc/vim-plugins/generated.nix    | 10 ++++++++++
 pkgs/misc/vim-plugins/vim-plugin-names |  1 +
 2 files changed, 11 insertions(+)

diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix
index 4c6c577ce6d1..36a2bb925083 100644
--- a/pkgs/misc/vim-plugins/generated.nix
+++ b/pkgs/misc/vim-plugins/generated.nix
@@ -92,6 +92,16 @@
     };
   };
 
+  autoload_cscope-vim = buildVimPluginFrom2Nix {
+    name = "autoload_cscope-vim-2011-01-28";
+    src = fetchFromGitHub {
+      owner = "vim-scripts";
+      repo = "autoload_cscope.vim";
+      rev = "26f428f400d96d25a9d633e6314f6e1760923db1";
+      sha256 = "150h6k4nd1msa21c0zxl68nwwq3qdmqi0d8h4as98rrz0b0lghn7";
+    };
+  };
+
   awesome-vim-colorschemes = buildVimPluginFrom2Nix {
     name = "awesome-vim-colorschemes-2018-01-20";
     src = fetchFromGitHub {
diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names
index a503f0bedadc..1587f69b55e6 100644
--- a/pkgs/misc/vim-plugins/vim-plugin-names
+++ b/pkgs/misc/vim-plugins/vim-plugin-names
@@ -309,6 +309,7 @@ vim-pandoc/vim-pandoc-syntax
 vim-ruby/vim-ruby
 vim-scripts/align
 vim-scripts/argtextobj.vim
+vim-scripts/autoload_cscope.vim
 vim-scripts/a.vim
 vim-scripts/bats.vim
 vim-scripts/changeColorScheme.vim

From db72b653387a2741cf227da9c0933459815c29f4 Mon Sep 17 00:00:00 2001
From: Renaud <c0bw3b@users.noreply.github.com>
Date: Thu, 1 Nov 2018 20:07:47 +0100
Subject: [PATCH 0265/1129] pmtools: remove and alias (#49596)

These are the old tools that later became part of ACPICA.
It is obsolete and we already have newer acpica-tools.
Alias to acpica-tools for out of tree backward-compat
---
 pkgs/os-specific/linux/pmtools/default.nix | 23 ----------------------
 pkgs/top-level/aliases.nix                 |  1 +
 pkgs/top-level/all-packages.nix            |  2 --
 3 files changed, 1 insertion(+), 25 deletions(-)
 delete mode 100644 pkgs/os-specific/linux/pmtools/default.nix

diff --git a/pkgs/os-specific/linux/pmtools/default.nix b/pkgs/os-specific/linux/pmtools/default.nix
deleted file mode 100644
index a284924f0058..000000000000
--- a/pkgs/os-specific/linux/pmtools/default.nix
+++ /dev/null
@@ -1,23 +0,0 @@
-{ stdenv, fetchurl }:
-
-stdenv.mkDerivation rec {
-  name = "pmtools-20071116";
-
-  src = fetchurl {
-    url = "http://www.lesswatts.org/patches/linux_acpi/${name}.tar.gz";
-    sha256 = "91751774976e39f6237efd0326eb35196a9346220b92ad35894a33283e872748";
-  };
-
-  installPhase = ''
-    mkdir -p $out/bin $out/share/pmtools
-    cp acpidump/acpidump acpixtract/acpixtract madt/madt $out/bin/
-    cp README $out/share/pmtools/
-  '';
-
-  meta = {
-    homepage = http://www.lesswatts.org/projects/acpi/utilities.php;
-    description = "Linux ACPI utilities";
-    license = stdenv.lib.licenses.gpl2;
-    platforms = stdenv.lib.platforms.linux;
-  };
-}
diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix
index c0d322b89d88..8f5e866ede54 100644
--- a/pkgs/top-level/aliases.nix
+++ b/pkgs/top-level/aliases.nix
@@ -224,6 +224,7 @@ mapAliases ({
   pidginwindowmerge = pidgin-window-merge; # added 2018-01-08
   piwik = matomo; # added 2018-01-16
   pltScheme = racket; # just to be sure
+  pmtools = acpica-tools; # added 2018-11-01
   poppler_qt5 = libsForQt5.poppler;  # added 2015-12-19
   postgresql93 = postgresql_9_3;
   postgresql94 = postgresql_9_4;
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index ebc74e1555c3..f4055b0d4d25 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -14808,8 +14808,6 @@ with pkgs;
 
   pmutils = callPackage ../os-specific/linux/pm-utils { };
 
-  pmtools = callPackage ../os-specific/linux/pmtools { };
-
   policycoreutils = callPackage ../os-specific/linux/policycoreutils { };
 
   semodule-utils = callPackage ../os-specific/linux/semodule-utils { };

From c8e2b666a7d53173feaa728d85bbb868c2ea4aa2 Mon Sep 17 00:00:00 2001
From: Patrick Hilhorst <git@hilhorst.be>
Date: Thu, 1 Nov 2018 20:09:24 +0100
Subject: [PATCH 0266/1129] atom, atom-beta: 1.32.0 -> 1.32.1, 1.33.0-beta0 ->
 1.33.0-beta1 (#49590)

---
 pkgs/applications/editors/atom/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/editors/atom/default.nix b/pkgs/applications/editors/atom/default.nix
index a6525804ee0b..834c6bedf3c0 100644
--- a/pkgs/applications/editors/atom/default.nix
+++ b/pkgs/applications/editors/atom/default.nix
@@ -3,14 +3,14 @@
 let
   versions = {
     atom = {
-      version = "1.32.0";
-      sha256 = "0dha8zi4gshxj993ns7ybi7q86pfqwzsasrk3a7b5xrdqbrcm5md";
+      version = "1.32.1";
+      sha256 = "1x22jbhvagqw9mvq0v7z4z09qp727vl0rkyvaxn98xnj9gvcfkq9";
     };
 
     atom-beta = {
       version = "1.33.0";
-      beta = 0;
-      sha256 = "1x4s12zvfd2gjy7mimndbhs6x9k37jq4dyy6r1mzhwfysix74val";
+      beta = 1;
+      sha256 = "0sf98apmb57msgr5p1xly0mffzn2s808nsfsmbisk4qqmm9fv2m3";
     };
   };
 

From cc41aefe4485dea399930b8d173c26e438cb5e22 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Vladim=C3=ADr=20=C4=8Cun=C3=A1t?= <vcunat@gmail.com>
Date: Thu, 1 Nov 2018 20:13:38 +0100
Subject: [PATCH 0267/1129] chromium tests: inherit timeout from the package

/cc #49442.  It should decrease the waste of resources due to abortions.
---
 nixos/tests/chromium.nix | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/nixos/tests/chromium.nix b/nixos/tests/chromium.nix
index c341e83961a8..fcc55a59a216 100644
--- a/nixos/tests/chromium.nix
+++ b/nixos/tests/chromium.nix
@@ -12,8 +12,10 @@ with pkgs.lib;
 
 mapAttrs (channel: chromiumPkg: makeTest rec {
   name = "chromium-${channel}";
-  meta = with pkgs.stdenv.lib.maintainers; {
-    maintainers = [ aszlig ];
+  meta = {
+    maintainers = with maintainers; [ aszlig ];
+    # https://github.com/NixOS/hydra/issues/591#issuecomment-435125621
+    inherit (chromiumPkg.meta) timeout;
   };
 
   enableOCR = true;

From 79c713bc1498ccceed9f8d2fc0b8d29b1b45a209 Mon Sep 17 00:00:00 2001
From: John Ericson <John.Ericson@Obsidian.Systems>
Date: Thu, 6 Sep 2018 14:28:44 -0400
Subject: [PATCH 0268/1129] release-lib: Cache cross nixpkgs evals too

This will help with release-cross.nix eval time. It also allowed me to
share code between the cross and native helpers.
---
 pkgs/top-level/release-cross.nix |  6 +-
 pkgs/top-level/release-lib.nix   | 94 ++++++++++++++++++++------------
 2 files changed, 62 insertions(+), 38 deletions(-)

diff --git a/pkgs/top-level/release-cross.nix b/pkgs/top-level/release-cross.nix
index 0d15d817a66c..ee69dd5a43c5 100644
--- a/pkgs/top-level/release-cross.nix
+++ b/pkgs/top-level/release-cross.nix
@@ -81,11 +81,11 @@ in
     # good idea lest there be some irrelevant pass-through debug attrs that
     # cause false negatives.
     testEqualOne = path: system: let
-      f = path: attrs: builtins.toString (lib.getAttrFromPath path (allPackages attrs));
+      f = path: crossSystem: system: builtins.toString (lib.getAttrFromPath path (pkgsForCross crossSystem system));
     in assertTrue (
-        f path { inherit system; }
+        f path null system
         ==
-        f (["buildPackages"] ++ path) { inherit system crossSystem; }
+        f (["buildPackages"] ++ path) crossSystem system
       );
 
     testEqual = path: systems: forMatchingSystems systems (testEqualOne path);
diff --git a/pkgs/top-level/release-lib.nix b/pkgs/top-level/release-lib.nix
index 623c9d9cb000..2b72de7c7ef5 100644
--- a/pkgs/top-level/release-lib.nix
+++ b/pkgs/top-level/release-lib.nix
@@ -11,8 +11,6 @@ in with lib;
 
 rec {
 
-  allPackages = args: packageSet (args // nixpkgsArgs);
-
   pkgs = packageSet (lib.recursiveUpdate { system = "x86_64-linux"; config.allowUnsupportedSystem = true; } nixpkgsArgs);
   inherit lib;
 
@@ -23,29 +21,53 @@ rec {
   /* !!! Hack: poor man's memoisation function.  Necessary to prevent
      Nixpkgs from being evaluated again and again for every
      job/platform pair. */
-  pkgsFor = system:
-    if system == "x86_64-linux" then pkgs_x86_64_linux
-    else if system == "i686-linux" then pkgs_i686_linux
-    else if system == "aarch64-linux" then pkgs_aarch64_linux
-    else if system == "armv6l-linux" then pkgs_armv6l_linux
-    else if system == "armv7l-linux" then pkgs_armv7l_linux
-    else if system == "x86_64-darwin" then pkgs_x86_64_darwin
-    else if system == "x86_64-freebsd" then pkgs_x86_64_freebsd
-    else if system == "i686-freebsd" then pkgs_i686_freebsd
-    else if system == "i686-cygwin" then pkgs_i686_cygwin
-    else if system == "x86_64-cygwin" then pkgs_x86_64_cygwin
-    else abort "unsupported system type: ${system}";
+  mkPkgsFor = crossSystem: let
+    packageSet' = args: packageSet (args // { inherit crossSystem; } // nixpkgsArgs);
 
-  pkgs_x86_64_linux = allPackages { system = "x86_64-linux"; };
-  pkgs_i686_linux = allPackages { system = "i686-linux"; };
-  pkgs_aarch64_linux = allPackages { system = "aarch64-linux"; };
-  pkgs_armv6l_linux = allPackages { system = "armv6l-linux"; };
-  pkgs_armv7l_linux = allPackages { system = "armv7l-linux"; };
-  pkgs_x86_64_darwin = allPackages { system = "x86_64-darwin"; };
-  pkgs_x86_64_freebsd = allPackages { system = "x86_64-freebsd"; };
-  pkgs_i686_freebsd = allPackages { system = "i686-freebsd"; };
-  pkgs_i686_cygwin = allPackages { system = "i686-cygwin"; };
-  pkgs_x86_64_cygwin = allPackages { system = "x86_64-cygwin"; };
+    pkgs_x86_64_linux = packageSet' { system = "x86_64-linux"; };
+    pkgs_i686_linux = packageSet' { system = "i686-linux"; };
+    pkgs_aarch64_linux = packageSet' { system = "aarch64-linux"; };
+    pkgs_armv6l_linux = packageSet' { system = "armv6l-linux"; };
+    pkgs_armv7l_linux = packageSet' { system = "armv7l-linux"; };
+    pkgs_x86_64_darwin = packageSet' { system = "x86_64-darwin"; };
+    pkgs_x86_64_freebsd = packageSet' { system = "x86_64-freebsd"; };
+    pkgs_i686_freebsd = packageSet' { system = "i686-freebsd"; };
+    pkgs_i686_cygwin = packageSet' { system = "i686-cygwin"; };
+    pkgs_x86_64_cygwin = packageSet' { system = "x86_64-cygwin"; };
+
+    in system:
+      if system == "x86_64-linux" then pkgs_x86_64_linux
+      else if system == "i686-linux" then pkgs_i686_linux
+      else if system == "aarch64-linux" then pkgs_aarch64_linux
+      else if system == "armv6l-linux" then pkgs_armv6l_linux
+      else if system == "armv7l-linux" then pkgs_armv7l_linux
+      else if system == "x86_64-darwin" then pkgs_x86_64_darwin
+      else if system == "x86_64-freebsd" then pkgs_x86_64_freebsd
+      else if system == "i686-freebsd" then pkgs_i686_freebsd
+      else if system == "i686-cygwin" then pkgs_i686_cygwin
+      else if system == "x86_64-cygwin" then pkgs_x86_64_cygwin
+      else abort "unsupported system type: ${system}";
+
+  inherit (pkgsForCross null) pkgsFor;
+
+
+  # More poor man's memoisation
+  pkgsForCross = let
+    examplesByConfig = lib.flip lib.mapAttrs'
+      (builtins.removeAttrs lib.systems.examples [ "riscv" ])
+      (_: crossSystem: nameValuePair crossSystem.config {
+        inherit crossSystem;
+        pkgsFor = mkPkgsFor crossSystem;
+      });
+    native = mkPkgsFor null;
+  in crossSystem: let
+    errorMsg = "unsupported crossSystem: ${toString crossSystem.config or "<something without config>"}";
+    candidate = examplesByConfig.${crossSystem.config} or (throw errorMsg);
+  in if crossSystem == null
+      then native
+    else if lib.matchAttrs crossSystem candidate.crossSystem
+      then candidate.pkgsFor
+    else throw errorMsg;
 
 
   # Given a list of 'meta.platforms'-style patterns, return the sublist of
@@ -90,30 +112,32 @@ rec {
      platform as an argument .  We return an attribute set containing
      a derivation for each supported platform, i.e. ‘{ x86_64-linux =
      f pkgs_x86_64_linux; i686-linux = f pkgs_i686_linux; ... }’. */
-  testOn = metaPatterns: f: forMatchingSystems metaPatterns
-    (system: hydraJob' (f (pkgsFor system)));
+  testOn = testOnCross null;
 
 
   /* Similar to the testOn function, but with an additional
-     'crossSystem' parameter for allPackages, defining the target
+     'crossSystem' parameter for packageSet', defining the target
      platform for cross builds. */
   testOnCross = crossSystem: metaPatterns: f: forMatchingSystems metaPatterns
-    (system: hydraJob' (f (allPackages { inherit system crossSystem; })));
+    (system: hydraJob' (f (pkgsForCross crossSystem system)));
 
 
   /* Given a nested set where the leaf nodes are lists of platforms,
      map each leaf node to `testOn [platforms...] (pkgs:
      pkgs.<attrPath>)'. */
-  mapTestOn = mapAttrsRecursive
-    (path: metaPatterns: testOn metaPatterns (pkgs: getAttrFromPath path pkgs));
+  mapTestOn = _mapTestOnHelper id null;
+
+
+  _mapTestOnHelper = f: crossSystem: mapAttrsRecursive
+    (path: metaPatterns: testOnCross crossSystem metaPatterns
+      (pkgs: f (getAttrFromPath path pkgs)));
 
 
   /* Similar to the testOn function, but with an additional 'crossSystem'
-   * parameter for allPackages, defining the target platform for cross builds,
-   * and triggering the build of the host derivation (cross built - crossDrv). */
-  mapTestOnCross = crossSystem: mapAttrsRecursive
-    (path: metaPatterns: testOnCross crossSystem metaPatterns
-      (pkgs: addMetaAttrs { maintainers = crossMaintainers; } (getAttrFromPath path pkgs)));
+   * parameter for packageSet', defining the target platform for cross builds,
+   * and triggering the build of the host derivation. */
+  mapTestOnCross = _mapTestOnHelper
+    (addMetaAttrs { maintainers = crossMaintainers; });
 
 
   /* Recursively map a (nested) set of derivations to an isomorphic

From cc476f04b8e2f59f6beaeebd80942b587e83a5e5 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 1 Nov 2018 20:47:54 +0100
Subject: [PATCH 0269/1129] imlib: add license + description

---
 pkgs/development/libraries/imlib/default.nix | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/imlib/default.nix b/pkgs/development/libraries/imlib/default.nix
index 2b95742c44c0..eec68015c25b 100644
--- a/pkgs/development/libraries/imlib/default.nix
+++ b/pkgs/development/libraries/imlib/default.nix
@@ -15,7 +15,9 @@ stdenv.mkDerivation {
 
   buildInputs = [libjpeg libXext libX11 xextproto libtiff libungif libpng];
 
-  meta = {
-    platforms = stdenv.lib.platforms.unix;
+  meta = with stdenv.lib; {
+    description = "An image loading and rendering library for X11";
+    platforms = platforms.unix;
+    license = with licenses; [ gpl2 lgpl2 ];
   };
 }

From 24e2bc18b6cd15a5d761048f5d3ec65b61d8fbd0 Mon Sep 17 00:00:00 2001
From: John Ericson <John.Ericson@Obsidian.Systems>
Date: Thu, 1 Nov 2018 16:14:55 -0400
Subject: [PATCH 0270/1129] release-lib: Fallback on uncached rather than error
 for unknown crossSystem

The `ensureUnaffected` the tests purposefully use an absurd crossSystem.
Also sheevaplug and pogoplug share the same config.
---
 pkgs/top-level/release-lib.nix | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/pkgs/top-level/release-lib.nix b/pkgs/top-level/release-lib.nix
index 2b72de7c7ef5..ac11de698b56 100644
--- a/pkgs/top-level/release-lib.nix
+++ b/pkgs/top-level/release-lib.nix
@@ -61,13 +61,12 @@ rec {
       });
     native = mkPkgsFor null;
   in crossSystem: let
-    errorMsg = "unsupported crossSystem: ${toString crossSystem.config or "<something without config>"}";
-    candidate = examplesByConfig.${crossSystem.config} or (throw errorMsg);
+    candidate = examplesByConfig.${crossSystem.config} or null;
   in if crossSystem == null
       then native
-    else if lib.matchAttrs crossSystem candidate.crossSystem
+    else if candidate != null && lib.matchAttrs crossSystem candidate.crossSystem
       then candidate.pkgsFor
-    else throw errorMsg;
+    else mkPkgsFor crossSystem; # uncached fallback
 
 
   # Given a list of 'meta.platforms'-style patterns, return the sublist of

From 984df7ca0605554bd760efc1a53a8b94d8e04c15 Mon Sep 17 00:00:00 2001
From: John Ericson <John.Ericson@Obsidian.Systems>
Date: Thu, 1 Nov 2018 16:16:58 -0400
Subject: [PATCH 0271/1129] top-level: libcCrossChooser: More `or` fallback
 hack

This fixes some eval errors in release-cross.nix
---
 pkgs/top-level/all-packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index abd7db6263d5..a2e93f038c38 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -9536,11 +9536,11 @@ with pkgs;
     # libc is hackily often used from the previous stage. This `or`
     # hack fixes the hack, *sigh*.
     /**/ if name == "glibc" then targetPackages.glibcCross or glibcCross
-    else if name == "bionic" then targetPackages.bionic
-    else if name == "uclibc" then targetPackages.uclibcCross
+    else if name == "bionic" then targetPackages.bionic or bionic
+    else if name == "uclibc" then targetPackages.uclibcCross or uclibcCross
     else if name == "musl" then targetPackages.muslCross or muslCross
     else if name == "msvcrt" then targetPackages.windows.mingw_w64 or windows.mingw_w64
-    else if stdenv.targetPlatform.useiOSPrebuilt then targetPackages.darwin.iosSdkPkgs.libraries
+    else if stdenv.targetPlatform.useiOSPrebuilt then targetPackages.darwin.iosSdkPkgs.libraries or darwin.iosSdkPkgs.libraries
     else if name == "libSystem" then targetPackages.darwin.xcode
     else throw "Unknown libc";
 

From ffaffb36d152d2cba1da51332d4079a96cd5288d Mon Sep 17 00:00:00 2001
From: John Ericson <John.Ericson@Obsidian.Systems>
Date: Thu, 1 Nov 2018 16:18:51 -0400
Subject: [PATCH 0272/1129] linux bootstrap-tools: use `stdenv.*Platform` to
 avoid deprecation warning

---
 pkgs/stdenv/linux/make-bootstrap-tools.nix | 22 +++++++++++-----------
 1 file changed, 11 insertions(+), 11 deletions(-)

diff --git a/pkgs/stdenv/linux/make-bootstrap-tools.nix b/pkgs/stdenv/linux/make-bootstrap-tools.nix
index 4fc9999b538c..3ebb4e634e20 100644
--- a/pkgs/stdenv/linux/make-bootstrap-tools.nix
+++ b/pkgs/stdenv/linux/make-bootstrap-tools.nix
@@ -19,7 +19,7 @@ in with pkgs; rec {
   tarMinimal = gnutar.override { acl = null; };
 
   busyboxMinimal = busybox.override {
-    useMusl = !targetPlatform.isRiscV;
+    useMusl = !stdenv.targetPlatform.isRiscV;
     enableStatic = true;
     enableMinimal = true;
     extraConfig = ''
@@ -44,7 +44,7 @@ in with pkgs; rec {
         set -x
         mkdir -p $out/bin $out/lib $out/libexec
 
-      '' + (if (hostPlatform.libc == "glibc") then ''
+      '' + (if (stdenv.hostPlatform.libc == "glibc") then ''
         # Copy what we need of Glibc.
         cp -d ${libc.out}/lib/ld*.so* $out/lib
         cp -d ${libc.out}/lib/libc*.so* $out/lib
@@ -75,7 +75,7 @@ in with pkgs; rec {
         find $out/include -name .install -exec rm {} \;
         find $out/include -name ..install.cmd -exec rm {} \;
         mv $out/include $out/include-glibc
-    '' else if (hostPlatform.libc == "musl") then ''
+    '' else if (stdenv.hostPlatform.libc == "musl") then ''
         # Copy what we need from musl
         cp ${libc.out}/lib/* $out/lib
         cp -rL ${libc.dev}/include $out
@@ -137,7 +137,7 @@ in with pkgs; rec {
         cp -d ${zlib.out}/lib/libz.so* $out/lib
         cp -d ${libelf}/lib/libelf.so* $out/lib
 
-      '' + lib.optionalString (hostPlatform != buildPlatform) ''
+      '' + lib.optionalString (stdenv.hostPlatform != stdenv.buildPlatform) ''
         # These needed for cross but not native tools because the stdenv
         # GCC has certain things built in statically. See
         # pkgs/stdenv/linux/default.nix for the details.
@@ -199,21 +199,21 @@ in with pkgs; rec {
     bootstrapTools = runCommand "bootstrap-tools.tar.xz" {} "cp ${build}/on-server/bootstrap-tools.tar.xz $out";
   };
 
-  bootstrapTools = if (hostPlatform.libc == "glibc") then
+  bootstrapTools = if (stdenv.hostPlatform.libc == "glibc") then
     import ./bootstrap-tools {
-      inherit (hostPlatform) system;
+      inherit (stdenv.hostPlatform) system;
       inherit bootstrapFiles;
     }
-    else if (hostPlatform.libc == "musl") then
+    else if (stdenv.hostPlatform.libc == "musl") then
     import ./bootstrap-tools-musl {
-      inherit (hostPlatform) system;
+      inherit (stdenv.hostPlatform) system;
       inherit bootstrapFiles;
     }
     else throw "unsupported libc";
 
   test = derivation {
     name = "test-bootstrap-tools";
-    inherit (hostPlatform) system;
+    inherit (stdenv.hostPlatform) system;
     builder = bootstrapFiles.busybox;
     args = [ "ash" "-e" "-c" "eval \"$buildCommand\"" ];
 
@@ -232,12 +232,12 @@ in with pkgs; rec {
       grep --version
       gcc --version
 
-    '' + lib.optionalString (hostPlatform.libc == "glibc") ''
+    '' + lib.optionalString (stdenv.hostPlatform.libc == "glibc") ''
       ldlinux=$(echo ${bootstrapTools}/lib/ld-linux*.so.?)
       export CPP="cpp -idirafter ${bootstrapTools}/include-glibc -B${bootstrapTools}"
       export CC="gcc -idirafter ${bootstrapTools}/include-glibc -B${bootstrapTools} -Wl,-dynamic-linker,$ldlinux -Wl,-rpath,${bootstrapTools}/lib"
       export CXX="g++ -idirafter ${bootstrapTools}/include-glibc -B${bootstrapTools} -Wl,-dynamic-linker,$ldlinux -Wl,-rpath,${bootstrapTools}/lib"
-    '' + lib.optionalString (hostPlatform.libc == "musl") ''
+    '' + lib.optionalString (stdenv.hostPlatform.libc == "musl") ''
       ldmusl=$(echo ${bootstrapTools}/lib/ld-musl*.so.?)
       export CPP="cpp -idirafter ${bootstrapTools}/include-libc -B${bootstrapTools}"
       export CC="gcc -idirafter ${bootstrapTools}/include-libc -B${bootstrapTools} -Wl,-dynamic-linker,$ldmusl -Wl,-rpath,${bootstrapTools}/lib"

From ed0d0eef73dfa50722d70242e9943d76a2d4019a Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Tue, 23 Oct 2018 01:20:47 -0700
Subject: [PATCH 0273/1129] vulkan-tools: 1.1.82.0 -> 1.1.85

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/vulkan-tools/versions
---
 pkgs/tools/graphics/vulkan-tools/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/graphics/vulkan-tools/default.nix b/pkgs/tools/graphics/vulkan-tools/default.nix
index 0d8f5bfe1bc7..43029380f44c 100644
--- a/pkgs/tools/graphics/vulkan-tools/default.nix
+++ b/pkgs/tools/graphics/vulkan-tools/default.nix
@@ -3,13 +3,13 @@
 
 stdenv.mkDerivation rec {
   name = "vulkan-tools-${version}";
-  version = "1.1.82.0";
+  version = "1.1.85";
 
   src = fetchFromGitHub {
     owner = "KhronosGroup";
     repo = "Vulkan-Tools";
     rev = "sdk-${version}";
-    sha256 = "1viaqp1zfdgli3hw674rz8mrfzxpgv12vxcd07czwr8nyb19f2g5";
+    sha256 = "0f4dfr8g0vy7y1hvs6z9lw52kissailzisby4qnz4akv0zz5y5s5";
   };
 
   nativeBuildInputs = [ pkgconfig ];

From f2ed7c7af9f5b2db5e88b78e192b470c47f4c4fd Mon Sep 17 00:00:00 2001
From: John Ericson <John.Ericson@Obsidian.Systems>
Date: Thu, 1 Nov 2018 16:19:17 -0400
Subject: [PATCH 0274/1129] linux bootstrap tools: Use right system for some
 raw derivations

This allows cross builds to work. Evidentallyy this has been done wrong
since I combined the bootstrap tool creation files in
ab651d2c9bab620ebe5e515476fbd70d2c5b0c61. Oops!
---
 pkgs/stdenv/linux/make-bootstrap-tools.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/stdenv/linux/make-bootstrap-tools.nix b/pkgs/stdenv/linux/make-bootstrap-tools.nix
index 3ebb4e634e20..58104e6ce260 100644
--- a/pkgs/stdenv/linux/make-bootstrap-tools.nix
+++ b/pkgs/stdenv/linux/make-bootstrap-tools.nix
@@ -201,19 +201,19 @@ in with pkgs; rec {
 
   bootstrapTools = if (stdenv.hostPlatform.libc == "glibc") then
     import ./bootstrap-tools {
-      inherit (stdenv.hostPlatform) system;
+      inherit (stdenv.buildPlatform) system; # Used to determine where to build
       inherit bootstrapFiles;
     }
     else if (stdenv.hostPlatform.libc == "musl") then
     import ./bootstrap-tools-musl {
-      inherit (stdenv.hostPlatform) system;
+      inherit (stdenv.buildPlatform) system; # Used to determine where to build
       inherit bootstrapFiles;
     }
     else throw "unsupported libc";
 
   test = derivation {
     name = "test-bootstrap-tools";
-    inherit (stdenv.hostPlatform) system;
+    inherit (stdenv.hostPlatform) system; # We cannot "cross test"
     builder = bootstrapFiles.busybox;
     args = [ "ash" "-e" "-c" "eval \"$buildCommand\"" ];
 

From 02a3726a1256fa0e144c302537c8b0876bfee77f Mon Sep 17 00:00:00 2001
From: Dejan Lukan <dejan@proteansec.com>
Date: Mon, 19 Mar 2018 10:26:46 +0100
Subject: [PATCH 0275/1129] bacula: 5.2.13 -> 9.2.1

---
 nixos/modules/services/backup/bacula.nix | 24 ++++++++++++++++++------
 pkgs/tools/backup/bacula/default.nix     | 16 ++++++++++++----
 2 files changed, 30 insertions(+), 10 deletions(-)

diff --git a/nixos/modules/services/backup/bacula.nix b/nixos/modules/services/backup/bacula.nix
index 340b0cf07234..3e1c488d5d83 100644
--- a/nixos/modules/services/backup/bacula.nix
+++ b/nixos/modules/services/backup/bacula.nix
@@ -357,8 +357,12 @@ in {
       description = "Bacula File Daemon";
       wantedBy = [ "multi-user.target" ];
       path = [ pkgs.bacula ];
-      serviceConfig.ExecStart = "${pkgs.bacula}/sbin/bacula-fd -f -u root -g bacula -c ${fd_conf}";
-      serviceConfig.ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID";
+      serviceConfig = {
+        ExecStart = "${pkgs.bacula}/sbin/bacula-fd -f -u root -g bacula -c ${fd_conf}";
+        ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID";
+        LogsDirectory = "bacula";
+        StateDirectory = "bacula";
+      };
     };
 
     systemd.services.bacula-sd = mkIf sd_cfg.enable {
@@ -366,8 +370,12 @@ in {
       description = "Bacula Storage Daemon";
       wantedBy = [ "multi-user.target" ];
       path = [ pkgs.bacula ];
-      serviceConfig.ExecStart = "${pkgs.bacula}/sbin/bacula-sd -f -u bacula -g bacula -c ${sd_conf}";
-      serviceConfig.ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID";
+      serviceConfig = {
+        ExecStart = "${pkgs.bacula}/sbin/bacula-sd -f -u bacula -g bacula -c ${sd_conf}";
+        ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID";
+        LogsDirectory = "bacula";
+        StateDirectory = "bacula";
+      };
     };
 
     services.postgresql.enable = dir_cfg.enable == true;
@@ -377,8 +385,12 @@ in {
       description = "Bacula Director Daemon";
       wantedBy = [ "multi-user.target" ];
       path = [ pkgs.bacula ];
-      serviceConfig.ExecStart = "${pkgs.bacula}/sbin/bacula-dir -f -u bacula -g bacula -c ${dir_conf}";
-      serviceConfig.ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID";
+      serviceConfig = {
+        ExecStart = "${pkgs.bacula}/sbin/bacula-dir -f -u bacula -g bacula -c ${dir_conf}";
+        ExecReload = "${pkgs.coreutils}/bin/kill -HUP $MAINPID";
+        LogsDirectory = "bacula";
+        StateDirectory = "bacula";
+      };
       preStart = ''
         if ! test -e "${libDir}/db-created"; then
             ${pkgs.postgresql}/bin/createuser --no-superuser --no-createdb --no-createrole bacula
diff --git a/pkgs/tools/backup/bacula/default.nix b/pkgs/tools/backup/bacula/default.nix
index 374122814c50..fd8b1e6c8281 100644
--- a/pkgs/tools/backup/bacula/default.nix
+++ b/pkgs/tools/backup/bacula/default.nix
@@ -1,20 +1,28 @@
 { stdenv, fetchurl, sqlite, postgresql, zlib, acl, ncurses, openssl, readline }:
 
 stdenv.mkDerivation rec {
-  name = "bacula-5.2.13";
+  name = "bacula-9.2.1";
 
   src = fetchurl {
     url    = "mirror://sourceforge/bacula/${name}.tar.gz";
-    sha256 = "1n3sc0kd7r0afpyi708y3md0a24rbldnfcdz0syqj600pxcd9gm4";
+    sha256 = "1mv6axdlv246yww9g2ra76hir1km36cv8lk2gal8kv71i64vafmf";
   };
 
   buildInputs = [ postgresql sqlite zlib ncurses openssl readline ]
     # acl relies on attr, which I can't get to build on darwin
     ++ stdenv.lib.optional (!stdenv.isDarwin) acl;
 
-  configureFlags = [ 
+  configureFlags = [
     "--with-sqlite3=${sqlite.dev}"
     "--with-postgresql=${postgresql}"
+    "--with-logdir=/var/log/bacula"
+    "--with-working-dir=/var/lib/bacula"
+    "--mandir=\${out}/share/man"
+  ];
+
+  installFlags = [
+    "logdir=\${out}/logdir"
+    "working_dir=\${out}/workdir"
   ];
 
   postInstall = ''
@@ -26,7 +34,7 @@ stdenv.mkDerivation rec {
     description = "Enterprise ready, Network Backup Tool";
     homepage    = http://bacula.org/;
     license     = licenses.gpl2;
-    maintainers = with maintainers; [ domenkozar lovek323 ];
+    maintainers = with maintainers; [ domenkozar lovek323 eleanor ];
     platforms   = platforms.all;
   };
 }

From ddd761abb31ce9b83f1aacdadd1f3c5822922880 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 1 Nov 2018 21:40:38 +0100
Subject: [PATCH 0276/1129] Revert "virtualgl-lib: fix broken startup script
 (#49185)"

This reverts commit efd3f8b57ff81f263a961c740396b4eb205aa955.
---
 pkgs/tools/X11/virtualgl/lib.nix | 6 ------
 1 file changed, 6 deletions(-)

diff --git a/pkgs/tools/X11/virtualgl/lib.nix b/pkgs/tools/X11/virtualgl/lib.nix
index b3495b189a67..4c911e756330 100644
--- a/pkgs/tools/X11/virtualgl/lib.nix
+++ b/pkgs/tools/X11/virtualgl/lib.nix
@@ -19,12 +19,6 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
-  postPatch = ''
-    # script calls exec, which fails with plain sh
-    substituteInPlace ./server/vglrun.in \
-      --replace '#!/bin/sh' '#!/usr/bin/env bash'
-  '';
-
   meta = with stdenv.lib; {
     homepage = http://www.virtualgl.org/;
     description = "X11 GL rendering in a remote computer with full 3D hw acceleration";

From 5262cf6d0a154464ae3935b37f0880581b20bcf1 Mon Sep 17 00:00:00 2001
From: Sander van der Burg <svanderburg@gmail.com>
Date: Thu, 1 Nov 2018 21:40:50 +0100
Subject: [PATCH 0277/1129] kapacitor: 1.4.0 -> 1.5.1

---
 pkgs/servers/monitoring/kapacitor/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/monitoring/kapacitor/default.nix b/pkgs/servers/monitoring/kapacitor/default.nix
index 0e21069bbb0e..969a58aff85d 100644
--- a/pkgs/servers/monitoring/kapacitor/default.nix
+++ b/pkgs/servers/monitoring/kapacitor/default.nix
@@ -2,7 +2,7 @@
 
 buildGoPackage rec {
   name = "kapacitor-${version}";
-  version = "1.4.0";
+  version = "1.5.1";
 
   goPackagePath = "github.com/influxdata/kapacitor";
 
@@ -10,7 +10,7 @@ buildGoPackage rec {
     owner = "influxdata";
     repo = "kapacitor";
     rev = "v${version}";
-    sha256 = "1qanf7qljzqqkyw2cdazg0ll13q8a3fs3sqydcgfbgpdmf707sj2";
+    sha256 = "17f3my1zmqmcx7qqhdcq8n73l60bsxnnxqgvnw0cnf0xsa5g1yks";
   };
 
   meta = with lib; {

From 24d6c0dbde49ca939751fe6caff0f9af3d0e6723 Mon Sep 17 00:00:00 2001
From: Franz Pletz <fpletz@fnordicwalking.de>
Date: Thu, 1 Nov 2018 21:48:22 +0100
Subject: [PATCH 0278/1129] icecast: 2.4.3 -> 2.4.4

Fixes CVE-2018-18820.
---
 pkgs/servers/icecast/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/icecast/default.nix b/pkgs/servers/icecast/default.nix
index f1bd1a4c9d86..55ec611d6053 100644
--- a/pkgs/servers/icecast/default.nix
+++ b/pkgs/servers/icecast/default.nix
@@ -3,11 +3,11 @@
 , libvorbis, libtheora, speex, libkate, libopus }:
 
 stdenv.mkDerivation rec {
-  name = "icecast-2.4.3";
+  name = "icecast-2.4.4";
 
   src = fetchurl {
     url = "http://downloads.xiph.org/releases/icecast/${name}.tar.gz";
-    sha256 = "14n5vm2xnyn8y7kl46lnnlgv6v5fjykhc57ffdsh0qaxfs6a8p68";
+    sha256 = "0i2d9rhav0x6js2qhjf5iy6j2a7f0d11ail0lfv40hb1kygrgda9";
   };
 
   buildInputs = [ libxml2 libxslt curl libvorbis libtheora speex libkate libopus ];

From 60298d1e087b1278c7a5fe64350b3f5fc31d1570 Mon Sep 17 00:00:00 2001
From: Sander van der Burg <svanderburg@gmail.com>
Date: Thu, 1 Nov 2018 21:52:17 +0100
Subject: [PATCH 0279/1129] nixos/kapacitor: new service

---
 nixos/modules/misc/ids.nix                    |   2 +
 nixos/modules/module-list.nix                 |   1 +
 .../modules/services/monitoring/kapacitor.nix | 154 ++++++++++++++++++
 3 files changed, 157 insertions(+)
 create mode 100644 nixos/modules/services/monitoring/kapacitor.nix

diff --git a/nixos/modules/misc/ids.nix b/nixos/modules/misc/ids.nix
index a32e4fe3f7c8..16737efb1856 100644
--- a/nixos/modules/misc/ids.nix
+++ b/nixos/modules/misc/ids.nix
@@ -332,6 +332,7 @@
       lirc = 305;
       lidarr = 306;
       slurm = 307;
+      kapacitor = 308;
 
       # When adding a uid, make sure it doesn't match an existing gid. And don't use uids above 399!
 
@@ -624,6 +625,7 @@
       lirc = 305;
       lidarr = 306;
       slurm = 307;
+      kapacitor = 308;
 
       # When adding a gid, make sure it doesn't match an existing
       # uid. Users and groups with the same name should have equal
diff --git a/nixos/modules/module-list.nix b/nixos/modules/module-list.nix
index 660644eade8d..37e90232da2a 100644
--- a/nixos/modules/module-list.nix
+++ b/nixos/modules/module-list.nix
@@ -433,6 +433,7 @@
   ./services/monitoring/hdaps.nix
   ./services/monitoring/heapster.nix
   ./services/monitoring/incron.nix
+  ./services/monitoring/kapacitor.nix
   ./services/monitoring/longview.nix
   ./services/monitoring/monit.nix
   ./services/monitoring/munin.nix
diff --git a/nixos/modules/services/monitoring/kapacitor.nix b/nixos/modules/services/monitoring/kapacitor.nix
new file mode 100644
index 000000000000..1de0a8d5af2f
--- /dev/null
+++ b/nixos/modules/services/monitoring/kapacitor.nix
@@ -0,0 +1,154 @@
+{ options, config, lib, pkgs, ... }:
+
+with lib;
+
+let
+  cfg = config.services.kapacitor;
+
+  kapacitorConf = pkgs.writeTextFile {
+    name = "kapacitord.conf";
+    text = ''
+      hostname="${config.networking.hostName}"
+      data_dir="${cfg.dataDir}"
+
+      [http]
+        bind-address = "${cfg.bind}:${toString cfg.port}"
+        log-enabled = false
+        auth-enabled = false
+
+      [task]
+        dir = "${cfg.dataDir}/tasks"
+        snapshot-interval = "${cfg.taskSnapshotInterval}"
+
+      [replay]
+        dir = "${cfg.dataDir}/replay"
+
+      [storage]
+        boltdb = "${cfg.dataDir}/kapacitor.db"
+
+      ${optionalString (cfg.loadDirectory != null) ''
+        [load]
+          enabled = true
+          dir = "${cfg.loadDirectory}"
+      ''}
+
+      ${optionalString (cfg.defaultDatabase.enable) ''
+        [[influxdb]]
+          name = "default"
+          enabled = true
+          default = true
+          urls = [ "${cfg.defaultDatabase.url}" ]
+          username = "${cfg.defaultDatabase.username}"
+          password = "${cfg.defaultDatabase.password}"
+      ''}
+
+      ${cfg.extraConfig}
+    '';
+  };
+in
+{
+  options.services.kapacitor = {
+    enable = mkEnableOption "kapacitor";
+
+    dataDir = mkOption {
+      type = types.path;
+      example = "/var/lib/kapacitor";
+      default = "/var/lib/kapacitor";
+      description = "Location where Kapacitor stores its state";
+    };
+
+    port = mkOption {
+      type = types.int;
+      default = 9092;
+      description = "Port of Kapacitor";
+    };
+
+    bind = mkOption {
+      type = types.str;
+      default = "";
+      example = literalExample "0.0.0.0";
+      description = "Address to bind to. The default is to bind to all addresses";
+    };
+
+    extraConfig = mkOption {
+      description = "These lines go into kapacitord.conf verbatim.";
+      default = "";
+      type = types.lines;
+    };
+
+    user = mkOption {
+      type = types.str;
+      default = "kapacitor";
+      description = "User account under which Kapacitor runs";
+    };
+
+    group = mkOption {
+      type = types.str;
+      default = "kapacitor";
+      description = "Group under which Kapacitor runs";
+    };
+
+    taskSnapshotInterval = mkOption {
+      type = types.str;
+      description = "Specifies how often to snapshot the task state  (in InfluxDB time units)";
+      default = "1m0s";
+      example = "1m0s";
+    };
+
+    loadDirectory = mkOption {
+      type = types.nullOr types.path;
+      description = "Directory where to load services from, such as tasks, templates and handlers (or null to disable service loading on startup)";
+      default = null;
+    };
+
+    defaultDatabase = {
+      enable = mkEnableOption "kapacitor.defaultDatabase";
+
+      url = mkOption {
+        description = "The URL to an InfluxDB server that serves as the default database";
+        example = "http://localhost:8086";
+        type = types.string;
+      };
+
+      username = mkOption {
+        description = "The username to connect to the remote InfluxDB server";
+        type = types.string;
+      };
+
+      password = mkOption {
+        description = "The password to connect to the remote InfluxDB server";
+        type = types.string;
+      };
+    };
+  };
+
+  config = mkIf cfg.enable {
+    environment.systemPackages = [ pkgs.kapacitor ];
+
+    systemd.services.kapacitor = {
+      description = "Kapacitor Real-Time Stream Processing Engine";
+      wantedBy = [ "multi-user.target" ];
+      after = [ "networking.target" ];
+      serviceConfig = {
+        ExecStart = "${pkgs.kapacitor}/bin/kapacitord -config ${kapacitorConf}";
+        User = "kapacitor";
+        Group = "kapacitor";
+        PermissionsStartOnly = true;
+      };
+      preStart = ''
+        mkdir -p ${cfg.dataDir}
+        chown ${cfg.user}:${cfg.group} ${cfg.dataDir}
+      '';
+    };
+
+    users.users.kapacitor = {
+      uid = config.ids.uids.kapacitor;
+      description = "Kapacitor user";
+      home = cfg.dataDir;
+    };
+
+    users.groups.kapacitor = {
+      gid = config.ids.gids.kapacitor;
+    };
+  };
+}

From 9fe0e57d9d5e8ae95d081d8e33b867bcfbc4ba24 Mon Sep 17 00:00:00 2001
From: Franz Pletz <fpletz@fnordicwalking.de>
Date: Thu, 1 Nov 2018 21:58:21 +0100
Subject: [PATCH 0280/1129] tomcat_connectors: 1.2.41-dev-1613051 -> 1.2.46

Fixes CVE-2018-11759, CVE-2018-1323, CVE-2016-6808.
---
 .../apache-modules/tomcat-connectors/default.nix    | 13 ++++++++-----
 1 file changed, 8 insertions(+), 5 deletions(-)

diff --git a/pkgs/servers/http/apache-modules/tomcat-connectors/default.nix b/pkgs/servers/http/apache-modules/tomcat-connectors/default.nix
index e569ae8f8706..138864aec7d0 100644
--- a/pkgs/servers/http/apache-modules/tomcat-connectors/default.nix
+++ b/pkgs/servers/http/apache-modules/tomcat-connectors/default.nix
@@ -1,11 +1,11 @@
 { stdenv, fetchurl, apacheHttpd, jdk }:
 
 stdenv.mkDerivation rec {
-  name = "tomcat-connectors-1.2.41-dev-1613051";
+  name = "tomcat-connectors-1.2.46";
 
   src = fetchurl {
-    url = "https://people.apache.org/~rjung/mod_jk-dev/${name}-src.tar.gz";
-    sha256 = "11khipjpy3y84j1pp7yyx76y64jccvyhh3klwzqxylff49vjc2fc";
+    url = "mirror://apache/tomcat/tomcat-connectors/jk/${name}-src.tar.gz";
+    sha256 = "1sfbcsmshjkj4wc969ngjcxhjyp4mbkjprbs111d1b0x3l7547by";
   };
 
   configureFlags = [
@@ -24,7 +24,10 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ apacheHttpd jdk ];
 
-  meta = {
-    platforms = stdenv.lib.platforms.unix;
+  meta = with stdenv.lib; {
+    description = "Provides web server plugins to connect web servers with Tomcat";
+    homepage = https://tomcat.apache.org/download-connectors.cgi;
+    license = licenses.asl20;
+    platforms = platforms.unix;
   };
 }

From 0cca209943e8dfb326ae0ca09a60a02e1028da20 Mon Sep 17 00:00:00 2001
From: Aaron Andersen <aaron@fosslib.net>
Date: Thu, 1 Nov 2018 18:07:12 -0400
Subject: [PATCH 0281/1129] openscenegraph: revive version 3.4.0

---
 .../libraries/openscenegraph/3.4.0.nix        | 39 +++++++++++++++++++
 1 file changed, 39 insertions(+)
 create mode 100644 pkgs/development/libraries/openscenegraph/3.4.0.nix

diff --git a/pkgs/development/libraries/openscenegraph/3.4.0.nix b/pkgs/development/libraries/openscenegraph/3.4.0.nix
new file mode 100644
index 000000000000..8d0839041890
--- /dev/null
+++ b/pkgs/development/libraries/openscenegraph/3.4.0.nix
@@ -0,0 +1,39 @@
+{ stdenv, lib, fetchurl, cmake, pkgconfig, doxygen, unzip
+, freetype, libjpeg, jasper, libxml2, zlib, gdal, curl, libX11
+, cairo, poppler, librsvg, libpng, libtiff, libXrandr
+, xineLib, boost
+, withApps ? false
+, withSDL ? false, SDL
+, withQt4 ? false, qt4
+}:
+
+stdenv.mkDerivation rec {
+  name = "openscenegraph-${version}";
+  version = "3.4.0";
+
+  src = fetchurl {
+    url = "http://trac.openscenegraph.org/downloads/developer_releases/OpenSceneGraph-${version}.zip";
+    sha256 = "03h4wfqqk7rf3mpz0sa99gy715cwpala7964z2npd8jxfn27swjw";
+  };
+
+  nativeBuildInputs = [ pkgconfig cmake doxygen unzip ];
+
+  buildInputs = [
+    freetype libjpeg jasper libxml2 zlib gdal curl libX11
+    cairo poppler librsvg libpng libtiff libXrandr boost
+    xineLib
+  ] ++ lib.optional withSDL SDL
+    ++ lib.optional withQt4 qt4;
+
+  enableParallelBuilding = true;
+
+  cmakeFlags = lib.optional (!withApps) "-DBUILD_OSG_APPLICATIONS=OFF";
+
+  meta = with stdenv.lib; {
+    description = "A 3D graphics toolkit";
+    homepage = http://www.openscenegraph.org/;
+    maintainers = [ maintainers.raskin ];
+    platforms = platforms.linux;
+    license = "OpenSceneGraph Public License - free LGPL-based license";
+  };
+}

From b54374877142c748ffa3350913c9241bd01a5ff3 Mon Sep 17 00:00:00 2001
From: Aaron Andersen <aaron@fosslib.net>
Date: Thu, 1 Nov 2018 18:15:10 -0400
Subject: [PATCH 0282/1129] flightgear, simgear & speed_dreams: use
 openscenegraph_3_4 (version 3.4.0) instead of openscenegraph (version 3.6.2)

---
 pkgs/top-level/all-packages.nix | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 4a5a4ac6f926..67a74153dd55 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -11605,6 +11605,7 @@ with pkgs;
   opensaml-cpp = callPackage ../development/libraries/opensaml-cpp { };
 
   openscenegraph = callPackage ../development/libraries/openscenegraph { };
+  openscenegraph_3_4 = callPackage ../development/libraries/openscenegraph/3.4.0.nix { };
 
   openslp = callPackage ../development/libraries/openslp {};
 
@@ -12190,7 +12191,7 @@ with pkgs;
     avrlibc = pkgsCross.avr.libcCross;
   };
 
-  simgear = callPackage ../development/libraries/simgear { };
+  simgear = callPackage ../development/libraries/simgear { openscenegraph = openscenegraph_3_4; };
 
   simp_le = callPackage ../tools/admin/simp_le { };
 
@@ -20236,7 +20237,7 @@ with pkgs;
 
   fish-fillets-ng = callPackage ../games/fish-fillets-ng {};
 
-  flightgear = libsForQt5.callPackage ../games/flightgear { };
+  flightgear = libsForQt5.callPackage ../games/flightgear { openscenegraph = openscenegraph_3_4; };
 
   flock = callPackage ../development/tools/flock { };
 
@@ -20678,6 +20679,7 @@ with pkgs;
     # Torcs wants to make shared libraries linked with plib libraries (it provides static).
     # i686 is the only platform I know than can do that linking without plib built with -fPIC
     libpng = libpng12;
+    openscenegraph = openscenegraph_3_4;
   };
 
   torcs = callPackage ../games/torcs { };

From bdc293cabab2db61fdafd2b90c44f87a8b51b7de Mon Sep 17 00:00:00 2001
From: Aaron Andersen <aaron@fosslib.net>
Date: Thu, 1 Nov 2018 18:17:34 -0400
Subject: [PATCH 0283/1129] flightgear & simgear: 2017.3.1 -> 2018.2.2

---
 pkgs/development/libraries/simgear/default.nix | 7 +++----
 pkgs/games/flightgear/default.nix              | 8 ++++----
 2 files changed, 7 insertions(+), 8 deletions(-)

diff --git a/pkgs/development/libraries/simgear/default.nix b/pkgs/development/libraries/simgear/default.nix
index 28b96d17aa60..196fb59bb171 100644
--- a/pkgs/development/libraries/simgear/default.nix
+++ b/pkgs/development/libraries/simgear/default.nix
@@ -6,12 +6,12 @@
 
 stdenv.mkDerivation rec {
   name = "simgear-${version}";
-  version = "2017.3.1";
-  shortVersion = "2017.3";
+  version = "2018.2.2";
+  shortVersion = "2018.2";
 
   src = fetchurl {
     url = "mirror://sourceforge/flightgear/release-${shortVersion}/${name}.tar.bz2";
-    sha256 = "1x71wvycs2bjgmmacswgk6091p65p46fr40mr7f4kcipnx88bq0f";
+    sha256 = "f61576bc36aae36f350154749df1cee396763604c06b8a71c4b50452d9151ce5";
   };
 
   buildInputs = [ plib freeglut xproto libX11 libXext xextproto libXi inputproto
@@ -28,4 +28,3 @@ stdenv.mkDerivation rec {
     license = licenses.lgpl2;
   };
 }
-
diff --git a/pkgs/games/flightgear/default.nix b/pkgs/games/flightgear/default.nix
index b7a4af54929d..f3b77d87e179 100644
--- a/pkgs/games/flightgear/default.nix
+++ b/pkgs/games/flightgear/default.nix
@@ -6,14 +6,14 @@
 }:
 
 let
-  version = "2017.3.1";
-  shortVersion = "2017.3";
+  version = "2018.2.2";
+  shortVersion = "2018.2";
   data = stdenv.mkDerivation rec {
     name = "flightgear-base-${version}";
 
     src = fetchurl {
       url = "mirror://sourceforge/flightgear/release-${shortVersion}/FlightGear-${version}-data.tar.bz2";
-      sha256 = "166q0fsbp17lx1l1n6i8cfk3d1i79pasz1liya09z6m2i1pb026z";
+      sha256 = "c89b94e4cf3cb7eda728daf6cca6dd051f7a47863776c99fd2f3fe0054400ac4";
     };
 
     phases = [ "installPhase" ];
@@ -31,7 +31,7 @@ stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "mirror://sourceforge/flightgear/release-${shortVersion}/${name}.tar.bz2";
-    sha256 = "1kccf91vmxnzyki6grx09s10dvr4j6qrz34ikj7jn81g5scisbkg";
+    sha256 = "61f809ef0a3f6908d156f0c483ed5313d31b5a6ac74761955d0b266751718147";
   };
 
   # Of all the files in the source and data archives, there doesn't seem to be

From 51b661be2c84bb3a3cd0f44d211449006a047218 Mon Sep 17 00:00:00 2001
From: Aaron Andersen <aaron@fosslib.net>
Date: Thu, 1 Nov 2018 18:18:25 -0400
Subject: [PATCH 0284/1129] speed_dreams: fix compilation issues

---
 pkgs/games/speed-dreams/default.nix | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/pkgs/games/speed-dreams/default.nix b/pkgs/games/speed-dreams/default.nix
index 4bf03fec9de9..5f6e20c39b6b 100644
--- a/pkgs/games/speed-dreams/default.nix
+++ b/pkgs/games/speed-dreams/default.nix
@@ -35,6 +35,12 @@ stdenv.mkDerivation rec {
     tar -xf ${wip-cars-and-tracks}
   '';
 
+  prePatch = ''
+    # https://sourceforge.net/p/speed-dreams/mailman/message/35665539/
+    sed -i "s|lastSlash = '\\\0'|lastSlash = NULL|" src/libs/tgf/params.cpp
+    sed -i "s|const char\* error = '\\\0'|const char\* error = NULL|" src/libs/tgfclient/openalmusicplayer.cpp
+  '';
+
   preBuild = ''
     make -C src/libs/portability
     make -C src/libs/portability portability.o

From 31e9f37539636d7ecc53d972b47e8b2f1f8509dd Mon Sep 17 00:00:00 2001
From: Renaud <c0bw3b@users.noreply.github.com>
Date: Thu, 1 Nov 2018 23:25:26 +0100
Subject: [PATCH 0285/1129] vulkan-tools: 1.1.85 -> 1.1.85.0 (#49615)

sdk-1.1.85 is a branch and not the stable release tag
---
 pkgs/tools/graphics/vulkan-tools/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/tools/graphics/vulkan-tools/default.nix b/pkgs/tools/graphics/vulkan-tools/default.nix
index 43029380f44c..afb6812b3a3a 100644
--- a/pkgs/tools/graphics/vulkan-tools/default.nix
+++ b/pkgs/tools/graphics/vulkan-tools/default.nix
@@ -3,7 +3,7 @@
 
 stdenv.mkDerivation rec {
   name = "vulkan-tools-${version}";
-  version = "1.1.85";
+  version = "1.1.85.0";
 
   src = fetchFromGitHub {
     owner = "KhronosGroup";
@@ -12,8 +12,8 @@ stdenv.mkDerivation rec {
     sha256 = "0f4dfr8g0vy7y1hvs6z9lw52kissailzisby4qnz4akv0zz5y5s5";
   };
 
-  nativeBuildInputs = [ pkgconfig ];
-  buildInputs = [ cmake python3 vulkan-loader xlibsWrapper libxcb libXrandr wayland ];
+  nativeBuildInputs = [ cmake pkgconfig ];
+  buildInputs = [ python3 vulkan-loader xlibsWrapper libxcb libXrandr wayland ];
   enableParallelBuilding = true;
 
   cmakeFlags = [ "-DBUILD_ICD=OFF" "-DGLSLANG_INSTALL_DIR=${glslang}" ];

From ba9d6b673ab47913f592a60d20949e123830e991 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 1 Nov 2018 20:52:49 +0100
Subject: [PATCH 0286/1129] incrtcl: add license

---
 pkgs/development/libraries/incrtcl/default.nix | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/libraries/incrtcl/default.nix b/pkgs/development/libraries/incrtcl/default.nix
index b9781ba9aa08..a4a009c66580 100644
--- a/pkgs/development/libraries/incrtcl/default.nix
+++ b/pkgs/development/libraries/incrtcl/default.nix
@@ -3,7 +3,7 @@
 stdenv.mkDerivation rec {
   name = "incrtcl-${version}";
   version = "4.0.4";
-  
+
   src = fetchurl {
     url = mirror://sourceforge/incrtcl/%5BIncr%20Tcl_Tk%5D-source/3.4/itcl4.0.4.tar.gz;
     sha256 = "1ppc9b13cvmc6rp77k7dl2zb26xk0z30vxygmr4h1xr2r8w091k3";
@@ -22,9 +22,10 @@ stdenv.mkDerivation rec {
     libPrefix = "itcl3.4";
   };
 
-  meta = {
+  meta = with stdenv.lib; {
     homepage = http://incrtcl.sourceforge.net/;
     description = "Object Oriented Enhancements for Tcl/Tk";
-    platforms = stdenv.lib.platforms.unix;
+    platforms = platforms.unix;
+    license = licenses.tcltk;
   };
 }

From 6afad9b00e83edf28313adda9fe17896e934a0ed Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 1 Nov 2018 20:55:38 +0100
Subject: [PATCH 0287/1129] jama: add license

---
 pkgs/development/libraries/jama/default.nix | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/libraries/jama/default.nix b/pkgs/development/libraries/jama/default.nix
index 36eedadc4c2e..29fabdbb3b63 100644
--- a/pkgs/development/libraries/jama/default.nix
+++ b/pkgs/development/libraries/jama/default.nix
@@ -3,7 +3,7 @@
 stdenv.mkDerivation rec {
   name = "jama-${version}";
   version = "1.2.5";
-  
+
   src = fetchurl {
     url = https://math.nist.gov/tnt/jama125.zip;
     sha256 = "031ns526fvi2nv7jzzv02i7i5sjcyr0gj884i3an67qhsx8vyckl";
@@ -21,9 +21,10 @@ stdenv.mkDerivation rec {
       cp *.h $out/include
   '';
 
-  meta = {
+  meta = with stdenv.lib; {
     homepage = https://math.nist.gov/tnt/;
     description = "JAMA/C++ Linear Algebra Package: Java-like matrix C++ templates";
-    platforms = stdenv.lib.platforms.unix;
+    platforms = platforms.unix;
+    license = licenses.publicDomain;
   };
 }

From b13ab27360d022262ac0e3d04f48d5b5e672a15b Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 1 Nov 2018 20:58:40 +0100
Subject: [PATCH 0288/1129] jasper: add license

---
 lib/licenses.nix                              | 4 ++++
 pkgs/development/libraries/jasper/default.nix | 1 +
 2 files changed, 5 insertions(+)

diff --git a/lib/licenses.nix b/lib/licenses.nix
index 940baf53b7c3..092cbbbdb25a 100644
--- a/lib/licenses.nix
+++ b/lib/licenses.nix
@@ -400,6 +400,10 @@ lib.mapAttrs (n: v: v // { shortName = n; }) rec {
     free = false;
   };
 
+  jasper = spdx {
+    spdxId = "JasPer-2.0";
+    fullName = "JasPer License";
+  };
 
   lgpl2 = spdx {
     spdxId = "LGPL-2.0";
diff --git a/pkgs/development/libraries/jasper/default.nix b/pkgs/development/libraries/jasper/default.nix
index de4848c7dda4..eb9282274328 100644
--- a/pkgs/development/libraries/jasper/default.nix
+++ b/pkgs/development/libraries/jasper/default.nix
@@ -40,6 +40,7 @@ stdenv.mkDerivation rec {
     homepage = https://www.ece.uvic.ca/~frodo/jasper/;
     description = "JPEG2000 Library";
     platforms = platforms.unix;
+    license = licenses.jasper;
     maintainers = with maintainers; [ pSub ];
   };
 }

From 08f4d756af15a815996d3bed96e32534bd9d5fca Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 1 Nov 2018 21:01:54 +0100
Subject: [PATCH 0289/1129] dbus-java: add license

---
 pkgs/development/libraries/java/dbus-java/default.nix | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/libraries/java/dbus-java/default.nix b/pkgs/development/libraries/java/dbus-java/default.nix
index daee9adb1fdc..5ec10cc7e0df 100644
--- a/pkgs/development/libraries/java/dbus-java/default.nix
+++ b/pkgs/development/libraries/java/dbus-java/default.nix
@@ -18,8 +18,9 @@ stdenv.mkDerivation {
            -e "s|install: install-bin install-man install-doc|install: install-bin|" Makefile
   '';
 
-  meta = {
-    platforms = stdenv.lib.platforms.linux;
-    maintainers = [ stdenv.lib.maintainers.sander ];
+  meta = with stdenv.lib; {
+    platforms = platforms.linux;
+    maintainers = [ maintainers.sander ];
+    license = licenses.afl21;
   };
 }

From eea19467087b9f33db2cca433e98a286e02353c7 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 1 Nov 2018 21:04:02 +0100
Subject: [PATCH 0290/1129] gwt-dnd: add license

---
 pkgs/development/libraries/java/gwt-dragdrop/default.nix | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/pkgs/development/libraries/java/gwt-dragdrop/default.nix b/pkgs/development/libraries/java/gwt-dragdrop/default.nix
index b9d66fdc9716..e34699d7740e 100644
--- a/pkgs/development/libraries/java/gwt-dragdrop/default.nix
+++ b/pkgs/development/libraries/java/gwt-dragdrop/default.nix
@@ -3,13 +3,14 @@
 stdenv.mkDerivation {
   name = "gwt-dnd-2.6.5";
   builder = ./builder.sh;
-  
+
   src = fetchurl {
     url = http://gwt-dnd.googlecode.com/files/gwt-dnd-2.6.5.jar;
     sha256 = "07zdlr8afs499asnw0dcjmw1cnjc646v91lflx5dv4qj374c97fw";
-  };  
+  };
 
-  meta = {
-    platforms = stdenv.lib.platforms.unix;
+  meta = with stdenv.lib; {
+    platforms = platforms.unix;
+    license = licenses.asl20;
   };
 }

From a923a5aa2d3bd21bc0f644aae1683cb805dc8610 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 1 Nov 2018 21:08:14 +0100
Subject: [PATCH 0291/1129] gwt-widgets: add licenses

---
 pkgs/development/libraries/java/gwt-widgets/default.nix | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/pkgs/development/libraries/java/gwt-widgets/default.nix b/pkgs/development/libraries/java/gwt-widgets/default.nix
index b182964f6579..ec407076906d 100644
--- a/pkgs/development/libraries/java/gwt-widgets/default.nix
+++ b/pkgs/development/libraries/java/gwt-widgets/default.nix
@@ -3,13 +3,14 @@
 stdenv.mkDerivation {
   name = "gwt-widgets-0.2.0";
   builder = ./builder.sh;
-  
+
   src = fetchurl {
     url = mirror://sourceforge/gwt-widget/gwt-widgets-0.2.0-bin.tar.gz;
     sha256 = "09isj4j6842rj13nv8264irkjjhvmgihmi170ciabc98911bakxb";
-  };  
+  };
 
-  meta = {
-    platforms = stdenv.lib.platforms.unix;
+  meta = with stdenv.lib; {
+    platforms = platforms.unix;
+    license = with licenses; [ afl21 lgpl2 ];
   };
 }

From fe326f87942b3e65172bc68b0f18fad343dbf815 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 1 Nov 2018 21:12:48 +0100
Subject: [PATCH 0292/1129] hsqldb: add license

---
 pkgs/development/libraries/java/hsqldb/default.nix | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/libraries/java/hsqldb/default.nix b/pkgs/development/libraries/java/hsqldb/default.nix
index 97ffcb647d62..a478ab0fc502 100644
--- a/pkgs/development/libraries/java/hsqldb/default.nix
+++ b/pkgs/development/libraries/java/hsqldb/default.nix
@@ -12,8 +12,9 @@ stdenv.mkDerivation {
 
   buildInputs = [ unzip
   ];
-  
-  meta = {
-    platforms = stdenv.lib.platforms.unix;
+
+  meta = with stdenv.lib; {
+    platforms = platforms.unix;
+    license = licenses.bsd3;
   };
 }

From d356808b2f40f431007e00f7d4c8e35c27430774 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 1 Nov 2018 21:20:31 +0100
Subject: [PATCH 0293/1129] httpunit: add license + homepage

---
 pkgs/development/libraries/java/httpunit/default.nix | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/java/httpunit/default.nix b/pkgs/development/libraries/java/httpunit/default.nix
index 221a2e93e4fc..500c575f73aa 100644
--- a/pkgs/development/libraries/java/httpunit/default.nix
+++ b/pkgs/development/libraries/java/httpunit/default.nix
@@ -11,7 +11,9 @@ stdenv.mkDerivation {
 
   inherit unzip;
 
-  meta = {
-    platforms = stdenv.lib.platforms.unix;
+  meta = with stdenv.lib; {
+    homepage = http://httpunit.sourceforge.net;
+    platforms = platforms.unix;
+    license = licenses.mit;
   };
 }

From 0d140370cbb6ef92e6ba70ba0631e3bfd637a19d Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 1 Nov 2018 21:25:38 +0100
Subject: [PATCH 0294/1129] jdom: add meta data

---
 pkgs/development/libraries/java/jdom/default.nix | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/java/jdom/default.nix b/pkgs/development/libraries/java/jdom/default.nix
index 99d213a01dac..16755471acd7 100644
--- a/pkgs/development/libraries/java/jdom/default.nix
+++ b/pkgs/development/libraries/java/jdom/default.nix
@@ -9,7 +9,10 @@ stdenv.mkDerivation {
     sha256 = "1igmxzcy0s25zcy9vmcw0kd13lh60r0b4qg8lnp1jic33f427pxf";
   };
 
-  meta = {
-    platforms = stdenv.lib.platforms.unix;
+  meta = with stdenv.lib; {
+    description = "Java-based solution for accessing, manipulating, and outputting XML data from Java code";
+    homepage = http://www.jdom.org;
+    platforms = platforms.unix;
+    license = licenses.bsdOriginal;
   };
 }

From 4598cf4f3feb8b511975532479b816bb226ea35a Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 1 Nov 2018 21:27:44 +0100
Subject: [PATCH 0295/1129] libmatthew-java: add license

---
 .../development/libraries/java/libmatthew-java/default.nix | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/libraries/java/libmatthew-java/default.nix b/pkgs/development/libraries/java/libmatthew-java/default.nix
index ad5192f94ce2..98291a7763ca 100644
--- a/pkgs/development/libraries/java/libmatthew-java/default.nix
+++ b/pkgs/development/libraries/java/libmatthew-java/default.nix
@@ -10,8 +10,9 @@ stdenv.mkDerivation {
   PREFIX=''''${out}'';
   buildInputs = [ jdk ];
 
-  meta = {
-    platforms = stdenv.lib.platforms.linux;
-    maintainers = [ stdenv.lib.maintainers.sander ];
+  meta = with stdenv.lib; {
+    platforms = platforms.linux;
+    maintainers = [ maintainers.sander ];
+    license = licenses.mit;
   };
 }

From 5fabd1b3c62e71523641af49c2fd1067647ea70b Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 1 Nov 2018 21:29:42 +0100
Subject: [PATCH 0296/1129] lucene: add license + description

---
 pkgs/development/libraries/java/lucene/default.nix | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/java/lucene/default.nix b/pkgs/development/libraries/java/lucene/default.nix
index 6f6534cee3ea..691b9905b04f 100644
--- a/pkgs/development/libraries/java/lucene/default.nix
+++ b/pkgs/development/libraries/java/lucene/default.nix
@@ -11,7 +11,9 @@ stdenv.mkDerivation rec {
     sha256 = "1mxaxg65f7v8n60irjwm24v7hcisbl0srmpvcy1l4scs6rjj1awh";
   };
 
-  meta = {
-    platforms = stdenv.lib.platforms.unix;
+  meta = with stdenv.lib; {
+    description = "Java full-text search engine";
+    platforms = platforms.unix;
+    license = licenses.asl20;
   };
 }

From 645b5a0e82434297d196f3ecf6f2c101faa576e2 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 1 Nov 2018 21:34:18 +0100
Subject: [PATCH 0297/1129] mockobjects: add license + description

---
 pkgs/development/libraries/java/mockobjects/default.nix | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/java/mockobjects/default.nix b/pkgs/development/libraries/java/mockobjects/default.nix
index 551375d33bd6..ae93765ff981 100644
--- a/pkgs/development/libraries/java/mockobjects/default.nix
+++ b/pkgs/development/libraries/java/mockobjects/default.nix
@@ -9,7 +9,9 @@ stdenv.mkDerivation {
     sha256 = "18rnyqfcyh0s3dwkkaszdd50ssyjx5fa1y3ii309ldqg693lfgnz";
   };
 
-  meta = {
-    platforms = stdenv.lib.platforms.unix;
+  meta = with stdenv.lib; {
+    description = "Generic unit testing framework and methodology for testing any kind of code";
+    platforms = platforms.unix;
+    license = licenses.asl20;
   };
 }

From 678e28dfd582081ce72780ec51857279db810c6d Mon Sep 17 00:00:00 2001
From: Christian Rackerseder <git@echooff.de>
Date: Thu, 1 Nov 2018 23:52:52 +0100
Subject: [PATCH 0298/1129] yarn: 1.10.1 -> 1.12.1 (#49616)

---
 pkgs/development/tools/yarn/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/tools/yarn/default.nix b/pkgs/development/tools/yarn/default.nix
index 47a11e1b7f4d..be2b0689f925 100644
--- a/pkgs/development/tools/yarn/default.nix
+++ b/pkgs/development/tools/yarn/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "yarn-${version}";
-  version = "1.10.1";
+  version = "1.12.1";
 
   src = fetchzip {
     url = "https://github.com/yarnpkg/yarn/releases/download/v${version}/yarn-v${version}.tar.gz";
-    sha256 = "0j9y53k0wxgwjvvpbs6rr4nbydg3bn4khcxsrnzyrakym0ihgmr1";
+    sha256 = "084xci8y5na2765sh8flc8c5z7fik62filf1p58aqrb2000vna1j";
   };
 
   buildInputs = [ nodejs ];

From c8c1ed2c78b50e5db5ae715d3f037956ee6d44db Mon Sep 17 00:00:00 2001
From: obadz <obadz-git@obadz.com>
Date: Mon, 29 Oct 2018 20:22:40 +0000
Subject: [PATCH 0299/1129] nixos/zerotier: binds to network-online.target to
 avoid the 1m30s timeout before kill on shutdown

---
 nixos/modules/services/networking/zerotierone.nix | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/nixos/modules/services/networking/zerotierone.nix b/nixos/modules/services/networking/zerotierone.nix
index a4cd368397e7..764af3846fe5 100644
--- a/nixos/modules/services/networking/zerotierone.nix
+++ b/nixos/modules/services/networking/zerotierone.nix
@@ -39,7 +39,8 @@ in
     systemd.services.zerotierone = {
       description = "ZeroTierOne";
       path = [ cfg.package ];
-      after = [ "network.target" ];
+      bindsTo = [ "network-online.target" ];
+      after = [ "network-online.target" ];
       wantedBy = [ "multi-user.target" ];
       preStart = ''
         mkdir -p /var/lib/zerotier-one/networks.d

From 1a91d50ff2b621d5ea91d88f66acad7072c87dd3 Mon Sep 17 00:00:00 2001
From: Renaud <c0bw3b@users.noreply.github.com>
Date: Fri, 2 Nov 2018 00:11:07 +0100
Subject: [PATCH 0300/1129] dropwatch: init at 1.5 (#49593)

---
 pkgs/os-specific/linux/dropwatch/default.nix | 35 ++++++++++++++++++++
 pkgs/top-level/all-packages.nix              |  2 ++
 2 files changed, 37 insertions(+)
 create mode 100644 pkgs/os-specific/linux/dropwatch/default.nix

diff --git a/pkgs/os-specific/linux/dropwatch/default.nix b/pkgs/os-specific/linux/dropwatch/default.nix
new file mode 100644
index 000000000000..936dbf719a87
--- /dev/null
+++ b/pkgs/os-specific/linux/dropwatch/default.nix
@@ -0,0 +1,35 @@
+{ stdenv, fetchFromGitHub, autoreconfHook, pkgconfig
+, libnl, readline, libbfd, ncurses, zlib }:
+
+stdenv.mkDerivation rec {
+  pname = "dropwatch";
+  version = "1.5";
+  name = "${pname}-${version}";
+
+  src = fetchFromGitHub {
+    owner = "nhorman";
+    repo = pname;
+    rev = version;
+    sha256 = "085hyyl28v0vpxfnmzchl97fjfnzj46ynhkg6y4i6h194y0d99m7";
+  };
+
+  nativeBuildInputs = [ autoreconfHook pkgconfig ];
+
+  buildInputs = [ libbfd libnl ncurses readline zlib ];
+
+  # To avoid running into https://sourceware.org/bugzilla/show_bug.cgi?id=14243 we need to define:
+  NIX_CFLAGS_COMPILE = [
+    "-DPACKAGE=${pname}"
+    "-DPACKAGE_VERSION=${version}"
+  ];
+
+  enableParallelBuilding = true;
+
+  meta = with stdenv.lib; {
+    description = "Kernel dropped packet monitor";
+    homepage = https://github.com/nhorman/dropwatch;
+    license = licenses.gpl2;
+    platforms = platforms.linux;
+    maintainers = [ maintainers.c0bw3b ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 4a5a4ac6f926..20dbd2552dcb 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -14018,6 +14018,8 @@ with pkgs;
 
   drbd = callPackage ../os-specific/linux/drbd { };
 
+  dropwatch = callPackage ../os-specific/linux/dropwatch { };
+
   dstat = callPackage ../os-specific/linux/dstat { };
 
   # unstable until the first 1.x release

From 3f0fa6296a52d5513f86659f4b7d1813a0e59fee Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Dani=C3=ABl=20de=20Kok?= <me@github.danieldk.eu>
Date: Fri, 2 Nov 2018 00:13:43 +0100
Subject: [PATCH 0301/1129] leveldb: 1.18 -> 1.20 (#49587)

Changelog:

1.20: https://github.com/google/leveldb/releases/tag/v1.20
1.19: https://github.com/google/leveldb/releases/tag/v1.19
---
 pkgs/development/libraries/leveldb/default.nix | 13 +++++++------
 1 file changed, 7 insertions(+), 6 deletions(-)

diff --git a/pkgs/development/libraries/leveldb/default.nix b/pkgs/development/libraries/leveldb/default.nix
index 2b50c09af5cc..c459a4048e45 100644
--- a/pkgs/development/libraries/leveldb/default.nix
+++ b/pkgs/development/libraries/leveldb/default.nix
@@ -2,21 +2,21 @@
 
 stdenv.mkDerivation rec {
   name = "leveldb-${version}";
-  version = "1.18";
+  version = "1.20";
 
   src = fetchFromGitHub {
     owner = "google";
     repo = "leveldb";
     rev = "v${version}";
-    sha256 = "1bnsii47vbyqnbah42qgq6pbmmcg4k3fynjnw7whqfv6lpdgmb8d";
+    sha256 = "01kxga1hv4wp94agx5vl3ybxfw5klqrdsrb6p6ywvnjmjxm8322y";
   };
 
   buildPhase = ''
-    make all leveldbutil libmemenv.a
+    make all
   '';
 
   installPhase = (stdenv.lib.optionalString stdenv.isDarwin ''
-    for file in *.dylib*; do
+    for file in out-shared/*.dylib*; do
       install_name_tool -id $out/lib/$file $file
     done
   '') + # XXX consider removing above after transition to cmake in the next release
@@ -27,9 +27,10 @@ stdenv.mkDerivation rec {
     mkdir -p $out/include/leveldb/helpers
     cp helpers/memenv/memenv.h $out/include/leveldb/helpers
 
-    cp lib* $out/lib
+    cp out-shared/lib* $out/lib
+    cp out-static/lib* $out/lib
 
-    cp leveldbutil $out/bin
+    cp out-static/leveldbutil $out/bin
   ";
 
   meta = with stdenv.lib; {

From 0810d631a489fcd819eafc530c45e768570ace8d Mon Sep 17 00:00:00 2001
From: Brian Olsen <brian@maven-group.org>
Date: Thu, 1 Nov 2018 23:55:44 +0100
Subject: [PATCH 0302/1129] nixos/rspamd: Add support for included files

By default rspamd will look for multiple files in /etc/rspamd/local.d
and /etc/rspamd/override.d to be included in subsections of the merged
final config for rspamd. Most of the config snippets in the official
rspamd documentation are made to these files and so it makes sense for
NixOS to support them and this is what this commit does.

As part of rspamd 1.8.1 support was added for having custom Lua
rules stored in $LOCAL_CONFDIR/rspamd.local.lua which means that it is
now possible for NixOS to support such rules and so this commit also
adds support for this to the rspamd module.
---
 nixos/modules/services/mail/rspamd.nix | 79 +++++++++++++++++++++++++-
 nixos/tests/rspamd.nix                 | 77 ++++++++++++++++++++++++-
 2 files changed, 151 insertions(+), 5 deletions(-)

diff --git a/nixos/modules/services/mail/rspamd.nix b/nixos/modules/services/mail/rspamd.nix
index ff01a5dee53d..d83d6f1f750c 100644
--- a/nixos/modules/services/mail/rspamd.nix
+++ b/nixos/modules/services/mail/rspamd.nix
@@ -127,11 +127,15 @@ let
       options {
         pidfile = "$RUNDIR/rspamd.pid";
         .include "$CONFDIR/options.inc"
+        .include(try=true; priority=1,duplicate=merge) "$LOCAL_CONFDIR/local.d/options.inc"
+        .include(try=true; priority=10) "$LOCAL_CONFDIR/override.d/options.inc"
       }
 
       logging {
         type = "syslog";
         .include "$CONFDIR/logging.inc"
+        .include(try=true; priority=1,duplicate=merge) "$LOCAL_CONFDIR/local.d/logging.inc"
+        .include(try=true; priority=10) "$LOCAL_CONFDIR/override.d/logging.inc"
       }
 
       ${concatStringsSep "\n" (mapAttrsToList (name: value: ''
@@ -149,6 +153,41 @@ let
       ${cfg.extraConfig}
    '';
 
+  rspamdDir = pkgs.linkFarm "etc-rspamd-dir" (
+    (mapAttrsToList (name: file: { name = "local.d/${name}"; path = file.source; }) cfg.locals) ++
+    (mapAttrsToList (name: file: { name = "override.d/${name}"; path = file.source; }) cfg.overrides) ++
+    (optional (cfg.localLuaRules != null) { name = "rspamd.local.lua"; path = cfg.localLuaRules; }) ++
+    [ { name = "rspamd.conf"; path = rspamdConfFile; } ]
+  );
+
+  configFileModule = prefix: { name, config, ... }: {
+    options = {
+      enable = mkOption {
+        type = types.bool;
+        default = true;
+        description = ''
+          Whether this file ${prefix} should be generated.  This
+          option allows specific ${prefix} files to be disabled.
+        '';
+      };
+
+      text = mkOption {
+        default = null;
+        type = types.nullOr types.lines;
+        description = "Text of the file.";
+      };
+
+      source = mkOption {
+        type = types.path;
+        description = "Path of the source file.";
+      };
+    };
+    config = {
+      source = mkIf (config.text != null) (
+        let name' = "rspamd-${prefix}-" + baseNameOf name;
+        in mkDefault (pkgs.writeText name' config.text));
+    };
+  };
 in
 
 {
@@ -167,6 +206,41 @@ in
         description = "Whether to run the rspamd daemon in debug mode.";
       };
 
+      locals = mkOption {
+        type = with types; loaOf (submodule (configFileModule "locals"));
+        default = {};
+        description = ''
+          Local configuration files, written into <filename>/etc/rspamd/local.d/{name}</filename>.
+        '';
+        example = literalExample ''
+          { "redis.conf".source = "/nix/store/.../etc/dir/redis.conf";
+            "arc.conf".text = "allow_envfrom_empty = true;";
+          }
+        '';
+      };
+
+      overrides = mkOption {
+        type = with types; loaOf (submodule (configFileModule "overrides"));
+        default = {};
+        description = ''
+          Overridden configuration files, written into <filename>/etc/rspamd/override.d/{name}</filename>.
+        '';
+        example = literalExample ''
+          { "redis.conf".source = "/nix/store/.../etc/dir/redis.conf";
+            "arc.conf".text = "allow_envfrom_empty = true;";
+          }
+        '';
+      };
+
+      localLuaRules = mkOption {
+        default = null;
+        type = types.nullOr types.path;
+        description = ''
+          Path of file to link to <filename>/etc/rspamd/rspamd.local.lua</filename> for local
+          rules written in Lua
+        '';
+      };
+
       workers = mkOption {
         type = with types; attrsOf (submodule workerOpts);
         description = ''
@@ -242,16 +316,17 @@ in
       gid = config.ids.gids.rspamd;
     };
 
-    environment.etc."rspamd.conf".source = rspamdConfFile;
+    environment.etc."rspamd".source = rspamdDir;
 
     systemd.services.rspamd = {
       description = "Rspamd Service";
 
       wantedBy = [ "multi-user.target" ];
       after = [ "network.target" ];
+      restartTriggers = [ rspamdDir ];
 
       serviceConfig = {
-        ExecStart = "${pkgs.rspamd}/bin/rspamd ${optionalString cfg.debug "-d"} --user=${cfg.user} --group=${cfg.group} --pid=/run/rspamd.pid -c ${rspamdConfFile} -f";
+        ExecStart = "${pkgs.rspamd}/bin/rspamd ${optionalString cfg.debug "-d"} --user=${cfg.user} --group=${cfg.group} --pid=/run/rspamd.pid -c /etc/rspamd/rspamd.conf -f";
         Restart = "always";
         RuntimeDirectory = "rspamd";
         PrivateTmp = true;
diff --git a/nixos/tests/rspamd.nix b/nixos/tests/rspamd.nix
index a12622b6aa0b..af765f37b91b 100644
--- a/nixos/tests/rspamd.nix
+++ b/nixos/tests/rspamd.nix
@@ -27,7 +27,7 @@ let
       $machine->succeed("id \"rspamd\" >/dev/null");
       ${checkSocket "/run/rspamd/rspamd.sock" "rspamd" "rspamd" "660" }
       sleep 10;
-      $machine->log($machine->succeed("cat /etc/rspamd.conf"));
+      $machine->log($machine->succeed("cat /etc/rspamd/rspamd.conf"));
       $machine->log($machine->succeed("systemctl cat rspamd.service"));
       $machine->log($machine->succeed("curl http://localhost:11334/auth"));
       $machine->log($machine->succeed("curl http://127.0.0.1:11334/auth"));
@@ -55,7 +55,7 @@ in
       $machine->waitForFile("/run/rspamd.sock");
       ${checkSocket "/run/rspamd.sock" "root" "root" "600" }
       ${checkSocket "/run/rspamd-worker.sock" "root" "root" "666" }
-      $machine->log($machine->succeed("cat /etc/rspamd.conf"));
+      $machine->log($machine->succeed("cat /etc/rspamd/rspamd.conf"));
       $machine->log($machine->succeed("rspamc -h /run/rspamd-worker.sock stat"));
       $machine->log($machine->succeed("curl --unix-socket /run/rspamd-worker.sock http://localhost/ping"));
     '';
@@ -86,9 +86,80 @@ in
       $machine->waitForFile("/run/rspamd.sock");
       ${checkSocket "/run/rspamd.sock" "root" "root" "600" }
       ${checkSocket "/run/rspamd-worker.sock" "root" "root" "666" }
-      $machine->log($machine->succeed("cat /etc/rspamd.conf"));
+      $machine->log($machine->succeed("cat /etc/rspamd/rspamd.conf"));
       $machine->log($machine->succeed("rspamc -h /run/rspamd-worker.sock stat"));
       $machine->log($machine->succeed("curl --unix-socket /run/rspamd-worker.sock http://localhost/ping"));
     '';
   };
+  customLuaRules = makeTest {
+    name = "rspamd-custom-lua-rules";
+    machine = {
+      environment.etc."tests/no-muh.eml".text = ''
+        From: Sheep1<bah@example.com>
+        To: Sheep2<mah@example.com>
+        Subject: Evil cows
+
+        I find cows to be evil don't you?
+      '';
+      environment.etc."tests/muh.eml".text = ''
+        From: Cow<cow@example.com>
+        To: Sheep2<mah@example.com>
+        Subject: Evil cows
+
+        Cows are majestic creatures don't Muh agree?
+      '';
+      services.rspamd = {
+        enable = true;
+        locals."groups.conf".text = ''
+          group "cows" {
+            symbol {
+              NO_MUH = {
+                weight = 1.0;
+                description = "Mails should not muh";
+              }
+            }
+          }
+        '';
+        localLuaRules = pkgs.writeText "rspamd.local.lua" ''
+          local rspamd_logger = require "rspamd_logger"
+          rspamd_config.NO_MUH = {
+            callback = function (task)
+              local parts = task:get_text_parts()
+              if parts then
+                for _,part in ipairs(parts) do
+                  local content = tostring(part:get_content())
+                  rspamd_logger.infox(rspamd_config, 'Found content %s', content)
+                  local found = string.find(content, "Muh");
+                  rspamd_logger.infox(rspamd_config, 'Found muh %s', tostring(found))
+                  if found then
+                    return true
+                  end
+                end
+              end
+              return false
+            end,
+            score = 5.0,
+	          description = 'Allow no cows',
+            group = "cows",
+          }
+          rspamd_logger.infox(rspamd_config, 'Work dammit!!!')
+        '';
+      };
+    };
+    testScript = ''
+      ${initMachine}
+      $machine->waitForOpenPort(11334);
+      $machine->log($machine->succeed("cat /etc/rspamd/rspamd.conf"));
+      $machine->log($machine->succeed("cat /etc/rspamd/rspamd.local.lua"));
+      $machine->log($machine->succeed("cat /etc/rspamd/local.d/groups.conf"));
+      ${checkSocket "/run/rspamd/rspamd.sock" "rspamd" "rspamd" "660" }
+      $machine->log($machine->succeed("curl --unix-socket /run/rspamd/rspamd.sock http://localhost/ping"));
+      $machine->log($machine->succeed("rspamc -h 127.0.0.1:11334 stat"));
+      $machine->log($machine->succeed("cat /etc/tests/no-muh.eml | rspamc -h 127.0.0.1:11334"));
+      $machine->log($machine->succeed("cat /etc/tests/muh.eml | rspamc -h 127.0.0.1:11334 symbols"));
+      $machine->waitUntilSucceeds("journalctl -u rspamd | grep -i muh >&2");
+      $machine->log($machine->fail("cat /etc/tests/no-muh.eml | rspamc -h 127.0.0.1:11334 symbols | grep NO_MUH"));
+      $machine->log($machine->succeed("cat /etc/tests/muh.eml | rspamc -h 127.0.0.1:11334 symbols | grep NO_MUH"));
+    '';
+  };
 }

From 10e3dde91f4f1a4628d295b5dc1716ace194d28f Mon Sep 17 00:00:00 2001
From: Piotr Bogdan <ppbogdan@gmail.com>
Date: Fri, 2 Nov 2018 00:54:37 +0000
Subject: [PATCH 0303/1129] polybar: nuke reference to stdenv.cc, small clean
 up

---
 pkgs/applications/misc/polybar/default.nix | 13 +++++++++----
 1 file changed, 9 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/misc/polybar/default.nix b/pkgs/applications/misc/polybar/default.nix
index 0c358e4221a1..9756e8ca6c4f 100644
--- a/pkgs/applications/misc/polybar/default.nix
+++ b/pkgs/applications/misc/polybar/default.nix
@@ -64,10 +64,15 @@ stdenv.mkDerivation rec {
       (if i3Support || i3GapsSupport then makeWrapper else null)
     ];
 
-    fixupPhase = if (i3Support || i3GapsSupport) then ''
-    wrapProgram $out/bin/polybar \
-      --prefix PATH : "${if i3Support then i3 else i3-gaps}/bin"
-  '' else null;
+    postConfigure = ''
+      substituteInPlace ../include/settings.hpp --replace \
+        "${stdenv.cc}" "${stdenv.cc.name}"
+    '';
+
+    postInstall = if (i3Support || i3GapsSupport) then ''
+      wrapProgram $out/bin/polybar \
+        --prefix PATH : "${if i3Support then i3 else i3-gaps}/bin"
+    '' else "";
 
     nativeBuildInputs = [
       cmake pkgconfig

From 1ed146b438dba092af44fcae1e0e90f66573657e Mon Sep 17 00:00:00 2001
From: Lysergia <prikhi@users.noreply.github.com>
Date: Thu, 1 Nov 2018 22:08:19 -0400
Subject: [PATCH 0304/1129] lightdm-mini-greeter: 0.3.2 -> 0.3.3 (#49619)

New upstream release.
---
 .../display-managers/lightdm-mini-greeter/default.nix       | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/display-managers/lightdm-mini-greeter/default.nix b/pkgs/applications/display-managers/lightdm-mini-greeter/default.nix
index ef80aa00563f..cf5c30a1ead7 100644
--- a/pkgs/applications/display-managers/lightdm-mini-greeter/default.nix
+++ b/pkgs/applications/display-managers/lightdm-mini-greeter/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "lightdm-mini-greeter-${version}";
-  version = "0.3.2";
+  version = "0.3.3";
 
   src = fetchFromGitHub {
     owner = "prikhi";
     repo = "lightdm-mini-greeter";
     rev = version;
-    sha256 = "1g3lrh034w38hiq96b0xmghmlf87hcycwdh06dwkdksr0hl08wxy";
+    sha256 = "1xlj5wqagp765rqw40ci4wir21qwyszasynk82x8308k5d3asvwb";
   };
 
   nativeBuildInputs = [ autoreconfHook pkgconfig ];
@@ -26,7 +26,7 @@ stdenv.mkDerivation rec {
     description = "A minimal, configurable, single-user GTK3 LightDM greeter";
     homepage = https://github.com/prikhi/lightdm-mini-greeter;
     license = licenses.gpl3;
-    maintainers = with maintainers; [ mnacamura ];
+    maintainers = with maintainers; [ mnacamura prikhi ];
     platforms = platforms.linux;
   };
 }

From c246b5283c6805a1e3d222fb9271301a72451150 Mon Sep 17 00:00:00 2001
From: volth <volth@webmaster.ms>
Date: Fri, 2 Nov 2018 02:10:11 +0000
Subject: [PATCH 0305/1129] perldevel: 5.29.3 -> 5.29.4 (#49624)

---
 pkgs/development/interpreters/perl/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/interpreters/perl/default.nix b/pkgs/development/interpreters/perl/default.nix
index 42cc2a518d62..8d21d92ef430 100644
--- a/pkgs/development/interpreters/perl/default.nix
+++ b/pkgs/development/interpreters/perl/default.nix
@@ -186,7 +186,7 @@ in rec {
 
   # the latest Devel version
   perldevel = common {
-    version = "5.29.3";
-    sha256 = "054xi629408p2hv9475jghv6zd1bj69qqpiby8cy9qw5vismgi17";
+    version = "5.29.4";
+    sha256 = "153r0f6jdqrl7hxrvhfivf5g8ivhbvggfhg841q3hi3db5rc86k4";
   };
 }

From 62429fe41b3ac06705ae9d8ddf5b66afa739c65a Mon Sep 17 00:00:00 2001
From: Ben Wolsieffer <benwolsieffer@gmail.com>
Date: Sat, 20 Oct 2018 22:56:20 -0400
Subject: [PATCH 0306/1129] raspberrypiWirelessFirmware: 2018-05-30 ->
 2018-08-20

---
 .../firmware/raspberrypi-wireless/default.nix | 39 +++++++++----------
 1 file changed, 19 insertions(+), 20 deletions(-)

diff --git a/pkgs/os-specific/linux/firmware/raspberrypi-wireless/default.nix b/pkgs/os-specific/linux/firmware/raspberrypi-wireless/default.nix
index eb5b0bd294c8..89b4f70264eb 100644
--- a/pkgs/os-specific/linux/firmware/raspberrypi-wireless/default.nix
+++ b/pkgs/os-specific/linux/firmware/raspberrypi-wireless/default.nix
@@ -1,52 +1,51 @@
-{ stdenv, fetchurl, dpkg }:
+{ stdenv, fetchurl, fetchFromGitHub, dpkg }:
 
 stdenv.mkDerivation rec {
   name = "raspberrypi-wireless-firmware-${version}";
-  version = "2018-05-30";
+  version = "2018-08-20";
 
   srcs = [
-    (fetchurl {
-      url = "https://archive.raspberrypi.org/debian/pool/main/b/bluez-firmware/bluez-firmware_1.2-3+rpt5.debian.tar.xz";
-      sha256 = "06zpyrz6frkgjy26hr3998klnhjdqxwashgjgvj9rgbcqy70nkxg";
+    (fetchFromGitHub {
+      name = "bluez-firmware";
+      owner = "RPi-Distro";
+      repo = "bluez-firmware";
+      rev = "ade2bae1aaaebede09abb8fb546f767a0e4c7804";
+      sha256 = "07gm76gxp5anv6paryvxcp34a86fkny8kdlzqhzcpfczzglkp6ag";
     })
-    (fetchurl {
-      url = "https://archive.raspberrypi.org/debian/pool/main/f/firmware-nonfree/firmware-brcm80211_20161130-3+rpt3_all.deb";
-      sha256 = "10l74ac28baprnsiylf2vy4pkxgb3crixid90ngs6si9smm7rn6z";
+    (fetchFromGitHub {
+      name = "firmware-nonfree";
+      owner = "RPi-Distro";
+      repo = "firmware-nonfree";
+      rev = "b518de45ced519e8f7a499f4778100173402ae43";
+      sha256 = "1d5026ic9awji6c67irpwsxpxgsc0dhn11d3abkxi2vvra1pir4g";
     })
   ];
 
   sourceRoot = ".";
+
   dontBuild = true;
   # Firmware blobs do not need fixing and should not be modified
   dontFixup = true;
 
-
-  # Unpack the debian package
-  nativeBuildInputs = [ dpkg ];
-  unpackCmd = ''
-    if ! [[ "$curSrc" =~ \.deb$ ]]; then return 1; fi
-    dpkg -x "$curSrc" .
-  '';
-
   installPhase = ''
     mkdir -p "$out/lib/firmware/brcm"
 
     # Wifi firmware
-    for filename in lib/firmware/brcm/brcmfmac434??-sdio.*; do
+    for filename in firmware-nonfree/brcm/brcmfmac434??-sdio.*; do
       cp "$filename" "$out/lib/firmware/brcm"
     done
 
     # Bluetooth firmware
-    cp broadcom/*.hcd "$out/lib/firmware/brcm"
+    cp bluez-firmware/broadcom/*.hcd "$out/lib/firmware/brcm"
   '';
 
   outputHashMode = "recursive";
   outputHashAlgo = "sha256";
-  outputHash = "1gwzasl5w5nc0awqv3w2081ns63wd1yds0xh0dg95dc6brnqhhf8";
+  outputHash = "1s5gb00v42s5izbaw8irs1fwvhh7z9wl07czc0nkw6p91871ivb7";
 
   meta = with stdenv.lib; {
     description = "Firmware for builtin Wifi/Bluetooth devices in the Raspberry Pi 3 and Zero W";
-    homepage = https://archive.raspberrypi.org/debian/pool/main/f/firmware-nonfree/;
+    homepage = https://github.com/RPi-Distro/firmware-nonfree;
     license = licenses.unfreeRedistributableFirmware;
     platforms = platforms.linux;
     maintainers = with maintainers; [ lopsided98 ];

From f422f8d0ad94cbb0ba1d0daf2c5a95e8ddf14a4d Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Thu, 1 Nov 2018 22:29:18 -0500
Subject: [PATCH 0307/1129] pyre: fix darwin build

---
 pkgs/development/tools/pyre/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/tools/pyre/default.nix b/pkgs/development/tools/pyre/default.nix
index 99e53610c01c..108f8bdb3ab0 100644
--- a/pkgs/development/tools/pyre/default.nix
+++ b/pkgs/development/tools/pyre/default.nix
@@ -77,7 +77,7 @@ let
     description = "A performant type-checker for Python 3";
     homepage = https://pyre-check.org;
     license = licenses.mit;
-    platforms = with platforms; linux;
+    platforms = ocamlPackages.ocaml.meta.platforms;
     maintainers = with maintainers; [ teh ];
   };
 };

From c7c278dc0fdf97aea865efebb76454df6b44af2b Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Thu, 1 Nov 2018 22:31:11 -0500
Subject: [PATCH 0308/1129] pyre: enable tests

---
 pkgs/development/tools/pyre/default.nix | 12 +++++++++---
 1 file changed, 9 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/tools/pyre/default.nix b/pkgs/development/tools/pyre/default.nix
index 108f8bdb3ab0..a0ea5f59f255 100644
--- a/pkgs/development/tools/pyre/default.nix
+++ b/pkgs/development/tools/pyre/default.nix
@@ -1,5 +1,5 @@
 { stdenv, fetchFromGitHub, ocamlPackages, makeWrapper, writeScript
-, dune, python3, rsync, fetchpatch }:
+, dune, python3, rsync, fetchpatch, buck }:
 let
   # Manually set version - the setup script requires
   # hg and git + keeping the .git directory around.
@@ -120,6 +120,10 @@ in python3.pkgs.buildPythonApplication rec {
     substituteInPlace scripts/build-pypi-package.sh \
         --replace 'NIX_BINARY_FILE' '${pyre-bin}/bin/pyre.bin' \
         --replace 'BUILD_ROOT="$(mktemp -d)"' "BUILD_ROOT=$(pwd)/build"
+    substituteInPlace client/buck.py \
+        --replace '"buck"' '"${buck}/bin/buck"'
+    substituteInPlace client/tests/buck_test.py \
+        --replace '"buck"' '"${buck}/bin/buck"'
   '';
 
   buildInputs = [ pyre-bin rsync ];
@@ -128,6 +132,8 @@ in python3.pkgs.buildPythonApplication rec {
     bash scripts/build-pypi-package.sh --version ${pyre-version} --bundle-typeshed ${typeshed}
     cp -r build/dist dist
   '';
-
-  doCheck = false; # can't open file 'nix_run_setup':
+  checkPhase = ''
+    sed -i 's/which python3/command -v python3/g' scripts/run-python-tests.sh
+    bash scripts/run-python-tests.sh
+  '';
 }

From 61aa7e0e2905d9614e01633bdb54a10a82ef2280 Mon Sep 17 00:00:00 2001
From: Peter Romfeld <peter.romfeld.hk@gmail.com>
Date: Fri, 2 Nov 2018 15:10:18 +0800
Subject: [PATCH 0309/1129] fastlane: 2.105.2 -> 2.107.0

---
 pkgs/tools/admin/fastlane/Gemfile.lock | 10 +++++-----
 pkgs/tools/admin/fastlane/gemset.nix   | 16 ++++++++--------
 2 files changed, 13 insertions(+), 13 deletions(-)

diff --git a/pkgs/tools/admin/fastlane/Gemfile.lock b/pkgs/tools/admin/fastlane/Gemfile.lock
index 631d9cb9628a..88162a3432d9 100644
--- a/pkgs/tools/admin/fastlane/Gemfile.lock
+++ b/pkgs/tools/admin/fastlane/Gemfile.lock
@@ -26,7 +26,7 @@ GEM
     faraday_middleware (0.12.2)
       faraday (>= 0.7.4, < 1.0)
     fastimage (2.1.4)
-    fastlane (2.105.2)
+    fastlane (2.107.0)
       CFPropertyList (>= 2.3, < 4.0.0)
       addressable (>= 2.3, < 3.0.0)
       babosa (>= 1.0.2, < 2.0.0)
@@ -71,10 +71,10 @@ GEM
       representable (~> 3.0)
       retriable (>= 2.0, < 4.0)
       signet (~> 0.9)
-    googleauth (0.6.6)
+    googleauth (0.6.7)
       faraday (~> 0.12)
       jwt (>= 1.4, < 3.0)
-      memoist (~> 0.12)
+      memoist (~> 0.16)
       multi_json (~> 1.11)
       os (>= 0.9, < 2.0)
       signet (~> 0.7)
@@ -105,7 +105,7 @@ GEM
     rouge (2.0.7)
     rubyzip (1.2.2)
     security (0.1.3)
-    signet (0.10.0)
+    signet (0.11.0)
       addressable (~> 2.3)
       faraday (~> 0.9)
       jwt (>= 1.5, < 3.0)
@@ -127,7 +127,7 @@ GEM
     unf_ext (0.0.7.5)
     unicode-display_width (1.4.0)
     word_wrap (1.0.0)
-    xcodeproj (1.6.0)
+    xcodeproj (1.7.0)
       CFPropertyList (>= 2.3.3, < 4.0)
       atomos (~> 0.1.3)
       claide (>= 1.0.2, < 2.0)
diff --git a/pkgs/tools/admin/fastlane/gemset.nix b/pkgs/tools/admin/fastlane/gemset.nix
index c2133c7c8c9c..5afad1683c99 100644
--- a/pkgs/tools/admin/fastlane/gemset.nix
+++ b/pkgs/tools/admin/fastlane/gemset.nix
@@ -153,10 +153,10 @@
     dependencies = ["CFPropertyList" "addressable" "babosa" "colored" "commander-fastlane" "dotenv" "emoji_regex" "excon" "faraday" "faraday-cookie_jar" "faraday_middleware" "fastimage" "gh_inspector" "google-api-client" "highline" "json" "mini_magick" "multi_json" "multi_xml" "multipart-post" "plist" "public_suffix" "rubyzip" "security" "simctl" "slack-notifier" "terminal-notifier" "terminal-table" "tty-screen" "tty-spinner" "word_wrap" "xcodeproj" "xcpretty" "xcpretty-travis-formatter"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "1fq1zqvwim939klkx2893cbm1v4gi3a991qrj8933l3qg1y41fx2";
+      sha256 = "1d3jv7ik3rivmhxzcapia2lzf9xjmjgi4yxkl60ly6pcbbvhl48w";
       type = "gem";
     };
-    version = "2.105.2";
+    version = "2.107.0";
   };
   gh_inspector = {
     source = {
@@ -179,10 +179,10 @@
     dependencies = ["faraday" "jwt" "memoist" "multi_json" "os" "signet"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "1747p1dhpvz76i98xnjrvaj785y1232svm0nc8g9by6pz835gp2l";
+      sha256 = "1yj7j1rnyamxpn5ybgdgbiw89v9bq2r0h85s2y2jzvqanvm7iflq";
       type = "gem";
     };
-    version = "0.6.6";
+    version = "0.6.7";
   };
   highline = {
     source = {
@@ -367,10 +367,10 @@
     dependencies = ["addressable" "faraday" "jwt" "multi_json"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "14rhv3riz6ki4ix4l79b6ckq7d015673gxkxvzdcxjl1h8plpdcy";
+      sha256 = "1f5d3bz5bjc4b0r2jmqd15qf07lgsqkgd25f0h46jihrf9l5fsi4";
       type = "gem";
     };
-    version = "0.10.0";
+    version = "0.11.0";
   };
   simctl = {
     dependencies = ["CFPropertyList" "naturally"];
@@ -476,10 +476,10 @@
     dependencies = ["CFPropertyList" "atomos" "claide" "colored2" "nanaimo"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "1f4shbzff3wsk1jq0v9bs10496qdx69k2jfpf11p4q2ik3jdnsv7";
+      sha256 = "1hy2ihcqfjlsrnf8qkm51m1kk154yp0l0007f269ky8j9z5lyw3p";
       type = "gem";
     };
-    version = "1.6.0";
+    version = "1.7.0";
   };
   xcpretty = {
     dependencies = ["rouge"];

From 6a449c0742be295deb0f6edc25ff94870bb5250e Mon Sep 17 00:00:00 2001
From: Vincent Laporte <Vincent.Laporte@gmail.com>
Date: Fri, 2 Nov 2018 08:51:24 +0000
Subject: [PATCH 0310/1129] coqPackages.contribs.zfc: enable for Coq 8.8

---
 pkgs/development/coq-modules/contribs/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/coq-modules/contribs/default.nix b/pkgs/development/coq-modules/contribs/default.nix
index d12d3fefb944..a1ecdd610a3e 100644
--- a/pkgs/development/coq-modules/contribs/default.nix
+++ b/pkgs/development/coq-modules/contribs/default.nix
@@ -1018,7 +1018,7 @@ let mkContrib = repo: revs: param:
     sha256 = "0fp3vdl79c8d759qjhk42rjfpkd0ba4pcw572f5gxn28kfwz3rrj";
   };
 
-  zfc = mkContrib "zfc" [ "8.5" "8.6" "8.7" ] {
+  zfc = mkContrib "zfc" [ "8.5" "8.6" "8.7" "8.8" ] {
     version = "v8.5.0-5-gbba3259";
     rev = "bba325933370fea64780b1afa2fad54c1b567819";
     sha256 = "0iwkpmc22nwasrk4g7ki4s5y05zjs7kmqk3j98giwp2wiavhgapn";

From 45fd44c66db655c4c55e208f09badf091168d822 Mon Sep 17 00:00:00 2001
From: Cole Mickens <cole.mickens@gmail.com>
Date: Fri, 2 Nov 2018 02:01:36 -0700
Subject: [PATCH 0311/1129] google-chrome-dev: add at-spi2-core dependency

---
 .../networking/browsers/google-chrome/default.nix             | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/browsers/google-chrome/default.nix b/pkgs/applications/networking/browsers/google-chrome/default.nix
index 0d86e4f8294c..6043744f296c 100644
--- a/pkgs/applications/networking/browsers/google-chrome/default.nix
+++ b/pkgs/applications/networking/browsers/google-chrome/default.nix
@@ -4,7 +4,7 @@
 , glib, fontconfig, freetype, pango, cairo, libX11, libXi, atk, gconf, nss, nspr
 , libXcursor, libXext, libXfixes, libXrender, libXScrnSaver, libXcomposite, libxcb
 , alsaLib, libXdamage, libXtst, libXrandr, expat, cups
-, dbus, gtk2, gtk3, gdk_pixbuf, gcc-unwrapped, at-spi2-atk
+, dbus, gtk2, gtk3, gdk_pixbuf, gcc-unwrapped, at-spi2-atk, at-spi2-core
 , kerberos
 
 # command line arguments which are always set e.g "--disable-gpu"
@@ -57,7 +57,7 @@ let
     libexif
     liberation_ttf curl utillinux xdg_utils wget
     flac harfbuzz icu libpng opusWithCustomModes snappy speechd
-    bzip2 libcap at-spi2-atk
+    bzip2 libcap at-spi2-atk at-spi2-core
     kerberos
   ] ++ optional pulseSupport libpulseaudio
     ++ [ gtk ];

From de6d025592be1ade67166817abf1e624d1c7e642 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Dani=C3=ABl=20de=20Kok?= <me@danieldk.eu>
Date: Fri, 2 Nov 2018 09:20:05 +0100
Subject: [PATCH 0312/1129] mupdf: 1.13.0 -> 1.14.0

Changelog: https://mupdf.com/release_history.html
---
 pkgs/applications/misc/mupdf/darwin.patch     | 73 +++++++------------
 pkgs/applications/misc/mupdf/default.nix      | 18 ++---
 .../misc/mupdf/mupdf-1.13-shared_libs-1.patch | 45 ------------
 .../misc/mupdf/mupdf-1.14-shared_libs.patch   | 39 ++++++++++
 4 files changed, 73 insertions(+), 102 deletions(-)
 delete mode 100644 pkgs/applications/misc/mupdf/mupdf-1.13-shared_libs-1.patch
 create mode 100644 pkgs/applications/misc/mupdf/mupdf-1.14-shared_libs.patch

diff --git a/pkgs/applications/misc/mupdf/darwin.patch b/pkgs/applications/misc/mupdf/darwin.patch
index 7466fc2ca62b..be1b84b0012f 100644
--- a/pkgs/applications/misc/mupdf/darwin.patch
+++ b/pkgs/applications/misc/mupdf/darwin.patch
@@ -1,47 +1,30 @@
-diff --git a/Makerules b/Makerules
---- a/Makerules
-+++ b/Makerules
-@@ -81,22 +81,10 @@ HAVE_GLUT ?= yes
- SYS_GLUT_CFLAGS := -Wno-deprecated-declarations
- SYS_GLUT_LIBS := -framework GLUT -framework OpenGL
- 
--CC = xcrun cc
--AR = xcrun ar
--LD = xcrun ld
--RANLIB_CMD = xcrun ranlib $@
+diff -ruN mupdf-1.14.0-source.orig/Makerules mupdf-1.14.0-source/Makerules
+--- mupdf-1.14.0-source.orig/Makerules	2018-11-02 06:57:12.114012496 +0100
++++ mupdf-1.14.0-source/Makerules	2018-11-02 10:11:56.717232992 +0100
+@@ -80,13 +80,6 @@
+   HAVE_GLUT := yes
+   SYS_GLUT_CFLAGS := -Wno-deprecated-declarations
+   SYS_GLUT_LIBS := -framework GLUT -framework OpenGL
+-  CC = xcrun cc
+-  AR = xcrun ar
+-  LD = xcrun ld
+-  RANLIB = xcrun ranlib
 -
--# Linux uses pkg-config for system libraries.
--else ifeq "$(OS)" "Linux"
+-else ifeq ($(OS),Linux)
+-  HAVE_OBJCOPY := yes
+ 
+   ifeq ($(shell pkg-config --exists freetype2 && echo yes),yes)
+ 	SYS_FREETYPE_CFLAGS := $(shell pkg-config --cflags freetype2)
+@@ -119,12 +112,6 @@
+ 	SYS_CURL_LIBS := $(shell pkg-config --libs libcurl)
+   endif
+ 
+-  HAVE_GLUT := yes
+-  ifeq ($(HAVE_GLUT),yes)
+-	SYS_GLUT_CFLAGS :=
+-	SYS_GLUT_LIBS := -lglut -lGL
+-  endif
 -
- HAVE_PTHREAD := yes
- SYS_PTHREAD_CFLAGS :=
- SYS_PTHREAD_LIBS := -lpthread
- 
--HAVE_GLUT := yes
--SYS_GLUT_CFLAGS :=
--SYS_GLUT_LIBS := -lglut -lGL
--
- ifeq "$(shell pkg-config --exists 'libcrypto >= 1.1.0' && echo yes)" "yes"
- HAVE_LIBCRYPTO := yes
- SYS_LIBCRYPTO_CFLAGS := -DHAVE_LIBCRYPTO $(shell pkg-config --cflags libcrypto)
-@@ -113,7 +101,7 @@ SYS_CURL_CFLAGS += $(shell pkg-config --cflags openssl)
- SYS_CURL_DEPS += $(shell pkg-config --libs openssl)
- endif
- endif
--SYS_CURL_DEPS += -lpthread -lrt
-+SYS_CURL_DEPS += -lpthread
- 
- ifeq "$(shell pkg-config --exists x11 xext && echo yes)" "yes"
- HAVE_X11 := yes
-diff --git a/platform/gl/gl-main.c b/platform/gl/gl-main.c
-index d58f7ba..808af18 100644
---- a/platform/gl/gl-main.c
-+++ b/platform/gl/gl-main.c
-@@ -16,6 +16,7 @@ void glutExit(void) {}
- void glutMouseWheelFunc(void *fn) {}
- void glutInitErrorFunc(void *fn) {}
- void glutInitWarningFunc(void *fn) {}
-+#define glutSetOption(X,Y)
- #endif
- 
- enum
+   HAVE_X11 := $(shell pkg-config --exists x11 xext && echo yes)
+   ifeq ($(HAVE_X11),yes)
+ 	X11_CFLAGS := $(shell pkg-config --cflags x11 xext)
diff --git a/pkgs/applications/misc/mupdf/default.nix b/pkgs/applications/misc/mupdf/default.nix
index bce2a79cde33..d4f59272c9c9 100644
--- a/pkgs/applications/misc/mupdf/default.nix
+++ b/pkgs/applications/misc/mupdf/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, lib, fetchurl, fetchpatch, pkgconfig, freetype, harfbuzz, openjpeg
+{ stdenv, lib, fetchurl, pkgconfig, freetype, harfbuzz, openjpeg
 , jbig2dec, libjpeg , darwin
 , enableX11 ? true, libX11, libXext, libXi, libXrandr
 , enableCurl ? true, curl, openssl
@@ -14,23 +14,17 @@ let
 
 
 in stdenv.mkDerivation rec {
-  version = "1.13.0";
+  version = "1.14.0";
   name = "mupdf-${version}";
 
   src = fetchurl {
     url = "https://mupdf.com/downloads/archive/${name}-source.tar.gz";
-    sha256 = "02faww5bnjw76k6igrjzwf0lnw4xd9ckc8d6ilc3c4gfrdi6j707";
+    sha256 = "093p7lv6pgyymagn28n58fs0np928r0i5p2az9cc4gwccwx4hhy4";
   };
 
-  patches = [
-    (fetchpatch {
-      name = "CVE-2018-10289.patch";
-      url = "https://bugs.ghostscript.com/attachment.cgi?id=15230";
-      sha256 = "0jmpacxd9930g6k57kda9jrcrbk75whdlv8xwmqg5jwn848qvy4q";
-    })
-  ]
+  patches =
     # Use shared libraries to decrease size
-    ++ stdenv.lib.optional (!stdenv.isDarwin) ./mupdf-1.13-shared_libs-1.patch
+       stdenv.lib.optional (!stdenv.isDarwin) ./mupdf-1.14-shared_libs.patch
     ++ stdenv.lib.optional stdenv.isDarwin ./darwin.patch
   ;
 
@@ -38,7 +32,7 @@ in stdenv.mkDerivation rec {
     sed -i "s/__OPENJPEG__VERSION__/${openJpegVersion}/" source/fitz/load-jpx.c
   '';
 
-  makeFlags = [ "prefix=$(out)" ];
+  makeFlags = [ "prefix=$(out) USE_SYSTEM_LIBS=yes" ];
   nativeBuildInputs = [ pkgconfig ];
   buildInputs = [ freetype harfbuzz openjpeg jbig2dec libjpeg freeglut libGLU ]
                 ++ lib.optionals enableX11 [ libX11 libXext libXi libXrandr ]
diff --git a/pkgs/applications/misc/mupdf/mupdf-1.13-shared_libs-1.patch b/pkgs/applications/misc/mupdf/mupdf-1.13-shared_libs-1.patch
deleted file mode 100644
index e29f1f52077c..000000000000
--- a/pkgs/applications/misc/mupdf/mupdf-1.13-shared_libs-1.patch
+++ /dev/null
@@ -1,45 +0,0 @@
---- mupdf-1.12.0-source.orig/Makefile	2017-12-13 15:00:30.000000000 +0100
-+++ mupdf-1.12.0-source/Makefile	2017-12-31 00:05:23.003277481 +0100
-@@ -14,7 +14,7 @@
- # Do not specify CFLAGS or LIBS on the make invocation line - specify
- # XCFLAGS or XLIBS instead. Make ignores any lines in the makefile that
- # set a variable that was set on the command line.
--CFLAGS += $(XCFLAGS) -Iinclude
-+CFLAGS += $(XCFLAGS) -Iinclude -fPIC
- LIBS += $(XLIBS) -lm
- 
- LIBS += $(FREETYPE_LIBS)
-@@ -312,10 +312,10 @@
- 
- # --- Library ---
- 
--MUPDF_LIB = $(OUT)/libmupdf.a
--THIRD_LIB = $(OUT)/libmupdfthird.a
--THREAD_LIB = $(OUT)/libmuthreads.a
--PKCS7_LIB = $(OUT)/libmupkcs7.a
-+MUPDF_LIB = $(OUT)/libmupdf.so
-+THIRD_LIB = $(OUT)/libmupdfthird.so
-+THREAD_LIB = $(OUT)/libmuthreads.so
-+PKCS7_LIB = $(OUT)/libmupkcs7.so
- 
- MUPDF_OBJ := \
- 	$(FITZ_OBJ) \
-@@ -343,13 +343,17 @@
- 	$(ZLIB_OBJ) \
- 	$(LCMS2_OBJ)
- 
--$(MUPDF_LIB) : $(MUPDF_OBJ)
-+$(MUPDF_LIB) : $(MUPDF_OBJ) $(THIRD_LIB) $(THREAD_LIB)
-+	$(LINK_CMD) -shared -Wl,-soname -Wl,libmupdf.so -Wl,--no-undefined
- $(THIRD_LIB) : $(THIRD_OBJ)
-+	$(LINK_CMD) -shared -Wl,-soname -Wl,libmupdfthird.so -Wl,--no-undefined
- $(THREAD_LIB) : $(THREAD_OBJ)
-+	$(LINK_CMD) -shared -Wl,-soname -Wl,libmuthreads.so -Wl,--no-undefined -lpthread
- $(PKCS7_LIB) : $(PKCS7_OBJ)
-+	$(LINK_CMD) -shared -Wl,-soname -Wl,libmupkcs7.so
- 
--INSTALL_LIBS := $(MUPDF_LIB) $(THIRD_LIB)
-+INSTALL_LIBS := $(MUPDF_LIB) $(THIRD_LIB) $(THREAD_LIB) $(PKCS7_LIB)
- 
- # --- Tools and Apps ---
- 
diff --git a/pkgs/applications/misc/mupdf/mupdf-1.14-shared_libs.patch b/pkgs/applications/misc/mupdf/mupdf-1.14-shared_libs.patch
new file mode 100644
index 000000000000..131a1bbbf6bd
--- /dev/null
+++ b/pkgs/applications/misc/mupdf/mupdf-1.14-shared_libs.patch
@@ -0,0 +1,39 @@
+--- mupdf-1.14.0-source.orig/Makefile	2018-11-02 06:57:12.114012496 +0100
++++ mupdf-1.14.0-source/Makefile	2018-11-02 09:57:10.067945307 +0100
+@@ -20,7 +20,7 @@
+ # Do not specify CFLAGS or LIBS on the make invocation line - specify
+ # XCFLAGS or XLIBS instead. Make ignores any lines in the makefile that
+ # set a variable that was set on the command line.
+-CFLAGS += $(XCFLAGS) -Iinclude
++CFLAGS += $(XCFLAGS) -Iinclude -fPIC
+ LIBS += $(XLIBS) -lm
+ 
+ ifneq ($(threading),no)
+@@ -190,17 +190,21 @@
+ 
+ # --- Library ---
+ 
+-MUPDF_LIB = $(OUT)/libmupdf.a
+-THIRD_LIB = $(OUT)/libmupdf-third.a
+-THREAD_LIB = $(OUT)/libmupdf-threads.a
+-PKCS7_LIB = $(OUT)/libmupdf-pkcs7.a
++MUPDF_LIB = $(OUT)/libmupdf.so
++THIRD_LIB = $(OUT)/libmupdf-third.so
++THREAD_LIB = $(OUT)/libmupdf-threads.so
++PKCS7_LIB = $(OUT)/libmupdf-pkcs7.so
+ 
+-$(MUPDF_LIB) : $(MUPDF_OBJ)
++$(MUPDF_LIB) : $(MUPDF_OBJ) $(THIRD_LIB) $(THREAD_LIB)
++	$(LINK_CMD) $(THIRD_LIBS) -shared -Wl,-soname -Wl,libmupdf.so -Wl,--no-undefined
+ $(THIRD_LIB) : $(THIRD_OBJ)
++	$(LINK_CMD) -shared -Wl,-soname -Wl,libmupdf-third.so -Wl,--no-undefined
+ $(THREAD_LIB) : $(THREAD_OBJ)
++	$(LINK_CMD) -shared -Wl,-soname -Wl,libmupdf-threads.so -Wl,--no-undefined -lpthread
+ $(PKCS7_LIB) : $(PKCS7_OBJ)
++	$(LINK_CMD) -shared -Wl,-soname -Wl,libmupdf-pkcs7.so
+ 
+-INSTALL_LIBS := $(MUPDF_LIB) $(THIRD_LIB)
++INSTALL_LIBS := $(MUPDF_LIB) $(THIRD_LIB) $(THREAD_LIB) $(PKCS7_LIB)
+ 
+ # --- Main tools and viewers ---
+ 

From 73cdd5a4762b3372634eed039912a0e25a5fd501 Mon Sep 17 00:00:00 2001
From: aszlig <aszlig@nix.build>
Date: Fri, 2 Nov 2018 10:18:51 +0100
Subject: [PATCH 0313/1129] nixos/tests/chromium: Fix sandbox info matching

As reported by @andir, the regular expressions that match the sandbox
output are no longer matching in the recent Chromium bump as of
bb03fbc2c8b97ef5a4f4205eee51029155164b8a.

Instead of a boolean field that determines whether namespace sandboxes
are on, the namespace sandbox is now an enum within "Layer 1 Sandbox".

I've modified the regular expressions accordingly and also ran the test
for the stable branch, which now succeeds.

Signed-off-by: aszlig <aszlig@nix.build>
Issue: https://github.com/NixOS/nixpkgs/issues/49442
Cc: @bendlas, @andir
---
 nixos/tests/chromium.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/nixos/tests/chromium.nix b/nixos/tests/chromium.nix
index fcc55a59a216..e5097609fb27 100644
--- a/nixos/tests/chromium.nix
+++ b/nixos/tests/chromium.nix
@@ -168,7 +168,7 @@ mapAttrs (channel: chromiumPkg: makeTest rec {
 
       my $clipboard = $machine->succeed(ru "${pkgs.xclip}/bin/xclip -o");
       die "sandbox not working properly: $clipboard"
-      unless $clipboard =~ /namespace sandbox.*yes/mi
+      unless $clipboard =~ /layer 1 sandbox.*namespace/mi
           && $clipboard =~ /pid namespaces.*yes/mi
           && $clipboard =~ /network namespaces.*yes/mi
           && $clipboard =~ /seccomp.*sandbox.*yes/mi
@@ -186,7 +186,7 @@ mapAttrs (channel: chromiumPkg: makeTest rec {
 
       my $clipboard = $machine->succeed(ru "${pkgs.xclip}/bin/xclip -o");
       die "copying twice in a row does not work properly: $clipboard"
-      unless $clipboard =~ /namespace sandbox.*yes/mi
+      unless $clipboard =~ /layer 1 sandbox.*namespace/mi
           && $clipboard =~ /pid namespaces.*yes/mi
           && $clipboard =~ /network namespaces.*yes/mi
           && $clipboard =~ /seccomp.*sandbox.*yes/mi

From 7bd88054088149bebe4d2a63b182fe33d42556e1 Mon Sep 17 00:00:00 2001
From: ikarulus <github.ikarulus@zer.one>
Date: Fri, 2 Nov 2018 10:32:32 +0100
Subject: [PATCH 0314/1129] kicad 5.0.0 -> 5.0.1 (#49561)

---
 pkgs/applications/science/electronics/kicad/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/science/electronics/kicad/default.nix b/pkgs/applications/science/electronics/kicad/default.nix
index c92da3eeb292..5d0165eb6dda 100644
--- a/pkgs/applications/science/electronics/kicad/default.nix
+++ b/pkgs/applications/science/electronics/kicad/default.nix
@@ -13,11 +13,11 @@ with lib;
 stdenv.mkDerivation rec {
   name = "kicad-${version}";
   series = "5.0";
-  version = "5.0.0";
+  version = "5.0.1";
 
   src = fetchurl {
     url = "https://launchpad.net/kicad/${series}/${version}/+download/kicad-${version}.tar.xz";
-    sha256 = "17nqjszyvd25wi6550j981whlnb1wxzmlanljdjihiki53j84x9p";
+    sha256 = "0skig2wdxxc2677m8a8m1xrg3pkhqiqnmkcyr2hv0b2j30rzdr2z";
   };
 
   postPatch = ''

From 1ccafe56f9b5bf967a30ad47b5ac947264cb0c4b Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Fri, 2 Nov 2018 18:12:07 +0800
Subject: [PATCH 0315/1129] pythonPackages.broadlink: init at 0.9

---
 .../python-modules/broadlink/default.nix      | 28 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 30 insertions(+)
 create mode 100644 pkgs/development/python-modules/broadlink/default.nix

diff --git a/pkgs/development/python-modules/broadlink/default.nix b/pkgs/development/python-modules/broadlink/default.nix
new file mode 100644
index 000000000000..d1ecddded776
--- /dev/null
+++ b/pkgs/development/python-modules/broadlink/default.nix
@@ -0,0 +1,28 @@
+{ lib, fetchPypi, buildPythonPackage
+, pyaes, pycrc }:
+
+buildPythonPackage rec {
+  pname = "broadlink";
+  version = "0.9";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "10dnd859yjh1h6qrxhvkslbsj5fh5g654xsq2yqblkkv3xd711rs";
+  };
+
+  postPatch = ''
+    substituteInPlace setup.py \
+      --replace pyaes==1.6.0 pyaes
+    '';
+
+  propagatedBuildInputs = [ pyaes pycrc ];
+
+  # no tests available
+  doCheck = false;
+
+  meta = with lib; {
+    description = "Python API for controlling Broadlink IR controllers";
+    homepage =  http://github.com/mjg59/python-broadlink;
+    license = licenses.mit;
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 6c5870b529c1..f8b6990ce836 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -260,6 +260,8 @@ in {
 
   brotli = callPackage ../development/python-modules/brotli { };
 
+  broadlink = callPackage ../development/python-modules/broadlink { };
+
   browser-cookie3 = callPackage ../development/python-modules/browser-cookie3 { };
 
   browsermob-proxy = disabledIf isPy3k (callPackage ../development/python-modules/browsermob-proxy {});

From f8a415f793c5caa1f4469e84810fd33407a2e376 Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Fri, 2 Nov 2018 18:12:19 +0800
Subject: [PATCH 0316/1129] home-assistant: make broadlink module available

---
 pkgs/servers/home-assistant/component-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/home-assistant/component-packages.nix b/pkgs/servers/home-assistant/component-packages.nix
index f1ee1eda95da..2a701dc870d5 100644
--- a/pkgs/servers/home-assistant/component-packages.nix
+++ b/pkgs/servers/home-assistant/component-packages.nix
@@ -851,7 +851,7 @@
     "sensor.bme680" = ps: with ps; [  ];
     "sensor.bmw_connected_drive" = ps: with ps; [  ];
     "sensor.bom" = ps: with ps; [  ];
-    "sensor.broadlink" = ps: with ps; [  ];
+    "sensor.broadlink" = ps: with ps; [ broadlink ];
     "sensor.buienradar" = ps: with ps; [  ];
     "sensor.canary" = ps: with ps; [  ];
     "sensor.cert_expiry" = ps: with ps; [  ];
@@ -1139,7 +1139,7 @@
     "switch.arduino" = ps: with ps; [  ];
     "switch.arest" = ps: with ps; [  ];
     "switch.bbb_gpio" = ps: with ps; [  ];
-    "switch.broadlink" = ps: with ps; [  ];
+    "switch.broadlink" = ps: with ps; [ broadlink ];
     "switch.command_line" = ps: with ps; [  ];
     "switch.deconz" = ps: with ps; [  ];
     "switch.deluge" = ps: with ps; [ deluge-client ];

From 91ce8c050fdc1bd3fb29caa54cade79adb04979d Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Fri, 2 Nov 2018 06:42:05 -0500
Subject: [PATCH 0317/1129] pyre: 0.0.14 -> 0.0.17

---
 pkgs/development/tools/pyre/default.nix | 43 +++++++++----------------
 1 file changed, 15 insertions(+), 28 deletions(-)

diff --git a/pkgs/development/tools/pyre/default.nix b/pkgs/development/tools/pyre/default.nix
index a0ea5f59f255..382e733cb98b 100644
--- a/pkgs/development/tools/pyre/default.nix
+++ b/pkgs/development/tools/pyre/default.nix
@@ -3,7 +3,13 @@
 let
   # Manually set version - the setup script requires
   # hg and git + keeping the .git directory around.
-  pyre-version = "0.0.14";
+  pyre-version = "0.0.17";  # also change typeshed revision below with $pyre-src/.typeshed-version
+  pyre-src = fetchFromGitHub {
+    owner = "facebook";
+    repo = "pyre-check";
+    rev = "v${pyre-version}";
+    sha256 = "0y86a3g5xbgh0byksyx5jw7yq7w840x85dhz9inz6mkg5j06mcis";
+  };
   versionFile = writeScript "version.ml" ''
     cat > "./version.ml" <<EOF
     open Core
@@ -20,12 +26,7 @@ let
  pyre-bin = stdenv.mkDerivation {
   name = "pyre-${pyre-version}";
 
-  src = fetchFromGitHub {
-    owner = "facebook";
-    repo = "pyre-check";
-    rev = "v${pyre-version}";
-    sha256 = "0c8xzaa3ljqb6llr041sydw0l4xqn7x21nw9vaymdxh35nx9bp2v";
-  };
+  src = pyre-src;
 
   nativeBuildInputs = [ makeWrapper ];
 
@@ -49,7 +50,6 @@ let
     export HOME=.
 
     # "external" because https://github.com/facebook/pyre-check/pull/8/files
-    cp Makefile.template Makefile
     sed "s/%VERSION%/external/" dune.in > dune
 
     cp ${versionFile} ./scripts/generate-version-number.sh
@@ -83,14 +83,12 @@ let
 };
 typeshed = stdenv.mkDerivation {
   name = "typeshed";
-  # typeshed doesn't have versions, it seems to be synchronized with
-  # mypy relases. I'm assigning a random version here (same as pyre).
   version = pyre-version;
   src = fetchFromGitHub {
     owner = "python";
     repo = "typeshed";
-    rev = "a08c6ea";
-    sha256 = "0wy8yh43vhyyc4g7iqnmlj66kz5in02y5qc0c4jdckhpa3mchaqk";
+    rev = "bc3f9fe1d3c43b00c04cedb23e0eeebc9e1734b6";
+    sha256 = "06b2kj4n49h4sgi8hn5kalmir8llhanfdc7f1924cxvrkj5ry94b";
   };
   phases = [ "unpackPhase" "installPhase" ];
   installPhase = "cp -r $src $out";
@@ -98,19 +96,8 @@ typeshed = stdenv.mkDerivation {
 in python3.pkgs.buildPythonApplication rec {
   pname = "pyre-check";
   version = pyre-version;
-  src = fetchFromGitHub {
-    owner = "facebook";
-    repo = "pyre-check";
-    rev = "v${pyre-version}";
-    sha256 = "0ig7bx2kfn2kbxw74wysh5365yp5gyby42l9l29iclrzdghgk32l";
-  };
-  patches = [
-    (fetchpatch {
-      url = "https://github.com/facebook/pyre-check/commit/b473d2ed9fc11e7c1cd0c7b8c42f521e5cdc2003.patch";
-      sha256 = "05xvyp7j4n6z92bxf64rxfq5pvaadxgx1c8c5qziy75vdz72lkcy";
-    })
-    ./pyre-bdist-wheel.patch
-  ];
+  src = pyre-src;
+  patches = [ ./pyre-bdist-wheel.patch ];
 
   # The build-pypi-package script does some funky stuff with build
   # directories - easier to patch it a bit than to replace it
@@ -119,21 +106,21 @@ in python3.pkgs.buildPythonApplication rec {
     mkdir ./build
     substituteInPlace scripts/build-pypi-package.sh \
         --replace 'NIX_BINARY_FILE' '${pyre-bin}/bin/pyre.bin' \
-        --replace 'BUILD_ROOT="$(mktemp -d)"' "BUILD_ROOT=$(pwd)/build"
+        --replace 'BUILD_ROOT="$(mktemp -d)"' "BUILD_ROOT=$PWD/build"
     substituteInPlace client/buck.py \
         --replace '"buck"' '"${buck}/bin/buck"'
     substituteInPlace client/tests/buck_test.py \
         --replace '"buck"' '"${buck}/bin/buck"'
   '';
 
-  buildInputs = [ pyre-bin rsync ];
+  buildInputs = [ pyre-bin ];
+  nativeBuildInputs = [ rsync ]; # only required for build-pypi-package.sh
   propagatedBuildInputs = with python3.pkgs; [ docutils typeshed ];
   buildPhase = ''
     bash scripts/build-pypi-package.sh --version ${pyre-version} --bundle-typeshed ${typeshed}
     cp -r build/dist dist
   '';
   checkPhase = ''
-    sed -i 's/which python3/command -v python3/g' scripts/run-python-tests.sh
     bash scripts/run-python-tests.sh
   '';
 }

From 4f8cac02c6d468abf0d57245fc624ad6e26c245a Mon Sep 17 00:00:00 2001
From: "Tristan Helmich (omniIT)" <tristan.helmich@omniit.de>
Date: Wed, 31 Oct 2018 20:25:30 +0100
Subject: [PATCH 0318/1129] simgrid: 3.20 -> 3.21

---
 pkgs/applications/science/misc/simgrid/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/science/misc/simgrid/default.nix b/pkgs/applications/science/misc/simgrid/default.nix
index b6cd8c294c1b..258073e4080b 100644
--- a/pkgs/applications/science/misc/simgrid/default.nix
+++ b/pkgs/applications/science/misc/simgrid/default.nix
@@ -18,13 +18,13 @@ in
 
 stdenv.mkDerivation rec {
   name = "simgrid-${version}";
-  version = "3.20";
+  version = "3.21";
 
   src = fetchFromGitHub {
     owner = "simgrid";
     repo = "simgrid";
-    rev = "v${version}";
-    sha256 = "0xb20qhvsah2dz2hvn850i3w9a5ghsbcx8vka2ap6xsdkxf593gy";
+    rev = "v${replaceChars ["."] ["_"] version}";
+    sha256 = "1v0dwlww2wl56ms8lvg5zwffzbmz3sjzpkqc73f714mrc9g02bxs";
   };
 
   nativeBuildInputs = [ cmake perl python3 boost valgrind ]
@@ -107,6 +107,6 @@ stdenv.mkDerivation rec {
     homepage = http://simgrid.gforge.inria.fr/;
     license = licenses.lgpl2Plus;
     maintainers = with maintainers; [ mickours ];
-    platforms = platforms.x86_64;
+    platforms = ["x86_64-linux"];
   };
 }

From 87e4e1ba72dafd0ea1208cd959d047c04612b4aa Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Vladim=C3=ADr=20=C4=8Cun=C3=A1t?= <vcunat@gmail.com>
Date: Fri, 2 Nov 2018 14:33:55 +0100
Subject: [PATCH 0319/1129] Revert "c-ares: 1.14.0 -> 1.15.0"

This reverts commit 5ace2703096f16fa924072f3743d6eaac35bec32.
It's a mass rebuild, moving to staging.
---
 pkgs/development/libraries/c-ares/default.nix | 15 ++++++++++++---
 1 file changed, 12 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/libraries/c-ares/default.nix b/pkgs/development/libraries/c-ares/default.nix
index efe7a5820b53..099d02c82639 100644
--- a/pkgs/development/libraries/c-ares/default.nix
+++ b/pkgs/development/libraries/c-ares/default.nix
@@ -2,14 +2,23 @@
 
 let self =
 stdenv.mkDerivation rec {
-  name = "c-ares-1.15.0";
+  name = "c-ares-1.14.0";
 
   src = fetchurl {
     url = "https://c-ares.haxx.se/download/${name}.tar.gz";
-    sha256 = "0lk8knip4xk6qzksdkn7085mmgm4ixfczdyyjw656c193y3rgnvc";
+    sha256 = "0vnwmbvymw677k780kpb6sb8i3szdp89rzy8mz1fwg1657yw3ls5";
   };
 
-  configureFlags = stdenv.lib.optionals stdenv.hostPlatform.isWindows [ "--disable-shared" "--enable-static" ];
+  configureFlags = if stdenv.hostPlatform.isWindows then [ "--disable-shared" "--enable-static" ] else null;
+
+  # ares_android.h header is missing
+  # see issue https://github.com/c-ares/c-ares/issues/216
+  postPatch = if stdenv.hostPlatform.isAndroid then ''
+    cp ${fetchurl {
+      url = "https://raw.githubusercontent.com/c-ares/c-ares/cares-1_14_0/ares_android.h";
+      sha256 = "1aw8y6r5c8zq6grjwf4mcm2jj35r5kgdklrp296214s1f1827ps8";
+    }} ares_android.h
+  '' else null;
 
   meta = with stdenv.lib; {
     description = "A C library for asynchronous DNS requests";

From 0607adde1a5d4c933986c6a7a169c44ee9ef3469 Mon Sep 17 00:00:00 2001
From: Vincent Weisner <vincentweisner@icloud.com>
Date: Fri, 2 Nov 2018 09:38:47 -0400
Subject: [PATCH 0320/1129] Update parse.nix

---
 lib/systems/parse.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/lib/systems/parse.nix b/lib/systems/parse.nix
index 2bf6d6947701..be73a6d252f0 100644
--- a/lib/systems/parse.nix
+++ b/lib/systems/parse.nix
@@ -104,7 +104,7 @@ rec {
     wasm32   = { bits = 32; significantByte = littleEndian; family = "wasm"; };
     wasm64   = { bits = 64; significantByte = littleEndian; family = "wasm"; };
     
-    alpha    = { bits = 64; significantBye = littleEndian; family = "alpha"; };
+    alpha    = { bits = 64; significantByte = littleEndian; family = "alpha"; };
 
     avr      = { bits = 8; family = "avr"; };
   };

From 93aa285376daea647df6d95c50622230d118fd01 Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Tue, 23 Oct 2018 15:49:42 -0500
Subject: [PATCH 0321/1129] nixos: fix #48917 by setting
 SYSTEMD_TIMEDATED_NTP_SERVICES

Setting this variable in the environment of systemd-timedated allows
'timedatectl' to tell if an NTP service is running.

Closes #48917.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 nixos/modules/services/networking/chrony.nix | 2 ++
 nixos/modules/services/networking/ntpd.nix   | 2 ++
 2 files changed, 4 insertions(+)

diff --git a/nixos/modules/services/networking/chrony.nix b/nixos/modules/services/networking/chrony.nix
index a363b545d649..9b8005e706ae 100644
--- a/nixos/modules/services/networking/chrony.nix
+++ b/nixos/modules/services/networking/chrony.nix
@@ -93,6 +93,8 @@ in
 
     services.timesyncd.enable = mkForce false;
 
+    systemd.services.systemd-timedated.environment = { SYSTEMD_TIMEDATED_NTP_SERVICES = "chronyd.service"; };
+
     systemd.services.chronyd =
       { description = "chrony NTP daemon";
 
diff --git a/nixos/modules/services/networking/ntpd.nix b/nixos/modules/services/networking/ntpd.nix
index 342350d49ab3..32174100b0f7 100644
--- a/nixos/modules/services/networking/ntpd.nix
+++ b/nixos/modules/services/networking/ntpd.nix
@@ -67,6 +67,8 @@ in
     environment.systemPackages = [ pkgs.ntp ];
     services.timesyncd.enable = mkForce false;
 
+    systemd.services.systemd-timedated.environment = { SYSTEMD_TIMEDATED_NTP_SERVICES = "ntpd.service"; };
+
     users.users = singleton
       { name = ntpUser;
         uid = config.ids.uids.ntp;

From 6a0e8c27380340751cc492b02b4efb1c83baf053 Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Fri, 2 Nov 2018 09:26:42 -0500
Subject: [PATCH 0322/1129] .github/CODEOWNERS: add myself as the PostgreSQL
 owner

Since the development of #38698, I have been radically overhauling the
PostgreSQL support and plan on maintaining it in the long run, taking
over from @ocharles, who authored most of it initially.

However, while #38698 has not been merged (yet), I'm taking the time to
go ahead and add myself as the owner of all the related code, so that I
can be marked as a reviewer for things people submit in the mean time.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 .github/CODEOWNERS | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/.github/CODEOWNERS b/.github/CODEOWNERS
index 76fb19529b03..f222af230bb1 100644
--- a/.github/CODEOWNERS
+++ b/.github/CODEOWNERS
@@ -97,3 +97,9 @@
 /pkgs/desktops/plasma-5 @ttuegel
 /pkgs/development/libraries/kde-frameworks @ttuegel
 /pkgs/development/libraries/qt-5 @ttuegel
+
+# PostgreSQL and related stuff
+/pkgs/servers/sql/postgresql @thoughtpolice
+/nixos/modules/services/databases/postgresql.xml @thoughtpolice
+/nixos/modules/services/databases/postgresql.nix @thoughtpolice
+/nixos/tests/postgresql.nix @thoughtpolice

From 06acfb853fb6598237b944bb129da66593f228e6 Mon Sep 17 00:00:00 2001
From: talyz <kim.lindberger@gmail.com>
Date: Sat, 27 Oct 2018 10:38:47 +0200
Subject: [PATCH 0323/1129] nomachine-client: init at 6.3.6_1

Packages mainly the nxplayer part of the client, since the tray
doesn't work very well without the server / a complete installation.

Use the shipped libs, since nxplayer really doesn't like any others. I
believe they use internally modified versions of many libs.

Audio doesn't work: the libasound.so shipped looks for the alsa config
files in the wrong place, and even if it finds them, it still doesn't
work. Using the one from alsaLib doesn't work either and adds
instability.
---
 maintainers/maintainer-list.nix               |  5 ++
 pkgs/tools/admin/nomachine-client/default.nix | 83 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 3 files changed, 90 insertions(+)
 create mode 100644 pkgs/tools/admin/nomachine-client/default.nix

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index 22ea07b9f118..f04e02bb1c79 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -4143,6 +4143,11 @@
     github = "taku0";
     name = "Takuo Yonezawa";
   };
+  talyz = {
+    email = "kim.lindberger@gmail.com";
+    github = "talyz";
+    name = "Kim Lindberger";
+  };
   tari = {
     email = "peter@taricorp.net";
     github = "tari";
diff --git a/pkgs/tools/admin/nomachine-client/default.nix b/pkgs/tools/admin/nomachine-client/default.nix
new file mode 100644
index 000000000000..be616c1bf9e0
--- /dev/null
+++ b/pkgs/tools/admin/nomachine-client/default.nix
@@ -0,0 +1,83 @@
+{ stdenv, lib, file, fetchurl, makeWrapper, autoPatchelfHook, jsoncpp }:
+let
+  versionMajor = "6.3";
+  versionMinor = "6_1";
+in
+  stdenv.mkDerivation rec {
+    name = "nomachine-client-${version}";
+    version = "${versionMajor}.${versionMinor}";
+  
+    src =
+      if stdenv.hostPlatform.system == "x86_64-linux" then
+        fetchurl {
+          url = "https://download.nomachine.com/download/${versionMajor}/Linux/nomachine_${version}_x86_64.tar.gz";
+          sha256 = "1035j2z2rqmdfb8cfm1pakd05c575640604b8lkljmilpky9mw5d";
+        }
+      else if stdenv.hostPlatform.system == "i686-linux" then
+        fetchurl {
+          url = "https://download.nomachine.com/download/${versionMajor}/Linux/nomachine_${version}_i686.tar.gz";
+          sha256 = "07j9f6mlq9m01ch8ik5dybi283vrp5dlv156jr5n7n2chzk34kf3";
+        }
+      else
+        throw "NoMachine client is not supported on ${stdenv.hostPlatform.system}";
+    
+    postUnpack = ''
+      mv $(find . -type f -name nxclient.tar.gz) .
+      mv $(find . -type f -name nxplayer.tar.gz) .
+      rm -r NX/
+      tar xf nxclient.tar.gz
+      tar xf nxplayer.tar.gz
+      rm $(find . -maxdepth 1 -type f)
+    '';
+  
+    nativeBuildInputs = [ file makeWrapper autoPatchelfHook ];
+    buildInputs = [ jsoncpp ];
+
+    installPhase = ''
+      rm bin/nxplayer bin/nxclient
+
+      mkdir -p $out/NX
+      cp -r bin lib share $out/NX/
+
+      ln -s $out/NX/bin $out/bin
+
+      for i in share/icons/*; do
+        if [[ -d "$i" ]]; then
+          mkdir -p "$out/share/icons/hicolor/$(basename $i)/apps"
+          cp "$i"/* "$out/share/icons/hicolor/$(basename $i)/apps/"
+        fi
+      done
+  
+      mkdir $out/share/applications
+      cp share/applnk/player/xdg/*.desktop $out/share/applications/
+      cp share/applnk/client/xdg-mime/*.desktop $out/share/applications/
+
+      mkdir -p $out/share/mime/packages
+      cp share/applnk/client/xdg-mime/*.xml $out/share/mime/packages/
+
+      for i in $out/share/applications/*.desktop; do
+        substituteInPlace "$i" --replace /usr/NX/bin $out/bin
+      done
+    '';
+  
+    postFixup = ''
+      makeWrapper $out/bin/nxplayer.bin $out/bin/nxplayer --set NX_SYSTEM $out/NX
+      makeWrapper $out/bin/nxclient.bin $out/bin/nxclient --set NX_SYSTEM $out/NX
+    '';
+  
+    dontBuild = true;
+    dontStrip = true;
+
+    meta = with stdenv.lib; {
+      description = "NoMachine remote desktop client (nxplayer)";
+      homepage = https://www.nomachine.com/;
+      license = {
+        fullName = "NoMachine 6 End-User License Agreement";
+        url = https://www.nomachine.com/licensing-6;
+        free = false;
+      };
+      maintainers = with maintainers; [ talyz ];
+      platforms = [ "x86_64-linux" "i686-linux" ];
+    };
+  }
+  
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 57f65c28deb2..99b95e7345a9 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -4362,6 +4362,8 @@ with pkgs;
 
   nms = callPackage ../tools/misc/nms { };
 
+  nomachine-client = callPackage ../tools/admin/nomachine-client { };
+
   notify-desktop = callPackage ../tools/misc/notify-desktop {};
 
   nkf = callPackage ../tools/text/nkf {};

From 1fe3328593e555668d38e4d48929bbea8b6f911e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Vladim=C3=ADr=20=C4=8Cun=C3=A1t?= <vcunat@gmail.com>
Date: Fri, 2 Nov 2018 16:46:03 +0100
Subject: [PATCH 0324/1129] knot-resolver: 3.0.0 -> 3.1.0

https://lists.nic.cz/pipermail/knot-resolver-users/2018/000086.html
---
 pkgs/servers/dns/knot-resolver/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/dns/knot-resolver/default.nix b/pkgs/servers/dns/knot-resolver/default.nix
index b760b080ab78..ceefa542e6a4 100644
--- a/pkgs/servers/dns/knot-resolver/default.nix
+++ b/pkgs/servers/dns/knot-resolver/default.nix
@@ -12,11 +12,11 @@ inherit (stdenv.lib) optional concatStringsSep;
 
 unwrapped = stdenv.mkDerivation rec {
   name = "knot-resolver-${version}";
-  version = "3.0.0";
+  version = "3.1.0";
 
   src = fetchurl {
     url = "https://secure.nic.cz/files/knot-resolver/${name}.tar.xz";
-    sha256 = "68a0137e0e15061ee7dec53a2e424aa3266611720db3843853c6e7774a414f40";
+    sha256 = "8f3deba4695784a666cde317bc6af80ecf42ce1047b01f4b9c582fdc021c7492";
   };
 
   outputs = [ "out" "dev" ];

From 8cf1e97fcf8db2a4f8a4a3d2e52fc49b4e0c5ade Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Fri, 2 Nov 2018 12:44:05 -0400
Subject: [PATCH 0325/1129] granite: 5.1.0 -> 5.2.0

- Correct License to LGPLv3+
---
 .../development/libraries/granite/default.nix | 21 ++++++++++++-------
 1 file changed, 13 insertions(+), 8 deletions(-)

diff --git a/pkgs/development/libraries/granite/default.nix b/pkgs/development/libraries/granite/default.nix
index 1ee0970ffad2..6892ea6364d7 100644
--- a/pkgs/development/libraries/granite/default.nix
+++ b/pkgs/development/libraries/granite/default.nix
@@ -1,12 +1,14 @@
-{ stdenv, fetchFromGitHub, perl, cmake, ninja, vala_0_40, pkgconfig, gobjectIntrospection, glib, gtk3, gnome3, gettext }:
+{ stdenv, fetchFromGitHub, cmake, ninja, vala_0_40, pkgconfig, gobjectIntrospection, gnome3, gtk3, glib, gettext }:
 
 stdenv.mkDerivation rec {
-  name = "granite-${version}";
-  version = "5.1.0";
+  pname = "granite";
+  version = "5.2.0";
+
+  name = "${pname}-${version}";
 
   src = fetchFromGitHub {
     owner = "elementary";
-    repo = "granite";
+    repo = pname;
     rev = version;
     sha256 = "1v1yhz6rp616xi417m9r8072s6mpz5i8vkdyj264b73p0lgjwh40";
   };
@@ -21,10 +23,10 @@ stdenv.mkDerivation rec {
     gettext
     gobjectIntrospection
     ninja
-    perl
     pkgconfig
-    vala_0_40
+    vala_0_40 # should be `elementary.vala` when elementary attribute set is merged
   ];
+
   buildInputs = [
     glib
     gnome3.libgee
@@ -33,9 +35,12 @@ stdenv.mkDerivation rec {
 
   meta = with stdenv.lib; {
     description = "An extension to GTK+ used by elementary OS";
-    longDescription = "An extension to GTK+ that provides several useful widgets and classes to ease application development. Designed for elementary OS.";
+    longDescription = ''
+      Granite is a companion library for GTK+ and GLib. Among other things, it provides complex widgets and convenience functions
+      designed for use in apps built for elementary OS.
+    '';
     homepage = https://github.com/elementary/granite;
-    license = licenses.lgpl3;
+    license = licenses.lgpl3Plus;
     platforms = platforms.linux;
     maintainers = with maintainers; [ vozz worldofpeace ];
   };

From cac5c9401e7d17db94bf5c0b6e0df9e38e497cc8 Mon Sep 17 00:00:00 2001
From: Tom McLaughlin <pyro777@gmail.com>
Date: Mon, 29 Oct 2018 16:24:56 -0700
Subject: [PATCH 0326/1129] R: update CRAN and BIOC package sets

Closes https://github.com/NixOS/nixpkgs/pull/49430.
---
 .../r-modules/bioc-annotation-packages.nix    |  298 +-
 .../r-modules/bioc-experiment-packages.nix    |  164 +-
 pkgs/development/r-modules/bioc-packages.nix  | 1539 +++---
 pkgs/development/r-modules/cran-packages.nix  | 4902 +++++++++--------
 pkgs/development/r-modules/default.nix        |    6 -
 5 files changed, 3806 insertions(+), 3103 deletions(-)

diff --git a/pkgs/development/r-modules/bioc-annotation-packages.nix b/pkgs/development/r-modules/bioc-annotation-packages.nix
index 54c4968607df..863d7c9fcfe0 100644
--- a/pkgs/development/r-modules/bioc-annotation-packages.nix
+++ b/pkgs/development/r-modules/bioc-annotation-packages.nix
@@ -7,11 +7,12 @@
 let derive2 = derive { biocVersion = "3.8"; };
 in with self; {
   AHCytoBands = derive2 { name="AHCytoBands"; version="0.99.0"; sha256="0g92nz33rx14zl5can7s701bipdgz7rxqygvvc22c4a0qj52ijnq"; depends=[]; };
-  AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.0.6"; sha256="1sdxj2rxhc2cj2rgfif2flnic57zkdrhdvhr3y64amcmrp57xgj4"; depends=[AnnotationHubData ensembldb]; };
+  AHEnsDbs = derive2 { name="AHEnsDbs"; version="1.0.8"; sha256="1v1177l4y0l546mzp8ybhvhnjwrsck5bkic8w6n6n2xq07d6aahz"; depends=[AnnotationHubData ensembldb]; };
   BSgenome_Alyrata_JGI_v1 = derive2 { name="BSgenome.Alyrata.JGI.v1"; version="1.0.0"; sha256="06549kkzy36n378zb61lrf9zardncp7i20r73rmmiq1pnfjp3gww"; depends=[BSgenome]; };
   BSgenome_Amellifera_BeeBase_assembly4 = derive2 { name="BSgenome.Amellifera.BeeBase.assembly4"; version="1.4.0"; sha256="02zs16q441zcbfp7xvv1gny5nn02ivfr8md1wh5s5rpnj6sdl6kj"; depends=[BSgenome]; };
   BSgenome_Amellifera_UCSC_apiMel2 = derive2 { name="BSgenome.Amellifera.UCSC.apiMel2"; version="1.4.0"; sha256="1967w7aly7qydykk7rar712kvgsav3zjr4kirybkj17nwiynd74g"; depends=[BSgenome]; };
   BSgenome_Amellifera_UCSC_apiMel2_masked = derive2 { name="BSgenome.Amellifera.UCSC.apiMel2.masked"; version="1.3.99"; sha256="128jmpnpbz1afqvhvdc9vrc8gmlyg26ca7qz362qsx89jrm4khpr"; depends=[BSgenome BSgenome_Amellifera_UCSC_apiMel2]; };
+  BSgenome_Aofficinalis_NCBI_V1 = derive2 { name="BSgenome.Aofficinalis.NCBI.V1"; version="1.0.0"; sha256="0n6m5jnpiz6bv46b7s396qkxha2d8271j747j50v2zb6a7wd0rjr"; depends=[BSgenome]; };
   BSgenome_Athaliana_TAIR_04232008 = derive2 { name="BSgenome.Athaliana.TAIR.04232008"; version="1.3.1000"; sha256="0dsbjfh2yf0v3zmbypn9p3alvwhfw2qyr5vivyj7x9ablylb6qxc"; depends=[BSgenome]; };
   BSgenome_Athaliana_TAIR_TAIR9 = derive2 { name="BSgenome.Athaliana.TAIR.TAIR9"; version="1.3.1000"; sha256="0n45sn80c5nchfj1wzbcaicfyg66id2zhr5xm3w238idkbj05l00"; depends=[BSgenome]; };
   BSgenome_Btaurus_UCSC_bosTau3 = derive2 { name="BSgenome.Btaurus.UCSC.bosTau3"; version="1.4.0"; sha256="0vh3664q7pynfw763pwg2h74h0ncmi5nslvj7y5bj1q7pvf03zpc"; depends=[BSgenome]; };
@@ -21,6 +22,7 @@ in with self; {
   BSgenome_Btaurus_UCSC_bosTau6 = derive2 { name="BSgenome.Btaurus.UCSC.bosTau6"; version="1.4.0"; sha256="0waaf9wfmdl5jbi3la64vsiqb83lyw9fqg3sn90bf1q7k3k617p3"; depends=[BSgenome]; };
   BSgenome_Btaurus_UCSC_bosTau6_masked = derive2 { name="BSgenome.Btaurus.UCSC.bosTau6.masked"; version="1.3.99"; sha256="07isv0lcvlsl0aha1p474l0pps0j7bsh455m33vfxwahivqsfy27"; depends=[BSgenome BSgenome_Btaurus_UCSC_bosTau6]; };
   BSgenome_Btaurus_UCSC_bosTau8 = derive2 { name="BSgenome.Btaurus.UCSC.bosTau8"; version="1.4.2"; sha256="16wjy1aw9nvx03r7w8yh5w7sw3pn8i9nczd0n0728l6nnyqxlsz6"; depends=[BSgenome]; };
+  BSgenome_Carietinum_NCBI_v1 = derive2 { name="BSgenome.Carietinum.NCBI.v1"; version="1.0.0"; sha256="1asyyb1p1bzc7dv9s2igjxrf9f144vvz2xbv9qxg15w9qzzx7r33"; depends=[BSgenome]; };
   BSgenome_Celegans_UCSC_ce10 = derive2 { name="BSgenome.Celegans.UCSC.ce10"; version="1.4.0"; sha256="1zaym97jk4npxk14ifvwz2rvhm4zx9xgs33r9vvx9rlynp0gydrk"; depends=[BSgenome]; };
   BSgenome_Celegans_UCSC_ce11 = derive2 { name="BSgenome.Celegans.UCSC.ce11"; version="1.4.2"; sha256="0d4bxfglpqiv1f0n6imdgz101g9383hfj3ra91268wryzlm0yk5w"; depends=[BSgenome]; };
   BSgenome_Celegans_UCSC_ce2 = derive2 { name="BSgenome.Celegans.UCSC.ce2"; version="1.4.0"; sha256="1x7nvisz7mjrpqlsiw4an04f8hksygzn96p5ld0388hljg78dax8"; depends=[BSgenome]; };
@@ -78,6 +80,7 @@ in with self; {
   BSgenome_Ptroglodytes_UCSC_panTro3 = derive2 { name="BSgenome.Ptroglodytes.UCSC.panTro3"; version="1.4.0"; sha256="1vbfx0zrj4rcwcsm1q09xdiv0mmrycj8223lnxqb8nr5r017f7gm"; depends=[BSgenome]; };
   BSgenome_Ptroglodytes_UCSC_panTro3_masked = derive2 { name="BSgenome.Ptroglodytes.UCSC.panTro3.masked"; version="1.3.99"; sha256="18ga0whdcp5zpigrmh68wjmn99lzvfyvgxjm58y0jx66rmg94mir"; depends=[BSgenome BSgenome_Ptroglodytes_UCSC_panTro3]; };
   BSgenome_Ptroglodytes_UCSC_panTro5 = derive2 { name="BSgenome.Ptroglodytes.UCSC.panTro5"; version="1.4.2"; sha256="0wxciajcyf0hr6g6zcji125jm18nnspwvnv5x3jibjvxzx55gcds"; depends=[BSgenome]; };
+  BSgenome_Ptroglodytes_UCSC_panTro6 = derive2 { name="BSgenome.Ptroglodytes.UCSC.panTro6"; version="1.4.2"; sha256="1l1fqnw1iqb2a7kvyvb0m1vdvq6cxs6py92yvbaf4zwklmgmdq0b"; depends=[BSgenome]; };
   BSgenome_Rnorvegicus_UCSC_rn4 = derive2 { name="BSgenome.Rnorvegicus.UCSC.rn4"; version="1.4.0"; sha256="1aww2bxyqbb81iln3vgrb0659r82v9yv1z41k9r3zws8b7k7df6x"; depends=[BSgenome]; };
   BSgenome_Rnorvegicus_UCSC_rn4_masked = derive2 { name="BSgenome.Rnorvegicus.UCSC.rn4.masked"; version="1.3.99"; sha256="0jfv1873ab1nwwdr18vrjqcdl4rhv3xgqbf4jfnjk7sjx154pfi6"; depends=[BSgenome BSgenome_Rnorvegicus_UCSC_rn4]; };
   BSgenome_Rnorvegicus_UCSC_rn5 = derive2 { name="BSgenome.Rnorvegicus.UCSC.rn5"; version="1.4.0"; sha256="1s92983m73bi08ihvyd8c17yx29hz5xxrnrs2if8fda4asw1f3f0"; depends=[BSgenome]; };
@@ -105,6 +108,7 @@ in with self; {
   EnsDb_Mmusculus_v79 = derive2 { name="EnsDb.Mmusculus.v79"; version="2.99.0"; sha256="1zpmq7v55if6q9r0h883q9k8l70ym20b01m9hxf121wb256rl9f7"; depends=[ensembldb]; };
   EnsDb_Rnorvegicus_v75 = derive2 { name="EnsDb.Rnorvegicus.v75"; version="2.99.0"; sha256="02sx9l1p67ihkn0dfzbi08cpp8x4k2mjdqn7hvzfiaibsbqp70bb"; depends=[ensembldb]; };
   EnsDb_Rnorvegicus_v79 = derive2 { name="EnsDb.Rnorvegicus.v79"; version="2.99.0"; sha256="1ki2hrn0a55f3ipxny0hpgl5ld9pjkhcwmvvqwwd99f3sqbxf3br"; depends=[ensembldb]; };
+  EuPathDB = derive2 { name="EuPathDB"; version="1.0.0"; sha256="08yl7zx5j6ywnrdcrrsvfkkxnvhrhrcddxw0g5sv90gy55zgv86n"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDbData GenomicRanges]; };
   FDb_FANTOM4_promoters_hg19 = derive2 { name="FDb.FANTOM4.promoters.hg19"; version="1.0.0"; sha256="04sn5x1r5fcbghzw6n1bvy0z8zyhrbk86wsqz1p5gk665vicz8rw"; depends=[AnnotationDbi Biostrings GenomicFeatures]; };
   FDb_InfiniumMethylation_hg18 = derive2 { name="FDb.InfiniumMethylation.hg18"; version="2.2.0"; sha256="0vwzqzj49imjdsn8ssiwqi7qic7rqw5pbsiinyxgy7y10fn2i42a"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg18_knownGene]; };
   FDb_InfiniumMethylation_hg19 = derive2 { name="FDb.InfiniumMethylation.hg19"; version="2.2.0"; sha256="0gq90fvph6kgrpjb89nvzq6hl1k24swn19rgjh5g98l86mja6nk0"; depends=[AnnotationDbi Biostrings GenomicFeatures org_Hs_eg_db TxDb_Hsapiens_UCSC_hg19_knownGene]; };
@@ -112,8 +116,8 @@ in with self; {
   FDb_UCSC_snp137common_hg19 = derive2 { name="FDb.UCSC.snp137common.hg19"; version="1.0.0"; sha256="1q1r7rk29q0zlzxz6fvfy1kjfli6wxzvhvhhfnf3z4ksy5332q63"; depends=[AnnotationDbi GenomicFeatures]; };
   FDb_UCSC_tRNAs = derive2 { name="FDb.UCSC.tRNAs"; version="1.0.1"; sha256="1dymdalx9fzrplxyc0fd9faa4r5jimi7zyry9k65lyz1pabpkwqz"; depends=[AnnotationDbi GenomicFeatures]; };
   GGHumanMethCancerPanelv1_db = derive2 { name="GGHumanMethCancerPanelv1.db"; version="1.4.1"; sha256="0ag1pkbh4mx4aplfrrz1q4f4cl05mczq9pcsfkd1071qk51dcwvx"; depends=[AnnotationDbi AnnotationForge org_Hs_eg_db]; };
-  GO_db = derive2 { name="GO.db"; version="3.6.0"; sha256="0fi2qywr9apg5lwfqfq9qq6bgrnv4rdhxx25656qn4bsy62i838j"; depends=[AnnotationDbi]; };
-  GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.1.0"; sha256="0k1hsjx6n2i1sf14hyrgdhxqxm5mxk0bgnivhiax944whcicmzbf"; depends=[]; };
+  GO_db = derive2 { name="GO.db"; version="3.7.0"; sha256="0i3wcf5h3n0dawzc1hy0kv74f06j80c47n4p3g3fmrcxlhi3jpa5"; depends=[AnnotationDbi]; };
+  GenomeInfoDbData = derive2 { name="GenomeInfoDbData"; version="1.2.0"; sha256="0di6nlqpsyqf693k2na65ayqldih563x3zfrczpqc5q2hl5kg35c"; depends=[]; };
   Homo_sapiens = derive2 { name="Homo.sapiens"; version="1.3.1"; sha256="151vj7h5p1c8yd5swrchk46z469p135wk50hvkl0nhgndvy0jj01"; depends=[AnnotationDbi GenomicFeatures GO_db org_Hs_eg_db OrganismDbi TxDb_Hsapiens_UCSC_hg19_knownGene]; };
   Hs6UG171_db = derive2 { name="Hs6UG171.db"; version="3.2.3"; sha256="034aady3hy8j9bm7pbl8l8h0gcfnzmpyxg9l9s1ky0pj7ryzr93a"; depends=[AnnotationDbi org_Hs_eg_db]; };
   HsAgilentDesign026652_db = derive2 { name="HsAgilentDesign026652.db"; version="3.2.3"; sha256="0x6nxvzmc8k4qp382ca32y58awkxpg0b3kc7m1mz9iag6sq7c5vx"; depends=[AnnotationDbi org_Hs_eg_db]; };
@@ -136,6 +140,18 @@ in with self; {
   JazaeriMetaData_db = derive2 { name="JazaeriMetaData.db"; version="3.2.3"; sha256="04lvcmm4ybxkfwgbiwcnpyj6kpbd0gd7jz6ijlbbvv6zdgdmvykb"; depends=[AnnotationDbi org_Hs_eg_db]; };
   KEGG_db = derive2 { name="KEGG.db"; version="3.2.3"; sha256="0qv9in1nmnqcbjxh0y45x33xyw9zdp4jf5hmlvcsh1pclcq4dsh2"; depends=[AnnotationDbi]; };
   LAPOINTE_db = derive2 { name="LAPOINTE.db"; version="3.2.3"; sha256="0960gy5p4ybs5zs6251cgc3nk5a9gsh1nh23gkbkr3gc8jddinfm"; depends=[AnnotationDbi org_Hs_eg_db]; };
+  LRBase_Ath_eg_db = derive2 { name="LRBase.Ath.eg.db"; version="0.99.1"; sha256="0v7zyp6mngdfrqgx0fb6lj0ara7q4ch2dahnwqjk5y9psmvi8m16"; depends=[LRBaseDbi RSQLite]; };
+  LRBase_Bta_eg_db = derive2 { name="LRBase.Bta.eg.db"; version="0.99.1"; sha256="14yl5d4vmm2hjrlxsflwvkw18j0kcz364b3mc3fnxzbk8phisy3l"; depends=[LRBaseDbi RSQLite]; };
+  LRBase_Cel_eg_db = derive2 { name="LRBase.Cel.eg.db"; version="0.99.1"; sha256="18w8ay874qjs4qgb3g1j77k2fspvvvbyy3p85wgzy1yl839ngy3b"; depends=[LRBaseDbi RSQLite]; };
+  LRBase_Dme_eg_db = derive2 { name="LRBase.Dme.eg.db"; version="0.99.1"; sha256="0qbc5942g57mjdlhqpnapwq58bmi5xbc0mrqbqkfbxpx881ka2v6"; depends=[LRBaseDbi RSQLite]; };
+  LRBase_Dre_eg_db = derive2 { name="LRBase.Dre.eg.db"; version="0.99.1"; sha256="0wpx9dg2nhw20f3vvmaqy5yip8xwg1niswspxs4jv9krd0z6h5d8"; depends=[LRBaseDbi RSQLite]; };
+  LRBase_Gga_eg_db = derive2 { name="LRBase.Gga.eg.db"; version="0.99.1"; sha256="0nycj3h69ca2gxxmc08zvf0jv5zylfayhd6sgzrmqz0zsr0n5fxk"; depends=[LRBaseDbi RSQLite]; };
+  LRBase_Hsa_eg_db = derive2 { name="LRBase.Hsa.eg.db"; version="0.99.1"; sha256="0g690d63sp5pb0i28zvi80y41n6b31mzza46invjvq9c1j2rijzd"; depends=[LRBaseDbi RSQLite]; };
+  LRBase_Mmu_eg_db = derive2 { name="LRBase.Mmu.eg.db"; version="0.99.1"; sha256="0kmd69a31hw8i2p8qg64m074ypa102cfa7qpyz2m7nr6gwb3ik3z"; depends=[LRBaseDbi RSQLite]; };
+  LRBase_Pab_eg_db = derive2 { name="LRBase.Pab.eg.db"; version="0.99.1"; sha256="0scycwpdmr6yvfyqsani1372pmyqxzvv30wsvy8hx3km7dcd4ypz"; depends=[LRBaseDbi RSQLite]; };
+  LRBase_Rno_eg_db = derive2 { name="LRBase.Rno.eg.db"; version="0.99.1"; sha256="1b5rzb9kpnak90fb55y380qmspd8gah3wxvsliv1lddab65m5ch3"; depends=[LRBaseDbi RSQLite]; };
+  LRBase_Ssc_eg_db = derive2 { name="LRBase.Ssc.eg.db"; version="0.99.1"; sha256="1p1crrh3wkinvhqmy9b1h4j9yfvwbsykhm6b0xlhn0kzdqxlizjf"; depends=[LRBaseDbi RSQLite]; };
+  LRBase_Xtr_eg_db = derive2 { name="LRBase.Xtr.eg.db"; version="0.99.1"; sha256="0aqzcll2ylzbbq42ns0hp7l9p6343l2qlsv5zkglla1bxdxl6m4h"; depends=[LRBaseDbi RSQLite]; };
   LowMACAAnnotation = derive2 { name="LowMACAAnnotation"; version="0.99.3"; sha256="0ri301ci54s8wwkah1jccy5h44xg8yjk08j5b15qmdsm25hli4wm"; depends=[]; };
   LymphoSeqDB = derive2 { name="LymphoSeqDB"; version="0.99.2"; sha256="1cdyn2imjh4zr23szndc4vwyiacxs1jsp14gil2dyq9aifa25qr7"; depends=[]; };
   MafDb_1Kgenomes_phase1_GRCh38 = derive2 { name="MafDb.1Kgenomes.phase1.GRCh38"; version="3.7.0"; sha256="160whyhwjspqji6ys19qgi4y3k7z1qqzr75nhpw0yl8h1rc6rfg0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
@@ -148,86 +164,91 @@ in with self; {
   MafDb_ExAC_r1_0_hs37d5 = derive2 { name="MafDb.ExAC.r1.0.hs37d5"; version="3.7.0"; sha256="00b022hzwr0l6m9wzw76iirdq5szvi5z8a9yi2i44sydhwqsb4cy"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
   MafDb_ExAC_r1_0_nonTCGA_GRCh38 = derive2 { name="MafDb.ExAC.r1.0.nonTCGA.GRCh38"; version="3.7.0"; sha256="1dvzzwj9dhrls8caabdcgddsk64a6q9jqcya424h8n48fkx6fpjn"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
   MafDb_ExAC_r1_0_nonTCGA_hs37d5 = derive2 { name="MafDb.ExAC.r1.0.nonTCGA.hs37d5"; version="3.7.0"; sha256="10rn7nqrnhmhdqcygi8l3cwf1385jyy56qzqjgqyhvmi4g8dnjsn"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
+  MafDb_TOPMed_freeze5_hg19 = derive2 { name="MafDb.TOPMed.freeze5.hg19"; version="3.7.1"; sha256="0a8rgh3lkbplg3y1yl0804f55dlw7v8lcb33ygg8kg39dk60m102"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
   MafDb_TOPMed_freeze5_hg38 = derive2 { name="MafDb.TOPMed.freeze5.hg38"; version="3.7.1"; sha256="1kxk3qqw1igkygqmj8yjl4cp99fan1w84gilh6q35nsaja0fapa8"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
+  MafDb_gnomAD_r2_0_1_GRCh38 = derive2 { name="MafDb.gnomAD.r2.0.1.GRCh38"; version="3.7.0"; sha256="0dp82x6dag4ndizvppr2g5x1v8sbj08r6n7mi98c89fn4f7nvqqw"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
+  MafDb_gnomAD_r2_0_1_hs37d5 = derive2 { name="MafDb.gnomAD.r2.0.1.hs37d5"; version="3.8.0"; sha256="0kb50g4kmj1b4xm9p8q6j1yzpv5ygxf71vqhkb7c0ajqffqbyznm"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
+  MafDb_gnomAD_r2_1_hs37d5 = derive2 { name="MafDb.gnomAD.r2.1.hs37d5"; version="3.8.0"; sha256="00ld23685xlrkx9rpgrcqaycq3zxbxqg734r99avrw8p3lmj4fvc"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
   MafDb_gnomADex_r2_0_1_GRCh38 = derive2 { name="MafDb.gnomADex.r2.0.1.GRCh38"; version="3.7.0"; sha256="0hwyyqa4g3hp85hk4b6qfzm10yk6h20sh0f2mf09yr0hpmkjyl59"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
-  MafDb_gnomADex_r2_0_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.0.1.hs37d5"; version="3.7.0"; sha256="1y1kzbs37h804c81rll64kz83rpzmzl1z410frabyyblpxm275j5"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
-  MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.10.0"; sha256="0dc2j64v93j7gj28yl9lpbxdqlqszr8sn3p7jbkcwixgpczhqzbj"; depends=[MeSHDbi]; };
-  MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.10.0"; sha256="1p0495kyg2vcbf98scfxb1iidn4xvv1r1jwxx40g1fjwl1s0rm4k"; depends=[MeSHDbi]; };
-  MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.10.0"; sha256="0ipnzigw2791fgzr6s2a8m4idpicwlk46pplq9q3ql9ss0nw4swi"; depends=[MeSHDbi]; };
-  MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.10.0"; sha256="1kpr0li13kwn2ynnghaj775ln7zxim8jdasbrmnyrq8b61v1784s"; depends=[MeSHDbi]; };
-  MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.10.0"; sha256="0aa6qgk9vwdkwykkml10j0vcjp53ypa2p3p8za9qgfk0r19831wi"; depends=[MeSHDbi]; };
-  MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.10.0"; sha256="1v81wccvd2kgx05h2lffbdjkl8xsdb0f5h2i12csfnlhfgvgasdf"; depends=[MeSHDbi]; };
-  MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.10.0"; sha256="0caii8lq500rc5kaqq354zldrb2b0zapypqzr6kfh4swa6fa90x5"; depends=[MeSHDbi]; };
-  MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.10.0"; sha256="1x33f3g8951kawq3j1p1aic9jlx10dbf8qb1g0yrcrq1nvxnywlq"; depends=[MeSHDbi]; };
-  MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.10.0"; sha256="1inpqz39ingljyjsp9v7mfvx8jcmmmkc3p3k4ffcw9xfd17iiw9s"; depends=[MeSHDbi]; };
-  MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.10.0"; sha256="1bwmy42s7rvnng5p1lqcbjhxvw42pr9gbyp7r1951n69f1311n45"; depends=[MeSHDbi]; };
-  MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.10.0"; sha256="1fw30l682sfcpdqqg8r5vyk0slxx00k1agxgli1syhvhh1hrbnxx"; depends=[MeSHDbi]; };
-  MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.10.0"; sha256="0xgzsvqr62g8gipz1i73mxrbg8784axc6hj82v034i03zh0kz2rp"; depends=[MeSHDbi]; };
-  MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.10.0"; sha256="136cg8nmwhc6iplzj2wxmgy4nggi3532xv3kff0hx85g5nbj6k6g"; depends=[MeSHDbi]; };
-  MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.10.0"; sha256="05wj3ib1xjiy2asz41h32r29371qyd8dc3xrx78wwfj2a7760b4y"; depends=[MeSHDbi]; };
-  MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.10.0"; sha256="1b8jc8gc62knhkl0g6isx6d0kb2b33mydb0wpp3v0xlmzpv3f4qn"; depends=[MeSHDbi]; };
-  MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.10.0"; sha256="0qiwjxrjz7np4ml2hxdqfqmjaql5hgnzv2919rcxfikp5cxq7b51"; depends=[MeSHDbi]; };
-  MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.10.0"; sha256="06vk6imry285qcmgcrjqlxj0ihxqasg94ap18xcxiwwps1dbha89"; depends=[MeSHDbi]; };
-  MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.10.0"; sha256="1xv54fhn44l3kjgbmrga3lfqjjf3zgwprm0j518qlvycxvr41znr"; depends=[MeSHDbi]; };
-  MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.10.0"; sha256="0582xmkwmpr3hjsh9qzv6q60bypdmrk34rcp0jzzqjnfrn9mxasb"; depends=[MeSHDbi]; };
-  MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.10.0"; sha256="1cjzilbbw6r5sayy8bifx9rrbj3y95yzm8vdpxg5y1kvsa8047y1"; depends=[MeSHDbi]; };
-  MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.10.0"; sha256="099s4v5rr0jpzh8x60cjb7rxz8c4f8m2s3r09cgzi1fxpmmlzspm"; depends=[MeSHDbi]; };
-  MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.10.0"; sha256="0apr6i080wkhb5s5h6v64b40wdx6fygn422vllwicjkqxllbaa4x"; depends=[MeSHDbi]; };
-  MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.10.0"; sha256="1ln50lqba33vsvbk6wydgm2akpnvv92305zxcpbl6d2px0xbjldz"; depends=[MeSHDbi]; };
-  MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.10.0"; sha256="0nwag2828j1hqx6biihnpprzbrimc7as3nn3p4kkhs067bz457ny"; depends=[MeSHDbi]; };
-  MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.10.0"; sha256="1bcqyrcff510l5my5wha0yrl76wznm7xljlbv24q1i2mjb00x087"; depends=[MeSHDbi]; };
-  MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.10.0"; sha256="1zsq4fkr2bqcfdf1v5w3gn5x29f1q9y4b4qx7nhiipfwiybnjdpd"; depends=[MeSHDbi]; };
-  MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.10.0"; sha256="1xr4h3d3fs20cfwzaj1jjipfnbbvgmx7rlmxfvv8q8hxpfzp7vsp"; depends=[MeSHDbi]; };
-  MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.10.0"; sha256="1hjywgbgbpgsk8hhwlfz9phx3hwi14j9yxa8zmbas3w9cf9hg35a"; depends=[MeSHDbi]; };
-  MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.10.0"; sha256="05mhyfjj2m1mx575nyc53lrwhj0lip4bcv5xa37swz7n1x821bnq"; depends=[MeSHDbi]; };
-  MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.10.0"; sha256="03vrcnfcpj1ayrfawwqgvdvb7mymkwng36pr8p491l8vmk4yhsgs"; depends=[MeSHDbi]; };
-  MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.10.0"; sha256="113zcn037fx15g5xipz9bczw0b913yd8sp4l3yg8zffai8qmhwcj"; depends=[MeSHDbi]; };
-  MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.10.0"; sha256="00i6r7fhqrnbyxmkcpvsyhm1wzmskmrqnfsvd7ls0xcw3h6lpp7v"; depends=[MeSHDbi]; };
-  MeSH_Eco_55989_eg_db = derive2 { name="MeSH.Eco.55989.eg.db"; version="1.10.0"; sha256="1azyzg3ak01mbgdw8l7csgiwpzd5fwk6h3x8n261xxm1yd5f1g9l"; depends=[MeSHDbi]; };
-  MeSH_Eco_ED1a_eg_db = derive2 { name="MeSH.Eco.ED1a.eg.db"; version="1.10.0"; sha256="0j7rga9n6gl6k1gh5ppz742gy4swriwwnfavrjam6k6inl40as57"; depends=[MeSHDbi]; };
-  MeSH_Eco_IAI39_eg_db = derive2 { name="MeSH.Eco.IAI39.eg.db"; version="1.10.0"; sha256="0cibmy5hyg7aw960cb9zbqdaabbh9f5mwlxdv9gynghkxrqppcaq"; depends=[MeSHDbi]; };
-  MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.10.0"; sha256="1yw0kamb6j25cv3fz7649n43slaxah0f6yzwhglsa4fjffam1ycm"; depends=[MeSHDbi]; };
-  MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.10.0"; sha256="129yw8yrm89rv999va8pn7513c0dl1r1xffsdc01i4wadhq3rrx0"; depends=[MeSHDbi]; };
-  MeSH_Eco_UMN026_eg_db = derive2 { name="MeSH.Eco.UMN026.eg.db"; version="1.10.0"; sha256="17faizllk30rcw66arfr2nkcx4a70vkjzsca1zf7wpl9myad1r3q"; depends=[MeSHDbi]; };
-  MeSH_Eqc_eg_db = derive2 { name="MeSH.Eqc.eg.db"; version="1.10.0"; sha256="1hqm92vmrg5s07dkr1xa7a2jwspx90v969piba3cf6gdmjw81p5j"; depends=[MeSHDbi]; };
-  MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.10.0"; sha256="06cvyg8ib4dkcn92br7wkx9bj36dji9lsn53aliyj6h5sq6ssvfn"; depends=[MeSHDbi]; };
-  MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.10.0"; sha256="11q2gv8c5cv7ll22f6w34pqr7r8jzgkx1bhwl4fj49s8n7rfh0cg"; depends=[MeSHDbi]; };
-  MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.10.0"; sha256="1gw20014wcf67n574p6r7cwcchyk3c915bbkqcwkj25bvvk4cmga"; depends=[MeSHDbi]; };
-  MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.10.0"; sha256="1hh81rhr3iq8a98w7lvbz6cwjq0hfcxrazv7sdy0pjggd12l991r"; depends=[MeSHDbi]; };
-  MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.10.0"; sha256="0p6zhf5fjh5bn1ibmmmjmnpfp2vplx84fa1zbs7djg96vpvz8flp"; depends=[MeSHDbi]; };
-  MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.10.0"; sha256="1f497wkvbgw11887gsbcygi38xj2fb4vxg34k3jf668yq1x25jcm"; depends=[MeSHDbi]; };
-  MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.10.0"; sha256="1mfg8vbqgqbb573ddv7pp3k2nl4gq27jc472rp4y3x4g8b2ci5hv"; depends=[MeSHDbi]; };
-  MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.10.0"; sha256="1l27hl4cl1h02k9al51485f61qlwwqmsgyp46dcvvdg1l8hlckmq"; depends=[MeSHDbi]; };
-  MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.10.0"; sha256="0vvkgbvg6kzl4w8jbvlvaawkxc2j3x1pipqf6q4niy0yk951r30r"; depends=[MeSHDbi]; };
-  MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.10.0"; sha256="02mp7q0g7by8ihjpjwc39d6kwnwpxkn6xhx9v6fzdfy4q558qpnk"; depends=[MeSHDbi]; };
-  MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.10.0"; sha256="1248y32km28aaj92caar8c97bmkml7853l8xp643vxawgwlmc7a6"; depends=[MeSHDbi]; };
-  MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.10.0"; sha256="09576k1m19mjsdm17iw78djn9pb21g5i237rqrdk709rifar6nny"; depends=[MeSHDbi]; };
-  MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.10.0"; sha256="0azrd1jmyyk6n9whgc3jdaqmalqal3vw6sx5cr84m9cbv9b9c9s1"; depends=[MeSHDbi]; };
-  MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.10.0"; sha256="0cgq3caxikrv22y19fg4gpphz4cf3xb2w0s0rsnmwb1bkj57y2x2"; depends=[MeSHDbi]; };
-  MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.10.0"; sha256="1w118c82694wplqr5q7wvzgcdhf9cm2cbyhajlvh9iad089m4cam"; depends=[MeSHDbi]; };
-  MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.10.0"; sha256="0ka2fsmznlaxn24sqg5fvfy7y9plwqywr75hxfxls3dcykhvsn4r"; depends=[MeSHDbi]; };
-  MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.10.0"; sha256="0cqwnjz77r5faf0gi39hg802hxwswzab56m8l55w9paxq4p5n1jx"; depends=[MeSHDbi]; };
-  MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.10.0"; sha256="0gjnbah7ik8sarx05y6hzl94s669j4c8gxi5n6fa6pb9b4kilqfw"; depends=[MeSHDbi]; };
-  MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.10.0"; sha256="11gfdh385vcyzwwszj8fjfbw06ksra677fhmj99f4nrbnvbdjlc8"; depends=[MeSHDbi]; };
-  MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.10.0"; sha256="0yb0qg11fwpk47kb06w4ck518jff9x2j4kkfi254lbn7asawlgv3"; depends=[MeSHDbi]; };
-  MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.10.0"; sha256="0fzcg6m73qa1fzzbq0kqir69axxcgilr0r3kgajrh8hfdrqvxhx2"; depends=[MeSHDbi]; };
-  MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.10.0"; sha256="0kmsmdpvjnfa2wqdpka70wl5cbpf7bc0bvnf2lj559sdg18glr0d"; depends=[MeSHDbi]; };
-  MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.10.0"; sha256="106wa8vv3v13yn3c3dfbqsp5gm8g2bh1r5yc6kynp3pyxxwnmmpi"; depends=[MeSHDbi]; };
-  MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.10.0"; sha256="000p0jvdwxjkkzh94llzxbhdp5q76d3n8wbgk7iblxwm7aq48q4l"; depends=[MeSHDbi]; };
-  MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.10.0"; sha256="04mn9gihl6zdv7d05f7q2jvr9xh6f2276p38rxq13xyh1y797lsf"; depends=[MeSHDbi]; };
-  MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.10.0"; sha256="1h8x4jwcn0dra927nb5s0dq2w4rv8vdmf82vd17xpj46f051k10m"; depends=[MeSHDbi]; };
-  MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.10.0"; sha256="09s2q794zylkv7ac73dja8cm3i33dv334dzyppw4d3hjdc7fbb8h"; depends=[MeSHDbi]; };
-  MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.10.0"; sha256="1dbhnyppwq1hhs71a123c0l3zlvmgzys71wlihvfp9cbz65cav6p"; depends=[MeSHDbi]; };
-  MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.10.0"; sha256="0m3pa3nap2z0sdw0fcx74jly8rkpvrqjzjhjqbck86zirzw48r82"; depends=[MeSHDbi]; };
-  MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.10.0"; sha256="000d65ba942dqk73jbp7hf8jkq5jhvy5b3xqqbmqjp0a3m1pm6ln"; depends=[MeSHDbi]; };
-  MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.10.0"; sha256="16294ss0i9vpsxapn0m6awf7bl8nglh6ir2i0z47985vaclzx86x"; depends=[MeSHDbi]; };
-  MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.10.0"; sha256="050lv051549bcx1n7hlbgh76wxwmz9yrdn0582ixmc240jvgg8xs"; depends=[MeSHDbi]; };
-  MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.10.0"; sha256="1nhnqljin6ia8ra6ma3hkabsnm7vqad411a6bb16yfn9c384c0x9"; depends=[MeSHDbi]; };
-  MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.10.0"; sha256="0zg433hj5f0l7lls4172lv3f3vnr90gc5fxiifpviam2ibv1r114"; depends=[MeSHDbi]; };
-  MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.10.0"; sha256="08yzw25ahckffy6sqwp0qbsp79jr00dk2qgs0g7k3yv7j86yfla9"; depends=[MeSHDbi]; };
-  MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.10.0"; sha256="0bkd4skxdv3ffhq21j74ghg1ksgd0666rbj89d3c01dyn0dhb1lv"; depends=[MeSHDbi]; };
-  MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.10.0"; sha256="0zhkq8skl4ahbqims1s72m5mf59lvjvzz1x6fg9kwbskfv4y3i93"; depends=[MeSHDbi]; };
-  MeSH_db = derive2 { name="MeSH.db"; version="1.10.0"; sha256="1vh7r2din6746z2v4z42inhyyhywi9lahwszm6z42rirzxhcg3xz"; depends=[MeSHDbi]; };
+  MafDb_gnomADex_r2_0_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.0.1.hs37d5"; version="3.8.0"; sha256="0xz6ayip0cdbal6gsc8wpjyg3rr1kadaddv8flw5k8ky84mckzbc"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
+  MafDb_gnomADex_r2_1_hs37d5 = derive2 { name="MafDb.gnomADex.r2.1.hs37d5"; version="3.8.0"; sha256="06vicw9z05j1pw30sw0f2nkcixc14yn3anq0g3317i3rb1kvmwid"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
+  MeSH_AOR_db = derive2 { name="MeSH.AOR.db"; version="1.11.0"; sha256="02ysykmbn1b6rv3fbq71g9lnv16gvxyvb9p9smvm0k9brb7s0q24"; depends=[MeSHDbi]; };
+  MeSH_Aca_eg_db = derive2 { name="MeSH.Aca.eg.db"; version="1.11.0"; sha256="13x69ki5g99hravrfdll98z2n7nghvf02v920q4g2bgjzzh68sks"; depends=[MeSHDbi]; };
+  MeSH_Aga_PEST_eg_db = derive2 { name="MeSH.Aga.PEST.eg.db"; version="1.11.0"; sha256="1sffv89v1vrlgy36kf7q7ixnc2iwfaa2h0dsxrg0pjmzsq669h9s"; depends=[MeSHDbi]; };
+  MeSH_Ame_eg_db = derive2 { name="MeSH.Ame.eg.db"; version="1.11.0"; sha256="0ssivaq31rjagw5sdjg9ai3bm73mdvdrkqz0snf3phdgxpvldqms"; depends=[MeSHDbi]; };
+  MeSH_Aml_eg_db = derive2 { name="MeSH.Aml.eg.db"; version="1.11.0"; sha256="0cl95vipqcjf1pb9bjzvxa4dc0d5rzac84n9f6l061vhifa2c3pn"; depends=[MeSHDbi]; };
+  MeSH_Ana_eg_db = derive2 { name="MeSH.Ana.eg.db"; version="1.11.0"; sha256="190h3pch16bzx0h674kwywcy3pr1y16jbzczbmmvsxg1l2j549zm"; depends=[MeSHDbi]; };
+  MeSH_Ani_FGSC_eg_db = derive2 { name="MeSH.Ani.FGSC.eg.db"; version="1.11.0"; sha256="0w6gq9xy1v84ksbd849jpj073s51fbhgss8wl6ax4ybxvfp22m0s"; depends=[MeSHDbi]; };
+  MeSH_Ath_eg_db = derive2 { name="MeSH.Ath.eg.db"; version="1.11.0"; sha256="0jdxvnhxrajhd5dr6hzfii7b1n6x874qfc8999pw8y8rwh8c4ln7"; depends=[MeSHDbi]; };
+  MeSH_Bfl_eg_db = derive2 { name="MeSH.Bfl.eg.db"; version="1.11.0"; sha256="0vqyanf9n9ji77zkck3vyrrhm87hx3yxiy9fpwal6a0vh31vrjb9"; depends=[MeSHDbi]; };
+  MeSH_Bsu_168_eg_db = derive2 { name="MeSH.Bsu.168.eg.db"; version="1.11.0"; sha256="11f9jibxf0amhixhs2pvmx6ir1530qkm9xcjrj09hwyx687bs3z8"; depends=[MeSHDbi]; };
+  MeSH_Bta_eg_db = derive2 { name="MeSH.Bta.eg.db"; version="1.11.0"; sha256="03nbmbnbfvpja1p9rnqy1mpamlab0fd2y4fkx456jmnl87m1zk0n"; depends=[MeSHDbi]; };
+  MeSH_Cal_SC5314_eg_db = derive2 { name="MeSH.Cal.SC5314.eg.db"; version="1.11.0"; sha256="0pd9gigwrckz9drh3x7n9nvvcq2q2wwmczkhhkqlpp4qhg85yp7g"; depends=[MeSHDbi]; };
+  MeSH_Cbr_eg_db = derive2 { name="MeSH.Cbr.eg.db"; version="1.11.0"; sha256="1rjb9ldrn2jg73p2j9mjn61ljw83bhr07yq7482lp4mglhwvqibm"; depends=[MeSHDbi]; };
+  MeSH_Cel_eg_db = derive2 { name="MeSH.Cel.eg.db"; version="1.11.0"; sha256="14ywqllqgynwfxyxrkw2d6r7m2n82znx9s15l62d7jb88pvaajn6"; depends=[MeSHDbi]; };
+  MeSH_Cfa_eg_db = derive2 { name="MeSH.Cfa.eg.db"; version="1.11.0"; sha256="0b5b5dyh99gykdp3whdz7rjz1862p3w4jigy7s1bjmhv4pm3bn2d"; depends=[MeSHDbi]; };
+  MeSH_Cin_eg_db = derive2 { name="MeSH.Cin.eg.db"; version="1.11.0"; sha256="1cbwqyb4ja10j0250lggbpxgpivf0xj1m7hn4l687rdidxgrmy4s"; depends=[MeSHDbi]; };
+  MeSH_Cja_eg_db = derive2 { name="MeSH.Cja.eg.db"; version="1.11.0"; sha256="0b5q8yclcx18f8aq45ikv7qyw0xfsksjf1fbl6fprflvzfz2cnir"; depends=[MeSHDbi]; };
+  MeSH_Cpo_eg_db = derive2 { name="MeSH.Cpo.eg.db"; version="1.11.0"; sha256="1rd90rzipaa480sahh7pqlv1qzj1wcx543gkshj6mcfkr6r08zci"; depends=[MeSHDbi]; };
+  MeSH_Cre_eg_db = derive2 { name="MeSH.Cre.eg.db"; version="1.11.0"; sha256="0xg2mi60qlg76g1zxmybcixci8nivw4ld91qxf13jybcr0mwf9xn"; depends=[MeSHDbi]; };
+  MeSH_Dan_eg_db = derive2 { name="MeSH.Dan.eg.db"; version="1.11.0"; sha256="0l80s6v7p2n7p17chbk6a7y5y2b02z38x034jwg3yvyfqy073r11"; depends=[MeSHDbi]; };
+  MeSH_Dda_3937_eg_db = derive2 { name="MeSH.Dda.3937.eg.db"; version="1.11.0"; sha256="187zq75qz7jysz8jg5k5sgvxkrpvdyyi8xlsidi774nyb7z5d96l"; depends=[MeSHDbi]; };
+  MeSH_Ddi_AX4_eg_db = derive2 { name="MeSH.Ddi.AX4.eg.db"; version="1.11.0"; sha256="1aicyzgw5nx6z9q339cd1iabi7a1yjswla0j94anqwh783lqrpxq"; depends=[MeSHDbi]; };
+  MeSH_Der_eg_db = derive2 { name="MeSH.Der.eg.db"; version="1.11.0"; sha256="03rvcxawyhckg693w2ngnk3sljgz7idha6iqyax8p8wagl2h5ipv"; depends=[MeSHDbi]; };
+  MeSH_Dgr_eg_db = derive2 { name="MeSH.Dgr.eg.db"; version="1.11.0"; sha256="17d3ankadjsvddfqxqm3hnqcmsr2rknkbvraq6zpdl7xw3r21yfn"; depends=[MeSHDbi]; };
+  MeSH_Dme_eg_db = derive2 { name="MeSH.Dme.eg.db"; version="1.11.0"; sha256="1j3wsmspg7w30y04l173pihac9xg633w8zj2scz6jnph6rgxw3p1"; depends=[MeSHDbi]; };
+  MeSH_Dmo_eg_db = derive2 { name="MeSH.Dmo.eg.db"; version="1.11.0"; sha256="0640jfik9qp15h5180rn1afd2kv2wh5s0nbv2zjiz6089csb2fnf"; depends=[MeSHDbi]; };
+  MeSH_Dpe_eg_db = derive2 { name="MeSH.Dpe.eg.db"; version="1.11.0"; sha256="1y058sma4p48fj5f8v2i79nak5892pkk7rmr3i18jv44c8246zzl"; depends=[MeSHDbi]; };
+  MeSH_Dre_eg_db = derive2 { name="MeSH.Dre.eg.db"; version="1.11.0"; sha256="03dybrs5zhnil83jp37hq4rh8ybvyjnqpkr2vwa7f1kd65mq33za"; depends=[MeSHDbi]; };
+  MeSH_Dse_eg_db = derive2 { name="MeSH.Dse.eg.db"; version="1.11.0"; sha256="032kjhsm39jck9gxlg15g4x6n4r2iyi339vm6b9v4xcays45h9hi"; depends=[MeSHDbi]; };
+  MeSH_Dsi_eg_db = derive2 { name="MeSH.Dsi.eg.db"; version="1.11.0"; sha256="0h60gqkc4cjkbqs8i3x6z774qq4ihp20bssi70wli6fvsiysgbly"; depends=[MeSHDbi]; };
+  MeSH_Dvi_eg_db = derive2 { name="MeSH.Dvi.eg.db"; version="1.11.0"; sha256="1c8rg4h6gcs4y5gxz1z66a0ma3xpg4sdp6zwzcyrq02r2vjwj6ls"; depends=[MeSHDbi]; };
+  MeSH_Dya_eg_db = derive2 { name="MeSH.Dya.eg.db"; version="1.11.0"; sha256="03aycm5222wkx6rh7x204rkcxnh6amghm2zpzqiy4c5a2a871y9d"; depends=[MeSHDbi]; };
+  MeSH_Eco_55989_eg_db = derive2 { name="MeSH.Eco.55989.eg.db"; version="1.11.0"; sha256="0qqwwa3hk8ds2nv7xndqx4z9s00524sqrpgxh690yhdczn1ridqd"; depends=[MeSHDbi]; };
+  MeSH_Eco_ED1a_eg_db = derive2 { name="MeSH.Eco.ED1a.eg.db"; version="1.11.0"; sha256="1v47a80lvhhbl7sqx881nx1m4pqi6mprmgd03cvk4vhrgv74ji8f"; depends=[MeSHDbi]; };
+  MeSH_Eco_IAI39_eg_db = derive2 { name="MeSH.Eco.IAI39.eg.db"; version="1.11.0"; sha256="0mpabfvji1y1irgm5wkbinabriwbbb6wg6a0rc4mq5vn6j8nia36"; depends=[MeSHDbi]; };
+  MeSH_Eco_K12_MG1655_eg_db = derive2 { name="MeSH.Eco.K12.MG1655.eg.db"; version="1.11.0"; sha256="1sb0b82ibvk2n22a88c7qkmb3wch6zcgaah54p920dih2xxx24nb"; depends=[MeSHDbi]; };
+  MeSH_Eco_O157_H7_Sakai_eg_db = derive2 { name="MeSH.Eco.O157.H7.Sakai.eg.db"; version="1.11.0"; sha256="1i65691h3w34kvqswfkg6klpj8gm39p6csa8da4hlbwc7q58zzpf"; depends=[MeSHDbi]; };
+  MeSH_Eco_UMN026_eg_db = derive2 { name="MeSH.Eco.UMN026.eg.db"; version="1.11.0"; sha256="12yrsy71g0r6w028i56kxknkb4gr34x4d6064m61023234j31j69"; depends=[MeSHDbi]; };
+  MeSH_Eqc_eg_db = derive2 { name="MeSH.Eqc.eg.db"; version="1.11.0"; sha256="19ihdqwlrifd6nyi1bbxnjbq7qqb535d47mm5h0f1pz2h6w6jps6"; depends=[MeSHDbi]; };
+  MeSH_Gga_eg_db = derive2 { name="MeSH.Gga.eg.db"; version="1.11.0"; sha256="1f2f9vqdaqi6iak6yg3rcgcpvhaz76zl4hywnlz1gi7aszxiff0k"; depends=[MeSHDbi]; };
+  MeSH_Gma_eg_db = derive2 { name="MeSH.Gma.eg.db"; version="1.11.0"; sha256="075hhjahc34bznvmqrlc6vnlq25c4ybsyd6ry5qmnzccpxyqhgv8"; depends=[MeSHDbi]; };
+  MeSH_Hsa_eg_db = derive2 { name="MeSH.Hsa.eg.db"; version="1.11.0"; sha256="0c7kb73jrr74a05jgyf903bvy92pn23aklflnl2cqqwxqjc6f9hm"; depends=[MeSHDbi]; };
+  MeSH_Laf_eg_db = derive2 { name="MeSH.Laf.eg.db"; version="1.11.0"; sha256="1zg7c08z6j02sg74ff1q3hnmy5bszd6g5dyr0hxxqivx28bmirya"; depends=[MeSHDbi]; };
+  MeSH_Lma_eg_db = derive2 { name="MeSH.Lma.eg.db"; version="1.11.0"; sha256="1p70v5bvhawsh954mmnxiy734n0z6b0mfl4j3i2g3jijwrds9f6v"; depends=[MeSHDbi]; };
+  MeSH_Mdo_eg_db = derive2 { name="MeSH.Mdo.eg.db"; version="1.11.0"; sha256="0997k7iwq49sf2fn88lgx5j3rhsv9g7mldsm2bpsqmw52d8j568f"; depends=[MeSHDbi]; };
+  MeSH_Mes_eg_db = derive2 { name="MeSH.Mes.eg.db"; version="1.11.0"; sha256="16pxwy7yycdp59j3nvz58jc8h2y251b4prpk4nn589z7pk37hw52"; depends=[MeSHDbi]; };
+  MeSH_Mga_eg_db = derive2 { name="MeSH.Mga.eg.db"; version="1.11.0"; sha256="0dmdfi983i2sf56b06p7q1w7n8ik3j1dkfw1x1cc207wmmns4916"; depends=[MeSHDbi]; };
+  MeSH_Miy_eg_db = derive2 { name="MeSH.Miy.eg.db"; version="1.11.0"; sha256="024076n31mpz2fr7dbf5di6gxn1w1gajx95065vl4555zx46i9n1"; depends=[MeSHDbi]; };
+  MeSH_Mml_eg_db = derive2 { name="MeSH.Mml.eg.db"; version="1.11.0"; sha256="0rbnysb12i2f1a9xz0869m5n031j60c8bxnj1cp0zxlnylamf7w0"; depends=[MeSHDbi]; };
+  MeSH_Mmu_eg_db = derive2 { name="MeSH.Mmu.eg.db"; version="1.11.0"; sha256="1h9jz00bgz54nknl95jf60qqgmn5iyq766sdkxn7r54h9315c9g9"; depends=[MeSHDbi]; };
+  MeSH_Mtr_eg_db = derive2 { name="MeSH.Mtr.eg.db"; version="1.11.0"; sha256="1b4nhix3ky4d0cm8hix9m7chcgdyskvd0h7fj3k13a4zxyxvfw9x"; depends=[MeSHDbi]; };
+  MeSH_Nle_eg_db = derive2 { name="MeSH.Nle.eg.db"; version="1.11.0"; sha256="16fcswjrv056g5d6ikf2g8af470djf02pyxhp5ib6gk932vl7kp0"; depends=[MeSHDbi]; };
+  MeSH_Oan_eg_db = derive2 { name="MeSH.Oan.eg.db"; version="1.11.0"; sha256="08cdkyvwss0cczd6j19j02950jpqhhzi79y9swqnzzh3nydb3aqj"; depends=[MeSHDbi]; };
+  MeSH_Ocu_eg_db = derive2 { name="MeSH.Ocu.eg.db"; version="1.11.0"; sha256="09nigd6hc3iy3s2r70ixfyj04la8cnaxhvr5i1k0adapjgf4q1mx"; depends=[MeSHDbi]; };
+  MeSH_Oni_eg_db = derive2 { name="MeSH.Oni.eg.db"; version="1.11.0"; sha256="1cwhbrpiznkfbkxchpddkr68jzcxzn0mvn8cy81dm0vj4x8dxjb8"; depends=[MeSHDbi]; };
+  MeSH_Osa_eg_db = derive2 { name="MeSH.Osa.eg.db"; version="1.11.0"; sha256="0psaqhdi4hicy5vkngkh7ig5ndsjl768n9fg36zlvqllww58kfis"; depends=[MeSHDbi]; };
+  MeSH_PCR_db = derive2 { name="MeSH.PCR.db"; version="1.11.0"; sha256="0jdwxkwinbnvap0mpirzcd4zgfvhsmca2r57s2lzh2i1x24hxa4c"; depends=[MeSHDbi]; };
+  MeSH_Pab_eg_db = derive2 { name="MeSH.Pab.eg.db"; version="1.11.0"; sha256="16qcm0d8m53dkwfbcsygbm3xj7x6hblwpa4agds5vnlkb26m48qn"; depends=[MeSHDbi]; };
+  MeSH_Pae_PAO1_eg_db = derive2 { name="MeSH.Pae.PAO1.eg.db"; version="1.11.0"; sha256="1w3zqynqjv79ixxnmn3khvj3p6586nq48dx00rap6vzirmhzigqv"; depends=[MeSHDbi]; };
+  MeSH_Pfa_3D7_eg_db = derive2 { name="MeSH.Pfa.3D7.eg.db"; version="1.11.0"; sha256="0ryxhk5g07fpnnk72q5a2847k6w509956fcxnrvwvp7f98p3z50x"; depends=[MeSHDbi]; };
+  MeSH_Pto_eg_db = derive2 { name="MeSH.Pto.eg.db"; version="1.11.0"; sha256="0i1772rpq95ppzxa809ms1r65d9rk5vqhcl36ndjs2lhzdydw8fz"; depends=[MeSHDbi]; };
+  MeSH_Ptr_eg_db = derive2 { name="MeSH.Ptr.eg.db"; version="1.11.0"; sha256="0xgi89vzhxkmqx0y84i58jkxikksqdi64r82p59ir6l1anpyvvc9"; depends=[MeSHDbi]; };
+  MeSH_Rno_eg_db = derive2 { name="MeSH.Rno.eg.db"; version="1.11.0"; sha256="0g0fnackq1yjaw0b3ppzbcj0sfx288wm6cv57ly69svfg1n0wlk5"; depends=[MeSHDbi]; };
+  MeSH_Sce_S288c_eg_db = derive2 { name="MeSH.Sce.S288c.eg.db"; version="1.11.0"; sha256="1z29d19is5lq8rqrkk1dyifgn0v2i68pbw8i7dlwnnicj2sfpynb"; depends=[MeSHDbi]; };
+  MeSH_Sco_A32_eg_db = derive2 { name="MeSH.Sco.A32.eg.db"; version="1.11.0"; sha256="0dcxjlpc9diz1lvrkpbrab5zjz96r837x7ij9786966a3x458xk0"; depends=[MeSHDbi]; };
+  MeSH_Sil_eg_db = derive2 { name="MeSH.Sil.eg.db"; version="1.11.0"; sha256="0gpj4i2mls1qkyivxy2gk3b8w9vkxnwf2b0cpmbv5bvpjcsbw47i"; depends=[MeSHDbi]; };
+  MeSH_Spu_eg_db = derive2 { name="MeSH.Spu.eg.db"; version="1.11.0"; sha256="14knm1h8mp5qfjbny2wwkj772x72laxgymhsa04m78mb38qhypwq"; depends=[MeSHDbi]; };
+  MeSH_Ssc_eg_db = derive2 { name="MeSH.Ssc.eg.db"; version="1.11.0"; sha256="0hwgkq669g99yrkbpk3pjpxbz7q0vwvkcx3rrvdk9dnjinlbcn54"; depends=[MeSHDbi]; };
+  MeSH_Syn_eg_db = derive2 { name="MeSH.Syn.eg.db"; version="1.11.0"; sha256="1mz986apgfd6sn62wws948yi46r87fzaszxnv450fgc42l23l0jx"; depends=[MeSHDbi]; };
+  MeSH_Tbr_9274_eg_db = derive2 { name="MeSH.Tbr.9274.eg.db"; version="1.11.0"; sha256="0dvz5xbx6vdmqibpq8xmpdjfvvqw7iqq3w4d350sxj5kaw2afp5s"; depends=[MeSHDbi]; };
+  MeSH_Tgo_ME49_eg_db = derive2 { name="MeSH.Tgo.ME49.eg.db"; version="1.11.0"; sha256="08hyvaqsvdpcizsqr53ab6bfh1fnlsj8d62pq03lpgr96rlyqi8q"; depends=[MeSHDbi]; };
+  MeSH_Tgu_eg_db = derive2 { name="MeSH.Tgu.eg.db"; version="1.11.0"; sha256="0mid3qmv7kxc7kn69vbhgchvrbv4fig97nw9zxsbd0rj66abzas2"; depends=[MeSHDbi]; };
+  MeSH_Vvi_eg_db = derive2 { name="MeSH.Vvi.eg.db"; version="1.11.0"; sha256="1pwq58mm7ripnzxcn13k1y157pjasrv30xxmrrqb4rv55nk61vbf"; depends=[MeSHDbi]; };
+  MeSH_Xla_eg_db = derive2 { name="MeSH.Xla.eg.db"; version="1.11.0"; sha256="0qd75lkyrs864sy3sci3bablipn9gabk24wbriis9bi0qf7hccv5"; depends=[MeSHDbi]; };
+  MeSH_Xtr_eg_db = derive2 { name="MeSH.Xtr.eg.db"; version="1.11.0"; sha256="0djsx876h0xz0h8jhs6yad8iqqjlr72b0fxasqgh89zpfp2hkvwd"; depends=[MeSHDbi]; };
+  MeSH_Zma_eg_db = derive2 { name="MeSH.Zma.eg.db"; version="1.11.0"; sha256="08b92lhq2gbvbm7y0q4zc991wi1fjhm68n03b782h2g6syczmlma"; depends=[MeSHDbi]; };
+  MeSH_db = derive2 { name="MeSH.db"; version="1.11.0"; sha256="1l6hynwmhb8p666q8n9dnvd0nhjy1f9nz2jg3z2p13dc5jl6syiw"; depends=[MeSHDbi]; };
   MmAgilentDesign026655_db = derive2 { name="MmAgilentDesign026655.db"; version="3.2.3"; sha256="00d0yjcb5id7zacx4bzdwy4q6f4qvnnx8ph4d4xz1fmcbspz2qiz"; depends=[AnnotationDbi org_Mm_eg_db]; };
   MoExExonProbesetLocation = derive2 { name="MoExExonProbesetLocation"; version="1.15.0"; sha256="0bvj3bji4bwwmxjz4b57n1aqypdibdmry30rfwmlxss1hav96sl7"; depends=[AnnotationDbi]; };
   Mu15v1_db = derive2 { name="Mu15v1.db"; version="3.2.3"; sha256="0qchqkbx6ybijab8qhflxj33kwksfll1d3d3917vydjac9fzw1lz"; depends=[AnnotationDbi org_Mm_eg_db]; };
@@ -236,7 +257,7 @@ in with self; {
   Norway981_db = derive2 { name="Norway981.db"; version="3.2.3"; sha256="04ngc2hilqi9m7933mnm7jcvkxlz68vqqh5b628db575vcxql9b9"; depends=[AnnotationDbi org_Hs_eg_db]; };
   OperonHumanV3_db = derive2 { name="OperonHumanV3.db"; version="3.2.3"; sha256="082gff88cwk2p50q8g9bixggacaclgqcvk6w5dc11h9fkgvd160i"; depends=[AnnotationDbi org_Hs_eg_db]; };
   PANTHER_db = derive2 { name="PANTHER.db"; version="1.0.4"; sha256="1vl8anixkhcb9axlszk479yaw48bz1hhgmff41nqk8k8w4jkyn1y"; depends=[AnnotationDbi RSQLite]; };
-  PFAM_db = derive2 { name="PFAM.db"; version="3.6.0"; sha256="1zlrwps1kwl2h0cmvh0qqmn93n2md6yrkm47nz2vy080dry0q0ix"; depends=[AnnotationDbi]; };
+  PFAM_db = derive2 { name="PFAM.db"; version="3.7.0"; sha256="0ih3xz8vk80xzqwgv6ff3rp1a24qhwd1v1frkq1m6d981g7ymdap"; depends=[AnnotationDbi]; };
   POCRCannotation_db = derive2 { name="POCRCannotation.db"; version="3.2.3"; sha256="0ybvs4hrxpivdkhm0fxpib11vlxqqdk8prlyj78vj5qzyb3iy89d"; depends=[AnnotationDbi org_Hs_eg_db]; };
   PartheenMetaData_db = derive2 { name="PartheenMetaData.db"; version="3.2.3"; sha256="0d37c5b7s3fgkkvg7sj7gl9ksrjk5pyyv54vkys8w3qwgsm8yrdz"; depends=[AnnotationDbi org_Hs_eg_db]; };
   PolyPhen_Hsapiens_dbSNP131 = derive2 { name="PolyPhen.Hsapiens.dbSNP131"; version="1.0.2"; sha256="1kikygkli41sn3rqihz0924prmqg2264ifj29vmg1a7qccm0kf7c"; depends=[AnnotationDbi RSQLite VariantAnnotation]; };
@@ -257,38 +278,39 @@ in with self; {
   SNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.20"; sha256="0yxmsnxncr7w30r0d7bg5i96pclm2vf40p9jdqa02rc67a6sximn"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
   SNPlocs_Hsapiens_dbSNP149_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP149.GRCh38"; version="0.99.20"; sha256="17bv25p1261hn9d7mxfp6pvivj15pxyvr92gms8a8msfqg9y0xkb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
   SNPlocs_Hsapiens_dbSNP150_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP150.GRCh38"; version="0.99.20"; sha256="0jkwwgxxpm9ry8kizq8hs70sky41pks1ag40y5aqq91yjbpqlckj"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
+  SNPlocs_Hsapiens_dbSNP151_GRCh38 = derive2 { name="SNPlocs.Hsapiens.dbSNP151.GRCh38"; version="0.99.20"; sha256="19mmzlg76hh0imrqf135kcbwxkmm403gj9y7wk6ij9k12afr9kfz"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
   TxDb_Athaliana_BioMart_plantsmart22 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart22"; version="3.0.1"; sha256="0j2zr4cddad7z1lxx9m9kfgyy7jajjnblpk9j8igd39ia3ixrpzc"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Athaliana_BioMart_plantsmart25 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart25"; version="3.1.3"; sha256="0a6v0l6p13zmiysi3k8dxzdlxng552qqj9rnlbdavdiidla0pvm3"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Athaliana_BioMart_plantsmart28 = derive2 { name="TxDb.Athaliana.BioMart.plantsmart28"; version="3.2.2"; sha256="1yjyvrbx55y024lqg3b2rlf8pngqw5xi3p83j5ipan05wf0aq6ir"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.4.3"; sha256="1i4r6gmw2kv67hiwc5k2f0jzh87nx2l8q8ksxqy9hdn1q5wpsrxl"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.4.3"; sha256="1q68ds8j7m4a1sagn1ypc6p7qqdkdvmhjg7z57ksdl3w4rhkk1w9"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Btaurus_UCSC_bosTau8_refGene = derive2 { name="TxDb.Btaurus.UCSC.bosTau8.refGene"; version="3.4.4"; sha256="18gmx57savyvvdkgnrvmc4xj3xrakybyx4pkfmpabnqy29z6n71q"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Celegans_UCSC_ce11_refGene = derive2 { name="TxDb.Celegans.UCSC.ce11.refGene"; version="3.4.4"; sha256="04jcx40z2380x760wbl686zvm780y38kls1js215jhmw7hff8md5"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Celegans_UCSC_ce6_ensGene = derive2 { name="TxDb.Celegans.UCSC.ce6.ensGene"; version="3.2.2"; sha256="1sgppva33cdy4isj2is8mfalj5gmmkpbkq9w1d83a4agcq31mi90"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.4.3"; sha256="1yh4cp509rfw5xj0la49gyxy26l8fasap7dhianhhfnsdqkayzrs"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Cfamiliaris_UCSC_canFam3_refGene = derive2 { name="TxDb.Cfamiliaris.UCSC.canFam3.refGene"; version="3.4.4"; sha256="1rl7yc2csc3fs2iri0kkvpjv34jnhkzc0jhh2a3hnyvhv55lzmf0"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Dmelanogaster_UCSC_dm3_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm3.ensGene"; version="3.2.2"; sha256="1337x23rdmiiza83ms225kri37h16q5hw1lw0m577abcgip3d7c7"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Dmelanogaster_UCSC_dm6_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm6.ensGene"; version="3.4.1"; sha256="0sdw0gbk84lfjmiyy2x4q01zh1vbjq3vfziwxkb4h0v6nab63k01"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.4.3"; sha256="03awii2bq91glqwklr0m48p6qlxq4rij39ncq2f6sbzw5iqqjjbr"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Ggallus_UCSC_galGal4_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal4.refGene"; version="3.4.3"; sha256="1a17401a8lfkv7acxxsh02yrmrmw7mj3207jgrcxjmbd6sicymy8"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Ggallus_UCSC_galGal5_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal5.refGene"; version="3.4.3"; sha256="124hdrj3n77pw7jkxfga8b4flp5xlzynn50fpfjh163jkdb6r9ij"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Dmelanogaster_UCSC_dm6_ensGene = derive2 { name="TxDb.Dmelanogaster.UCSC.dm6.ensGene"; version="3.4.4"; sha256="18nwjnkbrvrkk6g5jns3h55874hk92fdbrfyjvvxk4daw0p7gii8"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Drerio_UCSC_danRer10_refGene = derive2 { name="TxDb.Drerio.UCSC.danRer10.refGene"; version="3.4.4"; sha256="1ck4ymlxj0fjrbgxzgdqgbyl3z4nqyc6bczw1cgwblmcv52h3cj0"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Ggallus_UCSC_galGal4_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal4.refGene"; version="3.4.4"; sha256="1cxdrdg3pqwi0rfk5bzik05r1hvxwsva862b7cf7pfcf202dkqg5"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Ggallus_UCSC_galGal5_refGene = derive2 { name="TxDb.Ggallus.UCSC.galGal5.refGene"; version="3.4.4"; sha256="15laq4kdm85755lk176lqsi2aryi9i85b4c1arrj4qgjkjrbylvq"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Hsapiens_BioMart_igis = derive2 { name="TxDb.Hsapiens.BioMart.igis"; version="2.3.2"; sha256="0590a2hkrpm33hmjg5g0gm6sig3xvc09m0q6lwmafgaajf90h6ky"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Hsapiens_UCSC_hg18_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg18.knownGene"; version="3.2.2"; sha256="1yk9ggclkqqfzrdp8gcqyplvif824pa7df54ck5gb1xb9q5s975w"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Hsapiens_UCSC_hg19_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg19.knownGene"; version="3.2.2"; sha256="1sajhcqqwazgz2lqbik7rd935i7kpnh08zxbp2ra10j72yqy4g86"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Hsapiens_UCSC_hg19_lincRNAsTranscripts = derive2 { name="TxDb.Hsapiens.UCSC.hg19.lincRNAsTranscripts"; version="3.2.2"; sha256="0bmbp7kydvviczw8axgxq2wdlwq6fdas90jk9bg56avjq5syws2g"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Hsapiens_UCSC_hg38_knownGene = derive2 { name="TxDb.Hsapiens.UCSC.hg38.knownGene"; version="3.4.0"; sha256="0i0xw0mcn403r911ijqdnrwg9k5bspdnjibfjvnhxq4h8vcfprn5"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.4.3"; sha256="0g14rkxk44bzrhgl5xyfdb8lpq7m5iv95yk92inljz02qxinp9j4"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.4.3"; sha256="16cmwrij91hj10q3alcxpv0qrfah25z5x23m7lmzrgchsjd84rmw"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Mmulatta_UCSC_rheMac3_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac3.refGene"; version="3.4.4"; sha256="13nv7l71piwf0frnwplwbac82ad7vxbw31yrfnqvnd1knh7ns99x"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Mmulatta_UCSC_rheMac8_refGene = derive2 { name="TxDb.Mmulatta.UCSC.rheMac8.refGene"; version="3.4.4"; sha256="1qgm66hnhqb3jyal8s43yri96k1xwb3vamb83894n86bh2g6nlca"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Mmusculus_UCSC_mm10_ensGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.ensGene"; version="3.4.0"; sha256="0saxi1fdiwd38sfvy1rynd3v44rbp158jv6sjqcivvaqnd84zg9s"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Mmusculus_UCSC_mm10_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.knownGene"; version="3.4.0"; sha256="08gava9wsvpcqz51k2sni3pj03n5155v32d9riqbf305nbirqbkb"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Mmusculus_UCSC_mm10_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm10.knownGene"; version="3.4.4"; sha256="01lgxc1fx5nhlpbwjd5zqghkkbmh6axd98ikx4b0spv0jdg6gf39"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Mmusculus_UCSC_mm9_knownGene = derive2 { name="TxDb.Mmusculus.UCSC.mm9.knownGene"; version="3.2.2"; sha256="16bjxy00363hf91ik2mqlqls86i07gia72qh92xc3l1ncch61mx2"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.4.3"; sha256="0yi7lxvf6aq634nhdpyg0hxj8hab93fs9z8iw6janasb2b5any14"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Ptroglodytes_UCSC_panTro5_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro5.refGene"; version="3.4.3"; sha256="1ra1kjmqza1y6i018j8q46s4qa5hxnk1w2a0szip9sckxbj8xlab"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Ptroglodytes_UCSC_panTro4_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro4.refGene"; version="3.4.4"; sha256="12fdcs4vv4l0d3sksdq76nwwj88f8psiy84rd1jhfw8kbxqrhh8y"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Ptroglodytes_UCSC_panTro5_refGene = derive2 { name="TxDb.Ptroglodytes.UCSC.panTro5.refGene"; version="3.4.4"; sha256="00mirzp38iqm0l0py1a7mlslnbmkfzzk1krcg6jdyr8gan2sskpi"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Rnorvegicus_BioMart_igis = derive2 { name="TxDb.Rnorvegicus.BioMart.igis"; version="2.3.2"; sha256="1099vkk8g3lxbgjxsm1p1m3mjj08nsw282mqxgzpnrxf7m6jll76"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Rnorvegicus_UCSC_rn4_ensGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn4.ensGene"; version="3.2.2"; sha256="0gv8bynfxxa471ap069mjvfrb1d7a0c4w5k8hxkr4hnsm44mschm"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.4.3"; sha256="0jpkg9s3ghb61xn3i8x50h7wa0x2ixhzj09n6qk1y661ary5kac2"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.4.3"; sha256="15h2fgxjn92xfyj5yvm460ap7j6ayhkm6i5fgvqyhvgyarmss9a3"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Rnorvegicus_UCSC_rn5_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn5.refGene"; version="3.4.4"; sha256="1h9vmsp8lcr8yyvd1mjm81p8l660bjsx2kyhg3wm96izxgd4i7gn"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Rnorvegicus_UCSC_rn6_refGene = derive2 { name="TxDb.Rnorvegicus.UCSC.rn6.refGene"; version="3.4.4"; sha256="1k4g78kh52ppr4fd5z4bwzzgw8jg6j3zi129fnny4ks6zkadhlw6"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Scerevisiae_UCSC_sacCer2_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer2.sgdGene"; version="3.2.2"; sha256="0l5gcwhbvzx60p9hjhd31angamb0hkgdg2avga7341j77rd5pwza"; depends=[AnnotationDbi GenomicFeatures]; };
   TxDb_Scerevisiae_UCSC_sacCer3_sgdGene = derive2 { name="TxDb.Scerevisiae.UCSC.sacCer3.sgdGene"; version="3.2.2"; sha256="1sjwl7fb3l3zxxbk8gkvzxwdsind0xjj7kmh7dachm6fi17hpb3d"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Sscrofa_UCSC_susScr11_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr11.refGene"; version="3.4.3"; sha256="1lwr8yza22q2wqxdbcg37rn3aml5m96hp2m6rkxvs3g08q7wngis"; depends=[AnnotationDbi GenomicFeatures]; };
-  TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.4.3"; sha256="0agd0vn7fb658srqkr3gzk2y8x86xrcsn4hxbyfp2jhiypx60zzx"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Sscrofa_UCSC_susScr11_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr11.refGene"; version="3.4.4"; sha256="1c6kbkp6iq6zzpg6wpnbgclp1vsdhh19g220va8b61jhgcccr2c6"; depends=[AnnotationDbi GenomicFeatures]; };
+  TxDb_Sscrofa_UCSC_susScr3_refGene = derive2 { name="TxDb.Sscrofa.UCSC.susScr3.refGene"; version="3.4.4"; sha256="1yvjwsq9cn9kyjir53n20fbi8nyf1m64zim18w5mv05w9rn86gdl"; depends=[AnnotationDbi GenomicFeatures]; };
   XtraSNPlocs_Hsapiens_dbSNP141_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP141.GRCh38"; version="0.99.12"; sha256="0a27y0ngg760y5wwcja4dpd7cjd8h5zg1s2b3a1r54s21k65zny3"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
   XtraSNPlocs_Hsapiens_dbSNP144_GRCh37 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh37"; version="0.99.12"; sha256="0k823fvqjmdkmd47m7wyra6jxmv8lnk2i1xl4pp0mh3zgb87hgfb"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
   XtraSNPlocs_Hsapiens_dbSNP144_GRCh38 = derive2 { name="XtraSNPlocs.Hsapiens.dbSNP144.GRCh38"; version="0.99.12"; sha256="0d4q32ij2x4726wvw06sgmivid0n94vfdmszdyh607xlcahqxa5z"; depends=[BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
@@ -298,22 +320,22 @@ in with self; {
   agprobe = derive2 { name="agprobe"; version="2.18.0"; sha256="1vnawamcpz16na8nmlq2czfxcr325fwdnngxl65mmnbd0f4lmy3k"; depends=[AnnotationDbi]; };
   alternativeSplicingEvents_hg19 = derive2 { name="alternativeSplicingEvents.hg19"; version="1.0.1"; sha256="1v714abdpzhwa450zr66s1yjpxl6lkwi3wjbwn8phn87cgf8rj7q"; depends=[AnnotationHub]; };
   alternativeSplicingEvents_hg38 = derive2 { name="alternativeSplicingEvents.hg38"; version="1.0.1"; sha256="0im87mrh1n6kv84q6lm4y15lb93rih88zdpa0jms5az91lyvsf25"; depends=[AnnotationHub]; };
-  anopheles_db0 = derive2 { name="anopheles.db0"; version="3.6.0"; sha256="04dgk9q3hsrh4fncf9w4hx8l7qjwcbhbh1cnnfny5y7cpfliib6m"; depends=[AnnotationDbi]; };
-  arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.6.0"; sha256="10xvx3vfj10xcx4w6jvm2c09p6diqjwaspgvwl5lvcm1xxaghsmf"; depends=[AnnotationDbi]; };
+  anopheles_db0 = derive2 { name="anopheles.db0"; version="3.7.1"; sha256="0f940ybh7kr30d9pkqhr0w2yrwsqa25yxbhzhlccn4a6a6svzcwb"; depends=[AnnotationDbi]; };
+  arabidopsis_db0 = derive2 { name="arabidopsis.db0"; version="3.7.1"; sha256="1d7cnhbm44dv0g6mjv76sdr8dgni34fbffzkk95rqikdqag8s9cy"; depends=[AnnotationDbi]; };
   ath1121501_db = derive2 { name="ath1121501.db"; version="3.2.3"; sha256="1zrf26cfhlmrb5pyfawwk4v8l1mflx8c43zsxrwkbmxzc1jnc7dv"; depends=[AnnotationDbi org_At_tair_db]; };
   ath1121501cdf = derive2 { name="ath1121501cdf"; version="2.18.0"; sha256="1naq8f8dwgbmndx178nm2pw6hjx5ljx0w1wb4dfjifnl4bs5rqcc"; depends=[AnnotationDbi]; };
   ath1121501probe = derive2 { name="ath1121501probe"; version="2.18.0"; sha256="0a2nd8zhp3ybis780l3rrmwcxskbl3a111g8w6m8qfwsw5vnlqg1"; depends=[AnnotationDbi]; };
   barley1cdf = derive2 { name="barley1cdf"; version="2.18.0"; sha256="0rbij5cqr2sz33y5waybv85nrcgf70iwj5gk13g0xn9p1l1zxyn2"; depends=[AnnotationDbi]; };
   barley1probe = derive2 { name="barley1probe"; version="2.18.0"; sha256="1kh5r748b4vkmvlfaclmrh07ypbrzgxn90liqfz1rwkabh6rfk71"; depends=[AnnotationDbi]; };
   bovine_db = derive2 { name="bovine.db"; version="3.2.3"; sha256="1i8mgk60hlmvngb4c727wajix9mca9gfg0pzxrnfcjwi87rpw7fy"; depends=[AnnotationDbi org_Bt_eg_db]; };
-  bovine_db0 = derive2 { name="bovine.db0"; version="3.6.0"; sha256="0183qqj03r2wd6s527403zyd9r0jd0yapffp9881xsd3pcn2n310"; depends=[AnnotationDbi]; };
+  bovine_db0 = derive2 { name="bovine.db0"; version="3.7.1"; sha256="17q8hkfips8znwnkk062m8xsvcpaf6ynpf2jjszrcm02495vbw45"; depends=[AnnotationDbi]; };
   bovinecdf = derive2 { name="bovinecdf"; version="2.18.0"; sha256="13mf0yy0dypkm5n2ghl04xm6ayb9bn9qijqhgynksghi7s2k34mb"; depends=[AnnotationDbi]; };
   bovineprobe = derive2 { name="bovineprobe"; version="2.18.0"; sha256="0i4afa5dksnir2nfrfh2cynjm59sm6vfaqa9wyag8cxg7c2nlm1i"; depends=[AnnotationDbi]; };
   bsubtiliscdf = derive2 { name="bsubtiliscdf"; version="2.18.0"; sha256="1rihrjim37b49rhqr4nxga8sp67qri9xqlqc141mhbngh6cw3iyl"; depends=[AnnotationDbi]; };
   bsubtilisprobe = derive2 { name="bsubtilisprobe"; version="2.18.0"; sha256="0k99hvgaswn96x4yanvr9cy8bdy69sd5q7yp6dj9synxj7s1fcw9"; depends=[AnnotationDbi]; };
   cMAP = derive2 { name="cMAP"; version="1.15.1"; sha256="0pzizm27rgcaic7wsh52z30v1jwarmz4cwh1mksbygp63k54mwiv"; depends=[]; };
   canine_db = derive2 { name="canine.db"; version="3.2.3"; sha256="0wbyzhk827l49yxzimvznx9z6yag5nd4djm2hddysf5nk1ndapqs"; depends=[AnnotationDbi org_Cf_eg_db]; };
-  canine_db0 = derive2 { name="canine.db0"; version="3.6.0"; sha256="1cn3s23h8g3a0h0i97v33qh6yz94bw9i8kzd6xwvgwkj0yinw1ib"; depends=[AnnotationDbi]; };
+  canine_db0 = derive2 { name="canine.db0"; version="3.7.1"; sha256="1z691m0ap7x5sb7pbxlk8cs5s6hwvgvdbjjdxlfp8vilciwrsgwn"; depends=[AnnotationDbi]; };
   canine2_db = derive2 { name="canine2.db"; version="3.2.3"; sha256="1gzd2x23dkfiwnwqz9pdn5lp4l8aby525mhscn3xakw633si4dvz"; depends=[AnnotationDbi org_Cf_eg_db]; };
   canine2cdf = derive2 { name="canine2cdf"; version="2.18.0"; sha256="077cmmnhjdk0vxjzm1kqf3q5kgx6chwkm59dr4s5dy019rqb6sqr"; depends=[AnnotationDbi]; };
   canine2probe = derive2 { name="canine2probe"; version="2.18.0"; sha256="1l849a1dqy4kpcsxs0lvb48ag81i0f0ys0w4757rw4kp8ry59z4b"; depends=[AnnotationDbi]; };
@@ -323,10 +345,10 @@ in with self; {
   celeganscdf = derive2 { name="celeganscdf"; version="2.18.0"; sha256="0a6w0a48azg0i21j3aqb7fnxck3ff9w3gsi89bnlfh0zx6pknx7p"; depends=[AnnotationDbi]; };
   celegansprobe = derive2 { name="celegansprobe"; version="2.18.0"; sha256="05k7si3f8pzkyb8jv0r2vkavbrqxsn4nawl92gcphfsylrwcddqb"; depends=[AnnotationDbi]; };
   chicken_db = derive2 { name="chicken.db"; version="3.2.3"; sha256="1rq9afkpcpv8qi75shvnsw8di3ycai4ylv7jq9zwj51zlwlw9cpq"; depends=[AnnotationDbi org_Gg_eg_db]; };
-  chicken_db0 = derive2 { name="chicken.db0"; version="3.6.0"; sha256="1rkqdlnimxnvb8lwlw11w6iwsn42g11nbihj0v78rx9m0n7s6ik1"; depends=[AnnotationDbi]; };
+  chicken_db0 = derive2 { name="chicken.db0"; version="3.7.1"; sha256="0jib8pamnqzppk2x1i8c7szrwvhhilsxbk2x83ajzbzk3df3rvnd"; depends=[AnnotationDbi]; };
   chickencdf = derive2 { name="chickencdf"; version="2.18.0"; sha256="09hhim5s9xj7n2b5rhn1svf5qly2mn0rr2v2ls25hfzyrqcbxlz1"; depends=[AnnotationDbi]; };
   chickenprobe = derive2 { name="chickenprobe"; version="2.18.0"; sha256="1fdsiwfyg7fwslrr7xs3gny7sw24bzg5k1fvlyzb1477sgj0pid3"; depends=[AnnotationDbi]; };
-  chimp_db0 = derive2 { name="chimp.db0"; version="3.6.0"; sha256="121hzz3s816xhbv6rh87i9qas02j2k89cb6my22n9jhyf74r7nfi"; depends=[AnnotationDbi]; };
+  chimp_db0 = derive2 { name="chimp.db0"; version="3.7.1"; sha256="0bgn2yjj1jg0dswn5m4n78lydlzz7qb8fxpm8pl7909xrkcd1lpw"; depends=[AnnotationDbi]; };
   citruscdf = derive2 { name="citruscdf"; version="2.18.0"; sha256="1326mj1xf3k4v5iyyn46whx24qfng0x3cv6rvckdr1ycc1v887dn"; depends=[AnnotationDbi]; };
   citrusprobe = derive2 { name="citrusprobe"; version="2.18.0"; sha256="0bf1wic136cxwgs4j13wsyqasnyvr0jw1hzg6qizndmy7g8hrb87"; depends=[AnnotationDbi]; };
   clariomdhumanprobeset_db = derive2 { name="clariomdhumanprobeset.db"; version="8.7.0"; sha256="039bsywnim0nr8b3w6vkj4m20j0pggnm6ajjz24bnlikm9zzrs6l"; depends=[AnnotationDbi org_Hs_eg_db]; };
@@ -349,14 +371,14 @@ in with self; {
   ecoli2_db = derive2 { name="ecoli2.db"; version="3.2.3"; sha256="07vc5fl2zq2f65ndcldyzvwfpl65snp6ygvw658j4036lbb7cpjl"; depends=[AnnotationDbi org_EcK12_eg_db]; };
   ecoli2cdf = derive2 { name="ecoli2cdf"; version="2.18.0"; sha256="1rkxrwadq9kg9685z9pg6rgc4bblkx5p3c6snsl4gv2k188dva9r"; depends=[AnnotationDbi]; };
   ecoli2probe = derive2 { name="ecoli2probe"; version="2.18.0"; sha256="11q4ka0ncjapahic49xdl9919vm9frrwlqgj101krgkg262lfm8n"; depends=[AnnotationDbi]; };
-  ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.6.0"; sha256="0l64cb1zqhz9wbm4chbapv9mzm9k0h9v7xzga3syydalzaqlln5l"; depends=[AnnotationDbi]; };
-  ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.6.0"; sha256="129w24f8k7kg7h99jh6jgrvriy1avblz20dk13linhf9bk466vaw"; depends=[AnnotationDbi]; };
+  ecoliK12_db0 = derive2 { name="ecoliK12.db0"; version="3.7.1"; sha256="075ngixclxh1qqgn5p1afxyx8610rfxj1ax3iqmbvqqlyq9nc9ar"; depends=[AnnotationDbi]; };
+  ecoliSakai_db0 = derive2 { name="ecoliSakai.db0"; version="3.7.1"; sha256="1p3lvf92l44kqn47jhgwd6nqnjl0ksnvmsj1052lrbalh5xl3rcd"; depends=[AnnotationDbi]; };
   ecoliasv2cdf = derive2 { name="ecoliasv2cdf"; version="2.18.0"; sha256="16i6has9qgmzakcy24racc1h9j331wndv5c87qp5r1zrai61zyav"; depends=[AnnotationDbi]; };
   ecoliasv2probe = derive2 { name="ecoliasv2probe"; version="2.18.0"; sha256="1hfrnal170cdigc2fmnynb75jjsiq77p4x6ws9gah558hvx87nk3"; depends=[AnnotationDbi]; };
   ecolicdf = derive2 { name="ecolicdf"; version="2.18.0"; sha256="18g5prjykn356k35m131ifn128k5mhij2x26balqav0azigzjqsn"; depends=[AnnotationDbi]; };
   ecoliprobe = derive2 { name="ecoliprobe"; version="2.18.0"; sha256="17g5zxfzsak7a0w51irc0w1w2i5ngdkx9db6rhv1fyp8mfjgaphd"; depends=[AnnotationDbi]; };
   fitCons_UCSC_hg19 = derive2 { name="fitCons.UCSC.hg19"; version="3.7.1"; sha256="19isa4x8js0pdb4k8a11bw3bzmzv6jc4jphzrvav7piqkvrgykzx"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
-  fly_db0 = derive2 { name="fly.db0"; version="3.6.0"; sha256="15kwa0yl7n0nc579xi3il7yyk4dpijsls34gyd17v8mi4v1a1kwm"; depends=[AnnotationDbi]; };
+  fly_db0 = derive2 { name="fly.db0"; version="3.7.1"; sha256="0l617pksrcgb96bm25qsxlyjz7jp7hqk1sfba516l2gd2rvbp7rs"; depends=[AnnotationDbi]; };
   geneplast_data_string_v91 = derive2 { name="geneplast.data.string.v91"; version="0.99.6"; sha256="0mc26d0sgmpmfmqsqinqv5k6vhg0hlc8hsjkcnvf369yav224nq1"; depends=[]; };
   genomewidesnp5Crlmm = derive2 { name="genomewidesnp5Crlmm"; version="1.0.6"; sha256="06dmwnjy3gb53y6nr02dmp22qzfl5d63wppazrabcqbzwimhnvp8"; depends=[]; };
   genomewidesnp6Crlmm = derive2 { name="genomewidesnp6Crlmm"; version="1.0.7"; sha256="16qcxa32fmbdcv5dck0grsnqyfcqql7wpxa1l6andv9hrvabv2jx"; depends=[]; };
@@ -487,7 +509,7 @@ in with self; {
   hugene20sttranscriptcluster_db = derive2 { name="hugene20sttranscriptcluster.db"; version="8.7.0"; sha256="0ba3yvizj9ya61rr9ik2hdxhy0q67908x16n58jjjfq8wf96h7sp"; depends=[AnnotationDbi org_Hs_eg_db]; };
   hugene21stprobeset_db = derive2 { name="hugene21stprobeset.db"; version="8.7.0"; sha256="0chkxxpfl696qqiai3i30ylpsihyicbs0hbcni6nmnhfz9k5800g"; depends=[AnnotationDbi org_Hs_eg_db]; };
   hugene21sttranscriptcluster_db = derive2 { name="hugene21sttranscriptcluster.db"; version="8.7.0"; sha256="0wk2lg74zkgxh6frmikhk4bxndiyvc1j7mhvz65w8fxfqiwfyf5i"; depends=[AnnotationDbi org_Hs_eg_db]; };
-  human_db0 = derive2 { name="human.db0"; version="3.6.0"; sha256="050cwz99yz27gyrnfhkv474vqz5rfqbv2f7wdjnaphd9xxq8xjr4"; depends=[AnnotationDbi]; };
+  human_db0 = derive2 { name="human.db0"; version="3.7.1"; sha256="1vikw70n828prccs1vlnw3f4rwp5lsp5cb02f56hih4n3mapky9f"; depends=[AnnotationDbi]; };
   human1mduov3bCrlmm = derive2 { name="human1mduov3bCrlmm"; version="1.0.4"; sha256="1p7qpzk6svafgdafljhh4k0z7pcs78qmwwfd80r0a1yhkssmp0v9"; depends=[]; };
   human1mv1cCrlmm = derive2 { name="human1mv1cCrlmm"; version="1.0.3"; sha256="1qlph3qrjv52ddzlj8pwa93zzh70x4mbdrdr7q9pan427lpck9gx"; depends=[]; };
   human370quadv3cCrlmm = derive2 { name="human370quadv3cCrlmm"; version="1.0.3"; sha256="1chjx9vsmqz2whslw1l7jn7nfn7zx6pcjfmqqm9mh81i74rzrdik"; depends=[]; };
@@ -525,7 +547,7 @@ in with self; {
   m20kcod_db = derive2 { name="m20kcod.db"; version="3.4.0"; sha256="1p2sm5j4b50iqzwcb984qrh74c3hf6yml7b8mvxlhhhvxz4iy1np"; depends=[AnnotationDbi org_Mm_eg_db]; };
   maizecdf = derive2 { name="maizecdf"; version="2.18.0"; sha256="0yfz5gjhsq4wz6j63s1b1hxjz03gsmrlfs2cdc8smq6azp3zdid4"; depends=[AnnotationDbi]; };
   maizeprobe = derive2 { name="maizeprobe"; version="2.18.0"; sha256="01h5dv5i0zaqlphkii9ipxy9wswv1srgprrpr5vmi01c9d98qsk0"; depends=[AnnotationDbi]; };
-  malaria_db0 = derive2 { name="malaria.db0"; version="3.6.0"; sha256="0874knxhybbi6idfb9rig3dhwb65xr7imkgqg1yl3scikyvpn37m"; depends=[AnnotationDbi]; };
+  malaria_db0 = derive2 { name="malaria.db0"; version="3.7.1"; sha256="1ljk5xfshp96pibw9k1yb5cl664iashb9rhc1y1bjalyidraznk7"; depends=[AnnotationDbi]; };
   medicagocdf = derive2 { name="medicagocdf"; version="2.18.0"; sha256="1clz679cc887x98c6jk93cphijkbg5r2nd9idrj5901yvh6p9n5q"; depends=[AnnotationDbi]; };
   medicagoprobe = derive2 { name="medicagoprobe"; version="2.18.0"; sha256="0w6j1pfkvb3npc8srpjifq2ywnqxhc9q090jqzmkx22x36cw9cl5"; depends=[AnnotationDbi]; };
   mgu74a_db = derive2 { name="mgu74a.db"; version="3.2.3"; sha256="0xd2gbvry061409kiwq99i13641g8x6m9kbgg4yr0x6m9dh7hxa8"; depends=[AnnotationDbi org_Mm_eg_db]; };
@@ -579,7 +601,7 @@ in with self; {
   mogene20sttranscriptcluster_db = derive2 { name="mogene20sttranscriptcluster.db"; version="8.7.0"; sha256="1s7cdjglrc9qqf3gsmhsyycfa0h5qrbk28i4z3z4mb9g6242r1r4"; depends=[AnnotationDbi org_Mm_eg_db]; };
   mogene21stprobeset_db = derive2 { name="mogene21stprobeset.db"; version="8.7.0"; sha256="0l8y2zbhykzqs9hbjhj1cys1mzdjhmi4rjv4l3v0sv5969h6sl96"; depends=[AnnotationDbi org_Mm_eg_db]; };
   mogene21sttranscriptcluster_db = derive2 { name="mogene21sttranscriptcluster.db"; version="8.7.0"; sha256="1mkw3997mqr7ssa60zpwhlyajda51smcrnlnxwif78g99yj0nrxb"; depends=[AnnotationDbi org_Mm_eg_db]; };
-  mouse_db0 = derive2 { name="mouse.db0"; version="3.6.0"; sha256="0dxx2853blbsbxn65md4zlp59pdqj7wraiq39spxlbkail76yggp"; depends=[AnnotationDbi]; };
+  mouse_db0 = derive2 { name="mouse.db0"; version="3.7.1"; sha256="1fyawqxf1m6cnl6p41q1bqb75k59n8ixn3kw8gf4kq34cldl0h9k"; depends=[AnnotationDbi]; };
   mouse4302_db = derive2 { name="mouse4302.db"; version="3.2.3"; sha256="1wdgqawqzkr39xwl32cap4ksr59p7r7i83g82h1ss4q3lm58gxpm"; depends=[AnnotationDbi org_Mm_eg_db]; };
   mouse4302cdf = derive2 { name="mouse4302cdf"; version="2.18.0"; sha256="1mpyma4x8zfs2fmmx57xw4cfs2cf9lhw71nc3icl72d7vmwidswc"; depends=[AnnotationDbi]; };
   mouse4302frmavecs = derive2 { name="mouse4302frmavecs"; version="1.5.0"; sha256="04clwkfz1gqqwrnqbavkka3hv480w6vi6c4q947qqnhw8j5jjp7s"; depends=[]; };
@@ -616,25 +638,25 @@ in with self; {
   nugomm1a520177cdf = derive2 { name="nugomm1a520177cdf"; version="3.4.0"; sha256="0skd5b76si0vydzk5qhg4f1a1j655alxflm9sqci8fi8safwj96a"; depends=[AnnotationDbi]; };
   nugomm1a520177probe = derive2 { name="nugomm1a520177probe"; version="3.4.0"; sha256="1n70k0mhv146983myjgk1cgkr9rmmcpqdv8wpkcr320qcvgf9bn7"; depends=[AnnotationDbi]; };
   oligoData = derive2 { name="oligoData"; version="1.8.0"; sha256="1d1yfms3jv2c4s255xnh8yxwijrj35skw3nxds7l46y88lg3qn8y"; depends=[oligo]; };
-  org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.6.0"; sha256="1bqwvg6shkx9764yz8qzy08yhqjajhzgbjmk9cn3fxjipk9v523k"; depends=[AnnotationDbi]; };
-  org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.6.0"; sha256="0vfnfg0cn5iprrsyqn4gjsq9p5fz7imrl16v220497af9k9zg88b"; depends=[AnnotationDbi]; };
-  org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.6.0"; sha256="1lixfs1w5bnaxc9fyrvwgz9ldp4kxslgv7lm4icvcn517q3knsi4"; depends=[AnnotationDbi]; };
-  org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.6.0"; sha256="0jvmpm2yk4lr6cjdzqjq6dl4gjfgzb12v8xxws6a1gjbkwyirxd2"; depends=[AnnotationDbi]; };
-  org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.6.0"; sha256="1xzwi14l2ia5701rzfxl3qmf6nzdlg1a6k4p2q75fxw7c43nkp53"; depends=[AnnotationDbi]; };
-  org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.6.0"; sha256="0zljw8f7b1c1xlb0rpb3m9p1dj63q7m4ai5dp5qm26wjlhqyk0zx"; depends=[AnnotationDbi]; };
-  org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.6.0"; sha256="0hj1zxgxxn7ljl1apmlnf2niyb5gjqjv8y0mb8961y8b2iq7wflf"; depends=[AnnotationDbi]; };
-  org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.6.0"; sha256="0pqxbnry2k621szw7zpfg6yn1m3icz3l7l80xh5q4gc2vqri59i8"; depends=[AnnotationDbi]; };
-  org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.6.0"; sha256="04gscsr3mrqdprn8jc2ns1mf3h9nm19zh68fayjf0kb1j91k8hdd"; depends=[AnnotationDbi]; };
-  org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.6.0"; sha256="0jm7k4l8bxrbkhhn1bbc0l9622mszk6c2galrgc3bc091frz1w56"; depends=[AnnotationDbi]; };
-  org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.6.0"; sha256="0jav4c8av85380lbra41m33ymqy0kx4czni0kn3cpsa3sfk3ij17"; depends=[AnnotationDbi]; };
-  org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.6.0"; sha256="0l54hi68y6j5jjk88rgy7jhdcjbz6pg474kbpcj6x9z77i0mcfgr"; depends=[AnnotationDbi]; };
-  org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.6.0"; sha256="1y60cvnw5a7nnxryyw97fzrpsic4napsidhrd61qpp6nkbc3aa73"; depends=[AnnotationDbi]; };
-  org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.6.0"; sha256="08kfwsyi0bbmkfqyjgj4m04dmav9nzx6kskaw90ayrj2jv70ci77"; depends=[AnnotationDbi]; };
-  org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.6.0"; sha256="198w077sifyzsrx2vcb8vbrlk6ln6q74lrgkh81sbwshik7nmy4f"; depends=[AnnotationDbi]; };
-  org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.6.0"; sha256="0v2qx1hghlwsgf4lzax6wf3snc17ll4rrhq6za1cf1a0bgvjf28f"; depends=[AnnotationDbi]; };
-  org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.6.0"; sha256="0pprpk91j95ycr7hnd6a1n0aflbn3ibaizl2n2gsfwyjs2vyzq52"; depends=[AnnotationDbi]; };
-  org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.6.0"; sha256="02mldrxqmfwlf4fjlc6i9qv786zgr9cggwrfpkn5inj28hh6s29j"; depends=[AnnotationDbi]; };
-  org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.6.0"; sha256="0p76dj2l9r1rsxq0yh9fsqp22z7jg7i9sq43v5kc32pfgn4nizas"; depends=[AnnotationDbi]; };
+  org_Ag_eg_db = derive2 { name="org.Ag.eg.db"; version="3.7.0"; sha256="101xvx62y1y2kbiv9j427879zhjindm1hzb9iscinmf10lwhyj8q"; depends=[AnnotationDbi]; };
+  org_At_tair_db = derive2 { name="org.At.tair.db"; version="3.7.0"; sha256="0i5dv4lc8dh27ipf37wk84y75fmnbja0bbllzbchb459c9bpwcf9"; depends=[AnnotationDbi]; };
+  org_Bt_eg_db = derive2 { name="org.Bt.eg.db"; version="3.7.0"; sha256="0vdfgh2yrawz8bbszgxl5vvq6iqvn25p5l01j7zhlmx035jcbfak"; depends=[AnnotationDbi]; };
+  org_Ce_eg_db = derive2 { name="org.Ce.eg.db"; version="3.7.0"; sha256="1w5br1ss4ha8wv4v2saj7cmbjc2jw0dyj2f2y269l078z31wcnaz"; depends=[AnnotationDbi]; };
+  org_Cf_eg_db = derive2 { name="org.Cf.eg.db"; version="3.7.0"; sha256="1y3kda375f327bv31cfp470546hvcdw5a8bl3z5h1dm6c556z7cl"; depends=[AnnotationDbi]; };
+  org_Dm_eg_db = derive2 { name="org.Dm.eg.db"; version="3.7.0"; sha256="1pqjrzlyg72bjpy8zsxvaglc7jsv176bnyi87xdajmkvsgxpm7b3"; depends=[AnnotationDbi]; };
+  org_Dr_eg_db = derive2 { name="org.Dr.eg.db"; version="3.7.0"; sha256="1xs5wsbcpy0iwbjyiv7fax57djqc529ai5fk1qfsdcvlja3cpglx"; depends=[AnnotationDbi]; };
+  org_EcK12_eg_db = derive2 { name="org.EcK12.eg.db"; version="3.7.0"; sha256="0ii3k9b0rr6bkb16m108if9liinw7md4mgh8fz4yd4gh8a7zcli7"; depends=[AnnotationDbi]; };
+  org_EcSakai_eg_db = derive2 { name="org.EcSakai.eg.db"; version="3.7.0"; sha256="1zcqbr4sds24mcggg71g4j6v0wp7fri75d1l0bhp0x245b9k5vnw"; depends=[AnnotationDbi]; };
+  org_Gg_eg_db = derive2 { name="org.Gg.eg.db"; version="3.7.0"; sha256="0lyzznrnyyw9lsdp58a0sc5jw2lrccsv44dvrza2ix8mx46gplis"; depends=[AnnotationDbi]; };
+  org_Hs_eg_db = derive2 { name="org.Hs.eg.db"; version="3.7.0"; sha256="1qxz9l80yg3qdqszs6dsscp7lrpfi1bgd0pxh9j7q34vprzwhdim"; depends=[AnnotationDbi]; };
+  org_Mm_eg_db = derive2 { name="org.Mm.eg.db"; version="3.7.0"; sha256="1i3nvrd3wjigf1rmgxq1p5xxc3p8v02h5gwi62s30rkrsyjjfjxx"; depends=[AnnotationDbi]; };
+  org_Mmu_eg_db = derive2 { name="org.Mmu.eg.db"; version="3.7.0"; sha256="1c6mwknyf8cq824qm3cax0a2l3wd2h9dw6pylhwm0x7viz2xf2iz"; depends=[AnnotationDbi]; };
+  org_Pf_plasmo_db = derive2 { name="org.Pf.plasmo.db"; version="3.7.0"; sha256="0s3ibaqvjw3sg1j22pfgzw1gcb9pv9b8a4livj9ph73jqhx03r5i"; depends=[AnnotationDbi]; };
+  org_Pt_eg_db = derive2 { name="org.Pt.eg.db"; version="3.7.0"; sha256="1n9qd34gjkjgbbz07h6ibzgbq9id81z6ni01vmaki3554gmfk3dl"; depends=[AnnotationDbi]; };
+  org_Rn_eg_db = derive2 { name="org.Rn.eg.db"; version="3.7.0"; sha256="10293py12jar1ab3s1b872c5gxpw9d2d5sxk4iq5g38i0gcf5gsc"; depends=[AnnotationDbi]; };
+  org_Sc_sgd_db = derive2 { name="org.Sc.sgd.db"; version="3.7.0"; sha256="0dwaw9v4c1d5wr6skaf97s013wqwqm31bybhggm1fm59aa6mkdwv"; depends=[AnnotationDbi]; };
+  org_Ss_eg_db = derive2 { name="org.Ss.eg.db"; version="3.7.0"; sha256="1s5zizma3ba00z8q1k9h4fajxwj3f2jg1034rfwqlhsscwrhv5ih"; depends=[AnnotationDbi]; };
+  org_Xl_eg_db = derive2 { name="org.Xl.eg.db"; version="3.7.0"; sha256="002i6aacrirvyzi14r26fgr6cqc0bfwn0wg83sbligp2dwqm0bb4"; depends=[AnnotationDbi]; };
   paeg1acdf = derive2 { name="paeg1acdf"; version="2.18.0"; sha256="127pgxxp5wp3hgmafbzdzsk4gqnllq1m1gcsfyzkvpkvmbn4aa9n"; depends=[AnnotationDbi]; };
   paeg1aprobe = derive2 { name="paeg1aprobe"; version="2.18.0"; sha256="0hbyd402wf9nzy2g93nhnf2zsi9jvhgfk0llxlyfk0kqxs0y4byy"; depends=[AnnotationDbi]; };
   pd_081229_hg18_promoter_medip_hx1 = derive2 { name="pd.081229.hg18.promoter.medip.hx1"; version="0.99.4"; sha256="1h4925dmw0vfsnhllg55gswq3sxfmx9rcjzifdvgs9y27399psrr"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite]; };
@@ -811,7 +833,7 @@ in with self; {
   phastCons100way_UCSC_hg19 = derive2 { name="phastCons100way.UCSC.hg19"; version="3.7.2"; sha256="1jmc4k4zgkx5vr2plnidnd9bidlwlb0kr7mjg60cqjw7dq7jl1fa"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
   phastCons100way_UCSC_hg38 = derive2 { name="phastCons100way.UCSC.hg38"; version="3.7.1"; sha256="0dka39rvx4d3wbcjypcgvc19s6cnxkkfywa4irv23kpibq1sjyv0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
   phastCons7way_UCSC_hg38 = derive2 { name="phastCons7way.UCSC.hg38"; version="3.7.1"; sha256="105isdrb3nsy30wd8yy9vrrv8b7c8izc11xqqixg6rcriacd0rl0"; depends=[BSgenome GenomeInfoDb GenomicRanges GenomicScores IRanges S4Vectors]; };
-  pig_db0 = derive2 { name="pig.db0"; version="3.6.0"; sha256="0qiym7v0z6rr68191lj5hnkzdjc4k61cbjvzj59x5aygba6clm8y"; depends=[AnnotationDbi]; };
+  pig_db0 = derive2 { name="pig.db0"; version="3.7.1"; sha256="06hwggby003y64mhrk4b48zxnh3csqi5hm9y42iccz17qs7j1jmi"; depends=[AnnotationDbi]; };
   plasmodiumanophelescdf = derive2 { name="plasmodiumanophelescdf"; version="2.18.0"; sha256="1vs36091djinn3g6rjhmy9xfdyi58365zbcjc9mf50adnp2i5fq9"; depends=[AnnotationDbi]; };
   plasmodiumanophelesprobe = derive2 { name="plasmodiumanophelesprobe"; version="2.18.0"; sha256="03hfq51nrpmx8ihc48jiih6bk99irrgal9x7i7mgcv8xd508gcsy"; depends=[AnnotationDbi]; };
   poplarcdf = derive2 { name="poplarcdf"; version="2.18.0"; sha256="0j28czs936j2wgwp63qbwl1mjcflcrx7ir88jzxkkw7411ch1gl1"; depends=[AnnotationDbi]; };
@@ -840,14 +862,14 @@ in with self; {
   ragene20sttranscriptcluster_db = derive2 { name="ragene20sttranscriptcluster.db"; version="8.7.0"; sha256="135cgn92raa6f9yiw4k25rn04rpg5mdnf969l66x4s1jcc0rwscq"; depends=[AnnotationDbi org_Rn_eg_db]; };
   ragene21stprobeset_db = derive2 { name="ragene21stprobeset.db"; version="8.7.0"; sha256="0lp4prymrm3cp8yq1hba9bylw22hcvlx7piqpvjx51hj79yrwdig"; depends=[AnnotationDbi org_Rn_eg_db]; };
   ragene21sttranscriptcluster_db = derive2 { name="ragene21sttranscriptcluster.db"; version="8.7.0"; sha256="1b7s2r4w1yy2v3srs6n931zc64qf58nq4apmq2ag5nx50wspima1"; depends=[AnnotationDbi org_Rn_eg_db]; };
-  rat_db0 = derive2 { name="rat.db0"; version="3.6.0"; sha256="1dxmdc4pvr3bl5vc6pw10ddqknxs5ggmr1zvmxgrk8girgkpja1h"; depends=[AnnotationDbi]; };
+  rat_db0 = derive2 { name="rat.db0"; version="3.7.1"; sha256="1k7vx0iihb5sgaicrxbv33fi7kjwqfskbwn37aj769nqxq66fx8h"; depends=[AnnotationDbi]; };
   rat2302_db = derive2 { name="rat2302.db"; version="3.2.3"; sha256="0vj4vkx091m34xqjh6gv6m2iqszvn5rq3kvnpyq3fin5v42wrsr1"; depends=[AnnotationDbi org_Rn_eg_db]; };
   rat2302cdf = derive2 { name="rat2302cdf"; version="2.18.0"; sha256="1748rc6yypd7y8wgr1qg632pcsxx0fkxjz6b3z4fhblgdllhy9wk"; depends=[AnnotationDbi]; };
   rat2302probe = derive2 { name="rat2302probe"; version="2.18.0"; sha256="1zwjgbcb9d4ib6z1iyjz8x11lq0b5gqs08y6j3idb5wf3i2p521v"; depends=[AnnotationDbi]; };
   ratCHRLOC = derive2 { name="ratCHRLOC"; version="2.1.6"; sha256="0mgk6lwvvdwjzjh4r1q1q6nfnx4vqx9iy6gmbrb9f31jf30hqnsb"; depends=[]; };
   rattoxfxcdf = derive2 { name="rattoxfxcdf"; version="2.18.0"; sha256="0q84lfaxnnj2zbm5q8xswa1md15fjj4i0djnqr835ixzn7px4yqn"; depends=[AnnotationDbi]; };
   rattoxfxprobe = derive2 { name="rattoxfxprobe"; version="2.18.0"; sha256="1kp159553rkcn9yh6x3yph3yjz2ja21wi9j5ax03qnhwlsl1x8ik"; depends=[AnnotationDbi]; };
-  reactome_db = derive2 { name="reactome.db"; version="1.64.0"; sha256="1wwgi5wr8ax0wns32zkz92wzh8ivq3q19m4pxvs8rrgwnlbyp81d"; depends=[AnnotationDbi]; };
+  reactome_db = derive2 { name="reactome.db"; version="1.66.0"; sha256="18kh68sx9825bi92904xcygjh9jsbxyhsp4ghw1wh160na65gy3v"; depends=[AnnotationDbi]; };
   rgu34a_db = derive2 { name="rgu34a.db"; version="3.2.3"; sha256="1s2sd5bqlj4qhamhrnb9byxn8nc7z265mqy7zzkgxcd6a2k472vp"; depends=[AnnotationDbi org_Rn_eg_db]; };
   rgu34acdf = derive2 { name="rgu34acdf"; version="2.18.0"; sha256="08z9f16xp1m2mwl9vlmbffxl4zyyl8cgzf6wp66rrm32lvl0nbwq"; depends=[AnnotationDbi]; };
   rgu34aprobe = derive2 { name="rgu34aprobe"; version="2.18.0"; sha256="1gjxyq9128jgv3ic386f84rajgf3wz7yi2dja80y0ff4m0a48dlh"; depends=[AnnotationDbi]; };
@@ -861,10 +883,11 @@ in with self; {
   rgug4105a_db = derive2 { name="rgug4105a.db"; version="3.2.3"; sha256="0lq8k95qm0q7j65nf16p3f09dn9zs87n3k561wxrgi2lb0pf6j40"; depends=[AnnotationDbi org_Rn_eg_db]; };
   rgug4130a_db = derive2 { name="rgug4130a.db"; version="3.2.3"; sha256="0zlcn9spw23bj3px9z1l2f5afn09zbr6rv0nbd2h6dd12wrvy1zk"; depends=[AnnotationDbi org_Rn_eg_db]; };
   rgug4131a_db = derive2 { name="rgug4131a.db"; version="3.2.3"; sha256="1r272jf9cflf1yf4bznp4d59h7bd7adh1i3rf890h5ffc0xzf5cq"; depends=[AnnotationDbi org_Rn_eg_db]; };
-  rhesus_db0 = derive2 { name="rhesus.db0"; version="3.6.0"; sha256="1vlqd4qk0wph3vmd125dw9iipgljf2s3i46kr7bjswj0k9k4385h"; depends=[AnnotationDbi]; };
+  rhesus_db0 = derive2 { name="rhesus.db0"; version="3.7.1"; sha256="1k695lwbwznk4i03dqpfyk0nx4s9n1qlgh9ccfxjy591lraj7b4j"; depends=[AnnotationDbi]; };
   rhesuscdf = derive2 { name="rhesuscdf"; version="2.18.0"; sha256="0q2alkxm80wkzaf0q80df27q30qkswybavz05x6ywsihbs9h0nb8"; depends=[AnnotationDbi]; };
   rhesusprobe = derive2 { name="rhesusprobe"; version="2.18.0"; sha256="0fd8pvwvpcmx41k80nbccjxllh39fvjf7l9dr8facisl1x7gsfil"; depends=[AnnotationDbi]; };
   ri16cod_db = derive2 { name="ri16cod.db"; version="3.4.0"; sha256="1xz533vxjdyxx1wkks0kgk6b90sxs44iqcsvyds0xcm573bx8c6q"; depends=[AnnotationDbi org_Rn_eg_db]; };
+  ribosomaldatabaseproject11_5MgDb = derive2 { name="ribosomaldatabaseproject11.5MgDb"; version="1.00.0"; sha256="04ppa4k8p54bmkq3jm41h0v4lb5hz95cmnakfzmqfml00ir04mxp"; depends=[metagenomeFeatures]; };
   ricecdf = derive2 { name="ricecdf"; version="2.18.0"; sha256="07lsw9rklk2rsvbkcj1ci8hg2x68k3qpkx9yw0cmd7rg5fvydgns"; depends=[AnnotationDbi]; };
   riceprobe = derive2 { name="riceprobe"; version="2.18.0"; sha256="0w6qvszdmnipn3v2bld46x7my2a9hni0jbxd0y1d6xcrrgs951ra"; depends=[AnnotationDbi]; };
   rnu34_db = derive2 { name="rnu34.db"; version="3.2.3"; sha256="0ahridq75rmjyaivmlhn428wg712zv3003cbzzrajm9w6nibbfgk"; depends=[AnnotationDbi org_Rn_eg_db]; };
@@ -878,6 +901,7 @@ in with self; {
   rwgcod_db = derive2 { name="rwgcod.db"; version="3.4.0"; sha256="1k0fpnv314lx2jf3mm6xfqa3jx353sp42awxqys9byzhg9zyj2j3"; depends=[AnnotationDbi org_Rn_eg_db]; };
   saureuscdf = derive2 { name="saureuscdf"; version="2.18.0"; sha256="0vmm3fy10dzzmaq22ah4fb0k3fs1gdbhnsi8mxz7xgp27dcan29j"; depends=[AnnotationDbi]; };
   saureusprobe = derive2 { name="saureusprobe"; version="2.18.0"; sha256="0s5ma3hh7ncsi4dq33r3hwffk85x3gvjbm5cslppbsd0r0bjwkia"; depends=[AnnotationDbi]; };
+  silva128_1MgDb = derive2 { name="silva128.1MgDb"; version="1.00.0"; sha256="0pwwxxa55d3919rbczg5iskd03ignimk80m52kfi930b1kdg9qc2"; depends=[metagenomeFeatures]; };
   soybeancdf = derive2 { name="soybeancdf"; version="2.18.0"; sha256="1dlwxdslm827661z6f4z2hwr7wpwqfzvizhvv63p86ll7l6gs3s8"; depends=[AnnotationDbi]; };
   soybeanprobe = derive2 { name="soybeanprobe"; version="2.18.0"; sha256="06dpwqad7q3wyq0bsgpwkw8kx1gq5fy1s1lw632xrvgcid2fsmf8"; depends=[AnnotationDbi]; };
   sugarcanecdf = derive2 { name="sugarcanecdf"; version="2.18.0"; sha256="0wghc6wr7iwkql63m3wibjjdcdpqd53z0g5rxdh553sjb0ca2n7z"; depends=[AnnotationDbi]; };
@@ -898,8 +922,8 @@ in with self; {
   vitisviniferaprobe = derive2 { name="vitisviniferaprobe"; version="2.18.0"; sha256="1ggz1s37dwvrkhj4vx2civyhap7bgqsshy33lk14z4fjsayfi39a"; depends=[AnnotationDbi]; };
   wheatcdf = derive2 { name="wheatcdf"; version="2.18.0"; sha256="1gmbrdilqvm54h6nkb1cm01ki8aipiywd4qj8gpwlm2hqrimr8kr"; depends=[AnnotationDbi]; };
   wheatprobe = derive2 { name="wheatprobe"; version="2.18.0"; sha256="1fifi3pvzdrg356idwz0kx7qlf5mssdxlyvwpn3cjgw0z7n7cnw8"; depends=[AnnotationDbi]; };
-  worm_db0 = derive2 { name="worm.db0"; version="3.6.0"; sha256="0k99b64gkzmvmrypd5r96k0y2i4ph0kr70kkfnhmmxgwgd8wg0db"; depends=[AnnotationDbi]; };
-  xenopus_db0 = derive2 { name="xenopus.db0"; version="3.6.0"; sha256="1jgdidzpka00w21358rj2lrz1chh518iyqlrj3c5rsamrisdyj2c"; depends=[AnnotationDbi]; };
+  worm_db0 = derive2 { name="worm.db0"; version="3.7.1"; sha256="0p5rzmkars7kl4y4mlq6jbmgp1mdfw3jcnvhl50dnpqc7h28y4xf"; depends=[AnnotationDbi]; };
+  xenopus_db0 = derive2 { name="xenopus.db0"; version="3.7.1"; sha256="067vs7b2slmragqqnfpgy6m187cz1rx9r5agizrjycndzdzkpy3k"; depends=[AnnotationDbi]; };
   xenopuslaeviscdf = derive2 { name="xenopuslaeviscdf"; version="2.18.0"; sha256="1bcz1hr7gxw6ac4qvw0giph6hfcf5i9b11s274ypq512qc1d32iq"; depends=[AnnotationDbi]; };
   xenopuslaevisprobe = derive2 { name="xenopuslaevisprobe"; version="2.18.0"; sha256="0prb14zn2gvgxq8w0y21x1ng51cn3bgjhkppf7zkmnq1xkzvq0pw"; depends=[AnnotationDbi]; };
   xlaevis_db = derive2 { name="xlaevis.db"; version="3.2.3"; sha256="0cdi71c8pflb8n4yfxc0wmfi51w6z0dlz7nw5hv0hkx547v79d53"; depends=[AnnotationDbi org_Xl_eg_db]; };
@@ -911,7 +935,7 @@ in with self; {
   ye6100subbcdf = derive2 { name="ye6100subbcdf"; version="2.18.0"; sha256="1169hv56981b915rlr5w5sn6ppyjd8as7f4k1hbjzadrdrl3glwp"; depends=[AnnotationDbi]; };
   ye6100subccdf = derive2 { name="ye6100subccdf"; version="2.18.0"; sha256="0mhr4zd33gfvvivc17k7fb6nvmhq6h3q0xbx2zl09zd6qk09kizm"; depends=[AnnotationDbi]; };
   ye6100subdcdf = derive2 { name="ye6100subdcdf"; version="2.18.0"; sha256="11b1fflgc34lrj4yf1p7way5n83cm9c7znsbxpzlwddwyy8qib30"; depends=[AnnotationDbi]; };
-  yeast_db0 = derive2 { name="yeast.db0"; version="3.6.0"; sha256="0xv4v1ybcgz5ha7g98zkfmi6mw0ywrdfspzb39rj13np9bwrqfcp"; depends=[AnnotationDbi]; };
+  yeast_db0 = derive2 { name="yeast.db0"; version="3.7.1"; sha256="1shjbflvlxipiyapwd6jpqs9mp8nyr3j63wcpnaznmxv0z5k0fw8"; depends=[AnnotationDbi]; };
   yeast2_db = derive2 { name="yeast2.db"; version="3.2.3"; sha256="1xns0129ifklipbardybkjyxfwnlklavq0k6s15wk2iwk7vxa33s"; depends=[AnnotationDbi org_Sc_sgd_db]; };
   yeast2cdf = derive2 { name="yeast2cdf"; version="2.18.0"; sha256="0c68val9x8bfnv4xx0vag9dxwsx5q8dzbj0dpha3nshh12jw48w9"; depends=[AnnotationDbi]; };
   yeast2probe = derive2 { name="yeast2probe"; version="2.18.0"; sha256="125nif693qcmxc0nnnz917f9avggcdr8g9rfvx2qdc54a2l7vdb7"; depends=[AnnotationDbi]; };
@@ -920,7 +944,7 @@ in with self; {
   ygs98frmavecs = derive2 { name="ygs98frmavecs"; version="1.3.0"; sha256="1xrm1209xnknwvad7nvg1a0mbxz15z12yd4x5bia3cq03zcmzf9m"; depends=[]; };
   ygs98probe = derive2 { name="ygs98probe"; version="2.18.0"; sha256="0awf6z4j2vb2jk9a9j2r512yd3m31660y68pasa9mp488m270a3q"; depends=[AnnotationDbi]; };
   zebrafish_db = derive2 { name="zebrafish.db"; version="3.2.3"; sha256="1n6p04hlm5c32fnficx294s7n7izy5460avagw8hx1g5xryhdzqk"; depends=[AnnotationDbi org_Dr_eg_db]; };
-  zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.6.0"; sha256="1c7m109yrpvzhj330n8rj1ppvwxr96nlhhwc48rj687qd1fnbj48"; depends=[AnnotationDbi]; };
+  zebrafish_db0 = derive2 { name="zebrafish.db0"; version="3.7.1"; sha256="1x9s6sxxgijjnrvg4fggnqhv10zwsfw6hy1qa93rjmpgqpr7ad20"; depends=[AnnotationDbi]; };
   zebrafishcdf = derive2 { name="zebrafishcdf"; version="2.18.0"; sha256="0sq1xqhblbilvaiabhqyl9gxdj3jg576vgq8v0cls1zvvx0isrx0"; depends=[AnnotationDbi]; };
   zebrafishprobe = derive2 { name="zebrafishprobe"; version="2.18.0"; sha256="1pb8z2rdhq11hq391xyi236scyafbp56kbhhwsnha36yygz5drw0"; depends=[AnnotationDbi]; };
 }
diff --git a/pkgs/development/r-modules/bioc-experiment-packages.nix b/pkgs/development/r-modules/bioc-experiment-packages.nix
index fbf8b26f0ea1..04f4d25def24 100644
--- a/pkgs/development/r-modules/bioc-experiment-packages.nix
+++ b/pkgs/development/r-modules/bioc-experiment-packages.nix
@@ -19,31 +19,36 @@ in with self; {
   AmpAffyExample = derive2 { name="AmpAffyExample"; version="1.21.0"; sha256="1k1qzxakbavm10bd0ybs1gk97w1y825iqvwimn0cr128qw2xxkyj"; depends=[affy]; };
   AneuFinderData = derive2 { name="AneuFinderData"; version="1.9.0"; sha256="0m3pvsdd2y1947zl582791bsip95j41fc6g9gbin3cg51y7lb6xr"; depends=[]; };
   AshkenazimSonChr21 = derive2 { name="AshkenazimSonChr21"; version="1.11.0"; sha256="08r5430gqsmkbh4n49ac2fl0m24zmqjnc9yxppw5mr0d4n5l26y5"; depends=[]; };
-  BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.19.0"; sha256="177zapqbf8ipavs1sp1gby99dbbzsyzgxyjhr258r7849b388k1v"; depends=[beadarray GEOquery limma]; };
-  BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.1.1"; sha256="1x1cdq226gr69wlnl543ynvwrxd7fr7znvvh6x1ka8iw357sfglf"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; };
+  AssessORFData = derive2 { name="AssessORFData"; version="0.99.2"; sha256="0yi2vxzg21nkqlywcpv6n2vzksl77cvkc42ii9p7gy9kpv56553k"; depends=[DECIPHER]; };
+  BeadArrayUseCases = derive2 { name="BeadArrayUseCases"; version="1.19.1"; sha256="08c7aqnh4wnhnalrvchcyhy5vmxq5xkq26pmp9xjn2x4zwf4156y"; depends=[beadarray GEOquery limma]; };
+  BloodCancerMultiOmics2017 = derive2 { name="BloodCancerMultiOmics2017"; version="1.1.4"; sha256="1hh1l134cmbcmyc40fwfrwrbx6qyiv9a3bz8hp9vbdf1vslhcnpk"; depends=[beeswarm Biobase DESeq2 devtools dplyr ggdendro ggplot2 glmnet gtable ipflasso RColorBrewer reshape2 scales SummarizedExperiment survival tibble]; };
   CCl4 = derive2 { name="CCl4"; version="1.19.0"; sha256="1j4q7mm4lwi3rcf0y6zj36xc6n7c8y6l8iv9ac4avbgvr1rvlxaq"; depends=[Biobase limma]; };
   CLL = derive2 { name="CLL"; version="1.21.0"; sha256="103lmn87zw73sx30ln6g4382ydpi97b1zsm7www8bwlnw6zx7k7g"; depends=[affy Biobase]; };
-  CLLmethylation = derive2 { name="CLLmethylation"; version="1.1.0"; sha256="1rwnc84plgkzlz78gawjhjf4lf6gbdzgdhjp6ap49bqzgpp3c10a"; depends=[ExperimentHub SummarizedExperiment]; };
+  CLLmethylation = derive2 { name="CLLmethylation"; version="1.1.1"; sha256="1vbvxb3bnwx4ngxkk6vrhshcfyrv0fvs3vhlqk0j9q1mhxg8p3a9"; depends=[ExperimentHub SummarizedExperiment]; };
   COHCAPanno = derive2 { name="COHCAPanno"; version="1.17.0"; sha256="199xz5qwp06kr3smr25vx2w25hmzf7qbpaw18aj7bvccsdsyvky9"; depends=[]; };
   CONFESSdata = derive2 { name="CONFESSdata"; version="1.9.0"; sha256="091ydgxqldrcr3b73pqyk6555yyclnnr4yizi0kknqasx33sb802"; depends=[]; };
   COPDSexualDimorphism_data = derive2 { name="COPDSexualDimorphism.data"; version="1.17.0"; sha256="1pgfqrp6cx94marm96swqq8c9nr00xdmlf62hvmacqwspsajbnya"; depends=[]; };
   COSMIC_67 = derive2 { name="COSMIC.67"; version="1.17.0"; sha256="0qd0xbc8hy25hyy8bilim2w5inhwz88rypbqc8vjlg54r2yl12nh"; depends=[GenomicRanges SummarizedExperiment VariantAnnotation]; };
-  CRCL18 = derive2 { name="CRCL18"; version="0.115.0"; sha256="0y2v5fmlfj7hzkvw1l116vnczjnmhxd77gvdqjjynl9cgvlx0smq"; depends=[Biobase]; };
+  CRCL18 = derive2 { name="CRCL18"; version="1.1.0"; sha256="1hxh7fldfy2v9sii5clwi9i568dcc742nd4da0048p4pm87qxcsv"; depends=[Biobase]; };
   CardinalWorkflows = derive2 { name="CardinalWorkflows"; version="1.13.0"; sha256="1rjp3ybc0yx8sjqp4ahadgymlld2l2hn3dxxvpng06qpp5jch0zq"; depends=[Cardinal]; };
   CellMapperData = derive2 { name="CellMapperData"; version="1.7.0"; sha256="0zjssdm2z7i6bcp781x9lz09dmh5krvvxg5a0la79dj5vvs72cjp"; depends=[CellMapper ExperimentHub]; };
-  ChIC_data = derive2 { name="ChIC.data"; version="1.1.0"; sha256="07gyyv7bjfxa978c40lkh65m0x2zi855mapvwgpazqgq5qhxyfya"; depends=[caret]; };
+  ChAMPdata = derive2 { name="ChAMPdata"; version="2.13.0"; sha256="1xa5lcxf7npb8mykqpx84vpjavl9xzwl24nlsaaw3gk75cfrhpkx"; depends=[BiocGenerics GenomicRanges]; };
+  ChIC_data = derive2 { name="ChIC.data"; version="1.1.4"; sha256="0s8nm65kwk2cbs8g66zc46q31nd66fdm0kk0d6gxl6zhv0p3d8dv"; depends=[caret]; };
+  ChIPXpressData = derive2 { name="ChIPXpressData"; version="1.19.0"; sha256="1f32hzqgpiclby25223ksp63xlhdk7d52sf2xc97hpjig0571630"; depends=[bigmemory]; };
   ChIPexoQualExample = derive2 { name="ChIPexoQualExample"; version="1.5.0"; sha256="0y2s4hw7hbfspy1hjsqkaw72pm26k911699k6sw4jhvjh7mkvjbf"; depends=[]; };
   ChimpHumanBrainData = derive2 { name="ChimpHumanBrainData"; version="1.19.0"; sha256="1i2aj1vxak6b53mpcd36q2xwgpddllqpqz3wii7rrsa9mg2gaaza"; depends=[affy hexbin limma qvalue statmod]; };
   ConnectivityMap = derive2 { name="ConnectivityMap"; version="1.17.0"; sha256="1zz0vq192jfnp494mp61xmkxyd94bbh9xs268jd7ynnlpjp9phsx"; depends=[]; };
-  CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.13.0"; sha256="131yanjrw3zsp3ly9i3s2fla7v97wdrrcajsqw38fi8nrln24qbf"; depends=[]; };
-  DAPARdata = derive2 { name="DAPARdata"; version="1.11.0"; sha256="0hf2ijncpsjyyvdwnpfb8agsz3w6ph8ga844cdf5q18l51iyprb4"; depends=[knitr MSnbase]; };
+  CopyNeutralIMA = derive2 { name="CopyNeutralIMA"; version="0.99.14"; sha256="1lvdacdazpp071grc75gjxmhwjzkm22lhwzjvf6baclq9qfjgqp2"; depends=[ExperimentHub Rdpack]; };
+  CopyhelpeR = derive2 { name="CopyhelpeR"; version="1.13.1"; sha256="014jissvpkj2d0sz3r1dr5c5qs29hbvs9jvm8bl86mld8ff3nlkc"; depends=[]; };
+  DAPARdata = derive2 { name="DAPARdata"; version="1.11.4"; sha256="06qwja8qkbix6ial81yv1q3bxrdmqrgridina094p1xrxbfrn5sb"; depends=[knitr MSnbase]; };
   DLBCL = derive2 { name="DLBCL"; version="1.21.0"; sha256="0advvjkd6skynjjnz4s9mdnh0l9l2zhn4n9x0kg23dmsg4r8vqm7"; depends=[Biobase]; };
   DMRcatedata = derive2 { name="DMRcatedata"; version="1.17.0"; sha256="1a669jjvkjjklbh2kxrv3y2clfps067w6w19y1yr2a8wc7crbl4a"; depends=[GenomicRanges]; };
   DREAM4 = derive2 { name="DREAM4"; version="1.17.0"; sha256="0s3y3wgg487p5fswbin4237mrm9kzbq12a84jiixhql1j2ysbhcs"; depends=[SummarizedExperiment]; };
-  DeSousa2013 = derive2 { name="DeSousa2013"; version="1.17.0"; sha256="0ahldh3d6phm20ljnyx0hz7q0zk8r3i7i39wy1arqz0rqgmgzfql"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; };
-  DmelSGI = derive2 { name="DmelSGI"; version="1.13.0"; sha256="1drs5gp2vh7m61wj6ypa9bpyn8igmzsql0ddyzpgp8sa99w0w7kd"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; };
-  DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.19.0"; sha256="04gphwyic256x2wzapr9kqzq1z10yl9a2s64m4dn3bwy4613b6rv"; depends=[EBImage]; };
+  DeSousa2013 = derive2 { name="DeSousa2013"; version="1.17.2"; sha256="1xz1l83my34kwr4wk6vq3q5yzd3i0ky5qm44wx65f4d92hn7k3v5"; depends=[affy AnnotationDbi Biobase cluster ConsensusClusterPlus frma frmaTools gplots hgu133plus2_db hgu133plus2frmavecs pamr rgl ROCR siggenes survival sva]; };
+  DmelSGI = derive2 { name="DmelSGI"; version="1.13.1"; sha256="0v25rb5myhki1vvmmzyhpa8n0vv623zj6lh26a10iq4i5bvda9c5"; depends=[abind gplots igraph knitr limma rhdf5 TSP]; };
+  DonaPLLP2013 = derive2 { name="DonaPLLP2013"; version="1.19.1"; sha256="1sbhq0m67v5swyafrn74cjz4h3r6d1qmn2skkz3xwjgm70qpbjrb"; depends=[EBImage]; };
   DrugVsDiseasedata = derive2 { name="DrugVsDiseasedata"; version="1.17.0"; sha256="05xykgmiakw6n8f1b86wbyjzs9v6b7qz8119pwvbfjgncgwqmcx9"; depends=[]; };
+  DuoClustering2018 = derive2 { name="DuoClustering2018"; version="0.99.2"; sha256="0f4ps36wd1yll9w4zkx6n4kz0svqfajmb11a5c51b55572siq203"; depends=[dplyr ExperimentHub ggplot2 ggthemes magrittr mclust purrr reshape2 tidyr viridis]; };
   DvDdata = derive2 { name="DvDdata"; version="1.17.0"; sha256="0x5crrym68rw2r9nmb33j1n1f5rxpj5rzn8b5j403ikxywfwxblh"; depends=[]; };
   EGSEAdata = derive2 { name="EGSEAdata"; version="1.9.0"; sha256="1bmxm535h9ilnpbm196rf40543kh1yf5ldqxilhiyx5k0qaaihmz"; depends=[]; };
   ELMER_data = derive2 { name="ELMER.data"; version="2.5.5"; sha256="192jdmxl17m8s1r95c2lizh2r5zpazvx0az8xj22dva0mrazql9c"; depends=[GenomicRanges]; };
@@ -53,30 +58,32 @@ in with self; {
   Fletcher2013a = derive2 { name="Fletcher2013a"; version="1.17.0"; sha256="05kvsbr46yjpkdnn7rwxhj3wnlrgz92fgg35b8i781131vpy4lzh"; depends=[Biobase gplots limma VennDiagram]; };
   Fletcher2013b = derive2 { name="Fletcher2013b"; version="1.17.0"; sha256="1rfsb49fcn127nzykwndzp7gapd36j3r01dvvhn87w6ryy9yc98c"; depends=[Fletcher2013a igraph RColorBrewer RedeR RTN]; };
   FlowSorted_Blood_450k = derive2 { name="FlowSorted.Blood.450k"; version="1.19.0"; sha256="0ngh5zwikm83rzv9aykhxijf7nj345nnak2207jn4frdq8qahh3l"; depends=[minfi]; };
-  FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="0.99.36"; sha256="1yyrcg1zzq9mv6zx9an4bpszh7r9vacwrbcpdza5ihi8w4pcfw9y"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi nlme quadprog S4Vectors SummarizedExperiment]; };
+  FlowSorted_Blood_EPIC = derive2 { name="FlowSorted.Blood.EPIC"; version="0.99.37"; sha256="1kfh6x69r3vc7v3in1q1n8frbsha5z8gmds7dcgy39wvry16c6lm"; depends=[ExperimentHub genefilter IlluminaHumanMethylationEPICanno_ilm10b4_hg19 minfi nlme quadprog S4Vectors SummarizedExperiment]; };
   FlowSorted_CordBlood_450k = derive2 { name="FlowSorted.CordBlood.450k"; version="1.9.0"; sha256="1ib9g4zy3zwk7m6hl9ggi030qwrjch9jnip6d7a4b27cjzlf0sdq"; depends=[minfi]; };
   FlowSorted_CordBloodNorway_450k = derive2 { name="FlowSorted.CordBloodNorway.450k"; version="1.7.0"; sha256="04i701nl8w8sdc85z1y8gzg076n3znnd9fkp35a7pq7sczkfih90"; depends=[minfi]; };
   FlowSorted_DLPFC_450k = derive2 { name="FlowSorted.DLPFC.450k"; version="1.17.0"; sha256="1d9xq8ha0p1injk8l16vggfkzk7xlsgaqb227gvl6xc49q8dmh5m"; depends=[minfi]; };
   FunciSNP_data = derive2 { name="FunciSNP.data"; version="1.17.0"; sha256="1vp55zd2ifamxm248jskvf2y29cgjyx98jw41h2pbly31qxq4h49"; depends=[IRanges rtracklayer]; };
   GGdata = derive2 { name="GGdata"; version="1.19.0"; sha256="0mr6l11bgg8ncga9ivwdps6jp6zbcjs5jxvcpf834qaj92h63mrg"; depends=[AnnotationDbi Biobase GGBase illuminaHumanv1_db snpStats]; };
-  GSBenchMark = derive2 { name="GSBenchMark"; version="0.115.0"; sha256="1kpkn05a0r6wf1cv1q9gprgzgjaj8b2ig3apkaydjilcjykbr3vg"; depends=[]; };
+  GIGSEAdata = derive2 { name="GIGSEAdata"; version="0.99.11"; sha256="1rn6dmji5ja1p83gai18bcmdc9vi0fm4pq4yk7wdsbv6p334cqlq"; depends=[]; };
+  GSBenchMark = derive2 { name="GSBenchMark"; version="1.1.0"; sha256="1a9hlgcz9m36gzkmxkq4i308hsm617hmsxmwq09yd5cxq8dl80g4"; depends=[]; };
   GSE62944 = derive2 { name="GSE62944"; version="1.9.0"; sha256="1s28rkr5nm91vnl6cx0gifib4nw70gs8bhmv003f9kbpiq420i8k"; depends=[Biobase GEOquery]; };
   GSVAdata = derive2 { name="GSVAdata"; version="1.17.0"; sha256="1gjc9psmx0i25bwki6l74d8jg3mrvfzjdnxs5bhbqnzab6fzdfh0"; depends=[Biobase GSEABase hgu95a_db]; };
   GWASdata = derive2 { name="GWASdata"; version="1.19.0"; sha256="0i09njrq0fzwvzj6lqsa7kdnwi35lm7z0akywh0mr87i6dlqj8sq"; depends=[GWASTools]; };
   GeuvadisTranscriptExpr = derive2 { name="GeuvadisTranscriptExpr"; version="1.9.0"; sha256="1h6ghr75h1i87lbarsganiw6mgjyiha4zv4hbjdjljc464s11b0d"; depends=[]; };
-  HDCytoData = derive2 { name="HDCytoData"; version="1.1.0"; sha256="1nlalaccb5y6vsl5k63qz2mcjr6k6syciv95l18962acgnlqbpq1"; depends=[ExperimentHub flowCore SummarizedExperiment]; };
+  HD2013SGI = derive2 { name="HD2013SGI"; version="1.21.1"; sha256="1m3q08m21vim5j520wgiwszrp6nnkrsfqf6wac8cyzw1qs3cp1s6"; depends=[EBImage geneplotter gplots limma LSD RColorBrewer splots vcd]; };
+  HDCytoData = derive2 { name="HDCytoData"; version="1.1.2"; sha256="1ay7r0aya0b6rxwscg3lwzlgl9iaj9ykii52lmzpxx40yc6szpnv"; depends=[ExperimentHub flowCore SummarizedExperiment]; };
   HEEBOdata = derive2 { name="HEEBOdata"; version="1.19.0"; sha256="1z8qb5xrzadg6fxg8cx04dpad3qiab5m8vhgdqw4xs8xdaqd4g1m"; depends=[]; };
   HIVcDNAvantWout03 = derive2 { name="HIVcDNAvantWout03"; version="1.21.0"; sha256="0pgb0r6zp6v0wq16c5zjxzjjwb6cjjp3cn8jnh4p91rwf43za4rh"; depends=[]; };
-  HMP16SData = derive2 { name="HMP16SData"; version="1.1.0"; sha256="1a5plpx6fcdn924gpfqnw6ykqrc9m62rdkzwwgwfmzj1pl4585qn"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors SummarizedExperiment tibble]; };
-  HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="0.115.0"; sha256="0v5ks29280bybzhi5sfsrbrdajh8a29jkrr2c44ld2qchs9qhgmm"; depends=[]; };
+  HMP16SData = derive2 { name="HMP16SData"; version="1.1.4"; sha256="0qjqf7ipczv3rs4r4l5ynagi46ksb98b8mylgvbclrqp7ny2wcbq"; depends=[AnnotationHub assertthat dplyr ExperimentHub kableExtra knitr magrittr readr S4Vectors SummarizedExperiment tibble]; };
+  HSMMSingleCell = derive2 { name="HSMMSingleCell"; version="1.1.0"; sha256="0fl3r3sdnnn3s9h5sn0bmgpi0hj965cwgca51qkwcvll4rjamyq2"; depends=[]; };
   HarmanData = derive2 { name="HarmanData"; version="1.9.0"; sha256="1c6avjny0fasj99q0a2dm8p3h68jalcglx51b90fnyjgvqgx3h2g"; depends=[]; };
   HarmonizedTCGAData = derive2 { name="HarmonizedTCGAData"; version="1.3.0"; sha256="07fvdf6kzipa42r5dmmld7p2chbi074d248da0xmlm8lm1i0wkc9"; depends=[ExperimentHub]; };
   HelloRangesData = derive2 { name="HelloRangesData"; version="1.7.0"; sha256="05yr2mklxwfij6yzmhpk83mlrq7zfcn8finf2m4lrvdbdzl1bkki"; depends=[]; };
-  HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="0.115.0"; sha256="1498q13fd190cnn6rh1m796zpalfwxfw275r33k8dnjfqiw5c4mc"; depends=[]; };
+  HiCDataHumanIMR90 = derive2 { name="HiCDataHumanIMR90"; version="1.1.0"; sha256="0nmd7iqa6cg74xvz1a2x9ahyzs3kwd4fnhz5nkh62sgndj1pv62l"; depends=[]; };
   HiCDataLymphoblast = derive2 { name="HiCDataLymphoblast"; version="1.17.0"; sha256="0hjhlq7vx71lwv37vidwlb819hm617dx7g39hgf20ggccmp310rh"; depends=[]; };
   Hiiragi2013 = derive2 { name="Hiiragi2013"; version="1.17.0"; sha256="17mnwnpsam62mc8bqdwjfh9fiayasbkx1gd3bbp0k82w3az9yzbf"; depends=[affy Biobase boot clue cluster genefilter geneplotter gplots gtools KEGGREST lattice latticeExtra MASS mouse4302_db RColorBrewer xtable]; };
   HumanAffyData = derive2 { name="HumanAffyData"; version="1.7.0"; sha256="02hp2a7h0ivzdfql3vsrvxrn4answlr7hrhw5azdjw8jh895dd1j"; depends=[Biobase ExperimentHub]; };
-  IHWpaper = derive2 { name="IHWpaper"; version="1.9.2"; sha256="1ah85aim6mfjiv08pxr11d9x84ymki2kvnncx1iidkqd81h97ifk"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; };
+  IHWpaper = derive2 { name="IHWpaper"; version="1.9.6"; sha256="19fg4ca9hhlh4as0nyd3qkkgqphghgvlcs57279pl42nphzz1hw0"; depends=[Biobase BiocGenerics BiocParallel cowplot DESeq2 dplyr fdrtool genefilter ggplot2 IHW qvalue Rcpp SummarizedExperiment]; };
   ITALICSData = derive2 { name="ITALICSData"; version="2.19.0"; sha256="0i09g3dj3rz0yr4n35g9fhc5df957i928vbinsx2bl3jsj7xrf6f"; depends=[]; };
   Illumina450ProbeVariants_db = derive2 { name="Illumina450ProbeVariants.db"; version="1.17.0"; sha256="1y219yqipskv3mzf7g75rmzwsp5sq2r9cqacbpyc2gk28z6dfnix"; depends=[]; };
   IlluminaDataTestFiles = derive2 { name="IlluminaDataTestFiles"; version="1.19.0"; sha256="0b6zhvkhpjhz9wr3cfcvyy16l1kvd6aq9p58y78ql9rgpbhz7dcz"; depends=[]; };
@@ -84,7 +91,7 @@ in with self; {
   JASPAR2014 = derive2 { name="JASPAR2014"; version="1.17.0"; sha256="13hrxj4q2r9bdzwnl0qm5ap92051483876rwq73bz6hy5xg73abx"; depends=[Biostrings]; };
   JASPAR2016 = derive2 { name="JASPAR2016"; version="1.9.0"; sha256="1gx14sjv9v5705h1763p5js37jrvvlkiqdm7nrawjs4n6y4cpsdf"; depends=[]; };
   JctSeqData = derive2 { name="JctSeqData"; version="1.11.0"; sha256="1zrnmvs1mmg07s5fi8m5yqb975kb1nkx98j0shpk9xi5jdbf7x0d"; depends=[]; };
-  KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="0.115.0"; sha256="1y7nnqxaqv9khgy58wq4mflgl0nmk589bcc76chjx7cijq88v09r"; depends=[Biobase BiocGenerics]; };
+  KEGGandMetacoreDzPathwaysGEO = derive2 { name="KEGGandMetacoreDzPathwaysGEO"; version="1.1.0"; sha256="1d4qg0svrmfc6v7dhgxbsn0xfhyplizfh113n26z64y97nfhc21p"; depends=[Biobase BiocGenerics]; };
   KEGGdzPathwaysGEO = derive2 { name="KEGGdzPathwaysGEO"; version="1.19.0"; sha256="0w2a3yjp5xhbxq0vhzyka8sx17a095ddnpm4jhac65s6zmndgqr3"; depends=[Biobase BiocGenerics]; };
   KOdata = derive2 { name="KOdata"; version="1.7.0"; sha256="0grvn2pc38zv133v60hvjh1jx9dsbrwxrz9c6fb977z1rznrkzz8"; depends=[]; };
   LiebermanAidenHiC2009 = derive2 { name="LiebermanAidenHiC2009"; version="0.19.0"; sha256="1i6rl8mziv8apxxa2hlmsg6ramq4aasbg9nxj963lsk9b6gnrzlf"; depends=[IRanges KernSmooth]; };
@@ -101,15 +108,16 @@ in with self; {
   MMDiffBamSubset = derive2 { name="MMDiffBamSubset"; version="1.17.0"; sha256="1bjkdyf0knkdbzdmlas81dhnm5k7yslq6km3yzffrvn1kssml47i"; depends=[]; };
   MSBdata = derive2 { name="MSBdata"; version="0.99.1"; sha256="1bgzzrynb4066xps7wagawb2pjd64qab7n9il2znsidfprm03bxj"; depends=[]; };
   MSstatsBioData = derive2 { name="MSstatsBioData"; version="1.3.0"; sha256="10i3gg9fbhcj6fz4fz1jzmqmabdf9c39ys8yp40qs60glv9gj3qa"; depends=[]; };
-  MUGAExampleData = derive2 { name="MUGAExampleData"; version="0.115.0"; sha256="1ls2rhjx9ksdlz28dw3rm59rh6k17xyilda92ib48p7898njgf1c"; depends=[]; };
-  MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.1.0"; sha256="03k4ddgjvrpgg9xikjhy1ayampr8v18ncm57jpnn9wrijvyinpfj"; depends=[AnnotationHub Biobase ExperimentHub impute lattice]; };
-  MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.1.0"; sha256="0d7kpm9cqxkwnnickk0hcc2y0x4ah3mh8ajpdrhrylvffbmx4r38"; depends=[AnnotationHub Biobase ExperimentHub impute lattice]; };
-  MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.1.0"; sha256="0mpspppz8bmq90aq9jvvqs5700n0dkiqcd5pdrsija8ycp2gbxc9"; depends=[AnnotationHub Biobase ExperimentHub impute lattice]; };
+  MUGAExampleData = derive2 { name="MUGAExampleData"; version="1.1.0"; sha256="18y2ljddzk0g7cn5v8cpc151mrdfzhvj0ah4c988lmc6xlqcyjsv"; depends=[]; };
+  MetaGxBreast = derive2 { name="MetaGxBreast"; version="1.1.1"; sha256="1lzqv8alxccmfp6s4ylyam9ljwga9p9q5ndnhsljnfiyw820md78"; depends=[AnnotationHub Biobase ExperimentHub impute lattice]; };
+  MetaGxOvarian = derive2 { name="MetaGxOvarian"; version="1.1.1"; sha256="1djqlmms5a24g8n6mimp4fib3h6qd17p1cl9anzmvl3zscz23p8y"; depends=[AnnotationHub Biobase ExperimentHub impute lattice]; };
+  MetaGxPancreas = derive2 { name="MetaGxPancreas"; version="1.1.1"; sha256="17vjfnlxrkmdxifmbpfq81zqzzpdhkm5s1aagcnrhgzkv9prszms"; depends=[AnnotationHub Biobase ExperimentHub impute lattice]; };
   MethylAidData = derive2 { name="MethylAidData"; version="1.13.0"; sha256="157qvzvw8hhw25qnzv7xax3vzmq38bw4fp0k34jfwgq944srv0h5"; depends=[MethylAid]; };
-  Mulder2012 = derive2 { name="Mulder2012"; version="0.21.0"; sha256="10mciqb0vh32hx1590r99zyr0pbx84hrssdpjz6i8g9hzlp69wvm"; depends=[HTSanalyzeR igraph KEGG_db MASS org_Hs_eg_db PANR pvclust RedeR]; };
+  Mulder2012 = derive2 { name="Mulder2012"; version="0.21.1"; sha256="1ypxdys24g8k98jd50sldqggy28fmjy1cq7gc3pxa10rww6g9h57"; depends=[HTSanalyzeR igraph KEGG_db MASS org_Hs_eg_db PANR pvclust RedeR]; };
   NCIgraphData = derive2 { name="NCIgraphData"; version="1.17.0"; sha256="090s04iwbnhdbgprcy15hl596vmgq8x97v34w2xvmsdld5b8z58d"; depends=[]; };
-  NGScopyData = derive2 { name="NGScopyData"; version="0.115.0"; sha256="1l949sqfywpa5rqxh8h6wq5i8cqmf9ly1ghcrb0gmxv2rcazbn87"; depends=[]; };
+  NGScopyData = derive2 { name="NGScopyData"; version="1.1.0"; sha256="13dlsznbg3kk7pi0gdzwnh9i3qdk538qh4rnjbpxr6iw61hwl0zd"; depends=[]; };
   Neve2006 = derive2 { name="Neve2006"; version="0.19.0"; sha256="0fn77ic133wfdjrnh5vdk95rwx51nigfmznb7i94n8h5hddmpnbc"; depends=[annotate Biobase hgu133a_db]; };
+  OMICsPCAdata = derive2 { name="OMICsPCAdata"; version="0.99.11"; sha256="1w38ii5wsaiar4lbn5428pyinzg07zvw4c7fac6a3nx70mhpnxn5"; depends=[MultiAssayExperiment]; };
   OnassisJavaLibs = derive2 { name="OnassisJavaLibs"; version="1.3.0"; sha256="0ih472qrzx183pyk0k8agwybn5bycx3hx1j2amjkp42p7hml4iqj"; depends=[rJava]; };
   PCHiCdata = derive2 { name="PCHiCdata"; version="1.9.0"; sha256="19cmbyhsi84pi89fy623f7r5yld7qifnqfpvwcb3n7ads5idq1qm"; depends=[Chicago]; };
   PGPC = derive2 { name="PGPC"; version="1.9.0"; sha256="10z8r98lp92dh14wpf2hs5n3jzw9y3dw6mf5ssx469368hhaypma"; depends=[ChemmineR EBImage geneplotter ggplot2 gplots imageHTS limma plyr RColorBrewer reshape2 SearchTrees splots]; };
@@ -120,7 +128,7 @@ in with self; {
   PasillaTranscriptExpr = derive2 { name="PasillaTranscriptExpr"; version="1.9.0"; sha256="1lkqz0kp1jfsi1bvkqhvlqapp658qfm7b1p9kiwk9qakfl0nm7x6"; depends=[]; };
   PathNetData = derive2 { name="PathNetData"; version="1.17.0"; sha256="02wdp23y583p9sinhaqkv6lxp836m6kh7na8b2wv6qajanibzhl1"; depends=[]; };
   ProData = derive2 { name="ProData"; version="1.19.0"; sha256="0idv9icfzr52k96gij5mlyqyd48mjwka7jg1nhawiaj7g4c005yc"; depends=[Biobase]; };
-  PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.7.0"; sha256="1dql2jfvsqn2r1cq1bfg7nfs7gimim6jgsvz7b9pqk1zdh02jhkm"; depends=[CAMERA LOBSTAHS xcms]; };
+  PtH2O2lipids = derive2 { name="PtH2O2lipids"; version="1.7.1"; sha256="1ypwwrk643shfng4nqs7jpy25058ni2fqq4jhx2yc1j73bx8k834"; depends=[CAMERA LOBSTAHS xcms]; };
   QDNAseq_hg19 = derive2 { name="QDNAseq.hg19"; version="1.11.0"; sha256="134mzg2r3bpzcpag5vf2fq8g0xczb5qxyvqqcjzqw654mbafgczr"; depends=[QDNAseq]; };
   QDNAseq_mm10 = derive2 { name="QDNAseq.mm10"; version="1.11.0"; sha256="1j5qzwbc7a9h9hlda6c6f53pm6vqm4kdja4z144j4snyac88xclm"; depends=[QDNAseq]; };
   QUBICdata = derive2 { name="QUBICdata"; version="1.9.0"; sha256="1r1wcmd7s17gm5q682siy8ld65w6ylch9jamqjlbp8qiqqvfmzdd"; depends=[]; };
@@ -128,28 +136,30 @@ in with self; {
   RIPSeekerData = derive2 { name="RIPSeekerData"; version="1.17.0"; sha256="11hrk3cf86jgc7vf14wlyarar2vsnjs0i9wyzvmk76draq9frg30"; depends=[RIPSeeker]; };
   RITANdata = derive2 { name="RITANdata"; version="1.5.0"; sha256="0yn8nfvni9h4k9ngzccsqgbjrjvql5gp3haqyg9x334sjsi212c8"; depends=[]; };
   RMassBankData = derive2 { name="RMassBankData"; version="1.19.0"; sha256="172x6x7fnzjczi76ibmscbb51l8185lqgiypyyvlisp145mxssdn"; depends=[]; };
-  RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.19.0"; sha256="01sf7pbcsibdm5dhh9zv2gg2g58z6vswhdz227qfd6cvbpnpqr7b"; depends=[fields gdata genefilter MASS RNAinteract sparseLDA]; };
+  RNASeqRData = derive2 { name="RNASeqRData"; version="0.99.8"; sha256="0mfgfmbngx87h9ymbqcdabla5rb26p1kh4rvp3g307rp3hraivcp"; depends=[]; };
+  RNAinteractMAPK = derive2 { name="RNAinteractMAPK"; version="1.19.1"; sha256="1c90s1vjp4w065zldlzrn64qakwnhfg3s6w3ddmx6hynbrc8lk8j"; depends=[fields gdata genefilter MASS RNAinteract sparseLDA]; };
   RNAseqData_HNRNPC_bam_chr14 = derive2 { name="RNAseqData.HNRNPC.bam.chr14"; version="0.19.0"; sha256="0z1b986jvinzh3c1yl9q8wa66wgq8hp8rjbs23glxna77znvkp87"; depends=[]; };
-  RRBSdata = derive2 { name="RRBSdata"; version="0.115.0"; sha256="0i33fm60lcjczzc4xx6y1gg5jsxlq0v9bz46hym7aq59zlpbqh6p"; depends=[BiSeq]; };
-  RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.9.0"; sha256="0an39dgcapfn7i5h1inbjihl224l945g0rax5h33bmpnzlry1a8a"; depends=[RTCGA]; };
-  RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.9.0"; sha256="1lh2ij6x796rn39j1awn461jc0snswp14x6z338gqz58dahjfr1x"; depends=[RTCGA]; };
-  RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.9.0"; sha256="0micdaglaqfbg2pg9b0jpnvfi91adms8lg7sq7k9srgyjx2dsdid"; depends=[RTCGA]; };
+  RRBSdata = derive2 { name="RRBSdata"; version="1.1.0"; sha256="18xm228jlpvv5z5r5k3nyjnnmizsyg5lkml4kdrkw8mv7gljgcyb"; depends=[BiSeq]; };
+  RTCGA_CNV = derive2 { name="RTCGA.CNV"; version="1.9.2"; sha256="19lwjkzs0wrvrgm5a81wq2qcqv2xa1irfnqbv6yrx9c3g3sk6zqi"; depends=[RTCGA]; };
+  RTCGA_PANCAN12 = derive2 { name="RTCGA.PANCAN12"; version="1.9.2"; sha256="1ain3wscy6n1jjcb8wajpn9h7flhppih01mjjv6y3dxyyiqqchim"; depends=[RTCGA]; };
+  RTCGA_RPPA = derive2 { name="RTCGA.RPPA"; version="1.9.2"; sha256="0fisrp4mgl035lcwg4pj1zcrmfafsc0kgc6788h9nx9b1vh6s7w9"; depends=[RTCGA]; };
   RTCGA_clinical = derive2 { name="RTCGA.clinical"; version="20151101.11.0"; sha256="1y63vnj59sv73zcrnwqd4ikdjx45y9sqb2pj1lnsrhvfbmjazi5z"; depends=[RTCGA]; };
-  RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.9.0"; sha256="094yh17af0x4zb97dcmrfxqviylqmr3zii3jya6iwwr2jay5a8wh"; depends=[RTCGA]; };
-  RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.9.0"; sha256="0m3i7srvdjjkynnizh7jq8d70rm7cq0wi6182iafdgyaxip2qxgk"; depends=[RTCGA]; };
-  RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.9.0"; sha256="1nw57daaf3z5k2m52rw72ncxj68bkjmpq158z59v8zm5cpm8z33f"; depends=[RTCGA]; };
+  RTCGA_mRNA = derive2 { name="RTCGA.mRNA"; version="1.9.2"; sha256="1bb9b83y3f9012gnr19c2wacj1fkqvbqnymdv3qyc2pn6qhzid93"; depends=[RTCGA]; };
+  RTCGA_methylation = derive2 { name="RTCGA.methylation"; version="1.9.2"; sha256="1a97cdwm7rn9mipw3v904r4j4ay6p26rv3f8lx2znhz5hg44gnaq"; depends=[RTCGA]; };
+  RTCGA_miRNASeq = derive2 { name="RTCGA.miRNASeq"; version="1.9.2"; sha256="1lkywq2nvpil8wi8nv73hfxs3hsi71d85n9if7ra4c6ib3frwiwb"; depends=[RTCGA]; };
   RTCGA_mutations = derive2 { name="RTCGA.mutations"; version="20151101.11.0"; sha256="1wyiz22rw400hiqqnw41mqpvy8bbj1vxwx3v4vnz6x81drv2sc1n"; depends=[RTCGA]; };
   RTCGA_rnaseq = derive2 { name="RTCGA.rnaseq"; version="20151101.11.0"; sha256="0z2k651pd0m9lxl3n62xf41xhk65n33cgf7d5zfwd03hbc07d0gq"; depends=[RTCGA]; };
-  RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="0.115.0"; sha256="0vyy1sarkb64vjq1c3mrd0d04hnfy4aigi7zgvaniv31ab6hpb05"; depends=[Biobase]; };
+  RUVnormalizeData = derive2 { name="RUVnormalizeData"; version="1.1.0"; sha256="002q9rc6d0cr6gip9irlafi67ds4jlvxfnil2if30aw4h6l4apkn"; depends=[Biobase]; };
   RcisTarget_hg19_motifDBs_cisbpOnly_500bp = derive2 { name="RcisTarget.hg19.motifDBs.cisbpOnly.500bp"; version="1.1.1"; sha256="08p1r5vpz92i7nmgdjsp0i5wzypb46lsdnlykci21nzf9ip12mc9"; depends=[data_table]; };
-  RforProteomics = derive2 { name="RforProteomics"; version="1.19.1"; sha256="1dy4d1wyf8ifdhy8psy533yy8liwgb26gbwqv1rdzjxgzai8f3jr"; depends=[AnnotationDbi Biobase BiocInstaller biocViews DT interactiveDisplay MSnbase R_utils rpx shiny]; };
-  RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.13.0"; sha256="1p3b97f8kmilpwgf61p4kwkizdn8a07ai9a2x3hy4igzw21fcgz5"; depends=[GenomicRanges]; };
+  RegParallel = derive2 { name="RegParallel"; version="0.99.9"; sha256="0n0qyiz2bqw5wi35f8rszrx668dl6hqw054lqakb2dpfpjlzz57y"; depends=[arm data_table doParallel foreach iterators MASS stringr survival]; };
+  RforProteomics = derive2 { name="RforProteomics"; version="1.19.4"; sha256="1mm1cfsazajkhaim4grz2zi7ar4x2ljn5vq4rlv20gra3d4b82ca"; depends=[BiocManager biocViews MSnbase R_utils shiny]; };
+  RnBeads_hg19 = derive2 { name="RnBeads.hg19"; version="1.13.1"; sha256="1l3za4hbrg38p9sh38qsj17hgg03cbgqga4zg0c4lcipifrpbbfj"; depends=[GenomicRanges]; };
   RnBeads_hg38 = derive2 { name="RnBeads.hg38"; version="1.13.0"; sha256="1wyy4m3p40i12hlwvz9ixqps8i4d5703gl0pcgl4i2485d78yv9v"; depends=[GenomicRanges]; };
   RnBeads_mm10 = derive2 { name="RnBeads.mm10"; version="1.13.0"; sha256="1kjvy1v0dbdm959cmsf2d5mnrbnisjpff12wl5gn44n2cg7bb65g"; depends=[GenomicRanges]; };
   RnBeads_mm9 = derive2 { name="RnBeads.mm9"; version="1.13.0"; sha256="1s1iy8x1x53ny1pyfgwwkiwc3jpjhdkcd9vpwyv2ix5g22jf8ag7"; depends=[GenomicRanges]; };
   RnBeads_rn5 = derive2 { name="RnBeads.rn5"; version="1.13.0"; sha256="1pp9y94rdk5wwapc4jbvs35x1z2agv4xvzxy3fl3h7hp22gaqr9p"; depends=[GenomicRanges]; };
   RnaSeqSampleSizeData = derive2 { name="RnaSeqSampleSizeData"; version="1.13.1"; sha256="1cqannbgpr0s9qr1cx4d23rwjy6k63x25khdr7qx5939chz0r21a"; depends=[edgeR]; };
-  SCLCBam = derive2 { name="SCLCBam"; version="1.13.0"; sha256="1ynibzjlyfscg5b1lxa5nvfznp106vb4h7ia6n847h3n5s6ndasv"; depends=[]; };
+  SCLCBam = derive2 { name="SCLCBam"; version="1.13.1"; sha256="1b6da5i20w7w08jv3s2xdpp71qf7y1nxyv3qj3fz5jkw2aavds5f"; depends=[]; };
   SNAData = derive2 { name="SNAData"; version="1.27.0"; sha256="182pramjd14g1p0aawcjrv51xlyqkp9mhm84v3gnd9gnmkb69b31"; depends=[graph]; };
   SNAGEEdata = derive2 { name="SNAGEEdata"; version="1.17.0"; sha256="15l23gw5ckxgr6pscl07jqwb1lz58g5893wnlzz4zpk3sd46d2p6"; depends=[]; };
   SNPhoodData = derive2 { name="SNPhoodData"; version="1.11.0"; sha256="1zm0zhf2987hls15b47jv6krn1cc8kp6jm64k4wqhp4dsjxwbaqd"; depends=[]; };
@@ -162,21 +172,23 @@ in with self; {
   TBX20BamSubset = derive2 { name="TBX20BamSubset"; version="1.17.0"; sha256="15521vpi6h1ydl8vw43h0plrgy7baj5bprzg8rs50yxgkphh9nns"; depends=[Rsamtools xtable]; };
   TCGAMethylation450k = derive2 { name="TCGAMethylation450k"; version="1.17.0"; sha256="090y4vyipnlxxg78yxva7q5y81gawfpmkgjrsqiqr1smfalvx9yw"; depends=[]; };
   TCGAWorkflowData = derive2 { name="TCGAWorkflowData"; version="1.5.0"; sha256="0kbab7fjy7waq5r6k2w0c8x811xd62v39p17acd5gk8gbw9gy919"; depends=[SummarizedExperiment]; };
-  TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.1.0"; sha256="0l65f933xxngfm6z5576disj60xasm386x8balsrymcvjkpksr7q"; depends=[]; };
-  TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="0.115.0"; sha256="1bmn0r5bx2vc4cpv48mbhr57gpidr42mgaxliwmkyj0dqbjnzmqd"; depends=[Biobase]; };
-  TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="0.115.0"; sha256="1n7qq2gc3mcfh4c1y2myrb1pj6bq8l7m7nwhlk0ps90zlj064isp"; depends=[Biobase]; };
-  TENxBrainData = derive2 { name="TENxBrainData"; version="1.1.0"; sha256="032z307qh7idxkzqc8b5gngysmw8iy1s3z1r8747n495dy85ippz"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
+  TCGAbiolinksGUI_data = derive2 { name="TCGAbiolinksGUI.data"; version="1.1.1"; sha256="0lg2xmf9crcd3328sikjynicrapm32ffq8ay9p0r484rx0m5yvbp"; depends=[]; };
+  TCGAcrcmRNA = derive2 { name="TCGAcrcmRNA"; version="1.1.0"; sha256="160gj5q4n08l3llfqd0iim2054v8jd3a2pvvd7454amangnrrjd1"; depends=[Biobase]; };
+  TCGAcrcmiRNA = derive2 { name="TCGAcrcmiRNA"; version="1.1.0"; sha256="1njy5ab0a8p97gi8ci0bad1byl5k42a5shjrss8z9k3a0n9jzpxm"; depends=[Biobase]; };
+  TENxBrainData = derive2 { name="TENxBrainData"; version="1.1.2"; sha256="1m4cajmp1h5mahlxbvyfvslqq3yfbcy8k46m5p0b73phvnw44846"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
+  TENxPBMCData = derive2 { name="TENxPBMCData"; version="0.99.3"; sha256="00xjm8xr5f1dzghmr6p3mcjcir6a81gd99kgzznj5k90assggr45"; depends=[AnnotationHub ExperimentHub HDF5Array SingleCellExperiment]; };
+  TabulaMurisData = derive2 { name="TabulaMurisData"; version="0.99.2"; sha256="185y3cxdkgj4gl4ai0nc0684nz357qscfsah559wdvvvqny25dmk"; depends=[ExperimentHub]; };
   TargetScoreData = derive2 { name="TargetScoreData"; version="1.17.0"; sha256="12bmw3qmkw9blmr5ikgx0qyfv1x6hda8d41fiy8gsb74fa4nifsv"; depends=[]; };
-  TargetSearchData = derive2 { name="TargetSearchData"; version="1.19.0"; sha256="024av13qimrl55dwkw46rfx9gr6kdghnf1n5qcr4q7h5i9frdfxg"; depends=[]; };
+  TargetSearchData = derive2 { name="TargetSearchData"; version="1.19.1"; sha256="1hwfqsz1rivqq14x5z9d8nphxajfxhm70mgbi0pjzlzsravg487w"; depends=[]; };
   TimerQuant = derive2 { name="TimerQuant"; version="1.11.0"; sha256="1a49jaxgjhwl756a7wijswa90z03fz61ffp6w5h00v9qfzgnyf79"; depends=[deSolve dplyr ggplot2 gridExtra locfit shiny]; };
   VariantToolsData = derive2 { name="VariantToolsData"; version="1.5.0"; sha256="1kkz3zvba4mc237pxwj6z0c2jvbrgfaz3n5vm55bz6j47aas3i4j"; depends=[BiocGenerics GenomicRanges VariantAnnotation]; };
   WES_1KG_WUGSC = derive2 { name="WES.1KG.WUGSC"; version="1.13.0"; sha256="0f3llqwkc5d4av47871d45lfqghmncww9g5rgf58pydrnw7n93xv"; depends=[]; };
   XhybCasneuf = derive2 { name="XhybCasneuf"; version="1.19.0"; sha256="1kac43fvng1pwa8hlbivd8pxan7agp9csp0nmh062x4kwamny3hm"; depends=[affy ath1121501cdf RColorBrewer tinesath1cdf]; };
   affycompData = derive2 { name="affycompData"; version="1.19.0"; sha256="14ss2b854dj36rzhx1z854r5hkxy0yqzlm5k0690gn5bwlah6rk6"; depends=[affycomp Biobase]; };
   affydata = derive2 { name="affydata"; version="1.29.0"; sha256="0sv5q59xfvlyk97ihki5sqdzy9nldjccxiscx3ii1xpp4xk44i3c"; depends=[affy]; };
-  airway = derive2 { name="airway"; version="0.115.0"; sha256="1h823q96za4jrzf680bp651blh5giqwx660nhp7xhl3drxpzf1ir"; depends=[SummarizedExperiment]; };
-  allenpvc = derive2 { name="allenpvc"; version="0.99.1"; sha256="1g0bk3v2gmhr2ck4kdc2pb6xj8abk9kgk0h5f0hdfbaxjdrhwpx3"; depends=[AnnotationHub ExperimentHub SingleCellExperiment]; };
-  alpineData = derive2 { name="alpineData"; version="1.7.0"; sha256="18llr6pssxmrvw3qzxw4f77bpv8g3akz3kbsn9xsdsij364q33am"; depends=[AnnotationHub ExperimentHub]; };
+  airway = derive2 { name="airway"; version="1.1.0"; sha256="0daywdjalqbqx6gxrg4fwiasa62h9jh8ibg9kh0vrd35mdazh7b4"; depends=[SummarizedExperiment]; };
+  allenpvc = derive2 { name="allenpvc"; version="0.99.2"; sha256="04f6y2zk7c8prk22yl15qp9xf81dickn2ida8b5jdhzby6a4p1d1"; depends=[AnnotationHub ExperimentHub SingleCellExperiment]; };
+  alpineData = derive2 { name="alpineData"; version="1.7.1"; sha256="1gdj474nc2s92i2m1f02ganr5vsv93315mk3dqdyyk05xr9banbw"; depends=[AnnotationHub ExperimentHub GenomicAlignments]; };
   antiProfilesData = derive2 { name="antiProfilesData"; version="1.17.0"; sha256="0wyjfc02wm5x5d61fs6cs7g3s0j4aibpqkdiwx0d8cbbkl38ih3f"; depends=[Biobase]; };
   aracne_networks = derive2 { name="aracne.networks"; version="1.7.0"; sha256="1acngnqvg7vl402yfcw65rqs27a7sncl1xfz2893abfli2ccpbzx"; depends=[viper]; };
   bcellViper = derive2 { name="bcellViper"; version="1.17.0"; sha256="0rzzj4pla57z9825jcs2kx177xrcqfnh7jai41m8dwfxln6ccz25"; depends=[Biobase]; };
@@ -184,7 +196,9 @@ in with self; {
   beta7 = derive2 { name="beta7"; version="1.19.0"; sha256="1gd1l8rh73k27sm1cjfy9rmsplrkji3zhzrzcldjmaaixl5nfjql"; depends=[marray]; };
   biotmleData = derive2 { name="biotmleData"; version="1.5.0"; sha256="0ccx398761qdnnsrjwrrg6qjrq01fv88999f2llyq9gpd3f43lgs"; depends=[]; };
   bladderbatch = derive2 { name="bladderbatch"; version="1.19.0"; sha256="0n9vwbj8cii67rhxvb1ps72k99rv251zcdr4w3r1jkbvcd61nvh0"; depends=[Biobase]; };
-  blimaTestingData = derive2 { name="blimaTestingData"; version="0.115.0"; sha256="1hzmwjmyi6qnkqnq2x6ml8yvzn1sr33lwc6nhz2k2mx6s2l4ajbb"; depends=[]; };
+  blimaTestingData = derive2 { name="blimaTestingData"; version="1.1.0"; sha256="0r51zz7kh16zgadr2vzgrm5fywfs03mk2jk5qywb27agqbw5y40s"; depends=[]; };
+  brainImageRdata = derive2 { name="brainImageRdata"; version="0.99.6"; sha256="0wbj8y1qskc23gqdwc815racv7kqplmh1v12y5y094fcgs6cq62p"; depends=[ExperimentHub]; };
+  breakpointRdata = derive2 { name="breakpointRdata"; version="0.99.2"; sha256="13mfnd2ms1fnk6zmyz8l10qw8xhfmb8qjyc2r7hn1qmap6ld578f"; depends=[]; };
   breastCancerMAINZ = derive2 { name="breastCancerMAINZ"; version="1.19.0"; sha256="0pn48n81vx2wq425q5wnga6n32apgajk0bwq78ri983plh7ik2b1"; depends=[]; };
   breastCancerNKI = derive2 { name="breastCancerNKI"; version="1.19.0"; sha256="0b6z16m6kqkd8rfrdvjp6p4fbqs78s25fbiswnw0k8jzvz5yw5x7"; depends=[]; };
   breastCancerTRANSBIG = derive2 { name="breastCancerTRANSBIG"; version="1.19.0"; sha256="0slagz3x2q1qykvjcfnh7k3ggpn2g34j4iqvnv7j3mdcc085hn1d"; depends=[]; };
@@ -196,7 +210,9 @@ in with self; {
   bsseqData = derive2 { name="bsseqData"; version="0.19.1"; sha256="0gqwyx0l0xmd2aa46shq4kr11nfi1imj2pwfjc9026r47af5b84h"; depends=[bsseq]; };
   cMap2data = derive2 { name="cMap2data"; version="1.17.0"; sha256="11973w3gjz0qayxacx41mlbf4ji345js8jgjkn2aba0ahnyzb6vw"; depends=[]; };
   cancerdata = derive2 { name="cancerdata"; version="1.19.0"; sha256="02zi60lh6jsg6hlyyq6wzg9lzxjr8m9418kywlk3x3c6kkgkrh69"; depends=[Biobase]; };
-  ccTutorial = derive2 { name="ccTutorial"; version="1.19.0"; sha256="0xd3zrcia312h947nvah3ksx9kxzhqzc9c2nm5q6ssvx15s6f6d6"; depends=[affy Biobase Ringo topGO]; };
+  ccTutorial = derive2 { name="ccTutorial"; version="1.19.3"; sha256="1bghwfpdm2xzh6w1z2pinv9wxy3f5vx8aabyl5vj9smfmplgcmxx"; depends=[affy Biobase Ringo topGO]; };
+  ccdata = derive2 { name="ccdata"; version="1.7.0"; sha256="1vdsldxl1xnjdi9ai346a1zx9jp6kw33884vwwy86xmj7799j3y1"; depends=[]; };
+  celarefData = derive2 { name="celarefData"; version="0.99.0"; sha256="118rdgkz4vlhk5n5c683sl28xsjqds6m08w3nfsw8z7ki6kng9sx"; depends=[]; };
   ceu1kg = derive2 { name="ceu1kg"; version="0.19.0"; sha256="0vs60mflfc1pnc7s725wsyq2jrj44jrvxwzpw4bhlj0qbs602s8l"; depends=[Biobase GGBase GGtools]; };
   ceu1kgv = derive2 { name="ceu1kgv"; version="0.23.0"; sha256="10jnbc8y386racq3ac1hf1dp76wvzlfm8p66c94pk3f2m0w45psv"; depends=[Biobase GGBase]; };
   ceuhm3 = derive2 { name="ceuhm3"; version="0.19.0"; sha256="1qdp85ps5xrlx1pl769j91aig2rgxcix4pdzrsa249nyyq1avdym"; depends=[Biobase GGBase GGtools]; };
@@ -209,11 +225,11 @@ in with self; {
   curatedBladderData = derive2 { name="curatedBladderData"; version="1.17.0"; sha256="14xwq55g83pvwyxm7kl6hq9c4j2bd6vp63afir619d5binl6i7ln"; depends=[affy]; };
   curatedBreastData = derive2 { name="curatedBreastData"; version="2.9.0"; sha256="024sx3am50vsaaixmj8gfp3f905rf7g7qyn47sdakpv6sx48k1zl"; depends=[Biobase BiocStyle ggplot2 impute XML]; };
   curatedCRCData = derive2 { name="curatedCRCData"; version="2.13.0"; sha256="1f6m6sllbxzca27lwyvav2d4si65w7fs9mh4mksw2sn8n8x5452v"; depends=[BiocGenerics nlme]; };
-  curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="1.11.1"; sha256="1gdnp5m8d3lz88hvsm3j2jq9w1di14ifls5l9q51jxm045yg0yjj"; depends=[AnnotationHub Biobase dplyr ExperimentHub magrittr S4Vectors tidyr]; };
+  curatedMetagenomicData = derive2 { name="curatedMetagenomicData"; version="1.11.5"; sha256="1rcznh6h7vrwicf545jfxabrjwqf1npxqpp6hdfnf5bylkfrc1d9"; depends=[AnnotationHub Biobase dplyr ExperimentHub magrittr S4Vectors tidyr]; };
   curatedOvarianData = derive2 { name="curatedOvarianData"; version="1.19.0"; sha256="0yvc1kpy4ql2sd467dggi6kpwxrvvqyasr0mgc61s1snmakvm06y"; depends=[affy BiocGenerics]; };
-  curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.3.3"; sha256="0khdg080c5ivirh84w1w6pvl9g4yi8i8f4sl82q3a2nwldqswghz"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment S4Vectors]; };
+  curatedTCGAData = derive2 { name="curatedTCGAData"; version="1.3.5"; sha256="01m4kld5cp0ff5wlwk2wln15vyjxgahzbk3xkzlg81yvs67ai2vr"; depends=[AnnotationHub ExperimentHub MultiAssayExperiment S4Vectors]; };
   davidTiling = derive2 { name="davidTiling"; version="1.21.0"; sha256="18ivz1z0il8s9sk6c5mzgipsbs8xswbq7swwm422ji1yp75lkd9p"; depends=[Biobase GO_db tilingArray]; };
-  derfinderData = derive2 { name="derfinderData"; version="0.115.0"; sha256="1xvvcbsbmrkri2nl7g1wpbbsa7wn49dj85xwxbsf8yffmisxb09k"; depends=[]; };
+  derfinderData = derive2 { name="derfinderData"; version="1.99.0"; sha256="1dv6j91c9xs19pynza54gs127qqf5xk66rwin6rby0dcv58ng6s4"; depends=[]; };
   diffloopdata = derive2 { name="diffloopdata"; version="1.9.0"; sha256="12a5338djyhg94q7wdahij4c9dnrx5qx04a1g9304wpk5z6cmxni"; depends=[]; };
   diggitdata = derive2 { name="diggitdata"; version="1.13.0"; sha256="09b1mk68mg3jqf63c54xdh805vd79hbnnh02rf6qb3pq6w9b6z64"; depends=[Biobase viper]; };
   dressCheck = derive2 { name="dressCheck"; version="0.19.0"; sha256="0k3h5i86345xx0d31qim1d1aw25axwy48hiq717fbnz2mpwsggj7"; depends=[Biobase]; };
@@ -224,11 +240,11 @@ in with self; {
   etec16s = derive2 { name="etec16s"; version="1.9.0"; sha256="0ljn90gf4sm7615xw25dil15kgf81gl0hvbp24snx4nbflnhns4q"; depends=[Biobase metagenomeSeq]; };
   faahKO = derive2 { name="faahKO"; version="1.21.0"; sha256="19dxcf3yfgy8h8xn76h7x2ihvgy90923a28j3b2k972r84zzy7gk"; depends=[xcms]; };
   fabiaData = derive2 { name="fabiaData"; version="1.19.0"; sha256="104c70pp9cnkx3y2mm6yxj4vj6k2mqrhw1n2cibhxnnqnl2lnwnr"; depends=[Biobase]; };
-  facopy_annot = derive2 { name="facopy.annot"; version="0.115.0"; sha256="0aribb9b0rjd2xlxchbsjq3darg6klhsc8ajpa34m0rldkp3nzrl"; depends=[]; };
+  facopy_annot = derive2 { name="facopy.annot"; version="1.1.0"; sha256="0snc9v8jy3dnxidk7g9lppxcp35flgdgp132sap8qkh6d1qc2rwd"; depends=[]; };
   facsDorit = derive2 { name="facsDorit"; version="1.23.0"; sha256="0xxdz1xfb661pnrqji6vxsmmr90h1v1i195k9gb4dll6hwbq0n11"; depends=[prada]; };
   ffpeExampleData = derive2 { name="ffpeExampleData"; version="1.19.0"; sha256="0jjaj492k4akc30yvr4q8y31wdi152iq5s3pl5i10sl9xrbg80hj"; depends=[lumi]; };
   fibroEset = derive2 { name="fibroEset"; version="1.23.0"; sha256="1g22av8zj4nq9prnps7zgrzvva9d5a6h016llg0brpf9qjpg58p3"; depends=[Biobase]; };
-  fission = derive2 { name="fission"; version="0.115.0"; sha256="1wx3ama4pdklyrjb54ww69ig554iv2c7j568zpxdywclg38z6pms"; depends=[SummarizedExperiment]; };
+  fission = derive2 { name="fission"; version="1.1.0"; sha256="04rwbx0dd6fjyg76jw62vimllq40lb432bzmpf051x9gjqfyx0v2"; depends=[SummarizedExperiment]; };
   flowFitExampleData = derive2 { name="flowFitExampleData"; version="1.17.0"; sha256="1ahg5g9ypxbhm7jrsbq1hjk5r5fmgvirawfd2xqfiaw5x9pkmrai"; depends=[flowCore]; };
   flowPloidyData = derive2 { name="flowPloidyData"; version="1.7.0"; sha256="0f3cnq2s215a6wrz2cbp90219smvhr4zsvl02wbd40xb8902zhdc"; depends=[]; };
   flowQBData = derive2 { name="flowQBData"; version="1.7.0"; sha256="1xla98i06j1qi2w88x1v8agvqcljzwxfcxakw0fl6phwl07hz9na"; depends=[]; };
@@ -245,8 +261,8 @@ in with self; {
   geuvStore2 = derive2 { name="geuvStore2"; version="1.11.0"; sha256="1ggac70x9pblbnzm6wg6rpmbgrkf802b2vgnfah1516grx0dwrkd"; depends=[BatchJobs GenomicRanges gQTLBase]; };
   golubEsets = derive2 { name="golubEsets"; version="1.23.0"; sha256="1h45rwz6z4wgibbyafv8946vfs303km7ixcradml4ymbpwibp4ib"; depends=[Biobase]; };
   grndata = derive2 { name="grndata"; version="1.13.0"; sha256="1ybgk5nf9nqrmw4mchpf183zyik6szzsm2cxh619fv27f0i3hjzk"; depends=[]; };
-  gskb = derive2 { name="gskb"; version="1.13.0"; sha256="0gac903pldny2p1fv3rhxr9v24iznnrz17xhdd8z01rsy0yvxdql"; depends=[]; };
-  h5vcData = derive2 { name="h5vcData"; version="1.115.0"; sha256="0viw7na4wqscaj0vijharvdj8mvwm0mxw0b2gm3slb9crkmksra7"; depends=[]; };
+  gskb = derive2 { name="gskb"; version="1.13.1"; sha256="1jpl7vm2r28bf70mv2sy0dkdn6yn27w96ja2a0yynbpd509v8fwg"; depends=[]; };
+  h5vcData = derive2 { name="h5vcData"; version="2.1.0"; sha256="036bvqd8glpk2armbv42wxv28k6rqg301l7i04wp85d94ipgn6yk"; depends=[]; };
   hapmap100khind = derive2 { name="hapmap100khind"; version="1.23.0"; sha256="07r1nsl92awkkw41midkb9iv4c93my7c222li2f4mym8hn4ahn8p"; depends=[]; };
   hapmap100kxba = derive2 { name="hapmap100kxba"; version="1.23.0"; sha256="0dvb3b2ls7g66vsv9qzl29kkjmdd6mwrhqxzj0a1d7qnkg48kgy1"; depends=[]; };
   hapmap500knsp = derive2 { name="hapmap500knsp"; version="1.23.0"; sha256="0jqyvd1khz84l1qw31xk2szb9ycsp76yrs1h81ahg64sslygnfg0"; depends=[]; };
@@ -256,12 +272,12 @@ in with self; {
   harbChIP = derive2 { name="harbChIP"; version="1.19.0"; sha256="1566kxfblk6z4dia4f3gl3v0dsz8lx343nlflbp2wfb6gd314dl6"; depends=[Biobase Biostrings IRanges]; };
   healthyFlowData = derive2 { name="healthyFlowData"; version="1.19.0"; sha256="052kvg8gvfbqc4fpr8np1q9li7f52daq1rndpg7zmc5zn4nqjzrn"; depends=[flowCore]; };
   hgu133abarcodevecs = derive2 { name="hgu133abarcodevecs"; version="1.19.0"; sha256="1c113f0aj51mdvdizi6m2wmm0v7zxsa3pkp3bjq2426v449qr3ls"; depends=[]; };
-  hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.1.0"; sha256="05y00zzwflkkqblf811k5pxdcc9ivmvv9znlvsa232dkk4f1fnvy"; depends=[Biobase]; };
+  hgu133plus2CellScore = derive2 { name="hgu133plus2CellScore"; version="1.1.1"; sha256="1h1n76j6l0nqqf18a5w5c8vmjd579jdh2ix84j70s30nkzbyxhyw"; depends=[Biobase]; };
   hgu133plus2barcodevecs = derive2 { name="hgu133plus2barcodevecs"; version="1.19.0"; sha256="005llh7vpfc01qbq1wnq1nribqgh1kj7mw0rz59dsmr92czm7lbi"; depends=[]; };
   hgu2beta7 = derive2 { name="hgu2beta7"; version="1.21.0"; sha256="1d80nxbf8ffmh7ipvxw2smvhgq4xvjhnhmwpwmkwn30yghrm46wj"; depends=[]; };
   hmyriB36 = derive2 { name="hmyriB36"; version="1.17.0"; sha256="1s1gsysv8wsk9fzd34fjw2rp6jk8nysg1wd6dhay5mqphv92abkh"; depends=[Biobase GGBase]; };
   humanStemCell = derive2 { name="humanStemCell"; version="0.21.0"; sha256="02y71ydwlygn6yickjx3gjsmrhp6dnvqk5319is70gwd214466r1"; depends=[Biobase hgu133plus2_db]; };
-  iontreeData = derive2 { name="iontreeData"; version="1.17.1"; sha256="171gx10sfmpvwlv8ww5ckgc71y10lips3ws6v566amsdysafy82y"; depends=[]; };
+  iontreeData = derive2 { name="iontreeData"; version="1.17.2"; sha256="1y3jawc5rs1fhv90yygkjghp1ir4zw540hi2ncml4lm003d42ghq"; depends=[]; };
   kidpack = derive2 { name="kidpack"; version="1.23.0"; sha256="1ib24nbvqgids10k1glvpswavnv0qd14nvx9bw13bk09vndagkyi"; depends=[Biobase]; };
   leeBamViews = derive2 { name="leeBamViews"; version="1.17.0"; sha256="1mldlpdpnivfi60rnsbz7466jf9ssyfgb2xv9ipwc8nlmszd6g45"; depends=[Biobase BSgenome GenomicAlignments GenomicRanges Rsamtools]; };
   leukemiasEset = derive2 { name="leukemiasEset"; version="1.17.0"; sha256="15c31vzfn83pfjj8bmvg4sl0hynlvaz2wcg3fzlxmlpbf6b5rqd7"; depends=[Biobase]; };
@@ -270,8 +286,9 @@ in with self; {
   lydata = derive2 { name="lydata"; version="1.7.0"; sha256="0lq17l0klsn081m2nd9hrx50nxksvf7186drby66qvq6bhw3vhms"; depends=[]; };
   mAPKLData = derive2 { name="mAPKLData"; version="1.13.0"; sha256="1h4x00a7rziqm3cqkddpp7ahrb36045yq71lskdjyp43k066jplw"; depends=[]; };
   mCSEAdata = derive2 { name="mCSEAdata"; version="1.1.0"; sha256="0rcfyk6mwlxgkk7q40djbcbd4kx4vyy79h6dxb37zd7mpzxj03nx"; depends=[]; };
-  mammaPrintData = derive2 { name="mammaPrintData"; version="1.17.0"; sha256="0gfhiz8wqdxx56an3yp5jagsr7bx131lia86yycvhyaylsj0pv7i"; depends=[]; };
+  mammaPrintData = derive2 { name="mammaPrintData"; version="1.17.2"; sha256="0015cz3czxzzrx7ba8lqr1a5i4nh1mns114br660y9d32j1nsw0f"; depends=[]; };
   maqcExpression4plex = derive2 { name="maqcExpression4plex"; version="1.25.0"; sha256="14m82492wb7jmqwjllnqak9rivyky1prcqgp1yn0g05c406fj0r9"; depends=[]; };
+  mcsurvdata = derive2 { name="mcsurvdata"; version="0.99.4"; sha256="0kv2gq9vr0z2sg8v7mv0ky66gvwf2hbaisw2g02a81bzhjvyjky8"; depends=[AnnotationHub Biobase ExperimentHub]; };
   metaMSdata = derive2 { name="metaMSdata"; version="1.17.0"; sha256="0j6h0s75w50jp3lcfs5cilqaqhhinlfn9c6zlpki6906fj1q6dxx"; depends=[]; };
   methyvimData = derive2 { name="methyvimData"; version="1.3.0"; sha256="0jacj9jyqs5x11xds6bindab6q96br95r37dxmgxw5gxl9lcn6ql"; depends=[minfi]; };
   miRNATarget = derive2 { name="miRNATarget"; version="1.19.0"; sha256="05x4vl8x2brm3bj04kddzcqjnm72jw29prmcwr1ildbaadmzh3fg"; depends=[Biobase]; };
@@ -284,12 +301,12 @@ in with self; {
   mosaicsExample = derive2 { name="mosaicsExample"; version="1.19.0"; sha256="17xvlaxlw6jn7w81dyg74n84nny6apaxv8b7qbv7gcyil3h2xr7f"; depends=[]; };
   mouse4302barcodevecs = derive2 { name="mouse4302barcodevecs"; version="1.19.0"; sha256="1y7vkiqp4mkf16mpl5yl1jzmh1fv67d6k4i8qfi1lm68q2av9ggv"; depends=[]; };
   msPurityData = derive2 { name="msPurityData"; version="1.9.0"; sha256="0z7gs75bci301mhhp9j8lxpivjns2bmr51vsz04d4k308j19w1wv"; depends=[]; };
-  msd16s = derive2 { name="msd16s"; version="0.115.0"; sha256="1gspbva55x3bz2xzgdm9yfif0rgbd9gz9alswh1cy1kj99b0qk54"; depends=[Biobase metagenomeSeq]; };
+  msd16s = derive2 { name="msd16s"; version="1.1.0"; sha256="09zjzad3blq6i1m6fnkfjpllnvjn9vlrlc075gcm2gpwcx4w775a"; depends=[Biobase metagenomeSeq]; };
   msdata = derive2 { name="msdata"; version="0.21.0"; sha256="1srm1djnzfrj6klzxm2s721glk75lakb2428arqn3bm8vzvqw5vy"; depends=[]; };
-  msqc1 = derive2 { name="msqc1"; version="1.9.0"; sha256="0qdn1n6nisabv1iq8xqv3h14vyjwpc8576gl88km0kfd6pwwyij2"; depends=[lattice]; };
+  msqc1 = derive2 { name="msqc1"; version="1.9.1"; sha256="041fz9md3q95p1cwc7bcqam2z555sin2ib7ryssp79hp8iibx50g"; depends=[lattice]; };
   mtbls2 = derive2 { name="mtbls2"; version="1.11.0"; sha256="1ismd5yp3vgj1cqp4y92gy5z856bs6sy3fgbigjjba2rrb3m4k1z"; depends=[]; };
   mvoutData = derive2 { name="mvoutData"; version="1.17.0"; sha256="13kakn04xrngx9m80m1gqwdx3f75qixy6h9y0jvh16jk49kdnxcd"; depends=[affy Biobase lumi]; };
-  pRolocdata = derive2 { name="pRolocdata"; version="1.19.1"; sha256="1bh5qq8q0ar380nbci4y2bij19imgb5b7q5yf71mmlsxbk3284fz"; depends=[Biobase MSnbase]; };
+  pRolocdata = derive2 { name="pRolocdata"; version="1.19.5"; sha256="0gci5k1wxmnwy76nhnpjm9hysxpzjz29xw8j8srp96zn1bskaayi"; depends=[Biobase MSnbase]; };
   parathyroidSE = derive2 { name="parathyroidSE"; version="1.19.0"; sha256="1dmnm348yxa9p6lnia4iiil1s4jkxj1n83frhml06brnqymbb9wn"; depends=[SummarizedExperiment]; };
   pasilla = derive2 { name="pasilla"; version="1.9.0"; sha256="09rzh3w8nki9gqsk3pznk867ipg7s7imz7ma67cl0rh8pz2vg05i"; depends=[]; };
   pasillaBamSubset = derive2 { name="pasillaBamSubset"; version="0.19.0"; sha256="0d2b4qav1m0whr7gwn2h2962qd72i3fc0y9c36k6nxr7jyfmv1jj"; depends=[]; };
@@ -299,7 +316,7 @@ in with self; {
   pcaGoPromoter_Rn_rn4 = derive2 { name="pcaGoPromoter.Rn.rn4"; version="1.17.0"; sha256="1qz6saflpsa9naj536k7ciqks95hb6l1z2v6srclqq7b45465h1b"; depends=[]; };
   pcxnData = derive2 { name="pcxnData"; version="2.3.0"; sha256="1whw0wrfq1dfbxpfcz9z749dh27fadxmwp3dln945qh0nrjli6zc"; depends=[]; };
   pd_atdschip_tiling = derive2 { name="pd.atdschip.tiling"; version="0.19.0"; sha256="1rfp34332p0fbx9yfb87rlhwwzjy1pm3zf372pvhv1r7qm8w3dyh"; depends=[Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
-  pepDat = derive2 { name="pepDat"; version="0.115.0"; sha256="0rzwyq7aj3rf6sghybsn27vimlqv8z78bq5xs5jibjvwy697xczn"; depends=[GenomicRanges]; };
+  pepDat = derive2 { name="pepDat"; version="1.1.0"; sha256="0yqlsdzjqwdvjfy7p6rls2xy5bph75pivkvizj575pmagdviv882"; depends=[GenomicRanges]; };
   plasFIA = derive2 { name="plasFIA"; version="1.9.0"; sha256="0ivyvrx2wmr9wsi852h3fdkbc8qrxhx1gf21aiazlygz3x796fml"; depends=[proFIA]; };
   ppiData = derive2 { name="ppiData"; version="0.19.0"; sha256="0hglfcyzlz7j090qylilqxx9jhivk3ipkq6q0zn2grydrj0g0xib"; depends=[AnnotationDbi graph]; };
   prebsdata = derive2 { name="prebsdata"; version="1.17.0"; sha256="1jccx76j7xqbl4660f0akh6bnvhcvpn1wkn2hchbv9w1s9ywy9pi"; depends=[]; };
@@ -310,37 +327,40 @@ in with self; {
   prostateCancerVarambally = derive2 { name="prostateCancerVarambally"; version="1.9.0"; sha256="02vg37vllda3yvw6lq7xggil6l3n7v4y37s2cqixqrrmnczzqb2z"; depends=[Biobase]; };
   pumadata = derive2 { name="pumadata"; version="2.17.0"; sha256="0ag7kv1k9jaj943l0szxlk2qfx5mlpspwsrnnyxxcpi3s8r8nyn4"; depends=[affy Biobase oligo puma]; };
   qPLEXdata = derive2 { name="qPLEXdata"; version="0.99.1"; sha256="05v19rlbskvy15504ys8x3s2hhbdzwnyz3dwjas6h0b7rs3d51p7"; depends=[dplyr knitr MSnbase qPLEXanalyzer]; };
-  rRDPData = derive2 { name="rRDPData"; version="0.115.0"; sha256="1z334hpwrl3f23r7cyr6zr7niwmccmxpwzhydgwlimvkdg8yn2gv"; depends=[rRDP]; };
-  rcellminerData = derive2 { name="rcellminerData"; version="2.3.0"; sha256="1qms5v7jpvncdkllcan0xnqxhbxsh3kij4hcin8m4xd470vnf0xs"; depends=[Biobase]; };
+  rRDPData = derive2 { name="rRDPData"; version="1.1.0"; sha256="16xk33bry0203sr79lzs89pwzbqds29894fc2hjr9qs624wrzvnk"; depends=[rRDP]; };
+  rcellminerData = derive2 { name="rcellminerData"; version="2.3.1"; sha256="1i149vpfm873nzykbxf93rkrmyjshri5xi7awmxf60yiwacbafkk"; depends=[Biobase]; };
   restfulSEData = derive2 { name="restfulSEData"; version="1.3.0"; sha256="01vbzdx354qpl58lznn9938jn93rf9nikwjfmy1w33z5cmirc7ad"; depends=[ExperimentHub SummarizedExperiment]; };
   rheumaticConditionWOLLBOLD = derive2 { name="rheumaticConditionWOLLBOLD"; version="1.19.0"; sha256="1bcn3s36w3asb2di8851wg67dpx3rwalw9php1sklzrbh2f7jazs"; depends=[]; };
   sampleClassifierData = derive2 { name="sampleClassifierData"; version="1.5.0"; sha256="06p4cq30diwx5flxc31lw3k6z66y6villf99qq99f4ab5x3gad94"; depends=[SummarizedExperiment]; };
   scRNAseq = derive2 { name="scRNAseq"; version="1.7.0"; sha256="15cxr52qakxhsbjnm8vl33qlwbvl3lghkrk4l2v0dih4mw4g65nb"; depends=[SummarizedExperiment]; };
   seq2pathway_data = derive2 { name="seq2pathway.data"; version="1.13.0"; sha256="0z9dspkjvjn20q542bjq7xyc7fpy76y3ic01h14cvql42m0vhl53"; depends=[]; };
   seqCNA_annot = derive2 { name="seqCNA.annot"; version="1.17.0"; sha256="0hz9vf8fplqm3gfrfiiirm0w6g9x6bjq7l96275aizbx3g6a80kb"; depends=[]; };
-  seqc = derive2 { name="seqc"; version="1.15.0"; sha256="0xkc712swyr9w267vsbnyhpjif47mjbgkj52f0y4b2s7vs521h0s"; depends=[]; };
+  seqc = derive2 { name="seqc"; version="1.15.2"; sha256="1bc4ibhb7wr08c794m1ljy3hz4fy0vikavg7g7y6l3rjfvlns7lk"; depends=[Biobase]; };
   serumStimulation = derive2 { name="serumStimulation"; version="1.17.0"; sha256="153zq6qpk02mkk31v5sl129j50wiw9n8c7n28f39w0mzg93yjyv5"; depends=[]; };
-  sesameData = derive2 { name="sesameData"; version="0.99.3"; sha256="0q9j82m0b9vpl7an4kqbbzlpj50qv47fbi7anj7kkxdk8w2ck0l3"; depends=[AnnotationHub curl ExperimentHub]; };
-  seventyGeneData = derive2 { name="seventyGeneData"; version="1.17.0"; sha256="00fmvpvp2bi2cv0441bzchir91iz8ip077m350jhp99nzcj6khg3"; depends=[]; };
-  shinyMethylData = derive2 { name="shinyMethylData"; version="0.115.0"; sha256="0d1sm0bcfwd7q644jdxp069q4qjbzrg44srm60knxhp1kbf2ll5i"; depends=[]; };
+  sesameData = derive2 { name="sesameData"; version="0.99.5"; sha256="0y2xkxrbj5fla75rq4iysa5ckmvv6fnbi06nk372n0gyvi0v5w8d"; depends=[AnnotationHub curl ExperimentHub]; };
+  seventyGeneData = derive2 { name="seventyGeneData"; version="1.17.3"; sha256="1aq5pzj70alv4kmi79kdyc9v0441gvfgibzf5j06zh6b2bc409x6"; depends=[]; };
+  shinyMethylData = derive2 { name="shinyMethylData"; version="1.1.0"; sha256="1qd8193vvs22x8hfy70ih2m5gx4s46hd0fas9ann198vv4rhygxz"; depends=[]; };
   simpIntLists = derive2 { name="simpIntLists"; version="1.17.0"; sha256="1cgr86ibyz4xmhsrmrr0qx8f1xhclw7q4mrrbr5znvy4nvhbzpz6"; depends=[]; };
   stemHypoxia = derive2 { name="stemHypoxia"; version="1.17.0"; sha256="076h70m11z178q1v58rbb1731nskck64sr4w29x1jby8h87rqkvk"; depends=[]; };
   stjudem = derive2 { name="stjudem"; version="1.21.0"; sha256="1ccr0zcqwffizqbd624j980kn40hmic2497mj2ws19chwqxaz24j"; depends=[]; };
   synapterdata = derive2 { name="synapterdata"; version="1.19.0"; sha256="1yppixbw3pxsaag1zfsd39p78d5l8702ysxxjgnmi50ak0lrwb2w"; depends=[synapter]; };
-  systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.9.1"; sha256="0hix85s3m17f7xlj4n4qdhff799r4hf78bc5gbpi8djykmbg3glq"; depends=[BiocGenerics]; };
+  systemPipeRdata = derive2 { name="systemPipeRdata"; version="1.9.4"; sha256="0k8nybycswz78l0v61nidnirw3i9k41f1150ssglxyhqsvxpn8xd"; depends=[BiocGenerics]; };
+  tcgaWGBSData_hg19 = derive2 { name="tcgaWGBSData.hg19"; version="0.99.3"; sha256="16p36sailxw14f051c3k89gz2i9blky0vx961s36mmnd5sqn6skn"; depends=[bsseq ExperimentHub knitr]; };
   tinesath1cdf = derive2 { name="tinesath1cdf"; version="1.19.0"; sha256="0mpj8j8s9380lf830b862k2rj1mpfa3vflkai5bacwnx9i3dbmnz"; depends=[]; };
   tinesath1probe = derive2 { name="tinesath1probe"; version="1.19.0"; sha256="07fyj1vdpzkz8iw6d9bqxgi4482rvq0r945p3rxa5a0cvwcsh1xi"; depends=[AnnotationDbi]; };
   tissueTreg = derive2 { name="tissueTreg"; version="1.1.0"; sha256="1whm1a9r5bmrdzqchv7qzgnxnclq1qbzqjv0p6f6d6y7mw3rr6f6"; depends=[]; };
   tofsimsData = derive2 { name="tofsimsData"; version="1.9.0"; sha256="17pwxdik4phg1cc10ycp2j38n63l1rfna8pzz16j05858ig24lif"; depends=[]; };
-  topdownrdata = derive2 { name="topdownrdata"; version="1.3.0"; sha256="095mhjpni166p351k50y0605gb3ydsrhdnf8i92w6q84qnl9dapw"; depends=[]; };
+  topdownrdata = derive2 { name="topdownrdata"; version="1.3.0"; sha256="095mhjpni166p351k50y0605gb3ydsrhdnf8i92w6q84qnl9dapw"; depends=[topdownr]; };
   tweeDEseqCountData = derive2 { name="tweeDEseqCountData"; version="1.19.0"; sha256="1gby12vp7b88h3g86r5r01lj86chs30q505qijv3zq769px7fd2g"; depends=[Biobase]; };
-  tximportData = derive2 { name="tximportData"; version="1.9.0"; sha256="06jmawmj6sssjjp2jhfzwbzhp8lv2jwbgaaz9qfwbxhnscxzj3cj"; depends=[]; };
-  vulcandata = derive2 { name="vulcandata"; version="1.3.0"; sha256="1b7wn4kvqlb4fww98505nwnwfj5knsivx9fzli5fda2k4vzf6d4x"; depends=[]; };
+  tximportData = derive2 { name="tximportData"; version="1.9.2"; sha256="0j7nwkfrvli8wx3jvrfn1qygvzyzvmzlp5vq529ssqf6mka8i2r3"; depends=[]; };
+  vulcandata = derive2 { name="vulcandata"; version="1.3.1"; sha256="1jgiryn6cpmbipaif5d5yhwrl692hc6nac5abjip31l0rqmf4qig"; depends=[]; };
   waveTilingData = derive2 { name="waveTilingData"; version="1.17.0"; sha256="1w0wvnk4r7vvg9xvqmpmwzbp1sr7plg214d6wgdwgmp9bm785vxf"; depends=[]; };
   yeastCC = derive2 { name="yeastCC"; version="1.21.0"; sha256="1kbhbqcab7p3p160xvgwka8gfhxnjl05p9hxb7jjixi4yr30dzvj"; depends=[Biobase]; };
   yeastExpData = derive2 { name="yeastExpData"; version="0.27.0"; sha256="13vz99brk9bb10swlrisiiwilyjn6pl1z3arw47sahm7grw4sgpc"; depends=[graph]; };
   yeastGSData = derive2 { name="yeastGSData"; version="0.19.0"; sha256="06gnrh6kll5rmdvhigrf7blyyap6dz517gkhx2ljvlbwwz1hd35l"; depends=[]; };
   yeastNagalakshmi = derive2 { name="yeastNagalakshmi"; version="1.17.0"; sha256="0xq65383vmh1jnfxnfhrzfdhr5s0qzy0xb844d8lvmsn77mq7jpr"; depends=[]; };
+  yeastRNASeq = derive2 { name="yeastRNASeq"; version="0.19.0"; sha256="0sy72a0dvqq75hg599nfq6rv9frjwmvzqyissksa4dpbm8n3q086"; depends=[]; };
+  yri1kgv = derive2 { name="yri1kgv"; version="0.23.0"; sha256="08i7iz0shrhh3pnn88x3fnkpqrics4nq43fcwzkk1582j1spg8yr"; depends=[Biobase GGBase]; };
   yriMulti = derive2 { name="yriMulti"; version="0.11.0"; sha256="0gsr2y94hfmjmpz37y7q80wnkhlz8q028qn7dwm15a5rvzvs8ccv"; depends=[dsQTL GenomeInfoDb GenomicFiles GenomicRanges geuvPack gQTLBase Homo_sapiens MultiAssayExperiment SummarizedExperiment VariantAnnotation]; };
-  zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="0.115.0"; sha256="11lmhpd94vywkir5m02qb7j278k7hjlp085xq9wgaxmr07vxzyy6"; depends=[]; };
+  zebrafishRNASeq = derive2 { name="zebrafishRNASeq"; version="1.1.0"; sha256="1sfdzs0s0jjrm36v016zf4xbw2rl2gfibzbzvgj7vark30f8w960"; depends=[]; };
 }
diff --git a/pkgs/development/r-modules/bioc-packages.nix b/pkgs/development/r-modules/bioc-packages.nix
index 78823c4f4688..05715a99922b 100644
--- a/pkgs/development/r-modules/bioc-packages.nix
+++ b/pkgs/development/r-modules/bioc-packages.nix
@@ -6,11 +6,12 @@
 { self, derive }:
 let derive2 = derive { biocVersion = "3.8"; };
 in with self; {
-  ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.11.3"; sha256="08rrz6binj0hilji6gkdmqvwj0hp1b9rk6jx10gvn6wi3hg1nv4n"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; };
+  ABAEnrichment = derive2 { name="ABAEnrichment"; version="1.11.7"; sha256="0gzv8nphchispdrlmbx28ps6k7g8ylqldf7p25pimjba700ydjdd"; depends=[ABAData data_table GOfuncR gplots gtools Rcpp]; };
   ABSSeq = derive2 { name="ABSSeq"; version="1.35.2"; sha256="0x86y1j8h9ad4vyzadb4xngzfihz73jcy2qrn5d2bpigv3m3rar5"; depends=[limma locfit]; };
   ABarray = derive2 { name="ABarray"; version="1.49.0"; sha256="1rnsk81lhybj612rb2b886al567m58ax77kng4ip43ivzd3yssil"; depends=[Biobase multtest]; };
+  ACE = derive2 { name="ACE"; version="0.99.10"; sha256="1a2mkw04fdvdfdva0gwsh0d7xkg49gi7dhsxz8ban9g1kn1g5w6z"; depends=[Biobase ggplot2 QDNAseq]; };
   ACME = derive2 { name="ACME"; version="2.37.0"; sha256="1ihpzaxhpdg8lvd30g9xhjhsil34s7w8w06cy04dp7zv117yda55"; depends=[Biobase BiocGenerics]; };
-  ADaCGH2 = derive2 { name="ADaCGH2"; version="2.21.0"; sha256="107hm5klybm8lp12bjir6gjcka8a5q4c54nvq3sn0avvzcj5caf4"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; };
+  ADaCGH2 = derive2 { name="ADaCGH2"; version="2.21.1"; sha256="0ph0glq1ngmhgh8vv1zdm0m6flfkp576fk7qdyb3prc5rc730yxr"; depends=[aCGH bit cluster DNAcopy ff ffbase GLAD snapCGH tilingArray waveslim]; };
   AGDEX = derive2 { name="AGDEX"; version="1.29.0"; sha256="0bidzm02g5f4ivnrymg9m7kpmjlg93zv1alpcsjx6ssbaix42r33"; depends=[Biobase GSEABase]; };
   AIMS = derive2 { name="AIMS"; version="1.13.0"; sha256="15ch50fw03q66d7x0asri8ff5xr82r8rxd46i80zij1fg27avkxa"; depends=[Biobase e1071]; };
   ALDEx2 = derive2 { name="ALDEx2"; version="1.13.0"; sha256="01c4bjbybivjqq1hl9dpmndn3mfk595yyjjkljcxbza6wax99rd0"; depends=[BiocParallel GenomicRanges IRanges multtest S4Vectors SummarizedExperiment]; };
@@ -20,679 +21,728 @@ in with self; {
   ASAFE = derive2 { name="ASAFE"; version="1.7.0"; sha256="0p6q9zpfqf7cz1lb0cm75ddhhcrdf90dpblrxhn8hkh5wgn3yp0m"; depends=[]; };
   ASEB = derive2 { name="ASEB"; version="1.25.0"; sha256="00wwdg07zgqbaparqail1pnffx5r63007rq65shlxda483f3ywr1"; depends=[]; };
   ASGSCA = derive2 { name="ASGSCA"; version="1.15.0"; sha256="0f9mih8bhv4ibwqni7z94n4v3kz5cm2paqdp5c0y7hvg9i836gyl"; depends=[MASS Matrix]; };
-  ASICS = derive2 { name="ASICS"; version="1.1.0"; sha256="0a81s0yhn4zb8jyq889sz94rf22mrmsnpika0j1hs1sc3h2li3v2"; depends=[BiocParallel ggplot2 gridExtra plyr quadprog ropls speaq SummarizedExperiment zoo]; };
+  ASICS = derive2 { name="ASICS"; version="1.1.1"; sha256="18arka0aj4y82ngdx458ilnvxrv45bfjj6dz1wz28frsz7bzhry2"; depends=[BiocParallel ggplot2 gridExtra plyr quadprog ropls speaq SummarizedExperiment zoo]; };
   ASSET = derive2 { name="ASSET"; version="1.99.0"; sha256="1c43xdlgqpmq192cxfbpsq6f767zlcmpm7am539673yr6fc8ql7i"; depends=[MASS msm rmeta]; };
-  ASSIGN = derive2 { name="ASSIGN"; version="1.17.1"; sha256="06rzdkdq66sl0lxbr3mvw6ybgs2laxyx7iaqgmjwf96b2j869jqb"; depends=[ggplot2 gplots msm Rlab sva]; };
-  ASpli = derive2 { name="ASpli"; version="1.7.0"; sha256="19i2says6d2sl160537vzvj9iz5zmrv6xlyprv0787n7yswssy6s"; depends=[AnnotationDbi BiocGenerics BiocStyle edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rsamtools S4Vectors]; };
-  ATACseqQC = derive2 { name="ATACseqQC"; version="1.5.1"; sha256="15spnf3a5hangks4k07gyjcnr6cjzxim4zjrjjilyx6jmfc7wiib"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; };
-  AUCell = derive2 { name="AUCell"; version="1.3.4"; sha256="1v53cq58jj3nvgrj7xrypmw0g4882yma950yc7k9189sdbbxxdm6"; depends=[data_table GSEABase mixtools R_utils shiny SummarizedExperiment]; };
+  ASSIGN = derive2 { name="ASSIGN"; version="1.17.4"; sha256="01ly4vislijmaa6vfs4nsawhf3jv7xb5jaa7iaizl7gpm7jnv7bp"; depends=[ggplot2 gplots msm Rlab sva yaml]; };
+  ASpli = derive2 { name="ASpli"; version="1.7.2"; sha256="1x30c1srl6sgjpl2milsc06ix5b8ds3kgz2h5wzg9wl4jsfswml3"; depends=[AnnotationDbi BiocGenerics BiocStyle edgeR GenomicAlignments GenomicFeatures GenomicRanges Gviz IRanges Rsamtools S4Vectors]; };
+  ATACseqQC = derive2 { name="ATACseqQC"; version="1.5.7"; sha256="06aq30lj97xpxxm5f46qlnl2pik44hh4jr7wcbsvjyf3xx99k3za"; depends=[BiocGenerics Biostrings BSgenome ChIPpeakAnno GenomeInfoDb GenomicAlignments GenomicRanges GenomicScores IRanges KernSmooth limma motifStack preseqR randomForest Rsamtools rtracklayer S4Vectors]; };
+  AUCell = derive2 { name="AUCell"; version="1.3.6"; sha256="1i88w2jkydspgiw6vdpi1bspajr1y8jwmlxakydm7ww8azib4cwl"; depends=[data_table GSEABase mixtools R_utils shiny SummarizedExperiment]; };
+  AffiXcan = derive2 { name="AffiXcan"; version="0.99.15"; sha256="0d5y1s2d30rkwmnr206xjf9rdzn099kirh9pxn0qddjhxl6n6d6c"; depends=[BiocParallel MultiAssayExperiment SummarizedExperiment]; };
   AffyCompatible = derive2 { name="AffyCompatible"; version="1.41.0"; sha256="1gxk7kggb29hhfqz2a1g6yqy8mbg0x7gvajnnqgamdggylg7zz32"; depends=[Biostrings RCurl XML]; };
   AffyExpress = derive2 { name="AffyExpress"; version="1.47.0"; sha256="1ph5vgm6hxifdyg8v3vgcqwm7k1fh4d3jnf10i4p7x4gi00xycan"; depends=[affy limma]; };
   AffyRNADegradation = derive2 { name="AffyRNADegradation"; version="1.27.0"; sha256="17m0sn1rb6485lvrpn677z3y540pc93ykbyjg1plrl3qby6nxc5q"; depends=[affy]; };
   AgiMicroRna = derive2 { name="AgiMicroRna"; version="2.31.0"; sha256="1hxvi9hdx8shikljwbh60k4ylir2hdibkccqd5wr4hb08spnam4j"; depends=[affy affycoretools Biobase limma preprocessCore]; };
-  AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.19.0"; sha256="13cw6k6xgkillkj7jfgflgb42nfb85hj919yd1i0css4zi9gxd2w"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; };
+  AllelicImbalance = derive2 { name="AllelicImbalance"; version="1.19.1"; sha256="14wh237bkzkczvbsqfv4fsgd1plc7nn2p77a6gcb7pgwz1lbq9is"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gridExtra Gviz IRanges lattice latticeExtra nlme Rsamtools S4Vectors seqinr SummarizedExperiment VariantAnnotation]; };
+  AnalysisPageServer = derive2 { name="AnalysisPageServer"; version="1.15.3"; sha256="1xq8cp8yhjnvrr7wp16zi24qjrwchx3l95w4302qh5hfngr3c8xn"; depends=[Biobase graph log4r rjson]; };
   Anaquin = derive2 { name="Anaquin"; version="2.5.0"; sha256="1cqrm7pmirdd23dw8lvrdjfkjp6rgx15s8h88jbilcv7qajg32jc"; depends=[DESeq2 ggplot2 knitr locfit plyr qvalue ROCR]; };
-  AneuFinder = derive2 { name="AneuFinder"; version="1.9.0"; sha256="1b0rrnxb8ldw9mxva42m0jj6r2xjn91rnrw409dmk365j8nxva2f"; depends=[AneuFinderData bamsignals Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; };
+  AneuFinder = derive2 { name="AneuFinder"; version="1.9.1"; sha256="0grk4npv8lkf71s9nacmz29g87f7avrfsyb7lpljpg8ndq9cddx3"; depends=[AneuFinderData bamsignals Biostrings cowplot DNAcopy doParallel ecp foreach GenomeInfoDb GenomicAlignments GenomicRanges ggdendro ggplot2 ggrepel IRanges mclust ReorderCluster reshape2 Rsamtools S4Vectors]; };
   AnnotationDbi = derive2 { name="AnnotationDbi"; version="1.43.1"; sha256="150mxlr5fcid4vnv8gh0imr9y9lzgyxrmvzmah4l8kg7r5rllm6k"; depends=[Biobase BiocGenerics DBI IRanges RSQLite S4Vectors]; };
   AnnotationFilter = derive2 { name="AnnotationFilter"; version="1.5.2"; sha256="12lkv4dg25r5p77s84xzyh3aw8pybcdrkvqf21n8xv41gxpycdkq"; depends=[GenomicRanges lazyeval]; };
-  AnnotationForge = derive2 { name="AnnotationForge"; version="1.23.0"; sha256="07b8m6g4zm1lj6pxscjyg7b39km8wx68jiqimdd7ddkzj9xqyvg8"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; };
+  AnnotationForge = derive2 { name="AnnotationForge"; version="1.23.4"; sha256="1q0j4nn6hb9h22cnqdgqb89710j86kiayyaf98n47pcdyb96024d"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl RSQLite S4Vectors XML]; };
   AnnotationFuncs = derive2 { name="AnnotationFuncs"; version="1.31.0"; sha256="1sf2afh9s94k1j9xx7csv7k1cah52s8ks7bhjr13m5c2dad3df1f"; depends=[AnnotationDbi DBI]; };
-  AnnotationHub = derive2 { name="AnnotationHub"; version="2.13.1"; sha256="1zhnadp24h7hxjgdgp4x4c2iwnciw6gvi6ycxbql1yilqr3ip6w0"; depends=[AnnotationDbi BiocGenerics BiocInstaller curl httr interactiveDisplayBase RSQLite S4Vectors yaml]; };
-  AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.11.1"; sha256="1s7bfmynwx6y555bsxp3cgkfa3gnc0ll476qydszw4agspp8wyn9"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocGenerics BiocInstaller biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges GEOquery IRanges jsonlite OrganismDbi rBiopaxParser RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; };
-  ArrayExpress = derive2 { name="ArrayExpress"; version="1.41.0"; sha256="1xac01vhc8cdx7cp32qw4cfqyl20my5wdw3jf9mwb6qybjk557w7"; depends=[Biobase limma oligo XML]; };
+  AnnotationHub = derive2 { name="AnnotationHub"; version="2.13.10"; sha256="087nk0wmkl3k7i00v9lbxq44gzj7dnyjahbhrq3zjx6qmg4l8dia"; depends=[AnnotationDbi BiocGenerics BiocManager curl httr interactiveDisplayBase RSQLite S4Vectors yaml]; };
+  AnnotationHubData = derive2 { name="AnnotationHubData"; version="1.11.14"; sha256="0056p06iyw81pzyy52ydgzibqin84xrmsn5jyaa9a6qs3agm62h6"; depends=[AnnotationDbi AnnotationForge AnnotationHub Biobase BiocGenerics BiocManager biocViews Biostrings DBI futile_logger GenomeInfoDb GenomicFeatures GenomicRanges IRanges jsonlite OrganismDbi rBiopaxParser RCurl Rsamtools RSQLite rtracklayer S4Vectors XML]; };
+  ArrayExpress = derive2 { name="ArrayExpress"; version="1.41.1"; sha256="0x5fvbp959x0pczb8qmy70npdx6p8km5aq6jbfmna5d5l8azd11q"; depends=[Biobase limma oligo XML]; };
   ArrayExpressHTS = derive2 { name="ArrayExpressHTS"; version="1.31.0"; sha256="16j2a1qyhykzyqggfwaxvp4ay6l9ckimd4djh1qdp3ayqaign04r"; depends=[Biobase BiocGenerics biomaRt Biostrings bitops DESeq edgeR GenomicRanges Hmisc IRanges R2HTML RColorBrewer rJava Rsamtools sampling sendmailR ShortRead snow svMisc XML]; };
   ArrayTV = derive2 { name="ArrayTV"; version="1.19.0"; sha256="1swim5w679hskgwfdm9fbfdwhlra7wp4fgsl38vmainayna90xw9"; depends=[DNAcopy foreach IRanges oligoClasses S4Vectors]; };
   ArrayTools = derive2 { name="ArrayTools"; version="1.41.0"; sha256="1pkv72pkiqxjb0f642p7gdc0gfr7xg9vc96awi149a5z71bbykli"; depends=[affy Biobase limma xtable]; };
+  AssessORF = derive2 { name="AssessORF"; version="0.99.21"; sha256="1k2b3psllayv8rwgc7jhhyr73apd51wbwgfhn1lawfvpn2k07gqr"; depends=[Biostrings DECIPHER GenomicRanges IRanges]; };
   BAC = derive2 { name="BAC"; version="1.41.0"; sha256="0jk4drgs8w1fvarkhm4sbkm9ls6vh67vja9f2f29p4n0ykgf06y2"; depends=[]; };
   BADER = derive2 { name="BADER"; version="1.19.0"; sha256="1y2lw5f6l32q3p3bral7bz2h57fvd7mpj00q4ds6l3y8j8grp3vf"; depends=[]; };
-  BAGS = derive2 { name="BAGS"; version="2.21.0"; sha256="1j4284wvpabpzvb3khslfraz6wz5yznv9gsly5xaskximq1i1h74"; depends=[Biobase breastCancerVDX]; };
-  BASiCS = derive2 { name="BASiCS"; version="1.3.3"; sha256="0rljf429zjglh7an6m09m0d8skykciksh2k8vjc6jm3rbsl4j1k5"; depends=[BiocGenerics coda data_table ggplot2 KernSmooth MASS matrixStats Rcpp RcppArmadillo S4Vectors scran SingleCellExperiment SummarizedExperiment testthat]; };
-  BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.11.0"; sha256="0nma095v38ysx0gjjrp6xslwmi78kgqqzqlmcvbf61qgbpggnqbj"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; };
+  BAGS = derive2 { name="BAGS"; version="2.21.2"; sha256="14h103ycmxwpa02binhla0ys5fls2whdgjqj4g40pv96nj5kpwav"; depends=[Biobase breastCancerVDX]; };
+  BASiCS = derive2 { name="BASiCS"; version="1.3.24"; sha256="0rxvwpnfvw3nbr8rbrm64hzxx1vzq7rq9jaq20x1nrkkx46gj5s7"; depends=[BiocGenerics coda data_table ggplot2 KernSmooth MASS matrixStats Rcpp RcppArmadillo S4Vectors scran SingleCellExperiment SummarizedExperiment testthat]; };
+  BBCAnalyzer = derive2 { name="BBCAnalyzer"; version="1.11.1"; sha256="1gzivdxz02d27pkad6h6k0n1damph0vncslx70s3h6ypcb3g731j"; depends=[Biostrings GenomicRanges IRanges Rsamtools SummarizedExperiment VariantAnnotation]; };
   BCRANK = derive2 { name="BCRANK"; version="1.43.0"; sha256="06082ki14mb4xrbx32lpi7q06bsnmjsc08ggx0si0fxdbf0584r5"; depends=[Biostrings]; };
-  BEARscc = derive2 { name="BEARscc"; version="1.1.0"; sha256="169n512vaa23l3qaxxxa8x6zhy7jqmflsr43dn3k8qncwk1q7pml"; depends=[data_table ggplot2 SingleCellExperiment]; };
+  BEARscc = derive2 { name="BEARscc"; version="1.1.1"; sha256="180r40a5f7fmck4jly7d4qrjpyb1xqgp8w6aasvx7qfd9vwqbfbx"; depends=[data_table ggplot2 SingleCellExperiment]; };
   BEAT = derive2 { name="BEAT"; version="1.19.0"; sha256="1c3csghkdbqmaj36bg75fnx626rp2myykwc4hpxlij1sy8a9pjra"; depends=[Biostrings BSgenome GenomicRanges ShortRead]; };
-  BEclear = derive2 { name="BEclear"; version="1.13.0"; sha256="0swsrlf6rdxkdbncf5f18zxfimmgiay42i12lg5apb5rk9in890c"; depends=[Matrix snowfall]; };
+  BEclear = derive2 { name="BEclear"; version="1.13.11"; sha256="1c7bgnpj9wx839dhal4rlfamaxngqxdq2pm3paykqf2cjg278d37"; depends=[BiocParallel data_table futile_logger Matrix Rdpack]; };
   BGmix = derive2 { name="BGmix"; version="1.41.0"; sha256="1v6rpn322g4qp3q3hisvi419nnslzpfqdp37bdc1spmsh88inb1j"; depends=[KernSmooth]; };
   BHC = derive2 { name="BHC"; version="1.33.0"; sha256="18jpic1xk5gnxfw7r4hw0591lmrcncv412qd1q08l2nqw0a24895"; depends=[]; };
   BLMA = derive2 { name="BLMA"; version="1.5.0"; sha256="1cpy2dx1da1bn0wc43fwva2akq473ww4nz241dq5xfrk2hwwkz91"; depends=[Biobase graph GSA limma PADOG ROntoTools]; };
-  BPRMeth = derive2 { name="BPRMeth"; version="1.7.13"; sha256="1ypinfv1z6gw73whx0fjkz9h6sl6lzwfcsnfpjrwy94q59rpzyw0"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; };
-  BRAIN = derive2 { name="BRAIN"; version="1.27.0"; sha256="1pssh10b8pqy7f4hs1akws8lvikd0j9rwblrzsymvnnl5qf8rdqm"; depends=[Biostrings lattice PolynomF]; };
-  BSgenome = derive2 { name="BSgenome"; version="1.49.1"; sha256="1i0qrm065407zvi454gjdx3rykabf5zwl18l23d7zvl5d9cwcpv2"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; };
+  BPRMeth = derive2 { name="BPRMeth"; version="1.7.14"; sha256="0gbklnxs0g236f839yq9p3x8yacgv4248yyp1fgazr6q9gcgqqdf"; depends=[assertthat BiocStyle cowplot data_table doParallel e1071 earth foreach GenomicRanges ggplot2 IRanges kernlab magrittr MASS matrixcalc mvtnorm randomForest Rcpp RcppArmadillo S4Vectors truncnorm]; };
+  BRAIN = derive2 { name="BRAIN"; version="1.27.1"; sha256="04an1yqsfwkpwr31l4l21p09yr3jbdm4v7m89vg4q0rvlmha31ss"; depends=[Biostrings lattice PolynomF]; };
+  BSgenome = derive2 { name="BSgenome"; version="1.49.5"; sha256="18z80kskhgmhar2njmpxba5fg4d6fz651n3bc4lvfxpvn3j2nh9f"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools rtracklayer S4Vectors XVector]; };
   BUMHMM = derive2 { name="BUMHMM"; version="1.5.0"; sha256="0qs117jr903zyr55xql7793nr8scyqhfn9acnw4d29im2jwfhclq"; depends=[Biostrings devtools gtools IRanges stringi SummarizedExperiment]; };
   BUS = derive2 { name="BUS"; version="1.37.0"; sha256="0rd0d1wm65q1x821l74y96w48dbqdlbd8gzz04fwz2lbpp4x6645"; depends=[infotheo minet]; };
+  BUScorrect = derive2 { name="BUScorrect"; version="0.99.13"; sha256="1cbmr2xq1246cypjkf0l05h077bbrhigdhxx6fqkvzrgixw742r3"; depends=[gplots SummarizedExperiment]; };
   BaalChIP = derive2 { name="BaalChIP"; version="1.7.0"; sha256="18jvr700mqfqalby53jhjskz2wrfbyl3x6bgx28yxzzg0hk7d897"; depends=[coda doBy doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges reshape2 Rsamtools scales]; };
-  BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.9.0"; sha256="0piq8lc4p23q2y3606kk9y52iwg7nc8jbnmicq44m2gnmp5b9r0m"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; };
-  BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.25.0"; sha256="14p570w1ld2va2xjzk4aq64brx25h8mizcicyrvmlnppj7cwbpmm"; depends=[RCurl RJSONIO]; };
+  BadRegionFinder = derive2 { name="BadRegionFinder"; version="1.9.1"; sha256="07m2lj91nk88rjjlqgrqvfwdmvvhsk406bq7wbd3a18hawljrcr6"; depends=[biomaRt GenomicRanges Rsamtools S4Vectors VariantAnnotation]; };
+  BaseSpaceR = derive2 { name="BaseSpaceR"; version="1.25.1"; sha256="0636123345m2hgip2l7wpbppkav6nryskq3r8sdby09yw3xf8yny"; depends=[RCurl RJSONIO]; };
   Basic4Cseq = derive2 { name="Basic4Cseq"; version="1.17.0"; sha256="0ynfj4x0hkjxxza8v85kda2a5rrmwzjh1am3ffnv1mvpi3dnb95l"; depends=[Biostrings BSgenome_Ecoli_NCBI_20080805 caTools GenomicAlignments GenomicRanges RCircos]; };
   BasicSTARRseq = derive2 { name="BasicSTARRseq"; version="1.9.0"; sha256="074zndzd7dbz31khkn73a3jqfyacl56dd8b82zq5lykirw647zp4"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges S4Vectors]; };
-  BatchQC = derive2 { name="BatchQC"; version="1.9.0"; sha256="1vcpjbalsvlcmrg2wxckpkk1qczwhs5c9yzp7wyk0jff9ayccd7w"; depends=[corpcor d3heatmap ggvis gplots knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; };
+  BatchQC = derive2 { name="BatchQC"; version="1.9.2"; sha256="0cg9ymwq08a3jxzpzwqgazz98868swp4ijiaz0h1msp8v30bqydd"; depends=[corpcor d3heatmap ggvis gplots knitr limma Matrix matrixStats MCMCpack moments pander reshape2 rmarkdown shiny sva]; };
   BayesKnockdown = derive2 { name="BayesKnockdown"; version="1.7.0"; sha256="0ikq8bk4viw9kj55cci37cdicbmyq9p5fa0vxw0bsa9ichj47cl5"; depends=[Biobase]; };
   BayesPeak = derive2 { name="BayesPeak"; version="1.33.0"; sha256="0grhyp7i834sj1j2kavpk2ydy0970gjcvllxy05l9vs9cilhczgp"; depends=[IRanges]; };
   BeadDataPackR = derive2 { name="BeadDataPackR"; version="1.33.0"; sha256="0asbgmcidblxj82w5bv0g0c5l9w2nzyr7qparbxg2inxcqimsa37"; depends=[]; };
-  BgeeDB = derive2 { name="BgeeDB"; version="2.7.0"; sha256="07y8jh5r6rvx083gdcy7hdlpazmaj17mrbcqi6ysj8j0ipjxsrgv"; depends=[Biobase data_table digest dplyr graph RCurl tidyr topGO]; };
-  BiFET = derive2 { name="BiFET"; version="1.1.5"; sha256="0rghzii29k5sqm4bnf86mncly5gln9kn14nzjxb9ycpmls33nfx0"; depends=[GenomicRanges poibin]; };
-  BiGGR = derive2 { name="BiGGR"; version="1.17.0"; sha256="1nsjg5lk87i0mrby23jzfxs80cipq2dra4gx2v3mxphiqixrn92i"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; };
-  BiRewire = derive2 { name="BiRewire"; version="3.13.0"; sha256="10wgsw38774a6fzwhr98hxiangna3s1rb0i7dw2bvmkx9c6ldmbh"; depends=[igraph Matrix slam tsne]; };
+  BgeeDB = derive2 { name="BgeeDB"; version="2.7.2"; sha256="0rk6kfy78xxsd8zbvs2gdklncz5dzr6wayndf3bh7nm575d8jnrd"; depends=[Biobase data_table digest dplyr graph RCurl tidyr topGO]; };
+  BiFET = derive2 { name="BiFET"; version="1.1.8"; sha256="0h7lrhfjgxfchk4i1i6y65znr2dxh9zkiy9n6clvrby6aqrswgr3"; depends=[GenomicRanges poibin]; };
+  BiGGR = derive2 { name="BiGGR"; version="1.17.1"; sha256="18d57ia7vzgrwc8nzqjp368s7a6hqckcskp807xmk239ggrk9iii"; depends=[hyperdraw hypergraph LIM limSolve rsbml stringr]; };
+  BiRewire = derive2 { name="BiRewire"; version="3.13.3"; sha256="09i4mvpbfvnljvg87zgwawv5ahj7kaiqvwx7mlsqkrdzijclfqq3"; depends=[igraph Matrix slam tsne]; };
   BiSeq = derive2 { name="BiSeq"; version="1.21.0"; sha256="12wnihb693dk6ri3hqcm7cjyy0r3dffvjcfybypl75zsj42k7zb7"; depends=[betareg Biobase BiocGenerics Formula GenomeInfoDb GenomicRanges globaltest IRanges lokern rtracklayer S4Vectors SummarizedExperiment]; };
   BicARE = derive2 { name="BicARE"; version="1.39.0"; sha256="1gdglclrkrsxw7lks9rczhjy3ldsrl18qbk6h4f10d3rf6b147b1"; depends=[Biobase GSEABase multtest]; };
-  BioCor = derive2 { name="BioCor"; version="1.5.1"; sha256="0wfd7sapzxj135wp6kga0xb8z5ycvvhwdwh1307sh0k8k8wb5pd9"; depends=[BiocParallel GSEABase Matrix]; };
+  BioCor = derive2 { name="BioCor"; version="1.5.6"; sha256="1zy4yxwgx70f6sz09kva97p2gby4yjyrqn4zshrdr89npnk5h5rz"; depends=[BiocParallel GSEABase Matrix]; };
   BioMVCClass = derive2 { name="BioMVCClass"; version="1.49.0"; sha256="01v6bzq8jsqd3p2cpg0hlfccqzkr9fk9zkby2dg1npwrf27x6j4g"; depends=[Biobase graph MVCClass Rgraphviz]; };
   BioNet = derive2 { name="BioNet"; version="1.41.0"; sha256="039mzwvfamlxkqn9ipn7vab7qnnn0153sg7dcp4g5glfxgmqnngh"; depends=[AnnotationDbi Biobase graph igraph RBGL]; };
-  BioNetStat = derive2 { name="BioNetStat"; version="1.1.1"; sha256="1jr1z0shh0cspqmg0dqwwqhsljvl53aay19qpss5a64ifas8mzmr"; depends=[BiocParallel ggplot2 Hmisc igraph knitr pathview pheatmap plyr psych RColorBrewer RJSONIO shiny shinyBS whisker yaml]; };
+  BioNetStat = derive2 { name="BioNetStat"; version="1.1.2"; sha256="17iyf5k9mm3mqvw7vskk7vcmadrs4qxq69sx024j63ihiq6divkb"; depends=[BiocParallel ggplot2 Hmisc igraph knitr pathview pheatmap plyr psych RColorBrewer RJSONIO shiny shinyBS whisker yaml]; };
   BioQC = derive2 { name="BioQC"; version="1.9.0"; sha256="0v9czgv6n57nczg2ijz78dfknvmlbxbdrsi8c90wiyxr888gkb3m"; depends=[Biobase Rcpp]; };
-  BioSeqClass = derive2 { name="BioSeqClass"; version="1.39.0"; sha256="1390g5saw7jf6q7k5kavql595jw8xd8y53lwlfmxfgiapf2nvg36"; depends=[Biobase Biostrings class e1071 foreign ipred klaR nnet party randomForest rpart scatterplot3d tree]; };
-  Biobase = derive2 { name="Biobase"; version="2.41.1"; sha256="0hfi88z32ma74mc2h0d8xx2m9pqwcwr77f6mfh21sqnkb5mqwsdm"; depends=[BiocGenerics]; };
+  BioSeqClass = derive2 { name="BioSeqClass"; version="1.39.2"; sha256="1j9mbp6xdnm24a1vzwq3327dhm9nglydib73nrwcw1jn0am78yqv"; depends=[Biobase Biostrings class e1071 foreign ipred klaR nnet party randomForest rpart scatterplot3d tree]; };
+  Biobase = derive2 { name="Biobase"; version="2.41.2"; sha256="11wda45crjk2v7zscrhrh0w30qdqvkxf6zcqyg7jqk833327ci0r"; depends=[BiocGenerics]; };
   BiocCaseStudies = derive2 { name="BiocCaseStudies"; version="1.43.0"; sha256="0xdn0zrd034mxzc6khqfnsp0rynfpd7zbxhmcmj5j0h83m9kyfnw"; depends=[Biobase]; };
-  BiocCheck = derive2 { name="BiocCheck"; version="1.17.15"; sha256="06wzf7j170bf9msnv61da70hlhv08k5lykwzachij1396514ypr6"; depends=[BiocInstaller biocViews codetools graph httr knitr optparse stringdist]; };
-  BiocFileCache = derive2 { name="BiocFileCache"; version="1.5.2"; sha256="170dyswpaxwg8jhw99797n5haixk7pm657dj09ydv8zjb5jaqhz0"; depends=[DBI dbplyr dplyr httr rappdirs RSQLite]; };
+  BiocCheck = derive2 { name="BiocCheck"; version="1.17.25"; sha256="1h1lwjpzmwiygfrh4gjh3mw7fjk0ync3xbvw5bl39ykgq9b1dw7h"; depends=[BiocManager biocViews codetools graph httr knitr optparse stringdist]; };
+  BiocFileCache = derive2 { name="BiocFileCache"; version="1.5.9"; sha256="1prwqr9xrl47knyx1jddw5in1casj7xyz787qqqlf7xfp8z5kqyf"; depends=[curl DBI dbplyr dplyr httr rappdirs RSQLite]; };
   BiocGenerics = derive2 { name="BiocGenerics"; version="0.27.1"; sha256="1v2vqhixnn4caanpnmd0pw7jnczfkc79wlb9c7v0kwpz9h79h023"; depends=[]; };
-  BiocInstaller = derive2 { name="BiocInstaller"; version="1.31.1"; sha256="1cprnjbymb2r1z228nyg6bbnridazw6bh6yh0mcfxq6h0cd0ig8y"; depends=[]; };
-  BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.1.6"; sha256="01g7drd8c9082kvpw5xyxmans8mksw0rm1s6rv6ml6ibzbxjrz2z"; depends=[bigrquery ComplexHeatmap dplyr DT GenomicRanges httr IRanges magrittr rjson S4Vectors shiny]; };
-  BiocParallel = derive2 { name="BiocParallel"; version="1.15.6"; sha256="1ifav2pl6szvs6a5nkkgsf7j70i496q2lsj73gb3li4krm6yslvf"; depends=[BH futile_logger snow]; };
-  BiocSklearn = derive2 { name="BiocSklearn"; version="1.3.0"; sha256="1dh0w9h81ydnnwf7dx19an7pja3n511pw16yl0bgmqr8ng51lvwn"; depends=[BBmisc HDF5Array knitr reticulate SummarizedExperiment]; };
-  BiocStyle = derive2 { name="BiocStyle"; version="2.9.3"; sha256="1ggbx5c94fr20mykkj3ghsia91c2jdi4yyhrm9jfwxdaxy9k8kfl"; depends=[bookdown knitr rmarkdown yaml]; };
+  BiocInstaller = derive2 { name="BiocInstaller"; version="1.31.3"; sha256="10b20kbp8gqfq7fsdcgfpkghndn5aw8c1cj1l67a8a5qibbfq89x"; depends=[]; };
+  BiocNeighbors = derive2 { name="BiocNeighbors"; version="0.99.22"; sha256="006map9pk5q4qk2zardgxgirlil4hhvw7vjs4js426qrxqqmhlxn"; depends=[BiocParallel Rcpp RcppAnnoy S4Vectors]; };
+  BiocOncoTK = derive2 { name="BiocOncoTK"; version="1.1.22"; sha256="10dnfzxhhvnmkcpdrzwv8810ss3yljfbq0lswa1149ndqyanhdvj"; depends=[bigrquery ComplexHeatmap DBI dplyr DT GenomicFeatures GenomicRanges ggplot2 httr IRanges magrittr rjson S4Vectors shiny SummarizedExperiment]; };
+  BiocParallel = derive2 { name="BiocParallel"; version="1.15.15"; sha256="0iqgcmgq1jzayalkym2s1zvblfrwvgp2rc7v09a6mm0hzgbxvh9y"; depends=[BH futile_logger snow]; };
+  BiocPkgTools = derive2 { name="BiocPkgTools"; version="0.99.16"; sha256="1lw8llvhfp8vpy72y3dc8dy6xiq3yl71zfry4h1ag3kxh9c4snvh"; depends=[BiocManager dplyr DT htmltools htmlwidgets httr igraph jsonlite readr rex rvest stringr tibble tidyr xml2]; };
+  BiocSklearn = derive2 { name="BiocSklearn"; version="1.3.2"; sha256="0zdakw0yrjkxvspc2sb0z70ipx7jrqcnf0br80nrkvg5sxkm5nd0"; depends=[BBmisc knitr reticulate SummarizedExperiment]; };
+  BiocStyle = derive2 { name="BiocStyle"; version="2.9.6"; sha256="1b123p3id4ljqcg3xj9lr5x05k1wa67gcl5v2bfi7nv8i6221bn3"; depends=[BiocManager bookdown knitr rmarkdown yaml]; };
   BiocVersion = derive2 { name="BiocVersion"; version="3.8.0"; sha256="1kyqzca8n7wggz6lfx7xj0i1h1s3rma15v11iycgkdka58443qqr"; depends=[]; };
-  BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.7.1"; sha256="04nxl3idhy3smyvp246vc28509i7hf5qv24zn366q012zdykywzr"; depends=[BiocStyle bookdown devtools git2r httr knitr rmarkdown rstudioapi stringr]; };
-  Biostrings = derive2 { name="Biostrings"; version="2.49.0"; sha256="015yg11649nz6w0c8a6jsrjynh047phixssziid64rsff0gf13fv"; depends=[BiocGenerics IRanges S4Vectors XVector]; };
-  BitSeq = derive2 { name="BitSeq"; version="1.25.0"; sha256="0ffqwdd5zjwcd819h3rg554c2drvi05l40ffg30p380azk0xkksp"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; };
+  BiocWorkflowTools = derive2 { name="BiocWorkflowTools"; version="1.7.5"; sha256="1k39zcfdwzddrfaakh3nchwc3xlq63x2dzybj7xj0xhjj14klyr1"; depends=[BiocStyle bookdown devtools git2r httr knitr rmarkdown rstudioapi stringr]; };
+  Biostrings = derive2 { name="Biostrings"; version="2.49.2"; sha256="0fm0vfi5s7d0xzwanq5rrdh0fp394qnd7jcmlsib6naqjch0zqaf"; depends=[BiocGenerics IRanges S4Vectors XVector]; };
+  BitSeq = derive2 { name="BitSeq"; version="1.25.2"; sha256="05vkx8wr53qfsyjcmfp31768qycmrcbanqfwh1x0l7456v0hmbcv"; depends=[IRanges Rsamtools S4Vectors zlibbioc]; };
   BrainStars = derive2 { name="BrainStars"; version="1.25.0"; sha256="0svlrnd131m2lrpafxcpzbjqj3pvzcsi6azk1f4l2f21yimmx2iq"; depends=[Biobase RCurl RJSONIO]; };
-  BridgeDbR = derive2 { name="BridgeDbR"; version="1.15.1"; sha256="0fd6v87qhv7mjmsw5xs6r3bs52h1axm150jp6vng4ph20jq8gicg"; depends=[RCurl rJava]; };
+  BridgeDbR = derive2 { name="BridgeDbR"; version="1.15.2"; sha256="1rmdyh16qkhqad0xdhqi2vxzi1ga3gmxfl81nqnb5pm1vp0rr4ns"; depends=[RCurl rJava]; };
   BrowserViz = derive2 { name="BrowserViz"; version="2.3.0"; sha256="0f4hayj2iinfqiwpl53nmnw0cfv9p6sz25ggwpz1pyib24n2n9b6"; depends=[BiocGenerics httpuv jsonlite]; };
   BubbleTree = derive2 { name="BubbleTree"; version="2.11.0"; sha256="0a69azv8v67jfdyg9mfaf58g1v3b09brhr2fvgl2lq7d48gi0cbh"; depends=[Biobase BiocGenerics BiocStyle biovizBase dplyr e1071 GenomicRanges ggplot2 gridExtra gtable gtools IRanges limma magrittr plyr RColorBrewer WriteXLS]; };
   BufferedMatrix = derive2 { name="BufferedMatrix"; version="1.45.0"; sha256="0qr9dsdh04msxva28n37shjk4j6a4m0i5v4plkk7qpvb6ccbvrf8"; depends=[]; };
   BufferedMatrixMethods = derive2 { name="BufferedMatrixMethods"; version="1.45.0"; sha256="1v2yh5pvjc3x25nq6cdqazm1x80ir2qz4jlmssgd31n1bz8r4x48"; depends=[BufferedMatrix]; };
-  CAFE = derive2 { name="CAFE"; version="1.17.0"; sha256="1rgb3wk41q1079i959fjr81jwqd8r3rj0n781hfxbn9b5kia5inq"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; };
-  CAGEfightR = derive2 { name="CAGEfightR"; version="1.1.0"; sha256="09hf2xla5dl9gh59aa024z23j5lnqdrnamf34fw0r2p394qfz9gz"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges grr Gviz IRanges Matrix Matrix_utils pryr rtracklayer S4Vectors SummarizedExperiment]; };
+  CAFE = derive2 { name="CAFE"; version="1.17.1"; sha256="057pw96g13h5sak0scqyn2qsfm3dqz7qmqrasjf4vnp2zz059blp"; depends=[affy annotate Biobase biovizBase GenomicRanges ggbio ggplot2 gridExtra IRanges]; };
+  CAGEfightR = derive2 { name="CAGEfightR"; version="1.1.5"; sha256="0604b35q82x6brwmg31ks3k77r9f287fr4azgl0bcphj71g9ijc3"; depends=[assertthat BiocGenerics BiocParallel GenomeInfoDb GenomicFeatures GenomicFiles GenomicInteractions GenomicRanges grr Gviz InteractionSet IRanges Matrix Matrix_utils pryr rtracklayer S4Vectors SummarizedExperiment]; };
+  CAGEr = derive2 { name="CAGEr"; version="1.23.5"; sha256="181vj5kmny36vdvyzvjpxvj7n0q35cq1nv28ph5v6i5xf6ymyj47"; depends=[beanplot BiocGenerics BiocParallel BSgenome data_table DelayedArray formula_tools GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges KernSmooth memoise MultiAssayExperiment plyr reshape Rsamtools rtracklayer S4Vectors som stringdist stringi SummarizedExperiment vegan VGAM]; };
   CALIB = derive2 { name="CALIB"; version="1.47.0"; sha256="1j486knj1l7chda7gdlkkzrrs7vwi39brzkshj1zcsn87r9j1j09"; depends=[limma]; };
   CAMERA = derive2 { name="CAMERA"; version="1.37.0"; sha256="0n0xvhcy3y84cq6q45ms56z4nrs6q762iqgxp266kpl93z16rw4v"; depends=[Biobase graph Hmisc igraph RBGL xcms]; };
-  CAMTHC = derive2 { name="CAMTHC"; version="0.99.6"; sha256="02gv6vqahyy7fqy0vihqsvd811d65znfjz5jmshn03qp27av11wk"; depends=[apcluster Biobase BiocParallel corpcor DMwR geometry NMF pcaPP rJava SummarizedExperiment]; };
-  CATALYST = derive2 { name="CATALYST"; version="1.5.3"; sha256="1b2gfqzb9bp4k830lyn9d87xhzcdqb2vrykihp36r96gj1g6hdg4"; depends=[Biobase circlize ComplexHeatmap ConsensusClusterPlus dplyr drc DT flowCore FlowSOM ggplot2 ggrepel gridExtra htmltools limma magrittr matrixStats nnls plotly RColorBrewer reshape2 Rtsne S4Vectors scales shiny shinyBS shinydashboard shinyjs SummarizedExperiment tidyr]; };
+  CAMTHC = derive2 { name="CAMTHC"; version="0.99.7"; sha256="1m2qpf3ssn7h7qj96021kbg3h8sfkbggq4dfxd4xz3px8vra5q82"; depends=[apcluster Biobase BiocParallel corpcor DMwR geometry NMF pcaPP rJava SummarizedExperiment]; };
+  CATALYST = derive2 { name="CATALYST"; version="1.5.9"; sha256="1xxa2sv7a75wr2py7ah8lwqhgrbbic25cq9lf3gb73iaid994fy9"; depends=[Biobase circlize ComplexHeatmap ConsensusClusterPlus dplyr drc DT flowCore FlowSOM ggplot2 ggrepel ggridges gridExtra htmltools limma magrittr Matrix matrixStats nnls plotly RColorBrewer reshape2 Rtsne S4Vectors scales shiny shinyBS shinydashboard shinyjs SummarizedExperiment tidyr]; };
   CAnD = derive2 { name="CAnD"; version="1.13.0"; sha256="07ypm7zz4hf64q478b7s2q46m3imcs0kjc77gkwxky3ymsvid07y"; depends=[ggplot2 reshape]; };
   CCPROMISE = derive2 { name="CCPROMISE"; version="1.7.0"; sha256="1yb8idgdka7psnwa7w94lsld8ghphhdz8kcyvp1na6l88lyc2iyi"; depends=[Biobase CCP GSEABase PROMISE]; };
-  CEMiTool = derive2 { name="CEMiTool"; version="1.5.0"; sha256="0h45vf64fg0pkh73k2wplfi26w3j4rnh7gyfnx9ia5bkm0z7l2fj"; depends=[clusterProfiler data_table DT fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gRbase gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; };
+  CEMiTool = derive2 { name="CEMiTool"; version="1.5.1"; sha256="1jvnpinmyjcpss3wm7kchdksjc5a5a64vdymj9ada38q3j9ni3fd"; depends=[clusterProfiler data_table DT fgsea ggdendro ggplot2 ggpmisc ggrepel ggthemes gRbase gridExtra gtable htmltools igraph intergraph knitr matrixStats network pracma rmarkdown scales sna stringr WGCNA]; };
   CFAssay = derive2 { name="CFAssay"; version="1.15.0"; sha256="06xq5rwbbgxknymn061ck1vyqlb8l715cpf7k40w3l4v95h02jiz"; depends=[]; };
   CGEN = derive2 { name="CGEN"; version="3.17.0"; sha256="1i31ckwfw6nx0fpfg2g8zq83r6zykvkxfrqkib9kj4wvxx24kvcx"; depends=[mvtnorm survival]; };
-  CGHbase = derive2 { name="CGHbase"; version="1.41.0"; sha256="0yvg2jjqs98lrrybpygc77npfj27h5mkdrh3y5mfd5s6jzvyc8pz"; depends=[Biobase marray]; };
+  CGHbase = derive2 { name="CGHbase"; version="1.41.2"; sha256="1ncy4lxvzpbs3nrwdyk56scmirgi2a3byi6dcja35syqpw2hdqip"; depends=[Biobase marray]; };
   CGHcall = derive2 { name="CGHcall"; version="2.43.0"; sha256="1r8df0xvnhzwhbg1l1wp474f85j6l1g2ivvzmqxcqr5va1clz6g9"; depends=[Biobase CGHbase DNAcopy impute snowfall]; };
   CGHnormaliter = derive2 { name="CGHnormaliter"; version="1.35.0"; sha256="0bas6wmdw9h8ablm85ggbb776nfxrf4lpfvv5rkahd10b35y3x4b"; depends=[Biobase CGHbase CGHcall]; };
   CGHregions = derive2 { name="CGHregions"; version="1.39.0"; sha256="0r3gvrinr7f5qn89v6rs5bxx4sjalsjl0f2cf6vzbzgnmdysarns"; depends=[Biobase CGHbase]; };
   CHARGE = derive2 { name="CHARGE"; version="1.1.0"; sha256="05zqkiqnc82bmb580f16v6d02kfq55sdrm0nxk86h5kp1cs8fryk"; depends=[cluster diptest factoextra FactoMineR GenomicRanges IRanges matrixStats modes plyr SummarizedExperiment]; };
-  CHRONOS = derive2 { name="CHRONOS"; version="1.9.0"; sha256="17zxbbdy1ibsj4991iazm6rny2x4xx7rzknkc6z348fzxk2m7g0x"; depends=[biomaRt circlize doParallel foreach graph openxlsx RBGL RCurl XML]; };
-  CINdex = derive2 { name="CINdex"; version="1.9.0"; sha256="1rixd0fylffc77hlc7cig7viwdhdy9r68cb3qba16sd5ywbg74gs"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; };
+  CHRONOS = derive2 { name="CHRONOS"; version="1.9.2"; sha256="01r3zd0vq4qp40sxvcp7h23713addck5d463b3vyimz7y1x07cqv"; depends=[biomaRt circlize doParallel foreach graph openxlsx RBGL RCurl XML]; };
+  CINdex = derive2 { name="CINdex"; version="1.9.1"; sha256="1g24rbbhpq90c6cqjx96pxz4vlj3kyxvc9ad3hibbkljr705rs77"; depends=[bitops dplyr GenomeInfoDb GenomicRanges gplots gridExtra IRanges png S4Vectors som stringr]; };
   CMA = derive2 { name="CMA"; version="1.39.0"; sha256="05yx2rwnrzdsgbyv86iyy17qiz6sy91bl6y3qf29aid3yndawc1s"; depends=[Biobase]; };
   CNAnorm = derive2 { name="CNAnorm"; version="1.27.0"; sha256="152cwha5mg66vc1ax6k2mwnahwj0cgcs3khii747y3xxn4p8m0z5"; depends=[DNAcopy]; };
-  CNEr = derive2 { name="CNEr"; version="1.17.3"; sha256="0gf354j2vynrjl3afbifqkd276q2qz2ywwc7661gqxcjz26jirxq"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; };
-  CNORdt = derive2 { name="CNORdt"; version="1.23.0"; sha256="14iadllrhjc1jp4njlr88bhjyb84f3gnbwjzld4n5v8s8ra8xj3a"; depends=[abind CellNOptR]; };
-  CNORfeeder = derive2 { name="CNORfeeder"; version="1.21.0"; sha256="1l1ij3r0rdywm0k47iy66v3sy0i23pr8zly1blyzpbxaqhmks3h1"; depends=[CellNOptR graph]; };
-  CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.23.0"; sha256="1z1fs64kd575hmmzxa7hx0lxkvd93mzdygw3h4g1sa2fyr9xycfb"; depends=[CellNOptR nloptr]; };
-  CNORode = derive2 { name="CNORode"; version="1.23.0"; sha256="1r8sv5rdfpc1qjhdmz05p6gny03r1rxzayiwwbkh0xj6iwswbqdz"; depends=[CellNOptR genalg]; };
+  CNEr = derive2 { name="CNEr"; version="1.17.4"; sha256="1pyv4j04ls6l5b1y80rrwjygyp2bii8psxvswyb70flpi18gs0jp"; depends=[annotate BiocGenerics Biostrings DBI GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 GO_db IRanges KEGGREST poweRlaw R_utils readr reshape2 RSQLite rtracklayer S4Vectors XVector]; };
+  CNORdt = derive2 { name="CNORdt"; version="1.23.1"; sha256="044sgjrziy70b4xdlyl56y90p5cddcp5iwfbfcwbzfpz9hbqas4l"; depends=[abind CellNOptR]; };
+  CNORfeeder = derive2 { name="CNORfeeder"; version="1.21.1"; sha256="1dvwj9q37hx6jrvzvlnkzqs3gl7abhm5b9v4xghp8ak00cwx19n6"; depends=[CellNOptR graph]; };
+  CNORfuzzy = derive2 { name="CNORfuzzy"; version="1.23.1"; sha256="13dn4lnm5z0j817hxp513yas96918nvk363bwqy4gd6aps5nhi6k"; depends=[CellNOptR nloptr]; };
+  CNORode = derive2 { name="CNORode"; version="1.23.1"; sha256="0f5lfyfvch8bp0prl5q3i8zmj0dbw50v6i48padgq3ajyszp86dx"; depends=[CellNOptR genalg]; };
+  CNPBayes = derive2 { name="CNPBayes"; version="1.11.8"; sha256="007r98f177iw6qbsrz33pa6jsr236j45pdm6h4alg7c813blhiq3"; depends=[BiocGenerics coda combinat dplyr GenomeInfoDb GenomicRanges ggplot2 gtools IRanges magrittr matrixStats mclust purrr RColorBrewer Rcpp reshape2 S4Vectors scales SummarizedExperiment tibble tidyr]; };
   CNTools = derive2 { name="CNTools"; version="1.37.0"; sha256="1hzdyjkbwv5iwapkf7a04r55gi1m0bg2ckjkmj4v94kfc5031nwc"; depends=[genefilter]; };
-  CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.13.0"; sha256="1pjmrdxg56gjwzbzvs38pdziymhsny9wnj4f5xqkmnkw6ps7v0m1"; depends=[exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; };
+  CNVPanelizer = derive2 { name="CNVPanelizer"; version="1.13.2"; sha256="0mzssf1w9yal8z9lg6b6wjhr3wgs7r03k2rsdi9baiwaiwvqjca5"; depends=[exomeCopy foreach GenomeInfoDb GenomicRanges ggplot2 gplots IRanges NOISeq openxlsx plyr reshape2 Rsamtools S4Vectors shiny shinyFiles shinyjs stringr testthat]; };
   CNVrd2 = derive2 { name="CNVrd2"; version="1.19.0"; sha256="0xdkckwys2963ylj2mid10k9dwwwmsks29pdp5z4266z0z3r9x9b"; depends=[DNAcopy ggplot2 gridExtra IRanges rjags Rsamtools VariantAnnotation]; };
   CNVtools = derive2 { name="CNVtools"; version="1.75.0"; sha256="1x70y389szy3b6vimlpzjsqdg4kykmx01wfw8aks5hxq9z23vaik"; depends=[survival]; };
-  CODEX = derive2 { name="CODEX"; version="1.13.0"; sha256="1zfg0ka7cvrd1pp4qv8a25crkq78v0qm73z8x4246rlyzvnnxds5"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; };
-  COHCAP = derive2 { name="COHCAP"; version="1.27.1"; sha256="0a241dbwj6q0x7r3af252dvdv9i07vbslz0nc532gwv8r56426pw"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; };
-  COMPASS = derive2 { name="COMPASS"; version="1.19.0"; sha256="025gd220j77l4w55k9kmpr3438ffbjhq93ivc124jq3yr7qmpfgc"; depends=[abind BiocStyle clue data_table dplyr knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; };
-  CONFESS = derive2 { name="CONFESS"; version="1.9.0"; sha256="03rdyklmk31pzg4q6gn8j501gx5hh7awbx4xbvgnw0hzk8753lbb"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; };
+  COCOA = derive2 { name="COCOA"; version="0.99.8"; sha256="07r7lv3kaf4lq4mgbgp5yym373mm949qs6wiwc5zvkkaka3rm6zx"; depends=[Biobase BiocGenerics ComplexHeatmap data_table GenomicRanges ggplot2 IRanges MIRA S4Vectors tidyr]; };
+  CODEX = derive2 { name="CODEX"; version="1.13.1"; sha256="0mrr40660358n2f31phzmagwfg7fxdmmyhmcaqf17cdcyp9cnslb"; depends=[Biostrings BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb IRanges Rsamtools S4Vectors]; };
+  COHCAP = derive2 { name="COHCAP"; version="1.27.5"; sha256="13b7ms1j1p6qfyvipzipm2qnr50rhzf0hm9h6h8g6rwvkxxqbvci"; depends=[BH COHCAPanno gplots RColorBrewer Rcpp RcppArmadillo WriteXLS]; };
+  COMPASS = derive2 { name="COMPASS"; version="1.19.4"; sha256="061jy33qvsvadi3a8ccwqh02nmnhhs8khy7vixf9akndl2jqbzqz"; depends=[abind BiocStyle clue data_table dplyr knitr magrittr pdist plyr RColorBrewer Rcpp reshape2 rlang rmarkdown scales tidyr]; };
+  CONFESS = derive2 { name="CONFESS"; version="1.9.1"; sha256="0v334w2252mvc4qmpz5wnwz7xk99nj2izj61qhaafiaqq9wk3f5i"; depends=[changepoint cluster contrast data_table EBImage ecp flexmix flowClust flowCore flowMeans flowMerge flowPeaks foreach ggplot2 limma MASS moments outliers plotrix raster readbitmap reshape2 SamSPECTRAL waveslim wavethresh zoo]; };
   CORREP = derive2 { name="CORREP"; version="1.47.0"; sha256="061hyv2jxhjpwycv9c0s0881nsq1z3pm0jcn9simdha55hzb20hs"; depends=[e1071]; };
   COSNet = derive2 { name="COSNet"; version="1.15.0"; sha256="0irkzh1rm430y5a67rx0rzc4bgb9zg9jyh768bgl1mcf3hjdqsgl"; depends=[]; };
-  CRISPRseek = derive2 { name="CRISPRseek"; version="1.21.0"; sha256="1jnwr3jy0ak9nv4x6n9n5zfggmrr849y4rw8qq819ig6a3swafqz"; depends=[BiocGenerics BiocParallel Biostrings BSgenome data_table hash IRanges S4Vectors seqinr]; };
+  CRISPRseek = derive2 { name="CRISPRseek"; version="1.21.4"; sha256="1ck8pqwm2g4fwibd5lbj9r04ryqhw93r7rn1djp7mfxp829asfl7"; depends=[BiocGenerics BiocParallel Biostrings BSgenome data_table hash IRanges S4Vectors seqinr]; };
   CRImage = derive2 { name="CRImage"; version="1.29.0"; sha256="1b5giadnwi8h4x8bmkw5064grhaijmnkidbbd8fi2pc1pz406fli"; depends=[aCGH DNAcopy e1071 EBImage foreach MASS sgeostat]; };
   CSAR = derive2 { name="CSAR"; version="1.33.0"; sha256="1i2amxpka75l91bhvfdwzs85hcl9c11rz82l2xsjybj0ff3v0m91"; depends=[GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
   CSSP = derive2 { name="CSSP"; version="1.19.0"; sha256="1ic79b6cg68ylwj9r7ak21m1fbwrys3kwcllmhpdf8v0fldk6qld"; depends=[]; };
-  CTDquerier = derive2 { name="CTDquerier"; version="1.1.0"; sha256="00y2cm7sbzkb7q8xn4jqh1478v6jhjrcmhgc2y3h13abb0v93xl0"; depends=[BiocFileCache ggplot2 gridExtra igraph rappdirs RCurl S4Vectors stringdist stringr]; };
-  CVE = derive2 { name="CVE"; version="1.7.12"; sha256="0v39bkic6wxhh2asj0sf1cb0amvrli56ni5dxy6ilnka8437ywyw"; depends=[ape ConsensusClusterPlus ggplot2 gplots jsonlite plyr RColorBrewer shiny tidyverse WGCNA]; };
+  CTDquerier = derive2 { name="CTDquerier"; version="1.1.2"; sha256="1sy46i32ylyny88992x6l9csn9aji7vjki6i47wdp6a0zi2s9q23"; depends=[BiocFileCache ggplot2 gridExtra igraph rappdirs RCurl S4Vectors stringdist stringr]; };
+  CVE = derive2 { name="CVE"; version="1.7.13"; sha256="1sw0kiivd411hbr3jhvdpgl8b56f7w8vlxykyjgr47dbyn6nwbcd"; depends=[ape ConsensusClusterPlus ggplot2 gplots jsonlite plyr RColorBrewer shiny tidyverse WGCNA]; };
   CancerInSilico = derive2 { name="CancerInSilico"; version="2.1.0"; sha256="1rpphiy5bda3gpfscgyzci5dynyqdia5nb720pdjzxbz9xkr87f5"; depends=[BH Rcpp]; };
   CancerMutationAnalysis = derive2 { name="CancerMutationAnalysis"; version="1.23.0"; sha256="1dxw34fbr25q20k7z9isl4r0w5gz8jj1a0hd9kb4nqhm1yzilpai"; depends=[AnnotationDbi limma qvalue]; };
   CancerSubtypes = derive2 { name="CancerSubtypes"; version="1.7.0"; sha256="09c7k5789i4afsgk1vxbz036s5gyxlnwmmwwpcgq0v4y920s37w3"; depends=[cluster ConsensusClusterPlus iCluster impute limma NMF sigclust SNFtool survival]; };
-  Cardinal = derive2 { name="Cardinal"; version="1.13.0"; sha256="0iq9b3357c0drhy0yh1rk71z9bh7g6dxh4wwjvwig1bnd3wy506d"; depends=[Biobase BiocGenerics irlba lattice matter ProtGenerics signal sp]; };
-  Category = derive2 { name="Category"; version="2.47.0"; sha256="0nrac7r5f13byc68h38ii1jld3m7w63qr340mnaylc2vc2ics6jz"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; };
+  Cardinal = derive2 { name="Cardinal"; version="1.99.1"; sha256="0pd5b3bvgcpylml6fkw5zr6kalzjqzkdyygrj2jcqyr73ln2hvxg"; depends=[Biobase BiocGenerics BiocParallel dplyr EBImage irlba lattice magrittr matter ProtGenerics S4Vectors signal sp]; };
+  Category = derive2 { name="Category"; version="2.47.1"; sha256="1lg7adkrj3gsvbzkwdvrrpqv911p7ysqwimgj8silrk1vb21pghv"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI genefilter graph GSEABase Matrix RBGL]; };
   CausalR = derive2 { name="CausalR"; version="1.13.0"; sha256="0npjg5zg4ckqhgjayb0rxvaaggbd52n61bs7mba6f20dnq1x0q5j"; depends=[igraph]; };
-  CellMapper = derive2 { name="CellMapper"; version="1.7.0"; sha256="0jxanbmhi4004kilhdd19fp12yyjx8dcy91iify4ivrhp9c4xwr0"; depends=[S4Vectors]; };
-  CellNOptR = derive2 { name="CellNOptR"; version="1.27.0"; sha256="0ig7g50lmy8z3b00adkanmr7nz56nf35ayfbxby2phpxirqf15wj"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; };
-  CellScore = derive2 { name="CellScore"; version="1.1.0"; sha256="11hsyz15b8kfmb8vjgpwy5hgkmcizlv4ygnw0ffmkvpnjmlib4rm"; depends=[Biobase gplots lsa RColorBrewer squash]; };
-  CellTrails = derive2 { name="CellTrails"; version="0.99.12"; sha256="10fn3vkkvjva6np8nkb39dxwkybac567rc0xxn09wlnxpqmfh8i7"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; };
-  CexoR = derive2 { name="CexoR"; version="1.19.1"; sha256="1yga6kc562ginzzb0cq8icyjkbj599j9q4hxzgd6hhf5590nfjfy"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; };
-  ChIC = derive2 { name="ChIC"; version="1.1.0"; sha256="1nh1dcqzf3m5gpkgblf7lx599c8dxm7gk53d7y12a7mdlrnzsh5j"; depends=[BiocGenerics caret caTools ChIC_data GenomicRanges IRanges S4Vectors spp]; };
+  CellMapper = derive2 { name="CellMapper"; version="1.7.1"; sha256="18w6mxmx58rh93alrxfvqnkg3m28wrycvm5pcm5zr7kvckgd9zlr"; depends=[S4Vectors]; };
+  CellNOptR = derive2 { name="CellNOptR"; version="1.27.1"; sha256="1rbn2dbch4mf7ckgbh16zv85imz3wrv97gc618m3q0swp03589ay"; depends=[ggplot2 graph hash RBGL RCurl Rgraphviz XML]; };
+  CellScore = derive2 { name="CellScore"; version="1.1.1"; sha256="1fwnzggm0kldackdcr8ssb0g9448gkddv632aipp6ksqw609qn52"; depends=[Biobase gplots lsa RColorBrewer squash]; };
+  CellTrails = derive2 { name="CellTrails"; version="0.99.15"; sha256="0pg0wqcfwwq7y8xqm0dcpkmn7j1vd3c0ivcyij11li2znmhamsm9"; depends=[Biobase BiocGenerics cba dendextend dtw EnvStats ggplot2 ggrepel igraph maptree mgcv reshape2 Rtsne SingleCellExperiment SummarizedExperiment]; };
+  CexoR = derive2 { name="CexoR"; version="1.19.3"; sha256="1cia3bhplk559pz1znmqnfxy3zpzbg55489gadankpz3kz7n73xd"; depends=[genomation GenomeInfoDb GenomicRanges idr IRanges RColorBrewer Rsamtools rtracklayer S4Vectors]; };
+  ChAMP = derive2 { name="ChAMP"; version="2.11.5"; sha256="1m6br9h75j9c659a4zhadghwf7aisc3sm2mz9s67fy3hlncmlska"; depends=[bumphunter ChAMPdata combinat dendextend DMRcate DNAcopy doParallel FEM GenomicRanges globaltest goseq Hmisc Illumina450ProbeVariants_db IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest illuminaio impute isva limma marray matrixStats minfi missMethyl plotly plyr preprocessCore prettydoc quadprog qvalue RColorBrewer rmarkdown RPMM shiny shinythemes sva wateRmelon]; };
+  ChIC = derive2 { name="ChIC"; version="1.1.09"; sha256="1730yssk9ig84mbzbvs0rhszscp00sbqqhhvl559gfacajs5gv85"; depends=[BiocGenerics caret caTools ChIC_data GenomicRanges IRanges progress S4Vectors spp]; };
   ChIPComp = derive2 { name="ChIPComp"; version="1.11.0"; sha256="0lia22xjj1w8m7hwpfcyaf6cldk05f78v93x3p947xdrkymx6lgc"; depends=[BiocGenerics BSgenome_Hsapiens_UCSC_hg19 BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicRanges IRanges limma Rsamtools rtracklayer S4Vectors]; };
-  ChIPQC = derive2 { name="ChIPQC"; version="1.17.0"; sha256="0d68nizvlp9gx9s33s5ll4pmrp7rhpjd3xqc8pngc3zvwa4sjg96"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; };
+  ChIPQC = derive2 { name="ChIPQC"; version="1.17.1"; sha256="0cpii7sxp1vab5wnnm00kifqnmxxr8hc4rnb8l4wmk5ib4ijqpra"; depends=[Biobase BiocGenerics BiocParallel chipseq DiffBind GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gtools IRanges Nozzle_R1 reshape2 Rsamtools S4Vectors TxDb_Celegans_UCSC_ce6_ensGene TxDb_Dmelanogaster_UCSC_dm3_ensGene TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Mmusculus_UCSC_mm10_knownGene TxDb_Mmusculus_UCSC_mm9_knownGene TxDb_Rnorvegicus_UCSC_rn4_ensGene]; };
   ChIPSeqSpike = derive2 { name="ChIPSeqSpike"; version="1.1.0"; sha256="15w26zchxjggz8236afgykdncdzim9n3lyr4bm5p7qxzqs8aigbv"; depends=[BiocGenerics corrplot GenomicRanges ggplot2 IRanges LSD Rsamtools rtracklayer S4Vectors seqplots stringr]; };
-  ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.3.0"; sha256="08cwdrafzq4ilvck21dc49nf0mjb27vbxrb8i860pfdd77i08hz4"; depends=[Biostrings BSgenome GenomicRanges IRanges RcppRoll rtracklayer S4Vectors]; };
-  ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.5.0"; sha256="17w5qibbn4gpvmzndmh3igzbkvzljk88nkz7imld01n8wp4f0kni"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; };
-  ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.15.0"; sha256="0hck74qkrg4m9w30lag9jfv0ikh2q9d95fa73zjcbdil7n792l7k"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller biomaRt Biostrings BSgenome DBI DelayedArray ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GO_db graph idr IRanges limma matrixStats multtest RBGL regioneR Rsamtools S4Vectors seqinr SummarizedExperiment VennDiagram]; };
-  ChIPseeker = derive2 { name="ChIPseeker"; version="1.17.0"; sha256="0002vn7kw83c8lzyrdkwi5c3vpkld3xihfa8zlx6hz41221im2vb"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gridBase gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene UpSetR]; };
-  ChIPseqR = derive2 { name="ChIPseqR"; version="1.35.0"; sha256="0q5s9pzdmiv2z6cjvy24nzpqsblr2p60qrd8kdgkh8hxx6wq79f1"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; };
-  ChIPsim = derive2 { name="ChIPsim"; version="1.35.0"; sha256="1rz89zn383j8pa3g3rgabiw6zcg9h1nfbrmln4vwbbk6yk877l5l"; depends=[Biostrings IRanges ShortRead XVector]; };
-  ChemmineOB = derive2 { name="ChemmineOB"; version="1.19.0"; sha256="0w9pr4k12a8c8h69ycn231igd74a8m72v1icii11jiijl3i9hfg3"; depends=[BH BiocGenerics Rcpp zlibbioc]; };
-  ChemmineR = derive2 { name="ChemmineR"; version="3.33.1"; sha256="1dzm3cw6i3k38p9i0yzf0bcad8zqvkip434k11ppplk5ch923rzi"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra png Rcpp RCurl rjson rsvg]; };
+  ChIPXpress = derive2 { name="ChIPXpress"; version="1.25.0"; sha256="0px8vpyiay60fb2qvjax7mkijkmix41vaa34g9s6ahzp7mxxhwyz"; depends=[affy biganalytics bigmemory Biobase ChIPXpressData frma GEOquery]; };
+  ChIPanalyser = derive2 { name="ChIPanalyser"; version="1.3.7"; sha256="0lrpymicyi3fphw7vj1bcrgl00fpld7436kfffdwrmjla7m6539w"; depends=[BiocManager Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges RcppRoll ROCR rtracklayer S4Vectors]; };
+  ChIPexoQual = derive2 { name="ChIPexoQual"; version="1.5.1"; sha256="1691808rn2jw08aivd2vsys279kbzs9ndf7brlgyaxaii3lxm2hc"; depends=[BiocParallel biovizBase broom data_table dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 hexbin IRanges RColorBrewer rmarkdown Rsamtools S4Vectors scales viridis]; };
+  ChIPpeakAnno = derive2 { name="ChIPpeakAnno"; version="3.15.2"; sha256="1b5kg8vh37pslj5ckavz401pxpy1xgak9jsanfjb76wjbpyadzm0"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager biomaRt Biostrings BSgenome DBI DelayedArray ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GO_db graph idr IRanges limma matrixStats multtest RBGL regioneR Rsamtools S4Vectors seqinr SummarizedExperiment VennDiagram]; };
+  ChIPseeker = derive2 { name="ChIPseeker"; version="1.17.2"; sha256="0gnb451jh6fscpgywbclk0plfmha4zxpzpf3lq6y9kyvxk9v2cqp"; depends=[AnnotationDbi BiocGenerics boot dplyr enrichplot GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gplots gridBase gtools IRanges magrittr plotrix RColorBrewer rtracklayer S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene UpSetR]; };
+  ChIPseqR = derive2 { name="ChIPseqR"; version="1.35.2"; sha256="11pw2265qni3j20jn7kmxmw5gjf01x34vzsfnv6j4cn8k4hpl6l7"; depends=[BiocGenerics Biostrings fBasics GenomicRanges HilbertVis IRanges S4Vectors ShortRead timsac]; };
+  ChIPsim = derive2 { name="ChIPsim"; version="1.35.2"; sha256="0nrwi9xy224g9r923gwkmmcq7ld4vnfwsgafiw7i1n20vsj85gyj"; depends=[Biostrings IRanges ShortRead XVector]; };
+  ChemmineOB = derive2 { name="ChemmineOB"; version="1.19.3"; sha256="0c2xlkf1y15lqp7yibzp1wlknyf4l5wm8zwqf0s2grp3snc3zcv0"; depends=[BH BiocGenerics Rcpp zlibbioc]; };
+  ChemmineR = derive2 { name="ChemmineR"; version="3.33.5"; sha256="0ydl1hz4hjiln4kpym7kdswbn7rddafpvsanblqbivy58p8vxkhk"; depends=[base64enc BH BiocGenerics DBI digest DT ggplot2 gridExtra png Rcpp RCurl rjson rsvg]; };
   Chicago = derive2 { name="Chicago"; version="1.9.0"; sha256="0b3j250w0piasfs3jbyycy9w4snvrn7vbaq31hhj150gjvphsgzk"; depends=[data_table Delaporte Hmisc MASS matrixStats]; };
   ChromHeatMap = derive2 { name="ChromHeatMap"; version="1.35.0"; sha256="18xgngy77rj8q91bj9v8kpzqijz15ax5w9db0xiyrspvi39z4fx4"; depends=[annotate AnnotationDbi Biobase BiocGenerics GenomicRanges IRanges rtracklayer]; };
-  ClassifyR = derive2 { name="ClassifyR"; version="2.1.6"; sha256="0xnayr0w00nwmg9j6x6kl6i66l46ai734ifmgvdpgg18d6zi7zhr"; depends=[BiocParallel locfit MultiAssayExperiment plyr S4Vectors]; };
-  Clomial = derive2 { name="Clomial"; version="1.17.2"; sha256="0kl6fbgrihbz2qk7gzpdjclh9x874kb0wsk3615b21ra9qdfl3va"; depends=[matrixStats permute]; };
+  ClassifyR = derive2 { name="ClassifyR"; version="2.1.32"; sha256="1v82c9s3g7j6da528571nsw1d4yjl502zw5q7zfjdd23nz6kppzz"; depends=[BiocParallel locfit MultiAssayExperiment plyr S4Vectors]; };
+  Clomial = derive2 { name="Clomial"; version="1.17.4"; sha256="0w0qnl7ihmkgl568wimx13cc4lhpxb1ll68iwkibnihz604rcnq6"; depends=[matrixStats permute]; };
   Clonality = derive2 { name="Clonality"; version="1.29.0"; sha256="0hlrj9rl7d0wzyk6a95p68gx76m34bfgxvpz68r3qhdzi0z0lxbn"; depends=[DNAcopy]; };
   ClusterJudge = derive2 { name="ClusterJudge"; version="1.3.0"; sha256="1zc019s15skjnzjm0vb5y3z4rd5cnk1awnvwxwj062y3pzr5kp62"; depends=[httr infotheo jsonlite lattice latticeExtra]; };
-  ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.9.0"; sha256="18j2jscwgmv2hcsi00182n03rvcqyaxbazzplxx5jqrgmqqzngmz"; depends=[pracma princurve RColorBrewer scatterplot3d]; };
+  ClusterSignificance = derive2 { name="ClusterSignificance"; version="1.9.2"; sha256="13mgd8sxj65f7lv4jlbslq27zj3hsqd57fg34xkrvgvir2a7jcmp"; depends=[pracma princurve RColorBrewer scatterplot3d]; };
   CoCiteStats = derive2 { name="CoCiteStats"; version="1.53.0"; sha256="0xy1zy4951r9xpjmhia8krrc429azbfg22nqzd9p0jcqflfj2sq7"; depends=[AnnotationDbi org_Hs_eg_db]; };
-  CoGAPS = derive2 { name="CoGAPS"; version="3.1.0"; sha256="1ra3p9dqgpyfn3f4jq0jhamiiais0y2pli4qpyq3k3x510810mkd"; depends=[BH cluster doParallel foreach ggplot2 gplots RColorBrewer Rcpp reshape2 shiny]; };
-  CoRegNet = derive2 { name="CoRegNet"; version="1.19.0"; sha256="1m532i7r1bz3dg5p2h8cfgligds95v6a57kv0xzan1gn37pys9g1"; depends=[arules igraph shiny]; };
+  CoGAPS = derive2 { name="CoGAPS"; version="3.1.6"; sha256="15x5pp83i1wzzs5h9gdllzb4qffi6ciw1kf63h1x6b42sk37kzia"; depends=[BH cluster doParallel foreach ggplot2 gplots RColorBrewer Rcpp reshape2 shiny]; };
+  CoRegNet = derive2 { name="CoRegNet"; version="1.19.1"; sha256="0ywa8d80vgk222161ks0mgxi0ahswm3mil0lxgxanny8ad1vxvx2"; depends=[arules igraph shiny]; };
   CompGO = derive2 { name="CompGO"; version="1.17.0"; sha256="04f22n17b4cyv1mapimkmc913d22cpvifdznfgqgbmrkjsyygg2k"; depends=[GenomicFeatures ggplot2 pathview pcaMethods RDAVIDWebService reshape2 Rgraphviz rtracklayer TxDb_Mmusculus_UCSC_mm9_knownGene]; };
-  ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="1.19.1"; sha256="1wdbffj94jycbg95gpj8c5bdll2697v9rhqanv075373qa8f1miq"; depends=[circlize colorspace GetoptLong GlobalOptions RColorBrewer]; };
+  ComplexHeatmap = derive2 { name="ComplexHeatmap"; version="1.19.3"; sha256="1pczcx26i30izg7iwi7ljnwqzf2k8mfw09dhmgbrcvy5siv7vn03"; depends=[circlize colorspace GetoptLong GlobalOptions RColorBrewer]; };
   ConsensusClusterPlus = derive2 { name="ConsensusClusterPlus"; version="1.45.0"; sha256="1ypfclg252j9d7v78r81n14f0gsaxgzk6n1509rdv010h0xbaw2q"; depends=[ALL Biobase cluster]; };
-  CopywriteR = derive2 { name="CopywriteR"; version="2.13.0"; sha256="11gls7dh4n4kd6dijvly5r3x918ivbpyriyz0y50333vpafm4swr"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; };
+  CopywriteR = derive2 { name="CopywriteR"; version="2.13.1"; sha256="1w3raf6756lnf1fmarcwsr10808ggih71v0gzky4xcbhgy5d9dkh"; depends=[BiocParallel chipseq CopyhelpeR data_table DNAcopy futile_logger GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges matrixStats Rsamtools S4Vectors]; };
   CorMut = derive2 { name="CorMut"; version="1.23.0"; sha256="0y0sbnz3rlv98b87i7qcqv7zy1js180hmpy45fw55kmzjvd4j6vq"; depends=[igraph seqinr]; };
   Cormotif = derive2 { name="Cormotif"; version="1.27.0"; sha256="0spl1qg0p8za8w6ikiwsf4d1spx55g1b73vcbpxbipmjymwc408i"; depends=[affy limma]; };
-  CountClust = derive2 { name="CountClust"; version="1.9.0"; sha256="12f2bazvyz0xvd9a67qxwii30441nsnmxd89706h4k1ba1zgp436"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; };
+  CountClust = derive2 { name="CountClust"; version="1.9.1"; sha256="06vqcmb53h7h329kvq51gka8gzbz811wnrbi92wr9p0vy2pwm3hy"; depends=[cowplot flexmix ggplot2 gtools limma maptpx picante plyr reshape2 slam SQUAREM]; };
   CoverageView = derive2 { name="CoverageView"; version="1.19.0"; sha256="0alj0908pfih5z5zyi5szkimcm73sfsbqwpg6w594iglgyvbfbck"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors]; };
-  CrispRVariants = derive2 { name="CrispRVariants"; version="1.9.0"; sha256="18ww7xjykyrn0fh07b341pzg7zypd4hmq2adpn6m331v7v91m3dw"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; };
-  CytoDx = derive2 { name="CytoDx"; version="1.1.0"; sha256="02zh10icpc0iv0bcyayr6bcvbjsvgbq9whg7mnlqlnf8x4hx6mk2"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; };
-  CytoML = derive2 { name="CytoML"; version="1.7.7"; sha256="0qr52pq6l04w2y0dqkh3vmyyxjd3jc0yh8yvx1hxy2yglvdb9mpw"; depends=[base64enc Biobase data_table flowCore flowUtils flowWorkspace ggcyto graph jsonlite ncdfFlow openCyto plyr RBGL Rgraphviz XML]; };
-  DAPAR = derive2 { name="DAPAR"; version="1.13.0"; sha256="1qv5hgwcxpxjy5p0rbsr12wcplqvhyr2qwa1yr26ga7wqspbqg5g"; depends=[AnnotationDbi Cairo clusterProfiler cp4p DAPARdata doParallel dplyr foreach ggplot2 gplots graph highcharter imp4p impute imputeLCMD knitr lattice limma lme4 Matrix MSnbase norm openxlsx pcaMethods png preprocessCore RColorBrewer readxl reshape2 scales siggenes stringr tidyr tidyverse tmvtnorm vioplot]; };
+  CrispRVariants = derive2 { name="CrispRVariants"; version="1.9.2"; sha256="09ilj21fr59kw51msyazl3lcypla5dd0sc3z60jrr4ygs3fyw91q"; depends=[AnnotationDbi BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges reshape2 Rsamtools S4Vectors]; };
+  CytoDx = derive2 { name="CytoDx"; version="1.1.2"; sha256="1d2kdsiarfz9hpr87qq94ybiyg8cg40j6p2pryw6qnkkj43qdmgj"; depends=[doParallel dplyr flowCore glmnet rpart rpart_plot]; };
+  CytoML = derive2 { name="CytoML"; version="1.7.14"; sha256="0xflcjjzigq08xpjjsyz67v80x0qmxnrkjq9h4241f7s0vxx7pl2"; depends=[base64enc Biobase data_table flowCore flowUtils flowWorkspace ggcyto graph jsonlite ncdfFlow openCyto plyr RBGL Rgraphviz XML]; };
+  DAPAR = derive2 { name="DAPAR"; version="1.13.15"; sha256="1yxkipp01zdx5xlj479a6f2hzrhs72fh8qyk5b5nbqvbrb2jipfh"; depends=[AnnotationDbi Cairo clusterProfiler cp4p DAPARdata doParallel dplyr factoextra FactoMineR foreach ggplot2 gplots graph highcharter imp4p impute knitr lattice limma lme4 Matrix MSnbase norm openxlsx pcaMethods png preprocessCore RColorBrewer readxl reshape2 scales siggenes stringr tidyr tidyverse tmvtnorm vioplot vsn]; };
   DART = derive2 { name="DART"; version="1.29.0"; sha256="1akgln0w3xbvis0pcgjdm07jbbfsg0yn732gkvh1hzkpg26iwgfr"; depends=[igraph]; };
   DBChIP = derive2 { name="DBChIP"; version="1.25.0"; sha256="1c3s5ffbdbhsr35q5mxs1vhl3glrjfwnpng11xlrcsj9h3jpxhva"; depends=[DESeq edgeR]; };
-  DChIPRep = derive2 { name="DChIPRep"; version="1.11.0"; sha256="00r70fvr49fy4xmyyspgwiqphz96xcq9pz5c0srprrf4az71fl96"; depends=[assertthat ChIPpeakAnno DESeq2 fdrtool GenomicRanges ggplot2 plyr purrr reshape2 S4Vectors smoothmest soGGi SummarizedExperiment tidyr]; };
-  DECIPHER = derive2 { name="DECIPHER"; version="2.9.1"; sha256="1b09amzwvchh56wy0bs2f6hgjrsa09hdpqql6ywkj7n7abg022vf"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; };
-  DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.1.0"; sha256="0swqxmyqlh05albirm8n32wl31s4gbv45qn9c5mpdpvr6zsldylg"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; };
+  DChIPRep = derive2 { name="DChIPRep"; version="1.11.1"; sha256="1kp0lsqlrnr815rp0g7jcppbrp1h62pa60j1jgav78bwh51l4dpq"; depends=[assertthat ChIPpeakAnno DESeq2 fdrtool GenomicRanges ggplot2 plyr purrr reshape2 S4Vectors smoothmest soGGi SummarizedExperiment tidyr]; };
+  DECIPHER = derive2 { name="DECIPHER"; version="2.9.2"; sha256="0lvg0kcv6rryb39aini5s9b4aacbld67z7427w9gvpsj7zcapgvz"; depends=[Biostrings DBI IRanges RSQLite S4Vectors XVector]; };
+  DEComplexDisease = derive2 { name="DEComplexDisease"; version="1.1.1"; sha256="007wgj3kpdk7nvx8qribm6vqfca4vp7n1ih8y866xlqgdcr5ad61"; depends=[BiocParallel ComplexHeatmap DESeq2 edgeR Rcpp SummarizedExperiment]; };
   DEDS = derive2 { name="DEDS"; version="1.55.0"; sha256="0823ycm0j30dh1pbpxbcfwqglpff72675cr4h18rk0fx0v742vhy"; depends=[]; };
-  DEFormats = derive2 { name="DEFormats"; version="1.9.0"; sha256="1vd3dnc38mmgkw07qbazra8928c6r8wcxcizq05bwgjqhwfjdyxs"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; };
-  DEGraph = derive2 { name="DEGraph"; version="1.33.0"; sha256="1xmawr15c8nxw8hgh3ijq2cp6ynkb8xana6zfidcibwmgfs7zlw6"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; };
-  DEGreport = derive2 { name="DEGreport"; version="1.17.2"; sha256="1zf1fryw0h1kh8hwi0v6xkvr22gi7qbynn1j2fmx9n5n2246n3ad"; depends=[Biobase BiocGenerics circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; };
-  DEGseq = derive2 { name="DEGseq"; version="1.35.0"; sha256="0kynaqbzlsldxjkqxd396xs5gfzmkvrkxhn14ihv651iviarwb8b"; depends=[qvalue samr]; };
-  DEP = derive2 { name="DEP"; version="1.3.2"; sha256="0yy70j6ng0cdg16s3nmly2447857h0ks71q16c7vp2xgxjlqbipd"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; };
+  DEFormats = derive2 { name="DEFormats"; version="1.9.1"; sha256="1hcxamc82wyp8xgrx4mxhw3q15g32y8z66qgv1gbm7h17wykssih"; depends=[checkmate data_table DESeq2 edgeR GenomicRanges S4Vectors SummarizedExperiment]; };
+  DEGraph = derive2 { name="DEGraph"; version="1.33.1"; sha256="19fcsjz6bgc1bvnympvq0ms5d7mvj2681jbnq5inrr4pxq2qz0p0"; depends=[graph KEGGgraph lattice mvtnorm NCIgraph R_methodsS3 R_utils RBGL Rgraphviz rrcov]; };
+  DEGreport = derive2 { name="DEGreport"; version="1.17.8"; sha256="02z93g0fy594dhj7dk16fglw4jakyb44zcn22k1c64d8wvhq8rfa"; depends=[Biobase BiocGenerics broom circlize cluster ComplexHeatmap ConsensusClusterPlus cowplot DESeq2 dplyr edgeR ggdendro ggplot2 ggrepel knitr lasso2 logging magrittr Nozzle_R1 psych RColorBrewer reshape rlang S4Vectors scales stringr SummarizedExperiment tibble tidyr]; };
+  DEGseq = derive2 { name="DEGseq"; version="1.35.1"; sha256="1mb9chwazmsj9j4dz92kw2mhc3b5lx5v2y3xgdcc9s4bjmb21xrz"; depends=[qvalue]; };
+  DEP = derive2 { name="DEP"; version="1.3.3"; sha256="0wmzinv369svfwfmgv2gsz471bnh5vz77p5w1q4ycgd6lj5l2ckn"; depends=[assertthat circlize cluster ComplexHeatmap dplyr DT fdrtool ggplot2 ggrepel gridExtra imputeLCMD limma MSnbase purrr RColorBrewer readr rmarkdown shiny shinydashboard SummarizedExperiment tibble tidyr vsn]; };
   DEScan2 = derive2 { name="DEScan2"; version="1.1.2"; sha256="04xla8cr3f3r1dwvahs55l93bzlnds04c42kx93lgyn5r2ksqr8n"; depends=[BiocGenerics BiocParallel ChIPpeakAnno data_table DelayedArray GenomeInfoDb GenomicAlignments GenomicRanges glue IRanges plyr Rcpp RcppArmadillo rtracklayer S4Vectors SummarizedExperiment]; };
   DESeq = derive2 { name="DESeq"; version="1.33.0"; sha256="1h56v3d1kj8inh3xy08k6kfc31czyq9a2zwy1v2kibcaa79z4zrn"; depends=[Biobase BiocGenerics genefilter geneplotter lattice locfit MASS RColorBrewer]; };
-  DESeq2 = derive2 { name="DESeq2"; version="1.21.6"; sha256="02libh2lsna118na2lbc8hmd11dm9lia6gcnb59jqp69w9mmmpyk"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; };
-  DEXSeq = derive2 { name="DEXSeq"; version="1.27.0"; sha256="113dircdkngrrsb50mk3pp4x4nis2b27j020blxra3i9n3g2zrq7"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; };
-  DEsingle = derive2 { name="DEsingle"; version="1.1.4"; sha256="0nzm9nw9rqmk13vz7vyqjiy096m1vka51pqrs830yyf4vq69g457"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; };
-  DEsubs = derive2 { name="DEsubs"; version="1.7.1"; sha256="0wj89308s4rq2d1i1f6y79wj2fpk0gk2gzpfam0x5pfppzz83cx8"; depends=[circlize DESeq DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL samr]; };
+  DESeq2 = derive2 { name="DESeq2"; version="1.21.25"; sha256="1ll8fdpqyml171vsxsnggsx09963jz15rivvn32xihwas9dxwksv"; depends=[Biobase BiocGenerics BiocParallel genefilter geneplotter GenomicRanges ggplot2 Hmisc IRanges locfit Rcpp RcppArmadillo S4Vectors SummarizedExperiment]; };
+  DEXSeq = derive2 { name="DEXSeq"; version="1.27.1"; sha256="0jppj3yl1jibxj2ci07sf4lbbx9rbjlx172ynp2vg3ic7j7y6z61"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel biomaRt DESeq2 genefilter geneplotter GenomicRanges hwriter IRanges RColorBrewer Rsamtools S4Vectors statmod stringr SummarizedExperiment]; };
+  DEqMS = derive2 { name="DEqMS"; version="0.99.44"; sha256="01754m7rwrc1in1ls8vd0c94p2p4jyspb0nwx42scb8kjpnmcbdq"; depends=[ggplot2 limma]; };
+  DEsingle = derive2 { name="DEsingle"; version="1.1.5"; sha256="0biail9qfp0sp7f2sp4mx55ajba2waqsfllx2sndjls0673pv215"; depends=[bbmle BiocParallel gamlss MASS Matrix maxLik pscl VGAM]; };
+  DEsubs = derive2 { name="DEsubs"; version="1.7.4"; sha256="0v4yd63zzd0k7y19pcx5mb7iq17dijjldf64c6nwlf69d8gv5lp9"; depends=[circlize DESeq DESeq2 EBSeq edgeR ggplot2 graph igraph jsonlite limma locfit Matrix NBPSeq pheatmap RBGL]; };
   DFP = derive2 { name="DFP"; version="1.39.0"; sha256="10yamzm28gnayrjc58jvj6mjg2j6gr266f65i9rrz5shnz9244wl"; depends=[Biobase]; };
-  DMCHMM = derive2 { name="DMCHMM"; version="1.3.0"; sha256="0076i6d9qpphbxrkz0maqi6qsviix0sxckz6hg5mwrymsawssh48"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; };
-  DMRScan = derive2 { name="DMRScan"; version="1.7.4"; sha256="1gdnn3kzlfhj3vp4j1r7q8ggfqq5jmcx1jyrpd8wc9pn0nhnamiv"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; };
-  DMRcaller = derive2 { name="DMRcaller"; version="1.13.1"; sha256="01ip1xgyr1jjmrg85agbxxg4b6ihy9jkxfrf1hjkpmi1qkzw8pxz"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; };
-  DMRcate = derive2 { name="DMRcate"; version="1.17.0"; sha256="19k6cl4a154hgasqk3nycb0wxra0yg1nvn3ywbsikn17pa6qiyzc"; depends=[DMRcatedata DSS GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors]; };
+  DMCHMM = derive2 { name="DMCHMM"; version="1.3.1"; sha256="01r9kzyjsk43ncw7xbr95r4apxchpkfjl4qilxvgsq8icg0mhqx4"; depends=[BiocParallel calibrate fdrtool GenomicRanges IRanges multcomp rtracklayer S4Vectors SummarizedExperiment]; };
+  DMRScan = derive2 { name="DMRScan"; version="1.7.5"; sha256="1x6nv3688p4lh8bsv3brg35xpn4pk6i1fks2zfdfspvagbq4bqvp"; depends=[GenomeInfoDb GenomicRanges IRanges MASS Matrix mvtnorm RcppRoll]; };
+  DMRcaller = derive2 { name="DMRcaller"; version="1.13.8"; sha256="0lp27mbx6sqh4b7fwsbm0gxk5ng9qabdimxhw4f8dqhsza6mp73p"; depends=[betareg GenomicRanges IRanges Rcpp RcppRoll S4Vectors]; };
+  DMRcate = derive2 { name="DMRcate"; version="1.17.6"; sha256="0ynh5q7shl6as7vafg0z7z4ld2ikk785vhw656viipix4q71k1iv"; depends=[DMRcatedata DSS GenomicRanges Gviz IRanges limma minfi missMethyl plyr S4Vectors]; };
   DMRforPairs = derive2 { name="DMRforPairs"; version="1.17.0"; sha256="0094pw863dnc57kfif490fabcsggplfdr5xh41asldydp2x1pwcy"; depends=[GenomicRanges Gviz R2HTML]; };
   DNABarcodes = derive2 { name="DNABarcodes"; version="1.11.0"; sha256="1hpsdybpj3dszjxvlh7x2j5xdrgyhx03sv15hlg2bn4jj6am4iiy"; depends=[BH Matrix Rcpp]; };
   DNAcopy = derive2 { name="DNAcopy"; version="1.55.0"; sha256="1bmd22nmfbrcwvz9qk6rh4f81faxh7f71fk2pgvgdcz97kzl4g8w"; depends=[]; };
-  DNAshapeR = derive2 { name="DNAshapeR"; version="1.9.5"; sha256="1am9mcfr1fab29p06ppyl74qsdpvbq716vbys0dx8r9j1bf7x36x"; depends=[Biostrings fields GenomicRanges Rcpp]; };
+  DNAshapeR = derive2 { name="DNAshapeR"; version="1.9.6"; sha256="1v29k18l3wqrnhfzgj3lff5pzzgwn5n9956xlx94nbblh01x96lc"; depends=[Biostrings fields GenomicRanges Rcpp]; };
+  DOQTL = derive2 { name="DOQTL"; version="1.17.5"; sha256="1z1qbzg0fw6ygskk1p339dlkmbm6nj8wmwng9izhmipfn6jpfzfv"; depends=[annotate annotationTools Biobase BiocGenerics biomaRt BSgenome_Mmusculus_UCSC_mm10 corpcor doParallel foreach fpc GenomicRanges hwriter IRanges iterators mclust QTLRel regress rhdf5 Rsamtools RUnit VariantAnnotation XML]; };
   DOSE = derive2 { name="DOSE"; version="3.7.1"; sha256="0dldsqs807hgnfx59vl1q90hh1lv9x2dbxndbfi97yvzlkhnar55"; depends=[AnnotationDbi BiocParallel DO_db fgsea ggplot2 GOSemSim qvalue reshape2 S4Vectors]; };
-  DRIMSeq = derive2 { name="DRIMSeq"; version="1.9.0"; sha256="1q3zff7wrk9hflz1jzrs1g0pacsv62rgif0bhglsk1877iqj8nip"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; };
+  DRIMSeq = derive2 { name="DRIMSeq"; version="1.9.2"; sha256="0kpfvphzighq7iryxbn7s6v7k3mi09cv49r2c9gsyklqypv5cvsq"; depends=[BiocGenerics BiocParallel edgeR GenomicRanges ggplot2 IRanges limma MASS reshape2 S4Vectors]; };
   DSS = derive2 { name="DSS"; version="2.29.0"; sha256="1jwjyfx1356j0jxryf8f3mnl764fd5bz5p395z6ax8xsafzkabq1"; depends=[Biobase bsseq DelayedArray]; };
   DTA = derive2 { name="DTA"; version="2.27.0"; sha256="129hvbvdgq7whh1f63gdh28w0g5avl3xqwvjm61makyyqyx47ipf"; depends=[LSD scatterplot3d]; };
-  DaMiRseq = derive2 { name="DaMiRseq"; version="1.5.1"; sha256="0zli040zjbgphlg2f0bxcb69nlhzzfzjr91cs8999p8hb80dml7l"; depends=[arm caret corrplot DESeq2 e1071 EDASeq FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; };
-  DeMAND = derive2 { name="DeMAND"; version="1.11.0"; sha256="1fmswncd9jp49ni7rpg7xkcrnz2nh58xj9nyig1098hib00y70ml"; depends=[KernSmooth]; };
+  DaMiRseq = derive2 { name="DaMiRseq"; version="1.5.3"; sha256="0zxw6ls834cizk6nw8kpbi7p9c2xr2s0892qmizzqbgag8d0mjif"; depends=[arm caret corrplot DESeq2 e1071 EDASeq edgeR FactoMineR FSelector ggplot2 Hmisc ineq kknn limma lubridate MASS pheatmap pls plsVarSel randomForest RColorBrewer reshape2 RSNNS SummarizedExperiment sva]; };
+  DeMAND = derive2 { name="DeMAND"; version="1.11.1"; sha256="00rbd5mwrh9g2ppx0z0kaf1245l7r5rgiyzhrhkrkp6vvbjrhd4i"; depends=[KernSmooth]; };
   DeconRNASeq = derive2 { name="DeconRNASeq"; version="1.23.0"; sha256="0hnnw6k246a0dsj0ppfrj40ddrl3czpdq28gvkahyig64ljwfrbm"; depends=[ggplot2 limSolve pcaMethods]; };
   DeepBlueR = derive2 { name="DeepBlueR"; version="1.7.0"; sha256="198apfr10nfnk82zhmsnk9vpq2ykfi6yh79gwdnnkls8h2r5nqz9"; depends=[data_table diffr dplyr filehash foreach GenomeInfoDb GenomicRanges R_utils RCurl rjson rtracklayer settings stringr withr XML]; };
-  DelayedArray = derive2 { name="DelayedArray"; version="0.7.18"; sha256="1a2a558xc638prbb96xfkd97m40cf3hdv3g40r8a1xfw0vk9669k"; depends=[BiocGenerics BiocParallel IRanges matrixStats S4Vectors]; };
-  DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.3.4"; sha256="12ljlbk01p9cv8vwjapq1nknvsqf3qp44qh4yyq1j5cr8l8rg2xx"; depends=[DelayedArray IRanges Matrix matrixStats S4Vectors]; };
+  DelayedArray = derive2 { name="DelayedArray"; version="0.7.49"; sha256="0nkpnxa91prhfnd0dwfmfr0g3r8i93gy6xcw403s81zw74imn1jk"; depends=[BiocGenerics BiocParallel IRanges matrixStats S4Vectors]; };
+  DelayedMatrixStats = derive2 { name="DelayedMatrixStats"; version="1.3.11"; sha256="0m3dx01ibmxqn4syv5cw88m7b30qlby6fiwjhd3927zmfi3jwl2s"; depends=[BiocParallel DelayedArray HDF5Array IRanges Matrix matrixStats S4Vectors]; };
   DiffBind = derive2 { name="DiffBind"; version="2.9.0"; sha256="0ka72zizphm2sphr8gm53602wgm7rkfc6hx0fql3cb34yjg11wi1"; depends=[amap BiocParallel DESeq2 dplyr edgeR GenomicAlignments GenomicRanges ggplot2 ggrepel gplots IRanges lattice limma locfit RColorBrewer Rcpp Rsamtools S4Vectors SummarizedExperiment systemPipeR zlibbioc]; };
   DiffLogo = derive2 { name="DiffLogo"; version="2.5.0"; sha256="00vk5qj0byh8ggg5nmaa94ddbi42rl59y049bxx37qr98qyw79yj"; depends=[cba]; };
-  Director = derive2 { name="Director"; version="1.7.0"; sha256="0xd8fviwd59smfzvrvwszpv69a74606w8iwds9gq8yi8s38288bs"; depends=[htmltools]; };
+  Director = derive2 { name="Director"; version="1.7.3"; sha256="1yin749xl3v3h01gccvlgkb91l2dn1rkm7asb3q9bxnr389sm4yr"; depends=[htmltools]; };
   DirichletMultinomial = derive2 { name="DirichletMultinomial"; version="1.23.0"; sha256="1wxb094p90628bbkm4vzjrpxcagcpm17iqa0f1hjfy7b8a1my9wh"; depends=[BiocGenerics IRanges S4Vectors]; };
-  DominoEffect = derive2 { name="DominoEffect"; version="1.1.0"; sha256="1n2hr24izsd3zvxc795zw7678kwz4glaz09r49s0wr1lp70rgzb0"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; };
+  DominoEffect = derive2 { name="DominoEffect"; version="1.1.2"; sha256="1ri0224my8imjjd95ccdg3gmpq4npji67f01skvycn7j2z5illq8"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomeInfoDb GenomicRanges IRanges SummarizedExperiment VariantAnnotation]; };
   Doscheda = derive2 { name="Doscheda"; version="1.3.0"; sha256="1yfywqzxjj88wwnwmrm3yd9z1al74w2xzijzk1zqdjy5lg8vc1qn"; depends=[affy calibrate corrgram d3heatmap drc DT ggplot2 gridExtra httr jsonlite limma matrixStats prodlim readxl reshape2 shiny shinydashboard stringr vsn]; };
   DriverNet = derive2 { name="DriverNet"; version="1.21.0"; sha256="0ja7jpnh2rh4gkcv0h99mma19rk07y1vmh4hpkyxg1m1mb1q4vyv"; depends=[]; };
-  DropletUtils = derive2 { name="DropletUtils"; version="1.1.5"; sha256="1yq3ijm3g71gh9gp72lwr7dzq395j548xvp11vrn0bp867rx4b5s"; depends=[beachmat BiocParallel edgeR Matrix Rcpp rhdf5 Rhdf5lib S4Vectors SingleCellExperiment]; };
+  DropletUtils = derive2 { name="DropletUtils"; version="1.1.13"; sha256="1qpds9drjvxwjdlv844lsv081iyp4syzvhpkm90skd5wpsfiriy7"; depends=[beachmat BiocParallel edgeR HDF5Array Matrix Rcpp rhdf5 Rhdf5lib S4Vectors SingleCellExperiment]; };
   DrugVsDisease = derive2 { name="DrugVsDisease"; version="2.23.0"; sha256="01hrd65q8h9r09y91vnl7x8gczgi3q8vlxihyingxjdc09qn86xd"; depends=[affy annotate ArrayExpress BiocGenerics biomaRt cMap2data DrugVsDiseasedata GEOquery hgu133a_db hgu133a2_db hgu133plus2_db limma qvalue RUnit xtable]; };
-  DupChecker = derive2 { name="DupChecker"; version="1.19.0"; sha256="03bfyg1h08ya41svmvnyd0mxs4qakrk7xwpyv2m51cn3rk2cgacl"; depends=[R_utils RCurl]; };
+  DupChecker = derive2 { name="DupChecker"; version="1.19.1"; sha256="0a8vaamkpqwir3w3clfihpwcbjfmaaccwb86b6i6lydglkbdhnpq"; depends=[R_utils RCurl]; };
   DynDoc = derive2 { name="DynDoc"; version="1.59.0"; sha256="1cdyv6ylgdz7fyj8dnndy5y0khg0na8r7sss5p1pja73idxdqpvf"; depends=[]; };
-  EBImage = derive2 { name="EBImage"; version="4.23.0"; sha256="1v9lnyc5x3xwrabqgr4l9mx67bgwbq4gyyimq87pm1id5p3vpb9d"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; };
+  EBImage = derive2 { name="EBImage"; version="4.23.2"; sha256="0q91m78i1s5ds5971rbdgrlv6d4mj30ljssbg75gw1gxzhlhaczg"; depends=[abind BiocGenerics fftwtools htmltools htmlwidgets jpeg locfit png RCurl tiff]; };
   EBSEA = derive2 { name="EBSEA"; version="1.9.0"; sha256="14bgrkfx93gcr0j9fj48krnfvhnbjxnqanvnx85n5x48bk40s2jr"; depends=[edgeR limma plyr]; };
   EBSeq = derive2 { name="EBSeq"; version="1.21.0"; sha256="0nbw3mkqgify3yijwizdznafvfyd4qizfqaj5f3w04nx0h8m8b2h"; depends=[blockmodeling gplots testthat]; };
   EBSeqHMM = derive2 { name="EBSeqHMM"; version="1.15.0"; sha256="067fi2vy35y3n6a5264a7af3j03jg46fp7vzl80ca7x8vqji4xvy"; depends=[EBSeq]; };
   EBarrays = derive2 { name="EBarrays"; version="2.45.0"; sha256="1wvim2qldy74qccgqkj6hwqxjhwm3sgj2gsr88qqh16gvfqy1w9z"; depends=[Biobase cluster lattice]; };
   EBcoexpress = derive2 { name="EBcoexpress"; version="1.25.0"; sha256="1xpihh3pxm492kqrf7pnz6sarz98hqhrgw3ybicja3cvn5ihlk1j"; depends=[EBarrays mclust minqa]; };
-  EDASeq = derive2 { name="EDASeq"; version="2.15.2"; sha256="1d7dq3fl9qmv5bll4vkbj4zvd9md44grpr4vdxk29wcjm6dzjyma"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; };
-  EDDA = derive2 { name="EDDA"; version="1.19.0"; sha256="1q15lj4sa76yhjgyzng1sr60aa1dbfyw51dphvg7n1c1jngqib0n"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; };
-  EGAD = derive2 { name="EGAD"; version="1.9.0"; sha256="1k1bv3z5dvgiid0vdfc3kkx9b37qbafybqxvdc188685nfkkkr03"; depends=[affy arrayQualityMetrics Biobase GEOquery gplots igraph impute limma MASS Matrix plyr RColorBrewer RCurl zoo]; };
-  EGSEA = derive2 { name="EGSEA"; version="1.9.0"; sha256="1qasrnfmrnvk05v4w4yyj0wyp02jcg0ww8svjnmhhlqpyj256s99"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 Glimma globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; };
-  ELBOW = derive2 { name="ELBOW"; version="1.17.0"; sha256="0g4ss21apdp6zsg70fl79f2xz4gwdl0ygyp03a636xpg2y6hbrx3"; depends=[]; };
-  ELMER = derive2 { name="ELMER"; version="2.5.4"; sha256="0qzivgb21y1g7y7j7dm0y2w7w2wdvxsfxblp8q21rh5z1wxr696x"; depends=[biomaRt circlize ComplexHeatmap doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr readr reshape rmarkdown rvest S4Vectors stringr SummarizedExperiment TCGAbiolinks xml2]; };
+  EDASeq = derive2 { name="EDASeq"; version="2.15.4"; sha256="0lsp0cgix7qkqry6hk2a6wqp8cfqcr3apdsi31jgjnxqz7fn7jlj"; depends=[AnnotationDbi aroma_light Biobase BiocGenerics biomaRt Biostrings DESeq GenomicFeatures GenomicRanges IRanges Rsamtools ShortRead]; };
+  EDDA = derive2 { name="EDDA"; version="1.19.1"; sha256="0cs962g60shzywbp4q33hxv03qwrkr6cn12c63i8wfp49kz1g7h1"; depends=[baySeq DESeq edgeR Rcpp ROCR snow]; };
+  EGAD = derive2 { name="EGAD"; version="1.9.2"; sha256="0xb1lcrzivadfnwl2v0x0aldsqzilcg7ygy6mizbijpfr79g8y42"; depends=[affy arrayQualityMetrics Biobase GEOquery gplots igraph impute limma MASS Matrix plyr RColorBrewer RCurl zoo]; };
+  EGSEA = derive2 { name="EGSEA"; version="1.9.2"; sha256="1mphjnwvwnphq2iby76w49rlwflxvhm72488gv0ls5pyvvj68r32"; depends=[AnnotationDbi Biobase DT edgeR EGSEAdata gage ggplot2 Glimma globaltest gplots GSVA HTMLUtils htmlwidgets hwriter limma metap org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db PADOG pathview plotly RColorBrewer safe stringi topGO]; };
+  ELBOW = derive2 { name="ELBOW"; version="1.17.1"; sha256="1wz4msw03g9c6732zciqpcabq8q3arxng5cbzpfgym22n0gsri82"; depends=[]; };
+  ELMER = derive2 { name="ELMER"; version="2.5.7"; sha256="0a987d542rgydny6fwpvgrhjr0729b8mpr2nyv3j7ic65c1hzibf"; depends=[biomaRt circlize ComplexHeatmap doParallel downloader dplyr ELMER_data GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel gridExtra Gviz IRanges lattice magrittr Matrix MultiAssayExperiment plotly plyr readr reshape rmarkdown rvest S4Vectors stringr SummarizedExperiment TCGAbiolinks xml2]; };
   EMDomics = derive2 { name="EMDomics"; version="2.11.0"; sha256="0snk2fcikj34s2hhfg9i5di92nd8lbg26ypvc1b1zcf7rj5yy07p"; depends=[BiocParallel CDFt emdist ggplot2 matrixStats preprocessCore]; };
   ENCODExplorer = derive2 { name="ENCODExplorer"; version="2.7.0"; sha256="01sjpf4s0gdsiv6pqjmh0jq582wax9za47qf619igyzhwy2crvp1"; depends=[data_table dplyr DT jsonlite RCurl shiny shinythemes stringi stringr tidyr]; };
   ENVISIONQuery = derive2 { name="ENVISIONQuery"; version="1.29.0"; sha256="1pj6r1sb3izyr2ilv95j3nl92297zxiypjipl1x3nrqpnjn7k032"; depends=[rJava XML]; };
   ENmix = derive2 { name="ENmix"; version="1.17.0"; sha256="0hk2qj8y976ybz2pxj5ldnr13z3l64s8z7na18ry85yvbv90xzs3"; depends=[doParallel foreach geneplotter impute MASS minfi preprocessCore SummarizedExperiment sva wateRmelon]; };
+  ERSSA = derive2 { name="ERSSA"; version="0.99.8"; sha256="0l56mvag5y1svm18l093037ilarna51zz56bxnbidzgvqgw1cdfc"; depends=[BiocParallel DESeq2 edgeR ggplot2 plyr RColorBrewer]; };
   EasyqpcR = derive2 { name="EasyqpcR"; version="1.23.2"; sha256="1fdfhclpyv6ls6misnwa4kvm9qlgnv65pqg58q2rqd2w012kic02"; depends=[gWidgetsRGtk2 matrixStats plotrix plyr]; };
   EmpiricalBrownsMethod = derive2 { name="EmpiricalBrownsMethod"; version="1.9.0"; sha256="131xg14zp0kqxwk1y2yfxb0sysf4ad97klrgsrnqkdbvjfz8wfa0"; depends=[]; };
-  EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.11.2"; sha256="1rfls2xz7v7bj27f07rzvlq4d12ajzbcpza11wq6jy73snvb29p4"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; };
-  EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.11.4"; sha256="0lwlwpm1rjycj8nwiyiiv061bhchgvk231l3l4wrw3x1zif7rwhc"; depends=[AnnotationDbi BiocFileCache biocGraph ComplexHeatmap DESeq2 EDASeq edgeR geneplotter GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma MASS pathview rappdirs ReportingTools Rgraphviz S4Vectors safe SPIA SummarizedExperiment topGO]; };
+  EnhancedVolcano = derive2 { name="EnhancedVolcano"; version="0.99.16"; sha256="0r5v611wckw7i6qyd5zhdi7m98hqvypn3zxqy4gbis2khmblnhq0"; depends=[ggplot2 ggrepel]; };
+  EnrichedHeatmap = derive2 { name="EnrichedHeatmap"; version="1.11.3"; sha256="1y0w504rvh9zrr8dr57zdrlm8pjv34jcvlvd8d20f11yxc9c82yx"; depends=[circlize ComplexHeatmap GenomicRanges GetoptLong IRanges locfit matrixStats Rcpp]; };
+  EnrichmentBrowser = derive2 { name="EnrichmentBrowser"; version="2.11.19"; sha256="15jcfandrlihhiw12w4akdhavr8z1pkg9cd6jb5n88dhm4hb7f72"; depends=[AnnotationDbi BiocFileCache biocGraph BiocManager ComplexHeatmap DESeq2 EDASeq edgeR geneplotter GO_db graph graphite GSEABase hwriter KEGGgraph KEGGREST limma MASS pathview rappdirs ReportingTools Rgraphviz S4Vectors safe SPIA SummarizedExperiment topGO]; };
   EpiDISH = derive2 { name="EpiDISH"; version="1.3.0"; sha256="07ln6hyq2lfil1xwackvhb2biay3ig6bvsyf2ll5n3glk938x02d"; depends=[e1071 MASS quadprog]; };
-  EventPointer = derive2 { name="EventPointer"; version="1.5.0"; sha256="1fa6xq8kwwbp39whm2xp8si3kz5hfpndlga8mf2jjlj2gd3nf3xj"; depends=[affxparser doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges graph igraph limma MASS Matrix matrixStats nnls prodlim RBGL S4Vectors SGSeq stringr SummarizedExperiment]; };
+  EventPointer = derive2 { name="EventPointer"; version="1.99.3"; sha256="01fbip59zzhy5fg5vr1yw36dbfzcmfr23rfxz7f0r6ymihz892m3"; depends=[affxparser cobs doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges graph igraph IRanges limma MASS Matrix matrixStats nnls prodlim qvalue RBGL rhdf5 S4Vectors SGSeq stringr SummarizedExperiment]; };
+  ExCluster = derive2 { name="ExCluster"; version="0.99.13"; sha256="1f9qw645bir2sxb3h3pzswhjm6p1fd2dlj6bmlsqlb9awxsj8r47"; depends=[GenomicRanges IRanges matrixStats Rsubread rtracklayer]; };
   ExiMiR = derive2 { name="ExiMiR"; version="2.23.0"; sha256="01syzl0q719fif0pdhn31hrwpbq14idwpyppcwl0b0156aid7lwv"; depends=[affy affyio Biobase limma preprocessCore]; };
-  ExperimentHub = derive2 { name="ExperimentHub"; version="1.7.1"; sha256="0jy93f8dy5mmmc0hdd97h4di4660878gfi7mhjwk7rhldrcsm8jh"; depends=[AnnotationHub BiocGenerics BiocInstaller curl S4Vectors]; };
-  ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.7.0"; sha256="0gwv7zjdwhsxi992qxhds7rbha3xlqfix6cxnipx53gi72cl5plm"; depends=[AnnotationHubData BiocCheck BiocGenerics BiocInstaller curl DBI ExperimentHub httr S4Vectors]; };
+  ExperimentHub = derive2 { name="ExperimentHub"; version="1.7.7"; sha256="002wzd5nll3vxncqqq95slsadj40gdj6bd59qhdhz4v6gz005h60"; depends=[AnnotationHub BiocGenerics BiocManager curl S4Vectors]; };
+  ExperimentHubData = derive2 { name="ExperimentHubData"; version="1.7.5"; sha256="1q6pc9hl5q7r8vmpk1ixb95xjh6lbikab76yhjp89xzapiprd1sl"; depends=[AnnotationHubData BiocCheck BiocGenerics BiocManager biocViews curl DBI ExperimentHub graph httr S4Vectors]; };
   ExpressionAtlas = derive2 { name="ExpressionAtlas"; version="1.9.1"; sha256="0pg30fbiz2q45b06p5jmav4gncbl01003m9m8lk2ifi0sxvx4jn6"; depends=[Biobase httr limma S4Vectors SummarizedExperiment XML xml2]; };
   ExpressionView = derive2 { name="ExpressionView"; version="1.33.0"; sha256="14h6jgdaikyjpf5bqban0ixscw3k28pczh0bsvnkhyb5916qfxch"; depends=[AnnotationDbi bitops caTools eisa GO_db isa2 KEGG_db]; };
-  FELLA = derive2 { name="FELLA"; version="1.1.1"; sha256="0vqq9bzdy691c11rb2dbgvv0nwqqy8wdd397wjh991lfk3f4n3bz"; depends=[igraph KEGGREST Matrix plyr]; };
-  FEM = derive2 { name="FEM"; version="3.9.0"; sha256="0nb9gp6x1crzrj9jgz7s6mq639iqp7zdf1q7qqv0ri3gcgw758jw"; depends=[AnnotationDbi BiocGenerics corrplot graph igraph impute limma marray Matrix org_Hs_eg_db]; };
+  FCBF = derive2 { name="FCBF"; version="0.99.3"; sha256="0drpbnx5sampabr17rwjj7biw5bpngdmrrma2p3h5yq5llb409jr"; depends=[ggplot2 gridExtra SummarizedExperiment]; };
+  FELLA = derive2 { name="FELLA"; version="1.1.6"; sha256="1d284qaz74d7lgxl3gn0c9i6a33x6j0xf9sbjbpm8bpl0kbhr0ln"; depends=[igraph KEGGREST Matrix plyr]; };
+  FEM = derive2 { name="FEM"; version="3.9.2"; sha256="0nbg1rbx7gszbqf0xjibsgwapjrv8lniiv7kw0j50ppab69qxiqq"; depends=[AnnotationDbi BiocGenerics corrplot graph igraph impute limma marray Matrix org_Hs_eg_db]; };
+  FGNet = derive2 { name="FGNet"; version="3.15.4"; sha256="1pnadm9c3ckdd5k9jgq3jmfny8mfc3w7j5w08vn0khnqlq9cp3x8"; depends=[hwriter igraph plotrix png R_utils RColorBrewer reshape2 XML]; };
   FISHalyseR = derive2 { name="FISHalyseR"; version="1.15.0"; sha256="0izn77dhzhsg69i893r9sy6qalw4qr120m6k5x5k6z9w01dgq47x"; depends=[abind EBImage]; };
-  FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.17.0"; sha256="1m3vcffnbyf27x481gx4xmxrknb70dk0ll08zd14kfvn6lf3cgf4"; depends=[fda MASS]; };
+  FRGEpistasis = derive2 { name="FRGEpistasis"; version="1.17.1"; sha256="17qmq5mgqhfzw3v4gl9waa1ni6h8llz2hz63p3mwrx1yixinsn20"; depends=[fda MASS]; };
   FamAgg = derive2 { name="FamAgg"; version="1.9.0"; sha256="1vqkaa1cpzd2cdyql66skz3jkrnp5ibdbhwipkj82dgww9zwwkbx"; depends=[BiocGenerics gap igraph kinship2 Matrix survey]; };
-  FastqCleaner = derive2 { name="FastqCleaner"; version="0.99.39"; sha256="18zklgacbk8iv8i6rlmip8bcfwn9v18jpf4xb9p7pkadldphjnfc"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; };
-  FindMyFriends = derive2 { name="FindMyFriends"; version="1.11.0"; sha256="0ij596qkpn4y5m9zmj6hcamrmjjm8nwqjm9d2g1wq28i5xrmra0w"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; };
-  FitHiC = derive2 { name="FitHiC"; version="1.7.0"; sha256="071246cfl4iqy3nnl2c24n8sd9dkmjjj8cna74dh1km3cc6xb0vz"; depends=[data_table fdrtool Rcpp]; };
-  FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.13.0"; sha256="09kqhj41w7snkr1m29wmjj4n7acy821mv8kbb49f1mljaxz0v94q"; depends=[jsonlite RCurl XML]; };
+  FastqCleaner = derive2 { name="FastqCleaner"; version="0.99.40"; sha256="1hfrlr3lwcqvb1c5w6n5ffml5znjil4dchhcz4jwm2qnf6zcha0n"; depends=[Biostrings DT htmltools IRanges Rcpp S4Vectors shiny shinyBS ShortRead]; };
+  FindMyFriends = derive2 { name="FindMyFriends"; version="1.11.2"; sha256="0mxpv5c2fyvcxwzaiig9qy8lg78fd8ms35nchd86nj1n4265kkx2"; depends=[Biobase BiocGenerics BiocParallel Biostrings digest dplyr filehash ggdendro ggplot2 gtable igraph IRanges kebabs Matrix Rcpp reshape2 S4Vectors]; };
+  FitHiC = derive2 { name="FitHiC"; version="1.7.1"; sha256="07d3lywhc665qm3kp6f89dnvjvkgsdsvqk0ms6b3w402j12jvxsb"; depends=[data_table fdrtool Rcpp]; };
+  FlowRepositoryR = derive2 { name="FlowRepositoryR"; version="1.13.1"; sha256="1vbc2bl5afa2zvqj8xp4ajdij44732689n1c28i1s32y92wzgjng"; depends=[jsonlite RCurl XML]; };
   FlowSOM = derive2 { name="FlowSOM"; version="1.13.0"; sha256="0vw98kxlcyd9rwa2r9rgjwfp5f5pmb122w2xk1gfhsf9kqh7db7g"; depends=[BiocGenerics ConsensusClusterPlus flowCore flowUtils igraph tsne XML]; };
+  FoldGO = derive2 { name="FoldGO"; version="0.99.10"; sha256="0df75rvpc0031rjrx5pwfwprm1nrli2l2yafa8jbqnycz02z0dz4"; depends=[ggplot2 tidyr topGO]; };
   FourCSeq = derive2 { name="FourCSeq"; version="1.15.0"; sha256="0d8qnalv97a37l0xqxi4qi7s03zxs81122h4rw6rpi03pn5h7i10"; depends=[Biobase Biostrings DESeq2 fda GenomicAlignments GenomicRanges ggbio ggplot2 gtools LSD Matrix reshape2 Rsamtools rtracklayer SummarizedExperiment]; };
   FunChIP = derive2 { name="FunChIP"; version="1.7.0"; sha256="15pfl68yynvidx9r69xxf3zavn79savabam5yjjwqq7g9yvhzjw5"; depends=[doParallel fda foreach GenomeInfoDb GenomicAlignments GenomicRanges RColorBrewer Rcpp Rsamtools shiny]; };
-  FunciSNP = derive2 { name="FunciSNP"; version="1.25.0"; sha256="0dl63s5f8s82www9maf10bbmss7ddbflq820lcq1zgrfcdr9a484"; depends=[Biobase BiocGenerics ChIPpeakAnno FunciSNP_data GenomicRanges ggplot2 IRanges plyr reshape Rsamtools rtracklayer S4Vectors scales snpStats TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; };
+  FunciSNP = derive2 { name="FunciSNP"; version="1.25.3"; sha256="0w9wqlkj52dwzrhxwq193435camj12kjv1a70rdnzdlvi3y849hm"; depends=[Biobase BiocGenerics ChIPpeakAnno FunciSNP_data GenomicRanges ggplot2 IRanges plyr reshape Rsamtools rtracklayer S4Vectors scales snpStats TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; };
   GA4GHclient = derive2 { name="GA4GHclient"; version="1.5.0"; sha256="1bcskcxcmv47rdgrw0i8rm4cn27jqy86rx8z83qnanbzqp4g7kgg"; depends=[BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges httr IRanges jsonlite S4Vectors VariantAnnotation]; };
   GA4GHshiny = derive2 { name="GA4GHshiny"; version="1.3.0"; sha256="031p9qa6cp4gxlgp8whswl7b11d24d4zl3m9fkqg3i461kjyswxj"; depends=[AnnotationDbi BiocGenerics dplyr DT GA4GHclient GenomeInfoDb GenomicFeatures openxlsx purrr S4Vectors shiny shinyjs shinythemes tidyr]; };
-  GARS = derive2 { name="GARS"; version="1.1.0"; sha256="0qczfvlywnqiz06ggvndmq32sg61qm7njg77fzml5v66anqsqmhq"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; };
+  GARS = derive2 { name="GARS"; version="1.1.1"; sha256="004i5nkmdi61fkkxps1frlhs4gd8ix6s3yypzrl6s4afvm05hw4p"; depends=[cluster DaMiRseq ggplot2 MLSeq SummarizedExperiment]; };
   GAprediction = derive2 { name="GAprediction"; version="1.7.0"; sha256="04bxpyc13mq7klkpkyw574cbk6xsjn9n91za7hvmzg5xfzgdr2rg"; depends=[glmnet Matrix]; };
-  GDCRNATools = derive2 { name="GDCRNATools"; version="1.1.0"; sha256="0i8gyq3rk79ph099bivgrvl33c73vhrlqss0ms61zv8r392prvjh"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; };
-  GDSArray = derive2 { name="GDSArray"; version="1.1.0"; sha256="0jn3jjpr5z3nrhral7bphlxnc5mhg2nllpzf73j2i4q7dbyhjxic"; depends=[BiocGenerics DelayedArray gdsfmt IRanges S4Vectors SeqArray SNPRelate]; };
-  GEM = derive2 { name="GEM"; version="1.7.0"; sha256="01vyj5nhzs6g3drnybl5i5wj2n2x50wjfnb2q62r053rz7r4xpwj"; depends=[ggplot2]; };
-  GENESIS = derive2 { name="GENESIS"; version="2.11.5"; sha256="1vkxb4ry8ghl9c38lr5dkwkf5kjak0h0vq18k69fpj94dfkkn91y"; depends=[Biobase BiocGenerics dplyr gdsfmt GenomicRanges graph GWASTools IRanges Matrix S4Vectors SeqArray SeqVarTools]; };
+  GDCRNATools = derive2 { name="GDCRNATools"; version="1.1.9"; sha256="134f9264b1br2s2d99dlad1r8nwzkv78qkr7iqym8s1anl7xsh9j"; depends=[BiocParallel biomaRt clusterProfiler DESeq2 DOSE DT edgeR GenomicDataCommons ggplot2 gplots jsonlite limma org_Hs_eg_db pathview rjson shiny survival survminer XML]; };
+  GDSArray = derive2 { name="GDSArray"; version="1.1.1"; sha256="0cgs1fhzqax8nbihifhmgd6clk4wf3586x85cmg06ydxdh9yyzlv"; depends=[BiocGenerics DelayedArray gdsfmt S4Vectors SeqArray SNPRelate]; };
+  GEM = derive2 { name="GEM"; version="1.7.1"; sha256="0sxlqkd2rhi511jmi2c82ib0krx9pynssvw0gcr2mrrxj5gy2vcz"; depends=[ggplot2]; };
+  GENESIS = derive2 { name="GENESIS"; version="2.11.17"; sha256="1czvvmqnmpx9wpq6hw4xfwhj1vjrwdrwbj8b4zcs1x7dv8qkvyb5"; depends=[Biobase BiocGenerics data_table dplyr foreach gdsfmt GenomicRanges GWASTools igraph IRanges Matrix reshape2 S4Vectors SeqArray SeqVarTools SNPRelate]; };
   GENIE3 = derive2 { name="GENIE3"; version="1.3.1"; sha256="0zp1g97xmigjarpbmfnay1gac5fjhcslrdp656gzafdah32k2nzl"; depends=[reshape2]; };
   GEOmetadb = derive2 { name="GEOmetadb"; version="1.43.0"; sha256="05ad0h84vqkcp9b9966dsmgwl4r2xsg9wjjgwcfx00yc9jgg94lj"; depends=[GEOquery RSQLite]; };
-  GEOquery = derive2 { name="GEOquery"; version="2.49.0"; sha256="0ylny4lni33hj1qspqig7iw9g3h9mz4yc9bj8cdf13w2qj4sjysz"; depends=[Biobase dplyr httr limma magrittr readr tidyr xml2]; };
+  GEOquery = derive2 { name="GEOquery"; version="2.49.1"; sha256="1vxhz9drmj90j67ga7jflzb602bs1b9qdamz7vgazlpl0xj7ls5s"; depends=[Biobase dplyr httr limma magrittr readr tidyr xml2]; };
   GEOsubmission = derive2 { name="GEOsubmission"; version="1.33.0"; sha256="17qck1a7szkgaixkjzq2c4vw7kb7cy8sv609z3i8h0pljrprvx07"; depends=[affy Biobase]; };
   GEWIST = derive2 { name="GEWIST"; version="1.25.0"; sha256="0dr7vz9v8cfjg8vxxqs0c7i4vzvfdnp741b82radwb0ya4crfml0"; depends=[car]; };
   GGBase = derive2 { name="GGBase"; version="3.43.2"; sha256="1kwh6di0kgw821mh0gmgrm8b0mlbcyji5yc0pn4v836w0wc0amqb"; depends=[AnnotationDbi Biobase BiocGenerics digest genefilter GenomicRanges IRanges limma Matrix S4Vectors snpStats SummarizedExperiment]; };
-  GGtools = derive2 { name="GGtools"; version="5.17.0"; sha256="06qldw101w7syy1m9ynq9rpxs2546yzn8zdmsp416aawn3qw2xjb"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin Homo_sapiens IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; };
+  GGtools = derive2 { name="GGtools"; version="5.17.1"; sha256="1p7wczch0nnb5ax5g1889iz3qr5ffwyhgvlrln19ypb20c454cnk"; depends=[AnnotationDbi biglm Biobase BiocGenerics Biostrings bit data_table ff GenomeInfoDb GenomicRanges GGBase ggplot2 Gviz hexbin Homo_sapiens IRanges iterators reshape2 ROCR Rsamtools rtracklayer S4Vectors snpStats VariantAnnotation]; };
   GIGSEA = derive2 { name="GIGSEA"; version="0.99.25"; sha256="0k6njipzq9r6g9gkn9g2blkmhq752yv4n2127wxvxfi4kkwf8nfc"; depends=[locfdr MASS Matrix]; };
   GISPA = derive2 { name="GISPA"; version="1.5.0"; sha256="1030cwbkccj2scjmszlzbxd28qgwga26hf86jly8xmw9qvpa77y1"; depends=[Biobase changepoint data_table genefilter GSEABase HH lattice latticeExtra plyr scatterplot3d]; };
   GLAD = derive2 { name="GLAD"; version="2.45.1"; sha256="1cpjai8dxqb35xf2933rf4z08zmli760scz6s1zdzbgpc92dl2zl"; depends=[aws]; };
   GMRP = derive2 { name="GMRP"; version="1.9.0"; sha256="06q87139z5dgl0c4i8jhry15q9ah9k19kgjmadkb55lfsb3akazn"; depends=[diagram GenomicRanges plotrix]; };
-  GOFunction = derive2 { name="GOFunction"; version="1.29.0"; sha256="08xyzk6hs3v263k949l94g6xq9lg5k86yzgqr89bmcyinsxlqk1j"; depends=[AnnotationDbi Biobase DBI GO_db graph Rgraphviz SparseM]; };
-  GOSemSim = derive2 { name="GOSemSim"; version="2.7.0"; sha256="1qxvx4mk49k5d51xnvxn8wsw6dsidskpx6qddnm42ls9a4d9cypd"; depends=[AnnotationDbi GO_db Rcpp]; };
+  GOFunction = derive2 { name="GOFunction"; version="1.29.1"; sha256="05yz8kl6m3ypdvi5mb813nvc8s75ybbc16ppdza6pkrf5cdawy55"; depends=[AnnotationDbi Biobase DBI GO_db graph Rgraphviz SparseM]; };
+  GOSemSim = derive2 { name="GOSemSim"; version="2.7.1"; sha256="1q1h4ak6ki9hn9psrx17psf7kmcn2c7jy5q428qvwk4raq5fhdh0"; depends=[AnnotationDbi GO_db Rcpp]; };
   GOSim = derive2 { name="GOSim"; version="1.19.0"; sha256="0irpycjkzzdymg50zf2szgf7v4s2s0skfpjf5ckdrzskkjr2jzc1"; depends=[annotate AnnotationDbi cluster corpcor flexmix GO_db graph Matrix org_Hs_eg_db RBGL Rcpp topGO]; };
-  GOTHiC = derive2 { name="GOTHiC"; version="1.17.0"; sha256="0n0h9k190p1glmvlrdpa5xdxj797mfdzb109yj5wy981s5q11gpb"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; };
+  GOTHiC = derive2 { name="GOTHiC"; version="1.17.1"; sha256="00na8sn5fszb9z0z58xwlrxzwvxsahhisn2sc8g6xqcfld231pfr"; depends=[BiocGenerics Biostrings BSgenome data_table GenomicRanges ggplot2 IRanges Rsamtools rtracklayer S4Vectors ShortRead]; };
   GOexpress = derive2 { name="GOexpress"; version="1.15.0"; sha256="0k1hiinzn4553gh6app0kvd84md0g3jydv1y2rlzrcasamba7xvv"; depends=[Biobase biomaRt ggplot2 gplots randomForest RColorBrewer RCurl stringr]; };
-  GOfuncR = derive2 { name="GOfuncR"; version="1.1.2"; sha256="0w2f866j82qcyvjj2cn9cqmaxx0sijywbxhsqfkvrsr8vbkhbmgi"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; };
-  GOpro = derive2 { name="GOpro"; version="1.7.0"; sha256="07qpvf17w1cq8qxdg0xdygdgnk9dc15ar7422q0y54kcgnfq0zj4"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; };
+  GOfuncR = derive2 { name="GOfuncR"; version="1.1.6"; sha256="10bvn7hq8igd1wj4izg6nb06v4dn88gc65r7pq02z29dz1n5rbnv"; depends=[AnnotationDbi GenomicRanges gtools IRanges mapplots Rcpp vioplot]; };
+  GOpro = derive2 { name="GOpro"; version="1.7.1"; sha256="0np0df5nfgcr435ngs8bbfiklp8b3v01842jkfdf2wwasx7c4mlw"; depends=[AnnotationDbi BH dendextend doParallel foreach GO_db IRanges MultiAssayExperiment org_Hs_eg_db Rcpp S4Vectors]; };
   GOstats = derive2 { name="GOstats"; version="2.47.0"; sha256="1dxzr3xnn60iy2xv8k0j1r9bz1lq1g1n792gzl308dsy35p25cim"; depends=[annotate AnnotationDbi AnnotationForge Biobase Category GO_db graph RBGL Rgraphviz]; };
+  GOsummaries = derive2 { name="GOsummaries"; version="2.17.2"; sha256="1ndpqr43rs3wrsrm5i0bn4xhcjylpddf95vnmyzq3rn3vc0y89sd"; depends=[ggplot2 gProfileR gtable limma plyr Rcpp reshape2]; };
   GRENITS = derive2 { name="GRENITS"; version="1.33.0"; sha256="1jgsk0wcrkcvf6cgypmdyj6zjfxwxan5xm88l1ycdrilfrx1g582"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; };
-  GRmetrics = derive2 { name="GRmetrics"; version="1.7.0"; sha256="1vbnbn7r4fjv2p2qn5681kg0yqj5s1k4hf5jj52qgzjrp2qs4s6l"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; };
-  GRridge = derive2 { name="GRridge"; version="1.5.0"; sha256="10kz82nj90ilkj6wlsfvqlqrikgm5qw95m02xn99vghs4bj3yh0d"; depends=[glmnet graph Iso mvtnorm penalized survival]; };
+  GRmetrics = derive2 { name="GRmetrics"; version="1.7.3"; sha256="1xnbfqqw63inh1fyfclb369b6j3ihn6jnvglkmrvp609x104sakb"; depends=[drc ggplot2 plotly S4Vectors SummarizedExperiment]; };
+  GRridge = derive2 { name="GRridge"; version="1.5.3"; sha256="1bdv13j5vk38mrj06dms6xgyl21xqf5rzp8f5y8p7a0q36npflcr"; depends=[glmnet graph Iso mvtnorm penalized survival]; };
   GSALightning = derive2 { name="GSALightning"; version="1.9.0"; sha256="1qwq8yawf0llik4880y9j3qzbl9py404wrp6p2738qjb1mxyx9nr"; depends=[data_table Matrix]; };
-  GSAR = derive2 { name="GSAR"; version="1.15.0"; sha256="0i1rapjvdyw596vaqvsk49qbbrjnz1pam34559ws767r70vp0nng"; depends=[igraph]; };
-  GSCA = derive2 { name="GSCA"; version="2.11.0"; sha256="1w3028l6bj92phwhnxs71vxc1wn1bbqac37f4anr8wrxw1bvngid"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; };
-  GSEABase = derive2 { name="GSEABase"; version="1.43.0"; sha256="0f1rh227kx0wxndvgc283jfml5v2zmf184ajghflpq2crhv0sj7j"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; };
-  GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.1.0"; sha256="1ykpinxwz9hqpb8wjrv8jwcq4gmnjkmxg4b8akgdwlypv766smgj"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub GEOquery KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO rappdirs S4Vectors SummarizedExperiment]; };
+  GSAR = derive2 { name="GSAR"; version="1.15.1"; sha256="185ywirc49x7dy3vzy346avzsc16xjzsdr4njfr7f5bc421xkyxz"; depends=[igraph]; };
+  GSCA = derive2 { name="GSCA"; version="2.11.1"; sha256="1ahkd5ivr38c4igmwdr5fk5kaysw3128a4y15ydz2ab2488vgsd4"; depends=[ggplot2 gplots RColorBrewer reshape2 rhdf5 shiny sp]; };
+  GSEABase = derive2 { name="GSEABase"; version="1.43.2"; sha256="1zhzvcjv9m9d0qmhf5csafq5inb1czkmwxm1ivyh2zrn2a66f8kl"; depends=[annotate AnnotationDbi Biobase BiocGenerics graph XML]; };
+  GSEABenchmarkeR = derive2 { name="GSEABenchmarkeR"; version="1.1.1"; sha256="102hvayxljl0nk4593aw0hdpdr929v5yhknyppnxyqrnmply8vqp"; depends=[AnnotationDbi AnnotationHub Biobase BiocFileCache BiocParallel edgeR EnrichmentBrowser ExperimentHub GEOquery KEGGandMetacoreDzPathwaysGEO KEGGdzPathwaysGEO rappdirs S4Vectors SummarizedExperiment]; };
   GSEAlm = derive2 { name="GSEAlm"; version="1.41.0"; sha256="1di0d7zpsigi6k4bxfnq0yniyssxrmzdih3xayg6facpwgyhkp6n"; depends=[Biobase]; };
   GSRI = derive2 { name="GSRI"; version="2.29.0"; sha256="0g3nncckasyx3n6nq5aihahzk73h6xb1m8xmq3m046vz245ny76x"; depends=[Biobase fdrtool genefilter GSEABase les]; };
   GSReg = derive2 { name="GSReg"; version="1.15.0"; sha256="1qazhsx6gfnywwkhxip962v4jr5njbf97k36nbnq20q0yavwgzhz"; depends=[AnnotationDbi GenomicFeatures Homo_sapiens org_Hs_eg_db]; };
-  GSVA = derive2 { name="GSVA"; version="1.29.0"; sha256="1yay4qw83jfpg1sskh8aizwblj1cxvjb974s7hbrc9a8z0dlkcnn"; depends=[Biobase BiocGenerics geneplotter GSEABase shiny shinythemes]; };
+  GSVA = derive2 { name="GSVA"; version="1.29.3"; sha256="12x52iq2c9y7y3hfza849754xf8z8ysh41dk0id7dy9mbjawvz7d"; depends=[Biobase BiocGenerics geneplotter GSEABase shiny shinythemes]; };
   GUIDEseq = derive2 { name="GUIDEseq"; version="1.11.0"; sha256="1qxb0mrrldyac16zfzkqcy11750hakr4hgqm8ai1cabr6xd5yna1"; depends=[BiocGenerics BiocParallel Biostrings BSgenome ChIPpeakAnno CRISPRseek data_table GenomeInfoDb GenomicAlignments GenomicRanges hash IRanges limma matrixStats Rsamtools S4Vectors]; };
-  GWASTools = derive2 { name="GWASTools"; version="1.27.1"; sha256="1w0magisa8rv0s1kppppas3lacrkmkg7finjc3bja1dh3npd1v5j"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; };
+  GWASTools = derive2 { name="GWASTools"; version="1.27.3"; sha256="0snjz7vqfq5izfk68z3r7d0356almksxbsc79m2ryk7mkfjfw5bx"; depends=[Biobase DBI DNAcopy gdsfmt GWASExactHW lmtest logistf quantsmooth RSQLite sandwich survival]; };
   GateFinder = derive2 { name="GateFinder"; version="1.1.0"; sha256="1blj8407nl6nsn8dyg31xj4ii8rr2rfkg35g1hf97j60dk53bmwf"; depends=[diptest flowCore flowFP mvoutlier splancs]; };
   GenRank = derive2 { name="GenRank"; version="1.9.0"; sha256="05g9mram44zs76m48rvplwdhdlhkygfxrzgdsd43was2xvyj6nvb"; depends=[matrixStats reshape2 survcomp]; };
   GenVisR = derive2 { name="GenVisR"; version="1.13.2"; sha256="1ca47n9ddnm20vjj7070wfmmd9ff8w58d5rd79sq23hszmzwyzlf"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome data_table DBI FField GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra gtable gtools IRanges plyr reshape2 Rsamtools scales VariantAnnotation viridis]; };
-  GeneAnswers = derive2 { name="GeneAnswers"; version="2.23.0"; sha256="08fgg33yls55357a45zfcghk87z7z2lqzh8wfiina122yg29c7ss"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; };
-  GeneBreak = derive2 { name="GeneBreak"; version="1.11.0"; sha256="1nw97k4cxd7l35r14jq5mf46wa4rlfm2zg28x176z6wh0jlz4gba"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; };
+  GeneAccord = derive2 { name="GeneAccord"; version="0.99.13"; sha256="1rw3wrgvqxznia7p0vm55dkq5rfks1gq5nixcf4ljzd9kcwc4ggs"; depends=[biomaRt caTools dplyr ggplot2 ggpubr gtools magrittr maxLik RColorBrewer reshape2 tibble]; };
+  GeneAnswers = derive2 { name="GeneAnswers"; version="2.23.1"; sha256="0nxilnnhb48jwbplwhndwd8y5rlmhyjfjywc1whcij3hz9f6yzp9"; depends=[annotate Biobase downloader Heatplus igraph MASS RBGL RColorBrewer RCurl RSQLite XML]; };
+  GeneBreak = derive2 { name="GeneBreak"; version="1.11.1"; sha256="0pyvj6grznl5qjki857zfhqcn05xwhicm6l1jxa1jc0aav91y764"; depends=[CGHbase CGHcall GenomicRanges QDNAseq]; };
   GeneExpressionSignature = derive2 { name="GeneExpressionSignature"; version="1.27.0"; sha256="0bmhxzrg5d7v4lv4k2igl7ah8fncrggyziwqyhawavig17i1iqzc"; depends=[Biobase PGSEA]; };
   GeneGA = derive2 { name="GeneGA"; version="1.31.0"; sha256="0fdfb6x7rjg4ak5xbikwj6fmmrnr3hnsi97amn69w81087228b5g"; depends=[hash seqinr]; };
   GeneGeneInteR = derive2 { name="GeneGeneInteR"; version="1.7.0"; sha256="03kkfv7vj717brzdw346yapxfg414v84wncqqrv3si03q4w450mz"; depends=[data_table FactoMineR GenomicRanges GGtools igraph IRanges kernlab mvtnorm plspm rioja Rsamtools snpStats]; };
   GeneMeta = derive2 { name="GeneMeta"; version="1.53.0"; sha256="18f1nca21drjpv55b4d92zkgqr3zqhzp98slq6xfqvsj3rip6y5v"; depends=[Biobase genefilter]; };
-  GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.23.0"; sha256="1076pgsykk88dswza9m1bbh1nzvb5l1680h0q971vdvy1z1sks4c"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; };
+  GeneNetworkBuilder = derive2 { name="GeneNetworkBuilder"; version="1.23.2"; sha256="1nikjknsfy99i3b3r384gjlw8rzk4wv1wqflwpnrnffvzxh3sr5d"; depends=[graph htmlwidgets plyr Rcpp Rgraphviz rjson XML]; };
   GeneOverlap = derive2 { name="GeneOverlap"; version="1.17.0"; sha256="0dqsq1sd1ly6gvnpq3xcv9idr30kazx97jha9icv1g64d337l289"; depends=[gplots RColorBrewer]; };
   GeneRegionScan = derive2 { name="GeneRegionScan"; version="1.37.0"; sha256="1672nriz5r0gpgb6c9bsa864ap3ap68n1igvpf9q8mf3sw659m3b"; depends=[affxparser Biobase Biostrings RColorBrewer S4Vectors]; };
   GeneSelectMMD = derive2 { name="GeneSelectMMD"; version="2.25.0"; sha256="1lwszjpxp9bj0hd5z1kasq2qv49swji3ib1ljlph22wh0j9jimid"; depends=[Biobase limma MASS survival]; };
-  GeneSelector = derive2 { name="GeneSelector"; version="2.31.0"; sha256="134l462i60mym5k4z46nfx1f7r2r0fa069v1jddrjfmcv3v0gbs8"; depends=[Biobase limma multtest samr siggenes]; };
+  GeneSelector = derive2 { name="GeneSelector"; version="2.31.2"; sha256="1z346x227rs0nlyzf1idmcb2s05fhp68i3cjiib2d2328fs0yzyw"; depends=[Biobase limma multtest samr siggenes]; };
   GeneStructureTools = derive2 { name="GeneStructureTools"; version="1.1.0"; sha256="0w8ydly5qi8cvdhhda2q3k8fj9k9v1sg3c45h4ki02vx19j2kap0"; depends=[Biostrings BSgenome_Mmusculus_UCSC_mm10 data_table GenomicRanges Gviz IRanges plyr rtracklayer S4Vectors stringdist stringr]; };
   GeneticsDesign = derive2 { name="GeneticsDesign"; version="1.49.0"; sha256="1n9d1i45dcmp2irnsc5ak9pk33r68nzd84iixylwaj302l7yphjs"; depends=[gmodels gtools mvtnorm]; };
   GeneticsPed = derive2 { name="GeneticsPed"; version="1.43.1"; sha256="0agd99r4jhp4y2ix5qrbwrycy3r8pc1cwa09ib3mhg5jdszm6jr8"; depends=[gdata genetics MASS]; };
-  GenoGAM = derive2 { name="GenoGAM"; version="1.9.0"; sha256="02f7xvsv4l27dqj6cxm363n67kkbyz26z36gl4mybcgivvdvmi6h"; depends=[BiocParallel Biostrings data_table DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges IRanges mgcv reshape2 Rsamtools S4Vectors SummarizedExperiment]; };
+  GenoGAM = derive2 { name="GenoGAM"; version="1.99.0"; sha256="18s3hh2gis61sakld098ffpihy2fd11sia94cxxq9cy0wl49bzci"; depends=[BiocParallel Biostrings data_table DelayedArray DESeq2 futile_logger GenomeInfoDb GenomicAlignments GenomicRanges HDF5Array IRanges Matrix Rcpp RcppArmadillo rhdf5 Rsamtools S4Vectors sparseinv SummarizedExperiment]; };
   GenomeGraphs = derive2 { name="GenomeGraphs"; version="1.41.0"; sha256="07vwj2pbrxgj3k673m8xrf3cpqc1g753fvj950qwmy4jmz6s8w04"; depends=[biomaRt]; };
-  GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.17.1"; sha256="1ck578vgv3ya4kgdacxspiqrx8150zic0va745f98gafx2cv7b66"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; };
-  GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.17.2"; sha256="0n3rl6mlyn1q4rjbjh8dlbq7sy192jc2zy3y4qlaacmmfrw4sv5h"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
-  GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.5.3"; sha256="0nagrdckv853kfqrajs8jr2zhmmipnw36nsa8nr796y6q7ldq492"; depends=[dplyr GenomicRanges httr IRanges jsonlite lazyeval magrittr rappdirs readr S4Vectors SummarizedExperiment xml2]; };
-  GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.33.0"; sha256="1dnj1drlly4ac6q29zycvyjaw50fl6l1iqwhsn5syvywb5ccmgh5"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; };
-  GenomicFiles = derive2 { name="GenomicFiles"; version="1.17.0"; sha256="08zjr3x7sn5fpqfl021vc8imdprd18hanyq7c2gwn5r0y30cyxrp"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; };
-  GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.15.0"; sha256="0p2nsfwfxkl16iwv5apaikd6abbi21czdy7wh9kkyb4frh2938yd"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; };
-  GenomicRanges = derive2 { name="GenomicRanges"; version="1.33.6"; sha256="07allayr8aflgra393xikfd5zs1s8b2yrsw308dqdxjyc0i3497i"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; };
-  GenomicScores = derive2 { name="GenomicScores"; version="1.5.1"; sha256="1pkisnqp2rwdyxxm5504107scc0kds0ry07xmx451bn1i52lg3n1"; depends=[AnnotationHub Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors XML]; };
-  GenomicTuples = derive2 { name="GenomicTuples"; version="1.15.1"; sha256="1xin5m11q94w64kcb6aqsi422cgbcagb0g45ir90dqf9d79v8vjz"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; };
+  GenomeInfoDb = derive2 { name="GenomeInfoDb"; version="1.17.4"; sha256="1kma1ywai2l8lknng1hpp5nxgv45rwiih0ac9nxmg5ydb910m2z0"; depends=[BiocGenerics GenomeInfoDbData IRanges RCurl S4Vectors]; };
+  GenomicAlignments = derive2 { name="GenomicAlignments"; version="1.17.3"; sha256="17kdllb2griy85qdk8nkx1qislc424kpibsrfb2pirf6xjm82rxn"; depends=[BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors SummarizedExperiment]; };
+  GenomicDataCommons = derive2 { name="GenomicDataCommons"; version="1.5.8"; sha256="0gp8izsk2kb2adv8ykmsjzba39lbkw02061f5j82ysvgzmb2gh16"; depends=[dplyr GenomicRanges httr IRanges jsonlite lazyeval magrittr rappdirs readr S4Vectors SummarizedExperiment xml2]; };
+  GenomicFeatures = derive2 { name="GenomicFeatures"; version="1.33.6"; sha256="0qq5yh524qxd3qa9i10niqk3aw4ff7b6xfr10041gk1r94l7apyv"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings DBI GenomeInfoDb GenomicRanges IRanges RCurl RSQLite rtracklayer S4Vectors XVector]; };
+  GenomicFiles = derive2 { name="GenomicFiles"; version="1.17.4"; sha256="160mnxz41wzlqigc9r40pkn5jc0raa84y1yjiyhj1406fv2aaj6n"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; };
+  GenomicInteractions = derive2 { name="GenomicInteractions"; version="1.15.1"; sha256="0jga57bna3fbfrzp9525mzp9c6amy8i6i1j65vf3l7hw75d8q20z"; depends=[Biobase BiocGenerics data_table dplyr GenomeInfoDb GenomicRanges ggplot2 gridExtra Gviz igraph InteractionSet IRanges Rsamtools rtracklayer S4Vectors stringr]; };
+  GenomicRanges = derive2 { name="GenomicRanges"; version="1.33.14"; sha256="1vmvmrd65dxhm06r879kqmncs9f4sg5z70fi0409b2078ia4qiyp"; depends=[BiocGenerics GenomeInfoDb IRanges S4Vectors XVector]; };
+  GenomicScores = derive2 { name="GenomicScores"; version="1.5.6"; sha256="1fyich4fdz3pfxi95mdz6mmnva9kb7ak5wslzlh6sar62cfk17mx"; depends=[AnnotationHub Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges S4Vectors XML]; };
+  GenomicTuples = derive2 { name="GenomicTuples"; version="1.15.2"; sha256="0hgnz5f5d3wh54icj36v6j06q87w19acnyd696aw78fk590mkvs5"; depends=[BiocGenerics data_table GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; };
   Genominator = derive2 { name="Genominator"; version="1.35.0"; sha256="0qvzw9r8hn19gzkj6r94v4787h9lbw8y2s9k7zasn2cdyx55074i"; depends=[BiocGenerics DBI GenomeGraphs IRanges RSQLite]; };
   Glimma = derive2 { name="Glimma"; version="1.9.2"; sha256="1njcjla1az23lrg5j93s1hxjrrjsf808plmvdhiai14fdlgzfb8w"; depends=[edgeR jsonlite S4Vectors]; };
-  GlobalAncova = derive2 { name="GlobalAncova"; version="3.49.0"; sha256="0y71r0biivxpyrjkl2132ngnz1fl5byi7rbig9g0j5svsmh9kk48"; depends=[annotate AnnotationDbi corpcor globaltest]; };
-  GoogleGenomics = derive2 { name="GoogleGenomics"; version="2.3.0"; sha256="10iwh4z3zpv8x239y8i5qpp88ygyg4fiyhsgpyld11fg3d1qkn4h"; depends=[Biobase Biostrings GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges rjson Rsamtools S4Vectors VariantAnnotation]; };
+  GlobalAncova = derive2 { name="GlobalAncova"; version="3.99.3"; sha256="1d38kp53qw25g2pdsiz4g38nm5hjr537i6ly7lvabvh5zim7h0bn"; depends=[annotate AnnotationDbi Biobase corpcor dendextend globaltest GSEABase VGAM]; };
+  GoogleGenomics = derive2 { name="GoogleGenomics"; version="2.3.2"; sha256="00qf7zadaryylkkizfdaapdppzxkfwdzwkv4qxkvwz1pkvr1yc5r"; depends=[Biobase Biostrings GenomeInfoDb GenomicAlignments GenomicRanges httr IRanges rjson Rsamtools S4Vectors VariantAnnotation]; };
   GraphAT = derive2 { name="GraphAT"; version="1.53.0"; sha256="0wsn0nfj4qds2kxm3gxfx8wwyf00l0ifvk660czm7zc6ppfj1sb8"; depends=[graph MCMCpack]; };
   GraphAlignment = derive2 { name="GraphAlignment"; version="1.45.0"; sha256="0mdy8g3i4b7wy9zqfbb1zia1h84kv2av4yl6japzz5ymiipjaimy"; depends=[]; };
-  GraphPAC = derive2 { name="GraphPAC"; version="1.23.0"; sha256="1wy20xjw6ikdjd66pk654dj5zcaxm2mn8vnwxr6s628x9c70rh0w"; depends=[igraph iPAC RMallow TSP]; };
+  GraphPAC = derive2 { name="GraphPAC"; version="1.23.1"; sha256="1xr4ys2ckzyc8w5c3pmywp341viac9xv9hz691lgm61krafyh370"; depends=[igraph iPAC RMallow TSP]; };
   GreyListChIP = derive2 { name="GreyListChIP"; version="1.13.0"; sha256="0m9qvb3rw1hr119vq2k5fdbywq8vfgfhxwm6r9nfmxdhdir6178j"; depends=[BSgenome GenomeInfoDb GenomicAlignments GenomicRanges MASS Rsamtools rtracklayer SummarizedExperiment]; };
   Guitar = derive2 { name="Guitar"; version="1.19.0"; sha256="0khy7vhr8r56r14kiqz83py227jaji46aqlqs8yhj7kh6cgh59c5"; depends=[GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges Rsamtools rtracklayer]; };
   Gviz = derive2 { name="Gviz"; version="1.25.0"; sha256="0c64bn8dqvcwi3jdfx0yg2jc7x1v41h4py7ily9z82ms8lfv7jh8"; depends=[AnnotationDbi Biobase BiocGenerics biomaRt Biostrings biovizBase BSgenome digest GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges lattice latticeExtra matrixStats RColorBrewer Rsamtools rtracklayer S4Vectors XVector]; };
-  HDF5Array = derive2 { name="HDF5Array"; version="1.9.4"; sha256="1ld8fm7zvd3kzrqynx3q8vzcbn1k82lim1fnhz449x4gxi6gddpg"; depends=[BiocGenerics DelayedArray IRanges rhdf5 S4Vectors]; };
-  HDTD = derive2 { name="HDTD"; version="1.15.0"; sha256="00zrdmpscbycmlli7qvx6vdy7nyckxfazylrx83qaffg9d7a9wc4"; depends=[Rcpp RcppArmadillo]; };
+  HDF5Array = derive2 { name="HDF5Array"; version="1.9.19"; sha256="01421q7hz1kmj4s4iwzb01ibq3ssz3sh67smg0ap52d1ykqqx8mx"; depends=[BiocGenerics DelayedArray IRanges rhdf5 S4Vectors]; };
+  HDTD = derive2 { name="HDTD"; version="1.15.1"; sha256="08h1wnsacr74ynjwn4aw98lwf9pjf081g1yi4557xb7cfzf4l6pn"; depends=[Rcpp RcppArmadillo]; };
   HELP = derive2 { name="HELP"; version="1.39.0"; sha256="1sb43vndrk5qbazxwx3n0lmkb43525vmarj3hbkqplid5bppcddp"; depends=[Biobase]; };
   HEM = derive2 { name="HEM"; version="1.53.0"; sha256="090k94d4bfmf1fqbxhlp2vb70x7934xwq8fjmgc2wlrq5d1iqjff"; depends=[Biobase]; };
-  HIBAG = derive2 { name="HIBAG"; version="1.17.1"; sha256="1raldjan5w9fvvk0hrwydyb1j6rs3566ks07nhym16f7bzrml85b"; depends=[]; };
+  HIBAG = derive2 { name="HIBAG"; version="1.17.2"; sha256="08fdgnrzx113cqk7v6wv7kfj13lhg2j4f86ap4ily1wirbb0q8y2"; depends=[]; };
+  HIREewas = derive2 { name="HIREewas"; version="0.99.8"; sha256="1df575f0fld051il5cpz27syvfmm70idvhr2af82r2lqbzz4ik8v"; depends=[gplots quadprog]; };
   HMMcopy = derive2 { name="HMMcopy"; version="1.23.0"; sha256="1ciawdh971fwfa60lb1469pqgmw9giyqksqk5zkfbal967pia1ck"; depends=[geneplotter IRanges]; };
+  HPAanalyze = derive2 { name="HPAanalyze"; version="0.99.19"; sha256="1s5inkcpsga791ranlf7c3bbdq42s05h4q7ba465lym685gpz18l"; depends=[cowplot dplyr ggplot2 hpar magrittr readr reshape2 tibble tidyr XLConnect xml2]; };
   HTSFilter = derive2 { name="HTSFilter"; version="1.21.0"; sha256="1c85v66fax6h00dkny5308mv1vsdinj590x6w4aghd6b4nb16qgr"; depends=[Biobase BiocParallel DESeq DESeq2 edgeR]; };
   HTSanalyzeR = derive2 { name="HTSanalyzeR"; version="2.33.0"; sha256="10agvn6dcmzczj5xdpviisnamfs6642xskh7zgh14c0p13gv76xs"; depends=[AnnotationDbi biomaRt BioNet cellHTS2 graph GSEABase igraph RankProd]; };
   HTSeqGenie = derive2 { name="HTSeqGenie"; version="4.11.0"; sha256="0k6ql5pkn2yjvmf13g4lzrqb0jcnp0rqsvakkqmirpj2b40wynj1"; depends=[BiocGenerics BiocParallel Biostrings Cairo chipseq GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges gmapR hwriter IRanges Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment VariantAnnotation VariantTools]; };
   HTqPCR = derive2 { name="HTqPCR"; version="1.35.0"; sha256="09wc412znd92fi3lm909mrz3xd9cjiwiw6b0ncki1yc186faizr4"; depends=[affy Biobase gplots limma RColorBrewer]; };
-  Harman = derive2 { name="Harman"; version="1.9.0"; sha256="1kcv48g1fwh36xdw8cx0v28n4dl9s4414vwa0alnwdy2j0b9n8qk"; depends=[Rcpp]; };
+  Harman = derive2 { name="Harman"; version="1.9.1"; sha256="1nk5szn0zgw1301m6jn9kr6qp3z1766a2nzp8sp9x6fnigc7zmsi"; depends=[Rcpp]; };
   Harshlight = derive2 { name="Harshlight"; version="1.53.0"; sha256="0nlghc13lmhvsy06spvzhc7cihpzayli1iyid7h7ifa8zik6dz72"; depends=[affy altcdfenvs Biobase]; };
   Heatplus = derive2 { name="Heatplus"; version="2.27.0"; sha256="1fyz7272w2ixisvg0gsv30svppd6xd47r79xg1r1y2qy62q04bca"; depends=[RColorBrewer]; };
   HelloRanges = derive2 { name="HelloRanges"; version="1.7.0"; sha256="1h88zrvx3h4s7jsadyf3f3x6p0hbkn2f6smnkdmm7fva4lhlg7hl"; depends=[BiocGenerics Biostrings BSgenome docopt GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; };
-  HiCcompare = derive2 { name="HiCcompare"; version="1.3.0"; sha256="1kj8aqq4ddlsh3xnrzbj3hid67ai7p7d4hk2avxscicyrrskkq8w"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq S4Vectors]; };
+  HiCBricks = derive2 { name="HiCBricks"; version="0.99.16"; sha256="11rafxnh91mgl73xvqw83q9fhvm1gy6ma3c6r1xrwbjkwib5iam5"; depends=[BiocFileCache curl data_table digest GenomeInfoDb GenomicRanges ggplot2 IRanges R6 rappdirs RColorBrewer reshape2 rhdf5 S4Vectors scales stringr viridis]; };
+  HiCcompare = derive2 { name="HiCcompare"; version="1.3.2"; sha256="0mqslkc98yz8hhil6fapxwzs4qy5v784knnakkm01rz0sjpb8jbp"; depends=[BiocParallel data_table dplyr GenomicRanges ggplot2 gridExtra gtools InteractionSet IRanges KernSmooth mgcv pheatmap QDNAseq S4Vectors]; };
   HiTC = derive2 { name="HiTC"; version="1.25.0"; sha256="1mryn42bsvswb0gf027aw4qbrk57w8859zyvicymdi3d78pw8rmv"; depends=[Biostrings GenomeInfoDb GenomicRanges IRanges Matrix RColorBrewer rtracklayer]; };
-  HilbertCurve = derive2 { name="HilbertCurve"; version="1.11.1"; sha256="0mv3ijx5506wng7zs556k2ljb11si73f9109hg3i8jl5qcn5zdn9"; depends=[circlize GenomicRanges HilbertVis IRanges png]; };
-  HilbertVis = derive2 { name="HilbertVis"; version="1.39.0"; sha256="068jm0ls9ix06w4argkaldfrsx6fynywh0776ygn0iaxmcjm2fpb"; depends=[lattice]; };
+  HilbertCurve = derive2 { name="HilbertCurve"; version="1.11.2"; sha256="0kxl5ihmgvsafiwi576kgyz1g60a25w6r8m4g9w6pzdwcxzp871d"; depends=[circlize GenomicRanges HilbertVis IRanges png]; };
+  HilbertVis = derive2 { name="HilbertVis"; version="1.39.2"; sha256="1qmnv0m4ywcjwqljvs9kbif63cyr842lzsj2flh5f3bf7pha1s7f"; depends=[lattice]; };
   HilbertVisGUI = derive2 { name="HilbertVisGUI"; version="1.39.0"; sha256="1jq70si8q74jg22zg4gx4c6nbi8zszgiqrbc6cavn4v578fam3z1"; depends=[HilbertVis]; };
   HybridMTest = derive2 { name="HybridMTest"; version="1.25.0"; sha256="0g667li0fhf085ha9210xwj3r0sy7ks9lj5v8lpiyz48yi8w2nfn"; depends=[Biobase fdrtool MASS survival]; };
-  IHW = derive2 { name="IHW"; version="1.9.1"; sha256="0h7gpmcnlahclhplfmi89s3ai3syg1cdvv2mc6nrx9kq7dckl3xv"; depends=[BiocGenerics fdrtool lpsymphony slam]; };
-  IMAS = derive2 { name="IMAS"; version="1.5.0"; sha256="0lwn1kp5z488yryx8zzi0b5kdm5kzycdbpnn6lbx6ixjkhs26fkl"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; };
+  IHW = derive2 { name="IHW"; version="1.9.2"; sha256="10lwbvr33xsxxs0sy8skyym81gw4328xxwdkhhmz0cyqgy23k3jr"; depends=[BiocGenerics fdrtool lpsymphony slam]; };
+  IMAS = derive2 { name="IMAS"; version="1.5.1"; sha256="0p5rhnvkzms8bvwc5lhkgi8hyqsm82mdwmsk245xxrrjdn6ir6ff"; depends=[AnnotationDbi BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggfortify ggplot2 gridExtra IRanges IVAS lattice lme4 Matrix Rsamtools S4Vectors survival]; };
   IMMAN = derive2 { name="IMMAN"; version="1.1.0"; sha256="0sgyiq7wif4imq81qqgwhbrx54dr26gb22j79mzzjyprv8yxgdkj"; depends=[BiocFileCache Biostrings igraph seqinr STRINGdb]; };
   IMPCdata = derive2 { name="IMPCdata"; version="1.17.0"; sha256="0r5j70i1mdrpxjznmb6i561076n1vk1h371kvlxkb8y343ajz7sq"; depends=[rjson]; };
+  INDEED = derive2 { name="INDEED"; version="0.99.17"; sha256="0v9vx1zb3r6861h7zb2bg15a541q04v8k2pf3j0i8vd5az32knlv"; depends=[devtools glasso]; };
   INPower = derive2 { name="INPower"; version="1.17.0"; sha256="1ilqffcbaxwk54m297f4znhbphjjipjfd82554z4mwdrkf0cz2lw"; depends=[mvtnorm]; };
   INSPEcT = derive2 { name="INSPEcT"; version="1.11.0"; sha256="1na92547w6qn6dkhy3zp3gj1g3vr2y3kx6j78hnq0ch9l8k9s2c7"; depends=[Biobase BiocGenerics BiocParallel deSolve GenomicAlignments GenomicFeatures GenomicRanges IRanges preprocessCore pROC rootSolve Rsamtools S4Vectors]; };
   IONiseR = derive2 { name="IONiseR"; version="2.5.0"; sha256="0gn75w73ahyk3vm70vq003rlg1wsazfy7qygdp4dnq0g9qpz8dyy"; depends=[BiocGenerics BiocParallel Biostrings bit64 dplyr ggplot2 magrittr rhdf5 ShortRead stringr tibble tidyr XVector]; };
-  IPO = derive2 { name="IPO"; version="1.7.0"; sha256="096a1c2ybmki12kqj2y1njpjbsia4qqd3rmj851cmks9h33mxk8m"; depends=[BiocParallel CAMERA rsm xcms]; };
+  IPO = derive2 { name="IPO"; version="1.7.1"; sha256="0hgflvvy840y822bk3bm2sj8yqc8q3nipxxqa5j6if17w10icvvn"; depends=[BiocParallel CAMERA rsm xcms]; };
   IPPD = derive2 { name="IPPD"; version="1.29.0"; sha256="1gwsq17ipba4q7jby4hj7bwrpbfzach5spsvnb4571x7nr6yx7qg"; depends=[bitops digest MASS Matrix XML]; };
-  IRanges = derive2 { name="IRanges"; version="2.15.14"; sha256="1w12vvyfi53hr45xhl1vzsygig9vdzlxkkyjsylbwc9ny595pam7"; depends=[BiocGenerics S4Vectors]; };
+  IRanges = derive2 { name="IRanges"; version="2.15.19"; sha256="096d7hil68zhy2l2vhd0q5prkrzybbwl28fa00k7rbail5vh8r8v"; depends=[BiocGenerics S4Vectors]; };
   ISoLDE = derive2 { name="ISoLDE"; version="1.9.0"; sha256="111p1wxyn3kqx6gdnrl55jwnlnqfa98wljkiw4wqqf2cdrykb7pr"; depends=[]; };
   ITALICS = derive2 { name="ITALICS"; version="2.41.0"; sha256="1lj5n1xgq49xn8yv8q6lfg01hw8l4yc5ffc98falzhlcvqxhkvzc"; depends=[affxparser DBI GLAD ITALICSData oligo oligoClasses pd_mapping50k_xba240]; };
   IVAS = derive2 { name="IVAS"; version="2.1.0"; sha256="0ipw8834ag1j2qg3i5nnfcncrjpzhd2m5hzhn1bjpvhd357r1gn1"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel doParallel foreach GenomeInfoDb GenomicFeatures GenomicRanges ggfortify ggplot2 IRanges lme4 Matrix S4Vectors]; };
-  IWTomics = derive2 { name="IWTomics"; version="1.5.0"; sha256="0v5q1ywvgvcwlfh7a9krh06b1ad4i5kpnm67az81znliz3s2m60y"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; };
+  IWTomics = derive2 { name="IWTomics"; version="1.5.2"; sha256="1rmlr66mgg5nfm2b50g0a83ahs0xkkji1is930vjprrfcn6clmn2"; depends=[fda GenomicRanges gtable IRanges KernSmooth S4Vectors]; };
   Icens = derive2 { name="Icens"; version="1.53.0"; sha256="16cxm1i6ir74l2x80wsp544ykffy91m4fv8v283nki0hx434pkn7"; depends=[survival]; };
   IdMappingAnalysis = derive2 { name="IdMappingAnalysis"; version="1.25.0"; sha256="025zqjc36whlraq3hjz0p5dzj5m19y50clrlgrimrz4ag5bfmf2q"; depends=[Biobase boot mclust R_oo rChoiceDialogs RColorBrewer]; };
   IdMappingRetrieval = derive2 { name="IdMappingRetrieval"; version="1.29.0"; sha256="0fn8xp7ybpg0z3bnk9sab53y7kflzys0r1cvikyp5n8pfkrr95g2"; depends=[AffyCompatible biomaRt ENVISIONQuery R_methodsS3 R_oo rChoiceDialogs RCurl XML]; };
   IdeoViz = derive2 { name="IdeoViz"; version="1.17.0"; sha256="0yr7yisb9hr2jsdlv7m59p9kiaxssv6rj8x4rqzraaipd7cn0gcy"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges RColorBrewer rtracklayer]; };
   Imetagene = derive2 { name="Imetagene"; version="1.11.0"; sha256="1zswp6h2c9nn4p73knp4wsnbqv77gp86njzpxjvgqjmvfj57y8nc"; depends=[d3heatmap ggplot2 metagene shiny shinyBS shinyFiles shinythemes]; };
-  ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.9.0"; sha256="00v2dfzcxwffpss873j1i74vl1qgimdqamyx4gj4cqjv76qcdrqc"; depends=[Biobase data_table ggplot2 gplots gtools heatmaply httr pheatmap plotly preprocessCore R6 reshape2 rjson Rlabkey rmarkdown scales]; };
+  ImmuneSpaceR = derive2 { name="ImmuneSpaceR"; version="1.9.3"; sha256="1dlb8dklkizcbmy7kc8mgr8d60k59j1zwgdfs9lf2zlxmzqz44zv"; depends=[Biobase curl data_table ggplot2 gplots gtools heatmaply httr pheatmap plotly preprocessCore R6 reshape2 rjson Rlabkey rmarkdown scales]; };
   ImpulseDE = derive2 { name="ImpulseDE"; version="1.7.0"; sha256="0g34jfff5lsvzak21fdi2fdx9a2v0n1f2cmjsk62jkjzr9jpyp2f"; depends=[amap boot]; };
   ImpulseDE2 = derive2 { name="ImpulseDE2"; version="1.5.0"; sha256="1f9nymih6fwq6p53x9f7zjblkdrrj0f89w1lv9f8bdz1y4icn1y4"; depends=[Biobase BiocParallel circlize ComplexHeatmap cowplot DESeq2 ggplot2 knitr Matrix S4Vectors SummarizedExperiment]; };
-  InPAS = derive2 { name="InPAS"; version="1.13.0"; sha256="0hk6lr9sk4yvgj9pw0w48936lmgz478k5jfbh1jmybixgx9cnl7k"; depends=[AnnotationDbi Biobase BiocParallel BSgenome cleanUpdTSeq depmixS4 GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma preprocessCore S4Vectors seqinr]; };
+  InPAS = derive2 { name="InPAS"; version="1.13.1"; sha256="0wj459bay4ywq9aymdp2snw6fzhbrdfg80ya96z8kgprxvp2r21z"; depends=[AnnotationDbi Biobase BiocParallel BSgenome cleanUpdTSeq depmixS4 GenomeInfoDb GenomicFeatures GenomicRanges Gviz IRanges limma preprocessCore S4Vectors seqinr]; };
   InTAD = derive2 { name="InTAD"; version="1.1.0"; sha256="0pm720gl7apzbcqxd53gj4ynkglv4bb0xrzibcwbpwgsmi75g55c"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggpubr IRanges mclust MultiAssayExperiment qvalue rtracklayer S4Vectors SummarizedExperiment]; };
-  IntEREst = derive2 { name="IntEREst"; version="1.5.1"; sha256="1drlpx96rfdr94i3aqvwb839ivwb6y4kg1qqip6hh33shrh7hzf0"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; };
-  InterMineR = derive2 { name="InterMineR"; version="1.3.0"; sha256="0rsf9ssnzcsfynk3ifsn2g5hk8g8nlkli0x7b7p5x60w8pvawss4"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; };
-  InteractionSet = derive2 { name="InteractionSet"; version="1.9.1"; sha256="0zdsdqmym0s09fp724xfa53bfy5isnj4gpxwaircl6js44rdp0f2"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; };
-  IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.3.0"; sha256="015mjy0fcch4z3nsy5jvyl6jcc6zigvfh4s35nm3yjw2plg06jm4"; depends=[igraph knitr]; };
+  IntEREst = derive2 { name="IntEREst"; version="1.5.2"; sha256="0vm9bp8cp8igmxcsd8n8s9y5nmcm98fsj1albcn8p87iq2jgkvix"; depends=[BiocGenerics BiocParallel Biostrings DBI DESeq2 DEXSeq edgeR GenomicAlignments GenomicFeatures GenomicRanges IRanges RMySQL Rsamtools S4Vectors seqinr seqLogo SummarizedExperiment]; };
+  InterMineR = derive2 { name="InterMineR"; version="1.3.3"; sha256="0x8nlvffa4i4rnk7ib11a29f5cr4vmvc4hspm0gir186zqcg7dw8"; depends=[Biostrings GenomicRanges httr igraph IRanges RCurl RJSONIO S4Vectors sqldf SummarizedExperiment XML xml2]; };
+  InteractionSet = derive2 { name="InteractionSet"; version="1.9.5"; sha256="1dmk08y0416ffljinh16qvvnm7hifdbbfzpg59r9l0lqwgpkligk"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges Matrix Rcpp S4Vectors SummarizedExperiment]; };
+  IntramiRExploreR = derive2 { name="IntramiRExploreR"; version="1.3.0"; sha256="015mjy0fcch4z3nsy5jvyl6jcc6zigvfh4s35nm3yjw2plg06jm4"; depends=[FGNet igraph knitr]; };
+  IsoCorrectoR = derive2 { name="IsoCorrectoR"; version="0.99.3"; sha256="11py0fpn0lz62my2zfs1p5aahjjda259gnfwsa47jid6dx9lghw4"; depends=[dplyr magrittr pracma quadprog readr readxl stringr tibble WriteXLS]; };
   IsoGeneGUI = derive2 { name="IsoGeneGUI"; version="2.17.0"; sha256="0fx9zkvg8471kcyda3hvp7zjv6d1z1pr2sq5882xn1amhcjpwws1"; depends=[Biobase ff geneplotter goric Iso IsoGene jpeg multtest ORCME ORIClust orQA RColorBrewer Rcpp relimp tkrplot xlsx]; };
-  IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.3.1"; sha256="19pzz6airm4jghr699g2sx8d0m8sxplmgyy09508npwxq5kkw4rw"; depends=[Biostrings BSgenome cummeRbund DBI DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges plyr RColorBrewer reshape2 rtracklayer tximport VennDiagram]; };
-  JunctionSeq = derive2 { name="JunctionSeq"; version="1.11.0"; sha256="1pq098zb6ynsrxmvppjvh4ws642sry12hz1rsc53ph5n375blxga"; depends=[Biobase BiocGenerics BiocParallel DESeq2 genefilter geneplotter GenomicRanges Hmisc IRanges locfit plotrix Rcpp RcppArmadillo S4Vectors statmod stringr SummarizedExperiment]; };
+  IsoformSwitchAnalyzeR = derive2 { name="IsoformSwitchAnalyzeR"; version="1.3.10"; sha256="1r1y2fzhiv1r86jrd1miij164lq5pa6425shcd8jfza9igpnlmz6"; depends=[Biostrings BSgenome DBI DEXSeq dplyr DRIMSeq edgeR futile_logger GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges limma magrittr plyr RColorBrewer readr reshape2 rtracklayer stringr tximport VennDiagram]; };
+  JunctionSeq = derive2 { name="JunctionSeq"; version="1.11.2"; sha256="1hhfam0yfrwyjvkzsn5pnx2564zggzw2y9163g4sxjxr5a0y5ggb"; depends=[Biobase BiocGenerics BiocParallel DESeq2 genefilter geneplotter GenomicRanges Hmisc IRanges locfit plotrix Rcpp RcppArmadillo S4Vectors statmod stringr SummarizedExperiment]; };
   KCsmart = derive2 { name="KCsmart"; version="2.39.0"; sha256="1y5lrcl4inkdmbr9bma02j7g4r0my49jvc434mzgvjmv6zfilm4k"; depends=[BiocGenerics KernSmooth multtest siggenes]; };
-  KEGGREST = derive2 { name="KEGGREST"; version="1.21.1"; sha256="1kk89li0nzp0g8p3v69c8b8ijqia9rz45139f56kl7vfvrr8l7yd"; depends=[Biostrings httr png]; };
+  KEGGREST = derive2 { name="KEGGREST"; version="1.21.2"; sha256="1xbs8c2p4y0igwazh0iy7g0bsjqvrp76gdn3bfgvyig75x7fkiv0"; depends=[Biostrings httr png]; };
   KEGGgraph = derive2 { name="KEGGgraph"; version="1.41.0"; sha256="0sd2m80q2igal5qh03qcdjpcyi6rxk8w3mxgd9rjars6ykcj0g84"; depends=[graph XML]; };
-  KEGGprofile = derive2 { name="KEGGprofile"; version="1.23.0"; sha256="0y1whzp0q1hlrcg9qhba6fh5iimnqp6phvd7kl8phkyhi5zzsv9a"; depends=[AnnotationDbi biomaRt KEGG_db KEGGREST png RCurl TeachingDemos XML]; };
+  KEGGlincs = derive2 { name="KEGGlincs"; version="1.7.3"; sha256="0mrzrcg0327hgp11i704qiyc53pplzmjdwbjxx12pqwaxrrkfijf"; depends=[AnnotationDbi gtools hgu133a_db httr igraph KEGGgraph KEGGREST KOdata org_Hs_eg_db plyr RJSONIO XML]; };
+  KEGGprofile = derive2 { name="KEGGprofile"; version="1.23.2"; sha256="02yqlbav775sx6cipc93rnz2qrhay93k4vrgs9h4gcz949rchhwh"; depends=[AnnotationDbi biomaRt KEGG_db KEGGREST png RCurl TeachingDemos XML]; };
+  KinSwingR = derive2 { name="KinSwingR"; version="0.99.10"; sha256="1mj7bdqlg7rsxpha7x1wcjkkavcmnb9bdz92xigksip5qsdcs2r1"; depends=[BiocParallel data_table sqldf]; };
   LBE = derive2 { name="LBE"; version="1.49.0"; sha256="07r55w9f7a5fdp183rjx5f15jzkw73q6r7ra7drk887xylzmxvd0"; depends=[]; };
   LEA = derive2 { name="LEA"; version="2.3.0"; sha256="1k7zxl6aa09kr2gmh6lhg1hdb332fqggdi8hk4gbjcgsa533sqcc"; depends=[]; };
   LINC = derive2 { name="LINC"; version="1.9.0"; sha256="1295829apimwfiyhxzyl61wlabd7j18zdycrrai2f3d42005pfjw"; depends=[ape Biobase clusterProfiler DOSE ggplot2 ggtree gridExtra org_Hs_eg_db png Rcpp ReactomePA reshape2 sva]; };
   LMGene = derive2 { name="LMGene"; version="2.37.0"; sha256="1pkgkn12bgmamfcbdi5c352v92q31rzwcq69kh00z7wb07flcmf2"; depends=[affy Biobase multtest survival]; };
-  LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.7.1"; sha256="16agj2lk871hqnwjrwg59qxsblr7gb2pd5y5h734c2san34y09r3"; depends=[CAMERA xcms]; };
-  LOLA = derive2 { name="LOLA"; version="1.11.0"; sha256="1pgxwcbd0sdb9npq6sjvbjjlqq13750795m9ycjz3mg2989y4rn5"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; };
+  LOBSTAHS = derive2 { name="LOBSTAHS"; version="1.7.2"; sha256="1j14x79xmzxc64jr3k4mxhfsv20pwvzr253jnchywfagky8ad3a5"; depends=[CAMERA xcms]; };
+  LOLA = derive2 { name="LOLA"; version="1.11.1"; sha256="1dk4b0cc1kgqd0b171pigvk445hl82bsx8izxwlg86zgrgmsb0sx"; depends=[BiocGenerics data_table GenomicRanges IRanges reshape2 S4Vectors]; };
   LPE = derive2 { name="LPE"; version="1.55.0"; sha256="08pghdnq4l4zj21q3jz77x2hryjps1jk0rpdlv9kr207f535ww9l"; depends=[]; };
   LPEadj = derive2 { name="LPEadj"; version="1.41.0"; sha256="0sjhx44m1rfkhpq87996wc7n8axz2k8c4ni818rx78cqpha5ybjl"; depends=[LPE]; };
+  LRBaseDbi = derive2 { name="LRBaseDbi"; version="0.99.22"; sha256="0yvsj66hdxmw9nqysb0a7jih5fi8jp1fdaccrkjs7mkp3zz6hzpp"; depends=[AnnotationDbi Biobase DBI RSQLite]; };
   LVSmiRNA = derive2 { name="LVSmiRNA"; version="1.31.0"; sha256="0wgjvy0r0p254kr686nnvjdwbqhbq06q1izy2idh9aaa043swaqn"; depends=[affy Biobase BiocGenerics limma MASS quantreg SparseM vsn zlibbioc]; };
-  LedPred = derive2 { name="LedPred"; version="1.15.0"; sha256="1jbwxs9hcwqcm1dpn24jkq0xi8jyja9mq347frpn8vc1m08w4bjx"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; };
+  LedPred = derive2 { name="LedPred"; version="1.15.1"; sha256="0h2rw9mx67ilcm61z1m2ddwpvq53rzvn1kbsgzqdszx0r63gfkxm"; depends=[akima e1071 ggplot2 irr jsonlite plot3D plyr RCurl ROCR testthat]; };
   LineagePulse = derive2 { name="LineagePulse"; version="1.1.0"; sha256="00y0xcw89c1kdmcdj4pw620szrhxy2sykb7iblfbxz04cbj7vygs"; depends=[BiocParallel circlize ComplexHeatmap ggplot2 gplots knitr Matrix RColorBrewer SingleCellExperiment SummarizedExperiment]; };
   Linnorm = derive2 { name="Linnorm"; version="2.5.0"; sha256="013i53zmjgrkb4icgzp9mdmn7wqfm8r24izm6vifigczqphm0g0i"; depends=[amap apcluster ellipse fastcluster fpc ggdendro ggplot2 gmodels igraph limma MASS mclust Rcpp RcppArmadillo Rtsne statmod vegan zoo]; };
   LiquidAssociation = derive2 { name="LiquidAssociation"; version="1.35.0"; sha256="0ggrhgdlw44k0q5nddn60m91225xx4c58ydjgd98b4rz4a0l9qjy"; depends=[Biobase geepack org_Sc_sgd_db yeastCC]; };
-  Logolas = derive2 { name="Logolas"; version="1.5.0"; sha256="0h6pq0mp935ygm8pcnk4g9wxg9hcqnbssw6ar1kw59kcama062fs"; depends=[Biostrings ggplot2 gridBase LaplacesDemon SQUAREM]; };
+  Logolas = derive2 { name="Logolas"; version="1.5.1"; sha256="14db1h5caklijdn0g4hk89n6h82fd932j9sxfzw2smhkg3k71xhw"; depends=[Biostrings ggplot2 gridBase LaplacesDemon SQUAREM]; };
   LowMACA = derive2 { name="LowMACA"; version="1.11.2"; sha256="1ir6vfjiwjhi6hj6pzksh2wfrcsmhkd80zwc135md0gmxr5bhhw8"; depends=[BiocParallel Biostrings cgdsr data_table httr LowMACAAnnotation motifStack RColorBrewer reshape2 stringr]; };
-  LymphoSeq = derive2 { name="LymphoSeq"; version="1.9.0"; sha256="0s0hwgbxdmkpdp6mnvd181idg0n3z87wf4w0arjih1205n1hqsyw"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; };
-  M3C = derive2 { name="M3C"; version="1.3.3"; sha256="1h9f5syg4r435w5p5azgmyfmfaycqx0mmbs8jgz2hp3m04f8a967"; depends=[cluster dendextend doParallel doSNOW foreach ggplot2 Matrix matrixcalc NMF RColorBrewer Rtsne sigclust]; };
+  LymphoSeq = derive2 { name="LymphoSeq"; version="1.9.2"; sha256="1q0xs2d7lgg0vz2ca84kv1igaf48y42g94xxdxmi1nmpz901pr8a"; depends=[Biostrings circlize data_table dplyr ggplot2 ggtree ineq LymphoSeqDB msa phangorn plyr RColorBrewer reshape stringdist UpSetR VennDiagram]; };
+  M3C = derive2 { name="M3C"; version="1.3.991"; sha256="0wzg8rsfc1xgfdyl3l1y87cqvicpmj30ng45wfwp0d4vkd1llvqp"; depends=[cluster dendextend doParallel doSNOW foreach ggplot2 Matrix matrixcalc NMF RColorBrewer Rtsne sigclust survival]; };
   M3D = derive2 { name="M3D"; version="1.15.0"; sha256="1fdfahbdfx3csn27q61djp27a2w6jr9yl9hw6rakjnj7mk5s1xrj"; depends=[BiocGenerics BiSeq GenomicRanges IRanges Rcpp S4Vectors SummarizedExperiment]; };
-  M3Drop = derive2 { name="M3Drop"; version="1.7.0"; sha256="0w4vwlbaz68if7vanhr79nqg84cq9r60drrawc9c5c6gfcfzzjmz"; depends=[bbmle gplots numDeriv RColorBrewer statmod]; };
-  MADSEQ = derive2 { name="MADSEQ"; version="1.7.0"; sha256="00x1nbvf375nik8v12hwpbnn84l70j5jycv8kp37fn18909100lh"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; };
-  MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="1.1.2"; sha256="03inn8i0pragrph3nia1zvkjd5kr3iz5ggj2i1fm6ir9259c7n01"; depends=[Category clusterProfiler data_table DOSE ggExtra ggplot2 ggrepel ggsci GOstats gridExtra pathological pathview pheatmap png RColorBrewer reshape sva]; };
+  M3Drop = derive2 { name="M3Drop"; version="1.7.1"; sha256="1gscdkrnyk2qghkpidwj6abbxc53ivyxyc43297yja6hj73nz8mw"; depends=[bbmle gplots numDeriv RColorBrewer statmod]; };
+  MACPET = derive2 { name="MACPET"; version="1.1.4"; sha256="0g9adhig02s6r45ax7335i2zsq8r2319111c0ijp6c6y5z52rcrp"; depends=[BH bigmemory BiocParallel Biostrings futile_logger GenomeInfoDb GenomicAlignments GenomicRanges GEOquery gtools InteractionSet intervals IRanges knitr plyr rbamtools Rbowtie Rcpp Rsamtools rtracklayer S4Vectors ShortRead]; };
+  MADSEQ = derive2 { name="MADSEQ"; version="1.7.1"; sha256="1x8cfif8var04bdfgdws8zql33a67lf7r0kkalansy5w64wkjm8n"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 coda GenomeInfoDb GenomicAlignments GenomicRanges IRanges preprocessCore rjags Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation vcfR VGAM zlibbioc]; };
+  MAGeCKFlute = derive2 { name="MAGeCKFlute"; version="1.1.9"; sha256="1bx9nawmjf2bsnk8iilplph90hdipyqf8mw24cbaaivajnsk6cz0"; depends=[biomaRt clusterProfiler data_table DOSE ggExtra ggplot2 ggrepel ggsci gridExtra pathview pheatmap png RColorBrewer sva]; };
   MAIT = derive2 { name="MAIT"; version="1.15.0"; sha256="0z1wl9hxqcfy7nlwqccz244kljdjra58drlhjfvc38kiy4q7nsyg"; depends=[agricolae CAMERA caret class e1071 gplots MASS pls plsgenomics Rcpp xcms]; };
   MANOR = derive2 { name="MANOR"; version="1.53.2"; sha256="1ss77yxivvgv2nswdp5qbbjc21ghrnwvj3w33xj4zv79bdb92qga"; depends=[GLAD]; };
   MAST = derive2 { name="MAST"; version="1.7.2"; sha256="07v6gjlh645w60c5fq206lmm2qpld1qqirdszrnrz00zrxzrnpz0"; depends=[abind Biobase BiocGenerics data_table ggplot2 plyr reshape2 S4Vectors SingleCellExperiment stringr SummarizedExperiment]; };
   MBASED = derive2 { name="MBASED"; version="1.15.0"; sha256="19zn2xmarpiszs3jfmmlgc5nflc2gafbby3x68l38sich2jn1kix"; depends=[BiocGenerics BiocParallel GenomicRanges RUnit SummarizedExperiment]; };
   MBAmethyl = derive2 { name="MBAmethyl"; version="1.15.0"; sha256="19lgv7lcy5qc6xbsngqvfxbaqcyk3rz907983ngqa9magr7xy2r1"; depends=[]; };
   MBCB = derive2 { name="MBCB"; version="1.35.0"; sha256="0cmmyj0c13b47apdk04qqqfg35rywh5fa0d2inhi31lfvbfd8bcx"; depends=[preprocessCore tcltk2]; };
-  MBttest = derive2 { name="MBttest"; version="1.9.1"; sha256="1m99zma2zg070sr759y8gkmm1qwnswqapbhl175xf8kxma1gh4cb"; depends=[gplots gtools]; };
+  MBttest = derive2 { name="MBttest"; version="1.9.3"; sha256="1g443ynnk46blficdzygnksirfnwwgggl6d2j0jw0qfvkdsks2bz"; depends=[gplots gtools]; };
   MCRestimate = derive2 { name="MCRestimate"; version="2.37.0"; sha256="1b1cp4aan1wnzspihjm2snp16qjd3flr3ixx19mvsqzy5p38pf69"; depends=[Biobase e1071 golubEsets pamr randomForest RColorBrewer]; };
   MCbiclust = derive2 { name="MCbiclust"; version="1.5.0"; sha256="1zkxh6gax7rnp6n5dd6kwcljwds33fv5ps4crn41hzndllpbbc93"; depends=[AnnotationDbi BiocParallel cluster GGally ggplot2 GO_db org_Hs_eg_db scales WGCNA]; };
   MDTS = derive2 { name="MDTS"; version="1.1.2"; sha256="0q3v06za1wdkrzp711gs7awpk4dvrxj0xy6m5lzjyjz5qdd2nym5"; depends=[Biostrings DNAcopy GenomicAlignments GenomicRanges IRanges Rsamtools stringr]; };
-  MEAL = derive2 { name="MEAL"; version="1.11.3"; sha256="04s5gqmn2gd399ba7gj9968d5ryisi6hl7n75mrgns5zq7mb3q7s"; depends=[Biobase BiocGenerics DMRcate GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl permute S4Vectors SmartSVA SummarizedExperiment vegan]; };
-  MEDIPS = derive2 { name="MEDIPS"; version="1.33.0"; sha256="0c37ns7z4wgir91lhz36035nvp1vc886fardjn2p74bz5w90w16x"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; };
+  MEAL = derive2 { name="MEAL"; version="1.11.7"; sha256="11l3rbfwnh8yrbi33ii0mcmi63wgmhdwyffx8790gm3dj99l1626"; depends=[Biobase BiocGenerics DMRcate GenomicRanges ggplot2 Gviz IRanges isva limma matrixStats minfi missMethyl MultiDataSet permute S4Vectors SmartSVA SummarizedExperiment vegan]; };
+  MEDIPS = derive2 { name="MEDIPS"; version="1.33.3"; sha256="0a2jypw2k9kpdh86gvgchvqlww72gb55aw9vhz67dkd7mfwnsqyc"; depends=[biomaRt Biostrings BSgenome DNAcopy edgeR GenomicRanges gtools IRanges preprocessCore Rsamtools rtracklayer]; };
   MEDME = derive2 { name="MEDME"; version="1.41.0"; sha256="1l0i3vz1zp9lmvvfn5h6baf9kzvdyb9m1qffwlg3dvzdzdqadx0l"; depends=[Biostrings drc MASS]; };
-  MEIGOR = derive2 { name="MEIGOR"; version="1.15.0"; sha256="0ch31d8g993ikz7dklzfh9mfn1cv8wv7k3nihdspqvbm37m8c0v1"; depends=[CNORode deSolve Rsolnp snowfall]; };
-  MGFM = derive2 { name="MGFM"; version="1.15.0"; sha256="08qgxz6aglxgzrbmxmay1xg402vw0a4yp86ifb5p0bwaniiv6k72"; depends=[annotate AnnotationDbi]; };
+  MEIGOR = derive2 { name="MEIGOR"; version="1.15.1"; sha256="1vfklcm9yppy3rr2l5ddnp20r368hsr08vy26agr5jqharw7qik9"; depends=[CNORode deSolve Rsolnp snowfall]; };
+  MGFM = derive2 { name="MGFM"; version="1.15.1"; sha256="1pd7c9d66c4b1bz6l24mhrwxwdivl47kc57c7mp79z1h9hf66ipf"; depends=[annotate AnnotationDbi]; };
   MGFR = derive2 { name="MGFR"; version="1.7.0"; sha256="11vw9yyv6j2pjj4cmlw0f3blxz4iwx3p9r0xpzis5zs12x7pn17f"; depends=[annotate biomaRt]; };
-  MIGSA = derive2 { name="MIGSA"; version="1.5.0"; sha256="1n4gh139cp05ahqjd3hyj2pzj9p0pyqhbwhsyg208mlm1arkdyxg"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz RJSONIO vegan]; };
+  MIGSA = derive2 { name="MIGSA"; version="1.5.2"; sha256="02yqj1srxh41wmda686y0nh88rnvmffr5f6p46h7vmz8kb1pi9cf"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel data_table edgeR futile_logger ggdendro ggplot2 GO_db GOstats graph GSEABase ismev limma matrixStats org_Hs_eg_db RBGL reshape2 Rgraphviz RJSONIO vegan]; };
   MIMOSA = derive2 { name="MIMOSA"; version="1.19.0"; sha256="1z3hj0ivv4zw4sprzr5bhxp5fpzkg37m1sk1y90cfm42p4vyqagg"; depends=[Biobase coda data_table Formula ggplot2 MASS MCMCpack modeest plyr pracma Rcpp RcppArmadillo reshape scales testthat]; };
-  MIRA = derive2 { name="MIRA"; version="1.3.0"; sha256="0wsgpmig3vz0iy7395a8091n5w5s5xmi709bd5pppdqw2zwhnmn6"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; };
+  MIRA = derive2 { name="MIRA"; version="1.3.1"; sha256="139wlx2c0bpgljjxrzrcn7s8kvqrs53lrw6nsdnb3v4y7wx2fc8y"; depends=[Biobase BiocGenerics bsseq data_table GenomicRanges ggplot2 IRanges S4Vectors]; };
   MLInterfaces = derive2 { name="MLInterfaces"; version="1.61.1"; sha256="1nmcxaa3r34xhzcs063pwggck2yhwvc1ckzyhqabbb41jflnnw3g"; depends=[annotate Biobase BiocGenerics cluster fpc gbm gdata genefilter ggvis hwriter MASS mlbench pls RColorBrewer rda rpart sfsmisc shiny threejs]; };
   MLP = derive2 { name="MLP"; version="1.29.0"; sha256="0fqrpnqb9031f3y1qgmvxr0ynygp1rzjg2dsy4g2z98jzwbncznk"; depends=[affy AnnotationDbi gdata gmodels gplots gtools plotrix]; };
-  MLSeq = derive2 { name="MLSeq"; version="1.99.8"; sha256="1h72lhvrvkpbl5dil3gk2kw6ax3xpycp87511a5ndzagnl2499js"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma plyr sSeq SummarizedExperiment xtable]; };
+  MLSeq = derive2 { name="MLSeq"; version="1.99.9"; sha256="0bjgj44j6xxipp6wskd1cq3kj2j9g3jl8365r9rv5m8vp58nvkl2"; depends=[Biobase caret DESeq2 edgeR foreach ggplot2 limma plyr sSeq SummarizedExperiment xtable]; };
   MMDiff2 = derive2 { name="MMDiff2"; version="1.9.0"; sha256="1l3frx6myj4jglypv5il3pgjpm3szq5xfp5p8k8xilahmg98ykh1"; depends=[Biobase Biostrings BSgenome GenomicRanges ggplot2 locfit RColorBrewer Rsamtools S4Vectors shiny]; };
   MODA = derive2 { name="MODA"; version="1.7.0"; sha256="0wm5sc2fh5j191128xlxdqmfsh8ix8k33gkcz6yn8rfpj3rdfhzg"; depends=[AMOUNTAIN cluster dynamicTreeCut igraph RColorBrewer WGCNA]; };
   MPFE = derive2 { name="MPFE"; version="1.17.0"; sha256="1jalc9ny5lv3h7awrkg5mmagjh15js5rmpqfl7pn15499186fajp"; depends=[]; };
-  MSGFgui = derive2 { name="MSGFgui"; version="1.15.0"; sha256="198lczhpgjlv0mq1k4rch4fm0gjm7g65j108ib69n5zbzkcqgbri"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; };
-  MSGFplus = derive2 { name="MSGFplus"; version="1.15.0"; sha256="19b61p8ihxni4psfrc7akgrq6aq28wzf73zp0bizwqfkv4lphm7l"; depends=[mzID ProtGenerics]; };
-  MSnID = derive2 { name="MSnID"; version="1.15.0"; sha256="167hjrp9zsa84swbrkmjaxc0haza02qzzfg64855rrf0m319g0v0"; depends=[Biobase data_table doParallel dplyr foreach iterators MSnbase mzID mzR ProtGenerics R_cache Rcpp reshape2]; };
-  MSnbase = derive2 { name="MSnbase"; version="2.7.1"; sha256="0gc1hysdd3ng6a0n3fqidrwgm2b3x4mlrccrxba5ank312i6f5iq"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp S4Vectors scales vsn XML]; };
-  MSstats = derive2 { name="MSstats"; version="3.13.4"; sha256="0vc36h2s1xmird1ghadw0v9r12gxh73xjmgbclfydg0q4i0x6762"; depends=[data_table doSNOW dplyr foreach ggplot2 ggrepel gplots limma lme4 marray MASS minpack_lm preprocessCore randomForest reshape2 snow stringr survival tidyr]; };
-  MSstatsQC = derive2 { name="MSstatsQC"; version="1.3.0"; sha256="1sp72cpks1cw3h6j9lzscs9lf9s9gl092h3jnxixkzf44cjlbxah"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics RecordLinkage]; };
-  MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.1.0"; sha256="1cr6l6axi7cqqb547dhsha7zdn85grgvvq2436skxws172pl0pv3"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly RecordLinkage shiny]; };
+  MPRAnalyze = derive2 { name="MPRAnalyze"; version="0.99.11"; sha256="0vqy590j0jfx00lifmavdvl6bd93k85kpm67575z3hd7lffrmawm"; depends=[BiocParallel progress SummarizedExperiment]; };
+  MSGFgui = derive2 { name="MSGFgui"; version="1.15.1"; sha256="01mdpd0ph49zjvhynb4cq8m60k1bd4xw72bay2ly19akp72lwcpz"; depends=[MSGFplus mzID mzR shiny shinyFiles xlsx]; };
+  MSGFplus = derive2 { name="MSGFplus"; version="1.15.1"; sha256="15ljj766719690mb37alih2001vcm8az92j0qgyfdb80c9gm8my6"; depends=[mzID ProtGenerics]; };
+  MSnID = derive2 { name="MSnID"; version="1.15.1"; sha256="08z17czddqlfj6hppqg43s45ldh3ck6qay14iyrpsa809xqda1yw"; depends=[Biobase data_table doParallel dplyr foreach iterators MSnbase mzID mzR ProtGenerics R_cache Rcpp reshape2]; };
+  MSnbase = derive2 { name="MSnbase"; version="2.7.12"; sha256="15vs3dca3ml859005wpwk84c0d1si0h65g9hnkvd0nw05wsp7g81"; depends=[affy Biobase BiocGenerics BiocParallel digest ggplot2 impute IRanges lattice MALDIquant MASS mzID mzR pcaMethods plyr preprocessCore ProtGenerics Rcpp S4Vectors scales vsn XML]; };
+  MSstats = derive2 { name="MSstats"; version="3.13.5"; sha256="06rhwn9fk5dr52p73mxi04x86s1c8ixvw3kw01qxygd6x0acshy4"; depends=[data_table doSNOW dplyr foreach ggplot2 ggrepel gplots limma lme4 marray MASS minpack_lm preprocessCore randomForest reshape2 snow stringr survival tidyr]; };
+  MSstatsQC = derive2 { name="MSstatsQC"; version="1.99.3"; sha256="1rbkn12pgy8g6s15lizaymkbc5k5cb07gndzy65w0zsbm2w5vaz4"; depends=[dplyr ggExtra ggplot2 MSnbase plotly qcmetrics RecordLinkage]; };
+  MSstatsQCgui = derive2 { name="MSstatsQCgui"; version="1.1.1"; sha256="0s3invrc3601y8hai3pxbd1k0v6vvr7n95zpbxj5cjqdv3yn52ir"; depends=[dplyr ggExtra gridExtra MSstatsQC plotly RecordLinkage shiny]; };
+  MSstatsTMT = derive2 { name="MSstatsTMT"; version="0.99.9"; sha256="08plgvwwhrjyby45gq5s4b3nxb53az6dayhgsk96fhxa3q7dbmds"; depends=[data_table dplyr ggplot2 limma lme4 matrixStats MSstats nlme reshape2 tidyr]; };
   MVCClass = derive2 { name="MVCClass"; version="1.55.0"; sha256="0xkwwvq66cnmac52ik95siq78ny9nfbgp4xncdamq7gmn7wasacr"; depends=[]; };
-  MWASTools = derive2 { name="MWASTools"; version="1.5.1"; sha256="015zdbmxlpv9y2qsg6ny59ljy8cn2vz4grmwa8dragr7pmivqikf"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; };
+  MWASTools = derive2 { name="MWASTools"; version="1.5.6"; sha256="1axhfzvinhg8lfgn703rl76bxj0b1dz0rmiapssqvzzm6bg8lgmf"; depends=[boot car ComplexHeatmap ggplot2 glm2 gridExtra igraph KEGGgraph KEGGREST ppcor qvalue RCurl SummarizedExperiment]; };
   MantelCorr = derive2 { name="MantelCorr"; version="1.51.0"; sha256="03sqqfi06hcprya25aj3p9sa35x9n2m9ffnplnh6gqmcv22fj75k"; depends=[]; };
   MassArray = derive2 { name="MassArray"; version="1.33.0"; sha256="1ni7dw8lk73n3b19m0rnd8cszb4p6la6msld0z63lgvih4m3z805"; depends=[]; };
   MassSpecWavelet = derive2 { name="MassSpecWavelet"; version="1.47.0"; sha256="0mq6xfdj11m49xi6x14lp6kh9idfbrmy9kx7jpjm90hwdjnl48ym"; depends=[waveslim]; };
   MatrixRider = derive2 { name="MatrixRider"; version="1.13.0"; sha256="0plcabv6wc7s4q7ippi7i9ckc3lg4pwxdm32gpsmmssff37jx41c"; depends=[Biostrings IRanges S4Vectors TFBSTools XVector]; };
-  MaxContrastProjection = derive2 { name="MaxContrastProjection"; version="1.5.0"; sha256="10hdj1kb9ywwgzf7nj7hzmh2hr5si6ps0h120nkdjmjscyd2sw26"; depends=[EBImage]; };
-  MeSHDbi = derive2 { name="MeSHDbi"; version="1.17.0"; sha256="1m73m7dgcl1n2rgb8c8qar65w18b1qq42n458yw3di88xly6wmb3"; depends=[AnnotationDbi Biobase BiocGenerics RSQLite]; };
+  MaxContrastProjection = derive2 { name="MaxContrastProjection"; version="1.5.1"; sha256="1ybz5ij152pdbnn47p5sprlm8lzdgzazv0h890dbh9z3k9b7vbli"; depends=[EBImage]; };
+  MeSHDbi = derive2 { name="MeSHDbi"; version="1.17.1"; sha256="1qxbpvl97j187bl9nqib6z580f692apdrsdw8qlpk1lw197sv7np"; depends=[AnnotationDbi Biobase BiocGenerics RSQLite]; };
   MeasurementError_cor = derive2 { name="MeasurementError.cor"; version="1.53.0"; sha256="0j6v368naid00b1igibjp94yxyz0sqhsr8lxgxv0xwy85ivsqlbi"; depends=[]; };
   MergeMaid = derive2 { name="MergeMaid"; version="2.53.0"; sha256="1dn5shrkyhph13x5qyygvp10jd8acs6rka9vr3g9dh0rq4mx4114"; depends=[Biobase MASS survival]; };
-  Mergeomics = derive2 { name="Mergeomics"; version="1.9.0"; sha256="1qs7jcgg5ah2iw6lcfwnp9lag5cah0d0gg9jk2qhrnqi22cjrymf"; depends=[]; };
-  MetCirc = derive2 { name="MetCirc"; version="1.11.0"; sha256="1v37sbd1c3m5mqyqlm7jcv1dascwwb1m9fm1cr2rn8r2whi9yfib"; depends=[amap circlize scales shiny]; };
-  MetaCyto = derive2 { name="MetaCyto"; version="1.3.2"; sha256="19kvmrzfakyjavd0y6j2ixzmlm070fdz6sygn0vczpdkqmir5vqd"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; };
+  Mergeomics = derive2 { name="Mergeomics"; version="1.9.1"; sha256="0gz7vx1gvng7dlkwfz45i1cpsdhazv9w5idbxjsh3rxwpll4yvd5"; depends=[]; };
+  MetCirc = derive2 { name="MetCirc"; version="1.11.3"; sha256="12f9cj5wzavd51kbyiz380fhb2zrlybakm4z7rnpvcx0g8q7l3y3"; depends=[amap circlize scales shiny]; };
+  MetID = derive2 { name="MetID"; version="0.99.8"; sha256="196ha93x99p7dhhwnr4b4xddkjjw2m1q30bn238msndz4l5chmri"; depends=[ChemmineR devtools igraph Matrix stringr]; };
+  MetNet = derive2 { name="MetNet"; version="0.99.24"; sha256="15gqzi23r7g43awk67qnqxlpgyq0zb9z06gq60kd0j05pwhfpgqz"; depends=[BiocParallel bnlearn mpmi parmigene ppcor rfPermute sna stabs WGCNA]; };
+  MetaCyto = derive2 { name="MetaCyto"; version="1.3.4"; sha256="0j97f77ailb5ih6ky3svcf7lmr6qk352p59mbx7rcxgg7fdajc0l"; depends=[cluster fastcluster flowCore FlowSOM ggplot2 metafor tidyr]; };
   MetaNeighbor = derive2 { name="MetaNeighbor"; version="1.1.0"; sha256="1jj4jh27ysl3ilhw20pf1srw0n47c0dbc3s760blwbf5qnrlhivv"; depends=[beanplot gplots RColorBrewer SummarizedExperiment]; };
   Metab = derive2 { name="Metab"; version="1.15.0"; sha256="12l43jyrsq1dcbbrkr6k66hrcwkx8ynyniz3cfs17im09nrj20jz"; depends=[pander svDialogs xcms]; };
-  MetaboSignal = derive2 { name="MetaboSignal"; version="1.11.0"; sha256="0cpmbq55d7bf9mky0m0ydg1qs60sxq8wl2apkhvnyfhifv3f316q"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools org_Hs_eg_db RCurl]; };
-  MethPed = derive2 { name="MethPed"; version="1.9.0"; sha256="0xi7s75ph09xi8f57hnmlfzr4xazj875wqc98dr198r5985sl99v"; depends=[Biobase randomForest]; };
+  MetaboSignal = derive2 { name="MetaboSignal"; version="1.11.0"; sha256="0cpmbq55d7bf9mky0m0ydg1qs60sxq8wl2apkhvnyfhifv3f316q"; depends=[AnnotationDbi biomaRt EnsDb_Hsapiens_v75 hpar igraph KEGGgraph KEGGREST MWASTools mygene org_Hs_eg_db RCurl]; };
+  MethPed = derive2 { name="MethPed"; version="1.9.1"; sha256="0x83lz61vn74z9nps99a0f8jh34impkm1523wzp0gr24gcmikb8y"; depends=[Biobase randomForest]; };
   MethTargetedNGS = derive2 { name="MethTargetedNGS"; version="1.13.0"; sha256="02kc184ql68rqll95sza94qnzjgh8wvg76h3z5r3lqmxdd7bblz9"; depends=[Biostrings gplots seqinr stringr]; };
   MethylAid = derive2 { name="MethylAid"; version="1.15.0"; sha256="15xkcbjj7mcmbm5di1bxslfiipnbdarsfsg16kmd530v9lmll331"; depends=[Biobase BiocGenerics BiocParallel ggplot2 gridBase hexbin matrixStats minfi RColorBrewer shiny SummarizedExperiment]; };
-  MethylMix = derive2 { name="MethylMix"; version="2.11.0"; sha256="1lm88i5b03i08s4dydmw7jjxp5qpn5nz72by74nqzc36m6ignk8k"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; };
-  MethylSeekR = derive2 { name="MethylSeekR"; version="1.21.0"; sha256="0zpd930n3vyv94yic8zjfgl68m3kr4z35ab5lzprjmpyy8hg7szn"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; };
+  MethylMix = derive2 { name="MethylMix"; version="2.11.2"; sha256="02wsil0s5jp6lh4jlh9sppz9ir8lk849jlxagj48s9napxbw65fc"; depends=[data_table digest foreach ggplot2 impute limma R_matlab RColorBrewer RCurl RPMM]; };
+  MethylSeekR = derive2 { name="MethylSeekR"; version="1.21.1"; sha256="18hcd43z15949vsd7s02zg85dpyf9gkc7dky70xz8jv8gbmizl56"; depends=[BSgenome geneplotter GenomicRanges IRanges mhsmm rtracklayer]; };
   Mfuzz = derive2 { name="Mfuzz"; version="2.41.0"; sha256="0hdjkg90kk7igjx26hfm9wfh7lymm0cgxsn263a7sy1cb6ld7nx8"; depends=[Biobase e1071 tkWidgets]; };
   MiChip = derive2 { name="MiChip"; version="1.35.0"; sha256="19w0kzyg6s950g0p4a4gdkkblsz30zv57rs3dqzqh1rgcrcb4gpf"; depends=[Biobase]; };
   MiPP = derive2 { name="MiPP"; version="1.53.0"; sha256="0ii5vlx5gwkz01ivg0qjml8q5zqdvz21rrxgqhx2zdqwi6cbfww0"; depends=[Biobase e1071 MASS]; };
-  MiRaGE = derive2 { name="MiRaGE"; version="1.23.0"; sha256="1inywp84lh8qwairxrb8cvql171mg4jrg66aqg0nhihqm0mjwnn5"; depends=[AnnotationDbi Biobase BiocGenerics S4Vectors]; };
+  MiRaGE = derive2 { name="MiRaGE"; version="1.23.3"; sha256="02nrjckzywcfm0b34f076qkpsaa9n6p57pjd9chhcnns0i7kl2ji"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager S4Vectors]; };
   MineICA = derive2 { name="MineICA"; version="1.21.0"; sha256="1n711vz5g1rrz6hnm88w3ycm0yczq4a0h2rg635g7x33sszjr3dk"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt cluster colorspace fastICA foreach fpc ggplot2 GOstats graph gtools Hmisc igraph JADE lumi lumiHumanAll_db marray mclust plyr RColorBrewer Rgraphviz scales xtable]; };
+  MinimumDistance = derive2 { name="MinimumDistance"; version="1.25.2"; sha256="1pv6h2p0y6r32dz99b61bdgyd86nnmzs7dph9xk7a5rrgzaj1bb8"; depends=[Biobase BiocGenerics data_table DNAcopy ff foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment VanillaICE]; };
   Mirsynergy = derive2 { name="Mirsynergy"; version="1.17.0"; sha256="0n8vspalfwisnfk486i90pxi2hd2xi32b36pfl3ifrpqyr2rylix"; depends=[ggplot2 gridExtra igraph Matrix RColorBrewer reshape scales]; };
   MmPalateMiRNA = derive2 { name="MmPalateMiRNA"; version="1.31.0"; sha256="10cdaprs899j3fswds8vx4gm2xp5kcx11l53ymxlyjr5592887fm"; depends=[Biobase lattice limma statmod vsn xtable]; };
-  MoPS = derive2 { name="MoPS"; version="1.15.0"; sha256="0bmxwf1i2szan2wn4gxmf4qskrsaydkkrbg7agmgzgbzhvb47dgs"; depends=[Biobase]; };
-  MoonlightR = derive2 { name="MoonlightR"; version="1.7.1"; sha256="040hkp66mr432762wkwyyhxpsqqrhkri06szl7wyfpmf3gmydj9i"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; };
+  MoPS = derive2 { name="MoPS"; version="1.15.1"; sha256="0nmk4iapypdak2z4zmlwv2crvgzh10l8vvajkiszwakdpsc734fd"; depends=[Biobase]; };
+  MoonlightR = derive2 { name="MoonlightR"; version="1.7.2"; sha256="1j2k09hcg5z65yxaml6yhxffsz3dmh56j64w625rqxmfk0b1zyii"; depends=[Biobase circlize clusterProfiler doParallel DOSE foreach GEOquery gplots HiveR limma parmigene randomForest RColorBrewer RISmed SummarizedExperiment TCGAbiolinks]; };
   MotIV = derive2 { name="MotIV"; version="1.37.0"; sha256="0wzf7dzw063i613gx8pa3sf1hvqc52yhb8dqpy87g3smalfj3qr3"; depends=[BiocGenerics Biostrings IRanges lattice rGADEM S4Vectors]; };
-  MotifDb = derive2 { name="MotifDb"; version="1.23.0"; sha256="1s0191bn7418bkl5zha6a99wnznznrndk13z8jhzjcpp4kk6m1f7"; depends=[BiocGenerics Biostrings IRanges rtracklayer S4Vectors splitstackshape]; };
+  MotifDb = derive2 { name="MotifDb"; version="1.23.14"; sha256="0v7n0682w9gsnp7vknhwfc6baimsjcqb5gm3bglnsp6kr4khjhkx"; depends=[BiocGenerics Biostrings IRanges rtracklayer S4Vectors splitstackshape]; };
   Mulcom = derive2 { name="Mulcom"; version="1.31.0"; sha256="0l8wn2ma3s55w86wv3779y39vsp45rfa5nkjj1cjn26qc2ay0r0f"; depends=[Biobase fields]; };
-  MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.7.14"; sha256="1wwi9dgf41zvkv2zkrx6wvk15zhml618mz3ki7gzshzp3p9wxwr7"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; };
+  MultiAssayExperiment = derive2 { name="MultiAssayExperiment"; version="1.7.22"; sha256="1pw80vr48jii32mxd8rwshi3q6ccr4c3x3fr0bxdkbf9ypa2l57j"; depends=[Biobase BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment tidyr]; };
+  MultiDataSet = derive2 { name="MultiDataSet"; version="1.9.1"; sha256="19j4jd5gh363l6p3jmjfcp14y1vmixg20lcpqjs78zxk1saalhz3"; depends=[Biobase BiocGenerics GenomicRanges ggplot2 ggrepel IRanges limma qqman S4Vectors SummarizedExperiment]; };
   MultiMed = derive2 { name="MultiMed"; version="2.3.0"; sha256="085vmkq1hd9x1za5c21gvndyl46ymd7w5hwixvhnsclzb4r7gav7"; depends=[]; };
-  MutationalPatterns = derive2 { name="MutationalPatterns"; version="1.7.0"; sha256="1iy96za3b31sm9kkbg6vf17a88pyhdk580yrhl580ggwjjkn3fz6"; depends=[BiocGenerics Biostrings cowplot GenomeInfoDb GenomicRanges ggdendro ggplot2 IRanges NMF plyr pracma reshape2 S4Vectors SummarizedExperiment VariantAnnotation]; };
-  NADfinder = derive2 { name="NADfinder"; version="1.5.0"; sha256="0wjnfi09d686ypifgqrn191hh8xgv7m87fnak84ss5ka9lwhii54"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; };
+  MutationalPatterns = derive2 { name="MutationalPatterns"; version="1.7.3"; sha256="1krq37chmnqzl9dlk6dwjy6kasa511s2qc8hndg5l0am12lmn5bg"; depends=[BiocGenerics Biostrings cowplot GenomeInfoDb GenomicRanges ggdendro ggplot2 IRanges NMF plyr pracma reshape2 S4Vectors SummarizedExperiment VariantAnnotation]; };
+  NADfinder = derive2 { name="NADfinder"; version="1.5.4"; sha256="0qgnpq9ci3344kjba8jfs6lbnrdhsyjvb5vxrd0p4v08j3fg4q55"; depends=[ATACseqQC baseline BiocGenerics corrplot csaw EmpiricalBrownsMethod GenomeInfoDb GenomicAlignments GenomicRanges IRanges limma metap rbamtools Rsamtools rtracklayer S4Vectors signal SummarizedExperiment trackViewer]; };
+  NBSplice = derive2 { name="NBSplice"; version="0.99.9"; sha256="181msya2wpcqsn3xyiqzghl58r394ilw5khmzihyq5b1bq3x7rmr"; depends=[BiocParallel car edgeR ggplot2 MASS mppa reshape2]; };
   NCIgraph = derive2 { name="NCIgraph"; version="1.29.0"; sha256="06jmifga56d9cnqp4wb9hm6g32fhsk6n0g70qqw1k4l5k7m2v5wv"; depends=[graph KEGGgraph R_methodsS3 RBGL RCy3]; };
-  NGScopy = derive2 { name="NGScopy"; version="1.15.0"; sha256="1b8190zyq3sixmvg9kw7jshxsyb2zicfm0w6qfgah0aq9jgb9gxz"; depends=[changepoint rbamtools Xmisc]; };
-  NOISeq = derive2 { name="NOISeq"; version="2.25.0"; sha256="18hz9g1p1kacb1f4b3sxfrp1gl6wk87p20d5580krrqk9a69al2n"; depends=[Biobase Matrix]; };
+  NGScopy = derive2 { name="NGScopy"; version="1.15.1"; sha256="0azw7zq7bz7haifmng9y59jbhh7nfhz6k886gffdvlnbrn3k4kbr"; depends=[changepoint rbamtools Xmisc]; };
+  NOISeq = derive2 { name="NOISeq"; version="2.25.1"; sha256="094jrp87nhjyi31qbg719ny0dqki5blf6k86d4sbh3vqngakcjg3"; depends=[Biobase Matrix]; };
   NTW = derive2 { name="NTW"; version="1.31.0"; sha256="183y8sqf3h4ik1cm6zhvzmijc8kanmv3lvqh4v4cb7qhvgrgb3ln"; depends=[mvtnorm]; };
   NanoStringDiff = derive2 { name="NanoStringDiff"; version="1.11.0"; sha256="0sl0chkrx8s4625ch43x9r8n5k7cd0y18cinafrligqfrwnc5yx0"; depends=[Biobase matrixStats Rcpp]; };
   NanoStringQCPro = derive2 { name="NanoStringQCPro"; version="1.13.0"; sha256="1km8i428rn4q5b89d56bcnwkrpvhf67bzmxwzxfdwm1qr956vab2"; depends=[AnnotationDbi Biobase knitr NMF org_Hs_eg_db png RColorBrewer]; };
   NarrowPeaks = derive2 { name="NarrowPeaks"; version="1.25.1"; sha256="1lqs0rcx52c3hnx89wngmyyhn02a7nf007x95z85rqzrclgy27ki"; depends=[BiocGenerics CSAR fda GenomeInfoDb GenomicRanges ICSNP IRanges S4Vectors]; };
-  NetPathMiner = derive2 { name="NetPathMiner"; version="1.17.0"; sha256="0p6syyn31nfx3qgw8yv6m7jry2prnjnf6pc9qf889407438q11cf"; depends=[igraph]; };
-  NetSAM = derive2 { name="NetSAM"; version="1.21.0"; sha256="15crfdd8a7wlmn3vmwqxzfihaph64lay7k75dx5mjwswp01w5g37"; depends=[graph igraph seriation]; };
-  NormqPCR = derive2 { name="NormqPCR"; version="1.27.0"; sha256="1481sv255pq76scmbwvw66blknww2w8d9c4md4gmsgkifwnwvqjf"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; };
+  NeighborNet = derive2 { name="NeighborNet"; version="0.99.5"; sha256="1xwpzkfmhgiswwyls5q9cm8qnz7xvp3axhm95cvwfqxwbp8j81mc"; depends=[graph]; };
+  NetPathMiner = derive2 { name="NetPathMiner"; version="1.17.1"; sha256="0hfdi6359vl27m5fa8fr9pr4xw8pqdx3qjbw6laigylapn8vwy6n"; depends=[igraph]; };
+  NetSAM = derive2 { name="NetSAM"; version="1.21.1"; sha256="0h1wld8p7pvyf7jfgcdgykg34dccf7ykrfc7jqv0i5aip4zjxpd0"; depends=[graph igraph seriation]; };
+  NormalyzerDE = derive2 { name="NormalyzerDE"; version="0.99.25"; sha256="00x86np9265klpvzv72xcdnnqfkaa1ygja4hrlpx3iaz9r2x3k4z"; depends=[ape Biobase car ggplot2 limma MASS matrixStats preprocessCore raster RcmdrMisc SummarizedExperiment vsn]; };
+  NormqPCR = derive2 { name="NormqPCR"; version="1.27.2"; sha256="18bsw0hp7m48vh85ajyxhp447agrzhs5x0jy4684p77xrlhqfmqz"; depends=[Biobase qpcR RColorBrewer ReadqPCR]; };
   NuPoP = derive2 { name="NuPoP"; version="1.31.0"; sha256="1sfv98q0z3x5lzmvhbjh1k65flxhsjfx5nqhlhhihcs5rjx8pa3h"; depends=[]; };
   OCplus = derive2 { name="OCplus"; version="1.55.0"; sha256="0nn2adv9v0j0dhz93kd2d3bh1fx31vg3qk9sygrf1xbwqppmcyp9"; depends=[akima multtest]; };
   OGSA = derive2 { name="OGSA"; version="1.11.0"; sha256="063y4bzxiwjb0nvh3lkkgd39p59sy9drzcckpkxm5yxm3scrdy2f"; depends=[Biobase gplots limma]; };
   OLIN = derive2 { name="OLIN"; version="1.59.0"; sha256="0q0cr7yfprvzl01dgb4mwpbwnj1yfpn4myf8jksckiy0s2cwinra"; depends=[limma locfit marray]; };
   OLINgui = derive2 { name="OLINgui"; version="1.55.0"; sha256="1wjsb9h443d82x6vq70plhv7cgc3n7imvjlian1a0hd9dbcx9ss3"; depends=[marray OLIN tkWidgets widgetTools]; };
-  OPWeight = derive2 { name="OPWeight"; version="1.3.0"; sha256="1jjpz8inwfwpky316l61lka8g0dp69qr8kbgi6g54f0y0kjcq5fa"; depends=[MASS qvalue tibble]; };
-  ORFik = derive2 { name="ORFik"; version="1.1.0"; sha256="03fv9dr9jpzavrnbjd1pp6jlbi5i3sbg6zbi3p7z95rm8j1cds6x"; depends=[Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp Rsamtools rtracklayer S4Vectors]; };
+  OMICsPCA = derive2 { name="OMICsPCA"; version="0.99.17"; sha256="1na9swmy7z5xnbvp7h2x6s1jgdhifwdh36ad7g7jlhfc7v8a3kqh"; depends=[cluster clValid corrplot cowplot data_table factoextra FactoMineR fpc GenomeInfoDb ggplot2 HelloRanges IRanges kableExtra magick MASS MultiAssayExperiment NbClust OMICsPCAdata pdftools PerformanceAnalytics reshape2 rgl rmarkdown rtracklayer tidyr]; };
+  OPWeight = derive2 { name="OPWeight"; version="1.3.1"; sha256="17xrv1ad4wv20q4lwgxpr58sn73klx165h2pvjwly8v68hx1713s"; depends=[MASS qvalue tibble]; };
+  ORFik = derive2 { name="ORFik"; version="1.1.14"; sha256="1cq43ha9brllyn1p72978xcvb45iapkz2hsfh6anbh4xdhv9pbxg"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rcpp Rsamtools rtracklayer S4Vectors]; };
   OSAT = derive2 { name="OSAT"; version="1.29.0"; sha256="174jna1bl6vkbr3zypyfnhakfm7bm6llfcgghr4m9bvc8a6hxq6b"; depends=[]; };
   OTUbase = derive2 { name="OTUbase"; version="1.31.0"; sha256="0p86dn54pipqy3v74iwgvs2xqxypq6iq58y9m0pqbncryrszcs0p"; depends=[Biobase Biostrings IRanges S4Vectors ShortRead vegan]; };
-  OmaDB = derive2 { name="OmaDB"; version="1.1.1"; sha256="1y2xflz6cbdhxsyd0nx131amxmq4jjfcgma34vrl6jzl9y9l96ga"; depends=[ape Biostrings GenomicRanges httr IRanges plyr topGO]; };
+  OUTRIDER = derive2 { name="OUTRIDER"; version="0.99.31"; sha256="1wihfldpj8hq86z9ln5c06rr5kv8cjx5bmcqz5cx58vxg3sr86h4"; depends=[BBmisc Biobase BiocGenerics BiocParallel data_table DESeq2 GenomicFeatures GenomicRanges ggplot2 ggpubr gplots IRanges matrixStats pcaMethods plotly plyr PRROC RColorBrewer Rcpp RcppArmadillo reticulate S4Vectors scales SummarizedExperiment]; };
+  OmaDB = derive2 { name="OmaDB"; version="1.1.4"; sha256="192wpb9f7vwkrlq2y2r7kicppqc5c9hb7nk00im06588mdldbp4p"; depends=[ape Biostrings GenomicRanges httr IRanges jsonlite plyr topGO]; };
   OmicCircos = derive2 { name="OmicCircos"; version="1.19.0"; sha256="03laa1vjjxgrpcz2sxdq9dq0fa2s04jvf56q03h5gx8hkfn4rv7v"; depends=[GenomicRanges]; };
-  OmicsMarkeR = derive2 { name="OmicsMarkeR"; version="1.13.0"; sha256="1fqmyfpjmpx3ihbvf5w15v48w2zbkx8iyyajc9gpsb033abzl3fm"; depends=[assertive assertive_base caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; };
-  Onassis = derive2 { name="Onassis"; version="1.3.0"; sha256="1smj5ii8mblmkg1p8ssi5xq5aqa13nl7fc0nlpbflv3cpssimzjs"; depends=[AnnotationDbi data_table GEOmetadb OnassisJavaLibs RCurl rJava RSQLite]; };
-  OncoScore = derive2 { name="OncoScore"; version="1.9.0"; sha256="0ckcnhr5f6lcarg6zjyszmf5yl6gw1g09j6jnqq87pk9g7nsi3n6"; depends=[biomaRt]; };
-  OncoSimulR = derive2 { name="OncoSimulR"; version="2.11.0"; sha256="02kbkpjkpi3srxgz8jcyk1dhsc2q19ghbd3p160v2sf966g1286d"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph nem RColorBrewer Rcpp Rgraphviz smatr]; };
+  OmicsMarkeR = derive2 { name="OmicsMarkeR"; version="1.13.1"; sha256="0fx2jjyn196344indfpdiaf63abvxm1rw7ris378rzpl282kch2m"; depends=[assertive assertive_base caret caTools data_table DiscriMiner e1071 foreach gbm glmnet pamr permute plyr randomForest]; };
+  Onassis = derive2 { name="Onassis"; version="1.3.7"; sha256="11ifi7bsdy6yrgs54pglaqhgw86zndn98qhygzkw7sxgb8b7ly18"; depends=[AnnotationDbi data_table DT GEOmetadb knitr OnassisJavaLibs RCurl rJava RSQLite]; };
+  OncoScore = derive2 { name="OncoScore"; version="1.9.3"; sha256="07pvd6alsbvm4wjlz3m3dnl0hyzv33fvznzxhcsgh1sz2kv92aya"; depends=[biomaRt]; };
+  OncoSimulR = derive2 { name="OncoSimulR"; version="2.11.1"; sha256="1nkwfc2gcmfn8pnz6zk7bywr1n75jrrfyhmbj0mzzhp4cjxsrj8d"; depends=[car data_table dplyr ggplot2 ggrepel graph gtools igraph nem RColorBrewer Rcpp Rgraphviz smatr]; };
   OrderedList = derive2 { name="OrderedList"; version="1.53.0"; sha256="1pdv3pih594x3bkrzmm7ab418mxjsa17qbv0dpmw4w1yyvrlyz5m"; depends=[Biobase twilight]; };
-  Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.9.0"; sha256="196ispr6m2r1fc4l4jm985njh8xz7qxcsr8w0kvffv63zx0zy807"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges RSQLite S4Vectors]; };
-  OrganismDbi = derive2 { name="OrganismDbi"; version="1.23.0"; sha256="0mjav9c9w5mwmkdisci9c7i993xyvqbmsa8nw9kyhqirsxf0p7cc"; depends=[AnnotationDbi Biobase BiocGenerics BiocInstaller DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; };
+  Organism_dplyr = derive2 { name="Organism.dplyr"; version="1.9.2"; sha256="1n87ajas2wrrpkpmy0n9zim6f1by9vvqk9wh25kk4rxp3500d8gh"; depends=[AnnotationDbi AnnotationFilter BiocFileCache DBI dbplyr dplyr GenomeInfoDb GenomicFeatures GenomicRanges IRanges RSQLite S4Vectors]; };
+  OrganismDbi = derive2 { name="OrganismDbi"; version="1.23.2"; sha256="18l7ki8vaavzy0380gw1bhpjf5xs3naaq44xfam307pl5h7xr8c0"; depends=[AnnotationDbi Biobase BiocGenerics BiocManager DBI GenomicFeatures GenomicRanges graph IRanges RBGL S4Vectors]; };
   Oscope = derive2 { name="Oscope"; version="1.11.0"; sha256="1x8z5i3v42787iv9hddp65cggnlvr7xa9kippi0sn0wr7gd79zcw"; depends=[BiocParallel cluster EBSeq testthat]; };
   OutlierD = derive2 { name="OutlierD"; version="1.45.0"; sha256="085nk41icxzx8halczi4kjd262y8dfxq6lrhwiy8qjb216hbrln6"; depends=[Biobase quantreg]; };
-  PAA = derive2 { name="PAA"; version="1.15.0"; sha256="06slcqrpcvz713ga5vl2w0dyswqb78nnqvvf0dxi5cdw8g3h58gs"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; };
+  PAA = derive2 { name="PAA"; version="1.15.2"; sha256="16w6xc05gs9ynj01xkrk7gf0qvqknfpicayik5qlm7gmm1k43hm8"; depends=[e1071 gplots gtools limma MASS mRMRe randomForest Rcpp ROCR sva]; };
   PADOG = derive2 { name="PADOG"; version="1.23.0"; sha256="10libml1j14yy70s22yf8i4mh8awmnx5a94b3krmh6py2xlw41nj"; depends=[AnnotationDbi Biobase doRNG foreach GSA hgu133a_db hgu133plus2_db KEGG_db KEGGdzPathwaysGEO limma nlme]; };
   PANR = derive2 { name="PANR"; version="1.27.0"; sha256="0zr55whhmqyic41chlzxhrn081ray8gl90llb6rwigvmzhfjabyr"; depends=[igraph MASS pvclust RedeR]; };
   PAPi = derive2 { name="PAPi"; version="1.21.0"; sha256="1qnbqa72w1734j6rbdbays1f4ysl2b1r65p2hi580zwwi6isaa3i"; depends=[KEGGREST svDialogs]; };
   PCAN = derive2 { name="PCAN"; version="1.9.0"; sha256="14ph4mk4svinwpy0rw2b3n96dswahw6273lggw2blp9s24a56a1h"; depends=[BiocParallel]; };
   PCpheno = derive2 { name="PCpheno"; version="1.43.0"; sha256="004qx7rclh2q9bbrqf4d54jlzpha8vg0lbaf67gf42ivav0fl908"; depends=[annotate AnnotationDbi Biobase Category GO_db graph GSEABase KEGG_db ppiData ppiStats ScISI SLGI]; };
   PECA = derive2 { name="PECA"; version="1.17.0"; sha256="0p4vg0kcrypxm4g8al50rcvrk10lqs23mc00hrd1s8ydycvgd26a"; depends=[affy aroma_affymetrix aroma_core genefilter limma preprocessCore ROTS]; };
-  PGA = derive2 { name="PGA"; version="1.11.2"; sha256="08ksqsrpx8mj3mbdbvnbx9bnwxqskkyd340a13r76f5d1p44086m"; depends=[AnnotationDbi biomaRt Biostrings data_table GenomicFeatures GenomicRanges ggplot2 IRanges Nozzle_R1 pheatmap RCurl Rsamtools RSQLite rTANDEM rtracklayer S4Vectors stringr VariantAnnotation]; };
+  PGA = derive2 { name="PGA"; version="1.11.4"; sha256="1dcig05dglia3ixymm1s7hzxf5fa7p6bgcwlf66qdx72iagr9ivp"; depends=[AnnotationDbi biomaRt Biostrings customProDB data_table GenomicFeatures GenomicRanges ggplot2 IRanges Nozzle_R1 pheatmap RCurl Rsamtools RSQLite rTANDEM rtracklayer S4Vectors stringr VariantAnnotation]; };
   PGSEA = derive2 { name="PGSEA"; version="1.55.0"; sha256="07ynkcxppvm8s525y10ly6jcc0ga93a8sqihdxhs1yg092pcbx64"; depends=[annaffy AnnotationDbi Biobase GO_db KEGG_db]; };
   PICS = derive2 { name="PICS"; version="2.25.0"; sha256="1qfv4ddkym5s7171i0c4s5v3x8liaxngpv40y362cr895wa63mwm"; depends=[BiocGenerics GenomicAlignments GenomicRanges IRanges Rsamtools S4Vectors]; };
   PING = derive2 { name="PING"; version="2.25.0"; sha256="1lgvn09a1frb6cqrnrvmyzlwm7rgis61wd1gqv5y6pf0w6m6ya9k"; depends=[BiocGenerics BSgenome chipseq fda GenomicRanges Gviz IRanges PICS S4Vectors]; };
   PLPE = derive2 { name="PLPE"; version="1.41.0"; sha256="11a1wsgzssn5nqbmxxrfqk7js6h3y0zcxgfyqr5hvfz6licl2q3v"; depends=[Biobase LPE MASS]; };
   POST = derive2 { name="POST"; version="1.5.0"; sha256="099q5w5sgpamgncga096szl40i3lzjnphki2kfby0svkkvjiyrhl"; depends=[Biobase CompQuadForm GSEABase Matrix survival]; };
   PPInfer = derive2 { name="PPInfer"; version="1.7.0"; sha256="0pvhfc3qyxx6vxww6fx7jx8hb72sl4jna1c3bnyw6z7lvp7a8cxw"; depends=[biomaRt fgsea ggplot2 igraph kernlab STRINGdb yeastExpData]; };
-  PREDA = derive2 { name="PREDA"; version="1.27.0"; sha256="15ndnwf3f1cj2h0vrh71gs7xdvy97nncbxrlwk6yisvgndjbdmsb"; depends=[annotate Biobase lokern multtest]; };
+  PREDA = derive2 { name="PREDA"; version="1.27.1"; sha256="00wwfvcahrhyxylcg5wjsbv3aqsvw230lcggkk3jrwdyb5x902p2"; depends=[annotate Biobase lokern multtest]; };
   PROMISE = derive2 { name="PROMISE"; version="1.33.0"; sha256="1gkbpj9cd5fbrrp2zmffnckynbn81kqyg5wvy2g88spa1zxsx6vp"; depends=[Biobase GSEABase]; };
   PROPER = derive2 { name="PROPER"; version="1.13.0"; sha256="1w77rishajj0azrcf0cfsg9is98w1f1w3hfh72rgi7kc93d0k4v0"; depends=[edgeR]; };
   PROPS = derive2 { name="PROPS"; version="1.3.0"; sha256="15md6zvsa9ismdwbhlzwxkyj38n4bqv4kpbvxbzg7kb50hc109w6"; depends=[Biobase bnlearn reshape2 sva]; };
   PROcess = derive2 { name="PROcess"; version="1.57.0"; sha256="1sb25yfpvq4z6famifk951gwx75dd51srf1khm96psz9k0klxbqg"; depends=[Icens]; };
   PSEA = derive2 { name="PSEA"; version="1.15.0"; sha256="1rcz03n4asjajlncppvfhmlnar6f9qzb6m9bg99nmp0gdkjcwa2j"; depends=[Biobase MASS]; };
-  PSICQUIC = derive2 { name="PSICQUIC"; version="1.19.0"; sha256="06x6r2js8mxl10yrgmmvzb0na5ydya3ldzxaagh8z21smi154215"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; };
+  PSICQUIC = derive2 { name="PSICQUIC"; version="1.19.1"; sha256="0554irz5sxq3vglxq1jlr0fip3hfd41zw5wfd05gn5k0h8s3ff7j"; depends=[BiocGenerics biomaRt httr IRanges plyr RCurl]; };
   PWMEnrich = derive2 { name="PWMEnrich"; version="4.17.0"; sha256="1mknim17d0wl7vhn6cffjasisd9nmgs4b3fjz42yjj9y5xqjxwv9"; depends=[BiocGenerics Biostrings evd gdata seqLogo]; };
   PanVizGenerator = derive2 { name="PanVizGenerator"; version="1.9.0"; sha256="0x1rzblyy45xdr3hnjbacip7v1pbr54wfc2abldgij9mgc0hmhl9"; depends=[FindMyFriends igraph jsonlite pcaMethods shiny]; };
   Path2PPI = derive2 { name="Path2PPI"; version="1.11.0"; sha256="1f6qc6cvsrnhh26lkprjan9fxc1kw4hbb1wbr83rswg0lj8nyg6r"; depends=[igraph]; };
-  PathNet = derive2 { name="PathNet"; version="1.21.0"; sha256="1gnzghvj0gf4mcbh099v6c13gqjkalgb3g9fpn2i86fq8h61zplh"; depends=[]; };
-  PathoStat = derive2 { name="PathoStat"; version="1.7.2"; sha256="0j5by6yqgiyj17wn036dkb9q3d47ynb4m4w9zkf01d38lqzfp2hr"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; };
-  PathwaySplice = derive2 { name="PathwaySplice"; version="1.5.0"; sha256="15yc7d84cghmqai4m86bzi3cwidngmn6b680a1ngm6lmfj03bykj"; depends=[annotate AnnotationDbi AnnotationHub BiasedUrn Biobase BiocGenerics DOSE dplyr EnrichmentBrowser ensembldb gdata geneLenDataBase GO_db goseq gplots gridExtra htmlwidgets igraph JunctionSeq KEGGREST mgcv org_Hs_eg_db org_Mm_eg_db plotly RColorBrewer reshape2 S4Vectors tibble VennDiagram webshot]; };
-  PharmacoGx = derive2 { name="PharmacoGx"; version="1.11.0"; sha256="0s2gwvp9pdc1qf35apcgscz2xrx5sy1x9kcixy9wjwm4qnhr8cag"; depends=[Biobase caTools downloader lsa magicaxis piano RColorBrewer reshape2]; };
+  PathNet = derive2 { name="PathNet"; version="1.21.2"; sha256="1ihd81wwx0w1alzylc2wydg9kx9x3m2hw3zyp8qjhxxjf9pps507"; depends=[]; };
+  PathoStat = derive2 { name="PathoStat"; version="1.7.8"; sha256="1lnv8x2im6nw4kckv62cmxi06hjxw3ivj9jyzxi9wc0yylyrbp6j"; depends=[ape BiocStyle ComplexHeatmap corpcor DESeq2 devtools dplyr DT edgeR ggplot2 glmnet gmodels knitr limma matrixStats phyloseq plotly plyr RColorBrewer rentrez reshape2 ROCR scales shiny shinyjs tidyr vegan webshot XML]; };
+  PathwaySplice = derive2 { name="PathwaySplice"; version="1.5.2"; sha256="1dj56ssc31yxn3g29485phmjjd9a4nndx455yvvig8p74630149w"; depends=[annotate AnnotationDbi AnnotationHub BiasedUrn Biobase BiocGenerics DOSE dplyr EnrichmentBrowser ensembldb gdata geneLenDataBase GO_db goseq gplots gridExtra htmlwidgets igraph JunctionSeq KEGGREST mgcv org_Hs_eg_db org_Mm_eg_db plotly RColorBrewer reshape2 S4Vectors tibble VennDiagram webshot]; };
+  Pbase = derive2 { name="Pbase"; version="0.21.3"; sha256="0945vdb18879j269fd16rac4pmlnqbddp6nn1vkfyprfqv3aqdq8"; depends=[AnnotationFilter Biobase BiocGenerics BiocParallel biomaRt Biostrings cleaver ensembldb GenomicRanges Gviz IRanges MSnbase mzID mzR Pviz Rcpp rtracklayer S4Vectors]; };
+  PharmacoGx = derive2 { name="PharmacoGx"; version="1.11.3"; sha256="14dib394xhrdapli5lwrzvf4fmbbgpcrgnbrv80749y9ivmg2jb1"; depends=[Biobase caTools downloader lsa magicaxis piano RColorBrewer reshape2]; };
   PhenStat = derive2 { name="PhenStat"; version="2.17.0"; sha256="1fvkaqg1ignyknjgrnj359a5276rrscrkdk9029851rjpyzwypd5"; depends=[car corrplot ggplot2 graph knitr lme4 logistf MASS msgps nlme nortest pingr reshape SmoothWin]; };
-  Pi = derive2 { name="Pi"; version="1.9.0"; sha256="1bdr53dxz2sfmm7n4214m5mqp47l8ipsm562mhs1pybqfawfwfff"; depends=[caret dnet GenomeInfoDb GenomicRanges ggbio ggplot2 ggrepel glmnet Gviz igraph lattice MASS Matrix plot3D randomForest ROCR scales supraHex XGR]; };
-  Pigengene = derive2 { name="Pigengene"; version="1.7.4"; sha256="072bzpimq9135r4s7sfxgw8sb6h0fgygay9fvlbldfcql8amx7kp"; depends=[bnlearn C50 GO_db graph impute MASS matrixStats partykit pheatmap preprocessCore Rgraphviz WGCNA]; };
+  Pi = derive2 { name="Pi"; version="1.9.3"; sha256="0h3a40bhj2410w8ibfbfp2nl76c5anh62pva8phf6y2g4bxvhi9p"; depends=[caret dnet GenomeInfoDb GenomicRanges ggbio ggplot2 ggrepel glmnet Gviz igraph lattice MASS Matrix plot3D randomForest ROCR scales supraHex XGR]; };
+  Pigengene = derive2 { name="Pigengene"; version="1.7.8"; sha256="0spdvc7wl8y7nsvyfrzni666wpbi8021ff2nlc4f6chhx6zqvg2i"; depends=[bnlearn C50 GO_db graph impute MASS matrixStats partykit pheatmap preprocessCore Rgraphviz WGCNA]; };
   Polyfit = derive2 { name="Polyfit"; version="1.15.0"; sha256="0k3apzd7szmglba2s51grmp4lbvv2wmv6kvv43mvbvrvc59cyxq5"; depends=[DESeq]; };
   PowerExplorer = derive2 { name="PowerExplorer"; version="1.1.1"; sha256="06igcls1khn3dvajp7289v4ax6yr5cgg0da0d81dkr38cb6lwnpx"; depends=[Biobase BiocParallel data_table DESeq2 ggplot2 gridExtra MASS ROTS S4Vectors SummarizedExperiment vsn]; };
   Prize = derive2 { name="Prize"; version="1.11.0"; sha256="0fk26mk97l3jdj9n20ha7m8gcfxc20w4c9c5xshnphfij56brrr5"; depends=[diagram ggplot2 gplots matrixcalc reshape2 stringr]; };
   ProCoNA = derive2 { name="ProCoNA"; version="1.19.0"; sha256="1648ly7mpqfhj1phnvwrkzsj31wdk5ddg7cc073kbwwgmz859r0d"; depends=[BiocGenerics flashClust GOstats MSnbase WGCNA]; };
-  Prostar = derive2 { name="Prostar"; version="1.13.0"; sha256="01k76vh9z15ya8cjymwmpcl0z79q3fqpz2m5yvvsy21ijw2vd004"; depends=[DAPAR DAPARdata data_table DT highcharter htmlwidgets R_utils rhandsontable shiny shinyAce shinyBS shinyjs webshot]; };
+  Prostar = derive2 { name="Prostar"; version="1.13.16"; sha256="0kfqzibwkwbggjs5isgf9s1nk3zssahcicf9vpr3s2rkkmn18y8j"; depends=[BiocManager colourpicker DAPAR DAPARdata data_table DT future highcharter htmlwidgets later promises R_utils rclipboard rhandsontable shiny shinyAce shinyBS shinycssloaders shinyjqui shinyjs shinythemes shinyTree shinyWidgets webshot XML]; };
   ProtGenerics = derive2 { name="ProtGenerics"; version="1.13.0"; sha256="0mcdiy93c01ki2zfv90a5q00hss8i4mds4gw6n6gp32f40ap7h2j"; depends=[]; };
-  ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.11.0"; sha256="01279ybid6k8l8w564rpx7jd1487dafxkmgfzvg0964z930i7qsm"; depends=[AnnotationHub AnnotationHubData Biobase BiocInstaller Biostrings GenomeInfoDb MSnbase mzR RCurl]; };
-  PureCN = derive2 { name="PureCN"; version="1.11.11"; sha256="1n2ikzcyxw8rfbid2bgg6fnn3nlfwgmjw73f9y06hyci0m2qpc8n"; depends=[BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; };
+  ProteoMM = derive2 { name="ProteoMM"; version="0.99.8"; sha256="0j9sjj7r6jbgwv2vfsgd61xk5sd6rlw6ns5j0qvpcry6a5a26z3s"; depends=[biomaRt gdata ggplot2 ggrepel gtools matrixStats]; };
+  ProteomicsAnnotationHubData = derive2 { name="ProteomicsAnnotationHubData"; version="1.11.1"; sha256="1zlwsfk1f0pc6diqmd5r6cfxz48zz1m1hxagly7rw3v52qmjqynh"; depends=[AnnotationHub AnnotationHubData Biobase BiocManager Biostrings GenomeInfoDb MSnbase mzR RCurl]; };
+  PureCN = derive2 { name="PureCN"; version="1.11.20"; sha256="0nznlpqpj1lrxn0lymq5xksn8zs6hda4jmq57mks9nj8ilq1sw0r"; depends=[BiocGenerics Biostrings data_table DNAcopy futile_logger GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 gridExtra IRanges Matrix RColorBrewer rhdf5 Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation VGAM]; };
   Pviz = derive2 { name="Pviz"; version="1.15.0"; sha256="08kkrhxmy60lkvmjwpkv3nv7w8mybv5465923a9hghzs291qjvn4"; depends=[Biostrings biovizBase data_table GenomicRanges Gviz IRanges]; };
   QDNAseq = derive2 { name="QDNAseq"; version="1.17.0"; sha256="113s3ir4dxhxxpfy700hp2lgvx6qgzy1nbqin0g3fz7z0y50m2ns"; depends=[Biobase BiocParallel CGHbase CGHcall DNAcopy GenomicRanges IRanges matrixStats R_utils Rsamtools]; };
+  QSutils = derive2 { name="QSutils"; version="0.99.8"; sha256="03840r3xw83gd1k56p66qang26g26gilrddfdnjjilpkcshmbksd"; depends=[ape BiocGenerics Biostrings psych]; };
   QUALIFIER = derive2 { name="QUALIFIER"; version="1.25.1"; sha256="1acaga0zc3vnjmr15xmyd05xp2cdwh96armg47qbpb4kygfh433g"; depends=[Biobase data_table flowCore flowViz flowWorkspace hwriter lattice latticeExtra MASS ncdfFlow reshape XML]; };
-  QUBIC = derive2 { name="QUBIC"; version="1.9.0"; sha256="1kayxj3msc171x6glgvqpqygrigf8x0knknk7ci7fmbg6haf44jf"; depends=[biclust Matrix Rcpp RcppArmadillo]; };
-  QuartPAC = derive2 { name="QuartPAC"; version="1.13.0"; sha256="0mxq3nn5lqfqk8lpg1pys724pvviqz1fkhbnp5zlszvyhikmic9q"; depends=[data_table GraphPAC iPAC SpacePAC]; };
-  QuasR = derive2 { name="QuasR"; version="1.21.0"; sha256="1q3h4dg95wqmfkbrp5rvyp7qazafcgwc4chhw7rlwdbvic080g63"; depends=[Biobase BiocGenerics BiocInstaller BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rsamtools rtracklayer S4Vectors ShortRead zlibbioc]; };
-  QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.15.0"; sha256="0b0qxsqf3g42k68d22w22n8y5yjvhx4jfkwpaxg38z5i8404n03k"; depends=[dplyr Rcpp yaml]; };
-  R3CPET = derive2 { name="R3CPET"; version="1.13.0"; sha256="0viqypiwmrhi08islj8lg2byhvhfblwjj340ms2a7wf8zbyl439l"; depends=[BiocGenerics clues clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; };
+  QUBIC = derive2 { name="QUBIC"; version="1.9.1"; sha256="0akvph9v1rqiq5a4ygi3wcpi82n4py59fdwvzbphnkd1wpva61wn"; depends=[biclust Matrix Rcpp RcppArmadillo]; };
+  QuartPAC = derive2 { name="QuartPAC"; version="1.13.1"; sha256="105jl05hai0jiy240618zbb861d7ya0x51hds6h9af189jgc98jz"; depends=[data_table GraphPAC iPAC SpacePAC]; };
+  QuasR = derive2 { name="QuasR"; version="1.21.2"; sha256="1wz8mq86ffws24akwf0idvq3s2ys8dgwcm47ajv59589x75a9qwv"; depends=[Biobase BiocGenerics BiocManager BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges IRanges Rbowtie Rsamtools rtracklayer S4Vectors ShortRead zlibbioc]; };
+  QuaternaryProd = derive2 { name="QuaternaryProd"; version="1.15.3"; sha256="0k3a64j3zkvqqg04hlx94iiw5g2hndnl99m2bbn6asjx3vyjj237"; depends=[dplyr Rcpp yaml]; };
+  R3CPET = derive2 { name="R3CPET"; version="1.13.1"; sha256="182h5zgq496lg284ncjk5qrqfnzab2cs8lkjrrxf4yzvf8h38bgl"; depends=[BiocGenerics clues clValid data_table GenomeInfoDb GenomicRanges ggbio ggplot2 Hmisc igraph IRanges pheatmap Rcpp RCurl reshape2 S4Vectors]; };
   R453Plus1Toolbox = derive2 { name="R453Plus1Toolbox"; version="1.31.0"; sha256="16cri94hg585804xaq5gfbs9nn62nhmcayapvwpb2y7vs855g4qx"; depends=[Biobase BiocGenerics biomaRt Biostrings BSgenome GenomicRanges IRanges R2HTML Rsamtools S4Vectors ShortRead SummarizedExperiment TeachingDemos VariantAnnotation xtable XVector]; };
   R4RNA = derive2 { name="R4RNA"; version="1.9.0"; sha256="08jrmdcdwk9dzk38sjc6rxn4nf3s5lg6x9w540drhiynd3jw9nxw"; depends=[Biostrings]; };
   RBGL = derive2 { name="RBGL"; version="1.57.0"; sha256="0bm2wfsi3himissj2x1v16rgrz3j2wz9s1kisaxxpgv27a4bvp0i"; depends=[graph]; };
-  RBM = derive2 { name="RBM"; version="1.13.0"; sha256="0ssl53wbzakkggx2jlzy378jnw13w116dxs3wnzmdaywa5nqbamr"; depends=[limma marray]; };
+  RBM = derive2 { name="RBM"; version="1.13.1"; sha256="1yc0cqw84b5bzwnp85x50q3ibq7zr3awnc0ndrf05q38jbqrgskc"; depends=[limma marray]; };
   RBioinf = derive2 { name="RBioinf"; version="1.41.0"; sha256="1bi7dx51nhq7y2s0395hncbfbwfhdixwwn5n238f6fq6sxg95v1h"; depends=[graph]; };
-  RCAS = derive2 { name="RCAS"; version="1.7.0"; sha256="14s4f6lfy31vv791h8yasc4b3883r0ksjab9wrsw8w8381ac2323"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DBI DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo knitr motifRG org_Hs_eg_db pbapply pheatmap plotly plotrix proxy rmarkdown RSQLite rtracklayer S4Vectors topGO]; };
+  RCAS = derive2 { name="RCAS"; version="1.7.3"; sha256="1k8frzidrg88j0mzbhn4njm2jfgxi5lv91yszarl43fhl19zrdl2"; depends=[AnnotationDbi BiocGenerics biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg19 cowplot data_table DBI DT genomation GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggseqlogo knitr motifRG org_Hs_eg_db pbapply pheatmap plotly plotrix proxy rmarkdown RSQLite rtracklayer S4Vectors topGO]; };
   RCASPAR = derive2 { name="RCASPAR"; version="1.27.0"; sha256="00r0p6hzzjsgpwc0ja6ws2sn7fp5qzlcajvwq3l5zd99zcn3lds8"; depends=[]; };
-  RCy3 = derive2 { name="RCy3"; version="2.1.13"; sha256="1kp2hgh2kid9xy8w97wkwc3759sxz7lp6inamsflff5a12ffd41c"; depends=[BiocGenerics graph httr igraph RJSONIO XML]; };
-  RCyjs = derive2 { name="RCyjs"; version="2.3.6"; sha256="1gbqpf9ljvlhl8zmd39d7fifn67sv6gmfvryfk9yf0y53x9l95sc"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; };
+  RCy3 = derive2 { name="RCy3"; version="2.1.26"; sha256="0j8ynimcgr0jbnlfib17vr4zjf3k5j5159aq1v8y3dxcx21hqh0d"; depends=[BiocGenerics graph httr igraph RJSONIO XML]; };
+  RCyjs = derive2 { name="RCyjs"; version="2.3.11"; sha256="1q74r04h169mix224jcahh8mir17dc1ifasfcgjir9szw3gh97lv"; depends=[base64enc BiocGenerics BrowserViz graph httpuv]; };
   RDAVIDWebService = derive2 { name="RDAVIDWebService"; version="1.19.0"; sha256="0in7bnx1v9z9z55b88hmix8fgrjysbzjxp0c53psq3k7fm46yxg7"; depends=[Category ggplot2 GO_db GOstats graph RBGL rJava]; };
   RDRToolbox = derive2 { name="RDRToolbox"; version="1.31.0"; sha256="0zm1319g4b0jfqi7ix7insqadilccmlcc1bnwf4hwgw1d2bsby1p"; depends=[MASS rgl]; };
+  REBET = derive2 { name="REBET"; version="0.99.6"; sha256="1q8ksqv13rnk2rv0xs1cfkskp8j701pi231b5m14s41gxq85f689"; depends=[ASSET]; };
   REDseq = derive2 { name="REDseq"; version="1.27.0"; sha256="0s1v5qlbzz54pck44vy0bzhkm0ga7wa01nrr4x1fbswxbkz80djy"; depends=[AnnotationDbi BiocGenerics Biostrings BSgenome BSgenome_Celegans_UCSC_ce2 ChIPpeakAnno IRanges multtest]; };
-  REMP = derive2 { name="REMP"; version="1.5.0"; sha256="0gr7x6l9z871p41w32q8dqz2jaglvz51d7zrrwxy55iidbnqw5jv"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 caret doParallel foreach GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b2_hg19 impute IRanges iterators kernlab minfi org_Hs_eg_db ranger S4Vectors settings SummarizedExperiment]; };
+  REMP = derive2 { name="REMP"; version="1.5.2"; sha256="04jg8c2x1k3wbf1gr8ncdgy4z09r2zk1fhbxpgz8cv2hngdpwhfi"; depends=[AnnotationHub BiocGenerics BiocParallel Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 caret doParallel foreach GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b2_hg19 impute IRanges iterators kernlab minfi org_Hs_eg_db ranger S4Vectors settings SummarizedExperiment]; };
   RGMQL = derive2 { name="RGMQL"; version="1.1.0"; sha256="1z7dj3lmw40b08x33bl9fb4asr22syn0cinl12ya60nawh5rlxsi"; depends=[BiocGenerics data_table dplyr GenomicRanges glue httr plyr RGMQLlib rJava rtracklayer S4Vectors xml2]; };
   RGSEA = derive2 { name="RGSEA"; version="1.15.0"; sha256="1c0i33lz0cl983dk520g2caf0844jknd39h71fy6kynknqxmnqqs"; depends=[BiocGenerics]; };
   RGalaxy = derive2 { name="RGalaxy"; version="1.25.0"; sha256="04xs1w3yndlrdbac2ybzhdk8fdbg95a3qmjjqyykhfl5mck97d97"; depends=[Biobase BiocGenerics optparse roxygen2 XML]; };
   RGraph2js = derive2 { name="RGraph2js"; version="1.9.0"; sha256="0y7fnysz9rljyrk4gs1r29zgxzzcpwk3jayv6km20l6abxzbfccr"; depends=[digest graph rjson whisker]; };
-  RIPSeeker = derive2 { name="RIPSeeker"; version="1.21.0"; sha256="02m401h56lb88qcfbidfxvh5nxls465y68jgjcfv7sd4x83ykd7z"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
-  RITAN = derive2 { name="RITAN"; version="1.5.2"; sha256="0nfnrh4w3y33rygdl07ydvxzl05nnysl3zlsg9nf459w98y4s7xg"; depends=[BgeeDB dynamicTreeCut ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png ProNet RColorBrewer reshape2 RITANdata sqldf STRINGdb]; };
-  RIVER = derive2 { name="RIVER"; version="1.5.0"; sha256="1fdav14pba08a1hyqh82yad1ynvbzbc9i5gn5gxiypa833s5v31h"; depends=[Biobase ggplot2 glmnet pROC]; };
+  RIPSeeker = derive2 { name="RIPSeeker"; version="1.21.1"; sha256="0vxllhd0pyq1a3z0gqpiv5llyb18qi8ph6h8jmqbjsknba243j30"; depends=[GenomicAlignments GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
+  RITAN = derive2 { name="RITAN"; version="1.5.5"; sha256="0p2dpn6zas3wndzr9dbs1l97s5w7qzj0y7db7796jysd3mlzlvz1"; depends=[BgeeDB dynamicTreeCut ggplot2 gplots gridExtra gsubfn hash igraph knitr linkcomm MCL plotrix png RColorBrewer reshape2 RITANdata sqldf STRINGdb]; };
+  RIVER = derive2 { name="RIVER"; version="1.5.1"; sha256="1c7li0kihq3rxqv7ykz12accyqpiwwvjdlma137mfh5dhpjlx5cr"; depends=[Biobase ggplot2 glmnet pROC]; };
   RImmPort = derive2 { name="RImmPort"; version="1.9.0"; sha256="0amhihh6g8j817xr05bqcp9sx564gp0jlg34iinmjqzizksflv1g"; depends=[data_table DBI dplyr plyr reshape2 RSQLite sqldf]; };
   RJMCMCNucleosomes = derive2 { name="RJMCMCNucleosomes"; version="1.5.0"; sha256="008nmql2f1qw246bj50w38kabcfw2bvgqb086ch9h9cv4b976dwi"; depends=[BiocGenerics BiocParallel consensusSeekeR GenomeInfoDb GenomicRanges IRanges Rcpp S4Vectors]; };
   RLMM = derive2 { name="RLMM"; version="1.43.0"; sha256="1hfr0w56jai1v3x0b6w4z5y00yf8j2aa2yhcd994lj48klwgjacp"; depends=[MASS]; };
+  RMassBank = derive2 { name="RMassBank"; version="2.9.2"; sha256="0yvbd1425ygp3xmn1danhbx5865cyl2h340yscs4r6g9whciw1vn"; depends=[Biobase digest httr MSnbase mzR rcdk Rcpp RCurl rjson S4Vectors XML yaml]; };
   RNASeqPower = derive2 { name="RNASeqPower"; version="1.21.0"; sha256="0gd3mbish7k4zwfv4kadcnifwm485p7zizvdj8pk1ns1fl5cwpbz"; depends=[]; };
-  RNAdecay = derive2 { name="RNAdecay"; version="1.1.1"; sha256="1xnj3q52biy8rzpyvd7b77sszsvs01sxkkkkkz0waqi61q58rhvv"; depends=[ggplot2 gplots nloptr TMB]; };
-  RNAinteract = derive2 { name="RNAinteract"; version="1.29.0"; sha256="03xizq9h93ii1jwjbk6kcmh71fc882qk9fnv3hbl15a9d8yvzpnv"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; };
+  RNASeqR = derive2 { name="RNASeqR"; version="0.99.25"; sha256="03mka6s8s064agyrvl3xzdds1dr03jimgcqgnisr61ypdy9lyih0"; depends=[ballgown Biostrings clusterProfiler corrplot DESeq2 DOSE edgeR factoextra FactoMineR ggplot2 gridExtra org_Hs_eg_db org_Sc_sgd_db pathview PerformanceAnalytics pheatmap rafalib reshape2 reticulate Rsamtools stringr systemPipeR systemPipeRdata]; };
+  RNAdecay = derive2 { name="RNAdecay"; version="1.1.2"; sha256="09z07f5x0h19dbk47lwmp9h9ijvmdznr8hxxyihazqvr66qb5ghn"; depends=[ggplot2 gplots nloptr TMB]; };
+  RNAinteract = derive2 { name="RNAinteract"; version="1.29.1"; sha256="1wq1b3z8yqslw4l4103x28lv063m5f1wi1dr43q9h345gcb4kyvs"; depends=[abind Biobase cellHTS2 geneplotter gplots hwriter ICS ICSNP lattice latticeExtra limma locfit RColorBrewer splots]; };
   RNAither = derive2 { name="RNAither"; version="2.29.0"; sha256="0w90awkmdi2h6q2hpvl6i5qbkdggbpvac1cbxx2995hmx8lc6pwa"; depends=[biomaRt car geneplotter limma prada RankProd splots topGO]; };
   RNAprobR = derive2 { name="RNAprobR"; version="1.13.0"; sha256="0hjhk0ap6n17ccjkjfxq8c8cfg166gcwbapmwixac4dqwqg5k997"; depends=[BiocGenerics Biostrings GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr Rsamtools rtracklayer S4Vectors]; };
   ROC = derive2 { name="ROC"; version="1.57.0"; sha256="1glip25d37gz13b2c4zpk1vm34kvfxvgbsz302ww0g8wqq3cc0i5"; depends=[]; };
   ROTS = derive2 { name="ROTS"; version="1.9.1"; sha256="061z3cnwaz5fgbpikg6vqazp1bqsxp7ln8krn3i1fz20k4ny800z"; depends=[Biobase Rcpp]; };
   ROntoTools = derive2 { name="ROntoTools"; version="2.9.0"; sha256="1ivsr52qf9sz08zpp1vbvwyqpsfd55m4jj8g62mb5khkmrf8mnwl"; depends=[boot graph KEGGgraph KEGGREST Rgraphviz]; };
-  RPA = derive2 { name="RPA"; version="1.37.0"; sha256="0cm2sfv6pkrxjq8xnby2hsnda687bdlc63b3i96fmhzjldfwnixf"; depends=[affy BiocGenerics phyloseq]; };
-  RProtoBufLib = derive2 { name="RProtoBufLib"; version="1.3.0"; sha256="1ji9m1x9l84iwdw1bd2bhbvdfwn3jnw80inc6xnc6vp4k64zll4m"; depends=[]; };
+  RPA = derive2 { name="RPA"; version="1.37.2"; sha256="16yr6qp6wcdrb4zpyrs30zv0q4zb74s04fzpddk6c7v1phmakk0a"; depends=[affy BiocGenerics phyloseq]; };
+  RProtoBufLib = derive2 { name="RProtoBufLib"; version="1.3.7"; sha256="0f68ziylg1pp3wakxr08i6hlhf3grnvfmsr7fc1v1phsz8amg676"; depends=[]; };
   RRHO = derive2 { name="RRHO"; version="1.21.0"; sha256="00wy53vmfdzfv56ib277cl7rnv2l6klyixyjq93whmzr39d8mbwi"; depends=[VennDiagram]; };
   RSVSim = derive2 { name="RSVSim"; version="1.21.0"; sha256="0l7wq0cvws0n78xp14rwagrjhm3pxzf2jg3k1w5pv6w778mhm9dw"; depends=[Biostrings GenomicRanges IRanges ShortRead]; };
   RSeqAn = derive2 { name="RSeqAn"; version="1.1.0"; sha256="186qcffr5f1g5x5didd8gkhfdl9wxdivqjwxbcn001i3k71h11mm"; depends=[]; };
   RTCA = derive2 { name="RTCA"; version="1.33.0"; sha256="0wyvn004xjxgr80ar5a0bcc6jpz9ksi03is8yc8ijsdlssk9cs71"; depends=[Biobase gtools RColorBrewer]; };
-  RTCGA = derive2 { name="RTCGA"; version="1.11.0"; sha256="1r5qxbbw420cq2a648ispxwlswv5xpi9r4r89r7d7cgaw1k1n0h5"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; };
-  RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.11.1"; sha256="0ajrz01aqqs30m5dq6x0l2gn49vhbi4k9ppyzgdy0ljpvx95c8hb"; depends=[Biobase BiocGenerics data_table GenomeInfoDb GenomicRanges httr IRanges limma plyr RaggedExperiment RCircos RCurl RJSONIO S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; };
-  RTN = derive2 { name="RTN"; version="2.5.1"; sha256="1gwvqqjky6cgq4sdj8myjqrywdx7a44wnvb20l47qlqamlr41905"; depends=[car data_table igraph IRanges limma minet RedeR S4Vectors snow]; };
-  RTNduals = derive2 { name="RTNduals"; version="1.5.1"; sha256="17vp27lxjh3v0y2s1d96xk2y3wxwj2lh40c5z7lqh6qx89lyhirz"; depends=[RTN]; };
-  RTNsurvival = derive2 { name="RTNsurvival"; version="1.5.0"; sha256="0fyks8lvxqdli3wm0z0py6vn5y3mfpvi95mqb7hycafc2812am68"; depends=[png RColorBrewer RTN RTNduals survival]; };
+  RTCGA = derive2 { name="RTCGA"; version="1.11.3"; sha256="1r0c2lj73brq174lfnxlwvjz34wckf2kd5hkzmymwv6vgy83j98q"; depends=[assertthat data_table dplyr ggplot2 ggthemes knitr purrr rvest scales stringi survival survminer viridis XML xml2]; };
+  RTCGAToolbox = derive2 { name="RTCGAToolbox"; version="2.11.8"; sha256="0sb5n88vbx24dfn66i4xd71c8kswsgwd14zky172lrjhplb1lkwm"; depends=[BiocGenerics data_table DelayedArray GenomeInfoDb GenomicRanges IRanges limma RaggedExperiment RCircos RCurl RJSONIO S4Vectors stringr SummarizedExperiment survival TCGAutils XML]; };
+  RTN = derive2 { name="RTN"; version="2.5.6"; sha256="01r5hv1xc3znllqknc06x8zs9nxs2d9y2fxi8mv8ggxplaw05mwz"; depends=[data_table igraph IRanges limma minet mixtools RedeR S4Vectors snow viper]; };
+  RTNduals = derive2 { name="RTNduals"; version="1.5.4"; sha256="1kjx590l4q2g9khph4xfkj2nqnq9aycyy16havv2ll4i48k4j4i7"; depends=[RTN]; };
+  RTNsurvival = derive2 { name="RTNsurvival"; version="1.5.4"; sha256="0gn6s0lpxag113v1smh20k1w0yyhpr2wp4i0hvihxlqascmrp73j"; depends=[RColorBrewer RTN RTNduals scales survival viper]; };
   RTopper = derive2 { name="RTopper"; version="1.27.0"; sha256="1d2bnvjlwgrahxjd1x6gzdhz70wyd990iq9204kc072qyi40l2yz"; depends=[Biobase limma multtest]; };
-  RUVSeq = derive2 { name="RUVSeq"; version="1.15.0"; sha256="1dnjshlpalfnrgk9dmig5k1bnshpk4ifp3bvh1cp1z55yihmw111"; depends=[Biobase EDASeq edgeR MASS]; };
+  RUVSeq = derive2 { name="RUVSeq"; version="1.15.1"; sha256="0j60afjrnbi8x00nw5y0l8m2j7i4n1aq31k8swxinsniawhidbvn"; depends=[Biobase EDASeq edgeR MASS]; };
   RUVcorr = derive2 { name="RUVcorr"; version="1.13.0"; sha256="0cfq69vvajn2s8gyrr4g9vzf8l8wp7p6hg6jlfffv2kfn3yhd05g"; depends=[BiocParallel bladderbatch corrplot gridExtra lattice MASS psych reshape2 snowfall]; };
   RUVnormalize = derive2 { name="RUVnormalize"; version="1.15.0"; sha256="02v5kj8hbzgcckqq671zypfkf460j3rxiqxh4w5izp9bxqdv9g3g"; depends=[Biobase RUVnormalizeData]; };
-  RVS = derive2 { name="RVS"; version="1.3.0"; sha256="0y98yaj5lvlc4104nqjhk7g00f1zqaqsig3mdf7hvwqhlwdsyh0l"; depends=[gRain kinship2 snpStats]; };
-  RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.5.2"; sha256="157sfaz4s6wpvccn4s7w0j0iv69zqzf8vxpamp4kdzdhg9ky7byw"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors SummarizedExperiment]; };
-  RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.1.0"; sha256="1kzxl773z4619lvznxv67yb7k2lfjn3bfgfssgql0adrjfm8qi1a"; depends=[dnet igraph Matrix]; };
+  RVS = derive2 { name="RVS"; version="1.3.1"; sha256="02y68m30aqmcyf1bv0aicrijdx87gzaa9a5f2dlfjfd6jgk2ijn9"; depends=[gRain kinship2 snpStats]; };
+  RaggedExperiment = derive2 { name="RaggedExperiment"; version="1.5.7"; sha256="1wvczzqhsgdj0f6a2v7ls4c51vm9wik10wnlkxsw06h3xz6c3xmf"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment]; };
+  RandomWalkRestartMH = derive2 { name="RandomWalkRestartMH"; version="1.1.1"; sha256="0p9qvbsmxvca615h6pk51n8dm21265bmciix3ddnhljq1c6lgc7x"; depends=[dnet igraph Matrix]; };
   RankProd = derive2 { name="RankProd"; version="3.7.0"; sha256="1zqawks6i567dk4ylnyh0jddnp62nqygshv4ihy39xhjab4j04wx"; depends=[gmp Rmpfr]; };
   RareVariantVis = derive2 { name="RareVariantVis"; version="2.9.0"; sha256="1466zh50n0f1apkbd38lp84r8byras0pna5bm49bc7i7s9agkp14"; depends=[BiocGenerics BSgenome BSgenome_Hsapiens_UCSC_hg19 GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores googleVis gtools IRanges phastCons100way_UCSC_hg19 S4Vectors SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation]; };
   Rariant = derive2 { name="Rariant"; version="1.17.0"; sha256="0nm0k2d1bhqsk9gir38gd0py6xn5wk0b985kpix8ghi64mypmqmr"; depends=[BiocGenerics dplyr exomeCopy GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges reshape2 Rsamtools S4Vectors shiny SomaticSignatures VariantAnnotation VGAM]; };
   RbcBook1 = derive2 { name="RbcBook1"; version="1.49.0"; sha256="1ar8jl97fillw0g7kf09mxkr9215dw3jmw2b6qaq9pch7qg8qnr7"; depends=[Biobase graph rpart]; };
-  Rbowtie = derive2 { name="Rbowtie"; version="1.21.0"; sha256="05ql92h3s7ppsf5fdrsqbhsn9snwhf168yr78n7qhafw9p6ry77j"; depends=[]; };
-  Rbowtie2 = derive2 { name="Rbowtie2"; version="1.3.0"; sha256="02cf3hn9nb10583fwxqzb8iygsm5xzmxhk4y0iadyvxi6nsz6lbk"; depends=[]; };
+  Rbowtie = derive2 { name="Rbowtie"; version="1.21.2"; sha256="1l5mllfa4kfdrf65xmssd3wpfvqnl9p0lajg2fz1hl98xwm7yl31"; depends=[]; };
+  Rbowtie2 = derive2 { name="Rbowtie2"; version="1.3.1"; sha256="1ss2i77lq3fazv6ipv543cfizchp9gh566d7xbjkggh1a0vcm1db"; depends=[]; };
   Rcade = derive2 { name="Rcade"; version="1.23.0"; sha256="0d6cyn6b06g0qkps2d7b65p7pa7bz6iv71lv4hbzmdc581azg4fq"; depends=[baySeq GenomeInfoDb GenomicAlignments GenomicRanges IRanges plotrix rgl Rsamtools S4Vectors]; };
   Rchemcpp = derive2 { name="Rchemcpp"; version="2.19.0"; sha256="17kz0ld7hnrvdv69hz3kj3mhv2f4qms9i65lrwam63g0aydfzyrx"; depends=[ChemmineR Rcpp]; };
   RchyOptimyx = derive2 { name="RchyOptimyx"; version="2.21.0"; sha256="0fzmw1kxnaqmk5h61r2dkwq0xp8ir7gg7kq2wkhyvpd68hr3ir3d"; depends=[flowType graph Rgraphviz sfsmisc]; };
-  RcisTarget = derive2 { name="RcisTarget"; version="1.1.2"; sha256="1a909bnc96bhn1jd8yk1d68f9x49lbd6wgbmwqxq1k1iqh8qj2hs"; depends=[AUCell BiocGenerics data_table feather GSEABase R_utils SummarizedExperiment]; };
-  Rcpi = derive2 { name="Rcpi"; version="1.17.0"; sha256="0a6cs6bvnzx9cp5y4m3h9in0bhq78iy50p48p59k6qqzkvldgcqy"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; };
+  RcisTarget = derive2 { name="RcisTarget"; version="1.1.3"; sha256="09zkvl5hwcds9w5n5h51zgpilmygljmar3fqd5wihr8dd6bj1qnk"; depends=[AUCell BiocGenerics data_table feather GSEABase R_utils SummarizedExperiment]; };
+  Rcpi = derive2 { name="Rcpi"; version="1.17.2"; sha256="1d77jnlw2jsg8f2ij7ax8ngwb99bngiq0vvdpx2q5nmhkzn9w5vq"; depends=[Biostrings ChemmineR doParallel fmcsR foreach GOSemSim rcdk RCurl rjson]; };
   Rdisop = derive2 { name="Rdisop"; version="1.41.0"; sha256="038bgrf5bcdwy8bji5wprq55ypajwp68lqv1i24bk6hikfm2g7p9"; depends=[Rcpp RcppClassic]; };
   ReQON = derive2 { name="ReQON"; version="1.27.0"; sha256="1dvsnbsl5ljwfirn61rbcxvrdy74qv96xbs4d8x1wmkfs2bsm2gy"; depends=[rJava Rsamtools seqbias]; };
-  ReactomePA = derive2 { name="ReactomePA"; version="1.25.0"; sha256="0hrprjkzg6mdsyqyxgzpscfvgm0335j2avv96a9n70w7rj1zx3ym"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite igraph reactome_db]; };
-  ReadqPCR = derive2 { name="ReadqPCR"; version="1.27.0"; sha256="0qbfx6kj6bk60wilbnp49inairhhsi1638i5hhfd1w8365mmzalq"; depends=[affy Biobase]; };
+  ReactomePA = derive2 { name="ReactomePA"; version="1.25.1"; sha256="1kqhm5n1g8r1rci0n1135pcka2x0p8h565m609bfljiqnmgaza9v"; depends=[AnnotationDbi DOSE enrichplot ggplot2 ggraph graphite igraph reactome_db]; };
+  ReadqPCR = derive2 { name="ReadqPCR"; version="1.27.2"; sha256="1mbaqp0xj0ncdja7rgb84j54bv1vricsabnfj6d8v55yrp1jp7p6"; depends=[Biobase]; };
   RedeR = derive2 { name="RedeR"; version="1.29.0"; sha256="00j3yr07qg363ghbgv76ydyar0jp48zdfw5pdpxnv13mzm48wa4r"; depends=[igraph]; };
   RefNet = derive2 { name="RefNet"; version="1.17.0"; sha256="0lcbg131gxkvsvmbwj4gpqdpfqjik91jmyd2g745yb7rayly252g"; depends=[AnnotationHub BiocGenerics IRanges PSICQUIC RCurl shiny]; };
   RefPlus = derive2 { name="RefPlus"; version="1.51.0"; sha256="0wq0l2883ns2sl8ia5qdx6wn9227lxaz7m0g3lqmr36xkflc1ka1"; depends=[affy affyPLM Biobase preprocessCore]; };
   Repitools = derive2 { name="Repitools"; version="1.27.0"; sha256="1anh3fn4wyn69838y7jr5h6bhi8m7d7r1n68rbqvsvbr4bik54vr"; depends=[aroma_affymetrix BiocGenerics Biostrings BSgenome cluster DNAcopy edgeR GenomeInfoDb GenomicAlignments GenomicRanges gplots gsmoothr IRanges MASS Ringo Rsamtools Rsolnp rtracklayer S4Vectors]; };
   ReportingTools = derive2 { name="ReportingTools"; version="2.21.1"; sha256="0rdndxizkbx8bdjcx82x59y326ypsxrlmzyrgkgkmm3hgq041n97"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category DESeq2 edgeR ggbio ggplot2 GOstats GSEABase hwriter IRanges knitr lattice limma PFAM_db R_utils XML]; };
   Rgin = derive2 { name="Rgin"; version="1.1.0"; sha256="1yqif2dpw0c3p4kg8pni80ggh3f6430nd7k3k0fxirz74ljv642h"; depends=[RcppEigen]; };
-  Rgraphviz = derive2 { name="Rgraphviz"; version="2.25.0"; sha256="06kvi85d2wgm2v9pvxn9swrvi4cavww5idcc7gx4d80w4kwzhx5f"; depends=[graph]; };
-  Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.3.1"; sha256="1g25896i244fv2bpzd68sd542s2842fs39bssxdjd8fcshxkzy2v"; depends=[]; };
+  Rgraphviz = derive2 { name="Rgraphviz"; version="2.25.1"; sha256="1l98pa3zp18xp64phrp5k7sn9an3a8mqp124ik8a2gk8hs021glx"; depends=[graph]; };
+  Rhdf5lib = derive2 { name="Rhdf5lib"; version="1.3.3"; sha256="19r2afmvik4as8cwgk0adh3rm94bjp9vll3c63845swrsk13smzz"; depends=[]; };
   Rhtslib = derive2 { name="Rhtslib"; version="1.13.4"; sha256="0g60pz7ssy872ppws7qvsv7miph3yhx48p6sqmxi3qbz0qs6dq15"; depends=[zlibbioc]; };
   RiboProfiling = derive2 { name="RiboProfiling"; version="1.11.0"; sha256="0l76dfz2r2grx31v8ic80k3mry78m20znssrh5i7v6xfh33ghg6c"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr reshape2 Rsamtools rtracklayer S4Vectors sqldf]; };
   Ringo = derive2 { name="Ringo"; version="1.45.0"; sha256="0pwyfjv8f91g7i1h9qpzwgbkgyh04dyvmrm9v4rdabmfbhr38c6g"; depends=[Biobase BiocGenerics genefilter lattice limma Matrix RColorBrewer vsn]; };
-  Risa = derive2 { name="Risa"; version="1.23.0"; sha256="1kch6h68a6sxdrndqzxmqhyj5mv08iipdmv09z3hax7aw45lk08h"; depends=[affy Biobase biocViews Rcpp xcms]; };
+  Risa = derive2 { name="Risa"; version="1.23.2"; sha256="0ng31ms4ndfgwna99qqf73ad9klgi7d477x3my4wkd6896hk7xg3"; depends=[affy Biobase biocViews Rcpp xcms]; };
   Rmagpie = derive2 { name="Rmagpie"; version="1.37.0"; sha256="1qzxifxdkc86p4q8l7qz8bmxlh5an7zkmgbzb72chwm6bby774m8"; depends=[Biobase e1071 kernlab pamr]; };
   RmiR = derive2 { name="RmiR"; version="1.37.0"; sha256="0zz0jgqfqph0rhkbx0bgm8kcwm81hsk1cml8a917gfymfpzj93s8"; depends=[DBI RmiR_Hs_miRNA RSVGTipsDevice]; };
   Rmmquant = derive2 { name="Rmmquant"; version="0.99.11"; sha256="0lj7dnjf5msrn7fbr68krv2rgav8qrpahgj37qa64k5cn0xyiblw"; depends=[BiocStyle DESeq2 devtools GenomicRanges org_Mm_eg_db Rcpp S4Vectors SummarizedExperiment TBX20BamSubset TxDb_Mmusculus_UCSC_mm9_knownGene]; };
-  RnBeads = derive2 { name="RnBeads"; version="1.13.1"; sha256="146aziw6d7jalkjj81kgdkbnmzpvia8khgqkbpfngjykyykdgqy9"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; };
+  RnBeads = derive2 { name="RnBeads"; version="1.99.0"; sha256="1gmhq1rp5jlkm0dmbzzxzpylyxzpbf2529j3v7a37fq4pia0nylk"; depends=[BiocGenerics cluster ff fields GenomicRanges ggplot2 gplots gridExtra illuminaio IRanges limma MASS matrixStats methylumi plyr S4Vectors]; };
   RnaSeqSampleSize = derive2 { name="RnaSeqSampleSize"; version="1.13.0"; sha256="0d27jiw016fkmzpd4lsjnrkd122amqi37cr5rpnwviyw47rw5dxj"; depends=[biomaRt edgeR heatmap3 KEGGREST matlab Rcpp RnaSeqSampleSizeData]; };
   Rnits = derive2 { name="Rnits"; version="1.15.0"; sha256="0vg3rx87fw9y792b9icf1qliwsbi7h74csk7n9ya8jwjsyb0fcv2"; depends=[affy Biobase boot ggplot2 impute limma qvalue reshape2]; };
   Roleswitch = derive2 { name="Roleswitch"; version="1.19.0"; sha256="12pqrclq4vfsv0y9ykisri5l2zy3pz3sz22xqlqfkmlldqvngy4v"; depends=[Biobase biomaRt Biostrings DBI microRNA plotrix pracma reshape]; };
   RpsiXML = derive2 { name="RpsiXML"; version="2.23.0"; sha256="061r9c1lb3qrm4lwpk87ynsi6nqjwqv2cxk9z6l01b14cb2mn6r3"; depends=[annotate AnnotationDbi Biobase graph hypergraph RBGL XML]; };
-  Rqc = derive2 { name="Rqc"; version="1.15.0"; sha256="07zq9p2jkkzfjkccwryfh02xrz6bq20lw3z9v1pikk0dap6g1447"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase digest GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; };
-  Rsamtools = derive2 { name="Rsamtools"; version="1.33.0"; sha256="0qp084lwadvwngn98lmlj758yra7il5sykdnxj82a4llr38fwg20"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; };
-  Rsubread = derive2 { name="Rsubread"; version="1.31.5"; sha256="14azrcgip829pm1aa6yq2s50zghf83l7mn7pizc98qjrlkwbia89"; depends=[]; };
+  Rqc = derive2 { name="Rqc"; version="1.15.1"; sha256="0hb3115hrq4vgl32w01fagkbyisxxkbhs96fbxrz3rlkw982b636"; depends=[BiocGenerics BiocParallel BiocStyle Biostrings biovizBase digest GenomicAlignments GenomicFiles ggplot2 IRanges knitr markdown plyr Rcpp reshape2 Rsamtools S4Vectors shiny ShortRead]; };
+  Rsamtools = derive2 { name="Rsamtools"; version="1.33.7"; sha256="1jlhfjdby0cgsjfjcbf6kgcc8g1c6nfwlyp67yrn6x577cf9vl40"; depends=[BiocGenerics BiocParallel Biostrings bitops GenomeInfoDb GenomicRanges IRanges S4Vectors XVector zlibbioc]; };
+  Rsubread = derive2 { name="Rsubread"; version="1.31.23"; sha256="1n59sxlfmwvk9yfp88lcffbqpbxdg5b1hgawkz0d3sy9f4wv6vg1"; depends=[]; };
   Rtreemix = derive2 { name="Rtreemix"; version="1.43.0"; sha256="0wkszdsbpkai8snqvgr46mc0kqlgha76hclr4kbgddlbg9cmbymh"; depends=[Biobase graph Hmisc]; };
-  S4Vectors = derive2 { name="S4Vectors"; version="0.19.17"; sha256="1cqv7lcgrqbvffmi8xw0pwwl2k3s6kyyfx4dhj05w42r5ax9wk0k"; depends=[BiocGenerics]; };
+  S4Vectors = derive2 { name="S4Vectors"; version="0.19.24"; sha256="0r8plfk310jkymlpkxvkqh9b5y9xd00iy2jn28w5ajf7zxrdbxl2"; depends=[BiocGenerics]; };
   SAGx = derive2 { name="SAGx"; version="1.55.0"; sha256="1xriaf6qhmisx7415jgrpk6p0jhhv0mn3ab1zj4g6dvm495s0579"; depends=[Biobase multtest]; };
   SANTA = derive2 { name="SANTA"; version="2.19.0"; sha256="0qfzmsqssb62bab9csak82s0dhrrpz93q0825sdjk7sy2qnp3c6l"; depends=[igraph Matrix snow]; };
   SBMLR = derive2 { name="SBMLR"; version="1.77.0"; sha256="0xhs5adrirlplm8m3ldsw0m085wqi7mgjn3c7ldkhmlr9w9vc7wg"; depends=[deSolve XML]; };
   SC3 = derive2 { name="SC3"; version="1.9.1"; sha256="1nj5sjxgv0ic0s74w9vy3dwnrwywwj2kaydnn5s1p1hnrc6xsm11"; depends=[BiocGenerics cluster doParallel doRNG e1071 foreach ggplot2 pheatmap Rcpp RcppArmadillo robustbase ROCR rrcov S4Vectors shiny SingleCellExperiment SummarizedExperiment WriteXLS]; };
   SCAN_UPC = derive2 { name="SCAN.UPC"; version="2.23.0"; sha256="1l7h4r4msq8gdiklmnb8cnh29babknzsbncxg3qkrf28q6gihz29"; depends=[affy affyio Biobase Biostrings foreach GEOquery IRanges MASS oligo sva]; };
-  SCnorm = derive2 { name="SCnorm"; version="1.3.0"; sha256="0zij0ny8xnmxcci08br3vb10dfmsxp11mgfr6f5ga8s868n09260"; depends=[BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SummarizedExperiment]; };
-  SDAMS = derive2 { name="SDAMS"; version="1.1.0"; sha256="0z6ajklzq6srlx2r4ymgpsgfzzg5qzypcza7kh0zfahg2pb262w4"; depends=[qvalue SummarizedExperiment trust]; };
+  SCBN = derive2 { name="SCBN"; version="0.99.2"; sha256="10rcvn19k2034dgcc5lyv24ir5ql9qsikr5fplsp4qc4v9z8v658"; depends=[]; };
+  SCnorm = derive2 { name="SCnorm"; version="1.3.3"; sha256="0vbyvvx3pf5k9j9fy0jkfawic3l54kj5sjmsgb1bb6b5x1njdz0h"; depends=[BiocParallel cluster data_table forcats ggplot2 moments quantreg S4Vectors SingleCellExperiment SummarizedExperiment]; };
+  SDAMS = derive2 { name="SDAMS"; version="1.1.2"; sha256="0zd1y03g9dxflvj3adg2jqlzcipbaz87vm927l1cd3pdzgzvx294"; depends=[qvalue SummarizedExperiment trust]; };
   SELEX = derive2 { name="SELEX"; version="1.13.0"; sha256="0n2xpdyr6sy8mnbq9vqccaphfa5pjbldcnmpm4zb9w2zdg27g24k"; depends=[Biostrings rJava]; };
   SEPA = derive2 { name="SEPA"; version="1.11.0"; sha256="19904q9pxbxwaj8vfqk1nvwb5sn69g15zfk9xyb7wwnwxrrkph0r"; depends=[ggplot2 org_Hs_eg_db org_Mm_eg_db reshape2 segmented shiny topGO]; };
-  SEPIRA = derive2 { name="SEPIRA"; version="1.1.0"; sha256="0wxk45lp7gdnshr4w4205khkq6dn09p7vr77s9hdz8968wj0rzg3"; depends=[corpcor limma]; };
+  SEPIRA = derive2 { name="SEPIRA"; version="1.1.2"; sha256="1v6xqrvvnkf5r5cl6k4akq9450qhii0hwbysc76ndnwyc7lgmjws"; depends=[corpcor limma]; };
   SGSeq = derive2 { name="SGSeq"; version="1.15.0"; sha256="09ksqyszgh84lwv0vzy8kp4vdhczdqpk1mr7h18ja5rpilnk60r0"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges igraph IRanges Rsamtools rtracklayer RUnit S4Vectors SummarizedExperiment]; };
   SIAMCAT = derive2 { name="SIAMCAT"; version="1.1.0"; sha256="0aaw372yl2b74ni3hr788bqglma679vqfzhfad2903ln0lx54rl3"; depends=[beanplot glmnet gridBase gridExtra LiblineaR matrixStats mlr ParamHelpers phyloseq pROC PRROC RColorBrewer]; };
   SICtools = derive2 { name="SICtools"; version="1.11.0"; sha256="1jgq6acqqfx6fcwkyqn49p94m399dblc86s3hf7xgdml61jjxa81"; depends=[Biostrings doParallel GenomicRanges IRanges matrixStats plyr Rsamtools stringr]; };
   SIM = derive2 { name="SIM"; version="1.51.0"; sha256="0z23b4pgiyah5qcixhww7csmkq01gw0bd9hmzrwrn046yy3mmnql"; depends=[globaltest quantreg quantsmooth]; };
-  SIMAT = derive2 { name="SIMAT"; version="1.13.0"; sha256="0kac998ddp94qls9jd68bd32cvnkxzdk63ysrcliiwmxcpplymrq"; depends=[ggplot2 mzR Rcpp reshape2]; };
-  SIMLR = derive2 { name="SIMLR"; version="1.7.0"; sha256="0f8ds6qjkj2z79pl18pwgwsn5fp0k05s50kakfiy9cbmbhnqy9ik"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; };
+  SIMAT = derive2 { name="SIMAT"; version="1.13.4"; sha256="142lafcpbmfnx1ywwas9dba4gz2vxnds4pia4dcxya6r254pbw9b"; depends=[ggplot2 mzR Rcpp reshape2]; };
+  SIMD = derive2 { name="SIMD"; version="0.99.10"; sha256="17m05cvc1yzdjlyx7j971cais8lyacil2vjfl09vvj93ygfks1sy"; depends=[edgeR methylMnM statmod]; };
+  SIMLR = derive2 { name="SIMLR"; version="1.7.4"; sha256="0pgz774i1ffix5s37qxxm78wa283zaghshwrj1chqzsk2hw1vy21"; depends=[Matrix pracma Rcpp RcppAnnoy RSpectra]; };
   SISPA = derive2 { name="SISPA"; version="1.11.0"; sha256="1cw4xzcqjp8pdaglar9dfgr25zqyb6h31k3hn66hyxg9cyagj4k4"; depends=[changepoint data_table genefilter ggplot2 GSVA plyr]; };
   SLGI = derive2 { name="SLGI"; version="1.41.0"; sha256="0ihb43dmab2188641l5zpn98djj68mm5xq2v79wqrh136n9cam9j"; depends=[AnnotationDbi Biobase BiocGenerics GO_db lattice ScISI]; };
   SLqPCR = derive2 { name="SLqPCR"; version="1.47.0"; sha256="0m2qhkc6l158phg5hwfcs5wlq2n2nrhsjprrmzjv3q9rsdhwid8c"; depends=[]; };
   SMAP = derive2 { name="SMAP"; version="1.45.0"; sha256="1i94sywcxp3pg30b93v5p9n70va1mixk67jxxfyhc6dlbfpx7d3y"; depends=[]; };
   SMITE = derive2 { name="SMITE"; version="1.9.0"; sha256="1hvmbsz7p4ibjfh2a45aqpvv1kridkfg3zk3kzgbmws5l1vf154z"; depends=[AnnotationDbi Biobase BioNet geneLenDataBase GenomicRanges ggplot2 goseq Hmisc igraph IRanges KEGG_db org_Hs_eg_db plyr reactome_db S4Vectors scales]; };
   SNAGEE = derive2 { name="SNAGEE"; version="1.21.0"; sha256="0lsb2rqb1a3dgfgv5bijgb87y3zdl3mp1p38nzzi05n180yrgpzr"; depends=[SNAGEEdata]; };
-  SNPRelate = derive2 { name="SNPRelate"; version="1.15.0"; sha256="02xaxm3qrlgalndk4fmmvdy0rxpv565ysh2vc36gxcdvgz39pf1s"; depends=[gdsfmt]; };
+  SNPRelate = derive2 { name="SNPRelate"; version="1.15.5"; sha256="19lzy5jcp64kvg569x0688v03jalpbigmxpbaqsyc61j9h3gqkh7"; depends=[gdsfmt]; };
   SNPchip = derive2 { name="SNPchip"; version="2.27.0"; sha256="15cf2nrwixiqiyav5634qlv7md5dmv17h3z97j5771dv75fkl2gr"; depends=[Biobase foreach GenomeInfoDb GenomicRanges IRanges lattice oligoClasses S4Vectors SummarizedExperiment]; };
-  SNPediaR = derive2 { name="SNPediaR"; version="1.7.0"; sha256="0van1q586n5dd5snvhc3j7hkdhdwrmbky9mj1nfdfzgcdl7bnmk3"; depends=[jsonlite RCurl]; };
+  SNPediaR = derive2 { name="SNPediaR"; version="1.7.1"; sha256="1lly6gajffcia6kjb3bshy401w2ydrwj674kas3dipamchp7k7p9"; depends=[jsonlite RCurl]; };
   SNPhood = derive2 { name="SNPhood"; version="1.11.0"; sha256="03dami2l6y21fh7sazh3bzjhj1n9vqc0fva4ig1kkdansd1bvp0f"; depends=[BiocGenerics BiocParallel Biostrings checkmate cluster data_table DESeq2 GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges lattice RColorBrewer reshape2 Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; };
   SPEM = derive2 { name="SPEM"; version="1.21.0"; sha256="19l21yaqcazymnapqalrkb6az10jkmzy8zvp5wh28rb8bl2p88f3"; depends=[Biobase Rsolnp]; };
   SPIA = derive2 { name="SPIA"; version="2.33.0"; sha256="06si8xr8hc4sr87gafaphv9rfiq9w82gwd4xzwn0js00fgalffvd"; depends=[KEGGgraph]; };
-  SPLINTER = derive2 { name="SPLINTER"; version="1.7.2"; sha256="070ciavxg9y5mahaaaq7sbsz1zkv8llz69x6qvh332v0hchn29yg"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 Gviz IRanges plyr S4Vectors seqLogo stringr]; };
+  SPLINTER = derive2 { name="SPLINTER"; version="1.7.4"; sha256="007h0y808cylwkr9bjgsdvf4d4bfvz0xpalh06drq666cr9cxdzr"; depends=[biomaRt Biostrings BSgenome_Mmusculus_UCSC_mm9 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 googleVis Gviz IRanges plyr S4Vectors seqLogo stringr]; };
   SPONGE = derive2 { name="SPONGE"; version="1.3.0"; sha256="0xnrzzlm12rrr54ymfa10pcmzgq7njqhgynv9ki9msxrvn1rhcd4"; depends=[Biobase data_table doRNG expm foreach glmnet gRbase igraph iterators logging MASS ppcor]; };
   SQUADD = derive2 { name="SQUADD"; version="1.31.0"; sha256="0dh04i31lzdpkmqhawm1krn132hqj6qz5i6cj2sxxvk4chqq1xmf"; depends=[RColorBrewer]; };
   SRAdb = derive2 { name="SRAdb"; version="1.43.2"; sha256="01nr09lkm4lwc6p0mfl1nn8g4fkzsw8c157snkcclqzn829121bp"; depends=[GEOquery graph RCurl RSQLite]; };
@@ -701,81 +751,86 @@ in with self; {
   STAN = derive2 { name="STAN"; version="2.9.0"; sha256="0i8y0a2i60irdg3061l4fmwdmnfrf0fc5byhx1bwbr8w5g4ahpnh"; depends=[BiocGenerics GenomeInfoDb GenomicRanges Gviz IRanges poilog Rsolnp S4Vectors]; };
   STATegRa = derive2 { name="STATegRa"; version="1.17.1"; sha256="1k55kb5x108iq3f2hbbair96x9kn8cci0753jkmd485j3mizfqq4"; depends=[affy Biobase calibrate edgeR foreach ggplot2 gplots gridExtra limma MASS]; };
   STRINGdb = derive2 { name="STRINGdb"; version="1.21.0"; sha256="079y5h2jfx40vr5yvvpafzzld1z7jc9z98gm31qy7gvm2lyzvgl5"; depends=[gplots hash igraph plotrix plyr png RColorBrewer RCurl sqldf]; };
-  STROMA4 = derive2 { name="STROMA4"; version="1.5.0"; sha256="0b20pdxc3wsndqhhrxjayi3ldsjnim3cgswa73kjdpdrm3amsvy4"; depends=[Biobase BiocParallel cluster matrixStats]; };
+  STROMA4 = derive2 { name="STROMA4"; version="1.5.2"; sha256="1c7cjzrvbb62j8lyq8fn6xl375yhzghw1a4zy6pp0s8sd1r6vpmn"; depends=[Biobase BiocParallel cluster matrixStats]; };
   SVAPLSseq = derive2 { name="SVAPLSseq"; version="1.7.0"; sha256="0g27ik0m7z6wya7z2xgaip0c8dingv1c2jq9qbwpwipvk2yl8f50"; depends=[edgeR ggplot2 limma lmtest pls SummarizedExperiment]; };
   SVM2CRM = derive2 { name="SVM2CRM"; version="1.13.0"; sha256="0bnd0bpxwd2c33xdp9bfn8lsvf9dm8an4n43py6akshf6q2l9x3y"; depends=[AnnotationDbi GenomicRanges IRanges LiblineaR mclust pls ROCR rtracklayer squash SVM2CRMdata verification zoo]; };
-  SWATH2stats = derive2 { name="SWATH2stats"; version="1.11.4"; sha256="144p070bcq5j45byw9z666qkzjk8c4brscl4pnsgkghzgiv7fg34"; depends=[biomaRt data_table ggplot2 reshape2]; };
+  SWATH2stats = derive2 { name="SWATH2stats"; version="1.11.7"; sha256="1j8c18kiijzz1sc28n4asspljdgxmd000ms6qq5pzac36gkjwn98"; depends=[biomaRt data_table ggplot2 reshape2]; };
   SamSPECTRAL = derive2 { name="SamSPECTRAL"; version="1.35.2"; sha256="0dzapl17bgykgsd9qapc1v0ihzn229n25zvagjp1kdx3r4jqmkbb"; depends=[]; };
   ScISI = derive2 { name="ScISI"; version="1.53.0"; sha256="02m4ma2izak4vg4240hnny0b84x440myayjwqcysg8r5gr6pzd83"; depends=[annotate AnnotationDbi apComplex GO_db org_Sc_sgd_db RpsiXML]; };
   Scale4C = derive2 { name="Scale4C"; version="1.3.0"; sha256="1a97dchcinhp24k0r5f7agca33zk3qyh1scz8250aiilhfa4w37y"; depends=[GenomicRanges IRanges smoothie SummarizedExperiment]; };
-  Sconify = derive2 { name="Sconify"; version="1.1.0"; sha256="0is0ix7591gjzpbnv388gnr2jnxbpbjvywv3ln61ign9p5h9gjva"; depends=[dplyr flowCore ggplot2 magrittr readr Rtsne tibble]; };
-  SemDist = derive2 { name="SemDist"; version="1.15.0"; sha256="1rfmlihgk2wa1z3a2yqp43nddxw4nmjaybv9jvp84b0yi3drvn8z"; depends=[annotate AnnotationDbi GO_db]; };
-  SeqArray = derive2 { name="SeqArray"; version="1.21.2"; sha256="0kkci67zrxlyhkbap9khn8655wl63h33004gkxzz1b3drvn0a95b"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
+  Sconify = derive2 { name="Sconify"; version="1.1.3"; sha256="1v5g6w51xfh8gs026k68lhrkzp4fkd5bwkjr7vxlbxggwp523sia"; depends=[dplyr flowCore FNN ggplot2 magrittr readr Rtsne tibble]; };
+  SemDist = derive2 { name="SemDist"; version="1.15.2"; sha256="1mqv1xj3wwadrvf7qv2fpqhjgmvlipsy8afljl67i2y5ik025svi"; depends=[annotate AnnotationDbi GO_db]; };
+  SeqArray = derive2 { name="SeqArray"; version="1.21.8"; sha256="03mv656dyvpxpqpxayr0d5zd47zjk0rn20jj58ma0cyln2a1rly8"; depends=[Biostrings gdsfmt GenomeInfoDb GenomicRanges IRanges S4Vectors]; };
   SeqGSEA = derive2 { name="SeqGSEA"; version="1.21.0"; sha256="10900fdl0g6izlpxwc3x2yix3cxpqfx6xxvbdq66mx2zqaksrq88"; depends=[Biobase biomaRt DESeq doParallel]; };
-  SeqSQC = derive2 { name="SeqSQC"; version="1.3.0"; sha256="19jv3yyga2fxpndi0rr36vrjz694l97aabr3llkcw7a6mgk78g12"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; };
-  SeqVarTools = derive2 { name="SeqVarTools"; version="1.19.2"; sha256="18l60hwj04hr8yln8rm1g0s71axxhnpkzn1khfr0v872csi57m8p"; depends=[Biobase dplyr gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray tidyr]; };
+  SeqSQC = derive2 { name="SeqSQC"; version="1.3.1"; sha256="0avzc9h0xabr2j54gbfpbj5dvf0yr690ckzj9phqz1g4xj16sa25"; depends=[e1071 ExperimentHub gdsfmt GenomicRanges GGally ggplot2 IRanges rbokeh RColorBrewer reshape2 rmarkdown S4Vectors SNPRelate]; };
+  SeqVarTools = derive2 { name="SeqVarTools"; version="1.19.4"; sha256="0cqf6lmqa0r9rzslcgrvfislkmf0cx5ylp6mqqxfzi09q7f74s6q"; depends=[Biobase dplyr gdsfmt GenomicRanges GWASExactHW IRanges logistf Matrix S4Vectors SeqArray tidyr]; };
   ShortRead = derive2 { name="ShortRead"; version="1.39.0"; sha256="1cwpd5xf40gwpcnwmvxysxsl21cgfx3rdgigrawlzlzfd7j9kdig"; depends=[Biobase BiocGenerics BiocParallel Biostrings GenomeInfoDb GenomicAlignments GenomicRanges hwriter IRanges lattice latticeExtra Rsamtools S4Vectors XVector zlibbioc]; };
   SigCheck = derive2 { name="SigCheck"; version="2.13.0"; sha256="1cbdry06knmycqyc7p0z598rxlyyrw6yc8an8qm74b9p8vbnwp1a"; depends=[Biobase BiocParallel e1071 MLInterfaces survival]; };
   SigFuge = derive2 { name="SigFuge"; version="1.19.0"; sha256="07j9nzw5c4g99yf458n8jwkndr79mam2n4a6kcz9fpcsyjq4plp4"; depends=[GenomicRanges ggplot2 matlab reshape sigclust]; };
   SimBindProfiles = derive2 { name="SimBindProfiles"; version="1.19.0"; sha256="0916ml80crldixb8jn5sbzp156ba0r9lc7wc2ri8wmrslv3w97lv"; depends=[Biobase limma mclust Ringo]; };
-  SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.3.6"; sha256="0rlww0zvrkfjpx68qafvakbaa5lcjlyrp0phrsji4zh5niv0sy4x"; depends=[BiocGenerics S4Vectors SummarizedExperiment]; };
+  SingleCellExperiment = derive2 { name="SingleCellExperiment"; version="1.3.12"; sha256="1f4c1ma86rzxxqfmyr6w29fmclm6yrmlinkvsdfs8g5ynvlr272m"; depends=[BiocGenerics S4Vectors SummarizedExperiment]; };
   SomaticSignatures = derive2 { name="SomaticSignatures"; version="2.17.0"; sha256="1xq3m2i0b9rklg741796i8n1x0d07mn3xbdmvlc3islh368661jw"; depends=[Biobase Biostrings GenomeInfoDb GenomicRanges ggbio ggplot2 IRanges NMF pcaMethods proxy reshape2 S4Vectors VariantAnnotation]; };
-  SpacePAC = derive2 { name="SpacePAC"; version="1.19.0"; sha256="10g626vyxaidiypjwymk183hvn4nm2vayvka127aavpfaq4ka55r"; depends=[iPAC]; };
-  SparseSignatures = derive2 { name="SparseSignatures"; version="1.1.0"; sha256="1yhk7grm59ba7d7zwbqa9wlc00jzng9gdbaprpq9r5j6kj61id1z"; depends=[Biostrings BSgenome BSgenome_Hsapiens_1000genomes_hs37d5 data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls]; };
+  SpacePAC = derive2 { name="SpacePAC"; version="1.19.3"; sha256="0i74bxw99bbs83zvs625pxqbjgkcp0jw076g3j6k5mqlhq98bj7i"; depends=[iPAC]; };
+  SparseSignatures = derive2 { name="SparseSignatures"; version="1.1.5"; sha256="148x34p90x90lkl1ijj0s9gab3k295dbw2hyyy2hmx6hsmvp6hbl"; depends=[Biostrings BSgenome BSgenome_Hsapiens_1000genomes_hs37d5 data_table GenomeInfoDb GenomicRanges ggplot2 gridExtra IRanges NMF nnlasso nnls]; };
   SpeCond = derive2 { name="SpeCond"; version="1.35.0"; sha256="0sqb84sa7yf34lwwkchh5wb3dp6n4wk8kzqmsydx5lsaz6fxg32r"; depends=[Biobase fields hwriter mclust RColorBrewer]; };
-  SpidermiR = derive2 { name="SpidermiR"; version="1.11.0"; sha256="1gjjibc2lck5ihjm9k6vh032igvr5zw8dp1r0561cq00sd8w1y2v"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra miRNAtap miRNAtap_db networkD3 org_Hs_eg_db TCGAbiolinks visNetwork]; };
+  SpidermiR = derive2 { name="SpidermiR"; version="1.11.1"; sha256="0mxl07rzcs9agly7hx8f1xyjwfv8bi7yq93y2jzw0bfmxnn7b0rr"; depends=[AnnotationDbi gdata ggplot2 gplots gridExtra httr igraph lattice latticeExtra miRNAtap miRNAtap_db networkD3 org_Hs_eg_db TCGAbiolinks visNetwork]; };
   SplicingGraphs = derive2 { name="SplicingGraphs"; version="1.21.0"; sha256="08n37qnhfk6j6gf0scm5m6i7q8ags821v4lp8aw670kij8xm4j5w"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph igraph IRanges Rgraphviz Rsamtools S4Vectors]; };
-  StarBioTrek = derive2 { name="StarBioTrek"; version="1.7.0"; sha256="1fv0xdgzjmmsla8265732vc31drpija8wfdigg5cjhh89mrlpgfm"; depends=[AnnotationDbi e1071 igraph KEGGREST org_Hs_eg_db ROCR SpidermiR]; };
+  StarBioTrek = derive2 { name="StarBioTrek"; version="1.7.1"; sha256="14a7rj8386iaqi3l47ahkpijh7bwwr8sir9ncmzj55fvk3m7c05g"; depends=[AnnotationDbi e1071 igraph KEGGREST org_Hs_eg_db ROCR SpidermiR]; };
   Starr = derive2 { name="Starr"; version="1.37.0"; sha256="0is2fy9zf2cgl3ywkn89v7n134sh812gibr3mpb8iccplvis7dks"; depends=[affxparser affy MASS pspline Ringo zlibbioc]; };
   Streamer = derive2 { name="Streamer"; version="1.27.0"; sha256="14wdvp51cgmzahqqr9dv5whgrl85yjj72sj1v3kqislqvfkn7lww"; depends=[BiocGenerics graph RBGL]; };
-  SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="1.99.1"; sha256="1madkjzhjlv7hh5av4pwkjk35vdmc5pcdsy70fngck4kvrhbs28z"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; };
-  SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.11.5"; sha256="19qrcp3psnx3dpkcif3i0dy8fgn4nwliqii8v7mjllh2v6vz71x4"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix S4Vectors]; };
-  Sushi = derive2 { name="Sushi"; version="1.19.0"; sha256="1pqgrjprsifbf6whzw4y01sqwal35c160ibg49d5rn1r22lyqkc2"; depends=[biomaRt zoo]; };
-  SwathXtend = derive2 { name="SwathXtend"; version="2.3.0"; sha256="1fzkbl4rl3w04z449m3y4dwq4lmqjll0xsqg88kr1jy7k0bzhfnv"; depends=[e1071 lattice openxlsx VennDiagram]; };
-  SwimR = derive2 { name="SwimR"; version="1.19.0"; sha256="03qv3hcky138x449s5axc8j37j45hpalibmwwa3zd5a4fa15zmqr"; depends=[gplots heatmap_plus R2HTML signal]; };
-  TCC = derive2 { name="TCC"; version="1.21.1"; sha256="0p2cphkmzlpzqy2shszyzwxga35hyp0q8n0aj9hbjzvapnil61pg"; depends=[baySeq DESeq DESeq2 edgeR ROC samr]; };
-  TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.9.2"; sha256="1jbgv3p5dqhjkm5spn6x73z00ghjb1i4fbmn9xpns0v93axmd1k8"; depends=[biomaRt circlize ComplexHeatmap ConsensusClusterPlus data_table doParallel downloader dplyr EDASeq edgeR genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel ggthemes gridExtra httr IRanges jsonlite knitr limma matlab plyr R_utils RColorBrewer readr rvest S4Vectors scales selectr stringr SummarizedExperiment survival survminer sva tibble XML xml2]; };
-  TCGAutils = derive2 { name="TCGAutils"; version="1.1.11"; sha256="1dmsjw34shqjhj59g4r3320pgh2hlssp8yb12mhcf21xs95a6pql"; depends=[BiocGenerics GenomeInfoDb GenomicDataCommons GenomicRanges IRanges MultiAssayExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; };
+  SummarizedBenchmark = derive2 { name="SummarizedBenchmark"; version="1.99.3"; sha256="00a6wnysxmxlanjh8zy3bycl9grvzlpsfc7p8qnslyz446dnqdp8"; depends=[BiocGenerics BiocParallel crayon digest dplyr ggplot2 mclust rlang S4Vectors sessioninfo stringr SummarizedExperiment tibble tidyr UpSetR]; };
+  SummarizedExperiment = derive2 { name="SummarizedExperiment"; version="1.11.6"; sha256="1wzp1yvn5vrfrr54v208i63rvb9awv7aplppv3lvwgk0j09hl4hh"; depends=[Biobase BiocGenerics DelayedArray GenomeInfoDb GenomicRanges IRanges Matrix S4Vectors]; };
+  Sushi = derive2 { name="Sushi"; version="1.19.2"; sha256="12dz0l0lkvayqcvr21i2jdlpbfpvvd3rnzchar2yq7k7cwwa3v9s"; depends=[biomaRt zoo]; };
+  SwathXtend = derive2 { name="SwathXtend"; version="2.3.1"; sha256="185rdcmdrahcmga3rkqniszg2i6scynspf7hh77q1ld7hi62ikcq"; depends=[e1071 lattice openxlsx VennDiagram]; };
+  SwimR = derive2 { name="SwimR"; version="1.19.1"; sha256="1nbcan63p8jplrc1w7ljkmfisczgi9jg5rasdfm2iws5azpa36w9"; depends=[gplots heatmap_plus R2HTML signal]; };
+  TCC = derive2 { name="TCC"; version="1.21.5"; sha256="140fhqn6yk8yayqhq47zpb6g3a1pwqhxdi6np5szz1h45scxzw01"; depends=[baySeq DESeq DESeq2 edgeR ROC]; };
+  TCGAbiolinks = derive2 { name="TCGAbiolinks"; version="2.9.5"; sha256="1lw67yvmhh24yh6rhanvpxp1ma9qwy8klia4py29jskw86vva3ca"; depends=[biomaRt circlize ComplexHeatmap ConsensusClusterPlus data_table doParallel downloader dplyr EDASeq edgeR genefilter GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 ggrepel ggthemes gridExtra httr IRanges jsonlite knitr limma matlab plyr R_utils RColorBrewer readr rvest S4Vectors scales selectr stringr SummarizedExperiment survival survminer sva tibble XML xml2]; };
+  TCGAbiolinksGUI = derive2 { name="TCGAbiolinksGUI"; version="1.7.3"; sha256="0h4cax1nl2f1ly5q7019jsadfmpva5ykg3qhz9zak8vph8jbwxyv"; depends=[caret clusterProfiler colourpicker data_table downloader DT ELMER ggplot2 ggrepel IlluminaHumanMethylation27kanno_ilmn12_hg19 IlluminaHumanMethylation27kmanifest IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest maftools minfi pathview plotly readr shiny shinyBS shinydashboard shinyFiles shinyjs stringr SummarizedExperiment TCGAbiolinks TCGAbiolinksGUI_data]; };
+  TCGAutils = derive2 { name="TCGAutils"; version="1.1.24"; sha256="1564ssv2f3xkc0lg4k8a4jlccbad9y8zbqx2iyy9ib31rjcysswj"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicDataCommons GenomicFeatures GenomicRanges IRanges MultiAssayExperiment RaggedExperiment rvest S4Vectors stringr SummarizedExperiment xml2]; };
   TCseq = derive2 { name="TCseq"; version="1.5.0"; sha256="1xir0481s72jwp0jnrb9134pv9vwy3g8mhk0rpzwr4qvxxxy7zxn"; depends=[BiocGenerics cluster e1071 edgeR GenomicAlignments GenomicRanges ggplot2 IRanges locfit reshape2 Rsamtools SummarizedExperiment]; };
   TDARACNE = derive2 { name="TDARACNE"; version="1.31.0"; sha256="19qk0kc7yi4z8kqg7a9msxdiazad3y7xvshmf6pk0999ypacqws4"; depends=[Biobase GenKern Rgraphviz]; };
   TEQC = derive2 { name="TEQC"; version="4.3.0"; sha256="1ldjq8ap4si95zqywhp27rzd8kgij2p9hvcb0w8qvzw2ndk950z4"; depends=[Biobase BiocGenerics hwriter IRanges Rsamtools]; };
   TFARM = derive2 { name="TFARM"; version="1.3.0"; sha256="1c4gks6kvp8x68vnq7npxbq0q94gavbxvx3155prvx5qhsxw4jb8"; depends=[arules fields GenomicRanges stringr]; };
-  TFBSTools = derive2 { name="TFBSTools"; version="1.19.1"; sha256="1mi591pydgvkj5qzjlssg1lqrkgn2in8cj43af1nm9am7l92gwkw"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; };
-  TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.1.0"; sha256="07vwxy4sv8d8ij3cp7p17pvdf1nwbq883iqdjpcfb57ah67ffcx2"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils TxDb_Hsapiens_UCSC_hg19_knownGene]; };
+  TFBSTools = derive2 { name="TFBSTools"; version="1.19.3"; sha256="1zv3wid1jbjd8gn789an6khhsjw6kj10xzs1l2k3vji2ma4by4xd"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome caTools CNEr DBI DirichletMultinomial GenomeInfoDb GenomicRanges gtools IRanges RSQLite rtracklayer S4Vectors seqLogo TFMPvalue XML XVector]; };
+  TFEA_ChIP = derive2 { name="TFEA.ChIP"; version="1.1.1"; sha256="0n71va6mqdcgqagjr2ga5g7zrbp1a3xnl4hh3yjzsaa1g5fyx1yz"; depends=[biomaRt dplyr GenomicFeatures GenomicRanges IRanges org_Hs_eg_db R_utils TxDb_Hsapiens_UCSC_hg19_knownGene]; };
   TFHAZ = derive2 { name="TFHAZ"; version="1.3.0"; sha256="1j03dp2n459b373ig3yds88f1x5yawr9jqr91w2s8smx5vqqicm8"; depends=[GenomicRanges IRanges S4Vectors]; };
-  TFutils = derive2 { name="TFutils"; version="1.1.0"; sha256="04q54z0hrskz3grw1ayzvcj93r3ziba01sx359c9syh6hbwzl5cd"; depends=[AnnotationDbi AnnotationFilter Biobase data_table dplyr GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges GSEABase Gviz IRanges magrittr miniUI Rsamtools S4Vectors shiny]; };
+  TFutils = derive2 { name="TFutils"; version="1.1.9"; sha256="097fn90mzyafhw27hc3m0dwyls7fc5d5c4rsrp0ris90c5m9lwbb"; depends=[dplyr magrittr miniUI shiny]; };
   TIN = derive2 { name="TIN"; version="1.13.0"; sha256="0iphf37gff3m1hyvijbbpp46bmjvwdppqrrwgf1yj660r01cyvyl"; depends=[aroma_affymetrix data_table impute squash stringr WGCNA]; };
   TMixClust = derive2 { name="TMixClust"; version="1.3.0"; sha256="1ga7mxlaxv4hglixlqa3kjrvqikzc46mrs1435aihhf649h8zz6j"; depends=[Biobase BiocParallel cluster flexclust gss mvtnorm SPEM zoo]; };
-  TPP = derive2 { name="TPP"; version="3.9.1"; sha256="183qdgly3a4xxiv1y8ckcm890dkg5rqyl99ab6pdgk3g53mx3pva"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown sme stringr tidyr VennDiagram VGAM]; };
-  TRONCO = derive2 { name="TRONCO"; version="2.13.0"; sha256="117vq5ia5q68z5ymbvi5y010l4qpwxsbwm9xxx5jl49a86np8s6f"; depends=[bnlearn cgdsr circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; };
+  TPP = derive2 { name="TPP"; version="3.9.6"; sha256="152hnfxadkcr0dirwxjx428r94pxsmb2j8fpw89mnblr0l28y36g"; depends=[Biobase biobroom broom data_table doParallel dplyr foreach futile_logger ggplot2 gridExtra knitr limma magrittr MASS mefa nls2 openxlsx plyr purrr RColorBrewer RCurl reshape2 rmarkdown sme stringr tidyr VennDiagram VGAM]; };
+  TRONCO = derive2 { name="TRONCO"; version="2.13.3"; sha256="0s57yxz8kdjg2rs3njlay7fan4v241nq6aqv9g08wkhnd60220av"; depends=[bnlearn cgdsr circlize doParallel foreach gridExtra gtable gtools igraph iterators R_matlab RColorBrewer Rgraphviz scales xtable]; };
   TSCAN = derive2 { name="TSCAN"; version="1.19.0"; sha256="05zkydpl57j6b02bq0v3896612lbq33jbm896kimygbk4k2wa3g5"; depends=[combinat fastICA ggplot2 gplots igraph mclust mgcv plyr shiny]; };
-  TSRchitect = derive2 { name="TSRchitect"; version="1.7.1"; sha256="06vzd7vs9ld714jhzdd46ippdmzmwfg705kky2wrcz6lq547llgp"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
+  TSRchitect = derive2 { name="TSRchitect"; version="1.7.2"; sha256="0fprnylwnwrbya0zpya578ljxwj2xbrnbwwc9qb31nanhwr7p68a"; depends=[AnnotationHub BiocGenerics BiocParallel GenomeInfoDb GenomicAlignments GenomicRanges gtools IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
   TSSi = derive2 { name="TSSi"; version="1.27.0"; sha256="1a4xvqmbx2wlhad1pb6013sas5gqm27kc7jhyqp49ccbwm7ayz4r"; depends=[Biobase BiocGenerics Hmisc IRanges minqa plyr S4Vectors]; };
   TTMap = derive2 { name="TTMap"; version="1.3.0"; sha256="0fg0d930icbm62rvfv0d177ld126f1shm5knird50da4vx3qr1a9"; depends=[Biobase colorRamps rgl SummarizedExperiment]; };
   TVTB = derive2 { name="TVTB"; version="1.7.0"; sha256="1514rfqdrp3s1z4zf53zprslqdbsdl1w3crfbqgsv6hisqrrwlm2"; depends=[AnnotationFilter BiocGenerics BiocParallel Biostrings ensembldb ensemblVEP GenomeInfoDb GenomicRanges GGally ggplot2 Gviz IRanges limma reshape2 Rsamtools S4Vectors SummarizedExperiment VariantAnnotation]; };
-  TarSeqQC = derive2 { name="TarSeqQC"; version="1.11.0"; sha256="1gbvfn5vpsbfbvpif8lvq55aav6ak619s1f743c7xj9md84rhx59"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; };
+  TarSeqQC = derive2 { name="TarSeqQC"; version="1.11.2"; sha256="0h8vpdy4ja0i8jpdk87qk2dkfrz4izg2m7lgqx18fl490plii1bk"; depends=[BiocGenerics BiocParallel Biostrings cowplot GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 Hmisc IRanges openxlsx plyr reshape2 Rsamtools S4Vectors]; };
   TargetScore = derive2 { name="TargetScore"; version="1.19.0"; sha256="1phdg2ncvsjgjsfggxv37n74fwj8asw73vccb8iaqj8x7vlkci85"; depends=[Matrix pracma]; };
-  TargetSearch = derive2 { name="TargetSearch"; version="1.37.2"; sha256="065nq07xwdb8s7n4gg0bwdpbasdank6ga9nza25x0lsf1m4kky8r"; depends=[ncdf4]; };
-  TissueEnrich = derive2 { name="TissueEnrich"; version="1.1.0"; sha256="12j0wkw964pbq62hiiavjk172hr3yp333v6c6g5kxmv2vycbxb3m"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; };
-  TitanCNA = derive2 { name="TitanCNA"; version="1.19.0"; sha256="12c30v6f9i841jyfprn3bxm9dimczwvn5d846kjxmpghf3dgdlgi"; depends=[data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges Rsamtools VariantAnnotation]; };
+  TargetSearch = derive2 { name="TargetSearch"; version="1.37.8"; sha256="1cgk9sg5d0m0njs75lj5c9kz5agyy89xn4vfznh2j06w6l60dvil"; depends=[ncdf4]; };
+  TissueEnrich = derive2 { name="TissueEnrich"; version="1.1.9"; sha256="11254f58mqhwa54kz83iac5sblcbpz6myw8gkwg06gx393yald22"; depends=[dplyr ensurer ggplot2 GSEABase SummarizedExperiment tidyr]; };
+  TitanCNA = derive2 { name="TitanCNA"; version="1.19.1"; sha256="0j84k2bysiizbzr5mfsnv7xmcmi74m7x8a14i375mahp6x9krp4v"; depends=[data_table dplyr foreach GenomeInfoDb GenomicRanges IRanges Rsamtools VariantAnnotation]; };
+  TnT = derive2 { name="TnT"; version="1.3.6"; sha256="0j64j32v1d83qqil3bfb6zxlp4k92qr6khzak5lkk7vdkhpbpckk"; depends=[Biobase data_table GenomeInfoDb GenomicRanges htmlwidgets IRanges jsonlite knitr S4Vectors]; };
   ToPASeq = derive2 { name="ToPASeq"; version="1.15.1"; sha256="13wzyspyipi122g976hp2haqyjhhgnwpaj844w2by8x65nh1hicl"; depends=[graph graphite Rcpp]; };
-  TransView = derive2 { name="TransView"; version="1.25.0"; sha256="1vlfncr2qv03r0b695ya47dd6h2m6qcvzndag1rqi5zzdn6p0w4q"; depends=[BiocGenerics GenomicRanges gplots IRanges Rsamtools S4Vectors zlibbioc]; };
-  Trendy = derive2 { name="Trendy"; version="1.3.2"; sha256="09r1slmx8cr8hc8nz5kkhd25mp19nk3mvlsg3c15lx39n5pimnhs"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; };
+  TransView = derive2 { name="TransView"; version="1.25.2"; sha256="0b1bx8smkfp5a282rrmlmqgfgfkiqsvzn6jnkvgn4v3pq7w3752c"; depends=[BiocGenerics GenomicRanges gplots IRanges Rsamtools S4Vectors zlibbioc]; };
+  Trendy = derive2 { name="Trendy"; version="1.3.11"; sha256="01k4ryaymr3c6m3gfdqv1wq8g47x5sr4vcnp6x92gcnncmm8m1qh"; depends=[BiocParallel DT gplots magrittr S4Vectors segmented shiny shinyFiles SummarizedExperiment]; };
   TurboNorm = derive2 { name="TurboNorm"; version="1.29.0"; sha256="15k6cxxwjkb56r9b1r17va2ssq4da7z72dvvgj91bd3x6vqph13q"; depends=[affy convert lattice limma marray]; };
-  TxRegInfra = derive2 { name="TxRegInfra"; version="1.1.2"; sha256="18ymkwfarxfh56y4gg2fh72fccgi2xyjnb4091bgfsg8nvib6wbv"; depends=[BiocParallel GenomeInfoDb GenomicRanges IRanges mongolite RaggedExperiment rjson S4Vectors SummarizedExperiment]; };
+  TxRegInfra = derive2 { name="TxRegInfra"; version="1.1.4"; sha256="1fv107daivcila7j3wkgc413138jza7s8x5g9ksgyr8kxjfs9w7b"; depends=[BiocParallel GenomeInfoDb GenomicRanges IRanges mongolite RaggedExperiment rjson S4Vectors SummarizedExperiment]; };
   TypeInfo = derive2 { name="TypeInfo"; version="1.47.0"; sha256="1nh15bs814s09cck4829r48n18g0w4haglbn826razjrcj5k46y0"; depends=[]; };
   UNDO = derive2 { name="UNDO"; version="1.23.0"; sha256="0csl0kh2ksswmv53cmy10b35ns5l9yg917m99f9pjrnql1n3ciq6"; depends=[Biobase BiocGenerics boot MASS nnls]; };
-  Ularcirc = derive2 { name="Ularcirc"; version="0.99.20"; sha256="1i48shbv1cwl1z4czpzc53iyab0d04aqw4w27w9cnvzxqs9fc0aj"; depends=[AnnotationHub Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicFeatures gsubfn httpuv mirbase_db moments shiny shinyFiles Sushi yaml]; };
-  UniProt_ws = derive2 { name="UniProt.ws"; version="2.21.3"; sha256="1ifzfghq7kk6s3wagjsvc1qz9gldfypgmniiw8pcsm1sji1y31ps"; depends=[AnnotationDbi BiocFileCache BiocGenerics rappdirs RCurl RSQLite]; };
-  Uniquorn = derive2 { name="Uniquorn"; version="2.1.0"; sha256="0livhr3kqjhh7s45fahvmshk7f6bbakpx58x16l7vclb1dlzkhii"; depends=[data_table doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; };
-  VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.27.1"; sha256="1m3bjqif7kwnwwry5zdm74jysq8pnxzkgkdf75bjgw08gg6ykd6j"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; };
-  VariantFiltering = derive2 { name="VariantFiltering"; version="1.17.1"; sha256="0gfvnbs9wh4g3z029b6h5pjky84iz4i9ijmg0kz83v2xybnv1n34"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; };
+  Ularcirc = derive2 { name="Ularcirc"; version="0.99.24"; sha256="0dq4lwx2q6lga1cd9smqrmngvsd26xj83amfhg8192jg6jys9i70"; depends=[AnnotationHub Biostrings BSgenome data_table DT GenomeInfoDb GenomeInfoDbData GenomicFeatures gsubfn httpuv mirbase_db moments shiny shinyFiles Sushi yaml]; };
+  UniProt_ws = derive2 { name="UniProt.ws"; version="2.21.4"; sha256="1dsz47zs47mqrijiybs4p1syrf975ff2g1waxpcixbi3jr20gq80"; depends=[AnnotationDbi BiocFileCache BiocGenerics rappdirs RCurl RSQLite]; };
+  Uniquorn = derive2 { name="Uniquorn"; version="2.1.4"; sha256="13xgw133kbrmm1idb21hdgm2mn619gvwq1k5bk6nw9m3qcwnp69l"; depends=[data_table doParallel foreach GenomicRanges IRanges R_utils stringr VariantAnnotation WriteXLS]; };
+  VanillaICE = derive2 { name="VanillaICE"; version="1.43.4"; sha256="0wdmcmynsrk6ir4sxmgdpvsfdqnb1cgjc3n7vvsa8rsa6b22a15d"; depends=[Biobase BiocGenerics BSgenome_Hsapiens_UCSC_hg18 crlmm data_table foreach GenomeInfoDb GenomicRanges IRanges lattice matrixStats oligoClasses S4Vectors SummarizedExperiment]; };
+  VariantAnnotation = derive2 { name="VariantAnnotation"; version="1.27.9"; sha256="0vh50jil9ksjs6d9d9f457v31s8l4rn8cdm0wamj71gcdmp9x2f7"; depends=[AnnotationDbi Biobase BiocGenerics Biostrings BSgenome DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors SummarizedExperiment XVector zlibbioc]; };
+  VariantFiltering = derive2 { name="VariantFiltering"; version="1.17.3"; sha256="16jgpja0mxlb2sny6ccnc4aqvgxkl1kna3j8dnn5gyxbd11vzxri"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicFeatures GenomicRanges GenomicScores graph Gviz IRanges RBGL Rsamtools S4Vectors shiny shinyjs shinythemes shinyTree SummarizedExperiment VariantAnnotation XVector]; };
   VariantTools = derive2 { name="VariantTools"; version="1.23.0"; sha256="1kr4w5c1rwsamb168ahj74f379rk87qldm2mivhn73zq75qrawaf"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicFeatures GenomicRanges IRanges Matrix Rsamtools rtracklayer S4Vectors VariantAnnotation]; };
-  Vega = derive2 { name="Vega"; version="1.29.0"; sha256="1zjdhszz65wpjirakkl53a4jqh43z6ryvndf0hxal4gc586gifcd"; depends=[]; };
-  VegaMC = derive2 { name="VegaMC"; version="3.19.0"; sha256="1c4vfm2vv2xm6yw2ca57ml9bn6n9ddc2p8pcbxivxkxc8b5n2ysn"; depends=[Biobase biomaRt genoset]; };
-  XBSeq = derive2 { name="XBSeq"; version="1.13.0"; sha256="014c96hz2nqjz865xmbhcsqqxxgssd9rn1j1pgmxakkz87mcnvji"; depends=[Biobase DESeq2 dplyr ggplot2 locfit magrittr matrixStats pracma roar]; };
-  XDE = derive2 { name="XDE"; version="2.27.0"; sha256="1mls0fx2z2n7izmrmhpv6jg87x36d1j9x6gq51hhkzw5rbq25ng6"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools MergeMaid mvtnorm RColorBrewer siggenes]; };
-  XVector = derive2 { name="XVector"; version="0.21.3"; sha256="12p9s5d10cpm86v202gdw6y9gnsmcsny43gv6qnhz48ilzwql4mc"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; };
+  Vega = derive2 { name="Vega"; version="1.29.1"; sha256="04yvxrv7m78dxg2k7pjcz6hz4clywb2lrldqs6pixyli2ifal8fq"; depends=[]; };
+  VegaMC = derive2 { name="VegaMC"; version="3.19.1"; sha256="1dah8j41qd9ym00nlv8k0kpz3vsl7y3f6h4nyzv8bwa3nf9ip9qy"; depends=[Biobase biomaRt genoset]; };
+  Wrench = derive2 { name="Wrench"; version="0.99.10"; sha256="1wm4zrh8wiyvjw246a4xwc3y278qyyvgx02n7kgnwznzg6wvh05s"; depends=[limma locfit matrixStats]; };
+  XBSeq = derive2 { name="XBSeq"; version="1.13.1"; sha256="1dkwk181glpqq3g6ks5mpx39p106a8vkhky40hh7zny1pdycbzzh"; depends=[Biobase DESeq2 dplyr ggplot2 locfit magrittr matrixStats pracma roar]; };
+  XDE = derive2 { name="XDE"; version="2.27.1"; sha256="1kj5wdn3w49zzi43hp8qs17v173nlgf215hm5pjy6l6pgvjjffjm"; depends=[Biobase BiocGenerics genefilter GeneMeta gtools MergeMaid mvtnorm RColorBrewer siggenes]; };
+  XINA = derive2 { name="XINA"; version="0.99.13"; sha256="1vyawdy8z1lisnpfdy6rxmkbjxzs9dzb5f8i6wqiyx726z68fcpc"; depends=[alluvial Biobase ggplot2 gridExtra igraph mclust plyr STRINGdb]; };
+  XVector = derive2 { name="XVector"; version="0.21.4"; sha256="1zb01pi6dm424ky95sli7h0a2qy2px6as0bz9ic48b3nwd7az2mn"; depends=[BiocGenerics IRanges S4Vectors zlibbioc]; };
   YAPSA = derive2 { name="YAPSA"; version="1.7.0"; sha256="1ny51v4papa067aylq7njyi2f17yp44y955szpark0lj0p759vjb"; depends=[circlize ComplexHeatmap corrplot dendextend GenomeInfoDb GenomicRanges GetoptLong ggplot2 gridExtra gtrellis KEGGREST lsei PMCMR reshape2 SomaticSignatures VariantAnnotation]; };
   a4 = derive2 { name="a4"; version="1.29.0"; sha256="0anj0gkbiccvb93xqzi7k1xxw2kqlwcf82pf4pqadc2fvmb1yfd7"; depends=[a4Base a4Classif a4Core a4Preproc a4Reporting]; };
   a4Base = derive2 { name="a4Base"; version="1.29.0"; sha256="03lnbfg94xwrib8g40y4bazp122zy9nnpv4v1m18wjc10hi7z7qp"; depends=[a4Core a4Preproc annaffy AnnotationDbi Biobase genefilter glmnet gplots limma mpm multtest]; };
@@ -784,106 +839,117 @@ in with self; {
   a4Preproc = derive2 { name="a4Preproc"; version="1.29.0"; sha256="1yhdsx23rd1mihj18jwvb7rl6kgyvbh4a75lsv0faqvsh9bk2k77"; depends=[AnnotationDbi]; };
   a4Reporting = derive2 { name="a4Reporting"; version="1.29.0"; sha256="1m79clrlf0f5f108vyamy2ia8sbxi3mm2kf8ckhbbsr6qgmnqcsb"; depends=[annaffy xtable]; };
   aCGH = derive2 { name="aCGH"; version="1.59.0"; sha256="17nqy2sgkvjzhm3l8ypg93i7yzsniy536b2wz7rd6km52spldp7r"; depends=[Biobase cluster multtest survival]; };
+  abseqR = derive2 { name="abseqR"; version="0.99.11"; sha256="1fzcchzxzpmiv2az8cg7nyx4pxkabfviyzm2nyx36kbyl4mfhwbb"; depends=[BiocParallel BiocStyle circlize flexdashboard ggcorrplot ggdendro ggplot2 gridExtra knitr plotly plyr png RColorBrewer reshape2 rmarkdown stringr vegan VennDiagram]; };
   acde = derive2 { name="acde"; version="1.11.0"; sha256="18551wkanalxk32g37j2yg766qgddsxid0lzv2rb61gqjb7qrmpa"; depends=[boot]; };
   adSplit = derive2 { name="adSplit"; version="1.51.0"; sha256="1azczbx6w17a1awwpfc1bbgx14562mr41mgii7skm9r8jb9pxn4n"; depends=[AnnotationDbi Biobase cluster GO_db KEGG_db multtest]; };
-  adaptest = derive2 { name="adaptest"; version="1.1.0"; sha256="0ddrkkh8mh3fq65dz6rrxm9wykyalwa90jf5vb0kllgjd3n6hvk8"; depends=[calibrate origami SummarizedExperiment tmle]; };
-  affxparser = derive2 { name="affxparser"; version="1.53.0"; sha256="1n81df9451r3pixakgjwi4zqna7gp0s9v6qrjpyw71294swi169f"; depends=[]; };
-  affy = derive2 { name="affy"; version="1.59.0"; sha256="1z57jn6l79jwks0j64m63s5h4kxdxg08qjmi646765xlf3xi746j"; depends=[affyio Biobase BiocGenerics BiocInstaller preprocessCore zlibbioc]; };
+  adaptest = derive2 { name="adaptest"; version="1.1.1"; sha256="02dlhbnfl11x8hpampzz2d76i958k6lm4d3yc4kicpdsl5vmv6mk"; depends=[calibrate origami SummarizedExperiment tmle]; };
+  affxparser = derive2 { name="affxparser"; version="1.53.2"; sha256="15i7rnwhc602y2c2i0h07z7fw29ynjq0jw1hqsjinw5df4afnxj7"; depends=[]; };
+  affy = derive2 { name="affy"; version="1.59.1"; sha256="08fppshnnj1rxjd0kkmlrsz9nhqllzbzha5r1jbcly1f3dgy0799"; depends=[affyio Biobase BiocGenerics BiocManager preprocessCore zlibbioc]; };
   affyContam = derive2 { name="affyContam"; version="1.39.0"; sha256="1mh1yqrdh47ggqibgghnlmjfq46n0w4q1hdji7cv1js6kry7wqcf"; depends=[affy affydata Biobase]; };
   affyILM = derive2 { name="affyILM"; version="1.33.0"; sha256="0q41aznln8kngmv0q6036zvzbbk5sw46lhmss3npk7r6q0ryyvwr"; depends=[affxparser affy Biobase gcrma]; };
   affyPLM = derive2 { name="affyPLM"; version="1.57.0"; sha256="17vy0knf0vb3l824q2ib4hp0izw4s8phbjalsrzbwvmm7gg25xv7"; depends=[affy Biobase BiocGenerics gcrma preprocessCore zlibbioc]; };
   affyPara = derive2 { name="affyPara"; version="1.41.0"; sha256="1j81wl9ivx24jag4jnnv6viblpqba72c72nmcxs60cdqq44vs87h"; depends=[affy affyio aplpack snow vsn]; };
   affyQCReport = derive2 { name="affyQCReport"; version="1.59.0"; sha256="16sz9rii38vph2qiplab0f7fakd2vl77df543mfiykk3w5f0why2"; depends=[affy affyPLM Biobase genefilter lattice RColorBrewer simpleaffy xtable]; };
   affycomp = derive2 { name="affycomp"; version="1.57.0"; sha256="167bgzq82zsl2mdgzai95msh188j10hwrmp4bqab5qh9h2s8phvb"; depends=[Biobase]; };
-  affycoretools = derive2 { name="affycoretools"; version="1.53.2"; sha256="10zr09sqg6yf5f22qy0157qp03c479lxcdlippxawsq3x5dag533"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; };
+  affycoretools = derive2 { name="affycoretools"; version="1.53.4"; sha256="13vacl5a4rnizn6pgchyd8xxpf3sd4cdwxfyvmslwaci4dh0mlk5"; depends=[affy AnnotationDbi Biobase BiocGenerics DBI edgeR gcrma ggplot2 GOstats gplots hwriter lattice limma oligoClasses ReportingTools RSQLite S4Vectors xtable]; };
   affyio = derive2 { name="affyio"; version="1.51.0"; sha256="1p10bycid4dlhxhllalffywrc06xj1qjzs9f9fvj1y1yzj3xgmqz"; depends=[zlibbioc]; };
-  affylmGUI = derive2 { name="affylmGUI"; version="1.55.2"; sha256="0i0psf8rp2ars1ibb13vchmgapb8mf1smmabgb54c8gmd3lzx6js"; depends=[affy affyio affyPLM BiocGenerics BiocInstaller gcrma limma R2HTML tkrplot xtable]; };
+  affylmGUI = derive2 { name="affylmGUI"; version="1.55.3"; sha256="0x6f92w8gqk2vs2p3walg2f0z0vx0gkiyz1jpnq01lz9zklwvhq9"; depends=[affy affyio affyPLM BiocGenerics BiocManager gcrma limma R2HTML tkrplot xtable]; };
   affypdnn = derive2 { name="affypdnn"; version="1.55.0"; sha256="11gwlr0ghw5c0977sgyhvghb953cgppp3vz3g1gfd3mdgkckvpqw"; depends=[affy]; };
   agilp = derive2 { name="agilp"; version="3.13.0"; sha256="1z7bxkdmqpz4kn1m2z91knnp36mp7z5awzj6qqwj7xwydc85m8np"; depends=[]; };
   alpine = derive2 { name="alpine"; version="1.7.0"; sha256="0d5r1izkx7lvl9f7sy0sy97mpvxaj05010vxmgw0c5yfpzzi3hz1"; depends=[Biostrings GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph IRanges RBGL Rsamtools S4Vectors speedglm stringr SummarizedExperiment]; };
   alsace = derive2 { name="alsace"; version="1.17.0"; sha256="0p17f29n1z3n4x2rpv4hja10aq5349653ra4hwl5fbli3fa0ww43"; depends=[ALS ptw]; };
   altcdfenvs = derive2 { name="altcdfenvs"; version="2.43.0"; sha256="1md8rb732bpsxs1r1mgvd9f98ixg596rn28pw6pq8bl8hj5jh3l9"; depends=[affy Biobase BiocGenerics Biostrings hypergraph makecdfenv S4Vectors]; };
-  ampliQueso = derive2 { name="ampliQueso"; version="1.19.0"; sha256="0nvwvvrm41vi289zp86s4yb0b6z9i54gq43vmvk1jh556rg1wsh6"; depends=[DESeq doParallel edgeR foreach genefilter ggplot2 gplots knitr rgl rnaSeqMap samr statmod VariantAnnotation xtable]; };
-  amplican = derive2 { name="amplican"; version="1.3.1"; sha256="16h9py6yl6nb2203wk00g0lvgkic4f9xdwzrxdq9rk1mlnmjbyd2"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggforce ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats rmarkdown S4Vectors ShortRead stringr waffle]; };
-  anamiR = derive2 { name="anamiR"; version="1.9.0"; sha256="07xldx4dqc3s5vrankh1swg8a4hy50ihiw5wx5ndxvkpig8sspr8"; depends=[agricolae DBI DESeq2 gage gplots limma lumi RMySQL S4Vectors SummarizedExperiment]; };
+  ampliQueso = derive2 { name="ampliQueso"; version="1.19.4"; sha256="0nznv4cdjxr1lcr4cf2jpipcqn9s90kd97rqnv5kild2yv8srbhq"; depends=[DESeq doParallel edgeR foreach genefilter ggplot2 gplots knitr rgl rnaSeqMap samr statmod VariantAnnotation xtable]; };
+  amplican = derive2 { name="amplican"; version="1.3.5"; sha256="0yf9wjgg22ry89cs9in66gwfana8c9cqaq7anfkpa3ng27llakd7"; depends=[BiocGenerics BiocParallel Biostrings clusterCrit data_table dplyr GenomeInfoDb GenomicRanges ggforce ggplot2 ggthemes gridExtra gtable IRanges knitr Matrix matrixStats rmarkdown S4Vectors ShortRead stringr waffle]; };
+  anamiR = derive2 { name="anamiR"; version="1.9.2"; sha256="0l0lgan8zs04dyk972prvdng4xb8rig5g9rv55z1pplxvla4grqk"; depends=[agricolae DBI DESeq2 gage gplots limma lumi RMySQL S4Vectors SummarizedExperiment]; };
   annaffy = derive2 { name="annaffy"; version="1.53.0"; sha256="0z97liznk6by9a7klw0wirpchd9n57ycsf80xsprnlgy60slypvc"; depends=[AnnotationDbi Biobase DBI GO_db KEGG_db]; };
   annmap = derive2 { name="annmap"; version="1.23.0"; sha256="0m74p8zrqhyfgpbqf4s98174y7gz9p1nh9q272xbsqn8ckdk8c0a"; depends=[Biobase BiocGenerics DBI digest genefilter GenomicRanges IRanges lattice RMySQL Rsamtools]; };
-  annotate = derive2 { name="annotate"; version="1.59.0"; sha256="0m384l8asvl2kswaar408w08yps7n822pfsxqby8igblrfzjgxjq"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl XML xtable]; };
+  annotate = derive2 { name="annotate"; version="1.59.1"; sha256="016sgwqd0s3jhpqw4056y0xa7p1jc99i8b7biq754vzzbapjvyb0"; depends=[AnnotationDbi Biobase BiocGenerics DBI RCurl XML xtable]; };
   annotationTools = derive2 { name="annotationTools"; version="1.55.0"; sha256="18rxyi7sx93l52agbxnla1b7gn2bk3fpby0qj224nqinydjxkmjj"; depends=[Biobase]; };
-  annotatr = derive2 { name="annotatr"; version="1.7.1"; sha256="0ccad82zrdy028dyycsvbcdijh2xl1ibjqz36wfnnnipxwc9fq89"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; };
+  annotatr = derive2 { name="annotatr"; version="1.7.2"; sha256="0q18fmb7wbbhqm3rwgf3d3cm9rpryrybv35jglsjsa3ca7y0550d"; depends=[AnnotationDbi AnnotationHub dplyr GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges readr regioneR reshape2 rtracklayer S4Vectors]; };
   anota = derive2 { name="anota"; version="1.29.0"; sha256="1najgyj4qn9954jxbq0c4psarsq8mrg6fz0w3p9vmcm68l8lz3ig"; depends=[multtest qvalue]; };
-  anota2seq = derive2 { name="anota2seq"; version="1.3.0"; sha256="0kr5wm6sirkycp0f017vqialqzzjadyfkm2fpv2zj6v8acnv3704"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; };
+  anota2seq = derive2 { name="anota2seq"; version="1.3.1"; sha256="1gp5f852kiz1ck19iasvkm1idgdcv636jdkmfp4j76r7k3vjzk36"; depends=[DESeq2 edgeR limma multtest qvalue RColorBrewer SummarizedExperiment]; };
   antiProfiles = derive2 { name="antiProfiles"; version="1.21.0"; sha256="166mx0y4b3j1vd3daxr9wd48d007qh1sj1vjssjfails6j4sy9lh"; depends=[locfit matrixStats]; };
   apComplex = derive2 { name="apComplex"; version="2.47.0"; sha256="0pqgrzfvljvinsalki5sc31c38k959g5gzag7sn33iilqw7s8grx"; depends=[graph org_Sc_sgd_db RBGL Rgraphviz]; };
-  apeglm = derive2 { name="apeglm"; version="1.3.0"; sha256="1y9g9s68fqiinr2lwx10s5m533ccgbpzh4wqlf7nbjw696vshjnb"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; };
+  apeglm = derive2 { name="apeglm"; version="1.3.2"; sha256="1w7g7vfzqs109b2bihw7vgsyxrc65j31zlxf4v9bn5y144hzrn2j"; depends=[emdbook GenomicRanges Rcpp RcppEigen RcppNumerical SummarizedExperiment]; };
+  appreci8R = derive2 { name="appreci8R"; version="0.99.5"; sha256="0jr8qfrxdigddw1nwlzgqs7whzvs5h1c8xzmlzrbwrzn3ymgka54"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 COSMIC_67 DT GenomicFeatures GenomicRanges GenomicScores Homo_sapiens IRanges MafDb_1Kgenomes_phase3_hs37d5 MafDb_ESP6500SI_V2_SSA137_hs37d5 MafDb_ExAC_r1_0_hs37d5 MafDb_gnomADex_r2_0_1_hs37d5 openxlsx PolyPhen_Hsapiens_dbSNP131 rentrez Rsamtools rsnps S4Vectors seqinr shiny shinyjs SIFT_Hsapiens_dbSNP137 SNPlocs_Hsapiens_dbSNP144_GRCh37 stringr SummarizedExperiment TxDb_Hsapiens_UCSC_hg19_knownGene VariantAnnotation XtraSNPlocs_Hsapiens_dbSNP144_GRCh37]; };
+  aroma_light = derive2 { name="aroma.light"; version="3.11.2"; sha256="0m03zkil79axvrmvaaimlv5pas6h19ylc4l5pm7f2xnc5150n8vp"; depends=[matrixStats R_methodsS3 R_oo R_utils]; };
   arrayMvout = derive2 { name="arrayMvout"; version="1.39.0"; sha256="1yrqx8vkbhwsdh0x3ig5wmy3ynx56154wgc69hzssvw38jdlp9vy"; depends=[affy affyContam Biobase lumi mdqc parody simpleaffy]; };
   arrayQuality = derive2 { name="arrayQuality"; version="1.59.0"; sha256="1nhavhn4vnxvmj2hw8qlrnbyp3nsv3m90qcj20ijiv85jkr10mpa"; depends=[gridBase hexbin limma marray RColorBrewer]; };
-  arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.37.0"; sha256="0bd78q63gsnh0bfspif6zgkp77wf634xcq6h53ka96qs7d98nxcv"; depends=[affy affyPLM beadarray Biobase Cairo genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG vsn XML]; };
+  arrayQualityMetrics = derive2 { name="arrayQualityMetrics"; version="3.37.1"; sha256="1pn3q37dmx2drqiq9k1y0s9n9hmh5njp70ljgkf4z83a3wwgz6fk"; depends=[affy affyPLM beadarray Biobase Cairo genefilter gridSVG Hmisc hwriter lattice latticeExtra limma RColorBrewer setRNG vsn XML]; };
+  artMS = derive2 { name="artMS"; version="0.99.101"; sha256="0id199zy5cmbjap8zwp2if5hnr20cbsk9fsvfvkvg29pa01bi3x0"; depends=[AnnotationDbi biomaRt bit64 circlize cluster ComplexHeatmap corrplot data_table dplyr factoextra FactoMineR getopt ggdendro ggplot2 ggrepel gplots gProfileR limma MSstats openxlsx org_Hs_eg_db org_Mm_eg_db PerformanceAnalytics pheatmap plotly plyr RColorBrewer reshape2 seqinr stringr tidyr UpSetR VennDiagram yaml]; };
   attract = derive2 { name="attract"; version="1.33.2"; sha256="15mrqxcqflm3f77s336dyh8q57ipr27ca81aap6pwfxgpqykay49"; depends=[AnnotationDbi Biobase cluster GOstats KEGGREST limma org_Hs_eg_db reactome_db]; };
   bacon = derive2 { name="bacon"; version="1.9.0"; sha256="018082c3g5cdi3i1z1q26cq4v1f529d1c2q92p6qyzblcs8m2j2m"; depends=[BiocParallel ellipse ggplot2]; };
-  ballgown = derive2 { name="ballgown"; version="2.13.0"; sha256="16x4bh9wdqw5isia1vwi8kynlfaxvvc808lnbdkz8964rfxn317i"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; };
-  bamsignals = derive2 { name="bamsignals"; version="1.13.1"; sha256="1jyf9arivqk42zsj9k3fgjvz7d8ixlm2irsac4vkfjvr8nrfssyr"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; };
-  banocc = derive2 { name="banocc"; version="1.5.0"; sha256="1i86y34yhcaadl7ans6ypcr5yprqlnl4fl0bmr1k28pd8knwgq70"; depends=[coda mvtnorm rstan stringr]; };
+  ballgown = derive2 { name="ballgown"; version="2.13.1"; sha256="16464any97gpy6jmg61w58cryfd4z0c7qrq29vb28pbfxiwv4mmz"; depends=[Biobase GenomeInfoDb GenomicRanges IRanges limma RColorBrewer rtracklayer S4Vectors sva]; };
+  bamsignals = derive2 { name="bamsignals"; version="1.13.2"; sha256="1w8jqk8iz63cfhnbnf2r4k15052kp2cyq6da9zl4my9kc237nr14"; depends=[BiocGenerics GenomicRanges IRanges Rcpp Rhtslib zlibbioc]; };
+  banocc = derive2 { name="banocc"; version="1.5.2"; sha256="1sdj9gd43a7pz8sbzm0l9d7ifsmdpgksq6f52zs06blsy31aca99"; depends=[coda mvtnorm rstan stringr]; };
   basecallQC = derive2 { name="basecallQC"; version="1.5.0"; sha256="1g6hisqbg41kwz16iw7ai2rbw6hvndv560m7jxa85cm3kl9s5dxh"; depends=[data_table dplyr DT ggplot2 knitr lazyeval magrittr prettydoc raster rmarkdown ShortRead stringr tidyr XML yaml]; };
+  bayNorm = derive2 { name="bayNorm"; version="0.99.19"; sha256="1vk4rlc9vchlvidhykqb75ljxhy0v9pbm2jdd5md4dswwq74psad"; depends=[BB BiocParallel doSNOW fitdistrplus foreach iterators locfit MASS Rcpp RcppArmadillo RcppProgress SingleCellExperiment SummarizedExperiment]; };
   baySeq = derive2 { name="baySeq"; version="2.15.2"; sha256="01iv53gsrqm0ia44dzirdfpfqdrav46xxwml7xmb6cfgafx118qd"; depends=[abind edgeR GenomicRanges]; };
-  bcSeq = derive2 { name="bcSeq"; version="1.3.0"; sha256="1l1zpf1pyf7r3qqif6f4fjzxrvcj18yz8ggads1q98z74nrzwgwq"; depends=[Biostrings Matrix Rcpp]; };
-  beachmat = derive2 { name="beachmat"; version="1.3.2"; sha256="0mr1a8zcrrfs2klavq4jzw5lpcv64l3rvjpqx78jdhdvrfd0fi99"; depends=[DelayedArray HDF5Array Rcpp rhdf5 Rhdf5lib]; };
-  beadarray = derive2 { name="beadarray"; version="2.31.0"; sha256="1kf6fzq11mr49xav1ivz366vpsjaqhi1l0k4751k79s6rr30m6d6"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; };
+  bcSeq = derive2 { name="bcSeq"; version="1.3.3"; sha256="14lmv9zlrh1xqdm0d0xyfi2rbjk8h3hkiaq74mbrygcgy8i9n77b"; depends=[Biostrings Matrix Rcpp]; };
+  beachmat = derive2 { name="beachmat"; version="1.3.11"; sha256="06nb379rwpfb216qizxmmviljnm92vw52q9qlba8hsgrn189fbzl"; depends=[BiocGenerics DelayedArray HDF5Array Rcpp rhdf5 Rhdf5lib]; };
+  beadarray = derive2 { name="beadarray"; version="2.31.1"; sha256="1vnhdw4gcv35xbj6s2rhwf4w90ghpmyjqcp5r4hnh3f829921xvf"; depends=[AnnotationDbi BeadDataPackR Biobase BiocGenerics GenomicRanges ggplot2 illuminaio IRanges limma reshape2]; };
   beadarraySNP = derive2 { name="beadarraySNP"; version="1.47.0"; sha256="1x4byqw6d2xy4db6pgbadsdwakw39lvw58dckijk2fwgrimzipn0"; depends=[Biobase quantsmooth]; };
   bgafun = derive2 { name="bgafun"; version="1.43.0"; sha256="02pv0b72m7xy2hqjdhz881qkp83api8lwbjngq7v29xhp7mpmgq3"; depends=[ade4 made4 seqinr]; };
   bgx = derive2 { name="bgx"; version="1.47.0"; sha256="1vh2hhjsfyx8laq1xym7zaxsakgwcp0ybha6xxdc18mwlwr3q412"; depends=[affy Biobase gcrma]; };
-  bigmelon = derive2 { name="bigmelon"; version="1.7.0"; sha256="0r753dyi2ls6dy99zh519mvqqc9pr8vy16pyvmpmpvxg8bj1hx90"; depends=[Biobase BiocGenerics gdsfmt GEOquery methylumi minfi wateRmelon]; };
+  bigmelon = derive2 { name="bigmelon"; version="1.7.4"; sha256="10sypnsvj561v9fdii047xvy2hamljss3rdw89b5l478flh5h3bx"; depends=[Biobase BiocGenerics gdsfmt GEOquery methylumi minfi wateRmelon]; };
   bigmemoryExtras = derive2 { name="bigmemoryExtras"; version="1.29.0"; sha256="0cxbd4zdvrpqycnvgw7svvngknscc4s9ycqp3csa8v1gpc9bj9cd"; depends=[bigmemory]; };
-  bioCancer = derive2 { name="bioCancer"; version="1.9.0"; sha256="131a7la949ckklcbsr9rbm99nhaz7zlbk6ck7lhc8n55z5lig30d"; depends=[AlgDesign AnnotationFuncs Biobase cgdsr clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier htmlwidgets org_Hs_eg_db plyr r_import radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; };
+  bioCancer = derive2 { name="bioCancer"; version="1.9.8"; sha256="0dzsa1v2w8x73vz41h1h7gfv6yk1csffmn453cpzvvy2sy6v7pls"; depends=[AlgDesign AnnotationFuncs Biobase cgdsr clusterProfiler DiagrammeR DOSE dplyr DT geNetClassifier htmlwidgets org_Hs_eg_db plyr r_import radiant_data reactome_db ReactomePA shiny shinythemes tibble visNetwork XML]; };
   bioDist = derive2 { name="bioDist"; version="1.53.0"; sha256="04pazvkmw36ghicyzbqvb7rq3kvpw7qrj01k7gddrg4c1dc2rdd2"; depends=[Biobase KernSmooth]; };
-  bioassayR = derive2 { name="bioassayR"; version="1.19.0"; sha256="1c2xjbh0lnik1dn2iwicpd0y1swbnnz1zac1vlaabhmxdw2g1h0n"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; };
-  biobroom = derive2 { name="biobroom"; version="1.13.0"; sha256="1csxi4f7d0lg1j9sjnmp089pma65pq1k2yyimrh0vl8yw92zlns6"; depends=[Biobase broom dplyr tidyr]; };
+  bioassayR = derive2 { name="bioassayR"; version="1.19.3"; sha256="1p7akwrsa22qrngsyksin8xxldfmlfp63yypgsqackj1qni1p4gs"; depends=[BiocGenerics ChemmineR DBI Matrix rjson RSQLite XML]; };
+  biobroom = derive2 { name="biobroom"; version="1.13.2"; sha256="02mgb1rqdn616xgs1gjfmn84z6565v41m9zg16m6waba8p348chn"; depends=[Biobase broom dplyr tidyr]; };
   biocGraph = derive2 { name="biocGraph"; version="1.43.0"; sha256="1ps4r6rkffmqisfz5wip981r3dbx57n3r1j6whw9l6dbs043fjql"; depends=[BiocGenerics geneplotter graph Rgraphviz]; };
-  biocViews = derive2 { name="biocViews"; version="1.49.4"; sha256="1mgf21zbq8pm3iw8fsw700wzdjca1kf575xayaibblfsxcd1y59q"; depends=[Biobase graph RBGL RCurl RUnit XML]; };
-  biomaRt = derive2 { name="biomaRt"; version="2.37.3"; sha256="087vd0csab9ph21ijahjj66wpwnbsd48mvym12y7wrw71rvincw2"; depends=[AnnotationDbi httr progress RCurl stringr XML]; };
-  biomformat = derive2 { name="biomformat"; version="1.9.0"; sha256="1n8dwxkd6k0nvksg6dpcq84da9y9mjsmbn62362ja2kjgzqkh80x"; depends=[jsonlite Matrix plyr rhdf5]; };
+  biocViews = derive2 { name="biocViews"; version="1.49.10"; sha256="1dzd4ag0m2cprih66787aqgmm6fn68w6r7l5x6palsgix382m4m2"; depends=[Biobase graph RBGL RCurl RUnit XML]; };
+  biomaRt = derive2 { name="biomaRt"; version="2.37.9"; sha256="196glcsp4cp0wfw2hrlvpxrx9r7ncfd775gfpmy298xldsxqf319"; depends=[AnnotationDbi httr progress RCurl stringr XML]; };
+  biomformat = derive2 { name="biomformat"; version="1.9.1"; sha256="1kjk6agznq63a48jhj2yxkxr1nmwjlhb4zwmh1i1aawhzk1d04z1"; depends=[jsonlite Matrix plyr rhdf5]; };
   biomvRCNS = derive2 { name="biomvRCNS"; version="1.21.0"; sha256="193cfwknlm28pm5n7ydmrnaczw7xisiz07l29jyk0h05jrmrvna0"; depends=[GenomicRanges Gviz IRanges mvtnorm]; };
   biosigner = derive2 { name="biosigner"; version="1.9.0"; sha256="0v33vksq23byv5ybkb0mmvcb5fag3ghy9gcvb9aj16i7r0bs61ql"; depends=[Biobase e1071 randomForest ropls]; };
   biosvd = derive2 { name="biosvd"; version="2.17.0"; sha256="19l7mc1pbsbbzsb635iiqb778xq1lrlnmsnyd324471c3rnb1yn7"; depends=[Biobase BiocGenerics NMF]; };
   biotmle = derive2 { name="biotmle"; version="1.5.1"; sha256="0ihc1g60j1lkz3na23vvpd9c8xcz0p8wm5ksa6169zxjgqb90mmv"; depends=[BiocGenerics BiocParallel doFuture dplyr future ggplot2 ggsci limma S4Vectors SummarizedExperiment superheat tmle]; };
-  biovizBase = derive2 { name="biovizBase"; version="1.29.0"; sha256="0cmfigqy4ajrsdgwiwnwkhnznk14phq2di7yijjr0n3whk2xbvp4"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; };
+  biovizBase = derive2 { name="biovizBase"; version="1.29.2"; sha256="0xhwnjjwv41wsn3knl3pyswdwnrmsj49nwrxpmdlmivgqz6f0kz7"; depends=[AnnotationDbi AnnotationFilter BiocGenerics Biostrings dichromat ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges Hmisc IRanges RColorBrewer rlang Rsamtools S4Vectors scales SummarizedExperiment VariantAnnotation]; };
   birta = derive2 { name="birta"; version="1.25.0"; sha256="0c8rvf63cq6rzax2vhgk4y2xjgylnygihgv8yw7iznhpvqxxqm5g"; depends=[Biobase limma MASS]; };
   birte = derive2 { name="birte"; version="1.17.0"; sha256="14xgvv12457yai92vvbpnc2fn4bnc129nrpwxl4kck09mh7kzfii"; depends=[Biobase glmnet limma MASS nem Rcpp RcppArmadillo]; };
-  blima = derive2 { name="blima"; version="1.15.0"; sha256="160vdrinkq6pw851sxc9k0ybhh1ms0zd3jnxri6gdysbk2c2da2n"; depends=[beadarray Biobase BiocGenerics Rcpp]; };
+  blima = derive2 { name="blima"; version="1.15.1"; sha256="06j3ibg62kxv0qvn1rmals6y6g1h8a3y1icvypjanl2r96l3h8hv"; depends=[beadarray Biobase BiocGenerics Rcpp]; };
   bnbc = derive2 { name="bnbc"; version="1.3.0"; sha256="07jzc55x31zn5ak5rlpc0xpqgnkl03vhpdrd8ay12n450zggd77q"; depends=[BiocGenerics EBImage GenomeInfoDb GenomicRanges IRanges matrixStats preprocessCore Rcpp S4Vectors SummarizedExperiment sva]; };
+  brainImageR = derive2 { name="brainImageR"; version="0.99.13"; sha256="0yfp5z27iawr9m1avmlk6fwyxfzh030j6a6amz50zssmxx3girld"; depends=[BiocGenerics ExperimentHub ggplot2 gridExtra randomForest RColorBrewer testthat]; };
   branchpointer = derive2 { name="branchpointer"; version="1.7.0"; sha256="0ii7y3as43g7yp2qbzxv0bz66ayng8pxgk95303fp2l2akjb7gnx"; depends=[biomaRt Biostrings BSgenome_Hsapiens_UCSC_hg38 caret cowplot data_table gbm GenomeInfoDb GenomicRanges ggplot2 IRanges kernlab plyr rtracklayer S4Vectors stringr]; };
+  breakpointR = derive2 { name="breakpointR"; version="0.99.11"; sha256="1d6s3zvr0sjif63czd8z0d67ysdvjyfcqfcvcjzwcv158h59h7vj"; depends=[BiocGenerics breakpointRdata cowplot doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gtools IRanges Rsamtools S4Vectors]; };
   bridge = derive2 { name="bridge"; version="1.45.0"; sha256="11rqvigax6j1bqj1nyf4x6ssmqi0892m1rhak1wz3xcj4adb8vwz"; depends=[rama]; };
-  bsseq = derive2 { name="bsseq"; version="1.17.0"; sha256="0mx9x996lhq63la9wkmygvdk8s215j3j833vx738prncc5wkkl4v"; depends=[Biobase BiocGenerics data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils S4Vectors scales SummarizedExperiment]; };
+  bsseq = derive2 { name="bsseq"; version="1.17.7"; sha256="1ch766hhahn70nsi2a0r6438q5b3b3z1a7l65ldbhr8c3w4x1wp3"; depends=[beachmat Biobase BiocGenerics BiocParallel Biostrings BSgenome data_table DelayedArray DelayedMatrixStats GenomeInfoDb GenomicRanges gtools HDF5Array IRanges limma locfit permute R_utils Rcpp Rhdf5lib S4Vectors scales SummarizedExperiment]; };
   bumphunter = derive2 { name="bumphunter"; version="1.23.0"; sha256="1dn6z7q8k54vd59dqirvdy6048ywa3c4njc2vrja8f5i2lsvfwc8"; depends=[AnnotationDbi BiocGenerics doRNG foreach GenomeInfoDb GenomicFeatures GenomicRanges IRanges iterators limma locfit matrixStats S4Vectors]; };
+  cTRAP = derive2 { name="cTRAP"; version="0.99.12"; sha256="0wg8phma29ijgfwp992l3dcqb64q7fzvamsiphrr3swn5dzs8kbv"; depends=[biomaRt cowplot data_table fgsea ggplot2 httr limma pbapply piano plyr R_utils readr rhdf5]; };
   caOmicsV = derive2 { name="caOmicsV"; version="1.11.0"; sha256="0lxlk5wlfna009k2jk8kgj61ks3hfcx1lvpymidb2yjx0kk2n7sg"; depends=[bc3net igraph]; };
-  canceR = derive2 { name="canceR"; version="1.15.0"; sha256="08iz3lih2rhnwd31pfq6ra6kwwgmmggrfrcqsivnp49ni19gy0sq"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; };
+  canceR = derive2 { name="canceR"; version="1.15.3"; sha256="03ib2ydmb26zc91hwy5w2sysvqay1087yjs03ki83spr4hh4hqmx"; depends=[Biobase cgdsr circlize Formula geNetClassifier GSEABase GSEAlm phenoTest plyr rpart RUnit survival tcltk2 tkrplot]; };
   cancerclass = derive2 { name="cancerclass"; version="1.25.0"; sha256="059nw8y6319m8k3i4l4crbydia2xz8v3dzc1dgj0hz6v3gfkxh8v"; depends=[binom Biobase]; };
   casper = derive2 { name="casper"; version="2.15.0"; sha256="129grx8bb2scjsvcqgyxigsw1n36miqbpf8val5yzm0lv9zwv24s"; depends=[Biobase BiocGenerics coda EBarrays gaga GenomeInfoDb GenomicFeatures GenomicRanges gtools IRanges limma mgcv Rsamtools rtracklayer S4Vectors sqldf survival VGAM]; };
-  categoryCompare = derive2 { name="categoryCompare"; version="1.25.0"; sha256="16zmqs8mf8lhsnlqfna40bq46v2zgqn823y98ycnx4c1m1l2jmk3"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; };
-  cbaf = derive2 { name="cbaf"; version="1.3.0"; sha256="19zy92jk8g5dzh5r2hpdc96yjgh0plqzn189giww65sq6hgiqvl2"; depends=[BiocFileCache cgdsr genefilter gplots RColorBrewer xlsx]; };
-  ccfindR = derive2 { name="ccfindR"; version="1.1.1"; sha256="1xp960q6jcskganvygxkpr9may680s30p57fjm5x625z4vwvd8r8"; depends=[ape BiocGenerics gtools Matrix RColorBrewer Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; };
+  categoryCompare = derive2 { name="categoryCompare"; version="1.25.1"; sha256="1qxfkqzyq6q4imhi517bbxn785i0qzwcy4ac68k1iw0c8frcn1hg"; depends=[annotate AnnotationDbi Biobase BiocGenerics Category colorspace GOstats graph GSEABase hwriter RCy3]; };
+  cbaf = derive2 { name="cbaf"; version="1.3.5"; sha256="08gr3axl77gyall3hd97gf5npqz588p24aafqf4p31djqxmv64wn"; depends=[BiocFileCache cgdsr genefilter gplots RColorBrewer xlsx]; };
+  ccfindR = derive2 { name="ccfindR"; version="1.1.23"; sha256="14gl5jmjp23q0kh9wrv5ds5l0qly9x07h4ny1ivm3sqqlbs8ya9h"; depends=[ape gtools irlba Matrix RColorBrewer Rcpp RcppEigen Rmpi Rtsne S4Vectors SingleCellExperiment SummarizedExperiment]; };
+  ccmap = derive2 { name="ccmap"; version="1.7.2"; sha256="1f0b24c0is8nxkfxxjnbdbmqv4p9ifcsdw49skkwnsc5n9k6w54c"; depends=[AnnotationDbi BiocManager ccdata data_table doParallel foreach lsa xgboost]; };
   ccrepe = derive2 { name="ccrepe"; version="1.17.0"; sha256="1k464wrgigq0yyr2w7pw8qwkql49jnl58ayr26785ajdn79lfcq4"; depends=[infotheo]; };
+  celaref = derive2 { name="celaref"; version="0.99.3"; sha256="1nmdqadrj5hgqijjywk8754ajj4i59bmrpah9xdginpiakdbskra"; depends=[BiocGenerics dplyr ggplot2 magrittr MAST Matrix readr rlang S4Vectors SummarizedExperiment tibble]; };
   cellGrowth = derive2 { name="cellGrowth"; version="1.25.0"; sha256="12flwz3pzjhwqxsljy5g2ylgxiygln24z5zydc62xrkjcg3wqgn0"; depends=[lattice locfit]; };
-  cellHTS2 = derive2 { name="cellHTS2"; version="2.45.0"; sha256="1dbjsxhfifjpmyn3w3zhmhaf3s2arrpl6lipg31sp9w9xfiij1xs"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; };
-  cellTree = derive2 { name="cellTree"; version="1.11.0"; sha256="1rkrj316fm2xx1x7wjk9qv2kdr4vxhbixfw7y2r1p6kvxl1xwdi0"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; };
+  cellHTS2 = derive2 { name="cellHTS2"; version="2.45.1"; sha256="0ccl152v44380666xhqj5s1vwd9xqih3a7ysdjb5n8mwpq1kq0av"; depends=[Biobase BiocGenerics Category genefilter GSEABase hwriter locfit prada RColorBrewer splots vsn]; };
+  cellTree = derive2 { name="cellTree"; version="1.11.1"; sha256="026f59jj07j5jbv0j3048c44sz2zr50lzwy07m0i6yvl0w1pc57h"; depends=[gplots igraph maptpx slam topGO topicmodels xtable]; };
   cellbaseR = derive2 { name="cellbaseR"; version="1.5.0"; sha256="0067s59gq395ha4kjmdvqx3bdjgkgczwvchwjswr23hm6ffbgss3"; depends=[BiocParallel data_table doParallel foreach httr jsonlite pbapply R_utils Rsamtools tidyr]; };
-  cellity = derive2 { name="cellity"; version="1.9.0"; sha256="0rdknpw38cwf4vvq30g573irv4l51gyx9yaff8rkrd0b38bpywa8"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; };
-  cellscape = derive2 { name="cellscape"; version="1.5.0"; sha256="0was4lsw2rpg98kzdzpd6wv84jzfh7ncgnvsyc2ijbjanf52ycxd"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; };
+  cellity = derive2 { name="cellity"; version="1.9.2"; sha256="0hc8whsqq066drwbk3aiz8pdy7zd3qx7fmsa5knw0xk1dpbpglcg"; depends=[AnnotationDbi e1071 ggplot2 mvoutlier org_Hs_eg_db org_Mm_eg_db robustbase topGO]; };
+  cellscape = derive2 { name="cellscape"; version="1.5.1"; sha256="1fi9qxnhrh9n9br1gjpss8acpfd2fm22nd9ih2flng0hgy4aymyc"; depends=[dplyr gtools htmlwidgets jsonlite plyr reshape2 stringr]; };
   cghMCR = derive2 { name="cghMCR"; version="1.39.0"; sha256="119nk170b8a8lr1hi2nmj2bgaydkxf11732bqxhpm13hn9cyvnpr"; depends=[BiocGenerics CNTools DNAcopy limma]; };
   charm = derive2 { name="charm"; version="2.27.0"; sha256="0cgrh027qjy34nb0xd0fl7fxifpgb1i9qcy3g7w7vv0sgj5g2gxc"; depends=[Biobase Biostrings BSgenome ff fields genefilter gtools IRanges limma nor1mix oligo oligoClasses preprocessCore RColorBrewer siggenes SQN sva]; };
   chimera = derive2 { name="chimera"; version="1.23.0"; sha256="16l1y016wdmdqm4psnl3rxs4gw1d8b0hvfr29x9sv7153fpvqxhf"; depends=[AnnotationDbi Biobase BSgenome_Hsapiens_UCSC_hg19 GenomicAlignments GenomicRanges Homo_sapiens Rsamtools TxDb_Hsapiens_UCSC_hg19_knownGene]; };
-  chimeraviz = derive2 { name="chimeraviz"; version="1.7.0"; sha256="12xkgvmqfdwfzrxw6f3iqkbknqw3238ks5903jk314wc1sz1pxxc"; depends=[AnnotationDbi AnnotationFilter ArgumentCheck BiocStyle Biostrings dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph Gviz IRanges org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer readr Rgraphviz rmarkdown Rsamtools S4Vectors]; };
+  chimeraviz = derive2 { name="chimeraviz"; version="1.7.5"; sha256="0k0yn24v3lgkzwbx1597n5k81igjmvmz232mwfsazd3znwdbwm7b"; depends=[AnnotationDbi AnnotationFilter ArgumentCheck BiocStyle Biostrings data_table dplyr DT ensembldb GenomeInfoDb GenomicAlignments GenomicRanges graph Gviz IRanges org_Hs_eg_db org_Mm_eg_db plyr RCircos RColorBrewer Rgraphviz rmarkdown Rsamtools S4Vectors]; };
   chipenrich = derive2 { name="chipenrich"; version="2.5.0"; sha256="1ssvmnnlf6s37hbj0cdpcjyfz3qj7mv1nfxbdsb3cbq541lxidlv"; depends=[AnnotationDbi BiocGenerics chipenrich_data GenomeInfoDb GenomicRanges IRanges lattice latticeExtra mgcv org_Dm_eg_db org_Dr_eg_db org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db plyr rms rtracklayer S4Vectors stringr]; };
   chipseq = derive2 { name="chipseq"; version="1.31.0"; sha256="0pfi2jyi3cb73c6k0300k1yvk2nvzh6lc19qmgs9qxqm0zjh5vly"; depends=[BiocGenerics GenomicRanges IRanges lattice S4Vectors ShortRead]; };
   chopsticks = derive2 { name="chopsticks"; version="1.47.0"; sha256="0lvd5fpvlkwzplm6wpxrmi6gl35vg9li8zs8kiyf65yggp8azkd7"; depends=[survival]; };
-  chroGPS = derive2 { name="chroGPS"; version="1.99.1"; sha256="18i133z22d7pmd4xkkm2ciqpawvp7lh7sx4qkcysixxi9cdj7iix"; depends=[Biobase changepoint cluster DPpackage ellipse GenomicRanges ICSNP IRanges MASS vegan]; };
+  chroGPS = derive2 { name="chroGPS"; version="1.99.4"; sha256="10grx4zwj2w2wcf4bf09m97fi4nn31q99jrlnmpm5zfwfyh9y1nk"; depends=[Biobase changepoint cluster DPpackage ellipse GenomicRanges ICSNP IRanges MASS vegan]; };
   chromDraw = derive2 { name="chromDraw"; version="2.11.0"; sha256="17lb88jp4997nmdb7g3rmi509vn552rda603diq5qxjd8hxszhj7"; depends=[GenomicRanges Rcpp]; };
   chromPlot = derive2 { name="chromPlot"; version="1.9.0"; sha256="0g7vnv12m9db563p99kcdv9mjb5h2saxmvq810ckw3vd9hxla4sm"; depends=[biomaRt GenomicRanges]; };
-  chromVAR = derive2 { name="chromVAR"; version="1.3.0"; sha256="1vx8ai2x3mmrlpqz4kww19q6drwhs51ndfhqvcm20hnjvw4q86fb"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; };
-  chromstaR = derive2 { name="chromstaR"; version="1.7.1"; sha256="0jhli9jzxi35j8ar94wjjqbg3d3ankbizx2ck5kfpsr4kz6cf91j"; depends=[bamsignals chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; };
-  chromswitch = derive2 { name="chromswitch"; version="1.3.1"; sha256="1qylaxmyrh16gxh8l5isngs4ixk3v758f41r3nc15r1gbncdv7nx"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; };
-  cisPath = derive2 { name="cisPath"; version="1.21.0"; sha256="0bgc9jm3lkpij938yd1jni7yd4jbahqgr6s9zlzrly24f3pks24a"; depends=[]; };
-  cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.19.0"; sha256="0d7xk559jg3bik9gwzi3lh51jspmq3ain706d2cm4dq96wms03a5"; depends=[BiocGenerics BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomicRanges seqinr]; };
+  chromVAR = derive2 { name="chromVAR"; version="1.3.2"; sha256="0wg1ajyff9ly82q0468cy33iysj59dfidp2qqgkp85vik0aci1sx"; depends=[BiocGenerics BiocParallel Biostrings BSgenome DT GenomeInfoDb GenomicRanges ggplot2 IRanges Matrix miniUI nabor plotly RColorBrewer Rcpp RcppArmadillo Rsamtools Rtsne S4Vectors shiny SummarizedExperiment TFBSTools]; };
+  chromstaR = derive2 { name="chromstaR"; version="1.7.3"; sha256="0nbfzh7ks9816yllyd125nd4qm7fk5i4x36jd7wd81hp0cpb7ia5"; depends=[bamsignals chromstaRData doParallel foreach GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges mvtnorm reshape2 Rsamtools S4Vectors]; };
+  chromswitch = derive2 { name="chromswitch"; version="1.3.2"; sha256="1ls6007vz2b0ij543vgdpxv5dqbjaklv9ps81c3z6n91qf9ld2an"; depends=[Biobase BiocParallel cluster dplyr GenomicRanges gplots IRanges lazyeval magrittr matrixStats NMF rtracklayer S4Vectors tidyr]; };
+  cicero = derive2 { name="cicero"; version="0.99.57"; sha256="1gj0ckn4b3ifkvvb8lbwl83fdnmcayk3wmd83piq95j8nkaba0c8"; depends=[assertthat Biobase BiocGenerics data_table dplyr FNN GenomicRanges ggplot2 glasso Gviz igraph IRanges Matrix monocle plyr reshape2 S4Vectors stringr tibble VGAM]; };
+  cisPath = derive2 { name="cisPath"; version="1.21.1"; sha256="06s9ch9av414vqi8l6rsz8y49bklygv9m7wrvv8nmx14h6fvpbmq"; depends=[]; };
+  cleanUpdTSeq = derive2 { name="cleanUpdTSeq"; version="1.19.1"; sha256="12izlkfqx1cshb48qzn987hhanqxjfhaiiwl6lrn0xpqbw384k3y"; depends=[BiocGenerics BSgenome BSgenome_Drerio_UCSC_danRer7 e1071 GenomicRanges seqinr]; };
   cleaver = derive2 { name="cleaver"; version="1.19.0"; sha256="19jrmz8bjj9yg52j002zyf6v1as2k7m0g0msvmgvlsf0nvgk5h72"; depends=[Biostrings IRanges S4Vectors]; };
   clippda = derive2 { name="clippda"; version="1.31.0"; sha256="18jsfx4y09mzsah8w2pqwarl7h1kn76cm6sjh6r3dqikbzq24rak"; depends=[Biobase lattice limma rgl scatterplot3d statmod]; };
   clipper = derive2 { name="clipper"; version="1.21.1"; sha256="19gkqz94sxamw8gx1rib17j7sxivzflrhypkp4bsyqshkydyzgcq"; depends=[Biobase corpcor graph gRbase igraph KEGGgraph Matrix qpgraph RBGL Rcpp]; };
@@ -891,102 +957,109 @@ in with self; {
   clst = derive2 { name="clst"; version="1.29.0"; sha256="0bz0hd7zjr9a225hg1jl0r86zvdz4i9i63grg0nm0dvs32pbaf2g"; depends=[lattice ROC]; };
   clstutils = derive2 { name="clstutils"; version="1.29.0"; sha256="0fsqlx06qd7bqdnk746pcn1w29xbpcpjazsnvk1dibxyxqkbqvjh"; depends=[ape clst lattice rjson RSQLite]; };
   clustComp = derive2 { name="clustComp"; version="1.9.0"; sha256="1lmg17d3n97kp5z21wl2kyx140kmqlfwsm4q6qcq7j9zyfq2jrdc"; depends=[sm]; };
-  clusterExperiment = derive2 { name="clusterExperiment"; version="2.1.5"; sha256="0fwbvm25ymmazw4i1l1v5bd0yrihzgiqmkycfxk5ismf9nbyny13"; depends=[ape BiocGenerics cluster DelayedArray dendextend edgeR HDF5Array howmany kernlab limma locfdr matrixStats NMF phylobase RColorBrewer Rcpp RSpectra S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; };
-  clusterProfiler = derive2 { name="clusterProfiler"; version="3.9.1"; sha256="0bz6n4y10f2kgkxmsr2rf8clqfsg2drgavx0xp36jv66bp511l4d"; depends=[AnnotationDbi DOSE enrichplot ggplot2 GO_db GOSemSim magrittr plyr qvalue rvcheck tidyr]; };
-  clusterSeq = derive2 { name="clusterSeq"; version="1.5.0"; sha256="1naw9hprdgb2wxqcvjvzgmjhnl0cncixar7gzs7d63dyf9d3khzs"; depends=[baySeq BiocGenerics BiocParallel]; };
+  clusterExperiment = derive2 { name="clusterExperiment"; version="2.1.6"; sha256="0wgi8qil7vyqlqsbqm0fbk9337wvcz53xid8qy4qc5l9pipf7s4r"; depends=[ape BiocGenerics cluster DelayedArray dendextend edgeR HDF5Array howmany kernlab limma locfdr matrixStats NMF phylobase RColorBrewer Rcpp RSpectra S4Vectors scales SingleCellExperiment stringr SummarizedExperiment zinbwave]; };
+  clusterProfiler = derive2 { name="clusterProfiler"; version="3.9.2"; sha256="1y9kss22c64yk3abbcz12ph2q38xp6x38cvffnr3wcm71pa26aj2"; depends=[AnnotationDbi DOSE enrichplot ggplot2 GO_db GOSemSim magrittr plyr qvalue rvcheck tidyr]; };
+  clusterSeq = derive2 { name="clusterSeq"; version="1.5.1"; sha256="0y8a5ik310pvhbrpaf77dpdlhgsggv8b4ziw9270lw552wq6m2s2"; depends=[baySeq BiocGenerics BiocParallel]; };
   clusterStab = derive2 { name="clusterStab"; version="1.53.0"; sha256="1fz5l64c7sfzxvqrfxbwvla6k72dq32r9v9nsc4cycpmyyfvgqfg"; depends=[Biobase]; };
-  cn_farms = derive2 { name="cn.farms"; version="1.29.0"; sha256="03nq4xyq4q4x9ajlz24pda4jy2vqnxrr2jyrfy54d54qqkn6hj18"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; };
+  cn_farms = derive2 { name="cn.farms"; version="1.29.1"; sha256="0dysp6kvdgxbzjhm9sd0h9l2ckl7kvlg910bxzz192p9nlwpgc25"; depends=[affxparser Biobase DBI DNAcopy ff lattice oligo oligoClasses preprocessCore snow]; };
   cn_mops = derive2 { name="cn.mops"; version="1.27.0"; sha256="1fzsp4amldbfg2msll3synvwlwdsda1fajwsl5qxg83pcy0v8rm2"; depends=[Biobase BiocGenerics exomeCopy GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; };
   cnvGSA = derive2 { name="cnvGSA"; version="1.25.0"; sha256="0ha9nh485r7x67q25cj6r7m8lckw9bm1kvd1rvkrwn6nnlld8bn1"; depends=[brglm doParallel foreach GenomicRanges splitstackshape]; };
   coGPS = derive2 { name="coGPS"; version="1.25.0"; sha256="081ljzlc0vq19h7w31ccqxbdhi2rivi8qrrvnxw6imj0pfckn1hn"; depends=[]; };
-  coMET = derive2 { name="coMET"; version="1.13.0"; sha256="1vyzwrdf10n9ribfcacfxmsfkr6pm9g4gi90n2c5lhhn4983m1wk"; depends=[biomaRt colortools corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; };
-  cobindR = derive2 { name="cobindR"; version="1.19.0"; sha256="1hb6mwd6xqxgzdglz496cn39hmjnxs87qc0c633r6a2bhq8dpcca"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust rtfbs seqinr yaml]; };
+  coMET = derive2 { name="coMET"; version="1.13.4"; sha256="0fzgwy11jcscp207giwdwpkq5zad72sdhcd4d5qrprda8565kx33"; depends=[biomaRt colortools corrplot GenomicRanges gridExtra Gviz hash IRanges psych rtracklayer S4Vectors]; };
+  coRdon = derive2 { name="coRdon"; version="0.99.11"; sha256="1fa2zzqrnj5ggk3czvdqkn1ixha1a991xjv27plw9hvy8snvyjzc"; depends=[Biobase Biostrings data_table dplyr ggplot2 purrr]; };
+  cobindR = derive2 { name="cobindR"; version="1.19.1"; sha256="1n4yr8izd1fhn6qzcifamhvd1shah0hv06v1a097xjnghnr46r8q"; depends=[BiocGenerics biomaRt Biostrings BSgenome gmp gplots IRanges mclust rtfbs seqinr yaml]; };
   codelink = derive2 { name="codelink"; version="1.49.0"; sha256="0fqxdmzwx6vhclsamc4i0kshdnqpjpqgzrmjm2lwvjai2bnbiaz4"; depends=[annotate Biobase BiocGenerics limma]; };
   coexnet = derive2 { name="coexnet"; version="1.3.0"; sha256="0kqzvi5zs1nvcnbvgrq06fzzcfdsga5fz0r70drcsx449nkqrj5c"; depends=[acde affy Biobase GEOquery igraph limma minet rmarkdown siggenes STRINGdb SummarizedExperiment vsn]; };
-  cogena = derive2 { name="cogena"; version="1.15.0"; sha256="05hdmx7awxsrbblm0sfgszhi10wggpx2141ariy01gvha8kmm8l8"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2]; };
-  compcodeR = derive2 { name="compcodeR"; version="1.17.0"; sha256="0b591axva9x93pq7cbcg9z86n6rdnaw29q18q7cwvd44j5l8b6ah"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; };
-  condcomp = derive2 { name="condcomp"; version="0.99.1"; sha256="0493d56hqn1vrd85j7174y9i2f7whqy68nn5645fr57a0wl4bn4i"; depends=[cluster ggplot2 ggrepel outliers]; };
+  cogena = derive2 { name="cogena"; version="1.15.1"; sha256="0ch85p3abar0cahb3f8hrd28ylwbd1m7z7s28gh4wrrxx9cfqjmx"; depends=[amap apcluster Biobase biwt class cluster corrplot devtools doParallel dplyr fastcluster foreach ggplot2 gplots kohonen mclust reshape2]; };
+  compEpiTools = derive2 { name="compEpiTools"; version="1.15.3"; sha256="06m6kd2c6cadnsl8lq3dna1kxyc7sgr14g9qbjr3qf40kc2njmka"; depends=[AnnotationDbi BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges GO_db gplots IRanges methylPipe Rsamtools S4Vectors topGO XVector]; };
+  compcodeR = derive2 { name="compcodeR"; version="1.17.2"; sha256="0p8mv2pw8hrv23yswqavagii5ascppmgm89zq7589xnc20bl70yh"; depends=[caTools edgeR gdata ggplot2 gplots gtools KernSmooth knitr lattice limma markdown MASS modeest ROCR sm stringr vioplot]; };
+  condcomp = derive2 { name="condcomp"; version="0.99.2"; sha256="1wckrk43h6ab30caqvffrxlssib2iigagqlpbifwf6l2856c642i"; depends=[cluster ggplot2 ggrepel outliers]; };
+  consensus = derive2 { name="consensus"; version="0.99.17"; sha256="0ipdx2qazvh2aliz1k48cq6k21vn40wql1h67qgcnb5s8s10k24a"; depends=[gplots matrixStats RColorBrewer]; };
+  consensusDE = derive2 { name="consensusDE"; version="0.99.10"; sha256="1zx233m9d65xvsjwgm1m54sqqvp3fjjcxi0yj1j7by3a96yhy7my"; depends=[airway AnnotationDbi Biobase BiocParallel Biostrings dendextend DESeq2 EDASeq edgeR GenomicAlignments GenomicFeatures limma pcaMethods RColorBrewer Rsamtools RUVSeq S4Vectors SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm3_ensGene]; };
   consensusOV = derive2 { name="consensusOV"; version="1.3.0"; sha256="0jk776svh4krp1cj77sy9lrp3rx6ka8vbc4xz1armf9vd9sn0ln8"; depends=[Biobase gdata genefu GSVA limma matrixStats randomForest]; };
   consensusSeekeR = derive2 { name="consensusSeekeR"; version="1.9.0"; sha256="0hdfnvvd06s2pbrsbrcp6nky7clvj2xqdf3d6x728mxfv17yflrl"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges IRanges rtracklayer S4Vectors stringr]; };
-  contiBAIT = derive2 { name="contiBAIT"; version="1.9.0"; sha256="1fgff5pr9ggqpl85yh410lspq0mbq9r264rsw716hqjy2rm6g8bd"; depends=[BH BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; };
+  contiBAIT = derive2 { name="contiBAIT"; version="1.9.1"; sha256="0nli8r7wn20f92wax39gk8nawbiy8xjdxfv7r8267n9cmfdywxhm"; depends=[BH BiocParallel clue cluster colorspace data_table diagram DNAcopy exomeCopy GenomicAlignments GenomicFiles GenomicRanges ggplot2 gplots gtools IRanges Rcpp reshape2 Rsamtools rtracklayer S4Vectors TSP]; };
   conumee = derive2 { name="conumee"; version="1.15.0"; sha256="1xpq77j6zwqj3s8qxjvnzvrwk27g6cipqp8k8g1x61ayalw5mwn9"; depends=[DNAcopy GenomeInfoDb GenomicRanges IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest IRanges minfi rtracklayer]; };
   convert = derive2 { name="convert"; version="1.57.0"; sha256="1bfwmxcvg3dxygzbl290l645ri610fxymvba349hj785w9v09hgi"; depends=[Biobase limma marray]; };
   copa = derive2 { name="copa"; version="1.49.0"; sha256="08myzip07f28iyyf1v28y60pwmyabv7yhbd1y9avmmfa8swh4zav"; depends=[Biobase]; };
   copynumber = derive2 { name="copynumber"; version="1.21.0"; sha256="1qcrq5ls1rj5had0v2abcya5bbm1mpni97lxvlm75yxpalkrbmg1"; depends=[BiocGenerics GenomicRanges IRanges S4Vectors]; };
-  coseq = derive2 { name="coseq"; version="1.5.1"; sha256="0b5680pzwalgl8dfdclc03cp9742ap65d16h86h150h72h55cvh1"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 gridExtra HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; };
+  coseq = derive2 { name="coseq"; version="1.5.2"; sha256="1hx8brqi422k5q9isbdfrp1799c161yjkfad2hq9zw3rkjj3hbyf"; depends=[BiocParallel capushe compositions corrplot DESeq2 e1071 edgeR ggplot2 HTSCluster HTSFilter mvtnorm Rmixmod S4Vectors scales SummarizedExperiment]; };
   cosmiq = derive2 { name="cosmiq"; version="1.15.2"; sha256="1n91gp3v27924pavlm4kkidihzhdgj5p679x5krxkqf430f3kbk4"; depends=[faahKO MassSpecWavelet pracma Rcpp xcms]; };
+  countsimQC = derive2 { name="countsimQC"; version="0.99.4"; sha256="0fnjl8pan117fcaxvpbcplrlqcd3sx2pq7ddcwy4qvhphbksk148"; depends=[caTools DESeq2 dplyr DT edgeR genefilter GenomeInfoDbData ggplot2 randtests rmarkdown SummarizedExperiment tidyr]; };
   covEB = derive2 { name="covEB"; version="1.7.0"; sha256="01qy9713bixj1nbdhafyappbm0m6q6k769akzysvcb4cs74isq3x"; depends=[Biobase gsl igraph LaplacesDemon Matrix mvtnorm]; };
-  covRNA = derive2 { name="covRNA"; version="1.7.0"; sha256="06rx0g294hndxkb2rgjghn7jbw0vn63wy54705s57wmi0cacq8dd"; depends=[ade4 Biobase genefilter]; };
+  covRNA = derive2 { name="covRNA"; version="1.7.1"; sha256="09915p41xmb4gxl9nhpy8qrlpf4z1dlc9g3yi1j73a49kvgamlaa"; depends=[ade4 Biobase genefilter]; };
   cpvSNP = derive2 { name="cpvSNP"; version="1.13.0"; sha256="0wv304nisngcbc8as6anlb7i090wl078rs0pclix975akj9s4zpw"; depends=[BiocParallel corpcor GenomicFeatures ggplot2 GSEABase plyr]; };
   cqn = derive2 { name="cqn"; version="1.27.0"; sha256="1680ww5rr4y1jqhb267hbgk77ha87awbjrl3id5cz7d7ps75a7fb"; depends=[mclust nor1mix preprocessCore quantreg]; };
-  crisprseekplus = derive2 { name="crisprseekplus"; version="1.7.0"; sha256="01s08znfbd4am3lxm42664jx5qkjm383w50k36f2linrsg8j2rdc"; depends=[AnnotationDbi BiocInstaller BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; };
-  crlmm = derive2 { name="crlmm"; version="1.39.0"; sha256="1piwi4w7shmszq2kbcw400jp0iqjhjv6q7kd7zpa4yqnh35dxa8q"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; };
-  csaw = derive2 { name="csaw"; version="1.15.7"; sha256="18wy6q7qb4zif2sjgr0fygq6y3yj706iijib6dw2ywb4xsb7gqy8"; depends=[AnnotationDbi BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicFeatures GenomicRanges IRanges limma Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; };
+  crisprseekplus = derive2 { name="crisprseekplus"; version="1.7.3"; sha256="07fcgm24mfxxa7nv68kdd5pawkq46n2p9i3k2pmpfa07irywizf6"; depends=[AnnotationDbi BiocManager BSgenome CRISPRseek DT GenomicFeatures GenomicRanges GUIDEseq hash shiny shinyjs]; };
+  crlmm = derive2 { name="crlmm"; version="1.39.1"; sha256="1mb7zpqb9qfpjg8samrdd5pxgj64ganm7mkh2y7aa3vlhj450rmx"; depends=[affyio beanplot Biobase BiocGenerics ellipse ff foreach illuminaio lattice limma matrixStats mvtnorm oligoClasses preprocessCore RcppEigen SNPchip VGAM]; };
+  crossmeta = derive2 { name="crossmeta"; version="1.7.1"; sha256="0n5g234ghcan9jx1cavpzngypjjcrg7lz621czfg8d0rfj8wavs9"; depends=[affxparser affy AnnotationDbi Biobase BiocGenerics BiocManager ccmap data_table doParallel doRNG DT fdrtool foreach GEOquery ggplot2 limma matrixStats metaMA metap miniUI oligo pander plotly RColorBrewer rdrop2 reshape shiny stringr sva]; };
+  csaw = derive2 { name="csaw"; version="1.15.9"; sha256="0p5clsxqfy8ihsh8lxvhl8ally5gi1k6v7cclvp8kvvwj5mvcg6p"; depends=[AnnotationDbi BiocGenerics BiocParallel edgeR GenomeInfoDb GenomicFeatures GenomicRanges IRanges limma Rcpp Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; };
   ctc = derive2 { name="ctc"; version="1.55.0"; sha256="0zkzdv3yrrr671bvr0j7xi1c358r7k09f96x5sciljg95gwpq6fm"; depends=[amap]; };
-  ctsGE = derive2 { name="ctsGE"; version="1.7.1"; sha256="1m8fm0339d17hfprwgpck31dqmm9cf1ajk60rii32sphv8x1h0r8"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; };
+  ctsGE = derive2 { name="ctsGE"; version="1.7.2"; sha256="1qykz2w7c0v7zs9ga0crvdydi57sqbfkg0i14rfr9mrh2cn874la"; depends=[ccaPP ggplot2 limma reshape2 shiny stringr]; };
   cummeRbund = derive2 { name="cummeRbund"; version="2.23.0"; sha256="12npw9nr02fs1lyj1fism4zbw1vbd47rxyyc21z8kx9ra5c76df9"; depends=[Biobase BiocGenerics fastcluster ggplot2 Gviz plyr reshape2 RSQLite rtracklayer S4Vectors]; };
+  customProDB = derive2 { name="customProDB"; version="1.21.5"; sha256="01fkp1bhk21flb3ik38i533zxdzv2g1qfp9bp0b91r29z5rp8nz9"; depends=[AhoCorasickTrie AnnotationDbi biomaRt Biostrings DBI GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges plyr RCurl Rsamtools RSQLite rtracklayer S4Vectors stringr VariantAnnotation]; };
   cycle = derive2 { name="cycle"; version="1.35.0"; sha256="0wij6y9alg55kric7bs8syrw8ypd5w0iayh057qcl9qqr5lp1vq7"; depends=[Biobase Mfuzz]; };
-  cydar = derive2 { name="cydar"; version="1.5.0"; sha256="1qch98a8p1wmyaccz7zg1vsamikr8rmrqki9w5ahkdn5f05z7fs4"; depends=[Biobase BiocParallel flowCore Rcpp S4Vectors shiny SummarizedExperiment viridis]; };
+  cydar = derive2 { name="cydar"; version="1.5.9"; sha256="0c7k6c02yqs5nr8pirvcgdmjgqhg7ynml1sf4fsjj6m0jbqrp29p"; depends=[Biobase BiocGenerics BiocNeighbors BiocParallel flowCore Rcpp S4Vectors shiny SingleCellExperiment SummarizedExperiment viridis]; };
   cytofkit = derive2 { name="cytofkit"; version="1.13.0"; sha256="0dl0y609w2y3wpncw4mxhflrnq1ymdmzp8qwnrlc13ykkrcwh40w"; depends=[Biobase colourpicker destiny doParallel e1071 flowCore FlowSOM ggplot2 ggrepel gplots igraph pdist plyr RANN Rcpp reshape2 Rtsne shiny shinyFiles vegan VGAM]; };
-  cytolib = derive2 { name="cytolib"; version="1.3.0"; sha256="0zyfs7j7jijrrg7v8zf77nlad63x8id2f9bpcid4pn61qlqxqhgf"; depends=[BH RProtoBufLib]; };
+  cytolib = derive2 { name="cytolib"; version="1.3.2"; sha256="10c9f7fqa5qbcxbs985ad3lljbmgfnwgcgfkp95yhahr97jb7w3s"; depends=[BH RProtoBufLib]; };
   dSimer = derive2 { name="dSimer"; version="1.7.0"; sha256="0ra9y6df21s97pa8810dzbcwjhbh9br86mlqkgvvrq5rxwj97a35"; depends=[AnnotationDbi ggplot2 GO_db igraph org_Hs_eg_db Rcpp reshape2]; };
   daMA = derive2 { name="daMA"; version="1.53.0"; sha256="1ahmx5c58az3s3jybz3gx7g853n0qy7b84rm7gq157yi4iil01wf"; depends=[MASS]; };
-  dada2 = derive2 { name="dada2"; version="1.9.0"; sha256="1w8lq1ikzfa2dzmx0bk1p3v88af9ddhv8fqqkvh2pr1n71r09nrc"; depends=[BiocGenerics Biostrings data_table ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; };
-  dagLogo = derive2 { name="dagLogo"; version="1.19.0"; sha256="0bp4cclcwc6asnk5s9fzzcq17lv5fz93j0smsszq3csl99qpiwmi"; depends=[biomaRt Biostrings grImport motifStack pheatmap]; };
+  dada2 = derive2 { name="dada2"; version="1.9.3"; sha256="1qqw51pvgvwznx3v81xbn9qakxd6s9yl8f2pxbzr0ampgm22s9yn"; depends=[BiocGenerics Biostrings data_table ggplot2 IRanges Rcpp RcppParallel reshape2 ShortRead XVector]; };
+  dagLogo = derive2 { name="dagLogo"; version="1.19.1"; sha256="1y966jzzy7357gr2vdq0qgkwvbdq8pls51vfmmwka9c2zqnsdxdm"; depends=[biomaRt Biostrings grImport motifStack pheatmap]; };
   dcGSA = derive2 { name="dcGSA"; version="1.9.0"; sha256="0d85qpq1v9sky5x8nv5w0hfry9w833kkljq5laa2x3n10czp1hb3"; depends=[BiocParallel Matrix]; };
-  ddCt = derive2 { name="ddCt"; version="1.37.0"; sha256="11nh9xzx3iyvbb1k40581ym17a0l2brcqmscx9riyh8bzh7jh1h0"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; };
-  ddPCRclust = derive2 { name="ddPCRclust"; version="1.1.1"; sha256="0lykdnbhl19nx00yxp09a2nvi10yq13dpqy30ixvbcjl04562j2q"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; };
-  debrowser = derive2 { name="debrowser"; version="1.9.0"; sha256="099gdj0vxihwyb35pfk3hhfay7zyz3nirzlzccnjknrybfdyd7i3"; depends=[annotate AnnotationDbi baySeq clusterProfiler d3heatmap DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 ggvis googleAuthR gplots igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva V8]; };
-  decontam = derive2 { name="decontam"; version="1.1.0"; sha256="1chys2j507y4pqcca2vsf905qz7g7vw71f3rapxq39mhzp4bcjda"; depends=[ggplot2 reshape2]; };
-  deepSNV = derive2 { name="deepSNV"; version="1.27.2"; sha256="0rm1wvw8qq20d4dcqijbsizhnyyrdvl6wwb6gfvafq5rzfdi01xc"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; };
-  deltaGseg = derive2 { name="deltaGseg"; version="1.21.0"; sha256="1378dj1gghsphwwbhbfixbnf49lfjxy0dn297b5lsjh2h40znc2z"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; };
-  derfinder = derive2 { name="derfinder"; version="1.15.0"; sha256="199nk5kjza1cy9rclgff6qq2pkzw5lfg69y9s60hbyd0hacxsqxx"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; };
-  derfinderHelper = derive2 { name="derfinderHelper"; version="1.15.0"; sha256="1v32nrznh4nm67fsjqcqbj3ifb8hiddqfcmg8nlwmgiwq78fxksi"; depends=[IRanges Matrix S4Vectors]; };
-  derfinderPlot = derive2 { name="derfinderPlot"; version="1.15.0"; sha256="1zabxardj0gw8b4bscpkdxbddcd5ygxpgv0da6c7i04jp5qb80sg"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer RefManageR reshape2 S4Vectors scales]; };
+  ddCt = derive2 { name="ddCt"; version="1.37.1"; sha256="1bysg67mqyrx6fqxsfbxbn4fw3brpyw0nyrvxkgbh6kwwwaccwaw"; depends=[Biobase BiocGenerics lattice RColorBrewer xtable]; };
+  ddPCRclust = derive2 { name="ddPCRclust"; version="1.1.2"; sha256="0d09vdwrv9kifgld4g3342xrcfi85y46nnl1pq4yv1n8dx14k3ms"; depends=[clue flowCore flowDensity flowPeaks ggplot2 openxlsx plotrix R_utils SamSPECTRAL]; };
+  debrowser = derive2 { name="debrowser"; version="1.9.21"; sha256="0a4nzgw4066a9ryanvdjrbscbns6a74js3c0gadw7q19b824gv6i"; depends=[annotate AnnotationDbi baySeq clusterProfiler colourpicker d3heatmap DESeq2 DOSE DT edgeR enrichplot GenomicRanges ggplot2 googleAuthR gplots Harman heatmaply igraph IRanges jsonlite limma org_Hs_eg_db org_Mm_eg_db pathview plotly RColorBrewer RCurl reshape2 S4Vectors shiny shinyBS shinydashboard shinyjs stringi SummarizedExperiment sva V8]; };
+  decontam = derive2 { name="decontam"; version="1.1.2"; sha256="0p3kdcwl0gph9mdffd7jmycpcj1kbk8rgcwhp0idkm2xbfnra4n2"; depends=[ggplot2 reshape2]; };
+  deepSNV = derive2 { name="deepSNV"; version="1.27.3"; sha256="02wn7y8dbikllpmgbq5fksxvbw6dnz3hkl1lvjd9ff6avsrpyzjs"; depends=[Biostrings GenomicRanges IRanges Rhtslib SummarizedExperiment VariantAnnotation VGAM]; };
+  deltaGseg = derive2 { name="deltaGseg"; version="1.21.1"; sha256="1mrm1j816j8b9myzy8az16sg8v1g5ynxv1j2dpwbqg003pm9b2zn"; depends=[changepoint fBasics ggplot2 pvclust reshape scales tseries wavethresh]; };
+  derfinder = derive2 { name="derfinder"; version="1.15.4"; sha256="1qyblw4iy33r37k9zfsbf6rbgx8fnz89wv99dy3xibiw07hahgf1"; depends=[AnnotationDbi BiocGenerics BiocParallel bumphunter derfinderHelper GenomeInfoDb GenomicAlignments GenomicFeatures GenomicFiles GenomicRanges Hmisc IRanges qvalue Rsamtools rtracklayer S4Vectors]; };
+  derfinderHelper = derive2 { name="derfinderHelper"; version="1.15.2"; sha256="1xgzx1q2fzglnrn3xyqmhbzf9rl56wbfdc4n0fy0lfrg13rb5kq1"; depends=[IRanges Matrix S4Vectors]; };
+  derfinderPlot = derive2 { name="derfinderPlot"; version="1.15.2"; sha256="0vp6x6dd8ykvgaic82crykhddykiz9y3ji7nmg2j66cklsvp018s"; depends=[derfinder GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 IRanges limma plyr RColorBrewer RefManageR reshape2 S4Vectors scales]; };
   destiny = derive2 { name="destiny"; version="2.11.3"; sha256="0z9z0frhif84rshnpffizjjv2ckr1mp7vqlk9r3fyyxzz1pkrl29"; depends=[Biobase BiocGenerics ggplot2 ggthemes igraph Matrix proxy Rcpp RcppEigen scales scatterplot3d smoother SummarizedExperiment VIM]; };
-  dexus = derive2 { name="dexus"; version="1.21.0"; sha256="0p7ihli3la0x42v042azwxnjhwn6h8vlnfs8rrbg5wbpz1i3nsy9"; depends=[BiocGenerics]; };
+  dexus = derive2 { name="dexus"; version="1.21.1"; sha256="00yld22dj4i9ci2jniqycxcli0xg0k06n02cg3i0lj03g4ml202h"; depends=[BiocGenerics]; };
   diffGeneAnalysis = derive2 { name="diffGeneAnalysis"; version="1.63.0"; sha256="19g9azy3s359k84rg677l0yndq13h48fs0rmddrs4z8z8w4k2n9h"; depends=[minpack_lm]; };
-  diffHic = derive2 { name="diffHic"; version="1.13.3"; sha256="0ka8kma6imv3i2j1y2p83aandrmpvj6w1wqj5dsanx4mh6f316vk"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools S4Vectors SummarizedExperiment zlibbioc]; };
-  diffcoexp = derive2 { name="diffcoexp"; version="1.1.0"; sha256="1dmf32f2mq4m71nbr8g5bhkv8wl8lhyljs5jgpnkzw7ibfaisr6j"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; };
-  diffcyt = derive2 { name="diffcyt"; version="1.1.1"; sha256="17g08x65glkgjn5h24h45fi9qdq53s9bmn323zpnc6012p8cx8vb"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; };
+  diffHic = derive2 { name="diffHic"; version="1.13.7"; sha256="07w2djzjsla6z7dy2g2dr0zfc7p1r88i6vgs4fmp0jr0ifsc3dal"; depends=[BiocGenerics Biostrings BSgenome csaw edgeR GenomeInfoDb GenomicRanges InteractionSet IRanges limma locfit Rcpp rhdf5 Rhtslib Rsamtools rtracklayer S4Vectors SummarizedExperiment zlibbioc]; };
+  diffcoexp = derive2 { name="diffcoexp"; version="1.1.2"; sha256="1nrhdhzz5768ah9p3z5xszn48q6swawz3k9d72lxywm1yx0yqy5c"; depends=[BiocGenerics DiffCorr igraph psych SummarizedExperiment WGCNA]; };
+  diffcyt = derive2 { name="diffcyt"; version="1.1.11"; sha256="1chm02ixzh7627xmdpb91zhymamxnc2j3n7di97yc1fgv83bm0bx"; depends=[circlize ComplexHeatmap dplyr edgeR flowCore FlowSOM limma lme4 magrittr multcomp reshape2 S4Vectors SummarizedExperiment tidyr]; };
   diffloop = derive2 { name="diffloop"; version="1.9.0"; sha256="0wfnh79xkfkkzm3rkx90i0ij81l33ssm03b91mfq02yzijqv5dzv"; depends=[Biobase biomaRt data_table dplyr edgeR foreach GenomeInfoDb GenomicRanges ggplot2 IRanges limma locfit matrixStats pbapply plyr readr reshape2 rtracklayer S4Vectors statmod Sushi]; };
-  diffuStats = derive2 { name="diffuStats"; version="0.105.0"; sha256="1dhnqf2nljmc3pvn9hwmnihlgg5qwjnh5almfzw9vgnwm10yrkjl"; depends=[expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; };
-  diggit = derive2 { name="diggit"; version="1.13.0"; sha256="1zy4na2sa2g8vg7aw6n8k3965yyhal0sp6f8rrgwgh3wd8w1zf56"; depends=[Biobase ks viper]; };
-  discordant = derive2 { name="discordant"; version="1.5.0"; sha256="1lnljhz2xa7xfdbi8dwq1nzdm0w9j35251yh0dndhrq0sck1a3dg"; depends=[Biobase biwt gtools MASS]; };
+  diffuStats = derive2 { name="diffuStats"; version="1.1.0"; sha256="02269q356hvddnsi87p141cdyl1bmprarm9hqvpyjj244a8nirrv"; depends=[expm igraph MASS Matrix plyr precrec Rcpp RcppArmadillo RcppParallel]; };
+  diggit = derive2 { name="diggit"; version="1.13.1"; sha256="1sryn5n6vrc9cf7gsz9xgg6hp9gn18m7h9zz286l1p5cvmk4y1i9"; depends=[Biobase ks viper]; };
+  discordant = derive2 { name="discordant"; version="1.5.2"; sha256="011vh7xzxldfmid6w4g29b7s4w81lqifwxfj6r0d6725pa3bcxb4"; depends=[Biobase biwt gtools MASS]; };
   dks = derive2 { name="dks"; version="1.27.0"; sha256="04da9f6ckqzw8dppxrrcc7aqgkb980jq1g15dkmzx9ys54bnhh78"; depends=[cubature]; };
-  dmrseq = derive2 { name="dmrseq"; version="1.1.12"; sha256="0whd2fwvbf7xxxdw2dmfpn1xp3xp7w8jli9n0nj2yi0p0a98889n"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; };
-  doppelgangR = derive2 { name="doppelgangR"; version="1.9.5"; sha256="16d6j10b57llfwvg7kcimmhisg1rqmnvv3pb46fgn1mldahmiziq"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; };
-  drawProteins = derive2 { name="drawProteins"; version="1.1.0"; sha256="1bhdz04d8xv8hx821n6scni9gpc8r6qqs954i9dc1p366x995y8c"; depends=[dplyr ggplot2 httr]; };
+  dmrseq = derive2 { name="dmrseq"; version="1.1.21"; sha256="15jvpy5n27vdb387qmcv63c2fs5pnx5zdsg1h2b99cil650b1c0s"; depends=[AnnotationHub annotatr BiocParallel bsseq bumphunter DelayedMatrixStats GenomeInfoDb GenomicRanges ggplot2 IRanges locfit matrixStats nlme outliers RColorBrewer rtracklayer S4Vectors]; };
+  doppelgangR = derive2 { name="doppelgangR"; version="1.9.6"; sha256="07y79wbb82j4iqh04rcjg66qkngply7s4b2hcmc5i6g5ycar5cmv"; depends=[Biobase BiocParallel digest impute mnormt SummarizedExperiment sva]; };
+  drawProteins = derive2 { name="drawProteins"; version="1.1.1"; sha256="12n5pi0yj692k9wridiwnjazcajknlpvjbl7wav6408lg4ph5z6p"; depends=[dplyr ggplot2 httr readr stringr]; };
   dualKS = derive2 { name="dualKS"; version="1.41.0"; sha256="125gpaykiy2cplkvixghj2c1xh08zga7jvi2xmsh0j1illdssab5"; depends=[affy Biobase]; };
-  dupRadar = derive2 { name="dupRadar"; version="1.11.0"; sha256="17m3xmw8m4qaljlz3kw158mrnqcm3ss0c8dqla8j4p33mfyzc7qy"; depends=[Rsubread]; };
-  dyebias = derive2 { name="dyebias"; version="1.41.0"; sha256="0c4z54pw2pdfg4z2mm70w6h4my2kv1swndy50r4bjv0ll46yyvcs"; depends=[Biobase marray]; };
+  dupRadar = derive2 { name="dupRadar"; version="1.11.1"; sha256="0myl9j77gpjgkqz24vxnf8x889qa06xr54bgmr32jhb0n6i9km90"; depends=[Rsubread]; };
+  dyebias = derive2 { name="dyebias"; version="1.41.2"; sha256="0mjin0pvpi9z9vq8pj5smbz4968za5n31aclgwaiydy5lfmqd6zz"; depends=[Biobase marray]; };
   easyRNASeq = derive2 { name="easyRNASeq"; version="2.17.0"; sha256="0siki1k4qvkgkyhldrz7i05vhria9nd9yvf848a4gkx4l68v2189"; depends=[Biobase BiocGenerics BiocParallel biomaRt Biostrings DESeq edgeR GenomeInfoDb genomeIntervals GenomicAlignments GenomicRanges IRanges locfit LSD Rsamtools S4Vectors ShortRead SummarizedExperiment]; };
   ecolitk = derive2 { name="ecolitk"; version="1.53.0"; sha256="14df276m23zlmz6q2lhbv2j91wj2jaxhs6wnl5x5gnjj1p8jv6wj"; depends=[Biobase]; };
-  edge = derive2 { name="edge"; version="2.13.0"; sha256="1y1g10lkpkv0z6sk79ir91jarx0gdl9fy5lx4snykq1amk7b9ib1"; depends=[Biobase jackstraw MASS qvalue snm sva]; };
-  edgeR = derive2 { name="edgeR"; version="3.23.3"; sha256="0lz12phiqppzyvq1mf6gfdvzpqf2jpf0635n6vym7nqpxpksrgiy"; depends=[limma locfit Rcpp]; };
-  eegc = derive2 { name="eegc"; version="1.7.4"; sha256="1q3fslmrw66z7x3anl8w7hszgz5qlq2f7d9hp9r6x4acipxni5ff"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; };
-  eiR = derive2 { name="eiR"; version="1.21.0"; sha256="0s0xrnxzrwp4cc0jw3a0vpx7psyiwjz4a5y3ajxr68lq7k09hdma"; depends=[BiocGenerics ChemmineR DBI digest gespeR RcppAnnoy RCurl RUnit snow snowfall]; };
+  edge = derive2 { name="edge"; version="2.13.2"; sha256="1qjsxydfdzr2zrz5ns69w743rsfhxcmp7i13ax7pz5kry2sf0hl1"; depends=[Biobase jackstraw MASS qvalue snm sva]; };
+  edgeR = derive2 { name="edgeR"; version="3.23.7"; sha256="0mwx3qqf2c8g9p03qxy2qixri8jm2wxd642zskl2173r05iba2sm"; depends=[limma locfit Rcpp]; };
+  eegc = derive2 { name="eegc"; version="1.7.5"; sha256="1dhfzsi0avamj3bnp0p99ba3lc5dw83b0pl7idfhnh5yp4imv6nf"; depends=[AnnotationDbi clusterProfiler DESeq2 DOSE edgeR ggplot2 gplots igraph limma org_Hs_eg_db org_Mm_eg_db pheatmap R_utils S4Vectors sna wordcloud]; };
+  eiR = derive2 { name="eiR"; version="1.21.1"; sha256="0zk1jf0n2kpajqpnlwwi2814vrbmy8gixnnkapflcbdl0z25m25z"; depends=[BiocGenerics ChemmineR DBI digest gespeR RcppAnnoy RCurl RUnit snow snowfall]; };
   eisa = derive2 { name="eisa"; version="1.33.0"; sha256="18jk4iwav2r95wfjynl9dwnhsm5n97kq0i7xv5dhgw2gqh5yfv64"; depends=[AnnotationDbi Biobase BiocGenerics Category DBI genefilter isa2]; };
-  enrichplot = derive2 { name="enrichplot"; version="1.1.2"; sha256="0hnh32gkayps5zh7hddgwrsyskq19i2wqbs1ph627fbckk1xqzlr"; depends=[AnnotationDbi cowplot DOSE ggplot2 ggraph ggridges GOSemSim igraph reshape2 UpSetR]; };
-  ensemblVEP = derive2 { name="ensemblVEP"; version="1.23.0"; sha256="0sz0xsnw4ycq1rja9nzdzayralrnvnds6adxg1bzbgsgnhfi9qv0"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; };
-  ensembldb = derive2 { name="ensembldb"; version="2.5.2"; sha256="047c06v6d3qxw72bj0ynqvh3sk9jyv3pswf15i132qg12jq7yn8r"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; };
-  epiNEM = derive2 { name="epiNEM"; version="1.5.0"; sha256="1kiaz5w2c793n3038qr8jyjgbw0shn8ljrargl0pk3d0i66cqah4"; depends=[BoolNet e1071 graph gtools igraph lattice latticeExtra minet nem pcalg RColorBrewer]; };
+  enrichplot = derive2 { name="enrichplot"; version="1.1.7"; sha256="14i800cnlgc8bm8g5rlgl4rd9ajbpgljg3bhqh89zfgvvj6xy3v1"; depends=[AnnotationDbi cowplot DOSE europepmc ggplot2 ggplotify ggraph ggridges GOSemSim gridExtra igraph purrr RColorBrewer reshape2 UpSetR]; };
+  ensemblVEP = derive2 { name="ensemblVEP"; version="1.23.1"; sha256="0sh1c2pmyp3lxabm2if4266mczb1as562hbyzxd3dq79n7s0wijj"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges S4Vectors SummarizedExperiment VariantAnnotation]; };
+  ensembldb = derive2 { name="ensembldb"; version="2.5.9"; sha256="0sbrcfg4d8yqpls11ba05qgddg1y8s23fpq68560wrzippz4j2p7"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings curl DBI GenomeInfoDb GenomicFeatures GenomicRanges IRanges ProtGenerics Rsamtools RSQLite rtracklayer S4Vectors]; };
+  epiNEM = derive2 { name="epiNEM"; version="1.5.2"; sha256="1wqn5mqjxw6i21byig7b0cypiws6kjq6vjwcafg6dxry2fx675iw"; depends=[BoolNet e1071 graph gtools igraph lattice latticeExtra minet nem pcalg RColorBrewer]; };
   epigenomix = derive2 { name="epigenomix"; version="1.21.0"; sha256="11vcdklmg7ghwr3da1n5bnm272m0wgqinhc1gj3i6wpgcvijnwr3"; depends=[beadarray Biobase BiocGenerics GenomeInfoDb GenomicRanges IRanges MCMCpack Rsamtools S4Vectors SummarizedExperiment]; };
-  epivizr = derive2 { name="epivizr"; version="2.11.0"; sha256="14mmgfl9hqyx760l1c56hgfswbqpr34afvlyzjc459kyr8i57b5q"; depends=[epivizrData epivizrServer GenomicRanges IRanges S4Vectors]; };
-  epivizrChart = derive2 { name="epivizrChart"; version="1.3.0"; sha256="0gbisd84w11fyl4zwwhakv2vv729ly9vh88zwixv46y4y1lln92v"; depends=[epivizrData epivizrServer htmltools rjson]; };
-  epivizrData = derive2 { name="epivizrData"; version="1.9.0"; sha256="1r6pqsl8fyzqgwmg5msad2bsh7drgbyk39sn84pfrrv66zpp6yxj"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; };
-  epivizrServer = derive2 { name="epivizrServer"; version="1.9.1"; sha256="01177j6yhiwbiarpj0v98dv4rcfhxyj9s7brxmzi9s3qrkfw9787"; depends=[httpuv mime R6 rjson]; };
-  epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.9.0"; sha256="1jkhwa3wc391x961hy9k5bhbp5zjijs7y9fjy836yc54kdxghdq4"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; };
+  epivizr = derive2 { name="epivizr"; version="2.11.1"; sha256="08x7zbqpi3mrgkilibm0nrkqv7v4zr4l6a0xzgln3y4ns226lvy1"; depends=[epivizrData epivizrServer GenomicRanges IRanges S4Vectors]; };
+  epivizrChart = derive2 { name="epivizrChart"; version="1.3.4"; sha256="18j25cyimifrblfipfjlazhpp10h606shgw9rq7b351gnr6a92ac"; depends=[BiocGenerics epivizrData epivizrServer htmltools rjson]; };
+  epivizrData = derive2 { name="epivizrData"; version="1.9.4"; sha256="0fscvaq46rvnvpcbzli8mrk4ig7ik6q7yprgf1dmj40a7pcx48j3"; depends=[Biobase ensembldb epivizrServer GenomeInfoDb GenomicFeatures GenomicRanges IRanges OrganismDbi S4Vectors SummarizedExperiment]; };
+  epivizrServer = derive2 { name="epivizrServer"; version="1.9.4"; sha256="0pxpmqbkwsh4g72zdr7c0dsxwxm538cs1fv6y1ns1mpiv9k4wmcl"; depends=[httpuv mime R6 rjson]; };
+  epivizrStandalone = derive2 { name="epivizrStandalone"; version="1.9.1"; sha256="0snqd11np3zksrxmya5pb6fbwx5k3iipqika1ig3wmvry1czrsr9"; depends=[BiocGenerics epivizr epivizrServer GenomeInfoDb GenomicFeatures git2r S4Vectors]; };
   erccdashboard = derive2 { name="erccdashboard"; version="1.15.0"; sha256="0g8b2ngfc5a6cagpiqh1q2k66s3d275r03z1yb2lvaqv1bprx0s7"; depends=[edgeR ggplot2 gplots gridExtra gtools limma locfit MASS plyr qvalue reshape2 ROCR scales stringr]; };
   erma = derive2 { name="erma"; version="0.13.1"; sha256="01s2rpcbhd9hi2md5nzccral4ffp3xjl3qkkhm42q114dfbk5ccp"; depends=[AnnotationDbi Biobase BiocGenerics BiocParallel GenomeInfoDb GenomicFiles GenomicRanges ggplot2 Homo_sapiens IRanges rtracklayer S4Vectors shiny SummarizedExperiment]; };
-  esATAC = derive2 { name="esATAC"; version="1.3.1"; sha256="0jdn6xhwvlsv6gh0lhmwkznlnv71dd3875qvna5livjvs2m8m84w"; depends=[AnnotationDbi BiocGenerics BiocInstaller Biostrings BSgenome ChIPseeker clusterProfiler corrplot DiagrammeR digest GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2016 knitr magrittr motifmatchr R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; };
-  esetVis = derive2 { name="esetVis"; version="1.7.1"; sha256="0xhgq2w38wfyg1ixh455ppi0880yfp44ld8y44l8yz2646qp904d"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; };
+  esATAC = derive2 { name="esATAC"; version="1.3.6"; sha256="1qwq2vchc1jyqy6h141ygkibz1i5nxfvciv7mqkz7sp6a3i2a149"; depends=[AnnotationDbi BiocGenerics BiocManager Biostrings BSgenome ChIPseeker clusterProfiler corrplot DiagrammeR digest GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 igraph IRanges JASPAR2016 knitr magrittr motifmatchr R_utils Rbowtie2 Rcpp rJava rmarkdown Rsamtools rtracklayer S4Vectors ShortRead TFBSTools VennDiagram]; };
+  esetVis = derive2 { name="esetVis"; version="1.7.3"; sha256="0yr2rbpj2rddr50v4ws21jl16ylnjan5ag7m629lcrp34lxn7b73"; depends=[Biobase hexbin MASS MLP mpm Rtsne]; };
   eudysbiome = derive2 { name="eudysbiome"; version="1.11.0"; sha256="0372hl9jsk225zjm3ca63q95x4rcnj4i13r7192gfxzisy7y9i36"; depends=[Biostrings plyr R_utils Rsamtools]; };
   exomeCopy = derive2 { name="exomeCopy"; version="1.27.0"; sha256="003r5750vnadkvc19aaw8rf4qlfs1015nmndmsaazbg70dwkkdyl"; depends=[GenomeInfoDb GenomicRanges IRanges Rsamtools]; };
   exomePeak = derive2 { name="exomePeak"; version="2.15.0"; sha256="1xyx8c1sflf98fp2588cvwmpz7f4bji6mwaw0297cj7h4893nb2a"; depends=[GenomicAlignments GenomicFeatures Rsamtools rtracklayer]; };
   explorase = derive2 { name="explorase"; version="1.45.0"; sha256="18cch1m5k8sr9fjgfqv6ya2miwin89viq7sigpdv15r0xiz1js77"; depends=[limma rggobi RGtk2]; };
-  fCCAC = derive2 { name="fCCAC"; version="1.7.1"; sha256="1cpma76xn4ddqyjsyhlgwa812v4p2kkby77diyy7gxha843ylncl"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; };
-  fCI = derive2 { name="fCI"; version="1.11.0"; sha256="0h94ivm66d3cnrf0cnrymq3b4a2v5jg38ylv8wylnidj5g98czap"; depends=[FNN gtools psych rgl VennDiagram zoo]; };
+  fCCAC = derive2 { name="fCCAC"; version="1.7.2"; sha256="18hbjv0c53mr9751h27b1spn1kc47wvbkh0p35y68akjk815gfrw"; depends=[ComplexHeatmap fda genomation GenomicRanges ggplot2 IRanges RColorBrewer S4Vectors]; };
+  fCI = derive2 { name="fCI"; version="1.11.1"; sha256="0b9n1vigqd7hvyqpgdaqdpz1iqmng2xl3zkgbasqyq71crcfchwv"; depends=[FNN gtools psych rgl VennDiagram zoo]; };
   fabia = derive2 { name="fabia"; version="2.27.0"; sha256="0lp2h8px9f4czvld93v1cpra31375qwvyfaq336jc7ib2myvdclz"; depends=[Biobase]; };
   factDesign = derive2 { name="factDesign"; version="1.57.0"; sha256="1kf98xygnq5pwjl7ak5jasrkgnrqhzpb81gljgsc0xp3a1mj37gn"; depends=[Biobase]; };
   farms = derive2 { name="farms"; version="1.33.0"; sha256="1xbndc128m1f5jv8firhgsbgyqvwrxma22182p5axxjf5qwymnl9"; depends=[affy Biobase MASS]; };
@@ -997,159 +1070,166 @@ in with self; {
   fgsea = derive2 { name="fgsea"; version="1.7.1"; sha256="1aiiqc3jbanlxa6q3inqzj1h81dpar2i05bmaja38k7inciaysa0"; depends=[BiocParallel data_table fastmatch ggplot2 gridExtra Matrix Rcpp]; };
   flagme = derive2 { name="flagme"; version="1.37.0"; sha256="0pjyi90l7k2i7bm93p9yyvrx18jmwcg0gaj2wixa0inyx9w5bymc"; depends=[CAMERA gcspikelite gplots MASS SparseM xcms]; };
   flipflop = derive2 { name="flipflop"; version="1.19.0"; sha256="0283bks3jbscnvyj51jm3z47rvdpfmaj40bc2h1ck8md82jrhiqj"; depends=[GenomicRanges IRanges Matrix]; };
-  flowAI = derive2 { name="flowAI"; version="1.9.1"; sha256="1j2a7aivy54vlf9vhk2d12wfzr3jdqq6582wd7pi2sg5j15mbl7v"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; };
+  flowAI = derive2 { name="flowAI"; version="1.11.3"; sha256="1ha80s8w2mcy72r2h6kj5sq0qrwkan4vzxpy2lf9frbpxrdkw696"; depends=[changepoint flowCore ggplot2 knitr plyr RColorBrewer reshape2 rmarkdown scales]; };
   flowBeads = derive2 { name="flowBeads"; version="1.19.0"; sha256="16h0jd88nada5lsaxl7q1m3nqf7gzqc1hw9cv5q96qa8n13a50la"; depends=[Biobase flowCore knitr rrcov xtable]; };
   flowBin = derive2 { name="flowBin"; version="1.17.0"; sha256="0axib7fny5n1h0fcisy2ll67m1illv41swwi1xdc37d2v605c6jk"; depends=[BiocGenerics class flowCore flowFP limma snow]; };
   flowCHIC = derive2 { name="flowCHIC"; version="1.15.0"; sha256="1qsa6lkdang9x44wva0dwkgvv4kxqadk3jvjkg0q59bdf137irrs"; depends=[EBImage flowCore ggplot2 hexbin vegan]; };
-  flowCL = derive2 { name="flowCL"; version="1.19.1"; sha256="1fwa5r4hxnfya5ylzgx61nakfalsc0ahvy3da4xj78l52w17bjah"; depends=[graph Rgraphviz SPARQL]; };
+  flowCL = derive2 { name="flowCL"; version="1.19.3"; sha256="0rp3lrxk3sdwjv939kjkc246pwifidn6bvm6lk115yqa03ymii3w"; depends=[graph Rgraphviz SPARQL]; };
   flowClean = derive2 { name="flowClean"; version="1.19.0"; sha256="091d79vx5w76xhhjm1zvjfyfv9pn4ni91a85yq2ca4laplsd0nqn"; depends=[bit changepoint flowCore sfsmisc]; };
-  flowClust = derive2 { name="flowClust"; version="3.19.0"; sha256="1wkxfk1962cxwax2giyzva771rjxjcjy70vd9lsi7qkkxy5r3fdy"; depends=[Biobase BiocGenerics clue ellipse flowCore flowViz graph MCMCpack mnormt RBGL]; };
-  flowCore = derive2 { name="flowCore"; version="1.47.3"; sha256="0dp0aks75xzihg1nbyh441v76pgl3ikznzg1csswlzsnll4s6gdv"; depends=[BH Biobase BiocGenerics corpcor graph matrixStats Rcpp rrcov]; };
+  flowClust = derive2 { name="flowClust"; version="3.19.1"; sha256="0sdssv5bingj6zs0jp0ddfckkmbx3kljhh7snv74b0k0f3lndg4h"; depends=[Biobase BiocGenerics clue corpcor ellipse flowCore flowViz graph mnormt]; };
+  flowCore = derive2 { name="flowCore"; version="1.47.9"; sha256="03wzl92yv5zg4rgbffd07lzb69xk3flf1fg640b8kw6527wbgfkz"; depends=[BH Biobase BiocGenerics corpcor graph MASS matrixStats Rcpp rrcov]; };
   flowCyBar = derive2 { name="flowCyBar"; version="1.17.0"; sha256="1c3a12slk8z8y1vr8j09p2k5h2pw697ysk0a74p6n20sfl1zd3h9"; depends=[gplots vegan]; };
-  flowDensity = derive2 { name="flowDensity"; version="1.15.0"; sha256="0ppvvcd9brm1xqrlz7cdj35knylahqyafaabm4b7qdnwf0nz578x"; depends=[car flowCore flowWorkspace gplots RFOC rgeos sp]; };
+  flowDensity = derive2 { name="flowDensity"; version="1.15.2"; sha256="1qadx0lxvk74rapgmibp9fix19zdyg3illgl7qfnzkkadbjc1bbw"; depends=[car flowCore flowWorkspace gplots RFOC rgeos sp]; };
   flowFP = derive2 { name="flowFP"; version="1.39.0"; sha256="02n85dv2qvxzwdi44mc7awvxc26nbwpbzawb0ikjv8gwf4www9ch"; depends=[Biobase BiocGenerics flowCore flowViz]; };
-  flowFit = derive2 { name="flowFit"; version="1.19.0"; sha256="0ydpczklwaf0lr1vhz0fcp9qi29gc0hbn8l4qnfa4l7r2s3md418"; depends=[flowCore flowViz gplots kza minpack_lm]; };
-  flowMap = derive2 { name="flowMap"; version="1.19.0"; sha256="1viidnbhw054q1vl4d6xqsz1h1y764w1jsjs9nqgfnpxqmrlgls2"; depends=[abind ade4 doParallel Matrix reshape2 scales]; };
-  flowMatch = derive2 { name="flowMatch"; version="1.17.0"; sha256="0b1da6sfaykwj0dk4hbrj71q209jyarl0x40i5n324nj8r4ja7hz"; depends=[Biobase flowCore Rcpp]; };
+  flowFit = derive2 { name="flowFit"; version="1.19.1"; sha256="0v7qdrskm47d2j16gag2lv63051hz182l7j5j2m36jh1fbddwhz6"; depends=[flowCore flowViz gplots kza minpack_lm]; };
+  flowMap = derive2 { name="flowMap"; version="1.19.1"; sha256="1q3gvb4q2d3lh8828hlnxdrqzlsfm4chl5rvf99nbmapazz37r7g"; depends=[abind ade4 doParallel Matrix reshape2 scales]; };
+  flowMatch = derive2 { name="flowMatch"; version="1.17.1"; sha256="0ymvn6nyxp95yb23y6lr0ks297m1djqaisz34wssxqk524zjrgbr"; depends=[Biobase flowCore Rcpp]; };
   flowMeans = derive2 { name="flowMeans"; version="1.41.0"; sha256="1ixzwry1435w20w40z87yhscbgskbldqmrz0x7nqvlqp5yn1ax71"; depends=[Biobase feature flowCore rrcov]; };
   flowMerge = derive2 { name="flowMerge"; version="2.29.0"; sha256="0imabypbjyn83jyb3isichi7fy4p4nkmsphcqbkimpjrfgc391kw"; depends=[feature flowClust flowCore foreach graph Rgraphviz rrcov snow]; };
-  flowPeaks = derive2 { name="flowPeaks"; version="1.27.0"; sha256="12fw6vp5lar9y8k2hx8pjnr2km5bs1rjgdam3ifrfdj0rgicf6rk"; depends=[]; };
-  flowPloidy = derive2 { name="flowPloidy"; version="1.7.0"; sha256="06lwd20c97lq5b9z11agvi4d9h601pxgzsi3xzkqp3q8c7xnpa1a"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; };
+  flowPeaks = derive2 { name="flowPeaks"; version="1.27.1"; sha256="07r0l4iyc9jrraswmd0j2lzrjw2ch7wkfniisr148k3a6gvhl0wq"; depends=[]; };
+  flowPloidy = derive2 { name="flowPloidy"; version="1.7.3"; sha256="1m7vr6z9ca04xk876s9mc36hjr1wd9bb3kgx1hi7zd1aazzis1rb"; depends=[car caTools flowCore knitr minpack_lm rmarkdown shiny]; };
   flowPlots = derive2 { name="flowPlots"; version="1.29.0"; sha256="0ylxkvhzghzybsi20lpprz430sl2d6mnrkbwp8bbsysr2ymsjml6"; depends=[]; };
-  flowQ = derive2 { name="flowQ"; version="1.41.0"; sha256="0290mk6zj2f2y4qiks9z9lnrl87fa0024idmdcf7slwlngf59mfd"; depends=[BiocGenerics bioDist flowCore flowViz geneplotter IRanges lattice latticeExtra mvoutlier outliers parody RColorBrewer]; };
+  flowQ = derive2 { name="flowQ"; version="1.41.1"; sha256="15n2w9958hp3w0rigx80p2gj5l4bg8zycv8h2l31ysdg34lij5r7"; depends=[BiocGenerics bioDist flowCore flowViz geneplotter IRanges lattice latticeExtra mvoutlier outliers parody RColorBrewer]; };
   flowQB = derive2 { name="flowQB"; version="2.9.0"; sha256="0d4n8qxja851z4d7ran9wr4rhfa64mnkhz7rqwa0vggrq1y0ksja"; depends=[extremevalues flowCore]; };
-  flowStats = derive2 { name="flowStats"; version="3.39.0"; sha256="1bz0saqkxznyq9ilabi1j4nwd18yk1p740asj7zlirqhiik2x20m"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow]; };
+  flowStats = derive2 { name="flowStats"; version="3.39.4"; sha256="1cj7dwvqa9x3lxblfvxmsl88zc91fbjhh1viy3s2m88kxl6517vr"; depends=[Biobase BiocGenerics cluster fda flowCore flowViz flowWorkspace KernSmooth ks lattice MASS ncdfFlow RColorBrewer]; };
   flowTime = derive2 { name="flowTime"; version="1.5.0"; sha256="0qh2p696xh8xsi0j7d6s75kbf8ajm4virfs8c6c1rn48n4grhlpy"; depends=[flowCore plyr]; };
   flowTrans = derive2 { name="flowTrans"; version="1.33.0"; sha256="1fqw49s9dgz4khq3m73bf8f7vy9xzhdl91n0rkmcnwq7kd6wm5n9"; depends=[flowClust flowCore flowViz]; };
   flowType = derive2 { name="flowType"; version="2.19.0"; sha256="1313ak0n79pvhzpckrapbkzrzxhd8qnxawpvagm92lsdg5p79mfc"; depends=[BH Biobase flowClust flowCore flowMeans flowMerge Rcpp rrcov sfsmisc]; };
-  flowUtils = derive2 { name="flowUtils"; version="1.45.0"; sha256="1vrbyzhifqaf47a73hac75s4dnsg6fys3nhhl1rf81hsjhqh7q80"; depends=[Biobase corpcor flowCore graph RUnit XML]; };
+  flowUtils = derive2 { name="flowUtils"; version="1.45.2"; sha256="1x6ng8wvwqhq76r3wm62xyi29dq0086yvklv2ddv2gfc7ifzk8nl"; depends=[Biobase corpcor flowCore graph RUnit XML]; };
   flowVS = derive2 { name="flowVS"; version="1.13.0"; sha256="16r8ig33ym1d8hp2hvxnlszifc0qpmd4vnqzg1nn31a4j3xf575r"; depends=[flowCore flowStats flowViz]; };
   flowViz = derive2 { name="flowViz"; version="1.45.0"; sha256="076hjz0mvc7pygmlrapsgg6scsxkzd714yg4wq8r8fbbpblqhkxf"; depends=[Biobase flowCore hexbin IDPmisc KernSmooth lattice latticeExtra MASS RColorBrewer]; };
-  flowWorkspace = derive2 { name="flowWorkspace"; version="3.29.4"; sha256="1669sl43r31ikj5mjzgmlynls994607xg0x2rz1y1dxcy84rb9vc"; depends=[BH Biobase BiocGenerics cytolib data_table dplyr flowCore flowViz graph gridExtra lattice latticeExtra matrixStats ncdfFlow RBGL RColorBrewer Rcpp Rgraphviz RProtoBufLib scales stringr XML]; };
-  flowcatchR = derive2 { name="flowcatchR"; version="1.15.0"; sha256="0m1wbddxi2sifhpil00gd9vr27i75h30cw3a2m59hccxw4di139j"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; };
-  fmcsR = derive2 { name="fmcsR"; version="1.23.0"; sha256="1m8v98qi3x2cwr74ynndb0ilw8m8n0dz7w7fpyv0fm3s0vy3x0rx"; depends=[BiocGenerics ChemmineR RUnit]; };
+  flowWorkspace = derive2 { name="flowWorkspace"; version="3.29.10"; sha256="0qch9hbpxqwma1kg9jrmnyf7d9zc714pjybpzphkgx9c9cdbaqzy"; depends=[BH Biobase BiocGenerics cytolib data_table dplyr flowCore flowViz graph gridExtra lattice latticeExtra matrixStats ncdfFlow RBGL RColorBrewer Rcpp Rgraphviz RProtoBufLib scales stringr XML]; };
+  flowcatchR = derive2 { name="flowcatchR"; version="1.15.3"; sha256="04njcbq0bi53pwkfrf489l3fws63w9l981cf4iadkadbk5dl2hav"; depends=[abind BiocParallel colorRamps EBImage plotly shiny]; };
+  fmcsR = derive2 { name="fmcsR"; version="1.23.3"; sha256="1f2la9cx08yd3y96n2hkc6dzqvj5kya58rghr711axjmjfcigw2y"; depends=[BiocGenerics ChemmineR RUnit]; };
   focalCall = derive2 { name="focalCall"; version="1.15.0"; sha256="1vnihlpxaplnjp7h9n3k3py0103qz98dnkm1p7hns93pf185ih05"; depends=[CGHcall]; };
   frma = derive2 { name="frma"; version="1.33.0"; sha256="02n251fwg34f0mkvingrsv1n0v77cvmpmd44rs1a4qyl5nj3x9v6"; depends=[affy Biobase BiocGenerics DBI MASS oligo oligoClasses preprocessCore]; };
   frmaTools = derive2 { name="frmaTools"; version="1.33.0"; sha256="1w62s3i6q92ka44dy8sqid21fgpjjghmnyavj3swx5czpn476vny"; depends=[affy Biobase DBI preprocessCore]; };
-  funtooNorm = derive2 { name="funtooNorm"; version="1.5.0"; sha256="175np47a1n3l9dkpfza9wdndxk3adk9np87c8hi4ybhjbx9w8bj5"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; };
+  funtooNorm = derive2 { name="funtooNorm"; version="1.5.1"; sha256="0pqh1hiblr6989wvdx7fmxkkj451xijjj6z9jgqz2c08qpk2d4h8"; depends=[GenomeInfoDb IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest matrixStats minfi pls]; };
   gCMAP = derive2 { name="gCMAP"; version="1.25.0"; sha256="0mp0cg33slfpnqzk2fsggpb3dfgq95isj42lia0i3hkwkdfcisly"; depends=[annotate AnnotationDbi bigmemory bigmemoryExtras Biobase Category DESeq genefilter GSEABase GSEAlm limma Matrix]; };
   gCMAPWeb = derive2 { name="gCMAPWeb"; version="1.21.0"; sha256="15fmiii9kkiy1p9d2h7hg9fi3kacifz6113hpkzkk0lic4phncg5"; depends=[annotate AnnotationDbi Biobase BiocGenerics brew gCMAP GSEABase hwriter Rook yaml]; };
-  gCrisprTools = derive2 { name="gCrisprTools"; version="1.9.1"; sha256="1nscfxbyvy596sak9lj5g1wcbk7zprgy5654bbv69ain9p1i3kzc"; depends=[Biobase ggplot2 limma PANTHER_db rmarkdown RobustRankAggreg]; };
+  gCrisprTools = derive2 { name="gCrisprTools"; version="1.9.3"; sha256="1msp2xfd3h1bj04abad714r9rmgbr9w6g26lj7s8j451jjlw57na"; depends=[Biobase ggplot2 limma PANTHER_db rmarkdown RobustRankAggreg]; };
   gQTLBase = derive2 { name="gQTLBase"; version="1.13.0"; sha256="0rszhclakgc0xyg8jdb9mxgwaqcb28rcs9pyrg31d0wxi44c90w2"; depends=[BatchJobs BBmisc BiocGenerics bit doParallel ff ffbase foreach GenomicFiles GenomicRanges rtracklayer S4Vectors SummarizedExperiment]; };
+  gQTLstats = derive2 { name="gQTLstats"; version="1.13.1"; sha256="0apicd22s2yx57ypqvnmxkh3ca06r5cq3mj7x3hz57z9sv99bq1w"; depends=[AnnotationDbi BatchJobs BBmisc beeswarm Biobase BiocGenerics doParallel dplyr erma ffbase foreach GenomeInfoDb GenomicFeatures GenomicFiles GenomicRanges ggbeeswarm ggplot2 gQTLBase HardyWeinberg Homo_sapiens IRanges limma mgcv plotly reshape2 S4Vectors shiny snpStats SummarizedExperiment VariantAnnotation]; };
   gaga = derive2 { name="gaga"; version="2.27.0"; sha256="09q5xfki8nnp5z4ia0l07pnvsmiwag7ahr1bxbic9aajql873ipk"; depends=[Biobase coda EBarrays mgcv]; };
-  gage = derive2 { name="gage"; version="2.31.0"; sha256="1lkq0xq7qz8vzd0y996c8yskh8wkm15hqs68krbs9z08scwjzpqg"; depends=[AnnotationDbi graph KEGGREST]; };
+  gage = derive2 { name="gage"; version="2.31.2"; sha256="0m4mp78g3sxa19rkw9p4d6sxw1ic9km6z5hir8d1lqg0hmv9y2ki"; depends=[AnnotationDbi graph KEGGREST]; };
   gaggle = derive2 { name="gaggle"; version="1.49.0"; sha256="0bi19b9ndccrky2i89scjzgna5b2gj0p74licynn8pm1jfwla584"; depends=[graph rJava RUnit]; };
-  gaia = derive2 { name="gaia"; version="2.25.0"; sha256="009lclb7dvy1mgxzxmp8nywcbq0jdq26qdla0vl7jb8p8vjp5k1c"; depends=[]; };
-  garfield = derive2 { name="garfield"; version="1.9.0"; sha256="1pndkw2an642ldgz0lw07l70gybj5npfs9w8qi2wm77fqfih8lj0"; depends=[]; };
-  gcapc = derive2 { name="gcapc"; version="1.5.0"; sha256="196fi5c1bhaq7qfxvw8jfbfahjygk1a6ykkjlrbqkhk60lzk9gbl"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; };
+  gaia = derive2 { name="gaia"; version="2.25.3"; sha256="10qcjcfqiwa2xcgh2jpiq5hp8i8ihbl4nz503ndcz3j54rw3pjfn"; depends=[]; };
+  garfield = derive2 { name="garfield"; version="1.9.1"; sha256="1fj196imnr9vb8pg6rxf46n5yw7v3g1w0q8h49psrvw7zrmzknsg"; depends=[]; };
+  gcapc = derive2 { name="gcapc"; version="1.5.1"; sha256="1fk3vqxl6xpf4xhmacsn3ywwixs1brm24pfyshlbwp27rwj3jpzw"; depends=[BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS matrixStats Rsamtools S4Vectors]; };
   gcatest = derive2 { name="gcatest"; version="1.11.0"; sha256="0x0k557fydigj81610a39b8hg973wbjsfj0ailpjfa1grp77csa1"; depends=[lfa]; };
-  gcrma = derive2 { name="gcrma"; version="2.53.0"; sha256="14gcna1sagqizaryq5hv5907hw7agds8v0s2n1hd8k1yrpayhkwc"; depends=[affy affyio Biobase BiocInstaller Biostrings XVector]; };
-  gdsfmt = derive2 { name="gdsfmt"; version="1.17.2"; sha256="13rkbhjis5fjzalj03bpckq4w177c6v2m4p7743yvjhqhyyah9pq"; depends=[]; };
-  geNetClassifier = derive2 { name="geNetClassifier"; version="1.21.0"; sha256="0ikpsmjwbiq8kidyvllx51ih0b7jnw9s1nz6z6hfz21zf98kz9p6"; depends=[Biobase e1071 EBarrays minet]; };
+  gcrma = derive2 { name="gcrma"; version="2.53.1"; sha256="0qlvr4lgkddyrdvf81z60zzlbq0x7abdlgsgw1xr1xabmp7wbkrs"; depends=[affy affyio Biobase BiocManager Biostrings XVector]; };
+  gdsfmt = derive2 { name="gdsfmt"; version="1.17.6"; sha256="0x44n0qrcq82kxd8w1zlbfsgmf2yxxnf1i5h9z7ajlcz46cwgaxn"; depends=[]; };
+  geNetClassifier = derive2 { name="geNetClassifier"; version="1.21.1"; sha256="0fjkm6bg4g2qr5xyjjyhrpm9iijhmgy6rwd38iwimlq3qqgnm819"; depends=[Biobase e1071 EBarrays minet]; };
   geecc = derive2 { name="geecc"; version="1.15.0"; sha256="0wfa0a4hlwvjsjvxk7m6lgjxjvph3392a4kskg2y1vphh916qnxr"; depends=[gplots hypergea MASS Rcpp]; };
   genArise = derive2 { name="genArise"; version="1.57.0"; sha256="08hrc2y06prmacdzrd3qnlbyzrr9127jgglq7babrnhw0dffjl96"; depends=[locfit tkrplot xtable]; };
-  genbankr = derive2 { name="genbankr"; version="1.9.0"; sha256="0nzbf189w2rg9hy7h7qcw3jpz9lhl2yq57rhps29lgmizgdml8qp"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; };
+  genbankr = derive2 { name="genbankr"; version="1.9.2"; sha256="1ba891irw0carh6pg2r6v50g5g7am1k09zyw450rz878sfka50cj"; depends=[Biobase BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges IRanges rtracklayer S4Vectors VariantAnnotation]; };
   geneAttribution = derive2 { name="geneAttribution"; version="1.7.0"; sha256="1snpd1xy66kaj2mb8xjasgm3bipydxbrbcpvp5bny9shvk6di0cf"; depends=[BiocGenerics GenomeInfoDb GenomicFeatures GenomicRanges IRanges org_Hs_eg_db rtracklayer]; };
   geneClassifiers = derive2 { name="geneClassifiers"; version="1.5.0"; sha256="0qwqb1sq6bw688br5c5lxvc7dxwg1qwwb30dn9pklgfgpnjwp86n"; depends=[Biobase BiocGenerics]; };
   geneRecommender = derive2 { name="geneRecommender"; version="1.53.0"; sha256="1qrlk46y1hkgva2yrf8x2smy82p4kmzjpr7kyk9381rfl64nn18q"; depends=[Biobase]; };
   geneRxCluster = derive2 { name="geneRxCluster"; version="1.17.0"; sha256="0vlhskyymdnbigdq1qj9gimklcmzvybh74zn7f65if5ssqdgmj10"; depends=[GenomicRanges IRanges]; };
-  geneXtendeR = derive2 { name="geneXtendeR"; version="1.7.0"; sha256="0j3k3ijq7ml52avs6np7q5137fr348xi5012dkw1nmn4sqm9dwpy"; depends=[AnnotationDbi data_table dplyr GO_db networkD3 org_Ag_eg_db org_Bt_eg_db org_Ce_eg_db org_Cf_eg_db org_Dm_eg_db org_Dr_eg_db org_Gg_eg_db org_Hs_eg_db org_Mm_eg_db org_Mmu_eg_db org_Pt_eg_db org_Rn_eg_db org_Sc_sgd_db org_Ss_eg_db org_Xl_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; };
-  genefilter = derive2 { name="genefilter"; version="1.63.0"; sha256="0wn6gwj8v3xl11mhx40529hlssay79n24vn071saq2y475bxhgkl"; depends=[annotate AnnotationDbi Biobase S4Vectors survival]; };
-  genefu = derive2 { name="genefu"; version="2.13.0"; sha256="1i0w1bhg93gpjwn2w2k9kz3z99vdifdf7a9nza8d79lirj4512p4"; depends=[AIMS amap biomaRt iC10 limma mclust survcomp]; };
-  geneplast = derive2 { name="geneplast"; version="1.7.0"; sha256="1ydcahw9imi281xdgpr7asihavsks3jjh52nhdrx0qn5plml254r"; depends=[ape igraph snow]; };
+  geneXtendeR = derive2 { name="geneXtendeR"; version="1.7.11"; sha256="1kws224q6rhzmdrgfv2695l5aah3hz6r5vacwl5akg2bja2v42yv"; depends=[AnnotationDbi BiocStyle data_table dplyr GO_db networkD3 org_Rn_eg_db RColorBrewer rtracklayer SnowballC tm wordcloud]; };
+  genefilter = derive2 { name="genefilter"; version="1.63.2"; sha256="0kx0fv9gjknffhvgz65y36hxcfi25rii6m35caxdrkcfm3cnrc6l"; depends=[annotate AnnotationDbi Biobase S4Vectors survival]; };
+  genefu = derive2 { name="genefu"; version="2.13.1"; sha256="0b1xrxfp1swfsvvrr1nkkkmjjb6bxbjhvvm2fl2463mmgy3qdsn6"; depends=[AIMS amap biomaRt iC10 limma mclust survcomp]; };
+  geneplast = derive2 { name="geneplast"; version="1.7.2"; sha256="18g39wzkcnkpp4v2fwbh3ff84b8fcwfn723hpfyla7857qjm6krp"; depends=[ape igraph snow]; };
   geneplotter = derive2 { name="geneplotter"; version="1.59.0"; sha256="1yqxqxchjn31sqw3csk5y3jmshb3v5580q245skam5r5v2nw5lhb"; depends=[annotate AnnotationDbi Biobase BiocGenerics lattice RColorBrewer]; };
   genoCN = derive2 { name="genoCN"; version="1.33.0"; sha256="1rcly2dfm93lbsc1inm3z669l19k213zyq31kb4kkg1cnam2cflv"; depends=[]; };
-  genomation = derive2 { name="genomation"; version="1.13.0"; sha256="04101y44lnxlxkyhb2gb4d0wr9cy1s1c31dsfhqgl1rhy8rxi5b4"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer RUnit S4Vectors seqPattern]; };
+  genomation = derive2 { name="genomation"; version="1.13.1"; sha256="038fnkv0m2r47mm2cg2fmrzq776j0jfskppi7p0872rx59r0vl6y"; depends=[Biostrings BSgenome data_table GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridBase impute IRanges matrixStats plotrix plyr Rcpp readr reshape2 Rsamtools rtracklayer RUnit S4Vectors seqPattern]; };
   genomeIntervals = derive2 { name="genomeIntervals"; version="1.37.0"; sha256="1xinqj7zzwjxx6qxi6mxrws2ajjm8cy7g9v1773x7mh47w9rz7mw"; depends=[BiocGenerics GenomeInfoDb GenomicRanges intervals IRanges S4Vectors]; };
   genomes = derive2 { name="genomes"; version="3.11.0"; sha256="0vvc43ih4idj6jakm4jvwynvi4v90nndvbz18kb7nxb7fh1bl9m3"; depends=[curl readr]; };
   genoset = derive2 { name="genoset"; version="1.37.0"; sha256="0awbbvhz1qzra92ghal5wrqrkya4v0wd15q75dmqxb5xx36s8if6"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges S4Vectors SummarizedExperiment]; };
-  genotypeeval = derive2 { name="genotypeeval"; version="1.13.1"; sha256="0qlzqfzpb74prq6b7zg77d610i8hj0d2f7jhi4l1difcgf8y7j2j"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; };
-  genphen = derive2 { name="genphen"; version="1.9.0"; sha256="1bps7mgznp5by1kfwmapnfj3vkdqiz3p3816kg9jmg7iggxn8gih"; depends=[Biostrings doParallel e1071 foreach ranger rstan]; };
+  genotypeeval = derive2 { name="genotypeeval"; version="1.13.2"; sha256="10zz9jd1xsk09gh3mkm23jmqi4j5kv7d5fbjwlr2bxq4z2yjl8h4"; depends=[BiocGenerics BiocParallel GenomeInfoDb GenomicRanges ggplot2 IRanges rtracklayer VariantAnnotation]; };
+  genphen = derive2 { name="genphen"; version="1.9.49"; sha256="0mdr79x7a036rrjdh1aqxnxskgsvvjbzyvlgcrf9jxh2yf45ciq1"; depends=[Biostrings doParallel e1071 foreach ranger rstan]; };
   gep2pep = derive2 { name="gep2pep"; version="1.1.1"; sha256="0h6qf7fl2hmg5chv6g9qfj5ih4mfc6xmihqny9pzg277i5gwmdsj"; depends=[Biobase digest foreach GSEABase iterators repo rhdf5 XML]; };
   gespeR = derive2 { name="gespeR"; version="1.13.0"; sha256="1qc9d8vp5s5rzw7bqbfm2n5l23yfk9d3kpmhyd4hnr9jb2h4jypp"; depends=[Biobase biomaRt cellHTS2 doParallel dplyr foreach ggplot2 glmnet Matrix reshape2]; };
-  ggbio = derive2 { name="ggbio"; version="1.29.0"; sha256="0skf5m8qglvv2y70jppjblvpl94cgimns02kprsqp85ghmbshy7s"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; };
-  ggcyto = derive2 { name="ggcyto"; version="1.9.10"; sha256="17pvxml685gic39ycgq2crwnznw7ih0g5bhynxziffnfg0zqb6fc"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra ncdfFlow plyr RColorBrewer scales]; };
-  ggtree = derive2 { name="ggtree"; version="1.13.0"; sha256="1zkaasmb2y1k8hqjr7cbvhasmv1ykclhfqj3h0s6m6yvh2iql9nb"; depends=[ape dplyr ggplot2 magrittr purrr rlang rvcheck scales tibble tidyr tidytree treeio]; };
-  girafe = derive2 { name="girafe"; version="1.33.0"; sha256="0jdckfnsfvcqf7gnfbpxw12q0la9cxzfmhhy4n492fqavnzpbfgj"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; };
-  globalSeq = derive2 { name="globalSeq"; version="1.9.1"; sha256="105sxbs03xdfv6ikl517sj14wzn0cc92lxv5yfzabj2ys8911dl1"; depends=[]; };
-  globaltest = derive2 { name="globaltest"; version="5.35.0"; sha256="150mf64cr528jzcpc9ydfs1kf9dwrr8xnw47abpkxgmfmqi6jl01"; depends=[annotate AnnotationDbi Biobase survival]; };
-  gmapR = derive2 { name="gmapR"; version="1.23.0"; sha256="0c6chbf3kzx3z57gs36b0bi1bc58514sklxkplv80z7xnvxs8pl9"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; };
+  ggbio = derive2 { name="ggbio"; version="1.29.5"; sha256="1aqj3m7jkjdzwvnk8il74v05gybd3n6b056mlwq8slmmpyngjnc6"; depends=[AnnotationDbi AnnotationFilter Biobase BiocGenerics Biostrings biovizBase BSgenome ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges GGally ggplot2 gridExtra gtable Hmisc IRanges OrganismDbi reshape2 rlang Rsamtools rtracklayer S4Vectors scales SummarizedExperiment VariantAnnotation]; };
+  ggcyto = derive2 { name="ggcyto"; version="1.9.13"; sha256="0dhwv19dny4490jg2p7bbmzqnpyf04zms33vwssaf7xwy7i8h0q9"; depends=[data_table flowCore flowWorkspace ggplot2 gridExtra ncdfFlow plyr RColorBrewer rlang scales]; };
+  ggtree = derive2 { name="ggtree"; version="1.13.6"; sha256="0hbw03ixzvmiqgacvi41mb8kjnh7s78z39900b532qd1ghmg8xrq"; depends=[ape dplyr ggplot2 magrittr purrr rlang rvcheck scales tibble tidyr tidytree treeio]; };
+  girafe = derive2 { name="girafe"; version="1.33.2"; sha256="1b7sqnbj3a6p8zdaf8w7s19fijiw5ciqchxsi8i7ali46fqvqhbs"; depends=[Biobase BiocGenerics Biostrings genomeIntervals intervals IRanges Rsamtools S4Vectors ShortRead]; };
+  glmSparseNet = derive2 { name="glmSparseNet"; version="0.99.36"; sha256="1qhjrpd70qfizkk64kl4spwwq8gjk7zg6ypj5gyk6pn98myvk2bm"; depends=[biomaRt dplyr forcats futile_logger ggplot2 glmnet loose_rock Matrix MultiAssayExperiment readr reshape2 rlang sparsebn sparsebnUtils STRINGdb stringr SummarizedExperiment survminer]; };
+  globalSeq = derive2 { name="globalSeq"; version="1.9.4"; sha256="146zfaz0w3gdic5q50vqzynr6gzv6b0c417yi1x350ir3qn2vczk"; depends=[]; };
+  globaltest = derive2 { name="globaltest"; version="5.35.1"; sha256="0q72cvh11qffkr6c17pz7a5d2wi2csk37pq9fjda11mmx1g01paq"; depends=[annotate AnnotationDbi Biobase survival]; };
+  gmapR = derive2 { name="gmapR"; version="1.23.1"; sha256="0qyn39vcp7a84xjn7n4cyhk47yw9yxn9mwq81kz3fjljafy2pv9z"; depends=[Biobase BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges IRanges Rsamtools rtracklayer S4Vectors VariantAnnotation]; };
   goProfiles = derive2 { name="goProfiles"; version="1.43.0"; sha256="19r3h8rnfs826aldlgkjgsllk4wj95rq7lq37qd927bjgvi4kbnj"; depends=[AnnotationDbi Biobase CompQuadForm GO_db stringr]; };
-  goSTAG = derive2 { name="goSTAG"; version="1.5.0"; sha256="13bnzz3adj9186sp992fbjp9442nvp7f0a80jnz1nygdr0d45i7m"; depends=[AnnotationDbi biomaRt GO_db memoise]; };
+  goSTAG = derive2 { name="goSTAG"; version="1.5.1"; sha256="1nazixjbh90460iqc7hgsgsilzaknjym639c5mmxcxdas96vmry1"; depends=[AnnotationDbi biomaRt GO_db memoise]; };
   goTools = derive2 { name="goTools"; version="1.55.0"; sha256="1lzgsdqvwrxckg5pdbmnxldifrsm7zyvl72pl3sz8x2997b4lc97"; depends=[AnnotationDbi GO_db]; };
   goseq = derive2 { name="goseq"; version="1.33.0"; sha256="102w1cxz2ab0gyzamy9rcdbf73bgkvqrm0lxasz6m2h79j9gfmc9"; depends=[AnnotationDbi BiasedUrn BiocGenerics geneLenDataBase GO_db mgcv]; };
+  gpart = derive2 { name="gpart"; version="0.99.19"; sha256="05nzlyn7n1a73qdrg8wrwjwcix4i7y43g6bycbfw07zxps8a3472"; depends=[AnnotationDbi biomaRt data_table GenomicRanges Homo_sapiens igraph IRanges OrganismDbi Rcpp TxDb_Hsapiens_UCSC_hg38_knownGene]; };
   gpls = derive2 { name="gpls"; version="1.53.0"; sha256="02yca8lllmq7lmbg55kn3yhsb0s9d2b828aj08lsp5hxmyill36k"; depends=[]; };
-  gprege = derive2 { name="gprege"; version="1.25.0"; sha256="123ggwjdkc2la9vbv6kmv7l7pg0wz3jzk4q0df5zm38a3nr8gy7p"; depends=[gptk]; };
-  graph = derive2 { name="graph"; version="1.59.0"; sha256="1pcn9rr9j679g6hgsh235nar5via1rmgj1dqpyp7sl9zfjrcim2p"; depends=[BiocGenerics]; };
-  graphite = derive2 { name="graphite"; version="1.27.2"; sha256="0c3ha2hjpzwbrv5jh2376ayd2c7j9z857m70rx8xiv5bn3kzvazz"; depends=[AnnotationDbi checkmate graph httr rappdirs]; };
-  groHMM = derive2 { name="groHMM"; version="1.15.0"; sha256="1q18f8ibjwik01n54c373fss82jwamik430irgaya8q5b5659c0d"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; };
+  gprege = derive2 { name="gprege"; version="1.25.2"; sha256="0qlbvss2hk3f3bfi4k4jcpyqwishkxsqq9cv846cbnkryn1xnrih"; depends=[gptk]; };
+  graph = derive2 { name="graph"; version="1.59.2"; sha256="1vncpr60yl63kwlxdp1b15r81ymf28whzkkd9mz5r8f6jz184h0g"; depends=[BiocGenerics]; };
+  graphite = derive2 { name="graphite"; version="1.27.6"; sha256="009gjkmnjr8y6j8dz9h19bn16qkzhvknqazrdm4pf86pn8w2gy2w"; depends=[AnnotationDbi checkmate graph httr rappdirs]; };
+  groHMM = derive2 { name="groHMM"; version="1.15.1"; sha256="1a6c40bfsskh0adaqjvimn6bysfgz24lga9byznp2cf2757i9bps"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges MASS rtracklayer S4Vectors]; };
   gsean = derive2 { name="gsean"; version="1.1.0"; sha256="0aar598qdhppzkzrrmhzd1nkn7i3xci401yz3w5dsgz27fy12c18"; depends=[fgsea PPInfer]; };
-  gtrellis = derive2 { name="gtrellis"; version="1.13.1"; sha256="1nz1hq1nmn3759cnf7w2svkk7v6lzrp85l49vjwy7wfrpk612wch"; depends=[circlize GenomicRanges GetoptLong IRanges]; };
-  gwascat = derive2 { name="gwascat"; version="2.13.1"; sha256="1y595365q7hw84sgg6c307d3h1bryml4rxq1hg2vcr2ai0cbb065"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 graph Gviz Homo_sapiens IRanges Rsamtools rtracklayer S4Vectors snpStats SummarizedExperiment VariantAnnotation]; };
-  gwasurvivr = derive2 { name="gwasurvivr"; version="0.99.38"; sha256="0dcza6pscq9lndk3x1bc139fh3r61lwfrm88vizyaini7xyzd2p0"; depends=[GWASTools matrixStats SummarizedExperiment survival VariantAnnotation]; };
-  h5vc = derive2 { name="h5vc"; version="2.15.0"; sha256="001lz9pjr7ddlw8v69nvhmbdzzx643vd5akl7dzjx4z0kg3xyf55"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rsamtools S4Vectors]; };
+  gtrellis = derive2 { name="gtrellis"; version="1.13.3"; sha256="0pg30gnbmsn498isqw3g26a5pzxbq1k0hbz4sd986ak1whgac1q3"; depends=[circlize GenomicRanges GetoptLong IRanges]; };
+  gwascat = derive2 { name="gwascat"; version="2.13.5"; sha256="0p4l8skyyjblqzlcb13sj29sy6x62fakb5i56d757z6ic8pi84kx"; depends=[AnnotationDbi AnnotationHub BiocGenerics Biostrings GenomeInfoDb GenomicFeatures GenomicRanges ggbio ggplot2 gQTLstats graph Gviz Homo_sapiens IRanges Rsamtools rtracklayer S4Vectors snpStats SummarizedExperiment VariantAnnotation]; };
+  gwasurvivr = derive2 { name="gwasurvivr"; version="0.99.46"; sha256="137a4vclz7h462xf2aia47kaigz2gchlhxl6v7ycv4rq48i6qjrq"; depends=[GWASTools matrixStats SNPRelate SummarizedExperiment survival VariantAnnotation]; };
+  h5vc = derive2 { name="h5vc"; version="2.15.1"; sha256="1gfch3p8ylws4g22kd6xs79wsm6x65yfdaqxjhqp0cgsjlyrr29h"; depends=[abind BatchJobs BiocParallel Biostrings GenomeInfoDb GenomicRanges ggplot2 gridExtra h5vcData IRanges reshape rhdf5 Rsamtools S4Vectors]; };
   hapFabia = derive2 { name="hapFabia"; version="1.23.0"; sha256="0dhq26aqqmnzmx3cnwmmrqa8zx5gxq48is1wmljvfn86qixr70xr"; depends=[Biobase fabia]; };
   heatmaps = derive2 { name="heatmaps"; version="1.5.0"; sha256="0lz2cxw3fxyvnmnzk95k791x8x3vjn5cif2bqp3zv2rlkwgdjd7m"; depends=[BiocGenerics Biostrings EBImage GenomeInfoDb GenomicRanges IRanges KernSmooth Matrix plotrix RColorBrewer]; };
   hiAnnotator = derive2 { name="hiAnnotator"; version="1.15.0"; sha256="12q17c31j1q1jbh1z1ddlcml1wxin5s32yz9xk7dd7bxa81frpmg"; depends=[BSgenome dplyr foreach GenomicRanges ggplot2 iterators rtracklayer scales]; };
   hiReadsProcessor = derive2 { name="hiReadsProcessor"; version="1.17.0"; sha256="1qad1winpzjwjn9wnr7xvmspza2j0islsdqh7aig767svipw8870"; depends=[BiocGenerics BiocParallel Biostrings dplyr GenomicAlignments GenomicRanges hiAnnotator readxl rSFFreader sonicLength]; };
-  hicrep = derive2 { name="hicrep"; version="1.5.0"; sha256="17k4wynjjbailalm4h0gghw5fz7gavjpdzm3ibk1gih46l24fr0d"; depends=[]; };
+  hicrep = derive2 { name="hicrep"; version="1.5.1"; sha256="0vjif93dnjjqrd15gxflwlhncrr3sdrp3hw9944p4pmd1xq38i3i"; depends=[]; };
   hierGWAS = derive2 { name="hierGWAS"; version="1.11.0"; sha256="0wfv8pxnm8v1lwj1cbk4d7v0cyjzra8nm8gaawwr0aqcsg7ksp2f"; depends=[fastcluster fmsb glmnet]; };
-  hipathia = derive2 { name="hipathia"; version="1.1.1"; sha256="1x7aa8vbmzrfw5psyc4a7qcsnhfgcynfvp5k7qba4q5cp85gcgym"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; };
-  hmdbQuery = derive2 { name="hmdbQuery"; version="1.1.1"; sha256="1rkyh115mn65rq90i7g3idw1n856v3r6139rbvaai7939rbi4gg9"; depends=[S4Vectors XML]; };
+  hierinf = derive2 { name="hierinf"; version="0.99.3"; sha256="0rwwdwgx1p96vgfszp01i85wa56d9djkrjnzphgcv5962smd0wka"; depends=[fmsb glmnet]; };
+  hipathia = derive2 { name="hipathia"; version="1.1.3"; sha256="08yx1jpfz08zsldxvjsz9957rp1wk2744kb8248k5rwf4fmcdp4w"; depends=[AnnotationHub coin DelayedArray igraph limma matrixStats MultiAssayExperiment preprocessCore S4Vectors servr SummarizedExperiment]; };
+  hmdbQuery = derive2 { name="hmdbQuery"; version="1.1.3"; sha256="0gvbfiibnb3w588ri385wwyg1x3my7a3ay6sacbjhh0j6amx9g7p"; depends=[S4Vectors XML]; };
   hopach = derive2 { name="hopach"; version="2.41.0"; sha256="1i329clrw9bjxkchinadprix36xjak5x6i1zqpdj27kyr8w26gn2"; depends=[Biobase BiocGenerics cluster]; };
-  hpar = derive2 { name="hpar"; version="1.23.2"; sha256="04h4xfmappx0vipw1fa9kd8n9hs4cpcfsllxcrq77akndkf1dc92"; depends=[]; };
+  hpar = derive2 { name="hpar"; version="1.23.4"; sha256="0nf8w8qn63zrq2y5i5imrwv242cc884lzi92jldd24ainybp362h"; depends=[]; };
   htSeqTools = derive2 { name="htSeqTools"; version="1.29.5"; sha256="0rigcwd8mc3kjsj0kxzxnspzqz0d1i58vav71p7a4cx76yrzi5z1"; depends=[Biobase BiocGenerics BSgenome GenomeInfoDb GenomicRanges IRanges MASS S4Vectors]; };
   hyperdraw = derive2 { name="hyperdraw"; version="1.33.0"; sha256="0qcp9p3n7gxskvw8afz7yr2msm0gikl7v3dvzvrhfypad9czplx0"; depends=[graph hypergraph Rgraphviz]; };
   hypergraph = derive2 { name="hypergraph"; version="1.53.0"; sha256="1mj14bgkbs3p0smf6phfig2rcf7kd88d85djr6rq1c3vpiyhpyx3"; depends=[graph]; };
   iASeq = derive2 { name="iASeq"; version="1.25.0"; sha256="0p4m13k5n974469xh8vhz8xd5b37ill3i9jmglq0fa47n7rbdjz1"; depends=[]; };
   iBBiG = derive2 { name="iBBiG"; version="1.25.0"; sha256="1dbcazr88ac38g58jgr9byqaql36jvfn5bmr8gibn3hr187c5ypf"; depends=[ade4 biclust xtable]; };
-  iBMQ = derive2 { name="iBMQ"; version="1.21.0"; sha256="19f1iqfcdsq0lg9hbl65qwb7lwp9n36vrdnyah63dn7k3c23p5x1"; depends=[Biobase ggplot2]; };
-  iCARE = derive2 { name="iCARE"; version="1.9.0"; sha256="0z884xysrf00h56l4djq1yrm8478s4f3jqq0bz6sf5wqzibr492k"; depends=[]; };
-  iCNV = derive2 { name="iCNV"; version="1.1.0"; sha256="1kqsrw6pq4lcnfnf5ak4pdmcv3cr7p1jhmk304g5ywxpbd2fdfp9"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; };
+  iBMQ = derive2 { name="iBMQ"; version="1.21.1"; sha256="11bkzp25bv5j4x2xanj5cq173pwhl1av5l7kb94vhw80yhbk9l4r"; depends=[Biobase ggplot2]; };
+  iCARE = derive2 { name="iCARE"; version="1.9.7"; sha256="0bbzn5yx2i7ijfvsglzsi3f7rv6c0043qvv46n859bpq83pgng5p"; depends=[gtools Hmisc plotrix]; };
+  iCNV = derive2 { name="iCNV"; version="1.1.1"; sha256="0rwr2di8215fxjv0wz75ipwdipyxr043yv72m0c03iwq5rccglxd"; depends=[CODEX data_table dplyr fields ggplot2 rlang tidyr truncnorm]; };
   iCOBRA = derive2 { name="iCOBRA"; version="1.9.1"; sha256="08nzcsph0w5zp6l2lwrg2624gsgs939rkv1662ic72jf8759i4s1"; depends=[dplyr DT ggplot2 limma reshape2 ROCR scales shiny shinyBS shinydashboard UpSetR]; };
   iCheck = derive2 { name="iCheck"; version="1.11.0"; sha256="0bs9zzcc1pbdvvzq912yqr2waic72jj4pv6ksqjg6s9wz390a4gc"; depends=[affy Biobase GeneSelectMMD gplots limma lmtest lumi MASS preprocessCore randomForest rgl scatterplot3d]; };
-  iChip = derive2 { name="iChip"; version="1.35.0"; sha256="0c610x3g5nkpwsrkix66s3z8dc24dv11dfidms757hc0fwchnsq3"; depends=[limma]; };
-  iClusterPlus = derive2 { name="iClusterPlus"; version="1.17.0"; sha256="1ax42hac2wqkyawm9dwwzm0lf81cihric78j38v1vjic918l1b14"; depends=[]; };
-  iGC = derive2 { name="iGC"; version="1.11.0"; sha256="1bcbf1azdb4svdjz8yaxs55l76g5c8i1h53s66qjhss8i3pjydr3"; depends=[data_table plyr]; };
-  iPAC = derive2 { name="iPAC"; version="1.25.0"; sha256="1mdcr7fa2y78cnndsd8y08hrmlzbgbsgmhq0kzpszr79xj49kdzx"; depends=[Biostrings gdata multtest scatterplot3d]; };
-  iSEE = derive2 { name="iSEE"; version="1.1.2"; sha256="0x8pmyzpbb1x33ixh1jnpfs58l7b1d12r51gk7gjqxa291phg7zk"; depends=[AnnotationDbi BiocGenerics colourpicker cowplot dplyr DT ggplot2 igraph mgcv rentrez reshape2 rintrojs S4Vectors scales shiny shinyAce shinydashboard shinyjs SingleCellExperiment SummarizedExperiment vipor viridisLite]; };
-  iSeq = derive2 { name="iSeq"; version="1.33.0"; sha256="1sxy4hxpds6k1flmspwf9y4j8wkr96142z64scigg9mf3p88h5zz"; depends=[]; };
+  iChip = derive2 { name="iChip"; version="1.35.1"; sha256="0yaf4q92fjdw80v3ln596f7088wlp7nmwhdxgnbkj0x4kwa9mr2b"; depends=[limma]; };
+  iClusterPlus = derive2 { name="iClusterPlus"; version="1.17.2"; sha256="1da6hn0hysmbsd3mma9aq3qh2bj15hdc83p3lj0725c52xi6f2kx"; depends=[]; };
+  iGC = derive2 { name="iGC"; version="1.11.1"; sha256="02j3bfv5r8cjjp2k7d3w9y80gvygslcgawmhvzp70chjr12a5nds"; depends=[data_table plyr]; };
+  iPAC = derive2 { name="iPAC"; version="1.25.2"; sha256="15jvpz8qmmlcvarnxidmw2x3hn98ngwf2pxa6a8a0rl8qhgis3wb"; depends=[Biostrings gdata multtest scatterplot3d]; };
+  iSEE = derive2 { name="iSEE"; version="1.1.14"; sha256="057shg5ayy1c2xss12jknnfj9riavnd50nv6l39bfbxymmn5gwp1"; depends=[AnnotationDbi BiocGenerics colourpicker cowplot dplyr DT ggplot2 igraph mgcv rentrez reshape2 rintrojs S4Vectors scales shiny shinyAce shinydashboard shinyjs SingleCellExperiment SummarizedExperiment vipor viridisLite]; };
+  iSeq = derive2 { name="iSeq"; version="1.33.1"; sha256="1cw7fmzd0v6rdrqqkaxx0g5fz763sfwf4kyafmvw00chs4rzi21n"; depends=[]; };
   iasva = derive2 { name="iasva"; version="0.99.3"; sha256="1ax0594b3d2glam0lb4dzqzx8bbfdln0wglr96szjdxa6qi31ghk"; depends=[BiocParallel cluster irlba SummarizedExperiment]; };
   ibh = derive2 { name="ibh"; version="1.29.0"; sha256="07954bdkijs41r0h39fhlzpd8d75vhlk8gl4zlbaky93prsmi1hf"; depends=[simpIntLists]; };
   icetea = derive2 { name="icetea"; version="0.99.10"; sha256="14yzjsydnv2k8x183l7a94jmxsd27p2ndwzdvkd93d5nkh5iq36l"; depends=[BiocGenerics BiocParallel Biostrings csaw edgeR GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges limma Rsamtools rtracklayer S4Vectors ShortRead SummarizedExperiment TxDb_Dmelanogaster_UCSC_dm6_ensGene VariantAnnotation]; };
-  ideal = derive2 { name="ideal"; version="1.5.0"; sha256="1pdj0r0qfjwrwvsb4lrwl3mxd6wb4bwmabd9z413868453qk101p"; depends=[AnnotationDbi BiocParallel d3heatmap DESeq2 dplyr DT GenomicRanges ggplot2 GO_db goseq GOstats gplots IHW IRanges knitr limma pcaExplorer pheatmap plyr rentrez rintrojs rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; };
+  ideal = derive2 { name="ideal"; version="1.5.6"; sha256="1k2h2nn0s6pmy5m2l3c6nri11am49c4s2js1q6iywbhmlcxk5dh5"; depends=[AnnotationDbi BiocParallel d3heatmap DESeq2 dplyr DT GenomicRanges ggplot2 GO_db goseq GOstats gplots IHW IRanges knitr limma pcaExplorer pheatmap rentrez rintrojs rmarkdown S4Vectors shiny shinyAce shinyBS shinydashboard stringr SummarizedExperiment topGO UpSetR]; };
   idiogram = derive2 { name="idiogram"; version="1.57.0"; sha256="0nsldgh780amhdafafrkp1lzriwskm3l89fkn2licxvpw63rlajn"; depends=[annotate Biobase plotrix]; };
-  igvR = derive2 { name="igvR"; version="1.1.6"; sha256="12jl0yj6pgjfvrx3rv63nj88zdvakzrh499gx4kz1m5s8wqxswdi"; depends=[BiocGenerics BrowserViz GenomicRanges httpuv rtracklayer VariantAnnotation]; };
-  illuminaio = derive2 { name="illuminaio"; version="0.23.0"; sha256="00qf9qjinyqd16r3zv99cgkwxdy44f2i6q2hlhmic7942j6h6r55"; depends=[base64]; };
+  igvR = derive2 { name="igvR"; version="1.1.17"; sha256="1hqd65n1qkdf54jqghj9jxcbi6sl918ymarwbrgrfrm6dk1mxzsn"; depends=[BiocGenerics BrowserViz GenomicRanges httpuv rtracklayer VariantAnnotation]; };
+  illuminaio = derive2 { name="illuminaio"; version="0.23.2"; sha256="05m18f0ipc89lak30rdlg1b1aafsgjsjzbr6scn18168m12qkd5i"; depends=[base64]; };
   imageHTS = derive2 { name="imageHTS"; version="1.31.0"; sha256="0d7l8w5i0nlfks1iak0qdkxrarfx280wyqbpig38bhbmzkv31xrg"; depends=[Biobase cellHTS2 e1071 EBImage hwriter vsn]; };
-  immunoClust = derive2 { name="immunoClust"; version="1.13.0"; sha256="0z17f415rqad4hmwhxgl1gh8a1r42v5yz38rpq9yhssq7w1mw8q0"; depends=[flowCore lattice]; };
+  immunoClust = derive2 { name="immunoClust"; version="1.13.4"; sha256="04wjiyqp4fcbgyllpqrandvl20cjayymyi35gs3cdg9g2dwci3aq"; depends=[flowCore lattice]; };
   impute = derive2 { name="impute"; version="1.55.0"; sha256="1nb2zpnx9ia2br0044jky4kcqj2vw1vw35s34869i35n90n3vqqc"; depends=[]; };
-  intansv = derive2 { name="intansv"; version="1.21.0"; sha256="0a2qrnw1jd5d7mqvmin54110xvn1089p16bfi14660qzip6cwb0i"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; };
-  interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.19.0"; sha256="1iwv231mc6g2jp6l6b3rs0gm5n1pb7mbah522q3d4s563avs9g0d"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; };
-  interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.19.0"; sha256="0jwsm5i5s6gkxb05n8fmsybyvi5829g6i6y39nxcpd189ihbmv16"; depends=[BiocGenerics shiny]; };
-  inveRsion = derive2 { name="inveRsion"; version="1.29.0"; sha256="12pzk7ppd48ccmfr3q2950pfckcc2kfvgnailwai7jxgss1h1148"; depends=[haplo_stats]; };
-  isobar = derive2 { name="isobar"; version="1.27.0"; sha256="02aa78jia246w729bg4pl54shjwp51yymskhy842xnznw01nd8p7"; depends=[Biobase biomaRt distr ggplot2 plyr]; };
-  isomiRs = derive2 { name="isomiRs"; version="1.9.1"; sha256="1k60zgb2b2yqwzb02nwvri10p1a2qdlgm4g0wg6593fmkr1q9p8h"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics cluster DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors SummarizedExperiment tibble tidyr]; };
-  iterClust = derive2 { name="iterClust"; version="1.3.0"; sha256="1bm2ld3w6sm1jn7s0yk9v7d53xmf2ix411p7pp2fyjqfj6vl3iz4"; depends=[Biobase cluster]; };
+  intansv = derive2 { name="intansv"; version="1.21.3"; sha256="0aqq5mc63s5gyz82wp37m0y3b7rkv2rxxkfld0jw6dn3fp6dapqp"; depends=[BiocGenerics GenomicRanges ggbio IRanges plyr]; };
+  interactiveDisplay = derive2 { name="interactiveDisplay"; version="1.19.3"; sha256="1lmc0x0gfi8jhzl3z8pmkbqmx56xn6fim0ydsrqcaygz25gif6fp"; depends=[AnnotationDbi BiocGenerics Category ggplot2 gridSVG interactiveDisplayBase plyr RColorBrewer reshape2 shiny XML]; };
+  interactiveDisplayBase = derive2 { name="interactiveDisplayBase"; version="1.19.2"; sha256="02b3sps2irfb83zii5c0zxzjp2138xfr2jfdhwvh4h6wzqn2a21q"; depends=[BiocGenerics shiny]; };
+  inveRsion = derive2 { name="inveRsion"; version="1.29.1"; sha256="0bwr76l30sxzdfjjsf7py4i78diwazfjkf237yx8n4kzb0jlkilp"; depends=[haplo_stats]; };
+  ipdDb = derive2 { name="ipdDb"; version="0.99.10"; sha256="1k1giv6jvgy54pa5yqcy0yrmn53x1ggbryg9c7mmpb4dljw7vnrj"; depends=[AnnotationDbi AnnotationHub assertthat Biostrings DBI GenomicRanges IRanges RSQLite]; };
+  isobar = derive2 { name="isobar"; version="1.27.1"; sha256="0kznz8h6b8wq1z8xqkhn0k6gmc7wbxdfv3vy19s93njdk7w3gn5d"; depends=[Biobase biomaRt distr ggplot2 plyr]; };
+  isomiRs = derive2 { name="isomiRs"; version="1.9.5"; sha256="08xvxpl1x46rs4zh34irypq0bsici3xhh52dzirhr0671p9ihqa6"; depends=[AnnotationDbi assertive_sets Biobase BiocGenerics cluster cowplot DEGreport DESeq2 DiscriMiner dplyr GenomicRanges GGally ggplot2 gplots gridExtra gtools IRanges limma RColorBrewer readr reshape rlang S4Vectors SummarizedExperiment tibble tidyr]; };
+  iterClust = derive2 { name="iterClust"; version="1.3.2"; sha256="1gkqnpyhispjbzc30dfs1hdv1vq6r33sqkmjnzcil4mbr529gvc3"; depends=[Biobase cluster]; };
   iterativeBMA = derive2 { name="iterativeBMA"; version="1.39.0"; sha256="07xy5vjmgzglab6hp82xkd6gc67lb58n8g26zvssldpzm1kir70j"; depends=[Biobase BMA leaps]; };
   iterativeBMAsurv = derive2 { name="iterativeBMAsurv"; version="1.39.0"; sha256="1cj63g97xm05clix5cv3dmjdwb806rb5va262hfhvmd2aa6bgq2k"; depends=[BMA leaps survival]; };
-  iteremoval = derive2 { name="iteremoval"; version="1.1.0"; sha256="0ggmvmif5ak35mjzd000dflcbnp0zx14zspn2nabkak74zvdjsgm"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; };
+  iteremoval = derive2 { name="iteremoval"; version="1.1.1"; sha256="09qdb60ndjljn4wgpgnxcy2yvivlpvzgr6vs04ssjwq9dk8vwc9l"; depends=[GenomicRanges ggplot2 magrittr SummarizedExperiment]; };
   ivygapSE = derive2 { name="ivygapSE"; version="1.3.0"; sha256="1730rd55ws484q4iwgd06cps8jfg7f1wzryjr0gzaykxq7n2yi94"; depends=[ggplot2 hwriter plotly S4Vectors shiny SummarizedExperiment survival survminer UpSetR]; };
   joda = derive2 { name="joda"; version="1.29.0"; sha256="0n76l7mrkqrsvjq67hp9am3b6ixi2v9vz7hppj36y37r02myhdlb"; depends=[bgmm RBGL]; };
-  karyoploteR = derive2 { name="karyoploteR"; version="1.7.1"; sha256="1fvvc8181vasbdky42yijhknm57pypb6abkswl9si91fv2zm4z28"; depends=[bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors]; };
-  kebabs = derive2 { name="kebabs"; version="1.15.0"; sha256="061cpbsqd444p3jw08kv72b3q2cbrzd1939vgbbsg98l550684bs"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; };
+  karyoploteR = derive2 { name="karyoploteR"; version="1.7.17"; sha256="1ks87kkw12gr4598rpq262axaszk4kppm5dhs4hjhy0gkwlm4lhh"; depends=[bamsignals bezier biovizBase digest GenomeInfoDb GenomicFeatures GenomicRanges IRanges memoise regioneR Rsamtools rtracklayer S4Vectors]; };
+  kebabs = derive2 { name="kebabs"; version="1.15.2"; sha256="1d08ad2cbrd77qlgmf3y6frya8g5kn8x9k7paabch1fxpzx4sj2g"; depends=[apcluster Biostrings e1071 IRanges kernlab LiblineaR Matrix Rcpp S4Vectors XVector]; };
   keggorthology = derive2 { name="keggorthology"; version="2.33.0"; sha256="11a1d08pycj99xzhwblgrjwl6idm6l90i0ya1c0q0bwmaiyqqbwp"; depends=[AnnotationDbi DBI graph hgu95av2_db]; };
   kimod = derive2 { name="kimod"; version="1.9.0"; sha256="1q2ndbpw13c9a6g5vs29w5zzrw3ac5y5rjnndw660xljfphid6x4"; depends=[Biobase cluster]; };
-  kissDE = derive2 { name="kissDE"; version="1.1.0"; sha256="0k5jw601sygbvvqysha243mbhwqv80c6k8dmbj9mdqpkd0bxw6aw"; depends=[aod Biobase DESeq2 DSS ggplot2 glmnet gplots matrixStats R_utils]; };
-  kmknn = derive2 { name="kmknn"; version="0.99.13"; sha256="1qdsm0y1saz594s2bijqwfg74yjds1s55mzsw26sw11rvk63x1z6"; depends=[BiocParallel DelayedArray Rcpp]; };
+  kissDE = derive2 { name="kissDE"; version="1.1.3"; sha256="0gm63ixcr3gfg64bg253n9vp1gasmdg3xpb4i27gq7njsx7hs6bw"; depends=[aod Biobase DESeq2 doParallel DSS foreach ggplot2 gplots matrixStats]; };
+  kmknn = derive2 { name="kmknn"; version="0.99.16"; sha256="14gvgdz4gvpv5bvr3l7rbn356cqvg3nqq7vcavgyd7bqsvk6mmg3"; depends=[BiocParallel DelayedArray Rcpp]; };
   lapmix = derive2 { name="lapmix"; version="1.47.0"; sha256="08qj6i6y42ax82j29maf89zs0k03iv6p30v1zlvgixfh1p86ffk4"; depends=[Biobase]; };
   ldblock = derive2 { name="ldblock"; version="1.11.1"; sha256="0z53xkh2khlfsnvr0nqsw8k6s375ba2y5a3njbr9qnif3r0846km"; depends=[BiocGenerics erma GenomeInfoDb GenomicFiles GO_db Homo_sapiens Matrix Rsamtools snpStats VariantAnnotation]; };
   les = derive2 { name="les"; version="1.31.0"; sha256="11ad0v5j31s8kcg4572ga4znnpx9ry83m994bqbk3h51cb48pzm8"; depends=[boot fdrtool gplots RColorBrewer]; };
+  levi = derive2 { name="levi"; version="0.99.13"; sha256="0n1sl3l7xdp346jz5s6xgfmdy0i71k05khkjygkp0yqnlnapd48z"; depends=[colorspace dplyr DT ggplot2 httr igraph knitr RColorBrewer Rcpp reshape2 shiny shinydashboard shinyjs testthat xml2]; };
   lfa = derive2 { name="lfa"; version="1.11.0"; sha256="1vww3lfzb3kx2hp1cm48vg1rmnazgklz1qz1y36yydg53lbl8igi"; depends=[corpcor]; };
-  limma = derive2 { name="limma"; version="3.37.2"; sha256="1wf9xpp8l43ld7mkinqznd2dxlpw4w9vgd8y8zg9nz7gp5h0b148"; depends=[]; };
+  limma = derive2 { name="limma"; version="3.37.10"; sha256="16jdx417iahrvai0p32qaf6cgknb2pc7bjas5ba4brd2p255sn8i"; depends=[]; };
+  limmaGUI = derive2 { name="limmaGUI"; version="1.57.1"; sha256="09dykl3gd231j0xi45j23mv0p9vk0xdhyjls1z5026vclnv6037s"; depends=[limma R2HTML tkrplot xtable]; };
   lmdme = derive2 { name="lmdme"; version="1.23.0"; sha256="0192ffh3qmqx31d67zxr8sg7qvwd4wmcgzxq44w9sflb947sn8ds"; depends=[limma pls stemHypoxia]; };
-  loci2path = derive2 { name="loci2path"; version="1.1.0"; sha256="0lqixyyv6wrmqbfl67yy131421pmyi6hp7hn11lbf3xm8q56smah"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; };
-  logicFS = derive2 { name="logicFS"; version="1.51.0"; sha256="1bijly35nfy6ix6b0h2salriy143xyc3l591hcngvif504zjd57b"; depends=[LogicReg mcbiopi]; };
+  loci2path = derive2 { name="loci2path"; version="1.1.1"; sha256="1mgnx1dji2dc3jd9biv4bs5f8sgpkxzk6mwsfivfbjll9m7hprb7"; depends=[BiocParallel data_table GenomicRanges pheatmap RColorBrewer S4Vectors wordcloud]; };
+  logicFS = derive2 { name="logicFS"; version="2.1.18"; sha256="14jdnjlgsgbciahljmp8wb5zn3dbqy2r3pywbn2iqqx628hl0li6"; depends=[LogicReg mcbiopi survival]; };
   logitT = derive2 { name="logitT"; version="1.39.0"; sha256="0ynd7h26ask2i15cxikx9igcm9cdmmihg561l1dv3m9zw84s6mvb"; depends=[affy]; };
   lol = derive2 { name="lol"; version="1.29.0"; sha256="050i433xkj365q7k5i7gw07z8li29myd3zgavjg14p9lkdcwia0w"; depends=[Matrix penalized]; };
   lpNet = derive2 { name="lpNet"; version="2.13.0"; sha256="1k94rsji8p9ri8mvs6xc23dm4fq4pxcd9323c6jllq9bdljxffkp"; depends=[lpSolve nem]; };
@@ -1163,208 +1243,217 @@ in with self; {
   maPredictDSC = derive2 { name="maPredictDSC"; version="1.19.0"; sha256="1hn35cgd9571b5vz3wv76lhg2hr77kl1s6r6nmpnjph4asqhj7yg"; depends=[affy AnnotationDbi caret class e1071 gcrma hgu133plus2_db limma LungCancerACvsSCCGEO MASS ROC ROCR]; };
   maSigPro = derive2 { name="maSigPro"; version="1.53.0"; sha256="0gf80ff0jhag6mj6r888ivla5fccrdg63d7wh1g322ygp5b27h4s"; depends=[Biobase MASS mclust venn]; };
   maanova = derive2 { name="maanova"; version="1.51.0"; sha256="0az1jxfmjjpz3aqb5hvxpw912rh188b6gf02jj3q4v294131rqw4"; depends=[Biobase]; };
-  macat = derive2 { name="macat"; version="1.55.0"; sha256="1bmalm7v6hxab5vcqqq6s3s2313xq0pifk7yxq20kh7n8m7n64iw"; depends=[annotate Biobase]; };
-  made4 = derive2 { name="made4"; version="1.55.0"; sha256="0pywxxcxbi3wihx7v67rcgk7clzwkc0611687rq764xlkwljaxfw"; depends=[ade4 gplots RColorBrewer scatterplot3d]; };
-  maftools = derive2 { name="maftools"; version="1.7.05"; sha256="070w04yq3khxl3pnd96cw8kxfv1j7iwwqwpc618pnarr7ii734mz"; depends=[Biostrings changepoint cometExactTest ComplexHeatmap cowplot data_table ggplot2 ggrepel gridExtra mclust NMF RColorBrewer rjson Rsamtools survival VariantAnnotation wordcloud]; };
+  macat = derive2 { name="macat"; version="1.55.3"; sha256="0ywngyddagavml8fyr3m2g9aic1bvy49r3mw8kbx1gy4mcqp0q9a"; depends=[annotate Biobase]; };
+  made4 = derive2 { name="made4"; version="1.55.2"; sha256="16r6dsg0ayj26xmblzlwmp93jhw8j1b7cv2z372id2cy1girfdxs"; depends=[ade4 gplots RColorBrewer scatterplot3d]; };
+  maftools = derive2 { name="maftools"; version="1.7.51"; sha256="1gvnbcyipjl13yj6yix693d6wibkamwqnmh2zds31hlbj0m2f09a"; depends=[Biostrings BSgenome cometExactTest ComplexHeatmap cowplot data_table ggplot2 ggrepel gridExtra mclust NMF RColorBrewer rjson survival wordcloud]; };
   maigesPack = derive2 { name="maigesPack"; version="1.45.0"; sha256="04ihpaqpkimf5k2j8hf2zwjqm6s75nkr1bn8gsvg21m88gajsh3x"; depends=[convert graph limma marray]; };
   makecdfenv = derive2 { name="makecdfenv"; version="1.57.0"; sha256="1v9a3r9gxijglxyhjb52jqm6p9vqkn549cim9zbw6mhngn2cqnzs"; depends=[affy affyio Biobase zlibbioc]; };
-  manta = derive2 { name="manta"; version="1.27.0"; sha256="0p3r0l0sgnf9rrih35a3n7c6l9a3q9xpd2hilmf3pbrrc5hrxnhm"; depends=[caroline edgeR Hmisc]; };
-  mapscape = derive2 { name="mapscape"; version="1.5.0"; sha256="0fs1cn7aw2awgjqmjjb70p5pz6fdnwfvix57wijvalc5qy777h1a"; depends=[base64enc htmlwidgets jsonlite stringr]; };
+  manta = derive2 { name="manta"; version="1.27.2"; sha256="15hqw96xpprmq38f0gq50ik6ynqk6k51fp3gxcsy1qbpk9kp89jx"; depends=[caroline edgeR Hmisc]; };
+  mapscape = derive2 { name="mapscape"; version="1.5.1"; sha256="1aqxpwz9a87y5kfxnz98axzc7q7d59qkw61jnj5sq9qv2s565q5v"; depends=[base64enc htmlwidgets jsonlite stringr]; };
   marray = derive2 { name="marray"; version="1.59.0"; sha256="01kgc79bhg5yg1zkglkpm85zrhm3dl5j63hvxbll3xsrrmy4bhs9"; depends=[limma]; };
   martini = derive2 { name="martini"; version="1.1.0"; sha256="1aj39flz18cnl9042hqlnqzyq6ff9j4dl5b2fm29y150s0j2wz5p"; depends=[igraph Matrix Rcpp RcppEigen Rgin S4Vectors snpStats]; };
-  maser = derive2 { name="maser"; version="0.99.15"; sha256="12i7yzv4id25186ny5j4bzjlg6jwrk0mwisnpaakvk9fwja4ygl5"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; };
+  maser = derive2 { name="maser"; version="0.99.16"; sha256="12dchpcxjj3bc4qz0viqxg20c1yv42830l8jc38k3nx90iafs93g"; depends=[BiocGenerics data_table dplyr DT GenomeInfoDb GenomicRanges ggplot2 Gviz IRanges reshape2 rtracklayer]; };
   maskBAD = derive2 { name="maskBAD"; version="1.25.0"; sha256="09g28yd1jwxrvqh59lbcnni8ba1kk0gkgcxb2x7s9m35nx8sdr04"; depends=[affy gcrma]; };
   massiR = derive2 { name="massiR"; version="1.17.0"; sha256="0gf0j965ssrawvyx4i3mq5xrwbjy73vplig3d5518425l38g3ajp"; depends=[Biobase cluster diptest gplots]; };
-  matchBox = derive2 { name="matchBox"; version="1.23.0"; sha256="0gkn4jx9fhpgdrbcqvq6yjy3yyh1fsxw7gq9izcy2mkyp9z2343i"; depends=[]; };
-  matter = derive2 { name="matter"; version="1.7.1"; sha256="0vjabjvh3gcxlvjbyncvj6jngwg701h9kr9w334rz1f4l9szkvrl"; depends=[biglm BiocGenerics digest irlba]; };
+  matchBox = derive2 { name="matchBox"; version="1.23.1"; sha256="134bv5pplxb2vg75wwb6x7b0mi5qscidrz9xpnf3wfk446mvpzyd"; depends=[]; };
+  matter = derive2 { name="matter"; version="1.7.6"; sha256="029qb75k8ps0d979wrvv99666dn6513mhk26x7s0ahj5b75iyymk"; depends=[biglm BiocGenerics digest irlba]; };
   mcaGUI = derive2 { name="mcaGUI"; version="1.29.1"; sha256="0klxp5g2s7c6k93imdkc9dxvzzvb89d5jf7x7p7v0mmsm6rbhg95"; depends=[bpca foreign gWidgets gWidgetsRGtk2 lattice MASS OTUbase proto vegan]; };
   mdgsa = derive2 { name="mdgsa"; version="1.13.1"; sha256="06p6dfffc7h80wzsypq1xk80q1ilzqpjxrwmvi70sdqv9fc9ac17"; depends=[AnnotationDbi cluster DBI GO_db KEGG_db Matrix]; };
   mdp = derive2 { name="mdp"; version="1.1.0"; sha256="0a5r860nywkd35h16vsgqqj0iin0ldbra0b8cs1ql2bwmdjccl7i"; depends=[ggplot2]; };
   mdqc = derive2 { name="mdqc"; version="1.43.0"; sha256="1h0pk6amx5vj9zxxwa3aydhnph0cn2qcibz7xk5whpr3fqrzk1b4"; depends=[cluster MASS]; };
-  meshes = derive2 { name="meshes"; version="1.7.1"; sha256="1ccbl1gnsapb5r60d2bdfgrj2fmn1glk5yxjxjlv68r9xkv0nfk8"; depends=[AnnotationDbi DOSE enrichplot GOSemSim MeSH_db rvcheck]; };
-  meshr = derive2 { name="meshr"; version="1.17.0"; sha256="03q7ihrg2a61kw3nkb13jn2fj3mv0p9g6pas5dm62z5i0yfgqypz"; depends=[BiocGenerics Category cummeRbund fdrtool MeSH_Aca_eg_db MeSH_AOR_db MeSH_Bsu_168_eg_db MeSH_db MeSH_Hsa_eg_db MeSH_PCR_db MeSH_Syn_eg_db MeSHDbi org_Hs_eg_db S4Vectors]; };
+  meshes = derive2 { name="meshes"; version="1.7.2"; sha256="03zhlaz7z6z6z9k4c0apqa871g1z5597szk7zq9vsdp210bbws7y"; depends=[AnnotationDbi DOSE enrichplot GOSemSim MeSH_db rvcheck]; };
+  meshr = derive2 { name="meshr"; version="1.17.2"; sha256="07y38icgvdncfqw4n4dmigwgl4dwwxmxypwi2rzd586m1wb3diy6"; depends=[BiocGenerics Category cummeRbund fdrtool MeSH_Aca_eg_db MeSH_AOR_db MeSH_Bsu_168_eg_db MeSH_db MeSH_Hsa_eg_db MeSH_PCR_db MeSH_Syn_eg_db MeSHDbi org_Hs_eg_db RSQLite S4Vectors]; };
   messina = derive2 { name="messina"; version="1.17.0"; sha256="0zllyp3azgv0yyx0hdcad1bv41shqvkyw143nb7nc79x34zgm11m"; depends=[foreach ggplot2 plyr Rcpp survival]; };
   metaArray = derive2 { name="metaArray"; version="1.59.0"; sha256="0xp7qnvgj9qa83lwv6dcbs3fw41jyp1lsw17n87jr9x2gnz9v2ly"; depends=[Biobase MergeMaid]; };
   metaCCA = derive2 { name="metaCCA"; version="1.9.0"; sha256="1i8qgq7qxngkrgibwqh8c6yigpi5w7bf1jivpmkk1swzlsa620y8"; depends=[]; };
   metaMS = derive2 { name="metaMS"; version="1.17.0"; sha256="194pw7fbf9nr0wxq7fbg4j45lh36va6ypr62aj8zc6l2hh42d2b5"; depends=[BiocGenerics CAMERA Matrix robustbase xcms]; };
   metaSeq = derive2 { name="metaSeq"; version="1.21.0"; sha256="0fcwfk0vz0pa5pykxlf4g8zg5iyd40qncq40kh8zydymkkz7njqg"; depends=[NOISeq Rcpp snow]; };
   metabomxtr = derive2 { name="metabomxtr"; version="1.15.0"; sha256="09mx5a26maf4zm670r17xs9bfyn7xz6hhyjh9bbbkm4lf0fyph22"; depends=[Biobase BiocParallel Formula ggplot2 multtest optimx plyr]; };
-  metagene = derive2 { name="metagene"; version="2.13.1"; sha256="0lyv5mm5bvvj2v3519swvwwsgmma952ccy8rxnpzr628lrvllcw9"; depends=[BiocParallel data_table DBChIP EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats muStat purrr R6 Rsamtools rtracklayer stringr]; };
+  metagene = derive2 { name="metagene"; version="2.13.3"; sha256="19g9nh13b8wr4kbpr57vhnm2237zzx2iv4pvsvabsswr9ls09pfl"; depends=[BiocParallel data_table DBChIP EnsDb_Hsapiens_v86 ensembldb GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 gplots IRanges magrittr matrixStats muStat purrr R6 Rsamtools rtracklayer stringr]; };
   metagenomeFeatures = derive2 { name="metagenomeFeatures"; version="2.1.0"; sha256="1dbw7cvyrh4w8cjqdvslph3lbrxxyxnpc71l69myasf4w1hwwsjb"; depends=[ape Biobase Biostrings dbplyr DECIPHER dplyr lattice lazyeval magrittr purrr RSQLite S4Vectors stringr]; };
-  metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.23.0"; sha256="09bfw6g9k4mimnlcrqf5690gpwn5f02pcairnnrmkx5kx7smj4zw"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer]; };
+  metagenomeSeq = derive2 { name="metagenomeSeq"; version="1.23.1"; sha256="141hm3dbbcpjy743gwcn0ajvkb6af4g4cxqq7lads1zxhfpl6fq4"; depends=[Biobase foreach glmnet gplots limma Matrix matrixStats RColorBrewer]; };
   metahdep = derive2 { name="metahdep"; version="1.39.0"; sha256="1zm6j0i9myn4q4lwc2almy6d6khg1kqb8ij11cr5dhxmwx444ma8"; depends=[]; };
-  metaseqR = derive2 { name="metaseqR"; version="1.21.0"; sha256="1ny7srzlw1gv0bf4zflji0k48s6mw6cl2141y5l6wxwyiljgxvdp"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; };
+  metaseqR = derive2 { name="metaseqR"; version="1.21.2"; sha256="1vyjn9v0z3wx69ncqp2gzswwz6b47aarqf3dk1hpzwhrr30sqli8"; depends=[baySeq biomaRt brew corrplot DESeq EDASeq edgeR gplots limma log4r NBPSeq NOISeq qvalue rjson vsn]; };
   metavizr = derive2 { name="metavizr"; version="1.5.1"; sha256="1wvdzqvjlr2ygxkq2pvkfw5xdr09yafmalf4k5ya7mc70cg6w7nb"; depends=[Biobase data_table digest epivizr epivizrData epivizrServer epivizrStandalone GenomeInfoDb httr metagenomeSeq phyloseq vegan]; };
-  methInheritSim = derive2 { name="methInheritSim"; version="1.3.0"; sha256="180lha5avnrlnkc709hy5akmajwpkzb2slk7gf7641349lx3890v"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; };
+  methInheritSim = derive2 { name="methInheritSim"; version="1.3.1"; sha256="0grqjwv75yd0v3ji99cwnbbgp6s488kyh5d3kan1x88wqy6p00cw"; depends=[BiocGenerics GenomeInfoDb GenomicRanges IRanges methylKit msm S4Vectors]; };
   methVisual = derive2 { name="methVisual"; version="1.33.0"; sha256="0pyj09zkan51w6w0wnkg3ww49hlwqarl5sfw7wrbarfdvxvlyqpa"; depends=[Biostrings ca gridBase gsubfn IRanges plotrix sqldf]; };
-  methimpute = derive2 { name="methimpute"; version="1.3.1"; sha256="09v7dw2sdkzrypw9brqyym9ipmplww2r3jh5fybw66zj2fiqxhx6"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; };
+  methimpute = derive2 { name="methimpute"; version="1.3.2"; sha256="1nd5ay6ymf0hchv1q62qpj3by4h7c83x59b8d72w1hrv5xcgqhi6"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges ggplot2 IRanges minpack_lm Rcpp reshape2]; };
   methyAnalysis = derive2 { name="methyAnalysis"; version="1.23.0"; sha256="1fhhk2yqcq2rh30369izn32w7jzcyzhlwaa5wcds4mb2caiyr4kj"; depends=[annotate AnnotationDbi Biobase BiocGenerics biomaRt genefilter GenomeInfoDb GenomicFeatures GenomicRanges genoset Gviz IRanges lumi methylumi org_Hs_eg_db rtracklayer SummarizedExperiment VariantAnnotation]; };
-  methylInheritance = derive2 { name="methylInheritance"; version="1.5.0"; sha256="1bf765bvv63xp3fxxf9rx0x5z8x4sk1xfwm67nm10shsd4wbh0za"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; };
-  methylKit = derive2 { name="methylKit"; version="1.7.4"; sha256="1mi3w3b60k1nnrp7g2dv4b561y9ws493n5v0s8gwz4w7m12xb2qx"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; };
-  methylMnM = derive2 { name="methylMnM"; version="1.19.0"; sha256="1rzx8sd1kg4krzjqbnv0fi89lgc12xjdzlkbc8dpj8mx8d6gp8xg"; depends=[edgeR statmod]; };
+  methylGSA = derive2 { name="methylGSA"; version="0.99.16"; sha256="1jxwys6dlhqs8fq9f8vw63d5llzcbvyyczw2qgi94qwispb5s5bi"; depends=[AnnotationDbi clusterProfiler ggplot2 GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylationEPICanno_ilm10b2_hg19 missMethyl org_Hs_eg_db reactome_db RobustRankAggreg stringr]; };
+  methylInheritance = derive2 { name="methylInheritance"; version="1.5.2"; sha256="0vvwzxabm5xz94zfvi1yjw43d8asmv7wmcngjx571qphcl1hlyab"; depends=[BiocParallel GenomicRanges ggplot2 gridExtra IRanges methylKit rebus S4Vectors]; };
+  methylKit = derive2 { name="methylKit"; version="1.7.10"; sha256="1m8cb5w8rhcnsdh01ahcr16hnjpvzb77albxlbqcprhndvd7cxgh"; depends=[data_table emdbook fastseg GenomeInfoDb GenomicRanges gtools IRanges KernSmooth limma mclust qvalue R_utils Rcpp Rhtslib Rsamtools rtracklayer S4Vectors zlibbioc]; };
+  methylMnM = derive2 { name="methylMnM"; version="1.19.1"; sha256="1h0ydwljbrdyb5vn688303zp61np5a0zaah974g6v8mgs4izdqvk"; depends=[edgeR statmod]; };
   methylPipe = derive2 { name="methylPipe"; version="1.15.0"; sha256="0v00cc5jiw0n6nxq5nvbmaknbanp0gbzk8d3p5igfj3pva6zvpjy"; depends=[BiocGenerics Biostrings data_table GenomeInfoDb GenomicAlignments GenomicRanges gplots Gviz IRanges marray Rsamtools S4Vectors SummarizedExperiment]; };
   methylumi = derive2 { name="methylumi"; version="2.27.0"; sha256="1carjnp9fbldzyms0cnc5lv92y4cxgzri9wxd5m4svrdfagnj75z"; depends=[annotate AnnotationDbi Biobase BiocGenerics FDb_InfiniumMethylation_hg19 genefilter GenomeInfoDb GenomicRanges ggplot2 illuminaio IRanges lattice matrixStats minfi reshape2 S4Vectors scales SummarizedExperiment]; };
-  methyvim = derive2 { name="methyvim"; version="1.3.0"; sha256="1w8jm4qba2cqi1ghrk0lmwhmdh6hn9fdbzh8f3gf7hlbbg5wf678"; depends=[BiocGenerics BiocParallel bumphunter cluster doFuture dplyr future GenomeInfoDb ggplot2 ggsci gridExtra gtools IRanges limma minfi SummarizedExperiment superheat tmle]; };
-  mfa = derive2 { name="mfa"; version="1.3.0"; sha256="14qb1l4czylj2jid2fqk24pqkg2rgv4fs2d719xmd8yd9snhda7r"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; };
+  methyvim = derive2 { name="methyvim"; version="1.3.1"; sha256="1jycwzqf7147pcdfais5n876x9w61xsr41jq2kgqhnmxz05rhwkb"; depends=[BiocGenerics BiocParallel bumphunter cluster doFuture dplyr future GenomeInfoDb ggplot2 ggsci gridExtra gtools IRanges limma minfi S4Vectors SummarizedExperiment superheat tmle]; };
+  mfa = derive2 { name="mfa"; version="1.3.1"; sha256="1nn35lxbq6dqsgc21pkbl7x803v385n360wnjv1qxjs9b8w8xqjk"; depends=[Biobase coda dplyr ggmcmc ggplot2 magrittr MCMCglmm MCMCpack Rcpp tibble]; };
   mgsa = derive2 { name="mgsa"; version="1.29.0"; sha256="1vhp23qx5vzaqmn06vngfd9c3y5ygizc6hhx1ccv7m5x4lz2a4jg"; depends=[gplots]; };
-  miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.5.0"; sha256="0gj23y3sk269j0zci53f9b3mdqvdnk84awg80zxv5s25wjzsvwwf"; depends=[]; };
-  miRLAB = derive2 { name="miRLAB"; version="1.11.0"; sha256="12xyplcm923lhwpjxwy8a9xfn6mrhpcf264kyckzswmxzvnqy3n8"; depends=[energy entropy glmnet gplots Hmisc httr impute limma pcalg RCurl Roleswitch stringr]; };
+  miRBaseConverter = derive2 { name="miRBaseConverter"; version="1.5.6"; sha256="0r6cgvslm1lsg1mhrxzdghglk55zh7f3n1lhk136hk5nqh58nhk9"; depends=[]; };
+  miRLAB = derive2 { name="miRLAB"; version="1.11.1"; sha256="18bqx7gxx3hs9mfvgidnngf57grlxnapq8axp2cyhvbvspwaabb6"; depends=[Category ctc dplyr energy entropy glmnet GOstats gplots heatmap_plus Hmisc httr impute InvariantCausalPrediction limma org_Hs_eg_db pcalg RCurl Roleswitch stringr SummarizedExperiment TCGAbiolinks]; };
   miRNAmeConverter = derive2 { name="miRNAmeConverter"; version="1.9.0"; sha256="116zkdwspzb0rp6yhz9bjfarbi2mvvlngsb53zs1js59kzsrw06a"; depends=[AnnotationDbi DBI miRBaseVersions_db reshape2]; };
   miRNApath = derive2 { name="miRNApath"; version="1.41.0"; sha256="1hndq9aq3r3mci5j9ysfkb8kdw2zp7bbi3j7qfcdchm9q3g78rya"; depends=[]; };
-  miRNAtap = derive2 { name="miRNAtap"; version="1.15.0"; sha256="03i5bbjygkas379kp6frf68d4f7md3safbkayqiccdaq1vszah08"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; };
-  miRcomp = derive2 { name="miRcomp"; version="1.11.0"; sha256="08b4na83sdp3q6hcadbyc59jmd151vwg26prjvxvsmacqajlf2xc"; depends=[Biobase KernSmooth miRcompData]; };
+  miRNAtap = derive2 { name="miRNAtap"; version="1.15.1"; sha256="030kl4i7m1apxb4r3r3p2fbq2429zcm2aja96vdr6x2vmrna3nr5"; depends=[AnnotationDbi DBI plyr RSQLite sqldf stringr]; };
+  miRSM = derive2 { name="miRSM"; version="0.99.28"; sha256="04liw858ihv2ljg4w14gj0mrkfrsycnfg0k0pp041pz158d4wn78"; depends=[BiBitR BicARE biclust Biobase dynamicTreeCut fabia flashClust GFA GSEABase iBBiG igraph isa2 linkcomm MCL miRsponge NMF PMA Rcpp rqubic runibic s4vd SummarizedExperiment WGCNA]; };
+  miRcomp = derive2 { name="miRcomp"; version="1.11.1"; sha256="1am0pxrdp297z12wbg1nlf7lbc37d9v01nb6hp4zw5gdkf3rfagd"; depends=[Biobase KernSmooth miRcompData]; };
   miRmine = derive2 { name="miRmine"; version="1.3.0"; sha256="10j2f6ldxxf78aps1ygvdzpvga5smb4xv9m4mhgbhl9qfbkqvkd1"; depends=[SummarizedExperiment]; };
-  miRsponge = derive2 { name="miRsponge"; version="1.7.0"; sha256="1w61pnjzp6g7p6sz6y88h6zdifmqdijr89y25rqrgk6ybz50206j"; depends=[clusterProfiler corpcor DOSE igraph linkcomm ProNet ReactomePA survival varhandle]; };
+  miRsponge = derive2 { name="miRsponge"; version="1.7.6"; sha256="1isl9mi8bqwxxsm1miv7bh0xahsg3lb22q0lyj35ij0bhkdr1sw7"; depends=[clusterProfiler corpcor DOSE igraph linkcomm MCL Rcpp ReactomePA survival varhandle]; };
   microRNA = derive2 { name="microRNA"; version="1.39.0"; sha256="0c1dvhp81kxv1kxr77rl7wgq5wr92gj37m8qsgn0b40zs5b1b49i"; depends=[Biostrings]; };
-  microbiome = derive2 { name="microbiome"; version="1.3.1"; sha256="0vwx4m4w26lrs5n30ikc5h38bcbpi5ynfiqm8kbnqmldzsfcq56q"; depends=[dplyr ggplot2 phyloseq reshape2 tidyr vegan]; };
-  mimager = derive2 { name="mimager"; version="1.5.0"; sha256="1jl3j7l75g04a7w2cf7kgci78b2q68wadpbq8hcg91qrr1jahw89"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; };
+  microbiome = derive2 { name="microbiome"; version="1.3.3"; sha256="17gnyy8qwxjg86i8nx4mpyhrsy8mkmzyhgmxfngkvlyb3cqqvbdl"; depends=[dplyr ggplot2 phyloseq reshape2 tidyr vegan]; };
+  mimager = derive2 { name="mimager"; version="1.5.3"; sha256="1zpp71qjws6qm1cdl7s057mgijbsqhahklaq0flc4izvjn7awkrs"; depends=[affy affyPLM Biobase BiocGenerics DBI gtable oligo oligoClasses preprocessCore S4Vectors scales]; };
   minet = derive2 { name="minet"; version="3.39.0"; sha256="0lbga3id91swx8vnfcw4vgwq5bypr3a110il3a84kwr9naq9vnvi"; depends=[infotheo]; };
-  minfi = derive2 { name="minfi"; version="1.27.5"; sha256="107y7npvk5cdr7nz6ll8whyhc83ni1wl3vsx28wyblh7qwk3fh64"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; };
+  minfi = derive2 { name="minfi"; version="1.27.8"; sha256="0vizm0alsczrjqryzhl7za6n3gc6dmr3z6h2dihn31fc74z0lqyn"; depends=[beanplot Biobase BiocGenerics BiocParallel Biostrings bumphunter data_table DelayedArray DelayedMatrixStats genefilter GenomeInfoDb GenomicRanges GEOquery HDF5Array illuminaio IRanges lattice limma MASS mclust nlme nor1mix preprocessCore quadprog RColorBrewer reshape S4Vectors siggenes SummarizedExperiment]; };
   mirIntegrator = derive2 { name="mirIntegrator"; version="1.11.0"; sha256="1f6xi68rgc5xgmcpv25lfz9khdwh94k59a2r2lj81y7h1fg3asck"; depends=[AnnotationDbi ggplot2 graph org_Hs_eg_db Rgraphviz ROntoTools]; };
-  missMethyl = derive2 { name="missMethyl"; version="1.15.0"; sha256="027avacdx9h4b2gj7sv0a1a38iaby0x882zbn25zh4fabgjclffv"; depends=[AnnotationDbi BiasedUrn GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b2_hg19 IlluminaHumanMethylationEPICmanifest limma methylumi minfi org_Hs_eg_db ruv statmod stringr]; };
-  missRows = derive2 { name="missRows"; version="1.1.0"; sha256="10wj9g5xy3y7zk3n0nnkvppj66zl226bd5cjbkgwicz8kb29n4ld"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; };
+  missMethyl = derive2 { name="missMethyl"; version="1.15.5"; sha256="0p2mgq5njh830vhi2najh3slzhqz56fzi947xvrbyz5crqn8aq02"; depends=[AnnotationDbi BiasedUrn GO_db IlluminaHumanMethylation450kanno_ilmn12_hg19 IlluminaHumanMethylation450kmanifest IlluminaHumanMethylationEPICanno_ilm10b4_hg19 IlluminaHumanMethylationEPICmanifest limma methylumi minfi org_Hs_eg_db ruv statmod stringr]; };
+  missRows = derive2 { name="missRows"; version="1.1.1"; sha256="09s34cd47hylqwi4qmcnba4qmwiz0n1n3z0m7pabqmw7ysn20mi8"; depends=[ggplot2 gtools MultiAssayExperiment plyr S4Vectors]; };
   mitoODE = derive2 { name="mitoODE"; version="1.19.0"; sha256="1qkhf4y5cnwxv39lacdph3r030d9d4jc76lzgg9gl7gyk9801rhh"; depends=[KernSmooth MASS minpack_lm mitoODEdata]; };
-  mlm4omics = derive2 { name="mlm4omics"; version="0.99.20"; sha256="1h6s1ddj73wy1v79vpvjsf5hkjyxf3fha5w2n2cqr89ix4k76l3l"; depends=[BH ggplot2 MASS Matrix Rcpp RcppEigen rstan rstantools StanHeaders]; };
+  mixOmics = derive2 { name="mixOmics"; version="6.4.6"; sha256="1id5zcqqdzh72k41sc267fi7cbqyzlfwb8758xnxibgp9a3mjqci"; depends=[corpcor dplyr ellipse ggplot2 gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 tidyr]; };
+  mlm4omics = derive2 { name="mlm4omics"; version="0.99.22"; sha256="0yrz6cg6w8nsv5lkpzs43jla0wgmvb4bv66q5wb5f3p38fvym4c1"; depends=[BH ggplot2 MASS Matrix Rcpp RcppEigen rstan rstantools StanHeaders]; };
   mogsa = derive2 { name="mogsa"; version="1.15.0"; sha256="02a9p3awa8lix75ghw8x0nm9dzccg57ydyg1hr5kxx3bq51lvj3v"; depends=[Biobase BiocGenerics cluster corpcor genefilter gplots graphite GSEABase svd]; };
   monocle = derive2 { name="monocle"; version="2.9.0"; sha256="15m4221g6m5r8w3af9qk8jxqnqjjj31xvfcxi2n7dhfvqw4f35a1"; depends=[Biobase BiocGenerics biocViews cluster combinat DDRTree densityClust dplyr fastICA ggplot2 HSMMSingleCell igraph irlba limma MASS Matrix matrixStats pheatmap plyr proxy qlcMatrix RANN Rcpp reshape2 Rtsne slam stringr tibble VGAM viridis]; };
   mosaics = derive2 { name="mosaics"; version="2.19.0"; sha256="1d5b7rhxzzzlyapfq4fmml8k41fpha2bw398jzq6xsk52wfjjbiv"; depends=[GenomeInfoDb GenomicAlignments GenomicRanges IRanges lattice MASS Rcpp Rsamtools S4Vectors]; };
   motifRG = derive2 { name="motifRG"; version="1.25.0"; sha256="0ramq5yk9ri04waj16vgcvr8jgd93afn2q8yr4avzaq9a1klsh7a"; depends=[Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 IRanges seqLogo XVector]; };
-  motifStack = derive2 { name="motifStack"; version="1.25.0"; sha256="0ry64xf3gsiapickxzhbh9sn4yhwnvg9vqxv6wrj565wl284zd1h"; depends=[ade4 Biostrings grImport htmlwidgets MotIV scales XML]; };
-  motifbreakR = derive2 { name="motifbreakR"; version="1.11.0"; sha256="1kaadjkcvdm1i8cpnz4qfyiwiffd0h61wx8mwa4x1xqyiwj5s04y"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr TFMPvalue VariantAnnotation]; };
-  motifcounter = derive2 { name="motifcounter"; version="1.5.2"; sha256="0cs9cp09r6k63ap131ir13hcswipwshdzy2gg562v8yrnysvv96p"; depends=[Biostrings]; };
+  motifStack = derive2 { name="motifStack"; version="1.25.3"; sha256="1qvillm4aflyws82gi6sk6wd8f0zpnm0srgv420l0plmiv9v8gaj"; depends=[ade4 Biostrings grImport htmlwidgets MotIV scales XML]; };
+  motifbreakR = derive2 { name="motifbreakR"; version="1.11.1"; sha256="1mpwxh7yigxplm3pczmqczqbs9nbfz1f5jpl4j5wkgcxh634s42l"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges grImport Gviz IRanges matrixStats MotifDb motifStack rtracklayer S4Vectors stringr TFMPvalue VariantAnnotation]; };
+  motifcounter = derive2 { name="motifcounter"; version="1.5.5"; sha256="1zf3sgl3d8wazbd673bmns3fx5r3ppbzlgrms3z2svzh9997z4gc"; depends=[Biostrings]; };
   motifmatchr = derive2 { name="motifmatchr"; version="1.3.0"; sha256="0p1v2nbxw889ck8jsvw0qkxqxnpzqvha2k64r9f8xg2d06pfr7ya"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp RcppArmadillo Rsamtools S4Vectors SummarizedExperiment TFBSTools]; };
   mpra = derive2 { name="mpra"; version="1.3.0"; sha256="1bh73npgphq2xanx9sc9yz0dpcilcvwnwz030fpy2mvaipnrqpjc"; depends=[BiocGenerics limma S4Vectors scales statmod SummarizedExperiment]; };
-  msPurity = derive2 { name="msPurity"; version="1.7.1"; sha256="0jf1r0p2v20g87lirzi956vkrzm25px9q47pbjfw3k2hf4k97pwp"; depends=[DBI doSNOW fastcluster foreach ggplot2 mzR plyr Rcpp reshape2 RSQLite stringr]; };
-  msa = derive2 { name="msa"; version="1.13.0"; sha256="0z2haqbz22q1zxmks570vky1a1i101pscq2ryi50aj78g4k87ad1"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; };
+  msPurity = derive2 { name="msPurity"; version="1.7.2"; sha256="018gawlqn1syhhqmg9dbdzxg2knrp4vwqpbbazdayxk8adsr4ak2"; depends=[DBI doSNOW fastcluster foreach ggplot2 mzR plyr Rcpp reshape2 RSQLite stringr]; };
+  msa = derive2 { name="msa"; version="1.13.1"; sha256="0fcs489fmx6vhdmqmksqwlakg1a9cn44s9mbdcjqkx15lhcqaa9r"; depends=[BiocGenerics Biostrings IRanges Rcpp S4Vectors]; };
   msgbsR = derive2 { name="msgbsR"; version="1.5.0"; sha256="1hlpg3zd4w514f1p0c36jsgg0dlirmnw1fq5l734yabgbf6zkv3l"; depends=[BSgenome easyRNASeq edgeR GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 IRanges plyr R_utils Rsamtools S4Vectors SummarizedExperiment]; };
   msmsEDA = derive2 { name="msmsEDA"; version="1.19.0"; sha256="0xni6k9ij49zzxlhnbhn6v0nij49m26cxyv6xdlwfp0jh37390gk"; depends=[gplots MASS MSnbase RColorBrewer]; };
   msmsTests = derive2 { name="msmsTests"; version="1.19.0"; sha256="1kz9s9dc4rxz77k743ql6j84h2hv8fkbwl7707gqfs5789gj7w41"; depends=[edgeR msmsEDA MSnbase qvalue]; };
-  multiClust = derive2 { name="multiClust"; version="1.11.3"; sha256="0gjn9pl685pkl2yv6dbkdqr9hc3pcl39fk2h3nrd1irl7gf7isrw"; depends=[amap cluster ctc dendextend mclust survival]; };
-  multiMiR = derive2 { name="multiMiR"; version="1.3.0"; sha256="1zhpsipbcm1hqcc75nf0xjfm6v4nqc8bgp9pgj1v5q4ni8vffzsf"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; };
-  multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.5.0"; sha256="1z750jwpvcl679ikzlcyy0yrifx13abxy8wigsxwrbc4wcljqyqw"; depends=[doParallel foreach SummarizedExperiment]; };
+  multiClust = derive2 { name="multiClust"; version="1.11.6"; sha256="1g5zxy0x3fipmdiw3dkwzjnrni9r7rcqc71jilq0jfr8z52h5kik"; depends=[amap cluster ctc dendextend mclust survival]; };
+  multiHiCcompare = derive2 { name="multiHiCcompare"; version="0.99.46"; sha256="0f2h2xdprarri4x19jvac9irm7gba2x1dhaab1r6pl6hkkmasi01"; depends=[BiocParallel BLMA data_table dplyr edgeR GenomeInfoDb GenomeInfoDbData GenomicRanges HiCcompare metap pbapply pheatmap qqman]; };
+  multiMiR = derive2 { name="multiMiR"; version="1.3.2"; sha256="19my81w8q1zva7p1k7wbjr69x3bmqwwkz2phmfmb6gaa2361gn6l"; depends=[AnnotationDbi BiocGenerics dplyr purrr RCurl tibble XML]; };
+  multiOmicsViz = derive2 { name="multiOmicsViz"; version="1.5.1"; sha256="0zjp90z00dmd6k96ffmb1iljzf22asij7m90lj764z2xskii9nz0"; depends=[doParallel foreach SummarizedExperiment]; };
   multiscan = derive2 { name="multiscan"; version="1.41.0"; sha256="08s4rpikrjzhip9zpb5dc0fi98hj304qlcvxm1agi881awlvpkig"; depends=[Biobase]; };
   multtest = derive2 { name="multtest"; version="2.37.0"; sha256="1xlizjdzvxn0i9gs1jpkb07fkkx1prrr1v5n6kfvff9izh40cx6j"; depends=[Biobase BiocGenerics MASS survival]; };
   muscle = derive2 { name="muscle"; version="3.23.0"; sha256="110wvrf2isiw2by15vkxsds5sxy68l1vav8fq55f5f8lx77450yp"; depends=[Biostrings]; };
-  myvariant = derive2 { name="myvariant"; version="1.11.0"; sha256="14mskpia58g17ydcv2d535kslj0fwm8rm0n4mv1qm0rff81v5hn3"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; };
+  mygene = derive2 { name="mygene"; version="1.17.2"; sha256="1fi43b84q73kfyq6dincnkx7glhzxw8c42vy63k2j19dqygzc0k7"; depends=[GenomicFeatures Hmisc httr jsonlite plyr S4Vectors sqldf]; };
+  myvariant = derive2 { name="myvariant"; version="1.11.1"; sha256="0p4wan3cwmag2nnxza6zqc3rvidgcg6xdk3aqp1d40v1vyxd4j8c"; depends=[GenomeInfoDb Hmisc httr jsonlite magrittr plyr S4Vectors VariantAnnotation]; };
   mzID = derive2 { name="mzID"; version="1.19.0"; sha256="0czwvilzp756qfyjzf6x4wskg7w35zwl3df3md4p03v95c1ynbdk"; depends=[doParallel foreach iterators plyr ProtGenerics XML]; };
-  mzR = derive2 { name="mzR"; version="2.15.1"; sha256="0m9q5ja326wz7cjmd6b1lvkhjggg5mlw8mxaqa90fs4qz6cr8hw6"; depends=[Biobase BiocGenerics ProtGenerics Rcpp Rhdf5lib zlibbioc]; };
+  mzR = derive2 { name="mzR"; version="2.15.5"; sha256="1kbnxini43zw1mvmbv15ms1na4d2piirzqq79w3d45a4dsdyjkkq"; depends=[Biobase BiocGenerics ncdf4 ProtGenerics Rcpp Rhdf5lib zlibbioc]; };
   ncdfFlow = derive2 { name="ncdfFlow"; version="2.27.0"; sha256="0m29ncb8i4xndialy9x8iagyvamiacq6jvdbl8v9m0f18ygv9y81"; depends=[BH Biobase BiocGenerics flowCore flowViz Rcpp RcppArmadillo Rhdf5lib zlibbioc]; };
-  ndexr = derive2 { name="ndexr"; version="1.3.0"; sha256="0558086vrjiliwpjyvwszy5dimq4p39x3gwiywx7jdjlzgwcv44q"; depends=[httr igraph jsonlite plyr tidyr]; };
+  ndexr = derive2 { name="ndexr"; version="1.3.1"; sha256="1nann1ndc6zy04inb4ag7axi5hl407xr7v283lad1gvqmhrjnzii"; depends=[httr igraph jsonlite plyr tidyr]; };
   nem = derive2 { name="nem"; version="2.55.0"; sha256="0y0yp1bq3ixkxdqjx4lbx5h1yfx2vsia2zpqnjjvp9hzqjddvvbl"; depends=[boot e1071 graph limma plotrix RBGL RColorBrewer Rgraphviz statmod]; };
-  netReg = derive2 { name="netReg"; version="1.5.0"; sha256="15dzz0068s38rxp0vjz9ssa09575xw5nggxl86r2zxcmb93x3yng"; depends=[Rcpp RcppArmadillo]; };
-  netSmooth = derive2 { name="netSmooth"; version="1.1.0"; sha256="1d2mpc9n32aah9dnmwk2bc44c9nq006i4xj79hg7z6cvsxkh67cb"; depends=[cluster clusterExperiment data_table entropy Matrix scater SingleCellExperiment SummarizedExperiment]; };
+  netReg = derive2 { name="netReg"; version="1.5.1"; sha256="0zw8q4dy893jdsjmb3zhy66g8y0w6m9iqvf360bhrnr5kzdfi8ac"; depends=[Rcpp RcppArmadillo]; };
+  netSmooth = derive2 { name="netSmooth"; version="1.1.1"; sha256="0pfqn3wmkmh4wvyy72pvy4f0z3h9vnpnnqp9l1cwgkpwwzlqsk9z"; depends=[cluster clusterExperiment data_table entropy Matrix scater SingleCellExperiment SummarizedExperiment]; };
   netbenchmark = derive2 { name="netbenchmark"; version="1.13.0"; sha256="0ssagk6gwdbrqwc037y05xjbnaiv7k5mq8rmwmx6y3d74jwwpb3d"; depends=[c3net corpcor fdrtool GeneNet GENIE3 grndata Matrix minet PCIT pracma Rcpp]; };
   netbiov = derive2 { name="netbiov"; version="1.15.0"; sha256="1njiy14g8pf4yps4npwsm4x883qgixwvv0f3p2pb69p9r4kg0phy"; depends=[igraph]; };
-  nethet = derive2 { name="nethet"; version="1.13.0"; sha256="0kvwwcwm4hx1r3f24s84pw19vms0aj0bacd79c3r7z26mlmzw7zh"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network parcor]; };
+  nethet = derive2 { name="nethet"; version="1.13.1"; sha256="1rsgm1war7y5hjxcihjjfnha52jphlh3sayh1wmxwxn56cqfnsdr"; depends=[CompQuadForm GeneNet ggm ggplot2 glasso glmnet GSA huge ICSNP limma mclust multtest mvtnorm network parcor]; };
   netprioR = derive2 { name="netprioR"; version="1.7.0"; sha256="076b72g6b9k2zz277i6whjw49jcl6b3bmr9n652nc11d1ydwq3ic"; depends=[doParallel dplyr foreach ggplot2 gridExtra Matrix pROC sparseMVN]; };
   netresponse = derive2 { name="netresponse"; version="1.41.0"; sha256="1spzd74z279rvpw0vpw3bw19gimhcdrcxk6hgxv1w7b0nllih606"; depends=[dmt ggplot2 graph igraph mclust minet plyr qvalue RColorBrewer reshape2 Rgraphviz]; };
   networkBMA = derive2 { name="networkBMA"; version="2.21.0"; sha256="1gax5312r6cz4s1qxxlg8k63dlk4ja8b57c2br1q0kpcdgbwhrqr"; depends=[BH BMA leaps Rcpp RcppArmadillo RcppEigen]; };
   nnNorm = derive2 { name="nnNorm"; version="2.45.0"; sha256="0m8zcv7kyv7ll6bw599nlihmssfizivkrfm1sqr1ndjwmc8b6blp"; depends=[marray nnet]; };
   nondetects = derive2 { name="nondetects"; version="2.11.0"; sha256="0iiwvad8cb3g2a7701vci7g2qkvhc43arw4cw7zpmg46qk6yhvv0"; depends=[arm Biobase HTqPCR limma mvtnorm]; };
   normalize450K = derive2 { name="normalize450K"; version="1.9.0"; sha256="01j9gp2d7b8n30ckf61ywncw0il81lf6d0sfczr39bqdq2x2xyj3"; depends=[Biobase illuminaio quadprog]; };
-  normr = derive2 { name="normr"; version="1.7.1"; sha256="15ajyr38km4fph8np8r171j4f97fwyvy0jcqdbs79gdh792h12sm"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; };
+  normr = derive2 { name="normr"; version="1.7.2"; sha256="16f73sigq43f5fy74zhcz9pzcvd9hra5yzq4fp5sdkhnsnjd0b02"; depends=[bamsignals GenomeInfoDb GenomicRanges IRanges qvalue Rcpp rtracklayer]; };
   npGSEA = derive2 { name="npGSEA"; version="1.17.0"; sha256="0fw33zgrp9wkchddagsd93ijkspi20d8p7yvsqspqrjy3yv6yq3i"; depends=[Biobase BiocGenerics GSEABase]; };
-  nucleR = derive2 { name="nucleR"; version="2.13.0"; sha256="17fndr7wp7i31k3g18chm6nvqmh1di8s0l0v3kp61sn7v4qbfcc8"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; };
+  nuCpos = derive2 { name="nuCpos"; version="0.99.1"; sha256="0p1nijap5a66q9ldh3mqdjg7b29wz1pfixy3zrwhmr05gar5c78y"; depends=[]; };
+  nucleR = derive2 { name="nucleR"; version="2.13.1"; sha256="19y523lg3a2jb9ajqyz0qky292makxmirj9f9244n9xmcm84sm2w"; depends=[Biobase BiocGenerics Biostrings dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges magrittr Rsamtools S4Vectors ShortRead]; };
   nucleoSim = derive2 { name="nucleoSim"; version="1.9.0"; sha256="0bn8gihg4b70gmdyvn91i5adzfbkfaqcb59kv3y56dss04ss736j"; depends=[IRanges S4Vectors]; };
   occugene = derive2 { name="occugene"; version="1.41.0"; sha256="13dqbp1kaan56xqlgfdqrld0l3qwky6487mf9j0g7788yxwl1fnm"; depends=[]; };
   odseq = derive2 { name="odseq"; version="1.9.0"; sha256="0yyg4y77ch7x0f6xa10wnz8kydc2pjrrpbvdc448388acmmbpdbl"; depends=[kebabs mclust msa]; };
-  oligo = derive2 { name="oligo"; version="1.45.0"; sha256="1w36wqry07ml048q55xnckb2mldv4llivsc72b9j5vhn54776n9d"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; };
-  oligoClasses = derive2 { name="oligoClasses"; version="1.43.1"; sha256="14h79m2pq7a5472xh9rvbn5dfr07nczx0iz8g7jc7sji10jp83nd"; depends=[affyio Biobase BiocGenerics BiocInstaller Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; };
-  omicRexposome = derive2 { name="omicRexposome"; version="1.3.0"; sha256="1x18vkfn1m8cwzwdg9lvpbmiprgpy3hs4x9h6jwqavgdnpq8lv60"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma omicade4 PMA SmartSVA stringr SummarizedExperiment sva]; };
+  oligo = derive2 { name="oligo"; version="1.45.2"; sha256="01z9jhnnnnaprpp7zcl4727wkwrhn25djb94fiw7ycb830nqnkxv"; depends=[affxparser affyio Biobase BiocGenerics Biostrings DBI ff oligoClasses preprocessCore RSQLite zlibbioc]; };
+  oligoClasses = derive2 { name="oligoClasses"; version="1.43.3"; sha256="13c7hkbifylm315h4qgqbn9fv5i0742k4rmcjf72ll9wj1yqjzf9"; depends=[affyio Biobase BiocGenerics BiocManager Biostrings DBI ff foreach GenomicRanges IRanges RSQLite S4Vectors SummarizedExperiment]; };
+  omicRexposome = derive2 { name="omicRexposome"; version="1.3.1"; sha256="14dqybpgj57avgsmjhf63lcy5n8r4g77idlpnblkqj0c232mpq6v"; depends=[Biobase ggplot2 ggrepel gridExtra isva limma MultiDataSet omicade4 PMA rexposome SmartSVA stringr SummarizedExperiment sva]; };
   omicade4 = derive2 { name="omicade4"; version="1.21.0"; sha256="055jnv8m9fhj2hixbc997mqv56p07azg40k8qb91mdc8fidypka6"; depends=[ade4 made4]; };
-  omicplotR = derive2 { name="omicplotR"; version="1.1.2"; sha256="0myr943y0dvpyh75sjc41cj9i77psmy7j60vl3y4daqd9vbgpkws"; depends=[ALDEx2 compositions knitr matrixStats rmarkdown shiny vegan zCompositions]; };
+  omicplotR = derive2 { name="omicplotR"; version="1.1.4"; sha256="0d2jhnjhxl2kl8s33fl45v2yyb85gjx9api8qwhpiny4bh12rq3q"; depends=[ALDEx2 compositions knitr matrixStats rmarkdown shiny vegan zCompositions]; };
   omicsPrint = derive2 { name="omicsPrint"; version="1.1.0"; sha256="0zsx8zabz07jyfl1xj28ak6k69jfrrig38psl7qny82ydz8bnbas"; depends=[MASS matrixStats MultiAssayExperiment RaggedExperiment SummarizedExperiment]; };
   oncomix = derive2 { name="oncomix"; version="1.3.0"; sha256="0rpwkksxakhwhqvir646gj0x8b1nqsnc2cvjzvh0mlxvv4zmmc0n"; depends=[ggplot2 ggrepel mclust RColorBrewer SummarizedExperiment]; };
-  oneSENSE = derive2 { name="oneSENSE"; version="1.3.0"; sha256="1krimcp6p2m6ls7vkkyfpacjxmg8fa1shwjw5cl2nvcgbn391k15"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; };
+  oneSENSE = derive2 { name="oneSENSE"; version="1.3.1"; sha256="15790wlbw8ff752lqipmib5mq1chq1wvrrq6yj5zargdv4lffrik"; depends=[flowCore gplots plotly Rtsne scatterplot3d shiny shinyFiles webshot]; };
   onlineFDR = derive2 { name="onlineFDR"; version="0.99.7"; sha256="18naq5jfds1njalqqsi6b1hs2sld55flnv63s8yk2cnhpjcfyq47"; depends=[]; };
-  ontoProc = derive2 { name="ontoProc"; version="1.3.1"; sha256="0hh9rha7b5y3hnahmk1mkmwi22bdrjnm6r7fym2lpgdaihs3b43z"; depends=[AnnotationDbi Biobase ontologyIndex S4Vectors shiny]; };
-  openCyto = derive2 { name="openCyto"; version="1.19.1"; sha256="1i8n1yzrnmbl0h6ykqj9hl30nml8nvlvz4b975w1jh5sp21x0gcv"; depends=[Biobase clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; };
-  openPrimeR = derive2 { name="openPrimeR"; version="1.3.0"; sha256="0sq1f9ir2n9rrxa10cjwfsk1rwmi0aryd31z9zb9i5hciinv99gy"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr uniqtag XML]; };
-  openPrimeRui = derive2 { name="openPrimeRui"; version="1.3.0"; sha256="08ysqxf6dl5rsbxgfv6z9llxclmqn2gwf775r3py0x49sx4ra2hn"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; };
-  oposSOM = derive2 { name="oposSOM"; version="1.19.1"; sha256="16rnwlay7m6y4cf9333bq7zwnp5lcy1i1p23zl0mcvzlb9mam4j1"; depends=[ape arules Biobase biomaRt fastICA fdrtool igraph pixmap scatterplot3d som tsne]; };
-  oppar = derive2 { name="oppar"; version="1.9.0"; sha256="0j26hqskvfv8qb13kmi4dcg3ylzxgwxl4xn4chvi5k8svli4r2qw"; depends=[Biobase GSEABase GSVA]; };
-  pRolocGUI = derive2 { name="pRolocGUI"; version="1.15.0"; sha256="0vrpylrnl02abj6akcp0fb06fk18k42xv78g5f4cyy2jqdgqgijq"; depends=[Biobase dplyr DT ggplot2 MSnbase scales shiny]; };
+  ontoProc = derive2 { name="ontoProc"; version="1.3.5"; sha256="0xv0hin8khcpyj6dxnadncy62isdixjgaq8m1n8i49b0f368bgji"; depends=[AnnotationDbi Biobase ontologyIndex S4Vectors shiny]; };
+  openCyto = derive2 { name="openCyto"; version="1.19.2"; sha256="0m2lalpd9hn1vn62n6lfz4kflfdq188m5vcxdjmlj7wzkxijdcmw"; depends=[Biobase BiocGenerics clue data_table flowClust flowCore flowStats flowViz flowWorkspace graph gtools ks lattice MASS ncdfFlow plyr R_utils RBGL RColorBrewer Rcpp rrcov]; };
+  openPrimeR = derive2 { name="openPrimeR"; version="1.3.2"; sha256="0fc12pzp2b7ns1k039v43ns1d10k9lmww6pjrgvyxhrwdd16b9vn"; depends=[ape BiocGenerics Biostrings DECIPHER digest distr distrEx dplyr fitdistrplus foreach GenomicRanges ggplot2 Hmisc IRanges lpSolveAPI magrittr openxlsx plyr RColorBrewer reshape2 S4Vectors scales seqinr stringdist stringr tinytex uniqtag XML]; };
+  openPrimeRui = derive2 { name="openPrimeRui"; version="1.3.1"; sha256="10hky16l94bx0n3r12kq8951wjcm30kgp8qciqgji563kjq9lbww"; depends=[DT openPrimeR rmarkdown shiny shinyBS shinyjs]; };
+  oposSOM = derive2 { name="oposSOM"; version="1.99.0"; sha256="1k85a2ixnxzclfaw5is9myppmb3slpyd6n1jyg67y0ii6zac2aig"; depends=[ape Biobase biomaRt fastICA fdrtool igraph pixmap Rcpp RcppParallel scatterplot3d tsne]; };
+  oppar = derive2 { name="oppar"; version="1.9.1"; sha256="0irzz17xd1vf5syqzr8sp2rv7076xi64mr2anwp63xfx2xh02wrp"; depends=[Biobase GSEABase GSVA]; };
+  pRoloc = derive2 { name="pRoloc"; version="1.21.9"; sha256="11l2jssdrg3lz0svnjskk280xlkyzfymfhkq13517zv6jshn23gl"; depends=[Biobase BiocGenerics BiocParallel biomaRt caret class coda dendextend e1071 FNN ggplot2 gtools hexbin kernlab knitr LaplacesDemon lattice MASS mclust mixtools MLInterfaces MSnbase mvtnorm nnet plyr proxy randomForest RColorBrewer Rcpp RcppArmadillo sampling scales]; };
+  pRolocGUI = derive2 { name="pRolocGUI"; version="1.15.2"; sha256="0yljbianwqb214g47s9s5s80sfiay6vxrgkzciibyr0bmn7bmrmb"; depends=[Biobase dplyr DT ggplot2 MSnbase pRoloc scales shiny]; };
   paircompviz = derive2 { name="paircompviz"; version="1.19.0"; sha256="1glli54k00gpm04p177hwgsdq352ypc7r8swbksk18j8xghk8cq4"; depends=[Rgraphviz]; };
   pandaR = derive2 { name="pandaR"; version="1.13.0"; sha256="13mv40jsclngfzcapscw0wxv67dd2ym4kkpcvy2v03z37ak3n1fk"; depends=[Biobase BiocGenerics ggplot2 hexbin igraph matrixStats plyr reshape RUnit]; };
-  panelcn_mops = derive2 { name="panelcn.mops"; version="1.3.0"; sha256="17d8ms86xvhqprwazi3cnv3sxyaxmammkf3dczka78i0dwl0p0df"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; };
+  panelcn_mops = derive2 { name="panelcn.mops"; version="1.3.1"; sha256="13p3rrmkjv58f3hac26bxgwrknx6bhdhxkg2c4z1yxh9jny96h9a"; depends=[cn_mops GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors]; };
   panp = derive2 { name="panp"; version="1.51.0"; sha256="1yrxsjc0r9z0nfgbc9n9p5mhqhyx7x76v7vcjah6hdv4svi78csc"; depends=[affy Biobase]; };
   parglms = derive2 { name="parglms"; version="1.13.3"; sha256="0x8j7ffz8h7303n90v27wcb71x75m7j1rq4yz59iv9fpis16yj27"; depends=[BatchJobs BiocGenerics doParallel foreach]; };
-  parody = derive2 { name="parody"; version="1.39.0"; sha256="0lkv6csikcm2jw70gz3bkzjzj48w8dlx1gfc0sh5l49q2szn3fha"; depends=[]; };
+  parody = derive2 { name="parody"; version="1.39.1"; sha256="0213vnj1mbnc9zhrxidqjz5ls8nrgz7ljmz0f9hrbixn2k369ccl"; depends=[]; };
   pathRender = derive2 { name="pathRender"; version="1.49.0"; sha256="1ln36h3jy35398r92i5hm4qvcjfsmc0frpy4dpgi75ab1wgjzb1s"; depends=[AnnotationDbi cMAP graph RColorBrewer Rgraphviz]; };
   pathVar = derive2 { name="pathVar"; version="1.11.2"; sha256="1v0pia06qx995b9y4vllp844f5846877zyl587xz5026mnbr5p5l"; depends=[data_table EMT ggplot2 gridExtra Matching mclust]; };
   pathifier = derive2 { name="pathifier"; version="1.19.0"; sha256="0sazl4wi6pivvr2r098parc8j68hq8apfjb0nk6vicfisx0dqk1h"; depends=[princurve R_oo]; };
   pathprint = derive2 { name="pathprint"; version="1.11.3"; sha256="14x9i2gkra49aqnpi0xd94430nl05sw3yr85ramaxrzavm7lxvsf"; depends=[]; };
-  pathview = derive2 { name="pathview"; version="1.21.0"; sha256="0s8mq51gknca91qgy4q7fmgm4ga251w214f3zapc7zlxykb2qrys"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; };
-  paxtoolsr = derive2 { name="paxtoolsr"; version="1.15.0"; sha256="1fr6w5jbhj5rdsb53cafzsdn23b2rfcyyi6ivcfvn408x59cg3fg"; depends=[data_table httr igraph jsonlite plyr R_utils rJava rjson XML]; };
+  pathview = derive2 { name="pathview"; version="1.21.2"; sha256="14021aqb36s56w9j439ydgbv2b4yk7sbsndrmyzbdxrisi6q3xyw"; depends=[AnnotationDbi graph KEGGgraph KEGGREST org_Hs_eg_db png Rgraphviz XML]; };
+  paxtoolsr = derive2 { name="paxtoolsr"; version="1.15.1"; sha256="13rc66d9fyd85haylmc55irvshrfrxgny3l539ga1zq4h6bhlxz6"; depends=[httr igraph jsonlite plyr R_utils readr rJava rjson XML]; };
   pbcmc = derive2 { name="pbcmc"; version="1.9.0"; sha256="1hxhpxixl5jfpiqpwqvkfcnp2k7sw43asc5ikj6qpl4p5xrrfn0d"; depends=[Biobase BiocGenerics BiocParallel cowplot genefu ggplot2 gridExtra limma reshape2]; };
-  pcaExplorer = derive2 { name="pcaExplorer"; version="2.7.0"; sha256="138a6qrg0cqq5n5565i5y4fzlbk79hjk11ziz8hh2dxbymv1h9mq"; depends=[AnnotationDbi biomaRt d3heatmap DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats IRanges knitr limma NMF pheatmap plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; };
-  pcaGoPromoter = derive2 { name="pcaGoPromoter"; version="1.25.0"; sha256="10c08lawhg1p7jydk2bb5z6rjn7pjrfr069s06syababq75j1pnw"; depends=[AnnotationDbi Biostrings ellipse]; };
-  pcaMethods = derive2 { name="pcaMethods"; version="1.73.0"; sha256="0k079s8fwqhwk5hmbl0rqi52nav2dzbbsilnn2a2x92c2rzfiqc0"; depends=[Biobase BiocGenerics MASS Rcpp]; };
+  pcaExplorer = derive2 { name="pcaExplorer"; version="2.7.6"; sha256="0dwhd5ybli05wlv8j0l639phbksm0h9g418bdq2x9f7h1vskr3z5"; depends=[AnnotationDbi biomaRt d3heatmap DESeq2 DT genefilter GenomicRanges ggplot2 ggrepel GO_db GOstats IRanges knitr limma NMF pheatmap plyr rmarkdown S4Vectors scales shiny shinyAce shinyBS shinydashboard SummarizedExperiment threejs tidyr topGO]; };
+  pcaGoPromoter = derive2 { name="pcaGoPromoter"; version="1.25.1"; sha256="1dfvd3bb7v5dz58icb7j802fj358waa6xs8sasz0kvlvapma9kx1"; depends=[AnnotationDbi Biostrings ellipse]; };
+  pcaMethods = derive2 { name="pcaMethods"; version="1.73.1"; sha256="0vslvglp2j6zkkbjcwj66bbv683qzjnqlpa8adb8wmgc2l4a1rkv"; depends=[Biobase BiocGenerics MASS Rcpp]; };
   pcot2 = derive2 { name="pcot2"; version="1.49.0"; sha256="0ffg35602h7k904dq47sgnfyky041alnypaf3gvx7m6f8yszq46c"; depends=[amap Biobase]; };
-  pcxn = derive2 { name="pcxn"; version="2.3.0"; sha256="1d7maq8vbxcs1bvz4qlc29583nbfq6jpan0gsqday51xj7ngqbcs"; depends=[pcxnData pheatmap]; };
+  pcxn = derive2 { name="pcxn"; version="2.3.1"; sha256="0yp9hfbval7ind2nqa2n4nfafgbrfr4gq7hm7dkrfampp7if66j3"; depends=[pcxnData pheatmap]; };
   pdInfoBuilder = derive2 { name="pdInfoBuilder"; version="1.45.0"; sha256="15whr6rjdf75z6wg9k8zsyvfn08vidimzx2rw6ki1zmbh0fz8in6"; depends=[affxparser Biobase BiocGenerics Biostrings DBI IRanges oligo oligoClasses RSQLite S4Vectors]; };
   pepStat = derive2 { name="pepStat"; version="1.15.0"; sha256="08dpwiphw9s8dafy4m946jxi1jfyc3lzzdg4h0ax7d6knzq0za73"; depends=[Biobase data_table fields GenomicRanges ggplot2 IRanges limma plyr]; };
   pepXMLTab = derive2 { name="pepXMLTab"; version="1.15.0"; sha256="1bwp82zvg65yrhlx1xk2jci9fqsgc83h1x7124ci2afzlvx56ms5"; depends=[XML]; };
   perturbatr = derive2 { name="perturbatr"; version="1.1.0"; sha256="0cwk2f0bm9vlgdngb9blcpcwg2gl8ik0rdx0a6i36qzdd256qk91"; depends=[assertthat diffusr doParallel dplyr foreach formula_tools ggplot2 igraph lazyeval lme4 magrittr rlang scales tibble tidyr]; };
-  pgca = derive2 { name="pgca"; version="1.5.0"; sha256="1scxcrfs8b0rw38c0v569dnq2b5viqvm3ckjwm1gzqgxcjy6r324"; depends=[]; };
-  phantasus = derive2 { name="phantasus"; version="1.1.2"; sha256="1g4q9ff11i7xfw29g9mqwqvr1py4mwwddd0yr1dhw92abbc5w2z4"; depends=[assertthat Biobase fgsea GEOquery ggplot2 htmltools httpuv httr jsonlite limma opencpu protolite rhdf5 Rook stringr svglite]; };
+  pgca = derive2 { name="pgca"; version="1.5.1"; sha256="11la42gqiqxwlms84lc1dsvpys3bmrzwz5d8vcx4xwnl9pc3lqhh"; depends=[]; };
+  phantasus = derive2 { name="phantasus"; version="1.1.5"; sha256="148mxhmc0qymjdkx64ji4karaazx89vmwmyrrk8d1g7m3lj1qpvl"; depends=[assertthat Biobase ccaPP fgsea GEOquery ggplot2 gtable htmltools httpuv httr jsonlite limma Matrix Matrix_utils opencpu pheatmap protolite rhdf5 Rook scales stringr svglite]; };
   phenoTest = derive2 { name="phenoTest"; version="1.29.0"; sha256="10mw83ivb99ipndjjc5r69wpsanfvzx01bfpzhq5pygjzhl6m8jb"; depends=[annotate AnnotationDbi Biobase biomaRt BMA Category ellipse genefilter ggplot2 gplots GSEABase Heatplus hgu133a_db Hmisc hopach HTSanalyzeR limma mgcv SNPchip survival xtable]; };
   phenopath = derive2 { name="phenopath"; version="1.5.0"; sha256="05a1d7apyhg4d4nahl97i0794fji6dnnd454wfww89adjx68nfnc"; depends=[dplyr ggplot2 Rcpp SummarizedExperiment tibble tidyr]; };
-  philr = derive2 { name="philr"; version="1.7.0"; sha256="165k6cnj08lpkw66zljiqqwfy1knd2n46mg734d0fiy72j2va4z2"; depends=[ape ggplot2 ggtree phangorn tidyr]; };
-  phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.5.0"; sha256="0m9lgg1wcyy3ppxvmkgdv5ccz48j5mw1fsxg21vw08hpm6fm9y60"; depends=[matrixStats plyr]; };
-  phyloseq = derive2 { name="phyloseq"; version="1.25.0"; sha256="1344gil3dsnvy92fsp91wvh6j1rd7xzjjapmjkvdz5rjs5rh0kd2"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; };
-  piano = derive2 { name="piano"; version="1.21.0"; sha256="1d7gld59bryzcvnvl6x8wx3v1wji58rs4zszsqpyz73qmw8ikw0d"; depends=[Biobase BiocGenerics fgsea gplots igraph marray relations]; };
+  philr = derive2 { name="philr"; version="1.7.3"; sha256="1nzn6xv5kkm1babdimhvcjd5ql58hhj772asjd1i6r4qbidzyjfd"; depends=[ape ggplot2 ggtree phangorn tidyr]; };
+  phosphonormalizer = derive2 { name="phosphonormalizer"; version="1.5.1"; sha256="1bvbjm42nr1mjxixbcd39g4qz4171qrb7x7ssz5jkrf8y3j26yxa"; depends=[matrixStats plyr]; };
+  phyloseq = derive2 { name="phyloseq"; version="1.25.3"; sha256="081f1fwkda6am9i64y2zq8z6xiz9z7hfz3agrlxkfrrfc455ch65"; depends=[ade4 ape Biobase BiocGenerics biomformat Biostrings cluster data_table foreach ggplot2 igraph multtest plyr reshape2 scales vegan]; };
+  piano = derive2 { name="piano"; version="1.21.1"; sha256="1adwsk3vkdg3695yjfw6sip1ww8zfd90dmmbzsf1kryidlkl60nz"; depends=[Biobase BiocGenerics fgsea gplots igraph marray relations]; };
   pickgene = derive2 { name="pickgene"; version="1.53.0"; sha256="1nklcgm3wryljq22hc3fcja6x2kwa9bilp76gzhy8zpj8swwjszl"; depends=[MASS]; };
   pint = derive2 { name="pint"; version="1.31.0"; sha256="10kwlp947h03w8xqcs9qcyp21wvx60sl47k2cnbrdhva3wf35vp3"; depends=[dmt Matrix mvtnorm]; };
-  pkgDepTools = derive2 { name="pkgDepTools"; version="1.47.1"; sha256="08wc5qklyddz5p237q75dipvykiksdr17xcd2qkfzj3138wfkgvy"; depends=[graph RBGL]; };
+  pkgDepTools = derive2 { name="pkgDepTools"; version="1.47.2"; sha256="12bc56a5l3p9mdi15ryinicvyyzv58qwprksixjwm54mx42r5kw2"; depends=[graph RBGL]; };
   plateCore = derive2 { name="plateCore"; version="1.39.0"; sha256="0vf42ms3vky8n2n7x16kc284252zifjmch32lsww0lmsxv0h857n"; depends=[Biobase flowCore flowStats flowViz lattice latticeExtra MASS robustbase]; };
-  plethy = derive2 { name="plethy"; version="1.19.0"; sha256="05v123qrpasl11kivp1p2ib0v638yi4y19gk4df8mfald95nxcmn"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; };
+  plethy = derive2 { name="plethy"; version="1.19.1"; sha256="0pmrryxkxpgrb8c4pr25ajfn3v6m53810xz9da1j3hnyk9l42ha7"; depends=[Biobase BiocGenerics DBI ggplot2 IRanges plyr RColorBrewer reshape2 RSQLite S4Vectors Streamer]; };
   plgem = derive2 { name="plgem"; version="1.53.0"; sha256="04hwkr3v126mildi76jfr5b8s8lly9z60iydh5i3dc5zsyd6h84f"; depends=[Biobase MASS]; };
   plier = derive2 { name="plier"; version="1.51.0"; sha256="1m7bwaypnaw7kk756k0wl6xi3s0j9awi986lpa8ncjv587q0442h"; depends=[affy Biobase]; };
+  plotGrouper = derive2 { name="plotGrouper"; version="0.99.43"; sha256="1b36ay09h0fx3kcyiw1pd48750b6slqzidw8g2bvjpgw2i03f4ww"; depends=[colourpicker dplyr egg ggplot2 ggpubr gridExtra gtable Hmisc magrittr readr readxl rlang scales shiny shinythemes stringr tibble tidyr]; };
   plrs = derive2 { name="plrs"; version="1.21.0"; sha256="18k3xad3gmkw74klyvqzbvnlr1pq93is6dqxm2bxb4cmzar12f6k"; depends=[Biobase BiocGenerics CGHbase ic_infer marray quadprog Rcsdp]; };
   plw = derive2 { name="plw"; version="1.41.0"; sha256="0q9dwj7rznhdj1h34ygnw0snfswnr8ycx0927jzsiiycz31n8z0f"; depends=[affy MASS]; };
-  plyranges = derive2 { name="plyranges"; version="1.1.8"; sha256="10p0i8q229gy0z3fg90m3xaib32v9w1zxcmn3gb87ipz9mic8ykk"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyr tidyselect]; };
+  plyranges = derive2 { name="plyranges"; version="1.1.10"; sha256="0q9dsgnflr9gly3x4kbvr8ambfz5k5mvgn6hj9qyyb2vy6viqvni"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges IRanges magrittr rlang Rsamtools rtracklayer S4Vectors tidyr tidyselect]; };
   pmm = derive2 { name="pmm"; version="1.13.0"; sha256="0p0xnkz6hgnpvai7947861kw5hmjwwf3zj2y423whdr7x2lpdayw"; depends=[lme4]; };
-  podkat = derive2 { name="podkat"; version="1.13.0"; sha256="1h297id3gxix06xmhqkl1lc5gfp4vi8jkfh2gpld4bw233fvi6h5"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; };
+  podkat = derive2 { name="podkat"; version="1.13.1"; sha256="0brp4d5y0708yv1b2jylywp4j7fknxy5vayss5jr9xp82sbahagz"; depends=[Biobase BiocGenerics Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges Matrix Rcpp Rsamtools]; };
   pogos = derive2 { name="pogos"; version="1.1.0"; sha256="1135bxxhamcxs5hn6hq43hc7s7cr9v0jy2884dz7f9qvgnrqhymi"; depends=[ggplot2 httr ontoProc rjson S4Vectors shiny]; };
-  polyester = derive2 { name="polyester"; version="1.17.0"; sha256="0dz73jsyx3yivpmxz7p1q14i2rvj388bq53d7w1mz3ixrqilzgz2"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; };
-  powerTCR = derive2 { name="powerTCR"; version="1.1.1"; sha256="0427r8qwy8j3z2mpvka2b6y2k39nwiy86gb06njs6m19f597936v"; depends=[cubature evmix magrittr purrr tcR truncdist VGAM]; };
+  polyester = derive2 { name="polyester"; version="1.17.2"; sha256="1f2vd15qfkbka9pi88n61mrsmxx7pnl88aiarm5ahy4nmdv3fyrq"; depends=[Biostrings IRanges limma logspline S4Vectors zlibbioc]; };
+  powerTCR = derive2 { name="powerTCR"; version="1.1.4"; sha256="0zf2ip194y5ad7xzzkplv1lbilpns2l78flf8snrvi14n8588gjj"; depends=[cubature doParallel evmix foreach magrittr purrr tcR truncdist vegan VGAM]; };
   ppiStats = derive2 { name="ppiStats"; version="1.47.0"; sha256="0prrs1g99g55i993689c6s497crijnl96z2qzgga1y9w4zbf6g88"; depends=[Biobase Category graph lattice ppiData RColorBrewer ScISI]; };
-  pqsfinder = derive2 { name="pqsfinder"; version="1.9.0"; sha256="1igg500dvwq1lvxyl0c8fcdkgpmxzsxcd6c24pz0dhjqsaxml2as"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; };
+  pqsfinder = derive2 { name="pqsfinder"; version="1.9.2"; sha256="1hj0mx9ii7rxjcwn8mg2ywhlzpf4ckwxf8w9ms7fkj7kk37r9wy1"; depends=[BH Biostrings GenomicRanges IRanges Rcpp S4Vectors]; };
   prada = derive2 { name="prada"; version="1.57.0"; sha256="0isj6w4lzfsqwwzs3njddabn2xznjqhp0bbihwfvc31kiya9k8di"; depends=[Biobase BiocGenerics MASS RColorBrewer rrcov]; };
-  prebs = derive2 { name="prebs"; version="1.21.0"; sha256="0q5ibq492jw8axp50qijn0fsa5qxarxnlxz4s8hv3ql6rjlsiw8v"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; };
+  prebs = derive2 { name="prebs"; version="1.21.3"; sha256="0gqgl5sqsn92b5rck85nn4ri5b6mzvgyk13n9dp5qa0hxvdifhx4"; depends=[affy Biobase GenomeInfoDb GenomicAlignments GenomicRanges IRanges RPA S4Vectors]; };
   predictionet = derive2 { name="predictionet"; version="1.27.0"; sha256="0ls88pw7k1vy3qjzl91dj6kfbkgvz67448zhj1b3g308b33qasqk"; depends=[catnet igraph MASS penalized RBGL]; };
   preprocessCore = derive2 { name="preprocessCore"; version="1.43.0"; sha256="13859ip42jk6j6ngs8bwkzfarrqzd0jzhq9kdgsnicl9kf9k9vj6"; depends=[]; };
+  primirTSS = derive2 { name="primirTSS"; version="0.99.29"; sha256="17d2x3y5iiz0r840d8adkb7lypdyhp76izxbkj42b89rqsfm5v2j"; depends=[BiocGenerics Biostrings BSgenome_Hsapiens_UCSC_hg38 dplyr GenomicRanges GenomicScores Gviz IRanges JASPAR2018 phastCons100way_UCSC_hg38 purrr R_utils rtracklayer S4Vectors shiny stringr TFBSTools tibble tidyr]; };
   proBAMr = derive2 { name="proBAMr"; version="1.15.0"; sha256="1cl1ns7m1d1n3ayhga7f45xrjx9cy2a8l9xs2z7x3074kx8h8xxg"; depends=[AnnotationDbi Biostrings GenomicFeatures GenomicRanges IRanges rtracklayer]; };
   proFIA = derive2 { name="proFIA"; version="1.7.0"; sha256="1qx79xamr77rjdfr50ms0dzrmwqwc2fzd24k2njbknxvz8kay5is"; depends=[Biobase BiocParallel minpack_lm missForest pracma ropls xcms]; };
-  procoil = derive2 { name="procoil"; version="2.9.0"; sha256="048wkmsidcw31mqjli2vspkf332ddx74dd709xbw5bkggw5l5a0b"; depends=[Biostrings kebabs S4Vectors]; };
+  procoil = derive2 { name="procoil"; version="2.9.1"; sha256="1dhb7aphl93rxqk2k3fx8nrwgbd07wckrfx44c72fq0biam5qi5j"; depends=[Biostrings kebabs S4Vectors]; };
   profileScoreDist = derive2 { name="profileScoreDist"; version="1.9.0"; sha256="1jv9szg451ljggx458sgcgiaf1p6i7sin62lhbh6b8jn1s4h7qrw"; depends=[BiocGenerics Rcpp]; };
   progeny = derive2 { name="progeny"; version="1.3.0"; sha256="0rini10n59yzyq7bzckbyxvvl2lgj35k4dzm72lx47cws8nlqyl0"; depends=[Biobase]; };
-  prot2D = derive2 { name="prot2D"; version="1.19.0"; sha256="1aawirq8plgdrz88yzzqh3p1m8y17ygf2l3a433lzrm3ffz6y3qx"; depends=[Biobase fdrtool impute limma MASS Mulcom qvalue samr st]; };
-  proteinProfiles = derive2 { name="proteinProfiles"; version="1.21.0"; sha256="0zvgf4zmx42idyy8c6zfmf4gv22gxpyw1bs8285d9bfjk7qpvgwc"; depends=[]; };
+  prot2D = derive2 { name="prot2D"; version="1.19.1"; sha256="141f38lcvrm0nirghx31gr3qzfq3q5zmqvvzcf5071s60hhm3syb"; depends=[Biobase fdrtool impute limma MASS Mulcom qvalue samr st]; };
+  proteinProfiles = derive2 { name="proteinProfiles"; version="1.21.1"; sha256="1s35xglin78hv8f83jzi1racvklmnpf3gyjqxl60fj2i8b2r27dz"; depends=[]; };
   proteoQC = derive2 { name="proteoQC"; version="1.17.0"; sha256="17a6wmkxr8jfb7nbwykfc562fgj4p8addq5idajag2ijaiycvzz5"; depends=[dplyr ggplot2 MSnbase Nozzle_R1 plotly plyr reshape2 rmarkdown rpx rTANDEM seqinr tidyr VennDiagram XML]; };
   psichomics = derive2 { name="psichomics"; version="1.7.0"; sha256="0vj20pw305p4i08s7kxj0np1xxi8mhdlasagypc76ysnlhq0w6bn"; depends=[AnnotationHub cluster colourpicker data_table digest dplyr DT edgeR fastICA fastmatch ggplot2 ggrepel highcharter htmltools httr jsonlite limma miscTools pairsD3 plyr R_utils Rcpp shiny shinyBS shinyjs stringr survival XML xtable]; };
-  psygenet2r = derive2 { name="psygenet2r"; version="1.13.0"; sha256="0hpipknbcg3ic6sr19ksy1zs71h2kk3p1bvvhqy4xirajzqf3z41"; depends=[BgeeDB Biobase BiocInstaller biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; };
-  puma = derive2 { name="puma"; version="3.23.0"; sha256="1h299ach0bff17az4vfa7dbb9x8z3b32mfmg322afpmfvj3xdqa7"; depends=[affy affyio Biobase mclust oligo oligoClasses]; };
-  pvac = derive2 { name="pvac"; version="1.29.0"; sha256="0ax1pndxw4knhas0cp54b9gyr3xjl6rriyif1sccmqrszswkdv06"; depends=[affy Biobase]; };
-  pvca = derive2 { name="pvca"; version="1.21.0"; sha256="0ayi9f2zd5f3c96w8kfb68nmd6idbg1l19h0ys1zdjgzz1dkqqc2"; depends=[Biobase lme4 Matrix vsn]; };
+  psygenet2r = derive2 { name="psygenet2r"; version="1.13.3"; sha256="0ldyrzhxw7m146yfm5fjr917g089f0mnhddinsqmd7h5pykhidb2"; depends=[BgeeDB Biobase BiocManager biomaRt ggplot2 GO_db igraph labeling RCurl reshape2 stringr topGO]; };
+  puma = derive2 { name="puma"; version="3.23.3"; sha256="0jk8696hna14c261ni1xpi5klfpgzjci9yd62nkqfvf3pynl12a9"; depends=[affy affyio Biobase mclust oligo oligoClasses]; };
+  pvac = derive2 { name="pvac"; version="1.29.2"; sha256="087bmn6snyvw7z3j3xzga31rq4w81fxx46c54drapz6pfjmc0gzy"; depends=[affy Biobase]; };
+  pvca = derive2 { name="pvca"; version="1.21.1"; sha256="0j2hqix5ih462rr5mpxav8whvkvng3v497qiznb7nlv20p6swgbi"; depends=[Biobase lme4 Matrix vsn]; };
   pwOmics = derive2 { name="pwOmics"; version="1.13.0"; sha256="0y4jsybxd6bcv9hqa25zij5lsbh55790njdy0p383pywbsn2dwvs"; depends=[AnnotationDbi AnnotationHub Biobase BiocGenerics biomaRt data_table GenomicRanges gplots graph igraph rBiopaxParser STRINGdb]; };
-  qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="0.99.9"; sha256="0kaa1y5m150b3c6chpkadcj5l446kjq2hhvwf17n1gn58gzmbalv"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr GenomicRanges ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer statmod stringr tibble tidyr]; };
-  qcmetrics = derive2 { name="qcmetrics"; version="1.19.0"; sha256="1m2q9lhvk9yicsn5anw88hvs3jg7wqfm9vhm1g43hbgjbqy4jzqj"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; };
+  qPLEXanalyzer = derive2 { name="qPLEXanalyzer"; version="0.99.12"; sha256="11q97nx0yss8w69jvq58mw34lma700rzkkkxs0qlga4hijjkm3v7"; depends=[assertthat Biobase BiocGenerics Biostrings dplyr GenomicRanges ggdendro ggplot2 IRanges limma magrittr MSnbase preprocessCore purrr RColorBrewer statmod stringr tibble tidyr]; };
+  qcmetrics = derive2 { name="qcmetrics"; version="1.19.2"; sha256="043ybq0ykry2r5xh2gv76lbg16723zsflic930q12hc1pxncxa8m"; depends=[Biobase knitr Nozzle_R1 pander S4Vectors xtable]; };
   qpcrNorm = derive2 { name="qpcrNorm"; version="1.39.0"; sha256="18h58d58c0hs804n0xzsn0ydp4xw5cvab447zxq50g4adajjf7r8"; depends=[affy Biobase limma]; };
-  qpgraph = derive2 { name="qpgraph"; version="2.15.0"; sha256="1q6lrhxq4zra6x3wx3ikc70np8yqz8b6hzgdiy4fxx6b4kjcpnd3"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; };
+  qpgraph = derive2 { name="qpgraph"; version="2.15.2"; sha256="0lw5wfcw9br8k4wr70vp9xqgfjhbnzhjxfw4hzyp9z9h54vb9fay"; depends=[annotate AnnotationDbi Biobase BiocParallel GenomeInfoDb GenomicFeatures GenomicRanges graph IRanges Matrix mvtnorm qtl Rgraphviz S4Vectors]; };
   qrqc = derive2 { name="qrqc"; version="1.35.0"; sha256="1mcb7gpncr91lq95vmbf6skjm5hxqlzx25inac3zwj3j4q07ipnk"; depends=[Biostrings biovizBase brew ggplot2 plyr reshape Rsamtools testthat xtable]; };
-  qsea = derive2 { name="qsea"; version="1.7.3"; sha256="11icpr1x374r77kn7fdlys37m8q6xi7g84gnn6m0wdx7srla3aal"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; };
-  quantro = derive2 { name="quantro"; version="1.15.0"; sha256="1r9q1kmql8fgdnljgb17simjkfdm14nn0fxmrh09ijg8640bdis4"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; };
+  qsea = derive2 { name="qsea"; version="1.7.4"; sha256="1rnm4f9skig9p8i0qz9nrfm6vxnjgi67s8r2665c3c87j52r4gga"; depends=[BiocGenerics BiocParallel Biostrings BSgenome GenomeInfoDb GenomicRanges gtools HMMcopy IRanges limma Rsamtools rtracklayer zoo]; };
+  quantro = derive2 { name="quantro"; version="1.15.2"; sha256="0lf3d17b9d5gszpjknzhc5s2k8m31f8qf4k8y2lsrs7kaqr0skq0"; depends=[Biobase doParallel foreach ggplot2 iterators minfi RColorBrewer]; };
   quantsmooth = derive2 { name="quantsmooth"; version="1.47.0"; sha256="1w2gwaxy90s6laghgdhxqb0c0s93ci8g61zbrn7xjpd6af1vz1md"; depends=[quantreg]; };
-  qusage = derive2 { name="qusage"; version="2.15.0"; sha256="025xjbaw1mkvh0wa656l851f1c2m4sjxqb6xvjks3fz4bwlrk2xr"; depends=[Biobase limma lsmeans nlme]; };
+  qusage = derive2 { name="qusage"; version="2.15.1"; sha256="03fxcg63mlxkc3m3pj5y828spk42h3f5h8l9zcfjmf93qacal6s7"; depends=[Biobase limma lsmeans nlme]; };
   qvalue = derive2 { name="qvalue"; version="2.13.0"; sha256="1g6lfgn73z68imy6qmh9s1zyniaq1wyx8jyllrk4lxpgk17i5dgh"; depends=[ggplot2 reshape2]; };
   r3Cseq = derive2 { name="r3Cseq"; version="1.27.0"; sha256="13cswnxp8ikv95xb3szn7br7xm5ml3mpj365vxhaky2s1x9kxr9p"; depends=[Biostrings data_table GenomeInfoDb GenomicRanges IRanges qvalue RColorBrewer Rsamtools rtracklayer sqldf VGAM]; };
-  rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.21.0"; sha256="0bgxw31ivqmzykxhrnzrswf39kxp7sj9kpi4fz8pxggjwnb59pfl"; depends=[data_table XML]; };
+  rBiopaxParser = derive2 { name="rBiopaxParser"; version="2.21.1"; sha256="15lzqw4frw59scwarzcncp1a75xaf274bfy17ypwq0y7fnvqvlh5"; depends=[data_table XML]; };
   rCGH = derive2 { name="rCGH"; version="1.11.2"; sha256="10284xrdqh0pbn8a3ibwr2znf3lajnimli93lrhs4d60cna8wp9n"; depends=[aCGH affy AnnotationDbi DNAcopy GenomeInfoDb GenomicFeatures GenomicRanges ggplot2 IRanges lattice limma mclust org_Hs_eg_db plyr shiny TxDb_Hsapiens_UCSC_hg18_knownGene TxDb_Hsapiens_UCSC_hg19_knownGene TxDb_Hsapiens_UCSC_hg38_knownGene]; };
-  rDGIdb = derive2 { name="rDGIdb"; version="1.7.0"; sha256="12c3ly2x1wc9ry514vzks20drv8q1r19sflhpnwhbc00lmh13s1k"; depends=[httr jsonlite]; };
+  rDGIdb = derive2 { name="rDGIdb"; version="1.7.1"; sha256="195z5zifd48sq96rx9ayijfpqbrs5rygjsgjm42h4zylm2niasxi"; depends=[httr jsonlite]; };
   rGADEM = derive2 { name="rGADEM"; version="2.29.0"; sha256="1bqzmawhz1m00zcbnvznxzvak5f1b65xalr7sgas2sbrd77lvrhr"; depends=[Biostrings BSgenome IRanges seqLogo]; };
-  rGREAT = derive2 { name="rGREAT"; version="1.13.2"; sha256="18cfmvcmk60shrg2pd2qwi1s5679sbrv846vac2py29f6c7gq5zl"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; };
+  rGREAT = derive2 { name="rGREAT"; version="1.13.3"; sha256="0fkcv2nz674i66yd3x34ba3897sdq96c1cns2kj7hjnv92l88qv3"; depends=[GenomicRanges GetoptLong IRanges RCurl rjson]; };
   rHVDM = derive2 { name="rHVDM"; version="1.47.0"; sha256="1y8dkws06j7jh6rnlq3y91bn5wy8fn2ha224mmvx4qchp6y9xcxd"; depends=[affy Biobase minpack_lm R2HTML]; };
   rMAT = derive2 { name="rMAT"; version="3.31.0"; sha256="0d2hn2jjs6c5xjwf6w0m9v53bb9mfpqvmms5vnzhwh6z3jankavm"; depends=[affxparser Biobase BiocGenerics IRanges]; };
   rRDP = derive2 { name="rRDP"; version="1.15.1"; sha256="0m00070c87za48a4in8bqzb3l77177jqys2ya6wv6xylmfig899j"; depends=[Biostrings]; };
@@ -1372,102 +1461,106 @@ in with self; {
   rTANDEM = derive2 { name="rTANDEM"; version="1.21.0"; sha256="1n7yaycgh5822j119si8i66yn0asg1mz9a9g7idiyvj8gpq54fv5"; depends=[data_table Rcpp XML]; };
   rTRM = derive2 { name="rTRM"; version="1.19.0"; sha256="1x8gbrn4b80v52isxg8a5rhkwijnlx649xyipnj206ky6ihzd3hc"; depends=[AnnotationDbi DBI igraph RSQLite]; };
   rTRMui = derive2 { name="rTRMui"; version="1.19.0"; sha256="0gw5yx609nzk8r8qc7q9zgkfs32s79d8v1zpw2njcb5d6figs7b1"; depends=[MotifDb org_Hs_eg_db org_Mm_eg_db rTRM shiny]; };
-  rWikiPathways = derive2 { name="rWikiPathways"; version="1.1.0"; sha256="0vcqrcg90npn3rmwkywnf0qnjwxw491mn0xrski70yyij2lylckg"; depends=[caTools httr RJSONIO]; };
+  rWikiPathways = derive2 { name="rWikiPathways"; version="1.1.7"; sha256="180pfczj66sm1a7g7r4ykl0qv8bncq7gqp0vf6hr39jmi985shin"; depends=[caTools httr RJSONIO]; };
   rain = derive2 { name="rain"; version="1.15.0"; sha256="0zrxh7bmc9x9rh6zbb0zmv3nvz6l7hqq21h4gh3rzzyjy79vw3aj"; depends=[gmp multtest]; };
   rama = derive2 { name="rama"; version="1.55.0"; sha256="0kmp25yw86vqxf43br2j75svvaprz97s5nvnxxjxbjwiigbjla7h"; depends=[]; };
-  ramwas = derive2 { name="ramwas"; version="1.5.0"; sha256="0g794y9xawkrfcylasjjv123rlsz1yfrdl89nrr4i99jfw7innw2"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; };
+  ramwas = derive2 { name="ramwas"; version="1.5.1"; sha256="1ixis62wpg0mzrzirgyfmp3k4kglsnw0vhgd1n4mvwa3v49vlbgi"; depends=[BiocGenerics biomaRt Biostrings digest filematrix GenomicAlignments glmnet KernSmooth Rsamtools]; };
   randPack = derive2 { name="randPack"; version="1.27.0"; sha256="0s7460iz01vmkf4a8g3vn6hrfx94bp5mihfyjkcv46nd9p3k6af5"; depends=[Biobase]; };
   rbsurv = derive2 { name="rbsurv"; version="2.39.0"; sha256="08lh9hn97sc0rx9vmkd977kpijs6gqa6r89my7afsvmkm8v7n7ls"; depends=[Biobase survival]; };
-  rcellminer = derive2 { name="rcellminer"; version="2.3.0"; sha256="0rm5azbpyfsdaqxmip7wyw8f5apwac8s6n6cm0sqdwwsslm5dsl4"; depends=[Biobase fingerprint ggplot2 gplots rcdk rcellminerData shiny stringr]; };
-  readat = derive2 { name="readat"; version="1.7.0"; sha256="186hx7r5gvybvp1f6yzpi515b7hsv3a6il02hwpr8y1xdx3408nv"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_sets assertive_types Biobase data_table dplyr magrittr openxlsx pathological reshape2 stringi SummarizedExperiment testthat tidyr]; };
+  rcellminer = derive2 { name="rcellminer"; version="2.3.2"; sha256="0fmg98pcv20gx5c4cbcdcs2cd1a84sg29xld5c7sa76i60ajy6ij"; depends=[Biobase fingerprint ggplot2 gplots rcdk rcellminerData shiny stringr]; };
+  readat = derive2 { name="readat"; version="1.7.2"; sha256="0wskar887f6hyrp7p69z50kilwz0kb2d1f6rllbkgrchlh3zn53g"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_sets assertive_types Biobase data_table dplyr magrittr openxlsx pathological reshape2 stringi SummarizedExperiment testthat tidyr]; };
   reb = derive2 { name="reb"; version="1.59.0"; sha256="0sdlhx64sh55waxj47hz9kfb6bvxrw4ycyzj5cycr1w3sk2idszc"; depends=[Biobase idiogram]; };
-  recount = derive2 { name="recount"; version="1.7.2"; sha256="17cymdrkr9aiszv98qfsy7das1ain2g0g8q4f8ik7bk868ahsaj2"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; };
-  recoup = derive2 { name="recoup"; version="1.9.0"; sha256="0z13mj7b5hywp5mbk0faq01k7d1mpnz2b9633h75hkh04w5260n9"; depends=[BiocGenerics biomaRt circlize ComplexHeatmap GenomicAlignments GenomicRanges ggplot2 plyr rtracklayer]; };
-  regionReport = derive2 { name="regionReport"; version="1.15.1"; sha256="12mbpblgg0lf3kixi1isx92jkxxcnifhwq03ipgigrkd0iv9s7q6"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitcitations knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; };
-  regioneR = derive2 { name="regioneR"; version="1.13.0"; sha256="0iy118hy66d7wina49sh7xwi0akx9hp7k98gwfjc0bpwdj7gs1h9"; depends=[BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; };
-  regsplice = derive2 { name="regsplice"; version="1.7.0"; sha256="1gl5isfrqi0xyb4mdv7j6sb8ah4mzmwkaal1kcphjsrj8g46ba80"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; };
-  restfulSE = derive2 { name="restfulSE"; version="1.3.1"; sha256="02jq9gjf7z70ny1bmywx39igxm29nkmc6qv1acy81gxxpsr8naih"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; };
+  recount = derive2 { name="recount"; version="1.7.6"; sha256="03gk0h8aqzky7q1jgmn4f27cm18602m5nqbql9nyfxpbdpy9gdwb"; depends=[BiocParallel derfinder downloader GenomeInfoDb GenomicRanges GEOquery IRanges RCurl rentrez rtracklayer S4Vectors SummarizedExperiment]; };
+  recoup = derive2 { name="recoup"; version="1.9.2"; sha256="0c6zd42xr7068yfnsag8xfjix83m3wa3s8fsc2dv5fz2gnmhbfm2"; depends=[BiocGenerics biomaRt circlize ComplexHeatmap GenomicAlignments GenomicRanges ggplot2 plyr rtracklayer]; };
+  regionReport = derive2 { name="regionReport"; version="1.15.5"; sha256="02fhvjx5pj5hb3bdmm417rdjd8bzx81icdd8yqc4q7layhjrqb5q"; depends=[BiocStyle DEFormats derfinder DESeq2 GenomeInfoDb GenomicRanges knitcitations knitr knitrBootstrap RefManageR rmarkdown S4Vectors SummarizedExperiment]; };
+  regioneR = derive2 { name="regioneR"; version="1.13.3"; sha256="1rmh4xq596yb8kd411j5h02b6g2rflkwy9a1g38djj7lhzihy2im"; depends=[Biostrings BSgenome GenomeInfoDb GenomicRanges IRanges memoise rtracklayer S4Vectors]; };
+  regsplice = derive2 { name="regsplice"; version="1.7.1"; sha256="07g7jhwsb6yqhjvapr7kyqd8cwvn5jq9nrrf1ywifbf54x0kgzm1"; depends=[edgeR glmnet limma pbapply S4Vectors SummarizedExperiment]; };
+  restfulSE = derive2 { name="restfulSE"; version="1.3.23"; sha256="1cpxkqnffmhj6js1a4y3k85jmrcciw1sih35akj8v6rpv4fsy7xa"; depends=[AnnotationDbi AnnotationHub bigrquery Biobase DBI DelayedArray dplyr ExperimentHub GO_db magrittr reshape2 rhdf5client rlang S4Vectors SummarizedExperiment]; };
+  rexposome = derive2 { name="rexposome"; version="1.3.4"; sha256="0w5w4agdphrv935y3415hcrbgsxw27yk7h1xrjl5vk1ymkrj767z"; depends=[Biobase circlize corrplot FactoMineR ggplot2 ggrepel glmnet gplots gridExtra gtools Hmisc imputeLCMD lme4 lsr mice pryr reshape2 S4Vectors scales scatterplot3d stringr]; };
   rfPred = derive2 { name="rfPred"; version="1.19.0"; sha256="0xnb68s8iw01cnxma5iqyfki4f30i4if7kxc9p0i8w1nv3jf28xj"; depends=[data_table GenomicRanges IRanges Rsamtools]; };
   rgsepd = derive2 { name="rgsepd"; version="1.13.0"; sha256="128dqx7qzs9pf7ffxn94g8krkyryhcvj4wq9m1mdfj024yl4s04i"; depends=[AnnotationDbi biomaRt DESeq2 GO_db goseq gplots hash org_Hs_eg_db SummarizedExperiment]; };
-  rhdf5 = derive2 { name="rhdf5"; version="2.25.4"; sha256="129jzsqfswv6vhvfypqm9wcsnm94blq2zmjcp78c1vcjxc2i4li6"; depends=[Rhdf5lib]; };
-  rhdf5client = derive2 { name="rhdf5client"; version="1.3.3"; sha256="0iyhqsnfr7c9z7zk80i6i15f7sqkb28nakjxccldhn0g8xkaavq9"; depends=[DelayedArray httr rjson S4Vectors]; };
+  rhdf5 = derive2 { name="rhdf5"; version="2.25.11"; sha256="02xa4pc743k7q523p8x9njzqk8j0zv5kmprx5srnmrr1r1m4am8g"; depends=[Rhdf5lib]; };
+  rhdf5client = derive2 { name="rhdf5client"; version="1.3.13"; sha256="0pcppacx3n1pr67amd5y7r25sm2w9k8vhxn8k8v66ndp08i0pd9b"; depends=[DelayedArray httr R6 rjson S4Vectors]; };
   riboSeqR = derive2 { name="riboSeqR"; version="1.15.0"; sha256="0cwf51cish38slfv3cqfn4rqjs8k9wwwph0n4w7wd4dh7c9p2rmn"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools seqLogo]; };
   rnaSeqMap = derive2 { name="rnaSeqMap"; version="2.39.0"; sha256="07q9dblld6ns943ppjdl1xlbzhg3yvxci8v1x2kbifqwlvv2lzs6"; depends=[Biobase DBI DESeq edgeR GenomicAlignments GenomicRanges IRanges Rsamtools]; };
   rnaseqcomp = derive2 { name="rnaseqcomp"; version="1.11.0"; sha256="0r1n74x5xbp264ap9xsndiich89cv2140whi6ax179dpjs57ikaa"; depends=[RColorBrewer]; };
   roar = derive2 { name="roar"; version="1.17.0"; sha256="09wmsfn4lqzj8ffqlf5z9npx4v0y3bpvxrm6b5rggc3prlq9m4qb"; depends=[BiocGenerics GenomeInfoDb GenomicAlignments GenomicRanges IRanges rtracklayer S4Vectors SummarizedExperiment]; };
-  rols = derive2 { name="rols"; version="2.9.1"; sha256="0lzwl32zd61cj57ndxs9y74bclfpwl7s590a81cj99kidz6sx0c3"; depends=[Biobase BiocGenerics httr jsonlite progress]; };
-  ropls = derive2 { name="ropls"; version="1.13.6"; sha256="1gbjnpm5phimfgg2qfav04wc4aabvinj8gxirw9f6gp1wra0kbyr"; depends=[Biobase]; };
-  rpx = derive2 { name="rpx"; version="1.17.0"; sha256="0h5s2dwnpn7qqk5wk7128agdh9av9jzxhix4xrl0nhdd3jzi202y"; depends=[RCurl xml2]; };
-  rqt = derive2 { name="rqt"; version="1.7.0"; sha256="1iai2g1k7ybdlmw4r9k2zqdqq58ayggzs0gzdrn1bxmgp83v87fv"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; };
+  rols = derive2 { name="rols"; version="2.9.4"; sha256="15qvqv3gi33ihdh0nlqqrv7raqs8g5hskaz2gk4pw0v24bzh1579"; depends=[Biobase BiocGenerics httr jsonlite progress]; };
+  ropls = derive2 { name="ropls"; version="1.13.8"; sha256="1ryxjnpd7q0pwi8sd2ha3jlfwkk6v4cqz2751bv952k8c9mldna7"; depends=[Biobase]; };
+  rpx = derive2 { name="rpx"; version="1.17.2"; sha256="0h0y31bi5f9z64ilcsgx1bj52qwfh1rv9ar00v3xkgx0zax5aw2m"; depends=[RCurl xml2]; };
+  rqt = derive2 { name="rqt"; version="1.7.2"; sha256="1nnacv0vgf9y3abrph04hmibjm08bmhi32ik7vrbr5pv5bbmdhrn"; depends=[car CompQuadForm glmnet Matrix metap pls ropls RUnit SummarizedExperiment]; };
   rqubic = derive2 { name="rqubic"; version="1.27.0"; sha256="06pp8ha9va9hkr5s7dmw6xsxs55sv0cn9vwysja0n4hdbbh5fx9v"; depends=[biclust Biobase BiocGenerics]; };
   rsbml = derive2 { name="rsbml"; version="2.39.0"; sha256="0ch87r9v7yxxqab81n99silsi6am7vwf1fzg43jg8x5726yz4pip"; depends=[BiocGenerics graph]; };
-  rtracklayer = derive2 { name="rtracklayer"; version="1.41.3"; sha256="1z8g303smfg3c3rax3c9fx4017fy9ch5sbvqsiincykigjsrn21b"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; };
-  runibic = derive2 { name="runibic"; version="1.3.1"; sha256="1l1rywk4lhgssmysd8998gd1wr5ms08s2s8skq2ss6qcxp1qrnvi"; depends=[biclust Rcpp SummarizedExperiment testthat]; };
+  rtracklayer = derive2 { name="rtracklayer"; version="1.41.8"; sha256="029qzy68il0mn7bkjhqdainl93a6v6k044ihgg5mndyhhhadjv03"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicAlignments GenomicRanges IRanges RCurl Rsamtools S4Vectors XML XVector zlibbioc]; };
+  runibic = derive2 { name="runibic"; version="1.3.3"; sha256="038afzgh06f908m1rlr0v58vfgm97q3shd174772k9rllzqr0q0j"; depends=[biclust Rcpp SummarizedExperiment testthat]; };
   sRAP = derive2 { name="sRAP"; version="1.21.0"; sha256="1mfailybmpa5ikc372qcfp57rnsksv6kn4x48bf6c0g5vln2kpjh"; depends=[gplots pls qvalue ROCR WriteXLS]; };
   sSeq = derive2 { name="sSeq"; version="1.19.0"; sha256="19d7xj3bqvvlxl23i08ab8ja53342nzi658a1f7xzf7khgp58fg9"; depends=[caTools RColorBrewer]; };
   safe = derive2 { name="safe"; version="3.21.0"; sha256="12h9d3dradnnkmhxz94d1b191q6xvx74nvp9y9y46yla7rxqpzma"; depends=[AnnotationDbi Biobase SparseM]; };
   sagenhaft = derive2 { name="sagenhaft"; version="1.51.0"; sha256="0mvj275rrqvz53fsv48c5gd3lzxmwh036353bmw7jswb1mrrv5qz"; depends=[SparseM]; };
-  samExploreR = derive2 { name="samExploreR"; version="1.5.0"; sha256="1gnlrkvyzw36m3da67vz7g8cfrrk4lg0yg2b9svhf3rjhfq6sjvv"; depends=[edgeR ggplot2 RNAseqData_HNRNPC_bam_chr14 Rsubread]; };
-  sampleClassifier = derive2 { name="sampleClassifier"; version="1.5.0"; sha256="08lr8b0dg489mfiljnpqdryflim8m902b66fl8qkkn5hm842dm22"; depends=[annotate e1071 ggplot2 MGFM MGFR]; };
+  samExploreR = derive2 { name="samExploreR"; version="1.5.1"; sha256="1qzi9vn2hj9ph23mf8v0m6m587qisqvp0fmvkavxm8v3y07mcnpk"; depends=[edgeR ggplot2 RNAseqData_HNRNPC_bam_chr14 Rsubread]; };
+  sampleClassifier = derive2 { name="sampleClassifier"; version="1.5.1"; sha256="1a4y3nnibjkv51i0m1qpj8mb675r9gz9zdpyra18c19ga245bwih"; depends=[annotate e1071 ggplot2 MGFM MGFR]; };
   sangerseqR = derive2 { name="sangerseqR"; version="1.17.0"; sha256="02v0khp8dksvj8h0p3py5cdxwgbla9hv60mrj6ay2d6yyv2w0vz6"; depends=[Biostrings shiny]; };
   sapFinder = derive2 { name="sapFinder"; version="1.19.0"; sha256="0f0k3afijnj0h6bh46cnkm3gajdsvngamcw2q5xbdrafidrk6npm"; depends=[pheatmap Rcpp rTANDEM]; };
   savR = derive2 { name="savR"; version="1.19.0"; sha256="1lzlrpv244pnwmf3347r7l5vwz0cd4hlm9nvlpdlvv8glvf7v4ay"; depends=[ggplot2 gridExtra reshape2 scales XML]; };
   scDD = derive2 { name="scDD"; version="1.5.0"; sha256="1s2a4nz3ys4vllk9dphwskqrw2bb9shkqx4bismprn0b7qcmnv9j"; depends=[arm BiocParallel EBSeq fields ggplot2 mclust outliers S4Vectors scran SingleCellExperiment SummarizedExperiment]; };
-  scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.1.0"; sha256="0d4rrrk4fdrnrf7rdqwz915sg7m81w0fzfrrnjzpsncpwzkqa1pg"; depends=[dplyr ggplot2 magrittr rlang tibble]; };
-  scPipe = derive2 { name="scPipe"; version="1.3.7"; sha256="1gvpkcxjal81r5vh4f16ll9p0nj70iyp8gp5c9rkg2pr0p28ryx3"; depends=[AnnotationDbi BiocGenerics biomaRt GGally ggplot2 MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib robustbase S4Vectors scales SingleCellExperiment SummarizedExperiment testthat zlibbioc]; };
-  scater = derive2 { name="scater"; version="1.9.6"; sha256="0yxw73fvxyvq99lnpwp4j4mf2jy6zkyw934ql2y2avbnyclj4id5"; depends=[beachmat Biobase BiocGenerics data_table DelayedArray DelayedMatrixStats dplyr ggbeeswarm ggplot2 limma Matrix plyr Rcpp reshape2 rhdf5 Rhdf5lib rjson S4Vectors SingleCellExperiment SummarizedExperiment tximport viridis]; };
+  scFeatureFilter = derive2 { name="scFeatureFilter"; version="1.1.1"; sha256="0xsbyqlflmphrdc0rqbgjyc93fmm2b747wn2lswq24r6g87084cs"; depends=[dplyr ggplot2 magrittr rlang tibble]; };
+  scPipe = derive2 { name="scPipe"; version="1.3.8"; sha256="0c250q77rwcmns0m5px7485axbrflb7xmkrw58fxyzn58i13y3bc"; depends=[AnnotationDbi BiocGenerics biomaRt GGally ggplot2 MASS mclust org_Hs_eg_db org_Mm_eg_db Rcpp reshape Rhtslib robustbase S4Vectors scales SingleCellExperiment SummarizedExperiment testthat zlibbioc]; };
+  scater = derive2 { name="scater"; version="1.9.24"; sha256="062afh547brk3jxjxkyapz66agkdyvsn62ppx1n2qcpbhxlpppnd"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dplyr ggbeeswarm ggplot2 Matrix plyr Rcpp reshape2 Rhdf5lib S4Vectors SingleCellExperiment SummarizedExperiment viridis]; };
   scde = derive2 { name="scde"; version="2.9.0"; sha256="1zmhbjdy9v2v11q261l7gwjm77qpiyqdskgbkcaxf7a65wbzs90r"; depends=[BiocParallel Cairo edgeR extRemes flexmix MASS mgcv nnet pcaMethods quantreg RColorBrewer Rcpp RcppArmadillo rjson RMTstat Rook]; };
   scfind = derive2 { name="scfind"; version="1.3.0"; sha256="08xkvmjd6p6vsnfk7a5y4586b9r3ap7l9ig0g6cd6cj8pjhvf51b"; depends=[bit dplyr hash Rcpp reshape2 SingleCellExperiment SummarizedExperiment]; };
   scmap = derive2 { name="scmap"; version="1.3.0"; sha256="0pnflc49ysq7sxcg0ddcapi65vfjq3zl9pnz119hjr6avp8sjmhy"; depends=[Biobase BiocGenerics dplyr e1071 ggplot2 googleVis matrixStats proxy randomForest Rcpp RcppArmadillo reshape2 S4Vectors SingleCellExperiment SummarizedExperiment]; };
-  scone = derive2 { name="scone"; version="1.5.0"; sha256="0n49j4z48zfrrj7a9nv538vyi5611w5r68rw9w99c28k2n6lvril"; depends=[BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SummarizedExperiment]; };
+  scmeth = derive2 { name="scmeth"; version="1.1.8"; sha256="1fkf2pxbnhl992cql5nd73qq0kqzhvhl8g7rjfyx2zlfnb0a2m22"; depends=[AnnotationHub annotatr Biostrings BSgenome bsseq DelayedArray DT GenomeInfoDb GenomicRanges HDF5Array knitr reshape2 rmarkdown SummarizedExperiment]; };
+  scone = derive2 { name="scone"; version="1.5.1"; sha256="0sqnwq34ixlpaq8zrpqjwvpfx985yzyc7wdymfkwfy2ysclrcbn6"; depends=[aroma_light BiocParallel boot class cluster compositions diptest edgeR fpc gplots hexbin limma matrixStats mixtools rARPACK RColorBrewer rhdf5 RUVSeq SummarizedExperiment]; };
   scoreInvHap = derive2 { name="scoreInvHap"; version="1.3.1"; sha256="1nysi4blc9rxfsq4kwyyq9nbzdww7xfwgrcw8czvnfca59dbfgdq"; depends=[BiocParallel Biostrings GenomicRanges snpStats SummarizedExperiment VariantAnnotation]; };
-  scran = derive2 { name="scran"; version="1.9.10"; sha256="1c55i0iq6dfhxdmnps440d0i1lsidj2wx0v2a476lks4hi32bwsf"; depends=[beachmat BiocGenerics BiocParallel DelayedArray DelayedMatrixStats dynamicTreeCut edgeR igraph kmknn limma Matrix Rcpp Rhdf5lib S4Vectors scater SingleCellExperiment statmod SummarizedExperiment]; };
+  scran = derive2 { name="scran"; version="1.9.39"; sha256="174s3jymh8w1gbaq60m4lwhk038bfzrwva2a8xry3ampns818a6b"; depends=[beachmat BiocGenerics BiocNeighbors BiocParallel DelayedArray DelayedMatrixStats dynamicTreeCut edgeR igraph limma Matrix Rcpp Rhdf5lib S4Vectors scater SingleCellExperiment statmod SummarizedExperiment]; };
+  scruff = derive2 { name="scruff"; version="0.99.39"; sha256="1za3d79p6cm19m3xqwbfgvrnfhjrr3j54s5vqhaaxxxvj9xbpv06"; depends=[AnnotationDbi BiocGenerics BiocParallel Biostrings data_table GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggbio ggplot2 ggthemes plyr refGenome Rsamtools S4Vectors scales ShortRead SingleCellExperiment stringdist SummarizedExperiment]; };
   scsR = derive2 { name="scsR"; version="1.17.0"; sha256="1ppw53nl05rfs7jkgr464pa24yrczlvh7yfgmn5apd3yxbmf9i9w"; depends=[BiocGenerics Biostrings ggplot2 hash IRanges plyr RColorBrewer sqldf STRINGdb]; };
-  segmentSeq = derive2 { name="segmentSeq"; version="2.15.0"; sha256="07cm7314vjhsara5ngs3j0gi7fjbdvn51r6s7ifxm6vij43ivpqs"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; };
-  semisup = derive2 { name="semisup"; version="1.5.1"; sha256="170x6s5q1lja64p4ldpravlaal8vs7rzqk8lyvrydsg02ss7vj7h"; depends=[SummarizedExperiment VGAM]; };
-  seq2pathway = derive2 { name="seq2pathway"; version="1.13.0"; sha256="03gbim70cnym2ga6zynj67r9ad1j4hrgydzzsi8r1nykkmjlk5lj"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; };
-  seqCAT = derive2 { name="seqCAT"; version="1.3.3"; sha256="0s3r550w41x5kdzqjnk2ypp2fn3sd8qn8b85s4h8rdzyc8brp0d8"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges lazyeval S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; };
+  segmentSeq = derive2 { name="segmentSeq"; version="2.15.1"; sha256="10qjyzzi4vr43p66rgpxkm5hlgfpg6s76g19vdyzs8lh0mn4shfw"; depends=[abind baySeq GenomeInfoDb GenomicRanges IRanges Rsamtools S4Vectors ShortRead]; };
+  semisup = derive2 { name="semisup"; version="1.5.3"; sha256="13xmxl1915hk000l2kg120h4cqyw1372j2b92vfz5mn45ngmg99k"; depends=[SummarizedExperiment VGAM]; };
+  seq2pathway = derive2 { name="seq2pathway"; version="1.13.2"; sha256="15fvc4dqn7adl3jsphin60krbm29mbm3w8000plcmk8n5bxdxqvj"; depends=[biomaRt GenomicRanges GSA nnet seq2pathway_data WGCNA]; };
+  seqCAT = derive2 { name="seqCAT"; version="1.3.7"; sha256="10c5y3d63zk6zsyjx38srw73xj03nk7apa2p81z91jwwmva2ab2m"; depends=[dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges lazyeval S4Vectors scales SummarizedExperiment tidyr VariantAnnotation]; };
   seqCNA = derive2 { name="seqCNA"; version="1.27.0"; sha256="03zxkdcvxgjjhciv1w9l9gdj21ljqrw3c9cgkf2pqp3jk0swpaa7"; depends=[adehabitatLT doSNOW GLAD seqCNA_annot]; };
   seqLogo = derive2 { name="seqLogo"; version="1.47.0"; sha256="1hqfgxd7yvh7lm5q3qfhlkiy0pq5ffxls317miivsgid28shwmwk"; depends=[]; };
   seqPattern = derive2 { name="seqPattern"; version="1.13.0"; sha256="1xm7f3z29ahyiiy8586yfy5m4cqalws8hsyp8yc9xybw0mwdpyhg"; depends=[Biostrings GenomicRanges IRanges KernSmooth plotrix]; };
   seqTools = derive2 { name="seqTools"; version="1.15.0"; sha256="0qnj79xhgflhjcrd2n61fmx099q83iil8hy6pq7jzhnzhg4572pj"; depends=[zlibbioc]; };
   seqbias = derive2 { name="seqbias"; version="1.29.0"; sha256="1lv6wcqzlr40jmwac9s07ixx9vyikkc5a8f5wjmip9gglyy7m5f4"; depends=[Biostrings GenomicRanges Rsamtools zlibbioc]; };
   seqcombo = derive2 { name="seqcombo"; version="1.3.0"; sha256="1l4n2472kr4kimf4aq8v5whqwjpzwbkisfrf74wjljdj43903dr2"; depends=[Biostrings cowplot dplyr ggplot2 igraph magrittr rvcheck]; };
-  seqplots = derive2 { name="seqplots"; version="1.19.0"; sha256="1qx7b2jzhprncgff4n88w7kq10hp98a6bcky0lq4z8rjf3ksaph7"; depends=[Biostrings BSgenome class DBI digest DT fields GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix RColorBrewer reshape2 Rsamtools RSQLite rtracklayer S4Vectors shiny]; };
-  seqsetvis = derive2 { name="seqsetvis"; version="1.1.2"; sha256="0az4s9v69b57fnisc5ln827da7cyhx16wwzh5cx8qqhkffzn323s"; depends=[data_table eulerr GenomicRanges ggplot2 IRanges limma png RColorBrewer Rsamtools rtracklayer S4Vectors]; };
-  sesame = derive2 { name="sesame"; version="0.99.3"; sha256="1dz1jx4cmpbis0h3mmk5p7h6ybprsrnvdbzcv6kj0h0q31al2rg9"; depends=[DNAcopy GenomicRanges ggplot2 illuminaio IRanges MASS preprocessCore R6 randomForest sesameData wheatmap]; };
-  sevenC = derive2 { name="sevenC"; version="1.1.0"; sha256="05h05y7nkq73igsv54znawrzav7ijvrzwqsbpw8di43fah1klpg7"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; };
-  sevenbridges = derive2 { name="sevenbridges"; version="1.11.0"; sha256="1c3mj8k5fscj4hcg7rm12zjfp9hbwlp9k83hi8ijq55iw66jp399"; depends=[curl docopt dplyr httr jsonlite miniUI objectProperties rstudioapi S4Vectors shiny stringr uuid yaml]; };
-  shinyMethyl = derive2 { name="shinyMethyl"; version="1.17.0"; sha256="0cs3s08mijpcz598d07as3yl0fcw3x5q6q1lxmq29x36kmfz6yrg"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; };
+  seqplots = derive2 { name="seqplots"; version="1.19.3"; sha256="0drjn6l80xqy3lij4qzg48chrwi0sjhv0xnqgg9m6qyq9xb7hy5l"; depends=[BiocManager Biostrings BSgenome class DBI digest DT fields GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges jsonlite kohonen plotrix RColorBrewer reshape2 Rsamtools RSQLite rtracklayer S4Vectors shiny]; };
+  seqsetvis = derive2 { name="seqsetvis"; version="1.1.7"; sha256="01yd5lbkad79s274yc0byfvi4pp51b8ikrdnrza9r6jffaalzi60"; depends=[data_table eulerr GenomicRanges ggplot2 IRanges limma png RColorBrewer Rsamtools rtracklayer S4Vectors]; };
+  sesame = derive2 { name="sesame"; version="0.99.7"; sha256="19l3cl5202aysf8bahhb4sm53q3x2jlz424ykw9zdf0ab9m3zbnc"; depends=[DNAcopy GenomicRanges ggplot2 illuminaio IRanges MASS preprocessCore R6 randomForest S4Vectors sesameData wheatmap]; };
+  sevenC = derive2 { name="sevenC"; version="1.1.4"; sha256="16x95kb8264r5z55r635lyy13i37jsnyghmn27mw4wj8acdgv6gb"; depends=[BiocGenerics boot data_table GenomeInfoDb GenomicRanges InteractionSet IRanges purrr readr rtracklayer S4Vectors]; };
+  sevenbridges = derive2 { name="sevenbridges"; version="1.11.5"; sha256="07pndfkcx4ixh5sk2hq64r5xzz2b6h26km50dk4pizj03lpcgalr"; depends=[curl docopt dplyr httr jsonlite miniUI objectProperties rstudioapi S4Vectors shiny stringr uuid yaml]; };
+  shinyMethyl = derive2 { name="shinyMethyl"; version="1.17.1"; sha256="18s9m1yxqvpzqaq87c09k5wvjxpxijz6b9gi7nr1b4jxfglkxrdl"; depends=[BiocGenerics IlluminaHumanMethylation450kmanifest matrixStats minfi RColorBrewer shiny]; };
   shinyTANDEM = derive2 { name="shinyTANDEM"; version="1.19.0"; sha256="0yvf4rxpki7xb7f7yckxrm7ycsx2clqn13smc2m7ihdyvg5kw941"; depends=[mixtools rTANDEM shiny xtable]; };
-  sigFeature = derive2 { name="sigFeature"; version="0.99.4"; sha256="011drdrq1pj37jbp8289rws1nmhbyivghbfpkirj6g4wc6pnpghn"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; };
+  sigFeature = derive2 { name="sigFeature"; version="0.99.5"; sha256="08fs7pa4r4gbsg8j1f630lz9b0p4z4cq9r54akv0ix5q1mi71n2p"; depends=[BiocParallel biocViews e1071 Matrix nlme openxlsx pheatmap RColorBrewer SparseM SummarizedExperiment]; };
   sigPathway = derive2 { name="sigPathway"; version="1.49.0"; sha256="0fzqf17xqb0f2af9lz392l656naddann4wsxn233d28dajdvw5rx"; depends=[]; };
   sigaR = derive2 { name="sigaR"; version="1.29.0"; sha256="0lmv6m0rb7pnrqp6gd8klni3vd0rb98xscfx7qb5xpkihqcnya9s"; depends=[Biobase CGHbase corpcor igraph limma marray MASS mvtnorm penalized quadprog snowfall]; };
   siggenes = derive2 { name="siggenes"; version="1.55.0"; sha256="1lfw6ny0s76jcypqin49raz1zrbl1rwds3646c8h52rd37c4hdx0"; depends=[Biobase multtest]; };
-  sights = derive2 { name="sights"; version="1.7.0"; sha256="0ygld23zpqqa7xalbq1kyf6x03kpqbmicr4hrysjk54h3r5pv56y"; depends=[ggplot2 lattice MASS qvalue reshape2]; };
-  signeR = derive2 { name="signeR"; version="1.7.1"; sha256="1xmz6b33n0idby69739mm8frv4l95g8rsdcp98dg6fhpf2s49ky3"; depends=[BiocGenerics Biostrings class GenomicRanges nloptr NMF PMCMR Rcpp RcppArmadillo VariantAnnotation]; };
-  signet = derive2 { name="signet"; version="1.1.0"; sha256="1rdmq4x0xf13hl54f2nbnckz8nci9391g6l00zznv1vzykp6awdm"; depends=[graph igraph RBGL]; };
+  sights = derive2 { name="sights"; version="1.7.1"; sha256="05zny8xlsxzyp9bbv4jlgrpkmy0ppzqf97809ic6myfch547x7gp"; depends=[ggplot2 lattice MASS qvalue reshape2]; };
+  signeR = derive2 { name="signeR"; version="1.7.2"; sha256="1ranfb4kik0k6cpi8zhsnqhvccrlizrkrijcp1yzhhaq5w33xj5b"; depends=[BiocGenerics Biostrings class GenomicRanges nloptr NMF PMCMR Rcpp RcppArmadillo VariantAnnotation]; };
+  signet = derive2 { name="signet"; version="1.1.1"; sha256="0fcrwsimxx9j7m5x7civv9qrlcgnn6dyb7kcblsfxw6lidqhv59n"; depends=[graph igraph RBGL]; };
   sigsquared = derive2 { name="sigsquared"; version="1.13.0"; sha256="11bjd0bq2kf4inkybx7hkf970ma8rhwvagrlwxnxafh8nzw5amn8"; depends=[Biobase survival]; };
   similaRpeak = derive2 { name="similaRpeak"; version="1.13.0"; sha256="1lgs161banaxsi22ydgmw1jpf04h7js92sqzir5v7ms0h12nym15"; depends=[R6]; };
   simpleaffy = derive2 { name="simpleaffy"; version="2.57.0"; sha256="0yc44svjmh2vr1z3a77nvmas7kfcl0p6rjygq6ax477rvzldw7rq"; depends=[affy Biobase BiocGenerics gcrma genefilter]; };
-  simulatorZ = derive2 { name="simulatorZ"; version="1.15.0"; sha256="1x90bakarcp01h72536yr0ks2w3a64l0lwvdvka8whwm72sh8255"; depends=[Biobase BiocGenerics CoxBoost gbm GenomicRanges Hmisc IRanges S4Vectors SummarizedExperiment survival]; };
-  sincell = derive2 { name="sincell"; version="1.13.0"; sha256="0mqm5qrb5nrcpigpvkjvhs0fh386x9lm6p5ns1vl38gvdq9yqvi3"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; };
-  singleCellTK = derive2 { name="singleCellTK"; version="1.1.5"; sha256="180klrpaq8dz484xpd76aif2n5jyqxi4l0lr969v0yby9hn9jvyq"; depends=[AnnotationDbi ape Biobase circlize cluster colourpicker ComplexHeatmap data_table DelayedArray DESeq2 DT ggplot2 ggtree gridExtra GSVA GSVAdata limma MAST matrixStats multtest plotly RColorBrewer reshape2 Rtsne S4Vectors shiny shinyalert shinyjs SingleCellExperiment SummarizedExperiment sva]; };
-  singscore = derive2 { name="singscore"; version="1.1.0"; sha256="1n21cikl874xhbx2c0nd678p53s6gvavih3dz2cbm1l1mprn5gx1"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel ggsci GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape SummarizedExperiment tidyr]; };
+  simulatorZ = derive2 { name="simulatorZ"; version="1.15.1"; sha256="16vzgni41r2jj8g8lbf3hh7r7202j0zq77shdaivrfzas19gaxwc"; depends=[Biobase BiocGenerics CoxBoost gbm GenomicRanges Hmisc SummarizedExperiment survival]; };
+  sincell = derive2 { name="sincell"; version="1.13.2"; sha256="1h43wmx7l2sl9ka9lklqxfd35zkjbxvwsza979vxp6c8j8plp03g"; depends=[cluster entropy fastICA fields ggplot2 igraph MASS proxy Rcpp reshape2 Rtsne scatterplot3d statmod TSP]; };
+  singleCellTK = derive2 { name="singleCellTK"; version="1.1.26"; sha256="1caw8cyw9f0ky3mj1fsk5lfgb4v0g3ghqb0l32j70q1r1yipdl87"; depends=[AnnotationDbi ape Biobase circlize cluster colourpicker ComplexHeatmap data_table DelayedArray DESeq2 DT enrichR ggplot2 ggtree gridExtra GSVA GSVAdata limma MAST matrixStats multtest plotly RColorBrewer reshape2 Rtsne S4Vectors shiny shinyalert shinycssloaders shinyjs SingleCellExperiment SummarizedExperiment sva]; };
+  singscore = derive2 { name="singscore"; version="1.1.1"; sha256="12qqx0xnjza2rlyy1isq8mp28baphmb5yld3av5wvackyn0mwmf7"; depends=[Biobase BiocParallel edgeR ggplot2 ggrepel ggsci GSEABase magrittr matrixStats plotly plyr RColorBrewer reshape SummarizedExperiment tidyr]; };
   sizepower = derive2 { name="sizepower"; version="1.51.0"; sha256="0g0f5z0ccypk7m81b2nhrrj86fv1fin96qm8wba2j6ib2wf0p4np"; depends=[]; };
-  skewr = derive2 { name="skewr"; version="1.13.1"; sha256="0kgs9xf1609y0na5d9lrl6gj3rrpraagbhnhh9iq3p5b0r1ad92m"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; };
-  slalom = derive2 { name="slalom"; version="1.3.0"; sha256="0b68dq85h3rq0q4lbiv7zv4wg1prf79kh96m06hg9dp6336wy60w"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; };
-  slingshot = derive2 { name="slingshot"; version="0.99.8"; sha256="0yafvan6py8m4xnhx89hipzv4kbyviivxgn07mp74falci5f9mxw"; depends=[ape clusterExperiment igraph matrixStats princurve rgl SingleCellExperiment SummarizedExperiment]; };
-  slinky = derive2 { name="slinky"; version="0.99.18"; sha256="09074wzn1534x76fczfcj6jl94vgv33yq3vhzsv1m342kwqn3mi5"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; };
+  skewr = derive2 { name="skewr"; version="1.13.2"; sha256="01ks1ir4sclf2gpwjn0mahxg9iz9iz66axxni190x7gnn076byc4"; depends=[IlluminaHumanMethylation450kmanifest methylumi minfi mixsmsn RColorBrewer S4Vectors wateRmelon]; };
+  slalom = derive2 { name="slalom"; version="1.3.1"; sha256="0qjw9zqyxnm6s6glw5j9iaqalnb5rbnrzkmwha2gswq9g6jd803n"; depends=[BH ggplot2 GSEABase Rcpp RcppArmadillo rsvd SingleCellExperiment SummarizedExperiment]; };
+  slingshot = derive2 { name="slingshot"; version="0.99.13"; sha256="0w7ii3npq0qgjlszmsmn82sks9rdavhzqvxnn3d7p6c5y5bhz51j"; depends=[ape clusterExperiment igraph matrixStats princurve rgl SingleCellExperiment SummarizedExperiment]; };
+  slinky = derive2 { name="slinky"; version="0.99.20"; sha256="1k41hw11wv9lnwkfbfbwdcajfac0sm0c7cspk8iwnkpzkj2qns8c"; depends=[curl dplyr foreach httr jsonlite readr rhdf5 SummarizedExperiment tidyr]; };
   snapCGH = derive2 { name="snapCGH"; version="1.51.0"; sha256="0qfkc3sa8inlnviw5wx36nyy71b59xas9rqsmfb4j32nxdhqj64p"; depends=[aCGH cluster DNAcopy GLAD limma tilingArray]; };
   snm = derive2 { name="snm"; version="1.29.0"; sha256="052mayih2hdgsgklqhvzmvnvx82ch8q4jvpx8ch5rp4k4g0qlqyj"; depends=[corpcor lme4]; };
   snpStats = derive2 { name="snpStats"; version="1.31.0"; sha256="1pxdf5qnibp6szwsllcayqxm9164yl30awfizlv6jmphfkah2i35"; depends=[BiocGenerics Matrix survival zlibbioc]; };
   soGGi = derive2 { name="soGGi"; version="1.13.0"; sha256="1xg6yaprmafl861g66j5pymlg1hpjanyibyi3zkrd15avvxw23g9"; depends=[BiocGenerics BiocParallel Biostrings chipseq GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 IRanges preprocessCore reshape2 Rsamtools rtracklayer S4Vectors SummarizedExperiment]; };
   sparseDOSSA = derive2 { name="sparseDOSSA"; version="1.5.0"; sha256="15vpj6v1x84zfy7vblhkm1vsv8hp5qa0fhfgfxbnzc5v28g1g41h"; depends=[MASS MCMCpack optparse tmvtnorm]; };
+  sparsenetgls = derive2 { name="sparsenetgls"; version="0.99.7"; sha256="05n4c3gic10hy68kkc8mvh7d51sfbzvr8wr04y160pmlgrjslps4"; depends=[glmnet huge MASS Matrix parcor]; };
   specL = derive2 { name="specL"; version="1.15.0"; sha256="1xdfsvq7i9g2pbr0fh0awdwvl3j5ggk1r0n5bxhq7s2p4kjppxc6"; depends=[DBI protViz RSQLite seqinr]; };
   spikeLI = derive2 { name="spikeLI"; version="2.41.0"; sha256="1wx57idxn0wbg9mcfxdydcs5fbxmarsvv4hjcp62r5dpp4ymhcsb"; depends=[]; };
   spkTools = derive2 { name="spkTools"; version="1.37.0"; sha256="12nwaifk726dr0lh6yf8xaxdmhlybiy88fwc1qypm3kvw6jff6ma"; depends=[Biobase gtools RColorBrewer]; };
-  splatter = derive2 { name="splatter"; version="1.5.1"; sha256="0anp2ipvagv2vfhnk0yzldmn9s1z3liqmmqrs23s1yfi9dasdgbs"; depends=[akima BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats scales scater SingleCellExperiment SummarizedExperiment]; };
+  splatter = derive2 { name="splatter"; version="1.5.8"; sha256="1bcjrywp49inr59xc01c7iz925wm2jpghx0anj97w08w0z5pn59s"; depends=[akima BiocGenerics BiocParallel checkmate crayon edgeR fitdistrplus ggplot2 locfit matrixStats scales scater SingleCellExperiment SummarizedExperiment]; };
   spliceSites = derive2 { name="spliceSites"; version="1.29.0"; sha256="1ivw3zsy5jggacvcby2nx9g9h0r1vvj331qpxxnvzajp9j0187yq"; depends=[Biobase BiocGenerics Biostrings doBy IRanges rbamtools refGenome seqLogo]; };
   splicegear = derive2 { name="splicegear"; version="1.53.0"; sha256="15bc3wmz3rz2jipgfj51bj2shr5cy941vnzxnk277yzh5wvz9hvc"; depends=[annotate Biobase XML]; };
   splineTimeR = derive2 { name="splineTimeR"; version="1.9.0"; sha256="114c641vyi585yl11czkq5n8gl01q6h8q34g427sj7aspqpf8lkc"; depends=[Biobase FIs GeneNet GSEABase gtools igraph limma longitudinal]; };
@@ -1477,40 +1570,45 @@ in with self; {
   sscore = derive2 { name="sscore"; version="1.53.0"; sha256="0p6klmcl2zd4i8qmmqj043p310grjmi6b2d610wanas03f0jdv71"; depends=[affy affyio]; };
   sscu = derive2 { name="sscu"; version="2.11.0"; sha256="0hnzxyyp82psjddh97kw3g533aiczkji858jl1xqi1kbr02avwc0"; depends=[BiocGenerics Biostrings seqinr]; };
   ssize = derive2 { name="ssize"; version="1.55.0"; sha256="061gpsj4dlzxii5ar3rdbc0kpvwby9639l3pk8vfslvcbl290w9f"; depends=[gdata xtable]; };
-  ssviz = derive2 { name="ssviz"; version="1.15.0"; sha256="18yz1jy0rl4r7ws21kyl1rjix81jkrqbqhqxgn9qf7zsssynxjf9"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; };
+  ssviz = derive2 { name="ssviz"; version="1.15.1"; sha256="0q7xzn5xy8xx660711klssbi996218yvi9map04qinb9n60h0bbw"; depends=[Biostrings ggplot2 RColorBrewer reshape Rsamtools]; };
   staRank = derive2 { name="staRank"; version="1.23.0"; sha256="1gqvfbs15hdg7fkz6yxjxwn227am7lj372yhiiadgm629bwgcyxi"; depends=[cellHTS2]; };
-  stageR = derive2 { name="stageR"; version="1.3.25"; sha256="0gq5j7an4m0npc7vx4p8csiwhsdhx9p48gfjp3gds2jjrlnrpsc0"; depends=[SummarizedExperiment]; };
-  statTarget = derive2 { name="statTarget"; version="1.11.0"; sha256="06cwz5mwlc580bj2pqli08a6ia4q68d792jx0ssjhk6ggh58czqp"; depends=[gWidgets2 gWidgets2RGtk2 impute pdist pls plyr randomForest ROC rrcov]; };
+  stageR = derive2 { name="stageR"; version="1.3.28"; sha256="1k7by1vds39xyxn3yas181si96v8q8rqxwv34b12ihsb4z7nsxpi"; depends=[SummarizedExperiment]; };
+  statTarget = derive2 { name="statTarget"; version="1.11.7"; sha256="06vvha2dp1wf3lbpxxf2p4w1jvicd7fcicc525km7qkw9wp7bl5j"; depends=[impute pdist pls plyr randomForest ROC rrcov]; };
   stepNorm = derive2 { name="stepNorm"; version="1.53.0"; sha256="1iq4kv3dj8nr9nqd4nnrndss4ypc87a9pl389ha9q671ifqahaii"; depends=[marray MASS]; };
-  subSeq = derive2 { name="subSeq"; version="1.11.0"; sha256="0grwj60ax5i9z3bg04wi73pq9qx5mizldc059ja23f4rkk4nq7vg"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; };
-  supraHex = derive2 { name="supraHex"; version="1.19.0"; sha256="0m4plhy7v0rfxr8ysndyqmd1x9nbf2y3hbka5gvs3zmi45wd4rds"; depends=[ape hexbin MASS]; };
-  survcomp = derive2 { name="survcomp"; version="1.31.0"; sha256="0r95jgddlvgx61jwsjgdqb2npm4mi19jyrqw2349h3bds6w1r840"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; };
-  sva = derive2 { name="sva"; version="3.29.0"; sha256="0xrqhnayir6c3hz7yw35rlscgbv6hp0s798v5qmlgdfk4s2x1sq4"; depends=[BiocParallel genefilter limma matrixStats mgcv]; };
+  strandCheckR = derive2 { name="strandCheckR"; version="0.99.15"; sha256="02g18vb3adnk5vd5khpi61whall2vrpj9ghwf7dh43d37q7x3kz9"; depends=[BiocGenerics dplyr GenomeInfoDb GenomicAlignments GenomicRanges ggplot2 gridExtra IRanges magrittr reshape2 Rsamtools S4Vectors stringr TxDb_Hsapiens_UCSC_hg38_knownGene]; };
+  subSeq = derive2 { name="subSeq"; version="1.11.1"; sha256="1xhfxccbdgzy8k3y41vjr7pi42z7lyffvyrfa6w24dvyqxbg5cb0"; depends=[Biobase data_table digest dplyr ggplot2 magrittr qvalue tidyr]; };
+  supraHex = derive2 { name="supraHex"; version="1.19.1"; sha256="0gkp192jg1xnpy8g320hr89qd1w55dlbc3lir3mmx1yyfcdmiclv"; depends=[ape hexbin MASS]; };
+  survcomp = derive2 { name="survcomp"; version="1.31.2"; sha256="029fzp9gpmcrswyd9347kghg1swqkwvi886q4hqffrddwm7dx4a6"; depends=[bootstrap ipred KernSmooth prodlim rmeta SuppDists survival survivalROC]; };
+  sva = derive2 { name="sva"; version="3.29.1"; sha256="0864qxajs9r26x7051hfnf9ns813j8v1l7wgkwjndk8i4h0bbchg"; depends=[BiocParallel genefilter limma matrixStats mgcv]; };
   swfdr = derive2 { name="swfdr"; version="1.7.0"; sha256="1bnqmz6vcj79j6cp15gla9lmsa3d96m790f5yl9vffbcj48n0rlc"; depends=[dplyr ggplot2 reshape2]; };
-  switchBox = derive2 { name="switchBox"; version="1.17.0"; sha256="01bx0ij8ylk0r1hn73mq2dhf07mw8z44bw3mhrydhr8byp0rqz0c"; depends=[gplots pROC]; };
-  switchde = derive2 { name="switchde"; version="1.7.0"; sha256="0kicwjsm5k7glcqp3q19aq2cqdyh3s6jblzp836xgygwxm1yab2m"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; };
-  synapter = derive2 { name="synapter"; version="2.5.1"; sha256="0nmkyza5a7lzmdpv50s7zn1gd30w4xvjlxaycg8id1n2cjzazq75"; depends=[Biobase Biostrings cleaver knitr lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; };
+  switchBox = derive2 { name="switchBox"; version="1.17.1"; sha256="06k771nrdzmr8w5k9d5a7b83bwvnahwahdmx5q4cg7n6la1yll91"; depends=[gplots pROC]; };
+  switchde = derive2 { name="switchde"; version="1.7.1"; sha256="14n3h4afr3sfv08vxip3i8hnn77npcwvhrfg759da8qaqmyb9dky"; depends=[dplyr ggplot2 SingleCellExperiment SummarizedExperiment]; };
+  synapter = derive2 { name="synapter"; version="2.5.2"; sha256="04gxig9cya85xha19zrgqh8hkl43nhpdgvhxh7kl2pnfgx0q82nf"; depends=[Biobase Biostrings cleaver knitr lattice MSnbase multtest qvalue RColorBrewer readr rmarkdown]; };
   synergyfinder = derive2 { name="synergyfinder"; version="1.7.0"; sha256="0v76jdh7dh9hhjgxfbls529lrv1wkjvaym39s7ahm3p1njycx05d"; depends=[drc ggplot2 gplots gridBase lattice nleqslv reshape2 SpatialExtremes]; };
   synlet = derive2 { name="synlet"; version="1.11.0"; sha256="0ijhssagav4hw7nm8x5157crdv4i8yhikrk6qf9w134lkkl0mviq"; depends=[doBy dplyr ggplot2 magrittr RankProd RColorBrewer reshape2]; };
-  systemPipeR = derive2 { name="systemPipeR"; version="1.15.1"; sha256="1ljvvsbwnn03czl8rckbx4rlnggh29y133k95ldj3p8vjn61f23r"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicFeatures GenomicRanges ggplot2 GO_db GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; };
-  tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.1.1"; sha256="0b9qr0wkbdy31j1jnxi6k883avr60shx8v111ra3pjvrfnczl933"; depends=[assertive BiocGenerics Biostrings GenomeInfoDb GenomicRanges reshape2 rtracklayer S4Vectors stringr]; };
-  tRanslatome = derive2 { name="tRanslatome"; version="1.19.0"; sha256="08wlv7a39m1zrk8pssmck2zmyghn19ksr9fpf03z8ypwsqghaac5"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd samr sigPathway topGO]; };
-  tenXplore = derive2 { name="tenXplore"; version="1.3.0"; sha256="1x0b4gjs1igir8k8zlwc66w63gsf2ffk3vk7yas1cl3ivvvvw400"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; };
+  systemPipeR = derive2 { name="systemPipeR"; version="1.15.4"; sha256="174nh3p7rhfdhpl0rpyg14z3nr9gkv5j57csazdsqn6qd6fgblxy"; depends=[annotate BatchJobs BiocGenerics Biostrings DESeq2 edgeR GenomicFeatures GenomicRanges ggplot2 GO_db GOstats limma pheatmap rjson Rsamtools ShortRead SummarizedExperiment VariantAnnotation]; };
+  tRNA = derive2 { name="tRNA"; version="0.99.11"; sha256="1ahqh4jrlgjdb25v47ilwx84dibgg0birqxz4jxmbkya0sah36i9"; depends=[assertive BiocGenerics Biostrings GenomicRanges ggplot2 IRanges S4Vectors scales stringr XVector]; };
+  tRNAdbImport = derive2 { name="tRNAdbImport"; version="0.99.7"; sha256="0rys26q9vrblpkjq1hhsv924k9k3vf40dnqsbmwc7xbwxi3cb434"; depends=[assertive Biostrings GenomicRanges httr IRanges S4Vectors stringr tRNA xml2]; };
+  tRNAscanImport = derive2 { name="tRNAscanImport"; version="1.1.9"; sha256="0r971lja5fb352yzvhnvbynci78rpni3rli4kx5pyshh7bymiml2"; depends=[assertive BiocGenerics Biostrings GenomeInfoDb GenomicRanges rtracklayer S4Vectors stringr tRNA]; };
+  tRanslatome = derive2 { name="tRanslatome"; version="1.19.5"; sha256="1li5qwwmsq5pgawkb2ffd6yqh8qr88dan624fm938rj0iqdwaxz8"; depends=[anota Biobase DESeq edgeR GOSemSim gplots Heatplus limma org_Hs_eg_db plotrix RankProd sigPathway topGO]; };
+  tenXplore = derive2 { name="tenXplore"; version="1.3.1"; sha256="1jam1x14hr8rcgxq21yrpvfxcap3rcpcyz4pxh0d5z9n8ry7m2mr"; depends=[AnnotationDbi matrixStats ontoProc org_Mm_eg_db restfulSE shiny SummarizedExperiment]; };
   ternarynet = derive2 { name="ternarynet"; version="1.25.1"; sha256="01yzfiyrbkdgzzkdnn2ifa879j8pal38k8zm83d4ad9y06v8ndbm"; depends=[igraph]; };
-  tigre = derive2 { name="tigre"; version="1.35.0"; sha256="0bby62hc2858pppk071fn2qrnqyjwc7fnpvg17y5ff2042mg0g02"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; };
+  tigre = derive2 { name="tigre"; version="1.35.3"; sha256="0ya16fnif6ww3xviadhrnkh7hdgpi7bb2rbj27lxahd7kpigja2v"; depends=[annotate AnnotationDbi Biobase BiocGenerics DBI gplots RSQLite]; };
   tilingArray = derive2 { name="tilingArray"; version="1.59.0"; sha256="1kbw2hj4x3wizqia245kfb1x7rkd6prij7ywif8w3wcv9c8p919m"; depends=[affy Biobase genefilter pixmap RColorBrewer strucchange vsn]; };
   timecourse = derive2 { name="timecourse"; version="1.53.0"; sha256="1424s2ai9mkmxxswy6i928gzkk6kk5yz59nxkz91icg39xlf0rl5"; depends=[Biobase limma marray MASS]; };
-  timescape = derive2 { name="timescape"; version="1.5.0"; sha256="0p0i3ypd4gg44l8s7yvphjwzadnnf5l6grg28wbm7miim54vvc2y"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; };
+  timescape = derive2 { name="timescape"; version="1.5.1"; sha256="0525j832iffyjcb1ii82jy0ix8mdfyf7w9frmc5zrwkflq0x2ds2"; depends=[dplyr gtools htmlwidgets jsonlite stringr]; };
   tkWidgets = derive2 { name="tkWidgets"; version="1.59.0"; sha256="0nxvgfl8kmasb1i6s3sq46qz0f7sjbqlwm5hpww1856bqd8dyyld"; depends=[DynDoc widgetTools]; };
-  tofsims = derive2 { name="tofsims"; version="1.9.0"; sha256="0hadp7726y0vfaz953hwpl27j8bhrdwrm66c81ic4jrpcicixvvr"; depends=[ALS ChemometricsWithR KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; };
-  topGO = derive2 { name="topGO"; version="2.33.0"; sha256="1avq073grahvf92sg4jr6fg3ld5z18l1pnfsgp337m308zvss0mv"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; };
-  trackViewer = derive2 { name="trackViewer"; version="1.17.2"; sha256="0hnhcns4kblnlvdsvvs3z1cmgmjvligyw90ykgskq47navwghjmm"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rgraphviz Rsamtools rtracklayer S4Vectors scales]; };
+  tofsims = derive2 { name="tofsims"; version="1.9.1"; sha256="12agad74lcnmg6v5g0rjzvk0qa7abav5giaz45rha61f7lz2lv12"; depends=[ALS ChemometricsWithR KernSmooth ProtGenerics Rcpp RcppArmadillo signal]; };
+  topGO = derive2 { name="topGO"; version="2.33.1"; sha256="0g6kpxn0x4v55x2p28ikc556hcy3xy1d4wgag01k19ch9bmfaqhs"; depends=[AnnotationDbi Biobase BiocGenerics DBI GO_db graph lattice matrixStats SparseM]; };
+  topdownr = derive2 { name="topdownr"; version="1.3.6"; sha256="0wsicb1m9r3a2gzx0masrfbmdd2ind415rp9iba22blj5ykqx4x0"; depends=[Biobase BiocGenerics Biostrings ggplot2 Matrix MSnbase mzR ProtGenerics S4Vectors]; };
+  trackViewer = derive2 { name="trackViewer"; version="1.17.8"; sha256="196c6inqnvxb0hdlnmi8dyp9sx9jyx6f3ks4gvlv3687yfb0b3fv"; depends=[AnnotationDbi BiocGenerics GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges graph grImport Gviz htmlwidgets InteractionSet IRanges plotrix Rgraphviz Rsamtools rtracklayer S4Vectors scales]; };
   tracktables = derive2 { name="tracktables"; version="1.15.0"; sha256="05glrr3f9clix43nvbsknicm9lyckswc5vj654444zhx08dmgnj5"; depends=[GenomicRanges IRanges RColorBrewer Rsamtools stringr tractor_base XML XVector]; };
-  transcriptR = derive2 { name="transcriptR"; version="1.9.0"; sha256="0i5lclprp0ajm56czknqci6wiml9y30gy4y2gzm9150da2d6m3jc"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; };
-  transcriptogramer = derive2 { name="transcriptogramer"; version="1.3.5"; sha256="0yfkblrbjgm1nf0c7bvb3xks5mmyf4d6g5m0anzhscq2l6a3r01a"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; };
+  transcriptR = derive2 { name="transcriptR"; version="1.9.1"; sha256="09ikxr69d54kskrpx18z8gsmbv3fa120x9qncmkmxczddkmswh6j"; depends=[BiocGenerics caret chipseq e1071 GenomeInfoDb GenomicAlignments GenomicFeatures GenomicRanges ggplot2 IRanges pROC reshape2 Rsamtools rtracklayer S4Vectors]; };
+  transcriptogramer = derive2 { name="transcriptogramer"; version="1.3.6"; sha256="0yzb4yzd5qbcq8gnmni0bprjz2bni2ak08v75ln51k4hcnjdqsxa"; depends=[biomaRt data_table doSNOW foreach ggplot2 igraph limma progress RedeR snow tidyr topGO]; };
+  transite = derive2 { name="transite"; version="0.99.4"; sha256="0iikbbpa9ih6jwz3dmcyqr7698axsr4zim9zfmvw5s516q939h2w"; depends=[BiocGenerics Biostrings dplyr GenomicRanges ggplot2 ggseqlogo gridExtra Rcpp scales TFMPvalue]; };
   traseR = derive2 { name="traseR"; version="1.11.0"; sha256="18s4sy6v9wzcyd0i33zh1kf4nbxmsmzpvqsz6nz7d26xprmir450"; depends=[BSgenome_Hsapiens_UCSC_hg19 GenomicRanges IRanges]; };
-  treeio = derive2 { name="treeio"; version="1.5.1"; sha256="1qn2zxv3adkwddar9d76xghamjl9y7589l2b2b17kd1pldx0q9m3"; depends=[ape dplyr jsonlite magrittr rlang rvcheck tibble tidytree]; };
-  trena = derive2 { name="trena"; version="1.3.0"; sha256="1jchm38bwa4bf4a6mjwy4h96qjm65m05qq5yvwdd9257pm1lfs6p"; depends=[AnnotationDbi BiocParallel biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI flare GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 vbsr]; };
+  treeio = derive2 { name="treeio"; version="1.5.5"; sha256="1nvk2hr75zram3kiw5j65hlzf4gng2j0kbpscn3iwnhv8ja1a08h"; depends=[ape dplyr jsonlite magrittr rlang rvcheck tibble tidytree]; };
+  trena = derive2 { name="trena"; version="1.3.1"; sha256="0yzspka8j9iyr4lb8vqsyzap3ps74bjnan3crq2b8qjfpmr0qrcy"; depends=[AnnotationDbi BiocParallel biomaRt Biostrings BSgenome BSgenome_Hsapiens_UCSC_hg19 BSgenome_Hsapiens_UCSC_hg38 BSgenome_Mmusculus_UCSC_mm10 DBI flare GenomicRanges glmnet lassopv MotifDb org_Hs_eg_db randomForest RPostgreSQL RSQLite SNPlocs_Hsapiens_dbSNP150_GRCh38 vbsr]; };
   triform = derive2 { name="triform"; version="1.23.0"; sha256="0rmxaa6hfslpqg5zngcy8s659v9n5mry6kjm1svniz347z7smdrj"; depends=[BiocGenerics IRanges yaml]; };
   trigger = derive2 { name="trigger"; version="1.27.0"; sha256="0yi3r23yw1vsz5y5wxzql0gmvwks0i6kn7f4r53swzmb12fkgs7h"; depends=[corpcor qtl qvalue sva]; };
   trio = derive2 { name="trio"; version="3.19.0"; sha256="1zix49bxx0qiz535cl8pmzjdbh4n4g5qa6bzd87p6ylrzzyxcq0j"; depends=[]; };
@@ -1518,31 +1616,32 @@ in with self; {
   tspair = derive2 { name="tspair"; version="1.39.0"; sha256="0anbb202pazdryadm7ww68nlrmyzand8kiwjfxnf59n6ansls8nd"; depends=[Biobase]; };
   tweeDEseq = derive2 { name="tweeDEseq"; version="1.27.0"; sha256="0aycx0ixg6bj05wz9am84jxbwa9qbbh3hmjp0w4pppzbmv6xrydw"; depends=[cqn edgeR limma MASS]; };
   twilight = derive2 { name="twilight"; version="1.57.0"; sha256="0mhx126yqlq76smabagwjxdff6n3vn9vzsr38nn0v8cs4vzq7v20"; depends=[Biobase]; };
-  twoddpcr = derive2 { name="twoddpcr"; version="1.5.1"; sha256="0kw54x0wsf6mdbdzhvlyh8p8s6vw7yr8a2iyac7j50sqz3zwip5y"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; };
-  tximport = derive2 { name="tximport"; version="1.9.7"; sha256="0xyb1zigqcpdfcwb3gyn7zwqmdxca4cpwl83qhxrfhb30jccxs6g"; depends=[]; };
+  twoddpcr = derive2 { name="twoddpcr"; version="1.5.2"; sha256="0vs1hhlpsn08g5vf5yza0lb055x3lj0xwhgnd4lnq1qc8d1ksz1r"; depends=[class ggplot2 hexbin RColorBrewer S4Vectors scales shiny]; };
+  tximeta = derive2 { name="tximeta"; version="0.99.18"; sha256="1x5vv6w34w3fqrp04i3zbq11zb8mblkvdqgmd790ll0f5y1qhq58"; depends=[AnnotationDbi BiocFileCache ensembldb GenomeInfoDb GenomicFeatures jsonlite rappdirs S4Vectors SummarizedExperiment tibble tximport]; };
+  tximport = derive2 { name="tximport"; version="1.9.12"; sha256="1s5h5kxzb8nq9qc68rq5ik894yx7jl0315cn1b4k97i12rpajyjf"; depends=[]; };
   uSORT = derive2 { name="uSORT"; version="1.7.0"; sha256="1f5dabc7ksz6fhx7x87dm8whlxrhzh5zzfysgs18fv6yn815x747"; depends=[Biobase BiocGenerics cluster fpc gplots igraph Matrix monocle plyr RANN RSpectra VGAM]; };
   unifiedWMWqPCR = derive2 { name="unifiedWMWqPCR"; version="1.17.0"; sha256="0rf9hrilb6d9jr2lbw20d3almds9lmhbdkmm130kx26kybp6vi1i"; depends=[BiocGenerics HTqPCR]; };
-  variancePartition = derive2 { name="variancePartition"; version="1.11.6"; sha256="1759wz6xfvsbc0kf09dqq3n59nqqw0z81khh5gvzbgvq5q17ak3h"; depends=[Biobase colorRamps doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS pbkrtest reshape2]; };
+  variancePartition = derive2 { name="variancePartition"; version="1.11.14"; sha256="091j76x1jcc6g8vnzsjfnpf8q6d35rmvmv7sxcjx1jdyshl7gfjd"; depends=[Biobase colorRamps doParallel foreach ggplot2 gplots iterators limma lme4 lmerTest MASS pbkrtest reshape2 scales]; };
   vbmp = derive2 { name="vbmp"; version="1.49.0"; sha256="0h2lwkqx765s6iyyr3mivj83zdg761bci0jz1g8q9wl8xk72ajif"; depends=[]; };
-  vidger = derive2 { name="vidger"; version="1.1.3"; sha256="1hvxp7lzy95i37vyhk0xa0dpn64f9kflx6k95cndl0bbivq6lrbb"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; };
-  viper = derive2 { name="viper"; version="1.15.0"; sha256="0cl6qn0jw5xgrg2wz9rkx8j5w3hx9vbjw1yh1ayvsdghb4vb8k5b"; depends=[Biobase e1071 KernSmooth mixtools]; };
+  vidger = derive2 { name="vidger"; version="1.1.4"; sha256="1a48x1jjyccxbz792j7g538w82ascmm4aja10q0r60994h6hx6f2"; depends=[Biobase DESeq2 edgeR GGally ggplot2 ggrepel knitr RColorBrewer rmarkdown scales SummarizedExperiment tidyr]; };
+  viper = derive2 { name="viper"; version="1.15.1"; sha256="1mi1qcznr8xcz5n5wr8mcbq5wxvb00rz4zahyv90aa5py62sxagw"; depends=[Biobase e1071 KernSmooth mixtools]; };
   vsn = derive2 { name="vsn"; version="3.49.1"; sha256="1lklwnxvwv1x68nyywxkdgla5pz8d94a86whf5x9vcbvcmk92x2i"; depends=[affy Biobase ggplot2 lattice limma]; };
   vtpnet = derive2 { name="vtpnet"; version="0.21.0"; sha256="0f89b3s1412sxwp64dlnc8rlawy2w86d1y5g1c7n2hd290m51dvp"; depends=[doParallel foreach GenomicRanges graph gwascat]; };
-  vulcan = derive2 { name="vulcan"; version="1.3.0"; sha256="182aq3ly17chrlisdjsf3zzwxfv004cwbbpl2rfk40ws1376xf1i"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; };
-  wateRmelon = derive2 { name="wateRmelon"; version="1.25.0"; sha256="0arrpkdrxy1rz3ryiswq767rz5rqmvs2rxj85lagk6rj17ia64c2"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; };
+  vulcan = derive2 { name="vulcan"; version="1.3.1"; sha256="0lviq4mgnpfqb0rrh64r73xlqb50q2k4qagbn8gn9ifj35wvv2lr"; depends=[Biobase caTools ChIPpeakAnno csaw DESeq DiffBind GenomicRanges gplots locfit S4Vectors TxDb_Hsapiens_UCSC_hg19_knownGene viper wordcloud zoo]; };
+  wateRmelon = derive2 { name="wateRmelon"; version="1.25.2"; sha256="0cqy6kp2d4bms235sdzr9vy8j0956wyqr80q2kk4jqywxcb6l1yn"; depends=[Biobase IlluminaHumanMethylation450kanno_ilmn12_hg19 illuminaio limma lumi matrixStats methylumi ROC]; };
   wavClusteR = derive2 { name="wavClusteR"; version="2.15.0"; sha256="0pngqm1b5z8zm5sdnqprq5mibrfm5rwzi0sa0mgwg9gsrn8wcg09"; depends=[BiocGenerics Biostrings foreach GenomicFeatures GenomicRanges ggplot2 Hmisc IRanges mclust Rsamtools rtracklayer S4Vectors seqinr stringr wmtsa]; };
   waveTiling = derive2 { name="waveTiling"; version="1.23.0"; sha256="018vhrv092qfyd5vmdbq216h3rsr6xk9nnknb4x0vnk1l7yckrk8"; depends=[affy Biobase Biostrings GenomeGraphs GenomicRanges IRanges oligo oligoClasses preprocessCore waveslim]; };
   weaver = derive2 { name="weaver"; version="1.47.0"; sha256="096sgg9xrnlf819bh6gz6a9phbhn7a54phd4nl8gz7xfjxscfrhi"; depends=[codetools digest]; };
-  webbioc = derive2 { name="webbioc"; version="1.53.0"; sha256="0vm80p0sbp9lj9d29g3agmkrav4whbndgj4rhw9gz9cd7i1lv0jj"; depends=[affy annaffy Biobase BiocInstaller gcrma multtest qvalue vsn]; };
+  webbioc = derive2 { name="webbioc"; version="1.53.1"; sha256="0wjkfa6s1a0vhbfpplsvy0qzkrs94x2zd3s1kpcg5p6j4v9x9ph4"; depends=[affy annaffy Biobase BiocManager gcrma multtest qvalue vsn]; };
   widgetTools = derive2 { name="widgetTools"; version="1.59.0"; sha256="1ypz4rpi6yw6dg1w1dgnjx389xldmjzh484bs9dqzz27ly8b860v"; depends=[]; };
-  wiggleplotr = derive2 { name="wiggleplotr"; version="1.5.0"; sha256="1n338nhd8rpdv218qwnlrj8vqvnq131x51nfylzv9a8fn4d3lv7g"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; };
-  xcms = derive2 { name="xcms"; version="3.3.2"; sha256="1pnbp8a9gx1ys69yr7vv7mdzl5mcj9azxy0agq16xhxix7mwp13w"; depends=[Biobase BiocGenerics BiocParallel lattice MassSpecWavelet MSnbase multtest mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors]; };
+  wiggleplotr = derive2 { name="wiggleplotr"; version="1.5.1"; sha256="01d237s89qkj5i2d377g20h2ibqz1f4m087xchq1lnfmkb3mq0fm"; depends=[assertthat cowplot dplyr GenomeInfoDb GenomicRanges ggplot2 IRanges purrr rtracklayer S4Vectors]; };
+  xcms = derive2 { name="xcms"; version="3.3.6"; sha256="17mj4jlw0r48l311nhh44qpmgjcw4bq535xj7ljvg5mkxx74zlxj"; depends=[Biobase BiocGenerics BiocParallel lattice MassSpecWavelet MSnbase multtest mzR plyr ProtGenerics RANN RColorBrewer robustbase S4Vectors]; };
   xmapbridge = derive2 { name="xmapbridge"; version="1.39.0"; sha256="075yj9vqy4gf5ijirpfnm08rxqzg3bflirlr5j6qmr146jsj5cky"; depends=[]; };
   xps = derive2 { name="xps"; version="1.41.2"; sha256="01da8wc01fry7z8ma880h5g6vvqi3rdwqg5wmx9x56yfg0c293im"; depends=[]; };
   yamss = derive2 { name="yamss"; version="1.7.0"; sha256="1h8wz9cm042n9scgpm0m3c7v3wik8nr7lrm4nb47bikzcij7ymd3"; depends=[BiocGenerics data_table EBImage IRanges limma Matrix mzR S4Vectors SummarizedExperiment]; };
   yaqcaffy = derive2 { name="yaqcaffy"; version="1.41.0"; sha256="044gyqh9pk2ml6f99mfjfw7zp2ygnis74jh4x8z7i99q6jip8pbn"; depends=[simpleaffy]; };
-  yarn = derive2 { name="yarn"; version="1.7.0"; sha256="19x4r9mmii1r4ypj2p6f4vk396f0xqzbbpys3wqkwklf9gsqia32"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; };
+  yarn = derive2 { name="yarn"; version="1.7.1"; sha256="02km8cd5l2l7whzb585c741qkzv6zlmxrl0fjfp13nsww69vg914"; depends=[Biobase biomaRt downloader edgeR gplots limma matrixStats preprocessCore quantro RColorBrewer readr]; };
   zFPKM = derive2 { name="zFPKM"; version="1.3.0"; sha256="12yj97g1y37aq4qfyqchgvp93kkb0bzxmk196s1vygh4dk0b36lp"; depends=[checkmate dplyr ggplot2 SummarizedExperiment tidyr]; };
-  zinbwave = derive2 { name="zinbwave"; version="1.3.2"; sha256="1arl59nlzksmc95hqp5pj86yj8xq122mdw3ng4pxwdbm5fs63dw7"; depends=[BiocParallel copula edgeR genefilter glmnet Matrix SingleCellExperiment softImpute SummarizedExperiment]; };
+  zinbwave = derive2 { name="zinbwave"; version="1.3.4"; sha256="0px2v20plqnshb41wy7fk9vh00l45m8mm7paqd4m197wjpxbyf3s"; depends=[BiocParallel copula edgeR genefilter glmnet Matrix SingleCellExperiment softImpute SummarizedExperiment]; };
   zlibbioc = derive2 { name="zlibbioc"; version="1.27.0"; sha256="17jr4jgl30qlnmjfzzc1qd1rah5c9bwbp08dsnkhy7fxpwimqm2i"; depends=[]; };
 }
diff --git a/pkgs/development/r-modules/cran-packages.nix b/pkgs/development/r-modules/cran-packages.nix
index db78421cf5ef..e942aa838770 100644
--- a/pkgs/development/r-modules/cran-packages.nix
+++ b/pkgs/development/r-modules/cran-packages.nix
@@ -4,7 +4,7 @@
 # Rscript generate-r-packages.R cran >new && mv new cran-packages.nix
 
 { self, derive }:
-let derive2 = derive { snapshot = "2018-07-06"; };
+let derive2 = derive { snapshot = "2018-10-29"; };
 in with self; {
   A3 = derive2 { name="A3"; version="1.0.0"; sha256="017hq9pjsv1h9i7cqk5cfx27as54shlhdsdvr6jkhb8jfkpdb6cw"; depends=[pbapply xtable]; };
   ABC_RAP = derive2 { name="ABC.RAP"; version="0.9.0"; sha256="1kdspln17v0krvahcd55vib4dv5azp60b3r1zf489x10qqbp1mxk"; depends=[]; };
@@ -12,7 +12,7 @@ in with self; {
   ABCoptim = derive2 { name="ABCoptim"; version="0.15.0"; sha256="1ih0xk88qhsmpvnxf56041wx5sk8as2f4f2gdnpnwdym9mbr9n4b"; depends=[Rcpp]; };
   ABCp2 = derive2 { name="ABCp2"; version="1.2"; sha256="1s2skkxpzss7c29i8600psgrp0hl46jcrxqrmy2b4db8hc0kcnbx"; depends=[MASS]; };
   ABHgenotypeR = derive2 { name="ABHgenotypeR"; version="1.0.1"; sha256="08cpmnaaxsm5c5bjifnfxdlvg5inrf13biqpcl2yq5zpqjmiki0l"; depends=[ggplot2 reshape2]; };
-  ABPS = derive2 { name="ABPS"; version="0.2"; sha256="1k3f5i34f4w2khkszb4qhwwcpiy7gsfh82vjr6rypwg6rx5rjclq"; depends=[kernlab]; };
+  ABPS = derive2 { name="ABPS"; version="0.3"; sha256="0n3f66nmfi5v94il1mxy026mi84w01ph2aljk60vn3mrz8kwf2ll"; depends=[kernlab]; };
   ACA = derive2 { name="ACA"; version="1.1"; sha256="1i3hm27nvnkvc39xlh0d1blq8q0q02czmvgi3cazmjx3jvxay0vq"; depends=[]; };
   ACCLMA = derive2 { name="ACCLMA"; version="1.0"; sha256="1na27sp18fq12gp6vxgqw1ffsz2yi1d8xvrxbrzx5g1kqxrayy0v"; depends=[]; };
   ACD = derive2 { name="ACD"; version="1.5.3"; sha256="1a67bi3hklq8nlc50r0qnyr4k7m9kpvijy8sqqpm54by5hsysfd6"; depends=[]; };
@@ -26,9 +26,9 @@ in with self; {
   ADCT = derive2 { name="ADCT"; version="0.1.0"; sha256="1glf83ydx4v3ld8c4gb9h3jk6srd054bis5l8k57p1ba4fnqnnpp"; depends=[mvtnorm]; };
   ADDT = derive2 { name="ADDT"; version="2.0"; sha256="044bb1jw2m8vwk5q8l7rlz4kqphjvy8i9d59rjg0k5q5l9vczfrp"; depends=[coneproj Matrix nlme]; };
   ADGofTest = derive2 { name="ADGofTest"; version="0.3"; sha256="0ik817qzqp6kfbckjp1z7srlma0w6z2zcwykh0jdiv7nahwk3ncw"; depends=[]; };
-  ADMM = derive2 { name="ADMM"; version="0.3.0"; sha256="0j3sh497pf495qf1ivvp8h4hplq6km6m923kiv5j02sianl1j9zh"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo Rdpack]; };
+  ADMM = derive2 { name="ADMM"; version="0.3.1"; sha256="121hqglivik65gv657bdv7a8kzgvrwgwckz2h746fcibv2s7dfsi"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo Rdpack]; };
   ADMMnet = derive2 { name="ADMMnet"; version="0.1"; sha256="15f1zhgv7xai954qz2ahj4kpxyvr2svxpmybz7j43bhjpkq72dmq"; depends=[Matrix Rcpp RcppEigen]; };
-  ADMMsigma = derive2 { name="ADMMsigma"; version="2.0"; sha256="1lyixqbfmrk850y4v89chwws0arjc6j420r55p733p0zvj0mryha"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo RcppProgress]; };
+  ADMMsigma = derive2 { name="ADMMsigma"; version="2.1"; sha256="1943dza086s22pr0yz41wzn9cdg11x7fl9zr3w012865yj219m7l"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo RcppProgress]; };
   ADPF = derive2 { name="ADPF"; version="0.0.1"; sha256="1n7302xx77ngvp9i2h582i1mqslzllcdr0bn3pl2zk9jd8k97p7n"; depends=[]; };
   ADPclust = derive2 { name="ADPclust"; version="0.7"; sha256="0s47cpsjykn7imsssa9w9b6g9d1sz2yah78yqzxmh0i3lqd757c1"; depends=[cluster dplyr fields knitr]; };
   AEDForecasting = derive2 { name="AEDForecasting"; version="0.20.0"; sha256="16q2sn5zzvysyy3r32jnr21pbdkkn0k0sbarni6fdkx7pj27yijn"; depends=[changepoint forecast signal]; };
@@ -61,7 +61,7 @@ in with self; {
   AMModels = derive2 { name="AMModels"; version="0.1.3"; sha256="1lhd15sh550z664qqxw6jpknnh628hm585d70ipx8s4mswi6g4hj"; depends=[unmarked]; };
   AMOEBA = derive2 { name="AMOEBA"; version="1.1"; sha256="1npzh3rpfnxd4r1pj1hm214sfgbw4wmq4ws093lnl7pvsl0q37xn"; depends=[rlecuyer snowfall spdep]; };
   AMORE = derive2 { name="AMORE"; version="0.2-15"; sha256="00zfqcsah2353mrhqkv8bbh24l8gaxk4y78icr9kxy4pqb2988yz"; depends=[]; };
-  AMR = derive2 { name="AMR"; version="0.2.0"; sha256="0n3qzkqxq06vxx0nk4983k7khcy14hc4cxd3cii8lscf3y6bmvjc"; depends=[backports data_table dplyr knitr reshape2 rvest tibble xml2]; };
+  AMR = derive2 { name="AMR"; version="0.4.0"; sha256="056r5z553r6amq7kdbc4rl4mqlcrzsm7aprlf733as8rrabjfh9c"; depends=[backports curl data_table dplyr hms knitr rlang rvest xml2]; };
   ANN2 = derive2 { name="ANN2"; version="1.5"; sha256="17b0dv1dl4kni7yvrrwk65cadk6f7qk7505r27j9v530pffyv1k3"; depends=[Rcpp RcppArmadillo robustbase]; };
   ANOM = derive2 { name="ANOM"; version="0.5"; sha256="14nfy9xplbabfprwxz5fvx26nmqhp657vr6d90dc8vk8ds63ckiz"; depends=[ggplot2 MCPAN multcomp nparcomp SimComp]; };
   ANOVA_TFNs = derive2 { name="ANOVA.TFNs"; version="1.0"; sha256="0dwspvxj2gzyvxsd9xyhv47n1hjlqa7z9qza4h3hn1xda12vkjly"; depends=[FuzzyNumbers]; };
@@ -72,24 +72,26 @@ in with self; {
   APSIM = derive2 { name="APSIM"; version="0.9.2"; sha256="0yyjz1kyvqpw9dh71ls2lf44gbb6r7bp9a22mr3z68k89azps5rc"; depends=[data_table lubridate plyr RSQLite sirad stringr]; };
   APSIMBatch = derive2 { name="APSIMBatch"; version="0.1.0.2374"; sha256="0j44ijq1v1k60lka9nmw8m1jfjw7pidny9bvswqy5v82gzmwl29d"; depends=[]; };
   APfun = derive2 { name="APfun"; version="0.1.3"; sha256="02p40n4l66r63wq8x7ygchfhxmnpaa7vgy4bjhkqx5gfi2v4psxd"; depends=[maptools raster rgdal sp yesno]; };
-  APtools = derive2 { name="APtools"; version="3.0"; sha256="0v5xgznc8hvw3gid8x5chksc62zpwbx34qsh64sv7d1kqmh5w26j"; depends=[survival]; };
+  APtools = derive2 { name="APtools"; version="6.8.8"; sha256="171aydyd7s8qll7djl4ysy596wxdf5wfwpqwfi14jjglc9r9qrrr"; depends=[cmprsk survival]; };
   AR = derive2 { name="AR"; version="1.1"; sha256="1wn4g2997c4vc3mzq2pv8ld0ryp0i78v4zlqqryvhshxgnz4f2pr"; depends=[DISTRIB]; };
   AR1seg = derive2 { name="AR1seg"; version="1.0"; sha256="0v9adx5wj9r4jwl3bqqmj0byiqfp585jz013qfqrq601wj8v4zi3"; depends=[Segmentor3IsBack]; };
   ARCensReg = derive2 { name="ARCensReg"; version="2.1"; sha256="05zjk1wxqfigzg80lvx1940a059jfdr9zbzgzmz2n01glj1lvj63"; depends=[msm mvtnorm numDeriv tmvtnorm]; };
   ARHT = derive2 { name="ARHT"; version="0.1.0"; sha256="1fz81a202r8vk655dg6a03zfq3gfkimqjvmc95k3j02xz0iv58kn"; depends=[]; };
+  ARIbrain = derive2 { name="ARIbrain"; version="0.2"; sha256="18c7yxkrnqh18gcfzvdc5wqig6ywdmjcy8rlz0fdj3b8fb84dfpr"; depends=[hommel plyr RNifti]; };
   AROC = derive2 { name="AROC"; version="1.0"; sha256="1mmcd8nqwzaqghzbcrv0g767j57svzvlzgk71ir61vvjhsk91dkg"; depends=[Hmisc MASS Matrix moments np]; };
   ARPobservation = derive2 { name="ARPobservation"; version="1.1"; sha256="1cdhn11jf1nf03jyvs17ygmjq9pb5rvmyyrq9fp7ifmvcgbkwsms"; depends=[]; };
   ART = derive2 { name="ART"; version="1.0"; sha256="186w1ivj5v3h906crl953qxgai5wiznaih83dgvwgnmabs9p1wvk"; depends=[car]; };
   ARTIVA = derive2 { name="ARTIVA"; version="1.2.3"; sha256="1jdvsslc8parz7wibcv51fx62brl2mc6i482hz43j1npsms2z1hl"; depends=[gplots igraph MASS]; };
   ARTP = derive2 { name="ARTP"; version="2.0.5"; sha256="0lwvhf5lamw28sd41vrhyin8ab92rl93j1ahk0aacwvnikgmfkpj"; depends=[]; };
-  ARTP2 = derive2 { name="ARTP2"; version="0.9.32"; sha256="12mrxssjcj08svdsrxv2nm53mzsgy1k0whd5zzy6fz327bjyqsrz"; depends=[data_table Formula]; };
-  ARTool = derive2 { name="ARTool"; version="0.10.4"; sha256="1malrjv4myk9nj3dndgpzscfhky4y6lj8xbfg8h2b29g7s2k846q"; depends=[car dplyr lme4 magrittr plyr]; };
+  ARTP2 = derive2 { name="ARTP2"; version="0.9.44"; sha256="0qwjfpinvlsxswq7m2biyd78cvm14xbb09g873vhmkjds3qxdk4c"; depends=[data_table Formula]; };
+  ARTool = derive2 { name="ARTool"; version="0.10.5"; sha256="1l219j5zp0sck0l326fi8nfsw29d83h18ahm4gs4bknfbbv895ic"; depends=[car dplyr lme4 magrittr plyr]; };
   ASGS_foyer = derive2 { name="ASGS.foyer"; version="0.2.1"; sha256="0f0bl1fxda012d8pgqpaqb80m0nn490xih3ddscfqgb87zgrp4sx"; depends=[sp]; };
   ASIP = derive2 { name="ASIP"; version="0.4.9"; sha256="06f1nvy920vyx3bmdi77mwvfsn32xsfxaslhagnf1zh652vfkbwi"; depends=[raster rgdal stringr]; };
-  ASMap = derive2 { name="ASMap"; version="1.0-2"; sha256="0fhivq5i2py79jkwfms0my77p9x8lrkn5vn1lwbsawfkyar4dvkq"; depends=[fields gtools lattice qtl RColorBrewer]; };
+  ASMap = derive2 { name="ASMap"; version="1.0-4"; sha256="0xnrl8jhbvbc789w5gc9dz7j7gzc7wsc94a3d2wdplrmxn186nrb"; depends=[fields gtools lattice qtl RColorBrewer]; };
   ASPBay = derive2 { name="ASPBay"; version="1.2"; sha256="0b1qpyvmj7z10ixrmdxp42bj9s72c1l9rihzmv9p58f12a5aznjz"; depends=[hexbin Rcpp RcppArmadillo]; };
   ASSA = derive2 { name="ASSA"; version="1.0"; sha256="0xdmkl3qy1i6rb5wpiw6rqhz5c88zg9nav7qll235jvxwh3388xk"; depends=[]; };
   ASSISTant = derive2 { name="ASSISTant"; version="1.2-3"; sha256="072lmvmdi5yfyfda42vs556ciwj2rnka02isnknk6czir3947nck"; depends=[mvtnorm R6]; };
+  AST = derive2 { name="AST"; version="0.1.0"; sha256="0z5dw5qw0i61v4796ms7pp66f9y4ylxrcls31ixzcmkklh3rcnp3"; depends=[]; };
   ATE = derive2 { name="ATE"; version="0.2.0"; sha256="1i46ivb7q61kq11z9v1rlnwad914nsdjcz9bagqx17vjk160mc0a"; depends=[]; };
   ATR = derive2 { name="ATR"; version="0.1-0"; sha256="0ljrpix3ksi0v38sfb25s2dlfj1yjbvwcz147dk2v2c24cn3r816"; depends=[partykit]; };
   ATmet = derive2 { name="ATmet"; version="1.2"; sha256="047ibxxf5si45zw22zy8a1kpj36q0pd3bsmxwvn0dhf4h65ah0zz"; depends=[DiceDesign lhs metRology msm sensitivity]; };
@@ -100,13 +102,14 @@ in with self; {
   AWR_Athena = derive2 { name="AWR.Athena"; version="1.1.0-1"; sha256="0p701jj1683npsxa3l5g0cd35yvp9823kadpw9fjvn9ixdfy1nk1"; depends=[rJava RJDBC]; };
   AWR_KMS = derive2 { name="AWR.KMS"; version="0.1"; sha256="00aqhyqlncsv0vfcyhaazxaclwm63v5kscssash7529avdwd4gqg"; depends=[AWR jsonlite rJava]; };
   AWR_Kinesis = derive2 { name="AWR.Kinesis"; version="1.7.3"; sha256="1gfjzbb8xxfd2x5zabysqi0x10sb1c9826wqw8y555nsxgksqxz8"; depends=[AWR futile_logger jsonlite rJava]; };
-  AbSim = derive2 { name="AbSim"; version="0.2.4"; sha256="0n90zbm5nsb9ric92p0mp3a4nzivdh8m8dls18051v2dbn5h4z1v"; depends=[ape poweRlaw]; };
+  AbSim = derive2 { name="AbSim"; version="0.2.6"; sha256="16ddjk8b6xw80ch4jis1y751i9561wdxh0gifbf15qiz3vjckq8m"; depends=[ape poweRlaw]; };
   AbsFilterGSEA = derive2 { name="AbsFilterGSEA"; version="1.5.1"; sha256="15srxkxsvn38kd5frdrwfdf0ad8gskrd0h01wmdf9hglq8fjrp7w"; depends=[Biobase DESeq limma Rcpp RcppArmadillo]; };
   Ac3net = derive2 { name="Ac3net"; version="1.2.2"; sha256="1ns4n0xxz6p34c11bj0k7nzgmyqr9mis2b0g5nfz37dbikndyqyz"; depends=[data_table]; };
   AcceptanceSampling = derive2 { name="AcceptanceSampling"; version="1.0-5"; sha256="18krmmyn8pn11aqd81kbvka68lnd36mnpdh7p3pz9r4m4vjj007x"; depends=[]; };
-  AcousticNDLCodeR = derive2 { name="AcousticNDLCodeR"; version="1.0.1"; sha256="16rmwz51fy84w83vwnq2nv9mcrp4gi9ciirj5555gl1224b9i2am"; depends=[seewave tuneR zoo]; };
+  AcousticNDLCodeR = derive2 { name="AcousticNDLCodeR"; version="1.0.2"; sha256="1fgzgwanpv2pzy74xdk3hamc44p8qch467wh163dxby8jr9ik0sb"; depends=[seewave tuneR zoo]; };
   AcrossTic = derive2 { name="AcrossTic"; version="1.0-3"; sha256="03180h79jhjd66ibrnsfp3yyp2jlfysp7cymw46phzj2palghsc0"; depends=[lpSolve treeClust]; };
   Actigraphy = derive2 { name="Actigraphy"; version="1.3.2"; sha256="0y0ccmxhdfhdmi4k6pbfvnqknkqbgvfsf2qf7z7rc4xpfgym6574"; depends=[fda SDMTools]; };
+  ActisoftR = derive2 { name="ActisoftR"; version="0.0.2"; sha256="07nq31r71kg94zlyzshcnsfl99cc3x03fw5q8qgsfkpc92ridikr"; depends=[data_table dplyr ggplot2 lubridate magrittr RColorBrewer scales tibble tidyr]; };
   ActiveDriver = derive2 { name="ActiveDriver"; version="1.0.0"; sha256="10c7ga48fwvpd5mc4dqiyw4kc2l0iz5qn4hg7xk15r1qmm5rsipa"; depends=[MASS]; };
   AcuityView = derive2 { name="AcuityView"; version="0.1"; sha256="0f0iclmnwdc8ixiiai4svk4x1g3pjy7dhm3cm58fv6ckx12d3d2l"; depends=[fftwtools imager plotrix]; };
   AdMit = derive2 { name="AdMit"; version="2.1.3"; sha256="150zjxl56axhpgm25hzyhwwc5g77pkgi291d2v56zbjjqycfz2v8"; depends=[mvtnorm]; };
@@ -115,19 +118,22 @@ in with self; {
   AdapSamp = derive2 { name="AdapSamp"; version="1.1.1"; sha256="1jayjrsiib2ij4rxxj59g71r3xhzl5yqh0lhi8k6cfy03i7dkvis"; depends=[pracma]; };
   AdaptFit = derive2 { name="AdaptFit"; version="0.2-2"; sha256="124lj1sq5cbp35z4ybkc7ci3fi6pgf8pc5k9mpqmyb6dj870q836"; depends=[cluster MASS nlme SemiPar]; };
   AdaptFitOS = derive2 { name="AdaptFitOS"; version="0.67"; sha256="0s8vv960pkbccpwlfsg1jsfjnfmq9iy8cj1fak5fn2s60zb7nm0a"; depends=[MASS mgcv nlme SemiPar]; };
-  AdaptGauss = derive2 { name="AdaptGauss"; version="1.3.3"; sha256="0f6wk9ds8ayzi0fj1dz1m3755d1sjv4v5vc1hjhfxaim127kmbqh"; depends=[caTools ggplot2 shiny]; };
+  AdaptGauss = derive2 { name="AdaptGauss"; version="1.3.5"; sha256="064mpylzpz7ngqlk637b9ykia4zn7jpcdnxdfp5j84a0fvbm8gx8"; depends=[ggplot2 pracma shiny]; };
+  AdaptiveSparsity = derive2 { name="AdaptiveSparsity"; version="1.6"; sha256="0imr5m8mll9j6n4icsv6z9rl5kbnwsp9wvzrg7n90nnmcxq2cz91"; depends=[MASS Matrix Rcpp RcppArmadillo]; };
   AdequacyModel = derive2 { name="AdequacyModel"; version="2.0.0"; sha256="0amp6ic1wylk24sp9wpx3ci38njj7b9qjqfp89j39hkl6kc1q7sq"; depends=[]; };
   AdhereR = derive2 { name="AdhereR"; version="0.2.0"; sha256="1w42wg52ca0vdrj61dmyikvjvsndwhpyvnkzyissf3zvb69v32im"; depends=[data_table lubridate manipulate shiny]; };
   AdjBQR = derive2 { name="AdjBQR"; version="1.0"; sha256="14437pyz9v09ighwqvy1lcw0vfp2gaqzs9nzrb1gkfbb8ndzjw7k"; depends=[coda MHadaptive quantreg survival]; };
   AdvBinomApps = derive2 { name="AdvBinomApps"; version="1.0"; sha256="1cnmn6c2dyl8qfl7g5sqwbjb52psqxzrj1mbm06zak2y1j7j8f49"; depends=[GenBinomApps rootSolve]; };
-  AdvDif4 = derive2 { name="AdvDif4"; version="0.2.18"; sha256="0vc8hbqjad9rsssd3ff84bgqxz4q6ad1fbz5gcaq1s08979r3kkk"; depends=[]; };
+  AdvDif4 = derive2 { name="AdvDif4"; version="0.3.18"; sha256="0a7yjz9qsyacwb620pcgax9dxmr1qy7a0vypsr5dw2baxm9y4k6z"; depends=[]; };
   AggregateR = derive2 { name="AggregateR"; version="0.0.2"; sha256="15gxzs3baa6f1rqwv7s7k6zybx0za1mpzc7db1n47jy9rbh2yxb2"; depends=[dummy]; };
+  AgreementInterval = derive2 { name="AgreementInterval"; version="0.1.1"; sha256="1bvinzylvsaipa8mq15f45b6h37znavlrdl0rbrx1pqw52r7z8kv"; depends=[psych]; };
   AhoCorasickTrie = derive2 { name="AhoCorasickTrie"; version="0.1.0"; sha256="0k2lcyxfsavis9g1g5293f0mw7f6jakkr11wkkjvxdlnba9c80r8"; depends=[Rcpp]; };
   Ake = derive2 { name="Ake"; version="1.0"; sha256="1dj598xfdyjqvysc39a0d5gizgk367c5lkddmwmsqa8zjmvpr15a"; depends=[]; };
   AlgDesign = derive2 { name="AlgDesign"; version="1.1-7.3"; sha256="0bl7mx4dnmkgs2x1fj7cqnrp7jx18mqwxyga0rzlniq12h8mc3fz"; depends=[]; };
   AlgebraicHaploPackage = derive2 { name="AlgebraicHaploPackage"; version="1.2"; sha256="1krm5cx609sv2p0g3xm5jaiqs9li06v717lw7ywjvx7myc9x4c07"; depends=[]; };
   AllPossibleSpellings = derive2 { name="AllPossibleSpellings"; version="1.1"; sha256="0ksfm2pfjka3yjgcd257v7sns1niaylsfxvhhh2jwdi016cpdw10"; depends=[]; };
   AlleleRetain = derive2 { name="AlleleRetain"; version="2.0.2"; sha256="0b6h5giskqbjbrk8nf29i75wrhxsjw1c87laiqzrpbp9n717bl20"; depends=[]; };
+  AlphaSimR = derive2 { name="AlphaSimR"; version="0.8.2"; sha256="0illa9y0k1xlvwmnpmgabbjqa73pl6gvvb29n97vlpbv5zkpfk8l"; depends=[BH R6 Rcpp RcppArmadillo]; };
   AlphaVantageClient = derive2 { name="AlphaVantageClient"; version="0.0.1"; sha256="095m850v945lw7i3qd812p28srdb5hdk9h52zf6bkr166zai1ni0"; depends=[httr xts]; };
   Amelia = derive2 { name="Amelia"; version="1.7.5"; sha256="1mnvms3bgc5i0v7wdmfx7nikr8wxyzmqi36sj2fz4qv5b0mf4zpa"; depends=[foreign Rcpp RcppArmadillo]; };
   AmericanCallOpt = derive2 { name="AmericanCallOpt"; version="0.95"; sha256="1nhy44j5bmmjsp6g79nrn741rzzxikhdnxk4wwbdj9igcc1bs573"; depends=[]; };
@@ -138,7 +144,7 @@ in with self; {
   AmpliconDuo = derive2 { name="AmpliconDuo"; version="1.1"; sha256="1vqpahavsksphxjyhd94dghg9ddskbfbs5vl5qcwl3jkjfvl7lwy"; depends=[ggplot2 xtable]; };
   AmyloGram = derive2 { name="AmyloGram"; version="1.1"; sha256="1xdi3i3nw4fzj4d040r55f0gid72gy3vbz5nbdrvapl97zk3kp8c"; depends=[biogram ranger seqinr shiny]; };
   AnDE = derive2 { name="AnDE"; version="1.0"; sha256="1yil8ab50wvlqmdla9kmfba8vfgy5r694r6igb58s6vnmld78yf2"; depends=[discretization foreign functional stringr]; };
-  AnaCoDa = derive2 { name="AnaCoDa"; version="0.1.1"; sha256="1v8jlyzqp9k084lzmaihp5nh7mybbgnnxnbbfkydq24b9wskfd4b"; depends=[Rcpp]; };
+  AnaCoDa = derive2 { name="AnaCoDa"; version="0.1.2"; sha256="0z7agi6992prfvc6y1gvy3j3dvy4x5xfgajgv5j76pns54sj3dl8"; depends=[Rcpp]; };
   AnalyzeFMRI = derive2 { name="AnalyzeFMRI"; version="1.1-17"; sha256="1gqhjknqq325m0ryabcdw1r3j5b9xwxg09ndqdcyw4rknc2mdzn1"; depends=[fastICA R_matlab tkrplot]; };
   AnalyzeTS = derive2 { name="AnalyzeTS"; version="2.2"; sha256="0ll4g8yzxhricz56vin8hhyplrmvjmkwfldya41vz6y6bwhywnmb"; depends=[MASS TSA tseries TTR urca]; };
   AncestryMapper = derive2 { name="AncestryMapper"; version="2.0"; sha256="1fr2y1a5rn7rq8aly94f618kywix32jwysi70nfhaqx8hf4zzprb"; depends=[svd]; };
@@ -148,23 +154,24 @@ in with self; {
   AnnuityRIR = derive2 { name="AnnuityRIR"; version="1.0-0"; sha256="0yvfqzwhm5nhywfhzkxkfm07c0qi6z21j1cdaypz89qn567aj1d9"; depends=[actuar EnvStats fitdistrplus mc2d tseries]; };
   AntAngioCOOL = derive2 { name="AntAngioCOOL"; version="1.2"; sha256="1krwms0y3xppc2y4m0az51wcbh4jq7mlr0jwinp66w8gh4k3qnp2"; depends=[caret rJava rpart RWeka]; };
   AntWeb = derive2 { name="AntWeb"; version="0.7"; sha256="1ykfg3zzjdvjppr2l4f26lx00cn5vaqhhz1j1b5yh113ggyl40qw"; depends=[assertthat httr leafletR plyr rjson]; };
-  AnthropMMD = derive2 { name="AnthropMMD"; version="2.5.0"; sha256="0pp9ihrkjwzp6zyglkp81ry4fzm1s26r687bhxswx5iz1brzmhdn"; depends=[scatterplot3d shiny smacof]; };
+  AnthropMMD = derive2 { name="AnthropMMD"; version="2.5.1"; sha256="0ria1azmxsw54h5zdfvpyw95rcvqkl3v91d80s7pqzjz6zcz7adg"; depends=[scatterplot3d shiny smacof]; };
   Anthropometry = derive2 { name="Anthropometry"; version="1.10"; sha256="1rny65070yrdxnny8frp5ryp811h59924z5pfwg0cmd2szxnxnz7"; depends=[archetypes biclust cluster depth FNN ICGE nnls rgl shapes]; };
   Aoptbdtvc = derive2 { name="Aoptbdtvc"; version="0.0.2"; sha256="1bygvf8vgzz3wa4485x2xxpk784zmw1nwsjjjysm12brrldh8zzh"; depends=[lpSolve MASS]; };
+  ApacheLogProcessor = derive2 { name="ApacheLogProcessor"; version="0.2.3"; sha256="0h4snigh1yhp34vw52h4b6qbh9c4cvwz2cx8fwvbnw6lslmg5cgv"; depends=[doParallel foreach stringr]; };
   AppliedPredictiveModeling = derive2 { name="AppliedPredictiveModeling"; version="1.1-7"; sha256="1wi0sw5w1c51rmh9z98wdpk5rgzsylkkb6g019djiwxvj92l99hh"; depends=[CORElearn ellipse lattice MASS plyr reshape2]; };
   AquaEnv = derive2 { name="AquaEnv"; version="1.0-4"; sha256="07yx7mbslqgqg7ky67n3xfhskaj7s3w5mvl7xkih48xbsdlmxi4l"; depends=[minpack_lm]; };
-  ArArRedux = derive2 { name="ArArRedux"; version="0.2"; sha256="0ql9yx46sgqkc3jd7yaw3vwg8rnykbsvpcahrgc66753kcxih04q"; depends=[]; };
+  ArArRedux = derive2 { name="ArArRedux"; version="1.0"; sha256="11h88gnj54cn5fbxf163s8kjqc1q452nzb218fjlwsxxwzaz5gbr"; depends=[]; };
   ArCo = derive2 { name="ArCo"; version="0.3-1"; sha256="1afjdmcalx3m19jlvqs83fg5qlds59l5zzg3pzk13qk31r0hz7mk"; depends=[boot glmnet Matrix]; };
   ArDec = derive2 { name="ArDec"; version="2.0"; sha256="14niggcq7xlvpdhxhy8j870gb11cpk4rwn9gwsfmcfvh49g58i80"; depends=[]; };
   ArchaeoChron = derive2 { name="ArchaeoChron"; version="0.1"; sha256="1qma2432mm73h72g9ah1k02wlcb6yrhc6mpai9nj7v58s126ffxn"; depends=[ArchaeoPhases Bchron coda rjags]; };
   ArchaeoPhases = derive2 { name="ArchaeoPhases"; version="1.3"; sha256="0012rjbk3bxf6j7p0skp02yrgqzl903dclnmm7c038f941krjcfq"; depends=[coda DT ggalt ggplot2 ggthemes hdrcde readr shiny shinythemes toOrdinal]; };
   ArfimaMLM = derive2 { name="ArfimaMLM"; version="1.3"; sha256="0s5igf703zzvagsbdxf5yv4gn0vdq51b7fvbc8xkgvlmv91yy372"; depends=[fracdiff fractal lme4]; };
   ArgumentCheck = derive2 { name="ArgumentCheck"; version="0.10.2"; sha256="0mgx7mzbg2wynixcf9hvs0i9p4zka7c3chrfvjmvvvwwgsy24hkc"; depends=[]; };
-  Arothron = derive2 { name="Arothron"; version="1.0.1"; sha256="1zqc73i4bl9mbrijmfix4rl14ljh7sj0j1bdx6d65knscjr522sr"; depends=[compositions doParallel foreach geometry Morpho rgl Rvcg stringr vegan]; };
+  Arothron = derive2 { name="Arothron"; version="1.0.2"; sha256="1nfdy0gwxm0xw0lp6245zz0ma481yf0yw4giisqpkkkg56snjjmx"; depends=[compositions doParallel foreach geometry Morpho rgl Rvcg stringr vegan]; };
   ArrayBin = derive2 { name="ArrayBin"; version="0.2"; sha256="0jlhcv2d7pmqi32w71nz063ri1yj4i4isr3msnw7ckzvi9r42jwm"; depends=[SAGx]; };
-  AsioHeaders = derive2 { name="AsioHeaders"; version="1.11.0-1"; sha256="1g226im9aakqdv5gynsl568w0mxcbfrny9lqid7pl984pq8xr8ks"; depends=[]; };
+  AsioHeaders = derive2 { name="AsioHeaders"; version="1.12.1-1"; sha256="0phcagfjxrakkap0kffclcqjspb2rmhq81k934mxgh1qz5a68ksv"; depends=[]; };
   AssayCorrector = derive2 { name="AssayCorrector"; version="2.0.0"; sha256="0d2444if5hyfbzyminnspw686r5l4pf9cdj9k48n2539vd61k452"; depends=[kSamples lattice latticeExtra RColorBrewer RVAideMemoire]; };
-  AssetCorr = derive2 { name="AssetCorr"; version="1.0.1"; sha256="1ls08p120gn7mv7nfslc08dw159d001z57xx9wkyfz7v8r27qhsy"; depends=[boot ggplot2 mvQuad mvtnorm numDeriv Rdpack VineCopula]; };
+  AssetCorr = derive2 { name="AssetCorr"; version="1.0.3"; sha256="0xcyj9xw895p4j03j9c76k7ylhkmf777akg4m90av12ad05njjbv"; depends=[boot ggplot2 mvQuad mvtnorm numDeriv Rdpack VineCopula]; };
   AssetPricing = derive2 { name="AssetPricing"; version="1.0-1"; sha256="0pbb1362dgdipbj3h50ykissl3gdqf1j1mpq53ixprvyc966c5h4"; depends=[deSolve polynom]; };
   AssocAFC = derive2 { name="AssocAFC"; version="1.0.2"; sha256="1rjiiir472dnr15xyvpn81s62nf01gl70khr8mrni65ssp5m30fb"; depends=[CompQuadForm]; };
   AssocTests = derive2 { name="AssocTests"; version="0.0-4"; sha256="1fhqzbj4aj4srkiba79w8wdyc7yy701izklxqqa7lsifnca6gn4j"; depends=[cluster combinat fExtremes mvtnorm]; };
@@ -185,23 +192,24 @@ in with self; {
   BACCT = derive2 { name="BACCT"; version="1.0"; sha256="0bpm4l27vbblzi2hhfbjw2af3ic2jbnyghkvchpq8ww43k8068iv"; depends=[ggplot2 reshape2 rjags]; };
   BACprior = derive2 { name="BACprior"; version="2.0"; sha256="1z9dvjq4lr99yp6c99bcv6n5jiiwfddfz4izcpfnnyvagfgizr8p"; depends=[boot leaps mvtnorm]; };
   BAEssd = derive2 { name="BAEssd"; version="1.0.1"; sha256="04wkhcj4wm93hvmfnnzryswaylnxz5qsgnqky9lsx4jqhvg340l6"; depends=[mvtnorm]; };
-  BALCONY = derive2 { name="BALCONY"; version="0.2.7"; sha256="1xdhldr6y3hrnp4g3zpplfcgiv0n8ci792hkaps9l47799vww03r"; depends=[Biostrings dplyr progress readr Rpdb scales seqinr]; };
-  BAMBI = derive2 { name="BAMBI"; version="2.0.0"; sha256="09ib729h3wz1gbadsrlj2y05xbdwms9m4dhwmq9dfzm9v9qpw9n0"; depends=[bridgesampling coda future future_apply gtools label_switching lattice loo mvtnorm qrng RColorBrewer Rcpp RcppArmadillo rootSolve]; };
+  BALCONY = derive2 { name="BALCONY"; version="0.2.8"; sha256="0qz7kzwglln9xa2ybxl72kkdw3ysc4wx1wxl94mzkgv01sf1bdhb"; depends=[Biostrings dplyr progress readr Rpdb scales seqinr]; };
+  BALD = derive2 { name="BALD"; version="1.0.0-3"; sha256="1azyqami07g3ax60j0ws3d1qha65k0svn2v5c9pisni0qch5xql0"; depends=[lattice logspline rjags]; };
+  BAMBI = derive2 { name="BAMBI"; version="2.0.1"; sha256="0mmigmgh37jbjnaafnisv7i30nfa605r2k3w22mpg1n3lcjdpmdk"; depends=[bridgesampling coda future_apply gtools label_switching lattice loo mvtnorm qrng RColorBrewer Rcpp RcppArmadillo rootSolve]; };
   BAMMtools = derive2 { name="BAMMtools"; version="2.1.6"; sha256="01mb40w3g0xy93pl9064ky8kd46sa7qlz6by1r6kchcfhajx8plv"; depends=[ape gplots Rcpp]; };
   BANEScarparkinglite = derive2 { name="BANEScarparkinglite"; version="0.1.2"; sha256="0yxsgk4p7i8arjkchsiml6lx97inpmaihb61787vcl8kxyx7v6wr"; depends=[dplyr httr lubridate RCurl readr rvest XML xml2 zoo]; };
   BANOVA = derive2 { name="BANOVA"; version="1.1.1"; sha256="11cvf7wjip1vn5qn9hwxvdh98i8li9ijydfywf2ks2hls2430qbk"; depends=[coda rjags rstan runjags]; };
-  BART = derive2 { name="BART"; version="1.8"; sha256="1nb1xj2v8d54fw4fppfsvai3q8csavqiksrybsc7imb4cfvdkw9h"; depends=[Rcpp survival]; };
-  BAS = derive2 { name="BAS"; version="1.5.1"; sha256="0p1pjv8nx3jkjn8j9r87lngwgwxra3hh8qj6qklppnkznly533hr"; depends=[]; };
+  BART = derive2 { name="BART"; version="1.9"; sha256="16k5cn81bywm9njvfnnid0dhq7fbmf875v4z7a3a90p0jxrgr902"; depends=[Rcpp survival]; };
+  BAS = derive2 { name="BAS"; version="1.5.2"; sha256="1h8n7599svxyvmqd6mamj75w8i1li7q4fscs50a8irv9frhv5979"; depends=[]; };
   BASIX = derive2 { name="BASIX"; version="1.1"; sha256="18dkvv1iwskfnlpl6xridcgqpalbbpm2616mvc3hfrc0b26v01id"; depends=[]; };
   BASS = derive2 { name="BASS"; version="0.2.2"; sha256="1q3sihp2iv1ikggzgd2k3vh2myz8bz31rzlaavw0n84d0h1zjxy2"; depends=[]; };
-  BASiNET = derive2 { name="BASiNET"; version="0.0.3"; sha256="0kcmc4jpiwmdydbyjfm1jx4ravxkqzvqca3p5gp26nx14xglm9hi"; depends=[Biostrings igraph randomForest rJava rmcfs RWeka]; };
-  BAT = derive2 { name="BAT"; version="1.5.6"; sha256="0m6yfxymhzi8n2l421ngy6cz3qa5v7yrd1jhpi8ymlnf8dysd57x"; depends=[nls2 raster spatstat vegan]; };
+  BASiNET = derive2 { name="BASiNET"; version="0.0.4"; sha256="0pmn4znqhpav729ai7zr027a7sx6bz2lmlk086crmwm1fnwipqq4"; depends=[Biostrings igraph randomForest rJava rmcfs RWeka]; };
+  BAT = derive2 { name="BAT"; version="1.6.0"; sha256="056ygqpbqznysjzg4z96wrgfa4bwp1lf5qrv9bp6692r3ldq0485"; depends=[hypervolume nls2 raster spatstat vegan]; };
   BAYESDEF = derive2 { name="BAYESDEF"; version="0.1.0"; sha256="030xskgqqg0n85mphjv32ks4ysvxb36f6ayy0176gps14jhmhcp7"; depends=[glmnet gWidgets readxl REdaS]; };
   BAYSTAR = derive2 { name="BAYSTAR"; version="0.2-9"; sha256="0crillww1f1jvhjw639sf09lpc3wpzd69milah143gk9zlrkhmz2"; depends=[coda mvtnorm]; };
-  BAwiR = derive2 { name="BAwiR"; version="1.1"; sha256="1wdwvghdhlld4iim49ia3k3g1rxrji8qh6jy63klglq6hb1rwx6c"; depends=[Anthropometry dplyr ggplot2 ggthemes hrbrthemes httr lubridate magrittr plyr purrr reshape2 rvest rworldmap scales stringi stringr tidyr xml2]; };
+  BAwiR = derive2 { name="BAwiR"; version="1.1.3"; sha256="0p5hjv2c86y53nmzmrrvg5d706y760r19aiqcc6jqzj9rkq3iivw"; depends=[Anthropometry dplyr ggplot2 ggthemes hrbrthemes httr lubridate magrittr plyr purrr reshape2 rvest rworldmap scales stringi stringr tidyr xml2]; };
   BB = derive2 { name="BB"; version="2014.10-1"; sha256="1lig3vxhyxy8cnic5bczms8pajmdvwr2ijad1rkdndpglving7x0"; depends=[quadprog]; };
   BBEST = derive2 { name="BBEST"; version="0.1-6"; sha256="1hvgi3679ixpq0c5qbxhkp1j0953k3lklglgxrq9mz2ry6z9n038"; depends=[DEoptim ggplot2 reshape2 shiny wmtsa]; };
-  BBI = derive2 { name="BBI"; version="0.2.0"; sha256="1mv6sh853y8p4by76637bky6yl57qyhmgqmd2n2k7r0cxg8hprcx"; depends=[vegan]; };
+  BBI = derive2 { name="BBI"; version="0.3.0"; sha256="167sndfp3776p8n9zdpihc9xhqqi8wygzpl49dzkfj53gwa77rnn"; depends=[vegan]; };
   BBMM = derive2 { name="BBMM"; version="3.0"; sha256="1cvv786wf1rr5906qg1di2krrv5jgw3dnyl8z2pvs8jyn0kb3fkj"; depends=[]; };
   BBMV = derive2 { name="BBMV"; version="2.1"; sha256="11d4wd1zx99hrhwagw73jkk088rz5vgkjml6mckssc2iqvhj1dc9"; depends=[ape]; };
   BBRecapture = derive2 { name="BBRecapture"; version="0.1"; sha256="05xzp5zjmkh0cyl47qfsz0l8drg8mimssybhycc4q69aif9scqxb"; depends=[HI lme4 locfit secr]; };
@@ -211,36 +219,37 @@ in with self; {
   BCC1997 = derive2 { name="BCC1997"; version="0.1.1"; sha256="1lqbivjkc7858jn54av1v9bzp0as43klgndbzkr59dc3l128xp12"; depends=[]; };
   BCDating = derive2 { name="BCDating"; version="0.9.7"; sha256="0z3a95sc481p0n33mhg7qlsf1jynbm1vbfds0n03bsjrwvqkzpb2"; depends=[]; };
   BCE = derive2 { name="BCE"; version="2.1"; sha256="0dqp08pbq7r88yhvlwgzzk9dcdln7awlliy5mfq18j5jhiy7axiz"; depends=[FME limSolve Matrix]; };
-  BCEA = derive2 { name="BCEA"; version="2.2-5"; sha256="0jiizwnxycbz9x8fmkcw3rcjkgg5b9fawyddf8swvx23cnfm6z8z"; depends=[MASS]; };
+  BCEA = derive2 { name="BCEA"; version="2.2-6"; sha256="1h1hgr0w6sidxfm58x6xz3i66prk5cxw6ldgfznr28pvrbgi5wsi"; depends=[MASS]; };
   BCEE = derive2 { name="BCEE"; version="1.2"; sha256="08jsnsy7l182n0gy2jy0l9a7grr62g57gz3217fzapk2im2q648b"; depends=[BMA leaps Rcpp RcppArmadillo]; };
   BCRA = derive2 { name="BCRA"; version="2.0"; sha256="1g0iix3ik2gsxpz6zp5fz2ka1y5xybs6x3r42ssnlffcmmdd9bsw"; depends=[]; };
   BCSub = derive2 { name="BCSub"; version="0.5"; sha256="0c8dlxsx23qfyygmajg2amj78ax01kb3808d9hvy7g3hkgp2i2fp"; depends=[MASS mcclust nFactors Rcpp RcppArmadillo]; };
   BCellMA = derive2 { name="BCellMA"; version="0.3.4"; sha256="1njprs7ksv0w18ffs0agz0290aa2akw48225iaa3bjhbl08dpidl"; depends=[ggplot2 reshape2]; };
   BCgee = derive2 { name="BCgee"; version="0.1"; sha256="0ad0dj2ymgvkmcmq3jlpmn0pgigdql0xgvcwsbpdydv33a6snr04"; depends=[]; };
   BClustLonG = derive2 { name="BClustLonG"; version="0.1.2"; sha256="0w35pwv3y00pmi4qjnzii3q44k7lk13x0cmh1zq3cl42gpi31p7f"; depends=[lme4 MASS mcclust Rcpp RcppArmadillo]; };
+  BDP2 = derive2 { name="BDP2"; version="0.1.3"; sha256="14m85sigx6hk0qzhfgih43m2lxp9xczmp9g3z4pping6msbnbdrz"; depends=[rmarkdown shiny shinyBS]; };
   BDWreg = derive2 { name="BDWreg"; version="1.2.0"; sha256="07j6dy69q1as1nwgp2790wzpzmjich2256cddhl7n3h2rs1dja74"; depends=[coda doParallel DWreg foreach MASS]; };
-  BDgraph = derive2 { name="BDgraph"; version="2.51"; sha256="08cc9ab7ipkxm5jxg5qyq40l58jqf5yg02igxi3xbqrb946ynqqx"; depends=[igraph Matrix]; };
-  BE = derive2 { name="BE"; version="0.1.0"; sha256="1mav5hvzsggh13szny0s0iy44di2jna523z8cjcy89s7nv2fqaag"; depends=[]; };
+  BDgraph = derive2 { name="BDgraph"; version="2.52"; sha256="11if4abx2y0x92qwadl34d44qg1qlhmgdbhfqabhirbng553szcv"; depends=[igraph Matrix]; };
+  BE = derive2 { name="BE"; version="0.1.1"; sha256="1ldzj1fvbgmnp0cn7g348md2xskm2q5b7y6l1sm3pa2am8jc7ixa"; depends=[rtf]; };
   BEACH = derive2 { name="BEACH"; version="1.2.1"; sha256="0a6xwczw3d2jnksb5lpf7j859pnyfxcab4kfv4v7lmf9iasbyyf5"; depends=[devtools DT haven plyr readxl rJava rtf sas7bdat shiny WriteXLS xtable]; };
   BEDASSLE = derive2 { name="BEDASSLE"; version="1.5"; sha256="1bz3lr0waly9vj9adwhmgs3lq7zjdkcbvm3y9rnn72qlrwmv5fbn"; depends=[emdbook MASS matrixcalc]; };
-  BEDMatrix = derive2 { name="BEDMatrix"; version="1.4.0"; sha256="0aha33skksh45fx248lx6v8cxwgkiripw3avspb8arbld9rmqwxn"; depends=[BH crochet Rcpp]; };
+  BEDMatrix = derive2 { name="BEDMatrix"; version="1.4.1"; sha256="1g92ayc6igz4qsf8g05m5628za4ipl2hy51khar0d54pkys5l1vw"; depends=[BH crochet Rcpp]; };
   BEQI2 = derive2 { name="BEQI2"; version="2.0-0"; sha256="19q29kkwww5hziffkm2yx7n4cpfcsyh0z4mljdcnjkwfp732sjig"; depends=[jsonlite knitr markdown plyr reshape2 xtable]; };
   BEST = derive2 { name="BEST"; version="0.5.1"; sha256="0yx3bkaaly0lriyd5xr7aay4c381a5iwanfixz9v37cmvs64rs4s"; depends=[coda HDInterval rjags]; };
-  BETS = derive2 { name="BETS"; version="0.4.4"; sha256="0cfndahvqdma95sbyf4r3bhf6hxplkx7dmpcx41s1mqcr0bgnxvp"; depends=[DBI digest dplyr DT dygraphs forecast foreign ggplot2 grnn htmltools httr lubridate miniUI plotly rjson rmarkdown RMySQL rstudioapi rvest seasonal shiny sqldf stringr urca webshot xml2 zoo]; };
-  BGData = derive2 { name="BGData"; version="1.0.0"; sha256="0xd7xpnvhpyvv6caxyif7wa25llvrnyzmmk4z6rp7absjqbz2alc"; depends=[BEDMatrix bigmemory bit ff LinkedMatrix symDMatrix]; };
-  BGGE = derive2 { name="BGGE"; version="0.6.3"; sha256="0i7dz1j2p3nmqad6ja5b45maa3a1wn1gsh1g7sahyqr72s2bvvkn"; depends=[]; };
-  BGLR = derive2 { name="BGLR"; version="1.0.5"; sha256="14a979rnasaklkfafzpkhr6mqv0ga7fsfxq63scpnlwa2aasgn83"; depends=[]; };
+  BETS = derive2 { name="BETS"; version="0.4.9"; sha256="0daixk7mqmk2jq35i7mjaslz11gxbnnjgwxfvj8x1s88vz9l74sm"; depends=[DBI digest dplyr DT dygraphs forecast foreign ggplot2 grnn htmltools httr lubridate miniUI plotly rjson rmarkdown RMySQL rstudioapi rvest seasonal shiny sqldf stringr urca webshot xml2 zoo]; };
+  BGData = derive2 { name="BGData"; version="2.0.0"; sha256="1jjzk81ipc7xidk21721pi761c7afnvf3qi91fv21q5ihkg5glvi"; depends=[BEDMatrix bigmemory bit crochet ff LinkedMatrix symDMatrix synchronicity]; };
+  BGGE = derive2 { name="BGGE"; version="0.6.5"; sha256="1h76c40y45xhf2vp9g0q5j9lfwh16q9axbk5c9aqn4md008xr1j2"; depends=[]; };
+  BGLR = derive2 { name="BGLR"; version="1.0.7"; sha256="061y08n4z6p013r0cqb9ff4myra5cchp6s2fgdhkw1sdlwy7ban7"; depends=[]; };
   BGPhazard = derive2 { name="BGPhazard"; version="1.2.3"; sha256="1yp92y5y3xh0hb1ring6jrma8g4q6210hm9572j8ji1jkafzxjw1"; depends=[survival]; };
   BGSIMD = derive2 { name="BGSIMD"; version="1.0"; sha256="0xkr56z8l72wps7faqi5pna1nzalc3qj09jvd3v9zy8s7zf5r7w4"; depends=[]; };
   BH = derive2 { name="BH"; version="1.66.0-1"; sha256="14kab6wp0c27d8x4jqyf065p4bj210s9b67c0bfsfjnp29aypn8p"; depends=[]; };
   BHH2 = derive2 { name="BHH2"; version="2016.05.31"; sha256="1m4fcx979nbm97hi89vbjjix0sx6qhdzs486risck9bi7yzih5k4"; depends=[]; };
   BHMSMAfMRI = derive2 { name="BHMSMAfMRI"; version="1.1"; sha256="1qygizn2np9amkm1f1332zp9ab9ky423plr9lahgwzdxn1c2c5c2"; depends=[AnalyzeFMRI fmri wavethresh]; };
-  BHTSpack = derive2 { name="BHTSpack"; version="0.4"; sha256="15a1xx2j6s94jrhlbbkriqzs7wfbh2nkz564zvmn20czmaf7v5iq"; depends=[R2HTML xtable]; };
+  BHTSpack = derive2 { name="BHTSpack"; version="0.5"; sha256="1sz99sgxhiajxca5bx2ns9g9qs9ymsvh8i5882nlp7c78qxmqc4g"; depends=[R2HTML xtable]; };
   BICORN = derive2 { name="BICORN"; version="0.1.0"; sha256="0mqk8vgp6jdk7f0paa06yqlibkd1y3vs69pg7i9mkvxmda7p4nkq"; depends=[]; };
   BIEN = derive2 { name="BIEN"; version="1.2.3"; sha256="0p23kahba55gkk6wx10ii6vrni3b7ia2a4jb64ww4kwp86bknx3d"; depends=[ape DBI rgdal rgeos RPostgreSQL sp]; };
-  BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="2.5-44"; sha256="16mgbf2jpz3fkn1gb8xcc8h45k8p74sq5gp2kk8q2g3z7gg697xh"; depends=[miceadds mitools Rcpp RcppArmadillo survey TAM]; };
+  BIFIEsurvey = derive2 { name="BIFIEsurvey"; version="2.191-12"; sha256="13my1yz7q40fg79m1klfqi0ngbfmkj0k6p8a1fvzl11xcwiszn44"; depends=[miceadds mitools Rcpp RcppArmadillo survey TAM]; };
   BIGDAWG = derive2 { name="BIGDAWG"; version="2.1"; sha256="0zvy5sl94qi20gdrnxb2lmadfy7p0wqfngjsf6jc2cgwyzk4gnrj"; depends=[haplo_stats httr knitr rmarkdown XML]; };
-  BIGL = derive2 { name="BIGL"; version="1.2.0"; sha256="1n14ar765iqafi8ckpghxrafivmpf583yckfxk07haz4186klvss"; depends=[ggplot2 MASS minpack_lm numDeriv progress rgl robustbase scales]; };
+  BIGL = derive2 { name="BIGL"; version="1.2.2"; sha256="0zrp6mrsjmac2z8syh8216zcr7yy60y4yr2xfvmd4cxdnsc198hr"; depends=[ggplot2 MASS minpack_lm numDeriv progress rgl robustbase scales]; };
   BINCOR = derive2 { name="BINCOR"; version="0.2.0"; sha256="0x2s82jql429shk70bhjdy9kamz8dz5ymsxj6kp8ga1711bpwyq6"; depends=[pracma]; };
   BIOM_utils = derive2 { name="BIOM.utils"; version="0.9"; sha256="0xckhdvf15a62awfk9rjyqbi6rm7p4awxz7vg2m7bqiqzdll80p7"; depends=[]; };
   BIOMASS = derive2 { name="BIOMASS"; version="1.2"; sha256="1d9rwgh0ws27yd0p2la7pn49sb71lh9bg4f42fpx448ah8dimw17"; depends=[httr jsonlite minpack_lm msm raster]; };
@@ -249,19 +258,21 @@ in with self; {
   BKPC = derive2 { name="BKPC"; version="1.0.1"; sha256="17gmhf6qq8jn2xzkqvjq60xzy0slz6kgfpd0d6hlpnf30ww7q923"; depends=[kernlab]; };
   BLCOP = derive2 { name="BLCOP"; version="0.3.1"; sha256="1qfkljw5b1k4b5jd08hw6dsmvgr7vg3kjyib5s13q0mkxvclasym"; depends=[fBasics fMultivar fPortfolio MASS quadprog RUnit timeSeries]; };
   BLModel = derive2 { name="BLModel"; version="1.0.2"; sha256="0l5f2v5ggadmrci3qhhmxm3j9i6jii0anq5rv5vk50y2qzii2q15"; depends=[]; };
-  BLPestimatoR = derive2 { name="BLPestimatoR"; version="0.1.5"; sha256="0wnxfyl8hz1a0k33v5nc3j1ziwcv1fnw8639l0xv92p5rn7n5nc5"; depends=[mvQuad numDeriv randtoolbox Rcpp ucminf]; };
-  BLR = derive2 { name="BLR"; version="1.4"; sha256="0wy3c8nnzkdhwb5s1ygdid47hpdx72ryim36mnicrydy0msjivja"; depends=[SuppDists]; };
+  BLOQ = derive2 { name="BLOQ"; version="0.1-0"; sha256="1ag0dy3cjdxhlspmzfdnpli030g6gwac50n5s30igcyrmw6kl4hf"; depends=[maxLik mvnmle mvtnorm]; };
+  BLPestimatoR = derive2 { name="BLPestimatoR"; version="0.2.5"; sha256="19kxvmwfa9mzq2lxlszai8zbag13m5dp600xhvwjjlmc5pg4fs3g"; depends=[Formula mvQuad numDeriv randtoolbox Rcpp RcppArmadillo]; };
+  BLR = derive2 { name="BLR"; version="1.5"; sha256="1aj4qs0zjca2ifx3y4a0s6c59lbsgracili2an5nr2rxnsl10aw6"; depends=[SuppDists]; };
   BLRPM = derive2 { name="BLRPM"; version="1.0"; sha256="15q0jkw4swz35c58nv23k8g1dy1kkbqh5aydjck7pd0fmppqrhpx"; depends=[R6]; };
   BLSM = derive2 { name="BLSM"; version="0.1.0"; sha256="02xidwp91rh34rcqd0q552wzm2j80axs1nnwwv2aj04g96lf7myj"; depends=[Rcpp RcppEigen]; };
-  BMA = derive2 { name="BMA"; version="3.18.8"; sha256="1a32ghn17ymb3zdh9xv6zvqcxc81m4y478mk6z9bfndq7ihy1ih5"; depends=[inline leaps robustbase rrcov survival]; };
+  BMA = derive2 { name="BMA"; version="3.18.9"; sha256="1lwgjswjiiyzxjpbpr61lcppgkz2d6m3vhgz7qpg33jg2mvdkvjy"; depends=[inline leaps robustbase rrcov survival]; };
   BMAmevt = derive2 { name="BMAmevt"; version="1.0.1"; sha256="1krx8isj2wp3panjcbc2ysrc2pxz2casj12qq9p18imaa326l53y"; depends=[coda]; };
-  BMRBr = derive2 { name="BMRBr"; version="0.1.0"; sha256="1z54annplzydnxvwd0rkhcw5rmfx8r99k28ld5rgh22xq3zdq825"; depends=[rvest xml2]; };
+  BMRBr = derive2 { name="BMRBr"; version="0.2.0"; sha256="0v2ysap5jfkq9fc5blqlfhsv2bs8rqybmp5z4q3g6y3y7qzhypjw"; depends=[rvest xml2]; };
   BMRV = derive2 { name="BMRV"; version="1.32"; sha256="1j1cwjk3l7f06nqdwrqdyhzm43bb8hj5wgdd14zc1grxyfc9ya95"; depends=[BH]; };
   BMS = derive2 { name="BMS"; version="0.3.4"; sha256="0z3mk1xd1fphf80kdbashkn04jwsr2bghms4d7nav3pw73q41wql"; depends=[]; };
+  BMSC = derive2 { name="BMSC"; version="0.1.1"; sha256="0dpyb01bmfa9qgrj60hdmbgp0mln96zx7ndiljwz7ylpg8myj8sl"; depends=[BH dplyr ggplot2 loo R_utils Rcpp RcppEigen rstan rstantools StanHeaders]; };
   BMT = derive2 { name="BMT"; version="0.1.0.3"; sha256="1vdah5bsn41s2qriq15xi7dw9qzngaacmn5gk6yc7hi89dwyy3yj"; depends=[fitdistrplus partitions]; };
   BMhyb = derive2 { name="BMhyb"; version="1.5.2"; sha256="0sf12xibr22i3pqdb7zay1mmgfnvqxdlimsbd8y5pi4ybiqz8bl8"; depends=[ape corpcor DEoptim geiger lhs Matrix mvtnorm numDeriv phylobase phytools TreeSim viridis]; };
   BMhyd = derive2 { name="BMhyd"; version="1.2-8"; sha256="14pv5f621zq5x9i408zjm8k80hcsabkjpdf86gk3ylgw5yqcivrx"; depends=[ape corpcor geiger mvtnorm numDeriv phylobase phytools TreeSim]; };
-  BMisc = derive2 { name="BMisc"; version="1.2.0"; sha256="0mfwa3614xgvlwl44r9p3ic34z9q9qilnhvb8p95s40xi622wphy"; depends=[formula_tools plm]; };
+  BMisc = derive2 { name="BMisc"; version="1.3.1"; sha256="0wh17bf1ii6zan09n59cf9257nb60nh08ig01id9k0bvm9f14ay6"; depends=[formula_tools plm]; };
   BNDataGenerator = derive2 { name="BNDataGenerator"; version="1.0"; sha256="17zi83jhpn9ygavkpr9haffvd4622sca18jzzxxxmfq0ilrj201g"; depends=[]; };
   BNN = derive2 { name="BNN"; version="1.0.2"; sha256="13h9xqfdqnc9d8brx1xlmvb4nrkpwncwjz98y7i3wijih85wkikd"; depends=[mvtnorm]; };
   BNPMIXcluster = derive2 { name="BNPMIXcluster"; version="1.2.4"; sha256="06s0cs3anbby93n7pjcin9195agfzfq9im6f9k7ih3cbg8mzfaqy"; depends=[gplots MASS matrixcalc mvtnorm plyr Rcpp RcppArmadillo truncnorm]; };
@@ -269,10 +280,12 @@ in with self; {
   BNPTSclust = derive2 { name="BNPTSclust"; version="1.1"; sha256="1zmxwg6zn3nqqm1sw2n4pvq47mv7ygb4lf1c6yhn3xaf1rqmf26s"; depends=[MASS mvtnorm]; };
   BNPdensity = derive2 { name="BNPdensity"; version="2017.03"; sha256="0anpi75wwx91dbm937ydgcpd8wchm0nyciy4xdhppsvzq9v3d2hp"; depends=[]; };
   BNSL = derive2 { name="BNSL"; version="0.1.3"; sha256="1918dc73gasac45kzcf4pxvl8iaawzkqdi03ny0napbjr3z8rss2"; depends=[bnlearn igraph Rcpp]; };
-  BNSP = derive2 { name="BNSP"; version="2.0.6"; sha256="0phi41khw525nsrizxak933j2hlhpkgdskvwv8yqljhvyamxgaql"; depends=[coda cubature Formula ggplot2 gridExtra plot3D plyr threejs]; };
+  BNSP = derive2 { name="BNSP"; version="2.0.8"; sha256="03pl4rvcrsd471nb56rsichzyay57ij1pqn3vvi3dpnr6rnfv4xm"; depends=[coda cubature Formula ggplot2 gridExtra mgcv plot3D plyr threejs]; };
   BOG = derive2 { name="BOG"; version="2.0"; sha256="0lz5af813b67hfl4hzcydn58sjhgn5706n2h44g488bks928k940"; depends=[DIME hash]; };
-  BOIN = derive2 { name="BOIN"; version="2.6.3"; sha256="0hvx75zjb5bj005ggj9j67p9f8hpq8p6c0ihidf3avfrirl8g98p"; depends=[Iso]; };
-  BPEC = derive2 { name="BPEC"; version="1.2.1"; sha256="142x0iw3sanvqm0n2hfba8pwndfk8l5qzhgpca9gcya7wkcmmmf7"; depends=[ape coda fields ggmap ggplot2 igraph maptools mvtnorm OpenStreetMap phytools R2G2 sp]; };
+  BOIN = derive2 { name="BOIN"; version="2.6.4"; sha256="0p1205pxa5a9sbw88fm8lbvzgzyq3mf62lsp0l2c0sfsvcfpydkg"; depends=[Iso]; };
+  BPEC = derive2 { name="BPEC"; version="1.3.0"; sha256="0chdp7g75a6hajq7h1lbl0zima22myah9a66m06zga274plakdq2"; depends=[ape coda fields ggmap ggplot2 igraph maptools mvtnorm OpenStreetMap phytools sp]; };
+  BRETIGEA = derive2 { name="BRETIGEA"; version="1.0.0"; sha256="176z7ajyfcfljv36d2sa15cvw047rsir3gn0l4lxmcyliw93r4lv"; depends=[]; };
+  BRISC = derive2 { name="BRISC"; version="0.1.0"; sha256="0fkh7wv9lf7fckh5xn4xygh6k792j8j6ax7kwqw7m4qqvl7gds44"; depends=[matrixStats pbapply RANN rdist]; };
   BRugs = derive2 { name="BRugs"; version="0.9-0"; sha256="0f0v30mvfw97vfwzkjpqzf2894b2yhksja0xhpranprk135srxp0"; depends=[coda]; };
   BSDA = derive2 { name="BSDA"; version="1.2.0"; sha256="0gs33yyca45jd4f5k5f7qid4ayw2rnl2wl7a6m7vf39dfx7ympm2"; depends=[e1071 lattice]; };
   BSGS = derive2 { name="BSGS"; version="2.0"; sha256="08m8g4zbsp55msqbic4f17lcry07mdn0f5a61zdcy2msn2ihzzf9"; depends=[batchmeans MASS plyr pscl]; };
@@ -291,7 +304,7 @@ in with self; {
   BUCSS = derive2 { name="BUCSS"; version="1.0.0"; sha256="133wsv784abrs6s1rhdi65qdrw5wx806r6pf76g3vbsf2qhk51qb"; depends=[]; };
   BVS = derive2 { name="BVS"; version="4.12.1"; sha256="111g61bpwh80v6gy44q087swcrnnnzdcibm22pzzi9jsfphy6l0c"; depends=[haplo_stats MASS msm]; };
   BVSNLP = derive2 { name="BVSNLP"; version="1.1.5"; sha256="1m6cpxm6pd831472qzj370f6q9sf416zd6ixphg3yqvvakgdznv8"; depends=[doParallel foreach Rcpp RcppArmadillo RcppEigen RcppNumerical]; };
-  BWStest = derive2 { name="BWStest"; version="0.2.1"; sha256="1kwd1s1dd21qca31np49aql839j8325y8bnxlcq84nw48vqv0jgc"; depends=[memoise Rcpp]; };
+  BWStest = derive2 { name="BWStest"; version="0.2.2"; sha256="02amzlfprmw5pyis0dg0kg0x8xqh50a4vfdcxxmklrzik3b1vzzs"; depends=[memoise Rcpp]; };
   BaBooN = derive2 { name="BaBooN"; version="0.2-0"; sha256="145q2kabjks2ql3m48sfjis5y35l8rcqnr5s176viv9yhfafn351"; depends=[coda Hmisc MASS nnet Rcpp RcppArmadillo]; };
   BaM = derive2 { name="BaM"; version="1.0.1"; sha256="0y8m6mhghlrp379swj9cfrzqcdr3a7y29mx4d6zld4is00wdw16b"; depends=[coda dlm MASS mice nnet]; };
   BaPreStoPro = derive2 { name="BaPreStoPro"; version="0.1"; sha256="0zyyyrr5h8dhjsmgaii8jmb8ignvixpc9nzbfishw9yymjswvm57"; depends=[]; };
@@ -299,24 +312,25 @@ in with self; {
   BaTFLED3D = derive2 { name="BaTFLED3D"; version="0.2.11"; sha256="0gab9iz1ra72hw8j31n97ysyr3cclhgvdxriyjk8wwv2nrmbw12h"; depends=[foreach iterators R6 RColorBrewer rTensor]; };
   BacArena = derive2 { name="BacArena"; version="1.7"; sha256="137n3nyz68v912c5nhq1qslgifb7k797f5sz567smhimzjhx842f"; depends=[deSolve ggplot2 glpkAPI igraph Matrix plyr Rcpp RcppArmadillo RcppEigen ReacTran reshape2 sybil]; };
   BalanceCheck = derive2 { name="BalanceCheck"; version="0.1"; sha256="09mkssic173glgcn592cb6zmz80kndggqc4hc800f91xnfql0332"; depends=[ade4 mvtnorm]; };
-  BalancedSampling = derive2 { name="BalancedSampling"; version="1.5.2"; sha256="0a4mb5lwjcy5d3h0ypsqmqniqx3dm64mssj65apgl48wqbm6zvv0"; depends=[Rcpp]; };
-  Ball = derive2 { name="Ball"; version="1.2.0"; sha256="1x3l3bg4mn5kvm98p1ypn7gi61q2wm1224n9d99x1pms1iqhx4zv"; depends=[gam survival]; };
+  BalancedSampling = derive2 { name="BalancedSampling"; version="1.5.4"; sha256="01vnq8n0w9h7p5xpvfdhipdqcj82in0zhj61kvcmz7jx9grx22vi"; depends=[Rcpp SamplingBigData]; };
+  Ball = derive2 { name="Ball"; version="1.3.0"; sha256="16rb4yj08dbnk3yj1d0nhr9iw2kgzjzp5cbwy8kcwc3ndhaxwdpa"; depends=[gam mvtnorm survival]; };
   BarBorGradient = derive2 { name="BarBorGradient"; version="1.0.5"; sha256="0g2g7hrm23as1xbj79g48r8sj3gsj66fmi895jqlqfbqrl2fl7a5"; depends=[]; };
   BarcodingR = derive2 { name="BarcodingR"; version="1.0-2"; sha256="1mn5rdax8v1s2z3apk9z0kzy4hw19m8ql6j91l6wd29g2n2bjqxx"; depends=[ape class nnet sp]; };
   Barnard = derive2 { name="Barnard"; version="1.8"; sha256="1ki58hjs5kpmp76kwj1qi6hwmdvjphqb1lvrlhnmkgqxg4hw4vqg"; depends=[]; };
   Barycenter = derive2 { name="Barycenter"; version="1.3.1"; sha256="0yhc0wwjqms569gnm8z2l9hgcbw8lyy437ynkij47pa4c1a1qvjy"; depends=[Rcpp RcppArmadillo]; };
   BatchExperiments = derive2 { name="BatchExperiments"; version="1.4.2"; sha256="0zvcpgzhbna6p37jlf57j7mzrvh5xs5w17janmv9v4210cpbzi1q"; depends=[backports BatchJobs BBmisc checkmate data_table DBI RSQLite]; };
-  BatchGetSymbols = derive2 { name="BatchGetSymbols"; version="2.1"; sha256="1mc35y3zxmijgywfd1qhvlpb66rzc8n6j3ynvfrg5c7z8j8592h3"; depends=[curl dplyr quantmod rvest stringr tidyr XML]; };
+  BatchGetSymbols = derive2 { name="BatchGetSymbols"; version="2.2"; sha256="0xssci49wf3jg8hhlycf9jy8mdxlizxh1hwr0xacwsbf38wvnas3"; depends=[curl dplyr lubridate quantmod rvest stringr tidyr XML]; };
   BatchJobs = derive2 { name="BatchJobs"; version="1.7"; sha256="035658marnw57p4f38g99rwmvmb6hpbq0fhlxp3qbw22zfnnkvs9"; depends=[backports BBmisc brew checkmate data_table DBI digest RSQLite sendmailR stringi]; };
   BatchMap = derive2 { name="BatchMap"; version="1.0.2.0"; sha256="0v3k4xrmsbyhzgmph8xna11dgpp10yxqmss95asrj6n814jxj19b"; depends=[ggplot2 Rcpp RcppArmadillo reshape2]; };
   BayClone2 = derive2 { name="BayClone2"; version="1.1"; sha256="1wprdj22zh8fwqawcv4m2n2y7sqwh2f6m9b0cq0rp4ll774yz30i"; depends=[combinat]; };
   BayHap = derive2 { name="BayHap"; version="1.0.1"; sha256="0xqnl2cbf0pyjlpywyy0j4mwknfn8msz4s719dsri3r7hvn9m6kd"; depends=[boa]; };
   BayHaz = derive2 { name="BayHaz"; version="0.1-3"; sha256="08ilghlkgyma5758yw7mdgqycqcillqmx73knzzdlg2kzc77dvg6"; depends=[]; };
-  BayLum = derive2 { name="BayLum"; version="0.1.2"; sha256="172ynm4z1m8dc954q4x9vwc2lyxqbwmqaxmz8v49jm8r2ifv7h8c"; depends=[ArchaeoPhases coda hexbin Luminescence rjags]; };
+  BayLum = derive2 { name="BayLum"; version="0.1.3"; sha256="0hina84s8ax01zpnji4jqqkdap0phvxr78s4rnab0407xrydbf0w"; depends=[ArchaeoPhases coda hexbin KernSmooth Luminescence rjags]; };
   BaySIC = derive2 { name="BaySIC"; version="1.0"; sha256="023ji6q1nvksmhp3ny8ad39xxccc0a1rv9iaiaagwavgzzc0pjd9"; depends=[fields poibin rjags]; };
   BayesBD = derive2 { name="BayesBD"; version="1.2"; sha256="10ik2lndqgmy6pvdm6cx4fsxgjb2fgi6hlz5ic35ab7fkpi90ka5"; depends=[jpeg mritc png Rcpp RcppArmadillo shiny]; };
   BayesBinMix = derive2 { name="BayesBinMix"; version="1.4.1"; sha256="1b18qg0mjbmrilwqffrq33gw04fzask2xgj1bp4cli51cjf2slf7"; depends=[coda doParallel foreach label_switching]; };
   BayesCR = derive2 { name="BayesCR"; version="2.1"; sha256="1qav7l64iqqdvr1v6c7hlzvbx7zbvsa55pyisvkq5rsayy1rdsl1"; depends=[mnormt mvtnorm rootSolve truncdist]; };
+  BayesCTDesign = derive2 { name="BayesCTDesign"; version="0.5.0"; sha256="0q37q2mwvg9616chr2xzgd4mrpv9rqsqq9p0lc02gi35ay7hafcp"; depends=[eha ggplot2 reshape2 survival]; };
   BayesCombo = derive2 { name="BayesCombo"; version="1.0"; sha256="01rzjja0xzvqyjivl8a9da13v13ylm4dwv4f27cmgz2znakfg5y8"; depends=[]; };
   BayesComm = derive2 { name="BayesComm"; version="0.1-2"; sha256="1rrbvwcfm93cw0m33g0zn6nyshfjc97kb3fby9cga0zaixc0a8rk"; depends=[abind coda mvtnorm Rcpp RcppArmadillo]; };
   BayesDA = derive2 { name="BayesDA"; version="2012.04-1"; sha256="0fp27cmhw8dsxr4mc1flm6qh907476kph8ch2889g9p31xm1psjc"; depends=[]; };
@@ -324,18 +338,19 @@ in with self; {
   BayesFM = derive2 { name="BayesFM"; version="0.1.2"; sha256="0fiw2x29cpv3prywsbvs1m8a588s2wpi3bwzzjisi2rafbl619xd"; depends=[checkmate coda ggplot2 gridExtra plyr]; };
   BayesFactor = derive2 { name="BayesFactor"; version="0.9.12-4.2"; sha256="1z083v7is21gm0a458jm5ph3xfdm7mh29a6sg2r1njq82f8x3s3g"; depends=[coda gtools hypergeo Matrix MatrixModels mvtnorm pbapply Rcpp RcppEigen stringr]; };
   BayesGESM = derive2 { name="BayesGESM"; version="1.4"; sha256="0qw2byb48f67461m1k8a1rqh6a0c3zq1rc4ni9xzxv8dih4wkq0f"; depends=[Formula GIGrvg normalp]; };
-  BayesGOF = derive2 { name="BayesGOF"; version="4.0"; sha256="10y36qyp674kgw08wrb6drd942314frw4ilkwna6qg6nqh07jzbk"; depends=[Bolstad2 nleqslv orthopolynom VGAM]; };
+  BayesGOF = derive2 { name="BayesGOF"; version="5.2"; sha256="17wm0228xq3db431abyi9jr0q1q86nnajsn7hmy4dwzgvrlz5s0i"; depends=[Bolstad2 nleqslv orthopolynom VGAM]; };
   BayesH = derive2 { name="BayesH"; version="1.0"; sha256="0mjd1i3rkhyq3qcalq0ing0ap0igbhyvczaihl4pcfidgs70bci3"; depends=[]; };
   BayesLCA = derive2 { name="BayesLCA"; version="1.7"; sha256="0lsqgjqal9092v1wr07p8g5cqm24k2d80sp7hlr7r1xknakmm1b6"; depends=[coda e1071 fields MCMCpack nlme]; };
   BayesMAMS = derive2 { name="BayesMAMS"; version="0.1"; sha256="1qq3j9nm0k58gpyfavz77v1dwghy8pmpk0v52cj7l8sb3a3aiinm"; depends=[mvtnorm]; };
+  BayesMallows = derive2 { name="BayesMallows"; version="0.1.1"; sha256="0z9zc3m0qiyi731z323sfafp1bj3gwvl1ii9hvb4lsk2q8n858np"; depends=[cowplot dplyr ggplot2 HDInterval igraph purrr Rcpp RcppArmadillo Rdpack relations rlang sets tidyr]; };
   BayesMed = derive2 { name="BayesMed"; version="1.0.1"; sha256="1ysc7sh0drqxbisi2dz6gj4jlw6qsd879bbhr5pra7nxgmk4h650"; depends=[MCMCpack polspline QRM R2jags]; };
   BayesMixSurv = derive2 { name="BayesMixSurv"; version="0.9.1"; sha256="19kf39881q00pap9afwvvggk4s4w3qpz17b7065nig1mvk8dnp8r"; depends=[survival]; };
   BayesNI = derive2 { name="BayesNI"; version="0.1"; sha256="0zvr6rkb5zxgl53xby69d0j3yrfnlcmac6kwkxz77q5616w9dwq0"; depends=[]; };
-  BayesNetBP = derive2 { name="BayesNetBP"; version="1.3.0"; sha256="01blqc48ssgr3dg5bk7yzwpa59n3ja1dggglwm2441dwjxf10vxx"; depends=[bnlearn doBy fields graph gRbase igraph qtl qtlnet RColorBrewer Rgraphviz]; };
+  BayesNetBP = derive2 { name="BayesNetBP"; version="1.4.0"; sha256="007anxk76rxwskc7fvbmaw7ihjnwqad0xmiy6iyv68lwrjifvpc2"; depends=[bnlearn doBy fields graph igraph qtl qtlnet RColorBrewer Rgraphviz]; };
   BayesPieceHazSelect = derive2 { name="BayesPieceHazSelect"; version="1.1.0"; sha256="0znbmv7crqycdx75jh02h6z8d6cifjszbrldv2yva4mkjxsydag5"; depends=[mvtnorm]; };
   BayesPiecewiseICAR = derive2 { name="BayesPiecewiseICAR"; version="0.2.1"; sha256="1qrmw7zmygdzz84p76hyh2d8dx88b8xhbbd7radqm39g35zq5wz6"; depends=[mvtnorm]; };
   BayesRS = derive2 { name="BayesRS"; version="0.1.3"; sha256="0fhvnckabp0z1cdsbjgv3ijnzaxwhrk83fwcflgqbhvm3a9lzr77"; depends=[coda ggplot2 metRology reshape rjags]; };
-  BayesS5 = derive2 { name="BayesS5"; version="1.30"; sha256="1nx61sq1d20238hbgr9p9hrmnxsxpsjhnb4sdhmqg1m7klq8qyrw"; depends=[abind Matrix snowfall]; };
+  BayesS5 = derive2 { name="BayesS5"; version="1.31"; sha256="1azxn3r0s52zy6y5qsa6yx331795mkk7fb28fcinv2zx9iyvk33w"; depends=[abind Matrix snowfall]; };
   BayesSAE = derive2 { name="BayesSAE"; version="1.0-2"; sha256="1xbx9hr254agpcqs1fl7qi7h19fd2bbmjszn44l566n2svgvxwf5"; depends=[coda Formula lattice]; };
   BayesSingleSub = derive2 { name="BayesSingleSub"; version="0.6.2"; sha256="0hgmyhg4mpxx7k91hbfa9h3533mqyn9rz4kl9kb30cc9g7g0m045"; depends=[coda MCMCpack mvtnorm]; };
   BayesSpec = derive2 { name="BayesSpec"; version="0.5.3"; sha256="17gchdijcjhbr2y4glbq9szjh4qmgivzh6p4fllh589da18nzjcr"; depends=[mvtnorm pscl trust]; };
@@ -350,7 +365,7 @@ in with self; {
   BayesianAnimalTracker = derive2 { name="BayesianAnimalTracker"; version="1.2"; sha256="1pgjijqznfdpvw296h5vksnxgspxs7qhy6s84ww7abnlhg59bz5s"; depends=[TrackReconstruction]; };
   BayesianGLasso = derive2 { name="BayesianGLasso"; version="0.2.0"; sha256="09yb1qqx6qlsspk3ndrcqxy0956iqznw0rmyvqxgxxp3zd3y21xp"; depends=[MASS statmod]; };
   BayesianNetwork = derive2 { name="BayesianNetwork"; version="0.1.3"; sha256="1lli3v922cvp1kwg4sllgvm4rnb972anlpl0lklqk3aqi7ff6flw"; depends=[bnlearn heatmaply lattice networkD3 plotly rintrojs shiny shinyAce shinydashboard]; };
-  BayesianTools = derive2 { name="BayesianTools"; version="0.1.4"; sha256="13imh2vc3picfy1ppzfisgkhk2n8w8s0fnhklkni06wz1816h2zd"; depends=[bridgesampling coda DHARMa ellipse emulator IDPmisc MASS Matrix msm mvtnorm numDeriv Rcpp tmvtnorm]; };
+  BayesianTools = derive2 { name="BayesianTools"; version="0.1.5"; sha256="02mwjy19y4mvqwqyc9b56l27gq40nrjq22dj7s12bip8bzqlh9gk"; depends=[bridgesampling coda DHARMa ellipse emulator IDPmisc MASS Matrix msm mvtnorm numDeriv Rcpp tmvtnorm]; };
   Bayesianbetareg = derive2 { name="Bayesianbetareg"; version="1.2"; sha256="0imsz2761ngbnap0vnxks9527la51m5g8gkkn1vrgwis43i6qcgs"; depends=[betareg mvtnorm]; };
   BaylorEdPsych = derive2 { name="BaylorEdPsych"; version="0.5"; sha256="1kq6nvzdqwawygp7k62lw5hyccsj81jg82hq60yidgxnmmnnf7y2"; depends=[]; };
   BcDiag = derive2 { name="BcDiag"; version="1.0.10"; sha256="1gyinmx5wn2kk70hiy28ghilkhfirfjbfqdrqq5h3wfb4khnq6pz"; depends=[fabia]; };
@@ -359,7 +374,7 @@ in with self; {
   BeSS = derive2 { name="BeSS"; version="1.0.5"; sha256="1gq0zfrzkh2cndly7amhjy0qnfb60lsj7izmdlf2m8h7yrcicjzv"; depends=[glmnet Matrix Rcpp RcppEigen survival]; };
   Benchmarking = derive2 { name="Benchmarking"; version="0.27"; sha256="0y31l3ddxm16sylw7p6dnv39w9ydjkjn92gi0za7s0vx07mzimxp"; depends=[lpSolveAPI ucminf]; };
   BenfordTests = derive2 { name="BenfordTests"; version="1.2.0"; sha256="1nnj0w0zwcmg7maqmmpixx7alvsyxva370ssc26ahg6kxy5a621w"; depends=[]; };
-  Bergm = derive2 { name="Bergm"; version="4.1.0"; sha256="13qdcwycppwy9qqc42zi5fz6wg4a47pfczb3nnfj1bdn2drxqw2x"; depends=[coda ergm Matrix MCMCpack mvtnorm network]; };
+  Bergm = derive2 { name="Bergm"; version="4.2.0"; sha256="04w9brzjl51nvrvyp2zn00xfcbyp1q55h4x6m7d60610fbn7f60m"; depends=[coda ergm Matrix MCMCpack mvtnorm network]; };
   Bessel = derive2 { name="Bessel"; version="0.5-5"; sha256="1apcpwqgnbsn544x2mfjkp4136xn33pijazmbzas7lr14syl5a6b"; depends=[Rmpfr]; };
   BetaBit = derive2 { name="BetaBit"; version="1.3"; sha256="1x9mfnijgi8726p82d52g2zgmliwsc97v2g96mz9ccz2vqqnwq4w"; depends=[digest]; };
   BeviMed = derive2 { name="BeviMed"; version="5.3"; sha256="01q5pr776ki973bcld20cqpsz9f10bb30vj95da9gbz5af6bvb14"; depends=[Rcpp]; };
@@ -375,12 +390,12 @@ in with self; {
   BigQuic = derive2 { name="BigQuic"; version="1.1-8"; sha256="1kg48jqm62qmz5x0h6fgvd5fs5dvg51x4spsn1q503ag4dqqdjc0"; depends=[Matrix Rcpp scalreg]; };
   BigSEM = derive2 { name="BigSEM"; version="0.2"; sha256="091fdibcxd8a8kf9k4pvc1sah830wh179f28gag9g816h4qclnx9"; depends=[MASS parcor]; };
   BigTSP = derive2 { name="BigTSP"; version="1.0"; sha256="1jdpa8rcnrhzn0hilb422pdxprdljrzpgr4f26668c1vv0kd6k4v"; depends=[gbm glmnet randomForest tree]; };
-  BigVAR = derive2 { name="BigVAR"; version="1.0.2"; sha256="14vb6nc6bn22dd112sg9zypkchmkv17gnwxs915k0k5vbb9czlr5"; depends=[lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; };
-  BimodalIndex = derive2 { name="BimodalIndex"; version="1.1.5"; sha256="08hkdpvwvi5vczc9hdzbk5qnr6s44wyf6n0xv0zbd51dqcmv2xbk"; depends=[mclust oompaBase]; };
+  BigVAR = derive2 { name="BigVAR"; version="1.0.3"; sha256="0065amdg71i9lmv7illlxgxaiyb7lvpkc68ah5vgflb6l0djisb9"; depends=[lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; };
+  BimodalIndex = derive2 { name="BimodalIndex"; version="1.1.7"; sha256="1mxyrybxxkcm6nah227cx5mhddzq6k2pf1mmm5wl7jv1br43xdm8"; depends=[mclust oompaBase]; };
   BinNonNor = derive2 { name="BinNonNor"; version="1.4"; sha256="00405ww9mh910jqww60w7cb8qbjql2jn13m60ly0bnxilg44r0bb"; depends=[BB corpcor Matrix mvtnorm]; };
   BinNor = derive2 { name="BinNor"; version="2.2"; sha256="03cggpk9fhndnk9vv5i6fzsq4wjxc5405xxlxg3l9gb618kj437f"; depends=[corpcor Matrix mvtnorm psych]; };
   BinOrdNonNor = derive2 { name="BinOrdNonNor"; version="1.4"; sha256="0qiy0wf9i9r44ycz1jl666nwpsv5yz7vzz1szdy22sk68lz984bv"; depends=[BB corpcor GenOrd Matrix mvtnorm OrdNor]; };
-  BinQuasi = derive2 { name="BinQuasi"; version="0.1-5"; sha256="1xjkxf625ggfi5nzj8kvb99xmyvva9qbvl0a3szk0aksqhqlikqi"; depends=[BiocGenerics csaw edgeR GenomicAlignments GenomicRanges IRanges mgcv pracma quadprog RMySQL Rsamtools S4Vectors SummarizedExperiment]; };
+  BinQuasi = derive2 { name="BinQuasi"; version="0.1-6"; sha256="0jf7zf3yqr2kgcm6h35234x2dqf65d2dzsh63b4q8m5l36r77k59"; depends=[BiocGenerics csaw edgeR GenomicAlignments GenomicRanges IRanges mgcv pracma quadprog RMySQL Rsamtools S4Vectors SummarizedExperiment]; };
   Binarize = derive2 { name="Binarize"; version="1.2"; sha256="014iagr76y3v7ljn6zlbg1hxwbwdi889bqxa7hwmqrcybnla22ja"; depends=[diptest]; };
   BinaryEMVS = derive2 { name="BinaryEMVS"; version="0.1"; sha256="1ainp6pg481yqhjc4f1pkxzxczbi3qm0kgq280vndq859ldfkpnh"; depends=[]; };
   BinaryEPPM = derive2 { name="BinaryEPPM"; version="2.2"; sha256="0la8mi2wadcxwrq882n4zxvihyqkp8m383c28gl9gm4fs8cqwlxi"; depends=[expm Formula lmtest numDeriv]; };
@@ -388,34 +403,35 @@ in with self; {
   BioCircos = derive2 { name="BioCircos"; version="0.3.3"; sha256="0l8kd1imb8022n631psm9na0vp502ndn2q7m3mshx9c0mnqsv8n3"; depends=[htmlwidgets jsonlite plyr RColorBrewer]; };
   BioFTF = derive2 { name="BioFTF"; version="1.2-0"; sha256="03r6fhpc4dqrcnbl73j9kav1l7rblgfldpbkl2p367vv20xggqih"; depends=[]; };
   BioGeoBEARS = derive2 { name="BioGeoBEARS"; version="0.2.1"; sha256="0wyddc5ma47ljpqipfkwsgddp12m9iy4kqwwgklyhf0rqia56b1h"; depends=[ape cladoRcpp FD gdata optimx phylobase plotrix rexpokit xtable]; };
-  BioInstaller = derive2 { name="BioInstaller"; version="0.3.3"; sha256="0mr3qyabr4pwz4cjnig5nzbq0hqqd9rmrpnhmgb1gp3c6l013yk1"; depends=[configr devtools futile_logger git2r R_utils RCurl rvest stringi stringr]; };
+  BioInstaller = derive2 { name="BioInstaller"; version="0.3.6"; sha256="03fl00f7zwq4v9i09qwnbpnnnky1nf3v91sx52xqiz710gw4awx6"; depends=[configr devtools futile_logger git2r jsonlite liteq R_utils RCurl rvest shiny stringi stringr]; };
   BioMark = derive2 { name="BioMark"; version="0.4.5"; sha256="1ifc72bayy3azbilajqqzl0is6z7l1zaadchcg3n8lhmjrv5sk3m"; depends=[glmnet MASS pls st]; };
-  BioPET = derive2 { name="BioPET"; version="0.2.1"; sha256="0pwkgffm8hlgvpk3dfzskl50kp9b4rnxc8aj119kwrmlfazhhl50"; depends=[ggplot2 gridExtra pROC VGAM]; };
+  BioPET = derive2 { name="BioPET"; version="0.2.2"; sha256="0zgq7i37d0rnjhlkcrl44x62vhz0njsv2fldm64j9r4wc02z1q9n"; depends=[ggplot2 gridExtra pROC VGAM]; };
   BioStatR = derive2 { name="BioStatR"; version="2.0.0"; sha256="1k3z337lj8r06xgrqgi5h67hhkz2s5hggj6dhcciq26i1nzafsw6"; depends=[ggplot2]; };
-  BiocManager = derive2 { name="BiocManager"; version="1.30.1"; sha256="1d7dqmkg6h02x6agc20prj8nkz061pm7f1gqizibsfz13wv5cx6w"; depends=[]; };
+  BiocManager = derive2 { name="BiocManager"; version="1.30.3"; sha256="0mfvx1xzsgiag9p42kdyqg8fvajyakrdy3z2smhdlaawzbi0qmax"; depends=[]; };
   Biocomb = derive2 { name="Biocomb"; version="0.4"; sha256="0jqfac81r5731m0i9jq7v5ns9263p8r7i03jyz10y915kfr6ikh6"; depends=[arules class e1071 FSelector gtools MASS nnet pamr pROC randomForest Rcpp rgl ROCR rpart RWeka]; };
   Biodem = derive2 { name="Biodem"; version="0.4"; sha256="0k0p4s21089wg3r3pvyy9cxsdf4ijdl598gmxynbzvwpr670qnsh"; depends=[]; };
-  BiodiversityR = derive2 { name="BiodiversityR"; version="2.9-2"; sha256="15wa7la36mfr9fi8cahvrkcd5n5gjiar66mj1c1gsaazjwqsfw6n"; depends=[Rcmdr vegan]; };
+  BiodiversityR = derive2 { name="BiodiversityR"; version="2.10-1"; sha256="009xrfpnnplr2i7z8kcxp9q924mf7x8j9pqggczynrx5lb3dlrlj"; depends=[Rcmdr vegan]; };
   Biograph = derive2 { name="Biograph"; version="2.0.6"; sha256="0vklqwbifbac3v9ws9fs22yxpqqk5b3m96qzr8j0irnimb5kgh5p"; depends=[Epi etm ggplot2 lubridate msm mstate mvna plyr reshape survival]; };
   Bioi = derive2 { name="Bioi"; version="0.2.9"; sha256="0kvqvvaws1zc3npxvl3jqidak24n5y8n98ml44mkbh7c5n296z2p"; depends=[assertthat dplyr igraph Rcpp]; };
   Biolinv = derive2 { name="Biolinv"; version="0.1-2"; sha256="0g9vw1jcsjawmddkixssm5gbncy17fdd6a3c5b2qd4hx81kxz8q9"; depends=[classInt fields raster sp spatstat]; };
   Bios2cor = derive2 { name="Bios2cor"; version="1.2"; sha256="00fzvj20x85gcpb9l6rfnm3qml8nnl365z1a68j90qi14wy6dfh6"; depends=[bigmemory bio3d circular igraph]; };
   BisRNA = derive2 { name="BisRNA"; version="0.2.2"; sha256="11jl5109nlm272vncprwplkz4kpvg7yx6yfnbjg47lfrsxcj8n0g"; depends=[MASS]; };
+  BivGeo = derive2 { name="BivGeo"; version="1.0.1"; sha256="1vdyjlcgkzpwgzzimpqspnca58xx6spfg7xy49bhmdr0d24iy76z"; depends=[]; };
   BivRegBLS = derive2 { name="BivRegBLS"; version="1.0.0"; sha256="1fi399vv54dnfywxbc8yb1r58lrl7zpqkahvcx3f5svjy20dvvbw"; depends=[ellipse]; };
   BivUnifBin = derive2 { name="BivUnifBin"; version="1.2"; sha256="0m4a2m7lvlm02hqqigwg3cd6sjzxnxqw1mchxj5g19whk34vwkwi"; depends=[BinOrdNonNor rootSolve]; };
   BivarP = derive2 { name="BivarP"; version="1.0"; sha256="08f7sphylaj3kximy1avaf29hxj2n800adsnssh01p9bcxnzb2i4"; depends=[copula dfoptim survival]; };
   Bivariate_Pareto = derive2 { name="Bivariate.Pareto"; version="1.0.2"; sha256="1clfknv56zfi9wgzi5bricchvis83mc33i5d4qk3yzf2ryzxag7q"; depends=[compound_Cox]; };
   BlakerCI = derive2 { name="BlakerCI"; version="1.0-5"; sha256="16zj678qzwqih92q19dma7a602d0hif2dhii5hvxdgjymg7hg2bj"; depends=[]; };
   BlandAltmanLeh = derive2 { name="BlandAltmanLeh"; version="0.3.1"; sha256="11p30zqb3f9ifk3v18dspg18sclz5zxjygy7hw8ccb4bcqhx68lm"; depends=[]; };
-  Blaunet = derive2 { name="Blaunet"; version="2.0.7"; sha256="19p2rqbg44pi0dz2iimjgr69zyrjf0dfsic6spph81dyrri1zyvh"; depends=[cairoDevice ergm foreign gWidgets gWidgetsRGtk2 haven network plot3D plot3Drgl rgl RGtk2 sna statnet_common]; };
+  Blaunet = derive2 { name="Blaunet"; version="2.0.8"; sha256="127nl041a1rbf8c4ffv8sbkn5y03ywaxkp51yd0sahs2anf415y4"; depends=[cairoDevice ergm foreign gWidgets gWidgetsRGtk2 haven network plot3D plot3Drgl rgl RGtk2 sna statnet_common]; };
   Blendstat = derive2 { name="Blendstat"; version="1.0.2"; sha256="04rn5yqkmqrcali75ly476x0dasysbxilynziy48mrm6q3h7xyjy"; depends=[lattice MASS]; };
   BlockCov = derive2 { name="BlockCov"; version="0.1.0"; sha256="102slm6qfhsra5fg2qzwi3ldi4xny596g2cq4csiprpkhl9qwyli"; depends=[Matrix]; };
   BlockFeST = derive2 { name="BlockFeST"; version="1.6"; sha256="0hj7a5as7nxbgjac7lbj6qfwffx3g8x8phpf9a55f1c9cdzi73a5"; depends=[BASIX]; };
   BlockMessage = derive2 { name="BlockMessage"; version="1.0"; sha256="1jrcb9j1ikbpw098gqbcj29yhffa15xav90y6vpginmhbfpwlbf4"; depends=[]; };
   Bmix = derive2 { name="Bmix"; version="0.6"; sha256="17swhn2p7jv29fkspacg2v181lkc9yd3xww2fx31xs8hsndcm857"; depends=[mvtnorm]; };
-  BoSSA = derive2 { name="BoSSA"; version="3.4"; sha256="0sv42gyv5pzn9w6bn1y361mg6x8z9h1mbgyp8yp5wbv3jl6469s6"; depends=[ape jsonlite phangorn plotrix RSQLite]; };
+  BoSSA = derive2 { name="BoSSA"; version="3.5"; sha256="1z7wspp8bk2zyxjbgfyysqbddwmygxsx51320spk50pn5svg5ckh"; depends=[ape jsonlite phangorn plotrix RSQLite]; };
   BoardGames = derive2 { name="BoardGames"; version="1.0.0"; sha256="1w3ghs29qlnjrd46lvv055snclwwy6a22fgdqszqm377w4favnhm"; depends=[]; };
-  Bolstad = derive2 { name="Bolstad"; version="0.2-38"; sha256="1535cfpn202vb037q027dy51kc4yg5g9mpn4l6x2q1pwrvnnx18f"; depends=[mvtnorm]; };
+  Bolstad = derive2 { name="Bolstad"; version="0.2-40"; sha256="1xz2x8gm27aqw1b3psjbpmzkxla8rvkvb974c3imgj71d1x0ykgm"; depends=[mvtnorm]; };
   Bolstad2 = derive2 { name="Bolstad2"; version="1.0-28"; sha256="08cfadvl9jl9278ilsf8cm2i2a3i8zsa2f3vjzw2nlv85fwi2c7v"; depends=[]; };
   BoltzMM = derive2 { name="BoltzMM"; version="0.1.1"; sha256="0jb81wn8b5lhvlkpv4rs66qdmryf57n2xmxgwl1qk0n8bfzy8ayi"; depends=[BH Rcpp RcppArmadillo]; };
   BonEV = derive2 { name="BonEV"; version="1.0"; sha256="0lmgrg53b0abb5hidyjjmwn7lf2ani84k9fil7g6j6mdajjhh1b7"; depends=[qvalue]; };
@@ -425,17 +441,18 @@ in with self; {
   BoomSpikeSlab = derive2 { name="BoomSpikeSlab"; version="1.0.0"; sha256="07cgzwcnr3z5qnm1fsc75xh9c61gljgd8s633g336dqls4b7nfan"; depends=[BH Boom]; };
   BootMRMR = derive2 { name="BootMRMR"; version="0.1"; sha256="07am80603pv1dh5ma3zb0idnslkzm5m3ym8sd1nhkh8zbc6qqmzs"; depends=[]; };
   BootPR = derive2 { name="BootPR"; version="0.60"; sha256="03zw7hz4gyhp6iq3sb03pc5k2fhvrpkspzi22zks25s1l7mq51bi"; depends=[]; };
-  BootValidation = derive2 { name="BootValidation"; version="0.1.5"; sha256="0whb13gg2zsx8gzwd1f895jai0z2xpfjifdr91kdxmzpsmw78jxj"; depends=[glmnet pbapply pROC risksetROC survival]; };
+  BootValidation = derive2 { name="BootValidation"; version="0.1.65"; sha256="1q42yqj56by3j1kmq17pjl4aq0sznhph65yxfwav39q28bf5y83r"; depends=[glmnet pbapply pROC risksetROC survival]; };
   BootWPTOS = derive2 { name="BootWPTOS"; version="1.2"; sha256="1860l11xg7444l3x42rq3636csla23gg0mi5in1zibjwn1ddc202"; depends=[fractal wavethresh]; };
-  Boruta = derive2 { name="Boruta"; version="5.3.0"; sha256="181ldma4rfd14bnq5prhhsjji1hpr4jmn69b017cs08w7k0nqdi9"; depends=[ranger]; };
+  BootstrapQTL = derive2 { name="BootstrapQTL"; version="1.0.2"; sha256="1qf93wmrh6znm81jr3gyn1sl8x4i6pdx811r70fg8k026fbfjn3a"; depends=[data_table foreach MatrixEQTL]; };
+  Boruta = derive2 { name="Boruta"; version="6.0.0"; sha256="1pp8zal1vhxlzdhl20phn39m3ffhw5glyqbcgwa0w14zw2mpm6hw"; depends=[ranger]; };
   BosonSampling = derive2 { name="BosonSampling"; version="0.1.1"; sha256="0wxn12h903a0mlrkrr3w4qd9ld2a4bifs95i98cnl2dsb76rwf12"; depends=[Rcpp RcppArmadillo]; };
   BoutrosLab_plotting_general = derive2 { name="BoutrosLab.plotting.general"; version="5.9.2"; sha256="0cyhqglz0mhfi8yk3a1qdry5ljd8rjzayqj1hyw44w9b8xsm6659"; depends=[cluster e1071 gridExtra gtable hexbin lattice latticeExtra MASS]; };
   BradleyTerry2 = derive2 { name="BradleyTerry2"; version="1.0-8"; sha256="09c6zdzf5k5x7zv5m6ygl4k5xbprlpb6s3lrq432mmv8rn2yi58z"; depends=[brglm gtools lme4 qvcalc]; };
   BradleyTerryScalable = derive2 { name="BradleyTerryScalable"; version="0.1.0"; sha256="0g12fkfs2sykyd6fzf924zv8gj2js452c4pf0pz2p6156chwrk8c"; depends=[dplyr igraph Matrix purrr Rcpp RcppArmadillo]; };
-  BrailleR = derive2 { name="BrailleR"; version="0.28.0"; sha256="0hg3858aa9zr68rd7xdc1kjapdfp5lgy8rx07qd3brljnhjaxxsz"; depends=[devtools extrafont ggplot2 gridGraphics gridSVG hunspell knitr magrittr moments nortest reticulate rmarkdown whisker XML xtable]; };
+  BrailleR = derive2 { name="BrailleR"; version="0.29.1"; sha256="0n6njampfav84yd68vi4nw8h3dm285m3wfqi048ghiw740sa4rjk"; depends=[devtools dplyr extrafont ggplot2 gridGraphics gridSVG hunspell knitr magrittr moments nortest reticulate rmarkdown roloc rolocISCCNBS whisker XML xtable]; };
   Branching = derive2 { name="Branching"; version="0.9.4"; sha256="1c209gdasm7qipv2gg4d1hr0jmhnzz5rddgjxb7xacazc0c2mhff"; depends=[]; };
-  BreedingSchemeLanguage = derive2 { name="BreedingSchemeLanguage"; version="0.9.5"; sha256="0hw9a3d2wqngvw17bgiwl7l9pn0f7pn8v3da6zz4gpf986pk8blq"; depends=[ggplot2 lme4 Matrix Rcpp rrBLUP snowfall]; };
-  Brobdingnag = derive2 { name="Brobdingnag"; version="1.2-5"; sha256="1ly9fx6mmiwrni52li0c23amsh4k36zjv9h5432igf0fgldhr3pq"; depends=[]; };
+  BreedingSchemeLanguage = derive2 { name="BreedingSchemeLanguage"; version="0.9.6"; sha256="0lj8s42ndqqllnm8v978481zqmc751v31909rir1pkwcsm3irisx"; depends=[ggplot2 lme4 Matrix Rcpp rrBLUP snowfall]; };
+  Brobdingnag = derive2 { name="Brobdingnag"; version="1.2-6"; sha256="1m3ajvcksqfck5l5hj5xiflj4ry6d896ybv4f0xxks8chgnwmv0r"; depends=[]; };
   BrownDog = derive2 { name="BrownDog"; version="0.2.1"; sha256="0wnf1jcf4cakbvj9j1l7jk9mq7gd4j1il1ha2vglghqn04f27938"; depends=[httpuv jsonlite RCurl]; };
   Brq = derive2 { name="Brq"; version="2.1"; sha256="0my9sb0761nq1ivx31k7nwpg8xidqvd0zv3lan57hnsmn7d1i7a9"; depends=[]; };
   Brundle = derive2 { name="Brundle"; version="1.0.8"; sha256="1yj196x6xb75qgi16pgg3dyjmxmjklfjcpxymaki32drhmylf24z"; depends=[DESeq2 DiffBind lattice Rsamtools]; };
@@ -444,32 +461,34 @@ in with self; {
   BurStFin = derive2 { name="BurStFin"; version="1.02"; sha256="16w2s0bg73swdps9r0i8lwvf1najiqyx7w7f91xrsfhmnqkkjzka"; depends=[]; };
   BurStMisc = derive2 { name="BurStMisc"; version="1.1"; sha256="0cyi42zkn2dby162x9f95b3hpqxbzx25s7nahb4p86r60xj3a5c0"; depends=[]; };
   BusinessDuration = derive2 { name="BusinessDuration"; version="0.2.0"; sha256="17923n1r3n8kp7qqzr2dv8ffax355yyc3b9f6mv2hxy6k31hrrb8"; depends=[chron]; };
-  BuyseTest = derive2 { name="BuyseTest"; version="1.3.2"; sha256="1wdc2w8pdjnsj2hn902zrn6d734d9y4l4cfxd4hq1m1n7ly6gnnk"; depends=[data_table doParallel foreach lava prodlim Rcpp RcppArmadillo]; };
+  BuyseTest = derive2 { name="BuyseTest"; version="1.6"; sha256="1p5v86xbcl88jmdpxzmwj5wmx6a6h8akzddb2lx03wcn759icx7v"; depends=[data_table doParallel foreach lava prodlim Rcpp RcppArmadillo]; };
   C443 = derive2 { name="C443"; version="1.0.0"; sha256="0d04769m9kkjqpj1cgfhqrri893nwi6qn7fz63z5pkym5cig5yyi"; depends=[cluster ggplot2 gridExtra igraph MASS partykit qgraph RColorBrewer reshape2 rpart]; };
   C50 = derive2 { name="C50"; version="0.1.2"; sha256="1fpspmsm62h077dkdhii23bs3sxlblabfqj4waz794ihw1b9hicg"; depends=[Cubist partykit]; };
+  CA3variants = derive2 { name="CA3variants"; version="1.0"; sha256="006r3a8jhkbgdfpycbdv3q1pfx9pkf102cgi285awgdhs6fhh88s"; depends=[ggplot2 ggrepel gridExtra]; };
   CADFtest = derive2 { name="CADFtest"; version="0.3-3"; sha256="06bwv728ckalzibxginzfica24w18m4g87i0i064m3q89ghmnlqm"; depends=[dynlm sandwich tseries urca]; };
   CADStat = derive2 { name="CADStat"; version="3.0.8"; sha256="0wdglw1vyd5gz70r9ma0mwshvizv39nb4ahp8pvr70c4qqzsfhc0"; depends=[bio_infer car gdata gmodels JavaGD JGR lattice MASS quantreg rJava rpart XML]; };
-  CAISEr = derive2 { name="CAISEr"; version="0.3.0"; sha256="00jj01hyk86f90b8krl3k8pfh98blhq6vmvnizwwhrmkzy7d7bbj"; depends=[assertthat pbmcapply]; };
+  CAISEr = derive2 { name="CAISEr"; version="0.3.3"; sha256="1jbmc2ajmvqs7i1qxx1drx6nqqwl29hxk02qmyf8iamg7ip4adqi"; depends=[assertthat pbmcapply]; };
   CALF = derive2 { name="CALF"; version="0.2.0"; sha256="12w1vr0rk6m4lv6zvqrf45k81d301ln1253wyy9xi6mv1hkabg0v"; depends=[ggplot2]; };
   CALIBERrfimpute = derive2 { name="CALIBERrfimpute"; version="1.0-1"; sha256="1xsnqyj0qdi081rdnpas9ciy9zbhdcjx3lphl6drk0bbmik3znkv"; depends=[mice mvtnorm randomForest]; };
   CAM = derive2 { name="CAM"; version="1.0"; sha256="07mmrz6j8cm6zgaw2zcxgkxb7abd651kb80526r271snjgvpr5bl"; depends=[glmnet Matrix mboost mgcv]; };
   CAMAN = derive2 { name="CAMAN"; version="0.74"; sha256="0d932fbqzlxlhn7m8zfx7wr02pc7fm8398rym1jh2cdy2fk5im08"; depends=[mvtnorm sp]; };
-  CANSIM2R = derive2 { name="CANSIM2R"; version="1.12.0"; sha256="12wnbgrcx9373n5n5wm6scsw8aq1jfrjzfh2f38asn7sxm3ky6ri"; depends=[downloader Hmisc reshape2]; };
-  CARBayes = derive2 { name="CARBayes"; version="5.0"; sha256="0kii28mf75m7ij1l0bz2w93h7m1wwq1xjvv3d3nf3ps9h8rxzi8d"; depends=[CARBayesdata coda MASS matrixcalc MCMCpack Rcpp sp spam spdep truncnorm]; };
-  CARBayesST = derive2 { name="CARBayesST"; version="2.5.2"; sha256="0jww40ghcfiq7laprdicynn1m34ykz9l9navi9rdx8p8d7k76ykc"; depends=[CARBayesdata coda dplyr MASS matrixcalc Rcpp sp spam spdep testthat truncdist truncnorm]; };
-  CARBayesdata = derive2 { name="CARBayesdata"; version="2.0"; sha256="0mlqlqm50k4lqyvbjva7vji9jqa3rwi5ky5521rp5l4nqlj53sfb"; depends=[shapefiles sp]; };
+  CANSIM2R = derive2 { name="CANSIM2R"; version="1.14.1"; sha256="1dnzbd9lyqj3w80lx12qxcsbmv8wy6hxknyi5ijp99cfv7kaq1kc"; depends=[downloader Hmisc reshape2]; };
+  CARBayes = derive2 { name="CARBayes"; version="5.1"; sha256="1jq5skrpsmj9glypy1l04wjc9bvs91wjcwmrilhrhh8mkvysravh"; depends=[CARBayesdata coda leaflet MASS matrixcalc MCMCpack Rcpp rgdal sp spam spdep truncnorm]; };
+  CARBayesST = derive2 { name="CARBayesST"; version="3.0"; sha256="1izz6lq56wlhwv7sbznckwrs7xpj2iz59g373ycbyjgwksx2k913"; depends=[CARBayesdata coda dplyr gtools leaflet MASS matrixcalc matrixStats Rcpp rgdal sp spam spdep testthat truncdist truncnorm]; };
+  CARBayesdata = derive2 { name="CARBayesdata"; version="2.1"; sha256="09rjxdrbpnqm6gv9g1jxh91jmww345wi9vlhb4s1n6b3xnh44fhs"; depends=[shapefiles sp]; };
   CARE1 = derive2 { name="CARE1"; version="1.1.0"; sha256="1zwl4zv60mrzlzfgd7n37jjlr0j918a8ji36n94s5xw8wwipiznw"; depends=[]; };
   CARLIT = derive2 { name="CARLIT"; version="1.0"; sha256="04kpjfps4ydf8fj75isqp16g1asdsyf8nszhbfkpw1zxkrmiksyp"; depends=[]; };
   CARRoT = derive2 { name="CARRoT"; version="1.0.0"; sha256="1xcvyk9id3scr629n7f3b1hxzfk5947n22s1hwdwi4njf3p7s67f"; depends=[doParallel foreach nnet Rdpack]; };
   CARS = derive2 { name="CARS"; version="0.2"; sha256="1n8p4n9fbl20jps9g9pbspw54hq9y6kqbggc8h0i9pbm1b25ngrg"; depends=[np]; };
   CARrampsOcl = derive2 { name="CARrampsOcl"; version="0.1.4"; sha256="1sdrir7h7xl1imipm9b71vca062dxqsqd8mg3w9f3s80x2aghxl8"; depends=[fields OpenCL]; };
-  CASMAP = derive2 { name="CASMAP"; version="0.5.9"; sha256="1rhvc44ngcvwlp12iawry5i4fmdkb1waldb0x3diw3jssim3n6mq"; depends=[Rcpp]; };
-  CAST = derive2 { name="CAST"; version="0.2.0"; sha256="01n4sdk6gsjz2g157h4y04rwkjxwzzsia3pqs0slnmvmf4yzr0b4"; depends=[caret ggplot2]; };
+  CASMAP = derive2 { name="CASMAP"; version="0.6.0"; sha256="1z321l34da5ggwmbggs9d8m96syra1jm29gj68lfhd7ikbpmw96w"; depends=[Rcpp]; };
+  CAST = derive2 { name="CAST"; version="0.3.0"; sha256="082xc2ic0kpp0rqyc3kh6mds2yv2n39szlmn1hf76bfnnkz1na8v"; depends=[caret ggplot2]; };
   CATT = derive2 { name="CATT"; version="2.0"; sha256="12xdspl1gbf51snyrl44nn7alfyccdfihibkgvzr66lrby8b8fhg"; depends=[]; };
   CATTexact = derive2 { name="CATTexact"; version="0.1.0"; sha256="0mklkmay9ph4d0z2l1gcg0lj429xkyhmz7srdil5rgwqxx9dnqs8"; depends=[]; };
-  CATkit = derive2 { name="CATkit"; version="3.3.2"; sha256="1yyz3dc9r2dn16q745374dpwgf56880kv0yg35h6dhmrya3xrprm"; depends=[assertr CombMSC Hmisc magic MASS png rtf season signal]; };
-  CAvariants = derive2 { name="CAvariants"; version="3.4"; sha256="1mrqvcgnxbzah7vhqqqdygds8plwswd2l8w0aq5132byhhc4kiax"; depends=[]; };
-  CBCgrps = derive2 { name="CBCgrps"; version="2.1"; sha256="0cvgcpvdvpvjkzkwapx0y4a666xq54dwm00w4w9n8fhgp05mnkn8"; depends=[nortest]; };
+  CATkit = derive2 { name="CATkit"; version="3.3.3"; sha256="01q2ssyg0jcjgahaslfgpakjsv2wil654lc6xrg5xbbrkx7ccb90"; depends=[assertr CombMSC Hmisc magic MASS png rtf season signal]; };
+  CAinterprTools = derive2 { name="CAinterprTools"; version="1.0.0"; sha256="1ia4qfvj0nzxi6pwqnha2vpfcx3qwaw4vrjqiza11sai274j0pjy"; depends=[ca classInt cluster FactoMineR ggplot2 ggrepel Hmisc RcmdrMisc reshape2]; };
+  CAvariants = derive2 { name="CAvariants"; version="3.5"; sha256="14amvfm4l219zaqi3492433j3gbhrs6dbg7smgkyp7aklnidfw5g"; depends=[ggplot2 ggrepel gridExtra rgl]; };
+  CBCgrps = derive2 { name="CBCgrps"; version="2.3"; sha256="07cy8z1fyr328jpa98sdxwd1vydx8sr93jx79hjn9hgm157240mg"; depends=[nortest]; };
   CBDA = derive2 { name="CBDA"; version="1.0.0"; sha256="0qm77vvqjgi83i8izly995ziv9ski8kgzqyq4g81i2k7a5dp8vxv"; depends=[doParallel foreach prettydoc SuperLearner]; };
   CBPS = derive2 { name="CBPS"; version="0.19"; sha256="0rb04x8lin5p6h0ziiv2zh98qvah5mkpd3qbgrmhczacavvpb8hl"; depends=[glmnet MASS MatchIt nnet numDeriv]; };
   CBT = derive2 { name="CBT"; version="1.0"; sha256="13h6sf7w03nfq2arqymwww13ywnv9xnqbqazlzn856mj3ggaqda7"; depends=[]; };
@@ -480,15 +499,15 @@ in with self; {
   CCP = derive2 { name="CCP"; version="1.1"; sha256="07jxh33pb8llk1gx4rc80ppi35z8y1gwsf19zrca9w91aahcs8cx"; depends=[]; };
   CCTpack = derive2 { name="CCTpack"; version="1.5.2"; sha256="1kkxsk9x4jz2bvldmba7fsri3zc1cjz15z0xicjmfc7lj72ngdig"; depends=[MASS mvtnorm polycor psych R2jags rjags]; };
   CCpop = derive2 { name="CCpop"; version="1.0"; sha256="10kgw3b98r0kn74w89znq6skgk8b3ldil6yb0hn5rlcf6lazjzca"; depends=[nloptr]; };
-  CDECRetrieve = derive2 { name="CDECRetrieve"; version="0.1.1"; sha256="0rxwsyr2j35f52vzpg5v4jn5qi72xn1gbqxnpsfn8c6hhmqdfjwz"; depends=[dplyr glue httr lazyeval lubridate magrittr purrr readr roxygen2 rvest stringr tibble tidyr xml2]; };
+  CDECRetrieve = derive2 { name="CDECRetrieve"; version="0.1.2"; sha256="1p8d9rwkcd2bxma9h3ccg2k4795v3ycihwh9hblymfis8ncfhr19"; depends=[dplyr glue httr lazyeval lubridate magrittr purrr readr roxygen2 rvest stringr tibble tidyr xml2]; };
   CDFt = derive2 { name="CDFt"; version="1.0.1"; sha256="0sc8ga48l3vvqfjq3ak5j1y27hgr5dw61wp0w5jpwzjz22jzqbap"; depends=[]; };
   CDLasso = derive2 { name="CDLasso"; version="1.1"; sha256="0n699y18ia2yqpk78mszgggy7jz5dybwsi2y56kdyblddcmz1yv7"; depends=[]; };
-  CDM = derive2 { name="CDM"; version="6.3-45"; sha256="159ahd17ddv0y78xrfrm1zdq5wfwav4jc26b41wd23zli1ljnlj5"; depends=[MASS mvtnorm polycor Rcpp RcppArmadillo sfsmisc]; };
+  CDM = derive2 { name="CDM"; version="6.6-5"; sha256="1gdmhpisy93672qyrbr0m2j3g5jivr3jik9405633pzq24ac8wvi"; depends=[MASS mvtnorm polycor Rcpp RcppArmadillo sfsmisc]; };
   CDNmoney = derive2 { name="CDNmoney"; version="2012.4-2"; sha256="1isbvfq0lygs75y1hn3klqms8q7g1xbkcr8fgj75h1c99d4khvm6"; depends=[]; };
   CDROM = derive2 { name="CDROM"; version="1.1"; sha256="0mvhqs4m8jp39x1rk31a1sqqmfq1avcnasgh8bizlyxx62igmi1b"; depends=[]; };
   CDVine = derive2 { name="CDVine"; version="1.4"; sha256="0cp78pb6yny4n5q2j9k6xdql588536572gbphnw8zkdmrg65qyz7"; depends=[igraph MASS mvtnorm]; };
   CDVineCopulaConditional = derive2 { name="CDVineCopulaConditional"; version="0.1.1"; sha256="1wyy324vrwipdsq0p021bj1gdhyxg09g3dkw8wv5v6rfrrs84m9k"; depends=[combinat VineCopula]; };
-  CEC = derive2 { name="CEC"; version="0.9.4"; sha256="194n190szwzxjxfdhiah1f50vp6n7f3q567yky7pq1x2hngna5rs"; depends=[]; };
+  CEC = derive2 { name="CEC"; version="0.10.2"; sha256="03fxhqlpn7x3djfanlix3yzf1cy6zf854g70gq2d93ix9gis7knv"; depends=[]; };
   CEGO = derive2 { name="CEGO"; version="2.2.0"; sha256="0k01fb8bciq3m2rcqcicrlhx6av46sdczgcyn8df1f3pr28l1fyf"; depends=[DEoptim fastmatch MASS Matrix ParamHelpers quadprog]; };
   CENFA = derive2 { name="CENFA"; version="0.1.0"; sha256="1bxrqvi67s93mvkbigb8l7rrn2j2ix7qw7vcxf4dbwd7xf3qqv6q"; depends=[doSNOW foreach magrittr pbapply raster Rcpp snow sp]; };
   CEoptim = derive2 { name="CEoptim"; version="1.2"; sha256="0bbjrhl63cbx1rsr5gclbqhjpnjid8ynk2ygaf1chf8z381n7650"; depends=[MASS msm sna]; };
@@ -500,15 +519,16 @@ in with self; {
   CHMM = derive2 { name="CHMM"; version="0.1.1"; sha256="07fdvnwhblwvljbl2z0vs42nwki67yl5ly3fj40p50k3rnqqmavj"; depends=[mclust]; };
   CHNOSZ = derive2 { name="CHNOSZ"; version="1.1.3"; sha256="07j1xvv6rn57hirxw1dajnvk9hmj3r9bgk4fckzmmpclf22z4mwq"; depends=[]; };
   CHsharp = derive2 { name="CHsharp"; version="0.4"; sha256="19mb5zzi9x4pm2z9jbha5dz4k5f1iqjv31aisyv4qh14k5ysdz2i"; depends=[KernSmooth scatterplot3d]; };
-  CIAAWconsensus = derive2 { name="CIAAWconsensus"; version="1.2"; sha256="0s3a9ay0l9n5kc6q0wb7f9625vba4giz1pdg3ikq4h4zhp1ldq62"; depends=[Matrix mvtnorm numDeriv stringr]; };
+  CIAAWconsensus = derive2 { name="CIAAWconsensus"; version="1.3"; sha256="0yhay4fp5lyf0sdcf807yvys17qz9cr5f5ikim25mq336p7fp03x"; depends=[Matrix mvtnorm numDeriv stringr]; };
   CIEE = derive2 { name="CIEE"; version="0.1.1"; sha256="03kq9cp0v41y0r2l9j5imcrsail2xsvlzhhhsrw454d4s9gqdql9"; depends=[survival]; };
   CIFsmry = derive2 { name="CIFsmry"; version="1.0.1.1"; sha256="1m2m2zvg9ghy3bm2sll7jp4xm2vw58kc5xaxd2c9k82771m3a4j0"; depends=[]; };
   CINID = derive2 { name="CINID"; version="1.2"; sha256="0pkgzi2j0045p10kjvnq8f4j1agzrqfw0czvvfrzj9yjfpj8xc99"; depends=[]; };
-  CINNA = derive2 { name="CINNA"; version="1.1.41"; sha256="1s0hcqikb02xnz6kw4aapl5dw6p1dksjnr3yhhnfw6wibbkls1hc"; depends=[centiserve circlize corrplot dendextend factoextra FactoMineR GGally ggplot2 igraph network pheatmap plyr qdapTools Rtsne sna viridis]; };
+  CINNA = derive2 { name="CINNA"; version="1.1.50"; sha256="19xh2n73b0qbnj9pihbwxkvaq96d459mj4wrkcnzbh93dj6841an"; depends=[centiserve circlize corrplot dendextend factoextra FactoMineR GGally ggplot2 igraph intergraph network pheatmap plyr qdapTools Rtsne sna viridis]; };
   CISE = derive2 { name="CISE"; version="0.1.0"; sha256="10mbi4v8dfdc9ngnrrmxpng8fnig5m8nv7799jksbcf6pnj8yv51"; depends=[far gdata glmnet MASS Matrix rARPACK]; };
   CITAN = derive2 { name="CITAN"; version="2015.12-2"; sha256="08h91q7529q04izgqw3ahm4r0zjpwnwyc0vynykvv9fz2fkbk7wb"; depends=[agop DBI hash RGtk2 RSQLite stringi]; };
   CIplot = derive2 { name="CIplot"; version="1.0"; sha256="0hx3dn7d8hvsh75747d9046iqriy3bjnchph8xllnvlhkrm4di1f"; depends=[MASS multcomp]; };
   CJAMP = derive2 { name="CJAMP"; version="0.1.0"; sha256="0kvmb8vh3dfhdavmvkfmr8293p5lgjws6p7kzmc7r9h6bzmc2hcr"; depends=[optimx]; };
+  CKLRT = derive2 { name="CKLRT"; version="0.2.3"; sha256="1d8sg3ncns3fpjaghz1h1z9nfrl31v09xijrzzsias8xjrpi191b"; depends=[MASS mgcv nlme Rcpp RcppEigen]; };
   CLA = derive2 { name="CLA"; version="0.90-1"; sha256="1rpklm21i9rjw0vfhaz9brq9571yjynwfhpv6dp6fbl3cj7bwb8g"; depends=[]; };
   CLME = derive2 { name="CLME"; version="2.0-10"; sha256="1jlib4pi3ifhfwmvd1jj4kkl6npirykhz0wlvv19nvhf3514y04s"; depends=[isotone lme4 MASS nlme openxlsx prettyR shiny stringr]; };
   CLSOCP = derive2 { name="CLSOCP"; version="1.0"; sha256="0rkwq9rl2ph4h5zwb2i3yphjyzxmh6b6k23a8gcczycx6xdq4yhw"; depends=[Matrix]; };
@@ -516,29 +536,31 @@ in with self; {
   CMF = derive2 { name="CMF"; version="1.0"; sha256="0hvqcbmg2vd0i1rjb1m1bkrbv2vkj1siank1v8w0n5b6881cyz7q"; depends=[Rcpp]; };
   CMLS = derive2 { name="CMLS"; version="1.0-0"; sha256="1542qqsl6sksrcpwhnn55d260hkbmy4ikd0v2an96yxk5w95spvn"; depends=[quadprog]; };
   CMPControl = derive2 { name="CMPControl"; version="1.0"; sha256="0cp29cibiydawsl0cq433l9abdivr16b431zlrh45wzr5kzfcs0v"; depends=[compoisson]; };
-  CMatching = derive2 { name="CMatching"; version="2.1"; sha256="172b5pzs6z8rdziqn1cq0s4zcr5hd2ql3wjslf6rv7zn9afkmjdr"; depends=[lme4 lmtest Matching multiwayvcov]; };
+  CMatching = derive2 { name="CMatching"; version="2.2.1"; sha256="0q59k84vjvn8q75skrv31jqpjf6zqghkdk1saiwn6ys8rja03m4l"; depends=[lme4 lmtest Matching multiwayvcov]; };
   CMplot = derive2 { name="CMplot"; version="3.3.1"; sha256="01qpy7bb3503i3b8v4psrxbx9ff5vzcv54j55mdr1bphwmnp1kzq"; depends=[]; };
-  CNLTreg = derive2 { name="CNLTreg"; version="0.1"; sha256="1fjc45kv2nm902vpfynfxj0n7nm2prazm44nhg2m30vd6l1ijisv"; depends=[adlift miscTools nlt]; };
-  CNLTtsa = derive2 { name="CNLTtsa"; version="0.1"; sha256="0s98ckg6ms3kh49b8la2d8rsdb0m4m0v8gdbj48nqxncdvg25qk4"; depends=[adlift CNLTreg fields nlt]; };
+  CNLTreg = derive2 { name="CNLTreg"; version="0.1-2"; sha256="07yi0ajil1113663v3gp5d3453r4l9qm442jnpydx4ygvjk7m2ha"; depends=[adlift miscTools nlt]; };
+  CNLTtsa = derive2 { name="CNLTtsa"; version="0.1-2"; sha256="1vy0jjg6s8yvsvkx4pin183y5bnikm5cmjcpa9znz9dj1w6hwr5r"; depends=[adlift CNLTreg fields nlt]; };
   CNOGpro = derive2 { name="CNOGpro"; version="1.1"; sha256="1frsmhfqrlg1vsa06cabqmrzngq4p5gqwyb9qgnsgg81a9ybm6l8"; depends=[seqinr]; };
+  CNVScope = derive2 { name="CNVScope"; version="1.9.7"; sha256="1xj82nwkv27wfwrks9rckdgmhlqfl4n0zmcqqa3f9ryx79jm7zbl"; depends=[BiocManager biomaRt blockseg BSgenome_Hsapiens_UCSC_hg19 circlize ComplexHeatmap data_table doParallel dplyr DT foreach GenomicFeatures GenomicInteractions GenomicRanges ggplot2 heatmaply HiCseg htmltools htmlwidgets igraph InteractionSet IRanges jointseg logging magrittr Matrix matrixStats numbers OpenImageR plotly plyr RCurl readr reshape2 rslurm rtracklayer S4Vectors shiny shinycssloaders shinyjs shinythemes spatialfil tidyr visNetwork]; };
   CNVassocData = derive2 { name="CNVassocData"; version="1.0"; sha256="17r3b1w9i9v6llawnjnrjns6jkd82m2cn9c90aif8j0bf4dmgdli"; depends=[]; };
   CNprep = derive2 { name="CNprep"; version="2.0"; sha256="08dpjikx3ldqzw2kwb12q0kbw15qzl09srjdfs0sz9si0x6bfxs6"; depends=[mclust rlecuyer]; };
   CNull = derive2 { name="CNull"; version="1.0"; sha256="14hy86zg18hqxi63bfzrpkz70yrzfxp2v2pva5xnrvx9dmlyz820"; depends=[ape Matrix PhyloMeasures Rcpp]; };
   COBRA = derive2 { name="COBRA"; version="0.99.4"; sha256="1r1cw12d7c148pcgcg08bfsr1q1s736kfpyyss6b4d7ny7wgmqy4"; depends=[]; };
   COCONUT = derive2 { name="COCONUT"; version="1.0.2"; sha256="1qjrhxn6dkxyimdca3nslaiw3hncfpk1pk4v01mcrnz550z001nz"; depends=[]; };
   COMBAT = derive2 { name="COMBAT"; version="0.0.4"; sha256="0m700pl33frdpc9y16y4zyh1ixpardh0r5kmz8a78jrh1acn30id"; depends=[corpcor mvtnorm]; };
+  COMBIA = derive2 { name="COMBIA"; version="1.0.6"; sha256="1640bfl5sn00czxnl6j2rrdrzc5arvfpy5b66viybxm2qqbiw49w"; depends=[gdata hash lattice latticeExtra oro_nifti]; };
   COMPoissonReg = derive2 { name="COMPoissonReg"; version="0.4.1"; sha256="14gjrf2hj7dy4hd0qnh6vqjzh7gc6g7gm7rh1d8dingkjwmjzrqb"; depends=[]; };
   CONDOP = derive2 { name="CONDOP"; version="1.0"; sha256="0si9nm93wk9lif3r6jh2nxr4sjq1iqyfavbykja3zcy6yn05i19s"; depends=[earth GenomeInfoDb GenomicRanges IRanges mclust plyr randomForest rminer S4Vectors seqinr]; };
   CONS = derive2 { name="CONS"; version="0.1.1"; sha256="0w0rca4z3hij0lbabpdnhv2lb52gx574g7bqp6q16772pi4685hf"; depends=[FactoMineR gridExtra gWidgets pander raster readxl REdaS]; };
   CORE = derive2 { name="CORE"; version="3.0"; sha256="0wq9i7nscnzqiqz6zh6hglm7924261bw169q3x6l9i6jgqhvn32d"; depends=[]; };
-  CORElearn = derive2 { name="CORElearn"; version="1.52.1"; sha256="0i37dpnphdq9pcb94rzpy80gw88zrfy8diiig94p1gdj0dk57b0f"; depends=[cluster nnet rpart]; };
+  CORElearn = derive2 { name="CORElearn"; version="1.53.1"; sha256="01jjw32awqjlvrn2wanljr3v4nphjb8mknzmz4skyhx0zgdm369x"; depends=[cluster nnet rpart]; };
   CORM = derive2 { name="CORM"; version="1.0.2"; sha256="0g5plafx2h1ija8jd6rxvy8qsrqprfbwbi1kq1p4jdr9miha20nv"; depends=[cluster limma]; };
   COSINE = derive2 { name="COSINE"; version="2.1"; sha256="10ypj849pmvhx117ph3k1jqa62nc4sdmv8665yahds7mh0ymhpjj"; depends=[genalg MASS]; };
   COUNT = derive2 { name="COUNT"; version="1.3.4"; sha256="02f7779fy0d2bql88x5v9csbxljhnyvl8wb8h83xrmwl7kaxsdpy"; depends=[MASS msme sandwich]; };
   COUSCOus = derive2 { name="COUSCOus"; version="1.0.0"; sha256="1ykqi72v8v1b3g9qy6h34dvk5fynzf1rl2mby65p08axmaba5798"; depends=[bio3d matrixcalc]; };
   CP = derive2 { name="CP"; version="1.6"; sha256="18zblf13riiz3mq3hkvg6vhiwjzpsn6mvgc2p0bqyldy98v4aisd"; depends=[survival]; };
   CPBayes = derive2 { name="CPBayes"; version="0.3.0"; sha256="1vzh9sgij194j7kiwjgba7xsqffiif9zamj9gdv2lk91wdcqaxid"; depends=[forestplot MASS]; };
-  CPE = derive2 { name="CPE"; version="1.4.4"; sha256="09sqp2a0j43jr9ya9piv8575rwd5fdvwmiz4chv75r3mw8p128mn"; depends=[rms survival]; };
+  CPE = derive2 { name="CPE"; version="1.5.1"; sha256="0n3pd6daj0mzhh547syh7nz8iys6q27igqngldb8zd4ib4778603"; depends=[rms survival]; };
   CPMCGLM = derive2 { name="CPMCGLM"; version="1.2"; sha256="07hx2ik5zg05w1h6i94398mp54q958phws9ydgp6syjqlp9dpf1p"; depends=[abind mvtnorm plyr]; };
   CPP = derive2 { name="CPP"; version="0.1.0"; sha256="1kdf43pnavjbmxkvrj78fiwl0ykln9x9ck8pcivhj9q5rsfbhbh4"; depends=[ineq kappalab mc2d]; };
   CPsurv = derive2 { name="CPsurv"; version="1.0.0"; sha256="1r68pp3jbcbwgfac132h30qx6ah780aychr49rlncn17xbdalxsh"; depends=[muhaz survival]; };
@@ -547,18 +569,19 @@ in with self; {
   CRANsearcher = derive2 { name="CRANsearcher"; version="1.0.0"; sha256="09gw1s28gb0l2cn4w3asl6zlr7wfacxwafbdrayajwckyfkjl5dl"; depends=[curl dplyr DT lubridate miniUI shiny shinyjs stringr]; };
   CREAM = derive2 { name="CREAM"; version="1.1.1"; sha256="1lccpwn6c5pmykgf689gvvpqdcilkys4vclpxjhllhanjrfhcs3q"; depends=[]; };
   CRF = derive2 { name="CRF"; version="0.3-16"; sha256="1vw8gkrhymqi7x3p257k8vvn4df4s16w8hhm1myzhcp6bf44jqg4"; depends=[Matrix]; };
-  CRM = derive2 { name="CRM"; version="1.1.1"; sha256="09h6xvqc2h2gxhdhc7592z93cnw16l549pn9i26ml0f0n20hljmf"; depends=[]; };
+  CRM = derive2 { name="CRM"; version="1.2.4"; sha256="0jv2z1y3zyj1m86p4pmqww58hj8pvid1ss6ym67y46n9srzxsmj5"; depends=[]; };
   CRPClustering = derive2 { name="CRPClustering"; version="1.2"; sha256="19m7jg6ck2gqmry2p35h3vv8msm4w1x7qwwmm746r646q7w9ylml"; depends=[dplyr lucid MASS mvtnorm png randomcoloR]; };
   CRTSize = derive2 { name="CRTSize"; version="1.0"; sha256="1d45zx26bf0zk0piham69gvb8djqf48g6iisbldv0ds3s2hhcsin"; depends=[]; };
   CRTgeeDR = derive2 { name="CRTgeeDR"; version="2.0"; sha256="1fzw8618k152b8d4d6wmzp0bfkz2grwp0rqsplwvfdx23nxq437n"; depends=[ggplot2 MASS Matrix]; };
-  CSESA = derive2 { name="CSESA"; version="1.0.4"; sha256="05nijz8x5sgmc4aykxsqg2i1n50zx0kd5lqi5a1fwxbx2miw27sv"; depends=[Biostrings]; };
-  CSFA = derive2 { name="CSFA"; version="1.1.0"; sha256="0dqva3i4jhlbjmqwngxqgl6prfs3cxb219jqc7yvjjk8n4nz8jim"; depends=[elasticnet fabia FactoMineR pls randomcoloR snowFT]; };
+  CSESA = derive2 { name="CSESA"; version="1.1.1"; sha256="1q3rdfw90kjk3incn8wzf57032f63z0p0zcdndw30s2fhv2si7bn"; depends=[Biostrings]; };
+  CSFA = derive2 { name="CSFA"; version="1.2.0"; sha256="1nkyhk8qhrrlx8v26yw86l954m4xfcxma4pqbhgw95jvqql5h3li"; depends=[elasticnet fabia FactoMineR pls randomcoloR snowFT]; };
   CSclone = derive2 { name="CSclone"; version="1.0"; sha256="0lqsqsgh2sf44fr1r7g179556v294yr1wy7x4320g7adxshrwyh5"; depends=[DNAcopy lpSolve mcclust moments]; };
-  CSeqpat = derive2 { name="CSeqpat"; version="0.1.1"; sha256="1vgwkiin485n3bks09bg4ricjfw1l8k5qfv7l0xp50zha3r18g1y"; depends=[NLP tm]; };
+  CSeqpat = derive2 { name="CSeqpat"; version="0.1.2"; sha256="1nqk873cagpn4fba4rmyzb6hni1p5lqcvsr9givrcm0gfx756w1h"; depends=[NLP tm]; };
   CTM = derive2 { name="CTM"; version="0.2"; sha256="0h1lpygjq46nwkn4km49bngvxmgrnh3csrfln3yjr9yyzs7d3lz1"; depends=[jiebaR plyr]; };
   CTRE = derive2 { name="CTRE"; version="0.1.0"; sha256="1v2327g78rva3n7lvn66rznzzf2qbdak0jp8gakgljpl30kpkv5v"; depends=[assertthat MittagLeffleR plyr tea zoo]; };
-  CTT = derive2 { name="CTT"; version="2.3.2"; sha256="1f4ba2qnxx5vlj64sxz4ynby9hv7f32v6ls8yn887z51m33xdxi8"; depends=[]; };
+  CTT = derive2 { name="CTT"; version="2.3.3"; sha256="02z354gf7rzh9xzyflmsag4hgmqgv3sr9s9ja903rwdz1pjqrlff"; depends=[]; };
   CTTShiny = derive2 { name="CTTShiny"; version="0.1"; sha256="1c9vsiqyig6kfjpy3dfrysc466h4v9530m49aynz65i1njplswyh"; depends=[CTT ltm psych shiny shinyAce]; };
+  CTTinShiny = derive2 { name="CTTinShiny"; version="0.1.0"; sha256="1dc6kaxajkvviszmrcvhh9cg2k8g1hbpf1f6fg3wlgnb80fsx9b7"; depends=[CTT foreign shiny]; };
   CUB = derive2 { name="CUB"; version="1.1.2"; sha256="031jkzh6cr8gd2naqv54xs3vlrqmcbl9d2in66kd0dr2i41l3qj7"; depends=[Formula]; };
   CUFF = derive2 { name="CUFF"; version="1.5"; sha256="1cphwhimzmsljfjvfvpld4mixznlsg5azzv7dwrgnh8q4wpnaxpc"; depends=[openxlsx xtable]; };
   CUMP = derive2 { name="CUMP"; version="2.0"; sha256="0rdscywmi4sylpjpr8r472iapddizb1mqyrd532cvw6frxins7w0"; depends=[]; };
@@ -574,10 +597,11 @@ in with self; {
   CaDENCE = derive2 { name="CaDENCE"; version="1.2.5"; sha256="1z3p5y1l67r470x6wrhnyjvw1ndppcm08fpj99x122j7kn6byff2"; depends=[pso]; };
   Cairo = derive2 { name="Cairo"; version="1.5-9"; sha256="1x1q99r3r978rlkkm5gixkv03p0mcr6k7ydcqdmisrwnmrn7p1ia"; depends=[]; };
   Calculator_LR_FNs = derive2 { name="Calculator.LR.FNs"; version="1.3"; sha256="03qg9rnz623dwnp68xhhsh9788s49n6xp0migg1nnjaqhrahlgdd"; depends=[]; };
-  CaliCo = derive2 { name="CaliCo"; version="0.1.0"; sha256="1fz4sx6wsrkmcfjjgjn7z26m266m844qz8ms4vk6bnhx0h1rp6qa"; depends=[coda DiceDesign DiceKriging FactoMineR ggplot2 MASS Matrix R6 Rcpp RcppArmadillo testthat]; };
-  CalibrateSSB = derive2 { name="CalibrateSSB"; version="1.0"; sha256="1r3318rzh29cgq72gdp16z60xkan7hyh1vj4gjg3pzbxy8zawqxx"; depends=[survey]; };
+  CaliCo = derive2 { name="CaliCo"; version="0.1.1"; sha256="16a6hfd3s7dzb6mvpyn4fkdi5irfjsbal7niky2g6p54290va982"; depends=[coda DiceDesign DiceKriging ggplot2 gridExtra gtools MASS Matrix R6 Rcpp RcppArmadillo]; };
+  CalibratR = derive2 { name="CalibratR"; version="0.1.1"; sha256="0ka7amcml15qifwpw4phpn12r9qjn0dvlrlraf3af971yjmwc745"; depends=[doParallel fitdistrplus foreach ggplot2 pROC reshape2]; };
+  CalibrateSSB = derive2 { name="CalibrateSSB"; version="1.1"; sha256="0rqa6xbxzqv0ks3i4pmmzczhf6g3ss6mb96g3d71y9xa6pzdxjjp"; depends=[survey]; };
   Canopy = derive2 { name="Canopy"; version="1.3.0"; sha256="0979hpphzhf4v71jx0shh3l8nffmpsn9l6f8ip2wxzcyx571i1wd"; depends=[ape fields pheatmap scatterplot3d]; };
-  CarletonStats = derive2 { name="CarletonStats"; version="1.3"; sha256="1a8ic2ny2zkqy6xsnzhlc3hybhk200d8jbdbjfy7jav7n757kr0y"; depends=[]; };
+  CarletonStats = derive2 { name="CarletonStats"; version="2.0"; sha256="0pgzvw6gf8kjv8ndprwp4wlgdgh5sb75ga8z5syfw57fb05v7ac3"; depends=[]; };
   CaseBasedReasoning = derive2 { name="CaseBasedReasoning"; version="0.1"; sha256="0hwll17j0br8sr0ci3bfa5rx4r36hr7myq7b5fav664zjxdh9wr4"; depends=[cowplot data_table dplyr magrittr R6 ranger Rcpp RcppArmadillo RcppParallel rms survival tidyverse]; };
   CatDyn = derive2 { name="CatDyn"; version="1.1-0"; sha256="0bdixcf1iwbmjd2axi6csrzms25ghdj4r6223qhk2b54wlmbzaiz"; depends=[BB optimx]; };
   CatEncoders = derive2 { name="CatEncoders"; version="0.1.1"; sha256="1q9wzq06lac8z9y8b65alsxpb48bw8wqmifd893kknk51xq6r9kl"; depends=[data_table Matrix]; };
@@ -596,16 +620,17 @@ in with self; {
   CerioliOutlierDetection = derive2 { name="CerioliOutlierDetection"; version="1.1.9"; sha256="0s3pd4y165v69m4wmg9jlc7dl4gz64la9yic67l3n4242wa84p19"; depends=[robustbase]; };
   CfEstimateQuantiles = derive2 { name="CfEstimateQuantiles"; version="1.0"; sha256="1qf85pnl81r0ym1mmsrhbshwi4h1iv19a2wjnghbylpjaslgxp6i"; depends=[]; };
   ChIPtest = derive2 { name="ChIPtest"; version="1.0"; sha256="1yn5b5s56k2dbhw6damxj18xbaiz180ym7fiq2i3p2gkcgwpddbz"; depends=[]; };
-  ChainLadder = derive2 { name="ChainLadder"; version="0.2.6"; sha256="0mpb7br76ng3m9g4ncx2g628zmjyf1rvi3lyxmfsmilpq6vh30n1"; depends=[actuar cplm ggplot2 lattice MASS Matrix reshape2 statmod systemfit tweedie]; };
+  ChainLadder = derive2 { name="ChainLadder"; version="0.2.7"; sha256="15d81hydbgz3j4cv4br35q9jiqlbiz8q27vylqg319y8z1p6wbgb"; depends=[actuar cplm ggplot2 lattice MASS Matrix reshape2 statmod systemfit tweedie]; };
   ChangepointTesting = derive2 { name="ChangepointTesting"; version="1.0"; sha256="1nb78b1jpp0wpy9ah2fxkh53hlmb2f82b68msbfhancb8zp2lclv"; depends=[]; };
-  ChannelAttribution = derive2 { name="ChannelAttribution"; version="1.13"; sha256="1nkz8n3a6f0xl56py45pv0rp0n0kmz3a1m616w38mjjlcypdalwq"; depends=[Rcpp RcppArmadillo]; };
+  ChannelAttribution = derive2 { name="ChannelAttribution"; version="1.14"; sha256="1rasn1ghk4k0crdvxs9l8xjajdxvjsy7rwx9gz0nf41rw8pm16qa"; depends=[Rcpp RcppArmadillo]; };
   ChannelAttributionApp = derive2 { name="ChannelAttributionApp"; version="1.1"; sha256="0qy92ij1riynz7dhri3z85pafww5w9j1gx1bcgr8phlr32a7had7"; depends=[ChannelAttribution data_table ggplot2 shiny]; };
   Chaos01 = derive2 { name="Chaos01"; version="1.1.1"; sha256="0ibxibmlyc6wkhqj2achwkwdkniin60y8xh8b80nq6ggmm7w9crw"; depends=[]; };
   ChaosGame = derive2 { name="ChaosGame"; version="0.3"; sha256="0nfp2qnhzpncs0yd5rknspin6c4hidqhxdd973ysiivg63wxwz8d"; depends=[colorRamps ggplot2 gridExtra plot3D RColorBrewer rgl sphereplot]; };
   CharFun = derive2 { name="CharFun"; version="0.1.0"; sha256="0cqy1na1lh9w3nspy68yylali9y5b64jlgh4fyzas556239dnyk7"; depends=[Bessel]; };
   ChargeTransport = derive2 { name="ChargeTransport"; version="1.0.2"; sha256="0mq06ckp3yyj5g1z2sla79fiqdk2nlbclm618frhqcgmq93h0vha"; depends=[]; };
   CheckDigit = derive2 { name="CheckDigit"; version="0.1-1"; sha256="0091q9f77a0n701n668zaghi6b2k3n2jlb1y91nghijkv32a7d0j"; depends=[]; };
-  ChemoSpec = derive2 { name="ChemoSpec"; version="4.4.97"; sha256="0kdcwv9kncv2r5mabp0mf9bmnajcnxmqavrl2lpn3d2pji6pv1qq"; depends=[plyr]; };
+  ChemoSpec = derive2 { name="ChemoSpec"; version="5.0.88"; sha256="1c2c4fd4ajnzca82c9jkp81dxgra15bhxdhzdbnxjxzfifq1gsff"; depends=[ChemoSpecUtils plyr]; };
+  ChemoSpecUtils = derive2 { name="ChemoSpecUtils"; version="0.1.62"; sha256="0yakbzyi1xdnydjixcp53rah8qcm7sg4j18ha2x1qapmzalpbr0y"; depends=[plyr RColorBrewer robustbase]; };
   ChemometricsWithR = derive2 { name="ChemometricsWithR"; version="0.1.11"; sha256="00z09bplm5qvd31y7m4b4knsrl0n27j9635m1gdak6lg4db4nxrd"; depends=[devtools kohonen MASS pls]; };
   ChoR = derive2 { name="ChoR"; version="0.0-4"; sha256="08mildsx542zfm0kcdakcv7c71hb4jgbcq1lhidf0fz76zj1pzk1"; depends=[commonsMath rJava]; };
   ChocoLattes = derive2 { name="ChocoLattes"; version="0.1.0"; sha256="0ircdar4fswaf34969gzgn83ia891jvwl29jn4s9a87cc4qagzgr"; depends=[ggplot2 knitr plotly R_utils rmarkdown WriteXLS XML]; };
@@ -619,33 +644,36 @@ in with self; {
   Cite = derive2 { name="Cite"; version="0.1.0"; sha256="1gfjirhswh4dkz88z4gl8m8jznqrvcgd4z3mnszyg1k5w3avlf1q"; depends=[miniUI RefManageR rstudioapi shiny]; };
   CityPlot = derive2 { name="CityPlot"; version="2.0"; sha256="0lskgxmagqjglvpq39hgbygkf4qp28i2bj6b4m2av1s3pzb4465g"; depends=[]; };
   CityWaterBalance = derive2 { name="CityWaterBalance"; version="0.1.0"; sha256="0nvm6bv2cxszjf33xgn1xcvhrgrgbdcar0jahwf7bs03gdlpmgi1"; depends=[dataRetrieval dplyr EcoHydRology geoknife lubridate reshape2 tgp xts zoo]; };
-  Ckmeans_1d_dp = derive2 { name="Ckmeans.1d.dp"; version="4.2.1"; sha256="1jx5419r2c55qxh4kfjdm37594bqcalqgdrqihsr8aafxhh96b8z"; depends=[]; };
+  Ckmeans_1d_dp = derive2 { name="Ckmeans.1d.dp"; version="4.2.2"; sha256="15arwppq78zvjxhvhm4kal0x0a9cwjbgmi5xhq3vch8ppwzvm2mh"; depends=[Rcpp]; };
   ClamR = derive2 { name="ClamR"; version="2.1-1"; sha256="0raz1n79g24a9mc93zj49r20xcmdziw6vvcw5sd3qyjp1ycia13c"; depends=[]; };
   ClassComparison = derive2 { name="ClassComparison"; version="3.1.6"; sha256="1y0yx3qnd5mkbqjxyfjjg2y0c0b9jjwn71z97h82ya5ci3fffndi"; depends=[Biobase oompaBase]; };
-  ClassDiscovery = derive2 { name="ClassDiscovery"; version="3.3.7"; sha256="03lp1dbp2mzrzk1hn7nkp7nm1ngs0qndlk3zz7qjh3a67x7xr5p1"; depends=[Biobase cluster mclust oompaBase oompaData]; };
+  ClassDiscovery = derive2 { name="ClassDiscovery"; version="3.3.9"; sha256="0hwaks634vg7lslb4kr5rl9p5y7n0ypp2v088a1ix9r40ag4a75p"; depends=[Biobase cluster mclust oompaBase oompaData]; };
   CleanBSequences = derive2 { name="CleanBSequences"; version="0.4.0"; sha256="12s24v2kfyc32pm34ibw58zzjqhzwlrqrkhl0m70jcqvn50b5r98"; depends=[Biostrings]; };
   ClickClust = derive2 { name="ClickClust"; version="1.1.5"; sha256="0b46f453mffg4ym6yvmh7g3v05mc9gphwfra75j28y1425s87yvw"; depends=[]; };
+  CliftLRD = derive2 { name="CliftLRD"; version="0.1-1"; sha256="0qsdv568klxg6chgw329jbfjmf6w61hly2vxp90yzdfkca03z2s4"; depends=[CNLTreg liftLRD]; };
   ClimClass = derive2 { name="ClimClass"; version="2.1.0"; sha256="1r836md31z2r5d9xckkbalzbhm4kf5paljv71kxpy53q92k7yi91"; depends=[geosphere ggplot2 reshape2]; };
   ClimDown = derive2 { name="ClimDown"; version="1.0.2"; sha256="0dbv5vn985bi9nqxhq7jcj6k38s8dlbqnln3adgd0ih2fwilvalg"; depends=[abind fields foreach ncdf4 PCICt seas udunits2]; };
+  ClimProjDiags = derive2 { name="ClimProjDiags"; version="0.0.1"; sha256="0ylw4hb8isy0ixc7ai3wda8pr67slrc5999kda688p9qi699nip4"; depends=[climdex_pcic multiApply PCICt plyr]; };
   ClinicalTrialSummary = derive2 { name="ClinicalTrialSummary"; version="0.1.0"; sha256="1lqf2ksgchl1j5hfkz7r5yczvkjgi3238k8nkfkd70nyil9vjq06"; depends=[Rcpp]; };
   CluMix = derive2 { name="CluMix"; version="2.1"; sha256="080gd6v8yj83djmf4wg7cwk6q6w6gsg4xfsgw5qd6z8h3kpyn45m"; depends=[Biobase ClustOfVar DescTools extracat FD gplots Hmisc marray Matrix]; };
-  ClueR = derive2 { name="ClueR"; version="1.3"; sha256="04axd5wrh8xszyvm6kcvhr3qs0rx9nj0z99j26qijf5w80lmhaki"; depends=[e1071]; };
+  ClueR = derive2 { name="ClueR"; version="1.4"; sha256="0awl3ag48idg0396hcgqrh5f16mbgximr5xbxjiimib5zysdc558"; depends=[e1071]; };
   ClusVis = derive2 { name="ClusVis"; version="1.1.0"; sha256="17cn3hm37jv10aybaidy89kch6814hdi8g44s94xa9li7nixzass"; depends=[MASS mgcv mvtnorm Rcpp RcppArmadillo Rmixmod VarSelLCM]; };
   ClustGeo = derive2 { name="ClustGeo"; version="2.0"; sha256="1p5k2w1k7hnacbazzj2yhxh4z2jngnsl4v5a9b3c8z1dr4nhcwxc"; depends=[sp spdep]; };
   ClustMMDD = derive2 { name="ClustMMDD"; version="1.0.4"; sha256="0sblf3crpai53dflhyi27yn6mg0xyy9dxhwsk8j57sq5vr50x686"; depends=[Rcpp]; };
   ClustOfVar = derive2 { name="ClustOfVar"; version="1.1"; sha256="0grhkab7s58ji4cf7cxh7ahd2dxrj8aqfdf3119b40zxkxbwxcr0"; depends=[PCAmixdata]; };
-  ClustVarLV = derive2 { name="ClustVarLV"; version="1.5.1"; sha256="11zydj3iq15sg84kny6nklpmh8wj9j9nklkknzfqnaagai8jgsmy"; depends=[Rcpp]; };
+  ClustVarLV = derive2 { name="ClustVarLV"; version="1.6.0"; sha256="1425qgkr4ypbgi59phb9m0haahqc9g4jvjv5lmizaxph10r6gimi"; depends=[doParallel foreach iterators Rcpp RcppEigen]; };
   Cluster_OBeu = derive2 { name="Cluster.OBeu"; version="1.2.1"; sha256="18is8aa496qr7afmyqy12s267ans0hhzy0xs8nzr3qp70mwrbbh1"; depends=[car cluster clValid data_tree dendextend jsonlite mclust RCurl reshape reshape2 stringr tibble]; };
   ClusterBootstrap = derive2 { name="ClusterBootstrap"; version="1.0.0"; sha256="0m1lfp27vn3ybwimwkrihff5v2bvdc4c46x8bha8hw0wma14lw5i"; depends=[]; };
-  ClusterR = derive2 { name="ClusterR"; version="1.1.2"; sha256="04charq9ydxiy8qvign3nc3ksg5v8d7jq39kdx7nndwgyjsidaic"; depends=[FD ggplot2 gmp gtools OpenImageR Rcpp RcppArmadillo]; };
+  ClusterR = derive2 { name="ClusterR"; version="1.1.5"; sha256="16jx47d1w8yshg2w537399ck3z5wfsazwqfbv0kmvi0iw8ss9bka"; depends=[FD ggplot2 gmp gtools OpenImageR Rcpp RcppArmadillo]; };
   ClusterRankTest = derive2 { name="ClusterRankTest"; version="1.0"; sha256="01gzalhibqcdx3a6yc2cm1v77rscva73v5m5m0qkrgqdp9c8ph2a"; depends=[]; };
   ClusterStability = derive2 { name="ClusterStability"; version="1.0.3"; sha256="1laa5m3y1rc7jr8q3i9qb3izs7qmadz169w9xm8q3mm3834ngn9b"; depends=[cluster clusterCrit copula Rcpp WeightedCluster]; };
   ClusteredMutations = derive2 { name="ClusteredMutations"; version="1.0.1"; sha256="1n31nnvpjh1faw751k8m3ga3wfl0yhdpnszwckqhfzlma1jr8z04"; depends=[seriation]; };
   CoClust = derive2 { name="CoClust"; version="0.3-2"; sha256="04xv807785xv9kdspsspx1302ardv8gda06kd590lgawjixai7dh"; depends=[copula gtools]; };
-  CoDiNA = derive2 { name="CoDiNA"; version="1.0.0"; sha256="1anc127d4xx1yks5kq2glcv8sijs0sfab9wjs7j9g1aqp97hmk33"; depends=[data_table geometry igraph magrittr plot3D plyr reshape2 visNetwork]; };
+  CoDiNA = derive2 { name="CoDiNA"; version="1.1"; sha256="0gmh5s93372hl77s46wpnxp9m2r0zzhb6m1yixpd1450mlkj7rqb"; depends=[data_table igraph magrittr plyr visNetwork]; };
   CoFRA = derive2 { name="CoFRA"; version="0.1002"; sha256="0ldf84dxaanww3qkf64mz5gv3yv2rjp9m6dy64xckds66vw6x0m3"; depends=[gplots stringr]; };
   CoImp = derive2 { name="CoImp"; version="0.3-1"; sha256="0zj152w4cvnbfl144ggs3ixmyywxf9dqhh04jfydmv2a8n6px89n"; depends=[copula gtools locfit nnet]; };
-  CodeDepends = derive2 { name="CodeDepends"; version="0.6.0"; sha256="0gyvafhqrjgy81z3b7ii8p6rxi2zaakvrxb52fnbr616lk8xlmfw"; depends=[codetools graph XML]; };
+  CoRpower = derive2 { name="CoRpower"; version="1.0.0"; sha256="1pndjv2qvnlyi8gj41qp03vwv2m4mbj5srs9038ibnmci9ngybnf"; depends=[osDesign survival]; };
+  CodeDepends = derive2 { name="CodeDepends"; version="0.6.5"; sha256="0l7kiv3awx50glf5cs841b4zzsff1ml90f0zr868ygvwsr4ps1hq"; depends=[codetools graph XML]; };
   CoinMinD = derive2 { name="CoinMinD"; version="1.1"; sha256="0invnbj5589wbs0k2w5aq9qak7axc3s0g9nw85c48lnl0v95s91i"; depends=[MCMCpack]; };
   CollapsABEL = derive2 { name="CollapsABEL"; version="0.10.11"; sha256="0libm1wv34av3vm2vvbqcnxjh4y1rwfi8qzjca8qdz9490vngags"; depends=[biganalytics bigmemory collUtils dplyr ggplot2 haplo_stats R_utils rJava RSQLite stringr]; };
   CollapseLevels = derive2 { name="CollapseLevels"; version="0.2.0"; sha256="1fn5k83lh0vw5j9vhq0x6ksbkrm25acpslav85wfyknsj9vzmzid"; depends=[dplyr ggplot2 lazyeval magrittr]; };
@@ -659,7 +687,7 @@ in with self; {
   CombinePortfolio = derive2 { name="CombinePortfolio"; version="0.3"; sha256="0w4mw748ix7jyqfirr8bm93i742y7bpir7q5x1j3r9cqpi9h5zfv"; depends=[]; };
   CommEcol = derive2 { name="CommEcol"; version="1.6.5"; sha256="02xra47znnbnsgxy6xinyk2dv8asshd4fgh7bn6qf7m6p4d743pj"; depends=[ape gmp picante vegan]; };
   CommT = derive2 { name="CommT"; version="0.1.1"; sha256="1kimm8z3k7p5lxsjnkb203js2rqn09grywxs890fab1hhgssgv2r"; depends=[ape ggplot2 gridExtra phangorn reshape]; };
-  CommonJavaJars = derive2 { name="CommonJavaJars"; version="1.0-5"; sha256="0kwf504g1izyy7hxss21dgz26w0spxibdlacrjdh7q10z799hfhh"; depends=[]; };
+  CommonJavaJars = derive2 { name="CommonJavaJars"; version="1.0-6"; sha256="0l1zqygklv1s3xr6pjjrji3wmyqg7258qvgwf9c2qjim8p8y8lsr"; depends=[]; };
   CommonTrend = derive2 { name="CommonTrend"; version="0.7-1"; sha256="088pg2hy2g2jgs84xawrnsf7gpvrpqjsimkx7g0i5r5fmkx169f9"; depends=[MASS urca]; };
   CommunityCorrelogram = derive2 { name="CommunityCorrelogram"; version="1.0"; sha256="1wkrm5lil595sc4ih3qsf4sgvfipzlav0n7339ixqw9zxm2pg4nj"; depends=[vegan]; };
   Comp2ROC = derive2 { name="Comp2ROC"; version="1.1.4"; sha256="06hpbid9z1pzg7k4gqp2zn8l7sm375z32fsn54i27qbl3inp7m2d"; depends=[boot ROCR]; };
@@ -682,38 +710,38 @@ in with self; {
   CondReg = derive2 { name="CondReg"; version="0.20"; sha256="1ffnrjfjcb66i9nyvidkcn4k9pcj4r7xanjwzcxcrj2qm39apkqx"; depends=[]; };
   ConfigParser = derive2 { name="ConfigParser"; version="1.0.0"; sha256="0jjh6gz5qcqhirzkmg7a4lnf8n3mjly15x2mvbvdpjkk7iv3w9m3"; depends=[ini R6]; };
   ConfoundedMeta = derive2 { name="ConfoundedMeta"; version="1.3.0"; sha256="17l6dfff2v0a4p022qclrmkzi78ga9adkgxgrgk9imz0n9m9424d"; depends=[ggplot2 metafor]; };
-  Conigrave = derive2 { name="Conigrave"; version="0.3.0"; sha256="15zfaivawk83xr6gx5ij1xc43z5vgci8x0hglxjnhla02zn0zh9f"; depends=[ggplot2 magrittr miceadds mitools stringdist]; };
+  Conigrave = derive2 { name="Conigrave"; version="0.4.1"; sha256="0gralyfz3vq81b34s81mjmblkpbigjqb6r4wkz53xfkd4dbqlchc"; depends=[dplyr ggplot2 magrittr miceadds mitools ppcor stringdist stringr]; };
   ConjointChecks = derive2 { name="ConjointChecks"; version="0.0.9"; sha256="097mhiz8zjmmkiiapr3zfx7v35xirg57nqp1swd72dixaa23nhr1"; depends=[]; };
   ConnMatTools = derive2 { name="ConnMatTools"; version="0.3.3"; sha256="0zsn3al3di0fd9hkqljpqqy4zbmh97xr6cdi4fzv80ax81fjfqyk"; depends=[]; };
   ConsRank = derive2 { name="ConsRank"; version="2.0.1"; sha256="18f1gqa46f8jrcf2zj4njyy78cl0scjs9k8s9mvg0f9dpr44xnan"; depends=[gtools proxy rgl]; };
-  ContaminatedMixt = derive2 { name="ContaminatedMixt"; version="1.3.2"; sha256="0761wfjxh26kf4q1qcfzfaj52553yiw1ny6l84r3wzzx4hv893qy"; depends=[caret mclust mixture mnormt mvtnorm]; };
+  ContaminatedMixt = derive2 { name="ContaminatedMixt"; version="1.3.3"; sha256="16pkpgvg46xscp6z2xlhlnfzc9048jlgqxxbqa4c90z7dclcmrqk"; depends=[caret mclust mixture mnormt mvtnorm]; };
   ContourFunctions = derive2 { name="ContourFunctions"; version="0.1.0"; sha256="1hlff3wx8r1wpkhrz0n27wjnzy6z2q8s9smyb906gwwa9xga7njy"; depends=[]; };
   ConvergenceClubs = derive2 { name="ConvergenceClubs"; version="1.4.1"; sha256="0f74aaglby4hmg72957cj3y7jdchy5kq793skl7yidrjc1nk04ib"; depends=[lmtest sandwich]; };
   ConvergenceConcepts = derive2 { name="ConvergenceConcepts"; version="1.2.1"; sha256="0kl67ds6369mxl2i93h43r00ji12qkg0k9m4jhcxsb0ydd8rfqgp"; depends=[lattice tkrplot]; };
-  CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="1.0-7"; sha256="00x2ijyg1bj2xp679i453d4fd58qp7mfj3pvv3cddh0hl8yfns18"; depends=[geosphere ggplot2 raster rgeos rnaturalearth sp]; };
-  Copula_Markov = derive2 { name="Copula.Markov"; version="1.1"; sha256="0pgzrgd9bzf2qh9b7h0y4mmszlxk1wxdwlid3xh7rk7pif3mw3qd"; depends=[]; };
+  CoordinateCleaner = derive2 { name="CoordinateCleaner"; version="2.0-3"; sha256="1kb21a8mp3blgnvyzqcwh1zz1mkdq6c759g9dlw3dzp2gnpzl5zp"; depends=[dplyr geosphere ggplot2 raster rgdal rgeos rnaturalearth sp tidyselect]; };
+  Copula_Markov = derive2 { name="Copula.Markov"; version="2.1"; sha256="09036bnxb0r0k6lk6sb258yrw4q458nmxinmvnishnq5bifps4v4"; depends=[]; };
   CopulaDTA = derive2 { name="CopulaDTA"; version="1.0.0"; sha256="1bx0jvlbhaxf4yhrfpd5l5zp7kmp6f17ckb1y9974sgc7s3hpqcd"; depends=[ggplot2 plyr reshape2 rstan]; };
   CopulaREMADA = derive2 { name="CopulaREMADA"; version="1.1"; sha256="044si0nwniiglrcg6mjvs4z3hk6hhhsy49c6pigy6yf1wvvqxp4m"; depends=[matlab statmod tensor]; };
   CopulaRegression = derive2 { name="CopulaRegression"; version="0.1-5"; sha256="0dd1n7b23yww36718khi6a5kgy8qjpkrh0k433c265653mf1siq8"; depends=[MASS VineCopula]; };
-  CopyDetect = derive2 { name="CopyDetect"; version="1.2"; sha256="1sahrlg1gk1q8ciq0a8hxrlyci5i8jxz8pjpy04alckxdrxfpqbi"; depends=[irtoys]; };
+  CopyDetect = derive2 { name="CopyDetect"; version="1.3"; sha256="1g3bwd805h62x93xvvn67acf9v6vn7s7ghxpvjhwcfdfj7fwzh6l"; depends=[mirt]; };
+  CorDiff = derive2 { name="CorDiff"; version="1.0"; sha256="12rgfhygrdq1ign4ybr8g171wxic8zbp83n1xdsnqpj910k5jdr5"; depends=[mcc]; };
   CorReg = derive2 { name="CorReg"; version="1.2.8"; sha256="18l9aiv2ipvs14ycnzq99yvnkws38wnj42zbk5jqgv33kn37qbx2"; depends=[corrplot elasticnet glmnet lars MASS Matrix mclust mvtnorm Rcpp RcppEigen Rmixmod rpart]; };
-  CorShrink = derive2 { name="CorShrink"; version="0.1-5"; sha256="03g5njb191nqiy0lmk8jrwyrnl3w733b8h0krkbsjh2zravyw1xc"; depends=[ashr corpcor corrplot gridExtra Matrix reshape2]; };
+  CorShrink = derive2 { name="CorShrink"; version="0.1-6"; sha256="15ay6ws9216lv15mpgldank3klw3zz5j4nwvv1s88jjfn2ln5c1l"; depends=[ashr corpcor corrplot glmnet gridExtra MASS Matrix reshape2 SQUAREM]; };
   Corbi = derive2 { name="Corbi"; version="0.4-2"; sha256="0h088iplryaipnfp8svw3djh016z23lv66q51gfbqpvchvjdwypw"; depends=[CRF Matrix mpmi]; };
   CorporaCoCo = derive2 { name="CorporaCoCo"; version="1.1-0"; sha256="1s3wlcy6mnw9riivw5lc4gd6bjbsd77m15ipr95g46isdcrli8zb"; depends=[data_table RColorBrewer rlist]; };
   CorrBin = derive2 { name="CorrBin"; version="1.5"; sha256="1kg8kms76z127j2vmf7v162n0sh2jqylw4i7c35x5sig4q22m9gy"; depends=[boot combinat dirmult geepack mvtnorm]; };
   CorrMixed = derive2 { name="CorrMixed"; version="0.1-13"; sha256="02zg5kmv5qxnasnz872r3z7x7dmdcniq1x5xyfnnb3niwkdjgxzx"; depends=[nlme psych]; };
   CorrToolBox = derive2 { name="CorrToolBox"; version="1.5"; sha256="1ggrm144zmi54cqb5l2nif7dn1zb1kn31i1xhxc4jwr7fn380iyi"; depends=[BinNonNor BinOrdNonNor GenOrd moments mvtnorm psych]; };
-  CorrectOverloadedPeaks = derive2 { name="CorrectOverloadedPeaks"; version="1.2.14"; sha256="1if4qb1d6mg3435pk3znln8id8fj12n3j9sjv4zn104v2fr90mhr"; depends=[caTools digest xcms XML]; };
+  CorrectOverloadedPeaks = derive2 { name="CorrectOverloadedPeaks"; version="1.2.15"; sha256="1hdr2zdms6vbnf6xw079c127diygzp09vqizmmh0yrbc5sx2cmb8"; depends=[bitops digest xcms XML]; };
   CorrectedFDR = derive2 { name="CorrectedFDR"; version="1.0"; sha256="15047cfjniljzhznkbzq3hyq221y9k7fa04f69zm0k0sxr627gxg"; depends=[]; };
   Correlplot = derive2 { name="Correlplot"; version="1.0-2"; sha256="0prxnbi7ga5d23i0i4qpynfb3zrsgjxam47km6nsj1prakdkrq7w"; depends=[calibrate xtable]; };
   CosW = derive2 { name="CosW"; version="0.1"; sha256="12l4w8b5jnr8773hxk7khrdn705x6bdbw7s8z8w95bfbbi12dj6v"; depends=[fdrtool pracma]; };
-  CosmoPhotoz = derive2 { name="CosmoPhotoz"; version="0.1"; sha256="04girid6wvgyrk8ha81mdqjx2mmzifz57l1hzcgrdnzmjmm3vlmp"; depends=[arm COUNT ggplot2 ggthemes gridExtra mvtnorm pcaPP shiny]; };
   Counterfactual = derive2 { name="Counterfactual"; version="1.1"; sha256="0mz0h5zsmca8fww7nq08m9cld2zbaydn8qad5f2g6vxn382842p9"; depends=[doParallel doRNG foreach Hmisc quantreg survival]; };
-  Countr = derive2 { name="Countr"; version="3.4.1"; sha256="1qv773psgmk6ndznl4f2364vadh9qimagm38v5a3xzjnn9dpd23b"; depends=[boot car dplyr flexsurv Formula lattice lmtest MASS Matrix numDeriv optimx pscl RColorBrewer Rcpp RcppArmadillo Rdpack standardize VGAM xtable]; };
-  CountsEPPM = derive2 { name="CountsEPPM"; version="2.1"; sha256="1w1l4kbk8c2prq7f38maz0fc44j9za6cmj0vydmcgscb9s6f3mg7"; depends=[expm Formula numDeriv]; };
+  Countr = derive2 { name="Countr"; version="3.5.2"; sha256="0f45pxxl09avf4k6lzlhykd1y07hvpc3d68bc2y7nrxhpipwl5yl"; depends=[boot car dplyr flexsurv Formula lattice lmtest MASS Matrix numDeriv optimx pscl RColorBrewer Rcpp RcppArmadillo Rdpack standardize VGAM xtable]; };
+  CountsEPPM = derive2 { name="CountsEPPM"; version="3.0"; sha256="0iw7sfrb4yyaagwm1f4q9av5zvzia1mp2ns287ppsw3k248lz0kb"; depends=[expm Formula lmtest numDeriv]; };
   CovSel = derive2 { name="CovSel"; version="1.2.1"; sha256="02fsiykbg96ynqw25vfyrams7fs39xjmfhvb23zjbqb7ql6d0xdk"; depends=[dr MASS np]; };
   CovSelHigh = derive2 { name="CovSelHigh"; version="1.1.1"; sha256="0dvvpkqml2k00gicpgp475z1rjspq3s37ys1mam29k54qlshhny6"; depends=[bartMachine bindata bnlearn doParallel doRNG foreach glmnet MASS Matching randomForest tmle xtable]; };
-  CovTools = derive2 { name="CovTools"; version="0.3.1"; sha256="0ph7rip2lm71qb386diw93n84jaqijz6bqn0i6zgd5gg8j3szx46"; depends=[doParallel expm foreach geigen Matrix mvtnorm pracma Rcpp RcppArmadillo Rdpack shapes]; };
+  CovTools = derive2 { name="CovTools"; version="0.5.0"; sha256="1skkv1i7q9sw71c95606ikwq93nlj0bs42w7j70jv1zbvq4sdmfz"; depends=[doParallel expm foreach geigen Matrix mvtnorm pracma Rcpp RcppArmadillo Rdpack shapes]; };
   CoxBoost = derive2 { name="CoxBoost"; version="1.4"; sha256="1bxkanc8zr4g3abn4ds5wqibv65flvm4y648fs9s0l4vc9vmyshg"; depends=[Matrix prodlim survival]; };
   CoxPhLb = derive2 { name="CoxPhLb"; version="1.0.0"; sha256="1j8dvbjv4h0zdjvwvpswdlsb9pf3gxixh2rhl0m1kxm6f6h5ig0z"; depends=[survival]; };
   CoxPlus = derive2 { name="CoxPlus"; version="1.1.1"; sha256="038wsz206bgc0pnzx403b5ihcwhxpkrpxmwvrvqcxf8333pb62l5"; depends=[Rcpp RcppArmadillo]; };
@@ -723,9 +751,9 @@ in with self; {
   Cprob = derive2 { name="Cprob"; version="1.4.1"; sha256="1m4ys8xpj1jbn3lf8fym935y94dxipiimsf9zxwyw5sy71y7skgq"; depends=[geepack lattice lgtdl prodlim tpr]; };
   CreditMetrics = derive2 { name="CreditMetrics"; version="0.0-2"; sha256="16g3xw8r6axqwqv2f0bbqmwicgyx7nwzff59dz967iqna1wh3spi"; depends=[]; };
   CreditRisk = derive2 { name="CreditRisk"; version="0.1.3"; sha256="09ks8xlsrbp3an1drcwmmd6df4fsfz61z21ma2p62a1pk0bnc86c"; depends=[fOptions]; };
-  CrossClustering = derive2 { name="CrossClustering"; version="3.0"; sha256="0l9cdniqf63x4pfkf6y7c2qh056jwadqw45nz9jk78wamqq8hyqv"; depends=[cluster]; };
+  CrossClustering = derive2 { name="CrossClustering"; version="4.0.3"; sha256="05lbdmblwmmv24h46ixxabbrp7mpajyv7raw1p5h0dmsbfbq9hi5"; depends=[assertive cli cluster crayon dplyr flip glue magrittr mclust purrr]; };
   CrossScreening = derive2 { name="CrossScreening"; version="0.1.1"; sha256="1gig80r8p611ysn35ajx7xdjj5wnkcf1vspcf0i06dmh75xpm3w9"; depends=[plyr tables]; };
-  CrossVA = derive2 { name="CrossVA"; version="0.9.1"; sha256="13skbazs1mh5am70qlwxhvxgfx4gwlzzq6zy3vdzaa3zbykkxlvw"; depends=[lubridate]; };
+  CrossVA = derive2 { name="CrossVA"; version="0.9.3"; sha256="1nagbgcih6ix21js91vfpr4yjkhnirblgdmf04nn7ipv2ins8kw6"; depends=[lubridate stringi]; };
   CrossValidate = derive2 { name="CrossValidate"; version="2.3.2"; sha256="1dlvkv712rz3gw03c04qlk0l0mqjyds3m3pnbszk4848zby5ac6r"; depends=[Modeler oompaBase]; };
   Crossover = derive2 { name="Crossover"; version="0.1-17"; sha256="168j8fl6h7x1pia5f5c18yrf0y1lvznib8clq1mv0imb7cjzkkhi"; depends=[CommonJavaJars crossdes digest ggplot2 JavaGD MASS Matrix multcomp Rcpp RcppArmadillo rJava xtable]; };
   CryptRndTest = derive2 { name="CryptRndTest"; version="1.2.2"; sha256="1cg0agwqp1f7pgxdf9wilwparklyfsv900r47fpihnqw3ycvbdai"; depends=[gmp kSamples LambertW MissMech Rmpfr sfsmisc tseries]; };
@@ -734,8 +762,9 @@ in with self; {
   CuCubes = derive2 { name="CuCubes"; version="0.1.0"; sha256="1cpazar85rp8xfjvy0vxivr61grzvxz7a9mirxvhynln964by6ns"; depends=[]; };
   Cubist = derive2 { name="Cubist"; version="0.2.2"; sha256="1m45dpnr5djsfgqlinng6z0f2wbig2vbidlg19r3zcraqwn1agnd"; depends=[lattice reshape2]; };
   CustomerScoringMetrics = derive2 { name="CustomerScoringMetrics"; version="1.0.0"; sha256="166v0hbxy4xgbfqh7sx6zsrv4pghqpimx5xry3h2qwynnvr4ng1a"; depends=[]; };
-  Cyclops = derive2 { name="Cyclops"; version="1.3.4"; sha256="0iv4rsxy6zngjlbvwkx41np8phv49i6gp0f8yzb5k2azwksx2r3j"; depends=[BH bit ff ffbase MASS Matrix Rcpp RcppEigen RcppParallel survival]; };
-  CytobankAPI = derive2 { name="CytobankAPI"; version="1.1.2"; sha256="0mv6f1v6kclz8ima9f0b3qdb7gc85nn2cnfnzb3vqhm9vvibz8ls"; depends=[curl httr jsonlite]; };
+  CutpointsOEHR = derive2 { name="CutpointsOEHR"; version="0.1.2"; sha256="0r772zb7g10akcfnf2hnyvpvba4px9pgslyns7drmijdsh0ncnvj"; depends=[survival]; };
+  Cyclops = derive2 { name="Cyclops"; version="2.0.1"; sha256="10zx49qhbzgkc18vv4yk1x63ywamxijwir92ls6zbsrdifn412pv"; depends=[BH bit ff ffbase MASS Matrix Rcpp RcppEigen survival]; };
+  CytobankAPI = derive2 { name="CytobankAPI"; version="1.2.0"; sha256="1dg7gfxhamcnzkcdi0kyqs5vkwvmfv1wj5syay5z9j52lh6gp4ib"; depends=[curl httr jsonlite]; };
   CytobankAPIstats = derive2 { name="CytobankAPIstats"; version="2.0"; sha256="0xczcgaxd8dv6fd1j5c8y4il852lq8859d1y16sxs8a3gqn9fbz2"; depends=[CytobankAPI pheatmap shiny shinyFiles xlsx]; };
   CytobankBridgeR = derive2 { name="CytobankBridgeR"; version="1.0.0"; sha256="0m8gxbm3p9gvdszymqx10n5rzb406r4f70a0in798c56mp2rcsl4"; depends=[CytobankAPI]; };
   D2C = derive2 { name="D2C"; version="1.2.1"; sha256="0qhq27978id0plyz9mgdi0r1sr3ixnvqm8w6hp5c2wjd1yhhh12s"; depends=[corpcor foreach gRbase lazy MASS randomForest RBGL Rgraphviz]; };
@@ -748,7 +777,7 @@ in with self; {
   DACF = derive2 { name="DACF"; version="1.0.0"; sha256="0hv7c9lk6ivj4iz953yn11iy5p611q4si4ghn9d5a9i229s5hig8"; depends=[]; };
   DAISIE = derive2 { name="DAISIE"; version="1.4"; sha256="16653wwz20lhf3bpzflpj5d1h7j3cqyfaqk5gn24aifga2jc0wbb"; depends=[DDD deSolve Matrix subplex tensor]; };
   DAKS = derive2 { name="DAKS"; version="2.1-3"; sha256="0vmpwxvksnmyq40faimbgpj0y3zbk519986n38ipwdfzllcg0zs4"; depends=[relations sets]; };
-  DALEX = derive2 { name="DALEX"; version="0.2.3"; sha256="0v2dmc4nnz28qjc378138j0lri2rlbrmwz97xsn9z557y4hrrmmh"; depends=[ALEPlot breakDown factorMerger ggplot2 ggpubr pdp]; };
+  DALEX = derive2 { name="DALEX"; version="0.2.4"; sha256="0zrgp266bmn0b87bf0gvi4yc2ngj4pvhw9qbmvnhqlifrqb55ir6"; depends=[ALEPlot breakDown factorMerger ggplot2 ggpubr pdp]; };
   DALY = derive2 { name="DALY"; version="1.5.0"; sha256="1v7ld01xcn5jiygl1c3xhd5h71ip90lks87fs9gmpnivp8jz5cr5"; depends=[]; };
   DAMOCLES = derive2 { name="DAMOCLES"; version="1.1"; sha256="07z8mynhqnk1zcvm84w09xzkiy2dfxwhmnpi6gaddr3p0waql4gj"; depends=[ape caper deSolve expm geiger matrixStats picante]; };
   DAMisc = derive2 { name="DAMisc"; version="1.4-3"; sha256="1hic53vi7mj4fvggxjl4d3j4zw8wwczh6pldyi8idrhm45hw2nh4"; depends=[boot car effects gdata lattice MASS nnet pscl QRM sm VGAM xtable]; };
@@ -760,8 +789,10 @@ in with self; {
   DBI = derive2 { name="DBI"; version="1.0.0"; sha256="1x8wy2vg2gcgd9bww04qmf0dsn3kp0rfjd8q8j1r2x9zxccg25pz"; depends=[]; };
   DBItest = derive2 { name="DBItest"; version="1.5-2"; sha256="05wizjm2b97fsdha2i391h38xb0zrkhnd036qvdcm0r5l0y56sm8"; depends=[blob DBI desc hms R6 testthat withr]; };
   DBKGrad = derive2 { name="DBKGrad"; version="1.6"; sha256="0207zx0v1x3zhfbs0h1ssxc1b683k111f90k8ybhknb147104knr"; depends=[lattice minpack_lm SDD TSA]; };
+  DBfit = derive2 { name="DBfit"; version="1.0"; sha256="19jdf693ygwfchlqvh0kywid14v0b53p33rr2dvmaqmsc6pfxbbf"; depends=[Rfit]; };
   DCA = derive2 { name="DCA"; version="2.0"; sha256="1acy33vyf814kr0aj6kdvi9f1qzgynwwzv57ll01gd0iqq36374f"; depends=[coin elasticnet GPArotation locfdr modeest mvtnorm PMA]; };
   DCD = derive2 { name="DCD"; version="0.1.0"; sha256="0p6vk8fdvpcvb1bb5fwy3h1v8y3djlvcm5jl5lnx30ngqj6d7rcj"; depends=[data_table doParallel foreach ggplot2 igraph lattice lsa Matrix plyr qlcMatrix Rdpack ROCR WGCNA]; };
+  DCEM = derive2 { name="DCEM"; version="0.0.1"; sha256="0mk9x17c0jhlgcvn1n98mw8cykims0q0qwd067zzbinwhja2d9sv"; depends=[MASS matrixcalc mvtnorm]; };
   DCG = derive2 { name="DCG"; version="0.9.2"; sha256="1s2dz0vnhdhq23fqds1m2jspaz8k5zvd76z1zlbi6nb5ja5n3j3w"; depends=[]; };
   DCGL = derive2 { name="DCGL"; version="2.1.2"; sha256="1dhkdvdglpsr0fzrfrrr6q76jhwxgrcjsiqn56s082y7v366xvs4"; depends=[igraph limma]; };
   DCL = derive2 { name="DCL"; version="0.1.0"; sha256="1ls3x3v0wmddfy7ii7509cglb28l1ix1zaicdc6mhwin0rpp2rx3"; depends=[lattice latticeExtra]; };
@@ -783,26 +814,27 @@ in with self; {
   DEMOVA = derive2 { name="DEMOVA"; version="1.0"; sha256="09dqhhhihphhdnplmhdq4q5zwc0qvqhirdrxa9x6fr43vwa5zfp4"; depends=[leaps]; };
   DES = derive2 { name="DES"; version="1.0.0"; sha256="16p38i8ykwc8gjw6c9dhdwjjpa1b17n9wqhz3rhkbzjh978pky31"; depends=[]; };
   DESnowball = derive2 { name="DESnowball"; version="1.0"; sha256="012kdnxmzap6afc3ffkcvk1mazlkp286av6g9fwz2wcbf5mh9n1m"; depends=[clue cluster combinat MASS]; };
+  DEVis = derive2 { name="DEVis"; version="1.0.0"; sha256="11g7ycvs8z1bnnyl5y6sypgm29pywpp652kg1nzib1x3dyl8cxvl"; depends=[DESeq2 ggdendro ggplot2 ggsci ggthemes gridExtra MASS pheatmap plyr PoiClaClu RColorBrewer reshape2 SummarizedExperiment]; };
   DEoptim = derive2 { name="DEoptim"; version="2.2-4"; sha256="10nlsvms5pf0wmn4z1lj6vnmpwr10q8nhdy5xy9rn7hd1627fm0a"; depends=[]; };
   DEoptimR = derive2 { name="DEoptimR"; version="1.0-8"; sha256="1vz546hyjyhly70z62h5n3mn62b8llhhmim8ffp9y6jnnb0i2sc4"; depends=[]; };
-  DEploid = derive2 { name="DEploid"; version="0.5.0"; sha256="18v1fyxf6pbkanwmncd9jx9l7c9dk3y9dbc89a4cp3qshfn4vbhi"; depends=[htmlwidgets magrittr plotly Rcpp rmarkdown scales]; };
+  DEploid = derive2 { name="DEploid"; version="0.5.2"; sha256="0xjczfql6jl4jxxwvdn3gmwj8bawhj5w6hdamrb0yjdjlhdwb11y"; depends=[htmlwidgets magrittr plotly Rcpp rmarkdown scales]; };
   DFIT = derive2 { name="DFIT"; version="1.0-3"; sha256="1h0wvcplb7j7dqz9hkaw30x92ngxzkdvkwpg0142hrqb201zfrac"; depends=[ggplot2 mvtnorm simex]; };
   DGCA = derive2 { name="DGCA"; version="1.0.1"; sha256="1lqqzrsidkli4bk4jikq5f75jzqyzhv94n882yic5ndxgv26p9ic"; depends=[matrixStats WGCNA]; };
   DGM = derive2 { name="DGM"; version="1.7.2"; sha256="0z0f8bazzsahvjkpfif50db700mqb7arcglwsfxcar9qdy082vsn"; depends=[data_table ggplot2 Rcpp RcppArmadillo reshape2]; };
   DGVM3D = derive2 { name="DGVM3D"; version="1.0.0"; sha256="17cxv8rm7kmxms7v7hzbwbdwa3xl1hwgiljf97ppwswglqyik9iv"; depends=[rgl]; };
   DHARMa = derive2 { name="DHARMa"; version="0.2.0"; sha256="0jh01z2ygz8hi0vh2fxw52ck0wia4hp44qc7v0bks8776gbwj8il"; depends=[ape doParallel foreach gap glmmTMB lme4 lmtest MASS mgcv qrnn sfsmisc]; };
-  DHS_rates = derive2 { name="DHS.rates"; version="0.3.1"; sha256="1lwmd58q2pqynh2dj3alcrri8zwxayq92nn7hwzwlqw70xr5anqv"; depends=[haven matrixStats reshape survey]; };
+  DHS_rates = derive2 { name="DHS.rates"; version="0.4.0"; sha256="12q5qn9k9svabqsya039axx1lnafcq4mlnnb0nyfdjhklnh7k870"; depends=[haven matrixStats reshape survey]; };
   DIFboost = derive2 { name="DIFboost"; version="0.2"; sha256="0wyjk870n18lq0dwhm9ndsh5vv0d8wkrbcky68w454vzrrw1q9h8"; depends=[mboost penalized stabs]; };
   DIFlasso = derive2 { name="DIFlasso"; version="1.0-3"; sha256="195wiy0jjkq6bh2b6wrjmr5l34pzx0i2qqvwp4pzv77sx737ds0v"; depends=[grplasso miscTools penalized]; };
   DIFtree = derive2 { name="DIFtree"; version="2.1.4"; sha256="16cyd634jflaszpfq0ymwlbv57ci1iyffwai641jczn8cny504zl"; depends=[penalized plotrix]; };
   DIME = derive2 { name="DIME"; version="1.2"; sha256="11l6mk6i3kqphrnq4iwk4b0ridbbpg2pr4pyqaqbsb06ng899xw0"; depends=[]; };
   DIRECT = derive2 { name="DIRECT"; version="1.0.1"; sha256="00z4xlc9kxn19lw2b8xq6krsf5v3wfbr1ghl5ah5shr9dnv84lc1"; depends=[]; };
   DISTRIB = derive2 { name="DISTRIB"; version="1.0"; sha256="0whwmmdx2k2vrjjkz4ww9v7z9ad3835819pby91119lyic27w727"; depends=[]; };
+  DIconvex = derive2 { name="DIconvex"; version="1.0.0"; sha256="0bnrq9nmryshir6ll43nz20aaqmmw0zjvfml72cpwbvrma8a3qmz"; depends=[lpSolveAPI]; };
   DJL = derive2 { name="DJL"; version="2.7"; sha256="1p0jd2hn6an3kkc85xkkj36x7iwi43k1yrnmzy0mb5qrbvx07hlj"; depends=[car lpSolveAPI]; };
   DLASSO = derive2 { name="DLASSO"; version="2.0.2"; sha256="0xdygf6h89d9z4kqb46iqfxgdzq9dmkrxf9ypw78l4d8n9xx2gaa"; depends=[MASS]; };
-  DLMtool = derive2 { name="DLMtool"; version="5.1.3"; sha256="0n7sx577fffxbxfbwy19py2hm00rb403n4fvn9j6pcdi433mfx59"; depends=[abind coda devtools ggplot2 ggrepel gridExtra knitr MASS mvtnorm openxlsx r4ss Rcpp RcppArmadillo readxl rmarkdown snowfall]; };
-  DMMF = derive2 { name="DMMF"; version="0.4.0.1"; sha256="0fypj0a0kjzfghazs55mxkig9n3ngjmbi3xmdxkpa35jbn71bfdd"; depends=[raster rgdal sp]; };
-  DMR = derive2 { name="DMR"; version="2.0"; sha256="1kal3bvhwqs00b6p6kl0ja35pcz9v9y569148qfhy94m319fcpzm"; depends=[magic]; };
+  DLMtool = derive2 { name="DLMtool"; version="5.2.3"; sha256="1rkxpfk3pa566crl01z0nmkl44n1gxdp6idfhrc6p1jwccx9fgdv"; depends=[abind boot broom devtools dplyr fmsb ggplot2 ggrepel gridExtra kableExtra knitr MASS mvtnorm openxlsx purrr Rcpp RcppArmadillo readxl rfishbase rmarkdown shiny snowfall tidyr]; };
+  DMMF = derive2 { name="DMMF"; version="0.5.0.2"; sha256="02sk1ykispkjdclsi5xp1m4vmf8mhcqm4q2z73xanvax1kqfb3v3"; depends=[raster rgdal sp]; };
   DMRMark = derive2 { name="DMRMark"; version="1.1.1"; sha256="15wr6j0v9kvbv8y6flkp4svfqy059ziv89nxv91vp0pjmavhpdlz"; depends=[ellipse MCMCpack mvtnorm]; };
   DMRnet = derive2 { name="DMRnet"; version="0.2.0"; sha256="1rbba8w4li240gw5z675d7skm72rh0zxzp4rhsn6ivj72jya7jw4"; depends=[glmnet grpreg]; };
   DMwR = derive2 { name="DMwR"; version="0.4.1"; sha256="1qrykl9zdvgm4c801iix5rxmhk9vbwnrq9cnc58ms5jf34hnmbcf"; depends=[abind class lattice quantmod ROCR rpart xts zoo]; };
@@ -814,6 +846,7 @@ in with self; {
   DNetFinder = derive2 { name="DNetFinder"; version="1.0"; sha256="0q56c2389qaq3wsqpj8s95ncm0xmbl1slr0jmpixb48hhgk0l0ji"; depends=[flare]; };
   DOBAD = derive2 { name="DOBAD"; version="1.0.6"; sha256="0ifrrfm4yp1416z58qgnak042rgj1xvqby2vvzgrv19z6b3250p3"; depends=[lattice Matrix numDeriv]; };
   DODR = derive2 { name="DODR"; version="0.99.2"; sha256="16ia9j8vab8n2i6a17wz8nfvkfgj2gsyhxvwgxvjg2cz99hsbhdj"; depends=[Matrix npsm Rfit]; };
+  DOS = derive2 { name="DOS"; version="1.0.0"; sha256="0vvkwn4wfvspbk74nb6124hdx9158h6yfksib14xqq7rx7c97ad4"; depends=[MASS]; };
   DOT = derive2 { name="DOT"; version="0.1"; sha256="0qh5n57cp9c2n5yn59q4wggz82943pwfanp3kx869aba2x3sj30i"; depends=[V8]; };
   DOvalidation = derive2 { name="DOvalidation"; version="1.1.0"; sha256="1mzws3w7djpxnfqxjcqwgia7p17kb0qlnzj6qcfg2m1vamb1cn2z"; depends=[]; };
   DPBBM = derive2 { name="DPBBM"; version="0.2.5"; sha256="1qypxrcm3sb727lqb09ssjf3hblixqayw3qsyql01imrxwm609i2"; depends=[CEoptim gplots tmvtnorm VGAM]; };
@@ -822,10 +855,11 @@ in with self; {
   DPpackage = derive2 { name="DPpackage"; version="1.1-7.4"; sha256="0lfw55kbjwr1dqkd98p6488p6c0nh5pkfkc9wpds8wsqm38siad6"; depends=[MASS nlme survival]; };
   DPtree = derive2 { name="DPtree"; version="1.0.1"; sha256="0d7zf695lwkx4gv50f08cbi3p3mjjay0qgrbmvybf9m15i4zmyd7"; depends=[MASS MCMCpack plyr Rdpack]; };
   DREGAR = derive2 { name="DREGAR"; version="0.1.3.0"; sha256="15cplshs85r0z659mc7xmj5db7vc95wxs01c34isc22p8z0a287i"; depends=[msgps]; };
-  DRIP = derive2 { name="DRIP"; version="1.3"; sha256="08v6sajgaqa0zvkr9hfzjxsj78acrkj6l9hjxkirbspg3fwqphk7"; depends=[caTools readbitmap]; };
+  DRIP = derive2 { name="DRIP"; version="1.4"; sha256="1rds1161h19waqhiq08hqk5zcn48afccaggmb42xr1zyk31irpi6"; depends=[readbitmap]; };
   DRR = derive2 { name="DRR"; version="0.0.3"; sha256="1yd1fvllfkcrwg9v322n4wkk4q4q84nvy58y4vac9pdr3yf3i4vl"; depends=[CVST kernlab Matrix]; };
   DRaWR = derive2 { name="DRaWR"; version="1.0.1"; sha256="1pfdczwzd236c64yw94bgbk0hbl4dhlgjfjwkljmqgqrzsddvgqh"; depends=[Matrix ROCR]; };
-  DSAIDE = derive2 { name="DSAIDE"; version="0.6.0"; sha256="0jg5shgq1f9k0fcpzkpynd87xfcj8ky09xsz8n8yfvy4fw8d77kl"; depends=[adaptivetau deSolve knitr shiny]; };
+  DSAIDE = derive2 { name="DSAIDE"; version="0.7.0"; sha256="0n99d9ry5svp3fpvkzv3z6mfwlnzd7grf4yrsmn6cpw9m2cmy5yz"; depends=[adaptivetau deSolve dplyr ggplot2 gridExtra knitr rmarkdown shiny tidyr XML]; };
+  DSAIRM = derive2 { name="DSAIRM"; version="0.4.0"; sha256="1jr4nxhb5b5a7snpi6j1kzd1lfvjm88s9zgx20m2sz37jw1lrsmd"; depends=[adaptivetau boot deSolve dplyr ggplot2 gridExtra knitr lhs nloptr rmarkdown shiny tidyr XML]; };
   DSBayes = derive2 { name="DSBayes"; version="1.1"; sha256="0iv4l11dww45qg8x6xcf82f9rcz8bcb9w1mj7c7ha9glv5sfb25v"; depends=[BB]; };
   DSL = derive2 { name="DSL"; version="0.1-6"; sha256="0fmqxladifqqcs4mpb8a1az74fyb4gb8l2y5gzqaad3dbiz82qih"; depends=[]; };
   DSpat = derive2 { name="DSpat"; version="0.1.6"; sha256="1v6dahrp8q7fx0yrwgh6lk3ll2l8lzy146r28vkhz08ab8hiw431"; depends=[mgcv RandomFields rgeos sp spatstat]; };
@@ -841,7 +875,8 @@ in with self; {
   DTR = derive2 { name="DTR"; version="1.7"; sha256="1lzvk9ar6xf3n2vvy8vb9mvrbx3nafzzhvz5g7vf79jd71yz54jd"; depends=[aod ggplot2 survival]; };
   DTRlearn = derive2 { name="DTRlearn"; version="1.3"; sha256="0ngzvjlzn20pff1ihw87nar7riiva4pnfih7hlsr0iszd3v3b1gq"; depends=[ggplot2 glmnet kernlab MASS]; };
   DTRreg = derive2 { name="DTRreg"; version="1.3"; sha256="1144kcqblyrpdqyj9as6y47iq3x99bf76hdw6j43cmgcs11gapc3"; depends=[]; };
-  DTWBI = derive2 { name="DTWBI"; version="1.0"; sha256="001lkjk8dh6mdcysc8mw9c37xp543hjfci0k0py44z7c90b9p2la"; depends=[dtw e1071 entropy lsa rlist]; };
+  DTWBI = derive2 { name="DTWBI"; version="1.1"; sha256="06lp4yc5nhacrgic78l014g2w1ibwgs8dp8zrahk5aripaczl25y"; depends=[dtw e1071 entropy lsa rlist]; };
+  DTWUMI = derive2 { name="DTWUMI"; version="1.0"; sha256="0pybgbfs2yp2ljbs0kra5z70x3llkiwdngp6cadgs3j9rar4vq4q"; depends=[dtw DTWBI e1071 entropy lsa rlist]; };
   DVHmetrics = derive2 { name="DVHmetrics"; version="0.3.7"; sha256="1syxw49pzh36nfq0zfr83cwpac86fnj0b7nlqiin4jb00h8vrf6i"; depends=[ggplot2 KernSmooth markdown reshape2 shiny]; };
   DWDLargeR = derive2 { name="DWDLargeR"; version="0.1-0"; sha256="1bxdvgj38xv2xj98njpyhy12b54nccwnc3v92kkpd3i7nwbw48dy"; depends=[Matrix SparseM]; };
   DWLasso = derive2 { name="DWLasso"; version="1.1"; sha256="1i8j8wjfvg69ldr8ahz1zv3m2wgxd701iph94ad22zs9qwqfg16z"; depends=[glmnet hglasso Matrix]; };
@@ -858,14 +893,18 @@ in with self; {
   DataClean = derive2 { name="DataClean"; version="1.0"; sha256="0wkafjyp6c2mx7g1bpz2pbxyl5nm2wba2hly8miizv0fdc762za5"; depends=[xlsx XML]; };
   DataCombine = derive2 { name="DataCombine"; version="0.2.21"; sha256="0iwb4726bk0cjhay694dp43b1553yyk9lpxbncs85kz229b26arm"; depends=[data_table dplyr]; };
   DataEntry = derive2 { name="DataEntry"; version="0.9-3"; sha256="0gfsg7wfwy88x7y1dwpgwi6fkizjnhrzj0a5ij70y4a4sjmyiy55"; depends=[digest gWidgets2 gWidgets2RGtk2 RGtk2]; };
-  DataExplorer = derive2 { name="DataExplorer"; version="0.6.0"; sha256="1vwihlslrcwca3q15hxpa9kvajv0clz7scqycaxhxk9ngdwcqh10"; depends=[data_table ggplot2 gridExtra networkD3 reshape2 rmarkdown scales]; };
+  DataExplorer = derive2 { name="DataExplorer"; version="0.7.0"; sha256="0mhynbsiamcxd208pr75n23ccd5sajlry2c3rl0yxyv7wn6axkyj"; depends=[data_table ggplot2 gridExtra networkD3 reshape2 rmarkdown scales]; };
   DataGraph = derive2 { name="DataGraph"; version="1.0.1"; sha256="0rvysvkcs926jzhp7iz9d5np0pa31y825ajn9yyzhbdfk5dg2wry"; depends=[Rcpp]; };
   DataLoader = derive2 { name="DataLoader"; version="1.3"; sha256="18mih6mb95v5xjvmqwby2mma74fcxwyqdm5w8j3bhi4iwgfn6d7v"; depends=[plyr rChoiceDialogs readxl xlsx]; };
-  DataVisualizations = derive2 { name="DataVisualizations"; version="1.1.1"; sha256="1y38q1rw92qzsl22663v730i9c1mlyyw9pb167f8f81snb0x9fda"; depends=[AdaptGauss ggplot2 magrittr Rcpp RcppArmadillo sp]; };
-  DatabaseConnector = derive2 { name="DatabaseConnector"; version="2.1.3"; sha256="00dd9m7qf97ymrjjklg4a0j93wcn6mrmvg7spywm524nickcd4f6"; depends=[bit DatabaseConnectorJars DBI ff ffbase rJava SqlRender urltools]; };
+  DataPackageR = derive2 { name="DataPackageR"; version="0.15.4"; sha256="1q9n0684hi1y87zq25274s2kgdk7slsb2nchww36yy45vlzi3jsn"; depends=[assertthat crayon desc devtools digest futile_logger knitr purrr rmarkdown roxygen2 rprojroot stringr usethis yaml]; };
+  DataVisualizations = derive2 { name="DataVisualizations"; version="1.1.4"; sha256="0q6pz9j6js5q8mma6d1vl4wngk5zzmfq0hssrh2pk2brnm6958mj"; depends=[AdaptGauss ggplot2 Rcpp RcppArmadillo sp]; };
+  DatabaseConnector = derive2 { name="DatabaseConnector"; version="2.2.0"; sha256="0y6si8sci70fskkznx7xg5wk488hcpdfm4193b9i5nbsq6mnn8a6"; depends=[bit DatabaseConnectorJars DBI ff ffbase rJava SqlRender urltools]; };
   DatabaseConnectorJars = derive2 { name="DatabaseConnectorJars"; version="1.0.0"; sha256="1m739q9x5w2xcwx19qm633z6xfijqdgcdvfjj6c5jhn66hc401nq"; depends=[rJava]; };
   DatabionicSwarm = derive2 { name="DatabionicSwarm"; version="1.1.0"; sha256="19in7n2fs5m965wf37mplsafiqrmgv1lcyhf7rlk4wvq4y2gvic6"; depends=[deldir GeneralizedUmatrix Rcpp RcppArmadillo]; };
   Davies = derive2 { name="Davies"; version="1.1-9"; sha256="19n2szki2dc8z01zh5a7bq4scgisnpd2qqbiimgrswjrykgh2fpm"; depends=[]; };
+  DeLorean = derive2 { name="DeLorean"; version="1.5.0"; sha256="1ry6j4mvxms9hddi9c56p9yhjh66fzss41wqkf6xq398h1wbn4q1"; depends=[BH broom coda dplyr fastICA functional ggplot2 kernlab lattice MASS memoise Rcpp RcppEigen reshape2 rstan rstantools seriation StanHeaders stringr]; };
+  DecisionAnalysis = derive2 { name="DecisionAnalysis"; version="0.1.0"; sha256="1pxsvwl1in822ml7spb4flln2l7kzavq0jhxxsgxcrljypvrva61"; depends=[Cairo data_tree dplyr ggplot2 gridExtra tidyr viridisLite]; };
+  DeclareDesign = derive2 { name="DeclareDesign"; version="0.10.0"; sha256="1vp9sp7sqpzdglaqiniz39wgz3ib2h45kqrxkfgdrnsiz14ksmjw"; depends=[estimatr fabricatr randomizr rlang]; };
   DecorateR = derive2 { name="DecorateR"; version="0.1.1"; sha256="1dvyadlksqv8ns043yh91f6kw162k6r0zwn13j1g6pvismw04br9"; depends=[rJava RWeka RWekajars]; };
   Deducer = derive2 { name="Deducer"; version="0.7-9"; sha256="14kakyf28i654pndlswjzp6h3h7szpznrg6xznqg150mmn0bs3s6"; depends=[car e1071 effects foreign ggplot2 JGR MASS multcomp plyr rJava scales]; };
   DeducerExtras = derive2 { name="DeducerExtras"; version="1.7"; sha256="0sngsq31469a74y7nhskl82fwy2i0ga68m9g6b1xyhxz1a8kgvlg"; depends=[Deducer irr rJava]; };
@@ -876,31 +915,33 @@ in with self; {
   DeducerText = derive2 { name="DeducerText"; version="0.1-2"; sha256="0if2p9j74wa5rva4iv0i8iax22grl9j7lqcqzqlywjgqwnlzxa05"; depends=[Deducer RColorBrewer SnowballC tm wordcloud]; };
   Delaporte = derive2 { name="Delaporte"; version="6.2.0"; sha256="0lhi4gfps00c9psr8kk7zzh7ky4y7xi2va303darxq9j6v509qck"; depends=[]; };
   DelayedEffect_Design = derive2 { name="DelayedEffect.Design"; version="0.0.4"; sha256="0n1dw9bqisfarg7him49mzqn60gcfr660d5x9k6b37r12dnmy48v"; depends=[msm survival]; };
-  Delta = derive2 { name="Delta"; version="0.1.1.11"; sha256="1fi5sgyrf86xmfxhglqxcc0hq5mpc8ar3nk2s4wx3rw4if3sdxdz"; depends=[]; };
+  Delta = derive2 { name="Delta"; version="0.2.0.2"; sha256="00yl7rildggcv5zlis6idzjkfvz6x99c29vrra1w8l11klxnjpdy"; depends=[]; };
   Demerelate = derive2 { name="Demerelate"; version="0.9-3"; sha256="1bsf09di6nh0hznqx829jnbn3092rya03hnc82cns6rm8d3bn0a9"; depends=[fts mlogit sfsmisc vegan]; };
+  DemoDecomp = derive2 { name="DemoDecomp"; version="1.0.1"; sha256="0m24ld8s3ph8qcbkqma5y5k5nv0d0vgb7wz8q20gxnfbj2kbcvjv"; depends=[Rdpack]; };
   DendSer = derive2 { name="DendSer"; version="1.0.1"; sha256="0id6pqx54zjg5bcc7qbxiigx3wyic771xn9n0hbm7yhybz6p3gz9"; depends=[gclus seriation]; };
-  DendroSync = derive2 { name="DendroSync"; version="0.1.1"; sha256="0lizdkd5izqn3n4iqcj6gyc2p2c3ajljfhv5js4wfl2fljs46wkg"; depends=[ggplot2 gridExtra nlme]; };
+  DendroSync = derive2 { name="DendroSync"; version="0.1.2"; sha256="007lmdwnk6qll13965667fn2a0lfnc85msp0wrgm25gi011z8x37"; depends=[ggplot2 gridExtra nlme]; };
   DengueRT = derive2 { name="DengueRT"; version="1.0.1"; sha256="11qfg4l6y3j8qh4dcsz13xjjj1n0q71c9a3c180nm5lgqv0nwb81"; depends=[drc ggplot2 nlme]; };
-  DensParcorr = derive2 { name="DensParcorr"; version="1.0"; sha256="15w0ifcq1js0wyjscfhlbga77sgzqpmz7zmwa77y92iwna8q66ad"; depends=[clime gplots]; };
+  DensParcorr = derive2 { name="DensParcorr"; version="1.1"; sha256="1ifkg7cpimf27yhr60rks77r16kmhwa5h10wv7b64sbfncnyzfmj"; depends=[clime gplots]; };
   Density_T_HoldOut = derive2 { name="Density.T.HoldOut"; version="2.00"; sha256="0kh5nns1kqyiqqfsgvxhx774i2mf4gcim8fp5jjyq577x4679r31"; depends=[histogram]; };
-  DepthProc = derive2 { name="DepthProc"; version="2.0.3"; sha256="0zzbk0vbl2qfwr5j203xpzahf6kl0ya4l7xfjdc6diadfnr0w94y"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm zoo]; };
+  DepthProc = derive2 { name="DepthProc"; version="2.0.4"; sha256="1dh159pvvn2hbjydb9ys8ndblpzpyg72g2hfiqrdi3bkz865xvg5"; depends=[colorspace geometry ggplot2 lattice MASS np Rcpp RcppArmadillo rrcov sm zoo]; };
   Deriv = derive2 { name="Deriv"; version="3.8.5"; sha256="0815ws2zmla3ici1n8amkc8fz8lwpbg5z68m8j3nhc79m2ikvm20"; depends=[]; };
-  DescTools = derive2 { name="DescTools"; version="0.99.24"; sha256="1ns0vqpnfj995dq1l6pmah2wi6l8zacndha6brhy97hyn84mc83k"; depends=[BH boot expm foreign manipulate MASS mvtnorm Rcpp]; };
+  DescTools = derive2 { name="DescTools"; version="0.99.25"; sha256="0bk2za3zx9xfxaiz7ax2n9592v4nvb7lwxw68g4vxvxlyrmi178c"; depends=[BH boot expm foreign manipulate MASS mvtnorm Rcpp]; };
   DescToolsAddIns = derive2 { name="DescToolsAddIns"; version="1.0"; sha256="1qyxbnmr2dycyfivdyvdqcbpk993q9glrixgp64pflx3sqz91yyk"; depends=[DescTools rstudioapi]; };
-  DescribeDisplay = derive2 { name="DescribeDisplay"; version="0.2.5"; sha256="02b6yjgklsdjh3rikc8f5wfx08ymbygr3fyq1c134xhffhykrlgp"; depends=[GGally ggplot2 plyr reshape2 scales]; };
+  DescribeDisplay = derive2 { name="DescribeDisplay"; version="0.2.7"; sha256="0241mbz0y3ala7fsb4fwjd0xigsk0wq77hfrjyvnnp97rfjfzmcv"; depends=[GGally ggplot2 plyr reshape2 scales]; };
   DescriptiveStats_OBeu = derive2 { name="DescriptiveStats.OBeu"; version="1.3.0"; sha256="1cgxnsxivsqchzqywv470q9qwxczmcvwhrr51m70mcbzmib4mxw3"; depends=[curl dplyr jsonlite magrittr RCurl reshape]; };
+  DesignLibrary = derive2 { name="DesignLibrary"; version="0.1.1"; sha256="1ykzriq1h2i0fmbdsbscy093j4bbsxdvbx94yqcrxz9zflzzmk36"; depends=[DeclareDesign estimatr fabricatr randomizr rlang]; };
   DetMCD = derive2 { name="DetMCD"; version="0.0.5"; sha256="034wb5hwpikli6h2rwiqr19qvzxrr4qwi4q436y7c5a5wgkfzgl5"; depends=[pcaPP Rcpp RcppEigen robustbase]; };
   DetR = derive2 { name="DetR"; version="0.0.5"; sha256="1dd4nzkgj5pl9397aa0z3q5fpl27xbdf7q0pqbs821dyynylxzn9"; depends=[MASS pcaPP Rcpp RcppEigen robustbase]; };
   DetSel = derive2 { name="DetSel"; version="1.0.2"; sha256="0igkccclmjwzk7sl414zlhiykym0qwaz5p76wf4i7yrpjgk7mhl9"; depends=[ash]; };
   Devore7 = derive2 { name="Devore7"; version="0.7.6"; sha256="1m18p8h9vv4v0aq2fkjyj39vzb8a09azbbczhfiv4y88w540i8nw"; depends=[lattice MASS]; };
   Dforest = derive2 { name="Dforest"; version="0.4.2"; sha256="19jyph2zqfyq9vv22kb6fqy89l0vcviv19zgk10hbd7q850f6ryn"; depends=[ggplot2 rpart]; };
-  DiPhiSeq = derive2 { name="DiPhiSeq"; version="0.1.0"; sha256="02kk0qqi9skb2pszfsgasa9fj7iz1brwxgwcw1dq9gf5hxr9zra4"; depends=[]; };
+  DiPhiSeq = derive2 { name="DiPhiSeq"; version="0.2.0"; sha256="11l2inf99vxz9k292307j8c2b25kc1066svy3vxrfl72rrm4fqa7"; depends=[]; };
   DiagrammeR = derive2 { name="DiagrammeR"; version="1.0.0"; sha256="0zik8j50yfxgzdv2cf6q80kw8nb5y55l9sbrp60qc08r3fp6s61b"; depends=[downloader dplyr glue htmltools htmlwidgets igraph influenceR magrittr purrr RColorBrewer readr rgexf rlang rstudioapi scales stringr tibble tidyr viridis visNetwork]; };
   DiagrammeRsvg = derive2 { name="DiagrammeRsvg"; version="0.1"; sha256="0j2cm1mx3zrb2k3pcrb96z2z3kws61gyyjsjjv5rqcb5lzdgi65k"; depends=[V8]; };
   DiallelAnalysisR = derive2 { name="DiallelAnalysisR"; version="0.1.1"; sha256="1diwzckn0f2dv0vj2mdzy7k3md6j472xzj82ip23adwr27vlfsi3"; depends=[ggplot2]; };
   DiceDesign = derive2 { name="DiceDesign"; version="1.7"; sha256="05bmscy275077kmbmg75npnmw30kd5x5wmlizcfq771zixby3f7h"; depends=[]; };
   DiceEval = derive2 { name="DiceEval"; version="1.4"; sha256="06p3v161ig714k7z59iji64xhxw1a68kqhnlwhwpjpyrx7kn137b"; depends=[DiceKriging]; };
-  DiceKriging = derive2 { name="DiceKriging"; version="1.5.5"; sha256="035kbk633v4kfb44wiyb556sayl73c24fc1w09r3f33shqgidzjm"; depends=[]; };
+  DiceKriging = derive2 { name="DiceKriging"; version="1.5.6"; sha256="14jfwvj8vhrngcpkqdzr6klhnqwgr1g5wm5rqz8q6w7ip4nnsii5"; depends=[]; };
   DiceOptim = derive2 { name="DiceOptim"; version="2.0"; sha256="1hx4379yb6d36c494qc237vld4jnfxq18m994p5ii9ks6s7amifn"; depends=[DiceDesign DiceKriging mnormt pbivnorm randtoolbox rgenoud]; };
   DiceView = derive2 { name="DiceView"; version="1.3-2"; sha256="0ny9gbaycrq3lr4gqil1yyhkkyxmabl8w6cmkkzlx3yaara0idkf"; depends=[DiceEval DiceKriging rgl]; };
   DidacticBoost = derive2 { name="DidacticBoost"; version="0.1.1"; sha256="0z1h61n6nfjvb64fgkzi1sq7ag747crhh593hxkx0cpza29778rz"; depends=[rpart]; };
@@ -914,10 +955,11 @@ in with self; {
   DirectEffects = derive2 { name="DirectEffects"; version="0.1"; sha256="0c9inxn624c5rxa86d8r8jhsrm42rcsm4xxrwg7h3lvpairiyil2"; depends=[Formula]; };
   DirectStandardisation = derive2 { name="DirectStandardisation"; version="1.2"; sha256="060nscnn7wamnbb45a55wr6rirlbpwwjz0kxiw3aiqkm16ilzfbs"; depends=[]; };
   DirectedClustering = derive2 { name="DirectedClustering"; version="0.1.1"; sha256="1shdqz0c5bbgknvfqr3ais26cb5mpywnah3d3584w97sy8v7gxm2"; depends=[igraph]; };
-  Directional = derive2 { name="Directional"; version="3.2"; sha256="0wjlkaq6wwpfllyk9qjmpap3vy0yxgbd12yz4nmmf51fnpqv75a6"; depends=[doParallel foreach MASS RcppZiggurat Rfast]; };
+  Directional = derive2 { name="Directional"; version="3.3"; sha256="17cf2nrx9kxyrmsg443bnh2dfw0351ab4g0xl5bm7ldbiffqm7sp"; depends=[doParallel foreach MASS RcppZiggurat Rfast]; };
   DirichletReg = derive2 { name="DirichletReg"; version="0.6-3"; sha256="0qvnsbyn3livp5jrnxskf5sf7f2svy5mqkmnhzncb9bwf3kxpyla"; depends=[Formula maxLik rgl]; };
   DisHet = derive2 { name="DisHet"; version="1.0.0"; sha256="056jcs1qpiyadnmlzd0cj4kp0qzkichxi0pdnxypyq1fsqnpvan3"; depends=[gtools matrixStats]; };
-  DisImpact = derive2 { name="DisImpact"; version="0.0.2"; sha256="0rn92vdxll4r20q0ybqrd3sdpa1bsg9zmbb98zmllfvmh2fgj6a1"; depends=[dplyr magrittr rlang]; };
+  DisImpact = derive2 { name="DisImpact"; version="0.0.3"; sha256="1xmbwhbhb2jyzar8am77zma7l5siyhzna6l69y2068lqrk7l5w32"; depends=[dplyr magrittr rlang]; };
+  DiscreteFDR = derive2 { name="DiscreteFDR"; version="1.1"; sha256="0flirs7m2a8igkf0qvr99i882k886iry8wjzsb2l4zp0f1piwjyy"; depends=[]; };
   DiscreteInverseWeibull = derive2 { name="DiscreteInverseWeibull"; version="1.0.2"; sha256="0vjsvl4m4zccfgizv7mzidbbpzqcm101x448vllcdcrn2xlnkmnq"; depends=[Rsolnp]; };
   DiscreteLaplace = derive2 { name="DiscreteLaplace"; version="1.1.1"; sha256="17w4vjvsm7jacvwckjczyah3hglq044r3m6vqdcrg8haz884rav2"; depends=[]; };
   DiscreteWeibull = derive2 { name="DiscreteWeibull"; version="1.1"; sha256="1rg3ax6jryagf5d3h8m44x9wyhr2qff3srfa9zrk6i64p1ahk9lr"; depends=[Rsolnp]; };
@@ -930,7 +972,7 @@ in with self; {
   DiversityOccupancy = derive2 { name="DiversityOccupancy"; version="1.0.6"; sha256="16x3fpchgd12mccvr1k11vjka97sy5vjvjcyd5y3pskgnpycc2sv"; depends=[dplyr ggplot2 glmulti MuMIn qpcR raster unmarked vegan]; };
   DnE = derive2 { name="DnE"; version="2.1.0"; sha256="02cbfb3m9xf24wkgqc06k3k0rx7qlqh4ma43khg6fpvif6yyahrn"; depends=[]; };
   DoE_MIParray = derive2 { name="DoE.MIParray"; version="0.11"; sha256="0plwvji2rrxmjnf61mj1ijglc9z62n26ijqsf65s35c19qv2g0y1"; depends=[DoE_base]; };
-  DoE_base = derive2 { name="DoE.base"; version="1.0"; sha256="01h2slkrc4vzmz54vilv6qkgfz0f9jhq3bb684rl7cx55smhzr68"; depends=[combinat conf_design lattice MASS numbers vcd]; };
+  DoE_base = derive2 { name="DoE.base"; version="1.1-1"; sha256="1py9ml1gdibjqklqw2gzrppkgcpp2418sxdbg7ciw9vkwivwbrsn"; depends=[combinat conf_design lattice MASS numbers partitions vcd]; };
   DoE_wrapper = derive2 { name="DoE.wrapper"; version="0.9"; sha256="0l4dxb0f4ql5k3x1avfzs1w54qwjxfp8rl9h9vg6p1zhbkz4qz06"; depends=[AlgDesign DiceDesign DoE_base FrF2 lhs rsm]; };
   DoEstRare = derive2 { name="DoEstRare"; version="0.2"; sha256="0y9ymw7114jk1rwiasq400bpgvkxv6rpc954c7v9mgxd3c2nfza7"; depends=[]; };
   DoTC = derive2 { name="DoTC"; version="0.2"; sha256="1hjjkmxrbiysy3xl6n4q7kxcygdq68jcsgki1p937zj9a17sa62j"; depends=[ggplot2 plyr]; };
@@ -947,7 +989,7 @@ in with self; {
   DrillR = derive2 { name="DrillR"; version="0.1"; sha256="0n7pim5kk0wfdjcc67v4vvdb7wyhn5bcgi2a12nbyfyydss7pk1g"; depends=[httr]; };
   DrugClust = derive2 { name="DrugClust"; version="0.2"; sha256="0acvjqwzkbjmy101m501l7fkfxzkp6zflwvn56li5307xv9ggnfg"; depends=[cclust cluster e1071 MESS ROCR]; };
   DstarM = derive2 { name="DstarM"; version="0.3.0"; sha256="16vcv21dgnymhsy9j5x5pblnipf4hdyscajx6pr8kl6i95hs3hmj"; depends=[DEoptim ggplot2 Rcpp RcppArmadillo rtdists RWiener]; };
-  DtD = derive2 { name="DtD"; version="0.1.0"; sha256="1alkgd2rpjrg1sl1l22qsr5b5d3i4scvfxijhffxb0897yvg71ri"; depends=[checkmate Rcpp RcppArmadillo]; };
+  DtD = derive2 { name="DtD"; version="0.2.0"; sha256="0s6prl8rmpjmsv94ww3pvks11nw716gf7250jyynharvqd9q9aps"; depends=[checkmate Rcpp RcppArmadillo]; };
   DunnettTests = derive2 { name="DunnettTests"; version="2.0"; sha256="1sf0bdxays10n8jh2qy85fv7p593x58d4pas9dwlvvah0bddhggg"; depends=[mvtnorm]; };
   DySeq = derive2 { name="DySeq"; version="0.22"; sha256="1sx6mg0bcqb5ff6x305k43zx3fwd16rvxc7xb3ai5h3w7fs9zz7y"; depends=[boot MASS TraMineR]; };
   Dykstra = derive2 { name="Dykstra"; version="1.0-0"; sha256="1rc1409ky0ysqr3ccq28yhbs94m6d0z2dfa66k4c7irxjvbagwz6"; depends=[]; };
@@ -955,7 +997,7 @@ in with self; {
   DynNom = derive2 { name="DynNom"; version="4.1.1"; sha256="1c4hykp8fwr6h5y09m4qs23bmbaj6im2c833mv2ymlhy5bwhmnfi"; depends=[BBmisc compare ggplot2 plotly rms shiny stargazer survival]; };
   DynTxRegime = derive2 { name="DynTxRegime"; version="3.2"; sha256="0a6s28vc7kf6r7qmy9xjmxm39fl0ijnbl01d8rzr4w9sbnr3n85l"; depends=[dfoptim kernlab modelObj rgenoud]; };
   DynamicDistribution = derive2 { name="DynamicDistribution"; version="1.1"; sha256="1s78hpj2pxjs4vixin1i816qjbn3wk7b8rd2zdjp4d4rbxifcqf5"; depends=[]; };
-  DynamicGP = derive2 { name="DynamicGP"; version="1.0-2"; sha256="1mgipnkf8mlxcr9b6naiy5nq90war1gdp2cm54681b4cx0fv62p2"; depends=[laGP lhs]; };
+  DynamicGP = derive2 { name="DynamicGP"; version="1.1-1"; sha256="14xmsxvzl4jri6727qj7mzs1smlqm1hgq03v5r624dqkkmfbdxkv"; depends=[lhs]; };
   EAinference = derive2 { name="EAinference"; version="0.2.3"; sha256="1kzcfya3z6rf1vqjn72yjymdhrn4dzgmwifh3w6k22cy5jxffzn4"; depends=[hdi limSolve MASS msm mvtnorm Rcpp RcppArmadillo]; };
   EBASS = derive2 { name="EBASS"; version="0.1"; sha256="14hxzj06wrc4ihflr7dqk28fsjwbcizr0jy54vhv0mk1y1gd4201"; depends=[]; };
   EBEN = derive2 { name="EBEN"; version="4.6"; sha256="0gcf5b2viiq69vs8bd8nhk65g9sbzgg212w7zpnz4y6cv9jkk5zz"; depends=[]; };
@@ -963,6 +1005,7 @@ in with self; {
   EBglmnet = derive2 { name="EBglmnet"; version="4.1"; sha256="0wlscmimj74alcr8k5h1g3alvlpss4g2ah7zkpd42akam3zb4s5z"; depends=[]; };
   EBrank = derive2 { name="EBrank"; version="1.0.0"; sha256="1qzhrr3n2zv31mjp224b35324nr9nigzazyfv11j4zhwl1ipf632"; depends=[]; };
   ECFsup = derive2 { name="ECFsup"; version="0.1-2"; sha256="0fpcab0gjgsc3sx0plpx068rw3a7kfzs2nyrr477a5m0rcbqf1kh"; depends=[foreach Rcpp RcppArmadillo]; };
+  ECLRMC = derive2 { name="ECLRMC"; version="1.0"; sha256="01z2hmbpb754s2rsvx3i5wf7kkkr2mvs2g89ih2bqrif7w5rmgyg"; depends=[softImpute]; };
   ECOSolveR = derive2 { name="ECOSolveR"; version="0.4"; sha256="14dpja9wr1qqip388c8b6xvdvdpwwmyq5piv182ir0rwrla5nzdb"; depends=[Matrix]; };
   ECctmc = derive2 { name="ECctmc"; version="0.2.5"; sha256="0prryvc17bm1xrhzlqk2w9nj181bg99j1dph3d36h0n1vfq1d7if"; depends=[Rcpp RcppArmadillo]; };
   ECharts2Shiny = derive2 { name="ECharts2Shiny"; version="0.2.13"; sha256="0dq8ja4ydxnc7qx35qhh9ryqgi7ambwz6ka2821mmq3p994crswn"; depends=[jsonlite shiny]; };
@@ -973,20 +1016,22 @@ in with self; {
   EDMeasure = derive2 { name="EDMeasure"; version="1.2.0"; sha256="1gyv86vip0a3939dbbwz29xkqzncw24r68fzykdjnv3b995510iv"; depends=[dHSIC energy rBayesianOptimization]; };
   EDR = derive2 { name="EDR"; version="0.6-6"; sha256="10m92p3fy5z2kca4h9awwmvs4pqri92habkvgjvjl5ira09yvyi7"; depends=[sm]; };
   EEM = derive2 { name="EEM"; version="1.1.1"; sha256="0w20kakgcpyhfi7fcrss4w67pbaj87hi2scy7g05q3sg2ygac7gj"; depends=[colorRamps ggplot2 R_utils reshape2 sp]; };
-  EFAutilities = derive2 { name="EFAutilities"; version="1.2.2"; sha256="1gknnfyhv16a16wgach0ps9wd08d75bach4p80vjq6ld9fjvpw2h"; depends=[GPArotation mvtnorm plyr]; };
+  EFAutilities = derive2 { name="EFAutilities"; version="1.2.3"; sha256="1r2ma22r1bs5yn0k4c4p2ks571vp6bzmr4wsd25w535k5qfjx2np"; depends=[GPArotation mvtnorm plyr]; };
   EFDR = derive2 { name="EFDR"; version="0.1.1"; sha256="0jgznwrd40g9xmvhrd7b441g79x41ppfdn6vbsbzc0k5ym1wzb1p"; depends=[doParallel dplyr foreach gstat Matrix sp tidyr waveslim]; };
   EFS = derive2 { name="EFS"; version="1.0.3"; sha256="1q8cf8dnxpv5s3lr9145y0wjhak4rz18dzah4xfs5qr4c8nlpl54"; depends=[party pROC randomForest ROCR]; };
-  EGRET = derive2 { name="EGRET"; version="2.6.0"; sha256="0alr47pmq1ml64j500vkqwmvrqa3i1ccbf3w7w44fbbjy1vfp04a"; depends=[dataRetrieval fields lubridate survival truncnorm]; };
-  EGRETci = derive2 { name="EGRETci"; version="1.0.2"; sha256="15jf4bgxvqqz64y4i6ncfj0ymgwmhahxlhdnfps4zj7gwxgcbvqh"; depends=[binom EGRET lubridate]; };
+  EGRET = derive2 { name="EGRET"; version="3.0.0"; sha256="1zl93cf8wmbxc095bsw0ngsfalgrydgn3mvnsnpzg3bp18idvwsw"; depends=[dataRetrieval fields foreach survival truncnorm]; };
+  EGRETci = derive2 { name="EGRETci"; version="2.0.0"; sha256="1jndrkg3wn46d2fxb6l4f77v65vvq0ir91zr3iyh01lhlksnf33j"; depends=[binom EGRET]; };
   EHR = derive2 { name="EHR"; version="0.1-3"; sha256="1y12j0sjr1zp3bzha1p31f903js674l6ifjccw0y9718sry8dbv2"; depends=[logistf]; };
   EIAdata = derive2 { name="EIAdata"; version="0.0.3"; sha256="12jgw3vi2fminwa4lszczdr4j4svn2k024462sgj1sn07a4a4z2s"; depends=[plyr XML xts zoo]; };
   EILA = derive2 { name="EILA"; version="0.1-2"; sha256="0wxl9k4fa0f7jadw3lvn97iwy7n2d02m8wvm9slnhr2n8r8sx3hb"; depends=[class quantreg]; };
   EKMCMC = derive2 { name="EKMCMC"; version="0.1.0"; sha256="0sfj6w8780fik0ar9bg8zrxkj10wqagvwrngd58g50fc0z4lhr53"; depends=[numDeriv]; };
   EL = derive2 { name="EL"; version="1.0"; sha256="13r7vjy2608h8jph8kwy69rnkg98b2v69117nrl728r3ayc46a18"; depends=[]; };
-  EL2Surv = derive2 { name="EL2Surv"; version="1.0"; sha256="1vrm0w9rmy4vfkpzq804p216cxw4vvp91g77k4vvzv4z87gkqfhq"; depends=[survival]; };
+  EL2Surv = derive2 { name="EL2Surv"; version="1.1"; sha256="0bn2481rf61qnia468y7k95hhazjaghrv919a2y9ar5wcz5nq2kk"; depends=[survival]; };
   ELMR = derive2 { name="ELMR"; version="1.0"; sha256="0pd3drv485xbdyfwm28kjpd0nd0zv1khfwzki1gh5p1gz9ndwr2x"; depends=[]; };
+  ELMSO = derive2 { name="ELMSO"; version="1.0.0"; sha256="0bsqx2630m817hi5p0rz8cfp5gyzqxyrysba5nm189h556k4c3a4"; depends=[]; };
   ELT = derive2 { name="ELT"; version="1.6"; sha256="0vbrf912m6f80sqyyrp0z4jhq38fnmcy6hgwy0qh8wgk3p1aqm7c"; depends=[lattice latticeExtra locfit xlsx]; };
-  ELYP = derive2 { name="ELYP"; version="0.7-3"; sha256="1d91r59m85k91kcjjlvhvbsa9855fyd702bwj7drvk36ssfr8qb9"; depends=[survival]; };
+  ELYP = derive2 { name="ELYP"; version="0.7-5"; sha256="1j2vwcs443x3pf4zypyvbkn8fb5if9b9hf1s821jjjpgach573sc"; depends=[survival]; };
+  EM_Fuzzy = derive2 { name="EM.Fuzzy"; version="1.0"; sha256="0sz4zkjn6rdzdqmkq6j24bd4sj91y5lan31bldxdfskgz0jpzhbr"; depends=[DISTRIB FuzzyNumbers]; };
   EMA = derive2 { name="EMA"; version="1.4.5"; sha256="16iq5a3yrilchqmkyb4g5bmmgpw6psm88n52gmlax75xbiwk8261"; depends=[affy AnnotationDbi Biobase biomaRt cluster FactoMineR gcrma GSA heatmap_plus MASS multtest siggenes survival xtable]; };
   EMAtools = derive2 { name="EMAtools"; version="0.1.3"; sha256="1kzna29kd6s2hgli5azrfz85mbyl1x6knvhhhny2scf7a1fcijsy"; depends=[DataCombine ggplot2 lmerTest sjstats]; };
   EMC = derive2 { name="EMC"; version="1.3"; sha256="0sdpxf229z3j67mr9s7z4adzvvphgvynna09xkkpdj21mpml23p6"; depends=[MASS mvtnorm]; };
@@ -996,23 +1041,25 @@ in with self; {
   EMMAgeo = derive2 { name="EMMAgeo"; version="0.9.4"; sha256="1i36s8mzp04alff6lqkc798xjzgn61wdpl5i0awjdvg26ka8v7lj"; depends=[GPArotation limSolve shape shiny]; };
   EMMIXcskew = derive2 { name="EMMIXcskew"; version="0.9-5"; sha256="1ys5kvns6jlw2lk9m6xcy71wx1d581cmphiaxnp3hsqimc8wz7hq"; depends=[MASS mnormt rgl]; };
   EMMIXgene = derive2 { name="EMMIXgene"; version="0.1.0"; sha256="1jadasvngxczyyc7gxpcw3jxhxai3p88l8lmj1jmdns5vdi2n4rl"; depends=[BH ggplot2 mclust Rcpp RcppArmadillo reshape scales]; };
+  EMMIXmfa = derive2 { name="EMMIXmfa"; version="2.0.7"; sha256="178j76acdksajnh65l60l94zd4l8s3xmrj2am1h4i5g3jmmrj16i"; depends=[]; };
   EMMIXskew = derive2 { name="EMMIXskew"; version="1.0.3"; sha256="05y1ivbzbsfab90925l3ahzd3b8y5kjfk3f0p2s9s3sfyxphqah7"; depends=[KernSmooth lattice mvtnorm]; };
   EMMIXuskew = derive2 { name="EMMIXuskew"; version="0.11-6"; sha256="0japf0l0sj84jna7b5kirp6pgqa4c923ldwphb16ch2xxrgk5n5k"; depends=[MASS]; };
   EMMLi = derive2 { name="EMMLi"; version="0.0.3"; sha256="1b36kyzvrdljmkysggv8jyaip78pj32ms0xhj2y568hd419lkh2p"; depends=[]; };
   EMMREML = derive2 { name="EMMREML"; version="3.1"; sha256="0qwj4jlfhppjxwcjldh49b6idnagazrxybaid3k2c269wvxwvddq"; depends=[Matrix]; };
   EMP = derive2 { name="EMP"; version="2.0.2"; sha256="0l9wyxmcl8b6jiykc4mim6npmz5wrsapk2wgxbfhg27dwdb847ha"; depends=[ROCR]; };
   EMSC = derive2 { name="EMSC"; version="0.9.0"; sha256="13d915g7iyv724x35i9mr8msy5mhrpqhhva21vdinxbjdy6vdlr9"; depends=[pracma]; };
+  EMSHS = derive2 { name="EMSHS"; version="1.0.0"; sha256="1lpv3243z5765b1dihqz9hc3dpw76nwy14mmd4253sw8xpy25w41"; depends=[Rdpack]; };
   EMSaov = derive2 { name="EMSaov"; version="2.3"; sha256="1hpvwimhkl7za5s8j9n4a8883vy89jrxrhlh0k3cfprnndh4zz05"; depends=[shiny]; };
   EMT = derive2 { name="EMT"; version="1.1"; sha256="0m3av1x3jcp3hxnzrfb128kch9gy2zlr6wpy96c5c8kgbngndmph"; depends=[]; };
   EMVS = derive2 { name="EMVS"; version="1.0"; sha256="10ksrj1aav062cszg4ymnwsgib7a9hlnkksfcvmy26nx5gj2g7zl"; depends=[Rcpp RcppArmadillo]; };
   EMbC = derive2 { name="EMbC"; version="2.0.1"; sha256="0id68ws6l858nvyy790m17j9gddxmm97z66x24w5r58dxi6yfcrp"; depends=[maptools mnormt RColorBrewer Rcpp RcppArmadillo sp]; };
-  ENMeval = derive2 { name="ENMeval"; version="0.2.2"; sha256="1w8mjcmxxkx8lxxzzbjpv1i7cm6l8hhml7ynp80s9yiprr04bq9c"; depends=[dismo doParallel foreach raster rJava]; };
+  ENMeval = derive2 { name="ENMeval"; version="0.3.0"; sha256="0q5s8nxig8kbr0cblfmf3k20ri19fjs770a0fnzsk0kwlac414hw"; depends=[dismo doParallel foreach maxnet raster]; };
   ENiRG = derive2 { name="ENiRG"; version="1.0.1"; sha256="0yjy7g0pia4g18h7mawkxn77dnnqcajnbml21rrv63qwlr347355"; depends=[ade4 fgui gdata miniGUI raster rgrass7 sp]; };
   ENmisc = derive2 { name="ENmisc"; version="1.2-7"; sha256="07rix4nbwx3a4p2fif4wxbm0nh0qr7wbs7nfx2fblafxfzhh6jc7"; depends=[Hmisc RColorBrewer vcd]; };
   EQL = derive2 { name="EQL"; version="1.0-0"; sha256="0lxfiizkvsfls1km1zr9v980191af6qjrxwcqsa2n6ygzcb17dp5"; depends=[lattice ttutils]; };
   EQUIVNONINF = derive2 { name="EQUIVNONINF"; version="1.0"; sha256="103wrry0cmikprihmgx8y4kk1pnbjis7rs1xw13w14v902xkr2rq"; depends=[BiasedUrn]; };
-  ERP = derive2 { name="ERP"; version="2.0"; sha256="0y476ir8j54q20ibzpkla32wxp6yjv04ca67ry9kajq64ibflh7w"; depends=[corpcor fdrtool irlba mnormt pacman]; };
-  ERSA = derive2 { name="ERSA"; version="0.1.0"; sha256="063i9fmdccyrbap7fgas9371zv13gpcgzhlsphsn8jw9nmzpdii4"; depends=[broom car combinat dplyr ggplot2 leaps modelr purrr RColorBrewer shiny tidyr]; };
+  ERP = derive2 { name="ERP"; version="2.1"; sha256="0l3vgg7szfgi7a6qh93lh2sjnkwkhw02laxdl7x87jirmmsx3157"; depends=[corpcor fdrtool irlba mnormt pacman]; };
+  ERSA = derive2 { name="ERSA"; version="0.1.1"; sha256="1b76rfjndw7s0z4qb6rc2s95z0hr9xn4d5qaja9bd721r0g5862k"; depends=[broom car combinat dplyr ggplot2 leaps purrr RColorBrewer shiny tidyr]; };
   ES = derive2 { name="ES"; version="1.0"; sha256="1rapwf6kryr6allzbjk6wmxpj9idd3xlnh87rwbh6196xb7rp8lv"; depends=[]; };
   ESEA = derive2 { name="ESEA"; version="1.0"; sha256="06r5lki32mxkznj6yxvlz0ikqcxm3jbaralv4qp9xrw6dy6yyg27"; depends=[igraph parmigene XML]; };
   ESG = derive2 { name="ESG"; version="0.1"; sha256="1jw6239asv6lwxrz5v0r5pzg6v500bqxg8361sh4jj67rsrc7g9m"; depends=[]; };
@@ -1022,11 +1069,12 @@ in with self; {
   ETAS = derive2 { name="ETAS"; version="0.4.4"; sha256="0s0j7r1nyf82qz3lavsvyd11hl0jkq69c70wh00nfy93n2ygp376"; depends=[fields goftest lattice maps Rcpp spatstat]; };
   ETC = derive2 { name="ETC"; version="1.3"; sha256="1nvb9n0my7h1kq996mk91canxi6vxy3mzhrshrvm13ixvl48lkkh"; depends=[mvtnorm]; };
   ETLUtils = derive2 { name="ETLUtils"; version="1.4.1"; sha256="07wqrg7mnxmbdf2ibxj5kppl4sd3l608yfhbbsngkhpsrm203qva"; depends=[bit ff]; };
-  EValue = derive2 { name="EValue"; version="1.1.4"; sha256="09b66sck5r2ysjxpjhwgjcapx6wj1jg3v56b0x48dk7bqzmmizsd"; depends=[devtools ggplot2 metafor msm]; };
+  EValue = derive2 { name="EValue"; version="1.1.5"; sha256="0lfm3458mh1rfcxhr4gm8gls9lssy277fxi5rbkysls88282j4dc"; depends=[devtools ggplot2 metafor msm]; };
   EW = derive2 { name="EW"; version="1.1"; sha256="0wc3v9qisiikvlp28xhlgsxb92fhkm6vslia6d0vpihyai0p1h1g"; depends=[]; };
   EWGoF = derive2 { name="EWGoF"; version="2.2.1"; sha256="0n1fx6k9ndb2s9ybzizbqz662c9s1f48q6v697pqhnfy9si1nplz"; depends=[Rcpp]; };
   EXRQ = derive2 { name="EXRQ"; version="1.0"; sha256="1iqsr52sl2j5q03122a7rsp6n6a2bkysk2r908c89l36gk4sj2i5"; depends=[mnormt quantreg]; };
-  Eagle = derive2 { name="Eagle"; version="1.0.2"; sha256="0n36h23jkac93d9f13bdwvac0fv198fjmh3981z32cn9glz0xbl8"; depends=[data_table matrixcalc Rcpp RcppEigen shiny shinyBS shinyjs shinythemes]; };
+  EZtune = derive2 { name="EZtune"; version="1.0.0"; sha256="0a74wnmxbvnm1zil0slg4kphvqc1n03y26zp1a0gpawpkfxcmbch"; depends=[ada doParallel e1071 GA gbm mlbench]; };
+  Eagle = derive2 { name="Eagle"; version="1.1.0"; sha256="1n2aqp6pd7cglhmnhf8g086xv4468hhqx6qvlwjbvj6diwhym35c"; depends=[data_table matrixcalc Rcpp RcppEigen shiny shinyBS shinyFiles shinyjs shinythemes]; };
   EasyABC = derive2 { name="EasyABC"; version="1.5"; sha256="17qv6y8sf2iwwqcv5wfg6sii259gv5jyr72dnfpir2bw78wb3mqx"; depends=[abc lhs MASS mnormt pls tensorA]; };
   EasyHTMLReport = derive2 { name="EasyHTMLReport"; version="0.1.1"; sha256="1hgg8i7py7bx48cldyc7yydf0bggmbj3fx3kwiv9jh1x5wyh929z"; depends=[base64enc ggplot2 knitr markdown reshape2 scales xtable]; };
   EasyMARK = derive2 { name="EasyMARK"; version="1.0"; sha256="10slkblbyxq98c3sxgs194dnkx996khfcpxj6jhz355dp35z7c9d"; depends=[coda doParallel foreach MASS random rjags stringr]; };
@@ -1035,30 +1083,32 @@ in with self; {
   Ecdat = derive2 { name="Ecdat"; version="0.3-1"; sha256="1lvfp2ih8ng3kn3cia687j5fd27iwiak7gk3bhgjp8bnlgblqq02"; depends=[Ecfun]; };
   Ecfun = derive2 { name="Ecfun"; version="0.1-7"; sha256="0s4hhvwyi411xr7c1fv098nmwqjcyvh8vy65j5w9hd80l864lvkl"; depends=[fda gdata jpeg MASS RCurl stringi TeachingDemos tis XML]; };
   EcoGenetics = derive2 { name="EcoGenetics"; version="1.2.1-5"; sha256="1953q374msvdw91m2nagxkwh5r9gnq5qss6l6mf34hayq3kwm8s9"; depends=[d3heatmap doParallel edgebundleR foreach ggplot2 htmlwidgets igraph jsonlite magrittr networkD3 party pheatmap plotly raster reshape2 rgdal rkt SoDA sp]; };
-  EcoHydRology = derive2 { name="EcoHydRology"; version="0.4.12"; sha256="03dzdw79s0cnnd7mv6wfxw374yf66dlcmj10xh6sh5i352697xp1"; depends=[DEoptim operators topmodel XML]; };
+  EcoHydRology = derive2 { name="EcoHydRology"; version="0.4.12.1"; sha256="075kgy6cxppkclk6nj5xs1f5yv9w8cpr09xwhf2101a6wswknb88"; depends=[DEoptim operators topmodel XML]; };
   EcoIndR = derive2 { name="EcoIndR"; version="1.2"; sha256="1p2m4kramcf71xlm9hbk5l5mb8nmjfac1p3csai7m2gmikf559yj"; depends=[]; };
-  EcoNetGen = derive2 { name="EcoNetGen"; version="0.2.0"; sha256="194gry90h6m91zjvv7na8gyf3rws3mzv7rk5xhwrr2znlgcalzis"; depends=[ggplot2 igraph]; };
+  EcoNetGen = derive2 { name="EcoNetGen"; version="0.2.2"; sha256="1gz3h97i8bcd3nkkrfl5wwxwjkw0z7qvj1bjksdjplchkag0nk3x"; depends=[ggplot2 igraph]; };
   EcoSimR = derive2 { name="EcoSimR"; version="0.1.0"; sha256="13ni3vdfahqjyb9xrv7fmnbj5m5n3jwfh1bl9r0bvhi5w72kb7rj"; depends=[MASS]; };
   EcoTroph = derive2 { name="EcoTroph"; version="1.6"; sha256="0zi6g0ra107s47r32mm9h6r1wll3avi0mpjmhcr0nj9y48nv14w3"; depends=[XML]; };
-  EcoVirtual = derive2 { name="EcoVirtual"; version="1.0"; sha256="1adhxwi22psr81xh1szjvn6ycv4zw31xjnswk65iazk3sc4vz7wc"; depends=[]; };
+  EcoVirtual = derive2 { name="EcoVirtual"; version="1.1"; sha256="1aryl2sb5ak390lgnm427ilm6xv9lmsjhwdnapzc033zvqb099gj"; depends=[]; };
   Ecohydmod = derive2 { name="Ecohydmod"; version="1.0.0"; sha256="0imkzjqp3g28l42jz5m4p85wg5rawmn9hy1wys9xndnaliv6d7r2"; depends=[]; };
   EconDemand = derive2 { name="EconDemand"; version="1.0"; sha256="1slpwiaxj7w21zdri9myrzwbwzl62m3cnp0g4fr2rkdlzgb6j5yj"; depends=[]; };
   EdSurvey = derive2 { name="EdSurvey"; version="2.0.3"; sha256="1aw0b2i7vhfz11nr6ywk873cmgvpfvim89r3m6paqgnq01yyw8nw"; depends=[data_table Formula haven LaF lfactors magrittr MASS Matrix NAEPprimer RColorBrewer readr readxl rvest stringi stringr tibble wCorr xml2 xtable]; };
   EffectLiteR = derive2 { name="EffectLiteR"; version="0.4-2"; sha256="1vkg5gi0gysnw0gz9ah8pdnnlkdfsz0jy53ps2jnnpy8lbr45zc9"; depends=[car foreign ggplot2 lavaan lavaan_survey nnet shiny survey]; };
   EffectStars = derive2 { name="EffectStars"; version="1.9"; sha256="15n5mrba2s0qxcg3zikfwpxqwv38h39zmvj8sz62ni4pdhrhhjh3"; depends=[VGAM]; };
   EffectStars2 = derive2 { name="EffectStars2"; version="0.1-2"; sha256="0121zb627zwkgbb84sn2dclph56dc5rkfjpci5xwd0w99vh3q66l"; depends=[miscTools VGAM]; };
-  EffectTreat = derive2 { name="EffectTreat"; version="0.3"; sha256="1y8b1867idjbd7i39hhryg4nyijlv6d828z0jspp80fka3sp8xpw"; depends=[]; };
+  EffectTreat = derive2 { name="EffectTreat"; version="0.4"; sha256="05r8frrir2dnivj21raczchf9qligqdccnnpj1kwi0zgr5h4spz6"; depends=[]; };
   EffectsRelBaseline = derive2 { name="EffectsRelBaseline"; version="0.5"; sha256="1dsnakcrgmlx44599ii92wvhxbxrh0hij59709wsskx1x1152zvh"; depends=[]; };
   EfficientMaxEigenpair = derive2 { name="EfficientMaxEigenpair"; version="0.1.4"; sha256="1s0i9a2vk2g4f5gadsvzjfkw91hcjsrbyjg2vgnj1v17xrwgp40w"; depends=[]; };
   ElastH = derive2 { name="ElastH"; version="0.3.1"; sha256="1xgmz0xirvdyjz8l31zb2j91nj0g8ffhvzp44b97473fsj06n1g6"; depends=[dlm]; };
   ElemStatLearn = derive2 { name="ElemStatLearn"; version="2015.6.26"; sha256="0r8d0fm4yx7iawcsikksd7i01kbyqz3xkdls74f3ngkvj4iq1rqc"; depends=[]; };
   EloChoice = derive2 { name="EloChoice"; version="0.29"; sha256="1r54laim7i8hzgyir47xq7qw8hxzsdw1ss10sljq1rm2lpsci6wk"; depends=[Rcpp RcppArmadillo]; };
+  EloOptimized = derive2 { name="EloOptimized"; version="0.3.0"; sha256="185vh8h6r5wqcbaq3glq8k3fr8jp6h3q2h2ly54agi6bi3fvbs05"; depends=[BAMMtools dplyr lubridate magrittr reshape2 rlang rlist]; };
   EloRating = derive2 { name="EloRating"; version="0.43"; sha256="0gzpi4qjiqn0lzjwy37pkz6fg7dkp2hv2dfqgzfk32wsj0bswgab"; depends=[zoo]; };
   ElstonStewart = derive2 { name="ElstonStewart"; version="1.1"; sha256="1y2g4x3fhi78c2406bk8r8c3x9zhx8ya3qlbnypdm65j0minixsn"; depends=[digest kinship2]; };
   Emcdf = derive2 { name="Emcdf"; version="0.1.2"; sha256="0jb59jp1drcwipmk6yzg0cl366i8nhffa13c3x3fmhaj7ifv77vv"; depends=[lattice Rcpp]; };
   EmiStatR = derive2 { name="EmiStatR"; version="1.2.1.1"; sha256="1fid29ipmrq2557wcva1miifgwxdcm8g27ws5wb1lq6yiaz0z4w0"; depends=[doParallel foreach lattice shiny xts zoo]; };
-  EmissV = derive2 { name="EmissV"; version="0.664.7"; sha256="09m5h0fgj7pavfxwh4anihpq69dkqay9z4xdj0c3rbqvsxgq4bx3"; depends=[data_table lwgeom ncdf4 raster sf sp units]; };
+  EmissV = derive2 { name="EmissV"; version="0.664.9"; sha256="0y7bmkv5lwlgimc5prfib321z1wq7xvyfgrfv8wk0wb17d6kk0dp"; depends=[data_table lwgeom ncdf4 raster sf sp units]; };
   EmpiricalCalibration = derive2 { name="EmpiricalCalibration"; version="1.3.6"; sha256="0fiwvdzcyz6ayzqfa6j2ygpab1cwbi04gd2c2g1j9qbdq95myipa"; depends=[ggplot2 gridExtra]; };
+  EncDNA = derive2 { name="EncDNA"; version="1.0.1"; sha256="1mp9blxa29jwimgp58ligayzq3ydfa2sccs2ppn3ki2sqq01xdpp"; depends=[Biostrings]; };
   EnergyOnlineCPM = derive2 { name="EnergyOnlineCPM"; version="1.0"; sha256="1a3wvclqdwcvq5inhliwjnd7xzqbjvzs8h8ncy6qlhjq6s5n7nm8"; depends=[energy MASS]; };
   EngrExpt = derive2 { name="EngrExpt"; version="0.1-8"; sha256="0zclvckj2i7j4kfs58hcjcl722vl2y6dcnjz238cjfgwv279gqhp"; depends=[lattice]; };
   EnsCat = derive2 { name="EnsCat"; version="1.1"; sha256="1rp354fqq2ihjrmqw9j1qdy86md80xml5sgh2zbyabw3zddmgyn2"; depends=[dendextend ggdendro ggplot2 seqinr]; };
@@ -1068,12 +1118,12 @@ in with self; {
   EnsemblePenReg = derive2 { name="EnsemblePenReg"; version="0.7"; sha256="00218yh0vzlb5g94asq5nz4i8blppskdzz9fl4c0v3fld3kxz2md"; depends=[EnsembleBase glmnet]; };
   EntropyEstimation = derive2 { name="EntropyEstimation"; version="1.2"; sha256="13kb83lfpkw6yq687j0ci23yn5c9dqjibybyyaplk6jixy08lrvy"; depends=[]; };
   EntropyExplorer = derive2 { name="EntropyExplorer"; version="1.1"; sha256="02ljnq9ayxg4lrrnb6nlxr1k5ki8dd5i8hjb9fvvb19hwr2id5h4"; depends=[]; };
-  EnvCpt = derive2 { name="EnvCpt"; version="1.0"; sha256="0rdcxb924ij3rdcnzfz8pxahvwza2qi2siqpxsafjkg2mrqil9kj"; depends=[changepoint forecast MASS zoo]; };
+  EnvCpt = derive2 { name="EnvCpt"; version="1.1.1"; sha256="10j0hsy2ff1zj6bb03cngrw19ynyz65rcpxyk6vpqdqcdkpf3zf9"; depends=[changepoint MASS zoo]; };
   EnvNicheR = derive2 { name="EnvNicheR"; version="1.4"; sha256="0hxx9wmzlw0clvdgdsy8msc78nvm81j3naxr57i7lqqa360sjy3a"; depends=[IDPmisc]; };
-  EnvStats = derive2 { name="EnvStats"; version="2.3.0"; sha256="0f0sda26in2a25vq8xr6pkskjk10q2pg463h9c1xap3bghq4xgc3"; depends=[ggplot2 MASS nortest]; };
+  EnvStats = derive2 { name="EnvStats"; version="2.3.1"; sha256="0ang2s222znrvzvidyvj2sa2bqx95bxicff64p6w2a7z88mx8lyp"; depends=[ggplot2 MASS nortest]; };
   EnviroPRA = derive2 { name="EnviroPRA"; version="1.0"; sha256="0yirh3vy7wap0qmm3kvjz9y68gcvp9i8qshv80wh8aijxwklpr8n"; depends=[fitdistrplus kSamples MASS truncdist]; };
   EnviroStat = derive2 { name="EnviroStat"; version="0.4-2"; sha256="0ckax6vkx0vwczn21nm1dr8skvpm59xs3dgsa5bs54a3xhn5z9hs"; depends=[MASS]; };
-  Epi = derive2 { name="Epi"; version="2.30"; sha256="0gfq4zg2c9cnwh7islsbbzaw80a2wwnh3kjv3wr1fvp11hhhdknk"; depends=[cmprsk data_table etm MASS Matrix numDeriv plyr survival zoo]; };
+  Epi = derive2 { name="Epi"; version="2.32"; sha256="14n24xlm7pwdc54w2hlpjhfal1zpzm87rv3rjfckiz47d3w7dwqm"; depends=[cmprsk data_table etm MASS Matrix mgcv numDeriv plyr survival zoo]; };
   EpiBayes = derive2 { name="EpiBayes"; version="0.1.2"; sha256="1qfir0dl085c9ib1acsygmj7gihc4ar98k5niqdsgnmji88h17y2"; depends=[coda epiR scales shape]; };
   EpiContactTrace = derive2 { name="EpiContactTrace"; version="0.12.0"; sha256="1i84fslz8sdngvkv34zhzjwzrzzxx6f4s31p8f5smmf028jlpyys"; depends=[]; };
   EpiCurve = derive2 { name="EpiCurve"; version="2.1-1"; sha256="0y6llpxa8xyfn9cxhq35mzfp1gc7la1708q85q4hz0l115abvk92"; depends=[dplyr ggplot2 ISOweek RColorBrewer scales timeDate]; };
@@ -1082,12 +1132,13 @@ in with self; {
   EpiILM = derive2 { name="EpiILM"; version="1.4.2"; sha256="16vml2p7c4nv0lfis661x7b9wimrni1ncpa256dh99cps9508j28"; depends=[coda]; };
   EpiILMCT = derive2 { name="EpiILMCT"; version="1.1.2"; sha256="1rxq9z5lhcgzn02d9k6vgl2cb5x0s9gsly63byx4gg1h91bsvmp6"; depends=[coda]; };
   EpiModel = derive2 { name="EpiModel"; version="1.6.5"; sha256="1h9490x7vna8z2dib6vgkxhpqvbybg655k88jn48i6qkda8dzv54"; depends=[ape deSolve doParallel ergm foreach ggplot2 lazyeval network networkDynamic RColorBrewer tergm]; };
-  EpiStats = derive2 { name="EpiStats"; version="1.1"; sha256="0xd9b3miyk2jijraph7zac7k7hqm0vn9wg1fsccfl17xy6h2wq2w"; depends=[dplyr epiR]; };
+  EpiStats = derive2 { name="EpiStats"; version="1.2"; sha256="102s7637afm3scif20r75wcfkz9g8k4w55qxv1gqqc1kcmn2zqar"; depends=[dplyr epiR]; };
   EpistemicGameTheory = derive2 { name="EpistemicGameTheory"; version="0.1.2"; sha256="0b2gnrvhlsw85qv63ib32pj55l7w63wgvbrj5rb209g6h46fby8m"; depends=[lpSolve]; };
   Eplot = derive2 { name="Eplot"; version="1.0"; sha256="1glmkjjj432z9g4gi56pgvfrm5w86iplirnd5hm4s99qci2hgc64"; depends=[]; };
-  Equalden_HD = derive2 { name="Equalden.HD"; version="1.0"; sha256="19b529yaffls43fr5vrcrrvkia27mjrcx69r9svafk61z96i6pfm"; depends=[]; };
+  Equalden_HD = derive2 { name="Equalden.HD"; version="1.1"; sha256="16cs9hmr14byy11dapkh8c7ygpkks00lirbbpmy5bxgi4pvif8a3"; depends=[]; };
   EstCRM = derive2 { name="EstCRM"; version="1.4"; sha256="1p99hmmyiy3havj72jd4xksr1j9gfmy0i7z7f3vqs5sqp72alq1k"; depends=[Hmisc lattice]; };
   EstHer = derive2 { name="EstHer"; version="1.0"; sha256="1j8sczwfzil16j85mw5d1c7cxy7wimh0qq7zhmkh7mfnr36m9phr"; depends=[glmnet MASS Rcpp RcppArmadillo]; };
+  EstMix = derive2 { name="EstMix"; version="1.0.1"; sha256="13zwhxm0qm83c8k5k4slvq2snkmbq1zz3i5cqvxxwhvkb4b8aja4"; depends=[PSCBS Rcpp RcppArmadillo]; };
   EstSimPDMP = derive2 { name="EstSimPDMP"; version="1.2"; sha256="05gp0gdix4d98111sky8y88p33qr5w4vffkp6mg9klggn37kdj8j"; depends=[]; };
   EstimateGroupNetwork = derive2 { name="EstimateGroupNetwork"; version="0.1.2"; sha256="148srhlpzh0scvnkjbkyia1pr8a2ridabm3dahw4zn7p3cryiyb1"; depends=[igraph qgraph]; };
   EthSEQ = derive2 { name="EthSEQ"; version="2.1.2"; sha256="0w75d8kw1bf4mfgk8rrx6vzq002z2588kxgadyfag0vk9s4akxi3"; depends=[data_table gdsfmt geometry MASS plot3D SNPRelate]; };
@@ -1096,11 +1147,12 @@ in with self; {
   EvalEst = derive2 { name="EvalEst"; version="2015.4-2"; sha256="1jkis39iz3zvi5yfd0arvw7bym6naq45f5cravywg8c37n9v967x"; depends=[dse setRNG tfplot tframe]; };
   EvaluationMeasures = derive2 { name="EvaluationMeasures"; version="1.1.0"; sha256="0b65y4rb650hhlgc18z0sm0danrrawqkazzdl9krl877djrgx87g"; depends=[]; };
   Evapotranspiration = derive2 { name="Evapotranspiration"; version="1.12"; sha256="065rd8hwbzanfd0px0nli9szj9afm06a07vxl9bwj9n744whi3r3"; depends=[zoo]; };
+  EventDetectR = derive2 { name="EventDetectR"; version="0.3.1"; sha256="1nh859q9d2k9fpgyj9g7dvhbhbychhng174mlmyl8x9l7dvmiydx"; depends=[forecast imputeTS]; };
   EventStudy = derive2 { name="EventStudy"; version="0.34"; sha256="04w8cjmpy0ndcrad20ni9wa03pds8bvirks258pxyflx2kdvj0bf"; depends=[curl data_table dplyr ggplot2 httr jsonlite magrittr miniUI openxlsx purrr RColorBrewer readr rstudioapi scales shiny stringr testthat tidyquant]; };
   EvoRAG = derive2 { name="EvoRAG"; version="2.0"; sha256="0gb269mpl2hbx1cqakv3qicpyrlfb4k8a3a7whhg90masbgmh8f6"; depends=[]; };
   EvolutionaryGames = derive2 { name="EvolutionaryGames"; version="0.1.0"; sha256="1v6xpxk4kbjbmv8vh517rd76gyrd9znpxqdh4jqz8lvdpnpla4wv"; depends=[deSolve geometry ggplot2 interp MASS reshape2 rgl]; };
   Evomorph = derive2 { name="Evomorph"; version="0.9"; sha256="1br2fyggwz2mxpic8sk384xq1lpbpv0j5gf6xyzhkn2n7kfpf6d5"; depends=[geomorph ggplot2 reshape2 stringr]; };
-  ExPanDaR = derive2 { name="ExPanDaR"; version="0.2.0"; sha256="1iwkzrfdvxgik5c1vq04351var0micf4vh6zmkzyd8qbyvxwnnch"; depends=[CodeDepends corrplot dplyr DT ggplot2 Hmisc kableExtra lfe PKI scales shiny shinycssloaders stargazer tictoc tidyr]; };
+  ExPanDaR = derive2 { name="ExPanDaR"; version="0.3.0"; sha256="1d6jzgdyawyvs72jxlw4dxkk6566ya67p6lsj70wdakmaixwfsmj"; depends=[corrplot dplyr DT ggplot2 Hmisc kableExtra lfe lmtest multiwayvcov PKI rio scales shiny shinycssloaders stargazer tictoc tidyr]; };
   ExPosition = derive2 { name="ExPosition"; version="2.8.19"; sha256="04s9kk8x6khvnryg6lqdwnyn79860dzrjk8a9jyxgzp94rgalnnz"; depends=[prettyGraphs]; };
   Exact = derive2 { name="Exact"; version="1.7"; sha256="0d0h406w2l99gxq6pmh9crxxrvdidcajk7bqzmifl7nfb77vp1av"; depends=[]; };
   ExactCIdiff = derive2 { name="ExactCIdiff"; version="1.3"; sha256="1vayq8x7gk1fnr1jrlscg6rb58wncriybw4m1z0glfgzr259103y"; depends=[]; };
@@ -1127,16 +1179,15 @@ in with self; {
   FBN = derive2 { name="FBN"; version="1.5.1"; sha256="0723krsddfi4cy2i3vd6pi483qjxniychnsi9r8nw7dm052nb4sf"; depends=[]; };
   FCGR = derive2 { name="FCGR"; version="1.0-0"; sha256="015nnnc9fasx0qjrc3lbxv14rqwyx36xzsw9076grwm5pqahrdsb"; depends=[kerdiest KernSmooth MASS mgcv nlme pspline sfsmisc]; };
   FCMapper = derive2 { name="FCMapper"; version="1.1"; sha256="1yjh8rs65nqslvwv7x4rif469zds41s7v3vhq6pca1y17kvj2in1"; depends=[igraph]; };
-  FCNN4R = derive2 { name="FCNN4R"; version="0.6.2"; sha256="089vq8kaag4j6xl3h9pb3ch8lfg0mmi96jgm4xhgr40rr0m3ijma"; depends=[Rcpp]; };
   FD = derive2 { name="FD"; version="1.0-12"; sha256="0xdpciq14i8rh7v6mw174hip64r7mrzhx7gwri3vp9y7a1380sbi"; depends=[ade4 ape geometry vegan]; };
   FDGcopulas = derive2 { name="FDGcopulas"; version="1.0"; sha256="1i86ns4hq74y0gnxfschshjlc6if3js0disjb4bwfizaclwbw3as"; depends=[numDeriv randtoolbox Rcpp]; };
   FDRSeg = derive2 { name="FDRSeg"; version="1.0-3"; sha256="0dh6m5vlx664kryh56jzi3zxydjwa5217nhbwn6adp0q5qdh6d8a"; depends=[Rcpp stepR]; };
   FDRreg = derive2 { name="FDRreg"; version="0.1"; sha256="17hppvyncbmyqpi7sin9qsrgffrnx8xjcla2ra6y0sqzam1145y4"; depends=[fda mosaic Rcpp RcppArmadillo]; };
   FDRsampsize = derive2 { name="FDRsampsize"; version="1.0"; sha256="0g8kawzyi9x5yndvh330wzqw6rvcnprwq56ngd0j6z51hvvw8qhw"; depends=[]; };
-  FDboost = derive2 { name="FDboost"; version="0.3-1"; sha256="1bwf3kkx912386ljb210hci1y2vg0wcd6v6i6arhzzbr7gc0y39q"; depends=[gamboostLSS MASS Matrix mboost mgcv stabs zoo]; };
-  FENmlm = derive2 { name="FENmlm"; version="2.1.1"; sha256="00cm1k5lqa7i2aginhkw4f430gigr7cj7g6shr83z61axqfmwdg4"; depends=[MASS Matrix numDeriv Rcpp]; };
+  FDboost = derive2 { name="FDboost"; version="0.3-2"; sha256="1ahdq49ijj4j2yykmzbpgrjn0sm09nzmd33k317y157hnf6zyxvs"; depends=[gamboostLSS MASS Matrix mboost mgcv stabs zoo]; };
+  FENmlm = derive2 { name="FENmlm"; version="2.2.2"; sha256="1k8andhpk8drdcjnwvv7hzyfj0qnp6h843naxdvhbj1qp9gs9vr0"; depends=[Formula MASS numDeriv Rcpp]; };
   FFD = derive2 { name="FFD"; version="1.0-6"; sha256="19yqb45qj54fmjkqfjbcqsx3wz6fk8inrqif9ds93xjkm6aaiqgp"; depends=[R2HTML tkrplot]; };
-  FFTrees = derive2 { name="FFTrees"; version="1.3.5"; sha256="0qz3w7qh8lgl4fn2hmrd4mnp17vaz5yf7kcpcrm038xvqq3w5c5k"; depends=[circlize e1071 igraph progress randomForest rpart stringr yarrr]; };
+  FFTrees = derive2 { name="FFTrees"; version="1.4.0"; sha256="0s2h81vdh8d41kwz5ja831q11wrb7ywdd7aq46x3y9sgg3aabd44"; depends=[caret circlize e1071 igraph pROC progress randomForest rpart stringr yarrr]; };
   FField = derive2 { name="FField"; version="0.1.0"; sha256="05q16v2vv64qhbnf2l66dwzmvgzyaq8vxwwdabp534bw7z7zpi8q"; depends=[]; };
   FGSG = derive2 { name="FGSG"; version="1.0.2"; sha256="1r3sjhzf9gcnbcx6rqr1s555z8lcwm3fxl096md2jji336ijlk79"; depends=[]; };
   FGalgorithm = derive2 { name="FGalgorithm"; version="1.0"; sha256="1dq6yyb3l6c9fzvk9gs6pb240xb5hvc6fh8p3qd3c91b3m289mcc"; depends=[]; };
@@ -1148,17 +1199,19 @@ in with self; {
   FILEST = derive2 { name="FILEST"; version="1.0.3"; sha256="0i622rfr9sb22c922kk0gg4l1akx54m6zx7wy3w1p5xrr1zjjyvp"; depends=[KRIS rARPACK]; };
   FIT = derive2 { name="FIT"; version="0.0.5"; sha256="1hky7m5b7n0d7lm79b7l7p055f8zfl7gsjdvbq09c4iwdli8h33n"; depends=[gglasso MASS Rcpp RcppEigen XML]; };
   FITSio = derive2 { name="FITSio"; version="2.1-0"; sha256="021xmbavigg70m96xw1bvsdasi5yj2wmafgb6xw4b09fmyv9hvjp"; depends=[]; };
+  FKF = derive2 { name="FKF"; version="0.1.5"; sha256="1qzf7y3f4xfirjkm795rcxckjbw6sn7xpilhkyvayqm2vyhf7518"; depends=[RUnit]; };
   FLLat = derive2 { name="FLLat"; version="1.2-1"; sha256="0306bpwp2az4x4m5sv88hlh7vs0y5isfby7lxrn2gjnk76gg6mw1"; depends=[gplots]; };
   FLR = derive2 { name="FLR"; version="1.0"; sha256="0k50vi73qj7sjps0s6b2hq1cmpa4qr2vwkpd2wv2w1hhhrj8lm0n"; depends=[combinat]; };
-  FLSSS = derive2 { name="FLSSS"; version="5.2"; sha256="1px9n0rnjg32ngy8bs0z1jzmspnkn15q273w74vxjykqfd5xayfd"; depends=[Rcpp RcppParallel]; };
-  FLightR = derive2 { name="FLightR"; version="0.4.6"; sha256="0q1azhpdkasjsca5z4p0gnp5iirs6f9dyg6pn8269x7k1mw0pib4"; depends=[bit CircStats circular fields GeoLight ggmap ggplot2 ggsn maptools mgcv nlme raster RcppArmadillo rgdal rgeos sp truncnorm]; };
+  FLSSS = derive2 { name="FLSSS"; version="7.6"; sha256="1cjhzjl8s4bnx457v4pal945j2ij75s8gdbbr9a3cambh0sc821y"; depends=[Rcpp RcppParallel]; };
+  FLightR = derive2 { name="FLightR"; version="0.4.7"; sha256="0qnhyn363c8yb541ngygm5jzax1csjdq0mmvvvazncirgk45q9y5"; depends=[bit CircStats circular fields GeoLight ggmap ggplot2 ggsn maptools mgcv nlme raster RcppArmadillo rgdal rgeos sp truncnorm]; };
   FMC = derive2 { name="FMC"; version="1.0.0"; sha256="1pfqxx7slgcmw4al7i8hy59f4han6b0b7b5az7yh1mscdnghl9bj"; depends=[minimalRSD]; };
   FME = derive2 { name="FME"; version="1.3.5"; sha256="1r1mb61hylsgcryac35bz1pzfcw27gzpvfwkkf0sh754ya6xh69n"; depends=[coda deSolve MASS minpack_lm minqa rootSolve]; };
   FMP = derive2 { name="FMP"; version="1.4"; sha256="0w11a78nz4n7zih9h00xkv7prsy9hlxphbpa7hpnbvq9r98g08qm"; depends=[]; };
   FMStable = derive2 { name="FMStable"; version="0.1-2"; sha256="00viigpqfbqc4hyl9cwicbwqf2ksjak28qrqaa16jhbqz93j4fck"; depends=[]; };
   FMsmsnReg = derive2 { name="FMsmsnReg"; version="1.0"; sha256="0d58n7lz8d6xgzvyznmhw1byshyiiwk8dc462qr18cl51p0lqnkv"; depends=[mvtnorm]; };
-  FNN = derive2 { name="FNN"; version="1.1"; sha256="1kncmiaraq1mrykb9fj3fsxswabk3l71fnp1vks0x9aay5xfk8mj"; depends=[]; };
+  FNN = derive2 { name="FNN"; version="1.1.2.1"; sha256="1n61jrcmakqif8f827x4qnlhm2jqpj5fgjj65c4p0kdd8lzw8pqp"; depends=[]; };
   FPCA2D = derive2 { name="FPCA2D"; version="1.0"; sha256="18bb90ppd9gd8pg9jxfyfkmlsaqk8w25fgaj9fk18ybm2nhsxqm6"; depends=[corpcor]; };
+  FPCA3D = derive2 { name="FPCA3D"; version="1.0"; sha256="1hrk9caad2s76dx59clxhia45a85khk1y2ii7955f336x55q34a5"; depends=[]; };
   FPDclustering = derive2 { name="FPDclustering"; version="1.2"; sha256="1qj1dddzcy2jx4903kmzzhcwfi13c2x9kva2n4rzqh5n560nvg57"; depends=[ThreeWay]; };
   FPV = derive2 { name="FPV"; version="0.5"; sha256="0pxa8lbcxw2hx2n0frkx0pdndlcfm7gnh9qay9q53cf5gqzzwvvc"; depends=[FuzzyNumbers FuzzyNumbers_Ext_2]; };
   FRACTION = derive2 { name="FRACTION"; version="1.0"; sha256="0g25dzsbharsq8bzfka96zccaqppdclax24mz5m080ddg4y8zj49"; depends=[]; };
@@ -1167,14 +1220,14 @@ in with self; {
   FREGAT = derive2 { name="FREGAT"; version="1.1.0"; sha256="04rcbwbwi53d8his0ss9hj4s2c28r292f4f2ayl70av7k74nnccy"; depends=[Matrix]; };
   FREQ = derive2 { name="FREQ"; version="1.0"; sha256="01nra30pbnqdd63pa87lcws3hnhhzybcjvx2jqyxjghn6khz47j0"; depends=[]; };
   FRESA_CAD = derive2 { name="FRESA.CAD"; version="3.0.1"; sha256="05hcds1g1hkpr3fww1i462p633xlhwv594fpbphvw8fm10mc0hns"; depends=[Hmisc miscTools pROC Rcpp RcppArmadillo stringr]; };
-  FRK = derive2 { name="FRK"; version="0.2.1"; sha256="042j6n3yx46123d0qsghbynjf1h0iri4kfd92z5nbcgv7wggk4d3"; depends=[digest dplyr ggplot2 Hmisc Matrix plyr Rcpp sp spacetime sparseinv]; };
+  FRK = derive2 { name="FRK"; version="0.2.2"; sha256="0m0ngxanyq19myzza4fb75k9vb67mv17iny847bv9qrgg2vbm5r8"; depends=[digest dplyr ggplot2 Hmisc Matrix plyr Rcpp sp spacetime sparseinv]; };
   FRegSigCom = derive2 { name="FRegSigCom"; version="0.2.2"; sha256="1jbksgx561fc4bgsyz3d1b3amqc80bzzl96ri74rbd3lqbhgrn0y"; depends=[fda Matrix Rcpp RcppEigen]; };
   FSA = derive2 { name="FSA"; version="0.8.20"; sha256="1vvsjwyb03wiqxlzgig3gxn9aj5lr7kx183gsjz2xysxp07rv9hf"; depends=[car dplyr dunn_test epitools gplots lmtest plotrix plyr sciplot]; };
   FSAdata = derive2 { name="FSAdata"; version="0.3.6"; sha256="0r4g3s4a7hizxj7zlp8wb5sldnx6kc99vak8ww715bhzpzq40qf8"; depends=[]; };
   FSInteract = derive2 { name="FSInteract"; version="0.1.2"; sha256="1aci1398aaz0nrl5jy6yh7xik355wf7pwngrsak4qsi94vdj05iy"; depends=[Matrix Rcpp]; };
   FSTpackage = derive2 { name="FSTpackage"; version="0.1"; sha256="1fjqsl59fg4x9vkbv4b0qmfxlaa2q3rzpl40grv24yg6ixfagmdb"; depends=[CompQuadForm MASS Matrix mvtnorm SKAT]; };
   FSelector = derive2 { name="FSelector"; version="0.31"; sha256="1ryqrwz9h7ggxvmxyw4viajlkvd3r7i6ihcfrwsz6axyk5y0qarg"; depends=[digest entropy randomForest RWeka]; };
-  FSelectorRcpp = derive2 { name="FSelectorRcpp"; version="0.1.10"; sha256="1i844k8qacbxv4hzv2d8d0jxijf2p2r1xh1ihcp4dijc9ap8wvg8"; depends=[BH foreach iterators Rcpp RcppArmadillo testthat]; };
+  FSelectorRcpp = derive2 { name="FSelectorRcpp"; version="0.2.1"; sha256="1xzb59p3byby5wbas48qpzkmsai7xk0nk1g1iz80m22b9p521n85"; depends=[BH foreach iterators Rcpp RcppArmadillo testthat]; };
   FTICRMS = derive2 { name="FTICRMS"; version="0.8"; sha256="0kv02mdmwflhqdrkhzb55si5qnqqgdadgyabqc2hwr6iccn7aq8c"; depends=[lattice Matrix]; };
   FTRLProximal = derive2 { name="FTRLProximal"; version="0.3.0"; sha256="0wnlswvxiw7gvmn9yq1v8jixwspfbvcg3rklqcd0ib38d72ww7w0"; depends=[Matrix]; };
   FUNLDA = derive2 { name="FUNLDA"; version="1.1"; sha256="1qqwpics63qab43mvpm275rk9iywawr4gap0qa832i6iy3jp1h3c"; depends=[Rcpp RcppArmadillo]; };
@@ -1182,7 +1235,7 @@ in with self; {
   FWDselect = derive2 { name="FWDselect"; version="2.1.0"; sha256="0w0hkmhcz7h1lixk7p3yffbbalgxwh2lv463vqz361k80sri6wz7"; depends=[cvTools mgcv]; };
   FacPad = derive2 { name="FacPad"; version="3.0"; sha256="0h7knzin0rfk25li127zwjsyz223w7nx959cs328p6b2azhgn59b"; depends=[MASS Rlab]; };
   FactMixtAnalysis = derive2 { name="FactMixtAnalysis"; version="1.0"; sha256="1l4wfp39b7g38vdk6jpd5zq08sjhsg0s71f662aca2rj6l3a2x3r"; depends=[MASS mvtnorm]; };
-  FactoClass = derive2 { name="FactoClass"; version="1.2.4"; sha256="0rzbzl32hk4mrs6njm4cnj84ifsf52ms5khy43m9bfmwwmadbilr"; depends=[ade4 ggplot2 ggrepel KernSmooth scatterplot3d xtable]; };
+  FactoClass = derive2 { name="FactoClass"; version="1.2.7"; sha256="0hvlr9cw6wfckl8rzl5qqyp0h8rv8gcnyj6x930jq7h44kj0ji7d"; depends=[ade4 ggplot2 ggrepel KernSmooth scatterplot3d xtable]; };
   FactoInvestigate = derive2 { name="FactoInvestigate"; version="1.3"; sha256="1924f5sfadgs47ja1ljwqm3slnmqqz1pwxhh9cn1rg1hi8g7db6f"; depends=[FactoMineR rmarkdown rrcov]; };
   FactoMineR = derive2 { name="FactoMineR"; version="1.41"; sha256="1h20hydav6l2b7bngqw1av4l5rrh0wk58nhailga1f4qw9lrv259"; depends=[car cluster ellipse flashClust lattice leaps MASS scatterplot3d]; };
   FactorsR = derive2 { name="FactorsR"; version="1.2"; sha256="0y6r5ch0h0sag1xinvnjr7q4495naygvi5iiqq9bc51ijv228c0m"; depends=[]; };
@@ -1203,12 +1256,11 @@ in with self; {
   FastRWeb = derive2 { name="FastRWeb"; version="1.1-1"; sha256="0xh3710kvnc60pz9rl5m3ym2cxf0mag9gi29y7j3fl4dh2k7zf74"; depends=[base64enc Cairo]; };
   FastSF = derive2 { name="FastSF"; version="0.1.1"; sha256="1xajav45h57hchzkvl2pb4mz9xy433lq74jnry0icid8dai5xhwb"; depends=[limSolve Rcpp RcppArmadillo]; };
   FatTailsR = derive2 { name="FatTailsR"; version="1.7-5"; sha256="1l2anaf4kixidmvya64ni5b78bl9w2n6xf1lnf297lkdka8gxigw"; depends=[minpack_lm timeSeries]; };
-  FateID = derive2 { name="FateID"; version="0.1.2"; sha256="1ky03qc6vc2q8v9inanm0bmybjjcx53izjfylszhmnlgph1fp6n8"; depends=[DESeq2 destiny lle locfit pheatmap princurve randomForest RColorBrewer rgl Rtsne som zoo]; };
+  FateID = derive2 { name="FateID"; version="0.1.4"; sha256="1v3zgxr8qydpkxzpbxn3spqy4xadf1h0wx3nk4ia9dkmxz6qq5hy"; depends=[lle locfit pheatmap princurve randomForest RColorBrewer rgl Rtsne som]; };
   FeaLect = derive2 { name="FeaLect"; version="1.14"; sha256="1h6jc8n57mvyz3gi2jdx5xacwv5iim5sx86qzrg3v1higfr54b1l"; depends=[lars rms]; };
   FeatureHashing = derive2 { name="FeatureHashing"; version="0.9.1.3"; sha256="0k8n3c0yiz6bb9rq6ra8z2hypb4hw4qcsdfbrgrw74kqivscs62i"; depends=[BH digest magrittr Matrix Rcpp]; };
-  FedData = derive2 { name="FedData"; version="2.5.4"; sha256="18j98l3bx8psd13nb47y7qrs58ds1i1pbib1d6q1178pf1k474i3"; depends=[curl data_table devtools dplyr foreach Hmisc httr igraph lubridate magrittr ncdf4 raster readr rgdal rgeos sf soilDB sp stringr]; };
+  FedData = derive2 { name="FedData"; version="2.5.5"; sha256="0krfz76mxw0dybm4adqf5mg53g8gpypp5sk2z99s7b54w196cmqh"; depends=[curl data_table devtools dplyr foreach Hmisc httr igraph lubridate magrittr ncdf4 raster readr rgdal rgeos sf soilDB sp stringr]; };
   FeedbackTS = derive2 { name="FeedbackTS"; version="1.4"; sha256="1mcsr48hvrpfnk2f0z1bc8556jf848bpd8prm3y46gqdj452wpmm"; depends=[geoR mapdata maps proj4 sp]; };
-  Fgmutils = derive2 { name="Fgmutils"; version="0.9.4"; sha256="0k5pafgrcb7smklgzgw2mf6npj55nm5fsr6k0xp6ji380rvdxc0y"; depends=[data_table devEMF ggplot2 gridExtra plyr png ReporteRs sqldf stringr]; };
   FieldSim = derive2 { name="FieldSim"; version="3.2.1"; sha256="1snz2wja3lsgxys0mdlrjjvk5575cyd64mjipafibwcs97bva5x1"; depends=[RColorBrewer rgl]; };
   FinAna = derive2 { name="FinAna"; version="0.1.2"; sha256="09svg5z52vv90ih85awgh6ns3pqi789qjm2wi1gb9hbg9v5g7pdv"; depends=[]; };
   FinAsym = derive2 { name="FinAsym"; version="1.0"; sha256="0v15ydz4sq9djwcdcfp90mk8l951rry7h91d7asgg53mddbxjj6f"; depends=[]; };
@@ -1218,16 +1270,16 @@ in with self; {
   FinancialMath = derive2 { name="FinancialMath"; version="0.1.1"; sha256="11nhphvd7bvbc7xfs85rib763r1mpvxmsj6hgzfib5aifib5k5js"; depends=[]; };
   FindAllRoots = derive2 { name="FindAllRoots"; version="1.0"; sha256="0n4wfm21qj5zn06jqnzxa0w9mfn18dqi6hk1jjqa56dxqw1k7vw0"; depends=[]; };
   FindIt = derive2 { name="FindIt"; version="1.1.4"; sha256="1rnkxngkqsmqs0d0m8ihscpsigxbjgl5ga5nyfwf97b1hrbv4j37"; depends=[arm ggplot2 glinternet glmnet igraph lars lmtest Matrix quadprog sandwich]; };
-  FinePop = derive2 { name="FinePop"; version="1.5.0"; sha256="0dis6nxdlgvznsv0817hnfc4nirv7vvzi0n1wd378zdn60j2fwbv"; depends=[]; };
+  FinePop = derive2 { name="FinePop"; version="1.5.1"; sha256="184707yvh2mydx42vxrdgv0n4v2dad4an7c4yvlyb9d7z6h0sw2x"; depends=[]; };
   FisHiCal = derive2 { name="FisHiCal"; version="1.1"; sha256="1dds629jlja3vw2l010n1334yh3z10nijqksr0q98ckd2yrwg2rf"; depends=[igraph Rcpp RcppArmadillo]; };
-  FishResp = derive2 { name="FishResp"; version="0.3.0"; sha256="1rn4vpg33q7x7j0srjndz3c16gzl97f31pvcqcnbnp1c687irb6l"; depends=[chron lattice mclust respirometry rMR]; };
+  FishResp = derive2 { name="FishResp"; version="1.0.2"; sha256="0ljibh3nchrlyq2bihaxacpqvw0simw6q4i9rv8lf04viyrbvi6y"; depends=[chron lattice mclust respirometry rMR]; };
+  FisherEM = derive2 { name="FisherEM"; version="1.5.1"; sha256="1s7gfdw840f51mn76jvcnwpwcf3dzf2w81wlyxqkij45sink92yz"; depends=[elasticnet MASS]; };
   FitAR = derive2 { name="FitAR"; version="1.94"; sha256="1mkk3kvfq4v0pdabnhbwrk31ji2mv2v6ns16xsvvr1qyg2fnx6hq"; depends=[bestglm lattice leaps ltsa]; };
   FitARMA = derive2 { name="FitARMA"; version="1.6"; sha256="1r9mqrqkm4wh3nd6v9wmpj23gw21i4p89p6z4c7639kn4f590ldk"; depends=[FitAR]; };
   FixSeqMTP = derive2 { name="FixSeqMTP"; version="0.1.2"; sha256="0v1cwq8gapgandm7wiw8p6av6qigydlpmwi6w02p1y7f0hf5ifnp"; depends=[]; };
   FixedPoint = derive2 { name="FixedPoint"; version="0.5"; sha256="1jnkbb52g3avs0pm37g5qn4m3ssn2qc6adr8xp5z7ahsbkffkyw2"; depends=[MASS]; };
   FlexDir = derive2 { name="FlexDir"; version="1.0"; sha256="1gb5alv9jsnw0135g63cy757pxhdw6cgwfm8dpcm8dj9zqg10dkm"; depends=[]; };
   FlexGAM = derive2 { name="FlexGAM"; version="0.7.0"; sha256="1pjlsi747j347vwn94391xr3aknnspgw7rc1jnin7g0n1fgkcww4"; depends=[MASS Matrix mgcv scam]; };
-  FlexParamCurve = derive2 { name="FlexParamCurve"; version="1.5-3"; sha256="0766ghwbdd7r4yj5xf31hnknn775ziw1hhrn13wf8bibyd8blz70"; depends=[nlme]; };
   FloodMapper = derive2 { name="FloodMapper"; version="1.0"; sha256="09pr6324namqrwdr2impgqmdmsf34g9pq91091cg9b1031djgzyq"; depends=[magick raster rgdal sp]; };
   FlowRegEnvCost = derive2 { name="FlowRegEnvCost"; version="0.1.1"; sha256="0lw4kv4z0s23jy11y53rxxh7zxa7vajxrcnjgxd74xxs64vjlj88"; depends=[zoo]; };
   FlowScreen = derive2 { name="FlowScreen"; version="1.2.5"; sha256="1kslqvxm73s8fvhf6ahmxmjgs73b78lcbcf4af1cp7axksp4bv8v"; depends=[changepoint evir zyp]; };
@@ -1235,14 +1287,16 @@ in with self; {
   ForIT = derive2 { name="ForIT"; version="1.0"; sha256="0mi2cw09mbc54s8qwcwxin2na1gfyi60cdssy2ncynma7alq3733"; depends=[]; };
   ForImp = derive2 { name="ForImp"; version="1.0.3"; sha256="0ai4i6q233sdsi8xilpbkxjqdf4pxw93clkdkhcxal6q43rnf7vd"; depends=[homals mvtnorm sampling]; };
   ForeCA = derive2 { name="ForeCA"; version="0.2.4"; sha256="1i19lmhl1kgfnd7zipjr6xp5ir9rvjy13sbq321jaf8ya60bjdd9"; depends=[ifultools MASS reshape2 sapa]; };
-  ForecastComb = derive2 { name="ForecastComb"; version="1.2"; sha256="1sx151a37aadvki3bvlya4g5mbd8ns9644n4mc6f6mhglikx5y2g"; depends=[forecast ggplot2 Matrix mtsdi psych quadprog quantreg]; };
+  ForecastComb = derive2 { name="ForecastComb"; version="1.3.1"; sha256="07cbiv172mpkwvg6svhwgavlfy2144ir3y1l7w37wbd0ygs514id"; depends=[forecast ggplot2 Matrix mtsdi psych quadprog quantreg]; };
   ForecastCombinations = derive2 { name="ForecastCombinations"; version="1.1"; sha256="07vzgm2jy992p1l9b8rsv2lbc8cbfzvql85n5ah4p4l3zjxdxgk9"; depends=[quadprog quantreg]; };
   ForecastFramework = derive2 { name="ForecastFramework"; version="0.9.0"; sha256="131h9f148wn89znzsnym43amlvf4s7jzg4f2p7ld9ns7727sf56q"; depends=[abind dplyr lubridate magrittr R6 reshape2]; };
   ForestTools = derive2 { name="ForestTools"; version="0.2.0"; sha256="0q9nk9n001bnz5hd8cxj6wmaf8c7g0kwfkpa0hk6ap42666rrrah"; depends=[APfun imager raster rgeos sp]; };
   FormalSeries = derive2 { name="FormalSeries"; version="1.0"; sha256="09m4ifinasww0xfprs29xsrqhxxkw9zffb3919xnkkjkwp0nax4v"; depends=[]; };
   Formula = derive2 { name="Formula"; version="1.2-3"; sha256="0wiqh8rr9d5ciy80wj8f5fnmiiw0ywanvvnhkwd622dx42dk848l"; depends=[]; };
   ForwardSearch = derive2 { name="ForwardSearch"; version="1.0"; sha256="0yd47832piqxzjxgl7bc8pn0c8f7vbgsm9z6894rzyi615kjl70b"; depends=[robustbase]; };
-  FourScores = derive2 { name="FourScores"; version="1.0"; sha256="0d21mrl9bzsvhljv7ymiyck508smp66w9qivrb2rp0p803h9yibm"; depends=[]; };
+  FossilSim = derive2 { name="FossilSim"; version="2.0.0"; sha256="1kv737bpq4vii2q32jljdiv3dlcvj05xkxkd5s0d5961ypgvm04d"; depends=[ape TreeSim]; };
+  FourScores = derive2 { name="FourScores"; version="1.5.1"; sha256="1la9d1hfcmi0zg58yl0a7nj36giagh0fwrc7wxyqdq0c7zf1hfzq"; depends=[]; };
+  FourgameteP = derive2 { name="FourgameteP"; version="0.1.0"; sha256="15yn47737768fkjjv8ykc9lw7x58pq44k90d9d4c9hp20zw5f3by"; depends=[]; };
   FrF2 = derive2 { name="FrF2"; version="1.7-2"; sha256="1qjgx7zbnabbs4zq7hn3j1i1xyy4yjwnz7pn25kz9s3szqr1fk66"; depends=[BsMD DoE_base igraph scatterplot3d sfsmisc]; };
   FrF2_catlg128 = derive2 { name="FrF2.catlg128"; version="1.2-1"; sha256="0i4m5zb9dazpvmnp8wh3k51bm0vykh4gncnhdg71mfk4hzrfpdac"; depends=[FrF2]; };
   FractalParameterEstimation = derive2 { name="FractalParameterEstimation"; version="1.1.1"; sha256="0l015v99hzmiyic0klvq71ljk9f8ipr57ki7x4cjyz1gam9f84p5"; depends=[]; };
@@ -1250,7 +1304,7 @@ in with self; {
   Frames2 = derive2 { name="Frames2"; version="0.2.1"; sha256="0xbz19v5r1h15p8mf94vacw04h3kvmm88ayy4b1aqxrd925n63mw"; depends=[MASS nnet sampling]; };
   FreeSortR = derive2 { name="FreeSortR"; version="1.3"; sha256="1m6ahhixbbizzn09pz71zvinrdshn3j6gmy05jdxa9d932agqk0w"; depends=[ellipse smacof vegan]; };
   FreqProf = derive2 { name="FreqProf"; version="0.0.1"; sha256="1yqn2435l2sghfcv5mma0rv9yqvpa69z8cqqsjlrlbih9gib82d4"; depends=[ggplot2 reshape2 shiny]; };
-  FunChisq = derive2 { name="FunChisq"; version="2.4.5-1"; sha256="10472bclx40ha5nz15csyk3j3kwdzfb22wx64zc1s16s903w9jhw"; depends=[BH Rcpp]; };
+  FunChisq = derive2 { name="FunChisq"; version="2.4.5-2"; sha256="1a5ladzpm62cap8gdz11kjlwyzkq84nx2xbnbjc36x2skzlqpcza"; depends=[BH Rcpp]; };
   FunCluster = derive2 { name="FunCluster"; version="1.09"; sha256="0i73asn1w4s6ydf2ddn5wpr0mwbbxzgmaly1pslarzkx71wk03fz"; depends=[cluster Hmisc]; };
   FuncMap = derive2 { name="FuncMap"; version="1.0.10"; sha256="0iaay6qz9a2s77xjfpp7wm37y7xwnvmlw6s5k5riccmqzc6dcjs7"; depends=[mvbutils]; };
   Funclustering = derive2 { name="Funclustering"; version="1.0.1"; sha256="0i6g98mfgdyc9hdzvviynrgqhkzicp8y6s0scqy3ifgk9h1k79dw"; depends=[fda Rcpp RcppEigen]; };
@@ -1279,15 +1333,15 @@ in with self; {
   GANPA = derive2 { name="GANPA"; version="1.0"; sha256="0ia8djv46jm397nxjrm9yc5gacf1r4z0ckiliz57cbrqwh7z2wpa"; depends=[GANPAdata]; };
   GANPAdata = derive2 { name="GANPAdata"; version="1.0"; sha256="0mhdadl7zgsacn59ym42magg3214k1xhabwn78fv7kgccszcgc86"; depends=[]; };
   GAR = derive2 { name="GAR"; version="1.1"; sha256="12xgk87bndinx7ibaasn51a9fad3ymvpjmixa7l18pfy99l3pcll"; depends=[httr jsonlite]; };
-  GAS = derive2 { name="GAS"; version="0.2.6"; sha256="18a3hagwfy0xa7abkwgf2pk5l2n0bxg4kr8y0m5iapkbc3gx5rvz"; depends=[MASS numDeriv Rcpp RcppArmadillo Rsolnp xts zoo]; };
+  GAS = derive2 { name="GAS"; version="0.2.9"; sha256="1h588g4khqhc0laxdqmzjz4zilb2gww9xkm0p7d59k9b70k7wbcx"; depends=[cubature MASS numDeriv Rcpp RcppArmadillo Rsolnp xts zoo]; };
   GAabbreviate = derive2 { name="GAabbreviate"; version="1.3"; sha256="0cq6bg3w0ji44rsz1p4j17fk0jg8rafbjixwi3fjdndc3yd874r5"; depends=[GA psych]; };
   GAparsimony = derive2 { name="GAparsimony"; version="0.9.2"; sha256="0c8al4kw1fd9krninpxijg99lhfmlw4mf2623md2and25r6ixlld"; depends=[foreach iterators]; };
   GB2 = derive2 { name="GB2"; version="2.1"; sha256="06rcck97pdm1rsb02cy0jd9fknv0mz5jwk364gsaahdk56ddk18a"; depends=[cubature hypergeo laeken numDeriv survey]; };
   GBJ = derive2 { name="GBJ"; version="0.5.2"; sha256="1zfddk1gn1hh67x9n5zrav5gmmrfdbnf29cz72kd3g64z2f78fgw"; depends=[BH mvtnorm Rcpp SKAT]; };
   GCAI_bias = derive2 { name="GCAI.bias"; version="1.0"; sha256="10092mwpmfbcga0n39a0i6g8xxch8xiwg15cckipw6yxjyx0sivc"; depends=[]; };
-  GCD = derive2 { name="GCD"; version="4.0.2"; sha256="1gb3qhqa212vy85qscnfssvb4rk8fq5j6zs779jq9c6jzvlfv6wb"; depends=[]; };
+  GCD = derive2 { name="GCD"; version="4.0.3"; sha256="0c1l1xz0jjjib5cqszq6rg3rh19441npjgy6xnvlrhddjyihhrs4"; depends=[]; };
   GCPM = derive2 { name="GCPM"; version="1.2.2"; sha256="0k2ng78bk3bxpj6nz80j5cvjd56zjz328ga68vyyc3hvdjgpspqj"; depends=[Rcpp RcppProgress]; };
-  GCalignR = derive2 { name="GCalignR"; version="1.0.1"; sha256="1p1zxf5s75ckyj7a61n43ix314p3b99knyg6z5d4sn5n417h2m42"; depends=[ggplot2 pbapply readr reshape2 stringr]; };
+  GCalignR = derive2 { name="GCalignR"; version="1.0.2"; sha256="1x0as6mmapvn3a28c3qk3wd5gjkx17xgf9c7yb68wp3lj8pknsnm"; depends=[ggplot2 pbapply readr reshape2 stringr]; };
   GD = derive2 { name="GD"; version="1.6"; sha256="1rlgr4z4ibz5m8m18mw11bqcbbvfjxw2mljg78jp0lb294zh1kbb"; depends=[BAMMtools ggplot2 reshape2]; };
   GDAdata = derive2 { name="GDAdata"; version="0.93"; sha256="13ks97i289rc4i7gpqrifwbj0m9rx8csjhnfg8mad10qmjwz7p8b"; depends=[]; };
   GDAtools = derive2 { name="GDAtools"; version="1.4"; sha256="1i5g7gzl3fkhwxqizqwrn8098s5lrr0mk17wmpyf92s1sy315cpv"; depends=[FactoMineR nleqslv nnet]; };
@@ -1295,7 +1349,8 @@ in with self; {
   GDINA = derive2 { name="GDINA"; version="2.1.15"; sha256="1cndib7frd40199l8zijspnidwig9jvhhk3s5dbbhlgxswq6idsz"; depends=[alabama ggplot2 MASS nloptr numDeriv Rcpp RcppArmadillo Rsolnp shiny shinydashboard]; };
   GEEaSPU = derive2 { name="GEEaSPU"; version="1.0.2"; sha256="02pwjqd94kranc1f69bx9rzk27kchavhvhl9fygjhrr40nwq3pbg"; depends=[gee Rcpp RcppArmadillo]; };
   GEEmediate = derive2 { name="GEEmediate"; version="1.1.1"; sha256="1akgl4j38x4qf3z9d6z7cgjd7x9f0k3lrzyrzgykqhrzmbh68z2m"; depends=[gee]; };
-  GENEAread = derive2 { name="GENEAread"; version="2.0.2"; sha256="0nkza3srfa67mmxnvhhq2wg3zm7ij73r7rpgssjaaijcxqm7qyvl"; depends=[bitops GGIR mmap]; };
+  GENEAclassify = derive2 { name="GENEAclassify"; version="1.4.14"; sha256="0z2lf0pgkwhrqq6a8gpjga3k3kf1iv8zkwma3g6kghqp1sjr9yr7"; depends=[changepoint GENEAread MASS rpart signal]; };
+  GENEAread = derive2 { name="GENEAread"; version="2.0.5"; sha256="0xm4cf0a5nfdj8qxb9ylzgk2dals9rwggk2w6aaryn8r8v4fl9vp"; depends=[bitops GGIR mmap]; };
   GENLIB = derive2 { name="GENLIB"; version="1.0.6"; sha256="0xyq3ggi814vi3x5kxffhi7ygvzcfj3pg0kfi7whcjpi3pjg05h8"; depends=[bootstrap doParallel foreach kinship2 lattice Matrix quadprog Rcpp]; };
   GEOmap = derive2 { name="GEOmap"; version="2.4-4"; sha256="0wk2v0fwcwcm59k711fg829h2w58wkd36im4mg974iai6mqif7qh"; depends=[fields MBA RPMG splancs]; };
   GERGM = derive2 { name="GERGM"; version="0.13.0"; sha256="1h3fzkgc553bvxhcmvmlgk9sdais186h4gs1qagdihwpwn8ymbjk"; depends=[BH coda ggplot2 igraph matrixcalc plyr Rcpp RcppArmadillo RcppParallel scales slackr stringr vegan]; };
@@ -1306,16 +1361,17 @@ in with self; {
   GEint = derive2 { name="GEint"; version="0.1.4"; sha256="0xwp8hqds4lf6nb8hcbvsj2000w7f90bi62b1v3iry0y6cbpwbjg"; depends=[bindata geepack mvtnorm nleqslv pracma rje speedglm]; };
   GExMap = derive2 { name="GExMap"; version="1.1.3"; sha256="1a6i2z9ndgia4v96nkr77cjqnbgxigqbqlibg82gwa0a6pl7r7nz"; depends=[Biobase multtest]; };
   GFA = derive2 { name="GFA"; version="1.0.3"; sha256="10sivsqxliwcrp0ay3n2my28zki6f8vpv8i9lbld8qinx1iv2mq3"; depends=[]; };
-  GFD = derive2 { name="GFD"; version="0.2.5"; sha256="14bhqk5hi9w2078nn382ksgw37bx5r1jadizcrwbisglccxa0ncd"; depends=[magic MASS Matrix plotrix plyr]; };
+  GFD = derive2 { name="GFD"; version="0.2.6"; sha256="1z98j6nvaa4vrh840q1iy5r0h9ns4xbrk3qfkq51l2kmbrck8r7a"; depends=[magic MASS Matrix plotrix plyr]; };
+  GFE = derive2 { name="GFE"; version="0.1.0"; sha256="0ywrg23z13kp8ggw4wbm4jvr2rvb6kra7ma0mgfj8xzkrxs6vi6m"; depends=[data_table dplyr TeachingSampling]; };
   GFGM_copula = derive2 { name="GFGM.copula"; version="1.0.3"; sha256="0pqx5fr039izhwi2kdzq9v6nlviyjclzddd092g8mkadj36diwk5"; depends=[cmprsk compound_Cox joint_Cox]; };
   GFORCE = derive2 { name="GFORCE"; version="0.1.2"; sha256="1bxc0id3vivva4d62h468vv4zrvjgzh91mlm97ga9qnlhd1r20wr"; depends=[lpSolve MASS]; };
   GGEBiplotGUI = derive2 { name="GGEBiplotGUI"; version="1.0-9"; sha256="0nd0ky3m1avy82z48g7hcysq0y0agxjxdn0g624dkm2w99avxw3j"; depends=[rgl tkrplot]; };
   GGEBiplots = derive2 { name="GGEBiplots"; version="0.1.1"; sha256="1xnxaylikjd378flw3rqw36z27b2limkmyad97zhf1cbva317d1b"; depends=[gge GGEBiplotGUI ggforce ggplot2 scales]; };
-  GGIR = derive2 { name="GGIR"; version="1.5-23"; sha256="06bz8zlw3b2m1lb884jcbh935wxjri8hsa25aw4x7h3n70sgza25"; depends=[data_table Rcpp]; };
+  GGIR = derive2 { name="GGIR"; version="1.6-7"; sha256="1kwrynyb0r6y9vdsdv1s75pg1v2q4lj10dvvwbdk4sy3m8z7dhsv"; depends=[data_table Rcpp]; };
   GGMM = derive2 { name="GGMM"; version="1.0.0"; sha256="18haggjagp0bwy451ghz18nbjgp8zdw1m9iavjj38s57igs611n4"; depends=[equSA huge mvtnorm]; };
   GGMridge = derive2 { name="GGMridge"; version="1.1"; sha256="0zbfvvp7l836m118m8nmdvw1w7xq6d3b7qirskjsq1dkk23j41hs"; depends=[MASS mvtnorm]; };
   GGMselect = derive2 { name="GGMselect"; version="0.1-12.1"; sha256="0nrkbai9jps54ldx3cvwd4x4wingfj73najwx4bv98z8zxpbnky5"; depends=[gtools lars mvtnorm]; };
-  GGUM = derive2 { name="GGUM"; version="0.3.2"; sha256="0kkdg8d4ib862v6y9xjczh4v52fzzcv5c31hdf44jw4lc7npwc82"; depends=[abind psych Rdpack viridis xlsx]; };
+  GGUM = derive2 { name="GGUM"; version="0.3.3"; sha256="1ndqm4wal2xp9sdhj0aj8828ygm2g4fx23cpnlmg3vjz4m2mjc1r"; depends=[abind psych Rdpack viridis xlsx]; };
   GGally = derive2 { name="GGally"; version="1.4.0"; sha256="1zjmcc5bzagvy7c5cmdcl39xmx07fwi98yrj4i05w7y40kqcsiws"; depends=[ggplot2 gtable plyr progress RColorBrewer reshape rlang]; };
   GHQp = derive2 { name="GHQp"; version="1.0"; sha256="0qpcpwv7rz67qhz1p5k2im02jvs7l8z9sa6ypz13hig5fzm8j9bp"; depends=[statmod]; };
   GHap = derive2 { name="GHap"; version="1.2.2"; sha256="1qwv4llcixklr9d6lq4ljzbs8al80xnvqkcajnh8dbf3axmlmr5b"; depends=[bigmemory lme4 Matrix]; };
@@ -1327,7 +1383,7 @@ in with self; {
   GLDreg = derive2 { name="GLDreg"; version="1.0.7"; sha256="1wjrr4x1k0fz8nx9idb4ysamldypriiypj96b5v028lx38jwsk3l"; depends=[ddst GLDEX]; };
   GLIDE = derive2 { name="GLIDE"; version="1.0.1"; sha256="02pmn0ydrmblgchz189avlrz3zaz0qfhy75d945yphpmvjf9f9m5"; depends=[doParallel foreach MASS]; };
   GLMMRR = derive2 { name="GLMMRR"; version="0.2.0"; sha256="0s3jfh720acfmbadilq2c6gql3yifsbijpmw1jkzbsdc87pqi1db"; depends=[lattice lme4]; };
-  GLMMadaptive = derive2 { name="GLMMadaptive"; version="0.2-0"; sha256="06ppv7clwqd817aas9dkq1ry8vz9rbss5rdgwzc65y715r0y906k"; depends=[MASS nlme]; };
+  GLMMadaptive = derive2 { name="GLMMadaptive"; version="0.3-0"; sha256="0447j35a5nq3v6fkcynmrxvxqlry51b6fx05dwrdncbnq3sm5f6j"; depends=[MASS nlme]; };
   GLMaSPU = derive2 { name="GLMaSPU"; version="1.0"; sha256="0zx2bza5v5cfp9v7hf42s57522b6prawcwl77aa3kvjcnb0ish6g"; depends=[MASS mnormt mvtnorm Rcpp RcppArmadillo]; };
   GLMsData = derive2 { name="GLMsData"; version="1.0.0"; sha256="12q41zxniblzys20vjrf5skj8cbzlwb92mwk6jvnyd86lc70bsh1"; depends=[]; };
   GLSME = derive2 { name="GLSME"; version="1.0.4"; sha256="1bh56dv4czl89dm9b6syfpsbds4wni03d5vamvjbp6wblhysxnpm"; depends=[corpcor mvtnorm]; };
@@ -1336,47 +1392,47 @@ in with self; {
   GMDH = derive2 { name="GMDH"; version="1.6"; sha256="093glyz73246m5f2xb2xgbgi80haj4fanmr325byr99dnf4x35yn"; depends=[MASS]; };
   GMDH2 = derive2 { name="GMDH2"; version="1.4"; sha256="13vbzqxmqvp39rbxw41nqfrmk0w6w8qc9nzgfbfpc07h3gcwva41"; depends=[e1071 glmnet magrittr MASS nnet plotly randomForest xtable]; };
   GMMBoost = derive2 { name="GMMBoost"; version="1.1.2"; sha256="01q165vkdiv4qh96lha0g2g94jpnzdclbby6q43ghh9j1yrd4qzj"; depends=[magic minqa]; };
-  GMSE = derive2 { name="GMSE"; version="0.4.0.4"; sha256="14m4rygb24k4prkiqsqv3w5v0gv98pqpqdmgimk5wi33npxy2c2b"; depends=[shiny shinydashboard shinyjs]; };
-  GNE = derive2 { name="GNE"; version="0.99-1"; sha256="1avsl54xdlqq8pw16g84igcwms7if7lvdblqvfc2cn3sk8qi5xdv"; depends=[alabama BB nleqslv SQUAREM]; };
+  GMSE = derive2 { name="GMSE"; version="0.4.0.7"; sha256="00fws183mndi2zdfkcsdki3nbd983y9g35fgxkacjck9mpn48an3"; depends=[shiny shinydashboard shinyjs]; };
+  GNAR = derive2 { name="GNAR"; version="0.2.7"; sha256="1rxx13a3yzl8g4024d3vwxf86ssjjsa3dh6bqzxqyv0fxd85aiaj"; depends=[igraph]; };
+  GNE = derive2 { name="GNE"; version="0.99-2"; sha256="16mivsa4r8d2cg5qsh5rpg2244f74zk2ln3vbys7ivjgnjpjn7z8"; depends=[alabama BB nleqslv SQUAREM]; };
   GOGANPA = derive2 { name="GOGANPA"; version="1.0"; sha256="1xbir21zvr5hv2y6nndzpsrpmnr7glrc7y6xgcyb856wx46ajan9"; depends=[GANPA WGCNA]; };
   GORCure = derive2 { name="GORCure"; version="2.0"; sha256="1hazin0q74hf16azxa5h08kfj7g1079q77n2fn4fahpfxb8hmvwm"; depends=[ICsurv MASS pracma survival]; };
   GOplot = derive2 { name="GOplot"; version="1.0.2"; sha256="1y8dv0kbzpr9za91njw0x233vx5d13vqml9hmpddcyi9s6va5nix"; depends=[ggdendro ggplot2 gridExtra RColorBrewer]; };
   GPArotation = derive2 { name="GPArotation"; version="2014.11-1"; sha256="15jh5qqqwx47ara6glilzha87rnih0hs5fsz0jjqwv6wr1gw26rm"; depends=[]; };
   GPB = derive2 { name="GPB"; version="1.0"; sha256="18cdgz00j0j1rchzn2l253rii3b0iv9ipnh5sk3yvmwrqiabmrf8"; depends=[]; };
-  GPCMlasso = derive2 { name="GPCMlasso"; version="0.1-1"; sha256="1qlbs9xxdn7q90afh5zc6fgp213fxyh3xmmhz5dm6azbwx92x3la"; depends=[car caret cubature ltm mirt mvtnorm Rcpp RcppArmadillo statmod TeachingDemos wordcloud]; };
+  GPCMlasso = derive2 { name="GPCMlasso"; version="0.1-2"; sha256="03xa68aydlgah7y922k9i07qwwz0ygzidrc3xl0iylcwbwcanifd"; depends=[caret cubature ltm mirt mvtnorm Rcpp RcppArmadillo statmod TeachingDemos]; };
   GPCSIV = derive2 { name="GPCSIV"; version="0.1.0"; sha256="118l792mwd54xsi3g8afg3vc6wds8j6fyaz3mwmq04mlcyblym4l"; depends=[scatterplot3d sqldf]; };
   GPFDA = derive2 { name="GPFDA"; version="2.2"; sha256="1xqk03g8b8hi1vdqh6a9wml8ln0ad6lmy14z8k8c4wdc5kbzdr0b"; depends=[fda fda_usc MASS spam]; };
   GPGame = derive2 { name="GPGame"; version="1.1.0"; sha256="00qiqd7p84k22wbmlmj8a81fy5m5rl6afhj2q61j0akicnbzjfw9"; depends=[DiceDesign DiceKriging GPareto KrigInv MASS mnormt mvtnorm Rcpp]; };
   GPLTR = derive2 { name="GPLTR"; version="1.2"; sha256="0b4s090jlp2qpqqr0b1ifwyf2fal156y7vg9mjkw53y623ms5pix"; depends=[rpart]; };
-  GPM = derive2 { name="GPM"; version="1.0.1"; sha256="0sqr2s9wcqh2giyslvkgprn22b4aigalx2dd9y57lz7kfljvril7"; depends=[lattice lhs randtoolbox]; };
-  GPPFourier = derive2 { name="GPPFourier"; version="2.1"; sha256="1wlzpiqlg5zx3rv29l1ql3apcaykvk72zc0anwxr152qlk910l2q"; depends=[mFilter Tides]; };
+  GPM = derive2 { name="GPM"; version="1.0.2"; sha256="0b7431fapg09xad8rc3b9vwrs55ja24yv12kfxb2y65gij940ms7"; depends=[lattice lhs randtoolbox]; };
+  GPRMortality = derive2 { name="GPRMortality"; version="0.1.0"; sha256="0k5pfyl7r5vsac927aqx19lz93vyk5l3ydqkazn2hwwaw1lh2wav"; depends=[rstan]; };
   GPareto = derive2 { name="GPareto"; version="1.1.1"; sha256="100r7v7vdkd8i8asb8fnz86rgmkd9kd5bnrc7kdzndfg6jsyycrg"; depends=[DiceDesign DiceKriging emoa KrigInv ks MASS pbivnorm pso randtoolbox Rcpp rgenoud rgl]; };
   GPfit = derive2 { name="GPfit"; version="1.0-0"; sha256="0g0g343ncqsqh88qq9qrf4xv5n3sa980kqbvklcx534dmn6a7n2i"; depends=[lattice lhs]; };
-  GPoM = derive2 { name="GPoM"; version="1.1"; sha256="0n1fnmwiygispihqgcx762wkvp28pnm8kcwlx9vxhpafswsp112q"; depends=[deSolve rgl]; };
-  GPrank = derive2 { name="GPrank"; version="0.1.3"; sha256="118v08kyp0s8j24cmfyyzj8klgd4g3jqi1x5l76w1iznnlpyd6kf"; depends=[gptk matrixStats RColorBrewer tigreBrowserWriter]; };
+  GPoM = derive2 { name="GPoM"; version="1.2"; sha256="1hhwdpish8j3j9y5q6r5pdsl1kpbwp1hjhcq24iiz4lfssib4k9f"; depends=[deSolve rgl]; };
+  GPrank = derive2 { name="GPrank"; version="0.1.4"; sha256="06j5fk427jkp5lphqlx48vfp4fagnxxnv4iyjcha8nvkswcblwgy"; depends=[gptk matrixStats RColorBrewer tigreBrowserWriter]; };
   GPvam = derive2 { name="GPvam"; version="3.0-5"; sha256="0inhhx5ll4ybkwp71ijigxlyxsa0rdyxb38kgfgxb588dsk4scjz"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; };
   GRANBase = derive2 { name="GRANBase"; version="2.5.0"; sha256="1sc7f47dnrwww89v4n8y41zvc9z8i8lv7qgya6nwf98vh9b6ifmi"; depends=[covr dplyr GRANCore htmlTable jsonlite markdown RCurl sendmailR stringi switchr]; };
   GRANCore = derive2 { name="GRANCore"; version="0.2.2"; sha256="0f4w5nyqnfq20apqrc7harg4capxrr648wfbgghdg18j3gh3spdc"; depends=[switchr]; };
   GRAPE = derive2 { name="GRAPE"; version="0.1.0"; sha256="0kcyz8x6yzq83hcwdlx7yw5jpww819f9d1hax19vn31ccq71xkyw"; depends=[]; };
   GRCdata = derive2 { name="GRCdata"; version="1.0"; sha256="0nshii6kfvffncgcrmm7wvniq94j9djj84jikcb6ck49viikkrky"; depends=[cubature nloptr]; };
-  GREP2 = derive2 { name="GREP2"; version="1.0.0"; sha256="1nzy8v4xjvaw5zsmbfxljfmy78njd3mw7rkgh6k6c0mf30mrb51i"; depends=[AnnotationDbi Biobase EnsDb_Hsapiens_v86 EnsDb_Mmusculus_v79 EnsDb_Rnorvegicus_v79 GenomicFeatures GEOquery org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db RCurl rentrez tximport XML]; };
-  GROAN = derive2 { name="GROAN"; version="1.1.0"; sha256="06xcbdcg3rmb9939d9ansy75jn0axy0c36rmgjhcji8gf959kmyz"; depends=[plyr rrBLUP]; };
+  GREP2 = derive2 { name="GREP2"; version="1.0.1"; sha256="0sr7r6c4xnhwdq4j1v3frzc063hhghinx8dl952li5cy8rqk8ga5"; depends=[AnnotationDbi Biobase EnsDb_Hsapiens_v86 EnsDb_Mmusculus_v79 EnsDb_Rnorvegicus_v79 GenomicFeatures GEOquery org_Hs_eg_db org_Mm_eg_db org_Rn_eg_db RCurl rentrez tximport XML]; };
+  GROAN = derive2 { name="GROAN"; version="1.2.0"; sha256="14n3k1wwz5pn82wcj00cdns4bp699f58k1nj8hp8jn0q7xr2sgv5"; depends=[plyr rrBLUP]; };
   GRS_test = derive2 { name="GRS.test"; version="1.1"; sha256="1ap9453rj5zan6c3ix7jb1qxhxh42bfv295dgqbgjpdygjdlbm6n"; depends=[]; };
   GRTo = derive2 { name="GRTo"; version="1.3"; sha256="1xkcx2agvrpfnmplgaqx70vz303v8rhwnxdyr4hmdlf4h92lbv8i"; depends=[bootstrap]; };
   GSA = derive2 { name="GSA"; version="1.03"; sha256="1h1sbpn1rrdh44w4fx2avc7x24ba40mvpd8b2x5wfrc7a294zf6z"; depends=[]; };
   GSAQ = derive2 { name="GSAQ"; version="1.0"; sha256="1p1rab2dlh4h9bfg464nhx708p7kc4q01ifccdh5756lq1qh2kzv"; depends=[]; };
   GSAfisherCombined = derive2 { name="GSAfisherCombined"; version="1.0"; sha256="1xhq5nc3kbz3ml9qkdxm6m0c65fybabfhgqlwii2105jl0ll7qy5"; depends=[]; };
   GSAgm = derive2 { name="GSAgm"; version="1.0"; sha256="18bhk67rpss6gg1ncaj0nrz0wbfxv7kvy1cxria083vi60z0vwbb"; depends=[edgeR survival]; };
-  GSCAD = derive2 { name="GSCAD"; version="0.1.0"; sha256="0a5smd1prfi6n58ghhz5v81p88v3cnmk2v6r0nn9gy7sa1r2z8xc"; depends=[fields Matrix Rcpp RcppArmadillo]; };
   GSE = derive2 { name="GSE"; version="4.1"; sha256="00pvpramk7n3195i3vkmp982igyc1b0xzjqs7xdsvzsnfv7kpcbh"; depends=[cellWise ggplot2 MASS Rcpp RcppArmadillo robustbase rrcov]; };
-  GSED = derive2 { name="GSED"; version="1.7"; sha256="1w8kim7qfrx28bx4l4qkfghwysmyhm7xa0pjagvrh5ar35m4ga67"; depends=[memoise rootSolve survival]; };
+  GSED = derive2 { name="GSED"; version="1.10"; sha256="1i3xrf01620m7vwa9kpzl620kxh60yhsbxyshna4kkv6d68i9fzy"; depends=[memoise rootSolve survival]; };
   GSIF = derive2 { name="GSIF"; version="0.5-4"; sha256="1vh3dffi5hakk32rwaabw9k34wigd0n5bhzcyqhadl6fxjsaz6b6"; depends=[aqp dismo gstat plotKML plyr raster rgdal RSAGA scales sp]; };
   GSM = derive2 { name="GSM"; version="1.3.2"; sha256="04xjs9w4gaszwzxmsr7657ry2ywa9pvpwpczpvinxi8vpj347jbb"; depends=[gtools]; };
   GSMX = derive2 { name="GSMX"; version="1.3"; sha256="1n1d7rixj14ari46snsmi48qfmy00ihmzvayk3hkrp2d2d0xi2gh"; depends=[MASS]; };
-  GSODR = derive2 { name="GSODR"; version="1.2.1"; sha256="0nmr5pmwxmriaf16r39hs85g2qfzz3k176klgvlmp4shg4ln2p64"; depends=[curl dplyr magrittr purrr R_utils readr rlang tibble]; };
+  GSODR = derive2 { name="GSODR"; version="1.2.3"; sha256="12fa4grgar7b8pxr1jjqrjbzmil0dwn04mq5dawj86v6g65xnky9"; depends=[curl dplyr magrittr purrr R_utils readr rlang tibble]; };
   GSSE = derive2 { name="GSSE"; version="0.1"; sha256="034mmxa6kjq5kgikhb5q75viagz5ck9irrjbxm26zq9099qxm13b"; depends=[Iso zoo]; };
   GSparO = derive2 { name="GSparO"; version="1.0"; sha256="0xna2crxqwy8fj0s79rxbdcaz9x912rp1vdwqv1557fsnmfv2yf0"; depends=[ggplot2 ThreeWay]; };
-  GUIDE = derive2 { name="GUIDE"; version="1.2.3.1"; sha256="02chn2mzh6smmiv8rp00cq5rff18bqszazbk8svmvvlgn0a25pj4"; depends=[rpanel tkrplot]; };
+  GUIDE = derive2 { name="GUIDE"; version="1.2.7"; sha256="0klaczmn3jnlzyh45yaqlc897irjfk467f4w03awmflaiwan3h6v"; depends=[rpanel tkrplot]; };
   GUILDS = derive2 { name="GUILDS"; version="1.3"; sha256="0zl6x0vn93ybps63fqazvd93f2zwdq0rqqrp7d6n5rnamx99mm8d"; depends=[pracma Rcpp]; };
   GUIProfiler = derive2 { name="GUIProfiler"; version="2.0.1"; sha256="10m4d7f2rhw6cmkrnw3jh4iqlkfphf4v7mpfwzw17laq0ncmsx5r"; depends=[graph MASS Nozzle_R1 proftools Rgraphviz rstudioapi]; };
   GUIgems = derive2 { name="GUIgems"; version="0.1"; sha256="0lmx8hw0496vk437p32l933cdb4vpi94f4kz58x20jj07c20maz6"; depends=[ggplot2 igraph MASS msm plyr rpanel stringr]; };
@@ -1384,12 +1440,12 @@ in with self; {
   GUniFrac = derive2 { name="GUniFrac"; version="1.1"; sha256="1vgij7c9b0afl5wzwcn0pjdvn8gqz2jxk5q0gchd9zk1qd10a1vl"; depends=[ape matrixStats vegan]; };
   GWAF = derive2 { name="GWAF"; version="2.2"; sha256="11lk1dy24y1d0biihy2aypdvlx569lw1pfjs51m54rhgpwzkw6yd"; depends=[coxme geepack lme4]; };
   GWASExactHW = derive2 { name="GWASExactHW"; version="1.01"; sha256="19qmk8h7kxmn9kzw0x4xns5p3qqz27xkqq4q6zmh4jzizd0fsl78"; depends=[]; };
-  GWASinlps = derive2 { name="GWASinlps"; version="1.1"; sha256="1041yb5zn27a9srylmawj2kbkcsjz65x0apa413wyb32pz73l6ni"; depends=[horseshoe mombf]; };
+  GWASinlps = derive2 { name="GWASinlps"; version="1.2"; sha256="036lv8f58kz6qdwaviyk1q1qsgcj9cimipq1cjrfpn8snkn7s1gh"; depends=[horseshoe mombf speedglm]; };
   GWG = derive2 { name="GWG"; version="1.0"; sha256="1va0cd229dhhi1lmrkpwapcm96hrdmxilrmba02xnl7ikhisw0my"; depends=[]; };
   GWLelast = derive2 { name="GWLelast"; version="1.2.1"; sha256="1g6xmw93jl9cv3c7p76wk3lq8qhqxgjhmn1cgiyyy5jbf14gbasv"; depends=[doParallel foreach geosphere glmnet sp spgwr]; };
   GWRM = derive2 { name="GWRM"; version="2.1.0.3"; sha256="16ahlf1pbcpgha50a7ml2c336by50r287kihwshiazshifi5p3n3"; depends=[doParallel foreach]; };
   GWSDAT = derive2 { name="GWSDAT"; version="3.0.1"; sha256="1v93fbbpmbcigi1m9vyzrgcbnrrpgh7h963vicwy9ilzc06vhm68"; depends=[deldir digest geometry Kendall lattice MASS Matrix officer readxl rhandsontable sf shiny shinycssloaders shinydashboard shinyjs sm sp splancs zoo]; };
-  GWmodel = derive2 { name="GWmodel"; version="2.0-5"; sha256="1v0a2fxs1nfm84vrggj1zmbij6kqzc5mgmqlvrh80hj3w87zpiry"; depends=[maptools Rcpp RcppArmadillo robustbase sp spdep]; };
+  GWmodel = derive2 { name="GWmodel"; version="2.0-6"; sha256="04im9va0imj8wsl5fzjw7jx7xxvwdr71wqj2m5ar2x3c1k91k2na"; depends=[maptools Rcpp RcppArmadillo robustbase sp spacetime spdep]; };
   GWsignif = derive2 { name="GWsignif"; version="1.2"; sha256="0bss5s3ijnlckz44p7jj49bn2r8nwqckpzwzcv0vci915q8jfsj2"; depends=[]; };
   GaDiFPT = derive2 { name="GaDiFPT"; version="1.0"; sha256="15fnj1w30h0zdj032f3js0bbb1qlyk4b54a4aclykwzicqdgalkg"; depends=[]; };
   GameTheory = derive2 { name="GameTheory"; version="2.7"; sha256="0vb7sjia5s58gw9zpkzddps8knxvbrz7fbi3m6digl8bf5vwhxxw"; depends=[combinat gtools ineq kappalab lpSolveAPI]; };
@@ -1398,7 +1454,7 @@ in with self; {
   GauPro = derive2 { name="GauPro"; version="0.2.2"; sha256="127agnhqbbavcf7sx0zq1c8ldh3w1d1iz5bpd1ixxkyaapmiq4qy"; depends=[lbfgs R6 Rcpp RcppArmadillo]; };
   GeDS = derive2 { name="GeDS"; version="0.1.3"; sha256="1ddq4hnyl3m3s4cchccxiqphi742ljcm86zqpa01a5nrjbnr87x6"; depends=[Matrix Rcpp Rmpfr]; };
   GeNetIt = derive2 { name="GeNetIt"; version="0.1-1"; sha256="1xjz22m4yn642m0bqa33w4m2rygpxjwg43c54lw168jck9zzgv1f"; depends=[nlme raster rgeos sp spatialEco spdep]; };
-  GenAlgo = derive2 { name="GenAlgo"; version="2.1.4"; sha256="1mgdvzc5dd7d1wlk8c7d8gd9b2di16mjmyd2i3am05jfw3q26ahv"; depends=[ClassDiscovery MASS oompaBase]; };
+  GenAlgo = derive2 { name="GenAlgo"; version="2.1.5"; sha256="0d3y9kc2njsbzdngv67d4qrdsnn7nsxph5acc09vmwxpv1cyhxiw"; depends=[ClassDiscovery MASS oompaBase]; };
   GenBinomApps = derive2 { name="GenBinomApps"; version="1.0-2"; sha256="1ps1rq8cjlwh658mysdh3xbn5fihanzcwxb38xvg4031vnwv80in"; depends=[]; };
   GenForImp = derive2 { name="GenForImp"; version="1.0"; sha256="1wcvi52fclcm6kknbjh4r9bpkc2rg8nk6cddnf5j8zqbvrwf4k5x"; depends=[mvtnorm sn]; };
   GenKern = derive2 { name="GenKern"; version="1.2-60"; sha256="12qmd9ydizl7h178ndn25i4xscjnrssl5k7bifwv94m0wrgj4x6c"; depends=[KernSmooth]; };
@@ -1416,6 +1472,7 @@ in with self; {
   GeneticSubsetter = derive2 { name="GeneticSubsetter"; version="0.8"; sha256="0bd4snv3dwabc7mknmd2rjmffj67xq535x0bycajhd83d1jhjars"; depends=[]; };
   GenomicMating = derive2 { name="GenomicMating"; version="2.0"; sha256="02v1pkarmardf7g8hf2n4jj4cq4707g5lcc7gnwsiyyh7pknd1y6"; depends=[dplyr emoa kohonen LowRankQP magrittr plotly qtl Rcpp RcppArmadillo scatterplot3d SOMbrero]; };
   GenomicTools = derive2 { name="GenomicTools"; version="0.2.6"; sha256="19illcfcm34vr90kh4cbdwf7k8hy700dlzylsaicv3h4xi7iydgs"; depends=[circlize data_table gMWT Rcpp RcppArmadillo snpStats stringr]; };
+  GenomicTools_fileHandler = derive2 { name="GenomicTools.fileHandler"; version="0.1.2"; sha256="1snv2z95v7lyvzpssjsjpy4163k6imfjbb0svm8icsb85mpyj7af"; depends=[data_table snpStats]; };
   GeoBoxplot = derive2 { name="GeoBoxplot"; version="1.0"; sha256="164dh49ac3fx38fdglv32lmz92ca8jdd98cbhz6mxsk8r0jcladw"; depends=[]; };
   GeoDE = derive2 { name="GeoDE"; version="1.0"; sha256="0wawkzj0344pprm8g884d7by8v74iw96b109rgm7anal48fl30im"; depends=[MASS Matrix]; };
   GeoGenetix = derive2 { name="GeoGenetix"; version="0.0.2"; sha256="0rrc8rdf6whpd830s2g9ybz82jcd0il9kkfrjh3xza3b86fasdvg"; depends=[RandomFields]; };
@@ -1424,24 +1481,26 @@ in with self; {
   GeoRange = derive2 { name="GeoRange"; version="0.1.0"; sha256="0krj9570wkhdvpaqkq3nf0maglqd44mpwn4v1bymvgpk1i1wf5p3"; depends=[moments proj4 raster sp velociraptr]; };
   GeomComb = derive2 { name="GeomComb"; version="1.0"; sha256="05xb6m2ciszxd13yhqdkildh9nsq19ss8885ngj6ynvbchqkii7r"; depends=[forecast ForecastCombinations ggplot2 Matrix mtsdi psych]; };
   GerminaR = derive2 { name="GerminaR"; version="1.2"; sha256="10x22xl3r93i5mc6w7m5mqm3z386dsffwrb8h9c1bznrnynnsy63"; depends=[agricolae assertthat dplyr DT ggplot2 gsheet gtools magrittr readxl shiny shinydashboard tibble tidyr]; };
-  GetDFPData = derive2 { name="GetDFPData"; version="0.7"; sha256="0c8cdx0hgcnrsppmq7vk70ivhczlb4blqfghqb9rni295r3hzd47"; depends=[curl dplyr readr reshape2 stringr tibble xlsx XML]; };
-  GetHFData = derive2 { name="GetHFData"; version="1.5"; sha256="1lm2k37y86fn45hhvyswj60dql0m33kia0wirs3zc981s4nsxp0i"; depends=[curl dplyr lubridate RCurl readr stringr]; };
+  GetDFPData = derive2 { name="GetDFPData"; version="1.2"; sha256="1v87xln890rvgklylziarqp3d4qwkppa9m54v2n9a6cbrfs4v3v9"; depends=[curl dplyr readr reshape2 stringr tibble xlsx XML]; };
+  GetHFData = derive2 { name="GetHFData"; version="1.6"; sha256="1yhj97ag817jd2qzfbk363vmy4qpv1p6343krm3z0c9wjp2i97n5"; depends=[curl dplyr lubridate RCurl readr stringr]; };
   GetITRData = derive2 { name="GetITRData"; version="0.7"; sha256="0cmqbncd5bjxgb1r9yvdv2hkx4qdmnpn2a62bgndnaya1yk5050l"; depends=[curl dplyr readr reshape2 stringr tibble xlsx XML]; };
-  GetLattesData = derive2 { name="GetLattesData"; version="0.9"; sha256="1rqhs8039m3ar76nail7gavw6678zs20r9dg98rp5igqx5jjys73"; depends=[curl dplyr readr stringdist stringr XML]; };
+  GetLattesData = derive2 { name="GetLattesData"; version="1.2"; sha256="0mwbyb3wk2l4nrzx4n6gbx4h4a1fz7p8kmysbihysdlz8brnr0av"; depends=[curl dplyr readr stringdist stringr XML]; };
   GetR = derive2 { name="GetR"; version="0.1"; sha256="1b2wirhz4nhvmf863czwb8z8b42ilsyjjrg9rc4nd9b7nz50bmjg"; depends=[party]; };
   GetTDData = derive2 { name="GetTDData"; version="1.3.1"; sha256="1a8f22nxs85g2zznh1ma37lmycypg8f7d5kdhyb5vrirvrpi5p05"; depends=[bizdays curl RCurl readxl stringi stringr tidyr XML]; };
   GetoptLong = derive2 { name="GetoptLong"; version="0.1.7"; sha256="1fl3w2n602ldybc5qj7qw4xmzzb804bsjkqwf6dswzj0vf0qiadr"; depends=[GlobalOptions rjson]; };
   GiNA = derive2 { name="GiNA"; version="1.0.1"; sha256="0his7wsgnggyv9526blxzxa1ni8hwq2ws64wkmha45nvvnm3dsiw"; depends=[doParallel EBImage foreach png]; };
   GiRaF = derive2 { name="GiRaF"; version="1.0"; sha256="02356cq0g6v5m72fy5z83bw3nsb7kpc9sy7sykk97735n928z92n"; depends=[BH Rcpp RcppArmadillo]; };
   GibbsACOV = derive2 { name="GibbsACOV"; version="1.1"; sha256="1ikcdsf72sn1zgk527zmxw3zjhx0yvkal6dv001cgkv202842kll"; depends=[MASS]; };
+  Gifi = derive2 { name="Gifi"; version="0.3-8"; sha256="04kprdfh74gyc5p8x6ycgv2m6gm47imhf3v4vlxgqj3lmjm2vxp0"; depends=[colorspace]; };
   GillespieSSA = derive2 { name="GillespieSSA"; version="0.5-4"; sha256="0bs16g8vm9yrv74g94lj8fdfmf1rjj0f04lcnaya7gyak3jhk36q"; depends=[]; };
   GiniWegNeg = derive2 { name="GiniWegNeg"; version="1.0.1"; sha256="1wqwjalsyp55si839cil6na3khigm0mwn6qkg0kjylq10pabfk2a"; depends=[]; };
   Giza = derive2 { name="Giza"; version="1.0"; sha256="13nkm8mk1v7s85kmp6psvnr1v97vi0gid8rsqyq3x6046pyl5z6v"; depends=[lattice reshape]; };
   GlobalDeviance = derive2 { name="GlobalDeviance"; version="0.4"; sha256="0s318arq2kmn8fh0rd5hd1h9wmadr9q8yw8ramsjzvdc41bxqq1a"; depends=[snowfall]; };
   GlobalFit = derive2 { name="GlobalFit"; version="1.2"; sha256="01s51nxcsl8xxn6khbv5jsvpwblwf0iamvr477a1rraqqqj94zx0"; depends=[sybil]; };
   GlobalOptions = derive2 { name="GlobalOptions"; version="0.1.0"; sha256="1wlyqz1yhmhjwslrd7q69jbd9vsbjkjfc01g60kl3cdpyr8hlyjn"; depends=[]; };
+  GmAMisc = derive2 { name="GmAMisc"; version="1.0.0"; sha256="14rs13y509hijg4ars3j55fm0133487alm8b9jlffbz8qiln48g4"; depends=[caTools classInt cluster coin corrplot DescTools dismo ggplot2 ggrepel gridExtra Hmisc InPosition kimisc lsr maptools plyr pROC raster RcmdrMisc rgdal rgeos rworldmap shape sp spatialEco spatstat]; };
   Gmedian = derive2 { name="Gmedian"; version="1.2.4"; sha256="0lr1hwprqy9mq5qyp83qqxj8dh5sy487xkqbv2y1qdinzj62pvcn"; depends=[Rcpp RcppArmadillo robustbase RSpectra]; };
-  Gmisc = derive2 { name="Gmisc"; version="1.6.2"; sha256="15ax691xk14y7qxnr1d0qbzb7y3ikv0x4qgsn4ss9z6b0hqclc84"; depends=[abind checkmate forestplot Hmisc htmlTable knitr lattice magrittr Rcpp rmarkdown XML]; };
+  Gmisc = derive2 { name="Gmisc"; version="1.6.4"; sha256="1hqpxrff0nhbgin8x69ip3lnsj13g3alm4y8l2hv0rnxibxd4x4z"; depends=[abind checkmate forestplot Hmisc htmlTable knitr lattice magrittr Rcpp rmarkdown XML]; };
   GoFKernel = derive2 { name="GoFKernel"; version="2.1-1"; sha256="0xygsdmggl35fafyp431mkwalwixw2r3f32qll1pf72dfwd8y8d3"; depends=[KernSmooth]; };
   GofKmt = derive2 { name="GofKmt"; version="2.0"; sha256="0018ljzlj7nkf12g0sqa8iyq3j2bnj9la3fwblx9lbdn8nxgllhn"; depends=[Rsolnp]; };
   GoodmanKruskal = derive2 { name="GoodmanKruskal"; version="0.0.2"; sha256="1qwarachkhc2yvjyxfcfbgjc1x9ni5xb7f93zviv8mz3c35bhs3b"; depends=[classInt corrplot]; };
@@ -1454,11 +1513,14 @@ in with self; {
   GrapheR = derive2 { name="GrapheR"; version="1.9-86"; sha256="1iizknyrpgiz1fh1fjls58n5v5fpki25j7kfbwfkp5ijf1q54ml6"; depends=[]; };
   GrassmannOptim = derive2 { name="GrassmannOptim"; version="2.0"; sha256="05r5zg4kf3xd6pp56bl8ldchdxvspxkdfd33b623hndjhn4lj2lq"; depends=[Matrix]; };
   GreedyEPL = derive2 { name="GreedyEPL"; version="1.0"; sha256="19b8fwxsjd6shwjxhpawa8pmlj6yn0j4577g6b93xbcs76wgrvd1"; depends=[Rcpp RcppArmadillo]; };
+  GreedyExperimentalDesign = derive2 { name="GreedyExperimentalDesign"; version="1.2"; sha256="1x3hnyqq75krlygg82qm0ldd8nsv071nzgr63zkjmifc7hgi0nvb"; depends=[GreedyExperimentalDesignJARs rJava]; };
+  GreedyExperimentalDesignJARs = derive2 { name="GreedyExperimentalDesignJARs"; version="1.0"; sha256="14i6m5qlh1fca9xmzid01hicd3bkf6rzl139ss78gvw544zrapw7"; depends=[rJava]; };
   GreedySBTM = derive2 { name="GreedySBTM"; version="1.0"; sha256="1r29cd8nxpyc82rz2xb9mk9wc17gcdlcl9lw1j3y4npr2z0qhf13"; depends=[Rcpp RcppArmadillo]; };
   Greg = derive2 { name="Greg"; version="1.2.2"; sha256="0drp9qf7yid88vcd2q2qdw23l1jynircffqnylznz8xzyh4qv7ik"; depends=[Epi forestplot Gmisc Hmisc htmlTable knitr magrittr nlme rms sandwich stringr]; };
   Grid2Polygons = derive2 { name="Grid2Polygons"; version="0.2.1"; sha256="0db5kv0rbsg077h2badw28x9363ymqkr52sw5wlg9x1bk9cczhi7"; depends=[inlmisc raster rgeos sp]; };
   GriegSmith = derive2 { name="GriegSmith"; version="1.0"; sha256="1a7gnaig1wvxpph7d8c37kx51dznzk0457fzf7alw95iwpyb4z7j"; depends=[spatstat]; };
   GrimR = derive2 { name="GrimR"; version="0.5"; sha256="005ywc31yn1cs54kjlkrryw0s7zm8dqqfjkdlkm4s1sbc9r3mssz"; depends=[car]; };
+  GroupComparisons = derive2 { name="GroupComparisons"; version="0.1.0"; sha256="0fxgh1mksrfmd4yjrpxg3nfby5wyx75lj0shb5xrdzl7pxzh56ai"; depends=[car]; };
   GroupSeq = derive2 { name="GroupSeq"; version="1.3.5"; sha256="0c74nlsqa5ly0kf6p4n7gfvd0ygkq78bx851ryniwpnnalvsq8l7"; depends=[]; };
   GroupTest = derive2 { name="GroupTest"; version="1.0.1"; sha256="1v2230mw0irsr5y8n45g8sd362jp7f6dy2r532mhflfdqy6i2khs"; depends=[]; };
   GrpString = derive2 { name="GrpString"; version="0.3.2"; sha256="14ss6assqk6s9kv4bvzlydm8qrbnslm4vj876q5dn2dw4k50dai1"; depends=[cluster plyr Rcpp]; };
@@ -1469,10 +1531,13 @@ in with self; {
   HAC = derive2 { name="HAC"; version="1.0-5"; sha256="0dc79qjhyydq0k4d8wvg970hs56i9yhxjrh5ky9a178ya61vw208"; depends=[copula numDeriv]; };
   HAP_ROR = derive2 { name="HAP.ROR"; version="1.0"; sha256="1id9amz1cc2l2vnpp0ikbhf8ghbgzqd1b9dfivnyglg7996c3gbg"; depends=[ape hash]; };
   HAPim = derive2 { name="HAPim"; version="1.3"; sha256="03qy0pxazv3gdq3fck7171ixilb9zi1dwnvc4v7d726g0lvn80pg"; depends=[]; };
+  HARModel = derive2 { name="HARModel"; version="0.1"; sha256="182ibz3xhq7wz444rsf1q8rsz1fm8ma8n3wvvb76n12ydc6hx7cr"; depends=[Rcpp RcppArmadillo sandwich xts zoo]; };
   HARtools = derive2 { name="HARtools"; version="0.0.5"; sha256="10a92jsk1ccgxi5g6byrs4fbj5l2kih7vhib0jg6spdqi6rhqla1"; depends=[assertthat htmltools htmlwidgets jsonlite magrittr]; };
   HBP = derive2 { name="HBP"; version="0.1.2"; sha256="0khw15xj3k40bsdbbs1m5ad1ykji3fx0549697c1svhkm7zrrny4"; depends=[BiocInstaller coin flexclust ggplot2 gplots HiTC igraph lattice multcomp OmicCircos pgirmess reshape2 rtracklayer]; };
   HBSTM = derive2 { name="HBSTM"; version="1.0.1"; sha256="0bx7dxcfj46k4kqpqb39w4qkm4hvr1ka8d8rws445vkyl31kr0q6"; depends=[fBasics maps MASS]; };
   HBglm = derive2 { name="HBglm"; version="0.1"; sha256="1sral7lh5qw5mn31n8459pk52frgw1bjq0z5ckpsnbc4qf3xxcjn"; depends=[bayesm Formula MfUSampler sns]; };
+  HCR = derive2 { name="HCR"; version="0.1.1"; sha256="14s46dyw3ifp3pwwlcwbbl47i6hy2whjj1n65i28am5a33nycgha"; depends=[data_table]; };
+  HCT = derive2 { name="HCT"; version="0.1.0"; sha256="0p1bj0spqff8m27lvxdfhk8z1r1z04v1dsv7mqbjyzl07w005hk3"; depends=[rstan]; };
   HCmodelSets = derive2 { name="HCmodelSets"; version="0.1.1"; sha256="0xyaap718x01g2w5gk6yz3s87zvxfymhfn5klazn16jh8v446m4f"; depends=[ggplot2 mvtnorm survival]; };
   HDCI = derive2 { name="HDCI"; version="1.0-2"; sha256="0wxbv54kbygymhh4r7052vnbj603c1kya01ykvmqzzkjyyfzidkz"; depends=[doParallel foreach glmnet iterators lattice Matrix mvtnorm slam]; };
   HDDesign = derive2 { name="HDDesign"; version="1.1"; sha256="1jim4h9bwn8r637va7m81kwwsfwyzs9pzn5a9i7c8xz8b1x191bj"; depends=[]; };
@@ -1481,11 +1546,14 @@ in with self; {
   HDMD = derive2 { name="HDMD"; version="1.2"; sha256="0na0z08fdf47ghfl2r3fp9qg5pi99kvp7liymwxym2wglkwl4chq"; depends=[MASS psych]; };
   HDPenReg = derive2 { name="HDPenReg"; version="0.93.2"; sha256="0blmp7cwsklp8aqdcyyjmv419cgc7iz0pb4629y8slqw0zq2n6gm"; depends=[Matrix Rcpp rtkore]; };
   HDclassif = derive2 { name="HDclassif"; version="2.1.0"; sha256="1d79wki03yyr3hqz44xlx07msmxb59sm2mrq2za34fdbvvrmw58v"; depends=[MASS rARPACK]; };
+  HDclust = derive2 { name="HDclust"; version="1.0"; sha256="1wdnigpsvwi7kpmnmv1zzkdjlb2iff76x83g06y9fbrdywhjcbgh"; depends=[Rcpp RcppProgress]; };
+  HDcpDetect = derive2 { name="HDcpDetect"; version="0.1.0"; sha256="0ai35d9df5pmva52sb1rr20f11h0mbal6d179g865b7w6n90kfr1"; depends=[]; };
   HDoutliers = derive2 { name="HDoutliers"; version="1.0"; sha256="0pby640bad0jcf1lkwg2g6flassb1pimnjm411c6x8rgvmiphc23"; depends=[FactoMineR FNN mclust]; };
-  HDtest = derive2 { name="HDtest"; version="0.1"; sha256="0vlwpx9l6r0izfcf9fgna72w39w64b95s3q527mapjb6a3676avg"; depends=[checkmate doParallel expm foreach MASS mvtnorm]; };
+  HDtest = derive2 { name="HDtest"; version="2.1"; sha256="1c9x4s59762sp7drbm5h1xv22kpifq7p0x3dkrfcd0ficbbma5v8"; depends=[checkmate clime doParallel expm fastclime foreach MASS mvtnorm]; };
   HDtweedie = derive2 { name="HDtweedie"; version="1.1"; sha256="14awd7sws0464f68f5xwnv1xvr0xflvx2z2zzcfj1csvk3af0zzj"; depends=[]; };
-  HEMDAG = derive2 { name="HEMDAG"; version="2.1.3"; sha256="110c37y08ivqvh5qcn6plsxf7ariqwdx6my7xv83kj2v570a4qiw"; depends=[graph PerfMeas precrec preprocessCore RBGL]; };
-  HGNChelper = derive2 { name="HGNChelper"; version="0.3.6"; sha256="1bm6zxwafbp65p6w4rk2y1bw7ig60br2mk75c4frdzqw3yw0zwxd"; depends=[]; };
+  HEMDAG = derive2 { name="HEMDAG"; version="2.2.5"; sha256="0j4zq8lhpscay8gvlvgzpxiwaka2hgx15lx3v16k17iwafm6b3fw"; depends=[doParallel foreach graph iterators plyr precrec preprocessCore RBGL]; };
+  HGNChelper = derive2 { name="HGNChelper"; version="0.5.2"; sha256="02hqd1jajbmilwyzgpy74xy8n1406zpkha9hpzzar5pmjda41nn9"; depends=[]; };
+  HGSL = derive2 { name="HGSL"; version="1.0.0"; sha256="1p453xr3d1bmqc6mrmzb0hz9p0gp25m6v6qr0l3bapcf71vzbvq1"; depends=[]; };
   HH = derive2 { name="HH"; version="3.1-35"; sha256="0sykmmipbph9x7k371liiyj2vmqv0as2hr9x6yrn38ls6bscjlj4"; depends=[abind colorspace gridExtra Hmisc lattice latticeExtra leaps multcomp RColorBrewer reshape2 Rmpfr shiny vcd]; };
   HHG = derive2 { name="HHG"; version="2.2"; sha256="114nfpdjdisryil9l8cws885qdskgrjm2cclx543hh4cdhpnkxnp"; depends=[Rcpp]; };
   HI = derive2 { name="HI"; version="0.4"; sha256="0i7y4zcdr6wcjy43lz9h8glzpdv0pz7livr95xb1j4p8zafykday"; depends=[]; };
@@ -1497,22 +1565,25 @@ in with self; {
   HKprocess = derive2 { name="HKprocess"; version="0.0-2"; sha256="1j2yhb7k8zf4nlzdf0p6x9ca7ak4lwwak8mcc60kpilw2fws27k5"; depends=[gtools MCMCpack]; };
   HLMdiag = derive2 { name="HLMdiag"; version="0.3.1"; sha256="02pgvfyj3xpy7laxryqivsws8jl3m79fwfzpqj8ad794a06gh87g"; depends=[ggplot2 MASS Matrix mgcv plyr Rcpp RcppArmadillo reshape2 RLRsim]; };
   HLSM = derive2 { name="HLSM"; version="0.8"; sha256="1503n1qb91ca2m37g4lfzgzh1kh5l74g7z1r9s5grsj2s9by0ayh"; depends=[coda igraph MASS]; };
-  HMDHFDplus = derive2 { name="HMDHFDplus"; version="1.1.8"; sha256="15z0war5isw9xnln7py3di8f45pwvdw6x6wljl18fcxpmanmlfcf"; depends=[RCurl XML]; };
+  HMDHFDplus = derive2 { name="HMDHFDplus"; version="1.9.1"; sha256="0gqaagzzspw3a40dqsqhxhjb8kii6xsc62p9b464rkhrwrm5i4z8"; depends=[httr RCurl XML]; };
   HMM = derive2 { name="HMM"; version="1.0"; sha256="0z0hcqfixx1l2a6d3lpy5hmh0n4gjgs0jnck441akpp3vh37glzw"; depends=[]; };
   HMMCont = derive2 { name="HMMCont"; version="1.0"; sha256="1drni4f72x83sprn65wnhw0pv1q8lfkgmxdr9h4rwv1accril85x"; depends=[]; };
-  HMMEsolver = derive2 { name="HMMEsolver"; version="0.1.0"; sha256="19iwy0nj0vw3cslrfdai1l1yg84c5diyxpy65jd2f419ag3rmki3"; depends=[Rcpp RcppArmadillo Rdpack]; };
+  HMMEsolver = derive2 { name="HMMEsolver"; version="0.1.1"; sha256="16wiy9dlfbhn20mqq3qa5hbhaxkaqxw5wbdwcj4is5pd6zl0501p"; depends=[Rcpp RcppArmadillo Rdpack]; };
+  HMMcopula = derive2 { name="HMMcopula"; version="1.0.1"; sha256="1dylgfbsij9xjkslh42vp37fbgvpafpyvjbyb234pgrynjgi1kr2"; depends=[copula doParallel foreach matrixcalc mvtnorm]; };
+  HMMextra0s = derive2 { name="HMMextra0s"; version="1.0.0"; sha256="15y5q92x69sn80pc2x7xwbnsfrqpf7cjdja4hkq861jshkksbmg1"; depends=[ellipse mvtnorm]; };
   HMMoce = derive2 { name="HMMoce"; version="1.0.0"; sha256="0w2hrqjz75j9l6wimz9rsr8bwa5rvag0pavmyqkcb8jgqdgka8hx"; depends=[curl doParallel dplyr fields foreach imager locfit lubridate maptools raster RColorBrewer rgeos RNetCDF sp]; };
   HMP = derive2 { name="HMP"; version="1.5.1"; sha256="0v32pkgr9rhpz77y18z356lc68hcncbszawwqsldwhwc8dvb3rwn"; depends=[dirmult doParallel foreach ggplot2 gplots lattice MASS rpart rpart_plot vegan]; };
   HMPTrees = derive2 { name="HMPTrees"; version="1.4"; sha256="1jha64iyb0816rdg2i3z7i31z02r72k6acmvw0ibw3sli8zcvphb"; depends=[ape dirmult doParallel foreach HMP]; };
   HMR = derive2 { name="HMR"; version="0.4.2"; sha256="0rbpghih99avaq803f6hb66pfbqgzh1i2yaqs0mhbj61yyjzyb7b"; depends=[]; };
   HMVD = derive2 { name="HMVD"; version="1.0"; sha256="0agzvsl2n3zg3i519b93jqpiq9zix0bbrjdzk3ymsbb42dzkmj0d"; depends=[MASS]; };
   HPbayes = derive2 { name="HPbayes"; version="0.1"; sha256="1kpqnv7ymf95sgb0ik7npc4qfkzc1zb483vwnjpba4f42jhf508y"; depends=[boot corpcor MASS mvtnorm numDeriv]; };
-  HRM = derive2 { name="HRM"; version="0.9.1"; sha256="0pv3lly5rm620868mkka3m0hp5k2yrpymwdjdh19s4vdj4xjnb15"; depends=[data_table ggplot2 MASS matrixcalc plyr pracma reshape2 xtable]; };
+  HRM = derive2 { name="HRM"; version="1.0.2"; sha256="0krd27raa2ys2gsgqpbxpfnmigj8s6mk3al7fh3czx5l0d73iqy1"; depends=[data_table doBy ggplot2 MASS matrixcalc mvtnorm plyr pseudorank Rcpp reshape2 xtable]; };
   HRQoL = derive2 { name="HRQoL"; version="1.0"; sha256="1gr9rhr8gdnh7bw2v3r0xc3yhmzrx2gzgsd8wd5mmsp81ph0h5lz"; depends=[car fmsb Matrix matrixcalc numDeriv RColorBrewer rootSolve]; };
   HSAR = derive2 { name="HSAR"; version="0.4.2"; sha256="0rxb2klmyynr8rzq6ka8p40lw81wjd0jkw2wg3vg90zny0zps98j"; depends=[Rcpp RcppArmadillo spdep]; };
   HSAUR = derive2 { name="HSAUR"; version="1.3-9"; sha256="0b2hyn59lr2pma87fcj7mli3qmrbnfhgd8fv02fa317rj52399qz"; depends=[]; };
   HSAUR2 = derive2 { name="HSAUR2"; version="1.1-17"; sha256="0jc554lz5lj7180vd4rbrjkywar4bh38c7i9kyxhd5clg4afxpw8"; depends=[]; };
   HSAUR3 = derive2 { name="HSAUR3"; version="1.0-9"; sha256="1rpvblak0xvkavbvbd35zq1lcsl5z1zp30vn70wqbkdj7szhj9b4"; depends=[]; };
+  HSDiC = derive2 { name="HSDiC"; version="0.1"; sha256="0wiixb1ylx0l8qfgh5ark6alkdq87xaak1jlxizw1m589vghvqfp"; depends=[glmnet Matrix ncvreg quadprog]; };
   HSSVD = derive2 { name="HSSVD"; version="1.2"; sha256="1k7ga397grl0r4p0ipjgw5xlafb2528rpww67bw7mmy01w87a1cc"; depends=[bcv]; };
   HTMLUtils = derive2 { name="HTMLUtils"; version="0.1.7"; sha256="05y505jazzahnd6jsp3plqz8hd75991hhhcpcdn8093rinb1f8l1"; depends=[R2HTML]; };
   HTSCluster = derive2 { name="HTSCluster"; version="2.0.8"; sha256="0wnbfh6hdx8692jilgmv8sys1zm6fqc6mim7vvjhyqlmpm8gm0kg"; depends=[capushe edgeR plotrix]; };
@@ -1528,13 +1599,15 @@ in with self; {
   HandTill2001 = derive2 { name="HandTill2001"; version="0.2-12"; sha256="1rijjv27zwdznznvwlb5hahixmfxayr6vs11p1mzwqma8qhsn5ak"; depends=[]; };
   Hankel = derive2 { name="Hankel"; version="0.0-1"; sha256="0g3b0ji8hw29k0wxxvlnbcm0z91p4vbajbrhm6cqbccjq85lg4si"; depends=[]; };
   HapEstXXR = derive2 { name="HapEstXXR"; version="0.1-8"; sha256="00p8pziy8q6vki7brpd57c7ckc9zw41c90h47yp9vb3ndanfqavp"; depends=[survival]; };
+  Hapi = derive2 { name="Hapi"; version="0.0.3"; sha256="0jqjhfq38k161kqff5cx0vxpsmjm2y5ca7049mvqiwqwvi4fp08m"; depends=[ggplot2 HMM]; };
   Haplin = derive2 { name="Haplin"; version="7.0.0"; sha256="1hdclx33ndjgz4xvg8myngzslcrmvc994nlgf3hp3km3591j62rj"; depends=[ff ffbase MASS mgcv snow SuppDists]; };
   HaploSim = derive2 { name="HaploSim"; version="1.8.4"; sha256="0794f76hc9qvjmay7c61cmzycqafljs0g0hliq9xfrw4f23gq3sa"; depends=[]; };
   HardyWeinberg = derive2 { name="HardyWeinberg"; version="1.6.1"; sha256="16n8qanxx0p5ny5zqxafn8hwb1xv94y1wig1iql8as5a5qh8lwcz"; depends=[mice Rcpp Rsolnp]; };
   HarmonicRegression = derive2 { name="HarmonicRegression"; version="1.0"; sha256="0inz3l610wl0ibqjyrhfbmwmcfzcmcfhixai4lpkbfsyx93z2i4d"; depends=[]; };
   Harvest_Tree = derive2 { name="Harvest.Tree"; version="1.1"; sha256="021zmppy7p2iakaxirfjdb5jzakg1ijma9d25ly2ni0nx0p1mh6z"; depends=[rpart]; };
-  HelpersMG = derive2 { name="HelpersMG"; version="3.0.0"; sha256="1y5q4z9yxap16bkcjsybm2754wm0x31hfqdnp2bb4gbvhz1jhas6"; depends=[coda]; };
+  HelpersMG = derive2 { name="HelpersMG"; version="3.3"; sha256="10czlshajg20k0ipq1nqawm4wad5a3pvyf4ibg47jwhlqzfxmd7f"; depends=[coda]; };
   HeritSeq = derive2 { name="HeritSeq"; version="1.0.0"; sha256="0ibb2nkjk1d59gc1ljihihsjai3jp4jsbbariv05h1z26pgpc9p3"; depends=[cplm DESeq2 lme4 MASS pbapply SummarizedExperiment tweedie]; };
+  HextractoR = derive2 { name="HextractoR"; version="1.3"; sha256="09x1zjpkm091yr7by83ksddka8ldczb0dg09yr1gb6j68rhlbigp"; depends=[doParallel foreach seqinr]; };
   HiCblock = derive2 { name="HiCblock"; version="1.4"; sha256="07f94j9y5g6f09yi7iwag020ddfhpvrj5idfxwbr900hj3vgm1gm"; depends=[GenomeInfoDb GenomicRanges glmnet HiTC IRanges MASS Matrix rtracklayer S4Vectors]; };
   HiCfeat = derive2 { name="HiCfeat"; version="1.3"; sha256="1hf24g4cph13s0cbicll3dxvxycdzwbsy6cv297vlkw4sc574ixw"; depends=[GenomeInfoDb GenomicRanges glmnet IRanges Matrix rtracklayer]; };
   HiCglmi = derive2 { name="HiCglmi"; version="1.3"; sha256="17vwdhnf36cg56vidq7d85s4vgk2pnn5py1y2wsl2dm41vdl0847"; depends=[GenomeInfoDb GenomicRanges glmnet HiTC IRanges MASS Matrix rtracklayer S4Vectors]; };
@@ -1542,8 +1615,9 @@ in with self; {
   HiCseg = derive2 { name="HiCseg"; version="1.1"; sha256="19581k3g71wrznyqrp4hmspqyzcbcfbc48xgjlq13zmqii45hcn6"; depends=[]; };
   HiDimDA = derive2 { name="HiDimDA"; version="0.2-4"; sha256="0gxkxzys9mcy33xvsim8klaqmb2xwvy5bvgkn9r400j4qfjd3cgg"; depends=[]; };
   HiLMM = derive2 { name="HiLMM"; version="1.1"; sha256="09135cwi6kqrvzdlivm86q1dqn6cbbi6nspdm0c2s700jl49pl5z"; depends=[]; };
-  HiResTEC = derive2 { name="HiResTEC"; version="0.52"; sha256="1kci3kxrf96ba9vawh2ln1rhpzyfkj259v8iyhrdrnhq58xrvkf5"; depends=[beeswarm Biobase InterpretMSSpectrum openxlsx plyr Rdisop xcms]; };
+  HiResTEC = derive2 { name="HiResTEC"; version="0.54"; sha256="1qzdhwyrxiiwkz0j9c3pd0vdccgvhrh66sd0rc9qnh34cmqxjd6b"; depends=[beeswarm Biobase InterpretMSSpectrum openxlsx plyr Rdisop xcms]; };
   HiddenMarkov = derive2 { name="HiddenMarkov"; version="1.8-11"; sha256="1yh85pdb9r90qxcl5gxslyplxzrx8knrrsl2q65l57zfkqj185ja"; depends=[]; };
+  HierDpart = derive2 { name="HierDpart"; version="0.1.2"; sha256="115irjz5pfx3yd8saap57zsy0ssjhadkqmv7wadsnzwlpsv2wb1z"; depends=[adegenet diveRsity dplyr entropart GGally ggplot2 hierfstat reshape2 tibble]; };
   HierO = derive2 { name="HierO"; version="0.2"; sha256="1lqj5grjly4kzxl7wb192aagz2kdvpnjdan2kcg5yxwvg1xcvwv1"; depends=[bitops RCurl rneos tcltk2 XML]; };
   HighDimOut = derive2 { name="HighDimOut"; version="1.0.0"; sha256="0r7mazwq4fsz547d3nyavmqya7144lg3fkl5f7amrp48l9h85vx2"; depends=[DMwR FNN foreach ggplot2 plyr proxy]; };
   HistDAWass = derive2 { name="HistDAWass"; version="1.0.1"; sha256="1lc9pz3f6akzyisgwzfl4m5z400bailv1bmsb3snha8nhpqdk3nk"; depends=[class FactoMineR ggplot2 ggridges histogram Rcpp RcppArmadillo]; };
@@ -1556,11 +1630,11 @@ in with self; {
   Homeric = derive2 { name="Homeric"; version="0.1-3"; sha256="1vcs8fj39zpz45p7gph0mnx65hgr35na0b79i8llyw7i1h7zqzxr"; depends=[]; };
   HomoPolymer = derive2 { name="HomoPolymer"; version="1.0"; sha256="1bxc33dx9y9rr9aii4vn9d1j9v5pd4c0xayfdldz8d9m2010xr4a"; depends=[deSolve MenuCollection RGtk2]; };
   HotDeckImputation = derive2 { name="HotDeckImputation"; version="1.1.0"; sha256="1mqfn6yw5846ynrcgzka0m6ikfppa5civjkhj42rhp2v2xk25li7"; depends=[Rglpk]; };
-  Hotelling = derive2 { name="Hotelling"; version="1.0-4"; sha256="1ncq74ifdn1ha6wbkvygbwi2n0nwaj1lifyqp36sy0hql3ahrac9"; depends=[corpcor]; };
+  Hotelling = derive2 { name="Hotelling"; version="1.0-5"; sha256="1ism2lzi2kmi62gp319qsi64pj2kj5sfh50f1qnv8vgdkb76bdx5"; depends=[corpcor]; };
   HyPhy = derive2 { name="HyPhy"; version="1.0"; sha256="0994ymv7sswbp8qw3pay34s926cflw2hq2gnchw7rknybvlsrinq"; depends=[ape R_utils]; };
   HybridFS = derive2 { name="HybridFS"; version="0.1.2"; sha256="05skml3v2zm5hmd6slpmx3lfwi6x5wfgbx7cnhc6l077b11jpdd9"; depends=[caTools FSelector InformationValue ROCR woeBinning]; };
   HybridMC = derive2 { name="HybridMC"; version="0.2"; sha256="1wgzfyk0scwq9s2sdmc91fj7r4d7zlgwgnj6mdiia8w88ja8kzqy"; depends=[coda]; };
-  HydeNet = derive2 { name="HydeNet"; version="0.10.7"; sha256="001ifh5ddg7q4rckhi662zd9a8milfi3v2gmgy76x0wq2xph7yrj"; depends=[checkmate DiagrammeR dplyr graph gRbase magrittr nnet pixiedust plyr rjags stringr]; };
+  HydeNet = derive2 { name="HydeNet"; version="0.10.8"; sha256="0rb456rfx3jgvjkbn50v38aq7chi6482wxk4mm26l9n537rhdpjz"; depends=[checkmate DiagrammeR dplyr magrittr nnet pixiedust plyr rjags stringr]; };
   HydroMe = derive2 { name="HydroMe"; version="2.0"; sha256="1a1d3lay94mzwk8n22l650h3p133npdf4aj63zgrdw4760p54rqf"; depends=[minpack_lm nlme]; };
   HyperbolicDist = derive2 { name="HyperbolicDist"; version="0.6-2"; sha256="1wgqbx9ascyk6gw1dmvfz6hljvbh49gb9shr9qgf22qbq83waiva"; depends=[]; };
   IAPWS95 = derive2 { name="IAPWS95"; version="1.1.0"; sha256="03kggkcyvbgh7l9haa1ljg0sv6f2rs06r6j0w2x7cpm31qmc3yzl"; depends=[ggplot2 pander Rcpp]; };
@@ -1570,14 +1644,14 @@ in with self; {
   IATanalytics = derive2 { name="IATanalytics"; version="0.1.1"; sha256="10g9iscfjmlxrkzls9320h9azpc5fnhh6276p7zn8sxqgp1nvnz9"; depends=[]; };
   IATscores = derive2 { name="IATscores"; version="0.2.1"; sha256="1nm07wlrnjx36wr3jbv2faayh1vrlfid124b27w9v0x0dk145i82"; depends=[dplyr qgraph reshape2 stringr]; };
   IAbin = derive2 { name="IAbin"; version="1.0"; sha256="1cpj2mx72n4v0yd8jbbnhj2w5d0sc8pw7rc8ahnn1hfa38pwwsyx"; depends=[]; };
-  IBCF_MTME = derive2 { name="IBCF.MTME"; version="1.3-2"; sha256="16ynw5p26cyji6g5k7nhq56p5h86rrkrh9xr85kajb1f3dr6rmyw"; depends=[lsa tidyr]; };
+  IBCF_MTME = derive2 { name="IBCF.MTME"; version="1.4-2"; sha256="07qs8jwyxl03mslgdpnxscg67js6a6lp9sdn2gp3ahyckbb0ni74"; depends=[dplyr lsa tidyr]; };
   IBDLabels = derive2 { name="IBDLabels"; version="1.1"; sha256="1m9fd058yjxva6hin7i72i2nl285wfm0jkdn5xcng27yqlijyrm9"; depends=[]; };
   IBDhaploRtools = derive2 { name="IBDhaploRtools"; version="1.8"; sha256="1754239pdil6b383mpzyi8zb9l9hzg15dwgn5246v97g1y3mlp5r"; depends=[]; };
   IBDsim = derive2 { name="IBDsim"; version="0.9-7"; sha256="1wq0w9d4kwvq1hc5l0m8wrqfhnncapmnrh29x9vvafv50ym7yb3l"; depends=[paramlink]; };
   IBrokers = derive2 { name="IBrokers"; version="0.9-12"; sha256="0mhh4kgwrncrcysvnvah6xc7fhx5ywjzn258cs9xj9kzns0jblk6"; depends=[xts zoo]; };
   IC2 = derive2 { name="IC2"; version="1.0-1"; sha256="03jjb62msxjxdg9l3zd1ns0d2w37hkxy5pnjgaywxw3vfk4zwfj9"; depends=[]; };
   ICAFF = derive2 { name="ICAFF"; version="1.0.1"; sha256="0zazx4nv81s75appg10aayks04mx6m5n9yf5hqrbxh3yj68vzxfy"; depends=[]; };
-  ICAOD = derive2 { name="ICAOD"; version="0.9.6"; sha256="1c9zlskhsz5w1a5lkfcxclnsgxbvkgcgnbzvc3xk1mpa2zb2pvap"; depends=[cubature mnormt nloptr Rcpp RcppEigen sn]; };
+  ICAOD = derive2 { name="ICAOD"; version="0.9.7"; sha256="1x1x5z5kn55vbgx6hx44f99sp666v3wlzc26q1ap1rb8j48vz2wr"; depends=[cubature mnormt nloptr Rcpp RcppEigen sn]; };
   ICBayes = derive2 { name="ICBayes"; version="1.1"; sha256="1bmxba3bv9szzxvjf1blwxwdhw87h7s04cfn63c1gqpnpwsmr03y"; depends=[coda HI survival]; };
   ICC = derive2 { name="ICC"; version="2.3.0"; sha256="0y8zh9715cp9bglxpygqwgigrarq37sj845lk1xl0ydwinl0a6kk"; depends=[]; };
   ICC_Sample_Size = derive2 { name="ICC.Sample.Size"; version="1.0"; sha256="1w6v1jp8bfvf6c49ikswkc5527gdx5cyqnw95x00pgmm6riwlsp9"; depends=[]; };
@@ -1593,19 +1667,18 @@ in with self; {
   ICSOutlier = derive2 { name="ICSOutlier"; version="0.3-0"; sha256="1vj1y4zw8pkghkg4qnmx0yk1yw4zzl9075n5czrna9ckk2p29fmh"; depends=[ICS moments mvtnorm]; };
   ICSShiny = derive2 { name="ICSShiny"; version="0.5"; sha256="0a13vps0mkv5qs6qnl7ar0mdbkbd7i1c6kgwahmkb3id3n9bw0cl"; depends=[DT ICS ICSNP ICSOutlier rrcov shiny simsalapar]; };
   ICV = derive2 { name="ICV"; version="1.0"; sha256="1na87i39jy5d8ibldqcqz3a072ihkgcl0k629sxch9hk6v6j5lly"; depends=[]; };
-  ICcalib = derive2 { name="ICcalib"; version="1.0.7"; sha256="1p224srs1jakl7iyybcn9f6r9kcwxyrikdrfa9wjgkhz60pv88fs"; depends=[fitdistrplus icenReg ICsurv MASS msm numDeriv Rcpp RcppArmadillo survival]; };
+  ICcalib = derive2 { name="ICcalib"; version="1.0.8"; sha256="1y2w12ka0qxh9dg6dlcrnndz1xrv8gkppan64qkyk5vjrh18ajz4"; depends=[fitdistrplus icenReg ICsurv MASS msm numDeriv Rcpp RcppArmadillo survival]; };
   ICsurv = derive2 { name="ICsurv"; version="1.0"; sha256="1mbndpy3x5731c9y955wscy76jrxlgv33bf6ldqp65cwyvdgxl86"; depends=[MASS matrixcalc]; };
   ICtest = derive2 { name="ICtest"; version="0.3-1"; sha256="10wxx2b8m5h0k8f6lgf0z1xhvhr14dyrda2pf46w03fa23f5mb7l"; depends=[GGally ggplot2 ICS ICSNP JADE png Rcpp RcppArmadillo survey]; };
   IDCard = derive2 { name="IDCard"; version="0.3.0"; sha256="06b5zqmgh4clni3mv6ab2a52r4z34isbz0hd1i61793gps9fkc0y"; depends=[stringr]; };
-  IDE = derive2 { name="IDE"; version="0.1.0"; sha256="0z8nc2h3ivy7prxh9ndg8q3inh6rmjg7x969gj7z6qbml3122zq8"; depends=[DEoptim dplyr FRK ggplot2 Matrix sp spacetime sparseinv tidyr]; };
+  IDE = derive2 { name="IDE"; version="0.2.0"; sha256="13n6zsqb78mz9gpa0vvxc73fyhf7n79bcs0j0asg3fs4iy43q6qp"; depends=[DEoptim dplyr FRK ggplot2 Matrix sp spacetime sparseinv tidyr]; };
   IDF = derive2 { name="IDF"; version="1.1"; sha256="19fx04gvzwzkxbd453l3wx46s22dbnh0nxdrmsr4f7l67kihbwdr"; depends=[evd ismev]; };
   IDPSurvival = derive2 { name="IDPSurvival"; version="1.2"; sha256="0hifs8vw3rxlb5vlxs1433pcv2dh7p0mxpgb2n03d98f20vkdwfw"; depends=[gtools Rsolnp survival]; };
-  IDPmisc = derive2 { name="IDPmisc"; version="1.1.17"; sha256="0nbwdyg9javjjfvljwbp2jl0c6414c11zb2pirmm5pmimaq9vv0q"; depends=[lattice]; };
+  IDPmisc = derive2 { name="IDPmisc"; version="1.1.18"; sha256="02f5zy69y76sn9zm8i8fhcfbppnh767csza3m4j9mzpnac4n9393"; depends=[lattice]; };
   IDSpatialStats = derive2 { name="IDSpatialStats"; version="0.3.5"; sha256="05wxymvv1p7dik5y227qnp4w1lpdmqfp17zrk6iah8gyv9yjsvbh"; depends=[doParallel foreach igraph spatstat]; };
   IDetect = derive2 { name="IDetect"; version="0.1.0"; sha256="1q1jwgildhx6sp883ni7vcsa3gj997855v5ky41dyf34kv7hvdl1"; depends=[]; };
-  IDmining = derive2 { name="IDmining"; version="1.0.4"; sha256="1jjxw9pdhd3wx5qnjnssf0j3bg91li1ar5ps02dhv0c49hslg0x0"; depends=[data_table doParallel foreach]; };
+  IDmining = derive2 { name="IDmining"; version="1.0.5"; sha256="1i6wclsp97sdbj4jp6wmpf0bkj21r8y08rvmgxcsw36rmr8kd1pa"; depends=[data_table doParallel foreach]; };
   IFP = derive2 { name="IFP"; version="0.2.1"; sha256="06zyadcr8p6q0c5h9n29yl02ixysdj6lfbn9hfir0bk9hyv9yfyr"; depends=[coda haplo_stats]; };
-  IFSPlot = derive2 { name="IFSPlot"; version="1.0"; sha256="0sydm9g54v5xy6m5rikx7q020aqvsilzcbg6c4vl79g9d2r8q07s"; depends=[gplots jsonlite Rcpp RcppArmadillo reshape2 rgl]; };
   IGG = derive2 { name="IGG"; version="1.0"; sha256="1cibb9z18xc1zx1813lk14n6p5am84hm7w0hkrsif4j3p89lrwif"; depends=[GIGrvg glmnet MASS Matrix pscl]; };
   IGP = derive2 { name="IGP"; version="0.1.0"; sha256="0xv89gmyfgnq5kzcmjbp5nx9zbr3gbdzkvffp99bxbkvf759m255"; depends=[PythonInR R6]; };
   IHSEP = derive2 { name="IHSEP"; version="0.1"; sha256="1djc5509b5iyi6y0i36h77l6sq1h0w721v2isxqldcqk3gb0bx11"; depends=[lpint Rcpp]; };
@@ -1618,25 +1691,28 @@ in with self; {
   IMP = derive2 { name="IMP"; version="1.1"; sha256="0ilvgz2bngffyx6ifqqx1snsn6mmq7rx3wg44093yrviaw39qdfv"; depends=[dplyr ggplot2 shiny tidyr]; };
   IMPACT = derive2 { name="IMPACT"; version="0.1.1"; sha256="0ai22gvmfj9j00cw742szfqqay63b5lmnszkwwdfdvidls43v0bm"; depends=[]; };
   IMTest = derive2 { name="IMTest"; version="1.0.0"; sha256="0n0swbi051cr7mrjmszqg79hxa38ccyq69ws8c37ixwb0lpxmx48"; depends=[lme4 ltm MASS reshape2]; };
-  IMak = derive2 { name="IMak"; version="1.2.0"; sha256="0h9hs9zpi7glf1i4gjl8xvz5hq23ask81mxpmfjpyxv03j1bwdih"; depends=[]; };
+  IMak = derive2 { name="IMak"; version="1.2.1"; sha256="0yvmwqxp4y1bsbv37sdw3aa5w1j1hyqs5fs7nf2kkr6wj6ixq7ny"; depends=[]; };
+  IMmailgun = derive2 { name="IMmailgun"; version="0.1.2"; sha256="09acmi6xj186fb8nhj8q0nxmkp2p32a1l95glzvz84gax4xakhz8"; depends=[httr]; };
   INCATome = derive2 { name="INCATome"; version="1.0"; sha256="1gbmcirs49ydmk5rg2vl5gdy39dfx9psw5mijibzjszcfjar3kqs"; depends=[genefilter limma multtest RankProd siggenes]; };
   INDperform = derive2 { name="INDperform"; version="0.1.1"; sha256="08wp7zn0s61nl2r99r3712cxkhqp9xy2vghpjjcvr5y48dkw7kzf"; depends=[cowplot dplyr ggplot2 htmlwidgets jsonlite lazyeval magrittr mgcv nlme purrr RColorBrewer rhandsontable shiny stringr tibble tidyr vegan]; };
-  INLABMA = derive2 { name="INLABMA"; version="0.1-8"; sha256="13r89r14xpihfqddwzkhxg4jgxyl59826x2insrall3mj2yffj90"; depends=[Matrix sp spdep]; };
+  INLABMA = derive2 { name="INLABMA"; version="0.1-11"; sha256="0wzyb3c7zpksqz198kigi4rpblvk0rjamngmyabw5xdpizxdg6zi"; depends=[Matrix sp spdep]; };
   INSPIRE = derive2 { name="INSPIRE"; version="1.5"; sha256="0938l50yxnb5q628mp874ayx9ybvcjddis20y1hzm5cmlsg0hqhg"; depends=[missMDA]; };
   IPCAPS = derive2 { name="IPCAPS"; version="1.1.5"; sha256="0d1nws86k1yph2f4drwrh4jvmmc9nnqmmswpwirmgsp3ma58kc42"; depends=[apcluster expm fpc KRIS LPCM MASS Matrix Rmixmod]; };
-  IPEC = derive2 { name="IPEC"; version="0.1.0"; sha256="1dcmjvqsz3hlfymnlsld9psalfvq7z51yx39dkd11d25cj1mf8na"; depends=[MASS numDeriv]; };
+  IPEC = derive2 { name="IPEC"; version="0.1.2"; sha256="1fglr5hs61n13251145wqzvxy362fx32yzral96xd8li76ljxiic"; depends=[MASS numDeriv]; };
   IPMRF = derive2 { name="IPMRF"; version="1.2"; sha256="1zvwwhiy0p134zvm5ldc92pdd1ap72bhbrlf02rz9m2hlsxmwy67"; depends=[gbm party randomForest]; };
   IPMpack = derive2 { name="IPMpack"; version="2.1"; sha256="08b79g5a9maxnxladvc2x2dgcmm427i8p6hhgda3mw2h5qmch2q3"; depends=[MASS Matrix nlme]; };
+  IPSUR = derive2 { name="IPSUR"; version="3.0"; sha256="0nlxlmp2vjj17pxvx9nly85wnwgv19qs1a3fsw7p1c5jrk6daqqi"; depends=[actuar aplpack binom boot coin distrEx e1071 HH Hmisc lmtest mvtnorm prob qcc RcmdrPlugin_IPSUR reshape scatterplot3d TeachingDemos vcd]; };
   IPWsurvival = derive2 { name="IPWsurvival"; version="0.5"; sha256="0lmw0ifj8cds8lzyjkkv0i0zim23p0a3pawlhmhdm3nfvwawb853"; depends=[survival]; };
   IPtoCountry = derive2 { name="IPtoCountry"; version="0.0.1"; sha256="1b10z93mc31cr1c5wxp9xz9cr3jm4n4g5kav09dyallpgw60rskp"; depends=[data_table devtools dtables ggplot2 install_load maps scales]; };
   IQCC = derive2 { name="IQCC"; version="0.7"; sha256="1zalpmyywkrnci0jd8irakjhiqmr52zhj1sbxf9pz5c7wks2rdbc"; depends=[MASS miscTools qcc]; };
   IRATER = derive2 { name="IRATER"; version="0.0.1"; sha256="0jxdvjmnmangbqy3ibb5qrj9jz3wrzs0wa1r2gjk4v8vsbk0ipcf"; depends=[coda lattice plyr R2admb]; };
-  IRISMustangMetrics = derive2 { name="IRISMustangMetrics"; version="2.1.0"; sha256="033j0dba1bzbbjn7q827h4d1rw91z8gbr2bb119lds4v8zkkfpxx"; depends=[dplyr IRISSeismic RCurl seismicRoll signal stringr XML]; };
-  IRISSeismic = derive2 { name="IRISSeismic"; version="1.4.8"; sha256="0j419gn9jv9zpd2rzgsc6flz6k22gr11kany1av02cvs5dymwb4p"; depends=[pracma RCurl seismicRoll signal stringr XML]; };
+  IRISMustangMetrics = derive2 { name="IRISMustangMetrics"; version="2.1.2"; sha256="02ikg1ahz0yanq92mby00s9s1njph410mqalpzfv2pbppipw26dh"; depends=[dplyr IRISSeismic RCurl seismicRoll signal stringr XML]; };
+  IRISSeismic = derive2 { name="IRISSeismic"; version="1.4.9"; sha256="1732056jcq06wb65648vx4h80dfk0brd8igm6ssk5hgfjxzy221n"; depends=[pracma RCurl seismicRoll signal stringr XML]; };
   IROmiss = derive2 { name="IROmiss"; version="1.0.1"; sha256="01l08s1g7h8cki372daa61pw3wac3pbv5d4yqnphg5p8ihsmrc5d"; depends=[equSA huge mvtnorm ncvreg]; };
   IRTShiny = derive2 { name="IRTShiny"; version="1.2"; sha256="094ax94y6k5z4vlxfla2w19f57q0z32nwwd5npjbgmnkhvfhhl9v"; depends=[beeswarm CTT ltm psych shiny shinyAce]; };
   IRTpp = derive2 { name="IRTpp"; version="0.2.6.1"; sha256="10shzyiawk65pikawvhg58kx6fpvs1dazqmfjf3rfvly1lc0px1q"; depends=[FactoMineR MASS mvtnorm numDeriv Rcpp]; };
-  IRdisplay = derive2 { name="IRdisplay"; version="0.5.0"; sha256="1jwhcp9dp1kdqcx8zq6lzbczsm9rg5qlb8sd9aznpvn9a2745d9x"; depends=[repr]; };
+  IRdisplay = derive2 { name="IRdisplay"; version="0.6"; sha256="1w49gbdf9gj66r9kx1s0gckl9lymmz864f8x9f96mrcwxkkchdc7"; depends=[repr]; };
+  ISAT = derive2 { name="ISAT"; version="1.0.5"; sha256="0xlq568spfz527jxbqamrn1j87hnasg0kp2bcyjycaghmhsc6zmg"; depends=[gtools stringr]; };
   ISBF = derive2 { name="ISBF"; version="0.2.1"; sha256="12mk4d0m5rk4m5bskkkng5j6a9dzh8l1d74wh8lnamq7kf9ai9if"; depends=[]; };
   ISDA_R = derive2 { name="ISDA.R"; version="1.0"; sha256="0w6p2iy6s7fy8pw2cf4b5zhqcgjjwd5bkax1aqflaaj4ppmfx64v"; depends=[scatterplot3d]; };
   ISLR = derive2 { name="ISLR"; version="1.2"; sha256="1bfay6cs40crhh34v2ksn4zdxivimfyjvk19wqbnjr7vs837l3xh"; depends=[]; };
@@ -1646,9 +1722,8 @@ in with self; {
   ISOweek = derive2 { name="ISOweek"; version="0.6-2"; sha256="1f1h8pgjaa14cvaj8ldl87b4vslxwvyfj46m0hkylwp73sv3g2mm"; depends=[stringr]; };
   ISR3 = derive2 { name="ISR3"; version="0.98"; sha256="0mmpdl9ndlj9i0k3zl7ja0g7y9pm67igw925ld5qnz7a36plygxs"; depends=[]; };
   ISwR = derive2 { name="ISwR"; version="2.0-7"; sha256="1rd1wrvl8wlc8ya5lndk74gnfvj9wp29z8617v3kbf32gqhby7ng"; depends=[]; };
-  ITGM = derive2 { name="ITGM"; version="0.6"; sha256="0acrm15vb1r0nnp0bp5zf8g27i3sy3d7bpd50lj0w1rl6dgwfznh"; depends=[data_table Fgmutils ggplot2 gsubfn plyr randomcoloR rbokeh sqldf]; };
-  ITNr = derive2 { name="ITNr"; version="0.2.0"; sha256="1bpnijwlrjg2l2qi9m5dlywq8xpb019kiqw288fzv6njm1yvwy56"; depends=[animation blockmodeling circlize comtradr cowplot dplyr fastmatch GGally ggplot2 GoodmanKruskal igraph intergraph maps Matrix ndtv network networkDynamic plyr RColorBrewer reshape2 sna statnet tnet WDI xergm xergm_common]; };
-  ITRSelect = derive2 { name="ITRSelect"; version="1.0"; sha256="0zwgvcbjjd9wg19d36ygzsdkm04ndv91wg20wc3d78dbvyzy2kmh"; depends=[Formula Matrix ncvreg Rglpk svMisc]; };
+  ITNr = derive2 { name="ITNr"; version="0.3.0"; sha256="1aiqkpxnam13r4q8q03yzd6a1wvl2gf40kqncbrpfvcaiv5zsq68"; depends=[blockmodeling circlize comtradr cowplot dplyr fastmatch GGally ggplot2 GoodmanKruskal igraph intergraph maps network networkDynamic plyr RColorBrewer reshape2 sna tnet WDI xergm_common]; };
+  ITRSelect = derive2 { name="ITRSelect"; version="1.0-1"; sha256="0llr4hrlbnb728j5rw7vd3r9qlqf571hrldnm72kicis5di2v5di"; depends=[Formula Matrix ncvreg Rglpk svMisc]; };
   IUPS = derive2 { name="IUPS"; version="1.0"; sha256="01pv03ink668fi2vxqybli0kgva13gxhqfdxkwz6qk5rnpzwvf5w"; depends=[boot Matching R2jags]; };
   IalsaSynthesis = derive2 { name="IalsaSynthesis"; version="0.1.6"; sha256="15iwywvzhgiyigl8f488b7ra89rz0a7ymfsdgdlqfls3fmld7b4a"; depends=[testit]; };
   Iboot = derive2 { name="Iboot"; version="0.1-1"; sha256="1fahh86kgv2axj2qg14n87v888sc0kb567s6zr3fh5zv361phwkq"; depends=[]; };
@@ -1656,15 +1731,16 @@ in with self; {
   IgorR = derive2 { name="IgorR"; version="0.8.1"; sha256="1lkiz3gxj8i1xbr5jp69z21rpk7kz3a68h29inp1qa7zi7gikmgx"; depends=[bitops]; };
   ImaginR = derive2 { name="ImaginR"; version="0.1.7"; sha256="12ypfrqw6xym84i1axd3h0qd2md96rc0glas3rgzpdhdyw4lbfmn"; depends=[imager jpeg]; };
   Imap = derive2 { name="Imap"; version="1.32"; sha256="0b4w0mw9ljw6zxwvi0qzb08yq9n169lzgkdcwizrd07x9k9xjxs7"; depends=[]; };
+  Immigrate = derive2 { name="Immigrate"; version="0.0.1"; sha256="087hzamxb61dfsi73iv3i5i95i63ichl360h3sk18s8j217h0y3g"; depends=[pROC Rcpp]; };
   ImpactIV = derive2 { name="ImpactIV"; version="1.0"; sha256="1bb6gw1h15hscr71hy779k2x5ywzx63ylim3hby02d7fnnj46p58"; depends=[nnet]; };
   ImportExport = derive2 { name="ImportExport"; version="1.1"; sha256="12i9mwspk59zicn1mn21xrs90c8dqxm1q7alqbzscgkpf3xbjrnn"; depends=[chron gdata haven Hmisc RODBC xlsx]; };
   ImputeRobust = derive2 { name="ImputeRobust"; version="1.3"; sha256="1mpccld9dw2v5rifla5g4qydcqkfagspnnq7r8if5lfm8mji33k3"; depends=[extremevalues gamlss gamlss_dist lattice mice purrr]; };
   InPosition = derive2 { name="InPosition"; version="0.12.7"; sha256="1f7xb2kxikmja4cq7s1aiwhdq27zc6hghjbliqqpm8ci8860lb8p"; depends=[ExPosition prettyGraphs]; };
-  InSilicoVA = derive2 { name="InSilicoVA"; version="1.2.0"; sha256="12fqnim6n8ha1bm8vs6ni21s5h0jb9sny88hn0xy6nsgzzzwpw5i"; depends=[coda ggplot2 InterVA5 rJava]; };
-  IncDTW = derive2 { name="IncDTW"; version="1.0.3"; sha256="19ppjpczbjv1bpzyyyasr5szblrsjimpc04hazhdgqzhil0v5sj2"; depends=[ggplot2 Rcpp scales]; };
+  InSilicoVA = derive2 { name="InSilicoVA"; version="1.2.4"; sha256="0118xmywm0dxia8pn807njb67fcag54ysz0679kwvjyfwkb47sra"; depends=[coda ggplot2 InterVA5 rJava]; };
+  IncDTW = derive2 { name="IncDTW"; version="1.0.4"; sha256="14l13kzmf3cbhh115afxcx6diwbdfx45bvfqdv68rlzhx3dbdiwm"; depends=[data_table ggplot2 Rcpp RcppArmadillo RcppParallel scales]; };
   IncucyteDRC = derive2 { name="IncucyteDRC"; version="0.5.4"; sha256="1k7jqcyx5n4my5rbyfa693ganbk91xganyagq8x8szli9h1491ii"; depends=[cowplot dplyr drc DT ggplot2 magrittr shiny tidyr XML]; };
   IndTestPP = derive2 { name="IndTestPP"; version="1.0"; sha256="1ywl35k2syv46pz6ap5sjkynapqj04aq197czspqky0pvrq7ldr1"; depends=[]; };
-  IndepTest = derive2 { name="IndepTest"; version="0.1.1"; sha256="1fiyafi22zs8cd42pnkf1psv4nxnrj7nk088pvk99hgasb7wjhpq"; depends=[FNN mvtnorm Rdpack]; };
+  IndepTest = derive2 { name="IndepTest"; version="0.2.0"; sha256="017jasqsxm5m13rhfy9gxvd8nfib5k5y5c8520p3hcffqrxr683p"; depends=[FNN mvtnorm Rdpack]; };
   IndependenceTests = derive2 { name="IndependenceTests"; version="0.2"; sha256="04qfh2mg9xkfnvp6k7w1ip4rb663p3pzww9lyprcjvr3hcac7gqa"; depends=[xtable]; };
   IndexNumR = derive2 { name="IndexNumR"; version="0.1.0"; sha256="1385j7a1hz8i5g00x1p1rd32gq243w2zrzvk781zjqdq7az33fsw"; depends=[]; };
   IndianTaxCalc = derive2 { name="IndianTaxCalc"; version="1.0.2"; sha256="1fxw884wj9n8drk2xz3rgr4f7b4fckh5firrf5gdz6d1nk9hdvc1"; depends=[]; };
@@ -1676,16 +1752,18 @@ in with self; {
   Information = derive2 { name="Information"; version="0.0.9"; sha256="0pszwzj3r7vdvdsy9w1qz95zxp7y2bsyg36b58mm4qcvcvymd4kn"; depends=[data_table doParallel foreach ggplot2 iterators plyr]; };
   InformationValue = derive2 { name="InformationValue"; version="1.2.3"; sha256="1b5g2wyp7x5cdhmf4325n3q7afa6i352lh80j28c8s4356pr3w9j"; depends=[data_table ggplot2]; };
   InformativeCensoring = derive2 { name="InformativeCensoring"; version="0.3.4"; sha256="145k4hggymra2jnxkcck795xk280yyldfzh9ls2irnsxmxfszr52"; depends=[boot dplyr survival]; };
-  Infusion = derive2 { name="Infusion"; version="1.2.0"; sha256="00l12balvdypcypqj8b61lfbksh6jnayai4bxchnxv99h3jq4l24"; depends=[blackbox mvtnorm numDeriv pbapply proxy spaMM viridis]; };
+  Infusion = derive2 { name="Infusion"; version="1.3.0"; sha256="0z6yils8ckfk0wdi45iav2yijz2cxn1zfkg3q9l6149czlnhvws1"; depends=[blackbox foreach mvtnorm numDeriv pbapply proxy spaMM viridis]; };
   InjurySeverityScore = derive2 { name="InjurySeverityScore"; version="0.0.0.1"; sha256="13h2a95bzibszpbr6sjhm3hj03b4znrrczm8pvni70ln2lcskri0"; depends=[dplyr rlang tidyr]; };
   InspectChangepoint = derive2 { name="InspectChangepoint"; version="1.0.1"; sha256="1wirdbz4v7hk7znpjhw9j3l596lmfcrlr4wxayw7klbbdhcwq5qs"; depends=[MASS]; };
-  IntClust = derive2 { name="IntClust"; version="0.0.2"; sha256="1n0ywickky1w5m8swfidiprdnkrv0mrh9z5294bimxj5ppi1yl8v"; depends=[a4Core ade4 analogue Biobase cluster e1071 FactoMineR ggplot2 gplots gridExtra gtools limma lsa plotrix pls plyr prodlim SNFtool]; };
+  IntClust = derive2 { name="IntClust"; version="0.1.0"; sha256="0whmc084gq5zip82vnwailnwvw9jawk9rx4wqiz1lr693w9xbq66"; depends=[a4Core ade4 analogue Biobase circlize cluster data_table e1071 FactoMineR ggplot2 gplots gridExtra gtools igraph limma lsa plotrix pls plyr Rdpack SNFtool]; };
   IntLik = derive2 { name="IntLik"; version="1.0"; sha256="13ww5bsbf1vnpaip0w53rw99a8hxzziibj7j66cm31jmi8l6fznf"; depends=[maxLik]; };
+  IntNMF = derive2 { name="IntNMF"; version="1.2.0"; sha256="09qzyvv7d4wr68qrlhcd4ivr65is3mypv1vaxpswwcjmcmyr4gzp"; depends=[cluster InterSIM MASS mclust NMF]; };
   IntegrateBs = derive2 { name="IntegrateBs"; version="0.1.0"; sha256="1pkx4wpahd1sabzx55law3710x3vbh9yi6kii8gs2xfq3cb1llmq"; depends=[]; };
   IntegratedJM = derive2 { name="IntegratedJM"; version="1.6"; sha256="0fv24z7vidhn09ljk09pjzkrlg2rlwxcrhfjc53ybjjgsgay99z6"; depends=[Biobase ggplot2 nlme]; };
   IntegratedMRF = derive2 { name="IntegratedMRF"; version="1.1.9"; sha256="0kklgc48cib4bjfs9qbw13nkp8xyjdazrg6z15x69jylnxyakic7"; depends=[bootstrap ggplot2 limSolve MultivariateRandomForest Rcpp]; };
+  InterSIM = derive2 { name="InterSIM"; version="2.2.0"; sha256="14yccan88szf26w1hg1lkvmssids961gng7il3bjr2f1l0k8vd3b"; depends=[MASS NMF]; };
   InterVA4 = derive2 { name="InterVA4"; version="1.7.5"; sha256="0la99ylx8fnn4kpqa364nhs12y2hzp3sm0awsx5sfdv6n7m9js33"; depends=[]; };
-  InterVA5 = derive2 { name="InterVA5"; version="1.0.1"; sha256="1wsaf48ajqnb9cb7h13jrinmszk6ayqim15fkgxbirmp88hcy9k1"; depends=[]; };
+  InterVA5 = derive2 { name="InterVA5"; version="1.0.2"; sha256="0mjfvkpnl46kzas6ch8x3liffqixifdrdjc7vxfyc1a4az7kn8vq"; depends=[]; };
   Interact = derive2 { name="Interact"; version="1.1"; sha256="1g9zhafdpr7j410bi8p03d8x9f8m3n329x8v01yk15f65fp7pl1d"; depends=[]; };
   InteractiveIGraph = derive2 { name="InteractiveIGraph"; version="1.0.6.1"; sha256="0srxlp77xqq0vw2phfv7zcnqswi2i5nzkpqbpa5limqx00jd12zy"; depends=[igraph]; };
   Interatrix = derive2 { name="Interatrix"; version="1.1.1"; sha256="1ljxgiia0y8wv1rlm5brd0yvs1r7r5wyrs6nykmwrwwya4k34mpz"; depends=[MASS tkrplot]; };
@@ -1694,7 +1772,8 @@ in with self; {
   Interpol_T = derive2 { name="Interpol.T"; version="2.1.1"; sha256="1fbsl1ypkc65y6c0p32gpi2a2aal8jg02mclz7ri57hf4c1k09gz"; depends=[chron date]; };
   InterpretMSSpectrum = derive2 { name="InterpretMSSpectrum"; version="1.2"; sha256="1iaw4i14l2vp1f163g2q4pwv9cnqrx14ik4s8zw0iha4zwcrc3ja"; depends=[DBI doParallel enviPat foreach plyr Rdisop RSQLite]; };
   IntervalSurgeon = derive2 { name="IntervalSurgeon"; version="1.0"; sha256="0dpgfgnnx6r29y8y3pac1rgi503wvlwggx5dh6fhqnxw5yfink61"; depends=[Rcpp]; };
-  InvariantCausalPrediction = derive2 { name="InvariantCausalPrediction"; version="0.7-1"; sha256="1pz06l50fm8327n1v8wnvh8q51g97crb4c07si3hywd5y1hkiwkp"; depends=[glmnet linprog mboost RColorBrewer]; };
+  IntrinioStockAPI = derive2 { name="IntrinioStockAPI"; version="0.0.1"; sha256="0gvkynyi2iag2kwwb51b8125md8kw65b48zk9qdf8pppg9s1r46a"; depends=[gtools httr jsonlite stringr]; };
+  InvariantCausalPrediction = derive2 { name="InvariantCausalPrediction"; version="0.7-2"; sha256="08s1jhyyb60cjk314q9n24niq55n21h83ml3q9a2xhr956kch8ms"; depends=[glmnet mboost]; };
   InvasionCorrection = derive2 { name="InvasionCorrection"; version="0.1"; sha256="1wwx2kssjysl1lraac36pvxq34vg8qm0vwi861rs1iipfc35i84j"; depends=[lattice]; };
   Inventorymodel = derive2 { name="Inventorymodel"; version="1.1.0"; sha256="1l87xghdksgmb2k3a8j382p7ffi2pma38a6pn31sfjsa6bgmrdnk"; depends=[e1071 GameTheoryAllocation]; };
   IrishDirectorates = derive2 { name="IrishDirectorates"; version="0.2.0"; sha256="1m3c3dj4729chk1n3k7awvi1jdfnds2w36vm268azg53j6c7l4b6"; depends=[]; };
@@ -1704,8 +1783,8 @@ in with self; {
   IsoCI = derive2 { name="IsoCI"; version="1.1"; sha256="0r7ksfic6p2v95c953s4gbzzclk4ldxysm8szb8xba1w0nx2izil"; depends=[KernSmooth]; };
   IsoGene = derive2 { name="IsoGene"; version="1.0-24"; sha256="0flm0mszankvl3aizwsazyhvz2xkr4gfqiqywpc0r1swqj19610r"; depends=[affy Biobase ff Iso xtable]; };
   IsoSpecR = derive2 { name="IsoSpecR"; version="1.0.3"; sha256="1cnkzc29k0inz6kdn77l0ymzjgf1hid8jza7nla4ym2s0gidgdyf"; depends=[Rcpp]; };
-  IsoplotR = derive2 { name="IsoplotR"; version="1.3"; sha256="1c7m48vj4884xzxilgv8ykginaayy8mp35xf6xaw7v0f4x2w3bk9"; depends=[MASS]; };
-  IsoriX = derive2 { name="IsoriX"; version="0.7.1"; sha256="1x2vdgvnfkrgcrm7pdrdvr7m72y0274dab5cyhz31j8l2gqxw9la"; depends=[latticeExtra numDeriv raster rasterVis sp spaMM viridisLite]; };
+  IsoplotR = derive2 { name="IsoplotR"; version="2.1"; sha256="03fwa4agyrk5l5n42i083j36k22752vb4r87qpcw7l68h87jnbv7"; depends=[MASS]; };
+  IsoriX = derive2 { name="IsoriX"; version="0.8.1"; sha256="0rr9frj0mhismls60vgax357jgfyq2wci7rvhvp70fh5k998mzid"; depends=[lattice latticeExtra numDeriv raster rasterVis sp spaMM viridisLite]; };
   IsotopeR = derive2 { name="IsotopeR"; version="0.5.4"; sha256="0xgha5alh5y5qfz00rl73q4xlamnmrwij7kckljmy6zgrlrdnl6x"; depends=[colorspace ellipse fgui plotrix runjags]; };
   JADE = derive2 { name="JADE"; version="2.0-1"; sha256="0s7cdvhjcdxdqv4mgjd07xi3s0ngjvpxsmy0ary735rs5y6198mm"; depends=[clue]; };
   JAGUAR = derive2 { name="JAGUAR"; version="3.0.1"; sha256="0lyc8biwj9yir1i06klp2jkb31mnzwp226aw7pwabkprfhqgfmqd"; depends=[lme4 plyr Rcpp RcppArmadillo RcppProgress reshape2]; };
@@ -1714,8 +1793,9 @@ in with self; {
   JFE = derive2 { name="JFE"; version="1.2"; sha256="1jfdphn9435f9nmwnb4x2wj8fv7c2i432n9wyvrlqcm424ql0cml"; depends=[BurStFin fAssets fBasics fPortfolio iClick MASS PerformanceAnalytics quantmod rugarch tcltk2 timeDate timeSeries xts zoo]; };
   JGEE = derive2 { name="JGEE"; version="1.1"; sha256="078348n623hlyc3n9yh67vv5acsnxapmbwybvrb1i7kawmqw5msi"; depends=[gee MASS]; };
   JGL = derive2 { name="JGL"; version="2.3"; sha256="1351iq547ln06nklrgx192dqlfnn03hkwj3hrliqzfbmsls098qc"; depends=[igraph]; };
-  JGR = derive2 { name="JGR"; version="1.8-4"; sha256="0zfjfqlfrsz4wjdq78zasvgd3ldgcx20h16bbar1l7wv843j71ym"; depends=[JavaGD rJava]; };
+  JGR = derive2 { name="JGR"; version="1.8-6"; sha256="0n3z4dm4q93did5b7hw802akhr6gyidshvlj2db4sghmf07czk2c"; depends=[JavaGD rJava]; };
   JM = derive2 { name="JM"; version="1.4-8"; sha256="1nq07hw30fqnag1h08b7crl2yfs85gyrn70aaw11bdbjv06r2x55"; depends=[MASS nlme survival]; };
+  JMI = derive2 { name="JMI"; version="0.1.0"; sha256="05phkwfb9v4g9jixlvbj6br7sbi64zvrgjwfr0v87ijddkxc9si9"; depends=[Rcpp RcppArmadillo]; };
   JMbayes = derive2 { name="JMbayes"; version="0.8-71"; sha256="0vbw3z1njl3jm4qixzh5fs3gmiqz7n3kz3a4a9sdxj498z063svj"; depends=[doParallel foreach Hmisc jagsUI MASS nlme Rcpp RcppArmadillo rstan shiny survival xtable]; };
   JMcmprsk = derive2 { name="JMcmprsk"; version="0.9.3"; sha256="0bjaiygn2sq40f2cwa1c6j73748j2cx5q69pd4jgfgbpm9r25r4f"; depends=[MASS Rcpp]; };
   JMdesign = derive2 { name="JMdesign"; version="1.1"; sha256="0w5nzhp82g0k7j5704fif16sf95rpckd76jjz9fbd71pp2d80vlh"; depends=[]; };
@@ -1724,28 +1804,28 @@ in with self; {
   JPEN = derive2 { name="JPEN"; version="1.0"; sha256="12rvp5bmlkwyr1gg336k655hp09gym0d2wwry70c1rz30x1sf2zs"; depends=[mvtnorm]; };
   JRF = derive2 { name="JRF"; version="0.1-4"; sha256="1xpvscn9iawwa0vfh3kfwzdni436bf42nvm18b8abh033ljvqpij"; depends=[]; };
   JSM = derive2 { name="JSM"; version="0.1.3"; sha256="1p5vlk2fcrb42pi7srkymjacfg05vlaspvhaw94lq1rhvxdw87yl"; depends=[nlme Rcpp RcppEigen statmod survival]; };
-  JWileymisc = derive2 { name="JWileymisc"; version="0.2.1"; sha256="0cli204f1b5hj3qz62fycww12a6dv7xxxszkxgrxirw6mpdf858c"; depends=[cowplot data_table devtools foreach ggplot2 Hmisc lavaan MASS mgcv mice multcompView plyr]; };
+  JWileymisc = derive2 { name="JWileymisc"; version="0.3.1"; sha256="1683sq0fb8ms0kzfc46azkjfsk2khhq43y265k1g920s5pc7bn8q"; depends=[cowplot data_table devtools emmeans foreach ggplot2 ggthemes lavaan lme4 lmerTest MASS Matrix mgcv mice multcompView nlme psych quantreg rms robustbase VGAM zoo]; };
   JavaGD = derive2 { name="JavaGD"; version="0.6-1"; sha256="13n6xzbbjgd0bpwv2xgm3dlscg87wh32q6fcq50kk6byp6yv05sc"; depends=[]; };
   Jdmbs = derive2 { name="Jdmbs"; version="1.3"; sha256="0jjnn1lrrakai34srp9ks8a563amd1rp9vd4ydnpmgfma5qlify0"; depends=[igraph png]; };
   Jmisc = derive2 { name="Jmisc"; version="0.3.1"; sha256="1szn29dng54l2xmrm6pg3d5rmwdc1ks23vsnsmplnr5rx7yj002s"; depends=[]; };
   JoSAE = derive2 { name="JoSAE"; version="0.3.0"; sha256="1vjxzbfs8a7kpmn2lb9dca67d4njmzjr3pl16s0r9ihmmxxwwili"; depends=[nlme]; };
   Johnson = derive2 { name="Johnson"; version="1.4"; sha256="12ajcfz5mwxvimv8nq683a2x3590gz0gnyviviyzf5x066a4q0lj"; depends=[]; };
-  JointAI = derive2 { name="JointAI"; version="0.2.0"; sha256="1y3mvj1m2mi6ss3svfrlk5lbyh3zp1mkyjgl7fv317n3xjg006s2"; depends=[coda MASS mcmcse rjags]; };
+  JointAI = derive2 { name="JointAI"; version="0.3.0"; sha256="1xav3ngg4jfxbji1wqqwazywx9fhxm8snkssv8rbqvnmyc0nj49x"; depends=[coda MASS mcmcse rjags]; };
   JointModel = derive2 { name="JointModel"; version="1.0"; sha256="1zgs5c7saqyqxvxmhw5sxy5w67abq344aid6igw1da05bfy2az6h"; depends=[lme4 statmod survival]; };
   Julia = derive2 { name="Julia"; version="1.1"; sha256="0i1n150d89pkds7qyr0xycz6h07zikb2y07d5fcpaqs4446a8prg"; depends=[]; };
-  JuliaCall = derive2 { name="JuliaCall"; version="0.14.0"; sha256="1zrj1jn55qxxg95h1rfbfgzd7dn3hxm7gkwbin6zkcxi8qdc3690"; depends=[R6 Rcpp]; };
+  JuliaCall = derive2 { name="JuliaCall"; version="0.16.1"; sha256="11ganlkc65i4vljdjzhr419p1rw3dr4pw2jk6gvb8jk8pasfs36h"; depends=[Rcpp]; };
   JumpTest = derive2 { name="JumpTest"; version="0.0.1"; sha256="1d5zmjwmajzdg5d1ws40zchx9wiaav01fby1v3irym2mx30jgbqn"; depends=[MASS Rcpp RcppEigen]; };
-  JuniperKernel = derive2 { name="JuniperKernel"; version="1.4.0.0"; sha256="0yjfdpilz08cbnn35bxiqbn0d312mfxzdkb643db0zl34x5akxpa"; depends=[data_table gdtools jsonlite pbdZMQ Rcpp repr]; };
+  JuniperKernel = derive2 { name="JuniperKernel"; version="1.4.1.0"; sha256="1zghlfwh4wsjjp7ldp5y86ffyzc27ccl5j9lcwlp1di9slaqjign"; depends=[data_table gdtools jsonlite pbdZMQ Rcpp repr]; };
   KANT = derive2 { name="KANT"; version="2.0"; sha256="169j72pmdkcj6hv8qgmc02aps0ppvvl1vnr1hzrb1gsf7zj7bs3y"; depends=[affy Biobase]; };
   KENDL = derive2 { name="KENDL"; version="1.1"; sha256="05vsh3x0li964a485q3n19c7fahcprvg1bnrvffagkxf8w1iz153"; depends=[]; };
   KERE = derive2 { name="KERE"; version="1.0.0"; sha256="1b16cb3ihcsp9jffmd45sd7ia4pibikmj62ad344wmq22q4fpliy"; depends=[]; };
-  KFAS = derive2 { name="KFAS"; version="1.3.2"; sha256="11ikpac63as1c4mz6kdrynjyy4wrfr4qrk1m2g4gbcrg10dnc06q"; depends=[]; };
+  KFAS = derive2 { name="KFAS"; version="1.3.3"; sha256="026nrlwsmal9n76za4sjlfb5ybw88ricnazg018nc195c345ql04"; depends=[]; };
   KFKSDS = derive2 { name="KFKSDS"; version="1.6"; sha256="1g11f936p554bfxlm4slxhfxki5vqkks1mrbqw4w83v2rcb50f8d"; depends=[]; };
   KGode = derive2 { name="KGode"; version="1.0.1"; sha256="05g8zr3jm13cl6wk9m693gxa3fn5cjppm56j7ih4zzswzk9b67h9"; depends=[mvtnorm pracma pspline R6]; };
   KMDA = derive2 { name="KMDA"; version="1.0"; sha256="0x4kjjdd59wvgg699vrj99wqg3s1qbkbskis1c34xv9b8bzcv94j"; depends=[]; };
   KMgene = derive2 { name="KMgene"; version="1.2"; sha256="1yj9l1mqhvyhicyycnkd639q3zkrx15ba11z9911l4c0gql8syf1"; depends=[CompQuadForm coxme kinship2 MASS Matrix mgcv nlme survival]; };
   KMsurv = derive2 { name="KMsurv"; version="0.1-5"; sha256="0hi5vvk584rl70gbrr75w9hc775xmbxnaig0dd6hlpi4071pnqjm"; depends=[]; };
-  KODAMA = derive2 { name="KODAMA"; version="1.4"; sha256="0qzpgj6ljzd8n8vgmf53pmblsmypl86j7njd3pz0d370bxfchsqj"; depends=[Rcpp RcppArmadillo]; };
+  KODAMA = derive2 { name="KODAMA"; version="1.5"; sha256="1pb7qba7dp25x4znhvihc21z5jk6bgk6sg0v24gbvqhv5irm7kwf"; depends=[Rcpp RcppArmadillo]; };
   KOGMWU = derive2 { name="KOGMWU"; version="1.1"; sha256="0n07wrpmmvxflxpmhkp3gm40xz2w4j0l8dsljhmfiyxcf5y7kq2g"; depends=[pheatmap]; };
   KRIG = derive2 { name="KRIG"; version="0.1.0"; sha256="1hpmjzzrh5b042xh14dgxvn5x5ini63vq5jz1i6rjgvsdf734f98"; depends=[Rcpp RcppArmadillo Rdpack]; };
   KRIS = derive2 { name="KRIS"; version="1.1.1"; sha256="0v2xgdwd8lp399il6grjkysq2gj38fmjlxlvg5ciq3g3cp7cdy3m"; depends=[rARPACK]; };
@@ -1753,7 +1833,7 @@ in with self; {
   KRMM = derive2 { name="KRMM"; version="1.0"; sha256="0wxzhrrc4lx20nxjny7rcfw3bya7drn88zbrlzx9f531298xwbrk"; depends=[cvTools kernlab MASS robustbase]; };
   KSD = derive2 { name="KSD"; version="1.0.0"; sha256="0wqmbr51yv7f87pnhph2nrj9y2d5jql2agizcaq6lax23lj6xfb7"; depends=[pryr]; };
   KSEAapp = derive2 { name="KSEAapp"; version="0.99.0"; sha256="1gfgpa2d32y6bzvf4ww70sm7niq34sqmyrhi0phlqxshqq9xviqc"; depends=[gplots]; };
-  KScorrect = derive2 { name="KScorrect"; version="1.2.3"; sha256="1i69glkyi3ydzfgd8d6zrbgjq7gy9laq00jdppbqnl13i1n14sp7"; depends=[MASS mclust]; };
+  KScorrect = derive2 { name="KScorrect"; version="1.2.4"; sha256="16qdmvgx3y170i495vmph2bhnc3j1z5232jibr3yzxl9i887kk0f"; depends=[MASS mclust]; };
   KSgeneral = derive2 { name="KSgeneral"; version="0.1.1"; sha256="1ldk3fvwbr6hw7x3ydgzixgc41a0fbbic699zjlnpj5x4mjg1qby"; depends=[dgof MASS Rcpp]; };
   KTensorGraphs = derive2 { name="KTensorGraphs"; version="0.1"; sha256="1hsndxslqgca0ay4q277zjwnwz8bzwfkzz915dgqvjd2v4afrvzx"; depends=[]; };
   KappaGUI = derive2 { name="KappaGUI"; version="2.0.2"; sha256="0vklny804xpd9r60j4a01j2gak8jizwjw0abf7yvbcalv3zbpb3k"; depends=[irr shiny]; };
@@ -1764,7 +1844,7 @@ in with self; {
   KernSmooth = derive2 { name="KernSmooth"; version="2.23-15"; sha256="1xhha8kw10jv8pv8b61hb5in9qiw3r2a9kdji3qlm991s4zd4wlb"; depends=[]; };
   KernSmoothIRT = derive2 { name="KernSmoothIRT"; version="6.1"; sha256="1hq4sykddh9sg24qrnccii89nqxmq7hnldhn8wl6y62aj0h1nrqm"; depends=[plotrix Rcpp rgl]; };
   KernelKnn = derive2 { name="KernelKnn"; version="1.0.8"; sha256="1xiz90n9wggn5fv42h8c6gd3j6vmkwyq1433wwnmzrz5kw7f6vgb"; depends=[Rcpp RcppArmadillo]; };
-  Kernelheaping = derive2 { name="Kernelheaping"; version="2.1.8"; sha256="03m5dwgm98x6ncifyyp2yxln4bm87rkrx84bdihywjd0x73pbklv"; depends=[fastmatch ks magrittr MASS mvtnorm plyr sp sparr]; };
+  Kernelheaping = derive2 { name="Kernelheaping"; version="2.2.0"; sha256="06vb8zpdf5brjsfiyd1s3gmhlfprpkw7fmjr594p4lw354lvhb4m"; depends=[fastmatch ks magrittr MASS mvtnorm plyr sp sparr]; };
   KnapsackSampling = derive2 { name="KnapsackSampling"; version="0.1.0"; sha256="17yzmd11k1n5iy54vbcvpzvkm8ypbl6n1kfi931wwrrcq9y7hg22"; depends=[lpSolve]; };
   Knoema = derive2 { name="Knoema"; version="0.1.16"; sha256="0v6w8rrw8nd4l1by5w9xd4hbxp55cma89kljha47ykvmnflsrjsc"; depends=[base64enc digest httr jsonlite lubridate xts zoo]; };
   KnowBR = derive2 { name="KnowBR"; version="1.8"; sha256="1krkaxwx8qqlnlwc9fc663qx5y9c9lcws69fnqjdcfgim54pl3xz"; depends=[fossil mgcv plotrix sp vegan]; };
@@ -1772,8 +1852,8 @@ in with self; {
   KoulMde = derive2 { name="KoulMde"; version="3.1.0"; sha256="158lg1jr3lgn85wgdxww6nldy9blxnnjry6hwkp6kcjpg9jljjl8"; depends=[expm Rcpp RcppArmadillo]; };
   Kpart = derive2 { name="Kpart"; version="1.2.2"; sha256="02df0pr8a0gm8558gbw9svxf5sybmg27grymy71ar9hjnhw5xlf2"; depends=[leaps]; };
   KraljicMatrix = derive2 { name="KraljicMatrix"; version="0.2.1"; sha256="0yzilmiiyzd2x3v0cnjphf0wdwiblh37kgrvmfrdy49qly48pvi2"; depends=[dplyr ggplot2 magrittr tibble]; };
-  KrigInv = derive2 { name="KrigInv"; version="1.3.1"; sha256="0fcfv2vl572l8qp1ilhjai6zrw15bf1z41qm7xlfspfbj611ga7k"; depends=[DiceKriging pbivnorm randtoolbox rgenoud]; };
-  L0Learn = derive2 { name="L0Learn"; version="1.0.2"; sha256="0igfmw4kpc5m6r1kj944ch48sdyx82c8imid3vrk67q2pcwqqc1a"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2]; };
+  KrigInv = derive2 { name="KrigInv"; version="1.4.1"; sha256="0x12xff7lgr1v2243shfz9a8r02qs56p7i0b8j2s6bmrzj1abrwb"; depends=[anMC DiceKriging mvtnorm pbivnorm randtoolbox rgenoud]; };
+  L0Learn = derive2 { name="L0Learn"; version="1.0.8"; sha256="1d29qy7b4msb6iii9gw4i3xblyb150pvnp99jm7pl2ayh0c1vnlr"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2]; };
   L1pack = derive2 { name="L1pack"; version="0.38.19"; sha256="09n1045lsx1ap47mhzcqghmwwhj24kvpjjr3ysprj058jp5g7ri0"; depends=[]; };
   LAGOSNE = derive2 { name="LAGOSNE"; version="1.1.0"; sha256="08sf4mm40gv9mr57pxsl1b62s2dqvbvrhy2irzqspyqk5ai2aw0m"; depends=[curl dplyr lazyeval magrittr purrr rappdirs sf stringr]; };
   LAM = derive2 { name="LAM"; version="0.3-48"; sha256="12a38rvb0krfl0yffhyn7nmxcgkga46kfn4h7wzvnr0hpl5a7kjf"; depends=[CDM coda MASS numDeriv Rcpp RcppArmadillo sirt TAM]; };
@@ -1781,7 +1861,7 @@ in with self; {
   LARF = derive2 { name="LARF"; version="1.4"; sha256="1sqib7smgjacn07ishwls1nlbvcb6fpp1vhrjwf9g4xf9jk30i8h"; depends=[Formula]; };
   LBSPR = derive2 { name="LBSPR"; version="0.1.2"; sha256="09jvdjagf4icnigbfw18z36ya4llg84fa6j2khd22cl60y81r5i3"; depends=[dplyr ggplot2 gridExtra plotrix RColorBrewer Rcpp shiny tidyr]; };
   LCA = derive2 { name="LCA"; version="0.1"; sha256="14nhx2fs18558zljnw56mdz3qx30v394llhzswxhznjfiiqc9z5h"; depends=[]; };
-  LCAextend = derive2 { name="LCAextend"; version="1.2"; sha256="1y9azq9v42a3z5fq6gj8js89qblb2z93k4mg4jmw0wgkyv6mysfc"; depends=[boot kinship2 mvtnorm rms]; };
+  LCAextend = derive2 { name="LCAextend"; version="1.3"; sha256="1l75y3vkbsmsm3pjd5pwy0hlv6gz5ryxs4pkx9aiyhxz2y9wnhpb"; depends=[boot kinship2 mvtnorm rms]; };
   LCAvarsel = derive2 { name="LCAvarsel"; version="1.1"; sha256="0aqc9rbrc8n6s9xllmamby219qsnxd4ajvffjr21qlkhkaklirb1"; depends=[doParallel foreach GA MASS memoise nnet poLCA]; };
   LCF = derive2 { name="LCF"; version="1.7.0"; sha256="1n5gwnkj26b7w6bzapda049bd4aqb317cip05nf0vy04xjc8giyc"; depends=[quadprog]; };
   LCFdata = derive2 { name="LCFdata"; version="2.0"; sha256="1x3vbr6hdviqvd6dxn1kb449g0q5zkfmjsmr5nxd2g82p69lv3xm"; depends=[]; };
@@ -1792,7 +1872,7 @@ in with self; {
   LDPD = derive2 { name="LDPD"; version="1.1.2"; sha256="1khdx8vwlpliyjc4sxcdiywbxl8lc9f5s3457vcip1j8dv537lbm"; depends=[MASS nleqslv]; };
   LDRTools = derive2 { name="LDRTools"; version="0.2-1"; sha256="05srfyplsypi3whfa71lx7pnad23irpf0p7rxmrpv28jgdmrz6wf"; depends=[]; };
   LDcorSV = derive2 { name="LDcorSV"; version="1.3.2"; sha256="0lvk3xz400yd3w0cjdfi6hir1ym1mffd504vycwgck5fkzljpcvx"; depends=[]; };
-  LDheatmap = derive2 { name="LDheatmap"; version="0.99-4"; sha256="1xdvpydnrlzb6q4hm0rcflf0vysww1xszj6ynly6a32xqmhg0sbq"; depends=[genetics snpStats]; };
+  LDheatmap = derive2 { name="LDheatmap"; version="0.99-5"; sha256="0il3g3n3bzv74lz7dlhyiwc2x2417v6yhx2g47pahxdzqa09kf4s"; depends=[genetics snpStats]; };
   LDtests = derive2 { name="LDtests"; version="1.0"; sha256="1jwqr7zlp9hv7vw8xp80xvrwbdv796wjgr914v393wfa07j5wbd1"; depends=[]; };
   LEANR = derive2 { name="LEANR"; version="1.4.9"; sha256="053xy13ys5hibafdnbkwqdk36hw7dhanp4frfacpfpn5f9nfh95r"; depends=[foreach igraph]; };
   LEAP = derive2 { name="LEAP"; version="0.2"; sha256="1yrhanxvr7krvllqzv17qkc4wvmd7mgl57am8sn53773dbfipfc4"; depends=[]; };
@@ -1808,17 +1888,17 @@ in with self; {
   LINselect = derive2 { name="LINselect"; version="1.1"; sha256="1dx97pnfwlv6w00qp8b2ah8jl1arfh39x1vzry8zrxgxisq407wq"; depends=[elasticnet gtools MASS mvtnorm pls randomForest]; };
   LIStest = derive2 { name="LIStest"; version="2.1"; sha256="1gk253v3f1jcr4z5ps8nrqf1n7isjhbynxsi9jq729w7h725806a"; depends=[]; };
   LLM = derive2 { name="LLM"; version="1.0.0"; sha256="0x4488mg8q4nhyjhqlzkwmh51frkkjn0gir22rk8rfzg4r6d18d6"; depends=[partykit RWeka stringr]; };
-  LLSR = derive2 { name="LLSR"; version="0.0.2.0"; sha256="0nxp1sfnhgf0iqfhwqvr7a0mvs3swsj2l0shcyrb3zliyd23g5ax"; depends=[digest ggtern rootSolve svDialogs XLConnect]; };
+  LLSR = derive2 { name="LLSR"; version="0.0.2.1"; sha256="0sspsj12ccaxbs37dlwa2y3dnq47xdhbxskx4qj81nxb9il7151d"; depends=[digest ggplot2 rootSolve svDialogs XLConnect]; };
   LMERConvenienceFunctions = derive2 { name="LMERConvenienceFunctions"; version="2.10"; sha256="08jz0i7sv7gn3bqckphbmnx0kc6yjnfvi06iyf7pcdzjaybxhj06"; depends=[fields LCFdata lme4 Matrix mgcv rgl]; };
-  LMest = derive2 { name="LMest"; version="2.4.2"; sha256="0a0azn3lyy0n1882c0zxf7f1b0h26rcck8mmsbh2wxg7r3nckkrd"; depends=[MASS MultiLCIRT]; };
-  LMfilteR = derive2 { name="LMfilteR"; version="0.1.1"; sha256="0wjrnzki6mnar3lxfr2mcvk98b58qkqpbb9xx7vgrw567g1ga1ig"; depends=[MASS]; };
+  LMest = derive2 { name="LMest"; version="2.4.3"; sha256="0ynkm4f1ri80h5fraywyvwhrm6f6sa7hp95rzl29zc91904yycx1"; depends=[MASS mmm MultiLCIRT mvtnorm]; };
+  LMfilteR = derive2 { name="LMfilteR"; version="0.1.2"; sha256="10agjrljnqw689nn9af9ihhb9sq2gmsx7l3zfmrizkavjjk67mcd"; depends=[MASS]; };
   LN0SCIs = derive2 { name="LN0SCIs"; version="0.1.5"; sha256="09zr6lrvv7lw9qp3vz4n2dv0v3q7wq06wwvwpb2pm0r335bnrf89"; depends=[]; };
   LNIRT = derive2 { name="LNIRT"; version="0.3.0"; sha256="1xlfk3a0x8abs6xwsm9s50nvi53s1a7nhnskhvjbi3rdzkvkrwxl"; depends=[MASS]; };
   LOGICOIL = derive2 { name="LOGICOIL"; version="0.99.0"; sha256="1wgg7kigzzk5ghjn3hkjf1bb8d6mvjfmkwq64phri5jpxd742ps9"; depends=[nnet]; };
   LOST = derive2 { name="LOST"; version="1.3"; sha256="01ymnczsnfml04hb6hbi041khkz2aki78qr3hriw7n3bzs5i7xim"; depends=[e1071 gdata MASS miscTools pcaMethods rgl shapes]; };
   LPCM = derive2 { name="LPCM"; version="0.45-0"; sha256="15gpb59556s28npdsw1r821rld7b11y1m2m97m320n9k0z4vbk3i"; depends=[]; };
   LPGraph = derive2 { name="LPGraph"; version="2.0"; sha256="1d3czxihaz3f09bfb34knqb6prhcx50kh8y4qrhhakic999z6ifw"; depends=[car PMA SDMTools]; };
-  LPKsample = derive2 { name="LPKsample"; version="1.0"; sha256="0vxps8zd9zg1aw4p2qd8wamcjkbl68yvppnlvshm2ry5dahwz1wk"; depends=[apcluster igraph mclust]; };
+  LPKsample = derive2 { name="LPKsample"; version="2.0"; sha256="1jg99025vk42rnjdymh3nj71npn4pmdsmk6rvnx3lykpi72f85dz"; depends=[apcluster igraph mclust]; };
   LPM = derive2 { name="LPM"; version="2.7"; sha256="1anjgflj1272xrghn3s9a21f2dfggppnzjqh3p8zaid91bzg0g34"; depends=[fracdiff MASS QRM]; };
   LPR = derive2 { name="LPR"; version="1.0"; sha256="16kmfm6p7cwnzpd054ik0cy0ipif6zssdfyxyfm0cijz8z4z40x7"; depends=[doParallel foreach glmnet iterators lattice Matrix slam]; };
   LPS = derive2 { name="LPS"; version="1.0.10"; sha256="0gf3jmhfki01z8fm5xdx59gxvhgzqd10x2iwa8369iz9dvwbjk8j"; depends=[]; };
@@ -1830,13 +1910,13 @@ in with self; {
   LRTH = derive2 { name="LRTH"; version="1.3"; sha256="08vakwb7ca7956gifynzijka441yyx0wd5bq5jfhz56lzcxgfb99"; depends=[]; };
   LRcontrast = derive2 { name="LRcontrast"; version="1.0"; sha256="0fs06p853r42nws2camvs87py39hb1ssxhfm6d5n9kkq81snfx4q"; depends=[DoseFinding]; };
   LS2W = derive2 { name="LS2W"; version="1.3.4"; sha256="1h4vvl1gfxkdjmy6syl0gf4fv03xxxw82cxwvy10b40sf20lwmnv"; depends=[MASS wavethresh]; };
-  LS2Wstat = derive2 { name="LS2Wstat"; version="2.1"; sha256="0i1b409bhvlm4hpcgm4bhd7pqk4bkcyy48d7bci254ppcr7z1m9q"; depends=[geoR LS2W matrixStats RandomFields spdep]; };
+  LS2Wstat = derive2 { name="LS2Wstat"; version="2.1-1"; sha256="0y9di5n8ls4xzw0yrh0kx8c73s4wf1kzdyy8ssk6garvjln9dn9v"; depends=[geoR LS2W matrixStats RandomFields spdep]; };
   LSAfun = derive2 { name="LSAfun"; version="0.5.2"; sha256="114qhnx4dr7ywh3fzkjd35xygpnn74g5nv66ahj7hf5w0gg13ws9"; depends=[lsa rgl]; };
   LSAmitR = derive2 { name="LSAmitR"; version="1.0-2"; sha256="15qyij193scrvc1ghcssr6qdzxc4l4qh199s09bz5hvr62zwfdgb"; depends=[Hmisc lme4]; };
   LSC = derive2 { name="LSC"; version="0.1.5"; sha256="1nlnwqb24sbgvl96azh8a833ij5xknjr2wr8shs59lm2n63a3ql9"; depends=[fields gam LICORS Matrix RColorBrewer]; };
   LSD = derive2 { name="LSD"; version="4.0-0"; sha256="0fsp3pwrnnic9mzkd6yxa4bnxbvg68712lb20vd42wf6jb39r2h3"; depends=[]; };
   LSDinterface = derive2 { name="LSDinterface"; version="0.4.0"; sha256="0nj4m924cj7x2djalrfyrrmycq2ha6s52m34kjgs7fc9f548lhx0"; depends=[abind]; };
-  LSDsensitivity = derive2 { name="LSDsensitivity"; version="0.2.0"; sha256="1aab4djk510q35gr6vj5vx1p7jhqg2ph6fw4sjbsg60bjnr3nyyi"; depends=[abind car DiceKriging kSamples LSDinterface randtoolbox rgenoud sensitivity tseries]; };
+  LSDsensitivity = derive2 { name="LSDsensitivity"; version="0.3.0"; sha256="07sjb02wx28a1zvzvapvraq9wzhn3yh111amkns3j62yrznj29hz"; depends=[abind car DiceKriging diptest kSamples lawstat LSDinterface randtoolbox rgenoud sensitivity tseries]; };
   LSMonteCarlo = derive2 { name="LSMonteCarlo"; version="1.0"; sha256="0w5042phkba5dw92r67ppp2s4khjpw5mm701dh9dya9lhj88bz6s"; depends=[fBasics mvtnorm]; };
   LSPFP = derive2 { name="LSPFP"; version="1.0.0"; sha256="074qd7zxa54cawipmba1khb6hyrkg553vc25gf2z0ydyv14shm0w"; depends=[bit64 data_table R_utils RCurl seqinr tcltk2]; };
   LSRS = derive2 { name="LSRS"; version="0.2.0"; sha256="0p70v5vbxi1rf055mqgsp8v0lxnaj53bmbghli1764yn3x1k3iw6"; depends=[]; };
@@ -1844,10 +1924,12 @@ in with self; {
   LTPDvar = derive2 { name="LTPDvar"; version="1.2"; sha256="0r9v5g5y9n85jdcvm7zpapm73ism48m3mmybpcmgcs028h2ndv7v"; depends=[]; };
   LTR = derive2 { name="LTR"; version="1.0.0"; sha256="15g5hbrwhab80sarbjgwzvsn6c4fl18h014kz5fpzf0n1rijybik"; depends=[]; };
   LTRCtrees = derive2 { name="LTRCtrees"; version="1.1.0"; sha256="07mvbk3hwl240r46ahha0a4fzq96awk963zl8dhky51b6abp83gz"; depends=[icenReg inum partykit rpart survival]; };
+  LVGP = derive2 { name="LVGP"; version="2.1.3"; sha256="0lw053jgfq20lnr3cq8r8ca579a2bcksdivdpa7gy589yphrksgs"; depends=[lattice lhs randtoolbox]; };
   LW1949 = derive2 { name="LW1949"; version="1.1.0"; sha256="147ymp7j98ihp1dcz3p5v9ar6h767phjdnga5q5vf1wwa2mxawg7"; depends=[MASS mgcv plotrix]; };
   LZeroSpikeInference = derive2 { name="LZeroSpikeInference"; version="1.0.3"; sha256="15x29afaq13iwlj66h97k3kczg9rfgp6i9d76rji58hfgh8i8by6"; depends=[]; };
   LaF = derive2 { name="LaF"; version="0.8.0"; sha256="1nasj0502i0dbzqgm1pdvmc0wj1hk2q5fzanpcsh7zslsikiqxyq"; depends=[Rcpp]; };
-  LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="3.2"; sha256="08jm419cf22z144csif2ndf53743v1xl9zpa6zamd3df2snr59x2"; depends=[data_table maptools rgdal rgeos sp spdep]; };
+  LabourMarketAreas = derive2 { name="LabourMarketAreas"; version="3.2.2"; sha256="16v9vwy7g7vj38pbikrinvhx2b5xdl0vd9i6yr9hhdrgqls0c243"; depends=[data_table maptools rgdal rgeos sp spdep]; };
+  LadR = derive2 { name="LadR"; version="1.0.4"; sha256="04wg7p9whjna1szdkqhy5m2nbqxllwfd9q2s6h85diby7r3akglz"; depends=[L1pack]; };
   Lahman = derive2 { name="Lahman"; version="6.0-0"; sha256="1616iaa28z6wrxcvvmnic5awj33b7km9yxnn8bnll9yw99ks6qk6"; depends=[dplyr]; };
   LakeMetabolizer = derive2 { name="LakeMetabolizer"; version="1.5.0"; sha256="06mvdrdyl0rh9rwd0jxww0sycadcp7cj08hq35q6vyzq0jkxn2xf"; depends=[plyr rLakeAnalyzer]; };
   Lambda4 = derive2 { name="Lambda4"; version="3.0"; sha256="04ikkflfr0nmy1gr3gfldlh2v8mpl82k1wwnzp57d2kn75m9vbxz"; depends=[]; };
@@ -1858,15 +1940,16 @@ in with self; {
   LassoBacktracking = derive2 { name="LassoBacktracking"; version="0.1.2"; sha256="1z1cnj6r6cq3b8xa9qck3ijfmzsr70r2p9m1ndakijb36pgwrzcs"; depends=[Matrix Rcpp]; };
   LassoSIR = derive2 { name="LassoSIR"; version="0.1.1"; sha256="0ap8335ms12nsc7jvd48244zya54w05wj91qkhb0i63730r508c3"; depends=[glmnet]; };
   Laterality = derive2 { name="Laterality"; version="0.9.3"; sha256="0pl5bfbkzhgxjjzzh99s6rh4jsq0pbcgc902i0z2lmmivgs5qmd6"; depends=[ade4]; };
+  LatticeDesign = derive2 { name="LatticeDesign"; version="1.0-1"; sha256="1wlchqa7914401r0mzca4fffps99nfbj0jym1jxkclnjivdgcn24"; depends=[]; };
   LatticeKrig = derive2 { name="LatticeKrig"; version="7.0"; sha256="04waq7dpp86rpa8qgrjbpl72k6vhkd300vxfc1xxy5z7k36pinqh"; depends=[fields spam]; };
   Lavash = derive2 { name="Lavash"; version="1.0"; sha256="0cjl8crk0rdkyzp069fk4k0sapcjmqm3q40z5mgl0i1n59kn4s07"; depends=[glmnet MASS pracma]; };
   LeArEst = derive2 { name="LeArEst"; version="0.2.0"; sha256="1492r6l0azs4ga6ia02bggk1jsx6q6rg05ins9ng6f41h04v6q3m"; depends=[conicfit doParallel foreach jpeg opencpu]; };
   LeLogicielR = derive2 { name="LeLogicielR"; version="1.2.1"; sha256="0jd280ial4wfj5j6sbxgl2cbxabycsgmh2zsad7v7hcwbhhdd09i"; depends=[gdata IndependenceTests RColorBrewer xtable]; };
   LeafArea = derive2 { name="LeafArea"; version="0.1.7"; sha256="0pn6hh9ipr609pi49ls8wxnx7v8q1wyp84i22zzwxyzwaap5nmj2"; depends=[]; };
   LearnBayes = derive2 { name="LearnBayes"; version="2.15.1"; sha256="0ch54v2zz2yyyk0lvn5rfikdmyz1qh9j1wk3585wl8v58mc0h4cv"; depends=[]; };
-  LearnGeom = derive2 { name="LearnGeom"; version="1.3"; sha256="0fqf5k3gsdxwyfcbkypqiq0ir8ay8r9bdy8iljhj308ammq0mxzk"; depends=[RgoogleMaps]; };
+  LearnGeom = derive2 { name="LearnGeom"; version="1.4"; sha256="0qalhy4g47ik8cq2m1zajhv79rla8g72dmcwhnizwn6afhm6fnpm"; depends=[]; };
   LendingClub = derive2 { name="LendingClub"; version="2.0.0"; sha256="13qh5p4ksvgd1pmc4mdp8p44ra34fvp3s5p5vhlkpclkv5d4mxq2"; depends=[dplyr httr jsonlite plyr readr]; };
-  LexisNexisTools = derive2 { name="LexisNexisTools"; version="0.1.2"; sha256="0ziy86l6q01l471lmpldhs48xqlyw1va75np5hkzaq5wapr9pfk4"; depends=[data_table quanteda scales stringdist stringi]; };
+  LexisNexisTools = derive2 { name="LexisNexisTools"; version="0.2.0"; sha256="0va8fq80133cjw37ndfwgndpim8hhk4m1i29gr1lc7phivr8dfvm"; depends=[data_table pbapply quanteda reshape2 scales stringdist stringi tibble]; };
   LexisPlotR = derive2 { name="LexisPlotR"; version="0.3"; sha256="1qdgs6p11j0ign27bbnn32g65sw42982ijrig5cwqsdvxpdabjl8"; depends=[ggplot2]; };
   LiblineaR = derive2 { name="LiblineaR"; version="2.10-8"; sha256="17ykazac7iv02bxl8xg948vhbdr32icdm1v4bk31zmslp4xsk08g"; depends=[]; };
   LiblineaR_ACF = derive2 { name="LiblineaR.ACF"; version="1.94-2"; sha256="1ldkb63yhm1ki8i585wp5byx6y0kvclwy3ncacgcdqqk0p41cyi6"; depends=[]; };
@@ -1880,13 +1963,15 @@ in with self; {
   LindleyR = derive2 { name="LindleyR"; version="1.1.0"; sha256="163i604q683znp6q544hnv4vibygwvsxcfhh8m7iaqr42li3c0ak"; depends=[lamW]; };
   LinearRegressionMDE = derive2 { name="LinearRegressionMDE"; version="1.0"; sha256="0nl29l10y5kpds1i4sv7jwizq61fmh5c0zpj8x64qfif4l6y4v0d"; depends=[]; };
   LinkageMapView = derive2 { name="LinkageMapView"; version="2.1.2"; sha256="101g4djzkxgxbn87an2vz4s9nwn8gwz7a3p3wg0y4zpdd1pdp716"; depends=[plotrix qtl RColorBrewer]; };
-  LinkedMatrix = derive2 { name="LinkedMatrix"; version="1.3.0"; sha256="1p5rg50g1pq700cx9jk4ackiyin5c2nanxq677cn840w6r11vm2g"; depends=[crochet]; };
+  LinkedMatrix = derive2 { name="LinkedMatrix"; version="1.3.1"; sha256="01rsgk2v1r1jhpkvvhgqqa5lf6qncxy56f7jwfgxfig3dvgjf96r"; depends=[crochet]; };
+  LipidMS = derive2 { name="LipidMS"; version="1.0.0"; sha256="0pr41rdpwxmq67k94vm91dddf6gj6r46l9jy0lwqp63f8s0dij3a"; depends=[CAMERA CHNOSZ enviPick purrr]; };
   Lmoments = derive2 { name="Lmoments"; version="1.2-3"; sha256="13p0r4w16jvjnyjmkhkp3dwdfr1gap2l0k4k5jy41m8nc5fvcx79"; depends=[]; };
-  LncFinder = derive2 { name="LncFinder"; version="1.0.0"; sha256="1ygbmazjm2jk0wrd13khpx8rkwd51cb50qxs2zdad0w09705mpsx"; depends=[caret e1071 seqinr]; };
+  LncFinder = derive2 { name="LncFinder"; version="1.1.3"; sha256="15zsll766n97q5rf3xvc3m5s7faxiybayxjzyfhsh7q9x12qnnd7"; depends=[caret e1071 seqinr]; };
   LncMod = derive2 { name="LncMod"; version="1.1"; sha256="08001y7s93i3k3478jqfh9zsgpq6ym1xmdmldi7s76zbfr1nknvy"; depends=[pheatmap survival]; };
-  LncPath = derive2 { name="LncPath"; version="1.0"; sha256="1cihwlj5sv000qg2wa931yx4ca6nixgihjna4g3fh7nr5aiv6cfn"; depends=[igraph samr]; };
+  LncPath = derive2 { name="LncPath"; version="1.1"; sha256="1cpsy681yq96867nr9g75xb0dilb016shqlhxpdn5xyiakrgjl4v"; depends=[igraph]; };
   LocFDRPois = derive2 { name="LocFDRPois"; version="1.0.0"; sha256="0zzdp9wgwr6wn3grimghpj4vq34x37c8bqg8acfzlzih8frqal3r"; depends=[dplyr ggplot2]; };
   LocalControl = derive2 { name="LocalControl"; version="1.1.1"; sha256="1fshqm6ag0scjawf2vn8zz9vrx4fv0shk2qyk60adb1ms85y8rrq"; depends=[cluster gss lattice Rcpp]; };
+  LocalControlStrategy = derive2 { name="LocalControlStrategy"; version="1.3.1"; sha256="0hghj1vpfwxk1w7pc61y5l3jbsp8419nyfa9xviw99m6nyrkpma3"; depends=[cluster lattice]; };
   Lock5Data = derive2 { name="Lock5Data"; version="2.8"; sha256="17awskq78h23z2dy96d7hziljhnkx5phpd48q7cppxidyvzfywim"; depends=[]; };
   Lock5withR = derive2 { name="Lock5withR"; version="1.2.2"; sha256="10x3i11pb4cig4pgfmw9984na5zjbg7d41y6crakiimf53ihx0c2"; depends=[]; };
   LogConcDEAD = derive2 { name="LogConcDEAD"; version="1.6-1"; sha256="1hy7fnahncpsgqxfy352lxk298i69w7drlspsgdvpzdbghca3y3i"; depends=[MASS mclust mvtnorm rgl tkrplot]; };
@@ -1900,24 +1985,25 @@ in with self; {
   LowWAFOMNX = derive2 { name="LowWAFOMNX"; version="1.1.1"; sha256="0f75qsv6pisgvk39yagzfxscnyfsgh63rmhp4gpybpl0pqmjp48x"; depends=[Rcpp RSQLite]; };
   LowWAFOMSobol = derive2 { name="LowWAFOMSobol"; version="1.1.1"; sha256="1ym3i2m1am356di9lcp5nfmxq0np3c4bwsv6bbmf7hg02j7dhwi4"; depends=[Rcpp RSQLite]; };
   LumReader = derive2 { name="LumReader"; version="0.1.0"; sha256="1h2r3c9xkwlnaicn65085bdx7y86ha2fpd5mxirqax5lm6d8lirc"; depends=[gridExtra lattice plotly shiny]; };
-  Luminescence = derive2 { name="Luminescence"; version="0.8.5"; sha256="01fd7hwridcrc0vi8cmj2pvpmbqdgqnh1qjnj7mq6cxcyijzd6sg"; depends=[bbmle data_table httr magrittr matrixStats minpack_lm plotrix raster Rcpp RcppArmadillo readxl shape XML zoo]; };
+  Luminescence = derive2 { name="Luminescence"; version="0.8.6"; sha256="08pgy0pdvafssxmzhnazqvxi4f03qsjidvzv6vrk6r4rfkld5244"; depends=[bbmle data_table httr magrittr matrixStats minpack_lm plotrix raster Rcpp RcppArmadillo readxl shape XML zoo]; };
   M2SMF = derive2 { name="M2SMF"; version="1.0"; sha256="0hf5ckpridi70yv15h0771q1grhqr9c592r87hgba7yh55dqqcq1"; depends=[dplyr MASS]; };
   M3 = derive2 { name="M3"; version="0.3"; sha256="1l40alk166lshckqp72k5zmsgm7s5mgyzxlp11l64mgncjwkw2r3"; depends=[mapdata maps ncdf4 rgdal]; };
-  MADPop = derive2 { name="MADPop"; version="1.1"; sha256="1w2jbiki6d14y32p8a50b8g53m1iva2kgik14yg27z5hx1rwwq97"; depends=[BH Rcpp RcppEigen rstan StanHeaders]; };
-  MAINT_Data = derive2 { name="MAINT.Data"; version="1.2.2"; sha256="12ha0lznk14ijjamp6y30srkvn8y1ppn8k4dvb4b8gaip5zzj0pp"; depends=[MASS mclust miscTools pcaPP Rcpp RcppEigen robustbase rrcov sn]; };
-  MALDIquant = derive2 { name="MALDIquant"; version="1.17"; sha256="047s6007ydc38x8wm027mlb4mngz15n0d4238fr8h43wyll5zy0z"; depends=[]; };
-  MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.11.1"; sha256="1aj6gakhbpis576b264s43w55dhmd5rszj54z910plybxq8hzmir"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; };
+  MADPop = derive2 { name="MADPop"; version="1.1.1"; sha256="07fwzpdkh2ayvx4wkmdr93jql11rf8b31abp0gghmlbysaqnv8gp"; depends=[BH Rcpp RcppEigen rstan StanHeaders]; };
+  MAGNAMWAR = derive2 { name="MAGNAMWAR"; version="2.0.4"; sha256="1asr18byrgy6bkpxpmnkczgr3dam6ymf30lw6izq112krc891bg4"; depends=[ape coxme doParallel dplyr foreach iterators lme4 multcomp plyr qqman seqinr survival]; };
+  MAINT_Data = derive2 { name="MAINT.Data"; version="2.0.0"; sha256="0kp5z0jg266w4mhy1hx52h14dnyhy1fjllw7z473gj4fskikp5gg"; depends=[MASS mclust miscTools pcaPP Rcpp RcppEigen robustbase rrcov sn]; };
+  MALDIquant = derive2 { name="MALDIquant"; version="1.18"; sha256="18nl214xjsxkcpbg79jkmw0yznwm5szyh2qb84n7ip46mm779ha6"; depends=[]; };
+  MALDIquantForeign = derive2 { name="MALDIquantForeign"; version="0.11.5"; sha256="0qyqvmdhk1a7qz6c5jsbf274xahi9zjn2faw0jyk4wbnmfj2shii"; depends=[base64enc digest MALDIquant readBrukerFlexData readMzXmlData XML]; };
   MALDIrppa = derive2 { name="MALDIrppa"; version="1.0.1"; sha256="1y2nr65cvqkvzzjsr3lmpk58lqd5rqvmzjdakhwhw4s6ymggd9hf"; depends=[lattice MALDIquant robustbase signal wmtsa]; };
   MAMS = derive2 { name="MAMS"; version="1.2"; sha256="19w6ydsbr60p1cmizhhmsajzasg76r23x29qcaa7mibcb5gh1yzs"; depends=[mvtnorm]; };
   MAMSE = derive2 { name="MAMSE"; version="0.2-1"; sha256="0spi7fqkxjiw5j0nf7ambcr8kpzdhjzh9y3dk23y1mrk2dgc5dkw"; depends=[]; };
   MANCIE = derive2 { name="MANCIE"; version="1.4"; sha256="0940xl3z5bca6hcnj2bj341l79wajilxlxzmyz3dlgrz0b3bbdmm"; depends=[]; };
-  MANOVA_RM = derive2 { name="MANOVA.RM"; version="0.2.1"; sha256="1pq1mkanp1jxyygw09p4x8cgfbkrks7g6qvzfdjgdy8kli1b3mmw"; depends=[ellipse magic MASS Matrix plotrix plyr]; };
+  MANOVA_RM = derive2 { name="MANOVA.RM"; version="0.3.1"; sha256="0lxqv85hc299r28m5z4id3xdgd2dism1b1zs09qly3i6byndn4gw"; depends=[ellipse magic MASS Matrix multcomp plotrix plyr]; };
   MAPA = derive2 { name="MAPA"; version="2.0.4"; sha256="02s223s58k2jk49m0xlz3q9m3nip3h4dl4v58j18z2vgi54dwnjr"; depends=[forecast RColorBrewer smooth]; };
   MAPLES = derive2 { name="MAPLES"; version="1.0"; sha256="0hzsh7z1k7qazpxjqbm9842zgdpl51irg7yfd119a7b2sd3a8li9"; depends=[mgcv]; };
   MAR1 = derive2 { name="MAR1"; version="1.0"; sha256="1r6j890icl5h3m2876sakmwr3c65513xnsj68sy0y0q7xj3a039l"; depends=[bestglm leaps]; };
   MARSS = derive2 { name="MARSS"; version="3.10.8"; sha256="1cmkish5rbv7lpm8fnv6d33plkfvxis4r4p48bx10fll1ba11m7h"; depends=[KFAS mvtnorm nlme]; };
   MARX = derive2 { name="MARX"; version="0.2"; sha256="1rc87hz719khl8mclbkfdix499nsc4nyihaaavd73nany7iprm02"; depends=[fBasics matlab metRology stabledist tseries]; };
-  MASS = derive2 { name="MASS"; version="7.3-50"; sha256="16hasv9k4n773jsyzvh8s3gbga49hwdj8n5hxij6zqisy4i0kxq6"; depends=[]; };
+  MASS = derive2 { name="MASS"; version="7.3-51"; sha256="0yp5ssfm9mahrp30y1hkqgjg70mzs6w065ba8h7j5ky1z6msdsdy"; depends=[]; };
   MASSTIMATE = derive2 { name="MASSTIMATE"; version="1.3"; sha256="0dsqinl6998jv63m6scljszpi0qb050gj5d4wnp0pcxfs9awi2gj"; depends=[]; };
   MAT = derive2 { name="MAT"; version="2.2"; sha256="093axw2zp4i3f6s9621zwibcxrracp77xrc0q5q0m4yv3m35x908"; depends=[Rcpp RcppArmadillo]; };
   MATA = derive2 { name="MATA"; version="0.3"; sha256="006mnc4wqh9vdigfzrzx4csgczi0idvlwb6r23w5mmsfbn0ysdm5"; depends=[]; };
@@ -1925,9 +2011,9 @@ in with self; {
   MAVE = derive2 { name="MAVE"; version="1.3.8"; sha256="0zr8i21z6c4jwgqdyx7kya8k9016b7fffk4fjjxgas6yg6k2x1la"; depends=[mda Rcpp RcppArmadillo]; };
   MAVIS = derive2 { name="MAVIS"; version="1.1.3"; sha256="02hi3n2rligmgg9afqwkpdny2kl68simkaqdd6k1swzlrih0fs4s"; depends=[compute_es ggplot2 irr MAc MAd metafor quantreg SCMA SCRT shiny shinyAce shinyBS weightr]; };
   MAVTgsa = derive2 { name="MAVTgsa"; version="1.3"; sha256="0rzal9nsi8y873cbf6hrdyzyxnpd4r1yr9fj66cn0s1c8g93ls0y"; depends=[corpcor foreach MASS multcomp randomForest]; };
-  MAc = derive2 { name="MAc"; version="1.1"; sha256="1lshi5rb8l2mpd302wskhlk5vz1wjidvbss9y69l63zjqdwjs7ch"; depends=[]; };
+  MAc = derive2 { name="MAc"; version="1.1.1"; sha256="1dawqmziffaz8wgcqzwc0yifdq65abgn24vafkrwa9850048c26f"; depends=[]; };
   MAclinical = derive2 { name="MAclinical"; version="1.0-5"; sha256="1g0ka1kqww2xim8rp5rznkzn0a541zvf841s3lbphfh9k3y3ixs3"; depends=[e1071 party plsgenomics st]; };
-  MAd = derive2 { name="MAd"; version="0.8-2"; sha256="0mhys27rmzb0kal4jr8j2y44z4qq46fw260sxl8da9qqvplcwq1p"; depends=[]; };
+  MAd = derive2 { name="MAd"; version="0.8-2.1"; sha256="096vdhfsp7bd3zvv6ydai6p230r16jx8zlqc4hlhnzma8rqypm35"; depends=[]; };
   MBA = derive2 { name="MBA"; version="0.0-9"; sha256="06kmrdkhwwvr3kd5w8ws6r528hhpvbhixyj98lv36kkwlx14x06g"; depends=[BH]; };
   MBC = derive2 { name="MBC"; version="0.10-4"; sha256="1fp06xx9jpz5mcxs0yppzzhch9w9c1qbsdbb60r4izrxnrhggpf7"; depends=[energy Matrix]; };
   MBCluster_Seq = derive2 { name="MBCluster.Seq"; version="1.0"; sha256="0xbi2r0g0gzsy05qrq1ljr5f5s3glwxj204vk2f1lgwdx3fd116m"; depends=[]; };
@@ -1936,7 +2022,6 @@ in with self; {
   MBI = derive2 { name="MBI"; version="1.0"; sha256="1lb0sjwa6x360n9a9pagz6yhxh37gxq1fk0f5c3i2sd56ny9jpns"; depends=[]; };
   MBSGS = derive2 { name="MBSGS"; version="1.1.0"; sha256="1h5vhmpgrqza12j7ivhwgd5wyb7kkb8mjbxl5w756vyid8g03flz"; depends=[MASS MCMCpack mgcv mnormt truncnorm]; };
   MBSP = derive2 { name="MBSP"; version="1.0"; sha256="0mds6jfqgmnm4saqqqqqfcg8zh4qsvd2503g3ij1sn70f0aakwaj"; depends=[coda GIGrvg MASS Matrix MCMCpack]; };
-  MBTAr = derive2 { name="MBTAr"; version="1.0.1"; sha256="0zak19pdk0wwkhl4kj1jbwx0qmqcgpmmqv3vk0wg8nwgf1l65idy"; depends=[jsonlite]; };
   MBmca = derive2 { name="MBmca"; version="0.0.3-5"; sha256="0p7ddpsy4hwkfwyyszidi33qpdg4xllny7g9x24gk782p7kjfgq9"; depends=[chipPCR robustbase]; };
   MC2toPath = derive2 { name="MC2toPath"; version="0.0.16"; sha256="0jdn9wpxavn2wrml907v23mfxr62wwjdh7487ihjj59g434ry7wh"; depends=[RNetCDF]; };
   MCAvariants = derive2 { name="MCAvariants"; version="2.0"; sha256="0akff64v49d5r0wvspal0pz17jhz1ry4vdmj47m28gzjj69zcab0"; depends=[]; };
@@ -1948,26 +2033,28 @@ in with self; {
   MCMC_qpcr = derive2 { name="MCMC.qpcr"; version="1.2.3"; sha256="0b9n793spljmsb58jp41vnl9c753xqaw1g4wbi4ax348cvi09jk8"; depends=[coda ggplot2 MCMCglmm]; };
   MCMC4Extremes = derive2 { name="MCMC4Extremes"; version="1.1"; sha256="06p6xdbja7vrdq4vnhybpkmyf4rkaihcmy9sc81sb0h2wa21vcq0"; depends=[evir]; };
   MCMCglmm = derive2 { name="MCMCglmm"; version="2.26"; sha256="0dx3464mihnm8pf2vwr409ca5m7mvm2054x9jigazg66zsd3fxyj"; depends=[ape coda corpcor cubature Matrix tensorA]; };
-  MCMCpack = derive2 { name="MCMCpack"; version="1.4-3"; sha256="0rmz1rr1y7ycxj293hhy72vajbyblnrjgqvc2qgb63xfs5svi8qq"; depends=[coda lattice MASS mcmc quantreg]; };
-  MCMCprecision = derive2 { name="MCMCprecision"; version="0.3.8"; sha256="1qyhxljfcnyj7450vik4j81qilvphwc1b2xv48fnx1pnapfl45wz"; depends=[combinat Matrix Rcpp RcppArmadillo RcppEigen RcppProgress]; };
-  MCMCvis = derive2 { name="MCMCvis"; version="0.11.0"; sha256="099sa541xrskn1jipx16hrgasriv4jy7jgjq9vyjwcagzh2hljz3"; depends=[coda overlapping rstan]; };
+  MCMCpack = derive2 { name="MCMCpack"; version="1.4-4"; sha256="1xzrgib2mjz0xpqranhdyc5m4fmg2fir9mcf51ciw5pp53b97qcp"; depends=[coda lattice MASS mcmc quantreg]; };
+  MCMCprecision = derive2 { name="MCMCprecision"; version="0.3.9"; sha256="1zmlz2kwrp1qiyvq3v5vv1rsy3s2idlifmckmgznk4nkqds5ifwh"; depends=[combinat Matrix Rcpp RcppArmadillo RcppEigen RcppProgress]; };
+  MCMCvis = derive2 { name="MCMCvis"; version="0.11.2"; sha256="1b81sqvmnqmbm363llgrm61zm2yy0d0myzvv28sf6pibjijdznq8"; depends=[coda overlapping rstan]; };
   MCPAN = derive2 { name="MCPAN"; version="1.1-21"; sha256="0q1m0xg8825q9zjwxcz2h2n0dyr21q5bk29qbqpdhirlwm6f1a51"; depends=[magic MCMCpack multcomp mvtnorm plyr]; };
   MCPMod = derive2 { name="MCPMod"; version="1.0-10"; sha256="0ns74qhm9bzi70m9bn61zs4mmqmmxxi77f49pdrcnr8wrrnn1kdn"; depends=[lattice mvtnorm]; };
   MCPerm = derive2 { name="MCPerm"; version="1.1.4"; sha256="0g65vzn43k6qrsglxd2kz245f662gl3c2gdz6qvvxa96v6q9lhh1"; depends=[metafor]; };
   MCS = derive2 { name="MCS"; version="0.1.3"; sha256="1kiz1jq1bm2n8f33nsybp5jfrzzl9xbsi3m9l8818ybmph99xms6"; depends=[]; };
+  MCSim = derive2 { name="MCSim"; version="1.0"; sha256="1nqry41qa5c02an5fxm3y1g3w1vcqjgsy1an95i3szz1w1ndaj14"; depends=[CircStats MASS]; };
   MCTM = derive2 { name="MCTM"; version="1.0"; sha256="14xjfskyrqi0m58lkwjfjpss5j7wy3ajr148n526czrrpccg108j"; depends=[]; };
   MConjoint = derive2 { name="MConjoint"; version="0.1"; sha256="02yik28mhvd4rfqwrprdbdjx9c49ds55fh042bsjajs2ip467w5c"; depends=[]; };
   MDFS = derive2 { name="MDFS"; version="1.0.1"; sha256="17b9lphdgp90vcldlz4p8g1a87pf1d1vg1b8vz8xhn95cb0vr4ci"; depends=[]; };
   MDM = derive2 { name="MDM"; version="1.3"; sha256="1bvjhl243rf19829ly1qc20ik937hb82lq23aiysj7ya55z8hdpf"; depends=[nnet]; };
   MDMR = derive2 { name="MDMR"; version="0.5.1"; sha256="1pv57xl7pjsqxz1j8mnfmjaa36mlr749yb4c44ppdrx6khvw662x"; depends=[car CompQuadForm lme4]; };
   MDPtoolbox = derive2 { name="MDPtoolbox"; version="4.0.3"; sha256="0aaw787fvcyhw6mbl42icgqfdzvfr618vg179984xqifafr40dyc"; depends=[linprog Matrix]; };
-  MDSMap = derive2 { name="MDSMap"; version="1.0"; sha256="15557ca83bvsqcmsa48vispagg9a05658i22cqk706shjsp782n5"; depends=[princurve reshape rgl smacof]; };
+  MDSMap = derive2 { name="MDSMap"; version="1.1"; sha256="0knrkfwgl763fwdb3ln3g5y3rarnpqdfgzxf4m045664m7gkipsg"; depends=[princurve reshape rgl smacof]; };
   MDimNormn = derive2 { name="MDimNormn"; version="0.8.0"; sha256="080m0irx5v8l45fg9ig5yzcj92s3ah8a9aha288byszli1cchgpn"; depends=[]; };
   MDplot = derive2 { name="MDplot"; version="1.0.1"; sha256="1xijh18hrkb807nfkdr7g642aspn5psc8nw29q387jl5hly2w8s9"; depends=[gplots gtools MASS RColorBrewer]; };
   MED = derive2 { name="MED"; version="0.1.0"; sha256="0fy0qmxirkdz5kigy2r7l5czjzws0fhjxy13kv1kqh628ldrp109"; depends=[]; };
   MEET = derive2 { name="MEET"; version="5.1.1"; sha256="02xz2zkwqaf1wck9a3h1j6z8dasw4j0zqa88jg6h10wqzcrlp9ba"; depends=[Hmisc KernSmooth Matrix pcaMethods ROCR seqinr seqLogo]; };
+  MEGENA = derive2 { name="MEGENA"; version="1.3.7"; sha256="0cr10pmj1n831scz5kgaq3nkglr3imwgc62cxng2dvdxr9991g21"; depends=[BH cluster doParallel foreach fpc ggplot2 ggraph ggrepel igraph Matrix Rcpp reshape]; };
   MEMSS = derive2 { name="MEMSS"; version="0.9-2"; sha256="0wyw8yjs4miwgwdfcnfbzvkxrgv5r3jlg3cg8q2vy7s69wvhksmy"; depends=[lme4]; };
-  MEPDF = derive2 { name="MEPDF"; version="1.0"; sha256="171pzhz4z0373663mfnfi5cqd9gnj0aamwr56ag16dxm8xfyppcj"; depends=[MASS plyr pracma]; };
+  MEPDF = derive2 { name="MEPDF"; version="3.0"; sha256="15hbp7g5dsdpvi239jm6jn11fn371ir6la31g0flqkilq6sr1sqd"; depends=[gtools mvtnorm plyr pracma]; };
   MESS = derive2 { name="MESS"; version="0.5.2"; sha256="159vnyyab31s871j5hcqwn1g1zp18ym08jz6jcgiamwn0aprbzny"; depends=[geeM geepack glmnet kinship2 MASS Matrix mvtnorm Rcpp RcppArmadillo]; };
   MEclustnet = derive2 { name="MEclustnet"; version="1.2.1"; sha256="1pznisvvgshqbixyj8jya35yhmmpxxa1ivh48c9iafgapwc4yn4s"; depends=[e1071 ellipse latentnet MASS mclust mvtnorm nnet vegan]; };
   MExPosition = derive2 { name="MExPosition"; version="2.0.3"; sha256="1l27wp0psfvlkk79fhb8ypf8awardjljg1f37yj42friy9pdfksz"; depends=[ExPosition prettyGraphs]; };
@@ -1976,10 +2063,10 @@ in with self; {
   MFDFA = derive2 { name="MFDFA"; version="1.0"; sha256="1gy1v49525i2bhr14nvpz8rqcz3lchfnvm0g53qlln55jdndgsx4"; depends=[]; };
   MFHD = derive2 { name="MFHD"; version="0.0.1"; sha256="0gb8y297y1x03wy46530psmlawyv4z5dydilk36qcmadlk1wx02k"; depends=[deldir depth depthTools fda_usc matrixStats]; };
   MFKnockoffs = derive2 { name="MFKnockoffs"; version="0.9.1"; sha256="1bcdqfzmllp3dri1phy365wgc9c37wlag65pzljn4p3mf43w10nq"; depends=[corpcor glmnet gtools Matrix Rdsdp RSpectra]; };
-  MFPCA = derive2 { name="MFPCA"; version="1.2-3"; sha256="0zhmhk1cihk5h4c0qpcna5m687169qxlanbjc92scwab3q8hs2i9"; depends=[abind foreach funData irlba Matrix mgcv plyr]; };
+  MFPCA = derive2 { name="MFPCA"; version="1.3-1"; sha256="00kr64ih16ymigyd1w5ijkk7clif18dg5fq9g3vd9j773zqg7dh2"; depends=[abind foreach funData irlba Matrix mgcv plyr]; };
   MFT = derive2 { name="MFT"; version="1.3"; sha256="029apjg1fqrqfg98jczbxfy267m3f68qxvxqjzbsw1xisq4j7wc0"; depends=[]; };
   MGL = derive2 { name="MGL"; version="1.1"; sha256="03q453swnangxyc4nvjhzw2zpcy5vp1wpilap5rwymnf0c0xi4j7"; depends=[]; };
-  MGLM = derive2 { name="MGLM"; version="0.1.0"; sha256="06gaz82nn7fbfv7bm9xx6dsk95xq3gircvh6knzm963r1bw8f1pk"; depends=[]; };
+  MGLM = derive2 { name="MGLM"; version="0.2.0"; sha256="0yyqm53lvp59zy8lkffw9x3zhqrnh29j5v3yyzk6qrgj2slnc7nk"; depends=[]; };
   MGRASTer = derive2 { name="MGRASTer"; version="0.9"; sha256="0jmf2900r56v60981sabflkhid3yrqd9xd7crb56vgfl1qkva9zp"; depends=[]; };
   MGSDA = derive2 { name="MGSDA"; version="1.4"; sha256="0grwl740yvz2av5nkvmyyrr8ji5f39sjs1c5gxp6lp9p36i2wc32"; depends=[MASS]; };
   MHCtools = derive2 { name="MHCtools"; version="1.1.0"; sha256="03y6m3a46bzazxkrxdrii2p1fyc26il09z5676c63rk8wz9wcxa0"; depends=[rlist]; };
@@ -1999,13 +2086,14 @@ in with self; {
   MImix = derive2 { name="MImix"; version="1.0"; sha256="033gxr0z2xba0pgckiigblb1xa94wrfmpgv3j122cdynjch44j4r"; depends=[]; };
   MInt = derive2 { name="MInt"; version="1.0.1"; sha256="1nk02baainxk7z083yyajxrnadg2y1dnhr51fianibvph1pjjkl6"; depends=[glasso MASS testthat trust]; };
   MKLE = derive2 { name="MKLE"; version="0.05"; sha256="00hcihjn3xfkzy0lvb70hl2acjkwk6s3y7l4gprix24shnblvxzi"; depends=[]; };
-  MKmisc = derive2 { name="MKmisc"; version="1.0"; sha256="1ykzj9flq1nx8k7aybd2sh5rd8a2hzk4gwz0iqqsl18k1khzbdla"; depends=[ggplot2 RColorBrewer robustbase]; };
-  ML_MSBD = derive2 { name="ML.MSBD"; version="1.0.0"; sha256="1myr4pnznkypb7jjpyr5iv4yh29q9kv6g8gmfh9x3wy96xy15wmz"; depends=[ape]; };
+  MKmisc = derive2 { name="MKmisc"; version="1.1"; sha256="1di9dbfnbi69psk3qnrfnc62amx3ifvirw2bb783y775zpg07gz7"; depends=[ggplot2 RColorBrewer robustbase scales]; };
+  ML_MSBD = derive2 { name="ML.MSBD"; version="1.1.0"; sha256="0r9v6dkfarwzryai53c4z5i5isdh8clgwfpzmjsh430zbf9vkdk2"; depends=[ape]; };
   MLCIRTwithin = derive2 { name="MLCIRTwithin"; version="2.1"; sha256="07fhbhfnlmllxxdpdqiaz6d72y4pj3vrz6lw5rnlb2m7vknx51ik"; depends=[limSolve MASS MultiLCIRT]; };
   MLDS = derive2 { name="MLDS"; version="0.4.5"; sha256="1a5y031kd6zx0zqlk6dvxzsv3isbvg9jap4gqad2jwryh0a9x3c1"; depends=[MASS]; };
   MLEcens = derive2 { name="MLEcens"; version="0.1-4"; sha256="0zlmrcjraypscgs2v0w4s4hm7qccsmaz4hjsgqpn0058vx622945"; depends=[]; };
+  MLGL = derive2 { name="MLGL"; version="0.5"; sha256="020z18x5hlc1v975a7wi6vlairl8w7prjsfsvdiydl6xh56pdrr9"; depends=[FactoMineR fastcluster gglasso MASS Matrix]; };
   MLID = derive2 { name="MLID"; version="1.0.1"; sha256="0ygahmcfbydzic5q3h1ppv5b2ks4lh8mcyfqq27ssmn4g1n6hdvp"; depends=[lme4 nlme]; };
-  MLML2R = derive2 { name="MLML2R"; version="0.2.1"; sha256="055gps9zv8cv08lkf14p22d7r3kidwkwkhfv45xlg6i4fzcgllxb"; depends=[]; };
+  MLML2R = derive2 { name="MLML2R"; version="0.3.0"; sha256="0dwhxb20f6y8daaq5684dzwcl5qpvmbqzlmwa6nkbbchpdcphjhz"; depends=[]; };
   MLPUGS = derive2 { name="MLPUGS"; version="0.2.0"; sha256="1yda37073g640g1qrkjrwa8hbyq6bjlcw3wpznx0bk5h0639bc0s"; depends=[]; };
   MLZ = derive2 { name="MLZ"; version="0.1.1"; sha256="1x2mmd7rb6rk2qb84i7k71w8l14m5dvkwg1xpjqgy9lzqnwhxi45"; depends=[dplyr ggplot2 gplots RcppEigen reshape2 TMB]; };
   MLmetrics = derive2 { name="MLmetrics"; version="1.1.1"; sha256="061129b36h7xqw4zsznik694n8yy9qq6aaqfhdxkhdv8n5v1nzvp"; depends=[ROCR]; };
@@ -2015,6 +2103,7 @@ in with self; {
   MM4LMM = derive2 { name="MM4LMM"; version="1.0.5"; sha256="1kj0kq98fqsfaj2gahn16jnfj86jq1v6jnmcs5ml944yvhmwx5n3"; depends=[Matrix Rcpp RcppEigen]; };
   MMAC = derive2 { name="MMAC"; version="0.1.2"; sha256="1xwz48iizf0lvmhc7krsraabc49ky85qvgr23w4ip6jzfv4sn1jr"; depends=[]; };
   MMDai = derive2 { name="MMDai"; version="1.4.0"; sha256="0bb7hg8fkmzg87xr1b2hxhy75xi461ks6w12z85k4c77kswfpx3b"; depends=[DirichletReg]; };
+  MMDvariance = derive2 { name="MMDvariance"; version="0.0.9"; sha256="1yiqabifym7gdknqrhfnql6qc8p163npzrrckbyqjry3yvkqr5wi"; depends=[Biobase lawstat MASS]; };
   MMMS = derive2 { name="MMMS"; version="0.1"; sha256="1a71vs3k16j14zgqfd4v92dq9swrb44n9zww8na6di82nla8afck"; depends=[glmnet survival]; };
   MMPPsampler = derive2 { name="MMPPsampler"; version="1.0"; sha256="1lk5hh4ihclldrbx2pbfzxvspjaywh7mg6nhs2mjr5dcdj2h0hky"; depends=[cowplot ggplot2 gtools MASS Rcpp RcppArmadillo]; };
   MMS = derive2 { name="MMS"; version="3.0.11"; sha256="0gc4iz371bi65sp49gvjh99f8jvii8l0k12kn1vbpzk4a3cw7iad"; depends=[glmnet Matrix mht]; };
@@ -2023,10 +2112,10 @@ in with self; {
   MNP = derive2 { name="MNP"; version="3.1-0"; sha256="06qs2vsmjs6rcpqlwfc1n5y5hzxf7pngbdmiza1wijm9hh54ikh0"; depends=[MASS]; };
   MNS = derive2 { name="MNS"; version="1.0"; sha256="0if46a6rw0f2d72wnykkaa5z5b1p2c0r43il6cbwbcnnb3zd8acb"; depends=[doParallel glmnet igraph MASS mvtnorm]; };
   MOCCA = derive2 { name="MOCCA"; version="1.3"; sha256="1ffpnqcrkrr7vh0f1fyyai0c2wq3v8sk2qhnhds49z7p6xrsmh21"; depends=[cclust class cluster clv]; };
-  MODIS = derive2 { name="MODIS"; version="1.1.2"; sha256="1iww1rnxv2xw63b5bz7xrxb3q8dmgqzbw704gshislkhjwn37q87"; depends=[bitops devtools mapdata mapedit maps maptools ptw raster RCurl rgdal rgeos sf sp XML]; };
+  MODIS = derive2 { name="MODIS"; version="1.1.4"; sha256="0pyg59z17xmsxiilsamjpxickcp22lwqafqjcahsflg9gm0f0abk"; depends=[bitops curl devtools mapdata mapedit maps maptools ptw raster rgdal rgeos sf sp]; };
   MODISSnow = derive2 { name="MODISSnow"; version="0.1.0.0"; sha256="1p0mil074gapw6v8paw9595rzp85hxrfsc65llh0ljalmacwgx04"; depends=[gdalUtils lubridate raster RCurl]; };
   MODISTools = derive2 { name="MODISTools"; version="1.0.0"; sha256="0b3hdj26f1s07c9k67az3xl82wixzniqaidxz8269grx7vndjmsz"; depends=[httr jsonlite tidyr]; };
-  MODIStsp = derive2 { name="MODIStsp"; version="1.3.5"; sha256="0mk39dvr0msx8xas6zxpzq95bg2whk8r2dc1zggh61rfi9r9d9mn"; depends=[bitops data_table gdalUtils gWidgets gWidgetsRGtk2 httr jsonlite pacman raster rgdal rgeos sp stringr xml2 xts]; };
+  MODIStsp = derive2 { name="MODIStsp"; version="1.3.6"; sha256="1kilv20pknyrgxikcf5jbah2q95g1wdsvld6a9wy41vb4as743z6"; depends=[bitops data_table gdalUtils gWidgets gWidgetsRGtk2 httr jsonlite pacman raster rgdal rgeos sp stringr xml2 xts]; };
   MOEADr = derive2 { name="MOEADr"; version="1.1.0"; sha256="0q0bm13v85raq5hdfpzg4v5kj12zjh31fr1x0zv9g5blxy10dqgy"; depends=[assertthat FNN]; };
   MOJOV = derive2 { name="MOJOV"; version="1.0.1"; sha256="11mcqxw83z4xx29s34v4rsbb3zvyhlb2lmvf97b77n455gsy5hab"; depends=[aod lattice saws survey]; };
   MOLHD = derive2 { name="MOLHD"; version="0.2"; sha256="1lrl24x7iig15jwxigvqm3jdwnxkn948sxmywn6zi2b1a5hqz05k"; depends=[arrangements fields]; };
@@ -2037,7 +2126,9 @@ in with self; {
   MPDiR = derive2 { name="MPDiR"; version="0.1-16"; sha256="10g4dnysjnzf106qibqqcrxz3xw2nfh4ck1n1dlciwahr0f80j13"; depends=[]; };
   MPINet = derive2 { name="MPINet"; version="1.0"; sha256="1zw3piqhhpagg5qahc2xahxxfdwdk8w94aass1virlpl0f52ik8s"; depends=[BiasedUrn mgcv]; };
   MPLikelihoodWB = derive2 { name="MPLikelihoodWB"; version="1.1"; sha256="0xgj349jkv29ldia4lmsiwnkhrk99aqcrvyiy3si5knmi1jvx9q0"; depends=[MASS survival]; };
+  MPN = derive2 { name="MPN"; version="0.1.0"; sha256="1hhdr9c3diy889cw4lnfiv5zy3sqdxfywy2mz58hd3ny2iql5rs1"; depends=[]; };
   MPR_genotyping = derive2 { name="MPR.genotyping"; version="0.8"; sha256="0lsrbks7nhfnrmk8kclh09rc132j3divjxrzjfrg8zijbzkfx1pn"; depends=[qtl]; };
+  MPS = derive2 { name="MPS"; version="2.3.0"; sha256="0rr66f3ijzvqzj6b0hl7i065r5ndzcb2r5sjhx32rihgjdg60lr3"; depends=[]; };
   MPSEM = derive2 { name="MPSEM"; version="0.3-4"; sha256="0pj3gv2waxg5v1xv0qcwscq2c0g5w4w2b9ip3b761gs75mdy07g0"; depends=[ape MASS]; };
   MPTinR = derive2 { name="MPTinR"; version="1.11.0"; sha256="1pflypcysc43yp4rh1lxnf7f0qklc6rl4y1mvj6ydwv5nlz52mbh"; depends=[Brobdingnag numDeriv Rcpp RcppEigen]; };
   MPV = derive2 { name="MPV"; version="1.53"; sha256="14qnvcqqscd9hwn2mxf5dclv3ncj7w6vc3blxaml3rflriha6rls"; depends=[]; };
@@ -2046,8 +2137,11 @@ in with self; {
   MRCE = derive2 { name="MRCE"; version="2.1"; sha256="12q7mqn2qkgv992df71k1xmli61khhbfm7lw0n7z2l7qqldpiw1n"; depends=[QUIC]; };
   MRCV = derive2 { name="MRCV"; version="0.3-3"; sha256="0m29mpsd3kackwrawvahi22j0aghfb12x9j18xk4x1w4bkpiscmf"; depends=[tables]; };
   MRFA = derive2 { name="MRFA"; version="0.2"; sha256="1ld9bchldx4y8g0zp2nr6r439f9vqy5xcr9bkv4g4vphm2c5zq72"; depends=[fields foreach glmnet grplasso plyr randtoolbox]; };
+  MRFcov = derive2 { name="MRFcov"; version="1.0.35"; sha256="05x69gh21jxh49l2pbjkw4i30psf4wx3vpi0m0bi9vsaq7qjczrr"; depends=[caret dplyr ggplot2 glmnet gridExtra igraph magrittr Matrix mgcv pbapply plyr purrr reshape2 sfsmisc]; };
   MRH = derive2 { name="MRH"; version="2.2"; sha256="1icwlq8js58g9fkiq7fwjg8r97ca47xl3dscnhnga99gkgsfgjwl"; depends=[coda KMsurv survival]; };
+  MRHawkes = derive2 { name="MRHawkes"; version="1.0"; sha256="0qhwm708jijv1w6iml18bg7fc2igdcmydwpb9dzpa4gwwads8b78"; depends=[IHSEP]; };
   MRMR = derive2 { name="MRMR"; version="0.1.4"; sha256="0dgbhlynaaka7mdzl6igwgcdzvy6cm2y8mbxaf9pfla8w3z8y0lq"; depends=[ggplot2 lmtest lubridate plyr reshape2]; };
+  MRPC = derive2 { name="MRPC"; version="2.0.0"; sha256="1gy755y2xq9fdnbgwxi32l4abyirm8q9pqwbk8rrc2c26nhdi5fb"; depends=[bnlearn compositions dynamicTreeCut fastcluster GGally graph gtools Hmisc mice network pcalg Rgraphviz sna WGCNA]; };
   MRQoL = derive2 { name="MRQoL"; version="1.0"; sha256="0isn4g3jpz7wm99ymrshl6zgkb7iancdzdxl2w98n8fbxsh5z6sw"; depends=[]; };
   MRS = derive2 { name="MRS"; version="1.2.4"; sha256="1sksg70zb72ys1b7vi8amjaqarmdh8vf2l1rb0rasrlvrip3z3br"; depends=[igraph Rcpp RcppArmadillo]; };
   MRSP = derive2 { name="MRSP"; version="0.4.3"; sha256="0zv22xiq3qh9x3r2ckkvq1vv0vkcirh8y87053bqvw1m20j7q1by"; depends=[Formula matrixcalc]; };
@@ -2055,21 +2149,24 @@ in with self; {
   MRsurv = derive2 { name="MRsurv"; version="0.2"; sha256="148myzk6r8whkpv1yv59dmdlr2n8vdwmaww165aw696xfjxwq550"; depends=[mvtnorm survival]; };
   MRwarping = derive2 { name="MRwarping"; version="1.0"; sha256="13bcs7rlm4irx7yzdnib558w9014a4chh9xwc010m6pxvxv36qnv"; depends=[boa SemiPar]; };
   MSCMT = derive2 { name="MSCMT"; version="1.3.3"; sha256="1962lc6p5cy8pkbshzbl3jnd2pqnk9afs4lmp4qb7fqkmb4xpka3"; depends=[ggplot2 lpSolve lpSolveAPI Rdpack Rglpk]; };
+  MSEtool = derive2 { name="MSEtool"; version="1.1.0"; sha256="0cckn56n8zn7srhzi6bczlg2i4qhfws43nwzjbc3har07n4h56sj"; depends=[coda corpcor DLMtool gplots MASS mvtnorm pryr r4ss RcppEigen reshape2 snowfall TMB]; };
   MSG = derive2 { name="MSG"; version="0.3"; sha256="181kzkbw69bs3vir6dzgq7jzp8xcpg1p4isfb660vgnd1flb03ix"; depends=[RColorBrewer]; };
   MSGARCH = derive2 { name="MSGARCH"; version="2.3"; sha256="0dax3cx0dzmg086vhymnm5x5s7ljdnxx1k52xnnvrm6pprhdgaqn"; depends=[coda expm fanplot MASS numDeriv Rcpp RcppArmadillo zoo]; };
   MSGLasso = derive2 { name="MSGLasso"; version="2.1"; sha256="1k17vnvzr647pwfbdxrpqcsp34iygq86wf0ns4rq8cj6q5mik1bv"; depends=[]; };
   MSIseq = derive2 { name="MSIseq"; version="1.0.0"; sha256="1v2why1k6pjsc04044nr74571p7541nciq7xkzmya3jq6dw878j3"; depends=[IRanges R_utils rJava RWeka]; };
+  MSMwRA = derive2 { name="MSMwRA"; version="1.3"; sha256="0b0fqfv6iick1brqik4rqz2936nfa51i6xlfavs65r9692wks73q"; depends=[]; };
+  MSPRT = derive2 { name="MSPRT"; version="1.0"; sha256="1ciiqfqpl25xvyrfp005gnkxildqkxsnzmb2slxnr8h1an0clb2g"; depends=[doParallel foreach ggplot2 iterators nleqslv]; };
   MSQC = derive2 { name="MSQC"; version="1.0.2"; sha256="11wcy04cpjlnc71s2svs4lm1cp718dz1p4a1603x6zwpbf22bygn"; depends=[rgl]; };
   MST = derive2 { name="MST"; version="2.1"; sha256="16mnsn2an02k4jrqb6yj0n1i563zny5v10ngfq1y28fqaw6h8yyq"; depends=[Formula MASS partykit survival]; };
-  MSbox = derive2 { name="MSbox"; version="1.1"; sha256="0hal7cqfmmcsckysxnwr2qsa2b61ck4zgbdl52w1iqkkvm8qq1x9"; depends=[stringr]; };
+  MSbox = derive2 { name="MSbox"; version="1.1.1"; sha256="1bw1c6yf3lnvd0rb3nwcrq3yckwnnrvck96mdq64njjldap8i152"; depends=[magick stringr xml2]; };
   MScombine = derive2 { name="MScombine"; version="1.1"; sha256="0kgz1l4jlhcada3fp02dscf4zx6a22cjxj251838lfz65f512hrn"; depends=[plyr]; };
   MSeasy = derive2 { name="MSeasy"; version="5.3.3"; sha256="191mvg1imxfjlnd808ypn4lsjx7n6ydf16flax79hv01z7rcjylh"; depends=[amap cluster clValid fpc mzR xcms]; };
   MSeasyTkGUI = derive2 { name="MSeasyTkGUI"; version="5.3.3"; sha256="0ihz8vr2wbgy88bzssilgvlhkbr13jznfjvnqy73wpchqgwy0wy6"; depends=[MSeasy]; };
-  MSwM = derive2 { name="MSwM"; version="1.3"; sha256="1ny7rzpq6x6yy0iz3ad51vwdh7i4sy60pvgdxda3jcz5wal3hgqm"; depends=[nlme]; };
+  MSwM = derive2 { name="MSwM"; version="1.4"; sha256="1zhfar02s7hm4gjs1flkh9a4526d98hik8bqrksy75758baiqg7l"; depends=[nlme]; };
   MTA = derive2 { name="MTA"; version="0.1.2"; sha256="1149xjq6ybjv6llzlq67j5xc6dspb4mvd72n62nlbq3zz80x7f84"; depends=[igraph rgeos sp]; };
   MTDrh = derive2 { name="MTDrh"; version="0.1.0"; sha256="0ass3b90nr4i0y7v30hk8xhq3hj9bxaxcsr4f8wfi0lnvzfv6aaa"; depends=[]; };
   MTE = derive2 { name="MTE"; version="1.0.0"; sha256="009mrl9dgxafl4hrgfzvsfvgx3dljb0rbbs74j2cxc5ray87kp55"; depends=[parcor quantreg]; };
-  MTS = derive2 { name="MTS"; version="0.33"; sha256="0i7kpgsw56vvgrdgddn83i9lzjlb72z4llffqai29qq0m1i7hm65"; depends=[fGarch mvtnorm Rcpp]; };
+  MTS = derive2 { name="MTS"; version="1.0"; sha256="09pypanjmqrvxbrrckydxyyswsgjx4nhb052x4llk7va9w4lbcjs"; depends=[fBasics fGarch mvtnorm Rcpp]; };
   MTSYS = derive2 { name="MTSYS"; version="1.2.0"; sha256="04dkan3hxl3difflskp7d1lw1bvxhg4s28ssy2v4m7z7wbpj3v1m"; depends=[]; };
   MTurkR = derive2 { name="MTurkR"; version="0.8.0"; sha256="0q498chr2s67ai7lfxi6kdficqbs5sxj9asyv69z2a37fmsr4va7"; depends=[base64enc curl digest XML]; };
   MTurkRGUI = derive2 { name="MTurkRGUI"; version="0.1.5"; sha256="1rlgz80na0v1nx70cda1fzyswlb1lg5kcx64zl9dcqy6accsrpmp"; depends=[curl MTurkR XML]; };
@@ -2079,15 +2176,17 @@ in with self; {
   MVB = derive2 { name="MVB"; version="1.1"; sha256="0an8b594rknlcz6zxjva6br8f34sgwdi2jil3xh1xzb5fa55dw0f"; depends=[Rcpp RcppArmadillo]; };
   MVLM = derive2 { name="MVLM"; version="0.1.4"; sha256="1zcj405dc4jbiqw6p0fcbam8yc9d6yjpmrx5wjw5zjvig3iqb91k"; depends=[CompQuadForm]; };
   MVN = derive2 { name="MVN"; version="5.5"; sha256="05jl9g7jyx6a5fc8bw5si393s7f9swygma8h461v8abqbakihb2q"; depends=[boot energy kableExtra magrittr MASS moments mvoutlier nortest plyr psych robustbase]; };
-  MVR = derive2 { name="MVR"; version="1.32.1"; sha256="03dbd5nib8cx0rwdi4g9fihbkdxazpvbdjh7sfnavsyyrgnqa31m"; depends=[statmod]; };
+  MVNBayesian = derive2 { name="MVNBayesian"; version="0.0.8-11"; sha256="1iaxyp480v91887cn4w3l74907wvbzs3ay4cjgzd8xk2dp47w8bg"; depends=[mvtnorm plyr]; };
+  MVR = derive2 { name="MVR"; version="1.33.0"; sha256="1ygz47a2p5r5axql5zsxvsn25pcqyxz6mpw50zfmzrcqdrfa3bg8"; depends=[statmod]; };
   MVT = derive2 { name="MVT"; version="0.3"; sha256="0vinlv3d5daf8q7pd9xgs51nxz2njgdba5750vygmv883srlzi9d"; depends=[]; };
   MVar = derive2 { name="MVar"; version="2.0.2"; sha256="0h1sm2vzjg86v3sv43pbf9fxjx5d6bxx519aa25y0r27nh9fif5y"; depends=[]; };
   MVar_pt = derive2 { name="MVar.pt"; version="2.0.2"; sha256="0b7qgfa180vv2m6l5vqxqc96700srdzzix2kwccfvjimby522a1b"; depends=[]; };
   MVisAGe = derive2 { name="MVisAGe"; version="0.2.1"; sha256="1plrzzj7cr2hxk1npadvjnk7sanhilh99l5vrkjjh3l6li2ym09b"; depends=[]; };
   MWLasso = derive2 { name="MWLasso"; version="1.3.1"; sha256="11lyk46lmjcd60q0mixi41b8ybjgyp1xi18g3ag4450xyhw3r17s"; depends=[]; };
   MWRidge = derive2 { name="MWRidge"; version="1.0.0"; sha256="17kvs9npr1ff24z3pv9x2qnfwyy6w3hc7hm60ynzbjlk2rr11xr9"; depends=[glmnet]; };
-  MXM = derive2 { name="MXM"; version="1.3.5"; sha256="0pmv6qya38kxsys39qzdgh7zqjz7i052f25xmqwc5fa4l08jmm6a"; depends=[bigmemory doParallel dplyr energy foreach geepack hash knitr lme4 MASS nnet ordinal quantreg relations Rfast survival visNetwork]; };
+  MXM = derive2 { name="MXM"; version="1.4.0"; sha256="1zbmysr2krkyzhnj46lc4grp1ram8axr2lkmwjsk5rv6mc1v2dfn"; depends=[bigmemory coxme doParallel dplyr energy foreach geepack knitr lme4 MASS nnet ordinal quantreg relations Rfast survival visNetwork]; };
   MaXact = derive2 { name="MaXact"; version="0.2.1"; sha256="1n7af7kg54jbr09qk2a8gb9cjh25cnxzj2snscpn8sr8cmcrij0i"; depends=[mnormt]; };
+  MachineShop = derive2 { name="MachineShop"; version="0.1-1"; sha256="1clina395wf9xfnfql38wmcd2m8mqg8llgraw152flqgq04k9dh4"; depends=[abind foreach ggplot2 Hmisc irr kernlab magrittr MLmetrics ModelMetrics party recipes rsample survival survivalROC]; };
   Maeswrap = derive2 { name="Maeswrap"; version="1.7"; sha256="0cnnr5zq7ax1j7dx7ira7iccqppc6qpdjghjarvdb2zj0lf69yyb"; depends=[geometry lattice rgl stringr]; };
   MakefileR = derive2 { name="MakefileR"; version="1.0"; sha256="1pfjic2lsar8ghbb6byr4rqrs30qrgfih092z4rxdpsiwkk3y7l1"; depends=[magrittr]; };
   Mangrove = derive2 { name="Mangrove"; version="1.21"; sha256="1qf3fjzf0sb6fqbfdbxwbw6wah3gg2qran4mgg13hcmk4n3j0hxp"; depends=[]; };
@@ -2095,7 +2194,7 @@ in with self; {
   ManlyMix = derive2 { name="ManlyMix"; version="0.1.14"; sha256="0zpcc74965n435d4fah41r9nz0kjyn46hkjl1s0kvlllqj6n69wg"; depends=[]; };
   ManyTests = derive2 { name="ManyTests"; version="1.2"; sha256="1mi7wvnkcd95126f1h8vl8skn397yd2zqvcswprqar54p161wgyi"; depends=[]; };
   Map2NCBI = derive2 { name="Map2NCBI"; version="1.1"; sha256="19gafyql767f1p4fxdw7d5a8z1b4vg7jfrvzaml5x16fj6c78fjm"; depends=[]; };
-  MapGAM = derive2 { name="MapGAM"; version="1.1"; sha256="0sh7qnzzahaz09nmld5p8df93my6k5vpvgmvqdlz84vghcfbfpa2"; depends=[colorspace gam maptools sp survival]; };
+  MapGAM = derive2 { name="MapGAM"; version="1.2"; sha256="1909l0b5yf6c0ri8aylarkjmjnh16cjf1a4plc95yrkjk4y0ckvl"; depends=[colorspace gam maptools sp survival]; };
   MareyMap = derive2 { name="MareyMap"; version="1.3.4"; sha256="1wap0syzgd0w3xla2x4bcasn8zzlj63r5yyf9r479nvifjxdqxzz"; depends=[tkrplot]; };
   MargCond = derive2 { name="MargCond"; version="1.0.0"; sha256="07qh1lgy8ds11cwlb4rxkl6aiph91zq29sy27b8wwxalycdgjrg8"; depends=[gee lme4 MASS Matrix]; };
   MarginalMediation = derive2 { name="MarginalMediation"; version="0.5.1"; sha256="1v7ly1yaglyh257b1q4vc7sfrk41lb4ar9dpwf5ppap581pgpz3f"; depends=[boot magrittr purrr]; };
@@ -2113,26 +2212,27 @@ in with self; {
   Matrix_utils = derive2 { name="Matrix.utils"; version="0.9.7"; sha256="1x64r4aj3gy1dzjjysyrk1j9jq3qsnyrqws8i6bs7q8pf6gvr7va"; depends=[grr Matrix]; };
   MatrixCorrelation = derive2 { name="MatrixCorrelation"; version="0.9.2"; sha256="0s4gxgl6fsy0fnjmsdz4k7p96vl6p00xl9w2fg7v0gikjpz6h5bg"; depends=[plotrix pracma progress Rcpp RcppArmadillo RSpectra]; };
   MatrixEQTL = derive2 { name="MatrixEQTL"; version="2.2"; sha256="1205jxx5aj783r2dmpawiq4rr30b60fq1qf053i7wylw07pz6vba"; depends=[]; };
-  MatrixLDA = derive2 { name="MatrixLDA"; version="0.1"; sha256="19q6wl8fc6jzn7544qnlpzfh9v0xlg9cr78l6k8kx6kzjnbnyh9z"; depends=[glasso plyr Rcpp RcppArmadillo]; };
+  MatrixLDA = derive2 { name="MatrixLDA"; version="0.2"; sha256="0fixq35gp0fzmin75sfld2ln0zvnjgzrhk3b5yi7wdqzp99200yy"; depends=[glasso plyr Rcpp RcppArmadillo]; };
   MatrixModels = derive2 { name="MatrixModels"; version="0.4-1"; sha256="0cyfvhci2p1vr2x52ymkyqqs63x1qchn856dh2j94yb93r08x1zy"; depends=[Matrix]; };
-  MaxPro = derive2 { name="MaxPro"; version="3.1-2"; sha256="1y2g8a8yvzb24dj0z82nzfr6ylplb9sbi2dmj7f3pb4s3yr5zm8y"; depends=[nloptr]; };
+  MaxPro = derive2 { name="MaxPro"; version="4.1-2"; sha256="19a2wp93kx1wkbzd5bvljbm1rr96gr14w4fb0ppbgr2y2a4g8i1v"; depends=[nloptr]; };
   MaxSkew = derive2 { name="MaxSkew"; version="1.1"; sha256="0x5x0jpvhp189jnmgh6d1h3ya0dicj5qfcrgr2fhp1v8jjhl125m"; depends=[]; };
   MaxentVariableSelection = derive2 { name="MaxentVariableSelection"; version="1.0-3"; sha256="1cmxfdkm5k85b4ivlfy5521hkfj0gq2pb1qlxxklh0fprw87kp9c"; depends=[ggplot2 raster]; };
-  MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.5.2"; sha256="0k64yzn7qnjxkxxqg5yrgq1ksdp37qfx0yc8a2n1zrdwj9f9ba2i"; depends=[dplyr lubridate rgdal rgeos rmapshaper rvest sp stringr xml2]; };
-  MazamaWebUtils = derive2 { name="MazamaWebUtils"; version="0.1.5"; sha256="065l1n2nr5jsc0mdlxj10plzp8m09025hzbd8if3pn6gsl520b6l"; depends=[dplyr futile_logger stringr webutils]; };
+  MazamaCoreUtils = derive2 { name="MazamaCoreUtils"; version="0.1.1"; sha256="007m6irbkmgzaraghwg9gq5rv0vhn19dlg2vi02bs1b6h3s63wix"; depends=[dplyr futile_logger lubridate stringr]; };
+  MazamaSpatialUtils = derive2 { name="MazamaSpatialUtils"; version="0.5.4"; sha256="0kwwnki9f67ma6dislf0h17c0jrlqm0n8qhfi0w7g129k820i33s"; depends=[dplyr lubridate rgdal rgeos rmapshaper rvest sp stringr xml2]; };
+  MazamaWebUtils = derive2 { name="MazamaWebUtils"; version="0.1.7"; sha256="16k6wxwjkdwzx1cqcxpxwaj7i63khly90gyiyfw13di43h8cvsd1"; depends=[dplyr futile_logger lubridate mime stringr webutils]; };
   McSpatial = derive2 { name="McSpatial"; version="2.0"; sha256="18nmdzhszqcb5z9g8r9whxgsa0w3g7fk7852sgbahzyw750k95n4"; depends=[lattice locfit maptools quantreg RANN SparseM]; };
   Mcomp = derive2 { name="Mcomp"; version="2.8"; sha256="1wz5fr3dhxn4s0qvxm2mzq9dbz3x0vgh6pixjrgk9d4i9w2p7s60"; depends=[forecast ggplot2]; };
   MeanShift = derive2 { name="MeanShift"; version="1.1-1"; sha256="02zf27xvk2zlmgxfyl5pwl2rdq8c30fb52x1mbpvlhmxjbhg6fsn"; depends=[wavethresh]; };
   MedDietCalc = derive2 { name="MedDietCalc"; version="0.1.0"; sha256="1gggia97ww4kiqhh2lnsmadgdxvpr36mdx1yrbgarj0sp6ilrd3l"; depends=[]; };
   MedOr = derive2 { name="MedOr"; version="0.1"; sha256="1rwc14s16lnzgb78ac2017hv9pss7zw7nw3y7vrvq1qx4fgiw6f8"; depends=[]; };
   MediaK = derive2 { name="MediaK"; version="1.0"; sha256="19cmxl2wksw9kvjsfn1m4nkr5gpcx6bk0sqrabj1n0dla1l32v2a"; depends=[Rcpp RcppEigen]; };
-  Mediana = derive2 { name="Mediana"; version="1.0.6"; sha256="0cx2bkz5m96dirqknfsi9944rhnn14wwdimw1hq1p8c073z40i7a"; depends=[doParallel doRNG foreach MASS mvtnorm survival]; };
+  Mediana = derive2 { name="Mediana"; version="1.0.7"; sha256="136yzp8c9yiiw0x8y3ym516sxx36ca3wa945xmhjwkbvz33cc22j"; depends=[doParallel doRNG foreach MASS mvtnorm survival]; };
   Mega2R = derive2 { name="Mega2R"; version="1.0.4"; sha256="1c51bway05rqywvw05022cjlqzciidqz9xwz17iwf536gndc348p"; depends=[AnnotationDbi DBI gdsfmt GenomeInfoDb pedgene Rcpp RSQLite SKAT]; };
   MendelianRandomization = derive2 { name="MendelianRandomization"; version="0.3.0"; sha256="1nnj4nmzrvdj2arq74bg5ckhmll2z9ydnd75ds48njbhxla2645l"; depends=[ggplot2 iterpc knitr Matrix plotly rmarkdown robustbase]; };
   MenuCollection = derive2 { name="MenuCollection"; version="1.2"; sha256="0v3flicfnln9qld150yk3rfldvsr4dllhq80l02n1lq6px38nf2s"; depends=[gplots RGtk2 RGtk2Extras]; };
   MergeGUI = derive2 { name="MergeGUI"; version="0.2-1"; sha256="1hx03qv5jyjjmqdvylc3kz5dl5qsdqwlirjbrnxrw7grkgkhygap"; depends=[cairoDevice ggplot2 gWidgetsRGtk2 rpart]; };
   MetABEL = derive2 { name="MetABEL"; version="0.2-0"; sha256="0rqjv85mgswrbbp8b8ip6cdmz0cvfy9lm5mcr8a7h38rzgx3g3i3"; depends=[]; };
-  MetFns = derive2 { name="MetFns"; version="3.2.0"; sha256="1nm7yv0cl0kl9dn284fja8a9lf77a2xaqv6v53b2f9sravj5pkfv"; depends=[astroFns lubridate plotrix pracma]; };
+  MetFns = derive2 { name="MetFns"; version="3.2.2"; sha256="15fd2d0yysibi2x43qv6b8i1pa18l7z4n0zpmrqhsmvqkgy8sla0"; depends=[astroFns lubridate plotrix pracma]; };
   MetNorm = derive2 { name="MetNorm"; version="0.1"; sha256="0vfi3k0yp2dz47gwj1n1avs3ji0a2nlrrljz5d0l66zfh4474jb4"; depends=[]; };
   MetProc = derive2 { name="MetProc"; version="1.0.1"; sha256="1z6538pij1rq5wv9s8rjcn0sck15y26asv4vamav8a6s4135ia3q"; depends=[fastcluster gplots]; };
   MetSizeR = derive2 { name="MetSizeR"; version="1.1"; sha256="11hdmpvnszr6pn9ihb3zjy9miksz1fs4piry153z4dic8pjydkax"; depends=[cairoDevice gWidgets gWidgetsRGtk2 MetabolAnalyze mvtnorm]; };
@@ -2140,14 +2240,15 @@ in with self; {
   MetaAnalyser = derive2 { name="MetaAnalyser"; version="0.2.1"; sha256="0k58325nb7svihhpga7kdbryr9bi5470qsb8aa5llpiggs8j7sfz"; depends=[DT ggvis rstudioapi shiny]; };
   MetaComp = derive2 { name="MetaComp"; version="1.1.2"; sha256="1yb115qdmf5rxmjl4y7qr0i6668n46scs4yjpfq9bmy3w9i4ji1x"; depends=[Cairo data_table dplyr ggplot2 plyr reshape2]; };
   MetaCycle = derive2 { name="MetaCycle"; version="1.1.0"; sha256="1kzdk21xpbvwibs8501zwdb9lzj7g5nv2zqaskg9x0szshhg8vpp"; depends=[gnm]; };
-  MetaIntegrator = derive2 { name="MetaIntegrator"; version="1.0.3"; sha256="0611k497ixy0f51lmqzs08zqqq5krrxrm7m0xqdl18gkwrw3w656"; depends=[Biobase DBI GEOmetadb GEOquery ggplot2 gplots multtest preprocessCore reshape rmeta Rmisc RMySQL RSQLite stringr]; };
+  MetaIntegrator = derive2 { name="MetaIntegrator"; version="2.0.0"; sha256="1hsv1ci0a4gjwbfs1h0lxw5sczpk7hl5ws5016zry26cyvf75gzl"; depends=[AnnotationDbi Biobase boot COCONUT data_table DBI dplyr DT GEOmetadb GEOquery ggplot2 ggpubr gplots HGNChelper magrittr manhattanly Metrics multtest pheatmap plyr pracma preprocessCore readr reshape2 rmarkdown rmeta Rmisc RMySQL ROCR RSQLite snplist stringr zoo]; };
   MetaLandSim = derive2 { name="MetaLandSim"; version="1.0.4"; sha256="1dflmm59p4dkrs8iad4b4sc9qcv0x8707irf62mznczlg4mrni4z"; depends=[coda e1071 fgui googleVis igraph knitr maptools minpack_lm raster rgeos rgrass7 sp spatstat zipfR]; };
   MetaLonDA = derive2 { name="MetaLonDA"; version="1.1.0"; sha256="0pmbq6f5dqq29h56wsrnq3nyk5s281jc8vh89h2wkbj9djay4bw0"; depends=[caTools DESeq2 doParallel edgeR ggplot2 gss metagenomeSeq plyr]; };
   MetaPCA = derive2 { name="MetaPCA"; version="0.1.4"; sha256="14g4v3hyxnds4l2q36mpz282yqg8ahgdw3b0qmj0xg17krrf5l2s"; depends=[foreach]; };
   MetaPath = derive2 { name="MetaPath"; version="1.0"; sha256="1vvpfv6yc4rd4apqfs2yzm97xxsv43ghwqnjq6w1xrc4pdx2p634"; depends=[Biobase genefilter GSEABase impute]; };
   MetaQC = derive2 { name="MetaQC"; version="0.1.13"; sha256="11595ggjr46z6xiwmhiyx1sydaq68l18y7mgdwxsg81g03ck9x1r"; depends=[foreach iterators proto]; };
   MetaSKAT = derive2 { name="MetaSKAT"; version="0.60"; sha256="13qffirv0lnj0bflzjpr2hd0d8j4bkakyfjvicp40f0v4v3cack2"; depends=[SKAT]; };
-  MetaSubtract = derive2 { name="MetaSubtract"; version="1.42"; sha256="070j46fp0kb5g9iyd7x4nnaqi1sqxsly3fmka361nzik4pr2x8a3"; depends=[]; };
+  MetaStan = derive2 { name="MetaStan"; version="0.0.1"; sha256="1byxgap5ky8z7mi7cpgv1lkm3xpc9g3pgkhcdcazx5sv4dj6rimf"; depends=[BH Rcpp RcppEigen rstan rstantools StanHeaders]; };
+  MetaSubtract = derive2 { name="MetaSubtract"; version="1.43"; sha256="15xjlzzjyx581kfr33jkn7gw6pnwrd1j7ic28425wzdigm8ym6h4"; depends=[]; };
   MetaboList = derive2 { name="MetaboList"; version="1.2"; sha256="15wkj29s1mxi1wzqzlh8lkr5jkw15dbc37h3hzsc0r72a3ddzf38"; depends=[enviPick]; };
   MetaboQC = derive2 { name="MetaboQC"; version="1.0"; sha256="1hm0ndwda1ciyyg8igkpaalvvdyd7aq5wnl9gzza8fr1l9fxp4a2"; depends=[plyr]; };
   MetabolAnalyze = derive2 { name="MetabolAnalyze"; version="1.3"; sha256="0cl76x6imx4a95wd74xx5s8i2vg8wq3inqgakvgzmkwxad6qhrqp"; depends=[ellipse gplots gtools mclust mvtnorm]; };
@@ -2160,21 +2261,22 @@ in with self; {
   MethodCompare = derive2 { name="MethodCompare"; version="0.1.0"; sha256="0zl20v8k8bhn3skbpzdiglywrqghwf0r42q2jn8zmq4x0drvjzpl"; depends=[nlme]; };
   Methplot = derive2 { name="Methplot"; version="1.0"; sha256="0aaqss9zfn55qi45jffxkksnkw510npjnkygafx49vl77bkagqh5"; depends=[ggplot2 reshape]; };
   MethylCapSig = derive2 { name="MethylCapSig"; version="1.0.1"; sha256="16ch9aldr6a9jn42h387n7qvnzs0yx28f2yj6xq0kp476q7rf4ql"; depends=[geepack]; };
-  Metrics = derive2 { name="Metrics"; version="0.1.3"; sha256="1mpqbi1lihxgndfpm8b6c5hiibvnscz1b5xjgi16x2fqk3cz4i0z"; depends=[]; };
+  Metrics = derive2 { name="Metrics"; version="0.1.4"; sha256="0fh8qbjlwzagh272lgwr4bxcqcjb1qpz53mgs8rzlvncax6nk5bk"; depends=[]; };
   MfUSampler = derive2 { name="MfUSampler"; version="1.0.4"; sha256="0i5siq1jacxbfvakb97qnj3h7pk471rrx8ckwm0d8nl3j586s36y"; depends=[ars coda HI]; };
   MiRAnorm = derive2 { name="MiRAnorm"; version="1.0.0"; sha256="154wv0j82xyc4y5cd2czh0q8kzhgrk6qsn0ahc1zn3fnrzc9fgz0"; depends=[ArgumentCheck cluster dendextend ggplot2 MASS npmv plyr reshape2]; };
   MiRKAT = derive2 { name="MiRKAT"; version="1.0.1"; sha256="1adhy9ysjm8xa45sb4x17ryznvg91c9xdf0irpcgc7rbg34rxf5x"; depends=[GUniFrac MASS PearsonDS survival]; };
   MiRSEA = derive2 { name="MiRSEA"; version="1.1"; sha256="0jpl6ws5yx1qjzdnip9a37nmvx81az4cbsjm57x613qjpwmg6by3"; depends=[]; };
   MiSPU = derive2 { name="MiSPU"; version="1.0"; sha256="1l6q0fm5z5i6gigr940h8kc5rka08psmhcprp8grmsxk3qy2kply"; depends=[ape aSPU cluster Rcpp RcppArmadillo vegan]; };
   MiST = derive2 { name="MiST"; version="1.0"; sha256="0gqln792gixqfh201xciaygmxbafa0wyv5gpbg9w5zkbbv44wrfk"; depends=[CompQuadForm]; };
-  MicSim = derive2 { name="MicSim"; version="1.0.12"; sha256="186m0p08h6x8zhk82sm1hsyrqdl3p872xn03ysv3g5bldglc9677"; depends=[chron rlecuyer snowfall]; };
+  MicSim = derive2 { name="MicSim"; version="1.0.13"; sha256="16j2ffl6379afhk9dx7z2lci79ywq1nhmjk070kfknlrabl8cs2n"; depends=[chron rlecuyer snowfall]; };
   MicroDatosEs = derive2 { name="MicroDatosEs"; version="0.8.2"; sha256="0k0hmi3ciipizmgjw1i5rrsg34yx21s1msn40vc4qc9s1n4wd8dl"; depends=[readr]; };
   MicroMacroMultilevel = derive2 { name="MicroMacroMultilevel"; version="0.4.0"; sha256="1q5cyqr4hdl1wp2isk6p4p084i83kg6hd406wdp1nj9lv5i0xvgw"; depends=[]; };
   MicroStrategyR = derive2 { name="MicroStrategyR"; version="1.0-1"; sha256="0a6bk0wnwx8zy9081n7wb12lidgckrhn350r0q5m6aa82l6l8ihi"; depends=[gWidgetsRGtk2]; };
   MigClim = derive2 { name="MigClim"; version="1.6"; sha256="171pnalidyw0v2fcjdc3kyrq5kg035kwj5xl8zwgn3hlanpaljvp"; depends=[raster SDMTools]; };
   MindOnStats = derive2 { name="MindOnStats"; version="0.11"; sha256="13995v4n0hfb53w02jk81pl7nazkvqwwv87y1sr99jr9ppzc08mz"; depends=[]; };
   Miney = derive2 { name="Miney"; version="0.1"; sha256="0sgln0653rgglinr8rns5s2az0lgyp9slmynyhhhs265grkhrfj0"; depends=[]; };
-  Miso = derive2 { name="Miso"; version="0.1.1"; sha256="151klf07k5f670ssclg6bba18vfamyclz1sq3x0l9bzdvkng0lak"; depends=[S4Vectors]; };
+  Minirand = derive2 { name="Minirand"; version="0.1.0"; sha256="0iahhshqxpkxhpchb4hiv7d9rir2d3zxazs2nz7ymzdlhnn41xi1"; depends=[]; };
+  Miso = derive2 { name="Miso"; version="0.1.5"; sha256="1d36rnacw3rrjbrk4h0jlg13qk5d9lw77axbypbk5ng4wk47bcdp"; depends=[dplyr plotly S4Vectors]; };
   MissMech = derive2 { name="MissMech"; version="1.0.2"; sha256="1b7i1balfl1cqr3l4l4wxlahk2gmawzv9rhyibwzf0yp60cb1sv9"; depends=[]; };
   MissingDataGUI = derive2 { name="MissingDataGUI"; version="0.2-5"; sha256="0drbm87ka17avg6fmswjilgnz9c3azwd0236s8yfms24k9k77vnd"; depends=[cairoDevice GGally ggplot2 gWidgetsRGtk2 reshape]; };
   MitISEM = derive2 { name="MitISEM"; version="1.2"; sha256="0dn398vrxh16gmy7ghh5000dgk7cbhb3gi3myrxp5dfri3ysjxcj"; depends=[mvtnorm]; };
@@ -2194,37 +2296,40 @@ in with self; {
   MixtureInf = derive2 { name="MixtureInf"; version="1.1"; sha256="12qcflmrpzh4w5b40xq5qicks6p0cwqpf5k84pwabkjb168afddv"; depends=[quadprog]; };
   MixtureRegLTIC = derive2 { name="MixtureRegLTIC"; version="1.0.0"; sha256="052gyk4gqv49fa2rxbxnib29f1vjxiw4q8llkfhsv8kw5pw38699"; depends=[]; };
   MlBayesOpt = derive2 { name="MlBayesOpt"; version="0.3.3"; sha256="0aazcf94gckgxd51r21hv3msa18br5xcq8xp03w448di546qzbnn"; depends=[data_table dplyr e1071 foreach Matrix ranger rBayesianOptimization rlang xgboost]; };
-  MmgraphR = derive2 { name="MmgraphR"; version="0.2"; sha256="0al65hsqpak44w5zvdzhyh6l1q981lzyvx37hbcy0z0qn3vz16kn"; depends=[colorspace march TraMineR]; };
-  MoEClust = derive2 { name="MoEClust"; version="1.1.0"; sha256="1442x2ajiib1fgj6bc3zlqy9q3bjnhnn29f7fjin99lq7c5r132p"; depends=[lattice matrixStats mclust mvnfast nnet vcd]; };
+  MmgraphR = derive2 { name="MmgraphR"; version="0.3-1"; sha256="0nfv2cax2v2zhsbprwykngq5n6i5qcf8189rci9d48d5k9qm4a5r"; depends=[colorspace march msm TraMineR]; };
+  MoEClust = derive2 { name="MoEClust"; version="1.2.0"; sha256="1is0k96czjqfr9z9kajz1qfqpa7b38pi1lyngzrj6y1hhgfrxywk"; depends=[lattice matrixStats mclust mvnfast nnet vcd]; };
   MoLE = derive2 { name="MoLE"; version="1.0.1"; sha256="0bq19vwqjn5hl4mw5imkydbp39gal992vnh2dwrq8bb8cmj3qh91"; depends=[]; };
   MoTBFs = derive2 { name="MoTBFs"; version="1.0"; sha256="09ymfgw6psc1y0dczvsrsw5cki58wn0d8vj56ydfylrxn24g3jfq"; depends=[bnlearn lpSolve quadprog]; };
   Mobilize = derive2 { name="Mobilize"; version="2.16-4"; sha256="16vdvpwspa0igb52zvzyk0if9l4wq1hm8y42572i8sh1m82wyyfs"; depends=[ggplot2 Ohmage reshape2 wordcloud]; };
   ModelGood = derive2 { name="ModelGood"; version="1.0.9"; sha256="1y99a7bgwx167pncxj00lbw3cdjj23fhhzl8r24hwnhxr984kvzl"; depends=[prodlim]; };
-  ModelMap = derive2 { name="ModelMap"; version="3.3.5"; sha256="1rmm1a2nw91kzvxpvq9qhlag0dhihis7mgscgslqia6z8fr86qvs"; depends=[corrplot fields HandTill2001 mgcv PresenceAbsence randomForest raster rgdal]; };
-  ModelMetrics = derive2 { name="ModelMetrics"; version="1.1.0"; sha256="119xxmzb5biq7k1yxqsf0jmmarmfn6lds9x9hfgv593xlpym6za8"; depends=[Rcpp]; };
+  ModelMap = derive2 { name="ModelMap"; version="3.4.0.1"; sha256="1279k5hznxrb6fq4zd1baw1pm5dj5437g5awkgb8kp7ll8raa2ql"; depends=[corrplot fields HandTill2001 mgcv PresenceAbsence randomForest raster rgdal]; };
+  ModelMetrics = derive2 { name="ModelMetrics"; version="1.2.0"; sha256="1sgdyrf6fbsn18gk8slir4a1yhv133kfhyg2crfs759nff4aw89h"; depends=[data_table Rcpp]; };
   Modelcharts = derive2 { name="Modelcharts"; version="0.1.0"; sha256="1jy78kyyh4r13px2d5bm7fra5bkcpimzfji0hmydspkfi3qla37x"; depends=[dplyr plotly]; };
   Modeler = derive2 { name="Modeler"; version="3.4.3"; sha256="1k2zwky0i15kypa9mdqc51qipah6pf1zgkrb6xc76xsavjyacfjm"; depends=[class ClassComparison ClassDiscovery e1071 neuralnet nnet oompaBase randomForest rpart TailRank]; };
   MomTrunc = derive2 { name="MomTrunc"; version="1.41"; sha256="0az499xzvnczqnbh4g3h5jyz8isq0zdw0x654haac6v6045f5xav"; depends=[matrixcalc mvtnorm]; };
   Momocs = derive2 { name="Momocs"; version="1.2.9"; sha256="13pgn31hv529z33mi020w8wm8ya7hyi5yfsp45a78wdhinqas9mm"; depends=[ape dplyr geometry geomorph ggplot2 jpeg magrittr MASS progress RColorBrewer rgeos sp]; };
   Mondrian = derive2 { name="Mondrian"; version="1.0-0"; sha256="07r64q518diphai951pw4vfaw4sd6bqwhi6q5cp4pcl3aqjynkmj"; depends=[RColorBrewer]; };
   MonetDB_R = derive2 { name="MonetDB.R"; version="1.0.1"; sha256="1r7vki0rrzwcrfg4f2lfx30g614vf2xi62qb1rs21a9j5741lxlx"; depends=[codetools DBI digest]; };
-  MonetDBLite = derive2 { name="MonetDBLite"; version="0.5.1"; sha256="01gcwr5r47dkmr1y2q387xv1qr2fryq9574aijx1a39ywhvcm8pq"; depends=[codetools DBI digest]; };
+  MonetDBLite = derive2 { name="MonetDBLite"; version="0.6.0"; sha256="1nwjnl40lmpykgjrhq39yldd7dn7xncg7gfcjczza680v47wxgj2"; depends=[codetools DBI digest]; };
   MonoInc = derive2 { name="MonoInc"; version="1.1"; sha256="14rykw3bfj0vznz0rw4vsg1k4vanfv9cy867vspw966ncl4bw70h"; depends=[compare doParallel foreach iterators sitar]; };
   MonoPhy = derive2 { name="MonoPhy"; version="1.2"; sha256="0997kg8hfwgsc9s155z0wrf7rrhn3vf6681j9psjl3hsspg08z2r"; depends=[ape phangorn phytools RColorBrewer taxize]; };
   MonoPoly = derive2 { name="MonoPoly"; version="0.3-9"; sha256="130hv05fwsskk1bvr7fk8bmafq26vimkfgssjdk3zaz0hm3pxrp4"; depends=[quadprog]; };
   MonteCarlo = derive2 { name="MonteCarlo"; version="1.0.5"; sha256="0a62wq448kq10mf1nhdr0nybzzz7d63nxakggpzmkzz4fz0l67bd"; depends=[abind codetools reshape rlecuyer snow snowfall]; };
   Morpho = derive2 { name="Morpho"; version="2.6"; sha256="11v0lv1mfyp252y20jxlr9bym3rh8mcr2v25qhvq1133jr420lyd"; depends=[colorRamps doParallel foreach MASS Matrix Rcpp RcppArmadillo rgl Rvcg]; };
   MorseGen = derive2 { name="MorseGen"; version="1.2"; sha256="1kq35n00ky70zmxb20g4mwx0hn8c5g1hw3csmd5n6892mbrri8s9"; depends=[]; };
-  MortCast = derive2 { name="MortCast"; version="1.2-0"; sha256="1lmkqywcb3acfmbknxpl62n87rv4qz7hq2kyl98x8l62w6swabr6"; depends=[wpp2017]; };
-  MortalityLaws = derive2 { name="MortalityLaws"; version="1.4.0"; sha256="1440fhwhmg72q7nv3cpnb658vhlkz586i17h82jjwr4v63almq8m"; depends=[minpack_lm pbapply RCurl]; };
+  MortCast = derive2 { name="MortCast"; version="1.2-1"; sha256="13g78q9165b6528pflrfrcay5fl151jy13497g9xcr7dxkjr8ms9"; depends=[wpp2017]; };
+  MortalityGaps = derive2 { name="MortalityGaps"; version="1.0.0"; sha256="0nfm8xa7gnshrl8hsvmvr3za8nbppp7f7i5h4ni204w7xwvh8jxc"; depends=[crch forecast MASS pbapply]; };
+  MortalityLaws = derive2 { name="MortalityLaws"; version="1.6.0"; sha256="0jn9gs17a5l83w5plwmiqssffjag470xx98ff1sq7ijn9ra513ih"; depends=[minpack_lm pbapply RCurl tidyr]; };
   MortalitySmooth = derive2 { name="MortalitySmooth"; version="2.3.4"; sha256="1clx8gb8jqvxcmfgv0b8jyvh39yrmcmwr472j9g3ymm95m4hr8fq"; depends=[lattice svcm]; };
   MortalityTables = derive2 { name="MortalityTables"; version="1.0"; sha256="07pbjgc4qvznw1rfvmz6ndg0gzj0k61iajwn51ijpb7hscwi8937"; depends=[ggplot2 scales]; };
   MotilityLab = derive2 { name="MotilityLab"; version="0.2-5"; sha256="080j548sp1c4yqqd7p7zgr70j1xyrw3fgjj1f521sgh84x5h2hbc"; depends=[ellipse]; };
   MplusAutomation = derive2 { name="MplusAutomation"; version="0.7-2"; sha256="0hy6g0fgidjpz7mn1qwwdnhyxjm0v2g9r3fl32zmkvix3852qx1r"; depends=[boot coda digest ggplot2 gsubfn lattice pander plyr texreg xtable]; };
+  Mqrcm = derive2 { name="Mqrcm"; version="1.0"; sha256="1z8zyjvjz1izaal5y6dnlm86pvydab45d9qnhcnibi2l9r1ladkc"; depends=[Hmisc pch]; };
   MsdeParEst = derive2 { name="MsdeParEst"; version="1.7"; sha256="1zhi1jr30sl7jpsw37lc3akfzixlhm9k2hjkha1pjy5fmd5lddlx"; depends=[MASS moments mvtnorm sde]; };
+  MtreeRing = derive2 { name="MtreeRing"; version="1.1"; sha256="1linz553ffmi1qhamxnj5znffpqxm8g0wgliwggjvkwrp3lqwgqx"; depends=[bmp dplR imager jpeg magick magrittr measuRing png shiny shinydashboard shinyWidgets spatstat tiff]; };
   MuChPoint = derive2 { name="MuChPoint"; version="0.6.1"; sha256="15bqsc7bsjg55qxjwxh58bxbwz61a6wv4xxph994g4020b98l01x"; depends=[capushe Matrix Rcpp shiny]; };
   MuFiCokriging = derive2 { name="MuFiCokriging"; version="1.2"; sha256="09p8wdmlsf21ibqyjigwdipcin3ij0naxcd035hqgfj76v20wiyv"; depends=[DiceKriging]; };
-  MuMIn = derive2 { name="MuMIn"; version="1.40.4"; sha256="1xw7b74qg0ivgk3l1krjn2wrl969c41hr0y2nk0z8fw94xcfggyr"; depends=[Matrix]; };
+  MuMIn = derive2 { name="MuMIn"; version="1.42.1"; sha256="1g0pp8g9d3cfk2n0g4rd3lvwg4gsqshdk1nzwb5m041iyl5j8zps"; depends=[Matrix nlme]; };
   MuViCP = derive2 { name="MuViCP"; version="1.3.2"; sha256="1wkiwdz4bblxf1zr57khljqkga9ks9aj1lnidvmhib94q6b8fnf4"; depends=[gtools MASS sm]; };
   MullerPlot = derive2 { name="MullerPlot"; version="0.1.2"; sha256="0am5brdmbh2mw74fbw9nha6h4qlhj8psg3142mql1ad99bd0zg4w"; depends=[RColorBrewer]; };
   MultAlloc = derive2 { name="MultAlloc"; version="1.2"; sha256="0c3sqfaa08s8mk4yz77kh6q6v9ic5xp52g9prfw1k2kv4nw1k2qd"; depends=[Rglpk]; };
@@ -2232,6 +2337,7 @@ in with self; {
   MultNonParam = derive2 { name="MultNonParam"; version="1.2.6"; sha256="1w9kp7qswz38r2xfi8sc52kc52c8hi2jzjsh8gj4491ds1lilv0r"; depends=[]; };
   MultiBD = derive2 { name="MultiBD"; version="0.2.0"; sha256="1qjfr8hx8sr5m8370yzi09r8jnh3i6907wzj3v4h83vmjh81db71"; depends=[BH Rcpp RcppParallel]; };
   MultiCNVDetect = derive2 { name="MultiCNVDetect"; version="0.1-1"; sha256="0mfisblw3skm4y8phfg4wa0rdchl01wccarsq79hv63y78pfhh13"; depends=[]; };
+  MultiFit = derive2 { name="MultiFit"; version="0.1.2"; sha256="0nyjyjznpl902mv9f05xzgh2y3ckv28zlp1wf87hpigly7491nyz"; depends=[data_table Rcpp RcppArmadillo]; };
   MultiGHQuad = derive2 { name="MultiGHQuad"; version="1.2.0"; sha256="00prkn5awxrh365j1jz312har1x4p8v52a0sqfy00pqr44ncmqqq"; depends=[fastGHQuad Matrix mvtnorm]; };
   MultiLCIRT = derive2 { name="MultiLCIRT"; version="2.11"; sha256="1qls0qp5fz377h50lvpzq3vkw49i3nvizli98gss50nqci8ssqm4"; depends=[limSolve MASS]; };
   MultiMeta = derive2 { name="MultiMeta"; version="0.1"; sha256="0gj0wk39fqd21xjcah20jk16jlfrcjarspbjk5xv74c9k4p5gmak"; depends=[expm ggplot2 gtable mvtnorm reshape2]; };
@@ -2243,7 +2349,7 @@ in with self; {
   MultiVarMI = derive2 { name="MultiVarMI"; version="1.0"; sha256="1mlaprg3cfmfwrq7wh64fmyv1wpdnil7wpcrcg3921qydk65py6z"; depends=[BinOrdNonNor corpcor CorrToolBox Matrix moments norm PoisNonNor]; };
   MultiVarSel = derive2 { name="MultiVarSel"; version="1.1.2"; sha256="07qdi43bg03xyr99361c0565m1i5kzqjbvlc2npnyjyc2ygr386d"; depends=[glmnet Matrix tidyverse]; };
   MultinomialCI = derive2 { name="MultinomialCI"; version="1.0"; sha256="0ryi14d102kvxawls04hcw50n79jkcn29ill77lkfvj6nlzj8i5q"; depends=[]; };
-  MultipleBubbles = derive2 { name="MultipleBubbles"; version="0.1.0"; sha256="1g6yqp53dbd96jcjgmif39zb3a7f9zil10dhqi3vz3qv6r2vsnkj"; depends=[foreach MASS]; };
+  MultipleBubbles = derive2 { name="MultipleBubbles"; version="0.2.0"; sha256="047a1pql3jf500gwlap6ws5z7mx0sqmdq6jbql24nl5iypi9jqpf"; depends=[foreach MASS]; };
   MultiplierDEA = derive2 { name="MultiplierDEA"; version="0.1.18"; sha256="1d7cqa44yayyhwkl5wkp68b7vxakfnlwkprs811z8c2fmfm8vk5r"; depends=[lpSolveAPI]; };
   MultisiteMediation = derive2 { name="MultisiteMediation"; version="0.0.2"; sha256="1z9nh8iywlsjsrrmpm6h8hcnaqvh93dldn5rhp4wnj3c7db8qscy"; depends=[ggplot2 lme4 MASS psych statmod]; };
   MultivariateRandomForest = derive2 { name="MultivariateRandomForest"; version="1.1.5"; sha256="0mww4x1hqraiyvmw2f9s6h180kplmj36hb7zfg7xlkmgdf4apk8d"; depends=[bootstrap Rcpp]; };
@@ -2253,14 +2359,14 @@ in with self; {
   Myrrixjars = derive2 { name="Myrrixjars"; version="1.0-2"; sha256="1hhfg83z5kl6l250z3lippx3qc68k1wj1qlfzd6m66rgmk699gyl"; depends=[rJava]; };
   NADA = derive2 { name="NADA"; version="1.6-1"; sha256="1jjlm6rljk4nv6b7l2w3xnj31j61wq30sp5pnna8wav6gyjqjfmb"; depends=[survival]; };
   NAEPprimer = derive2 { name="NAEPprimer"; version="1.0.1"; sha256="19p1livdnayfcl88f8r9x1vg30x522q8lgx66pfgwpkxjzvrqa2l"; depends=[]; };
-  NAM = derive2 { name="NAM"; version="1.6.1"; sha256="1cyi5vc2ppwfd7bixm21cyy4z9alcx2dz316zgwnc5n3jy0wdb81"; depends=[randomForest Rcpp]; };
+  NAM = derive2 { name="NAM"; version="1.6.4"; sha256="0b5dcjcn8qg9lmjfr33n8y0c67iv2yvqk0wascl71hgphqrcypm4"; depends=[randomForest Rcpp]; };
   NAPPA = derive2 { name="NAPPA"; version="2.0.1"; sha256="0nn4wgl8bs7sy7v56xfif7i9az6kdz9xw7m98z1gnvl2g7damvn3"; depends=[NanoStringNorm plyr]; };
   NB = derive2 { name="NB"; version="0.9"; sha256="1gh42z7lp6g09fsfmikxqzyvqp2874cx3a6vr96w43jfwmgi2diq"; depends=[]; };
   NB_MClust = derive2 { name="NB.MClust"; version="1.1.1"; sha256="0hzmrszxgx3pylf9pjjwk2ryjhwz7naxxkhcqpnfjv337vv5dg0i"; depends=[MASS]; };
   NBDdirichlet = derive2 { name="NBDdirichlet"; version="1.3"; sha256="1657mqwn5i1b0g0gva387zl02vpymn98f71b0p7i7xv033mqnpqw"; depends=[]; };
   NBLDA = derive2 { name="NBLDA"; version="0.99.0"; sha256="1fd6f43yhwvdb81r0b9hpmna5bphhqcgwiwjkpdyqz4h9cdmsj21"; depends=[ggplot2 sSeq]; };
   NBPSeq = derive2 { name="NBPSeq"; version="0.3.0"; sha256="0l4ylxhs2k9ww21jjqs67fygk92avdchhx2y1ixzl7yr2yh1y9by"; depends=[qvalue]; };
-  NCA = derive2 { name="NCA"; version="2.0"; sha256="08951mmmpziljclwzmbni1s5a62wr9s80iyfsr07gkdz4sx3cvqf"; depends=[gplots KernSmooth quantreg sfa]; };
+  NCA = derive2 { name="NCA"; version="3.0.1"; sha256="11ajnhx840z5122ir2ijxcwqyr535acq4dnp7mah4h1y45krfdms"; depends=[ggplot2 gplots KernSmooth lpSolve progress quantreg sfa]; };
   NCSampling = derive2 { name="NCSampling"; version="1.0"; sha256="0bv93xffnzvbip86b3pg7apxzh3410mxff77q119m0z7f6vm3fam"; depends=[lattice randomForest yaImpute]; };
   NCmisc = derive2 { name="NCmisc"; version="1.1.5"; sha256="1dq38ac97l8b6ys3yxqnndbrp8fa8zfw0lr4nq2421sn91769w22"; depends=[proftools]; };
   NCutYX = derive2 { name="NCutYX"; version="0.1.0"; sha256="0r2ghnvrbya3p1d8rb5bsnz5v852vvc6rq65yafn2xzr7886wrg2"; depends=[fields glmnet MASS mvtnorm Rcpp RcppEigen]; };
@@ -2272,16 +2378,16 @@ in with self; {
   NHANES = derive2 { name="NHANES"; version="2.1.0"; sha256="0aphv3rakfcfrv2km1xyxpj1bxiazy6gwrvs7lyhxmq468fk4c9a"; depends=[]; };
   NHEMOtree = derive2 { name="NHEMOtree"; version="1.0"; sha256="0ycprj2rz2fy6a7ps0bsr27iphmbfxi9pbvl8rcr6p8yagfb84mb"; depends=[emoa partykit rpart sets]; };
   NHLData = derive2 { name="NHLData"; version="1.0.0"; sha256="0dfqalccbkmqrn3h1z6s78l818c8sqn7d6yc8mg872ygmszryci7"; depends=[]; };
-  NHMSAR = derive2 { name="NHMSAR"; version="1.7"; sha256="14jc0zfl39yn7vkprcnv80mk1i4vp8w4wk7nz6f34cf473xbf49d"; depends=[caTools glasso lars ncvreg ucminf]; };
-  NHPoisson = derive2 { name="NHPoisson"; version="3.1"; sha256="1gr682kxgw227yqw9w0iw9lrijsz5iszhnfk0mdhi6m1w9s28kcn"; depends=[car]; };
+  NHMSAR = derive2 { name="NHMSAR"; version="1.12"; sha256="034cjzbwyf5jkj24wf9s6dij7g416psd2iz7fjrg34q9ax2kzyyl"; depends=[glasso lars ncvreg ucminf]; };
+  NHPoisson = derive2 { name="NHPoisson"; version="3.2"; sha256="0k6m6ampp7g95d0jm5msvrgc12rqirpanb1ykbdf1ii027pqpwsn"; depends=[car]; };
   NIPTeR = derive2 { name="NIPTeR"; version="1.0.2"; sha256="0ll6amqyw33a93xiccihidrnbaqlx1q7kqcd4wks7cvqawd8pgv1"; depends=[Rsamtools S4Vectors sets]; };
   NIRStat = derive2 { name="NIRStat"; version="1.0"; sha256="1hi8201zslp1f7m3jci8q03y3f1zlcck2x3i793l7lsyl7qbzd1z"; depends=[ggplot2 gridExtra mgcv]; };
   NISTnls = derive2 { name="NISTnls"; version="0.9-13"; sha256="03a1c8a5dr5l5x4wbclnsh3vmx3dy7migfdzdx7d7p3s7hj3ibif"; depends=[]; };
   NISTunits = derive2 { name="NISTunits"; version="1.0.1"; sha256="0km9l3k9p35sb1qrhrz4ijjsdihvsp6j7cz5kh46lgf7nn6xdk7a"; depends=[]; };
   NITPicker = derive2 { name="NITPicker"; version="1.0.0"; sha256="0dls638mjkl8qnfx6gnzfa2ba8w6wcnq7np8lmvp9kw7fkqxnslb"; depends=[fda fda_usc fdasrvf]; };
-  NLMR = derive2 { name="NLMR"; version="0.3.0"; sha256="0cqs48jy9ydivjpmx76dyxxdhh3lww7qrmx5s8jcsxxxnn93lq8m"; depends=[checkmate dplyr fasterize purrr RandomFields raster sf spatstat tibble]; };
-  NLP = derive2 { name="NLP"; version="0.1-11"; sha256="15v50gxzmpqx49wzkwxfpb5xjpg9y829a0ifys372kf1cfj521aq"; depends=[]; };
-  NLPutils = derive2 { name="NLPutils"; version="0.0-4"; sha256="1dqbf8xmrzx81ybmp5qkd5a5rw3c19l2wxfnpddij4a1n074bwym"; depends=[NLP qdap SnowballC]; };
+  NLMR = derive2 { name="NLMR"; version="0.3.2"; sha256="09z0spxr8wh06qmbnypqll87fhv9i0vyamqv26dcdhhrhgmidg56"; depends=[checkmate dplyr fasterize RandomFields raster sf spatstat tibble]; };
+  NLP = derive2 { name="NLP"; version="0.2-0"; sha256="0xbhkrnxcbf322jfw31xcn4y2gnk5y7ccq1bz4h3prf44h0whr7w"; depends=[]; };
+  NLPutils = derive2 { name="NLPutils"; version="0.0-5"; sha256="1jxxly85iajzb9qckkkar0przyxv005cyvry0qi5dkzhbyl5k490"; depends=[NLP qdap SnowballC]; };
   NLRoot = derive2 { name="NLRoot"; version="1.0"; sha256="1x8mcdgqqrhyykr12bv4hl4wbh1zw2qgpnd2yrm68kb92iy95rh4"; depends=[]; };
   NMF = derive2 { name="NMF"; version="0.21.0"; sha256="1qq25n3k5sgh3srlshb3ic6q92s12c1ilqf5cd5anvq6cqfchc1v"; depends=[cluster colorspace digest doParallel foreach ggplot2 gridBase pkgmaker RColorBrewer registry reshape2 rngtools stringr]; };
   NMFN = derive2 { name="NMFN"; version="2.0"; sha256="0n5fxqwyvy4c1lr0glilcz1nmwqdc9krkqgqh3nlyv23djby9np5"; depends=[]; };
@@ -2296,21 +2402,22 @@ in with self; {
   NORMT3 = derive2 { name="NORMT3"; version="1.0-3"; sha256="041s0qwmksy3c7j45n4hhqhq3rv2hncm2fi5srjpwf9fcj5wxypg"; depends=[]; };
   NORRRM = derive2 { name="NORRRM"; version="1.0.0"; sha256="06bdd5m46c8bbgmr1xkqfw72mm38pafxsvwi9p8y7znzyd0i6ag3"; depends=[ggplot2 SDMTools]; };
   NORTARA = derive2 { name="NORTARA"; version="1.0.0"; sha256="1q4dmn5q939d920spmxxw08afacs3pzhr2gzwyqa5kn8xiz4ffg8"; depends=[corpcor Matrix]; };
-  NPBayesImpute = derive2 { name="NPBayesImpute"; version="0.6"; sha256="09cs6nj1pw4wv4w8bd1c4rilidzx12ymjzah9d0c412bwv0gmdyl"; depends=[Rcpp]; };
   NPC = derive2 { name="NPC"; version="1.1.0"; sha256="06y6vdln5zyinq9bsp66yz6i1v5bkw9pa2hknl9brwc75z359apn"; depends=[coin dplyr matlab permute]; };
   NPCD = derive2 { name="NPCD"; version="1.0-10"; sha256="1ag7j1r9j3piisg706hyhq8vaqfqvm1blxpkfxx7r1impjyqzyai"; depends=[BB R_methodsS3 R_oo]; };
   NPCirc = derive2 { name="NPCirc"; version="2.0.1"; sha256="1pyckjvf4vzns9hxnhnk7cm4abllmdj3f142pvjhnilyqwndqgyc"; depends=[circular misc3d movMF plotrix rgl shape]; };
   NPHMC = derive2 { name="NPHMC"; version="2.2"; sha256="000x9y00gfkaj5lf00a55b9qx15x05yp3g3nmp8slyzsnfv66p5d"; depends=[smcure survival]; };
-  NPMLEcmprsk = derive2 { name="NPMLEcmprsk"; version="2.1"; sha256="1v15ylgflbdr03pgh55fan1l6mymd1d5n6h9jhbcqahjlcsxkwq3"; depends=[]; };
+  NPMLEcmprsk = derive2 { name="NPMLEcmprsk"; version="3.0"; sha256="0nm88fsxgrfk0j0lmir57bhxy4p8ah503gpj6jdlvjqw862jigiq"; depends=[]; };
   NPMOD = derive2 { name="NPMOD"; version="0.1.0"; sha256="1m3rfgyxdbyr0m5vznav5qk70ch45wz3dc8wccxjcxrcfkn8i18k"; depends=[BSDA clinfun gWidgets nortest pspearman readxl rlang RVAideMemoire]; };
   NPMVCP = derive2 { name="NPMVCP"; version="1.1"; sha256="13jpm46abwziq8859jhl6hg1znk3ws1q7g4vlr2jyri3qa6h22dd"; depends=[]; };
   NPS = derive2 { name="NPS"; version="1.1"; sha256="02idja149a2sj97sks4lhsaflpifyxi6n0rjlcq9993f84szfgsi"; depends=[]; };
   NPflow = derive2 { name="NPflow"; version="0.13.1"; sha256="0sq47frh665m8mibif1w3i2z5pb577v1ngdjirbya0a9chpmwc3s"; depends=[ellipse fastcluster ggplot2 gplots pheatmap Rcpp RcppArmadillo reshape2 truncnorm]; };
   NPsimex = derive2 { name="NPsimex"; version="0.2-1"; sha256="1k9i1f5ckvzdns8f5qnm2zq7qs3wsgzsnfwdz21zmhmi6d0pwchm"; depends=[]; };
+  NRejections = derive2 { name="NRejections"; version="1.0.0"; sha256="103cs5hlqqk4s5h63lmrqdvajgxwy6ffn3mvy0ayd0n0arppr9ry"; depends=[doParallel foreach matrixcalc mvtnorm StepwiseTest]; };
   NSA = derive2 { name="NSA"; version="0.0.32"; sha256="0lnimyx3fpnw9zfhqm7y3ssvbpmvbmhcqy6fp83862imiwpl8i5r"; depends=[aroma_affymetrix aroma_core DNAcopy MASS matrixStats R_methodsS3 R_oo R_utils]; };
   NSM3 = derive2 { name="NSM3"; version="1.12"; sha256="0spkzx2zm8q85h7ij9r52bsqlwgw2fsc7zw3aaz8644q0xlnjnvj"; depends=[agricolae ash binom BSDA coin combinat epitools fANCOVA gtools Hmisc km_ci MASS metafor nortest np partitions quantreg Rfit SemiPar SuppDists survival waveslim]; };
   NSUM = derive2 { name="NSUM"; version="1.0"; sha256="1as4g3v7qlk9wxlpwhg293980jq9gy6qay77bbcrjf481gvkkbp6"; depends=[MASS MCMCpack]; };
   NScluster = derive2 { name="NScluster"; version="1.2.0"; sha256="04mn9lh4cl1hkz27z7ldqnfwmrvqi7m1zrvscpywdcilpjmcryv0"; depends=[]; };
+  NTsets = derive2 { name="NTsets"; version="1.0"; sha256="08qzrfd8yp6w8ysp2nvqpnc9y7zxws90gplm2y5ajpv0vjjg66gm"; depends=[fBasics gWidgets gWidgetsRGtk2 nortest RGtk2 RGtk2Extras tseries]; };
   NUCOMBog = derive2 { name="NUCOMBog"; version="1.0.4.2"; sha256="0s6gm3adc9qdh94pxzgccbxx1f1lbgqyvd4xk37xp6f3b5hwljdz"; depends=[snowfall]; };
   NameNeedle = derive2 { name="NameNeedle"; version="1.2.4"; sha256="1f8hmabwafjmgx2z381a3m84zfrd0s9x51haa4c1phq41yfq2lm5"; depends=[]; };
   NanoStringNorm = derive2 { name="NanoStringNorm"; version="1.2.1"; sha256="05r1hvrxwi2mcq3pv6b699291qg120ijad96s5dah2f6cwx7gm7j"; depends=[gdata vsn XML]; };
@@ -2324,33 +2431,37 @@ in with self; {
   NetComp = derive2 { name="NetComp"; version="1.6"; sha256="11rxpdihn575diqfvc7yvxhlr2c19fig4v4a5c6jhqyfdsd60fsv"; depends=[gdata]; };
   NetData = derive2 { name="NetData"; version="0.3"; sha256="1jf05zwy0c6gmm7kvxlwvai61bz4wpsw7cl0h4i21ipzn1rqxmqj"; depends=[]; };
   NetIndices = derive2 { name="NetIndices"; version="1.4.4"; sha256="0ydivbri8l8zkxi18ghj9h66915scyhca8i9mcyq4b06mjfigss8"; depends=[MASS]; };
-  NetLogoR = derive2 { name="NetLogoR"; version="0.3.3"; sha256="1msln8k3rllsb414c35pw90bral039vijjrfhd7xzk9267jcv7vk"; depends=[abind car CircStats data_table Hmisc matrixStats plyr quickPlot raster rgeos sp SpaDES_tools]; };
+  NetLogoR = derive2 { name="NetLogoR"; version="0.3.4"; sha256="0vsbd650mfqwqqhsd1h92yfwc3rrirr2m29ffv8a9cwppmhkmfqp"; depends=[abind car CircStats data_table Hmisc matrixStats plyr quickPlot raster rgeos sp SpaDES_tools]; };
   NetOrigin = derive2 { name="NetOrigin"; version="1.0-3"; sha256="162dhyx7z1nd3z14lfvm3dz0qwwvrc3n17zswbnwcfj6g1b1p2f1"; depends=[colorspace Hmisc igraph]; };
   NetPreProc = derive2 { name="NetPreProc"; version="1.1"; sha256="0r51dqymf2nqm86py4zwdlf7qf120j0bg9r6a9c0gsyyijh4z40p"; depends=[graph]; };
   NetRep = derive2 { name="NetRep"; version="1.2.1"; sha256="0adlnq22nslp8ildbrf0z26783kzgz4cyn45a981qyjbw4c42hin"; depends=[abind BH foreach RColorBrewer Rcpp RcppArmadillo RhpcBLASctl statmod]; };
   NetSwan = derive2 { name="NetSwan"; version="0.1"; sha256="1mwdy3ahagiifj2bd1ajrafvnxzi74a1x1d3i2laf1hqpz3fbgld"; depends=[igraph]; };
   NetWeaver = derive2 { name="NetWeaver"; version="0.0.2"; sha256="0wsmz7db8q2fycz6rfbbfs67ccj857y9zs4d80k1gnqazgj5whkn"; depends=[]; };
-  NetworkChange = derive2 { name="NetworkChange"; version="0.3"; sha256="1brpa6fhmrgafmk1iw19g0pppwxi0ld0nyhx9c0fgnkn9m82isjk"; depends=[abind ggplot2 ggvis LaplacesDemon MASS MCMCpack mvtnorm RColorBrewer Rmpfr]; };
+  NetworkChange = derive2 { name="NetworkChange"; version="0.4"; sha256="0vl0w7f34fxh32gi521hzyd0a47q7l9fyn53d1g5bsl5w5l9bym1"; depends=[abind ggplot2 ggvis LaplacesDemon MASS MCMCpack mvtnorm plyr RColorBrewer Rmpfr tidyr]; };
   NetworkComparisonTest = derive2 { name="NetworkComparisonTest"; version="2.0.1"; sha256="09fqlnpdibf9jr5mw2pzmwi66f6cjz8rmm8jay0cv2bami7jhy2a"; depends=[IsingFit IsingSampler qgraph reshape2]; };
-  NetworkDistance = derive2 { name="NetworkDistance"; version="0.1.0"; sha256="0k11crn1wiisw4qrc2yidrhdvscx59skqy4ckxdiykpb1jh5a7s4"; depends=[doParallel foreach igraph Matrix network Rcpp RcppArmadillo Rdpack RSpectra]; };
+  NetworkDistance = derive2 { name="NetworkDistance"; version="0.3.0"; sha256="1s406jj0hg7aijacwcvp5li5lvdsiiba2vg5qmkdlgmvxw8zb3q8"; depends=[doParallel foreach igraph Matrix network pracma Rcpp RcppArmadillo Rdpack RSpectra]; };
   NetworkExtinction = derive2 { name="NetworkExtinction"; version="0.1.0"; sha256="1scza639kf3zzz2yd9q31wsvxpvpq8hbx82a206jkxlxb4dq6vxr"; depends=[broom dplyr ggplot2 magrittr network scales sna tidyr]; };
+  NetworkInference = derive2 { name="NetworkInference"; version="1.2.3"; sha256="1l30xs7342cyczk7vnnhrz8ngbl1j7y9icvyfabvi9zj87rw788q"; depends=[assertthat checkmate ggplot2 ggrepel Rcpp RcppProgress]; };
   NetworkRiskMeasures = derive2 { name="NetworkRiskMeasures"; version="0.1.2"; sha256="0c10nahybjd1n0yr78ynbsdnkfa0p7kz6dx3rbwxwsp3x4mrcd6y"; depends=[dplyr expm ggplot2 Matrix]; };
-  NetworkToolbox = derive2 { name="NetworkToolbox"; version="1.1.2"; sha256="1wgiwbackqwdis1mw3nyrv3wgi8c8s49cl16f8l46yn7763nkskf"; depends=[corrplot doSNOW fdrtool foreach igraph IsingFit MASS Matrix ppcor psych pwr qgraph R_matlab]; };
-  NeuralNetTools = derive2 { name="NeuralNetTools"; version="1.5.1"; sha256="1dsjv0vm45skw74x1fz3gd7g6p52ayfwz85bh92j29mfxbnacbnn"; depends=[ggplot2 nnet reshape2 scales tidyr]; };
+  NetworkToolbox = derive2 { name="NetworkToolbox"; version="1.2.1"; sha256="08a2kk8gmgawr18n38z95imaf82lp453b8dam3nn1hsa3abl5c95"; depends=[corrplot doParallel fdrtool foreach igraph MASS Matrix ppcor psych pwr qgraph R_matlab]; };
+  NeuralNetTools = derive2 { name="NeuralNetTools"; version="1.5.2"; sha256="0d73rbp8v0k0j8dp4yigan7krhglx6qfbadvyg7nsj67xc00vbfd"; depends=[ggplot2 nnet reshape2 scales tidyr]; };
   Newdistns = derive2 { name="Newdistns"; version="2.1"; sha256="1b5njkzj8b0wrvvfv904di0933k9d320gadmfm5zl6pzdp34bh1i"; depends=[AdequacyModel]; };
   NightDay = derive2 { name="NightDay"; version="1.0.1.1"; sha256="1gwwxk428gkvci4dhfb3zikvidalpqkl0q2r6qpm58c12j14jk1h"; depends=[maps]; };
   Nippon = derive2 { name="Nippon"; version="0.7.1"; sha256="1nw0kaqw5my2bx7i82q4j2qlsmc95kgjnbm9r9np3swhq6wizrmq"; depends=[stringr]; };
   NipponMap = derive2 { name="NipponMap"; version="0.2"; sha256="0jk3zz05vhximbbm15h7ngb0ffxp5w8zhisifipkdgvg1hpi7pb7"; depends=[sf tibble]; };
+  NitrogenUptake2016 = derive2 { name="NitrogenUptake2016"; version="0.2.3"; sha256="13mh63z3x8yqd31v5a4d10bhzk4y67ac38flwk2msv7qcx37sny6"; depends=[car MASS zoo]; };
   NlcOptim = derive2 { name="NlcOptim"; version="0.5"; sha256="0chrf9ac3x1a0b86lf6wjzdsjcv5n08rav88b7xf4c31lflf1rd1"; depends=[MASS quadprog]; };
-  NlinTS = derive2 { name="NlinTS"; version="1.3.2"; sha256="1isr6ci6dsbbx804y3hc8aqvhggfs7ix5yiz32dby69i85b6lj5a"; depends=[Rcpp Rdpack timeSeries]; };
+  NlinTS = derive2 { name="NlinTS"; version="1.3.5"; sha256="0ihpkyzzd2k5izm84kynj211n8p3qym9hka86bzs3gm256j54q01"; depends=[Rcpp Rdpack timeSeries]; };
   NlsyLinks = derive2 { name="NlsyLinks"; version="2.0.6"; sha256="1kdqifwjkkk4x1ixg3ca6lbqx79ab907nnzwxca5iw721mbk5njg"; depends=[lavaan]; };
+  Nmisc = derive2 { name="Nmisc"; version="0.3.3"; sha256="1dy9m8sfrns6mnk8j79ma71dmgvanl6jsj7sykyn7pijjfazw1zq"; depends=[dplyr magrittr purrr rappdirs rlang stringr tibble]; };
   NoiseFiltersR = derive2 { name="NoiseFiltersR"; version="0.1.0"; sha256="0y90si8f5hsi273g10hw700r72la30hwqlwg59gaq76wqlkm8j0p"; depends=[caret e1071 kknn MASS nnet randomForest rJava rpart RWeka]; };
   NominalLogisticBiplot = derive2 { name="NominalLogisticBiplot"; version="0.2"; sha256="0m9442d9i78x57gdwyl3ckwp1m6j27cam774zkb358dw5nmwxbmz"; depends=[gmodels MASS mirt]; };
-  NonCompart = derive2 { name="NonCompart"; version="0.4.3"; sha256="14wvr17p0dza11p97vmjcn27l73vmw5ms3gbrgxcxm33ybwya63n"; depends=[]; };
+  NonCompart = derive2 { name="NonCompart"; version="0.4.4"; sha256="0m62jwp572z7gn4rykyr47b6cfi4sy9hxxghhlkjdclkxw7bjxx9"; depends=[]; };
   NonpModelCheck = derive2 { name="NonpModelCheck"; version="3.0"; sha256="13qk2wbgpdf763q5xg29p2hxwqpml23pcgxrzmx12vnapnqfh71k"; depends=[dr]; };
-  Nonpareil = derive2 { name="Nonpareil"; version="3.3.1"; sha256="0ldl90h499wwm992cj71phf3ryqvjnq0ygarcxf7h85krr4j3sx2"; depends=[]; };
+  Nonpareil = derive2 { name="Nonpareil"; version="3.3.3"; sha256="02w4qxgg3snl32p41c4vg5ip7pmqcn0k3c753k5mvz41ln821sj5"; depends=[]; };
   NormExpression = derive2 { name="NormExpression"; version="0.1.0"; sha256="1j4q8mb70ig40acfd9kfy12vxdvq3qpf53rxh47kkw8mywnd0449"; depends=[]; };
   NormPsy = derive2 { name="NormPsy"; version="1.0.8"; sha256="13w4xjdjjg9mzmfaflc0gp306kazyvxshpj4vnl6gym3vpi9qax8"; depends=[lcmm]; };
+  NormalBetaPrime = derive2 { name="NormalBetaPrime"; version="1.1"; sha256="1sik3iqwqy3wgvxip6nz4gsxh27zpmgfzvpd2251bvc870j09a9w"; depends=[GIGrvg glmnet MASS Matrix pracma pscl]; };
   NormalGamma = derive2 { name="NormalGamma"; version="1.1"; sha256="0r3hhfscif0sx9v8f450yf119gpvf3ilpb8n3ziy4v4qf2jlcfnk"; depends=[histogram optimx]; };
   NormalLaplace = derive2 { name="NormalLaplace"; version="0.2-0"; sha256="11z568zhb7jw9ghp6wlyf26ijm25crc5pqhzw71qgvva42nsmmwn"; depends=[DistributionUtils GeneralizedHyperbolic]; };
   NormalizeMets = derive2 { name="NormalizeMets"; version="0.25"; sha256="0hnyr2aklibbvs6b6q4l0zbb9g8qmp2ds4lqic8a9alqn66sfnf2"; depends=[AUC crmn e1071 GGally ggplot2 htmlwidgets impute knitr limma plotly rmarkdown]; };
@@ -2371,10 +2482,9 @@ in with self; {
   OGI = derive2 { name="OGI"; version="1.0.0"; sha256="0qw55jamkvdf3vfa5c0ygbymbs4d9q15dihiqz691hdfnyjvc2mk"; depends=[lpSolve]; };
   OHPL = derive2 { name="OHPL"; version="1.3"; sha256="0hm229nyv96s3sjljn5rwh89g1n6wsf24qm3ll5ccb0q2pcwnd7r"; depends=[glmnet mvtnorm pls]; };
   OIdata = derive2 { name="OIdata"; version="1.0"; sha256="078khxrszwnrww2h0ag153bf59fnyhirxy4m56ssgr2gmfahaymf"; depends=[maps RCurl]; };
-  OIsurv = derive2 { name="OIsurv"; version="0.2"; sha256="148mpjj5navc1vrl72y87krn4lf3awnd32z3g4qqaia404w5w7p7"; depends=[KMsurv survival]; };
   OLScurve = derive2 { name="OLScurve"; version="0.2.0"; sha256="1zqapfwgwy9rxnbhmlgplkphw1bdia4cyi9q6iwcppw3rjw75f1n"; depends=[lattice]; };
   ONETr = derive2 { name="ONETr"; version="1.0.3"; sha256="14l56qcmyyk2ivcfkfv7j2k4i1mfrngpi9zcc88w6xfhz5qlb548"; depends=[plyr RCurl XML]; };
-  OOBCurve = derive2 { name="OOBCurve"; version="0.2"; sha256="1dr2mp2wi2dir1h5w3rw17154byfy3gx02x2kz1r67l9dfgrr505"; depends=[mlr randomForest ranger]; };
+  OOBCurve = derive2 { name="OOBCurve"; version="0.3"; sha256="1i7prybs3b60ipl34zrq6mcr6w9kc1d44b14mxcd752k42k6xs2r"; depends=[mlr randomForest ranger]; };
   OOR = derive2 { name="OOR"; version="0.1.2"; sha256="1zw7g0365znyn828qqsn83l2a837wwj9cx7dzcbns28vhqmsn6hm"; depends=[]; };
   OOmisc = derive2 { name="OOmisc"; version="1.2"; sha256="09vaxn5czsgn6wpr27lka40kzd76jzqgqxavf26ms3m9kkdf83g4"; depends=[]; };
   OPDOE = derive2 { name="OPDOE"; version="1.0-10"; sha256="04z944i4f3i0cjnxh32wf7n2dfyynnvkz4lxdkn90flam2np58yv"; depends=[crossdes gmp mvtnorm nlme orthopolynom polynom]; };
@@ -2385,6 +2495,7 @@ in with self; {
   ORIClust = derive2 { name="ORIClust"; version="1.0-1"; sha256="1biddddyls2zsg71w4innxl0ckfb80q2j9pmd56wvbc0qnbm0w3q"; depends=[]; };
   ORMDR = derive2 { name="ORMDR"; version="1.3-2"; sha256="0y7b2aja3zvsd6lm7jal9pabcfxv16r2wh0kyzjkdfanvvgk3wmm"; depends=[]; };
   OSCV = derive2 { name="OSCV"; version="1.0"; sha256="17wrfak6b6m2l3iqbhdwcfh0rlqb14rkvrbari7v46gya9v7hq20"; depends=[mc2d]; };
+  OSDR = derive2 { name="OSDR"; version="1.1"; sha256="0wwyqsvni3szbmq953bhxld4172jp1knr2farw06b0bbdglx3q7w"; depends=[]; };
   OSMscale = derive2 { name="OSMscale"; version="0.5.1"; sha256="0rjhyhh1iafgd9h1pbd2clyg2sh0gg7y1aqmiislqyn6h6jrvgqn"; depends=[berryFunctions OpenStreetMap sp]; };
   OSTSC = derive2 { name="OSTSC"; version="0.0.1"; sha256="0p92w25xvajsn44rd5hg1m7l9l4m0rpmw175nnqr438432hqh7cc"; depends=[doParallel doSNOW fields foreach MASS]; };
   OTE = derive2 { name="OTE"; version="1.0"; sha256="18w483syhs523yfib9sibzmj16bypqxk4sc4771kfr1958h3igai"; depends=[randomForest]; };
@@ -2397,10 +2508,11 @@ in with self; {
   OceanView = derive2 { name="OceanView"; version="1.0.4"; sha256="072gjbka7ncp5sa463kbi06fjx7nm1ljgzpx4b7ybq9pcwvnyzz6"; depends=[plot3D plot3Drgl rgl shape]; };
   Ohit = derive2 { name="Ohit"; version="1.0.0"; sha256="132d4drc2phw9ppxnczb1ycdg3dv085k8p6bcaj3v866j0hfxjgb"; depends=[]; };
   Ohmage = derive2 { name="Ohmage"; version="2.11-4"; sha256="14pga59ikiywyl6xnfd2d8sy323vyn88q9sf101bcwp0s0qczwzg"; depends=[RCurl RJSONIO]; };
-  OjaNP = derive2 { name="OjaNP"; version="0.9-9"; sha256="12a7zfrk3rdvfby5qa511w3nk5jpnsd5gg2z46b5s97rxb3qq7za"; depends=[ICS ICSNP Rcpp]; };
+  OjaNP = derive2 { name="OjaNP"; version="0.9-10"; sha256="1kljbnwky6b9d6sakarhw6ckrjbrpw117d81ykgl5z7l4p6cvvsh"; depends=[ICS ICSNP Rcpp]; };
   OligoSpecificitySystem = derive2 { name="OligoSpecificitySystem"; version="1.3"; sha256="17mspf1ph2ybv046zckykfdcbrsiz40hrs6ib5mpwkfnrvsp1w7l"; depends=[tkrplot]; };
   OmicKriging = derive2 { name="OmicKriging"; version="1.4.0"; sha256="08frr38yf5d0l3zwkbq9465xrbyzsn8sx9icqc3yvfnxrkhrpzig"; depends=[doParallel foreach irlba ROCR]; };
   OmicsPLS = derive2 { name="OmicsPLS"; version="1.1.0"; sha256="16q226y8wshjdry538w6zk116rip97hr5bfjyz8g960gy40pjn6j"; depends=[ggplot2]; };
+  Omisc = derive2 { name="Omisc"; version="0.1.0"; sha256="1dii0hr9sbza0vgxqgr3mzsbmx8b5189x9qi4is8zkn5nsl78pk8"; depends=[MASS psych]; };
   OnAge = derive2 { name="OnAge"; version="1.0.1"; sha256="1zby5sf92c185b5m19jv4ndgbv6mz107nc47zn1d6bijrypzpc20"; depends=[]; };
   Oncotree = derive2 { name="Oncotree"; version="0.3.3"; sha256="147rc9ci66lxbb91ys2ig40sgmldi15p604yysrd4ccbxpbk2zwf"; depends=[boot]; };
   OneArmPhaseTwoStudy = derive2 { name="OneArmPhaseTwoStudy"; version="1.0.3"; sha256="0q8g33s1jq0ipvwq83xhrly8idsh68licgyivxc628zbm1id5p38"; depends=[Rcpp]; };
@@ -2409,13 +2521,14 @@ in with self; {
   OpVaR = derive2 { name="OpVaR"; version="1.0.5"; sha256="14kq95i8n0g1wy3s32llw3803qzkxlyz9307clc1bwzi0wp22x5f"; depends=[actuar evmix goftest MASS pracma ReIns tea truncnorm vcd VineCopula]; };
   OpasnetUtils = derive2 { name="OpasnetUtils"; version="1.3"; sha256="0mmn4dpk1wl8slg55xzhpk7jdwhkrka53rwmrsr73sikkh3mcyfn"; depends=[digest ggplot2 httpRequest igraph plyr RCurl reshape2 rgdal rjson sp triangle xtable]; };
   OpenCL = derive2 { name="OpenCL"; version="0.1-3"; sha256="0f7vis0jcp0nh808xbzc73vj7kdcjb0qqzzsh3gvgamzbjfslch8"; depends=[]; };
-  OpenImageR = derive2 { name="OpenImageR"; version="1.0.8"; sha256="1j7p1wrzznrisbzw8j1qsxyyv3zr5hk6q9yxw97y6lrfh3c26ig1"; depends=[jpeg png Rcpp RcppArmadillo shiny tiff]; };
+  OpenImageR = derive2 { name="OpenImageR"; version="1.1.1"; sha256="0g2s3qgzbfmz89qiybflzqxsx60n9rr3718vg155hg117xnchr5c"; depends=[jpeg png R6 Rcpp RcppArmadillo shiny tiff]; };
   OpenML = derive2 { name="OpenML"; version="1.8"; sha256="04m2gi35hykqs4iy3ipvi41cmkv8vg145cpafjrsf98kj7jg4pmv"; depends=[backports BBmisc checkmate curl data_table digest httr jsonlite memoise mlr ParamHelpers stringi XML]; };
   OpenMPController = derive2 { name="OpenMPController"; version="0.2-5"; sha256="00hs8v47pr2d726z8izkfrgmayw147hdm16rr9rw1zs3ad216zjj"; depends=[]; };
-  OpenMx = derive2 { name="OpenMx"; version="2.9.9"; sha256="02p125r83r63zjysd94s1wvmxp1gh38dpqs3r8ly5qzdx5jzk5yf"; depends=[BH digest MASS Matrix Rcpp RcppEigen rpf StanHeaders]; };
+  OpenMx = derive2 { name="OpenMx"; version="2.11.5"; sha256="19vsy1dc25jix0jxysdwbgsv0d8yv1p62jzvv8zvrwapk0rfyy0z"; depends=[BH digest MASS Matrix Rcpp RcppEigen rpf StanHeaders]; };
   OpenRepGrid = derive2 { name="OpenRepGrid"; version="0.1.12"; sha256="02p9b2y99z9yrrm2pl86p0yqwah0yjic2wdcd4k0mhccimmmkaip"; depends=[abind colorspace GPArotation openxlsx plyr psych pvclust rgl stringr XML]; };
   OpenStreetMap = derive2 { name="OpenStreetMap"; version="0.3.3"; sha256="099vdyq0vw9xl5v7zggdb8yd4zl7x8imvvbj5j2f5hrspgg131pz"; depends=[ggplot2 raster rgdal rJava sp]; };
   Opportunistic = derive2 { name="Opportunistic"; version="1.2"; sha256="0kaj11ziij1v65l972x4kbr7vzkx4dwa27ymabiip4dg57a976wr"; depends=[]; };
+  Opt5PL = derive2 { name="Opt5PL"; version="0.1.1"; sha256="0v3ibfzmkfnkhxylhaqcd3yqygsk7027ga12vb6gj4h4zcccf17f"; depends=[matrixcalc Rcpp]; };
   OptGS = derive2 { name="OptGS"; version="1.1.1"; sha256="1acwwjng5ri5vganv7b5pagp7524ifr0q8h1pbfb5g6z3x6w08kh"; depends=[]; };
   OptHedging = derive2 { name="OptHedging"; version="1.0"; sha256="0g7qaf5abvbcqv2h1dciwn3gwpz084ryqjjk0yabdm4ym0y38ddm"; depends=[]; };
   OptInterim = derive2 { name="OptInterim"; version="3.0.1"; sha256="1ks24yv5jjhlvscwjppad27iass59da1mls99hlif0li9mvkbvyk"; depends=[clinfun mvtnorm]; };
@@ -2442,9 +2555,9 @@ in with self; {
   OutrankingTools = derive2 { name="OutrankingTools"; version="1.0"; sha256="0z7pslkkinn7flc4xwjg0bsfswf8ad4jv9rmglaj3fmjcx9b6wgj"; depends=[igraph]; };
   OxyBS = derive2 { name="OxyBS"; version="1.5"; sha256="11l3gm0jvw993jb13f6kpv77m6z0d1jswscma2v28qzkw053r3dc"; depends=[]; };
   P2C2M = derive2 { name="P2C2M"; version="0.7.6"; sha256="07ycl22v03b2xdaw4v0l6layqhab431ma38qywzm96hkl3ywvl49"; depends=[ape ggplot2 rPython stringr]; };
-  PAC = derive2 { name="PAC"; version="1.0.10"; sha256="0cr34vjd6dr5jkbv1hhd7ln35ih8h62fmz2q8h2plbxaww88zcjf"; depends=[dplyr ggplot2 ggrepel igraph infotheo parmigene Rcpp Rtsne]; };
+  PAC = derive2 { name="PAC"; version="1.1.0"; sha256="03xwrnb540487xmai34mgjvwi67szp03vmczv0aq410m6g08p5m9"; depends=[dplyr ggplot2 ggrepel igraph infotheo parmigene Rcpp Rtsne]; };
   PACBO = derive2 { name="PACBO"; version="0.1.0"; sha256="1v3j5bgvf0wh8s4d2yyz0fkc3acdwjlicwnbh1r241b1742x79cb"; depends=[mnormt]; };
-  PAFit = derive2 { name="PAFit"; version="1.0.0.4"; sha256="178hxn376q911kc6nsbkbgi7s26nhw5clzv7iiq6c7ns6dg7npr7"; depends=[igraph knitr magicaxis mapproj MASS network networkDynamic plyr RColorBrewer Rcpp VGAM]; };
+  PAFit = derive2 { name="PAFit"; version="1.0.0.7"; sha256="0yr5d7286c6k885lrh5445q5vwsl1nkgag2zwixyavk606nr5ldm"; depends=[igraph knitr magicaxis mapproj MASS network networkDynamic plyr RColorBrewer Rcpp VGAM]; };
   PAGI = derive2 { name="PAGI"; version="1.0"; sha256="01j1dz5ihqslpwp9yidmhw86l112l7rfkswmf03vss872mpvyp3f"; depends=[igraph]; };
   PAGWAS = derive2 { name="PAGWAS"; version="2.0"; sha256="0bz47ivd32kx1amgqllqbxyyvj773q7wasgk924hmibabiixa8nx"; depends=[foreach lars mnormt]; };
   PANDA = derive2 { name="PANDA"; version="0.9.9"; sha256="1sf3c49v4mb3mz2imqlqdbh1iab7bc2pxpi8bmgj2jld133555ip"; depends=[cluster GO_db]; };
@@ -2461,6 +2574,7 @@ in with self; {
   PBIBD = derive2 { name="PBIBD"; version="1.3"; sha256="0zh73bsiwmsqw1vhs2dazndsf0894kfv3vfv88wr4fnh7njysz6r"; depends=[]; };
   PBImisc = derive2 { name="PBImisc"; version="1.0"; sha256="18gjp66q6l0w6vsgm6d5sjgpa906z1gyyp6yf58lq5vyg1bnfmcl"; depends=[lme4 Matrix]; };
   PBNPA = derive2 { name="PBNPA"; version="0.0.3"; sha256="1wmgcmspilfv6pjy7696j2xmq8m41p27plnr1qr0fnzyz66pf37m"; depends=[metaRNASeq]; };
+  PBRF = derive2 { name="PBRF"; version="1.0.0"; sha256="1ibwywgbxnxcb3z2kl2bgh7fz512nhgy2zcdym67asp76c6rkqg6"; depends=[]; };
   PBSadmb = derive2 { name="PBSadmb"; version="0.68.104"; sha256="01akimdsp0bkvz3a5d75yyy3ph0mff85n8qsnr59fla5b5cm4qlj"; depends=[PBSmodelling]; };
   PBSddesolve = derive2 { name="PBSddesolve"; version="1.12.2"; sha256="12pl95mcak88524s8zvk9dzib2g40fwaz6iz7igx9wg6vib9d1sj"; depends=[]; };
   PBSmapping = derive2 { name="PBSmapping"; version="2.70.5"; sha256="15h28lb0zriaf4020l3a069plrklbvbg5x231r5fqflshj6v8a9f"; depends=[]; };
@@ -2477,27 +2591,30 @@ in with self; {
   PCIT = derive2 { name="PCIT"; version="1.5-3"; sha256="0gi28i2qd09pkaja4w7abcl7sz43jnk98897vc2905fnk9nks65j"; depends=[]; };
   PCMRS = derive2 { name="PCMRS"; version="0.1-1"; sha256="10n4am4qm23aaghf8awv2llcq7392s62yr6mf5h8nf18hfz29wrn"; depends=[cubature ltm mvtnorm Rcpp RcppArmadillo statmod]; };
   PCPS = derive2 { name="PCPS"; version="1.0.6"; sha256="0mihkivlpycqbzc3z8clsmiqg3c6hqnapk29h794lf99had03hp8"; depends=[ape phylobase picante RcppArmadillo SYNCSA vegan]; };
-  PCRedux = derive2 { name="PCRedux"; version="0.2.6-1"; sha256="0pirra4fx2s4ks34ng7fc2vjcmzym3ffpld901glf8hppycsgf6c"; depends=[bcp caret changepoint chipPCR ecp fda_usc FFTrees magrittr MBmca pbapply plotly pracma qpcR randomForest robustbase testthat visdat zoo]; };
+  PCRedux = derive2 { name="PCRedux"; version="0.2.6-4"; sha256="0nya5fx06mic7knfkzddny9lxqwk039kz0d3mf32rixwlbhrdlr5"; depends=[bcp caret changepoint chipPCR ecp fda_usc FFTrees magrittr MBmca pbapply plotly pracma qpcR randomForest robustbase testthat visdat zoo]; };
   PCS = derive2 { name="PCS"; version="1.2"; sha256="0488h6s1yz6fwiqf88z2vgckn6i0kwls8cazmpw3wspnaqvl2n4s"; depends=[multtest statmod]; };
   PCSinR = derive2 { name="PCSinR"; version="0.1.0"; sha256="1z8yjryw3c43vc6fxcwiindmyq6r63pc1zr3aybwmys6mv697bb4"; depends=[]; };
   PCovR = derive2 { name="PCovR"; version="2.7"; sha256="00920h0qlw81vwh46inmvm4mdv0dfd8xvqvrj7l038hhmjb7qsjz"; depends=[GPArotation MASS Matrix ThreeWay]; };
+  PDFEstimator = derive2 { name="PDFEstimator"; version="0.1-0"; sha256="1apw4q8x6x2hv0s5b57s667xv1k51lgqlb61xvvkfgzawvwc6x4p"; depends=[]; };
   PDM = derive2 { name="PDM"; version="0.1"; sha256="1pbdy13ji9c6krgh2r1qgrzmf4hdmrdzylsr71n3hh5jq4n9xg8x"; depends=[jpeg]; };
   PDN = derive2 { name="PDN"; version="0.1.0"; sha256="082ydvwcjc2rs7hlakrkgbbm9c419m408a14a9dgfdwm16yif3jd"; depends=[ggplot2 glmnet network survival]; };
   PDQutils = derive2 { name="PDQutils"; version="0.1.6"; sha256="0mmfi0ifwbkjm0274sddpwkj27cvdkwngnka8vdmfm4b2nn7vgsp"; depends=[moments orthopolynom]; };
   PDSCE = derive2 { name="PDSCE"; version="1.2"; sha256="17lc6d8ly6jbvjijpzg45dvqrzrh5s1sp415nycazgpbg9ypwr2h"; depends=[]; };
   PEGroupTesting = derive2 { name="PEGroupTesting"; version="1.0"; sha256="1z863ard0cc2g8ibxnmxhiqhvs53r6b8gpnavnfchm9432ifcbwi"; depends=[]; };
   PEIP = derive2 { name="PEIP"; version="2.2-1"; sha256="0bzynmd7azs33994dlsabxp29lncs1v2njp6iy5l62rwrnxj9y0a"; depends=[bvls fields geigen Matrix pracma RSEIS]; };
+  PELVIS = derive2 { name="PELVIS"; version="1.0.4"; sha256="0gw4bxck9fvkpbqls3rj0lwjcnw7i2x3f5whiglhd712j2m63ayq"; depends=[MASS shiny]; };
   PEMM = derive2 { name="PEMM"; version="1.0"; sha256="18dd9hsbdrnhrrff7gpdqrw2jv44j8lg0v3lkcdpbd4pppcaq84h"; depends=[]; };
   PET = derive2 { name="PET"; version="0.5.1"; sha256="1gdq7ai8hgl9h53b72j7sfk09l7yr2b84pdy9bl1z3x8zxbsp8br"; depends=[adimpro]; };
   PGEE = derive2 { name="PGEE"; version="1.5"; sha256="1qcxbqnbpplnfjy83nm9fj9y4abzgbxnsggzx7ix3vb9qs18cdwh"; depends=[MASS mvtnorm]; };
   PGM2 = derive2 { name="PGM2"; version="1.0-1"; sha256="03282pcq7gw47awc2mxjsbz6w3zpqjhqd7fzg8la4p00cd0vvmr4"; depends=[]; };
   PGRdup = derive2 { name="PGRdup"; version="0.2.3.3"; sha256="1s0v44922zpxl3w9kzn9xzvs5jldg35gjrnlf89f89i3rs59gg98"; depends=[data_table ggplot2 gridExtra igraph stringdist stringi]; };
   PHENIX = derive2 { name="PHENIX"; version="1.3.1"; sha256="1gd9ycrwawi81al4f5v559km1112giwqnwvvk8ynj4kdb5bqpyq4"; depends=[ppcor SuppDists]; };
+  PHEindicatormethods = derive2 { name="PHEindicatormethods"; version="1.0.8"; sha256="0ihsll6lkmg152z0r4gcckkz4f8j2vhrdiy6c7j6s4dk84s0nfcp"; depends=[dplyr rlang]; };
   PHYLOGR = derive2 { name="PHYLOGR"; version="1.0.10"; sha256="17q760k5519alr2skvpnghz3c9jgw07lh5fpw4xf6hjk3qlqq82c"; depends=[]; };
-  PHeval = derive2 { name="PHeval"; version="0.5.3"; sha256="1zq4ks6w5vrhy1f170fv16zgrgi1lfxmkpfkg75sjin7asw4i7a9"; depends=[survival]; };
+  PHeval = derive2 { name="PHeval"; version="0.5.4"; sha256="06fy5dm4mnp29f01163rw1d1hyl7rlcp4pfw18s87ckpr931qyma"; depends=[survival]; };
   PIGE = derive2 { name="PIGE"; version="1.1"; sha256="0pc24rvvxzpgrsx7xsj98n5vd462hjggakzwp36qdkib69yyr4bn"; depends=[ARTP snowfall survival xtable]; };
   PIGShift = derive2 { name="PIGShift"; version="1.0.1"; sha256="115dnsh4b1rxx1d2kc8x3vl5366h5f0i6gg8l1w3v0f8309qigis"; depends=[ape mvtnorm]; };
-  PINSPlus = derive2 { name="PINSPlus"; version="1.0.1"; sha256="02yxv1x06p6vr50g4amj4wwjlk04wadic74d1wpkxxg69zpv35lz"; depends=[cluster doParallel entropy foreach pbmcapply]; };
+  PINSPlus = derive2 { name="PINSPlus"; version="1.0.2"; sha256="0awwrrrs6vfdprlc91116qa1jsqwizf7xwhwygsi2wqx9qhsxk96"; depends=[cluster doParallel entropy foreach pbmcapply]; };
   PIPS = derive2 { name="PIPS"; version="1.0.1"; sha256="1c5v3s6xys9p1q32k6mpsffhi9gwsq951rh12hs76dmak862yspc"; depends=[]; };
   PK = derive2 { name="PK"; version="1.3-4"; sha256="1zkjq64p34gzbsbmbdqphssnplzz65wpl486qf4yhawnb4wnkj1v"; depends=[]; };
   PKI = derive2 { name="PKI"; version="0.1-5.1"; sha256="1xs3jxbczhkxnp7cyw2yh1jcwha92y9pdsbka1ligbla70bnvxyj"; depends=[base64enc]; };
@@ -2514,40 +2631,42 @@ in with self; {
   PLordprob = derive2 { name="PLordprob"; version="1.1"; sha256="1g23h3121g9csr85falm6vgzbva42wz3skhfr2rxmvlc3ca4afyp"; depends=[mnormt]; };
   PMA = derive2 { name="PMA"; version="1.0.11"; sha256="1v8h66l602zd74mw73ygsy667nqg8p0k0wqhbsjl1imafl207s5d"; depends=[impute]; };
   PMCMR = derive2 { name="PMCMR"; version="4.3"; sha256="09bvdj2h1086r2cgy3myrhlylplxxlliv8nwx09c8kb1vn02i2ij"; depends=[]; };
-  PMCMRplus = derive2 { name="PMCMRplus"; version="1.2.0"; sha256="13gn16k6gg7fv9rjx5bf6q3zfx3499s52m5k59n053nr4i5d8215"; depends=[BWStest gmp kSamples MASS multcompView mvtnorm Rmpfr SuppDists]; };
-  PMmisc = derive2 { name="PMmisc"; version="0.1.0"; sha256="12nw64x88cb1amqgdpcdmkiwcg3vs3kdlxlz0kw7frwgaw3l0l06"; depends=[robust]; };
-  PNADcIBGE = derive2 { name="PNADcIBGE"; version="0.4.1.1"; sha256="038xylgq3mp1nl5rf11swprv08khvzfw0jg5bmd0yvqmygr082jq"; depends=[dplyr magrittr RCurl readr readxl survey timeDate]; };
+  PMCMRplus = derive2 { name="PMCMRplus"; version="1.4.0"; sha256="1x3x2fhbihjfipkwdykqfb1i70dgj1wy785wb5w98ddwzfknkjrq"; depends=[BWStest gmp kSamples MASS multcompView mvtnorm Rmpfr SuppDists]; };
+  PMmisc = derive2 { name="PMmisc"; version="0.1.1"; sha256="1wyafrq9j212bbmpp6lnspxib6ca9860vp3xm9ndn8b374hv7s6r"; depends=[robust]; };
+  PMwR = derive2 { name="PMwR"; version="0.10-1"; sha256="0z32cfa46mhmwnvlqpw6md9dyyy2hn5mwlrf2v4lx1b1gxqskjpd"; depends=[crayon datetimeutils fastmatch NMOF orgutils textutils zoo]; };
+  PNADcIBGE = derive2 { name="PNADcIBGE"; version="0.4.3"; sha256="1mckjb6q7ffvzsifjwc411p9r1vykvczk6v7lcsmpzliifgc0ys4"; depends=[dplyr magrittr RCurl readr readxl survey timeDate]; };
+  POCRE = derive2 { name="POCRE"; version="0.5.0"; sha256="0aph1lmb0xkzm4l4ah2wrx13d138igf4k4w9wb9lca4vv6m7xzqf"; depends=[EbayesThresh ggplot2 pracma]; };
   POET = derive2 { name="POET"; version="2.0"; sha256="0w3jhj45sxisyrpcsazbrbcsz7rmraw71jjm0zixbcgc4klb98ar"; depends=[]; };
   POMaSPU = derive2 { name="POMaSPU"; version="1.0.0"; sha256="0jz3jgzdykv0xvfw3ix0hbs32as6dp7p5v8bj5nddknx10d0siya"; depends=[MASS matrixStats Rcpp RcppArmadillo]; };
   POPdemog = derive2 { name="POPdemog"; version="1.0.3"; sha256="0j83c853ligmw8ag4pb0vj46sfn2w2ynh4wvgkabzs688hxxni8r"; depends=[]; };
   POT = derive2 { name="POT"; version="1.1-6"; sha256="08av53rnishk3mhwrb6ydbgc3n9nwi87jlx5vmag3vpiidhn1laj"; depends=[]; };
   PP = derive2 { name="PP"; version="0.6.1"; sha256="10innn1nhc4zqimd0gww7k3k30jkfkkj89zkddcjqa2sqq5gs3xr"; depends=[Rcpp]; };
   PP3 = derive2 { name="PP3"; version="1.2"; sha256="1g36al9w1rxyhfzbvpw9siqq57h2xl0zr94wysz8i0jzqkkqkrvf"; depends=[]; };
-  PPCI = derive2 { name="PPCI"; version="0.1.2"; sha256="1k6kbln0h1wkzg594k1db6r3nk5dqwhg8gm1hgval05dsdhp8j8b"; depends=[rARPACK]; };
+  PPCI = derive2 { name="PPCI"; version="0.1.4"; sha256="18q9jjmmmmghwyzpj42k7xa55anvbg1jnqs2y6c5jzlb2cw3ga4h"; depends=[rARPACK]; };
   PPQplan = derive2 { name="PPQplan"; version="0.1.0"; sha256="06v4agq8bd3ssbfnl1jyfzy5xi4jwj6wqfmj9qalrv9kllh839mv"; depends=[ggplot2 plotly tolerance]; };
   PPforest = derive2 { name="PPforest"; version="0.1.1"; sha256="0iplbw5b2vhqbp6gc123ykzmilwa80akljkv3jzfmi90ckm4k08m"; depends=[doParallel dplyr magrittr plyr Rcpp RcppArmadillo tidyr]; };
   PPtree = derive2 { name="PPtree"; version="2.3.0"; sha256="002qjdx52r2h90wzrf2r3kz8fv3nwx08qbp909whn6r4pbdl532v"; depends=[MASS penalizedLDA]; };
   PPtreeViz = derive2 { name="PPtreeViz"; version="2.0.3"; sha256="1x5rcls49jz19y3h98n2k4kypm8mv8p586clhdj62bvp2nl8wg3x"; depends=[ggplot2 gridExtra partykit Rcpp RcppArmadillo]; };
-  PQLseq = derive2 { name="PQLseq"; version="1.0"; sha256="1r4zxwb3rw7k9jixv1wqkgdq5zjlwf85xrc0np8j96k1gdwals72"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo]; };
+  PQLseq = derive2 { name="PQLseq"; version="1.1"; sha256="1h8baf0apxvimarr2qwlh6pdzv88ib1dzw927swsyimjg44wjbfc"; depends=[doParallel foreach Matrix Rcpp RcppArmadillo]; };
   PRIMME = derive2 { name="PRIMME"; version="2.2-0"; sha256="1iwwh871v87fz6j6q9nvfiq8x8nz2v87n52l80a15d5rvvxv2rbi"; depends=[Matrix Rcpp]; };
-  PRIMsrc = derive2 { name="PRIMsrc"; version="0.7.5"; sha256="12wfb4p8ra1b8xwq42350cxl2fy9gsrp5m7inyxnh31vplgripy9"; depends=[glmnet Hmisc quantreg superpc survival]; };
+  PRIMsrc = derive2 { name="PRIMsrc"; version="0.8.2"; sha256="04g1saf511xs26m1iv9xfsmfs15fdfaxh5qlbay2mcb198270pd8"; depends=[glmnet Hmisc quantreg superpc survival]; };
   PRISM_forecast = derive2 { name="PRISM.forecast"; version="0.1.6"; sha256="0w0fjbaafq90ac35h70z8g95q1i812v0ivkif4lx8l3q7rhjrvb5"; depends=[glmnet xts zoo]; };
   PRISMA = derive2 { name="PRISMA"; version="0.2-7"; sha256="0sk2d07m8rhipa0kdbaf8ngryda6f1ihp5akpnyw2llajf0x8as5"; depends=[ggplot2 gplots Matrix]; };
-  PRISMAstatement = derive2 { name="PRISMAstatement"; version="1.0.1"; sha256="1qk9cljk52m8rcasck8cl7gwzhcsx0p58jn31izy2j027w0rns7j"; depends=[DiagrammeR]; };
+  PRISMAstatement = derive2 { name="PRISMAstatement"; version="1.0.4"; sha256="0rsffbmaaqa6zkgh7bg1l91xfk8ri7b1w6ghid44xvj3k22y0kj6"; depends=[DiagrammeR]; };
   PROTOLIDAR = derive2 { name="PROTOLIDAR"; version="0.1"; sha256="0bz3071b0wlcvh40vl3dyiiixk5avsj6kjjnvlvx264i5g08rij4"; depends=[]; };
   PROreg = derive2 { name="PROreg"; version="1.0"; sha256="0c2vgzbdi29rlrnrb971dqrl7rlb9y3rw8nj5rjgwsjqxv607ssj"; depends=[car fmsb Matrix matrixcalc numDeriv RColorBrewer rootSolve]; };
   PROscorer = derive2 { name="PROscorer"; version="0.0.1"; sha256="0mgj0mi0vzdk0agimsx4k9i4bss0j5lqiayzhldr1hrqrx2a4f3d"; depends=[PROscorerTools]; };
   PROscorerTools = derive2 { name="PROscorerTools"; version="0.0.1"; sha256="1vliffkfqdn5l96bncfgayv19i20kmawlxi8q853wamj6npdpv5r"; depends=[]; };
   PRROC = derive2 { name="PRROC"; version="1.3.1"; sha256="1m28h8pcd78049lz2qixhkcr9h5b3jik3maqzfbvq9y58z71i4a7"; depends=[]; };
-  PReMiuM = derive2 { name="PReMiuM"; version="3.2.0"; sha256="0aib10kalc8y1vdkbd8ipdkg9wyb984pwf979fm8d6jjbdhp0sa7"; depends=[ald BH cluster data_table gamlss_dist ggplot2 plotrix Rcpp RcppEigen]; };
+  PReMiuM = derive2 { name="PReMiuM"; version="3.2.1"; sha256="0cn08w7kw0j0z8nqv380m7xs35f4mlhzx0jyzyqk811v9jzk0jii"; depends=[ald BH cluster data_table gamlss_dist ggplot2 plotrix Rcpp RcppEigen rgdal spdep]; };
   PResiduals = derive2 { name="PResiduals"; version="0.2-5"; sha256="05jk543lv8isbxv24cbzqh80l6xs05lx2k9xzz7s0121vb2yd3v4"; depends=[Formula MASS rms SparseM]; };
   PSAgraphics = derive2 { name="PSAgraphics"; version="2.1.1"; sha256="05c0k94dxddyrhsnhnd4jcv6fxbbv9vdkss2hvlf3m3xc6jbwvh9"; depends=[rpart]; };
-  PSCBS = derive2 { name="PSCBS"; version="0.63.0"; sha256="0pgha1rvb9nfxkr8fxc17zgws781qwmrl01rss7bd0sf2n2lw2k2"; depends=[DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; };
+  PSCBS = derive2 { name="PSCBS"; version="0.64.0"; sha256="02970zk7gkwi1d6mp82z1mbg8pjxf1pdwwv8j9wiqyfdily935i1"; depends=[aroma_light DNAcopy future listenv matrixStats R_cache R_methodsS3 R_oo R_utils]; };
   PSF = derive2 { name="PSF"; version="0.4"; sha256="1hjry8vjqr6zk2i2ppf3fcpsr4v4jm1705qv6i1iz2agl6g2rcnp"; depends=[cluster data_table forecast knitr]; };
   PSIMEX = derive2 { name="PSIMEX"; version="1.1"; sha256="0cndzasvg4y49incyd9nfz8y3z88ywbc7xk0zzjir665pv2xn23b"; depends=[knitr MCMCglmm pedigree plotrix]; };
   PSLM2015 = derive2 { name="PSLM2015"; version="0.2.0"; sha256="1f8kzlqil2ac8a9fbj9fhdni2narh2yaaz044mlx7gsv2ns3ai19"; depends=[dplyr ggplot2 magrittr]; };
   PSM = derive2 { name="PSM"; version="0.8-12"; sha256="0h83b7bhslgnrq4442464i9iil6gjhw3pwxvgz5313pfk2km30vg"; depends=[deSolve MASS numDeriv ucminf]; };
-  PSPManalysis = derive2 { name="PSPManalysis"; version="0.2.0"; sha256="0vya2zlsmgf6zmkk9k9aaaqkx7qprknl0wazqlqd7zdp8z0zj39j"; depends=[devtools]; };
+  PSPManalysis = derive2 { name="PSPManalysis"; version="0.2.1"; sha256="1vc13klv1iwyxb4srv4hi88v62hxbm244fg1lj8k5z11kmyii80n"; depends=[pkgbuild]; };
   PST = derive2 { name="PST"; version="0.94"; sha256="0f28zrnlficbi9iil6wbh51k9mghpkz63hw05lpmlpx1yl5nd0a6"; depends=[RColorBrewer TraMineR]; };
   PSTR = derive2 { name="PSTR"; version="1.2.1"; sha256="0vydm3s7m6fkwfnrfs29hwq7z5zfhrxx1ryvr3wrw1481ir29nc2"; depends=[ggplot2 magrittr plotly snowfall tibble]; };
   PSW = derive2 { name="PSW"; version="1.1-3"; sha256="0ahm7rp795d7j88n15b3q0gl573p3g0krc7jd1zv87g4bsdc9b5x"; depends=[gtools Hmisc]; };
@@ -2558,11 +2677,11 @@ in with self; {
   PVAClone = derive2 { name="PVAClone"; version="0.1-6"; sha256="0fj5p3z2cwnyshrr4rq88wpij2xax5p4aq0x4p342kadx9d6x2ga"; depends=[coda dclone dcmle]; };
   PVR = derive2 { name="PVR"; version="0.3"; sha256="0pcnazkiwmicr3k6k70r8skqk0pd46fcqhhxghawxjs4slgnygkj"; depends=[ape MASS splancs]; };
   PWD = derive2 { name="PWD"; version="1.0"; sha256="0ksr3biaqd4p5a4lv28i4cwk1fn9822ndq2161mgvc1c344p06fj"; depends=[Rcpp RcppArmadillo]; };
-  PWEALL = derive2 { name="PWEALL"; version="1.2.1"; sha256="08a7ih9yyp0dqw89n1qhwbxhgiks91c3wjbaz08b6ck6cv6gzy6k"; depends=[survival]; };
-  PWFSLSmoke = derive2 { name="PWFSLSmoke"; version="1.0.20"; sha256="0g15ib0zks6q7swpd9s5zyl3sp83r54959ckvc88wn19bmn8dj9l"; depends=[cluster dplyr dygraphs futile_logger ggmap httr jsonlite leaflet lubridate magrittr mapproj maps maptools MazamaSpatialUtils openair png raster RColorBrewer readr reshape2 rgdal RgoogleMaps sp stringr xts zoo]; };
+  PWEALL = derive2 { name="PWEALL"; version="1.3.0"; sha256="0nb0v6wvj9ay90qcbrr9drg2g84fb7a9m78pzb69wp8789i8ixhk"; depends=[survival]; };
+  PWFSLSmoke = derive2 { name="PWFSLSmoke"; version="1.1.3"; sha256="0wybb5ygcvz5w2sl26rwm7hg6681lzcyr5v1nl7lb72z565f1wqw"; depends=[cluster dplyr dygraphs futile_logger ggmap httr jsonlite leaflet lubridate magrittr mapproj maps maptools MazamaSpatialUtils openair png raster RColorBrewer readr reshape2 rgdal RgoogleMaps rlang sp stringr tibble tidyr xts]; };
   PabonLasso = derive2 { name="PabonLasso"; version="1.0"; sha256="158xg9i13nqy1bnpch8r6a7yas01hsdidmcypgccmyh7d7l52mr1"; depends=[]; };
   Pade = derive2 { name="Pade"; version="0.1-4"; sha256="1kx5qpxd3x43bmyhk8g2af44hz3prhnrzrm571kfjmak63kym741"; depends=[]; };
-  PairViz = derive2 { name="PairViz"; version="1.2.1"; sha256="0mjp5p6n5azbhrm2hvb9xyqjfhd49pw9ia8k70749yc96ws1qqc7"; depends=[graph gtools TSP]; };
+  PairViz = derive2 { name="PairViz"; version="1.3.2"; sha256="01nzf7as848i3vpwgdm450x3f5lapfh2vgd59sy6qr80c19nfjl9"; depends=[graph gtools TSP]; };
   PairedData = derive2 { name="PairedData"; version="1.1.1"; sha256="07y5fd4fkwfp0lbacf41ya8cn7x4n1haxl0cln9iibjffc1mbr5q"; depends=[ggplot2 gld lattice MASS mvtnorm]; };
   PairwiseD = derive2 { name="PairwiseD"; version="0.9.62"; sha256="19qjms99gf7s39nwwgj56n8426d0gw80dipz165sk3km4zb2mcwv"; depends=[openxlsx xlsx]; };
   PakPC2017 = derive2 { name="PakPC2017"; version="1.0.0"; sha256="196jvhv7pv4pvnnz9izk6icxv3aml26mif0w6g4907izyszf8cal"; depends=[dplyr magrittr]; };
@@ -2575,7 +2694,7 @@ in with self; {
   Paneldata = derive2 { name="Paneldata"; version="1.0"; sha256="00hk340x5d4mnpl3k0hy1nypgj55as2j7y2pgzfk3fpn3zls5zib"; depends=[]; };
   ParDNAcopy = derive2 { name="ParDNAcopy"; version="2.0"; sha256="017xwznhfibi8kp0ifww02c0qcq0vxs06rjww4kcp2bvdmld8kc4"; depends=[DNAcopy]; };
   ParallelForest = derive2 { name="ParallelForest"; version="1.1.0"; sha256="1xa9lfgrvzv7bvv1aaabcfk4372p8x5gxgj463h5ggf9x177lj5j"; depends=[]; };
-  ParallelLogger = derive2 { name="ParallelLogger"; version="1.0.0"; sha256="16mwfylpk7r6cy87vb1d1h8mkwn32cmygpqvy5kk538lj9b8jcdl"; depends=[jsonlite snow XML]; };
+  ParallelLogger = derive2 { name="ParallelLogger"; version="1.0.1"; sha256="01wb7rqlyp07ahcr4gs0jh92z56v9dsgkbp18y2xdnl7z533fjbh"; depends=[jsonlite snow XML]; };
   ParallelPC = derive2 { name="ParallelPC"; version="1.2"; sha256="07y7xb16865khxkvwsk1yglzyy7ja4aj2wpkipaz48i77c3x8bi2"; depends=[]; };
   ParallelTree = derive2 { name="ParallelTree"; version="0.1.2"; sha256="0x99x1iycx8ik8cih972awnxifvmhbrmjrf2csmnn9fw4rsqn0p5"; depends=[ggplot2]; };
   ParamHelpers = derive2 { name="ParamHelpers"; version="1.11"; sha256="181p2r4zh53v6hjdr8fn7m1g65rl4svql8h1zjz25y1chk0g850n"; depends=[backports BBmisc checkmate fastmatch]; };
@@ -2589,18 +2708,18 @@ in with self; {
   Peacock_test = derive2 { name="Peacock.test"; version="1.0"; sha256="0ypvwywipyh8lm8xkazsfjgjpvvyi2g8kid63qff11372p33m6xs"; depends=[]; };
   PeakError = derive2 { name="PeakError"; version="2017.06.19"; sha256="1d4v7s478zjz42dm6ps4nnqqyyqv84dgmzn1bp1a4qwnfv9vmfg7"; depends=[]; };
   PeakSegDP = derive2 { name="PeakSegDP"; version="2017.08.15"; sha256="1ndf4d4ikcyqi0k51kil2jw777z4c1m4pda3dahrjmjyz0jhrhkw"; depends=[]; };
-  PeakSegJoint = derive2 { name="PeakSegJoint"; version="2017.08.11"; sha256="1xp0gxdwsy6z06kbfg5ca2qm0kwva8scxbg22km20cikwpgdi6rm"; depends=[data_table PeakError penaltyLearning]; };
+  PeakSegJoint = derive2 { name="PeakSegJoint"; version="2018.10.3"; sha256="0f0dw6swhhf301j4ci3rs8cmzd39dcjlb0kqxpdh7f00gp3qn7da"; depends=[PeakError penaltyLearning]; };
   PeakSegOptimal = derive2 { name="PeakSegOptimal"; version="2018.05.25"; sha256="0j39jzy4r0h787vs3klgbpcmb096ds3hzhvv5w3xs53kl0qkypj4"; depends=[penaltyLearning]; };
   Peaks = derive2 { name="Peaks"; version="0.2"; sha256="0a173p5cdm1jnm7bwsvjpxh4dccy593g02c4qjwky1cgzy5rvin2"; depends=[]; };
   PearsonDS = derive2 { name="PearsonDS"; version="1.1"; sha256="0rqh9ji0bah3n1c6fcg7krgqs65qla9p3xrnc4jr7va6ph104im9"; depends=[]; };
   PearsonICA = derive2 { name="PearsonICA"; version="1.2-4"; sha256="0jkbqha1nb9pf72ffki47wymsdmd50smkdhvpzvanv4y2rmqfhvg"; depends=[]; };
   PedCNV = derive2 { name="PedCNV"; version="0.1"; sha256="09qxcjzwdgzdkbj28rzmfv7k3q2qsiapnvx3m45a835r57h5gynp"; depends=[ggplot2 Rcpp RcppArmadillo]; };
-  PeerPerformance = derive2 { name="PeerPerformance"; version="2.1.2"; sha256="07as5csvrlr3a55miadhbcvjrjag7g69wxmb8z7rpipppa8f9q7y"; depends=[lmtest sandwich snow]; };
+  PeerPerformance = derive2 { name="PeerPerformance"; version="2.2.1"; sha256="1igh8svdbxkcfgi2s70cpwdcy7jb4yhxias80vck203skyiq97vx"; depends=[lmtest sandwich]; };
   PenCoxFrail = derive2 { name="PenCoxFrail"; version="1.0.1"; sha256="0snjf8jxzyf30xj3wx9p6g073dqw592l1j1c6yxfg8y4kgzhzwq7"; depends=[Matrix Rcpp RcppArmadillo survival]; };
   PepPrep = derive2 { name="PepPrep"; version="1.1.0"; sha256="1s2xn05xry50l9kf1mj6yd1dpc7yp6g3d00960hswvhznb0a4l84"; depends=[biomaRt stringr]; };
   PepSAVIms = derive2 { name="PepSAVIms"; version="0.9.1"; sha256="0m4jrq6wcjy0k80gvrnm9f7kvi1ifx9182xfq0psyaxpj0ggvzij"; depends=[elasticnet]; };
   Peptides = derive2 { name="Peptides"; version="2.4"; sha256="1i5p0z4zhis4p1czwz3cryr64lys4dp2fddnmmasgspl8fyz8p05"; depends=[Rcpp]; };
-  PerFit = derive2 { name="PerFit"; version="1.4.2"; sha256="147f2fbcjb0639h0bmiikli05r3jlbp559hj9v9af3s09l1l6v8y"; depends=[fda Hmisc irtoys ltm MASS Matrix mirt]; };
+  PerFit = derive2 { name="PerFit"; version="1.4.3"; sha256="0qmh78wrx3vzz41z30db3bb62n325blphjhpzdzykfx77gr8plyr"; depends=[fda Hmisc irtoys ltm MASS Matrix mirt]; };
   PerMallows = derive2 { name="PerMallows"; version="1.13"; sha256="0ny2vc8f0npixaw1kp2d93xr4g46nsg8jjwvi6afv9xjvaz0i6wy"; depends=[Rcpp]; };
   Perc = derive2 { name="Perc"; version="0.1.2"; sha256="0p6l4b536jjz4lmgsdrxqsh77lx4vkb6hbyd6vhbc102m5x3b1yc"; depends=[]; };
   PerfMeas = derive2 { name="PerfMeas"; version="1.2.1"; sha256="1x7ancmb41zd1js24rx94plgbssyc71z2bvpic6mg34xjkwdjw93"; depends=[graph limma RBGL]; };
@@ -2611,18 +2730,20 @@ in with self; {
   PetfindeR = derive2 { name="PetfindeR"; version="1.1.3"; sha256="1dkiawadfsb8akssnhddd64bn6dq6r95c7j4g3mkbq6fs9106h8x"; depends=[dplyr httr jsonlite plyr]; };
   PhViD = derive2 { name="PhViD"; version="1.0.8"; sha256="038pw24sb8ja8pbbmj05rww6413i2ljybb2dxwgrpffv22aqawmc"; depends=[LBE MCMCpack]; };
   PharmPow = derive2 { name="PharmPow"; version="1.0"; sha256="0gabkd8p4zsig9p697lyk8m2jxb5abjk81rpzd5ih1yk1qanhsn5"; depends=[scatterplot3d]; };
-  Phase123 = derive2 { name="Phase123"; version="1.5"; sha256="05yvzx0sf6dq47nr5bk1kd2icndf20z39y9fj90zqdm3ay2hi586"; depends=[Rcpp RcppArmadillo survival]; };
+  Phase123 = derive2 { name="Phase123"; version="1.8"; sha256="0n3prfbsav36an13q5bkxprchqf7i8m1mv1nivkcqxngiah8z1md"; depends=[Rcpp RcppArmadillo survival]; };
   PhaseType = derive2 { name="PhaseType"; version="0.1.3"; sha256="092dqyqfaxj8qpwxcjb5cayhnq597rfjz1xb93ps4nrczycqs0l6"; depends=[coda ggplot2 reshape]; };
-  PhenotypeSimulator = derive2 { name="PhenotypeSimulator"; version="0.2.2"; sha256="1mr4jq44ijdiabp3simfjh9zcl9anp1w0dili6w5sq8dzgids8gj"; depends=[data_table dplyr ggplot2 mvtnorm optparse R_utils Rcpp reshape2 snpStats zoo]; };
+  PhenotypeSimulator = derive2 { name="PhenotypeSimulator"; version="0.3.1"; sha256="08bchanqs5ljihzxqy77vvq4kzqwn733jkppjdk4w6g65mq211bl"; depends=[data_table dplyr ggplot2 mvtnorm optparse R_utils Rcpp reshape2 snpStats zoo]; };
   Phxnlme = derive2 { name="Phxnlme"; version="1.0.0"; sha256="0h9mi8p95rp1s8xsdv38j9fpy2cy9zvjnldjmnj0n469kimp2782"; depends=[ggplot2 gridExtra lattice manipulate testthat]; };
   PhyInformR = derive2 { name="PhyInformR"; version="1.0"; sha256="10d720ww909b1xmdrms554pnn0757nzppnrniar4n157mh0qw7ms"; depends=[ape doParallel foreach geiger ggplot2 gplots gridExtra hexbin iterators PBSmodelling phytools RColorBrewer]; };
+  PhySortR = derive2 { name="PhySortR"; version="1.0.8"; sha256="19426xjdii74qds0wmq5sa88zys81nyqb9lvf9pfihbjgrjr770a"; depends=[ape phytools]; };
   PhyloMeasures = derive2 { name="PhyloMeasures"; version="2.1"; sha256="01axs78s10y1bkx8dbs9vvnphdzik7hpibkwyib1x9mznmyg90hr"; depends=[ape]; };
-  PhylogeneticEM = derive2 { name="PhylogeneticEM"; version="1.1.0"; sha256="0ji78zx0gp1nd5assrmwxdkxryfjijnn9g34w2g2qv32s1fdj6ak"; depends=[ape capushe foreach glmnet grplasso LINselect MASS Matrix plyr Rcpp RcppArmadillo robustbase]; };
+  PhylogeneticEM = derive2 { name="PhylogeneticEM"; version="1.2.1"; sha256="0mrlyaj15y1dzlnn13phjq64immad08wn99sv9zdixf7ybdvwwnv"; depends=[ape capushe foreach gglasso glmnet LINselect MASS Matrix plyr Rcpp RcppArmadillo robustbase]; };
   PhysActBedRest = derive2 { name="PhysActBedRest"; version="1.0"; sha256="0gmqh700cf6aiagb45iyyf85pgp3b86fx7fbv9lrsm4mda0r8h75"; depends=[chron lubridate stringr]; };
   PhysicalActivity = derive2 { name="PhysicalActivity"; version="0.2-2"; sha256="14z6plgwyr46vs9m997rvlz8sdglfs9g087an8668zqkzzs2w4ln"; depends=[]; };
   PieceExpIntensity = derive2 { name="PieceExpIntensity"; version="1.0.4"; sha256="023hq0gg1vi0j3yf8p5lisgs8wfp5qwyd4akxxzx7wad2985gxb3"; depends=[Rcpp RcppArmadillo]; };
   Pijavski = derive2 { name="Pijavski"; version="1.0"; sha256="1027lmmk17br9zxah980j6l3k2p92065bwigw6gpy9g0g5jjl4f1"; depends=[Rcpp]; };
   PivotalR = derive2 { name="PivotalR"; version="0.1.18.3"; sha256="14l7y57zmfr7h4bq01j83am2plxx320kkhbsh0x2ypif9dni4rf2"; depends=[Matrix]; };
+  PkgsFromFiles = derive2 { name="PkgsFromFiles"; version="0.5"; sha256="1fbvnlw6hxg6zndyrssiw5yyp6hz3ln985by3vwp34sfwdcwjakl"; depends=[curl dplyr readr stringdist stringr XML]; };
   PlackettLuce = derive2 { name="PlackettLuce"; version="0.2-3"; sha256="1w2ihclnh3x83ip4hh95bchv5j832cqy6n140q5q1dbfz6fy1bxv"; depends=[igraph MASS Matrix partykit psychotools psychotree qvcalc rARPACK sandwich]; };
   Planesmuestra = derive2 { name="Planesmuestra"; version="0.1"; sha256="0v7l4hrfckcf7zmk0ihq2ij0qli7x12j17vd6752d1yjk27fgk57"; depends=[]; };
   PlasmaMutationDetector = derive2 { name="PlasmaMutationDetector"; version="1.7.2"; sha256="0qra7q2pzw212qylyrfhv6zjcsldfw84b93cari0qjqnw4gyfph2"; depends=[GenomicRanges ggplot2 robustbase Rsamtools rtracklayer S4Vectors SummarizedExperiment VariantAnnotation]; };
@@ -2648,7 +2769,7 @@ in with self; {
   PolynomF = derive2 { name="PolynomF"; version="1.0-2"; sha256="0zczryvjykr7yifb5isvys2mzgi0yj92j3p3xixn2qzzq9cr0h9a"; depends=[]; };
   Pomic = derive2 { name="Pomic"; version="1.0.4"; sha256="0xy5fgimbgqqac3n7akhwyvnrvd9fpvx9h8nk4spxrxc8x0km1w7"; depends=[]; };
   PooledMeanGroup = derive2 { name="PooledMeanGroup"; version="1.0"; sha256="0i9s7qskjnji3mf6clsi69rnni57v8cysgr9gh3hvxjzlf1sq8y7"; depends=[]; };
-  PopED = derive2 { name="PopED"; version="0.3.2"; sha256="1lvzqpij4dqbw144ya25bhlx96mwaxz932r0bl3jsx1si9ijb8xz"; depends=[codetools dplyr ggplot2 MASS mvtnorm]; };
+  PopED = derive2 { name="PopED"; version="0.4.0"; sha256="1cj6nj5w4ckvnldpc7g4mxdps619zlhzsdibd9ih8i2lxh1xbrfz"; depends=[boot codetools dplyr ggplot2 magrittr MASS mvtnorm purrr stringr tibble tidyr]; };
   PopGenKit = derive2 { name="PopGenKit"; version="1.0"; sha256="0l4mbm0cyppgvcw2cbimrv29aiciyj00k8wfwcj5zr8sh7fgfhs4"; depends=[]; };
   PopGenReport = derive2 { name="PopGenReport"; version="3.0.0"; sha256="0z4g7ll3dk9mgawnn7k0ysgj8w55adivc4zcrr898x399g7vnfx4"; depends=[ade4 adegenet calibrate data_table dismo gap gdistance genetics GGally ggplot2 knitr lattice mmod pegas plyr R_utils raster reshape rgdal RgoogleMaps sp vegan xtable]; };
   PopGenome = derive2 { name="PopGenome"; version="2.6.1"; sha256="074vfyfhlqnc38jb0shwp5a4ikvb4jflfghmg88h3a2za3nj4abs"; depends=[ff]; };
@@ -2659,26 +2780,26 @@ in with self; {
   PortfolioEffectHFT = derive2 { name="PortfolioEffectHFT"; version="1.8"; sha256="0y4x0d91j6g52136d921hfs5swzf85gkxafxfkf3c15dl5ns120v"; depends=[ggplot2 rJava zoo]; };
   PortfolioOptim = derive2 { name="PortfolioOptim"; version="1.0.3"; sha256="1s9msqjxqxqafhncc3hi5prhzl5cj0incd5rc9fxc23l5l4n9xjx"; depends=[Rglpk]; };
   PottsUtils = derive2 { name="PottsUtils"; version="0.3-3"; sha256="165k4sjh3kqkb8bzi68wx00yl77yfbgs70fcbpzmsmcw4g4hdpzn"; depends=[miscF]; };
-  PoweR = derive2 { name="PoweR"; version="1.0.6"; sha256="0p2v07wp1hqmmbf7b3mh0v4n5hbbcms9xkdhjzdfxkkbafxybc24"; depends=[Rcpp RcppArmadillo]; };
+  PoweR = derive2 { name="PoweR"; version="1.0.7"; sha256="040wc7hxa8y6bm1rs7ip2skdxmmwksxkyb6xzqgdjp8m7a25fppb"; depends=[Rcpp RcppArmadillo]; };
   Power2Stage = derive2 { name="Power2Stage"; version="0.5-1"; sha256="155w5yp0pdq4g3638m0c54i81lfk0g0f339hzbxpkxhs8ds7g2zv"; depends=[cubature mvtnorm PowerTOST]; };
   PowerNormal = derive2 { name="PowerNormal"; version="1.2.0"; sha256="1kryqcjvgwk0l4z3gqxdiz47mha3jw5583jlb9z7ml6v7cam06sm"; depends=[]; };
   PowerTOST = derive2 { name="PowerTOST"; version="1.4-7"; sha256="02k6jn5dw70518g55bchax0l5gkci827lqwwyxwnn6rzs3mx4ybs"; depends=[cubature mvtnorm TeachingDemos]; };
-  PowerUpR = derive2 { name="PowerUpR"; version="1.0.0"; sha256="04lc6xjwwy9wxd7pg1wm5vg0bq3194cp0r7i72da7c10b31frdh1"; depends=[]; };
-  PracTools = derive2 { name="PracTools"; version="0.9"; sha256="0yra18is5pdwzw3vc5sk53g89n5rz1hpn8zlvcx541nxr43i69sd"; depends=[]; };
+  PowerUpR = derive2 { name="PowerUpR"; version="1.0.1"; sha256="1m7w3851kpnf7nnajh9w427cjpyiz18gmqhqvd4gz4gdwqpl6chz"; depends=[]; };
+  PracTools = derive2 { name="PracTools"; version="1.1"; sha256="19yyhri8wr7ki62zhl9bhpf0wbx9fhrfph44j4l65kx68aphl22d"; depends=[]; };
   PreKnitPostHTMLRender = derive2 { name="PreKnitPostHTMLRender"; version="0.1.0"; sha256="1749cd734f4bf0n4068s2m617k6as8h9bwp44mm3la2xy3vjf5g1"; depends=[knitr rmarkdown XML]; };
   PreProcess = derive2 { name="PreProcess"; version="3.1.5"; sha256="049gdrp4kwvsid2bn12f61557qgpfv8cpzrd1b4ml47jpw8w0xdk"; depends=[oompaBase]; };
   PreciseSums = derive2 { name="PreciseSums"; version="0.3"; sha256="02w0pa9dd196sg6zg9w2fp4b0k6wibbw9rbvasr3aphh98kbd6ch"; depends=[]; };
   PredPsych = derive2 { name="PredPsych"; version="0.3"; sha256="0bqc2vl32z9wzby7ncrab742cajy4w5kq7wv2gh2jjqdnv9nkia7"; depends=[caret e1071 ggplot2 MASS mclust party plyr randomForest rpart statmod]; };
   PredictABEL = derive2 { name="PredictABEL"; version="1.2-2"; sha256="08c7j2in1wlas6nmy44s08cq86h5fizqbhsnq312dllqdzmb2h9s"; depends=[epitools Hmisc PBSmodelling ROCR]; };
+  PredictionR = derive2 { name="PredictionR"; version="1.0-11"; sha256="1dljdbya93dirx715yqs4vz7hbbcwpgrsvyfgikkm2fj28nnn6k9"; depends=[fitdistrplus]; };
   PredictiveRegression = derive2 { name="PredictiveRegression"; version="0.1-4"; sha256="15vkisj3q4hinc3d537s8inhj3wk62q67qhy050xmp9j563ainmd"; depends=[]; };
   PresenceAbsence = derive2 { name="PresenceAbsence"; version="1.1.9"; sha256="17qn4ggkr5aqml45nkihj1j35y479ywkm1xcfkb2g8ky66jb0c0s"; depends=[]; };
-  PrevMap = derive2 { name="PrevMap"; version="1.4.1"; sha256="1hmvfk5zpflwncaiy2rr0jr2gr2gk66na6ks82b6dfgk8xdc8xmk"; depends=[geoR Matrix maxLik numDeriv pdist raster splancs truncnorm]; };
+  PrevMap = derive2 { name="PrevMap"; version="1.4.2"; sha256="0iblmr2qapkhk2156xgkbr19fgz902vb79ssjpsm1w62f1i5ka9r"; depends=[geoR Matrix maxLik numDeriv pdist raster splancs truncnorm]; };
   PriorGen = derive2 { name="PriorGen"; version="1.1.2"; sha256="0qvdqqdy7wdwwcq95mkgfyf7xf6xlpwdfs3gq299yyv2ba57flnm"; depends=[rootSolve]; };
   PrivateLR = derive2 { name="PrivateLR"; version="1.2-22"; sha256="0d142fa3wk7yadvs8jszajs6hq9m03p0j6h5r4pbw7j0d1l72hgc"; depends=[]; };
   ProDenICA = derive2 { name="ProDenICA"; version="1.0"; sha256="04gnsnd0xzw3bfbssdp06bar0lk305ry2c97pmwxgiz3ay88dfsj"; depends=[gam]; };
-  ProFit = derive2 { name="ProFit"; version="1.1.2"; sha256="0z8prfmjx9zs7cqd316pc5iy3mg9vldcl12d3mk8llpvynn86ja3"; depends=[celestial cubature fftw FITSio LaplacesDemon magicaxis RColorBrewer Rcpp]; };
-  ProFound = derive2 { name="ProFound"; version="1.0.1"; sha256="0ym8ggzm0b8zpfsq8xjjnwa09826gssaqhrqjyq88pwbhzh0y4pl"; depends=[celestial data_table FITSio magicaxis]; };
-  ProNet = derive2 { name="ProNet"; version="1.0.0"; sha256="10r0gcxv0djrw99nd6a1jrnwvqmidw10ll645gvkp8l39li0107n"; depends=[igraph linkcomm MCL Rcpp]; };
+  ProFit = derive2 { name="ProFit"; version="1.2.3"; sha256="00363b2in0lnspn5krwyvzpllyg249pq1vpy1sf51js45yhzw14f"; depends=[celestial cubature FITSio LaplacesDemon magicaxis RColorBrewer]; };
+  ProFound = derive2 { name="ProFound"; version="1.1.0"; sha256="1rnzzvwdkcjmcij32s9lc0i6dgc8y8lmkyf7226wdqxpcr4cz0kz"; depends=[celestial data_table FITSio magicaxis RColorBrewer]; };
   ProTrackR = derive2 { name="ProTrackR"; version="0.3.5"; sha256="19ilj03w5jpc1hw5avyb780iy3rdbby3kliym0si2zv6gyi9k541"; depends=[audio lattice signal tuneR XML]; };
   ProbForecastGOP = derive2 { name="ProbForecastGOP"; version="1.3.2"; sha256="0fnw3g19lx4vs8vmn4qdirvybkiy2cxkhwkn9qa3phz45iixnvx4"; depends=[fields RandomFields]; };
   ProbYX = derive2 { name="ProbYX"; version="1.1-0"; sha256="0dphf6jr72l235v3yjhwi8bqmv6ac7yrbyfwhx4qjrrcdnsb7qhl"; depends=[rootSolve]; };
@@ -2688,9 +2809,9 @@ in with self; {
   ProgGUIinR = derive2 { name="ProgGUIinR"; version="0.0-4"; sha256="0srhk42ssx4i096sbs4jacqjsc1ffqjxjgvpplzshlqaby1h3795"; depends=[ggplot2 MASS svMisc]; };
   ProjectTemplate = derive2 { name="ProjectTemplate"; version="0.8.2"; sha256="1yxfx7vi1vvwlk5wzjlkv7q591hq6a5jdv4brzb6v670fmw21kvd"; depends=[]; };
   ProjectionBasedClustering = derive2 { name="ProjectionBasedClustering"; version="1.0.7"; sha256="1nammbm9hjsgb46cqvhwx45lfaaxw13d12q43fgwk411a91rblm1"; depends=[deldir GeneralizedUmatrix geometry ggplot2 Rcpp shiny shinyjs vegan]; };
-  ProliferativeIndex = derive2 { name="ProliferativeIndex"; version="1.0.0"; sha256="1baf4v9c2pqqmlgxs1jf7fhwqbsw0l1g7rdiia21acxix2j3b7wj"; depends=[]; };
+  ProliferativeIndex = derive2 { name="ProliferativeIndex"; version="1.0.1"; sha256="03ipsbs8pfwr8wsx7j2y9c67ic4qcady7xpa47l8dr14ff63cfk7"; depends=[]; };
   PropCIs = derive2 { name="PropCIs"; version="0.3-0"; sha256="1ywzi88igzaj2wnbrqa08cy7pw886z2m0x3j7rk45rin9mgpfdfd"; depends=[]; };
-  PropClust = derive2 { name="PropClust"; version="1.4-3"; sha256="0k1wn62vlrddzhknyjpizpqxzrgl38frncql3mrlwakkn0kh8l5z"; depends=[dynamicTreeCut flashClust]; };
+  PropClust = derive2 { name="PropClust"; version="1.4-6"; sha256="1p15n98b6qprphgbhdqgnsxy9d9kik19h6j9f2dy6x1hkinrzsfa"; depends=[dynamicTreeCut fastcluster]; };
   PropScrRand = derive2 { name="PropScrRand"; version="1.1"; sha256="0cj62dzg4zm8d1g8h7qmviiwm93cwplppbi0p674fmmf1wy84v9s"; depends=[]; };
   ProteinDescriptors = derive2 { name="ProteinDescriptors"; version="0.1.0"; sha256="1ydm8aym1wwxmfh4krh84nmj1wkgb574igg1sywl58l3qlnhya0l"; depends=[]; };
   Przewodnik = derive2 { name="Przewodnik"; version="0.16.12"; sha256="1aq80aqflfm1ypqa51h10mc3g0qdr651j6g1b7008k7h0ryq42gv"; depends=[PBImisc PogromcyDanych]; };
@@ -2703,9 +2824,9 @@ in with self; {
   Publish = derive2 { name="Publish"; version="2018.04.17"; sha256="0dbcql2mi2qsxzcgcqa58yqynfq1800fa06ikyay2dm6gdyf0apq"; depends=[data_table lava multcomp prodlim survival]; };
   PurBayes = derive2 { name="PurBayes"; version="1.3"; sha256="0nbm4cyrwfbwwbjbjkylr86cshaqbvbif6dkp4fag8kbcgyyx5qh"; depends=[rjags]; };
   PwrGSD = derive2 { name="PwrGSD"; version="2.3"; sha256="1iisib4bnb3fp0nwxnal13fgd0fs1vckchr4cj716k72jh6k7slm"; depends=[survival]; };
-  PxWebApiData = derive2 { name="PxWebApiData"; version="0.1.0"; sha256="0rd82kmpija4kkyl283b1z61q0abasimz4z7rki3kvfr0afa44j3"; depends=[httr jsonlite rjstat]; };
-  PythonInR = derive2 { name="PythonInR"; version="0.1-4"; sha256="0krr5k0y9rggzq8f74nc6pyf47g8va1lvva31vc774hbb0rmr7gf"; depends=[pack R6]; };
-  QCA = derive2 { name="QCA"; version="3.2"; sha256="1bjsc24b3g7xdb1fi3f4y1297g185gasl3xsgqxibck2zjlagl11"; depends=[fastdigest shiny venn]; };
+  PxWebApiData = derive2 { name="PxWebApiData"; version="0.2.0"; sha256="0mpasacnlrwb37n221j04fzms63b63nj9z8d4h21nhkhmclrsxgg"; depends=[httr jsonlite rjstat]; };
+  PythonInR = derive2 { name="PythonInR"; version="0.1-6"; sha256="0m5ppiklg4rqc3czkkb6xvkiw3bv3g6c9qcvs70i7l9gxh34xghv"; depends=[pack R6]; };
+  QCA = derive2 { name="QCA"; version="3.3"; sha256="1h5vjcm3rhrs2jxrfx2h81rvbzh35slhpkn0mf13hln5c1hh0s0g"; depends=[fastdigest shiny venn]; };
   QCAfalsePositive = derive2 { name="QCAfalsePositive"; version="1.1.1"; sha256="03qzb6vdnbri52gfx3laz14988p2swdv9m8i5z7gpsv3f3bjrxbp"; depends=[]; };
   QCApro = derive2 { name="QCApro"; version="1.1-2"; sha256="1glfb1x1h05cs07nq5glqvlil58wp3c0kaxi1l7k94y797i8r7hq"; depends=[lpSolve]; };
   QCAtools = derive2 { name="QCAtools"; version="0.2.3"; sha256="1q49l2mf02hqvz2ahqjdx7i3yxniy7dn2s74xjl9l6zdq8bypfw2"; depends=[directlabels ggplot2 QCA stringr]; };
@@ -2713,6 +2834,7 @@ in with self; {
   QCGWAS = derive2 { name="QCGWAS"; version="1.0-8"; sha256="1wn1kddgfmqv326pihnavbgsbd2yxrlq5s2xgi6kbprssxvj8bk1"; depends=[]; };
   QCSIS = derive2 { name="QCSIS"; version="0.1"; sha256="0ibh3060jxf426svdfxiryvfhr8pwk991xs653d50ip4f9290y3a"; depends=[]; };
   QCSimulator = derive2 { name="QCSimulator"; version="0.0.1"; sha256="1ff7xagnzibhrwrmkqyky4ik3kx7rrlajrs1ypm210sl1d73jwvs"; depends=[ggplot2]; };
+  QDComparison = derive2 { name="QDComparison"; version="1.0"; sha256="1gn9r4vylwg483diafc5qy6wx5xhrr8nrxliwc32m6b6psblkvwz"; depends=[]; };
   QFASA = derive2 { name="QFASA"; version="1.0.2"; sha256="1gfclbalcfcfmb8bq7rp8kpnaqblai9y7n7n7zh4a3qmia5vrz2b"; depends=[Rsolnp]; };
   QFRM = derive2 { name="QFRM"; version="1.0.1"; sha256="1k79sq9il4326q7ivwdwlzw7drjv4pwqra3fr8kyyqcpmxh9296h"; depends=[]; };
   QGglmm = derive2 { name="QGglmm"; version="0.7.1"; sha256="0hgs99vfan2nsz5i98an5z65lyw3a3ddhwzl0ffvlngw7gnshzqd"; depends=[cubature]; };
@@ -2726,7 +2848,7 @@ in with self; {
   QRank = derive2 { name="QRank"; version="1.0"; sha256="1f924r5bf5vjfl12hk1n5m3f94g30f6vmvzq2bn8295dflyndck0"; depends=[quantreg]; };
   QRegVCM = derive2 { name="QRegVCM"; version="1.2"; sha256="0fcydkf6r2qxd59ylr8vn76bkxks91v58gfzvq3rjd5mqf9vsaaq"; depends=[quantreg SparseM truncSP]; };
   QSARdata = derive2 { name="QSARdata"; version="1.3"; sha256="0dhldnh0jzzb4assycc0l14s45ymvha48w04jbnr34lrwgr9krh4"; depends=[]; };
-  QTL_gCIMapping = derive2 { name="QTL.gCIMapping"; version="3.0"; sha256="1yk4sl4hlapcjajwq85jwcmpli4myib9862sz7ary676giq1vp18"; depends=[data_table doParallel foreach MASS openxlsx parcor qtl Rcpp stringr]; };
+  QTL_gCIMapping = derive2 { name="QTL.gCIMapping"; version="3.1"; sha256="14zdq8a352jvgzq1wp0jj2wx3hs3cr5dpryyvlhv2c0syldlw7xl"; depends=[data_table doParallel foreach MASS openxlsx parcor qtl Rcpp stringr]; };
   QTL_gCIMapping_GUI = derive2 { name="QTL.gCIMapping.GUI"; version="1.0"; sha256="05v93p3s9kncyzhiqgmd79h6b61xrr2k9vpgv9hjj0pkhsyanqc1"; depends=[data_table doParallel foreach MASS openxlsx parcor qtl Rcpp shiny stringr]; };
   QTLRel = derive2 { name="QTLRel"; version="1.0"; sha256="0hlnh04w45imf0f7rm9pg1whlps5zxh00qvvn81hip16bv48cw79"; depends=[gdata lattice]; };
   QUIC = derive2 { name="QUIC"; version="1.1"; sha256="021bp9xbaih60qmss015ycblbv6d1dvb1z89y93zpqqnc2qhpv3c"; depends=[]; };
@@ -2734,8 +2856,9 @@ in with self; {
   QZ = derive2 { name="QZ"; version="0.1-6"; sha256="1vgqwv3rbnmz2sgbmbivgnxcwy5dzgk6ivqskdnqkil4f10zflmi"; depends=[Matrix]; };
   Qtools = derive2 { name="Qtools"; version="1.3"; sha256="1vbjydacgczjlsf8b8id25n3k0cq74i43nsvax22k8hbvj4g0b94"; depends=[boot MASS mice quantreg]; };
   QuACN = derive2 { name="QuACN"; version="1.8.0"; sha256="1597blp8gqc5djvbgpfzi8wamvy0x50wh5amxj9cy99qa0jlglxi"; depends=[combinat graph igraph RBGL]; };
+  QuClu = derive2 { name="QuClu"; version="0.1.0"; sha256="0a2malh9vz5jcjgdx4d98k0c61vz3ip8ynqh5i85x8hzcby11qgj"; depends=[]; };
   QualInt = derive2 { name="QualInt"; version="1.0.0"; sha256="1ms96m3nz54848gm9kdcydnk5kn2i8p1rgl2dwn7cqcqblfvsr4j"; depends=[ggplot2 survival]; };
-  Quandl = derive2 { name="Quandl"; version="2.8.0"; sha256="0n1c4343ki8nia7qrq2m9zb7b05qr3yjwvk1ji7m44sa613w6y5l"; depends=[httr jsonlite xts zoo]; };
+  Quandl = derive2 { name="Quandl"; version="2.9.1"; sha256="1pifih9p6bzr11vw3pgfjx4nfjp7ap3a49mvfgys994bkai5mhhr"; depends=[httr jsonlite xts zoo]; };
   QuantNorm = derive2 { name="QuantNorm"; version="1.0.3"; sha256="1kc8qfa5fwdmk4nfzlkd22968zn44ggr65ysm1l31bhbgjh59ly3"; depends=[]; };
   QuantPsyc = derive2 { name="QuantPsyc"; version="1.5"; sha256="1i9bh88r8zxndzjqsj14qw64gnvm5a9kvhjhzk3qsrvl3qzjgh93"; depends=[boot MASS]; };
   QuantTools = derive2 { name="QuantTools"; version="0.5.7"; sha256="069rvh4yfar5dh6aj6p0q61gasvs9wr72x9pnj00lvyjlnv06p5n"; depends=[data_table fasttime R6 Rcpp RCurl readxl]; };
@@ -2744,21 +2867,19 @@ in with self; {
   QuantumClone = derive2 { name="QuantumClone"; version="1.0.0.6"; sha256="1520jgkzp8g7gv7ggqhvlrdnpdyhygqjgsd1my5jq30afdqj6qmp"; depends=[DEoptim doParallel foreach fpc ggplot2 gridExtra NbClust optimx]; };
   QuasiSeq = derive2 { name="QuasiSeq"; version="1.0-10-2"; sha256="1mr43vys9l1n859lzlcakjrvjllybgrwl0p8mc28h7m87yjkj670"; depends=[edgeR mgcv pracma]; };
   R_cache = derive2 { name="R.cache"; version="0.13.0"; sha256="1hf5cb7xvnca5zlh9245b5g62sgsaxwdhiv7x59yld37cydakm6k"; depends=[digest R_methodsS3 R_oo R_utils]; };
-  R_devices = derive2 { name="R.devices"; version="2.15.1"; sha256="09gmzb87n1ybqwyp4jdpih3w3s7nqkr4hd1qhcqr57kp2pj9jp9x"; depends=[base64enc R_methodsS3 R_oo R_utils]; };
+  R_devices = derive2 { name="R.devices"; version="2.16.0"; sha256="1f4jsa7b425rm1a0d00njx0pgvrvnhzf0xz2asq4yjhm4rhz0pbz"; depends=[base64enc R_methodsS3 R_oo R_utils]; };
   R_filesets = derive2 { name="R.filesets"; version="2.12.1"; sha256="0grd3wk5xh7jgp10m78knj0snqyxqv7yir6wvz2wq5rabvcn9mab"; depends=[digest future_apply R_cache R_methodsS3 R_oo R_utils]; };
   R_huge = derive2 { name="R.huge"; version="0.9.0"; sha256="13p558qalv60pgr24nsm6mi92ryj65rsbqa6pgdwy0snjqx12bgi"; depends=[R_methodsS3 R_oo R_utils]; };
-  R_matlab = derive2 { name="R.matlab"; version="3.6.1"; sha256="013qi3iikikgib23cqg74vpp2ymsbw1zd6zny7m1km2js6gmfchh"; depends=[R_methodsS3 R_oo R_utils]; };
+  R_matlab = derive2 { name="R.matlab"; version="3.6.2"; sha256="1fw6ny8xb2j088k3s9lzd15av3j6xc2bvbccyrp7yjx2f3s3i8qv"; depends=[R_methodsS3 R_oo R_utils]; };
   R_methodsS3 = derive2 { name="R.methodsS3"; version="1.7.1"; sha256="11z6v2i7jl647wxi9p5z66yvfnnqv6s7fxqmz7w2gkb6j8wl1f24"; depends=[]; };
   R_oo = derive2 { name="R.oo"; version="1.22.0"; sha256="0k6xwy93fpb2p7bs76lzk52br9rv5xnd9524xj8qyazv1132x1n0"; depends=[R_methodsS3]; };
-  R_rsp = derive2 { name="R.rsp"; version="0.42.0"; sha256="1zcq0hzi0j7fvj2rs796a1i120wbr0387vck17rrd644awwbsbm0"; depends=[digest R_cache R_methodsS3 R_oo R_utils]; };
-  R_utils = derive2 { name="R.utils"; version="2.6.0"; sha256="03j7hrs03kyj9qrjxyp5kqv4lpqqpk6xwbkzx6j15d8928yrjr2x"; depends=[R_methodsS3 R_oo]; };
+  R_rsp = derive2 { name="R.rsp"; version="0.43.0"; sha256="0ax6781kfylx0acz0i3sqnpkxmrq73x29wwfic59ng7vj0ws0gyd"; depends=[digest R_cache R_methodsS3 R_oo R_utils]; };
+  R_utils = derive2 { name="R.utils"; version="2.7.0"; sha256="0cxhn14a57x4gcyrwpfz1d6dw4xh0jcpqkb33hx8imnr340blh7n"; depends=[R_methodsS3 R_oo]; };
   R0 = derive2 { name="R0"; version="1.2-6"; sha256="1yvcgchxlj7hkgqkw6g8pxnracxkld1grgykkcr6wbhminbylqv8"; depends=[MASS]; };
   R1magic = derive2 { name="R1magic"; version="0.3.2"; sha256="1xfldr5y7pfdi6qljjvckknsv2wi9rnzwmqxkpgnyc96md2fvwjr"; depends=[]; };
   R2BayesX = derive2 { name="R2BayesX"; version="1.1-1"; sha256="1ff8cscl839ykp7l34sscc8zqp516mh64igk7dfv9n02l40w8ypf"; depends=[BayesXsrc colorspace mgcv]; };
-  R2Cuba = derive2 { name="R2Cuba"; version="1.1-0"; sha256="1zmlsambajzxkc9dawlqb0png8s502hwblq0vyhqgc08yf29b43w"; depends=[]; };
   R2DGC = derive2 { name="R2DGC"; version="1.0.3"; sha256="0f84fmpf3m2s2p6bllvjs8rgnhwjy54adblv02dq8gakwvb4j2aw"; depends=[]; };
   R2DT = derive2 { name="R2DT"; version="0.1"; sha256="0zydrdx6xdlacq6s01jwv4rv6ydmbwmiif40rilp8h76bim0kdbr"; depends=[data_table devFunc plyr]; };
-  R2G2 = derive2 { name="R2G2"; version="1.0-2"; sha256="05d5vybvsi4pyr099916nk1l8sqszs9gaj2vhsx1jxxks8981na7"; depends=[]; };
   R2HTML = derive2 { name="R2HTML"; version="2.3.2"; sha256="00kxny7hajs9r2kw63qk7d03ggdxx2j1g8vbrmzp806y8aczvik9"; depends=[]; };
   R2MLwiN = derive2 { name="R2MLwiN"; version="0.8-5"; sha256="09p8xrxhcf6biy1mffv31p2hlr19s51f3n67az52f3xv5lyp9wm8"; depends=[coda digest doParallel foreach foreign lattice Matrix memisc rbugs texreg]; };
   R2OpenBUGS = derive2 { name="R2OpenBUGS"; version="3.2-3.2"; sha256="1cxr93g0fkdv3lqdh63l2gcp7qn3q42pm1r6nzf35550k9ahkhnv"; depends=[boot coda]; };
@@ -2771,7 +2892,7 @@ in with self; {
   R3port = derive2 { name="R3port"; version="0.1.1"; sha256="0ww0sqjx0la03qx353h0y5wr5qpc5fir3gjy4fsxkw6jrsyx9vaz"; depends=[plyr reshape2 whisker]; };
   R4CouchDB = derive2 { name="R4CouchDB"; version="0.7.5"; sha256="1wd1yqbs8m4zqvdm6x7mrcyk5b5pr4azm3r49nrilg8fnr2bk9rz"; depends=[bitops RCurl RJSONIO]; };
   R4dfp = derive2 { name="R4dfp"; version="0.2-4"; sha256="02crzjphlq4hi2crh9lh8l0acmc1rgb3wr1x8sn56cwhq4xzqzcb"; depends=[]; };
-  R6 = derive2 { name="R6"; version="2.2.2"; sha256="13xfdr19ca7ymisidsanm6w7hsk3qmy5l8c0mlz3nk48f7s5cxq8"; depends=[]; };
+  R6 = derive2 { name="R6"; version="2.3.0"; sha256="1jgshp0x8a65rwyvk31slnfp7l153dk5826y2rxcd5lpclby3d85"; depends=[]; };
   RAC = derive2 { name="RAC"; version="1.5"; sha256="0q0kk9j3blrnhv0rfmryc35lli5j4kds2vmjdpg77znagb45609k"; depends=[maps maptools matrixStats ncdf4 plotrix raster rgdal rgeos rstudioapi sp]; };
   RAD = derive2 { name="RAD"; version="0.3"; sha256="0nmgsaykxavq2bskq5x0jvsxzsf4w2gqc0z80a59376li4vs9lpj"; depends=[MASS mvtnorm]; };
   RADanalysis = derive2 { name="RADanalysis"; version="0.5.5"; sha256="1py07p24i1pky8wwyy8ajmkg6h2n7nbpxp1w6lrkiyl0p2kgjm20"; depends=[scales sfsmisc]; };
@@ -2780,20 +2901,21 @@ in with self; {
   RAMP = derive2 { name="RAMP"; version="2.0.1"; sha256="1n8h58j6v1xs6adrr4w4ha7pn1q2fh14dyg7zgpp2smv0j2b33dr"; depends=[]; };
   RAMpath = derive2 { name="RAMpath"; version="0.4"; sha256="0blixfmgiq22hd356hrp4vbhfkkgh0a58143nhirjx3sav9pxc1v"; depends=[ellipse lavaan MASS]; };
   RANKS = derive2 { name="RANKS"; version="1.0"; sha256="1lvaya9jlqrr9klqznw4fz5h5x0sw191ci74hpymb4gzhhxcbp27"; depends=[graph limma NetPreProc PerfMeas RBGL]; };
-  RANN = derive2 { name="RANN"; version="2.5.1"; sha256="0il5i99vbcagnxvb15af5n37g04a4q1x96bz73zh3jhki9fpw9vm"; depends=[]; };
-  RANN_L1 = derive2 { name="RANN.L1"; version="2.5"; sha256="0sjf92hdw9jczvq1wl5syckhvik7wv0k9vrrgw4nnnsabc25v9pf"; depends=[]; };
+  RANN = derive2 { name="RANN"; version="2.6"; sha256="1r6rivh9ba4gwnzryip0aiwsbm46zma7nvd9z5y456p2dgzp9lii"; depends=[]; };
+  RANN_L1 = derive2 { name="RANN.L1"; version="2.5.1"; sha256="0npkbphdk5m8lpga874yv8vld38ikn2rk8r5ysg0n4vcd1jxr1ac"; depends=[]; };
   RAP = derive2 { name="RAP"; version="1.1"; sha256="18dclijs72p6gxawpg8hk7n512ah4by5jfg2jnrp8mz79ajmdgir"; depends=[]; };
   RAPIDR = derive2 { name="RAPIDR"; version="0.1.1"; sha256="14cnw4jjs5anb55zlg1yj6qc9yr51rsamigq2q7h8ypj2ggnna1d"; depends=[Biostrings data_table GenomicAlignments GenomicRanges PropCIs Rsamtools]; };
   RAPTOR = derive2 { name="RAPTOR"; version="1.0.0"; sha256="1i3p3qa56ghcwh69vv3gnxnw13cbd99ms654j2bqr7g9qb7nl8vj"; depends=[mgcv]; };
   RATest = derive2 { name="RATest"; version="0.1.2"; sha256="0cxb82kzmywgslf6hfjl6v015s64jh483bzxnhph420mcp3ysbfk"; depends=[ggplot2 gridExtra quantreg]; };
   RAdwords = derive2 { name="RAdwords"; version="0.1.17"; sha256="1w6fkg7a5dp6s80fzcgs65f0d7qp43l4yawh00ly0b750f2fnxvp"; depends=[RCurl rjson]; };
-  RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.3"; sha256="0g5sdq6sl7cvsj9fgqhcdxjkrfi53078r0mbzvf69cvz38y5x3sm"; depends=[]; };
+  RApiDatetime = derive2 { name="RApiDatetime"; version="0.0.4"; sha256="0z08xwdn3vzwmprx5yh2xip5bqk13zrd47lwnsa2yin2phz6yry1"; depends=[]; };
   RApiSerialize = derive2 { name="RApiSerialize"; version="0.1.0"; sha256="0gm2j8kh40imhncwwx1sx9kmraaxcxycvgwls53lcyy2ap344k9j"; depends=[]; };
   RAppArmor = derive2 { name="RAppArmor"; version="2.0.2"; sha256="18zmqqh4rnbnaiwi60jfp4xi8fp63ydr3jk9w4ijmy6s4hkpp75g"; depends=[]; };
   RArcInfo = derive2 { name="RArcInfo"; version="0.4-12"; sha256="1j1c27g2gmnxwslff4l0zivi48qxvpshmi7s9wd21cf5id0y4za4"; depends=[RColorBrewer]; };
   RBMRB = derive2 { name="RBMRB"; version="2.1.2"; sha256="1m6n2kfg83mlfy22k75hy5zjf547v0rdwk9w6l04yfyrr6himbr8"; depends=[data_table ggplot2 httr plotly rjson]; };
   RBPcurve = derive2 { name="RBPcurve"; version="1.2"; sha256="0zkfvnhm780vid4qqdrx9mnc6jxxrmrnq47pqvk35rm3m4l96782"; depends=[BBmisc checkmate mlr shape TeachingDemos]; };
-  RBesT = derive2 { name="RBesT"; version="1.3-3"; sha256="0pink9jza2pfm1vqmzgp0pcyg9a4ak4c9igcxj692np82mv8hi0j"; depends=[assertthat bayesplot BH checkmate dplyr Formula ggplot2 lme4 mvtnorm Rcpp RcppEigen rstan StanHeaders]; };
+  RBesT = derive2 { name="RBesT"; version="1.3-4"; sha256="1p74vn1651vyc9ydrp80fimj13p5bwmc56paxbh91liqsw0sd4b2"; depends=[assertthat bayesplot BH checkmate dplyr Formula ggplot2 mvtnorm Rcpp RcppEigen rstan StanHeaders]; };
+  RBitmoji = derive2 { name="RBitmoji"; version="0.0.2"; sha256="1v9qj3vmqsvnccsy735nbflmd81183h2flm0f1ckd4kl08r2fr3f"; depends=[getPass httr jsonlite png RCurl]; };
   RCA = derive2 { name="RCA"; version="2.0"; sha256="0pidb5czrf0dc3ywy6cwm5akgsc62pvf94kfyxibzmd1favykx1h"; depends=[gplots igraph]; };
   RCEIM = derive2 { name="RCEIM"; version="0.3"; sha256="1kil5r88b6lf8vxmswz0wn0hhjxjm8jmlcl5kxjwl6fwjyy2z120"; depends=[]; };
   RCMIP5 = derive2 { name="RCMIP5"; version="1.2.0"; sha256="0bwp1ln0y48g2d0bj9b47y0rlwffzv0pi6gjfzv4sg5anhswc9x7"; depends=[abind assertthat digest dplyr Matrix]; };
@@ -2810,8 +2932,8 @@ in with self; {
   RConics = derive2 { name="RConics"; version="1.0"; sha256="1lwr7hi1102gm8fi9k5ra24s0rjmnkccihhqn3byckqx6y8kq7ds"; depends=[]; };
   RCriteo = derive2 { name="RCriteo"; version="1.0.2"; sha256="1vyhnblw9zr5h6c25lf76p9vn95k8vr0hpq1sjkccdwl9yvsyhfy"; depends=[httr plyr RCurl XML]; };
   RCrypto = derive2 { name="RCrypto"; version="0.1.0"; sha256="1lw7hq5ks36fixk0g3gcy4nw21ygwc14jq840hnhyds4glywfpvm"; depends=[dplyr httr jsonlite]; };
-  RCurl = derive2 { name="RCurl"; version="1.95-4.10"; sha256="02pyh6kvsfbwgccf8v77aa3ky21kps1rpgaii20wmridrgqj90vg"; depends=[bitops]; };
-  RCzechia = derive2 { name="RCzechia"; version="1.2.6"; sha256="03zp8y76084l2zjzf9bbfhig7gi01a21gnjfiajzi8q851nfgl29"; depends=[httr lwgeom magrittr sf]; };
+  RCurl = derive2 { name="RCurl"; version="1.95-4.11"; sha256="1gwpikvd5r0fjxp4cbn3mz80d52xmlfgx07dk06lc35qylf0jakr"; depends=[bitops]; };
+  RCzechia = derive2 { name="RCzechia"; version="1.3.0"; sha256="0c002x07qgnn3vfrvyr12a2vk3dbrabi2qq9a3acnff7isk3hq1m"; depends=[httr lwgeom magrittr sf]; };
   RDIDQ = derive2 { name="RDIDQ"; version="1.0"; sha256="09gincmxv20srh4h82ld1ifwncaibic9b30i56zhy0w35353pxm2"; depends=[]; };
   RDML = derive2 { name="RDML"; version="0.9-9"; sha256="0amlr7mxp7175a7rd3jw7lhyvp3lnr01y81l27sl148sfb85zar6"; depends=[checkmate data_table lubridate pipeR R6 readxl rlist stringr xml2]; };
   RDS = derive2 { name="RDS"; version="0.8-1"; sha256="18xn0ci35xs2myzj8rny6pp08cn8ljl3l4fdgaqp05fphgb5fh8j"; depends=[anytime ergm ggplot2 gridExtra Hmisc igraph isotone network reshape2 scales]; };
@@ -2821,13 +2943,14 @@ in with self; {
   RDieHarder = derive2 { name="RDieHarder"; version="0.1.4"; sha256="0p37r45fy75a0is2mycvhrz705707acdb2858yd9qx70n6sg3jph"; depends=[]; };
   RDocumentation = derive2 { name="RDocumentation"; version="0.8.2"; sha256="0qdn3c5xbjyrhk56wfch50xpyyfd4f79hs0v00cqk9iwsnjlwmb5"; depends=[httr proto rjson]; };
   RDota2 = derive2 { name="RDota2"; version="0.1.6"; sha256="0fjsgg4dmzw2xwrf8jxq0f2d7f78bf67bl3ms5qcjk9kskfnymag"; depends=[httr jsonlite]; };
-  REAT = derive2 { name="REAT"; version="2.0.0"; sha256="0al0502h1iyd03c4hsy35nxz3nbvvfshi5jxxvxlh1x4bxvpy1vs"; depends=[]; };
+  REAT = derive2 { name="REAT"; version="2.1.0"; sha256="16yrpdvy33arjcdn6zq674vhkm4m819a6i6ls1scwd8ag9fv3zxj"; depends=[]; };
   REBayes = derive2 { name="REBayes"; version="1.3"; sha256="0byd7587vddffplzp8kc2aakab61pck2r25rajxfn0rsvl5yvxyx"; depends=[Matrix reliaR Rmosek]; };
   RECA = derive2 { name="RECA"; version="1.6"; sha256="0bb6phd7f8rrz7754bn6sp53jrvcl6xg6lkj330945xwia1dhpxi"; depends=[]; };
   REDCapR = derive2 { name="REDCapR"; version="0.9.8"; sha256="14psw0sxlyig4nf968n997djwf80hgy5ia2g0bp8rdpn8lrj01g6"; depends=[data_table dplyr httr magrittr readr tibble tidyr]; };
   REEMtree = derive2 { name="REEMtree"; version="0.90.3"; sha256="01sp36p12ky8vgsz6aik80w4abs70idr9sn4627lf94r92wwwsbc"; depends=[nlme rpart]; };
   REGENT = derive2 { name="REGENT"; version="1.0.6"; sha256="1f2sjqkhw3rbmwbcmx7l7imj696kblisi8y3fz77xygbcbxa6rmq"; depends=[]; };
-  REIDS = derive2 { name="REIDS"; version="0.0.2"; sha256="1njyvc818rwwg109ry8nb2p05rf9yh6zsydvww2ribynlsr2rir1"; depends=[aroma_affymetrix aroma_core biomaRt data_table GenomeGraphs lmtest MCMCpack RColorBrewer]; };
+  REIDS = derive2 { name="REIDS"; version="0.1.0"; sha256="10mznsba9bmv9754zg6pzrwlrgkcki7zfr995nrlsg5fjphqyqg9"; depends=[aroma_affymetrix aroma_core biomaRt data_table GenomeGraphs lmtest MCMCpack RColorBrewer]; };
+  REPLesentR = derive2 { name="REPLesentR"; version="0.2.0"; sha256="0j3zlbmx5mfnp3cr9cf02f2yl8g2lji4smpzjhffx0hac2ina9y8"; depends=[dat knitr modules]; };
   REPPlab = derive2 { name="REPPlab"; version="0.9.4"; sha256="1pf8zrjdzziyq2lw31p1ij7cn4j7pf659ygxv8wpfnmcmpaqbc45"; depends=[lattice LDRTools rJava]; };
   REPTILE = derive2 { name="REPTILE"; version="1.0"; sha256="11swy4jrmmb0xjjxm1wyxd628fxxcqnialvijdrjwjpdbvraz4gq"; depends=[doParallel flux foreach optparse randomForest]; };
   REQS = derive2 { name="REQS"; version="0.8-12"; sha256="049glqhc8h8gf425kmj92jv70917dsigpm37diby0c6hb4jrg8ka"; depends=[gtools]; };
@@ -2852,10 +2975,12 @@ in with self; {
   RGCCA = derive2 { name="RGCCA"; version="2.1.2"; sha256="0zcxakqnmih0243y5b6r9nmcfanzxd6q344pd5bca5pnm3y43wr0"; depends=[Deriv MASS]; };
   RGENERATE = derive2 { name="RGENERATE"; version="1.3.5"; sha256="12dq04xpl06zhkzwqx3zy0bkpvb5phbdj2inxsyczf6d4dk209mb"; depends=[RMAWGEN]; };
   RGENERATEPREC = derive2 { name="RGENERATEPREC"; version="1.2"; sha256="1w28yfzk3ilbz1r9fsc76cigyrnzzhsfm3a81ff8g26za7cb8vjp"; depends=[blockmatrix copula Matrix RGENERATE RMAWGEN stringr]; };
-  RGF = derive2 { name="RGF"; version="1.0.3"; sha256="00s360kba9w58bzyhikh487gymryq0g62zhyr3zd2vfm4x0rl0ms"; depends=[Matrix R6 reticulate]; };
+  RGF = derive2 { name="RGF"; version="1.0.5"; sha256="0dd3ziaprarvg2bmm1vci5fpqp2xfa6rk60zx2cagkqgnly152zn"; depends=[Matrix R6 reticulate]; };
   RGIFT = derive2 { name="RGIFT"; version="0.1-5"; sha256="1745fs4bq0ss39fiwljspvrmnkgbbpc1fjvhvcrsmp2iizq12sgn"; depends=[]; };
+  RGeckoboard = derive2 { name="RGeckoboard"; version="0.1-5"; sha256="0h7x3kdmlba9siwcnf313ajmz2jsmyhl7pndzs7qaqina3hkl46r"; depends=[httr jsonlite]; };
   RGenetics = derive2 { name="RGenetics"; version="0.1"; sha256="0x5sspd67hh08qm62whlnnd838m0np29q3bfzgwp6j85lhil3jrx"; depends=[]; };
   RGeode = derive2 { name="RGeode"; version="0.1.0"; sha256="1g8ha6zg4pvi8qimiihsa6rjfdcyj0q526l44jajjbqczmwg59lv"; depends=[MASS Rcpp]; };
+  RGoogleAnalytics = derive2 { name="RGoogleAnalytics"; version="0.1.6"; sha256="05wbcdksx5g6y7x4r1pvc9is3afxbpdxdbmc6b4jhn46rg4228z4"; depends=[digest httr lubridate]; };
   RGoogleAnalyticsPremium = derive2 { name="RGoogleAnalyticsPremium"; version="0.1.1"; sha256="0d22pdd5kvnrspikfb66ny07pgx96rvykr0zi78rwn6g1symdb4q"; depends=[httr jsonlite lubridate]; };
   RGoogleFit = derive2 { name="RGoogleFit"; version="0.3.1"; sha256="0g4r5vb9zv6mqym1mh028ic9hkmlpklrhq4ks5sys7y60ps893k1"; depends=[bit64 httr jsonlite RCurl]; };
   RGraphics = derive2 { name="RGraphics"; version="2.0-14"; sha256="0bv95g17pvpq3nji0akphdaznh9k85hf5z78qypxwfqr76brxd05"; depends=[ggplot2 lattice]; };
@@ -2878,18 +3003,19 @@ in with self; {
   RInside = derive2 { name="RInside"; version="0.2.14"; sha256="1ks9hs78s2vgdp9nfpzwifkqnh3vnaqwand51yh9r1zyjc4k9rcd"; depends=[Rcpp]; };
   RItools = derive2 { name="RItools"; version="0.1-16"; sha256="0rs5gzlpsn8ci4s2pqaarzwd6y41vv6l4188p93x0vl2jcpd77vl"; depends=[abind SparseM survival svd xtable]; };
   RJDBC = derive2 { name="RJDBC"; version="0.2-7.1"; sha256="1d36js3kwlghsjxfhv7rl8nvg210hxwrx8sdxrxb0inwlqsash25"; depends=[DBI rJava]; };
-  RJSDMX = derive2 { name="RJSDMX"; version="1.9-3.1"; sha256="0iz4p9kl9i61sd23cqfwgwmqb48nz882mvir7p7sg5ysm0b65ijd"; depends=[rJava zoo]; };
+  RJSDMX = derive2 { name="RJSDMX"; version="2.1-0"; sha256="1z1fhm6as9m35v11n5npv3mlaaal7w5c04g4yl2p26ljsmssfbsh"; depends=[rJava zoo]; };
   RJSONIO = derive2 { name="RJSONIO"; version="1.3-0"; sha256="1dwgyiy19sixhy6yclqcaaxswbmpq7digyjjxhy1qv0wfsvk94qi"; depends=[]; };
   RJSplot = derive2 { name="RJSplot"; version="2.5"; sha256="0p2zqbq29pfjl703wqqjzgmif7yfzz7l8rzarjf5axkdy7w7fcyl"; depends=[]; };
   RJaCGH = derive2 { name="RJaCGH"; version="2.0.4"; sha256="1a8nd0w73dvxpamzi2addwr6q3rxhnnpa1girnlwbd1j1dll0bz6"; depends=[]; };
   RJafroc = derive2 { name="RJafroc"; version="1.0.2"; sha256="099q1ajngj147szdnnyx2yi8samc7vbjbvygafgwr20dbvp07wzg"; depends=[bbmle binom caTools ggplot2 mvtnorm numDeriv Rcpp stringr xlsx]; };
   RKEA = derive2 { name="RKEA"; version="0.0-6"; sha256="1dncplg83b4zznh1zh90wr8jv5259cy93imrry86c5kqdijmhrrp"; depends=[rJava RKEAjars tm]; };
   RKEAjars = derive2 { name="RKEAjars"; version="5.0-3"; sha256="0sm7dkdprmqh319jc43ra7qbk4qq0b2kdj9zs9mjcjz58gcrkl7s"; depends=[rJava]; };
+  RKEEL = derive2 { name="RKEEL"; version="1.2.3"; sha256="0w4ahialryzazla0xdfy6ci9v60sn57rmafhcpjp6vdjsy2r27r2"; depends=[arules doParallel foreach gdata Matrix pmml R6 rJava RKEELdata RKEELjars XML]; };
   RKEELdata = derive2 { name="RKEELdata"; version="1.0.5"; sha256="1swzqw6j006ya48ahg6n1g8faxhqiv9v5q1zrnihpzj6868lf7y3"; depends=[]; };
   RKEELjars = derive2 { name="RKEELjars"; version="1.0.18"; sha256="0gnjpqkm0bl6wpy9fhma6gfm6ngw786jv01kkbxz072hp1swrgmx"; depends=[downloader]; };
   RKlout = derive2 { name="RKlout"; version="1.0"; sha256="17mx099393b1m9dl3l5xjcpzmb9n3cpjghb90m9nidccxkhacmqf"; depends=[RCurl]; };
   RLRsim = derive2 { name="RLRsim"; version="3.1-3"; sha256="1r0xqay3jfg435dh9fqc6yy73wjffp658da194rx63vpfhshgz8w"; depends=[lme4 mgcv nlme Rcpp]; };
-  RLT = derive2 { name="RLT"; version="3.2.1"; sha256="14im1lvsfpl1vlhc3fmmi4vq41br48mlgqqnwnj0qqxawzzs5738"; depends=[]; };
+  RLT = derive2 { name="RLT"; version="3.2.2"; sha256="1a8cip975z99g8ljng4y86wv1gf1xwg0sqnxz79wj6zxpw8fk37c"; depends=[]; };
   RLeafAngle = derive2 { name="RLeafAngle"; version="1.0"; sha256="1anks22hn6qpac556p99kilkhc80h572dvcyz3wj1nqffdrhgrh3"; depends=[]; };
   RLogicalOps = derive2 { name="RLogicalOps"; version="0.1"; sha256="1qyn80x3x3bb5wgzyzw6pxs8a6q26yq1fkmkz7f5wywsnrj8hzfj"; depends=[rstackdeque stringr]; };
   RLumModel = derive2 { name="RLumModel"; version="0.2.3"; sha256="059nqbvy13jjgzhp4n9afqkc3dbv06aml5v5ffkhpx8kcmv48xp1"; depends=[deSolve Luminescence Rcpp RcppArmadillo]; };
@@ -2898,20 +3024,18 @@ in with self; {
   RM2 = derive2 { name="RM2"; version="0.0"; sha256="1v57nhwg8jrpv4zi22fhrphw0p0haynq13pg9k992sb0c72dx70a"; depends=[msm]; };
   RM2006 = derive2 { name="RM2006"; version="0.1.0"; sha256="1qjvdh89jql1fl6ia76g766y1igkshlv0slqmpi0y3bn40413snb"; depends=[]; };
   RMAWGEN = derive2 { name="RMAWGEN"; version="1.3.3"; sha256="0spc0vszbxfpfp3kqdj0gnb90nvn50qwalq3mw8151b8h1swmf3l"; depends=[chron date vars]; };
-  RMC = derive2 { name="RMC"; version="0.2"; sha256="1sc4nsjmaw2ajm8bka7r4mf73zxqhnvx23kl4v20pfpy9rhgd0h6"; depends=[]; };
-  RMCriteria = derive2 { name="RMCriteria"; version="0.1.0"; sha256="19i7idpkl7ipqcib6rlmbi77n1il9v2hy6s9yyia6m9sz1smxakl"; depends=[dplyr ggnetwork ggplot2 gridExtra linprog lpSolve network pastecs Rcpp RcppEigen RcppNumerical]; };
+  RMCriteria = derive2 { name="RMCriteria"; version="0.1.1"; sha256="195kamlc9qfpnv5vbimqn3m0qzac8ixy2b26xm533m51rv5k9njd"; depends=[dplyr ggnetwork ggplot2 gridExtra linprog lpSolve network pastecs Rcpp RcppEigen RcppNumerical]; };
   RMKdiscrete = derive2 { name="RMKdiscrete"; version="0.1"; sha256="0b4adw46sn98qmy4nxv5l5svcjrp5532x7slfhhgsskqx408lzjf"; depends=[]; };
-  RMOA = derive2 { name="RMOA"; version="1.0"; sha256="01mrl6544wv2jc8b8gk1whs865sbv4id5sywnf1hq3r7g8wgs8lp"; depends=[rJava RMOAjars]; };
-  RMOAjars = derive2 { name="RMOAjars"; version="1.0"; sha256="0k3w37dwyyvfxh7a9l76cyjm27qq1clxppc5h16li2m8x68fvpjq"; depends=[rJava]; };
+  RMOA = derive2 { name="RMOA"; version="1.0.1"; sha256="1ppbwqdfxzk1ayms0rqw22l0r8vkk8av39spwpq8avgl6vssw8c4"; depends=[rJava RMOAjars]; };
+  RMOAjars = derive2 { name="RMOAjars"; version="1.0.1"; sha256="0qzpwsbndn8fw9560z9h9w9ff9bx6xj7mr50683q1n3dpn5z637i"; depends=[rJava]; };
   RMRAINGEN = derive2 { name="RMRAINGEN"; version="1.0"; sha256="175kd803a44yblq2jw5mrn2qv4piiy249577lf684bmmajf4ird4"; depends=[blockmatrix copula Matrix RGENERATE RMAWGEN]; };
   RMThreshold = derive2 { name="RMThreshold"; version="1.1"; sha256="0wkc42vcggib002ad6ch43h6avpdgl12szrrrfd2p0wl72cwn5n1"; depends=[Matrix png]; };
   RMTstat = derive2 { name="RMTstat"; version="0.3"; sha256="1nn25q4kmh9kj975sxkrpa97vh5irqrlqhwsfinbck6h6ia4rsw1"; depends=[]; };
   RMallow = derive2 { name="RMallow"; version="1.0"; sha256="0prd5fc98mlxnwjhscmghw62jhq9rj5jk8qf4fnaa2a718yxf9b5"; depends=[combinat]; };
   RMariaDB = derive2 { name="RMariaDB"; version="1.0.6"; sha256="19pjxgz9h3bb89ra6ha6mbnzyz1sagmm82qd57y0rbrsvwn0pk2i"; depends=[BH bit64 DBI hms plogr Rcpp]; };
-  RMark = derive2 { name="RMark"; version="2.2.4"; sha256="1vns8bl3fnk6hkwmm0wl2c6lgyv3vabsk07kkxrxrl1nzy11wj3a"; depends=[coda matrixcalc msm]; };
+  RMark = derive2 { name="RMark"; version="2.2.5"; sha256="16nbm8fl8zdllgkx2hcjziakfrdwahxzn6d5mwigd4wcyvygkzzv"; depends=[coda matrixcalc msm]; };
   RMediation = derive2 { name="RMediation"; version="1.1.4"; sha256="19idqx0hwljbcfrpqwa81k7cxbd8kv77ji8yi4n4p7517jbkzma6"; depends=[e1071 lavaan MASS]; };
-  RMixpanel = derive2 { name="RMixpanel"; version="0.6-3"; sha256="025fg36jwq44y5m7msmjql3m0avc0hl0iw49wap0fvmzy5qn24qq"; depends=[base64enc jsonlite RCurl uuid]; };
-  RMongo = derive2 { name="RMongo"; version="0.0.25"; sha256="1anybw64bcipwsjc880ywzj0mxkgcj6q0aszdad6zd4zlbm444pc"; depends=[rJava]; };
+  RMixpanel = derive2 { name="RMixpanel"; version="0.7-1"; sha256="1xwmmfvky49n1l0w3kwcyaf2h4rhzz4k5icjwvpc90fqk8sxib6a"; depends=[base64enc jsonlite RCurl uuid]; };
   RMySQL = derive2 { name="RMySQL"; version="0.10.15"; sha256="0bmc7w5fnkjaf333sgc0hskiy332m9gmfaxg0yzkjxscpizdw43n"; depends=[DBI]; };
   RNAseqNet = derive2 { name="RNAseqNet"; version="0.1.2"; sha256="07wk0i8iz3cvkiqawxhm61g3nka8adw0zrrv60zx329gg49w0ycl"; depends=[ggplot2 glmnet hot_deck igraph PoiClaClu]; };
   RNAsmc = derive2 { name="RNAsmc"; version="0.3.0"; sha256="15k88skwqcd0m4m502fipdl1iind4mzizqdz4h63izpqfxijl3iz"; depends=[RRNA]; };
@@ -2921,15 +3045,15 @@ in with self; {
   RND = derive2 { name="RND"; version="1.2"; sha256="1rl5apgw43c841z0lapi9z2jn979dvqh4x1qkqx1ad77zcq87c85"; depends=[]; };
   RNGforGPD = derive2 { name="RNGforGPD"; version="1.0"; sha256="11n7fl1rrgnknn61qw6dh74amhakkjk5wyg0rms554lw9cn86x2v"; depends=[corpcor Matrix mvtnorm VGAM]; };
   RNHANES = derive2 { name="RNHANES"; version="1.1.0"; sha256="045ykpgxvc22blbp47ysbk6a6x4akjd39pjr114cr23s7f48g6h4"; depends=[dplyr foreign rvest survey xml2]; };
-  RNOmni = derive2 { name="RNOmni"; version="0.4.0"; sha256="1dk7ydbdhz92ixgm7carsalsdah4s3mshlkri3b69r9maxakkkjr"; depends=[abind foreach mvtnorm plyr Rcpp RcppEigen]; };
+  RNOmni = derive2 { name="RNOmni"; version="0.5.0"; sha256="1vfyri5mpc67295kmqg1vxc1brg6piyljgv3k62f6k0ynvddyd9x"; depends=[abind foreach plyr Rcpp RcppEigen]; };
   RNRCS = derive2 { name="RNRCS"; version="0.2.5"; sha256="19q78l8mh4701vqvr36vqc87n39s5ivzhiy5lvnxbd4dgibk1jr2"; depends=[ggplot2 magrittr rvest xml2]; };
   RNaviCell = derive2 { name="RNaviCell"; version="0.2"; sha256="15k8hkagn5520fy7x672fy329s2v7l0x44s44f6v7ql9mmg4b635"; depends=[RCurl RJSONIO]; };
-  RNeXML = derive2 { name="RNeXML"; version="2.1.1"; sha256="1hnw7m5sasbs7si3aivrg984fpjpya093zzk0jjigba2gq375x4p"; depends=[ape dplyr httr lazyeval plyr reshape2 stringr tidyr uuid XML xml2]; };
+  RNeXML = derive2 { name="RNeXML"; version="2.1.2"; sha256="0ax5mm8fa4rh1lqnhr9jspwnb6a098yja7ycssjj1lac0z7cs3c6"; depends=[ape dplyr httr lazyeval plyr reshape2 stringr tidyr uuid XML xml2]; };
   RNentropy = derive2 { name="RNentropy"; version="1.2.2"; sha256="0chvmrvpyyghilwb63y6pd1zp94i5qhpv5w19x9nw0ypk86pp2dj"; depends=[]; };
   RNetCDF = derive2 { name="RNetCDF"; version="1.9-1"; sha256="0idfskxb1k8x0zzl6b0kgskdxn7zr49gw9xcj870ah9zp93iwnkx"; depends=[]; };
   RNetLogo = derive2 { name="RNetLogo"; version="1.0-4"; sha256="1z7jp454k197c0zbkn64zmf25wadkiznv3w2csgiz917cbx6xcn1"; depends=[igraph rJava]; };
   RNewsflow = derive2 { name="RNewsflow"; version="1.0.1"; sha256="1vxzcsiapnq8101iq4w73m9k8cq2khgcsxak71x72n295r7qpsd6"; depends=[data_table igraph Matrix plyr scales slam tm wordcloud]; };
-  RNifti = derive2 { name="RNifti"; version="0.8.1"; sha256="1m1hw6mq47afa7kk36xkk3sb0yv28qwz503a7wq5c4djyp262mgh"; depends=[Rcpp]; };
+  RNifti = derive2 { name="RNifti"; version="0.10.0"; sha256="07sfzps4yg5zdhbxh6i4rbjvbjvvf2d8i9jcf64ywbmi557sw1zv"; depends=[Rcpp]; };
   RNiftyReg = derive2 { name="RNiftyReg"; version="2.6.1"; sha256="07ibpdh2z01jh9nmhs7lcz630fdq6lwal6w58np3axgcd91ch1mj"; depends=[ore Rcpp RcppEigen RNifti]; };
   ROAuth = derive2 { name="ROAuth"; version="0.9.6"; sha256="0vhsp8qybrl94898m2znqs7hmlnlbsh8sm0q093dwdb2lzrqww4m"; depends=[digest RCurl]; };
   ROC632 = derive2 { name="ROC632"; version="0.6"; sha256="0vgv4rclvb79mfj1phs2hmxhwchpc5rj43hvsj6bp7wv8cahfg5g"; depends=[penalized survival survivalROC]; };
@@ -2955,25 +3079,26 @@ in with self; {
   ROI_plugin_lpsolve = derive2 { name="ROI.plugin.lpsolve"; version="0.3-1"; sha256="0i1skxk88s8cgxbr2hl5z8h88aqchrfs3206dfb92libw3yi1vas"; depends=[lpSolveAPI ROI]; };
   ROI_plugin_msbinlp = derive2 { name="ROI.plugin.msbinlp"; version="0.3-0"; sha256="00zvjqq2sj7iaymc0lrf5lmqfbqilwh8llmq841lvsmbps45w41k"; depends=[ROI slam]; };
   ROI_plugin_neos = derive2 { name="ROI.plugin.neos"; version="0.3-0"; sha256="0hs64qbna8ggmn83g903kbxiyv5ghh2454xca0caf14x9lszv02j"; depends=[ROI xml2 xmlrpc2]; };
-  ROI_plugin_nloptr = derive2 { name="ROI.plugin.nloptr"; version="0.3-0"; sha256="0niq0q08033vcm59wflilii7lciqixcpf13a93hgdaypdca8lxcw"; depends=[nloptr ROI]; };
+  ROI_plugin_nloptr = derive2 { name="ROI.plugin.nloptr"; version="0.3-1"; sha256="1cy6q0cchd4rqmd2gxmg83q7cg93w6nnafjqsjxlj13773jr46f0"; depends=[nloptr ROI]; };
   ROI_plugin_optimx = derive2 { name="ROI.plugin.optimx"; version="0.3-0"; sha256="0hwjgwmaclq6y5mfmykjrchpyb632qzwcvvs1nnanmrh3yhfmpg9"; depends=[optimx ROI]; };
   ROI_plugin_qpoases = derive2 { name="ROI.plugin.qpoases"; version="0.3-1"; sha256="0ph6l85hrsc40wl443kkxywb2i0cjyh38g20000rnzhygl8kd7db"; depends=[Matrix Rcpp ROI slam]; };
   ROI_plugin_quadprog = derive2 { name="ROI.plugin.quadprog"; version="0.2-5"; sha256="1c4fd16kgg60gfs52xc64ii4kzl8fb8qz3rpy69d08avb4q6grir"; depends=[quadprog ROI slam]; };
   ROI_plugin_scs = derive2 { name="ROI.plugin.scs"; version="0.3-0"; sha256="0krlrmw85j1g35pvh4ig10djb6y6akyrfymkfk4dqg751w7mb4fm"; depends=[Matrix ROI scs slam]; };
   ROI_plugin_symphony = derive2 { name="ROI.plugin.symphony"; version="0.2-5"; sha256="1kpa82g33i2fdcnkpcqdpslj14ilrl7cp0fq1jmp4vj8ddz1s9g5"; depends=[ROI Rsymphony slam]; };
   ROMIplot = derive2 { name="ROMIplot"; version="1.0"; sha256="1njbsvnz7wrsv9l1p70p1ygmckaibz5i6jmvb0sfalp5jdcgl85n"; depends=[MortalitySmooth RCurl]; };
+  ROP = derive2 { name="ROP"; version="1.0"; sha256="12gh83r3hp1qdmw3p5rr1wfhsh90pirx67q456gl9ai6zgd8nkq8"; depends=[ROCR]; };
   ROSE = derive2 { name="ROSE"; version="0.0-3"; sha256="12b9grh3rgaa07blbnxy8nvy5gvpd45m43bfqb3m4k3d0655jpk2"; depends=[]; };
   ROlogit = derive2 { name="ROlogit"; version="0.1.2"; sha256="09j9c24f7plzpnnhpmzdi4gapb7w1377ksjwk6i2xpyr4bfsrr5k"; depends=[evd survival]; };
   ROpenDota = derive2 { name="ROpenDota"; version="0.1.2"; sha256="17s73yj2w5hlpy09ad83m4s2d9shg5h4zg64wvbp1ivyvpp7l308"; depends=[jsonlite RCurl]; };
   ROpenFIGI = derive2 { name="ROpenFIGI"; version="0.2.8"; sha256="0fvd25vsqkgi3jv4s2lnfag5qksyzyb48d7rhfw6z8piz37n4xaj"; depends=[httr jsonlite]; };
   ROpenWeatherMap = derive2 { name="ROpenWeatherMap"; version="1.1"; sha256="0h1yw93v06bx8svhghh1fsrf837qax9896klh64b06djpgg9ngb9"; depends=[httr jsonlite RCurl]; };
-  ROptEst = derive2 { name="ROptEst"; version="1.0.1"; sha256="0160xs3bmk1bdan7gkibc50qfzxlmi413grvs0bib74xlr0x2kgj"; depends=[distr distrEx distrMod RandVar RobAStBase startupmsg]; };
-  ROptEstOld = derive2 { name="ROptEstOld"; version="0.9.2"; sha256="0blf34xff9pjfy983xm7a27xqkh9173nk64ysas6f0g4h31gh8ax"; depends=[distr distrEx evd RandVar]; };
-  ROptRegTS = derive2 { name="ROptRegTS"; version="0.9.1"; sha256="1a8pbn63wh2w2n409yzbwvarvhphcn82rdqjh407ch3k3x6jz3r5"; depends=[distr distrEx RandVar ROptEstOld]; };
-  ROptSpace = derive2 { name="ROptSpace"; version="0.1.2"; sha256="0g5v4kf5kkylc3agizv2r534dnbgkjap1x146hdgl4jx2ggddnfk"; depends=[Rdpack]; };
+  ROptEst = derive2 { name="ROptEst"; version="1.1.0"; sha256="147418w2njjqb9f9iga4ap7vmxi80y1np6ksgx8g546daswmdclp"; depends=[distr distrEx distrMod MASS RandVar RobAStBase startupmsg]; };
+  ROptEstOld = derive2 { name="ROptEstOld"; version="1.1.0"; sha256="0wmwijzh614angm272glyikn8g64arj11an58knrgnvjc3lz8rx6"; depends=[distr distrEx evd RandVar]; };
+  ROptRegTS = derive2 { name="ROptRegTS"; version="1.1.0"; sha256="1kjmyn182283llb02kf0ky1fyvw5l4p21q9s64y3hi5pahrqmr1v"; depends=[distr distrEx RandVar ROptEstOld]; };
+  ROptSpace = derive2 { name="ROptSpace"; version="0.2.0"; sha256="119b3q43rkqhyprs0vx9wwsddq3awbj2mizzwqhpjjzz4gp5v866"; depends=[Rdpack]; };
   ROptimizely = derive2 { name="ROptimizely"; version="0.2.0"; sha256="059zfn6y687h989wryvpqwgnp9njrrr4ys0gf1ql4pw85b2c50dy"; depends=[httr jsonlite]; };
   ROracle = derive2 { name="ROracle"; version="1.3-1"; sha256="07zqzwaq5iqkjcmns2ahl1l71xjlznialb3dbyl4lwsh3p3fhf2n"; depends=[DBI]; };
-  RPANDA = derive2 { name="RPANDA"; version="1.3"; sha256="0rah5l5nfjs65zxgsgsy3q3vaph6qkr7p41x3arfhjsyma96p0zn"; depends=[ape BioGeoBEARS cluster corpcor deSolve fpc igraph mvMORPH mvtnorm phytools picante pspline pvclust TESS]; };
+  RPANDA = derive2 { name="RPANDA"; version="1.4"; sha256="005dc04h0lv2fi6i3qspyqyd0c134ad9c80ar3m6ahqzk369kq6w"; depends=[ape BioGeoBEARS cluster corpcor deSolve fpc geiger glassoFast igraph mvMORPH mvtnorm phytools picante pspline pvclust TESS]; };
   RPCLR = derive2 { name="RPCLR"; version="1.0"; sha256="03kpyszsjb656lfwx2yszv0a9ygxs1x1dla6mpkhcnqw00684fab"; depends=[MASS survival]; };
   RPEXE_RPEXT = derive2 { name="RPEXE.RPEXT"; version="0.0.1"; sha256="0m5ml8ywxrf66mjz6m3xp1lajd7wdq9g7xsaln8n7ykq7h5615fc"; depends=[]; };
   RPEnsemble = derive2 { name="RPEnsemble"; version="0.4"; sha256="0y9g22swcz0m5jbzi87ahxw27fb3jlf3iwvxb73kkzixqlvksw9y"; depends=[class MASS]; };
@@ -2981,41 +3106,42 @@ in with self; {
   RPMM = derive2 { name="RPMM"; version="1.25"; sha256="1j48dh434wfhfzka0l21w6f73qlwfm70r9gdddhn504i2d5m4jph"; depends=[cluster]; };
   RPPairwiseDesign = derive2 { name="RPPairwiseDesign"; version="1.0"; sha256="0k2vh698rhs5a0b5vhyvrnnwqnagdzs591zx6hn9vbmm8rm4y1dm"; depends=[]; };
   RPPanalyzer = derive2 { name="RPPanalyzer"; version="1.4.5"; sha256="0cf4mb7mjp7x3k7083c8n8fjbvrmcgq359wh6pdyj817mgkanqzv"; depends=[Biobase gam ggplot2 gplots Hmisc lattice limma quantreg]; };
+  RPS = derive2 { name="RPS"; version="1.0.1"; sha256="16n6wknw2m56kwi6rswgxjwjqblhaz5gyw94f96a7l6navqnvlp4"; depends=[ape geomorph Gmedian igraph MASS matlab]; };
   RPostgreSQL = derive2 { name="RPostgreSQL"; version="0.6-2"; sha256="1mdhw5821v2h7hpa53v10wz53k4i90r0vb6a3dia5gq8f9j1h088"; depends=[DBI]; };
   RPostgres = derive2 { name="RPostgres"; version="1.1.1"; sha256="1s25lkb69dkc5zk5ikbqa325jw5kfavghsq7s26mrcng4va9dz6i"; depends=[BH bit64 blob DBI hms plogr Rcpp withr]; };
-  RPresto = derive2 { name="RPresto"; version="1.3.0"; sha256="01w832ia4c44nhir5rzw33qa8h7afmf04vkfdlg32jaqi1gv5861"; depends=[DBI httr jsonlite openssl Rcpp stringi]; };
-  RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.11"; sha256="0q05hdlbgbjydi0x80kgfayfkisalvmb9wy1n6afcw66pbikyb4l"; depends=[Rcpp RCurl]; };
+  RPresto = derive2 { name="RPresto"; version="1.3.2"; sha256="14cwdm1r7x97l086hczrkaskx21agi7d8isklnkplchq5gnqs9ir"; depends=[DBI httr jsonlite openssl Rcpp stringi]; };
+  RProtoBuf = derive2 { name="RProtoBuf"; version="0.4.12"; sha256="0slyrlywvxg6m0yqarv3d2g7fmwbbhvgcd408hccp3klppl4dfsq"; depends=[Rcpp RCurl]; };
   RPtests = derive2 { name="RPtests"; version="0.1.4"; sha256="1r30pslbjq3dip41la81jlin2vhxdmayg902x9ryjy554awfgh7j"; depends=[glmnet randomForest Rcpp]; };
   RPublica = derive2 { name="RPublica"; version="0.1.3"; sha256="1w2pn1g44a00ls8kkzj53a739pq6vzp38px2k0yh10rlzimmb21l"; depends=[curl httr jsonlite]; };
   RPushbullet = derive2 { name="RPushbullet"; version="0.3.1"; sha256="15cb1zlfnjaf5z4dqx3xrkbkja152ah7jhs21qhvfl20qz4cyh7r"; depends=[curl jsonlite]; };
   RQDA = derive2 { name="RQDA"; version="0.3-1"; sha256="1kqax4m4n5h52gi0jaq5cvdh1dgl0bvn420dbws9h5vrabbw1c1w"; depends=[DBI gWidgets gWidgetsRGtk2 igraph RGtk2 RSQLite]; };
-  RQEntangle = derive2 { name="RQEntangle"; version="0.1.1"; sha256="1bkx95x1dwa8w6w1qj2aflcsvapa6sipfvqpgngwbp93m0fc10ws"; depends=[iterators itertools]; };
-  RQGIS = derive2 { name="RQGIS"; version="1.0.3"; sha256="0wrzjfxwciirl838lakcw7f6qyqyykqd999c9krll5krqzyq7c3c"; depends=[raster RCurl readr reticulate rgdal sf sp stringr XML]; };
-  RQuantLib = derive2 { name="RQuantLib"; version="0.4.4"; sha256="1pki0c265nmgph9dbz2pyrq8h7295mxswavfdwsr7m1lpbpzk8s5"; depends=[Rcpp zoo]; };
-  RRF = derive2 { name="RRF"; version="1.8"; sha256="09y9f3zx9jcn7rs6an7b0hvjavy2li7rl5nknxzxfx7qnlqajnld"; depends=[]; };
+  RQEntangle = derive2 { name="RQEntangle"; version="0.1.2"; sha256="098s9wxcdxcarvrpn2r88kd9lyshiv9z42k6d2mlqkbcwxpz82vn"; depends=[iterators itertools]; };
+  RQGIS = derive2 { name="RQGIS"; version="1.0.4"; sha256="0x4jilj5nbikgkcg09913v3dgnfw0aqwwx66xajsfk5lqi6w5vjz"; depends=[raster RCurl readr reticulate rgdal sf sp stringr XML]; };
+  RQuantLib = derive2 { name="RQuantLib"; version="0.4.5"; sha256="1q0i6dcyyfkdzpgp6s5izj3wa0280n7a0fv2gvlff9xlrmr3j27x"; depends=[Rcpp zoo]; };
+  RRF = derive2 { name="RRF"; version="1.9"; sha256="1j8s07h0bn8imi0g1lkdwismisd6m4v454nldjp5jl11lffyiiaq"; depends=[]; };
   RRNA = derive2 { name="RRNA"; version="1.0"; sha256="14rcqh95ygybci8hb8ays8ikb22g3850s9f3sgx3r4f0ky52dcba"; depends=[]; };
-  RRPP = derive2 { name="RRPP"; version="0.2.0"; sha256="0wi7b9vwghw96d7v46mq3rpi4iggm1h6948rkbj32zqnxg7sfq3r"; depends=[]; };
+  RRPP = derive2 { name="RRPP"; version="0.3.0"; sha256="0f9p6z8lx63d3d34x6lbpiqq26mipa2rbffkk21z7r3qgb7adzil"; depends=[]; };
   RRTCS = derive2 { name="RRTCS"; version="0.0.3"; sha256="1riz1gjx3c0pf17xwybizb94nm5zgmfsnv6np3afvw831mb1x3l9"; depends=[sampling samplingVarEst]; };
   RRate = derive2 { name="RRate"; version="1.0"; sha256="1q3f2gphdf50aijnk5xqfpxcqfd4jq7byb1gpb0vcnaxgi3a9lwm"; depends=[]; };
   RRedshiftSQL = derive2 { name="RRedshiftSQL"; version="0.1.2"; sha256="03jbml8d19hcg6achnyc4hcnl5j10yvsx59j80r46zyn0flsnizq"; depends=[DBI RPostgreSQL]; };
   RRphylo = derive2 { name="RRphylo"; version="1.0.0"; sha256="1h167w16lky8aa18fc90rgclx1by3qa9d69n72dxmjzy0d14zjc6"; depends=[ape doParallel foreach geiger lmtest mvMORPH phangorn phytools pvclust R_utils rlist scales smatr]; };
-  RRreg = derive2 { name="RRreg"; version="0.6.8"; sha256="1x8jn7wn1vr4wqk1wjmgk7v5lg20giin735gnvf2mm56ji5amq4d"; depends=[doParallel foreach lme4]; };
+  RRreg = derive2 { name="RRreg"; version="0.7.0"; sha256="023yfx5mvpzdhns897ibijc7hbr1771c2k6h1yhiy4b7pnaxl0n6"; depends=[doParallel foreach lme4]; };
   RSA = derive2 { name="RSA"; version="0.9.12"; sha256="0ii7isrk6c1wb3clbwqzr37v2kypwszi4rjf4caip96bmh7jg3kq"; depends=[aplpack ggplot2 lattice lavaan plyr RColorBrewer tkrplot]; };
   RSADBE = derive2 { name="RSADBE"; version="1.0"; sha256="1nzpm88rrzavk0n8iflsx8r3s1xcry15n80zqdw6jijjycz10w1q"; depends=[]; };
   RSAGA = derive2 { name="RSAGA"; version="1.2.0"; sha256="1fkwgjicw8yrnkq1r925c22nn8khz6afksba6jpvm1jbwlkmhpzw"; depends=[gstat plyr rgdal shapefiles]; };
-  RSAP = derive2 { name="RSAP"; version="0.9"; sha256="1sxirfabhpmfm0yiiazc9h1db70hqwva2is1dql6sjfanpl8qanl"; depends=[reshape yaml]; };
   RSAlgaeR = derive2 { name="RSAlgaeR"; version="1.0.0"; sha256="1hp0v2vkj9ixiv541d53kyl0ph3jsdc5w98r81gv5ck5ixrp6bxp"; depends=[cvTools ggplot2 hydroGOF lubridate mblm plyr]; };
   RSCABS = derive2 { name="RSCABS"; version="0.9.3"; sha256="08ykkqx9rdx5s6wg2idxz35ddpsz1lir22vrjs92k51zq0jrkhv9"; depends=[gWidgets gWidgetsRGtk2 R2HTML RGtk2]; };
-  RSDA = derive2 { name="RSDA"; version="2.0.4"; sha256="1pmqwrwjmw5fsvx3aiy8q4w4w0zh81l1118ny5g3rrb5g6ybnrxs"; depends=[abind dplyr FactoMineR ggplot2 glmnet lazyeval nloptr pander princurve purrr RColorBrewer RJSONIO rlang scales scatterplot3d sqldf stringr tibble tidyr tidyselect XML xtable]; };
-  RSEIS = derive2 { name="RSEIS"; version="3.8-1"; sha256="0i4wlym8glsg90fxmzagji45xni2s04jzyrbakkil09n9rpsrl6n"; depends=[RPMG Rwave]; };
-  RSGHB = derive2 { name="RSGHB"; version="1.1.2"; sha256="0b2v17p3a3sy8jc4vy0nq65sdkxyf0b8sf5f78yvdcn5knydah6c"; depends=[]; };
+  RSDA = derive2 { name="RSDA"; version="2.0.8"; sha256="1lnqncjmqci6lbdm2pph6ankwb9vhwi7mvgjip2qvc2ydgyv6gy9"; depends=[abind dplyr FactoMineR ggplot2 ggpolypath glmnet lazyeval nloptr pander princurve purrr randomcoloR reshape RJSONIO rlang scales scatterplot3d sqldf stringr tibble tidyr tidyselect XML xtable]; };
+  RSE = derive2 { name="RSE"; version="1.2"; sha256="0ypz24vag0ipkg04fl2gzqh77kmwryzml6sdsj0l27cczz1yzagw"; depends=[]; };
+  RSEIS = derive2 { name="RSEIS"; version="3.8-3"; sha256="1qrv41r17svz7dyzz1sik5zyqck29mzzxrjhj5q6mvrwag3x7fi5"; depends=[RPMG Rwave]; };
+  RSGHB = derive2 { name="RSGHB"; version="1.2.0"; sha256="0rzmpx95ac8z625rz3sa9hgzv269q0fdq0crl8hdf1yyzrhrjr3d"; depends=[MCMCpack]; };
   RSIP = derive2 { name="RSIP"; version="1.0.0"; sha256="1yddqbnz0av69l53y83m7rnznc42qz66fc3qrispzaajs7p9n8d7"; depends=[ncdf4 raster rasterVis rgdal sp]; };
   RSKC = derive2 { name="RSKC"; version="2.4.2"; sha256="0r9gpwhzscb6rbba3dg13p78pvskahgvsd59biag0shyii3xvwpm"; depends=[flexclust]; };
-  RSNNS = derive2 { name="RSNNS"; version="0.4-10"; sha256="1khsv1sy8jgsl9s5fypcg77lzj811xzrygwnq6ki9v375sk383gh"; depends=[Rcpp]; };
+  RSNNS = derive2 { name="RSNNS"; version="0.4-11"; sha256="0z27rgbqa1lsxvcqyl1456mb0pigvkrx099hdqv7zr4ax4k33547"; depends=[Rcpp]; };
   RSNPset = derive2 { name="RSNPset"; version="0.5.3"; sha256="1llx6anwkl4as0hdyvmsrlg9z8mkn9p1qxgs6kqs39w87gyx0j36"; depends=[doRNG fastmatch foreach qvalue Rcpp RcppEigen]; };
   RSPS = derive2 { name="RSPS"; version="1.0"; sha256="0ynxhgnxsf27qm8r5d9lyd59zksnc3kvx35hy25vff8j3bg7fqgi"; depends=[gridExtra lattice plyr]; };
   RSQLite = derive2 { name="RSQLite"; version="2.1.1"; sha256="1giwk4335sc6yhj3rs8h070g1mwy38kyqyqv6vcfxvskykj7vp6z"; depends=[BH bit64 blob DBI memoise pkgconfig plogr Rcpp]; };
-  RSSL = derive2 { name="RSSL"; version="0.6.1"; sha256="03f0i0v0nygkcci42h4bh7jngxz15wsd78cn2zkzbrqadz1c61r5"; depends=[cluster dplyr ggplot2 kernlab MASS Matrix quadprog Rcpp RcppArmadillo reshape2 scales tidyr]; };
+  RSSL = derive2 { name="RSSL"; version="0.7"; sha256="0sir01ri4j5igwqm5bj9i99s35gli7yzxxpw1fwi83gdmhh800ap"; depends=[cluster dplyr ggplot2 kernlab MASS Matrix quadprog Rcpp RcppArmadillo reshape2 scales tidyr]; };
   RSSOP = derive2 { name="RSSOP"; version="1.1"; sha256="119xrxpaf68qdb2kj2pbaja6im2nbxsgibb1bnlpnc3fcxkmqcsf"; depends=[]; };
   RSSampling = derive2 { name="RSSampling"; version="1.0"; sha256="0p10l7qmksx4ysz1jb84f9nbqzig8wxhwy33yk8hq29nb5i4c9ik"; depends=[LearnBayes]; };
   RSVGTipsDevice = derive2 { name="RSVGTipsDevice"; version="1.0-7"; sha256="0jdr8l0hp4kzsvlgs8j1m74sr98z4v2lmiqinmc238m406nhppab"; depends=[]; };
@@ -3023,7 +3149,8 @@ in with self; {
   RSauceLabs = derive2 { name="RSauceLabs"; version="0.1.6"; sha256="1p7hw6vnlg6w5ggmfpc3q3s6n1fikjkjnxzz97jifiy0zwn5dp9i"; depends=[data_table httr jsonlite whisker xml2]; };
   RSclient = derive2 { name="RSclient"; version="0.7-3"; sha256="07mbw6mcin9ivsg313ycw2pi901x9vjpmi6q7sms1hml4yq50k6h"; depends=[]; };
   RSeed = derive2 { name="RSeed"; version="0.1.60"; sha256="0rvb6w4z5c2wcdgx5w6vv7c8il8d0096pgv3fyvw21ag25z605jc"; depends=[graph RBGL sybil]; };
-  RSentiment = derive2 { name="RSentiment"; version="2.2.1"; sha256="0djp530yzj5a6y5nqk98pdvsgy9apqcqvkz0yjqx6856d9wrycm0"; depends=[NLP openNLP plyr stringr]; };
+  RSelenium = derive2 { name="RSelenium"; version="1.7.4"; sha256="0djd6bgy2vr85pmcvnq0h2dji20laz852kpn9q8rswxgqb59lqk2"; depends=[binman caTools httr openssl wdman XML]; };
+  RSentiment = derive2 { name="RSentiment"; version="2.2.2"; sha256="15d1llzxg1apkwykpb7pic2d5lfj9i9a55hab067wrz2yq5jsyfa"; depends=[NLP openNLP plyr stringr]; };
   RSiena = derive2 { name="RSiena"; version="1.2-12"; sha256="1bc0vdqqzkf3q3b6rzqiwd29lcq8vbvlj2qkxbx6v8wjphycz6rw"; depends=[lattice MASS Matrix]; };
   RSiteCatalyst = derive2 { name="RSiteCatalyst"; version="1.4.15"; sha256="13mrqf458m43g435g4pbg49pid63f4ap1r8jzl84mvj1b36hy4q6"; depends=[base64enc digest httr jsonlite plyr stringr]; };
   RSmartlyIO = derive2 { name="RSmartlyIO"; version="0.1.2"; sha256="0phkk79ng4r54w3d4ajl505gs8svlzdf1g6q50lhraq2cbllbvgx"; depends=[RCurl]; };
@@ -3034,6 +3161,7 @@ in with self; {
   RStoolbox = derive2 { name="RStoolbox"; version="0.2.3"; sha256="06b54g186bwgl5g8wkbj6q05bdy6sqvx433xwwvj7az1qxpa5kwr"; depends=[caret codetools doParallel foreach geosphere ggplot2 raster Rcpp RcppArmadillo reshape2 rgdal rgeos sp XML]; };
   RStorm = derive2 { name="RStorm"; version="0.902"; sha256="1apk358jwzg5hkrcq8h39rax1prgz9bhkz9z51glmci88qrw1frv"; depends=[plyr]; };
   RStripe = derive2 { name="RStripe"; version="0.1"; sha256="0vp7zsd5xm8rf7196fivb76kkmxfx3gawxlyjhn9xqv92vawivra"; depends=[httr jsonlite RCurl]; };
+  RSuite = derive2 { name="RSuite"; version="0.33-246"; sha256="0npaafcz4afpcyvwp7bjyc7vlsypid03rspwb00sf0z3v8k6k1r9"; depends=[devtools git2r httr jsonlite logging processx roxygen2]; };
   RSurveillance = derive2 { name="RSurveillance"; version="0.2.0"; sha256="1lvl9msnd8l9svd9nyivx1cqfmcxirxvfjfj0xv7yjklza8af7w3"; depends=[epiR epitools mc2d]; };
   RSurvey = derive2 { name="RSurvey"; version="0.9.3"; sha256="0yk969jdvpgv01zbmk4zyxcmrbdizh37bddj1k128ndyf191z37x"; depends=[colorspace inlmisc MBA raster rgdal rgeos sp]; };
   RSvgDevice = derive2 { name="RSvgDevice"; version="0.6.4.4"; sha256="0vplac5jzg6bmvbpmj4nhiiimsr9jlbk8mzyifnnndk9iyf2lcmz"; depends=[]; };
@@ -3044,7 +3172,8 @@ in with self; {
   RTaxometrics = derive2 { name="RTaxometrics"; version="2.3"; sha256="02446y86g21i37ycavg0xc1ggxk0k93d38n71fis9fav06lywxx3"; depends=[]; };
   RTextTools = derive2 { name="RTextTools"; version="1.4.2"; sha256="1j3zfywq8xgax51mbizxz704i3ys4vzp8hyi5kkjzq6g2lw7ywq2"; depends=[caTools e1071 glmnet ipred maxent nnet randomForest SparseM tau tm tree]; };
   RTextureMetrics = derive2 { name="RTextureMetrics"; version="1.1"; sha256="0d0mvpmcpd62cvqlajrqp32lnvpflyf9bqvdzly2v8v1kb8274fc"; depends=[]; };
-  RTransProb = derive2 { name="RTransProb"; version="0.3.0"; sha256="010nsw97b0yi5l6fkwx04aacv47fww9lp7pgjdm8nb7gg9yif2bx"; depends=[caret chron e1071 expm MASS Matrix matrixStats neuralnet nnet pracma Rcpp RcppArmadillo zoo]; };
+  RTransProb = derive2 { name="RTransProb"; version="0.3.3"; sha256="1fl8ag7aizj7k7j5ypx632qa98jp3wp8z3mp5z490n1277ajzrkb"; depends=[caret chron e1071 expm MASS Matrix matrixStats neuralnet nnet pracma Rcpp RcppArmadillo zoo]; };
+  RTransferEntropy = derive2 { name="RTransferEntropy"; version="0.2.7"; sha256="16mrhbjg0s09vqxwllsm1q7wzx0kma7gfzyh0szhcf62z5y0a2x1"; depends=[future future_apply Rcpp]; };
   RTriangle = derive2 { name="RTriangle"; version="1.6-0.10"; sha256="07ya95gmv53i2argqwgad6wd4sslql2wl1rkvsmgsvmhsb4wp9hd"; depends=[]; };
   RUnit = derive2 { name="RUnit"; version="0.4.32"; sha256="1wc1gwb7yw7phf8b0gkig6c23klya3ax11c6i4s0f049k42r78r3"; depends=[]; };
   RVAideMemoire = derive2 { name="RVAideMemoire"; version="0.9-69-3"; sha256="18m4f1h0jnc8k03vpmyr8gcr4l6k0anjy660qrz8sqcaasp3ikj1"; depends=[ade4 boot car cramer dunn_test FactoMineR lme4 MASS mixOmics multcompView nnet pls pspearman vegan]; };
@@ -3052,12 +3181,13 @@ in with self; {
   RVideoPoker = derive2 { name="RVideoPoker"; version="0.3"; sha256="06s4dlw0pw8rcq5b31xxqdpdk396rf27mai2vpvmn585vbm1ib7a"; depends=[pixmap rpanel tkrplot]; };
   RViennaCL = derive2 { name="RViennaCL"; version="1.7.1.7"; sha256="08mhn6732sb284y4garx0nvhad4r42pk39p3r82fad4c1c3rxkhg"; depends=[]; };
   RVowpalWabbit = derive2 { name="RVowpalWabbit"; version="0.0.12"; sha256="1x3pq6cnkjashf49imrw76xkw9nzqgn9132l03l9v4vacgh0s47m"; depends=[Rcpp]; };
-  RVsharing = derive2 { name="RVsharing"; version="1.7.0"; sha256="1z1jwj6dzyib8sxpz4p4wpiizfhxz6sp62nnig779rhnv7wfkqqf"; depends=[kinship2]; };
   RVtests = derive2 { name="RVtests"; version="1.2"; sha256="0k7w6ml981zvr5bix197qw4kaf7rz5jqnwqlxf7aryxbm39gk16c"; depends=[glmnet pls spls]; };
   RWBP = derive2 { name="RWBP"; version="1.0"; sha256="104vr2cdk185hh4zn3vmqvb14p1q8ifk11wdgvk7fli1m1zxxwdd"; depends=[igraph lsa RANN SnowballC]; };
+  RWDataPlyr = derive2 { name="RWDataPlyr"; version="0.6.2"; sha256="1928hyfmy21s586nafd5qajbypqslc96zfmxbi42rcmvzim16v3k"; depends=[data_table dplyr feather Rcpp tibble tidyr xts zoo]; };
   RWebLogo = derive2 { name="RWebLogo"; version="1.0.3"; sha256="1n65mlnr163ywjnyyngnigbj0wpgkr38c3nx8hw5r8mwjnf3d617"; depends=[findpython]; };
-  RWeka = derive2 { name="RWeka"; version="0.4-38"; sha256="1c0jvz2d04h31g4mp8sg9vrp5138n97gavji18yiij7pd11g5qda"; depends=[rJava RWekajars]; };
-  RWekajars = derive2 { name="RWekajars"; version="3.9.2-1"; sha256="006n7m3qxnzvfhkzcr0nbwqdlhygzdhyp8x3534dx6075bm00v0f"; depends=[rJava]; };
+  RWeightedKmeans = derive2 { name="RWeightedKmeans"; version="1.1.0"; sha256="07qnwcg4b4dls6jgk1jz23s4y11ml86hs9ghmd3hdh5rcmri879s"; depends=[clusterCrit fpc]; };
+  RWeka = derive2 { name="RWeka"; version="0.4-39"; sha256="00sg0k7pcm654agm7dd6sq6yhwk65q6pfp7m92d825m2wpzlzn0d"; depends=[rJava RWekajars]; };
+  RWekajars = derive2 { name="RWekajars"; version="3.9.3-1"; sha256="16syvpc9qfn19sjdp3jikmzccj198ybr8dar7fajfaqsfms2kgfw"; depends=[rJava]; };
   RWiener = derive2 { name="RWiener"; version="1.3-1"; sha256="0w12xvc18l002m8q6ad3laa667xzqjbcfqf0vvcmicgw2j3bbq6h"; depends=[]; };
   RWildbook = derive2 { name="RWildbook"; version="0.9.3"; sha256="1pznzmv8n33hhj61h07fha1gzafcx705n8323cnz3mx6ziijfh28"; depends=[data_table jsonlite marked]; };
   RXKCD = derive2 { name="RXKCD"; version="1.8-2"; sha256="081zrx293z4009p6fj2za0mkf04nikxmg3i45l667qvy7nmajqlc"; depends=[jpeg png RJSONIO]; };
@@ -3069,19 +3199,20 @@ in with self; {
   RZigZag = derive2 { name="RZigZag"; version="0.1.6"; sha256="1sb1lmm5vnzkbzqxbmipkm2zb01zg2x15jgyrsplardyy8kpqxn7"; depends=[Rcpp RcppEigen]; };
   RZooRoH = derive2 { name="RZooRoH"; version="0.1.1"; sha256="10l7i4fdjvq921ngbcd5kmbaq9zvl44p5clyd6zyq8d7598ffz77"; depends=[data_table doParallel foreach iterators RColorBrewer]; };
   RaPKod = derive2 { name="RaPKod"; version="0.9"; sha256="1qxzi2lf431zd44bcd98ybhzydy1cz12g864l6r668jk91aqy1qg"; depends=[kernlab MASS proxy Rcpp RcppArmadillo]; };
+  RaceID = derive2 { name="RaceID"; version="0.1.1"; sha256="0aw6jkjval1wm210i32znwjw1vsff8b95bam9fnss5rg1adha2j1"; depends=[cluster coop FateID fpc ica igraph irlba locfit MASS Matrix pheatmap quadprog randomForest RColorBrewer Rtsne vegan]; };
   RadOnc = derive2 { name="RadOnc"; version="1.1.4"; sha256="1ri6ybzhfdgbrbfcy12mmvv2ipg61az7vwp1dbjyzs8mgsc1cxb5"; depends=[geometry oro_dicom ptinpoly rgl]; };
   RadTran = derive2 { name="RadTran"; version="1.0"; sha256="1sb8d4y3b37akbxhdavxrkp34zn3ip061b7gzy0ga57pyn76cvpn"; depends=[ReacTran rootSolve]; };
   RadioSonde = derive2 { name="RadioSonde"; version="1.4"; sha256="1v9jdpynmb01m3syhas1s08xxlvjawhlvjkyhils2iggi4xw4hiq"; depends=[]; };
   Radviz = derive2 { name="Radviz"; version="0.7.0"; sha256="0x1b3s3i3f775m7ragvzpdswljry8adbkjb6aq35aqasnkvvnysq"; depends=[gridBase hexbin KernSmooth MASS]; };
-  RagGrid = derive2 { name="RagGrid"; version="0.1.1"; sha256="0jx3ch42ilcf6baw0pv42cs9lbhharma78bd8vps403p69ray4z8"; depends=[crosstalk htmltools htmlwidgets knitr]; };
+  RagGrid = derive2 { name="RagGrid"; version="0.2.0"; sha256="0crnpd75lyhd0awzqzqy7bzw4ydgxpyhy1ybb1ff4qsnisbjdbba"; depends=[crosstalk htmltools htmlwidgets knitr]; };
   Ramble = derive2 { name="Ramble"; version="0.1.1"; sha256="0225za85i5nvf8l89i5bz7nxsxykd3v9fp1wgihmncca6n8vhgpl"; depends=[]; };
-  Rambo = derive2 { name="Rambo"; version="1.1"; sha256="1yc04xsfkc54y19g5iwambgnlc49ixjjvfrafsgis2zh5w6rjwv8"; depends=[sna]; };
+  Rambo = derive2 { name="Rambo"; version="1.1.1"; sha256="036rvjj6gcnf2gg5xl55n5p8j1pzifb9wmlpwnymz1csxgkl477i"; depends=[sna]; };
   RandMeta = derive2 { name="RandMeta"; version="0.1.0"; sha256="0bh3rkdfmwqym47q8f90pw3mmx7q8jyp4rz16ggqrmk1b5bdyqjb"; depends=[]; };
   RandPro = derive2 { name="RandPro"; version="0.2.0"; sha256="1bhbg6lvgr9h6rq3g3ljm2422ngjb18maj80l7f659ql88c8h6mj"; depends=[caret e1071]; };
-  RandVar = derive2 { name="RandVar"; version="1.0.1"; sha256="0vj0p46xmj4129m6r5zg85fnvb5kx1ardwwk55nqypkxd0v58a4j"; depends=[distr distrEx startupmsg]; };
+  RandVar = derive2 { name="RandVar"; version="1.1.0"; sha256="1kb7b12laf2vvc2m3xfh8wdxb0vcapns52qfbkpn8hg6ba75s1px"; depends=[distr distrEx startupmsg]; };
   RandomFields = derive2 { name="RandomFields"; version="3.1.50"; sha256="0j7852wvclglp820y2x5r19gsr6ciygbbpl5qvwj1khnlz1hfsid"; depends=[RandomFieldsUtils sp]; };
   RandomFieldsUtils = derive2 { name="RandomFieldsUtils"; version="0.3.25"; sha256="0nxk7jhr61l9h76hf96f7ypakl4wip144c0gzr6rqsja6m75rjz3"; depends=[]; };
-  RanglaPunjab = derive2 { name="RanglaPunjab"; version="2.3.1"; sha256="0hmami515jv916lxdwv31w3w2bjn954qwibvgw1qlqn8d5swndiw"; depends=[jpeg shiny tidyverse]; };
+  RanglaPunjab = derive2 { name="RanglaPunjab"; version="2.3.4"; sha256="01j3gww9kil02d44jwlkz6j7lwn2him830bnshkly0s7mgh22pgr"; depends=[jpeg shiny tidyverse]; };
   RankAggreg = derive2 { name="RankAggreg"; version="0.6.5"; sha256="031mff1zydxqygx8bn3g0qpwq08kaq5bpmzy6z2y0fa03hgsxz5c"; depends=[gtools]; };
   RankResponse = derive2 { name="RankResponse"; version="3.1.1"; sha256="04s588zbxcjgvpmbb2x46bbf5l15xm7pwiaxjgc1kn1pn6g1080c"; depends=[]; };
   Rankcluster = derive2 { name="Rankcluster"; version="0.94"; sha256="0ak6cpm073ym4h9l3j7pq0ks9h4is1hzxfjn52j23nc5ifq3fjpq"; depends=[Rcpp RcppEigen]; };
@@ -3096,6 +3227,7 @@ in with self; {
   Rbitcoin = derive2 { name="Rbitcoin"; version="0.9.2"; sha256="0ndq4kg1jq6h0jxwhpdp8sw1n5shg53lwa1x0bi7rifmy0gnh66f"; depends=[data_table digest RCurl RJSONIO]; };
   Rblpapi = derive2 { name="Rblpapi"; version="0.3.8"; sha256="1d1b3rdp9zqz9x6xb7zmbs4yrz339qjvlhif7s8ifcz1zdpzzhal"; depends=[BH Rcpp]; };
   Rborist = derive2 { name="Rborist"; version="0.1-8"; sha256="0zr8vfbv11ascng7n2zv5xbqv7h0r0bycwn8bqlq8q10y2lyxg70"; depends=[Rcpp RcppArmadillo]; };
+  Rcan = derive2 { name="Rcan"; version="1.3.61"; sha256="1fbs72f5q5c9sn0m14izna2dpppjy4bgm4sfbhpybbkfkj567mqq"; depends=[data_table ggplot2 scales]; };
   Rcapture = derive2 { name="Rcapture"; version="1.4-2"; sha256="1nsxy5vpfv7fj03i6l5pgzjm0cldwqxxycnvqkfkshbryjcyl0ps"; depends=[]; };
   RcellData = derive2 { name="RcellData"; version="1.3-2"; sha256="1zzkgpj2pc42xzz5pspyj981a04gjpna4br3lxna255366ijgz4l"; depends=[]; };
   Rcereal = derive2 { name="Rcereal"; version="1.2.1"; sha256="0nl4p0wqpni16z62610sqcxsz1x6kannl2s1zakpmjkk80pyxlk6"; depends=[]; };
@@ -3104,8 +3236,8 @@ in with self; {
   RchivalTag = derive2 { name="RchivalTag"; version="0.0.7"; sha256="0i25rj3f54km2gdr8izgvqdbdbcq4nikywn5narm7sg79fv43pd4"; depends=[mapdata maps maptools ncdf4 oceanmap PBSmapping plyr raster rgeos sp]; };
   Rchoice = derive2 { name="Rchoice"; version="0.3-1"; sha256="1mx50270vbhvng4vdcc6w94f3l890vjl41y07bqkv40n93fxvffw"; depends=[Formula maxLik msm plm plotrix]; };
   Rclean = derive2 { name="Rclean"; version="1.0.0"; sha256="065jq957xsk9p1nnzf8ilp9swjfxhydgc7xg57lfcg9hz99ckwfr"; depends=[formatR igraph jsonlite]; };
-  Rcmdr = derive2 { name="Rcmdr"; version="2.4-4"; sha256="0n15wkhn8hfhcpz0n2ngxkfaysjsizksxxr1fhpfjmlpy4wxxnx0"; depends=[abind car effects RcmdrMisc relimp tcltk2]; };
-  RcmdrMisc = derive2 { name="RcmdrMisc"; version="1.0-10"; sha256="1fxcm0iwxdqh9qv2g6w7sqbg23zgl5z5ib2x69j5n10fglx89m8f"; depends=[abind car colorspace e1071 foreign haven Hmisc MASS nortest readstata13 readxl sandwich]; };
+  Rcmdr = derive2 { name="Rcmdr"; version="2.5-1"; sha256="0jw4bvv6wjznra6n9ad3hqvgfi5m9i8axyhms1kgqrcd5n4zcfcf"; depends=[abind car effects RcmdrMisc relimp tcltk2]; };
+  RcmdrMisc = derive2 { name="RcmdrMisc"; version="2.5-1"; sha256="10cnvk541cx8lzapra2104dn1kh780phzz29dwvfwrx4k9vfbh7i"; depends=[abind car colorspace e1071 foreign haven Hmisc MASS nortest readstata13 readxl sandwich]; };
   RcmdrPlugin_BiclustGUI = derive2 { name="RcmdrPlugin.BiclustGUI"; version="1.1.1"; sha256="1sdc8ibggz8wpn77g7hddyl7lg86dbyw8qax63p6cqx1pfhb4rra"; depends=[BcDiag BiBitR BicARE biclust fabia gplots iBBiG Rcmdr rqubic s4vd superbiclust viridis]; };
   RcmdrPlugin_DoE = derive2 { name="RcmdrPlugin.DoE"; version="0.12-3"; sha256="1iifn71kjjgcp7dfz2pjq57mgbv4rrznrl3b3k9gdc2dva1z9zvc"; depends=[DoE_base DoE_wrapper FrF2 Rcmdr RcmdrMisc relimp]; };
   RcmdrPlugin_EACSPIR = derive2 { name="RcmdrPlugin.EACSPIR"; version="0.2-2"; sha256="10r6rb0fwlilcnqxa38zh7yxc54x1a0by5x4f6gzdn9zs7aj5l1r"; depends=[abind ez nortest R2HTML Rcmdr RcmdrMisc reshape]; };
@@ -3121,25 +3253,22 @@ in with self; {
   RcmdrPlugin_KMggplot2 = derive2 { name="RcmdrPlugin.KMggplot2"; version="0.2-5"; sha256="069kpvhflk0rwwll0vyxfdrln1lzr1zhzfzm39si63ji6v7l6msb"; depends=[ggplot2 ggthemes plyr Rcmdr RColorBrewer scales survival tcltk2]; };
   RcmdrPlugin_MA = derive2 { name="RcmdrPlugin.MA"; version="0.0-2"; sha256="1zivlc0r2mkxpx23ba76njmb2wnnjijysvza4f24dg4l47d0sr2p"; depends=[MAd metafor Rcmdr]; };
   RcmdrPlugin_MPAStats = derive2 { name="RcmdrPlugin.MPAStats"; version="1.2.2"; sha256="1ynj42p12ncgrbghd8w7mkyys2cq9r9dpbir57rj3k5l46yzj7d5"; depends=[ordinal Rcmdr]; };
-  RcmdrPlugin_NMBU = derive2 { name="RcmdrPlugin.NMBU"; version="1.8.8"; sha256="1s7947zvrhjrc7vchvaajp2q7xdqfg5vsmg6r7ym416cqq39i5kd"; depends=[MASS mixlm phia pls Rcmdr xtable]; };
+  RcmdrPlugin_NMBU = derive2 { name="RcmdrPlugin.NMBU"; version="1.8.9"; sha256="1lwxmhla66nxrb6ph81vxa60pzga80z0vniq725y37w5zlqzgmcq"; depends=[MASS mixlm phia pls Rcmdr xtable]; };
   RcmdrPlugin_OptimClassifier = derive2 { name="RcmdrPlugin.OptimClassifier"; version="0.1.2"; sha256="0gisjw1iniihy2c2mr9f9pxfnfr2dc0s482wb9yfn88vknx8d0rn"; depends=[OptimClassifier Rcmdr RcmdrMisc]; };
   RcmdrPlugin_PcaRobust = derive2 { name="RcmdrPlugin.PcaRobust"; version="1.1.4"; sha256="17rq3sv8payazjjn5j37cgd6df5b62d2y8al3grw6hw5nfba7lvn"; depends=[Rcmdr robustbase rrcov tkrplot]; };
   RcmdrPlugin_RMTCJags = derive2 { name="RcmdrPlugin.RMTCJags"; version="1.0-2"; sha256="04g5a1dpch54k5ckfkrg4vsap1nc3af1i0i559qigv3hy8n7pm80"; depends=[coda igraph Rcmdr rjags rmeta runjags]; };
   RcmdrPlugin_ROC = derive2 { name="RcmdrPlugin.ROC"; version="1.0-18"; sha256="0alwsvwry4k65ps00zvdqky9rh663bbfaw15lhwydbgcpqdkn2n6"; depends=[pROC Rcmdr ResourceSelection ROCR]; };
-  RcmdrPlugin_RiskDemo = derive2 { name="RcmdrPlugin.RiskDemo"; version="1.9"; sha256="014x9w9qhi0fl8y35k918m25ml1sr1pndcrdih7v3dibzy18qbbn"; depends=[demography Rcmdr rgl]; };
-  RcmdrPlugin_SCDA = derive2 { name="RcmdrPlugin.SCDA"; version="1.1"; sha256="0pd765ndh8d7hy6spds3r4pi09i0ak4b1ygwczp6yr2zcs1aikbc"; depends=[Rcmdr SCMA SCRT SCVA]; };
+  RcmdrPlugin_RiskDemo = derive2 { name="RcmdrPlugin.RiskDemo"; version="2.0"; sha256="1mclhcb138f13p7ghiggdm8zjrgxqrn3zn8biygfy6yvhw2j396p"; depends=[demography ftsa Rcmdr rgl]; };
+  RcmdrPlugin_SCDA = derive2 { name="RcmdrPlugin.SCDA"; version="1.1.1"; sha256="0lky4vmia97vcpwsvzprgmkwkdwjwnmi8bdjx3r3w6rrc2lqb6a8"; depends=[Rcmdr SCMA SCRT SCVA]; };
   RcmdrPlugin_SLC = derive2 { name="RcmdrPlugin.SLC"; version="0.2"; sha256="1nwpzmgfla1y05dxf81w0wmvvmvcq5jn5k8phlq30920ia7ybs8g"; depends=[Rcmdr SLC]; };
-  RcmdrPlugin_SM = derive2 { name="RcmdrPlugin.SM"; version="0.3.1"; sha256="10sjh2x02kb6yaxbvd9ihc6777j4iv6wi6k42gyl3k7i2c39fyn3"; depends=[car colorspace Rcmdr RColorBrewer vcd]; };
   RcmdrPlugin_TeachingDemos = derive2 { name="RcmdrPlugin.TeachingDemos"; version="1.1-0"; sha256="0fgl1v1g74ca14pf3mmbv26j09v7jy6ddyap5qavgiy9s8qrwrh8"; depends=[Rcmdr rgl TeachingDemos tkrplot]; };
-  RcmdrPlugin_UCA = derive2 { name="RcmdrPlugin.UCA"; version="4.2-4"; sha256="17ivr48y0wh89nphjzfmgdgpsfsxw4n6bfwjln0crvqhm4xh6qmh"; depends=[randtests Rcmdr TeachingDemos tseries]; };
+  RcmdrPlugin_UCA = derive2 { name="RcmdrPlugin.UCA"; version="4.2-5"; sha256="1skqqkii44ajdwqj6svk19n4z2vi9lp36j7bdhasd9ay3k8f9wgh"; depends=[randtests Rcmdr TeachingDemos tseries]; };
   RcmdrPlugin_aRnova = derive2 { name="RcmdrPlugin.aRnova"; version="0.0.5"; sha256="0ys3565pcbr554yb1gi2h149vhvwc0gdfmh7mz8zzd4367hqn553"; depends=[Rcmdr]; };
   RcmdrPlugin_coin = derive2 { name="RcmdrPlugin.coin"; version="1.0-22"; sha256="0qmdjnjmgq52wgl4llg69q9x7hvwd73mz3swv0sv88v8zqg7xj93"; depends=[coin multcomp Rcmdr survival]; };
   RcmdrPlugin_depthTools = derive2 { name="RcmdrPlugin.depthTools"; version="1.3"; sha256="09mjn5jn4rdj1lh515vr3xlnk615flg13kcwbpk0an2si4xkgm9h"; depends=[depthTools Rcmdr]; };
-  RcmdrPlugin_doex = derive2 { name="RcmdrPlugin.doex"; version="0.2.0"; sha256="0l3c8vwifyl8a7qkfaqxm7cws2cg1g501qa93w5svcgp03yf98mj"; depends=[multcomp Rcmdr]; };
-  RcmdrPlugin_epack = derive2 { name="RcmdrPlugin.epack"; version="1.2.5"; sha256="1577qhac4rldifax5x3l39cddan6dhq2dv4iv2n64nadgrl0259w"; depends=[abind forecast MASS Rcmdr TeachingDemos tseries xts]; };
   RcmdrPlugin_lfstat = derive2 { name="RcmdrPlugin.lfstat"; version="0.8.3"; sha256="1rcr43dqyb9zw9av3awkz0640vmvhxrafal5brnhqnpg4hfbpma3"; depends=[lfstat Rcmdr]; };
   RcmdrPlugin_mosaic = derive2 { name="RcmdrPlugin.mosaic"; version="1.0-7"; sha256="0k6xaz2dfm9ch9lxqsh19jm8d4bbyjj2ffmjjxl57kanb3pvrrwv"; depends=[ENmisc Hmisc Rcmdr vcd]; };
-  RcmdrPlugin_orloca = derive2 { name="RcmdrPlugin.orloca"; version="4.5"; sha256="1rjlc5v9ksndmzcdw5lkqvzxpsanvglm20ppbw49nna8rsylkj08"; depends=[orloca orloca_es Rcmdr]; };
+  RcmdrPlugin_orloca = derive2 { name="RcmdrPlugin.orloca"; version="4.6"; sha256="1n48yckr76j3wrspwyji0jvfn65cmpxplczx403x61sd0b4836xi"; depends=[orloca orloca_es Rcmdr]; };
   RcmdrPlugin_plotByGroup = derive2 { name="RcmdrPlugin.plotByGroup"; version="0.1-0"; sha256="10wc7lnihsrldsynq2s0syr1aqmvfnj9rhgwh1nkk7jlrwcgj0z6"; depends=[lattice Rcmdr]; };
   RcmdrPlugin_pointG = derive2 { name="RcmdrPlugin.pointG"; version="0.6.6"; sha256="0sc3akbpdys353va05b40g3rq8qihw0pmhvv0kckkhsgrbr8mc07"; depends=[Rcmdr RColorBrewer]; };
   RcmdrPlugin_qual = derive2 { name="RcmdrPlugin.qual"; version="2.2.6"; sha256="00wznh0k909cd9vwdj1ag3224xkqnwjsad1bfkgxbszsx0w6xvy9"; depends=[Rcmdr]; };
@@ -3151,21 +3280,22 @@ in with self; {
   RcmdrPlugin_temis = derive2 { name="RcmdrPlugin.temis"; version="0.7.10"; sha256="02rs5xdj6g57frndc87fly0ans16584j4d0rfpy1h72655cz66ab"; depends=[ca lattice latticeExtra NLP R2HTML Rcmdr RColorBrewer slam stringi tcltk2 tm zoo]; };
   Rcolombos = derive2 { name="Rcolombos"; version="2.0.2"; sha256="0l92icjqqm5fxafqwd09lnmv5x6kvjdg8cphlm37q86nslwr5rkk"; depends=[httr]; };
   Rcplex = derive2 { name="Rcplex"; version="0.3-3"; sha256="0abmrqphrpdlc831hwbwx15z4vdgn385kxhnqlbb9v0sjmfyszsl"; depends=[slam]; };
-  Rcpp = derive2 { name="Rcpp"; version="0.12.17"; sha256="08xg8h3w25sdb3xr18g9pa0x8cirkdgljqapxmw56ss1j9fc89s2"; depends=[]; };
+  Rcpp = derive2 { name="Rcpp"; version="0.12.19"; sha256="10mmiaawv9iwglc6z4y51mdpsfb1sivqmwr6xnfqkllcnpabdbk3"; depends=[]; };
   Rcpp11 = derive2 { name="Rcpp11"; version="3.1.2.0"; sha256="1x6n1z7kizagr5ymvbwqb7nyn3lca4d4m0ks33zhcn9gay6g0fac"; depends=[]; };
-  RcppAPT = derive2 { name="RcppAPT"; version="0.0.4"; sha256="0xbaamv3bg08ymbmiq6kwh86p17y6qzgydq02syig2a3ykp0042c"; depends=[Rcpp]; };
-  RcppAlgos = derive2 { name="RcppAlgos"; version="2.0.3"; sha256="0m1hj249hyn6vwhqn2jismqkd07glk7nxqxwpq81rph9wp50ji0a"; depends=[Rcpp]; };
+  RcppAPT = derive2 { name="RcppAPT"; version="0.0.5"; sha256="0188sabgfmgh83yr3hmqpg5cmhllfkxzbxxchqr2r2fmj6x0ib1a"; depends=[Rcpp]; };
+  RcppAlgos = derive2 { name="RcppAlgos"; version="2.2.0"; sha256="0sq482qzg3xa52ny2xfvj4vrrfnk0qng4fqmw5jfaqr806r7sbrp"; depends=[gmp Rcpp]; };
   RcppAnnoy = derive2 { name="RcppAnnoy"; version="0.0.10"; sha256="08s86ak26zybawry6l6l30k1lakc71k2j58539h70dnrmsd15jna"; depends=[Rcpp]; };
-  RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.8.600.0.0"; sha256="15wqk6lnaxf6az9ccvmzpx6pi2cs19ng8j3qvk5zw1niljpp8n3k"; depends=[Rcpp]; };
+  RcppArmadillo = derive2 { name="RcppArmadillo"; version="0.9.100.5.0"; sha256="1iyjqhfjip1nxrkllzh7r1m01jjnx7cahqkf3s557w34p987f2l1"; depends=[Rcpp]; };
   RcppBDT = derive2 { name="RcppBDT"; version="0.2.3"; sha256="0gnj4gz754l80df7w3d5qn7a57z9kq494n00wp6f7vr8aqgq8wi1"; depends=[BH Rcpp]; };
   RcppBlaze = derive2 { name="RcppBlaze"; version="0.2.2"; sha256="0hi7gh7xlmdcyzxsis8wl841d6czbcgb8qdg8y822am1mvc0wmb7"; depends=[BH Matrix Rcpp]; };
-  RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.3"; sha256="0cb04filbr0mymcg891lc0dw2b3fnjmhn8z50xcilb3v72ccrvqg"; depends=[Rcpp]; };
-  RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.9"; sha256="0c6vdrf16f8fyaczzwapzn513wrdklsc8izmzfmfbc58s5500gvk"; depends=[Rcpp]; };
-  RcppCWB = derive2 { name="RcppCWB"; version="0.2.4"; sha256="00zgxdakjza8i0wi6zj7lri8ma0pxnsgccm9q16i2nqqndvk4q34"; depends=[Rcpp]; };
-  RcppClassic = derive2 { name="RcppClassic"; version="0.9.10"; sha256="1q0vld06dp00d2qdwnnrga4n9abiymqw74zpci2kx813n5z1l0yc"; depends=[Rcpp]; };
+  RcppCCTZ = derive2 { name="RcppCCTZ"; version="0.2.5"; sha256="03r7qfhxmn20925yjvqs5cbm255yk4kbrvw16dl2r98argblcmmk"; depends=[Rcpp]; };
+  RcppCNPy = derive2 { name="RcppCNPy"; version="0.2.10"; sha256="175bn75akwgz3vcp0n59kiqqz7q9cwkvih241nj8v810cp4gpmkp"; depends=[Rcpp]; };
+  RcppCWB = derive2 { name="RcppCWB"; version="0.2.6"; sha256="0vfv9v213v7z3y8rg0kn7w6vwvwxg8gmm2s8h8aa44xfi9q1wia2"; depends=[Rcpp]; };
+  RcppClassic = derive2 { name="RcppClassic"; version="0.9.11"; sha256="0aap391fh84342s64v5k43a1vy3cwzg01q3g6ry7mmd2d5h1vv1g"; depends=[Rcpp]; };
   RcppClassicExamples = derive2 { name="RcppClassicExamples"; version="0.1.2"; sha256="0dr2104miy7psr73nicfs84652ai0d5liw6wxcwyrx7fmys3p638"; depends=[Rcpp RcppClassic]; };
   RcppDE = derive2 { name="RcppDE"; version="0.1.6"; sha256="1i9jj595nqpb16y22z2b8fcf0gq1fg0pbiisbd837p1cyw4nff69"; depends=[Rcpp RcppArmadillo]; };
   RcppDL = derive2 { name="RcppDL"; version="0.0.5"; sha256="1gii00bna6k9byaax7gsx42dv1jjnkrp4clbmdq59ybq3vkvw8z2"; depends=[Rcpp]; };
+  RcppDist = derive2 { name="RcppDist"; version="0.1.1"; sha256="02g57xwfipdcljv06krhm02dbqn9kfyj2km6rdg0a7vq9prwdz1x"; depends=[Rcpp RcppArmadillo]; };
   RcppEigen = derive2 { name="RcppEigen"; version="0.3.3.4.0"; sha256="1m6ssq6lvi36ggf26y4hhq996583pxxdb978jnn1x6r9gdb0q0hi"; depends=[Matrix Rcpp]; };
   RcppEigenAD = derive2 { name="RcppEigenAD"; version="1.0.0"; sha256="18zm9hsfqwiicxsdm87ix3qc261ljxxn2s736p6aayx82b6vwkz6"; depends=[BH functional memoise Rcpp RcppEigen Rdpack readr]; };
   RcppExamples = derive2 { name="RcppExamples"; version="0.1.8"; sha256="15iw2vx6ygb03siq743418whhqvfrxk2i4nqn7p9yg1m3jwafxna"; depends=[Rcpp]; };
@@ -3178,38 +3308,39 @@ in with self; {
   RcppMLPACK = derive2 { name="RcppMLPACK"; version="1.0.10-6"; sha256="0vjx6azp3sny6nv5k1cs6vk61hmbllqw8mgvi7zn15p7ilmhsyyi"; depends=[BH Rcpp RcppArmadillo]; };
   RcppMeCab = derive2 { name="RcppMeCab"; version="0.0.1.2"; sha256="0varavfbrqzma176rw0dr9v5chh7pxh5y9g0rs3v7hqnlghp22y2"; depends=[BH Rcpp RcppParallel]; };
   RcppMsgPack = derive2 { name="RcppMsgPack"; version="0.2.2"; sha256="0118ajmgl8gdc1cd47x0pnp4qglszc3j3izw98m6y2gkm3rnkzad"; depends=[BH Rcpp]; };
+  RcppNLoptExample = derive2 { name="RcppNLoptExample"; version="0.0.1"; sha256="1fml6hpa12q0lgg5fg6fi9lz6mckwh345pbh95mld2qagzvmg01n"; depends=[nloptr Rcpp]; };
   RcppNumerical = derive2 { name="RcppNumerical"; version="0.3-2"; sha256="0j0hvwsbidahk2zx3zk7fhc6m9cca27iq3ivx7vdvggz8iqzszrz"; depends=[Rcpp RcppEigen]; };
-  RcppParallel = derive2 { name="RcppParallel"; version="4.4.0"; sha256="1gjqmkzsi1fi0vss1nvq6i77j3aixdxd047mw9vf4l60z2ypr3h1"; depends=[BH]; };
+  RcppParallel = derive2 { name="RcppParallel"; version="4.4.1"; sha256="1y37bpn6ifvlh8ilp78qx518dmal6s0lc16gk029hvy1rdlkr2ga"; depends=[BH]; };
   RcppProgress = derive2 { name="RcppProgress"; version="0.4.1"; sha256="0yk01hfv961zyp569682k9igvhnwqyg5j0n5fm63sxigj82l2xhi"; depends=[]; };
   RcppQuantuccia = derive2 { name="RcppQuantuccia"; version="0.0.2"; sha256="1si5njb8g4g6fjrkqbp3y6z23yxs901nq9kmiwwbqs8di6svc5q3"; depends=[BH Rcpp]; };
-  RcppRedis = derive2 { name="RcppRedis"; version="0.1.8"; sha256="05c4c65ayiqyzmkj2mrgwwflgjk54rf9nmb3rhickj16yy9b071q"; depends=[BH RApiSerialize Rcpp]; };
+  RcppRedis = derive2 { name="RcppRedis"; version="0.1.9"; sha256="08c2c5d3rn3z89yhlymbr8w145y85hlz1bq3g6kz0kwkjfnkbs1x"; depends=[BH RApiSerialize Rcpp]; };
   RcppRoll = derive2 { name="RcppRoll"; version="0.3.0"; sha256="0srzfhzkk42kzrdjnhbb37946jp1p688rgysy6k3i2is8jb21zyb"; depends=[Rcpp]; };
   RcppSMC = derive2 { name="RcppSMC"; version="0.2.1"; sha256="0k2k1pj05i6hf7gpar3r4mbv9cs04bd4v657saq9vhy30300vg49"; depends=[Rcpp RcppArmadillo]; };
   RcppStreams = derive2 { name="RcppStreams"; version="0.1.1"; sha256="0sa0ndnfm89f8lh3ba6jf3gxaan1g97dhlzbmpkwqj22frgggqjw"; depends=[BH Rcpp]; };
   RcppTN = derive2 { name="RcppTN"; version="0.2-2"; sha256="0m2wc5n1fzxv56s4gqqnygb24dbadgrpgjm4bs4hr6qazgjapymf"; depends=[Rcpp]; };
-  RcppTOML = derive2 { name="RcppTOML"; version="0.1.3"; sha256="0krw4104m8drgyf53aq22kl5q0abrd0y4j1fvrwsj1dkbkybas05"; depends=[Rcpp]; };
+  RcppTOML = derive2 { name="RcppTOML"; version="0.1.4"; sha256="0pr941ljn5wc2cjinw8qbqv0x7aw1ssglfidy030v2rhnnv8s762"; depends=[Rcpp]; };
   RcppThread = derive2 { name="RcppThread"; version="0.4.0"; sha256="0snrs66r19zha43xqkgcz1r15f7x8ifg1vyi0d7j175bkmin2jlb"; depends=[Rcpp]; };
   RcppXPtrUtils = derive2 { name="RcppXPtrUtils"; version="0.1.0"; sha256="0833j7hy7dpdxkj1m5cfyxzpp7j0n7mxjc5kx32mdn5s43iaf7yh"; depends=[Rcpp]; };
   RcppXts = derive2 { name="RcppXts"; version="0.0.4"; sha256="143rhz97qh8sbr6p2fqzxz4cgigwprbqrizxpkjxyhq8347g8p4i"; depends=[Rcpp xts]; };
   RcppZiggurat = derive2 { name="RcppZiggurat"; version="0.1.5"; sha256="0zmr3nvm5j0fpwxk3x9kxpwqbr66ldfvd10zy8xlgjbslz9myvfv"; depends=[Rcpp RcppGSL]; };
-  Rcrawler = derive2 { name="Rcrawler"; version="0.1.7-0"; sha256="0r8s3d4dby9vn0qc5lbhab4vh3yl5yifi7ipxafsgffdxislnsdw"; depends=[data_table doParallel foreach httr selectr xml2]; };
+  Rcrawler = derive2 { name="Rcrawler"; version="0.1.8-0"; sha256="03fp1yi8363zwzbzbw1v763r0d65352pp2wzfk6yq8f5h6jhiaxr"; depends=[data_table doParallel foreach httr selectr xml2]; };
   Rcriticor = derive2 { name="Rcriticor"; version="2.0"; sha256="1cnmmcdp2g3syrlld1pm7101cbzxh02cpvqvgsj7mp6zxm2k5plv"; depends=[]; };
   Rcsdp = derive2 { name="Rcsdp"; version="0.1.55"; sha256="1sskjf2vv5alnwirz676d8yphzk2a69wkghhkpxb8my1rjlfdgaw"; depends=[]; };
   Rcssplot = derive2 { name="Rcssplot"; version="0.3.0"; sha256="1qwrwzyqbwwwjf2zx6712q6wj629vf9rjrgscf0fim10fa6k5grn"; depends=[]; };
   Rd2md = derive2 { name="Rd2md"; version="0.0.2"; sha256="07j1nnsk5nyl8kvgvh9f684g6bhc01jiq1fcmq2pnpx57jdzfbpi"; depends=[knitr]; };
-  Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.6.2"; sha256="1hkqy97mh68yzkh4bawjrgf1rlhkh3jz2ky84rg3wgz1mkvrrsx2"; depends=[formatR roxygen2]; };
+  Rd2roxygen = derive2 { name="Rd2roxygen"; version="1.7"; sha256="0rfhhqibgxapbc9jrv08fnm3p5fqkhj7s9yj7kbcck0lygy1kpx4"; depends=[formatR roxygen2]; };
   Rdice = derive2 { name="Rdice"; version="1.0.0"; sha256="1xibvm690808p2g3jch7rh1825yrpgln2hjfclgxjwn822qvs4xr"; depends=[data_table]; };
-  Rdimtools = derive2 { name="Rdimtools"; version="0.3.2"; sha256="0wk6sv2ahxscy4nsk826c9rlq8vxgnflg9banwdxhs6qlqhipnlb"; depends=[ADMM CVXR Matrix Rcpp RcppArmadillo Rcsdp Rdpack RSpectra Rtsne]; };
-  Rdistance = derive2 { name="Rdistance"; version="1.3.2"; sha256="1ajmr58lgc74727jiydfrh4j6ra7vq8hp8nm3l2s3g2mc8n1mqk5"; depends=[]; };
-  Rdpack = derive2 { name="Rdpack"; version="0.8-0"; sha256="0r4mcg7mqb7h0c6pn0vh622vw7kvdpmy51qvhgf753yywfznkwq6"; depends=[bibtex gbRd]; };
-  Rdrools = derive2 { name="Rdrools"; version="1.0.3"; sha256="1y805j2xrv8kgh42s5lig07mb76fcz5yrxal0zaykj16cvid8287"; depends=[Rdroolsjars rJava]; };
+  Rdimtools = derive2 { name="Rdimtools"; version="0.4.0"; sha256="0wlzzhs9a154r2p06zwn6pgvpall7gp56z6a2ish9gyb9152gsij"; depends=[ADMM CVXR Matrix Rcpp RcppArmadillo RcppDE Rcsdp Rdpack RSpectra Rtsne]; };
+  Rdistance = derive2 { name="Rdistance"; version="2.1.2"; sha256="1c9vil4pjd49jmcv7vib98dv31gh794zcxhm30nbv8kx8n16xi0f"; depends=[]; };
+  Rdpack = derive2 { name="Rdpack"; version="0.10-1"; sha256="0bbjnw88h54v40hzim00i8yd3p4rk9i84zfdmgcbnylscwvsf0av"; depends=[bibtex gbRd]; };
+  Rdrools = derive2 { name="Rdrools"; version="1.1.0"; sha256="0my2x5cwfnds0hjc03363l1ydfk5kch9bv8mj0hgwkjs4b7szw8r"; depends=[dplyr magrittr purrr Rdroolsjars rJava rlang tibble]; };
   Rdroolsjars = derive2 { name="Rdroolsjars"; version="1.0.1"; sha256="1l9bc1bwpj10irr973hzkhr04i1f3g998n8hcl2k2i9kgv1naqmz"; depends=[rJava]; };
   Rdsdp = derive2 { name="Rdsdp"; version="1.0.4-2"; sha256="05bk6yqvhzvyfzga1dz34w68nlwl2dc8bvhh3ghd07a61fsnkg4x"; depends=[]; };
   Rdsm = derive2 { name="Rdsm"; version="2.1.1"; sha256="07fc6c2hv0vvg15va552y54cla1mrqsd75w3zh02vc7yd226l4rj"; depends=[bigmemory]; };
   Rdtq = derive2 { name="Rdtq"; version="0.1"; sha256="114pyf95nl132014ygn84xi41c2zf1ii2wfgd1acwnnmfzvdw24s"; depends=[Matrix Rcpp]; };
   Rduino = derive2 { name="Rduino"; version="0.1"; sha256="0r1yy3a2n8a4niasfjn77gv130a062i802r7xhbg0abljv5m6ra5"; depends=[serial]; };
   ReCiPa = derive2 { name="ReCiPa"; version="3.0"; sha256="019vlvgxnqqlwghxygfqggzp2b4x2pqzdrbhaa703zdhm58k0n1g"; depends=[]; };
-  ReIns = derive2 { name="ReIns"; version="1.0.7"; sha256="1r28wyb7yh5aymlnd3yxkqmn4lnfnipfsnpbgl71zql763fchwlg"; depends=[doParallel foreach Rcpp survival]; };
+  ReIns = derive2 { name="ReIns"; version="1.0.8"; sha256="1piwmjav32cwki3jhxzv3ld59gddlm5y5dwc8smwk5gzpfypdzm6"; depends=[doParallel foreach Rcpp survival]; };
   ReacTran = derive2 { name="ReacTran"; version="1.4.3.1"; sha256="05c9jfvj134gy3by7m3r1fbar0m39vaydr7d2py9cakzs44fqfpj"; depends=[deSolve rootSolve shape]; };
   RealVAMS = derive2 { name="RealVAMS"; version="0.4-1"; sha256="13x8yryl5vp3rn6n2hd14ng6cgr3bxkps4y1vanimbwv4faa8116"; depends=[Matrix numDeriv Rcpp RcppArmadillo]; };
   Rearrangement = derive2 { name="Rearrangement"; version="2.1"; sha256="0q253nj62rl65vjsq6503r80qa2j35wac8lv7ydp9w260p28z923"; depends=[quantreg]; };
@@ -3235,16 +3366,15 @@ in with self; {
   RepeatedHighDim = derive2 { name="RepeatedHighDim"; version="2.0.0"; sha256="1n9w4jb25pm0mmsahlfhkp9jmhgp5b21l1g85gm2wbxqkjsg7g0g"; depends=[MASS nlme]; };
   Replicate = derive2 { name="Replicate"; version="1.0.1"; sha256="110pvissyv3dx1wpwpngcg18mpmpml49gcmdykip55s1d3ljf791"; depends=[metafor]; };
   RepoGenerator = derive2 { name="RepoGenerator"; version="0.0.1"; sha256="0d6s2sqyycaqrg32xdkp3pr5i7qmvwrfrjcd7f94a9y3lz4bz5b5"; depends=[git2r httr rmarkdown rstudioapi]; };
-  ReporteRs = derive2 { name="ReporteRs"; version="0.8.10"; sha256="18ivgd3736zcrimcyzfkh5d6h9s1srh7xdz597y596dsssx1lmc6"; depends=[gdtools htmltools knitr png R_utils ReporteRsjars rJava rvg shiny xml2]; };
-  ReporteRsjars = derive2 { name="ReporteRsjars"; version="0.0.4"; sha256="0q11jcbkv9ibmkqr3mka0w5d797s8xb0155kcs5inlcacirp6wvy"; depends=[rJava]; };
   ResistorArray = derive2 { name="ResistorArray"; version="1.0-28"; sha256="055zr4rybgrvg3wsgd9vhyjpvzdskrlss68r0g7rnj4yxkix0kxz"; depends=[]; };
   ResourceSelection = derive2 { name="ResourceSelection"; version="0.3-2"; sha256="08b1aa3183k1y30dwabnd6x353mdp2sn5b908cpv84bs3fdzlrdp"; depends=[MASS Matrix pbapply]; };
   RevEcoR = derive2 { name="RevEcoR"; version="0.99.3"; sha256="1nym263ynjdir5kxv35jnmki9mshlplq0sk3xnjd4ac6f1cfbfqj"; depends=[gtools igraph magrittr Matrix plyr purrr stringr XML]; };
   Rexperigen = derive2 { name="Rexperigen"; version="0.2.1"; sha256="158ksnd1gvzq7ii0ys2v0wrfnr001hni0i8m77p1fn1arixgmqdw"; depends=[digest jsonlite RCurl]; };
   Rfacebook = derive2 { name="Rfacebook"; version="0.6.15"; sha256="0hp2mbm0hnyasizszvh5x9hv7z2q633zck1a1gvk36nbxb1shx7c"; depends=[httpuv httr rjson]; };
-  Rfast = derive2 { name="Rfast"; version="1.9.0"; sha256="1v43vakp3bqka4k295imyl95f3hkvnpkbwj61gbm37yxamxvx0s4"; depends=[Rcpp RcppArmadillo RcppZiggurat]; };
+  Rfast = derive2 { name="Rfast"; version="1.9.1"; sha256="1kd0ifiw5dd2rl6n5dq9i3bfr0f5r8pxfz8j1sxazf3xsq0zpini"; depends=[Rcpp RcppArmadillo RcppZiggurat]; };
   Rfit = derive2 { name="Rfit"; version="0.23.0"; sha256="1gxxipbh7mskrqwrpk1gf1dn8mp3l1v4hgmzii44bppffnxs7slp"; depends=[]; };
   Rfmtool = derive2 { name="Rfmtool"; version="3.0.0"; sha256="0hjy66b7d9xp4d8fzhs5zizvwlrdrmlmba2wf9fjraz5ysg0vnxv"; depends=[]; };
+  Rfolding = derive2 { name="Rfolding"; version="1.0"; sha256="15lf73zxr1slin9faj9k0z8qkb1g9nb7h080nfv99gsi2ks68ssg"; depends=[]; };
   Rga4gh = derive2 { name="Rga4gh"; version="0.1.1"; sha256="0h5y722blkkwn6ask6vjnhl22v9l6511chdm50ig6xcs5dvjam2m"; depends=[httr jsonlite]; };
   Rgb = derive2 { name="Rgb"; version="1.6.1"; sha256="0qs3dlv4g45dqphqjm23ky3w6rxh8ff2q6b17kvf57skyf1b1yn8"; depends=[]; };
   Rgbp = derive2 { name="Rgbp"; version="1.1.3"; sha256="1340h5rzb4631h6aanrdjl4x4l0h6l5x61qqmckrdf08fw2625lp"; depends=[mnormt sn]; };
@@ -3252,15 +3382,15 @@ in with self; {
   Rgnuplot = derive2 { name="Rgnuplot"; version="1.0.3"; sha256="0mwpq6ibfv014fgdfsh3wf8yy82nzva6cgb3zifn3k9lnr3h2fj7"; depends=[]; };
   RgoogleMaps = derive2 { name="RgoogleMaps"; version="1.4.2"; sha256="112mdm53qx92n2m4ms02sbppckp44l1z19vy99j6gw3jrdprjydl"; depends=[png]; };
   Rgretl = derive2 { name="Rgretl"; version="0.2.2"; sha256="18jyp4bxs96ri1a4ifd52aj0q6kd2dygz8pkajbd9whq7bn5ick6"; depends=[lubridate png xml2]; };
-  Rhpc = derive2 { name="Rhpc"; version="0.18-185"; sha256="1clw2afvqx8bdz8f5fzqs0ybh95afp5n178hspp36awab34fpd9p"; depends=[]; };
-  RhpcBLASctl = derive2 { name="RhpcBLASctl"; version="0.18-185"; sha256="0s950rildshsnfny6kxfw3jls4i50rfmzbg1zma4ilbwswzp7kpq"; depends=[]; };
+  Rhpc = derive2 { name="Rhpc"; version="0.18-204"; sha256="0ja2cx6sa8ihxnq96qhxfp43z5zd45b8jfb0y2rzzklnd7kj9kl1"; depends=[]; };
+  RhpcBLASctl = derive2 { name="RhpcBLASctl"; version="0.18-205"; sha256="1ls2286fvrp1g7p8v4l6axznychh3qndranfpzqz806cm9ml1cdp"; depends=[]; };
   Ricetl = derive2 { name="Ricetl"; version="0.2.5"; sha256="0q87cxzqkkp2bk92q3wnxxsqlkafkd37lp5pki7f87a5vcxlcrak"; depends=[devtools gWidgets gWidgetsRGtk2 plyr readr readxl stringr tidyverse writexl]; };
   RidgeFusion = derive2 { name="RidgeFusion"; version="1.0-3"; sha256="10llmrsfpcqrkcbw7zj44kvfy7ywn9rk49n7zplilz8h94zzcmjv"; depends=[mvtnorm]; };
   Ridit = derive2 { name="Ridit"; version="1.1"; sha256="02cni6hzf1bsns7vi8vklnhc0pfb5vwqhjnnfnjnnaxpzpsbvdfn"; depends=[]; };
   Rilostat = derive2 { name="Rilostat"; version="0.2.1"; sha256="058qz5kn7p8wn3lvw92c11cqpkz9brgf1igmawfkb0lqvj366vyd"; depends=[data_table dplyr DT haven plyr RCurl readr stringr tibble xml2]; };
   Rip46 = derive2 { name="Rip46"; version="1.0.2"; sha256="0wfp6fm5mgmjqjkn0c5hvjd95yn4zcv0s8xc5294qf5jqxp8b1w7"; depends=[Rcpp]; };
   Risk = derive2 { name="Risk"; version="1.0"; sha256="1i42xcc699syj108mvgklwb30wkf9c9jrg5rmd2ypnqk9mnyg2fg"; depends=[]; };
-  RiskPortfolios = derive2 { name="RiskPortfolios"; version="2.1.1"; sha256="1kn0vb4nhm3bxlmk5y2nl5m7a7hdvz3nz0yp8rdigpl6b2dp79w1"; depends=[MASS nloptr quadprog]; };
+  RiskPortfolios = derive2 { name="RiskPortfolios"; version="2.1.2"; sha256="10kgr05npq9gyhglvpzk49hsr44rgscnygkv3b0gz7f6jxqkfj9z"; depends=[MASS nloptr quadprog]; };
   Ritc = derive2 { name="Ritc"; version="1.0.2"; sha256="03smhxjhjfkc9pxhlgg54b6v2jznpmnws8373qpvn9a9ky5bcq2l"; depends=[minpack_lm]; };
   RiverBuilder = derive2 { name="RiverBuilder"; version="0.1.1"; sha256="06cd1m4liv2bsh2sxplq2zl45g9zq8gsgvh14d0zr0pqm8z4dsyw"; depends=[]; };
   Rivivc = derive2 { name="Rivivc"; version="0.9"; sha256="0gl3040pp9nqm4g2ympnx80z64zfnn1hfsxka8ynd2cqhjn3b5i1"; depends=[signal]; };
@@ -3268,11 +3398,13 @@ in with self; {
   RkMetrics = derive2 { name="RkMetrics"; version="1.3"; sha256="1k6vnr1r4h69iznib638z45gd0f8wc4g4h0ji9f0017883g77li1"; depends=[]; };
   Rknots = derive2 { name="Rknots"; version="1.3.2"; sha256="1krhma8hy3l5lbm6d8rxjlj9jw1zrd16h4wy4p1clfa5vlhh3bwi"; depends=[bio3d rgl rSymPy]; };
   Rlab = derive2 { name="Rlab"; version="2.15.1"; sha256="1pb0pj84i1s4ckdmcglqxa8brhjha4y4rfm9x0na15n7d9lzi9ag"; depends=[]; };
-  Rlabkey = derive2 { name="Rlabkey"; version="2.2.1"; sha256="1nsaab7nysld1gdqnpxd9g68vzs363szyinbfn6j2c7ch0vqcrka"; depends=[httr Rcpp rjson]; };
+  Rlabkey = derive2 { name="Rlabkey"; version="2.2.3"; sha256="02srz4726qkc0700fzdk4mk88dl8m84b0ysyrim19jq7yyhx3da0"; depends=[httr jsonlite Rcpp]; };
+  Rlda = derive2 { name="Rlda"; version="0.2.5"; sha256="1wv5n1r7m9jimmv4dcih967hy6lmmgmywvch716rqdpayngp399h"; depends=[coda doParallel foreach gtools Rcpp RcppArmadillo RcppProgress]; };
   Rlibeemd = derive2 { name="Rlibeemd"; version="1.4.0"; sha256="0nnkblrgycvfwn0lb9j92f5wpln69kk54z4irwi35rrfl31f689m"; depends=[Rcpp]; };
   Rlinkedin = derive2 { name="Rlinkedin"; version="0.2"; sha256="15sbiis1d0s466nqk1adjhflb01sb9kn25f4y6sagkdggvyz6b56"; depends=[httpuv httr XML]; };
-  Rlinsolve = derive2 { name="Rlinsolve"; version="0.2.0"; sha256="08ib0jjqicscn4mx5yv25q0x66iycx8jhazvjb47nqvn24mirprp"; depends=[BH bigmemory Matrix Rcpp RcppArmadillo Rdpack]; };
+  Rlinsolve = derive2 { name="Rlinsolve"; version="0.3.0"; sha256="1kvlpfrw4w2dykpdym9sg6h2ghavnm7lwxn6bzqldwg53wlinvxk"; depends=[BH bigmemory Matrix Rcpp RcppArmadillo Rdpack]; };
   Rlof = derive2 { name="Rlof"; version="1.1.1"; sha256="1px6ax2mr2agbhv41akccrjdrvp8a9lmhymp0cn8fjrib0ig8vql"; depends=[doParallel foreach]; };
+  Rmagic = derive2 { name="Rmagic"; version="1.3.0"; sha256="13ai04py36lzppa4jswxvmsmm5j83afv17viiik5yglwjr9rbinj"; depends=[ggplot2 Matrix reticulate]; };
   Rmalschains = derive2 { name="Rmalschains"; version="0.2-4"; sha256="1rzslwwp6ikp3zky2zlqylsd8nmhv13iz2h87kwxfkh3611x28yk"; depends=[Rcpp]; };
   RmarineHeatWaves = derive2 { name="RmarineHeatWaves"; version="0.17.0"; sha256="09lrrxnkkfnbidnmag1czx2xzssdl09348nkc6pqgq6xz36a3mqc"; depends=[dplyr ggplot2 lazyeval lubridate plyr raster rlang tibble tidyr zoo]; };
   RmecabKo = derive2 { name="RmecabKo"; version="0.1.6.2"; sha256="1i08wlfd14wmvwrsvjyhgzxkwzfp4jiwbzymw8m25pvyjxgi7jmy"; depends=[Rcpp stringr]; };
@@ -3280,28 +3412,30 @@ in with self; {
   Rmixmod = derive2 { name="Rmixmod"; version="2.1.2"; sha256="06d8iwnjd9n4rfmcsnqzhi5ai0rxlc1qwij5s7ixkncq8c402a2k"; depends=[Rcpp RcppEigen]; };
   RmixmodCombi = derive2 { name="RmixmodCombi"; version="1.0"; sha256="0cwcyclq143938wby0aj265xyib6gbca1br3x09ijliaj3pjgdqi"; depends=[Rcpp Rmixmod]; };
   Rmosek = derive2 { name="Rmosek"; version="1.2.5.1"; sha256="0zggv699s93i9g98qjs4ci2nprgfkzq45lpzgrbhldsxiflf27gz"; depends=[Matrix]; };
-  Rmpfr = derive2 { name="Rmpfr"; version="0.7-0"; sha256="0jpj3nl76jd6vc2p1xwr8jl62q8ckwsdaxqnk9b20srkq63mfrig"; depends=[gmp]; };
+  Rmpfr = derive2 { name="Rmpfr"; version="0.7-1"; sha256="0172px5ryi7i0gyyin9z2bzif8vnj292gk0s1w5p3c12g9hj2c4v"; depends=[gmp]; };
   Rmpi = derive2 { name="Rmpi"; version="0.6-7"; sha256="1b62gs7w1xqadqd7ir41jnxlcf14gcqfxd0915kn9ckdlsdrh0sw"; depends=[]; };
   RnavGraphImageData = derive2 { name="RnavGraphImageData"; version="0.0.4"; sha256="1k1gnkghap878fck0bbz9mm0fr4cli6lh1d11r0cf47fvl6cc4gr"; depends=[]; };
-  RndTexExams = derive2 { name="RndTexExams"; version="1.4.1"; sha256="1gi96hfd7dkvmbvy6hj25g1l7nwk4yhxkdjx1l3ws3c2zpi27cvj"; depends=[CopyDetect data_table stringi stringr]; };
-  Rnets = derive2 { name="Rnets"; version="0.9.8"; sha256="0lcgapspl7ndrf3gxkrsv1172f2sv2587zaa1q6b950zympcvcj3"; depends=[data_table glasso igraph]; };
-  Rnightlights = derive2 { name="Rnightlights"; version="0.2.1"; sha256="07fd49i0cybnr5d14qf7d9p95frw8qjslrx9y2bwdrx89fvp0gk8"; depends=[cleangeo data_table doSNOW dplyr ff ffbase foreach gdalUtils lubridate R_utils raster readr reshape2 rgdal rgeos rvest rworldmap settings snow sp stringr xml2]; };
+  RndTexExams = derive2 { name="RndTexExams"; version="1.5"; sha256="17azzxcawqqvfdbw1i34n03bj5yla8npyi7xh3pnx22xb7sbwq3x"; depends=[data_table stringi stringr]; };
+  Rnets = derive2 { name="Rnets"; version="1.0.2"; sha256="1mym5zd7717mq6dlnv9b3qry7cfa5ylp3h596dbnnq5b1rhbbfis"; depends=[data_table glasso igraph rlang stringr]; };
+  Rnightlights = derive2 { name="Rnightlights"; version="0.2.3"; sha256="014bw1xln699y0zjaf5xifc2f3yl9zgb0acv7v1qw0q478ka9aak"; depends=[cleangeo data_table doSNOW dplyr ff ffbase foreach lubridate R_utils raster readr reshape2 rgdal rgeos rvest rworldmap settings snow sp stringr xml2]; };
+  Rnmr1D = derive2 { name="Rnmr1D"; version="1.2.1"; sha256="1lwkswg2jr5qwxzcx8g91m63caij85p7yx3kk8w75i8v0j8iac10"; depends=[base64enc doParallel foreach igraph impute MASS MassSpecWavelet Matrix ptw Rcpp signal speaq XML]; };
   Rnumerai = derive2 { name="Rnumerai"; version="0.3"; sha256="0zvfp9zp73gm6pflf9bx1xk1s45xwwvcd56cbris08d2zfj3b3nl"; depends=[httr lubridate]; };
-  RobAStBase = derive2 { name="RobAStBase"; version="1.0.2"; sha256="10bbv9jjh6zznkzrlkx7dahahicab8ld11ah1mar2kz09bdz3kih"; depends=[distr distrEx distrMod RandVar rrcov startupmsg]; };
-  RobAStRDA = derive2 { name="RobAStRDA"; version="1.0.2"; sha256="1lyp2y38jnwv8ggrv9pdzprpf2gs62w1mpzwcqcbrmy7fzjsym0b"; depends=[]; };
-  RobLox = derive2 { name="RobLox"; version="1.0"; sha256="0y193xai0mfwpm6zhxgy21h4yrlqrpvwx84bj4xnr8ql87wznh7q"; depends=[Biobase distr distrMod lattice RandVar RColorBrewer RobAStBase]; };
-  RobLoxBioC = derive2 { name="RobLoxBioC"; version="0.9"; sha256="0ia7vn8x8whyp8kl7mpwd6fd0yv0y3pb1mppnh2329x7xdvcs5j4"; depends=[affy beadarray Biobase BiocGenerics distr lattice RColorBrewer RobLox]; };
+  RobAStBase = derive2 { name="RobAStBase"; version="1.1.0"; sha256="1szxlqgm913fsgi4i7ccnv2rcj81bssl62ahh0g0818dx7zzblxb"; depends=[distr distrEx distrMod RandVar rrcov startupmsg]; };
+  RobAStRDA = derive2 { name="RobAStRDA"; version="1.1.0"; sha256="0hna14757g372ysyyb47529j1q0796k6nzf3lw4ba7ryjcydzw2v"; depends=[]; };
+  RobExtremes = derive2 { name="RobExtremes"; version="1.1.0"; sha256="10b8jbsdnw0zyvx8yjx775mcy64bfqqafy2sw4lfcji1sz3xqjxl"; depends=[actuar distr distrEx distrMod evd RandVar RobAStBase RobAStRDA robustbase ROptEst startupmsg]; };
+  RobLox = derive2 { name="RobLox"; version="1.1.0"; sha256="14k8xkxrw1ji1sbw49mxh6n0rpgqzn68srh5ch6k1i4nc5c6zmr5"; depends=[Biobase distr distrMod lattice RandVar RColorBrewer RobAStBase]; };
+  RobLoxBioC = derive2 { name="RobLoxBioC"; version="1.1.0"; sha256="17yp0jwibf839nwyfaxiz46ckgljssl9gzhhz89a7d12fyfhbb3p"; depends=[affy AnnotationDbi beadarray Biobase BiocGenerics distr distrMod lattice RColorBrewer RobLox]; };
   RobPer = derive2 { name="RobPer"; version="1.2.2"; sha256="0631qfpz61606r50vzn7b3h7arfwxcs8j13q1hg779qx60kwrliy"; depends=[BB quantreg rgenoud robustbase]; };
   RobRSVD = derive2 { name="RobRSVD"; version="1.0"; sha256="07z5fw8j5lq7nyxgkvb9i4iwb5inddz2ib4m2bjx6q4c1ricpqz9"; depends=[]; };
-  RobRex = derive2 { name="RobRex"; version="0.9"; sha256="0ii539mjq462n1lbnyv3whl8b1agvhvlz31wwyz911gb40isl639"; depends=[ROptRegTS]; };
+  RobRex = derive2 { name="RobRex"; version="1.1.0"; sha256="0nszr0dnk8v7raa8sk9zcs4a5xwjv7qzhzsryach777nr9vcdafh"; depends=[distr RandVar RobAStBase ROptRegTS]; };
   Robocoap = derive2 { name="Robocoap"; version="0.1-1"; sha256="0aj6iv85a1zfaknjhrzf6lnf0qn726dvnj4dywg9nii1kkqrkq2w"; depends=[data_table igraph markovchain tm]; };
   RobustAFT = derive2 { name="RobustAFT"; version="1.4-3"; sha256="0x7sn2y9s6nwzlj8476irv893crwag6v4k7w3w589k33kkz5n2hp"; depends=[robustbase survival]; };
   RobustCalibration = derive2 { name="RobustCalibration"; version="0.5.1"; sha256="0wsnvryvrl37acljrda2dm1d8aynqiy66yd2i857m035whixfpqa"; depends=[Rcpp RcppEigen RobustGaSP]; };
-  RobustGaSP = derive2 { name="RobustGaSP"; version="0.5.5"; sha256="0asxhzybpfmz3zzhr32hvcxrdmdsjlqjvxiihrxc8f4w3qwnzb82"; depends=[Rcpp RcppEigen]; };
+  RobustGaSP = derive2 { name="RobustGaSP"; version="0.5.6"; sha256="0lrdsxg1b8pb1blf0pmla18jykjlzflrmgi7g8kccrgv725clifd"; depends=[Rcpp RcppEigen]; };
   RobustRankAggreg = derive2 { name="RobustRankAggreg"; version="1.1"; sha256="1pslqyr1lji1zvcrwyax4zg2s81p1jnhfldz8mdfhsp5y7v8iar3"; depends=[]; };
   RockFab = derive2 { name="RockFab"; version="1.2"; sha256="1b5mhfll5vmqwl4pblmclyx9604vn07jyza02rm0jcsx915ms8sc"; depends=[EBImage rgl]; };
-  Rodam = derive2 { name="Rodam"; version="0.1.3"; sha256="0cfqrvvwkz4marmkxxl2ihi5gdbmr51q2r0sk1lkppa5drdh8cb5"; depends=[RCurl]; };
-  RonFHIR = derive2 { name="RonFHIR"; version="0.2.0"; sha256="1kcbv8ibqh7jb3dpj4p73vd168c6vlwi08s9cshl4w6hqbz1pklg"; depends=[httr jsonlite R6]; };
+  Rodam = derive2 { name="Rodam"; version="0.1.4"; sha256="0vqhzy6gajkqh0pdckyc6cpxm97jb6bmw2vpcd0fi622fh63r0nl"; depends=[RCurl]; };
+  RonFHIR = derive2 { name="RonFHIR"; version="0.3.0"; sha256="1fxcaf1zzaahbywvkvafillyqi41ldfa0jdfn6m8hz0wls7b7mz1"; depends=[httr jsonlite R6 stringr]; };
   Rook = derive2 { name="Rook"; version="1.1-1"; sha256="00s9a0kr9rwxvlq433daxjk4ji8m0w60hjdprf502msw9kxfrx00"; depends=[brew]; };
   RootsExtremaInflections = derive2 { name="RootsExtremaInflections"; version="1.1"; sha256="11wybhw180r4zaqwfs301zwzfzprwwl4hiyhjj78l3mnxgdnmwz7"; depends=[doParallel foreach iterators]; };
   Rothermel = derive2 { name="Rothermel"; version="1.2"; sha256="0zrz2ck3q0vg0wpa4528rjlrfnvlyiy0x1gr5z1aax1by7mdj82s"; depends=[ftsa GA]; };
@@ -3311,20 +3445,23 @@ in with self; {
   RpeakChrom = derive2 { name="RpeakChrom"; version="1.1.0"; sha256="1r8f6knpz83arz2kabizx5yyh1myg0h310qlwh8rmy88cdxi1ps9"; depends=[ggplot2 minpack_lm pracma ptw]; };
   Rphylip = derive2 { name="Rphylip"; version="0.1-23"; sha256="0kpqmik4bhr74ib8yvaavr10z4v4w3li5vibdhz7lvz35jfirg9r"; depends=[ape]; };
   Rphylopars = derive2 { name="Rphylopars"; version="0.2.9"; sha256="19y0j5vh82sa9jigylxhv0s0hgjyhx3xq4blvk55jhpj8v7iyiky"; depends=[ape doBy geiger MASS Matrix mvnmle phylolm phytools Rcpp RcppArmadillo]; };
-  Rpolyhedra = derive2 { name="Rpolyhedra"; version="0.2.5"; sha256="1q24vpbzig7pr7l3nk24vs8qb476l6mcb02v6sjk7md1hrysk34y"; depends=[futile_logger R6 rgl stringr testthat XML]; };
+  Rpoet = derive2 { name="Rpoet"; version="1.0.1"; sha256="1a1km5fbzvqwjgky0n31gpafi75s6afyqn0ivh15ikq40a3adir5"; depends=[httr jsonlite stringr]; };
+  Rpolyhedra = derive2 { name="Rpolyhedra"; version="0.2.8"; sha256="02zgmhcgawkqmc51m9cmkrawx96d2zqinnif13pqy0hibn94aibb"; depends=[digest futile_logger R6 rgl stringr testthat XML]; };
   Rpoppler = derive2 { name="Rpoppler"; version="0.1-0"; sha256="19nvv45ahp0c241p1xzlq0sq5qarqg66jw5f1anhqnfi2hi91hcm"; depends=[]; };
   Rprofet = derive2 { name="Rprofet"; version="2.2.0"; sha256="1s0jkq83vfc9jsggnwm31r366b10n6sri2vzpwxybzpjq3d3w5qr"; depends=[binr ClustOfVar ggplot2 gridExtra plyr sqldf stringr]; };
   Rquake = derive2 { name="Rquake"; version="2.4-0"; sha256="14s2mjq9qqxfvlwmq9126h67y5wr7irlc7945pgv1ab9hl1lgmz8"; depends=[GEOmap MBA minpack_lm rgl RPMG RSEIS]; };
   Rramas = derive2 { name="Rramas"; version="0.1-5"; sha256="0wy0flzp68mikq4v9k5pv6hbzx0w9mpa74dwx79i3iiddn0ylby6"; depends=[diagram]; };
-  Rraven = derive2 { name="Rraven"; version="1.0.3"; sha256="076c7qki4whl6hb5918mdyn3iljgvd31c4c4lydbpwx0x0x1lxqn"; depends=[dplyr kableExtra pbapply vegan warbleR]; };
+  Rraven = derive2 { name="Rraven"; version="1.0.4"; sha256="1hdq0yqjc4s0bga73px8ybghxyn0xpgvjxmyzkx0js430hyyx84r"; depends=[dplyr kableExtra pbapply warbleR]; };
   Rrdrand = derive2 { name="Rrdrand"; version="0.1-16"; sha256="0j9yyvq8r1cgwj3kw1ak6hyazr67f2q0c1m651wdm0wcvm1ajx7f"; depends=[]; };
   Rsampletrees = derive2 { name="Rsampletrees"; version="1.0.2"; sha256="1wz3dp1myjkxzf9l5mfli3dfbkc2fwg70xx7m9cxa06vq0a4w5pv"; depends=[ape haplo_stats Rcpp]; };
   Rsampling = derive2 { name="Rsampling"; version="0.1.1"; sha256="14rp3j7iaii4rc3jkbijmbgvlagxxqjkz3vvfwwpxix43rsi8zsk"; depends=[]; };
   Rserve = derive2 { name="Rserve"; version="1.7-3"; sha256="09rha4p86vak7ss721mwp5bm5ig09xam8zlqv63n9wf36v3kdmpn"; depends=[]; };
   RsimMosaic = derive2 { name="RsimMosaic"; version="1.0.3"; sha256="0jlzrs9xxlpazvq3iw8znk0bd00bzlry7bgxsxq7xl23akizj0ji"; depends=[fields jpeg RANN]; };
-  Rsmlx = derive2 { name="Rsmlx"; version="1.0.1"; sha256="1vzdzidi0i4gcpdmxcsfi6qh66wk20r9cw5s3y8fqd0nkdjlsagx"; depends=[ggplot2 gridExtra MASS RJSONIO]; };
+  Rsmlx = derive2 { name="Rsmlx"; version="1.1.0"; sha256="1ljw8xnzr9asv1vxim86prm8wana6gy72388f273hv36vpr2h3w5"; depends=[ggplot2 gridExtra MASS RJSONIO]; };
   Rsolnp = derive2 { name="Rsolnp"; version="1.16"; sha256="0w7nkj6igr0gi7r7jg950lsx7dj6aipgxi6vbjsf5f5yc9h7fhii"; depends=[truncnorm]; };
   Rsomoclu = derive2 { name="Rsomoclu"; version="1.7.5.1"; sha256="09dsiic9bfy1yq7bwspidn6w21vff3jay8812abydz1l1fz4qv5i"; depends=[kohonen Rcpp]; };
+  Rspc = derive2 { name="Rspc"; version="1.2.2"; sha256="1cnzqpnh009wfs51dc4id9q3giaa8b6dc75b1lhzpwcvw0cxcy4y"; depends=[]; };
+  Rspotify = derive2 { name="Rspotify"; version="0.1.2"; sha256="1q8ajjx5ghlgxgch9gifvhi2gmsi0ph8pygwrb9jrd3ijahlw5k4"; depends=[dplyr httr jsonlite magrittr plyr]; };
   Rssa = derive2 { name="Rssa"; version="1.0"; sha256="0alh0vq3qqzrn1kklqfp52qknasfq6yzk2dprz3g9pyq05qhmhlw"; depends=[forecast lattice svd]; };
   Rsurrogate = derive2 { name="Rsurrogate"; version="2.0"; sha256="1pjyhlxqi8mcbywa7qa1vxgxr5jca0nc9vm1bx53vr231wgnb7gf"; depends=[survival]; };
   Rsymphony = derive2 { name="Rsymphony"; version="0.1-28"; sha256="02x54ygbcd2600prcww1l9pb02skn96rj0jdljpky1228jbib4nx"; depends=[]; };
@@ -3334,30 +3471,32 @@ in with self; {
   Rtsne = derive2 { name="Rtsne"; version="0.13"; sha256="17crbdi80q4g2pwp9v7j3bdaznk96qlrqx01zvj3wwqippizyfqw"; depends=[Rcpp]; };
   Rttf2pt1 = derive2 { name="Rttf2pt1"; version="1.3.7"; sha256="12hf9r3mhjr9sawdvf7qhjf1zph2q64f77i81jwvy7awidbm0kja"; depends=[]; };
   Rtts = derive2 { name="Rtts"; version="0.3.3"; sha256="0jphdpnpbq0d48kzflilxlh6psk282hi1hz3rmnwnd0rx5iyg624"; depends=[RCurl]; };
-  RtutoR = derive2 { name="RtutoR"; version="1.1"; sha256="132vyqkzjzwms9sbw6dmkqqk45si89r0xvy477xl98k14a2q4jlw"; depends=[colourpicker devtools dplyr DT FSelector ggplot2 ggthemes plotly ReporteRs rlang rmarkdown shiny shinyBS shinydashboard shinyjs tidyr]; };
+  RtutoR = derive2 { name="RtutoR"; version="1.2"; sha256="19wmi30b5i6zj673d76gxl6j0k3ppfyl5fqrcs0dwmmadrrvbajq"; depends=[colourpicker devtools dplyr DT FSelector ggplot2 ggthemes officer plotly rlang rmarkdown shiny shinyBS shinydashboard shinyjs tidyr]; };
   Rtwalk = derive2 { name="Rtwalk"; version="1.8.0"; sha256="0zxf66lsfq8by40flv34xzd5yy0wa1ah9li1d0h7f0yh9nbwhxl5"; depends=[]; };
   Ruchardet = derive2 { name="Ruchardet"; version="0.0-3"; sha256="0dgldi6fgp949c3455m9b4q6crqv530jph210xzph41vgw8a2q2v"; depends=[Rcpp]; };
   Runiversal = derive2 { name="Runiversal"; version="1.0.2"; sha256="0667mspsjydmxi848c6wsf14gz72bmdj9b3lilma92b7fhqnv7ai"; depends=[]; };
   Runuran = derive2 { name="Runuran"; version="0.24"; sha256="1528jzpg0m4gya63xjf7ya4x1c96anm6bpzjgsa1vq1a4dz9m4y9"; depends=[]; };
   RunuranGUI = derive2 { name="RunuranGUI"; version="0.3"; sha256="1h2bcc443z8vp4hjf4vss4ds5n6zc6x70kmw13b2431f56jq12fa"; depends=[cairoDevice gWidgets gWidgetsRGtk2 RGtk2 Runuran rvgtest]; };
-  Rvcg = derive2 { name="Rvcg"; version="0.17"; sha256="0ssmi8mqmq82qrw0hzrmfqpwnkxwdlfa6j049r4l3gn28cfqhg1j"; depends=[Rcpp RcppArmadillo RcppEigen]; };
+  Rvcg = derive2 { name="Rvcg"; version="0.18"; sha256="0a9022ps8cddmblgyzzvfyb77n206dvbv0b7fpnfplis4s68zjkf"; depends=[Rcpp RcppArmadillo RcppEigen]; };
   Rvmmin = derive2 { name="Rvmmin"; version="2018-4.17"; sha256="0mhzzwk311wa157l3n4x5x038asvjd81l45g1jclfsjr0smsffym"; depends=[optextras]; };
   Rvoterdistance = derive2 { name="Rvoterdistance"; version="1.1"; sha256="16il36hkq1j6gyl5d8bx5khiiv6fy2m8vkhwiaaiqsliw2sspy4j"; depends=[Rcpp]; };
   Rwave = derive2 { name="Rwave"; version="2.4-8"; sha256="1rmqwyj2r84sii0vfqhyhpi3n1n1zia2ca627fq9ksvwn110nrvh"; depends=[]; };
+  Rwhois = derive2 { name="Rwhois"; version="1.0.3"; sha256="06mx98wi6r265ykkk81hk17yjkym6ar7c2cwp962ijfk3lxwc9l4"; depends=[stringr]; };
   Rwinsteps = derive2 { name="Rwinsteps"; version="1.0-1"; sha256="0kzngkan9vydibnr3xm4pyz4v6kz0r4h19f0ngqpri07fkhdsxzd"; depends=[]; };
   RxCEcolInf = derive2 { name="RxCEcolInf"; version="0.1-3"; sha256="04d6ffl4qs2vjbk0ibvyq17i2l26qnvxr72s6p3f8q4px33rh4kh"; depends=[lattice MASS MCMCpack mvtnorm]; };
-  RxODE = derive2 { name="RxODE"; version="0.7.2-5"; sha256="04irzzv7n7jax1ricdwsmbw0gjn2x4d7cz7hg6y81qhjw4p8qgdi"; depends=[brew cli crayon digest dparser inline magrittr Matrix memoise mvnfast PreciseSums R_utils Rcpp RcppArmadillo rex]; };
+  RxODE = derive2 { name="RxODE"; version="0.8.0-8"; sha256="1kwgy39dl8vpg2g7ldalz0i54lcw8568x1rfnvflqk69zz11rdpj"; depends=[brew cli crayon digest dparser inline magrittr Matrix memoise mvnfast n1qn1 PreciseSums R_utils Rcpp RcppArmadillo rex]; };
   RxnSim = derive2 { name="RxnSim"; version="1.0.3"; sha256="0fi4aic2brfbl6rsnnfwqq7l8ygvlmr98w0v749l3djpgn7sfrig"; depends=[data_table fingerprint rcdk rJava]; };
-  Ryacas = derive2 { name="Ryacas"; version="0.3-1"; sha256="13qvd5gpdrjgzf6isk3529khd02852y3ajmpp5vl8vn9k1jxp86v"; depends=[Rcpp XML]; };
+  Ryacas = derive2 { name="Ryacas"; version="0.3-4"; sha256="05y7q6d69nmkgwy1ycw0kqv7hmif5yqsrly3p3psrfsbfvvjl3fj"; depends=[Rcpp xml2]; };
   S2sls = derive2 { name="S2sls"; version="0.1"; sha256="0qq1rff2cdgrm5rj69jxgrl71i0wmzyn424fdvcg02zdv9ggqhd3"; depends=[spanel]; };
   SACCR = derive2 { name="SACCR"; version="2.1"; sha256="184mw9q25b06zar4ii3na7c4x28ly922d5csfqkw9b07mdp81k3h"; depends=[data_tree jsonlite Trading]; };
   SACOBRA = derive2 { name="SACOBRA"; version="0.7"; sha256="12aj4ghs3i3ks749z0l95ipv8gi33xgggkyjf21zvnzmb1dgphys"; depends=[testit]; };
   SADEG = derive2 { name="SADEG"; version="1.0.0"; sha256="02ilykbdanx1isbd80c43hqpzkckq6dg40y0rklcnck6v96qky3n"; depends=[]; };
   SADISA = derive2 { name="SADISA"; version="1.0"; sha256="0v68k6pwcr2hfsffkcrvpgfwciwir2jsg3q1kvr0ka5iiizpliz3"; depends=[DDD pracma subplex]; };
-  SAFD = derive2 { name="SAFD"; version="1.0-1"; sha256="1h9hw66irq2c1ciz502r5h8h9hx32jwhrp9dwl91qlknlj6s1bxr"; depends=[]; };
+  SAFD = derive2 { name="SAFD"; version="2.0"; sha256="1ing0zkhl7f9pdcddivp3ii2siaxrrh0al7cdh1r92r4b93kfr70"; depends=[]; };
   SALES = derive2 { name="SALES"; version="1.0.0"; sha256="1kjmlwa4v2i7hzm947xby9jr0irsf4c851f7jyqyhqna9c65rx0g"; depends=[Matrix]; };
   SALTSampler = derive2 { name="SALTSampler"; version="1.1.0"; sha256="1lh1w5kcx2sqv5czpfypdbq5mw7pxjbdk0vyg23zzjs26ynbdkn9"; depends=[lattice]; };
   SAM = derive2 { name="SAM"; version="1.0.5"; sha256="1fki43bp6kan6ls2rd6vrp1mcwvz92wzcr7x6sjirbmr03smcypr"; depends=[]; };
+  SAMCpack = derive2 { name="SAMCpack"; version="0.1.1"; sha256="1nnrfc74hd39vnb94lxwfjksmjaz62x0alc2ga46gqyygrrg57g5"; depends=[Rcpp RcppArmadillo RcppXPtrUtils Rdpack]; };
   SAMM = derive2 { name="SAMM"; version="0.0.1"; sha256="1yyqci1c0xk5pqi09v3b7p5y0dwbrg1wlsyscfnw6qxwr707y23j"; depends=[Rcpp RcppArmadillo]; };
   SAMUR = derive2 { name="SAMUR"; version="0.6"; sha256="0iyv7ljjrgakgdmpylcxk3m3xbm2xwc6lbjvl7sk1pmxvpx3hhhc"; depends=[Matching]; };
   SAMURAI = derive2 { name="SAMURAI"; version="1.2.1"; sha256="02fipbjcsbp2b2957x6183z20icv1yly2pd1747nyww9bmpa7ycm"; depends=[metafor]; };
@@ -3370,6 +3509,7 @@ in with self; {
   SASmixed = derive2 { name="SASmixed"; version="1.0-4"; sha256="0491x4a3fwiy26whclrc19alcdxccn40ghpsgwjkn9sxi8vj5wvm"; depends=[]; };
   SASxport = derive2 { name="SASxport"; version="1.6.0"; sha256="1g8sfi61im9i04whybwqq4rl6glisbziqaag1mdfqykxryakjf04"; depends=[Hmisc stringi]; };
   SAVE = derive2 { name="SAVE"; version="1.0"; sha256="1m9rrga8x00hlvn0c1jcz6yz14pdm6h3dq14905mq49sw63c7zll"; depends=[coda DiceKriging]; };
+  SAVER = derive2 { name="SAVER"; version="1.1.1"; sha256="1jkyxnpvbm6zrhf2q9i98gchv786wh83mx0i1vnz2hqa766jk2nj"; depends=[doParallel foreach glmnet iterators Matrix]; };
   SBRect = derive2 { name="SBRect"; version="0.26"; sha256="16g0ciy9q9irypsl8x36i0lavl41j3af13r2si0by8q6wj56pxi4"; depends=[rJava]; };
   SBSA = derive2 { name="SBSA"; version="0.2.3"; sha256="1v23lzzziyjlvgn5p2n1qcq2zv9hsyz2w15lbnfi5wvinxhlg8sc"; depends=[Rcpp RcppArmadillo]; };
   SBSDiff = derive2 { name="SBSDiff"; version="0.1.0"; sha256="0mw1646dmhxw6zz4pq7j0g3mf9bjn72g43sq7m72r8ma8ciqj7r2"; depends=[]; };
@@ -3378,15 +3518,18 @@ in with self; {
   SCCS = derive2 { name="SCCS"; version="1.0"; sha256="0v1ycyx45jlv4y82q0kpcmmfcaaspmkk9nd89k6cfh24n6zf9j6w"; depends=[corpcor dummies fda gnm R_methodsS3 survival]; };
   SCEPtER = derive2 { name="SCEPtER"; version="0.2-1"; sha256="19sphwcsj2z05dvpmz7vgxykzyghkfn79jwqvk6d66daman679mv"; depends=[MASS]; };
   SCEPtERbinary = derive2 { name="SCEPtERbinary"; version="0.1-1"; sha256="0rab0widfndx94dn1nchhs06q0d57vq2n3xy79p130l9rgp9v489"; depends=[MASS SCEPtER]; };
-  SCGLR = derive2 { name="SCGLR"; version="2.0.3"; sha256="03v76nh6ng41hh4lm27r8ipf382sj98dyl9lh4fzl4y6ff1vwzzj"; depends=[expm Formula ggplot2 Matrix pROC scales]; };
+  SCGLR = derive2 { name="SCGLR"; version="3.0"; sha256="10hsvcjgsycap6wkp06snp2zab1ppsp78kyncpbjnm3vp84qm0nz"; depends=[ade4 expm Formula ggplot2 Matrix pROC]; };
   SCI = derive2 { name="SCI"; version="1.0-2"; sha256="1jvzkdv15ifgf6a3zjfzzcgw2y2vg0wp7yhiamiaqp8xkm142w49"; depends=[fitdistrplus lmomco]; };
+  SCINA = derive2 { name="SCINA"; version="1.0.1"; sha256="05sdg2l2jvwl95c0r11l22wjzqjygc4g1y6awmcx7jz0zv8gmnhx"; depends=[gplots MASS]; };
   SCMA = derive2 { name="SCMA"; version="1.2.1"; sha256="17hn3axhmd6wchh1zmgrj026y5yhg6w68d1mif38rrf5cb2wwjnq"; depends=[]; };
   SCORER2 = derive2 { name="SCORER2"; version="0.99.0"; sha256="1a28wga69ip9s98ch2dqgl0qkwa3w6frmaqcvhclc360ik813mxq"; depends=[]; };
   SCORPIUS = derive2 { name="SCORPIUS"; version="1.0.2"; sha256="01rg3c5i5wbdbkssmzr9x8chd9qm3ijdgvdh1cba6ry9y88f6ry5"; depends=[dplyr dynutils ggplot2 magrittr MASS mclust pbapply pheatmap princurve purrr ranger RColorBrewer reshape2 tidyr TSP]; };
+  SCPME = derive2 { name="SCPME"; version="1.0"; sha256="0yhsaaa349wbrswcvp7w8c52wzp7rs3528rs4wqa8b3r3fh983mh"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo RcppProgress]; };
   SCRSELECT = derive2 { name="SCRSELECT"; version="1.3-3"; sha256="118vwnd5gggvdhq7fbs0553l84vh5mhiag41q4svprd7p0pqd9hd"; depends=[mvtnorm]; };
   SCRT = derive2 { name="SCRT"; version="1.2.2"; sha256="1x6bzcgb5blavj4zdw4jam5r8yad3plyfzk31vz9pjv39784k229"; depends=[]; };
   SCVA = derive2 { name="SCVA"; version="1.2.1"; sha256="1ixy4ybw3c9w6q8csjv27r5f9x6988zrbr2a3yybhyw8xmkszc4v"; depends=[]; };
   SCperf = derive2 { name="SCperf"; version="1.1.1"; sha256="1kqi3sv9ds58l20pdcnjrrbf7fin82j73yqj5rbx4kjdw560ylb2"; depends=[]; };
+  SDALGCP = derive2 { name="SDALGCP"; version="0.1.0"; sha256="1ll39ws3hlz07v180g8k55z7ziyrqghndpvd0wp0pc85mw5i6f8s"; depends=[maptools Matrix pbapply pdist plyr PrevMap progress raster sp spatstat splancs]; };
   SDD = derive2 { name="SDD"; version="1.2"; sha256="0wzgm1hgjv5s00bpd7j387qbvn5zvyrrd5fr2rgyll4cw9p4sd33"; depends=[Hmisc rgl rpanel sm tseries]; };
   SDDE = derive2 { name="SDDE"; version="1.0.1"; sha256="14vql1bypn409w9xcx1jdzff6apiagcz2wng3y24h3mk7yjv9bzy"; depends=[doParallel foreach igraph iterators]; };
   SDEFSR = derive2 { name="SDEFSR"; version="0.7.1.0"; sha256="1pknkda7iaq5247557b93kc3cf2ih7b3wpqpkqyfgfay3ci9kg16"; depends=[]; };
@@ -3413,17 +3556,18 @@ in with self; {
   SGL = derive2 { name="SGL"; version="1.1"; sha256="1wc430jqn3li102zpfmyyavfbab7x7ww9p89clxsndyigrrbjdr7"; depends=[]; };
   SGP = derive2 { name="SGP"; version="1.8-0.0"; sha256="02yh6kvc34gn33cbnhc5b86pmir1zbl6s875hangwb3qx7r13dx0"; depends=[Cairo colorspace crayon data_table digest doParallel doRNG equate foreach gridBase gtools iterators jsonlite matrixStats plotly quantreg randomNames RSQLite sn toOrdinal]; };
   SGPdata = derive2 { name="SGPdata"; version="20.0-0.0"; sha256="0fxv7nnxiaq6z9wii9x5qiy0vd2z8jw3gcwl5fj9m29ja7j3900g"; depends=[crayon data_table]; };
-  SHELF = derive2 { name="SHELF"; version="1.3.0"; sha256="0qhkp1ypbimiq9r8yv95bipbmhm7b38ibbk9nmhdckrr6ymd2w35"; depends=[ggExtra ggplot2 MASS shiny tidyr]; };
+  SHELF = derive2 { name="SHELF"; version="1.4.0"; sha256="1lc8f19dvnpv1mg32q3vrg96pwcsapkb30fqis6q58v434v42x89"; depends=[ggExtra ggplot2 gridExtra MASS rmarkdown scales shiny tidyr]; };
   SHIP = derive2 { name="SHIP"; version="1.0.2"; sha256="0b83cclibdz1r7sz968nmca4najwgps9wrdlsh4gxrl7fq40k4ln"; depends=[]; };
-  SI = derive2 { name="SI"; version="0.1.0"; sha256="11ywmyz4mamk30p4m9qvgmba237s1xvabablh91rwq13089x8nxm"; depends=[]; };
+  SI = derive2 { name="SI"; version="0.2.0"; sha256="0i6kpaw5yk39skm77nf56ai25clkparz3l8qx0223jrmdqbf97b7"; depends=[]; };
   SIBER = derive2 { name="SIBER"; version="2.1.3"; sha256="14ab9zid0i400kj924m2y5qgp2iibnpllhqw11rlmdf8j9cr7858"; depends=[dplyr ggplot2 hdrcde magrittr mnormt rjags spatstat_utils tidyr viridis]; };
   SIBERG = derive2 { name="SIBERG"; version="2.0.2"; sha256="0wfx1dpjd09gb736sm2xhrkba26nwnzn5x575h39n2g33jwqqy2r"; depends=[mclust]; };
   SID = derive2 { name="SID"; version="1.0"; sha256="1446zy4rqbw0lpyhnhyd06dzv238dxpdxgmsk34hqv7g3j7q5h1w"; depends=[igraph Matrix pcalg RBGL]; };
-  SIDES = derive2 { name="SIDES"; version="1.11"; sha256="1gmhfj44qdklsdklmg8p35lmvlgla8i881i3iaziblslyscbyw9f"; depends=[doParallel foreach MASS memoise multicool nnet survival]; };
+  SIDES = derive2 { name="SIDES"; version="1.13"; sha256="10759nx2x3gy6zacn37fpr2dgx8j8ap8ic4infljfk0048f9in8w"; depends=[doParallel foreach MASS memoise multicool nnet survival]; };
   SII = derive2 { name="SII"; version="1.0.3"; sha256="1k9mvz6g25qs351c0vx7n5h77kb6k833jrcww14ni59yc9jgvsyg"; depends=[]; };
   SILGGM = derive2 { name="SILGGM"; version="1.0.0"; sha256="1lhmisgg2zbfksl7czz0fqag3732gkjc44n615ipxbdi2pvnc7m0"; depends=[glasso MASS Rcpp reshape]; };
   SIMMS = derive2 { name="SIMMS"; version="1.1.1"; sha256="1wgqz8zgijv5psz5r5zj9k63ikq5sr1dxqxvh48n2041slj6jdap"; depends=[doParallel foreach glmnet MASS survival xtable]; };
   SIN = derive2 { name="SIN"; version="0.6"; sha256="0vq80m3vl8spdnlkwvwy0gk3ziyybqzjp3scnfdcpn942ds7sgg9"; depends=[]; };
+  SIRE = derive2 { name="SIRE"; version="1.0.2"; sha256="1y313wmbpp7yiqg6sc280s97z1xp5zlpiddx42zwzwanikxscikx"; depends=[igraph MASS Matrix matrixcalc numDeriv psych stringr systemfit]; };
   SIRItoGTFS = derive2 { name="SIRItoGTFS"; version="0.2.4"; sha256="1hyhjwkv26fpplzqrdh41r8j91la5j0jidbwnh2vla6s3wf7jg47"; depends=[data_table dplyr easycsv reshape2 rgdal rgeos sp]; };
   SIS = derive2 { name="SIS"; version="0.8-6"; sha256="1749ks5iqlj6lrn0hglifj1iy86dcpqz2pcnf1l798pa05rq8ngd"; depends=[glmnet ncvreg survival]; };
   SISIR = derive2 { name="SISIR"; version="0.1"; sha256="08lw9y38j5qq00m2vcxsac97lg14j4w1y6607vw8isrb3qb5db9z"; depends=[doParallel expm foreach glmnet Matrix RSpectra]; };
@@ -3445,6 +3589,7 @@ in with self; {
   SMNCensReg = derive2 { name="SMNCensReg"; version="3.0"; sha256="06542jacy74mw6ic0i1ml09pn45sll96bya7dqja6bg9yp0m6bvr"; depends=[Matrix PerformanceAnalytics]; };
   SMPracticals = derive2 { name="SMPracticals"; version="1.4-2"; sha256="0apmkmsv2fqmxpgq08n9k9dvcknj74s4cpp0myjcd6kibb7g9slq"; depends=[ellipse MASS nlme survival]; };
   SMR = derive2 { name="SMR"; version="2.0.1"; sha256="0qy56fmismcjklpf29ic2gi1g8ajdjpxsl0akb9cqzyisyf641ia"; depends=[]; };
+  SMUT = derive2 { name="SMUT"; version="1.0"; sha256="1dsmj0h969q9q6qjamr73yfjxbq7hfjmcawra3lynangnc78y1l7"; depends=[MASS Rcpp RcppEigen SKAT]; };
   SMVar = derive2 { name="SMVar"; version="1.3.3"; sha256="17wr4lixy3p32gr4jq02d7zsr88yrbddjsvynzdsdrwbxf4mwqhp"; depends=[]; };
   SNFtool = derive2 { name="SNFtool"; version="2.3.0"; sha256="1yplcwmy7jhsvz19r82ivpxfqav7q88jcf8d0r2k8ll9iqmi1dbc"; depends=[alluvial ExPosition heatmap_plus]; };
   SNPMClust = derive2 { name="SNPMClust"; version="1.3"; sha256="1gad1jfla4qpczh8vpwyss5cckzgpffsyj0d71r8drbspr4i3r90"; depends=[MASS mclust]; };
@@ -3454,7 +3599,6 @@ in with self; {
   SNSequate = derive2 { name="SNSequate"; version="1.3.1"; sha256="1w6yai79996pgg98skfb63kha8rqjzn751nmxg961rc4id1g8ysn"; depends=[emdbook knitr magic plyr progress statmod]; };
   SNscan = derive2 { name="SNscan"; version="1.0"; sha256="1s7dxi7faih0phx5wk2xrrzhvfwicq3h2cg8x2klwbrslin973lz"; depends=[igraph poweRlaw Rmpfr]; };
   SOAR = derive2 { name="SOAR"; version="0.99-11"; sha256="1n38gx5sxpkqfkk4y6vpp6g19b8bs5bisni9wn6311s0csizp86m"; depends=[]; };
-  SOD = derive2 { name="SOD"; version="1.0"; sha256="0f0rh1qsjzxb3zzr440kvl6fnnj7dvc5apdzs5hpf6xrlfg863pk"; depends=[Rcpp]; };
   SODC = derive2 { name="SODC"; version="1.0"; sha256="18s4rcp5dzchvwrzzbfhbs3x91zlg1rymjarxjk5i429mfrn0krx"; depends=[magic MASS ppls psych]; };
   SOFIA = derive2 { name="SOFIA"; version="1.0"; sha256="1jlaggxa2nz2r5yb2xmf0dh5wmxfdk6xwn0l3nwsqh82vyxhp7l9"; depends=[png]; };
   SOIL = derive2 { name="SOIL"; version="1.1"; sha256="0dvfh84xjzald51kmdb546par2rbjdn3nys9y9w7cvafv2lc5yj9"; depends=[brglm2 glmnet MASS ncvreg]; };
@@ -3470,7 +3614,7 @@ in with self; {
   SPAr = derive2 { name="SPAr"; version="0.1"; sha256="068jlsvaxx80ih6n86286m2r75cvy6w0m51vpj4gfclhh38py4p4"; depends=[]; };
   SPAtest = derive2 { name="SPAtest"; version="3.0.0"; sha256="0pq8mbj05x4l3lvdgayxigviirhx6ghf4w5bkpvg9hggkb79ib9y"; depends=[]; };
   SPCALDA = derive2 { name="SPCALDA"; version="1.0"; sha256="1bmp2zz0favmpyp0ap8a2r1mg1nlan7zg5cj75drdnfpqlsn5vgl"; depends=[MASS]; };
-  SPCAvRP = derive2 { name="SPCAvRP"; version="0.2"; sha256="1kqx2mf75h491aj6rm923frpj1yl9c1p666cq3f1d7aa1k9byrzi"; depends=[MASS]; };
+  SPCAvRP = derive2 { name="SPCAvRP"; version="0.3"; sha256="1j4469ny70xsyaf9qa403yg0n63c1as6mkw7a6ql4h7aa53bz5sz"; depends=[MASS]; };
   SPECIES = derive2 { name="SPECIES"; version="1.0"; sha256="0p45llf2wjr467bqr4pbljfank9zz3fm42yl3i0r3jbkxgz0rjf0"; depends=[]; };
   SPEDInstabR = derive2 { name="SPEDInstabR"; version="1.6"; sha256="1py7vw1jfn9pf0xj1syyk7xv5593bilmzrb0p3iy85bks8iijlgx"; depends=[]; };
   SPEI = derive2 { name="SPEI"; version="1.7"; sha256="0lj7d3bbik7q4di5nqc3a1rn94z2y2v9x45r1jjkvgf03frj96qd"; depends=[ggplot2 lmomco]; };
@@ -3484,22 +3628,22 @@ in with self; {
   SPREDA = derive2 { name="SPREDA"; version="1.0"; sha256="1dyqsra899fd1nbk1b7vkw8gs455c6pbcvzw84q9iri77186xqhv"; depends=[nlme survival]; };
   SPRT = derive2 { name="SPRT"; version="1.0"; sha256="1r4pfqh8k5avi8qgpk5x1cy8lmkn341yvjvd2r7wqwb3mr242r0v"; depends=[]; };
   SPSL = derive2 { name="SPSL"; version="0.1-8"; sha256="1jg1nfhz8qml1wwqa4d0w7vkdmbgdy5xlfqx0h2pdw2z8iij3xxc"; depends=[]; };
-  SPUTNIK = derive2 { name="SPUTNIK"; version="1.0.2"; sha256="0hf6g3s17ri1qzl1180s4akyhp98lj6zx5ix1z6rh53gk6dvxb5l"; depends=[autothresholdr ggplot2 imager infotheo reshape SDMTools spatstat viridis viridisLite]; };
+  SPUTNIK = derive2 { name="SPUTNIK"; version="1.1.1"; sha256="1spzl3dhxf0715xibl9ny2v4xgikd8chwdzb3ari1sj82jx1544p"; depends=[e1071 ggplot2 imager infotheo reshape SDMTools spatstat viridis]; };
   SPYvsSPY = derive2 { name="SPYvsSPY"; version="0.1.1"; sha256="1hxc73wwrzqh1r1xr9yd4hy4ma24virg4iv978lfyc9f9n56znp5"; depends=[]; };
   SPmlficmcm = derive2 { name="SPmlficmcm"; version="1.4"; sha256="1acs3560a7h6xx286m40abr9b7i5qihn6wni8flj0biahmsszzx6"; depends=[nleqslv]; };
   SPreFuGED = derive2 { name="SPreFuGED"; version="1.0"; sha256="1cdamkrr0xpc0l2dypd9lgjidrmalfxs0ms7z3wfmf22a8b3y0d2"; depends=[Biobase boot CMA lattice limma lme4 mvtnorm]; };
-  SQB = derive2 { name="SQB"; version="0.2"; sha256="11ccgf6bsnzfmqs92jl1ds09h2352qhjmwb88dvd7qww9admd0ig"; depends=[caret nnet pls rpart]; };
+  SQB = derive2 { name="SQB"; version="0.4"; sha256="12ii8xlwd2r77bj76j7l43898ras25z3plhhv106jaklhpcnk23m"; depends=[caret nnet pls rpart]; };
   SQDA = derive2 { name="SQDA"; version="1.0"; sha256="0nfimk625wb64010r5r7hzr64jfwgc6rbn13wvrpn0jgayji87h6"; depends=[limma mvtnorm PDSCE]; };
   SQN = derive2 { name="SQN"; version="1.0.5"; sha256="0kb8kf6g482zqdp4avwvhs3pqghfny757dbzfl1abaigmvwvx4qj"; depends=[mclust nor1mix]; };
-  SQRL = derive2 { name="SQRL"; version="0.4.0"; sha256="0wl4drma9nznqdbgb95wq2g12iy87g4s3h67n8dpxp7alx5lxy7q"; depends=[RODBC]; };
+  SQRL = derive2 { name="SQRL"; version="0.5.0"; sha256="19mfr45csr23nw7w3li1iyb6hyf94a7w3xlm1rp8dx2ad0vdhzy2"; depends=[RODBC]; };
   SQUAREM = derive2 { name="SQUAREM"; version="2017.10-1"; sha256="10xj26x7qjyvzndnbjl5krr9wabnb9cbrnp3m7xg673g8ddr12cv"; depends=[]; };
   SRCS = derive2 { name="SRCS"; version="1.1"; sha256="13zf3cqs53w68f9zc1fkb9ql84rvzn7g1hbykqrbvss8hjaq8x1r"; depends=[]; };
   SRRS = derive2 { name="SRRS"; version="0.1.1"; sha256="0jv545a97q4pyl89lmhn3y0jhdzyq033mvx144x8lcgx59s7cyi3"; depends=[gtools tcltk2]; };
-  SSBtools = derive2 { name="SSBtools"; version="0.2.1"; sha256="1cqdmvh9gxyx2yciy0j54v84hl8cayifv368ip5y3k6g1cff6488"; depends=[]; };
+  SSBtools = derive2 { name="SSBtools"; version="0.3.0"; sha256="14vs51cq34n2i7gwzs4yr53azhl8c1my293q6x7brvy6pflyj9w6"; depends=[Matrix stringr]; };
   SSDM = derive2 { name="SSDM"; version="0.2.4"; sha256="1zn0iaav58pjzd6ckm28w16pblkjxacj2s1daj0sk0423dhjkf76"; depends=[dismo e1071 earth gbm gplots mgcv nnet randomForest raster rpart SDMTools shiny shinydashboard shinyFiles sp spThin]; };
-  SSDforR = derive2 { name="SSDforR"; version="1.4.18"; sha256="0ffy6gk94q4wlil4jhvc0y2pxim81vza517scly71zwp004381q3"; depends=[MASS psych TSA TTR]; };
+  SSDforR = derive2 { name="SSDforR"; version="1.4.21"; sha256="1k73wy1krs4ngh639ajshi1pap13gl7xcwwi2fa0zzng1kyfwp1v"; depends=[MAd MASS metafor psych TSA TTR]; };
   SSL = derive2 { name="SSL"; version="0.1"; sha256="0fy6svf8xfni72bpsg8a5wr8ly46srhfixk8866lrcsp8pb6mqcd"; depends=[caret e1071 klaR NetPreProc proxy Rcpp xgboost]; };
-  SSLASSO = derive2 { name="SSLASSO"; version="1.1"; sha256="0zkzsdk568y9n9yj160i2vxgl570zvrfagwyafapypq5bz1cyjpi"; depends=[]; };
+  SSLASSO = derive2 { name="SSLASSO"; version="1.2-1"; sha256="0x9nbq9lsnq9g47y50z2ymfbj09l2d1lbii2cfjm76nzk3k5lb39"; depends=[]; };
   SSM = derive2 { name="SSM"; version="1.0.1"; sha256="1h8yyzh5rn5jay70kyzvwirfndi049a5w28qigrjv5rxd7ml84l7"; depends=[]; };
   SSN = derive2 { name="SSN"; version="1.1.13"; sha256="0hk138p1jnlda7d2wxlrf2ipkgliqlip1i5xp67aym979g0b3aaj"; depends=[BH igraph lattice maptools MASS Matrix rgdal rgeos RSQLite sp]; };
   SSRA = derive2 { name="SSRA"; version="0.1-0"; sha256="1d0lg2dz8vf1d63366s5apm0ygrsfxivbrsij907r244zj6i1c37"; depends=[shape stringr]; };
@@ -3514,11 +3658,12 @@ in with self; {
   STEPCAM = derive2 { name="STEPCAM"; version="1.2"; sha256="03crbc7hag8w333j9c7k0q7zy7xmfid4lq773p74r55jmac5xpjf"; depends=[ade4 ape FD geometry gtools MASS vcd]; };
   STI = derive2 { name="STI"; version="0.1"; sha256="1p408y9w2h4ljaq0bsw7vc1xghczjprf558cyg6994m0nv5fh4c4"; depends=[fitdistrplus zoo]; };
   STMedianPolish = derive2 { name="STMedianPolish"; version="0.2"; sha256="0jzgcfhm09cccg2nwbvrmnkah1psbnmg26rc2n7lz26n4b20p3l2"; depends=[gstat maptools nabor reshape2 sp spacetime zoo]; };
-  STPGA = derive2 { name="STPGA"; version="4.0"; sha256="198h2wzhv5lnyqypn7s5lilywby2pq3zdx8vk4qd72bybfwwli2c"; depends=[]; };
+  STMotif = derive2 { name="STMotif"; version="1.0.0"; sha256="13qcayqvf60akk6y3gyhll1cz5mdllfn848i2241pz9appdgdsvy"; depends=[ggplot2 reshape2 scales shiny]; };
+  STPGA = derive2 { name="STPGA"; version="5.2"; sha256="1pllwr6x9nagf7l6w3m021bkhhp8l0l5zlc1jqrvj0irv6r2r7vp"; depends=[AlgDesign emoa scales scatterplot3d]; };
   STRMPS = derive2 { name="STRMPS"; version="0.5.8"; sha256="0vlmhrna0laqzjpbg4sgnscrli3cly2lc5d69n6iqfl213zsfz78"; depends=[Biostrings dplyr IRanges purrr ShortRead stringr tibble tidyr]; };
   STV = derive2 { name="STV"; version="1.0.0"; sha256="034d9qnvgmk97ah7r9w2hvnw39f7mxs2ml6y8dad94p8phl52gfw"; depends=[]; };
   SUE = derive2 { name="SUE"; version="1.0"; sha256="0akv724s84v2zixvwywj1ydfnfvcjnaabv6gm0601nsrh6ij1mi6"; depends=[]; };
-  SUMMER = derive2 { name="SUMMER"; version="0.2.0"; sha256="019yfw76jihk886990pivq1mzbbjbwpn7b4bvmacgbb9v6qrsl3b"; depends=[classInt ggplot2 maptools Matrix pixmap RColorBrewer reshape2 rgeos sp spdep survey survival]; };
+  SUMMER = derive2 { name="SUMMER"; version="0.2.1"; sha256="11qm0spisx8f733d7gjyq8r82zvpv7mjpzxz5xfigyhyzrds18d2"; depends=[ggplot2 maptools Matrix reshape2 spdep survey survival]; };
   SVMMaj = derive2 { name="SVMMaj"; version="0.2-8"; sha256="13d9v1l85md1v6qyfrdc3l36yanw5canskngjr1sh0hmyla182bz"; depends=[dplyr ggplot2 gridExtra kernlab reshape2 scales]; };
   SVMMatch = derive2 { name="SVMMatch"; version="1.1"; sha256="1ykwrhlid4hs466xh3kv6y2qdhgk0jiglg0l3zwk5qlni6p26zc9"; depends=[Rcpp RcppArmadillo]; };
   SWATmodel = derive2 { name="SWATmodel"; version="0.5.9"; sha256="1i48g9nbjfn30ppwyzyz3k181nscv4wx773l8mzfdwhx0nlv4kyj"; depends=[EcoHydRology]; };
@@ -3531,8 +3676,9 @@ in with self; {
   SampleSize4ClinicalTrials = derive2 { name="SampleSize4ClinicalTrials"; version="0.1.0"; sha256="0wx1rfyf753wppjwwb3l1zpmg4b2mwnwjcw45yzav54yxaszy2v3"; depends=[]; };
   SampleSizeMeans = derive2 { name="SampleSizeMeans"; version="1.1"; sha256="1wbc46n8b8wbcxl21blbzs5728dr8r0l8d3jpzbha8pcav0xrh1m"; depends=[]; };
   SampleSizeProportions = derive2 { name="SampleSizeProportions"; version="1.0"; sha256="0mvkvx3nni0l8ys68sq3h2zlbjvksdcdzxqlf03k0ca5bbcmdf9l"; depends=[]; };
-  SamplerCompare = derive2 { name="SamplerCompare"; version="1.2.9"; sha256="1fl9wgbfnkn2ai4swspl88crqpgd9b43hj8rkqkky4b49b8f6bj8"; depends=[mvtnorm]; };
-  SamplingStrata = derive2 { name="SamplingStrata"; version="1.2"; sha256="1qz0pcmp8a9wbq8qx1j2bv1j4makx97v9n4aiklagnmszg2gvggy"; depends=[memoise]; };
+  SamplerCompare = derive2 { name="SamplerCompare"; version="1.3.0"; sha256="1lqnkgbg1naa3crk3rakrf37vvxj6mbilbpxrv0k5iifdmh0b7k1"; depends=[mvtnorm]; };
+  SamplingBigData = derive2 { name="SamplingBigData"; version="1.0.0"; sha256="0khrh7vfqqzpfp16x0ic5ml854wr2fj28cx95s6c0pz91hzlxkns"; depends=[]; };
+  SamplingStrata = derive2 { name="SamplingStrata"; version="1.3"; sha256="0x4qppi3pbxmlcpcp62yxjia3nk3iy2f1rl6wqm0jsjp4rbn2mn9"; depends=[doParallel memoise pbapply]; };
   SanFranBeachWater = derive2 { name="SanFranBeachWater"; version="0.1.0"; sha256="18w2q3hzcrbmagnjyrn1ikwiyjh723mjb2vy0d8p1a6za0460p9w"; depends=[dplyr lubridate magrittr readr rvest tibble xml2]; };
   SanzCircos = derive2 { name="SanzCircos"; version="0.1.0"; sha256="0vw41qldp1gsj4mx2hdd5jfhx9r8pv62i8gvs86p6bvfzy2l1lq4"; depends=[dplyr pbapply purrr randomcoloR readr tibble tidyr]; };
   Scale = derive2 { name="Scale"; version="1.0.4"; sha256="1fa3840kji34qpbw6mxfavk8wq0vq0vx2w6ya71idbkxnvwc3y06"; depends=[Hmisc MASS psych]; };
@@ -3558,39 +3704,37 @@ in with self; {
   SeleMix = derive2 { name="SeleMix"; version="1.0.1"; sha256="1qzy59wbjh8llm66l70xi0p3lv94iawh2h5vwa9sqy2ra5vmpaxk"; depends=[mvtnorm]; };
   Select = derive2 { name="Select"; version="1.4"; sha256="1qx4wwxxwjq31vf645xvwb0y2z5h4v6ca8fcrfpaj5kc33f333v2"; depends=[ade4 FD lattice latticeExtra Rsolnp]; };
   SelvarMix = derive2 { name="SelvarMix"; version="1.2.1"; sha256="02d16ffw5syq0d3yiim9jgrjlz99n956zxp23idpsmq6lb2whq66"; depends=[glasso Rcpp RcppArmadillo Rmixmod]; };
-  SemNetCleaner = derive2 { name="SemNetCleaner"; version="0.1.1"; sha256="0ry6lv33iynh1dy31zag5z36wr1limi8d7bbcjykcbgsbwcbazfj"; depends=[doParallel dplyr foreach ggplot2 magrittr NetworkToolbox plyr purrr qdap RColorBrewer tm]; };
+  SemNetCleaner = derive2 { name="SemNetCleaner"; version="0.9.9"; sha256="1pbp1h3kqgrdwr28psbrnd8i67rbff8hyldry46511zjmc8c7zaq"; depends=[qdap]; };
   Semblance = derive2 { name="Semblance"; version="0.1.0"; sha256="11mpqfpv7i5nqyn9s63bfphj35sh4gx4hjy0gc22sfqn0lmvl132"; depends=[fields]; };
   SemiCompRisks = derive2 { name="SemiCompRisks"; version="3.1"; sha256="0m0primbkpjw4pmmabdgvp5l21aqfifnryga1rp2ng9cm5ncxxqg"; depends=[Formula MASS survival]; };
   SemiMarkov = derive2 { name="SemiMarkov"; version="1.4.4"; sha256="1dj8gj04yfn0lj83b90b4p0ilgphmzcalz95xw7xgvivww8yj1dg"; depends=[MASS numDeriv Rsolnp]; };
   SemiPar = derive2 { name="SemiPar"; version="1.0-4.2"; sha256="0pa3drpvclkw81ji5m1h5arj5c2rh03dnlff97cnnr1v5kvg1i4w"; depends=[cluster MASS nlme]; };
   SemiParSampleSel = derive2 { name="SemiParSampleSel"; version="1.5"; sha256="0apbg8sddz2ab9170wvf7p6cgawvp4w13r97r5q7p3hx2hylb8sw"; depends=[CDVine copula gamlss_dist magic Matrix matrixStats mgcv mvtnorm trust VGAM]; };
   SenSrivastava = derive2 { name="SenSrivastava"; version="2015.6.25"; sha256="0r4p6wafnfww07kq19lfcs96ncfi0qrl8n9ncp441ri9ajwj54qk"; depends=[]; };
-  SensMap = derive2 { name="SensMap"; version="0.6"; sha256="0j52aplvdlwwfswyrij0vv7zsdr015cn5931c6631rlps94gka0w"; depends=[doBy factoextra FactoMineR fields ggdendro ggplot2 glmulti lattice MCMCpack mgcv plotly shiny]; };
   SensMixed = derive2 { name="SensMixed"; version="2.1-0"; sha256="0ykg94amnm9clf8d3naap8fmv9qqc6j1q52wnb83zk7ry44dp7dh"; depends=[doBy ggplot2 Hmisc lme4 MASS plyr reshape2 shiny shinyBS xtable]; };
   SensitivityCaseControl = derive2 { name="SensitivityCaseControl"; version="2.1"; sha256="00jqzqx7g0av9lw13is723gph486gb8ga0wgcmmzpmb24s5nya9z"; depends=[]; };
   SensoMineR = derive2 { name="SensoMineR"; version="1.23"; sha256="0a1s2wrb86a0y2faxj5ax8fa6vfcclgg7bcff4j7jb40ilxnxhn4"; depends=[AlgDesign cluster FactoMineR ggplot2 gtools KernSmooth reshape2]; };
-  SensusR = derive2 { name="SensusR"; version="2.2.0"; sha256="0ahgy6mvlxfdavdarmfmb1ld1pykhbrjgg8mdh5q71b3a75vbp47"; depends=[ggmap ggplot2 jsonlite lubridate openssl plyr R_utils]; };
+  SensusR = derive2 { name="SensusR"; version="2.3.0"; sha256="1gzww80p11zqs90psfx3yl7ncdkq3l55bcs4dxzikrnf5maqa193"; depends=[ggmap ggplot2 jsonlite lubridate openssl plyr R_utils]; };
   SentimentAnalysis = derive2 { name="SentimentAnalysis"; version="1.3-2"; sha256="18vycj9vpb32610sn321sbwdnjldyjm9idjw9spggdzj7gsiwwk3"; depends=[ggplot2 glmnet mgcv moments ngramrr qdapDictionaries SnowballC spikeslab stringdist tm XML]; };
   SeqAlloc = derive2 { name="SeqAlloc"; version="1.0"; sha256="04rhr3gb2p9i35a3x4k8m0lv42ncfqlhx6sf3bq8yihppwrag8x3"; depends=[]; };
   SeqFeatR = derive2 { name="SeqFeatR"; version="0.2.7"; sha256="0qg1zpamcbjia2q8900yzihahb0y7kc48smxipncf8bb68256pyv"; depends=[ape Biostrings calibrate coda ggplot2 phangorn plotrix plyr qvalue R2jags scales tcltk2 widgetTools]; };
   SeqGrapheR = derive2 { name="SeqGrapheR"; version="0.4.8.5"; sha256="041hlf64zbndz76r076pmym4dw4xl3fahryvpvjspw0sdlhmfm8c"; depends=[Biostrings cairoDevice gWidgets gWidgetsRGtk2 igraph rggobi]; };
   SeqKat = derive2 { name="SeqKat"; version="0.0.6"; sha256="0idxyn84rqsg26y6ml218g037qxrx9755ikasyn212qacc36in39"; depends=[doParallel foreach Rcpp]; };
   SeqMADE = derive2 { name="SeqMADE"; version="1.0"; sha256="0nf1xjhk0kpmmzgcxycg3ccxvwq6gydjq7xq6n9m7k7v35v9v3qf"; depends=[MASS]; };
-  SequenceAnalysis = derive2 { name="SequenceAnalysis"; version="1.3"; sha256="0jrpq5ryw7rwkv99w0a5p3r0vj8nbzj6adlcsr84d9ffgxafmhif"; depends=[XML]; };
   Sequential = derive2 { name="Sequential"; version="2.3.2"; sha256="01zvgvdj57js08krskahk1ng3wkv9iblmirslgrmllf4q18zwsdr"; depends=[]; };
   SequentialDesign = derive2 { name="SequentialDesign"; version="1.0"; sha256="1gi37pixwbpy7358id1c75rckr352hs8vjs8sk8qgsr97pkm5xdq"; depends=[Sequential]; };
   SetMethods = derive2 { name="SetMethods"; version="2.3.1"; sha256="0a8d476slmq1dpimmr1l97k2icjwr907rw463c9dqba82a3p8k7g"; depends=[betareg fmsb lattice QCA]; };
   SetRank = derive2 { name="SetRank"; version="1.1.0"; sha256="0p7vwsw05s5hfw1mfh3fbm9nfzsymnxzrdjin7k21dx7asb618wy"; depends=[data_table igraph XML]; };
   SetTest = derive2 { name="SetTest"; version="0.2.0"; sha256="08wc6cbnannmwkncqhpcw6l0y7c1v7z3awk5j7fd853nszfmpbk0"; depends=[]; };
-  Seurat = derive2 { name="Seurat"; version="2.3.3"; sha256="0hfv4balzjjir8gdhrzb92ap36k6imq3igvb1nn0rhb0fq7959cr"; depends=[ape cluster cowplot diffusionMap doSNOW dplyr dtw fitdistrplus foreach fpc ggplot2 ggridges gplots hdf5r Hmisc ica igraph irlba lars lmtest MASS Matrix metap mixtools pbapply plotly png RANN RColorBrewer Rcpp RcppEigen RcppProgress reshape2 reticulate ROCR Rtsne SDMTools tidyr tsne]; };
+  Seurat = derive2 { name="Seurat"; version="2.3.4"; sha256="0l8bv4i9nzz26mirnva10mq6pimibj24vk7vpvfypgn7xk4942hd"; depends=[ape cluster cowplot doSNOW dplyr dtw fitdistrplus foreach fpc ggplot2 ggridges gplots hdf5r Hmisc httr ica igraph irlba lars lmtest MASS Matrix metap mixtools pbapply plotly png RANN RColorBrewer Rcpp RcppEigen RcppProgress reshape2 reticulate ROCR Rtsne SDMTools tidyr tsne]; };
   ShapeChange = derive2 { name="ShapeChange"; version="1.4"; sha256="1ch7avx8mxjk8vrp17inaihmbsv968wflyk1n4fbjvacbl24vn2b"; depends=[coneproj quadprog]; };
   ShapePattern = derive2 { name="ShapePattern"; version="1.0.1"; sha256="18jzs0sq21qhldm86mgx7yb9kl473vv1aljl9hm4560xy5pd5fnb"; depends=[rgdal rgeos sp]; };
   ShapeSelectForest = derive2 { name="ShapeSelectForest"; version="1.3"; sha256="1vvfl1ldrn0l9w38hx0hhszvj5a2dpmfl6ljzw7f0ji181lrx96m"; depends=[coneproj raster rgdal]; };
-  SharpeR = derive2 { name="SharpeR"; version="1.1.0"; sha256="0qhvpwv81jznqfzm7xysm051ckv8ilq7zhsysxc7wripnlj01c4m"; depends=[matrixcalc sadists]; };
+  SharpeR = derive2 { name="SharpeR"; version="1.2.0"; sha256="1gw8wwdqbra4bccbcamqn2j7d853rga1vcvk1p6naih6vbnfqn2s"; depends=[matrixcalc sadists]; };
   ShinyImage = derive2 { name="ShinyImage"; version="0.1.0"; sha256="0nhsaq6i9lr8gqpdkahw3qr0c0cb0qwc0nqpk1ism21l6zg6ahc9"; depends=[EBImage R6 shiny shinyjs]; };
-  ShinyItemAnalysis = derive2 { name="ShinyItemAnalysis"; version="1.2.7"; sha256="0l350q6sy63m09fiamphhkc3hhlncqjn5r2w59gv2hwqnjhwhp2c"; depends=[corrplot CTT data_table deltaPlotR difNLR difR DT ggplot2 gridExtra knitr latticeExtra ltm mirt moments msm nnet plotly psych psychometric reshape2 rmarkdown shiny shinyBS shinyjs stringr WrightMap xtable]; };
+  ShinyItemAnalysis = derive2 { name="ShinyItemAnalysis"; version="1.2.8"; sha256="1ly2jzaziy0jipng3ahk1vm4lfrwqnjpmgrbrzm2k6rgpxrwjjn4"; depends=[corrplot cowplot CTT data_table deltaPlotR difNLR difR DT ggplot2 gridExtra knitr latticeExtra ltm mirt moments msm nnet plotly psych psychometric reshape2 rmarkdown shiny shinyBS shinydashboard shinyjs stringr xtable]; };
   ShinyTester = derive2 { name="ShinyTester"; version="0.1.0"; sha256="0wm4rl2p8ggw6v2chk9b6ygh5y8p8cwzbyra0nr0qr2ka97didp8"; depends=[dplyr purrr readr stringr tidyr visNetwork]; };
-  ShortForm = derive2 { name="ShortForm"; version="0.4.1"; sha256="0c2q3lhcyfn3w4iqknid9gav11nlycy9lma5m49vixksv7rf5kyw"; depends=[ggplot2 lavaan stringr tidyr]; };
+  ShortForm = derive2 { name="ShortForm"; version="0.4.2"; sha256="0lfnafkkwfhqv984mrbd13inck1sdzn7rq1qdklfjwks89dx9ql9"; depends=[ggplot2 lavaan stringr tidyr]; };
   ShrinkCovMat = derive2 { name="ShrinkCovMat"; version="1.2.0"; sha256="1ybd8vm69y50lj2mkmcdyplxb689xfg4spbl129v8hlvhw69mzmy"; depends=[]; };
   SiER = derive2 { name="SiER"; version="0.1.0"; sha256="1ng6vnh30z6z1nvclsdzc9gdbrsrb2kqdqvs6fwm0j1zqlk12x0y"; depends=[]; };
   SiMRiv = derive2 { name="SiMRiv"; version="1.0.3"; sha256="1kzvbzmqcxs0sh23nmjd39zkg68kbnc5djpbjhqhn55qjdfx5776"; depends=[mco raster rgdal sp]; };
@@ -3599,20 +3743,20 @@ in with self; {
   SigTree = derive2 { name="SigTree"; version="1.10.6"; sha256="18gh7azjr979ijc2y4yyskj24ay697rw3j7znc5p4a63s4vpxr9w"; depends=[ape MASS phyext2 phylobase phyloseq RColorBrewer vegan]; };
   SightabilityModel = derive2 { name="SightabilityModel"; version="1.3"; sha256="0rgv5735y07yyv5y9c3flzha97ykn34ysmzy6as1z94hqfr4w746"; depends=[]; };
   SignifReg = derive2 { name="SignifReg"; version="1.0"; sha256="1360892wy0qc6dch3753s4a17l3pcijjmxd34zqvzl9534arlsxd"; depends=[]; };
-  Sim_DiffProc = derive2 { name="Sim.DiffProc"; version="4.0"; sha256="04p6q3g0afyky2ljxf471axik6vwj9l4dv4r487jrykrlhnjrm4z"; depends=[Deriv MASS rgl scatterplot3d]; };
+  Sim_DiffProc = derive2 { name="Sim.DiffProc"; version="4.2"; sha256="0166m9z2iir7qmfmjd3q7sbkdp0znlynqd2d3smb3yykcf312jbs"; depends=[Deriv MASS]; };
   Sim_PLFN = derive2 { name="Sim.PLFN"; version="1.0"; sha256="1jmsydhpfv2z9cr99hfy8cairhkkxpwk4wnz1adixwxazkn7qfah"; depends=[DISTRIB FuzzyNumbers]; };
   SimComp = derive2 { name="SimComp"; version="3.2"; sha256="04rmpxasaa888p6f0rhhpvpqc39fppdkcwbq5sxcslx7bwc9w9z8"; depends=[mratios multcomp mvtnorm]; };
   SimCop = derive2 { name="SimCop"; version="0.7.0"; sha256="1yrdy77a9h14v92c63ng8phi2ig73wy4xjjdb75322grc0bd3jq6"; depends=[quadprog]; };
-  SimCorMultRes = derive2 { name="SimCorMultRes"; version="1.5.0"; sha256="10afb3k4rvsmgfx6m1csb0pvnjba1d896llfh3ksmjzxglmvslgw"; depends=[evd]; };
+  SimCorMultRes = derive2 { name="SimCorMultRes"; version="1.6.0"; sha256="0x0wcc3nqw57xs7jiwc8bzmcwnb69dvpfp7anhx6bx607rcbxfpi"; depends=[evd]; };
   SimCorrMix = derive2 { name="SimCorrMix"; version="0.1.1"; sha256="1mx8xkg1nbh4x4xr6m672zyg00s3lky2sy5mz7dfkw40vz2bwi53"; depends=[BB ggplot2 MASS Matrix mvtnorm nleqslv SimMultiCorrData triangle VGAM]; };
-  SimDesign = derive2 { name="SimDesign"; version="1.10.1"; sha256="1g7nvzvmhkisl5bibigrsiv9s9xpigyib01vf05dhyc97f1vsg18"; depends=[foreach pbapply plyr]; };
+  SimDesign = derive2 { name="SimDesign"; version="1.11"; sha256="0ifn5ma8rh42d75cx2qmv6fbqrw8f6h7kaa1l04648xnplcx7bcz"; depends=[foreach pbapply plyr]; };
   SimEUCartelLaw = derive2 { name="SimEUCartelLaw"; version="1.0.1"; sha256="1wg9sayk55mp3f2qykvfk0cbqh050vh0n1fhpq4fmlxqll87aml9"; depends=[plot3D plot3Drgl rgl]; };
   SimHaz = derive2 { name="SimHaz"; version="0.1"; sha256="04q4xyc1ki1zr3grm3khfg0kbykjy3j9qpg332l7pxp4j3wa3aw3"; depends=[survival]; };
-  SimInf = derive2 { name="SimInf"; version="6.0.0"; sha256="1bbmyqh367g4c6a2mnd78y08svaqyr96sj61wg1zn3n06892ilpg"; depends=[Matrix]; };
+  SimInf = derive2 { name="SimInf"; version="6.1.0"; sha256="1y9vk71k7rw7vk91nb25rf1vgnf6cqxw7b9lklrs41x6lk9ar0ps"; depends=[Matrix]; };
   SimMultiCorrData = derive2 { name="SimMultiCorrData"; version="0.2.2"; sha256="0brszbqxf40y65xp96c5hp7hhvz3gv0xlg93r5ik8qdh0bn0y1sw"; depends=[BB GenOrd ggplot2 Matrix nleqslv psych triangle VGAM]; };
-  SimPhe = derive2 { name="SimPhe"; version="0.1.1"; sha256="00qqqsf7na5c9nslnfpbyr2ysf7d7bi6vnpfiy761nhg8vgf2vjv"; depends=[]; };
+  SimPhe = derive2 { name="SimPhe"; version="0.2.0"; sha256="01kzypahw41jk8s2c92h0k9w32yaicis07wb6k8qlqcmv0zj8xry"; depends=[]; };
   SimRAD = derive2 { name="SimRAD"; version="0.96"; sha256="0ivvd3k04v1akbblxcjhlyc315z3ig7wjs0g3b37lvlfp54ppbrg"; depends=[Biostrings ShortRead zlibbioc]; };
-  SimRVPedigree = derive2 { name="SimRVPedigree"; version="0.1.0"; sha256="1krdz4gxnqxj3wabc5hn7ayfqdfmpgg66zj09b3jnngcdaxkjlwb"; depends=[dplyr kinship2]; };
+  SimRVPedigree = derive2 { name="SimRVPedigree"; version="0.3.0"; sha256="1ppms2cirdhm8lsfl74mfc1f9zwc7lin6r5xs649czqlj63yzk4i"; depends=[dplyr kinship2]; };
   SimReg = derive2 { name="SimReg"; version="3.0"; sha256="188q399xcrvjw7y7lf3hfbb7x0m0hc4zaf9i1w2c4xzswmvljd8r"; depends=[ontologyIndex ontologyPlot ontologySimilarity Rcpp]; };
   SimRepeat = derive2 { name="SimRepeat"; version="0.1.0"; sha256="1vq82wlnas0jkl8hlj7dnnbn4y1a56lmszs4w7wya7acri92gkqm"; depends=[BB ggplot2 MASS Matrix nleqslv SimCorrMix SimMultiCorrData triangle VGAM]; };
   SimSCRPiecewise = derive2 { name="SimSCRPiecewise"; version="0.1.1"; sha256="0mhlx9m5db8a40wf275qh59345676m8bpjjmyx1v22f6m9p3b2n4"; depends=[]; };
@@ -3627,6 +3771,8 @@ in with self; {
   Simpsons = derive2 { name="Simpsons"; version="0.1.0"; sha256="1pm6wga1yxc35zgz72plzq23d3l4bbzfdvhszdxmkn1pkk64h8ms"; depends=[mclust]; };
   SimuChemPC = derive2 { name="SimuChemPC"; version="1.3"; sha256="06sxknaykikcgbw7qbbw1risg0sbaisb68vhfd7cl6sg0327dznk"; depends=[rcdk]; };
   SinIW = derive2 { name="SinIW"; version="0.2"; sha256="1z7rcjy0i09a9hjpjj1x8i46lv042l20lvb6b0pnsky2sx3v78pd"; depends=[fdrtool pracma]; };
+  SingleCaseES = derive2 { name="SingleCaseES"; version="0.4.0"; sha256="0n2wybp06jx36095aw6073rdr2x1ahrnar28sqla2l2jd28ml72x"; depends=[dplyr magrittr purrr rlang tidyr tidyselect]; };
+  SitesInterest = derive2 { name="SitesInterest"; version="1.0"; sha256="06l6i6jnzwj683cvd9a9dg4nlb1wy1v3wb561y97a25bikm3mfy6"; depends=[plotrix]; };
   SixSigma = derive2 { name="SixSigma"; version="0.9-52"; sha256="07s4an2az2pgqhq9c08jrf6b95nrs1b3r1092d53n1ps8wbdmbln"; depends=[e1071 ggplot2 lattice nortest qcc reshape2 scales testthat xtable]; };
   SizeEstimation = derive2 { name="SizeEstimation"; version="1.1.1"; sha256="1rz57y76hzp880511kzm7nhxf201n0dr7ccip6slrjz784dl7s27"; depends=[MCMCpack msm]; };
   SkewHyperbolic = derive2 { name="SkewHyperbolic"; version="0.3-2"; sha256="10vilra5z884xinqkvk7ryi4nsq5zxlyn5qh23lsajba3b3qwhaw"; depends=[DistributionUtils GeneralizedHyperbolic RUnit]; };
@@ -3635,15 +3781,16 @@ in with self; {
   SkyWatchr = derive2 { name="SkyWatchr"; version="0.8-2"; sha256="0if44d79j2hlxdccn3jd7lrfbhrr09rfhfgds132syxprwkcb2mr"; depends=[htmlTable httr sp]; };
   Sleuth2 = derive2 { name="Sleuth2"; version="2.0-4"; sha256="18mh1svmb96hw3rjmgxlwzs7kdcvjkxf4zm8k4w0sxz94ks062i7"; depends=[]; };
   Sleuth3 = derive2 { name="Sleuth3"; version="1.0-2"; sha256="0b4g7j8a204wyvh0q9n1l4zrl9rk7ibyfijd49mjjdyg9zz4kbna"; depends=[]; };
-  SmartEDA = derive2 { name="SmartEDA"; version="0.2.0"; sha256="0k89nvq074c2skjysw0n2cr410ki8f2p2fvzmwy779sgkbabc497"; depends=[data_table ggplot2 gridExtra ISLR rmarkdown scales stringi]; };
+  SmallCountRounding = derive2 { name="SmallCountRounding"; version="0.2"; sha256="1xfx0cqrl7yz0a1alxk00ii2q63dawnlkg1s734sji6l6c0dvchy"; depends=[Matrix SSBtools]; };
+  SmartEDA = derive2 { name="SmartEDA"; version="0.3.0"; sha256="0adx637nmajmjl9j1rbdmx3gl5v6mgd2m3jdxx3wa4z12pjbrdac"; depends=[data_table GGally ggplot2 gridExtra ISLR rmarkdown sampling scales stringi]; };
   SmartSVA = derive2 { name="SmartSVA"; version="0.1.3"; sha256="10a8s2znsg8ywqkq9fsxiyqfsprrx33pqissazp2vmabs11mg4np"; depends=[isva Rcpp RcppEigen RSpectra sva]; };
   SmartSifter = derive2 { name="SmartSifter"; version="0.1.0"; sha256="16rzma87k27qg6qy39mzywdj8pzkp7r9q7bpqyikazp3fk2nmfri"; depends=[mvtnorm rootSolve]; };
   SmarterPoland = derive2 { name="SmarterPoland"; version="1.7"; sha256="03vs6hcd96va9kfhl2yq77alnm33j1dxy79kgrx17hlijsy65qqv"; depends=[ggplot2 htmltools httr jsonlite rjson]; };
   Smisc = derive2 { name="Smisc"; version="0.3.9"; sha256="12chfjjg588a55q3yg0i507vl68hhk7zzprj849smq9azaxidn4k"; depends=[doParallel plyr]; };
   SmithWilsonYieldCurve = derive2 { name="SmithWilsonYieldCurve"; version="1.0.1"; sha256="0qvhd1dn2wm9gzyp6k7iq057xqpkngkb4cfmvmjqmf0vhysp371w"; depends=[]; };
   SmoothHazard = derive2 { name="SmoothHazard"; version="1.4.1"; sha256="147wjxgxnijpmixrfyl8kd4scz2w1xb8dcwvpr60zg32nv22g17r"; depends=[lava mvtnorm prodlim]; };
-  SmoothWin = derive2 { name="SmoothWin"; version="1.0.0"; sha256="19yd3gnanv8q8ab0x8ds61rznm5w71dri0liknylikiqgbqwxrcn"; depends=[msgps]; };
-  SnakeCharmR = derive2 { name="SnakeCharmR"; version="1.0.7"; sha256="1i8g0p51mp0j46434zzhmijwwk1v6my7rdw8j41ac3b4as3g0c73"; depends=[jsonlite Rcpp stringr]; };
+  SmoothWin = derive2 { name="SmoothWin"; version="2.0.0"; sha256="1mkmrh9f08sgvx4zvca2q09lrwvy24bcgi72bhy1dzdc4fbpg2s5"; depends=[nlme]; };
+  SnakeCharmR = derive2 { name="SnakeCharmR"; version="1.0.7.1"; sha256="12kzjrxjrgph95m949z6ri97nn97gh6avzqibw1jn76rsnjrhi6r"; depends=[jsonlite Rcpp stringr]; };
   SnakesAndLaddersAnalysis = derive2 { name="SnakesAndLaddersAnalysis"; version="2.1.0"; sha256="0h3664h6d32q201qfyv9y2gg4fhg3azdpwpmx4qfbc10hsc1ghl9"; depends=[]; };
   SnowballC = derive2 { name="SnowballC"; version="0.5.1"; sha256="0kbg33hy6m2hv9jspyx6naqmk2q6h2zmvvczjmkwqvlhzlj0c5s4"; depends=[]; };
   SoDA = derive2 { name="SoDA"; version="1.0-6"; sha256="0sh2dan4ga2k14rirnkvgzsvbksx1k4ika5gkf5cy247rjkqnpj0"; depends=[]; };
@@ -3655,25 +3802,27 @@ in with self; {
   SoftClustering = derive2 { name="SoftClustering"; version="1.1502"; sha256="1pgg9mjpfw55m3ny726vx5wl8gwsdkrxv8xzgmy3aqdlwzhh4bwz"; depends=[]; };
   SoilHyP = derive2 { name="SoilHyP"; version="0.1.1"; sha256="10lwfmhiavfyzypdb2rpc0rjsphy84vzg8mrdkncircss45cbvyp"; depends=[]; };
   SoilR = derive2 { name="SoilR"; version="1.1-23"; sha256="1cryypgnbck5hvkc2izrd8r10q2b97f2p1s46x4dk8p099gck5wg"; depends=[deSolve RUnit]; };
-  SolveLS = derive2 { name="SolveLS"; version="1.0"; sha256="0yb2sx3wjhccmkq8p3jj5pp8dgsdfvv4hr88km5yajl950wkbizp"; depends=[Matrix Rcpp RcppArmadillo Rdpack]; };
   SorptionAnalysis = derive2 { name="SorptionAnalysis"; version="0.1.0"; sha256="0drns1ajcga5z56hcgjxld1riwjn7vli8k1ma1xqifpy1qwy7ci6"; depends=[]; };
   SortableHTMLTables = derive2 { name="SortableHTMLTables"; version="0.1-3"; sha256="1jgrqsm0cj8qlk0s4qn3b83w96mgpp5gmhgcg9q2glc72v8c4ljh"; depends=[brew testthat]; };
   SoundexBR = derive2 { name="SoundexBR"; version="1.2"; sha256="0chc332v3wcz30v70yvdxhvcfdmvf4fj193cn00gl899xfxal89p"; depends=[]; };
   SourceSet = derive2 { name="SourceSet"; version="0.1.1"; sha256="1326p28mngvi77b98n62cg6rln1qscyxz0616h7apc23ppdl7ybz"; depends=[graph gRbase gtools igraph plyr progress reshape2 scales]; };
-  SoyNAM = derive2 { name="SoyNAM"; version="1.4"; sha256="0b48nm3xgvzws9222fmq07chqx4yllz4qjgzxg156s0waxfrjjfi"; depends=[lme4 NAM reshape2]; };
+  SoyNAM = derive2 { name="SoyNAM"; version="1.5"; sha256="12qji7bdj0frf6ngwg1wybb29yxpv6cbyhiq2gayafdl48sm8his"; depends=[lme4 NAM reshape2]; };
   SpATS = derive2 { name="SpATS"; version="1.0-8"; sha256="0j7yllnw9r8zhlh6jpkp5nsmzj0z3rzq0w6rkc36vp88a0giv15n"; depends=[data_table fields plot3Drgl spam]; };
+  SpNMF = derive2 { name="SpNMF"; version="0.1.1"; sha256="1xybxx47i3ww5d7chwl38xc48fbsclgyxcki8h85c6dkm49dxy8i"; depends=[NMF]; };
+  SpNetPrep = derive2 { name="SpNetPrep"; version="1.1"; sha256="1y3j7mwjxv69lrgqvi8kxvhlmdyr8v7gbg17741008xb32kgma8h"; depends=[leaflet maptools prodlim raster rgdal shiny shinythemes sp spatstat]; };
   SpaCCr = derive2 { name="SpaCCr"; version="0.1.0"; sha256="0qm1fr6nnax3i1i77fi73x1z8db557avh6kivs0nskb1dfj8ri4m"; depends=[abind dplyr ggplot2 Rcpp RcppArmadillo tidyr]; };
   SpaDES = derive2 { name="SpaDES"; version="2.0.2"; sha256="14l6rhaid4022c9gza6iy7kb6zr1844v16kn3hlgynf3zqv0mkr4"; depends=[quickPlot reproducible SpaDES_addins SpaDES_core SpaDES_tools]; };
   SpaDES_addins = derive2 { name="SpaDES.addins"; version="0.1.1"; sha256="0sipgq00lacy7yk81crr8h7xfm4vs4h66w6rqsll8i7di19g13cj"; depends=[devtools magrittr miniUI rstudioapi shiny SpaDES_core stringi]; };
-  SpaDES_core = derive2 { name="SpaDES.core"; version="0.1.1"; sha256="12w2yr4q440n68p4gcj82h7gzjd240khfxjwxpngfbhbgp7rmv4b"; depends=[crayon data_table DEoptim DiagrammeR digest dplyr fastdigest fpCompare httr igraph lubridate quickPlot R_utils raster RCurl reproducible sp stringi]; };
-  SpaDES_tools = derive2 { name="SpaDES.tools"; version="0.2.0"; sha256="1xqydiswjg8dn57d0lmfll1ix6ca7w969swpyhwrqkh7x17q9bvg"; depends=[bit checkmate CircStats data_table fastmatch ff ffbase fpCompare magrittr quickPlot RandomFields raster Rcpp reproducible sp velox]; };
+  SpaDES_core = derive2 { name="SpaDES.core"; version="0.2.2"; sha256="17p4fvyax5zxvw1h79n7ybx5vhq1gawyk0dib3y055kr1vv95h0s"; depends=[codetools crayon data_table DEoptim DiagrammeR dplyr fastdigest fpCompare googledrive httr igraph lubridate quickPlot R_utils raster RCurl reproducible stringi]; };
+  SpaDES_tools = derive2 { name="SpaDES.tools"; version="0.3.0"; sha256="110c8y6v6pig6bpzn82kzaxr4c2jlq83v1a9ml1n9af591mpw4gp"; depends=[bit checkmate CircStats data_table fastmatch ff ffbase fpCompare magrittr quickPlot RandomFields raster Rcpp reproducible sp velox]; };
   SpaTimeClus = derive2 { name="SpaTimeClus"; version="1.0"; sha256="1l204b8yd11pxwcb026xy39f4lps4sqk6mml8cybnjch8clk9djc"; depends=[Rcpp RcppArmadillo]; };
   SpadeR = derive2 { name="SpadeR"; version="0.1.1"; sha256="0iy2rkq4vvps1a73kqq37zpsyl4pvl3vh07dwvpfhvp7f8nxbx99"; depends=[]; };
   SparseDC = derive2 { name="SparseDC"; version="0.1.17"; sha256="0gsfj8631s67a0r9qjjll4rbb57nzk5fwm5bbggvf0027b9hk0pp"; depends=[]; };
   SparseFactorAnalysis = derive2 { name="SparseFactorAnalysis"; version="1.0"; sha256="0lgfvydxb86r5hks1mf0p0yhgpx8s8fbkc3q6dimc728rw26qcv5"; depends=[directlabels ggplot2 MASS proto Rcpp RcppArmadillo truncnorm VGAM]; };
   SparseGrid = derive2 { name="SparseGrid"; version="0.8.2"; sha256="057xbj2bhjm9i32kn39iscnqqdsvsmq0b8c92l8hnf9avf1sx10x"; depends=[]; };
-  SparseLearner = derive2 { name="SparseLearner"; version="1.0-2"; sha256="1qxycxpch2m2yyk97210gdzsizhlinc0hkhk5ak00rdgkrsxxc0k"; depends=[glmnet lqa mlbench qgraph RankAggreg SIS SiZer]; };
+  SparseLPM = derive2 { name="SparseLPM"; version="1.0"; sha256="1mpjf7yk2haa8hch315davb6nrhxhy0w2vgw2x4111rn4bskhd8m"; depends=[gtools Rcpp RcppArmadillo vegan]; };
   SparseM = derive2 { name="SparseM"; version="1.77"; sha256="0p6ljma2h12cq1xmy0cxb48ih8dhxxbnwkqzvx3cckxf2kprycm9"; depends=[]; };
+  SparseMDC = derive2 { name="SparseMDC"; version="0.99.5"; sha256="0d3ashk3l9fjdbiyjhaxc05ayyscissrg7lwhnh46hv3fydbixlj"; depends=[doParallel doRNG foreach]; };
   SparseTSCGM = derive2 { name="SparseTSCGM"; version="2.5"; sha256="004hbk5fdd5b5hdvg25wl1908pfya26brm2pz00zypfvis99lps3"; depends=[abind flare glasso longitudinal MASS mvtnorm network QUIC]; };
   SpatEntropy = derive2 { name="SpatEntropy"; version="0.1.0"; sha256="0nk399anjhsdki9cra650ynk6sa0366495470sawxcfs3vxmlzrl"; depends=[spatstat]; };
   SpatMCA = derive2 { name="SpatMCA"; version="1.0.1.0"; sha256="1sjrm1md4lmhyq1yw3np4llkgdskw3mk667jr0k3isjmr6z88gxa"; depends=[fields MASS Rcpp RcppArmadillo RcppParallel]; };
@@ -3688,17 +3837,20 @@ in with self; {
   SpatialPack = derive2 { name="SpatialPack"; version="0.3"; sha256="12mx62drwqx351x4jfvv87rxr28ggz7iw83firkzr5xwfwfgr02c"; depends=[]; };
   SpatialPosition = derive2 { name="SpatialPosition"; version="1.2.0"; sha256="140fg3bjj7383nrdbgnk9lccj4yjq65rkprqpmf4q0mwbc89mmqc"; depends=[raster rgdal rgeos sp]; };
   SpatialTools = derive2 { name="SpatialTools"; version="1.0.4"; sha256="0jgbrzsx2klvihv65y1ycqyr8awp5kqqz4qwfyfibx3b56lzna1q"; depends=[Rcpp RcppArmadillo spBayes]; };
+  SpatialVS = derive2 { name="SpatialVS"; version="1.0"; sha256="0f0ps462g3v1h50fa9sznzvjdasb4lcs57ccsc02l39jlkwp7z56"; depends=[fields MASS nlme]; };
   SpatialVx = derive2 { name="SpatialVx"; version="0.6-3"; sha256="0shh8b4l42h93ja6mshj2bwfz1g5j6wjwf3n3ql4yx7kc0n1y7sv"; depends=[boot CircStats distillery fastcluster fields maps smatr smoothie spatstat turboEM waveslim]; };
   SpatioTemporal = derive2 { name="SpatioTemporal"; version="1.1.9"; sha256="1k674xb6q64w9izjb2mdippp6sfjnlqlq6ynmzmyi8m3pv3spga6"; depends=[MASS Matrix]; };
   Spbsampling = derive2 { name="Spbsampling"; version="1.0.0"; sha256="19ci3199hwqzh82phxr4m4d1n7y3vpn5338m20qisr7plwqv7wp5"; depends=[Rcpp Rdpack]; };
+  SpecDetec = derive2 { name="SpecDetec"; version="1.0.0"; sha256="1940pl4vm1kzszq0hwhqkwbk1xmrimjdf03acpdndy089mdg9avc"; depends=[abind]; };
   SpecHelpers = derive2 { name="SpecHelpers"; version="0.2.7"; sha256="1v3v717ah2fkx9225860dwppdf5m6nnnaaa4iwmj30rn17nqr4jh"; depends=[gsubfn splancs]; };
   SpeciesMix = derive2 { name="SpeciesMix"; version="0.3.4"; sha256="0d6hfmzxqcvg4fcvpsfxx36k95fwkws4rlylrixikndj2fncgwb5"; depends=[MASS numDeriv]; };
   SpecsVerification = derive2 { name="SpecsVerification"; version="0.5-2"; sha256="0dnya9mzkf48clp51jrnkz6lc4fps38nn3lap7n2wcp3dvbvdycg"; depends=[Rcpp RcppArmadillo]; };
   SpectralMap = derive2 { name="SpectralMap"; version="1.0"; sha256="15689023k9jzg3s7bx5m97dmn00z876amqhxsxksy8n8wf09wr57"; depends=[fields scatterplot3d]; };
   SphericalCubature = derive2 { name="SphericalCubature"; version="1.4"; sha256="14xrxhmhavz82rcixnyharnbrvdzs6rh7gbxihaxh431d90w2q3k"; depends=[abind cubature mvmesh SimplicialCubature]; };
   SphericalK = derive2 { name="SphericalK"; version="1.2"; sha256="18py4ylm10s75pihjvcy7w948379zy9l9azriw7g7pyp7px29wda"; depends=[]; };
+  SplitSoftening = derive2 { name="SplitSoftening"; version="1.0-0"; sha256="1nng2rbldpxflnn7kqdp4r334lcjyznwbc50sfrd4rxyhcmmy36n"; depends=[]; };
   SportsAnalytics = derive2 { name="SportsAnalytics"; version="0.2"; sha256="1vb080ak1mfvr6d0q9i3r8hd547ba80bavjdcri0gclqqcjf1ach"; depends=[]; };
-  SqlRender = derive2 { name="SqlRender"; version="1.5.0"; sha256="0g9x7dkks9jcgfqz1zzkvgzgjlj2bvlbnpk1k6zc2lplxp7hgzf7"; depends=[rJava]; };
+  SqlRender = derive2 { name="SqlRender"; version="1.5.2"; sha256="07x9jrrr7j6vi8blnl0byry0yh11fnf0zy9137zc4nmnp240fawv"; depends=[rJava]; };
   Sstack = derive2 { name="Sstack"; version="1.0.1"; sha256="137vsas2kw3l37c141g51sgx0j6z8ys6hbxjmsdymz1fxsjr4adg"; depends=[doParallel dplyr foreach randomForest]; };
   StAMPP = derive2 { name="StAMPP"; version="1.5.1"; sha256="0yyssscx3l4csban66gb4q35h37gf7pqvvycfsy56n96pnnlrgkf"; depends=[adegenet doParallel foreach pegas]; };
   StMoMo = derive2 { name="StMoMo"; version="0.4.1"; sha256="1c4v2gjipq1y4crc6bqvz2x5c02bl10mh9jacg8dqb2dffsh5y44"; depends=[fanplot fields forecast gnm MASS RColorBrewer reshape2 rootSolve]; };
@@ -3708,7 +3860,7 @@ in with self; {
   Stack = derive2 { name="Stack"; version="2.0-1"; sha256="09fgfhw9grxnpl5yg05p9gvlz38iw4prns1jn14nj3qx01k5rnxb"; depends=[bit ff ffbase plyr stringr]; };
   StagedChoiceSplineMix = derive2 { name="StagedChoiceSplineMix"; version="1.0.0"; sha256="1008gm6zv5k8lpv0qg42qjriajmx0n4kshjh76mvx91dpi788ivh"; depends=[plyr]; };
   StakeholderAnalysis = derive2 { name="StakeholderAnalysis"; version="1.2"; sha256="164mah8h8izxaqp8hc43l6mlnf95pydkcx2laqrlqr9b0bybadxb"; depends=[]; };
-  StanHeaders = derive2 { name="StanHeaders"; version="2.17.2"; sha256="11fcc59z63rkgk6pp5vhb5avjlbhbjs2v5mn496ai9jms4223ivc"; depends=[]; };
+  StanHeaders = derive2 { name="StanHeaders"; version="2.18.0"; sha256="1h2g4j3ja71szvmwxp5c38s64zf1iamxpjlhkbc40jvw9fhbfc15"; depends=[]; };
   StandardizeText = derive2 { name="StandardizeText"; version="1.0"; sha256="0s267k2b109pcdiyd26gm4ag5afikrnnb55d3cs6g2fvzp744hfp"; depends=[]; };
   Stat2Data = derive2 { name="Stat2Data"; version="1.6"; sha256="0pk68ffc6ffpddfpf9wi8ch39h6k3r80kldld3z5pnql18rc8nvx"; depends=[]; };
   StatCharrms = derive2 { name="StatCharrms"; version="0.90.91"; sha256="0gjxp6jz8j2kz87g17gax1pyrd498vcswrmv9az5dj52dvyxbwxf"; depends=[cairoDevice car clinfun coxme gWidgets gWidgetsRGtk2 lattice multcomp nlme R2HTML RGtk2 RSCABS survival]; };
@@ -3719,12 +3871,12 @@ in with self; {
   StatPerMeCo = derive2 { name="StatPerMeCo"; version="0.1.0"; sha256="1nm6brlj6h7jx8nqagrfk294ay3pfmkiizabwlb87qfnsfwchpk3"; depends=[]; };
   StatRank = derive2 { name="StatRank"; version="0.0.6"; sha256="14d8v3bp8vgksi6q0mxajwd9s8zi6lns3qwi1vcr5xp9rjp4n6iy"; depends=[ggplot2 plyr truncdist]; };
   SteinIV = derive2 { name="SteinIV"; version="0.1-1"; sha256="1bm4lc7g9h9jkb1dpzb84289bwxcywp0a8vylv6ipvhiqbqk5d95"; depends=[]; };
-  SteinerNet = derive2 { name="SteinerNet"; version="3.0.0"; sha256="1inm36mrxsiczh9i69gbx4d0y39ccgzrjkgdp3p2a1mv0dgzvwbi"; depends=[igraph]; };
+  SteinerNet = derive2 { name="SteinerNet"; version="3.0.1"; sha256="1jkvv0hsj85i1zfr1bmdsrbwgl11mxpfci3z7997m5vvb5fb5cxn"; depends=[igraph]; };
   Stem = derive2 { name="Stem"; version="1.0"; sha256="1fr02mi5qyxbqavdh2hg8ggw4nfjh3vs7g0vh834h6y0v53l71r5"; depends=[MASS mvtnorm]; };
   StepReg = derive2 { name="StepReg"; version="1.0.0"; sha256="1ifdns1fpsjcbwcy19h5hxnd3an53qwba2a7gpn2571zb1phraz8"; depends=[Rcpp RcppEigen]; };
   StepSignalMargiLike = derive2 { name="StepSignalMargiLike"; version="2.6.0"; sha256="0j85lvs2bljfhf482r31sq3xgk8l73hcw22wgxxp8z8nla38cwf9"; depends=[Rcpp]; };
   StepwiseTest = derive2 { name="StepwiseTest"; version="1.0"; sha256="1fdm4s9l6grgd45r98ybbsh40rnmnn16c0id6lv28cpmssi0iphi"; depends=[Rcpp RcppArmadillo]; };
-  StereoMorph = derive2 { name="StereoMorph"; version="1.6.1"; sha256="1q0fif4azv8nd37smhmr61mr4fls1jpm1ky40aqlv6kjm336pn1c"; depends=[bezier jpeg png Rcpp rjson shiny svgViewR tiff]; };
+  StereoMorph = derive2 { name="StereoMorph"; version="1.6.2"; sha256="1jjvkwln9kkjgyg1vn9ma6ffi32cxbkfh6zn69vilbdkmjcsycl2"; depends=[bezier jpeg MASS png Rcpp rjson shiny svgViewR tiff]; };
   StockChina = derive2 { name="StockChina"; version="0.3.1"; sha256="1myxyfchnkskyqb5yciw1wfk3006f51y89ipzfjzdlfyzwy1lsp1"; depends=[]; };
   Storm = derive2 { name="Storm"; version="1.2"; sha256="1fg8y9my9yp6px1gh43mr3m2s2z262mzq03pj52mqg3n186vk8z3"; depends=[permute rjson]; };
   StrainRanking = derive2 { name="StrainRanking"; version="1.2"; sha256="1r8avm9xajqmsy4x7pgh1yaffq7wl5i5kg75kdilydwmii6n19i0"; depends=[]; };
@@ -3741,31 +3893,32 @@ in with self; {
   SubLasso = derive2 { name="SubLasso"; version="1.0"; sha256="12m7ynlqhikjhavd12bhsd04s9cpv8aq5xgm875i10mb3ldpd1bd"; depends=[glmnet gplots psych]; };
   SubTite = derive2 { name="SubTite"; version="2.0.3"; sha256="1i95f3x1nkhx9kqzxwvi15x6yq7mcdihzjxh60la6jvq5nscfi3l"; depends=[Rcpp RcppArmadillo]; };
   SubVis = derive2 { name="SubVis"; version="2.0.2"; sha256="1nb3zgm6i5lwfwdrn8mk3wkg8a4ldfvs27ai8v46l4316qc1fa9p"; depends=[Biostrings shiny]; };
+  SubgrPlots = derive2 { name="SubgrPlots"; version="0.1.0"; sha256="0bhrb82yck4q72r268wqcnz2cm0sss92zff580s5jjijc2cwh3cp"; depends=[alluvial circlize colorspace diagram dplyr geoR ggplot2 gridBase gridExtra plyr polyclip scales shape sp survival survRM2 UpSetR VennDiagram]; };
   SubgrpID = derive2 { name="SubgrpID"; version="0.11"; sha256="1by23gdkbls7l5xa9nl055nbm0d3138pmfmasqmcy42h62wf7dw6"; depends=[AIM ggplot2 glmnet Matrix rpart survival]; };
   SubpathwayGMir = derive2 { name="SubpathwayGMir"; version="1.0"; sha256="1rw94idhbnaszr2xv1wgnjcxlnxkml912pvmqh2a1nqpwca5mscy"; depends=[igraph XML]; };
   SubpathwayLNCE = derive2 { name="SubpathwayLNCE"; version="1.0"; sha256="051csjavr9549y54yirfdn266i7swsvpbcakhziyz4sl4afwx5kl"; depends=[BiasedUrn graph igraph RBGL]; };
   Sunclarco = derive2 { name="Sunclarco"; version="1.0.0"; sha256="0jv92a4ciwkm0wa4irgb6ql3vf6v6p24fmbnk24pqp5p8drp8g5v"; depends=[survival]; };
   Sunder = derive2 { name="Sunder"; version="0.0.4"; sha256="1na41nnscyc4v1qbwzfgqk503r39xxbi6f446pscrz3v0v121f1a"; depends=[mnormt]; };
   SunterSampling = derive2 { name="SunterSampling"; version="1.0.1"; sha256="0qfld3j8xlpgp7c58zqw6gzm38m4d740lvdj5vmcflfcc6ja98sf"; depends=[]; };
-  SuperExactTest = derive2 { name="SuperExactTest"; version="1.0.0"; sha256="184s0pnwv9irqjlv24svfz3ami559ln03wjknyj67pwi4pfbzz87"; depends=[]; };
+  SuperExactTest = derive2 { name="SuperExactTest"; version="1.0.4"; sha256="01839mp8g0hyrhsd2n37km0dlmq53f2x6mqnghjgycg6w3dd7jjm"; depends=[]; };
   SuperGauss = derive2 { name="SuperGauss"; version="1.0"; sha256="1yqskaz4zsx87mcb9p7081h2lilaiwa3213yxlkyihyans7gnmp8"; depends=[fftw Rcpp RcppEigen]; };
-  SuperLearner = derive2 { name="SuperLearner"; version="2.0-23"; sha256="04bsgxdczw5gr8mkyxgzrsawv2zfcab5jd85azac3m2n08402v44"; depends=[cvAUC nnls]; };
-  SuperRanker = derive2 { name="SuperRanker"; version="1.1.0"; sha256="19cfz89557ygf5dvvqykmxcr72sfa0s2d37pplp6iwbhkl4wfw04"; depends=[prodlim Rcpp]; };
+  SuperLearner = derive2 { name="SuperLearner"; version="2.0-24"; sha256="0hzgqhkj638dcrd4rwi1m37i0rjap2llz6zvf32jbcc5r2i5ixmd"; depends=[cvAUC nnls]; };
+  SuperPCA = derive2 { name="SuperPCA"; version="0.1.0"; sha256="02kn3gvmlnn89pk054pmyxgkh5h1qf78fym0j3xagl3cq97h1js8"; depends=[fBasics glmnet MASS matlab matlabr Matrix matrixStats pracma psych R_matlab RSpectra spls timeSeries]; };
+  SuperRanker = derive2 { name="SuperRanker"; version="1.1.1"; sha256="1yiklw9zk7yw0xz5g3lmyl5lv325fnysimdwbxa37nyj6qdfv0ls"; depends=[prodlim Rcpp]; };
   SuppDists = derive2 { name="SuppDists"; version="1.1-9.4"; sha256="1ffx8wigqqvz2pnh06jjc0fnf4vq9z2rhwk2y3f9aszn18ap3dgw"; depends=[]; };
   SurfaceTortoise = derive2 { name="SurfaceTortoise"; version="0.1.0"; sha256="0cw2nsqc9dx36svb49pqkmrxwk5hhbih206mwwkzfyavswxd2lpv"; depends=[gstat gtools raster rgdal rgeos sp]; };
-  Surrogate = derive2 { name="Surrogate"; version="0.9"; sha256="10prqish36nvkipmagqqr5whq2qhy26nlm636i4kyj2iw3139xzg"; depends=[lattice latticeExtra lme4 logistf MASS mixtools msm nlme OrdinalLogisticBiplot rgl rms survival]; };
+  Surrogate = derive2 { name="Surrogate"; version="1.1"; sha256="1wmvr0wmhb0pfgn5rjq7v0zvkcy0bn01bqylbimkfrp5qlc2nf65"; depends=[extraDistr ks lattice latticeExtra lme4 logistf MASS mixtools msm nlme OrdinalLogisticBiplot rgl rms rootSolve survival]; };
   SurrogateTest = derive2 { name="SurrogateTest"; version="1.0"; sha256="0dw8ic2rskwhj9f013q0j5my7qfsqihfis93frrlz4qag68jddqn"; depends=[survival]; };
   SurvCorr = derive2 { name="SurvCorr"; version="1.0"; sha256="01rqdl503q1qnkn49iqnsjzis6azdsfi6s2hjky5k2zd6c9g18k5"; depends=[fields survival]; };
   SurvDisc = derive2 { name="SurvDisc"; version="0.1.1"; sha256="0ajvnm0a4krbm0m584bg58hd7dzl0f2rz5as1zsajx8agywb5qmv"; depends=[cubature MASS mvtnorm nlme simex survival]; };
   SurvGSD = derive2 { name="SurvGSD"; version="1.0.0"; sha256="0aa5zaf9akkqkxs8iqwnm93sfwakhhhs3qfafbk0vrwmb5yvzzm1"; depends=[flexsurv ldbounds mnormt]; };
   SurvLong = derive2 { name="SurvLong"; version="1.0"; sha256="000ywg0sdk9kailiy7ckhq4mkaawl9hh88w6apj5khgpxsyj8aw3"; depends=[]; };
-  SurvRank = derive2 { name="SurvRank"; version="0.1"; sha256="1i08yjprzd9irs46rifa5fsmmhwbsf4py0m8qp5rprznyr8504y3"; depends=[doParallel foreach ggplot2 glmnet gplots ipred mboost randomForestSRC reshape rpart sampling survAUC survival]; };
   SurvRegCensCov = derive2 { name="SurvRegCensCov"; version="1.4"; sha256="0ipr7lajnrklk963lrlgx946l6r191q3bfif4njkdmw0x797nzm2"; depends=[numDeriv survival]; };
+  SurvTrunc = derive2 { name="SurvTrunc"; version="0.1.0"; sha256="0b6s7llljp75agd57lmc1yq5acnfwy113khrfjcbm1l5ply6pz7f"; depends=[survival]; };
   Survgini = derive2 { name="Survgini"; version="1.0"; sha256="1gxkdv2j1njbgnwb52vyhz7p2lrcg3hp6sry3kyhp4wkvf6gnhxi"; depends=[survival]; };
   SvyNom = derive2 { name="SvyNom"; version="1.1"; sha256="1jym2x6nd9a3y7nk5hflqpy54gs67y4sqqspkvkalf5l2cc64did"; depends=[Hmisc rms survey survival]; };
   SwarmSVM = derive2 { name="SwarmSVM"; version="0.1-4"; sha256="1b0h1jfywsrfdj8dkbnlzvh7654rycagxij9jbzb65g6swss6ajx"; depends=[BBmisc checkmate e1071 kernlab LiblineaR Matrix SparseM]; };
-  SweaveListingUtils = derive2 { name="SweaveListingUtils"; version="0.7.7"; sha256="04yxhphf069y29b40i34kr4hvlcv8kgr6kqc2vdz2a40564fdsjb"; depends=[startupmsg]; };
-  SwissAir = derive2 { name="SwissAir"; version="1.1.4"; sha256="1avc32q7nbwjkcbml7z05car6khv1ghcz3miw0krm8i53w032c6f"; depends=[]; };
+  SwissAir = derive2 { name="SwissAir"; version="1.1.5"; sha256="0lh69924vhyilgn562jqn8m7z4dq3xmdj09501sbs7hbxfaiiyly"; depends=[]; };
   SyNet = derive2 { name="SyNet"; version="2.0"; sha256="0mb9dscddkvmkf7l3bbcy4dlfmrvvy588vxdqy5dr783bpa5dkiw"; depends=[tkrplot]; };
   SymTS = derive2 { name="SymTS"; version="1.0"; sha256="17vhm00zd9yxl6li36bsfkm4rsizjsm93ibrzgqnkl72sqmmlwfi"; depends=[]; };
   SympluR = derive2 { name="SympluR"; version="0.3.0"; sha256="0a3irbk5bh3af8rv4l4sh3ymj3icyqjv5akzmx6rrp6pr3mgq6c6"; depends=[httr jsonlite plyr readr]; };
@@ -3774,25 +3927,26 @@ in with self; {
   SynchWave = derive2 { name="SynchWave"; version="1.1.1"; sha256="127hllvig8kcs9gr2q14crswzhacv6v2s4zrgj50qdyprj14is18"; depends=[fields]; };
   Synth = derive2 { name="Synth"; version="1.1-5"; sha256="1cfvh91nz6skjk8jv04fhwv3ga9kcsfgq3mdy8lx75jkx16zr0pk"; depends=[kernlab optimx]; };
   T2EQ = derive2 { name="T2EQ"; version="1.1"; sha256="1skkkryw63pfx1xslia1lczb2psja6v6hcbph4isdcksb4l4pcig"; depends=[]; };
-  TAM = derive2 { name="TAM"; version="2.12-18"; sha256="1mbhf5ni2a1mlyh8qa7id3p0h1baqigmh5ch2yf18h8mn52ig47i"; depends=[CDM coda MASS mvtnorm Rcpp RcppArmadillo sfsmisc]; };
+  TAM = derive2 { name="TAM"; version="2.13-15"; sha256="0c13327dp2whnmns0k53f5rc2cz60kjhdh6nq4q021yhm2j4xd81"; depends=[CDM coda MASS mvtnorm Rcpp RcppArmadillo sfsmisc]; };
   TANDEM = derive2 { name="TANDEM"; version="1.0.2"; sha256="1h6m6aq2b5m9gdy4nck4dxv75gv50pfdhxx8xifgyv0d7n8czabq"; depends=[glmnet Matrix]; };
   TANOVA = derive2 { name="TANOVA"; version="1.0.0"; sha256="0c2mrahchwagisrkjl5l1s0mv0ny80kngq8dz0fjj9lwxwqwvwa5"; depends=[MASS]; };
   TAQMNGR = derive2 { name="TAQMNGR"; version="2018.5-1"; sha256="0bf0sgqa53l9y2bhwg2ngiwlcgrmj0nvxchlsmcc8zin388qf4pb"; depends=[Rcpp]; };
   TAR = derive2 { name="TAR"; version="1.0"; sha256="0wjh2n9x3yn9by9a6mjvkl96qy7z549g6dsqp7b4d96xwmyqxlbv"; depends=[mvtnorm]; };
   TBEST = derive2 { name="TBEST"; version="5.0"; sha256="15piy507vv8x59xgga17splxszy0vm87qjbfgxycvba633jishsa"; depends=[fdrtool signal]; };
-  TBFmultinomial = derive2 { name="TBFmultinomial"; version="0.1.1"; sha256="0cwga4pkfz4azm62v54jql07ymkhm97wyccz4gg6mhwy4qzigyjq"; depends=[nnet plotrix stringr VGAM]; };
+  TBFmultinomial = derive2 { name="TBFmultinomial"; version="0.1.3"; sha256="0cd0dr8vkf0sfriaafp2x63dilxmirm0fljxm82zw77c9j5ly3kv"; depends=[nnet plotrix stringr VGAM]; };
   TBSSurvival = derive2 { name="TBSSurvival"; version="1.3"; sha256="1r87qvnlvc18i12yi25lfpdb8b5p33fywi38hs2xp1y2vbvz5s9b"; depends=[BMS coda mcmc normalp R_utils Rsolnp survival]; };
   TCGA2STAT = derive2 { name="TCGA2STAT"; version="1.2"; sha256="15a5lh0nrdcxdwj7wj5m9rsvk1ygpp6wdjb4swilk91rb1lblikv"; depends=[CNTools XML]; };
   TCGAretriever = derive2 { name="TCGAretriever"; version="1.3"; sha256="0mi8j7k2b1sx75ka8ympydqpk8jqp8wz8dyf4vk4776fra7bq24p"; depends=[httr]; };
   TCIApathfinder = derive2 { name="TCIApathfinder"; version="1.0.2"; sha256="1fgjmz297jckdb0xsly1scq5n8y8awfgdkr4yfml4lim2mkdsigx"; depends=[httr jsonlite]; };
-  TDA = derive2 { name="TDA"; version="1.6.2"; sha256="1vkb4d3ayw8y4iskd6y1y9hnp0baidaxiqjqydxv2jwkdx0x9c3z"; depends=[BH FNN igraph Rcpp RcppEigen scales]; };
+  TDA = derive2 { name="TDA"; version="1.6.4"; sha256="0ni8lmdsf2q36rrgq3ay382m12834agfcw5rlqfa7fbqgmy4c9xs"; depends=[BH FNN igraph Rcpp RcppEigen scales]; };
   TDAmapper = derive2 { name="TDAmapper"; version="1.0"; sha256="0cxgr2888v8azgdr3sg4vlcdyivkrxkk6dsp1ahv4frrwvg2z09k"; depends=[]; };
+  TDAstats = derive2 { name="TDAstats"; version="0.3.0"; sha256="11g9yfgimkyl9z8kvzlvgkwc61vhdgvp6zy2izdbj18fxyqmcn3s"; depends=[ggplot2 Rcpp]; };
   TDCor = derive2 { name="TDCor"; version="0.1-2"; sha256="18085prcwhl5w717f1f7jcqskw2jvigvjjs2l5y6106ibiam6hxx"; depends=[deSolve]; };
   TDD = derive2 { name="TDD"; version="0.4"; sha256="193y8brybkjsajrbnlx1sdnw1wyyn9rhlm5wvp4aamqhvi8z13vn"; depends=[pracma RSEIS signal]; };
   TDMR = derive2 { name="TDMR"; version="2.0"; sha256="1dqyi7i4spacg0n6f3zdhyb84crlbqvkb8xdmvdjr1jd1zx5gc32"; depends=[adabag SPOT testit twiddler]; };
   TDPanalysis = derive2 { name="TDPanalysis"; version="0.99"; sha256="1kyhs4rpkm3gr55l6hrz4xcb9igk95si1m1sp175580k16n885z0"; depends=[plyr]; };
   TDboost = derive2 { name="TDboost"; version="1.2"; sha256="0sc9vby4892gm5b5h8gbdl4misqvgbkfp8fms53dk83malxkw1zx"; depends=[lattice]; };
-  TE = derive2 { name="TE"; version="0.2-2"; sha256="1yy6ky11ijnnkz2a4g6lww870pb4himn9nx230jnxpr0q8nsfqpb"; depends=[MASS rainbow]; };
+  TE = derive2 { name="TE"; version="0.3-0"; sha256="15530a5qjlh74c1qji76j25mm4c59gifp34y066f8j21f70rahfs"; depends=[MASS rainbow]; };
   TED = derive2 { name="TED"; version="1.1.1"; sha256="0nb2arx7c1m8ymnkmj3jwbcw23vhkr1f3vlym2hqs0pq0lnsl4g0"; depends=[animation fields foreach geoR RcppArmadillo zoo]; };
   TEEReg = derive2 { name="TEEReg"; version="1.1"; sha256="0v5qz3vvmcm3fh16kjb05j1r0yj23r7hrxf2www20ng3dmga5q0f"; depends=[]; };
   TELP = derive2 { name="TELP"; version="1.0"; sha256="0wzm3dz0489ha7dd6lkashvvjydck9jw2pavlx9plpksvzr4q9ph"; depends=[arules arulesViz ggplot2 gridExtra RColorBrewer tcltk2 tm wordcloud]; };
@@ -3800,26 +3954,26 @@ in with self; {
   TERAplusB = derive2 { name="TERAplusB"; version="1.0"; sha256="0mshx615awcf2arm39mgw2gzgpyn7a3f767484g7z4nqqlikwpgc"; depends=[]; };
   TESS = derive2 { name="TESS"; version="2.1.0"; sha256="05xsz2v847pwj4ja7hmg3zfbfqrwwzpf0ri0gjzb8snm2a7xm23y"; depends=[ape coda deSolve Rcpp]; };
   TExPosition = derive2 { name="TExPosition"; version="2.6.10"; sha256="12rgijlclaipwjjiyng7nwilzixdy6lsvncigcg0vjydhgk97jn1"; depends=[ExPosition prettyGraphs]; };
-  TFDEA = derive2 { name="TFDEA"; version="0.9.8.3"; sha256="0qg4nhlqqj7hc8lg732zz8klbbp3yksnq8q8n4ml3jz8gadrpyj7"; depends=[lpSolveAPI]; };
   TFMPvalue = derive2 { name="TFMPvalue"; version="0.0.8"; sha256="0h9qkl15k8v17v3g9bdnfwvh2s04ywjgg5y0xn2077dmywlja1bd"; depends=[Rcpp]; };
   TFX = derive2 { name="TFX"; version="0.1.0"; sha256="0xrjdbvg0ng4i0s8ql1pfyma10x4n045spilkb05750677r5j44p"; depends=[XML]; };
   TFisher = derive2 { name="TFisher"; version="0.2.0"; sha256="0vz74ww1lf1prfwz74hfsi3a8nzq8ss7aqjr85c1d87vss2796xx"; depends=[Matrix mvtnorm sn]; };
-  TH_data = derive2 { name="TH.data"; version="1.0-8"; sha256="17csnwyk2f3d47nghkfy9wly5kff8zhdcfwfml7509hjrjgi13s7"; depends=[MASS survival]; };
+  TH_data = derive2 { name="TH.data"; version="1.0-9"; sha256="03xfvww0krw0fn76qmmvrj7dx4shin57qafwhkrggfg25hbqlcfq"; depends=[MASS survival]; };
   TIMP = derive2 { name="TIMP"; version="1.13.0"; sha256="0b6g2afwjz2m7bnfhx1pjmq6x1ghjxgrwi6hz1l867qa4i2yx5hx"; depends=[colorspace deSolve fields gclus gplots minpack_lm nnls]; };
   TITAN2 = derive2 { name="TITAN2"; version="2.1"; sha256="0cxcgkf776411ln5wbfdyjxa42jw473vcq1kns6k6p8dpm1y91c2"; depends=[]; };
   TInPosition = derive2 { name="TInPosition"; version="0.13.6"; sha256="1cxxrfpbiyknaivv6gyp79lz0rxwhrndcd054smksxq8zcfz0v7c"; depends=[ExPosition InPosition prettyGraphs TExPosition]; };
   TKF = derive2 { name="TKF"; version="0.0.8"; sha256="1db87lwx26ayv1x2k8qd9dfr6j3jkvdl9ykisaxr42l6akqy21nr"; depends=[ape expm numDeriv phangorn phytools]; };
   TLBC = derive2 { name="TLBC"; version="1.0"; sha256="08w187akbhfbz6nrrf7avf02lrhgj7bbrjmim9gkh4wlbjhzvw67"; depends=[caret HMM randomForest signal stringr]; };
-  TLMoments = derive2 { name="TLMoments"; version="0.7.2.1"; sha256="1xgkbdnh79dj54jg5kf0c5kwykcvjaf4y16yyqf0vcc7aand6a3y"; depends=[hypergeo Rcpp]; };
+  TLMoments = derive2 { name="TLMoments"; version="0.7.4"; sha256="0p3d4ydz22k5ardk8qr7sgfhg9qw655bjlbjckvzwps8cbxgnag3"; depends=[ggplot2 hypergeo Rcpp]; };
   TLdating = derive2 { name="TLdating"; version="0.1.3"; sha256="12lmakk1zd6wqh1318pnl14i7km2hynjn4ymchfjr2bwmp45c1ra"; depends=[gplots Luminescence]; };
   TMB = derive2 { name="TMB"; version="1.7.14"; sha256="0bpc504nz8xfwr8ack52dj4hpjcykn6zyf8n228z32dw9d5n96dl"; depends=[Matrix RcppEigen]; };
   TMDb = derive2 { name="TMDb"; version="1.0"; sha256="0bbcmsv7b3vvskhdjww03gbcgql44vsvyjz2fajy9w2vgkr6ga90"; depends=[httr jsonlite]; };
   TNC = derive2 { name="TNC"; version="0.1.0"; sha256="0639wvylmk9mapvmz79ij65g1phv3ylc683awi4pgaf9yfwlmjkn"; depends=[]; };
   TOC = derive2 { name="TOC"; version="0.0-4"; sha256="1c16d4wrzir6v3c323sck6r9yz6mv1a70xamlj5ha1ydmfixcza9"; depends=[bit raster rgdal]; };
-  TOSTER = derive2 { name="TOSTER"; version="0.3.3"; sha256="1b1zmg0klf26hajlf420vpf8yf47np2l6ccl6062jmakg37ngh00"; depends=[ggplot2 jmvcore R6]; };
+  TOSTER = derive2 { name="TOSTER"; version="0.3.4"; sha256="1pxcvlw2nhh1sv0d662xc61rykf7kz7f4xjq3yrqf119gjcmps5s"; depends=[ggplot2 jmvcore R6]; };
   TP_idm = derive2 { name="TP.idm"; version="1.5"; sha256="07rxn0mpar3p6blg8fd3kbvdngyz9h9n0r0lcljnfdajfzbysv7h"; depends=[]; };
   TPD = derive2 { name="TPD"; version="1.0.0"; sha256="1fwj5l519mwsffm2pw2nbpm1mnlxkxzl53i7sqy810fccw47hgag"; depends=[ggplot2 gridExtra ks mvtnorm]; };
   TPEA = derive2 { name="TPEA"; version="3.1.0"; sha256="1yyc3q4dyf4d8m7wi851dnxf3xnvvfnvj28kl8z8py4r4jsb2hfy"; depends=[foreach igraph Matrix MESS RCurl XML]; };
+  TPMplt = derive2 { name="TPMplt"; version="0.1.0"; sha256="15jr2ww5vk6ac3h5bqdbsnch7fdn9c3vy5k3gdc271vf4cvghw93"; depends=[e1071 ggplot2 qpcR rgl rowr VBTree]; };
   TPmsm = derive2 { name="TPmsm"; version="1.2.1"; sha256="1vynzb6qpp8785rdjyarhvwbkasviamhljjlnp4i0dds96wwdgx1"; depends=[KernSmooth]; };
   TR8 = derive2 { name="TR8"; version="0.9.18"; sha256="14nfyqwqv1l5lr5zvywd5pxrv4qz0g5v5x8sdxkjbkxi9s7xrlaw"; depends=[gWidgets gWidgetstcltk plyr rappdirs RCurl readxl reshape taxize XML]; };
   TRADER = derive2 { name="TRADER"; version="1.2-3"; sha256="1w9m2b866dyj82s118m64q8j9a1chpq2km2pnn9mfwwj8sivgdgn"; depends=[dplR]; };
@@ -3829,6 +3983,7 @@ in with self; {
   TRSbook = derive2 { name="TRSbook"; version="1.0.2"; sha256="0lj20i6gybinc196nzjfi6ayzmm970s9vp43lj60v96g5dl7qv1b"; depends=[gdata IndependenceTests RColorBrewer xtable]; };
   TSA = derive2 { name="TSA"; version="1.2"; sha256="0gjfqibwdznz0nka95k4fjm935svxjpnqfywwz403crn2lh30h6q"; depends=[leaps locfit mgcv]; };
   TSCS = derive2 { name="TSCS"; version="0.1.1"; sha256="0dllaw69rl26hgqac5q66k13gfmnxhn3wf0j8nx5xvi7yclzc3ay"; depends=[ggplot2 rgl tseries]; };
+  TSEntropies = derive2 { name="TSEntropies"; version="0.9"; sha256="1bwb3kyhzc6sxhvpagf4vjmh8ghx44lpc9ms4jwrsrzdhcvnfc7l"; depends=[]; };
   TSEtools = derive2 { name="TSEtools"; version="0.1.1"; sha256="1s39j41s5d9zakvr536l7m9f72yjh3cbfpd6pijvcr3n3dznmra9"; depends=[xts]; };
   TSF = derive2 { name="TSF"; version="0.1.1"; sha256="0v3pq64yknp3n6lw6c87slv1avsv7rlb82gm670q4jzv5d174phv"; depends=[forecast fracdiff]; };
   TSGSIS = derive2 { name="TSGSIS"; version="0.1"; sha256="0zrlin6xi6sv5qb18a0wi8lzldqlwa9lbwnra44w3jza3kakff7n"; depends=[glmnet MASS]; };
@@ -3856,10 +4011,10 @@ in with self; {
   TSrepr = derive2 { name="TSrepr"; version="1.0.1"; sha256="07gxsp4cfzpjmm6l9wpcdxar3sngm0ih0gp4c8gb6kyzm7pb780n"; depends=[dtt MASS mgcv quantreg Rcpp wavelets]; };
   TSsdmx = derive2 { name="TSsdmx"; version="2016.8-1"; sha256="06h1iwgshiq4bvly5l1nrddrh2knc82z2aqxh8ls9ipbs7qjsvaf"; depends=[DBI rJava RJSDMX tframe tframePlus TSdbi]; };
   TSsql = derive2 { name="TSsql"; version="2017.4-1"; sha256="0f71q6gqfx4r3ghsmr572cvkpmf2xf7kipf10ii99z1y23dxmsdn"; depends=[DBI tframe tframePlus TSdbi zoo]; };
-  TSstudio = derive2 { name="TSstudio"; version="0.1.1"; sha256="1myvih5kd9pliczddjscqlq811dswqh9d8an8p5bi12h31w9pp30"; depends=[forecast lubridate magrittr plotly reshape2 xts zoo]; };
+  TSstudio = derive2 { name="TSstudio"; version="0.1.2"; sha256="1wl902mmddcbd8xk35n4gcdy8gk7vrb3ii110mkvwkbxw463b40l"; depends=[bsts colormap data_table dplyr forecast forecastHybrid lubridate magrittr plotly RColorBrewer reshape2 scales viridis xts zoo]; };
   TTAinterfaceTrendAnalysis = derive2 { name="TTAinterfaceTrendAnalysis"; version="1.5.4"; sha256="0r79qbmn4z9v4f4g737xs3mhc4dp6s6llkcz6c3hihwnq1vrvd7h"; depends=[e1071 lubridate multcomp mvtnorm nlme pastecs relimp reshape rkt tcltk2 zoo]; };
   TTCA = derive2 { name="TTCA"; version="0.1.1"; sha256="16slr4c2nwbchsg6fk5prq22p2v4cjxzk93wd3xggav2lzrf8a5h"; depends=[MASS Matrix quantreg RISmed tcltk2 VennDiagram]; };
-  TTR = derive2 { name="TTR"; version="0.23-3"; sha256="07r62ngyzjl4aszdxnr3n6bnbcgcap32yhd430jsilicg8n06di1"; depends=[curl xts zoo]; };
+  TTR = derive2 { name="TTR"; version="0.23-4"; sha256="18mzyv6cmxmqyqsfwlx2b2k055887mfgc2jgj8xkn8c6m56n05zb"; depends=[curl xts zoo]; };
   TTS = derive2 { name="TTS"; version="1.0"; sha256="0dhxj474dqjxqg0fc2dcx8p5hrjn9xfkn0rjn2vz3js92fa9ik9h"; depends=[mgcv sfsmisc]; };
   TTmoment = derive2 { name="TTmoment"; version="1.0"; sha256="0a4rdb4fk1mqnvvz0r15kni0g5vcj4xkkcwwv7c2gxc94xh5i5ih"; depends=[mvtnorm]; };
   TUWmodel = derive2 { name="TUWmodel"; version="1.0-1"; sha256="1q150r0m93cjj0q1qvn4drhgvhvvgb63d8iii5crhzjpqbdhyka7"; depends=[]; };
@@ -3869,20 +4024,23 @@ in with self; {
   TableToLongForm = derive2 { name="TableToLongForm"; version="1.3.1"; sha256="135q0bgsm2yndrg3vpwmihbqlyf3qkm97i0jvcw6bf06p6b2fk41"; depends=[]; };
   TailRank = derive2 { name="TailRank"; version="3.2.1"; sha256="142m0cq9j8y5g9wh4plxya1jqi0dv6p6praxx3jb84kwqspi91xr"; depends=[Biobase oompaBase oompaData]; };
   TanB = derive2 { name="TanB"; version="0.1"; sha256="05y9j1a5nzqfpsw48gix5c4ds1cm80liad9wnwmddhbx4fda6p32"; depends=[fdrtool pracma]; };
+  TangPoemR = derive2 { name="TangPoemR"; version="0.1.0"; sha256="06w5gg36mx0vdagkhy7rskgjv2d3irr0d3nkjw26vxp25x1py4sf"; depends=[jiebaR]; };
   TaoTeProgramming = derive2 { name="TaoTeProgramming"; version="1.0"; sha256="1b36s5mpm5vbhzcwmvm8g5pl7vpn6rsl5cnglfy8kgm1q9nnr7ff"; depends=[]; };
   TapeR = derive2 { name="TapeR"; version="0.3.3"; sha256="0q5j7pn05z7hinwl5ypnrgh9ibsw6hvdfszjbnvavzab3bx8l6nn"; depends=[nlme pracma]; };
-  Tariff = derive2 { name="Tariff"; version="1.0.3"; sha256="1z1yzy4f9k0zxa6zx1vp5axgjszics5wa8niy6087jz3r7y2bwph"; depends=[]; };
-  TauP_R = derive2 { name="TauP.R"; version="1.1"; sha256="10sjvcv70fjrsl5nnk9gm4sy7nhwm6aaq57gr37cb10v079ykmk1"; depends=[]; };
+  Tariff = derive2 { name="Tariff"; version="1.0.4"; sha256="1sf7qzv6cdx1k0h5cc2w1jbcpg07j02r5h31xcbsnsgd7wj3h3q1"; depends=[]; };
+  TauP_R = derive2 { name="TauP.R"; version="1.5"; sha256="02vk9rj8yx4n2pihgk93bs2f9wkpkyfqm2kp7ixj4wpa29a0iq6v"; depends=[]; };
   TauStar = derive2 { name="TauStar"; version="1.1.3"; sha256="06iq3kjbhyx2i8qlhvamnlch4j32psgw8q0wnvs4js513r6c0cqn"; depends=[Rcpp RcppArmadillo]; };
+  TaxicabCA = derive2 { name="TaxicabCA"; version="0.1.0"; sha256="0mkw7d2pksj98kyg2951achmvsr0x7f4snq0kk1s5158b5yi5npn"; depends=[]; };
   Taxonstand = derive2 { name="Taxonstand"; version="2.1"; sha256="0dvhiqggbv1by284fg38rcvvrxr9q3zp5gh51p1dh0129h73qj7i"; depends=[pbapply]; };
   TcGSA = derive2 { name="TcGSA"; version="0.11.1"; sha256="072i04cp91v2ygarpqg8dlqqf8hia0ryambcv83fcchz9hzs2yx6"; depends=[cluster cowplot ggplot2 gplots GSA gtools lme4 multtest reshape2 stringr]; };
   Tcomp = derive2 { name="Tcomp"; version="1.0.1"; sha256="1k0gsf3yr5n9zc2yi6szxm6s7bf61lz4fx8m3v48jlp5w900prwb"; depends=[forecast Mcomp]; };
-  TeXCheckR = derive2 { name="TeXCheckR"; version="0.5.1"; sha256="18p3hyrrglgn2fdn5q9p1ayb58nznpdr5sy9mniybzsxrmfhghax"; depends=[clisymbols crayon data_table fastmatch hunspell hutils magrittr rstudioapi zoo]; };
+  TeXCheckR = derive2 { name="TeXCheckR"; version="0.6.0"; sha256="1qrzslcipg3j1317dhizxhcxyx2dpx7jh91vkms10wgc6vpqgrw4"; depends=[clisymbols crayon data_table fastmatch hunspell hutils magrittr rstudioapi zoo]; };
   TeachBayes = derive2 { name="TeachBayes"; version="1.0"; sha256="1mfhlkm7wp2i4hvc63xzfyw3q4z1xhlbi933pkqkbrhih94z4rz7"; depends=[dplyr ggplot2 gridExtra LearnBayes shiny]; };
   TeachNet = derive2 { name="TeachNet"; version="0.7"; sha256="1p39bsf846r7zwz4lrrv2bpyx9yrkqzrnacajwrz3jjqj6qpp6cn"; depends=[]; };
   TeachingDemos = derive2 { name="TeachingDemos"; version="2.10"; sha256="016pivvy8gzz8f3clnr5dg488rb1lf0l5s00c3v34gm1dgiw5x1f"; depends=[]; };
-  TeachingSampling = derive2 { name="TeachingSampling"; version="3.2.2"; sha256="07c1wx7hl246kvj9ah55kdjpag8a9zbzh3jy0680w5nnv8vzsxxs"; depends=[]; };
-  TempleMetrics = derive2 { name="TempleMetrics"; version="1.1.0"; sha256="02cs2dgcmxgz1y98x4rpq4l4khqvbnr0248s6rgrgq5l3z2s4qr0"; depends=[BMisc pbapply]; };
+  TeachingSampling = derive2 { name="TeachingSampling"; version="3.4.2"; sha256="1r06if6ljlr9i3y5ri7akris97dsjy3n3n6sgz2dvy9szm4zsadp"; depends=[]; };
+  TempleMetrics = derive2 { name="TempleMetrics"; version="1.2.0"; sha256="0g8a799grsjqyq55pnlgixyq2qxhvl5k01jcjwc08q54w2dg0xf0"; depends=[BMisc pbapply]; };
+  Temporal = derive2 { name="Temporal"; version="0.1.1"; sha256="0x001apiph67cyh2ckx2k9mi6jb86agnmfvn94i27q9lpy4cn1sh"; depends=[expint numDeriv plyr Rcpp RcppEigen]; };
   Ternary = derive2 { name="Ternary"; version="1.0.1"; sha256="0myppwcb4qvz9nkig641zrlf8yhy96qyg1yzh5nnli8a8xg0hjpk"; depends=[]; };
   TestDataImputation = derive2 { name="TestDataImputation"; version="1.0"; sha256="07k4sgjda1gwdlx5rap5fhs5rww2ahzyf0fq98dsm99gvjajnmwn"; depends=[Amelia mice]; };
   TestFunctions = derive2 { name="TestFunctions"; version="0.2.0"; sha256="018nkz8r6vqahrzq3d588i3ffb1bmd1pdk87j4ivcdsx99mq15sn"; depends=[]; };
@@ -3891,21 +4049,20 @@ in with self; {
   TexExamRandomizer = derive2 { name="TexExamRandomizer"; version="1.2.3"; sha256="0l0vpx4rkib2m8hwhwy9j8pqyf7gpb9qg8wpnh3238snwpadgy3a"; depends=[assertthat jsonlite Rcpp stringr]; };
   ThankYouStars = derive2 { name="ThankYouStars"; version="0.2.0"; sha256="0r77ns3102wj1wvrfsa06l427imxyfhigpbs36cdxl2j87qrjzl6"; depends=[httr jsonlite]; };
   ThermIndex = derive2 { name="ThermIndex"; version="0.2.0"; sha256="0s9d55577dq61qixwwfwmqc2k2c8my00j2ng97ng42cw0jc7aylm"; depends=[]; };
-  Thermimage = derive2 { name="Thermimage"; version="3.1.0"; sha256="1gbbmmgmp6a8swl6kdfzf4kj9dpm17m809r2xrc58wg8gslx8m1c"; depends=[png tiff]; };
+  Thermimage = derive2 { name="Thermimage"; version="3.1.1"; sha256="10jffqhqvy2is41cgzmkzrncqd65yjsyag8qli114s799qd9g3bm"; depends=[png roxygen2 tiff]; };
   Thinknum = derive2 { name="Thinknum"; version="1.3.0"; sha256="0j48vgr4wsc2chm95aprq0xm0dk720xk5zmiijxasg92sfp0va6n"; depends=[RCurl RJSONIO]; };
   ThreeArmedTrials = derive2 { name="ThreeArmedTrials"; version="1.0-0"; sha256="075cn99k06lgdd0cwl1i9242fcxwmd5malcyks0mmwjf9kzw00z2"; depends=[MASS numDeriv]; };
   ThreeGroups = derive2 { name="ThreeGroups"; version="0.21"; sha256="0hipxa45v9ysb2qbk33kjycnvqar7bff1ajxd6fzhpc3jc9hflw4"; depends=[]; };
   ThreeWay = derive2 { name="ThreeWay"; version="1.1.3"; sha256="17yl8zq029wiy3c0f4ssljx85dnm9n862wj2d24w7p0lxlvarmz6"; depends=[]; };
-  Thresher = derive2 { name="Thresher"; version="0.12.3"; sha256="1lrydxrv67ga73bzxyvnibmggr9kixq2jb6as4cv35rm93vs5mrg"; depends=[ade4 ClassDiscovery colorspace MASS movMF oompaBase PCDimension]; };
+  Thresher = derive2 { name="Thresher"; version="1.0.2"; sha256="06qc2dzapp78d27x855fc03k7p878bkv6b1ry4a9m23kmlvsyfi4"; depends=[ade4 ClassDiscovery colorspace MASS movMF oompaBase PCDimension]; };
   ThresholdROC = derive2 { name="ThresholdROC"; version="2.6"; sha256="0ah102z6v9k5pxp3kbj5ffa9vhb7vi7axjkrg5qy5b4spnb71qsg"; depends=[MASS numDeriv pROC]; };
   TickExec = derive2 { name="TickExec"; version="1.1"; sha256="0v0m0wi49yw0ply19vnirl2zwnk61sxalx24l8cadvkssgs13509"; depends=[]; };
   TiddlyWikiR = derive2 { name="TiddlyWikiR"; version="1.0.1"; sha256="0vwwjdmfc8c0y2gfa8gls1mzvp29y39c9sxryrgpk253jj9px1kr"; depends=[]; };
   TideCurves = derive2 { name="TideCurves"; version="0.0.3"; sha256="0wll0zbkfas6hs4h8ma5km68nv2brw1k75ngw5lrnxilya22lrgp"; depends=[chron data_table fields]; };
   TideHarmonics = derive2 { name="TideHarmonics"; version="0.1-1"; sha256="1g1v99gh6mns4l8ipmw7kpalbk07m92ybcqjq7b0wsjmdvs1y67s"; depends=[]; };
   TideTables = derive2 { name="TideTables"; version="0.0.2"; sha256="1grm9s9np7xs2d8gql4sgg72rxpxiidw6g1ni8q97qgqr7r3105l"; depends=[chron data_table]; };
-  Tides = derive2 { name="Tides"; version="2.0"; sha256="0s7ja0vs8ag7myjq4kmza4ja9p76sdbbkaaamxbsgp9yaf02c6nf"; depends=[]; };
-  TileManager = derive2 { name="TileManager"; version="0.2.0"; sha256="1zk5q1m3imlr9ms81jyb9kibm0m5zmiidsv86qgnqj8r4b8hpqyh"; depends=[APfun raster rgeos sp]; };
-  TimeMachine = derive2 { name="TimeMachine"; version="1.2"; sha256="1dz0j777wmd8mpkm2ryiahpcw6w88w429zjcw6m67pi20r1992cb"; depends=[]; };
+  Tides = derive2 { name="Tides"; version="2.1"; sha256="0da3z010ali83qf8mf1znicqv8vvsa5r93mc40ax60ln2w33nlrm"; depends=[]; };
+  TileManager = derive2 { name="TileManager"; version="0.3.0"; sha256="1my9ljgr7j9qvgc2f2qj7d8m0yp0jq8xhq31jc6mnzbsppmr1q6n"; depends=[APfun raster rgeos sp]; };
   TimeProjection = derive2 { name="TimeProjection"; version="0.2.0"; sha256="04yr4cg2khkw9n3y3qk0ni1327k4pxm09zz2xg8mpjdvgi4p9yi3"; depends=[lubridate Matrix timeDate]; };
   TimeSeries_OBeu = derive2 { name="TimeSeries.OBeu"; version="1.2.2"; sha256="1a44fb29yacwgdiwaf5fpxzc5222cpi5mkv7l0dh43b6lh8f0j5k"; depends=[forecast jsonlite locfit trend tseries]; };
   TimeVTree = derive2 { name="TimeVTree"; version="0.3.1"; sha256="124kg9zcq4b2j4qvg9f6gykbmzf69qjnnw54nv213ip2h4rdkv32"; depends=[survival]; };
@@ -3919,8 +4076,8 @@ in with self; {
   ToolsForCoDa = derive2 { name="ToolsForCoDa"; version="1.0.2"; sha256="0x05phwm6gqw1pmars1ypg86sggflffw9g2d0lc5gfsy93nrg0rv"; depends=[calibrate HardyWeinberg MASS]; };
   TopKLists = derive2 { name="TopKLists"; version="1.0.6"; sha256="1hmm9g68scq8sqdb9axqn51p00mx6p6lw0fdgjljfi2q72xcqhq3"; depends=[gplots Hmisc]; };
   TotalCopheneticIndex = derive2 { name="TotalCopheneticIndex"; version="1.0.0"; sha256="1w8irl49cxg0rsbk57cl443gmy4i3vrh3ialx9c9d08wc7d2zisa"; depends=[]; };
-  TraMineR = derive2 { name="TraMineR"; version="2.0-8"; sha256="0x4ppghg7rbsj7q4q274vcs6kcwajjbi0s181r5qmzbxf20l8k9r"; depends=[boot cluster Hmisc RColorBrewer]; };
-  TraMineRextras = derive2 { name="TraMineRextras"; version="0.4.2"; sha256="1k2s3syx27vma5k0qcfx2579jyaxmx7crizkvz3wplhzdwag7wbk"; depends=[cluster RColorBrewer survival TraMineR]; };
+  TraMineR = derive2 { name="TraMineR"; version="2.0-9"; sha256="01sbf5dmy1bp0kqhn9xmf6kwjk3h6cgys28hzr61q4qxq5x0373f"; depends=[boot cluster Hmisc RColorBrewer]; };
+  TraMineRextras = derive2 { name="TraMineRextras"; version="0.4.3"; sha256="1dmhq5fk2a7vj8s1cvmm7p9pc77z6m46hh7nqp0vkvm811l16v02"; depends=[cluster RColorBrewer survival TraMineR]; };
   TrackReconstruction = derive2 { name="TrackReconstruction"; version="1.1"; sha256="1f2l3nshb6qrhyczw5rxqqzmsjxf0rvv3y78j8d9lv1nnd9kxzq5"; depends=[fields RColorBrewer]; };
   Trading = derive2 { name="Trading"; version="1.1"; sha256="1mzqck9n14xp16vflx1sx8lry0wjmx37hqv76ldj21xnk5zbrgil"; depends=[]; };
   TrafficBDE = derive2 { name="TrafficBDE"; version="0.1.0"; sha256="1lnh9lbjxaradivnd1dkd2szggjh2r4v7klpyxb862dxsmdxxrqw"; depends=[caret data_table dplyr lubridate neuralnet RCurl zoo]; };
@@ -3928,12 +4085,11 @@ in with self; {
   TrajDataMining = derive2 { name="TrajDataMining"; version="0.1.6"; sha256="1n5qcyc1kb8rdrqaji7pp63l2gyr6jim8spm8ydb4lnqfcnrin9g"; depends=[geosphere rgdal RPostgreSQL sp spacetime trajectories xts]; };
   TransModel = derive2 { name="TransModel"; version="2.1"; sha256="0brlr4w5k8xsgbrizm7ha0cmq0kqzd2fcjpszq7gym844jj93csi"; depends=[MASS survival]; };
   TransP = derive2 { name="TransP"; version="0.1"; sha256="0p6pfcp8qjdah0lfhx0a396nxjzp3ckpda9hl3snpppx79iyww55"; depends=[]; };
-  TransferEntropy = derive2 { name="TransferEntropy"; version="1.4"; sha256="0620axdj6qyskf7xszrs8j5d2l73ns4bgbdg03fvr8i7jmq70zb8"; depends=[BH Rcpp]; };
   TreatmentSelection = derive2 { name="TreatmentSelection"; version="2.1.1"; sha256="1pw64hx697jg2f1r2zd8y98g3ivj2gm8fnixcjfn4drsd0xixb4p"; depends=[binom ggplot2 survival]; };
   TreeBUGS = derive2 { name="TreeBUGS"; version="1.4.0"; sha256="0xcipsfwghnf2x2x0i77vr79xs646v354skwxxw6m72ff6arbfz4"; depends=[coda hypergeo logspline MASS Rcpp RcppArmadillo rjags runjags]; };
-  TreeDep = derive2 { name="TreeDep"; version="0.1.1"; sha256="0229ip18vbz36ks28p6pja30fb72qcdp7vwi2x0aiymhiigsmirs"; depends=[ggplot2 lubridate]; };
+  TreeDep = derive2 { name="TreeDep"; version="0.1.2"; sha256="1li5h44crg7gb8589w6g2c1ms7jpk3x3nq378f66ihwhfdak3zn9"; depends=[ggplot2 lubridate]; };
   TreePar = derive2 { name="TreePar"; version="3.3"; sha256="1sm518b1b4b1p0n5979qzvi2nacxpp3znbg9n75pf2a8z8wy6p4l"; depends=[ape deSolve Matrix subplex TreeSim]; };
-  TreeSearch = derive2 { name="TreeSearch"; version="0.1.2"; sha256="0q25zw53whp1v57pkc50h2j7jb64jpip00s0qnmvdgncbrs4zhx5"; depends=[ape memoise phangorn R_cache Rdpack]; };
+  TreeSearch = derive2 { name="TreeSearch"; version="0.2.0"; sha256="1zn2ig3iq5mfqs5gd31g1smm9vv1q68j1w9wpx4x4yxrwib35ghh"; depends=[ape colorspace gmp memoise phangorn R_cache Rdpack]; };
   TreeSim = derive2 { name="TreeSim"; version="2.3"; sha256="1y98m2whpx9kssgklw2d6prs6af9vcn8yva1l7lm1l509py1fn6h"; depends=[ape geiger]; };
   TreeSimGM = derive2 { name="TreeSimGM"; version="2.3"; sha256="0qwqvmmdn290llz5hmmx2q24jjmd1bxssrslzv31kzi1yq5h6w0b"; depends=[ape TreeSim]; };
   TrendInTrend = derive2 { name="TrendInTrend"; version="1.1.2"; sha256="1kdjrzv2s5vpyg1lx6qkxj3dyi84qwhrvz17mx731f9pp70cz29j"; depends=[pROC rms]; };
@@ -3949,6 +4105,7 @@ in with self; {
   TukeyRegion = derive2 { name="TukeyRegion"; version="0.1.2"; sha256="03lik9vkah3hjhn0l4ci95v2h4q8mnziq006idipn69l4gmnddxl"; depends=[bfp BH ddalpha MASS Rcpp rgl Rglpk]; };
   TunePareto = derive2 { name="TunePareto"; version="2.5"; sha256="0v1ylh4m5s80zp346pxxlvhm5070w83mlzfxjyp4n000c8r2nkf4"; depends=[]; };
   TurtleGraphics = derive2 { name="TurtleGraphics"; version="1.0-8"; sha256="0h77pj7rs3lrqi1y2dm1cbrmj13mjpq6y5nw8bcq0s2kbnkfw67l"; depends=[]; };
+  Tushare = derive2 { name="Tushare"; version="0.1.0"; sha256="0dcqj1jd9qslr1vn8s6s14nfrxjaxxcl53n87m1wzlqj94czmijq"; depends=[httr]; };
   TwoCop = derive2 { name="TwoCop"; version="1.0"; sha256="1ycxq8vbp68z82r2dfg2wkc9zk3bn33d94xay20g2p55lnzl2ifd"; depends=[]; };
   TwoPhaseInd = derive2 { name="TwoPhaseInd"; version="1.1.1"; sha256="0xsqiq4x7vmhif9j8zi1smbchwm4fsbgb10i4vxi0biijybizk9z"; depends=[survival]; };
   TwoRegression = derive2 { name="TwoRegression"; version="0.1.2"; sha256="0qr9zrfmbh4c4207gvwa384q5njjx6nsl6lc58d25m8bkfalifpi"; depends=[data_table dplyr magrittr seewave]; };
@@ -3956,9 +4113,12 @@ in with self; {
   UBCRM = derive2 { name="UBCRM"; version="1.0.1"; sha256="1h9f8wlxdgb67qqqnfhd9gfs4l2cq84vajhcb0psva0gwdd1yf6i"; depends=[]; };
   UBL = derive2 { name="UBL"; version="0.0.6"; sha256="0238irg7r3g248h4x4bdb308wvfqq99hwykywf4k2bssdd25kwjk"; depends=[automap gstat MBA randomForest sp]; };
   UCR_ColumnNames = derive2 { name="UCR.ColumnNames"; version="0.1.0"; sha256="1nwwq93f60r9aik51l7mzckg81f81nz5kgzynyzp5sm4y2wmpzwn"; depends=[]; };
+  UCSCXenaTools = derive2 { name="UCSCXenaTools"; version="0.2.5"; sha256="0vgjrmlscq4gcgccbabrcplbi1jyv5nd6zh1j57ys85f0w8mmvrl"; depends=[dplyr DT httr readr shiny shinydashboard]; };
+  UKgrid = derive2 { name="UKgrid"; version="0.1.0"; sha256="1xfg2v82264wlvv6x0xppz7g7jka1y0d615g9rwcb236y64h2xrk"; depends=[data_table dplyr lubridate magrittr rlang xts zoo]; };
   UNCLES = derive2 { name="UNCLES"; version="2.0"; sha256="0c61sm09dh0yfrjrjjnizg7qrf8xgc1zdldwhjh64kq8k8g5wa69"; depends=[class kohonen pdist]; };
   UNF = derive2 { name="UNF"; version="2.0.6"; sha256="0sr740dhfp7z9wvhajww43g5gz79x5y5dbflw5a813jgmiqm1jyq"; depends=[base64enc digest]; };
   UPMASK = derive2 { name="UPMASK"; version="1.1"; sha256="1qxajvld8g2mii12agypcm50fps9bai6d2wx6l0bv3srk80in7ai"; depends=[DBI MASS RSQLite]; };
+  UPSvarApprox = derive2 { name="UPSvarApprox"; version="0.1.1"; sha256="1lm3xzj70s070ag2sk24nq5ayckk3mnqfmwppbhq5i4y13fw6vip"; depends=[]; };
   USAboundaries = derive2 { name="USAboundaries"; version="0.3.1"; sha256="1mqbxkv347307mbvn70929bi3l8wmiwrp86rxdgy45g2ddjdcb6s"; depends=[]; };
   USCF = derive2 { name="USCF"; version="0.1.3"; sha256="00ynxfd4lg8g4mspz5izxvgkj27l2i1cnp0z0dnkhsbxsg0161mj"; depends=[]; };
   USGSstates2k = derive2 { name="USGSstates2k"; version="1.0.1"; sha256="11yk0pkss23j6fmmxnjkjm9p24ln343y4hijigbrbvcnb21wj2py"; depends=[sp]; };
@@ -3977,30 +4137,35 @@ in with self; {
   UniDOE = derive2 { name="UniDOE"; version="1.0.2"; sha256="14jz4acrvbv59sbr7gya8g0z749vv0i04gl5wl0y4218byjvw6bs"; depends=[Rcpp]; };
   UniIsoRegression = derive2 { name="UniIsoRegression"; version="0.0-0"; sha256="0lmrmb9sbk41ak7sbcrzhfnijb1skgb4lqg9m9imc98lcp69h7z0"; depends=[Rcpp]; };
   Unicode = derive2 { name="Unicode"; version="11.0.0-1"; sha256="1rjyz1d7xw9i1pzx0g653ymkr5hjcmri3dl8v0skzq13qc3fag3d"; depends=[]; };
+  UnitCircle = derive2 { name="UnitCircle"; version="0.1.3"; sha256="0z5ssps8l5ka4aw4984qml15scw4pfssara5dls82afhfhpkszsr"; depends=[]; };
   UnivRNG = derive2 { name="UnivRNG"; version="1.1"; sha256="0vjsqc1y24z7zlclglh55kkxjhy0dc5gjsy427zdv95j58jbxa66"; depends=[]; };
   UpSetR = derive2 { name="UpSetR"; version="1.3.3"; sha256="08vj7l92b8fpqyqwxshll2mhk3yhgyr74axvr2lf29z78bapymhz"; depends=[ggplot2 gridExtra plyr scales]; };
   UsingR = derive2 { name="UsingR"; version="2.0-6"; sha256="1lr8z45r5s7fxrd42rswm6w7s3k5nds244b9d525jb5v4n8w9kpw"; depends=[HistData Hmisc MASS]; };
   V8 = derive2 { name="V8"; version="1.5"; sha256="155389k8laa48akg0bfsz65s4ddmpk0xpi1ha56z1sayv01vrrgc"; depends=[curl jsonlite Rcpp]; };
   VAR_etp = derive2 { name="VAR.etp"; version="0.7"; sha256="0py5my3ilhcmz44m15hh0d219l9cz7rda4a9gbmf8wh9cgvvj1s3"; depends=[]; };
-  VARSEDIG = derive2 { name="VARSEDIG"; version="1.7"; sha256="1vf0gqf81lbksp9m6yj28wsk5s29fqcfvlymy91hni814dkb1mxw"; depends=[]; };
+  VARSEDIG = derive2 { name="VARSEDIG"; version="1.8"; sha256="10qkhi749z2hsywzdri6ari02x3ninprg1hj41fslvr7bjq2hn4z"; depends=[]; };
   VARsignR = derive2 { name="VARsignR"; version="0.1.3"; sha256="09mnf9hvsi4wx1c81yq97mzggwk6s7nka7awrws63icjybqjmra9"; depends=[HI minqa mvnfast]; };
   VARtests = derive2 { name="VARtests"; version="1.0.1"; sha256="19xmf4mg4v1fwd002ccinfbsbpcq9qfmzc2sf710mqv6i8ghv6jm"; depends=[Rcpp RcppArmadillo sn]; };
-  VBLPCM = derive2 { name="VBLPCM"; version="2.4.4"; sha256="09b80313w2dljl009xzcfhdcl6flc8nqzw9pzgfbciwi61666ppb"; depends=[ergm mclust network sna]; };
-  VCA = derive2 { name="VCA"; version="1.3.3"; sha256="03ibvn3a6bbgq36a1ibhi4givdnba6d0qcfbpbdxkz5masn1r23q"; depends=[lme4 Matrix numDeriv]; };
+  VBLPCM = derive2 { name="VBLPCM"; version="2.4.5"; sha256="1q5n87zzakdv0mflgsy6a5lc25ryjm7h90i3nr0dvccd0l8d4wpm"; depends=[ergm mclust network sna]; };
+  VBTree = derive2 { name="VBTree"; version="0.1.0"; sha256="0g0lyvclnfmd3zc8yhcibhli0hyxrba6wb3hx039fsg80q7y02h4"; depends=[tensorA]; };
+  VCA = derive2 { name="VCA"; version="1.3.4"; sha256="1qyf20i6bgjg3lxivhx4kgr66m63wkzw8r26aqhz0cs1j0w741dk"; depends=[lme4 Matrix numDeriv]; };
   VDA = derive2 { name="VDA"; version="1.3"; sha256="063mpwbyykx4f46wzfvrgnlq73ar7i06gxr4mjzbhqcfrsybi72b"; depends=[rgl]; };
   VDAP = derive2 { name="VDAP"; version="2.0.0"; sha256="134x4aisaim72xkyzb1vb8vhl2m4i12yzh6cj858a1ag7b0ing3n"; depends=[drc ggplot2 reshape2 stringr]; };
   VDSPCalibration = derive2 { name="VDSPCalibration"; version="1.0"; sha256="1hrmmhvk3mhd3bdl0msnm5shcj4cjgd3pn1rkfkv8fh4llqvz7w8"; depends=[]; };
-  VGAM = derive2 { name="VGAM"; version="1.0-5"; sha256="0ik3wyv6jj54bg34z0fzzk4xg0h6x98jqx4q2r7g1f0in0qgbb01"; depends=[]; };
+  VFP = derive2 { name="VFP"; version="1.0"; sha256="1gkpqxmxyv1hdaxk5yi3cd1k9q246q5gj9xhfnc87dp60rfg8p8f"; depends=[gnm MASS]; };
+  VFS = derive2 { name="VFS"; version="1.0.2"; sha256="1b8sl8id2gj4iqkpjzd3giybbix2jvskwsbw1kqj3zqr77hygxwg"; depends=[e1071 nleqslv]; };
+  VGAM = derive2 { name="VGAM"; version="1.0-6"; sha256="1fg31xz86jblqraifiy3q36d0hjqnll01jxx85xq87j1cyhj060j"; depends=[]; };
   VGAMdata = derive2 { name="VGAMdata"; version="1.0-3"; sha256="1jicadjaqmys1bbgkp64hmm8wwmi6f734il00v8qjz3jl9b02pkn"; depends=[]; };
   VGAMextra = derive2 { name="VGAMextra"; version="0.0-1"; sha256="0rlj4q6ry6v3fnpmg4s33ynn7qzs5m98csap55nyn6r9ynrh5gk5"; depends=[VGAM]; };
   VHDClassification = derive2 { name="VHDClassification"; version="0.3"; sha256="1ij4h3gzxb9mm9q743kc3sg2q609mnqz6mhlrbim1wcjji2b7bv4"; depends=[e1071 lattice]; };
+  VICmodel = derive2 { name="VICmodel"; version="0.1.1"; sha256="1236llbmrsgb7aiwdmdv2iq203avcsl68dkk652gfm69dwyxv111"; depends=[foreach Rcpp]; };
   VIF = derive2 { name="VIF"; version="1.0"; sha256="0yvg6ikrcs7mhg0pavhcywrfysv7ylvnhxpc5sam86dbp69flx9x"; depends=[]; };
   VIFCP = derive2 { name="VIFCP"; version="1.2"; sha256="0w41k25vss806m5vpwmmcfsmwaixmln0pliql3a6xlwsihha5i34"; depends=[]; };
   VIGoR = derive2 { name="VIGoR"; version="1.0"; sha256="1c24s917aafqy46b3xlsw8v3afs11nd5bq83vlygpgnz1612jpga"; depends=[]; };
   VIM = derive2 { name="VIM"; version="4.7.0"; sha256="1vjcs5wvjv94ln01d94h9rs4j50d3ky4n26mm3prgh13raylrmnd"; depends=[car colorspace data_table e1071 laeken MASS nnet Rcpp robustbase sp vcd]; };
   VIMGUI = derive2 { name="VIMGUI"; version="0.10.0"; sha256="14na9ss0vkcys979kdcciynwssqsvy2w566nydgzd3n7gcmx2agm"; depends=[Cairo foreign gWidgets gWidgetsRGtk2 Hmisc RGtk2 survey tkrplot VIM]; };
   VLF = derive2 { name="VLF"; version="1.0"; sha256="1il8zhm80mc22zj16dpsy4s6s9arj21l9ik0vccyrpnlr8ws3d3l"; depends=[]; };
-  VLMC = derive2 { name="VLMC"; version="1.4-1"; sha256="0y91cl9pv1d5s8956grdx3y4xa5l1fabrh1wl5hn11fjgyz1dcij"; depends=[MASS]; };
+  VLMC = derive2 { name="VLMC"; version="1.4-2"; sha256="1jlyi0zl6d3zk8mp3rzcsq850ivqcg8296jndrdzmlsrp8mnldrq"; depends=[MASS]; };
   VNM = derive2 { name="VNM"; version="7.1"; sha256="19qglcibb7r6jjz0n0piklwfv3hi4jphd6vmyfbm0ccjjkmn5nin"; depends=[Rcpp]; };
   VRPM = derive2 { name="VRPM"; version="1.2"; sha256="1cai5a71vzkx0d7cwzsxbcz7r9cdkqjk4l4bp2ffj5pp7nrlh15r"; depends=[fields ggplot2 Hmisc kernlab R2HTML ROCR shiny survival viridis]; };
   VSE = derive2 { name="VSE"; version="0.99"; sha256="07m5080nw72b77238v2wwdh4dxsvv6y78d4j1329n90wyj2crxl4"; depends=[car GenomicRanges igraph IRanges]; };
@@ -4008,12 +4173,13 @@ in with self; {
   VTrack = derive2 { name="VTrack"; version="1.21"; sha256="1acf2b8zy72shc4768rhikfa3590h3l3nwk32jk7pwsms0nb87rf"; depends=[checkmate doParallel foreach gdistance gstat Hmisc intervals lubridate plotKML plyr raster sp spacetime XML]; };
   VWPre = derive2 { name="VWPre"; version="1.1.0"; sha256="1ccrim9nx5fmmadg687gz9qrfkyxp48rskg1n2pxfwd3h10c9js1"; depends=[dplyr ggplot2 mgcv rlang shiny tidyr]; };
   VaRES = derive2 { name="VaRES"; version="1.0"; sha256="0gw05jiqgirhz3c8skbb07y4h44r6vi68gnd5y7ql455v0c2raza"; depends=[]; };
+  VarBundle = derive2 { name="VarBundle"; version="0.3.0"; sha256="0jfx9gkb3f29lgc0nrz3xc7m2ham0scx9lay7x5a6ira7crga6cr"; depends=[crayon dplyr glue magrittr R6 stringr tibble]; };
   VarED = derive2 { name="VarED"; version="1.0.0"; sha256="16j9p2a143y4hqclsv1mig0fccrzjx2r0lll0wz8isjp9x1wzjv8"; depends=[]; };
   VarReg = derive2 { name="VarReg"; version="1.0.2"; sha256="04235hr0r6sp7r3ccvcfb8l6p8yapcdrn6zl7mmvbyc4qb70gawh"; depends=[sn survival]; };
-  VarSelLCM = derive2 { name="VarSelLCM"; version="2.1.2"; sha256="0ilkn40b7845y3nlli160i6fmfaw2p1hvd97q2hnpvscrgmdqvz3"; depends=[ggplot2 mgcv Rcpp RcppArmadillo shiny]; };
+  VarSelLCM = derive2 { name="VarSelLCM"; version="2.1.3"; sha256="07ss4wxw1q1mvf6y860zcl5ja65f5yaqpgqj1k1yi5smqj50y0jk"; depends=[ggplot2 mgcv Rcpp RcppArmadillo shiny]; };
   VarSwapPrice = derive2 { name="VarSwapPrice"; version="1.0"; sha256="12q2wp2cqi9q47mzbb7sc250zkjqkhs9z0h93ik0h63dv339abgj"; depends=[]; };
-  VarfromPDB = derive2 { name="VarfromPDB"; version="2.2.7"; sha256="1sb31338r2p0jsa3k72q9lc5f57cybywmda7q2j8byngh1fjvgyz"; depends=[curl RISmed stringi stringr XML XML2R]; };
-  VariableScreening = derive2 { name="VariableScreening"; version="0.1.1"; sha256="03l929qhgr1bd721488xx0il1hlswv3zdad518ki94ghq9c4nmg3"; depends=[expm gee MASS]; };
+  VarfromPDB = derive2 { name="VarfromPDB"; version="2.2.10"; sha256="09j8y6n0bwsj3n620nbni6b7f4pmb91q41770sfpc5v3l5i3jc7c"; depends=[curl RISmed stringi stringr XML XML2R]; };
+  VariableScreening = derive2 { name="VariableScreening"; version="0.2.0"; sha256="04j75081g88g5hjydcnl3jcf99zzbrhlbjmmzcprvrlm5i5i3k93"; depends=[energy expm gee MASS]; };
   VarianceGamma = derive2 { name="VarianceGamma"; version="0.3-1"; sha256="0h424hdphbgi9i84bgzdwmsq05w61q8300x8f9y4szbxa5k2dnar"; depends=[DistributionUtils GeneralizedHyperbolic RUnit]; };
   VdgRsm = derive2 { name="VdgRsm"; version="1.5"; sha256="13mbv3ih6p2915wdzq4zjx7m4k37w1xddkxx6dzk1jiak2br9slj"; depends=[AlgDesign permute]; };
   Vdgraph = derive2 { name="Vdgraph"; version="2.2-2"; sha256="1q8l711zbrrj4h1wmpv93nbvlg8xi6kjv22zpidkck8ncpyyla80"; depends=[]; };
@@ -4024,7 +4190,7 @@ in with self; {
   VertexSort = derive2 { name="VertexSort"; version="0.1-1"; sha256="0n9m5l85ylin6756rsksak94nv0626qd7czhhj6plz4nfrr27sgl"; depends=[igraph snowfall]; };
   VeryLargeIntegers = derive2 { name="VeryLargeIntegers"; version="0.1.6"; sha256="1ccl4j3vb6aw1qfbqil67dy74daldajwzm7s5hqcidm73fd0wknc"; depends=[Rcpp]; };
   VetResearchLMM = derive2 { name="VetResearchLMM"; version="1.0.0"; sha256="1a7wm04bsr5shak7l8ypxlhlnx3qkq1jdpjnji1n05p6b00ih9h1"; depends=[ggplot2 lme4 lmerTest multcomp nlme]; };
-  VineCopula = derive2 { name="VineCopula"; version="2.1.6"; sha256="0gppfjffz5vc35rfjjplwjfp2vpw8hmfc0257k33qki46g5haw5j"; depends=[ADGofTest copula doParallel foreach kdecopula lattice MASS mvtnorm network]; };
+  VineCopula = derive2 { name="VineCopula"; version="2.1.8"; sha256="1sdj6561ya7px4bp4kq23ggjf1bmis465zpnwn0i650z3q6y7al7"; depends=[ADGofTest copula doParallel foreach kdecopula lattice MASS mvtnorm network]; };
   VisuClust = derive2 { name="VisuClust"; version="1.2"; sha256="0hnjmrz352950rzky88q4nwvkx7zp6x3lsm7kff5dl4w05iq4wsl"; depends=[aplpack]; };
   VizOR = derive2 { name="VizOR"; version="0.8-5"; sha256="1v76m67xdlg06w3dmp27mh3mv3lfqy6bd1iq907dynp2g4qf4ww0"; depends=[lattice rms]; };
   Voss = derive2 { name="Voss"; version="0.1-4"; sha256="056izh1j26vqjhjh01fr7nwiz1l6vwr5z4fll87w99nc5wc4a467"; depends=[fields]; };
@@ -4033,22 +4199,22 @@ in with self; {
   W3CMarkupValidator = derive2 { name="W3CMarkupValidator"; version="0.1-6"; sha256="0nfay5nqss3zlw4nikj8h3zzlnjfxjch4pm3qky15qrcigrybrbl"; depends=[curl xml2]; };
   WACS = derive2 { name="WACS"; version="1.0"; sha256="1x6vn7xhrnaggrxkvap6si8gz7b6z2zpjpbb9zgag4vyq3s7nxgy"; depends=[mclust mnormt mvtnorm tmvtnorm]; };
   WARN = derive2 { name="WARN"; version="1.2-3"; sha256="0vkp70cc3slz9y8qfybrqyjyglsxz9fnqrid735h2a113h4xvr3v"; depends=[MASS]; };
-  WCE = derive2 { name="WCE"; version="1.0.1"; sha256="0zp9xcq40vy2pv06rqn4d24bracm2vd3yyq4h56qppx47419fmm4"; depends=[plyr survival]; };
+  WCE = derive2 { name="WCE"; version="1.0.2"; sha256="105pwpd9ikm0gwz4r12jl6cgs1riwsk9pn5qk9cn3msgwa0sdynx"; depends=[plyr survival]; };
   WCQ = derive2 { name="WCQ"; version="0.2"; sha256="1yhkr2iazd7lh9r68xz1lh32z6r1sdnmqrjshcrm4rbwai0j3lkr"; depends=[]; };
   WDI = derive2 { name="WDI"; version="2.5"; sha256="0wm3b844pn33047wfd8yp22c6ysdsi8qx71fm1h5rq5vm9mcg9cp"; depends=[RJSONIO]; };
   WEE = derive2 { name="WEE"; version="1.0"; sha256="0i3h67p72lr708mwdw3rbzr1lqqr8n2dxv7f0bwyqzxv41sx1iz3"; depends=[doParallel foreach quantreg]; };
-  WGCNA = derive2 { name="WGCNA"; version="1.63"; sha256="1225dqm68bynkmklnsxdqdd3zqrpzbvqwyly8ibxmk75z33xz309"; depends=[AnnotationDbi doParallel dynamicTreeCut fastcluster foreach GO_db Hmisc impute matrixStats preprocessCore Rcpp robust survival]; };
+  WGCNA = derive2 { name="WGCNA"; version="1.66"; sha256="0rhnyhzfn93yp24jz9v6dzrmyizwzdw070a7idm0k33w1cm8sjqv"; depends=[AnnotationDbi doParallel dynamicTreeCut fastcluster foreach GO_db Hmisc impute matrixStats preprocessCore Rcpp robust survival]; };
   WHO = derive2 { name="WHO"; version="0.2"; sha256="0rpk7ddpkjcqs0m7cgxs55k178js0d70ccfximp2vqrsw0igkmk9"; depends=[dplyr httr]; };
   WLreg = derive2 { name="WLreg"; version="1.0.0"; sha256="0paghjcshhrr6y1gm98d6gr78zvgzhl678g9f96hppfa4q3lfpr7"; depends=[inline survival]; };
   WMCapacity = derive2 { name="WMCapacity"; version="0.9.6.7"; sha256="167wx759xi7rv74n6sdsdkjnfpxdsiybk4ik70psdgfwdqqcga1y"; depends=[cairoDevice coda gtools gWidgets gWidgetsRGtk2 RGtk2 XML]; };
   WMDB = derive2 { name="WMDB"; version="1.0"; sha256="10wdjy3g2qg975yf1dhy09w9b8rs3w6iszhbzqx9igfqvi8isrr1"; depends=[]; };
-  WMWssp = derive2 { name="WMWssp"; version="0.3.2"; sha256="019fcmf5zmbm20zyvx96nwp66lqm2xw7hbpacfwn8cvw3dq85chr"; depends=[rankFD]; };
+  WMWssp = derive2 { name="WMWssp"; version="0.3.4"; sha256="00kjddiy9sjfhnixj9p8v8sd389c1cm5j4rz4gar84mgmbc520gg"; depends=[rankFD]; };
   WPC = derive2 { name="WPC"; version="1.0"; sha256="0li502hwa4n945yfnilslyvl12ls66kazbfmxb4kkjbaf500mjp9"; depends=[msm survival]; };
   WPKDE = derive2 { name="WPKDE"; version="0.1"; sha256="100vla11fbw16x5n4w4kbslz4n725v4x6j0hrxzrk99ryl0crmf6"; depends=[]; };
   WRS2 = derive2 { name="WRS2"; version="0.10-0"; sha256="17iriwkng75iy93mp99ihzmvgpgbrg0sgwxs2yx1d3ss7h0k1x3j"; depends=[MASS mc2d plyr reshape]; };
   WRSS = derive2 { name="WRSS"; version="1.4"; sha256="1fkbrk9s3jn7qfv5jvzcgjf0jwbxi8dr7485msxj3najbhqd2qy5"; depends=[GGally ggplot2 Hmisc network]; };
-  WRTDStidal = derive2 { name="WRTDStidal"; version="1.1.0"; sha256="0yyhls0qzwwj4sz5d1nvzfiacx28dmf2hgjc7xgfi2qjkckg40hs"; depends=[caret dplyr EnvStats fields foreach forecast ggplot2 gridExtra lubridate purrr quantreg RColorBrewer survival tidyr]; };
-  WVPlots = derive2 { name="WVPlots"; version="1.0.0"; sha256="16wazxf4c1awxfix4dmp1zcwrfwbkddck71gxgimf471gx60hl8p"; depends=[cdata ggplot2 gridExtra mgcv sigr wrapr]; };
+  WRTDStidal = derive2 { name="WRTDStidal"; version="1.1.1"; sha256="0q2rdzbz3cbgr19sh9j3fqdn0lvwrq93qq2rjmnhx6ia9avkywa8"; depends=[caret dplyr fields foreach forecast ggplot2 gridExtra lubridate purrr quantreg RColorBrewer survival tidyr]; };
+  WVPlots = derive2 { name="WVPlots"; version="1.0.5"; sha256="0fp298n1dmsy5hs90aki7aprvybpikp3v8niwlnz7k3f2k2g9dl7"; depends=[cdata ggplot2 gridExtra mgcv sigr wrapr]; };
   WWGbook = derive2 { name="WWGbook"; version="1.0.1"; sha256="0q8lnd1fp4rmz715x0lf61py3xw8wg55yq3gvswaqwy68dlqrzjc"; depends=[]; };
   WWR = derive2 { name="WWR"; version="1.2.2"; sha256="0ia1dd12r1l08s9nhgvk55jmqwv58jawm25gd2ni6wpa3mcmq02g"; depends=[inline]; };
   WaterML = derive2 { name="WaterML"; version="1.7.1"; sha256="0aqcanq2l3m9w1kglmkbqshs80wx9inmjp0c1i2j901g4k35ss5j"; depends=[httr RJSONIO XML]; };
@@ -4058,14 +4224,15 @@ in with self; {
   WaveletArima = derive2 { name="WaveletArima"; version="0.1.1"; sha256="19hz2q280m41qh3m9lx3i9p6p5fl6pw8r9b06xk6sn04hxbim8xx"; depends=[forecast fracdiff wavelets]; };
   WaveletComp = derive2 { name="WaveletComp"; version="1.1"; sha256="07w2aa0jiflvxyqhgh48705hg8hjspd103jd00i2pcw2v42hwmf8"; depends=[]; };
   WaverR = derive2 { name="WaverR"; version="1.0"; sha256="084fhzggzm075w6wp2lqd3j0an21idhw8z5l8ynz4y96mpmn204a"; depends=[kimisc MASS]; };
-  WeMix = derive2 { name="WeMix"; version="1.0.2"; sha256="1wj1jxw65i94xf5zk9phgkwybvl2h05ynq0zhdc7q3j6b90mv9hn"; depends=[lme4 MASS minqa NPflow numDeriv Rcpp RcppArmadillo Rmpfr statmod]; };
+  WeMix = derive2 { name="WeMix"; version="2.1.0"; sha256="0bnj4iziclmvqxzb51sjvs0mlk9glkg5yvcvh349m8cvv2634dsb"; depends=[lme4 NPflow numDeriv Rcpp RcppArmadillo Rmpfr statmod]; };
   WebGestaltR = derive2 { name="WebGestaltR"; version="0.1.1"; sha256="0cdpfwp4whx8pff73acxga072lwbibl44hxdjs9jsb5i21h55vbr"; depends=[data_table doParallel foreach pkgmaker PythonInR rjson]; };
   WebPower = derive2 { name="WebPower"; version="0.5"; sha256="184wig66bcg7vsppaijq5jpq2hffl3bhshdx4ilz5hw98mimxg13"; depends=[lavaan lme4 MASS PearsonDS]; };
-  WeibullR = derive2 { name="WeibullR"; version="1.0.9"; sha256="13qkfnfp2pbvb78mj7fg8cgjnbrxv6dbms70wvn9f3mc70djmrb3"; depends=[Rcpp RcppArmadillo]; };
+  WeibullR = derive2 { name="WeibullR"; version="1.0.10"; sha256="1h2w1rgap9yjns7cby0559jwzzwhzjq1h6lwsawrfnni7c36iliq"; depends=[Rcpp RcppArmadillo]; };
   WeightIt = derive2 { name="WeightIt"; version="0.4.0"; sha256="1y0910wa1lx2jrbnzk9099v64skh7sm8cx85g62ikgcj291z6c8c"; depends=[cobalt]; };
   Weighted_Desc_Stat = derive2 { name="Weighted.Desc.Stat"; version="1.0"; sha256="030i12mnwlj976avvk3grrccgprsckmc35dm2ajwdfc9dijhypnj"; depends=[]; };
   WeightedCluster = derive2 { name="WeightedCluster"; version="1.2-1"; sha256="04gsr65mssv4cz4v8sh44qhyzn0isll057d45z4ljv6sx0an5yhl"; depends=[cluster RColorBrewer TraMineR]; };
   WeightedPortTest = derive2 { name="WeightedPortTest"; version="1.0"; sha256="007v3w9ssiv2sds7sikpal27g6pxwxhs7bvcyw6kr0vg8gvlbi8h"; depends=[]; };
+  WeightedROC = derive2 { name="WeightedROC"; version="2018.10.1"; sha256="1hdksd47pkky83g6hn6123f243yw3bzrlaibdgr2kd5kxn9rma3y"; depends=[]; };
   WhatIf = derive2 { name="WhatIf"; version="1.5-9"; sha256="0ihpp3wbhpsg00g0s31l0ca4q0a2sch2a2j8cgz14g8na43x8831"; depends=[lpSolve pbmcapply Zelig]; };
   WhiteStripe = derive2 { name="WhiteStripe"; version="2.3.1"; sha256="1qyv06ai83b1idfg4bgr97askyzlwi2dv8d5wkivb5czp7crdri1"; depends=[mgcv oro_nifti]; };
   WhopGenome = derive2 { name="WhopGenome"; version="0.9.7"; sha256="1xa7d9x5ny8g79scfkv7v5ix9m3mfzg0fks2bsan9zqyhcd01fsq"; depends=[]; };
@@ -4078,18 +4245,18 @@ in with self; {
   WilcoxCV = derive2 { name="WilcoxCV"; version="1.0-2"; sha256="1kbb7ikgnlxybmvqrbn4cd8xnqrkwipk4xd6yja1xsi39a109xzl"; depends=[]; };
   WindCurves = derive2 { name="WindCurves"; version="0.1.3"; sha256="0bvbnrkdk0g0radgcw4zbhq6czpvq3f7f34x83qk09i8ngmwd28c"; depends=[drc imputeTestbench readbitmap]; };
   WordPools = derive2 { name="WordPools"; version="1.0-2"; sha256="1izs4cymf2xy1lax85rvsgsgi05ygf0ibi9gzxc96sbgvy4m78kf"; depends=[]; };
-  WordR = derive2 { name="WordR"; version="0.3.0"; sha256="0wfgr5jg0vn58cn2dra3s46c5x5msqw3p666lbhhs48m75j12daq"; depends=[dplyr flextable officer]; };
+  WordR = derive2 { name="WordR"; version="0.3.1"; sha256="17g8v3xhdy57y0b95zrakhi0zamqi35v0zcmjpy47xyqyk4b2grs"; depends=[dplyr flextable officer]; };
   Wrapped = derive2 { name="Wrapped"; version="2.0"; sha256="1z5kypsd39z9arsw57axckvl8b4jnr5wv60s9z58f5s89gn5vxxg"; depends=[AdequacyModel ald cubfits evd fBasics gamlss_dist GeneralizedHyperbolic GEVStableGarch glogis irtProb LCA lqmm metRology NormalLaplace normalp ordinal sgt SkewHyperbolic sld sn VarianceGamma VGAM]; };
   WrightMap = derive2 { name="WrightMap"; version="1.2.1"; sha256="16zp7h28fap5hq5xzvkb4lc217yhfmwzfbvw2lsni0gf9qxqkgqd"; depends=[]; };
   WriteXLS = derive2 { name="WriteXLS"; version="4.0.0"; sha256="0nwxi36w3rkzw9j0qil64gakhb101rxg1wydjkwlpg0nbsj1sm50"; depends=[]; };
   WufooR = derive2 { name="WufooR"; version="0.8"; sha256="0nwf66y1jb7dw4yhkdl9g4brh59ky4q4x6j9zbqdn70pcj9hq9jx"; depends=[dplyr httr jsonlite]; };
   XBRL = derive2 { name="XBRL"; version="0.99.18"; sha256="1bwvxqbxdf1ynz2bv27l86h05h8y19q2li2y79xk819p5nkxq341"; depends=[Rcpp]; };
-  XGR = derive2 { name="XGR"; version="1.1.3"; sha256="01czagfjx5w212l5h29klrrsg0qiprlsiwpz7pfqh44haifnq4pz"; depends=[BiocGenerics dnet dplyr GenomicRanges ggnetwork ggplot2 ggrepel igraph IRanges Matrix plot3D RCircos rtracklayer S4Vectors supraHex tidyr XML]; };
+  XGR = derive2 { name="XGR"; version="1.1.4"; sha256="0npyfq587wg2qz2n0f8gmnq396h3xil20navbgfy7dbkvfncv3f0"; depends=[BiocGenerics dnet dplyr GenomicRanges ggnetwork ggplot2 ggrepel igraph IRanges Matrix plot3D RCircos rtracklayer S4Vectors supraHex tidyr XML]; };
   XHWE = derive2 { name="XHWE"; version="1.0"; sha256="1ca8y9q3623d0vn91g62nrqf3pkbcbkpclmddw5byd37sdrgsi5l"; depends=[]; };
   XKCDdata = derive2 { name="XKCDdata"; version="0.1.0"; sha256="1lx9frlbc549qrh4d3m79r3l9icfzqkgfgp8raa8x46a2havi0a5"; depends=[assertthat dplyr glue htmltools httr jsonlite magrittr tibble]; };
   XLConnect = derive2 { name="XLConnect"; version="0.2-15"; sha256="1cvq677m09gwpwhj3fy15mbfn0s0b1y35w95pjnijiwpcpdxiq96"; depends=[rJava XLConnectJars]; };
   XLConnectJars = derive2 { name="XLConnectJars"; version="0.2-15"; sha256="1ipqyjgsh5a1ygsbhyqxyj9wfjv1f73cyfrpx6jvf0is5jklhvxx"; depends=[rJava]; };
-  XML = derive2 { name="XML"; version="3.98-1.11"; sha256="18izvlg2x9mzr6yb3yf02ghwbyn00frki3av4lpc44r22m4djnsh"; depends=[]; };
+  XML = derive2 { name="XML"; version="3.98-1.16"; sha256="0nl1kk354r8snhj6p9mc74m7awvqc6akmd4y3a46y78yv3g15njp"; depends=[]; };
   XML2R = derive2 { name="XML2R"; version="0.0.6"; sha256="0azfh950r2b7ck3n1vzk3mdll7zy844nx3mbk676jxnj8gg7nxk5"; depends=[plyr RCurl XML]; };
   XMRF = derive2 { name="XMRF"; version="1.0"; sha256="0jnyy9pcksfadznidqsbwh8nlqv3k0yppj76q8a2g0aidbdmg2cc"; depends=[glmnet igraph MASS Matrix snowfall]; };
   XNomial = derive2 { name="XNomial"; version="1.0.4"; sha256="1mwx302576rmsjllbq2clfxilm3hkyp5bw0wmwqbn0kgv5wpy8z6"; depends=[]; };
@@ -4107,7 +4274,7 @@ in with self; {
   YuGene = derive2 { name="YuGene"; version="1.1.6"; sha256="1kv9n82wrms0c4y5fz9ckzhm1a609mnqp0pwvd0fpyscp8krmlpp"; depends=[mixOmics]; };
   ZIBBSeqDiscovery = derive2 { name="ZIBBSeqDiscovery"; version="1.0"; sha256="12g9rga9z6318ni6x6q9hdqlgl93y2xn8vf3gc6sm97fz8pliswx"; depends=[mcc]; };
   ZIBseq = derive2 { name="ZIBseq"; version="1.2"; sha256="13rjy4jl9wil6hhpra4qmdis0iyqxchzsf9l7q6r0dz1f7dpd2nq"; depends=[gamlss gamlss_dist nlme]; };
-  ZIM = derive2 { name="ZIM"; version="1.0.3"; sha256="1497ki0pr0x21fz5wa2z6zgb2br99z56gvfxyn9cglqq45if6cjh"; depends=[MASS]; };
+  ZIM = derive2 { name="ZIM"; version="1.1.0"; sha256="0scyfjn4ilsvha3x41c3b8bcfi31hlhwm77wn2a8hj5dsvnnmzig"; depends=[MASS]; };
   ZOIP = derive2 { name="ZOIP"; version="0.1"; sha256="0fraxzr2mfd7w705j2fryhh9vpg6nkag6kmk7p7in3zknxwipfh3"; depends=[boot GHQp numDeriv rmutil]; };
   ZRA = derive2 { name="ZRA"; version="0.2"; sha256="1sx1q5yf68hhlb5j1hicpj594rmgajqr25llg7ax416j0m2rnagi"; depends=[dygraphs forecast]; };
   ZeBook = derive2 { name="ZeBook"; version="1.0"; sha256="06dg3jk37y64mdcb8hpxgj8rclgxqm96dalm7y5zjb7nrj9jfydk"; depends=[deSolve triangle]; };
@@ -4115,6 +4282,7 @@ in with self; {
   ZeligChoice = derive2 { name="ZeligChoice"; version="0.9-6"; sha256="1whfwc42lsi54xfr423h6jwbvpj6yjyyf0854k1f1ms13liahm8w"; depends=[dplyr Formula jsonlite MASS VGAM Zelig]; };
   ZeligEI = derive2 { name="ZeligEI"; version="0.1-2"; sha256="0kilzfqmm6a41mmjvlynh3rnj30fqiq8gsja28fzwpf0lbl89slg"; depends=[dplyr ei eiPack Formula jsonlite MASS MCMCpack Zelig]; };
   ZillowR = derive2 { name="ZillowR"; version="0.1.0"; sha256="1wrr58p76ps29fqzzwgfvfibxrvc72p2yzs5kc2rv1yxzzcpyxvb"; depends=[RCurl XML]; };
+  ZipRadius = derive2 { name="ZipRadius"; version="1.0.1"; sha256="00q4a2bsajs5ns4vdm289iaj9mczxjn3ssyrnmg2z4wicr2ljizv"; depends=[dplyr geosphere ggplot2 magrittr rlang testthat]; };
   Zseq = derive2 { name="Zseq"; version="0.2.0"; sha256="06dndi2b1q79bmxax11bv0l5ifcz1mhpvbn90y6a6xymrgcq0ivi"; depends=[gmp]; };
   aCRM = derive2 { name="aCRM"; version="0.1.1"; sha256="0kzp568hd9c9a9qgniia5s5gv0q5f89xfvvwpzb197gqhs3x092v"; depends=[ada dummies kernelFactory randomForest]; };
   aLFQ = derive2 { name="aLFQ"; version="1.3.4"; sha256="1q2l5cwkcsng22nxckgc7aalvy3qhvgga5nkchfpy53sxg68awqv"; depends=[bio3d caret data_table lattice plyr protiq randomForest reshape2 ROCR seqinr]; };
@@ -4130,23 +4298,23 @@ in with self; {
   abc_data = derive2 { name="abc.data"; version="1.0"; sha256="1bv1n68ah714ws58cf285n2s2v5vn7382lfjca4jxph57lyg8hmj"; depends=[]; };
   abcdeFBA = derive2 { name="abcdeFBA"; version="0.4"; sha256="1rxjripy8v6bxi25vdfjnbk24zkmf752qbl73cin6nvnqflwxkx4"; depends=[corrplot lattice rgl Rglpk]; };
   abcrf = derive2 { name="abcrf"; version="1.7.1"; sha256="06vy3inikrr9hv36q4djhrgzi9zizdfnhz17wpra8kadmr7qj441"; depends=[MASS matrixStats ranger Rcpp RcppArmadillo readr stringr]; };
-  abctools = derive2 { name="abctools"; version="1.1.1"; sha256="0x6pjdvn5z510j42byddzdvg2mgv81yy72snia5k8h7bs9k5glfg"; depends=[abc abind Hmisc plyr]; };
+  abctools = derive2 { name="abctools"; version="1.1.3"; sha256="07s9dg10i8lsxl73b4n2hynca2fjgb0ykb0dz8c3zv6cgw3cyx97"; depends=[abc abind Hmisc plyr]; };
   abd = derive2 { name="abd"; version="0.2-8"; sha256="191gspqzdv573vaw624ri0f5cm6v4j524bjs74d4a1hn3kn6r9b7"; depends=[lattice mosaic nlme]; };
   abe = derive2 { name="abe"; version="3.0.1"; sha256="1f19h3xzzmjhvwc1rrb8z0rai3ip03y4gdi2gg9bfr5sg2nfklk6"; depends=[]; };
   abf2 = derive2 { name="abf2"; version="0.7-1"; sha256="0d65mc1w4pbiv7xaqzdlw1bfsxf25587rv597hh41vs0j0zlfpxx"; depends=[]; };
   abind = derive2 { name="abind"; version="1.4-5"; sha256="0b1zd8jbnl6l292cr9rb50m09fy3ylxvzkpgi5lfb1nbzddcwfis"; depends=[]; };
   abjutils = derive2 { name="abjutils"; version="0.2.1"; sha256="0qrsc4if7aif73qp95lw6b5986c2r0jn7m39123zij8k15vc935b"; depends=[devtools dplyr glue httr magrittr plyr progress purrr rstudioapi scales stringi stringr tibble tidyr]; };
-  abn = derive2 { name="abn"; version="1.0.2"; sha256="0jxpw5mplnpc57jjg9w3zrik40g7va6s8m9zbfsyf0vqn645wfwq"; depends=[Cairo]; };
+  abn = derive2 { name="abn"; version="1.2"; sha256="00k0razgdb5y5f62622fm7rxkcxrxg470nyyb02dvpfp60254kvs"; depends=[Cairo lme4 MASS nnet Rcpp RcppArmadillo rjags]; };
   abnormality = derive2 { name="abnormality"; version="0.1.0"; sha256="1fzfskl9akl06nliy8hkv2a0pznpj8pwcypg3gj5r2nzvr3kan9v"; depends=[MASS Matrix]; };
   abodOutlier = derive2 { name="abodOutlier"; version="0.1"; sha256="1pvhgxmh23br84r0fbmv7g53z2427birdja96a67vqgz18r3fdvj"; depends=[cluster]; };
   abundant = derive2 { name="abundant"; version="1.1"; sha256="1m76qdmqvwpgm0sihazi2dna7cgsz9rljal18vgffb5wamwmg9k7"; depends=[QUIC]; };
   acc = derive2 { name="acc"; version="1.3.3"; sha256="1ii2vm47djxbixa75h690q1s2f9m9x6i8nkygik93j6dayr6kr1m"; depends=[circlize DBI ggplot2 iterators mhsmm nleqslv PhysicalActivity plyr R_utils Rcpp RcppArmadillo RSQLite zoo]; };
   accSDA = derive2 { name="accSDA"; version="1.0.0"; sha256="0sgxy5y8kkc1n35657kifwfjsba7y5m1vbr7rkk5lmbpkzahqm61"; depends=[ggplot2 ggthemes gridExtra MASS rARPACK sparseLDA]; };
-  accelerometry = derive2 { name="accelerometry"; version="2.2.5"; sha256="00mn09j7y39sc7h5srnnfk2l73vhh6zq7rzc0vckfvs72lncmwv5"; depends=[Rcpp]; };
+  accelerometry = derive2 { name="accelerometry"; version="3.1.2"; sha256="13xzrwhr4i1nj9c8vrmfdg2rmrc8n446iihcyxmy99sm99hpzyip"; depends=[dvmisc Rcpp]; };
   accelmissing = derive2 { name="accelmissing"; version="1.4"; sha256="1nql9inx6azdzi3z4sfm2vdml2mms6krl8wzlf1dn1c97ahn57fy"; depends=[mice pscl]; };
   accrual = derive2 { name="accrual"; version="1.3"; sha256="11clm9s5c5518nmp6hd6pjnp0s28y92b2i2x0xgj4j5g816p4j3z"; depends=[fgui SMPracticals tcltk2]; };
   accrued = derive2 { name="accrued"; version="1.4.1"; sha256="05g1jb5914z18rcai1ahn7nihn27vr2rnadwv94gc1j7ivvikvs5"; depends=[]; };
-  acebayes = derive2 { name="acebayes"; version="1.5"; sha256="0533f9c44lq57cyar05z3ikg091h1pyrq84h2zghjyp66drnw6pa"; depends=[compare lhs randtoolbox Rcpp RcppArmadillo]; };
+  acebayes = derive2 { name="acebayes"; version="1.5.1"; sha256="1rhc8vib7y1nf4m5i21bsvfqmccfqv2ghlfa8vhx8dik6m733zn9"; depends=[compare lhs randtoolbox Rcpp RcppArmadillo]; };
   acepack = derive2 { name="acepack"; version="1.4.1"; sha256="1f98rpfjmhd92rdc3j004plyfpjailz6j0ycysbac0kgj83haxc2"; depends=[]; };
   acid = derive2 { name="acid"; version="1.1"; sha256="030i0y8s283ivbsmjccpbv9v7mgbcg2jk9df7vgcbbns74swf9hd"; depends=[gamlss gamlss_dist Hmisc]; };
   acm4r = derive2 { name="acm4r"; version="1.0"; sha256="1wqzc35i1rshx0zlmas8y4qkkvy6h9r4i4apscjjv1xg2wjflzxa"; depends=[MASS]; };
@@ -4167,39 +4335,41 @@ in with self; {
   adagio = derive2 { name="adagio"; version="0.7.1"; sha256="1h9l0ddrxq8y35iy9hdkxdvdwsqpnpkzzbkbwwhm4380lq1m7a3k"; depends=[]; };
   adapr = derive2 { name="adapr"; version="2.0.0"; sha256="1s57jdbi5pik56xjz1d4438ax6cywg2yq2s47h5g6wrwvpgr1qfw"; depends=[archivist devtools digest doParallel gdata ggplot2 git2r igraph knitr plotly plyr rmarkdown shiny shinydashboard versions]; };
   adaptMCMC = derive2 { name="adaptMCMC"; version="1.3"; sha256="08v11rl0p4w94knb0yzs1ysj42xillya62yaw3zm40d4pqv7vcky"; depends=[coda Matrix]; };
+  adaptMT = derive2 { name="adaptMT"; version="1.0.0"; sha256="1yllz1zd4cryf5bj8b2lcrj6zl79yjkllyh9p02ikryy5qmg419b"; depends=[]; };
   adaptTest = derive2 { name="adaptTest"; version="1.0"; sha256="08d7a5dlzhaj236jvaw3c91008l66vf5i4k5anhcs32a3j8yh2iv"; depends=[lattice]; };
   adaptalint = derive2 { name="adaptalint"; version="0.2.3"; sha256="0n047zibp3jsw8d3c971xnqgl8nsqxzcayic0xkz917pwlfrdnd7"; depends=[dplyr lintr purrr]; };
   adaptiveGPCA = derive2 { name="adaptiveGPCA"; version="0.1.2"; sha256="0bb6hw77dfa66b12xyazlp992gwjb1plylixlmq4cv4yjhnl9n5z"; depends=[ape ggplot2 phyloseq shiny]; };
   adaptivetau = derive2 { name="adaptivetau"; version="2.2-1"; sha256="1hd2l1jv4i5mg0k0g8bbrvv43nk1zxbwh21594zayrzjyikb2593"; depends=[]; };
   adaptsmoFMRI = derive2 { name="adaptsmoFMRI"; version="1.1"; sha256="1h79gh1bd6s2xhwf4whh72wf2cz4di2p8dnlf6192mfg108qc6nw"; depends=[coda Matrix MCMCpack mvtnorm spatstat]; };
-  addhaz = derive2 { name="addhaz"; version="0.4"; sha256="0i3czmv538m8s3pnxrhh2a1mrdv9m3hgzjkb25p7hygwnzz54drg"; depends=[boot MASS Matrix]; };
+  addhaz = derive2 { name="addhaz"; version="0.5"; sha256="1709jq9rp5lhqk0qpk8zkdwzhcv1bcach8mm7yiz7hzcc1mgxb12"; depends=[boot MASS Matrix]; };
   addhazard = derive2 { name="addhazard"; version="1.1.0"; sha256="0hk7br52wjmq605xgslv8lspr35aqpdgkiz2yljz31khy3y3vi8c"; depends=[ahaz rootSolve survival]; };
   addinslist = derive2 { name="addinslist"; version="0.2"; sha256="04jqhdy0axs1a9c0cfi3pqy9hd67jqxz79a2lj209gd27qv1q22c"; depends=[curl devtools DT miniUI rappdirs rmarkdown rvest shiny shinyjs xml2]; };
   additiveDEA = derive2 { name="additiveDEA"; version="1.1"; sha256="15nxpdybsda6yhjk23bpafr8v1zdx8332pcxf26k795q3ypjpiy2"; depends=[Benchmarking lpSolveAPI]; };
   additivityTests = derive2 { name="additivityTests"; version="1.1-4"; sha256="048ds90wqjdjy1nyhna3m06asdklbh8sx1n556kss2j1r1pma1sw"; depends=[]; };
   addreg = derive2 { name="addreg"; version="3.0"; sha256="13bwmgxylwi02g60j1rr51cr5jvvkl2nvf2lnnhnq46fhvs2ma7s"; depends=[combinat glm2 turboEM]; };
-  ade4 = derive2 { name="ade4"; version="1.7-11"; sha256="0wm54wcpn87rdh6vyw04cr8vgba899y6jsl61f22bmlvx6d7kkac"; depends=[MASS]; };
+  ade4 = derive2 { name="ade4"; version="1.7-13"; sha256="16z9jk4qj35ghsk4lwmq241dgc770y8a70dlmp9q4gz6d8ssgl7m"; depends=[MASS]; };
   ade4TkGUI = derive2 { name="ade4TkGUI"; version="0.2-9"; sha256="0kfnikkzhyfxskrphr65b8amjhdfq35x6dda4kivdhn7ak07s3ll"; depends=[ade4 adegraphics lattice tkrplot]; };
   adeba = derive2 { name="adeba"; version="1.1.2"; sha256="1z1law3qh6l902g62y8yapk4nypdmb20jmpwhxp9jbglalw9lm73"; depends=[mixtools pdist Rcpp]; };
   adegenet = derive2 { name="adegenet"; version="2.1.1"; sha256="0ynfblp0hbd3dp3k86fn1wyhqr28lk6hs2bg4q7gyf0sfdfzwhrh"; depends=[ade4 ape boot dplyr ggplot2 igraph MASS reshape2 seqinr shiny spdep vegan]; };
-  adegraphics = derive2 { name="adegraphics"; version="1.0-10"; sha256="0vig5c8hmsa6xapqzb8l4sm05qw7zc5s6b796bspffxj0crg3l3v"; depends=[ade4 KernSmooth lattice latticeExtra RColorBrewer sp]; };
+  adegraphics = derive2 { name="adegraphics"; version="1.0-12"; sha256="0rq1v9fp6nh181y8v8nxch2f8507hz5z2kaxy95ybp4bhp0jj37r"; depends=[ade4 KernSmooth lattice latticeExtra RColorBrewer sp]; };
   adehabitatHR = derive2 { name="adehabitatHR"; version="0.4.15"; sha256="1bwx2mfkzfknr6fjjkbx2xnm4gksd78i8fz0bcizqyi1zhg5hd0c"; depends=[ade4 adehabitatLT adehabitatMA deldir sp]; };
   adehabitatHS = derive2 { name="adehabitatHS"; version="0.3.13"; sha256="158a6qzks0hml6hk4f1vr66gvwdn09792i2ca3k23061i3j3xp75"; depends=[ade4 adehabitatHR adehabitatMA sp]; };
   adehabitatLT = derive2 { name="adehabitatLT"; version="0.3.23"; sha256="0hf6wpwhsvfp906xk5sadfnvz524zmm05d0h2zxpx6089c6hnw3j"; depends=[ade4 adehabitatMA CircStats sp]; };
   adehabitatMA = derive2 { name="adehabitatMA"; version="0.3.12"; sha256="13mhj36nfs36988g53yrmhyd8yq2zzxl8ppzql63964n04fybbpb"; depends=[filehash sp]; };
   adephylo = derive2 { name="adephylo"; version="1.1-11"; sha256="06pnrycc7562h17gxbli935289a48na3p4vpb2w96i5cbrjg4jqm"; depends=[ade4 adegenet ape phylobase]; };
   adepro = derive2 { name="adepro"; version="2.0.0"; sha256="0q9h7wmkgdnbhg2ygw32jl0bm2vrl32ig2nci9pphgwpsfzb34jq"; depends=[audio Cairo MASS shape shiny shinyBS]; };
-  adespatial = derive2 { name="adespatial"; version="0.2-0"; sha256="1yqpfkz7i8jkqkbpafm09s1g6mjigpca73b4959zw7gqp9aariz6"; depends=[ade4 adegraphics adephylo lattice MASS shiny sp spdep vegan]; };
+  adespatial = derive2 { name="adespatial"; version="0.3-2"; sha256="1368r72d7yjv6w4nl621bjphzqngvnjj5v9ibzsvs801qg71dx7l"; depends=[ade4 adegraphics adephylo lattice MASS shiny sp spdep vegan]; };
   adfExplorer = derive2 { name="adfExplorer"; version="0.1.4"; sha256="11z6jm20giqmmz4dwcpa9fshvrmlmv8m0y1vg053nch05884niz2"; depends=[]; };
   adhoc = derive2 { name="adhoc"; version="1.1"; sha256="0a59fv9glcqh4zzd0887ndrhlcaylja6vay2ifajp8an29gjk1vv"; depends=[ape pegas polynom]; };
   adimpro = derive2 { name="adimpro"; version="0.8.2"; sha256="0nfzk9pp4p16c1nvpidngag96r845376h8ljh7m6p6rhk9fs4jdw"; depends=[awsMethods]; };
-  adiv = derive2 { name="adiv"; version="1.1"; sha256="12m8p1agahzck1nm8j765wacc6vrl0pa31wld4rqxl7c2pvhs7f4"; depends=[ade4 adegraphics adephylo ape cluster phylobase]; };
-  adjclust = derive2 { name="adjclust"; version="0.5.6"; sha256="0hff2fjp6dyrsc6crcipq72x7bs3jblv42z7v2c63clrrs7byc0h"; depends=[Matrix matrixStats]; };
+  adiv = derive2 { name="adiv"; version="1.2"; sha256="1lmq499ipv2a4f3270hdp54x8n7gij4ssgagxc9i35qwqwdbr8gy"; depends=[ade4 adegraphics adephylo ape cluster phylobase rgl]; };
+  adjclust = derive2 { name="adjclust"; version="0.5.7"; sha256="059gzbnwkmy1l8yqbl8ksz80nm6pf917sxplp048jzx57sxpry2k"; depends=[capushe Matrix matrixStats]; };
   adjustedcranlogs = derive2 { name="adjustedcranlogs"; version="0.1.0"; sha256="08apfvpqvnnalx230p4qf5ckrwm1sgzras4zfrysgym5d4map9ci"; depends=[cranlogs dplyr lubridate rvest xml2]; };
   adklakedata = derive2 { name="adklakedata"; version="0.6.1"; sha256="1lzj3ib4bgfkq5lq12n47pwc52h7k35xbbwj6brwsgx1gd4fx3x6"; depends=[httr rappdirs]; };
-  adlift = derive2 { name="adlift"; version="1.3-3"; sha256="0q4ipk9yax4wqp3jckpx6ihriqaaaz0knxd19cm20qzdx37vz4id"; depends=[EbayesThresh]; };
+  adlift = derive2 { name="adlift"; version="1.4-1"; sha256="14q7fnhlqvxdhnfjhdhfmadz241srplbm069a7ybbsql21cphpf3"; depends=[EbayesThresh]; };
   admixturegraph = derive2 { name="admixturegraph"; version="1.0.2"; sha256="0ld4qyyvbnr5lz9ff64wjwif4c9xnqyjmbfgbl9bk6pia98zppl3"; depends=[doParallel dplyr foreach ggplot2 MASS neldermead pracma]; };
   adnuts = derive2 { name="adnuts"; version="1.0.0"; sha256="0jy9wq269r7s70bwld6ngxc6vmaj9vplq4wn97x4f3c6lqy42swc"; depends=[ellipse rstan]; };
+  adpss = derive2 { name="adpss"; version="0.1.1"; sha256="0p2gyfc4rxmms8zdsq4hjsh1njfl2s736arq8aq1am2wh1w9k5ch"; depends=[Rcpp]; };
   ads = derive2 { name="ads"; version="1.5-3"; sha256="1k1japzcf0mafxkv9dlzaqz9n4c749lsx0lja4wj327ninpdcfy4"; depends=[ade4 spatstat]; };
   advclust = derive2 { name="advclust"; version="0.4"; sha256="1g8a8q4zh6d4152jb66fh7wj7k6ks5k4kfcazzw70jdn10yi6b38"; depends=[clue ggplot2 knitr MASS reshape2]; };
   adwave = derive2 { name="adwave"; version="1.3"; sha256="11iy50ng0zxvwsvdsvx262j8zgqaai308lp5is47az7xzvk57mx7"; depends=[waveslim]; };
@@ -4207,35 +4377,37 @@ in with self; {
   aemo = derive2 { name="aemo"; version="0.2.0"; sha256="11msifszq7pzmcmwibf2dk2j5dqjc74hrxdxshlprkp6p8sfhijh"; depends=[assertthat dplyr lubridate stringr]; };
   afCEC = derive2 { name="afCEC"; version="1.0.2"; sha256="0jdppp93z5nb8m5qbry6cvd472mwiq1yrmm11906c3z2bfz7791f"; depends=[Rcpp RcppArmadillo rgl]; };
   afc = derive2 { name="afc"; version="1.4.0"; sha256="1iy1wa88kf6zi6x7lbd0jdir653cvzvdraliqpxbac413wwb5gwl"; depends=[]; };
-  afex = derive2 { name="afex"; version="0.21-2"; sha256="0wf6fvfwk1v2bswp1j8ab2r157vr1i9r1wr1fqhrcaxa2c4fikmz"; depends=[car emmeans lme4 lmerTest pbkrtest reshape2]; };
+  afex = derive2 { name="afex"; version="0.22-1"; sha256="065wbxljl77zqvc2c4gpfpfyc6mbnnrf24q399q9bxmrz3sapj8n"; depends=[car lme4 lmerTest pbkrtest reshape2]; };
   affluenceIndex = derive2 { name="affluenceIndex"; version="1.0"; sha256="1nb2dlsnvjsvkyrfdaskmpr3kv3qgdfb60xgmzvscfli0yf4dzr1"; depends=[]; };
   afmToolkit = derive2 { name="afmToolkit"; version="0.0.1"; sha256="1pm3xyh9vq10mmfgknlvlfr9f027xprrgy1dvbbxpi7f111hv1gl"; depends=[assertthat DBI dplyr ggplot2 gridExtra minpack_lm scales tibble]; };
   afpt = derive2 { name="afpt"; version="1.0.0"; sha256="0kshyzvw8sp7p686xi98g758zld3n7kq44lnvly8d0y8fg6ahcl2"; depends=[]; };
-  aftgee = derive2 { name="aftgee"; version="1.1-2"; sha256="0g4skg333vdj0cxwkcn7sh1km9rbwjjz40qz211rlzr7x76477rx"; depends=[BB geepack MASS survival]; };
-  agRee = derive2 { name="agRee"; version="0.5-1"; sha256="1hmqvpcz4vnpcl9f92q5fy1ca89l9sq25fnsw2mxfsa0yqbyxpw6"; depends=[coda lme4 miscF R2jags]; };
+  aftgee = derive2 { name="aftgee"; version="1.1.3"; sha256="1zkb99938q8pp318a0c0bpgzcqxc8ijygfz904lz6n40c5i2i9lz"; depends=[BB geepack MASS survival]; };
+  agRee = derive2 { name="agRee"; version="0.5-2"; sha256="1fhpkhnq8gbdy8k2w5wwn7h7gj0mmvk052fqxfazksxrlqicbbhb"; depends=[coda lme4 miscF R2jags]; };
   aggregation = derive2 { name="aggregation"; version="1.0.1"; sha256="0j9g604m2ccc7hcy02539yja9cf3xcbl25gvp838bp4x8w18my46"; depends=[]; };
   agop = derive2 { name="agop"; version="0.1-4"; sha256="1jwyl02z053rsdw9hryv1nyj9wlq310l51fghp1p0j51c159mlpx"; depends=[igraph Matrix]; };
-  agriTutorial = derive2 { name="agriTutorial"; version="0.1.3"; sha256="1ihz92f10p7nq0rw01hka5wg2svf2hgx9f39604ab0j99z0f99hz"; depends=[emmeans ggplot2 lattice lmerTest nlme pbkrtest]; };
+  agriTutorial = derive2 { name="agriTutorial"; version="0.1.4"; sha256="1abi6cdgh9k6x9vapca3gcf3hn1z9dsmw24as9i5i2c57q06b6qx"; depends=[emmeans ggplot2 lattice lmerTest nlme pbkrtest]; };
   agricolae = derive2 { name="agricolae"; version="1.2-8"; sha256="1c6n52jralp33hl3nmpv9fc9vsvs6lcz9j75f2zbz0r4sqd2mw89"; depends=[AlgDesign cluster klaR MASS nlme spdep]; };
-  agridat = derive2 { name="agridat"; version="1.15"; sha256="08wlh75jv856linkspx5w9irjlbjkhqy9wwaciks79s00ii5vbzj"; depends=[]; };
+  agridat = derive2 { name="agridat"; version="1.16"; sha256="1kgmjrj207md86qivadkmv3s2gh3hi9zv63bsj8b9vlcd9f58pfk"; depends=[]; };
   agrmt = derive2 { name="agrmt"; version="1.40.4"; sha256="1y2gnq6b4zkxknygg73r8qrd435y7c69iqn8i56kwk1ccc1rwddx"; depends=[]; };
   agsemisc = derive2 { name="agsemisc"; version="1.3-1"; sha256="1905q35jgjhghlawql43yh296kbpysp927x3hj750yshz5zayzyr"; depends=[lattice MASS]; };
   ahaz = derive2 { name="ahaz"; version="1.14"; sha256="1z7w5rxd5cya7kxhgxqvn72k87y33ginxra9g7j9wrfs5jgx6kvx"; depends=[Matrix survival]; };
   ahnr = derive2 { name="ahnr"; version="0.3.1"; sha256="1g8m3q108ricfyn4fjjaihpr93xz7fm2sfzg3i0fz1n1i703jwm8"; depends=[ggplot2 magrittr matrixcalc pdist pracma purrr visNetwork]; };
   ahp = derive2 { name="ahp"; version="0.2.12"; sha256="0zjhgl0smzx4bkhmdm4rmpyrq4hmxy1nkxvwqjr40pz7vm69icqx"; depends=[data_tree DiagrammeR formattable yaml]; };
-  aiRthermo = derive2 { name="aiRthermo"; version="1.2"; sha256="0j7nldmf63rap18dfa5rcwyy61fcn592fb3h1hp08b00qw39asx3"; depends=[]; };
+  ahpsurvey = derive2 { name="ahpsurvey"; version="0.2.2"; sha256="0y1afsxakfx6zfv4vjl54zgp5yqfl2haga08qbz9shjwsm28jw0p"; depends=[dplyr knitr magrittr Rdpack tidyr]; };
+  aiRthermo = derive2 { name="aiRthermo"; version="1.2.1"; sha256="058082qdfi1pbdgf26vbfahri1kbc8b2l816q4dq89j5aj5is0a2"; depends=[]; };
   aidar = derive2 { name="aidar"; version="1.0.5"; sha256="1q2iz2qzh2yl0v0sc537xq4vbx2nblym3kv419vr7jvrghdpx3vj"; depends=[XML]; };
   aimPlot = derive2 { name="aimPlot"; version="1.0.0"; sha256="1d52b7kccxba6j7n0gbd7pzs0p87zn32vv8gdf2f7lyr75qzgz7x"; depends=[ggplot2]; };
-  airGR = derive2 { name="airGR"; version="1.0.10.11"; sha256="0m64ww5f4ilrkkpnkv9k1qxsxh519is6y8wciq472jjfwcnsscb1"; depends=[]; };
-  airGRteaching = derive2 { name="airGRteaching"; version="0.2.2.2"; sha256="13alnmazf8n7sgfzh0hfq6i4cd2pl414vwrakgp36q365fkgzpnc"; depends=[airGR dygraphs htmlwidgets markdown plotrix shiny shinyjs xts]; };
+  airGR = derive2 { name="airGR"; version="1.0.15.2"; sha256="1lnqmf2rcj7hynlxnhb52jizx2c8b5bw04apgldg0bnr1jscn7pi"; depends=[]; };
+  airGRteaching = derive2 { name="airGRteaching"; version="0.2.3.2"; sha256="1i3pkpf6h958m0jw90q6767svy7waikwqxiq6spqg02lmfw88swp"; depends=[airGR dygraphs htmlwidgets markdown plotrix shiny shinyjs xts]; };
   aire_zmvm = derive2 { name="aire.zmvm"; version="0.6.1"; sha256="1a6aq1fkjj053mi36ibykncd1hmcl0f5c0l2fi0cbx6hcysc28ic"; depends=[dplyr httr lubridate progress readr readxl rvest sp stringr tidyr xml2]; };
-  airr = derive2 { name="airr"; version="1.1.0"; sha256="0fyyd6sw3fk7gwdxhxxrvsckyxj9qlqqsa20rhqdg3xslkwzzpjh"; depends=[readr stringi yaml]; };
+  airportr = derive2 { name="airportr"; version="0.1.2"; sha256="06jk4dhr4qj6fpmlvslnbqj67qy78spcb7yhqa4qn2im4kpmb73q"; depends=[dplyr]; };
+  airr = derive2 { name="airr"; version="1.2.0"; sha256="1vswbjmyhygmyqymkfxad9nwsbcgaggian1fyrx63w0y9c4dfv1h"; depends=[readr stringi yaml]; };
   ajv = derive2 { name="ajv"; version="1.0.0"; sha256="1qd5ncb7rdnnvqfknsvq9nrpxrh0zv3jyh4b91dcvfvhp262vfrm"; depends=[RJSONIO V8 yaml]; };
   akima = derive2 { name="akima"; version="0.6-2"; sha256="1klprj4a2pgy5pwdwnrn3siisi2lh8hr4z6vz38sdvjkcmakxnk1"; depends=[sp]; };
   akmeans = derive2 { name="akmeans"; version="1.1"; sha256="1nqbxbx583n0h2zmpy002rlmr6j86j6bg76xj5c69brrh59dpyw1"; depends=[]; };
   alabama = derive2 { name="alabama"; version="2015.3-1"; sha256="0mlgk929gdismikwx4k2ndqq57nnqj7mlgvd3479b214hksgq036"; depends=[numDeriv]; };
-  alakazam = derive2 { name="alakazam"; version="0.2.10"; sha256="0bfqc7rbchmj0dby8c8xlxff9gk18kq1v8zqfj3s7h3yddrr7znr"; depends=[dplyr ggplot2 igraph lazyeval progress Rcpp readr scales seqinr stringi]; };
-  albopictus = derive2 { name="albopictus"; version="0.3"; sha256="03vk2df17rkcg29il3jj5jlnjs4kkfnj1cfrxdgj3hgm7rbs38si"; depends=[]; };
+  alakazam = derive2 { name="alakazam"; version="0.2.11"; sha256="0p6rg09cxphp6mcbllwrvps4l9y2qssxhgxy6ryr4958gc1may16"; depends=[dplyr ggplot2 igraph lazyeval progress Rcpp readr scales seqinr stringi tidyr]; };
+  albopictus = derive2 { name="albopictus"; version="0.4"; sha256="13njv26lbymfkir5wkbnr0nkbi65n15d96bqin27lzd5rj576bqr"; depends=[]; };
   ald = derive2 { name="ald"; version="1.2"; sha256="1xmvxmyc1nmsrlyr0rvzz20jx6g1f2jvxpg9f39v48ngg5gmanjj"; depends=[]; };
   alfred = derive2 { name="alfred"; version="0.1.6"; sha256="07x012lj33m0pmxdwk39ywrlvlfkp7mb203dwv8v88cxplhbaiq3"; depends=[dplyr jsonlite lubridate magrittr tibble tidyr]; };
   algorithmia = derive2 { name="algorithmia"; version="0.0.2"; sha256="0kly70l9si8ni8n5xm30vai70pvfvip6354scvjqj34362s0lm0a"; depends=[base64enc httr rjson xml2]; };
@@ -4248,6 +4420,7 @@ in with self; {
   allelematch = derive2 { name="allelematch"; version="2.5"; sha256="1kws6y3igq6l85cfjrck2dzcfpgr56ridbc6w071h8kjw19mlzas"; depends=[dynamicTreeCut]; };
   allelic = derive2 { name="allelic"; version="0.1"; sha256="0xs4kd3vqb5ph8kqc3lcqgirrdkz8b627pvnczvci2g0sr3cl18j"; depends=[]; };
   alluvial = derive2 { name="alluvial"; version="0.1-2"; sha256="039frwrsxq1lb97s7vf2vbyyadimkigs628ymym06fxka53drdkp"; depends=[]; };
+  alpaca = derive2 { name="alpaca"; version="0.2"; sha256="0hjy7irxa31kv92xvnj58zasmy4drbmaq6g1js4d5ns6d6fqx845"; depends=[data_table Formula MASS Rcpp RcppArmadillo]; };
   alphaOutlier = derive2 { name="alphaOutlier"; version="1.2.0"; sha256="09yrbv7jsiymw5gzp8p92ki70v1fys2k75x4sb9s7wy3c58wn1cd"; depends=[nleqslv quantreg Rsolnp]; };
   alphabetr = derive2 { name="alphabetr"; version="0.2.2"; sha256="1pmp6zwhgycb38y5jbvrbv2nza7gyjh508vy09ml483c2cysvc1r"; depends=[clue dplyr multicool Rcpp]; };
   alphahull = derive2 { name="alphahull"; version="2.1"; sha256="129b2j9j60p2wvbb8703x18pydv1g715vmjcb1a80v70i93w4f49"; depends=[ggplot2 R_utils sgeostat spatstat splancs tripack]; };
@@ -4260,18 +4433,20 @@ in with self; {
   altmeta = derive2 { name="altmeta"; version="2.2"; sha256="1k3p06v8ccj0dbjfpl4nw6579bwcy4j925rk15v55khqmrlx780l"; depends=[]; };
   amap = derive2 { name="amap"; version="0.8-16"; sha256="1qnl2x98x64iaipkx5126rsddq2sx5ml43h75xyiyn30yvbmlxyk"; depends=[]; };
   ambhasGW = derive2 { name="ambhasGW"; version="0.0.2"; sha256="0v517i4whip45pk6bwlwval9pz367pcgzz62b2z22mrwgi6m6bck"; depends=[raster rgdal yaml]; };
+  ambient = derive2 { name="ambient"; version="0.1.0"; sha256="142q30rhi0wz0gp1v0swm83gbli8j6plpzzpqjwnjc693wd3a1ih"; depends=[Rcpp]; };
   ameco = derive2 { name="ameco"; version="0.2.9"; sha256="0vzwsy7gp17ghl1hgcsbfs9rarzl8dl36x6lplnzrisqv3dqmk25"; depends=[]; };
   amelie = derive2 { name="amelie"; version="0.2.0"; sha256="01v93dswr9nk0kvq50jri4568w17pwkcn64xbpzn2p4c7w6gqkhh"; depends=[]; };
   amen = derive2 { name="amen"; version="1.3"; sha256="1qaznfmnh3dlnp41afd37lr328qzy50hn8hi0c302wj0f992ycqg"; depends=[]; };
   aml = derive2 { name="aml"; version="0.1-1"; sha256="09xxlxp784wlb561apns3j8f2h9pfk497cy5pk8wr4hhqqv4d3al"; depends=[lars]; };
+  ammistability = derive2 { name="ammistability"; version="0.1.0"; sha256="00wcc84i9p8fmjjhhpi8435min5m749gsmvnh98zci9qk8glx4pl"; depends=[agricolae ggcorrplot ggplot2 Rdpack reshape2]; };
   ampd = derive2 { name="ampd"; version="0.2"; sha256="0bi8qngd37n60ym516yjcahxc536vdwm60rq5ld32170hww69j7c"; depends=[]; };
-  amt = derive2 { name="amt"; version="0.0.4.0"; sha256="1qdkvkxkxk7l2bjr11h0k9vhh5vapvm12f20lmj7rhamipc43ybv"; depends=[broom circular dplyr fitdistrplus FNN geosphere KernSmooth lazyeval leaflet lubridate magrittr maptools purrr raster Rcpp rgeos rlang sp survival tibble tidyr]; };
-  anMC = derive2 { name="anMC"; version="0.2.0"; sha256="1j6dah49sgfsb7bj4xys5rcaqw12rrkqhqryqz2xhdkazjmz3gpq"; depends=[mvtnorm Rcpp RcppArmadillo]; };
+  amt = derive2 { name="amt"; version="0.0.5.0"; sha256="0p7k9g9wkd6kmf5pid8kgni1ilb6vrn7gb38l8g47zpwx5wg4zhf"; depends=[broom circular dplyr fitdistrplus FNN geosphere KernSmooth lazyeval leaflet lubridate magrittr maptools purrr raster Rcpp rgeos rlang sf sp survival tibble tidyr velox]; };
+  anMC = derive2 { name="anMC"; version="0.2.1"; sha256="02mzmaxjjbjqarfwdv6465p5hvnnpsqfkb1wkm68bx64cimgldki"; depends=[mvtnorm Rcpp RcppArmadillo]; };
   anacor = derive2 { name="anacor"; version="1.1-3"; sha256="0mj8g9p4fla0ax9jvcq7kii4lrhj8g872p11nys06anva22qjp51"; depends=[car colorspace fda]; };
   analogsea = derive2 { name="analogsea"; version="0.6.0"; sha256="1fcvf3yci3szm155pnk89q36dgc55wdlffvll642zn26zc5d1y5n"; depends=[aws_s3 httr jsonlite magrittr yaml]; };
-  analogue = derive2 { name="analogue"; version="0.17-0"; sha256="00wk4jnzif28ibx9s3m68qdx64ycdgg5yr6ybb0srlydikvf1sy8"; depends=[brglm lattice MASS mgcv princurve vegan]; };
+  analogue = derive2 { name="analogue"; version="0.17-1"; sha256="09xv6dxdlc5kwsbh9vzp2mnxgbccimiadjpj12iiw6hcplw6v4ma"; depends=[brglm lattice MASS mgcv princurve vegan]; };
   analogueExtra = derive2 { name="analogueExtra"; version="0.1-1"; sha256="1s3qs10hf6hkna0bicid1mc8x8r449bl93xpgyw6lnsjgh2yx62c"; depends=[analogue rgl vegan3d]; };
-  analytics = derive2 { name="analytics"; version="2.0"; sha256="1jkdjqc3fnvvsgi6x9ncf36rxzq0a55cmgkcv92mfmpcramg2lk6"; depends=[car cluster fractal lmtest MASS np powerplus robust trend TSA urca]; };
+  analytics = derive2 { name="analytics"; version="3.0"; sha256="0js3c8lwj3knccb55nq03cbjlf4w390p9aid2mi5x80l3ayd9in1"; depends=[car cluster fractal lmtest MASS np powerplus robust trend TSA urca VIM]; };
   analyz = derive2 { name="analyz"; version="1.4"; sha256="0qdh1gld2dkl0krbhm2vcqg8dfs03dn51rclgsw02554s06dlgxw"; depends=[]; };
   anchoredDistr = derive2 { name="anchoredDistr"; version="1.0.3"; sha256="07q4np0zryb49cpi7w5iz0qna63cyp9nz13d8ws6x9ccg417r99a"; depends=[DBI dplyr ggplot2 np plyr reshape2 Rmisc RSQLite]; };
   anchors = derive2 { name="anchors"; version="3.0-8"; sha256="12gd2526y7s2a8i6b9xma2c3sc6zxnwzl6sn8b50hbxizwr8d34j"; depends=[MASS rgenoud]; };
@@ -4284,44 +4459,45 @@ in with self; {
   animalTrack = derive2 { name="animalTrack"; version="1.0.0"; sha256="0jlvfflpaq64s48sblzh1n1vx8g3870iss97whigri29s6hn79ry"; depends=[rgl]; };
   animation = derive2 { name="animation"; version="2.5"; sha256="0pxmihfr3q1hh4cdnzf7wbzqak5spa3kv4p1wl89giqqngqzwcmj"; depends=[]; };
   anipaths = derive2 { name="anipaths"; version="0.9.6"; sha256="0wqpnn85gqsy0m40allx0mngnq5lqz5qhl9g8v0kh0073xq4mvvc"; depends=[animation knitr mgcv RColorBrewer rgdal scales sp]; };
-  annovarR = derive2 { name="annovarR"; version="1.0.0"; sha256="0l2csp06m5f3i1b4h0pvl8mmzx25c0b411c5sdc3qszirbplh038"; depends=[AnnotationDbi BioInstaller configr data_table DBI futile_logger glue ngstk RMySQL RSQLite stringi stringr vcfR]; };
   anocva = derive2 { name="anocva"; version="0.1.1"; sha256="1byg40jla71k1901js5h9yq89j63d00vkm60id1fxlpv95c4wdrr"; depends=[cluster]; };
   anoint = derive2 { name="anoint"; version="1.4"; sha256="10gdqgag9pddvxh80h458gagvv1474g4pcpa71cg3h7g62rqvmv5"; depends=[glmnet MASS survival]; };
   anomalize = derive2 { name="anomalize"; version="0.1.1"; sha256="1szxjc8bh616z2xc50hcggh4ky1b7343i3xmg81rbssvkl2gghlh"; depends=[dplyr ggplot2 glue purrr rlang sweep tibble tibbletime tidyr timetk]; };
-  anomaly = derive2 { name="anomaly"; version="1.0.0"; sha256="1l86y3hzqi06s1v3l5vkvk679cy630i2pj0yzxyznm5fjq43l47r"; depends=[dplyr Rdpack rlang]; };
+  anomaly = derive2 { name="anomaly"; version="1.1.0"; sha256="0v1pgyckqkimyh1hh68clyqnm9hkzmz3dal676l9qaiwbgqmkxi4"; depends=[dplyr ggplot2 Rdpack rlang]; };
   anomalyDetection = derive2 { name="anomalyDetection"; version="0.2.5"; sha256="132wb0xz04zib3x7802b2q546rkf097rsxyi9mi86g6vv7yyw9z1"; depends=[caret dplyr ggplot2 gmp magrittr MASS plyr purrr Rcpp RcppArmadillo tibble tidyr]; };
   anominate = derive2 { name="anominate"; version="0.6"; sha256="01p2qkqf88bzhwywyass5r8dwg2ycflmkbzmsps7fzy0kv3xyb02"; depends=[coda MCMCpack pscl wnominate]; };
   anonymizer = derive2 { name="anonymizer"; version="0.2.0"; sha256="0zlzxcqy8fjhh6ab58a1pi0k686dzgap58d160ms6bsr5mgn3fbf"; depends=[]; };
-  antaresProcessing = derive2 { name="antaresProcessing"; version="0.15.3"; sha256="0asr43lf8vajf72sgpixy5w7r7v7b83a0877q6dadcxxr4mifr8f"; depends=[antaresRead data_table]; };
-  antaresRead = derive2 { name="antaresRead"; version="2.1.2"; sha256="1vw2q2affpi4icqbsh89qkhdf6xxfjnwn6939ibgw5vv8df1b11s"; depends=[data_table lubridate plyr shiny stringr]; };
-  antaresViz = derive2 { name="antaresViz"; version="0.14.0"; sha256="0xli4bvk5nds357wq3r1dp155xrcxcjscndbysfdv52827i80nxs"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts raster rgeos shiny sp spMaps webshot]; };
+  antaresProcessing = derive2 { name="antaresProcessing"; version="0.16.0"; sha256="1wbrp07j8518p53yismij5mylxz34r3n8k4f7k8aj43armavkmxk"; depends=[antaresRead data_table]; };
+  antaresRead = derive2 { name="antaresRead"; version="2.2.1"; sha256="0j94waw0pq9fni4kpmcry354fwpqg64k9si5p3zgcrxhx3ah2dp5"; depends=[bit64 data_table lubridate plyr shiny stringr]; };
+  antaresViz = derive2 { name="antaresViz"; version="0.15.0"; sha256="16gf5spgx56rgf2d25zv5dihhbbgvfxryswfqa4gjlpjc2827zar"; depends=[antaresProcessing antaresRead assertthat data_table dygraphs geojsonio htmltools htmlwidgets leaflet leaflet_minicharts lubridate manipulateWidget plotly rAmCharts raster rgeos shiny sp spMaps webshot]; };
   antitrust = derive2 { name="antitrust"; version="0.99.10"; sha256="1xgkbsnsn39s37my7sj917kvq67gxwai7k7lym2i18m60cnz0ilb"; depends=[BB evd MASS numDeriv]; };
-  antiword = derive2 { name="antiword"; version="1.1"; sha256="0nbx2l0d2y4qvcw4dw3m26zfkgdmav4cq0l00gib7l3y9pqxzjh5"; depends=[sys]; };
+  antiword = derive2 { name="antiword"; version="1.2"; sha256="0715ykn1ik6x8qgmdw39adkxark4i5p9wpk7cirk8hz1g2qx6kij"; depends=[sys]; };
+  anyLib = derive2 { name="anyLib"; version="1.0.4"; sha256="11x9af3j008kxxsy151894ph0lwrkzxq78z6bvwzwqzdqlsvnv3f"; depends=[BiocInstaller curl devtools httr withr]; };
+  anyflights = derive2 { name="anyflights"; version="0.1.0"; sha256="14mmzyhm8nz2xjs7bfyihgvy0an01lpv6hn9dxcqvbcsc7vfmigs"; depends=[dplyr httr lubridate RCurl readr tibble]; };
   anytime = derive2 { name="anytime"; version="0.3.1"; sha256="1ibpmdq8i9ch06484ql0sdwfrs6smz40qnnw523pb0ryly6q9h16"; depends=[BH RApiDatetime Rcpp]; };
   aod = derive2 { name="aod"; version="1.3"; sha256="1a6xs5d5289w69xd2salsxwikjjhjzvsnplqrq78b1sr6kzfyxz3"; depends=[]; };
-  aods3 = derive2 { name="aods3"; version="0.4-1"; sha256="074c16wmgd1vc2yvwx1y84bg55hvmm5yi8zgpwh51jcsbqlhbpgn"; depends=[boot lme4]; };
+  aods3 = derive2 { name="aods3"; version="0.4-1.1"; sha256="1kdmgzd5nkzm0awdjls6fc8p9hxsph9ha9k1jxbppdi4i6f0i7rv"; depends=[boot lme4]; };
   aoos = derive2 { name="aoos"; version="0.5.0"; sha256="0y92vs27i0mkpjdclqzq4j9g1axkymhi3v8xp1v6hazh35yzjkfj"; depends=[magrittr roxygen2]; };
   aop = derive2 { name="aop"; version="1.0.0"; sha256="1i3mixiwcvqygbcvj6f9vm223plmydzmixpy6nhis2zv9d90vakd"; depends=[ggplot2 graph igraph plyr Rgraphviz rjson]; };
   aoristic = derive2 { name="aoristic"; version="0.6"; sha256="0b9h2l59vvrvbjjwwb43j74frvwa8lsj4x5kwhwpsfjfch1yqwjl"; depends=[classInt ggplot2 GISTools lubridate maptools MASS plotKML RColorBrewer reshape2 rgdal sp spatstat]; };
   apTreeshape = derive2 { name="apTreeshape"; version="1.5-0"; sha256="0mnydk157557pnkjvcadlghn5d8w9kxas4kwz4y4w21xg7z1jrig"; depends=[ape coda cubature pbapply quantreg]; };
-  apa = derive2 { name="apa"; version="0.2.0"; sha256="1f9c8m5z8j7mbmbh61vcs680ya1zq5spwqs90zhajaw5fhvlg8km"; depends=[dplyr magrittr purrr rmarkdown stringr]; };
-  apaTables = derive2 { name="apaTables"; version="2.0.4"; sha256="1msb8aygzbcggdcifmcjpgcpnscvr6fq2ib5afff1vzbas9hjrs3"; depends=[boot broom car dplyr tibble]; };
+  apa = derive2 { name="apa"; version="0.3.0"; sha256="0bpg2nf6838mb2apj2wqi1gbn3zbm7lsixykgkzr539rcdjfdggd"; depends=[dplyr magrittr purrr rmarkdown stringr]; };
+  apaTables = derive2 { name="apaTables"; version="2.0.5"; sha256="0h986jqdl65fd33gfa433ik77r6lm9zrq75qfk5r8xsdgzb4wgva"; depends=[boot broom car dplyr tibble]; };
   apaText = derive2 { name="apaText"; version="0.1.1"; sha256="1r217k60w027i63nbj24b1rm37m4qf7a6iirc941s945babkxcmb"; depends=[dplyr]; };
   apc = derive2 { name="apc"; version="1.3"; sha256="1hgkqkvry9is8kjk2w46k637sig7fdznnc75wbrc8bq1hbrmf785"; depends=[lattice]; };
   apcluster = derive2 { name="apcluster"; version="1.4.7"; sha256="188hdfmwjjx3aic599nwmkzjqm9j9jighi5bly6qd43c1vj6ih2s"; depends=[Matrix Rcpp]; };
   apdesign = derive2 { name="apdesign"; version="1.0.0"; sha256="041zyd7ih9nnj92jj9vb9ya1ij9lmj1dzx64q74vyiadw1ix5l66"; depends=[Matrix]; };
-  ape = derive2 { name="ape"; version="5.1"; sha256="0vm2065993wf4hdqarxqykhfz9aaj0rrb98alhkq4qw1d2kdrmdp"; depends=[lattice nlme Rcpp]; };
+  ape = derive2 { name="ape"; version="5.2"; sha256="05b4yka5cirdgxd4d7iiaqvr428pk3j6n9q6dvg5j38kdj2h5sr7"; depends=[lattice nlme Rcpp]; };
   apercu = derive2 { name="apercu"; version="0.2.3"; sha256="0w9hi8pdjb3nschh4cy387q67jxhkl2bn9vir949rsl831x4cs1j"; depends=[pls]; };
   apex = derive2 { name="apex"; version="1.0.3"; sha256="157i67yvb9xqlhzcgkxj7n5lq65svxs82z38dv2c0k8p4krjl1pd"; depends=[adegenet ape phangorn]; };
-  aphid = derive2 { name="aphid"; version="1.1.0"; sha256="0mf2v7b915hpasic2yqxi0g5fcrwac4d1ycikwzcd9hb9qngcb0n"; depends=[kmer openssl Rcpp]; };
+  aphid = derive2 { name="aphid"; version="1.3.0"; sha256="13h5vwxrw74drw8ai8y0i3c20kdhbybaa3zyplrnlsa2yzzdhqa2"; depends=[kmer openssl Rcpp]; };
   aplore3 = derive2 { name="aplore3"; version="0.9"; sha256="0af6klscsxvh4amp519b6r41bzysf61p040fj4l5706bbya1arhw"; depends=[]; };
   aplpack = derive2 { name="aplpack"; version="1.3.2"; sha256="14vwzzshsgkw6gxwnnf6h9fixnwp3g8pd3rv6qjr0y8gis1lmjbg"; depends=[]; };
-  apmsWAPP = derive2 { name="apmsWAPP"; version="1.0"; sha256="1azgif06dsbadwlvv9nqs8vwixp6balrrbpj62khzmv1jvqr4072"; depends=[Biobase DESeq edgeR genefilter gtools multtest seqinr]; };
+  apmsWAPP = derive2 { name="apmsWAPP"; version="1.0"; sha256="1azgif06dsbadwlvv9nqs8vwixp6balrrbpj62khzmv1jvqr4072"; depends=[aroma_light Biobase DESeq edgeR genefilter gtools multtest seqinr]; };
   apng = derive2 { name="apng"; version="1.0"; sha256="13hvr1w566anrhdicaqwqjgfq2lk3zkn5gcfgy8zazjnad4vy07y"; depends=[bitops]; };
   appell = derive2 { name="appell"; version="0.0-4"; sha256="0g7pzhxqgscnyf07xycbrpyimp1z1hljgcr3nqigpx09w7zi5wlw"; depends=[]; };
   apple = derive2 { name="apple"; version="0.3"; sha256="194z2f6hwdjjxdkjwlmfhpfp26p9yp3gparklhdbb6zlb4a9nnhz"; depends=[MASS]; };
   appnn = derive2 { name="appnn"; version="1.0-0"; sha256="0wkpr6lcd68wlzk6n622ab7sd99l837073czn4k56hw8bw9v68j3"; depends=[]; };
-  approximator = derive2 { name="approximator"; version="1.2-6"; sha256="165qvx5946wkv1qsgbmjhmwvik7m23r1vbpnp7claylflgj1ycnm"; depends=[emulator]; };
+  approximator = derive2 { name="approximator"; version="1.2-7"; sha256="0smqjdla9mvzy164nsb0pw0sgal3w2wnyhqidp74h0smyczrr1zw"; depends=[emulator mvtnorm]; };
   approxmatch = derive2 { name="approxmatch"; version="1.0"; sha256="1z1lrbfvm380p2az88hrxr3f2cgbv2h70wzm99vi9a2dmh0pl7qy"; depends=[]; };
   aprean3 = derive2 { name="aprean3"; version="1.0.1"; sha256="17rnq02sncl6rzwyln10200s43b8z1s2j0kdi9kgcb6qr51v12rv"; depends=[]; };
   apricom = derive2 { name="apricom"; version="1.0.0"; sha256="1gyd1yln14cn0iswj7sjs4hav6j6d4f3ncps4gqbci5fwha5blcr"; depends=[logistf penalized rms shrink]; };
@@ -4331,7 +4507,7 @@ in with self; {
   apt = derive2 { name="apt"; version="2.5"; sha256="1y18bqnnxy5p0xx9gbfrnrzq3nlhw3psl5zlibrw6lfhb8lxd4mk"; depends=[car copula erer gWidgets urca]; };
   aptg = derive2 { name="aptg"; version="0.1.0"; sha256="06z8041h1k9v0ymd7azn11xzhqxb8lda4r7nyg51h8z3i8mpq1ba"; depends=[ape brranching phytools taxize xml2]; };
   aqfig = derive2 { name="aqfig"; version="0.8"; sha256="0ha0jb5ag3zx6v7c63lsm81snslzb8y8g565mxjmf7vxpcmzzqsi"; depends=[geoR]; };
-  aqp = derive2 { name="aqp"; version="1.16"; sha256="11ksjvvwazan2xk535ygrk8qs66ny6fywfgw2mpy8kv2637l9pay"; depends=[cluster digest Hmisc lattice MASS plotrix plyr RColorBrewer reshape scales sp stringr]; };
+  aqp = derive2 { name="aqp"; version="1.16-3"; sha256="16b7yshsi5cwd8spvjmlnnnyvcvkxjcsjkwxizpxjwzy3fdkc4g6"; depends=[cluster digest Hmisc lattice MASS plotrix plyr RColorBrewer reshape scales sp stringr]; };
   aqr = derive2 { name="aqr"; version="0.4"; sha256="04frgil3nbxsww66r9x0c6f308pzqr1970prp20bdv9qm3ym5axw"; depends=[RCurl xts]; };
   arabicStemR = derive2 { name="arabicStemR"; version="1.2"; sha256="1vflynbi7aln7x2p4jg9gsvfrxn4v6qkb4wbrzxmj561lqy9fcay"; depends=[]; };
   arc = derive2 { name="arc"; version="1.2"; sha256="1advs0aqxh84c5n9akww8cdafh7npgaibrb42wncwhv9nfi7wy1v"; depends=[arules discretization Matrix R_utils]; };
@@ -4339,16 +4515,18 @@ in with self; {
   archetypes = derive2 { name="archetypes"; version="2.2-0"; sha256="1djzlnl1pjb0ndgpfj905kf9kpgf9yizrcvh4i1p6f043qiy0axf"; depends=[modeltools nnls]; };
   archiDART = derive2 { name="archiDART"; version="3.2"; sha256="08jam0nbqvrgrxjqj24k7f0dybyi935w977yi1qk34q1p48462ph"; depends=[rgl sp XML]; };
   archivist = derive2 { name="archivist"; version="2.3.1"; sha256="04f1f9fczibda2a4wivmgwzh5p9xblm9hk8wkgd6xqrvxgv5z8mn"; depends=[DBI digest flock httr lubridate magrittr RCurl RSQLite]; };
-  archivist_github = derive2 { name="archivist.github"; version="0.2.2"; sha256="04xb2i47y12ic87gb2l30bldil0505h7s9601hq0afjg3npx6jq7"; depends=[archivist digest git2r httr jsonlite]; };
+  archivist_github = derive2 { name="archivist.github"; version="0.2.6"; sha256="092fzi505vx9xbk41m86d0isxna42iflp7q2kjiqa6z1ccvim2yx"; depends=[archivist digest git2r httr jsonlite]; };
   areaplot = derive2 { name="areaplot"; version="1.2-0"; sha256="0xzfgbnzqsvnq46nsxwyqrwldbaqns3h5np0f5wxpjda9cy2rna1"; depends=[]; };
+  arena2r = derive2 { name="arena2r"; version="1.0.0"; sha256="14zjpglp389pldi436935fz6mgi4jdgfii1m035nsvihrms9gqkh"; depends=[dplyr ggplot2 magrittr purrr rlang shiny shinyBS shinydashboard shinyjs tidyr]; };
   arf3DS4 = derive2 { name="arf3DS4"; version="2.5-10"; sha256="12cbrk57c9m7fj1x7nfmcj1vp28wj0wymsjdz8ylxhm3jblbgmxc"; depends=[corpcor]; };
-  arfima = derive2 { name="arfima"; version="1.6-7"; sha256="0wajd15lbzbc62v8kclnp0fbppnm7vy2zxrsd5njx5sswvkfx5v3"; depends=[ltsa]; };
+  arfima = derive2 { name="arfima"; version="1.6-8"; sha256="0ym86wzwdlxrx987ibaspqmjq6i3j5cx3w04dlia5js1siyq9clp"; depends=[ltsa]; };
   argon2 = derive2 { name="argon2"; version="0.2-0"; sha256="0kqn06rpb39jlzizjlnc5c44mfic8llrshxn7ljgmyj35lbqwxqh"; depends=[]; };
   argosfilter = derive2 { name="argosfilter"; version="0.63"; sha256="0rrc2f28hla0azw90a5gk3zj72vxhm1b6yy8ani7r78yyfhgm9ig"; depends=[]; };
   argparse = derive2 { name="argparse"; version="1.1.1"; sha256="0fzrbj87b274vf96azdnsjxk2nf45d5wy58vzmlah4b4h7q4j524"; depends=[findpython getopt jsonlite proto]; };
   argparser = derive2 { name="argparser"; version="0.4"; sha256="0s1wxshx4jk69wfxhycx973q6y8cmqrfymyjklhq1i8xrj0kmmx9"; depends=[]; };
   ari = derive2 { name="ari"; version="0.1.0"; sha256="05pva8jp7dhl46dm1fha6f8mavrs76a6c491fq3mavly8qcbgx44"; depends=[aws_polly progress purrr rmarkdown rvest tuneR webshot xml2]; };
   aricode = derive2 { name="aricode"; version="0.1.1"; sha256="0c9k6bp0zdm4l28ga19x8v30x3zw0fbcf7wicnn15xc516glfb2j"; depends=[Matrix Rcpp]; };
+  arkdb = derive2 { name="arkdb"; version="0.0.4"; sha256="0flcpka5s26gnf7kh1c76ak832h4iyh0012a1w0d805j5dhf67z6"; depends=[DBI progress]; };
   arm = derive2 { name="arm"; version="1.10-1"; sha256="0vvp90jygajd6ydky57z66wqjq9msfbl88irj5jbsray574mh4bg"; depends=[abind coda lme4 MASS Matrix nlme]; };
   arnie = derive2 { name="arnie"; version="0.1.2"; sha256="14xkgyfn9zvkbgram15w7qzqc5pl1a8ig66cif7a79najrgd914r"; depends=[]; };
   aroma_affymetrix = derive2 { name="aroma.affymetrix"; version="3.1.1"; sha256="1x2lwdabvh7cjdy57jrnbdb7s9vxs18zyvfzwavi2pgldqz6v2aw"; depends=[aroma_apd aroma_core future listenv MASS matrixStats R_cache R_devices R_filesets R_methodsS3 R_oo R_utils]; };
@@ -4356,19 +4534,19 @@ in with self; {
   aroma_cn = derive2 { name="aroma.cn"; version="1.6.1"; sha256="1d9g81b12a3m03wrvb3cvg33fjybgiabpxhci2y2rr6diay42pmr"; depends=[aroma_core matrixStats PSCBS R_cache R_filesets R_methodsS3 R_oo R_utils]; };
   aroma_core = derive2 { name="aroma.core"; version="3.1.3"; sha256="0zikic3hqfn00kgb0078paikz4bdcqq0qygvl4xbvq48868wcz1q"; depends=[future listenv matrixStats PSCBS R_cache R_devices R_filesets R_methodsS3 R_oo R_rsp R_utils RColorBrewer]; };
   arrApply = derive2 { name="arrApply"; version="2.0.1"; sha256="007fsqgb9bsr4mscljhp37dvrk7cv6nrb7y28w8kc7mxvgdq29wg"; depends=[Rcpp RcppArmadillo]; };
-  arrangements = derive2 { name="arrangements"; version="1.0.2"; sha256="0vqxx0pzvvqnbklpxrcq7d5ppicwbwk3gb2846in0gqjhn4ya4g1"; depends=[gmp R6]; };
+  arrangements = derive2 { name="arrangements"; version="1.1.4"; sha256="04l63br7a93qgiaglzmxpjw03y5p05jihlbbshy9cb7lg3rdld6m"; depends=[gmp R6]; };
   arrayhelpers = derive2 { name="arrayhelpers"; version="1.0-20160527"; sha256="1ib91hpg6xgy0jr4sb8ib19x0v4f5n96lak0qm0z5vksawgcnp1l"; depends=[svUnit]; };
-  ars = derive2 { name="ars"; version="0.5"; sha256="0m63ljb6b97kmsnmh2z5phmh24d60iddgz46i6ic4rirshq7cpaz"; depends=[]; };
-  arsenal = derive2 { name="arsenal"; version="1.2.0"; sha256="1glh8vyms5hcplzzn5n6fynr8jyryy65xb2y9lf6nv7kziwqr5fk"; depends=[testthat]; };
+  ars = derive2 { name="ars"; version="0.6"; sha256="0zs1rk3i7pc9wcvxrvjcls194mfbvmkz7cb6pwd1cm3fzjwsyxsp"; depends=[]; };
+  arsenal = derive2 { name="arsenal"; version="1.4.0"; sha256="1hd1nx5nzpswi5903vkkhf4ap4pk5gjxj45xc8z0wngp4xrjv4a4"; depends=[testthat]; };
   artfima = derive2 { name="artfima"; version="1.5"; sha256="1nqsq9fsqk9kag9n7i2r9yvf578nkdfrkkv7qy8650prka0jca2p"; depends=[gsl ltsa]; };
   arules = derive2 { name="arules"; version="1.6-1"; sha256="0glfqgxr87900kigmkby2ff7qrjvd6aq595q85y056i5ckjcp615"; depends=[Matrix]; };
   arulesCBA = derive2 { name="arulesCBA"; version="1.1.3-1"; sha256="0k41m966m2x8xjzvpy6xn4whn9l2dpvidyh39kmhyvya87ibhyg8"; depends=[arules discretization Matrix testthat]; };
   arulesNBMiner = derive2 { name="arulesNBMiner"; version="0.1-5"; sha256="1q4sx6c9637kc927d0ylmrh29cmn4mv5jxxpl09yaclzfihjlk9a"; depends=[arules rJava]; };
-  arulesSequences = derive2 { name="arulesSequences"; version="0.2-19"; sha256="1cncvrf7za38b3vdwbzy4yrbakj7jbpxrl1jg6bvjnlkymiajavx"; depends=[arules]; };
+  arulesSequences = derive2 { name="arulesSequences"; version="0.2-20"; sha256="0qgsf1wbdw4yqcnbczi2kcvb6vg9f4gy403qds1qh4129yrjyvy9"; depends=[arules]; };
   arulesViz = derive2 { name="arulesViz"; version="1.3-1"; sha256="0lz6dl7ywzbyviib97s48namr6cjjn98anblfpigzaq16zkf2pxl"; depends=[arules colorspace DT igraph plotly scatterplot3d seriation vcd visNetwork]; };
   asVPC = derive2 { name="asVPC"; version="1.0.2"; sha256="07nfwr0lsfpwgfdgzcdn1svw8dnjfni5ga9q77yjd1bj0wf76ci2"; depends=[ggplot2 plyr]; };
   asaur = derive2 { name="asaur"; version="0.50"; sha256="0c1rgic76w3i2xhna7i52lyc0p01s5b1mxyn55gqw6i19v9mq0b3"; depends=[]; };
-  asbio = derive2 { name="asbio"; version="1.5"; sha256="0p54a9x54jg81hd86br6b3dg3sr9kzl9rmnrh7x3m6bkinzc780c"; depends=[deSolve lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; };
+  asbio = derive2 { name="asbio"; version="1.5-3"; sha256="0k4cyivh08p9psp0z07nqa04i7xcqf4gh7x0vfk17rvycywksbhy"; depends=[deSolve lattice multcompView mvtnorm pixmap plotrix scatterplot3d]; };
   ascii = derive2 { name="ascii"; version="2.1"; sha256="19dfbp7k4bjxjn8wdzhbmz7g3za6gn8vcnd5qkm4dz7gg1fg7b8p"; depends=[]; };
   asciiSetupReader = derive2 { name="asciiSetupReader"; version="1.4.0"; sha256="0pq23ncwlndhzw4qfvzcv9nh74fq6hh9k6w96xhxx69ajy9zd2ys"; depends=[data_table haven readr stringr zoo]; };
   asciiruler = derive2 { name="asciiruler"; version="0.2"; sha256="0xhkbsy9dypk09avazgxczyfkh3rhdxhwci688dw1lxnhxv1hj24"; depends=[stringr]; };
@@ -4376,9 +4554,9 @@ in with self; {
   asdreader = derive2 { name="asdreader"; version="0.1-3"; sha256="15a922aw0v5w4hrha03xifx8cpifcc773gambgwqq6i5nz08ya26"; depends=[]; };
   ash = derive2 { name="ash"; version="1.0-15"; sha256="1ay2a2agdmiz7zzvn26mli0x0iwk09g5pp4yy1r23knhkp1pn2lb"; depends=[]; };
   ashr = derive2 { name="ashr"; version="2.2-7"; sha256="1bgkzab7f7fqi259vxrpkxq8yzhh1sl3mqdzc73dk54c5849b2pz"; depends=[assertthat doParallel etrunct foreach Matrix pscl Rcpp SQUAREM truncnorm]; };
-  asht = derive2 { name="asht"; version="0.9.3"; sha256="075gzxly8sqkbwnznxcr4z3zs1qvlyl8c4ishgxk035ik1w6p16n"; depends=[bpcp coin exact2x2 exactci perm ssanv]; };
+  asht = derive2 { name="asht"; version="0.9.4"; sha256="1aq384vgf26ig3isyp99z09glcjhl2qd43kp8qdcwk75dcrmxd7z"; depends=[bpcp coin exact2x2 exactci perm ssanv]; };
   aslib = derive2 { name="aslib"; version="0.1"; sha256="0dkb6bb6dqavjklbciqxqhi3fdqib9asdnhiap2gp9b9wfnkyq7k"; depends=[BatchExperiments BatchJobs BBmisc checkmate corrplot ggplot2 llama mlr parallelMap ParamHelpers plyr reshape2 RWeka stringr yaml]; };
-  asnipe = derive2 { name="asnipe"; version="1.1.9"; sha256="0r6hajdvasvik2ij58xm5kvlcz2gqzgqbvw0ypghrp0qkfqxkrla"; depends=[MASS Matrix]; };
+  asnipe = derive2 { name="asnipe"; version="1.1.10"; sha256="1n53aqajra3rp202jz1xciw7nppicxkpiq4ybay768n3mxlvlhjr"; depends=[MASS Matrix]; };
   aspace = derive2 { name="aspace"; version="3.2"; sha256="1g51mrzb6amafky2kg2mx63g6n327f505ndhna6s488xlsr1sl49"; depends=[Hmisc shapefiles splancs]; };
   aspect = derive2 { name="aspect"; version="1.0-5"; sha256="0pbc0daxw20xcbgqyyd5gbs9kmbaf2dq8ajllx0mnfwdcak9jfgj"; depends=[]; };
   aspi = derive2 { name="aspi"; version="0.2.0"; sha256="0rhvxw243vvdv3hxa6pi343gcjc2cbxq1jzqirl9k1l4i3897l87"; depends=[]; };
@@ -4386,14 +4564,14 @@ in with self; {
   assertable = derive2 { name="assertable"; version="0.2.4"; sha256="1d1mc5k9jwn2h5bny3bpkwy10kfz5qlp03z12z9401v47q12d61i"; depends=[data_table]; };
   assertive = derive2 { name="assertive"; version="0.3-5"; sha256="0blbbhlxcb5ffdxqxi62xs33ljiawh6s22a0pyvbbh79jf46rzr3"; depends=[assertive_base assertive_code assertive_data assertive_data_uk assertive_data_us assertive_datetimes assertive_files assertive_matrices assertive_models assertive_numbers assertive_properties assertive_reflection assertive_sets assertive_strings assertive_types knitr]; };
   assertive_base = derive2 { name="assertive.base"; version="0.0-7"; sha256="1xs3ysvj0z57c58jw57pckq2rynia6ks4rmjmc02alczhk54wbgh"; depends=[]; };
-  assertive_code = derive2 { name="assertive.code"; version="0.0-1"; sha256="0drdrc9ljznkz52lvpwx0mvrghl0wf6dffzc3msz8lnvraxmanyw"; depends=[assertive_base assertive_properties assertive_types]; };
+  assertive_code = derive2 { name="assertive.code"; version="0.0-3"; sha256="1qhbp668zfvhqs8avkhg9amp4zyazz6dsy4fc6kpdmw3sv8yi07g"; depends=[assertive_base assertive_properties assertive_types]; };
   assertive_data = derive2 { name="assertive.data"; version="0.0-1"; sha256="0pjw7rf76d99awd8i4krmhbyks39lx89c9pb4j49nmz3w6x3z233"; depends=[assertive_base assertive_strings]; };
-  assertive_data_uk = derive2 { name="assertive.data.uk"; version="0.0-1"; sha256="0z2hpvfl34zzy9sncmihcj1ir5nnm9d05j7ip7j83by2pfwsjdhf"; depends=[assertive_base assertive_strings]; };
-  assertive_data_us = derive2 { name="assertive.data.us"; version="0.0-1"; sha256="0nfwfkaczbmxaj4bpyibcvsypigkn5j2syn2wb4d2grm7virk9bk"; depends=[assertive_base assertive_strings]; };
+  assertive_data_uk = derive2 { name="assertive.data.uk"; version="0.0-2"; sha256="1fzjvhwp7mwkqqix29khvs6zcrc82n6j4czvzzb473vyjyvdlj5b"; depends=[assertive_base assertive_strings]; };
+  assertive_data_us = derive2 { name="assertive.data.us"; version="0.0-2"; sha256="1bgspn0sccmp9z7s7djvdvprgxlyc5vrxznp4zfjb79kwvgn83hq"; depends=[assertive_base assertive_strings]; };
   assertive_datetimes = derive2 { name="assertive.datetimes"; version="0.0-2"; sha256="00a98fx8p3pr3ckayh8wmxmm4rz01s67wah9697m92yci6pv3m78"; depends=[assertive_base assertive_types]; };
   assertive_files = derive2 { name="assertive.files"; version="0.0-2"; sha256="02pfz8j5vwcj5kl6zca46894li7lxwnlrr29j922f14ay6kdssmy"; depends=[assertive_base assertive_numbers]; };
   assertive_matrices = derive2 { name="assertive.matrices"; version="0.0-1"; sha256="1vk0i860r87rc5x0navai8xx9ixqyp96waxlk6j5p8y8hrpiyyif"; depends=[assertive_base]; };
-  assertive_models = derive2 { name="assertive.models"; version="0.0-1"; sha256="1pkyssavld57njmv545bfa3a7dmyrgpsvr9vdhqmrmcpc55w89cj"; depends=[assertive_base]; };
+  assertive_models = derive2 { name="assertive.models"; version="0.0-2"; sha256="0bn4j4v5qvb2d672cgri61p8d9v258pmz35y3lvm6b9mdxwdi9mr"; depends=[assertive_base]; };
   assertive_numbers = derive2 { name="assertive.numbers"; version="0.0-2"; sha256="0jc3ss64j4m7bjydhagwwmka5n7c72vpw4kfcch0m5jvkq5qrqds"; depends=[assertive_base]; };
   assertive_properties = derive2 { name="assertive.properties"; version="0.0-4"; sha256="0sqs54acs9qk9kvm32rxzfbzxz1l8mjahpfnw7r30z2brgz661jw"; depends=[assertive_base]; };
   assertive_reflection = derive2 { name="assertive.reflection"; version="0.0-4"; sha256="19zmsbn00crfqm0kwd9ys5gv87xs3gi6wmlikrz9xiwzm7hp4dhj"; depends=[assertive_base]; };
@@ -4406,7 +4584,7 @@ in with self; {
   assist = derive2 { name="assist"; version="3.1.3"; sha256="0ngnn75iid5r014fcly29zhcfpqkqq24znncc3jdanbhdmfyybyz"; depends=[lattice nlme]; };
   assocInd = derive2 { name="assocInd"; version="1.0.1"; sha256="16yzgvlqbapjhvzm5nw8vfrhh8mp9llnhck4bpgmszyrh93z1ha5"; depends=[]; };
   assortnet = derive2 { name="assortnet"; version="0.12"; sha256="1vyzrb8vsi9pcdn6jd83k77bg0q2a3dwdvlnmxnshqiif2pakb8m"; depends=[]; };
-  aster = derive2 { name="aster"; version="0.9.1.1"; sha256="12zn3wcx0n37fbnwwcz517libsgkbfphwbr4m68zba4craqhh5mi"; depends=[trust]; };
+  aster = derive2 { name="aster"; version="1.0-2"; sha256="1yxa8b19g1acvn7mcj6l53x0cvb66dmjwrpmxb2y6k8da95hc9lp"; depends=[trust]; };
   aster2 = derive2 { name="aster2"; version="0.3"; sha256="17d200sg0vn1fj6lb480dhszm70q6ipjldilb3x0jp72hiczakk9"; depends=[Matrix]; };
   astro = derive2 { name="astro"; version="1.2"; sha256="1c7zrycgj2n8gz50m94ys1dspilds91s1b2pwaq6df1va17pznby"; depends=[MASS plotrix]; };
   astroFns = derive2 { name="astroFns"; version="4.1-0"; sha256="0g5q0y067xf1ah91b4lg8mr9imj0d6lgig7gbj3b69fn335k363g"; depends=[]; };
@@ -4416,53 +4594,60 @@ in with self; {
   astsa = derive2 { name="astsa"; version="1.8"; sha256="023nk6chyy79scjzhv42px5cpym7rnm1c55ylcslyjdmlr5i6afk"; depends=[]; };
   asus = derive2 { name="asus"; version="1.0.0"; sha256="16hp8xajb631a5amm1cvhzq8z4cwh1vjiavv3n11fzpxyskhmfrb"; depends=[rwt wavethresh]; };
   asymLD = derive2 { name="asymLD"; version="0.1"; sha256="1q05pxwn6arpalspgf2m0cym4ivnwyv94i58k9kaihd37kvm5lgc"; depends=[]; };
-  asymmetry = derive2 { name="asymmetry"; version="1.2.5"; sha256="0wsmarmij4crhv5wr4mqibsf787cy7fmmp4xrclsb3gm3g1xwvzz"; depends=[gplots rJava smacof]; };
+  asymmetry = derive2 { name="asymmetry"; version="2.0"; sha256="02l9sg4f7i0mxzh4p7r930fswy4b04dv0icm7f2h1rldsnswh2sk"; depends=[gplots smacof]; };
   asympTest = derive2 { name="asympTest"; version="0.1.4"; sha256="02l07psiy1888zx86j2r1l5lznz47wdmzbh39pd2nbj8r9i80szr"; depends=[]; };
   asypow = derive2 { name="asypow"; version="2015.6.25"; sha256="0il38djkmw5ka7czpalmhq6yycx7flpdpgbd7p5nx52rsjdv49mj"; depends=[]; };
+  atable = derive2 { name="atable"; version="0.1.0"; sha256="0q3vy42a09sayb69f5fihfrkrsp3cz4380hb9f35ggkyi9v2d7nk"; depends=[DescTools doBy effsize Hmisc plyr reshape2 settings]; };
   atlantistools = derive2 { name="atlantistools"; version="0.4.3"; sha256="06rb0c4ralx55mdlqwpjzim0inxif4cdi9732v4h1ll8jhlm5v7d"; depends=[circlize dplyr ggplot2 gridExtra lazyeval magrittr proj4 purrr RColorBrewer RNetCDF rvest scales stringr tibble tidyr xml2]; };
-  atlas = derive2 { name="atlas"; version="0.6.0"; sha256="0phpninwqqibafq88s3kwlv84506l2jxaz0hvcwd5hknvydcf6ib"; depends=[httr testthat]; };
+  atlas = derive2 { name="atlas"; version="1.0.0"; sha256="02wm22j40llmdi6z3rzgbc5fpkzmjfq0xar33bypvj1dx1zxygnd"; depends=[httr testthat]; };
   atmcmc = derive2 { name="atmcmc"; version="1.0"; sha256="05k69b5wlysz3kh0yiqvshgvr0nyz34zkvn6bjs30cwz7s9j21pn"; depends=[]; };
+  atmopt = derive2 { name="atmopt"; version="0.1.0"; sha256="1h79ngq1236gz4w29fs3nj46a3m1x8a28z3xnhc6wn3a46cf8zzi"; depends=[DoE_base gtools hierNet]; };
   atsd = derive2 { name="atsd"; version="1.2.0"; sha256="0jan8r5f2r3l2xpdf9rrv4smkr2l645rfdgdfjb1xa54jd3pqvqs"; depends=[httr RCurl]; };
   attempt = derive2 { name="attempt"; version="0.2.1"; sha256="0366sq1mf3d0amf6yfa42gw1gwwr9rbbqnqvr8hai1bfl672zkcp"; depends=[rlang]; };
   attrCUSUM = derive2 { name="attrCUSUM"; version="0.1.0"; sha256="113y40v9hyvnvvzvyqg81n0n1h84pj4zph5q8p0vc0384hw00544"; depends=[Rcpp RcppArmadillo]; };
   attribrisk = derive2 { name="attribrisk"; version="0.1"; sha256="1zqx53mxz2hh9jyanf3jkadgpj44jbqrk4p13fas91zvhpw9pn5s"; depends=[boot survival]; };
-  atus = derive2 { name="atus"; version="0.1"; sha256="15arijdfyci43k0a32zc8qmm73fmzrr3ghhxw0kgipdr3w5xcmz3"; depends=[]; };
+  atus = derive2 { name="atus"; version="0.2"; sha256="1i67rx8p5v4shgbfcym4lbnlw55xx7w2fdzhgsgjjyfpwbpm7h4h"; depends=[]; };
   auRoc = derive2 { name="auRoc"; version="0.1-0"; sha256="1ijk127p6g5mzc7b4b9lnjnfzvklz3g8w6bckrdahlw7djd9mgz1"; depends=[coda MBESS ProbYX rjags]; };
   aucm = derive2 { name="aucm"; version="2018.1-24"; sha256="0x10dawlwxqywjl7mxc2gpp2r4wnd7pb6n80xlrb9yywm7zbb6x2"; depends=[kyotil]; };
   auctestr = derive2 { name="auctestr"; version="1.0.0"; sha256="15b1x0c9yhl91gir7jmivp8vxzc8q7wvb0mgam9454avc6l29x4y"; depends=[dplyr tidyr]; };
   audio = derive2 { name="audio"; version="0.1-5.1"; sha256="1imh2l43n1cvwzzby598qn59rsm5262snril6b98hyih7mw7fyad"; depends=[]; };
   audiolyzR = derive2 { name="audiolyzR"; version="0.4-9"; sha256="09jsrjy15vcn6da0kgk06ghayyrf3s853gqv8qdawg745ky2hbgi"; depends=[hexbin plotrix RJSONIO]; };
   audit = derive2 { name="audit"; version="0.1-1"; sha256="0hrcdcwda5c0snskrychiyfjcbnymkcl2x43bapb6inw9y8989qv"; depends=[]; };
-  auditor = derive2 { name="auditor"; version="0.2.1"; sha256="0kpadjzfnahrbryn2zh0zxb93wivlbnznrgad3025mf1qabm3xnr"; depends=[car factoextra fdrtool GGally ggplot2 ggrepel hnp plotROC ROCR tseries]; };
-  augSIMEX = derive2 { name="augSIMEX"; version="2.0"; sha256="0j0izfk1hdzzn1s7gd64q56x8ws8nvpzh7a8d13gzwxi9dhvkzvf"; depends=[MASS Rcpp rootSolve]; };
-  auk = derive2 { name="auk"; version="0.2.1"; sha256="18vqvjksnllbkwfskiv8cv0dbw92nzkxwb0rj14sxxw8y55hybyy"; depends=[assertthat countrycode dplyr rlang stringi stringr tidyr]; };
+  auditor = derive2 { name="auditor"; version="0.3.1"; sha256="1ndd5a5264b91qaw0qj9rwjvhn9lgw7y5dirjqlzkib6q9mcyanq"; depends=[car factoextra fdrtool GGally ggplot2 ggrepel gridExtra hnp plotROC ROCR tseries]; };
+  augSIMEX = derive2 { name="augSIMEX"; version="3.0"; sha256="0fjs77v6hrrzw683v6bmgiz787jfcn84nfjlkfp3vad8v2fqa84c"; depends=[Formula MASS Rcpp rootSolve]; };
+  augmentedRCBD = derive2 { name="augmentedRCBD"; version="0.1.0"; sha256="0kxhrz6s2njfj9b20mqmlgs7hy2227vrj00048cf8447l3y2a9lj"; depends=[dplyr emmeans flextable ggplot2 moments multcomp multcompView officer Rdpack reshape2 stringi]; };
+  auk = derive2 { name="auk"; version="0.3.0"; sha256="0sxc18w377f86f096g06xw8a8iwfpzxc5xwn4337wycns3xwd8r4"; depends=[assertthat countrycode dplyr httr rlang stringi stringr tidyr]; };
   aurelius = derive2 { name="aurelius"; version="0.8.4"; sha256="00bpf9sggvnajpmg3zsdgfjinkb6wbrcf1ris7qfhh1rp5rz4m4m"; depends=[gbm glmnet jsonlite]; };
   auto_pca = derive2 { name="auto.pca"; version="0.3"; sha256="01m2ldpcxzj7fhgmr9wp4ha3gqdyh7l5bkrnw83smcbq5229hsyy"; depends=[plyr psych]; };
   autoBagging = derive2 { name="autoBagging"; version="0.1.0"; sha256="01k44rgkpbbr3m2x360aq0fz2qi7nz036g5dsh2y3jy94rmddbyy"; depends=[abind caret cluster CORElearn e1071 entropy infotheo lsr MASS minerva party rpart xgboost]; };
   autoFRK = derive2 { name="autoFRK"; version="1.0.0"; sha256="10vmgcpj2n5w9g4bjq2g3bz3n3x9b6h35w4qfr13v2sdzp3gz5da"; depends=[fields filehash filehashSQLite filematrix FNN LatticeKrig MASS Rcpp RcppEigen RcppParallel RSpectra spam]; };
+  autocogs = derive2 { name="autocogs"; version="0.1.1"; sha256="0p5z4gnairar1g7fpf3cm7iy5kgx66k8zhkqxx1hjdhjqjqp4w0g"; depends=[broom checkmate diptest dplyr ggplot2 hexbin MASS mclust moments progress tibble]; };
   autoencoder = derive2 { name="autoencoder"; version="1.1"; sha256="0ly1aanayk28nx6yqfhl7d0zm4vg6rfjikf5ibn8zhmkrfyflj1y"; depends=[]; };
   autoimage = derive2 { name="autoimage"; version="2.0"; sha256="102f7wkrglsvdrsmyy79v0w7za5b79sn59czxzhriwrp4mrpdl47"; depends=[fields ggplot2 mapproj maps MBA viridisLite]; };
   automagic = derive2 { name="automagic"; version="0.3"; sha256="0yzv0ianfq217jvz7rba86bcmxh09p513khvq6jk5k7isblvn0qd"; depends=[devtools dplyr formatR githubinstall knitr magrittr pacman purrr remotes yaml]; };
   automap = derive2 { name="automap"; version="1.0-14"; sha256="1190kbmp0x80x0hyifdbblb4ijq79kvrfn9rkp5k6diig4v30n0w"; depends=[gstat lattice reshape sp]; };
+  automl = derive2 { name="automl"; version="1.0.6"; sha256="0g7yki465syazji93z0jx39gg99dynhbm1b18blg493grphk0r7h"; depends=[]; };
   automultinomial = derive2 { name="automultinomial"; version="1.0.0"; sha256="15cxnqaai2dln6jvk7lpfqvlpv5237zn18axp459p5zxcgg0lw88"; depends=[Hmisc igraph MASS Matrix]; };
   autoplotly = derive2 { name="autoplotly"; version="0.1.2"; sha256="0ajzzj9w9f0v9n37liml63hq5xwkqq53lw85p0a2h99n4lg2hdg8"; depends=[ggfortify ggplot2 plotly]; };
   autopls = derive2 { name="autopls"; version="1.3"; sha256="1qf5gk1vsz1p5670w7bgzh3b15wvrx1gy6ih4sivw0vj8bcjxbw9"; depends=[pls]; };
   autoshiny = derive2 { name="autoshiny"; version="0.0.2"; sha256="0s06ynnirgsh19x8qq4020piirkhvjqpvz372syygvlal062y6cn"; depends=[shiny]; };
-  autothresholdr = derive2 { name="autothresholdr"; version="1.2.0"; sha256="09wpyirsqw0s4b5221ksr0v0srrq24c6ca8kr5m4hr4ps728np0p"; depends=[checkmate filesstrings ijtiff magrittr Rcpp]; };
+  autothresholdr = derive2 { name="autothresholdr"; version="1.2.1"; sha256="0jbqadhpmd3fq8i7ncwv98s12wcsrvvgk0dw2qgpg9f2d2k2gnb1"; depends=[checkmate filesstrings ijtiff lattice magrittr Rcpp]; };
   autovarCore = derive2 { name="autovarCore"; version="1.0-4"; sha256="0i5fvx0z2kri0c855q40hd596kfjhmwpp2zw7d7k0xvk2xbcgbiv"; depends=[Amelia jsonlite Rcpp urca vars]; };
-  available = derive2 { name="available"; version="1.0.0"; sha256="0w4i0ajw0p71k717v8hg9d8az08m8yl97w5lly87kli36p7mv30h"; depends=[cli clisymbols crayon desc glue jsonlite memoise purrr SnowballC stringdist tibble tidytext udapi yesno]; };
+  av = derive2 { name="av"; version="0.2"; sha256="0vw6136sh1rgsah10xrcrgrpb6rpf5l8vixs950yq51syxc1y2qc"; depends=[]; };
+  available = derive2 { name="available"; version="1.0.1"; sha256="0bijr3prl1bqkc34yn6g39gh9ig4xxynyglmw7di2l5ivp62rskl"; depends=[cli clisymbols crayon desc glue jsonlite memoise SnowballC stringdist tibble tidytext udapi yesno]; };
   averisk = derive2 { name="averisk"; version="1.0.3"; sha256="02j27d4jxgy2bk5sgxp1xdfyqr321civs99qj0g8cp34gwqk0j3m"; depends=[MASS]; };
-  aws = derive2 { name="aws"; version="1.9-6"; sha256="0mfq44pji0p6d7s1wbwi0f97lsh3f33wnj8fiyimpg9fv8lr4inz"; depends=[awsMethods gsl]; };
+  aws = derive2 { name="aws"; version="2.2-0"; sha256="0kf79jnr3zn02b3bsq68mhhgxm2j10l6z14idvcbh3xiyyfaig5b"; depends=[awsMethods gsl]; };
   aws_alexa = derive2 { name="aws.alexa"; version="0.1.6"; sha256="0c2yl023g2m4kqhhv4nbysjmp103aj3pk17dwyb9nrkpj9qm8zsh"; depends=[aws_signature dplyr httr xml2]; };
   aws_cloudtrail = derive2 { name="aws.cloudtrail"; version="0.1.5"; sha256="0p7qj9ivs14ska11a9qni4n0f8d05c1p126zvlxj9038c9p0y1wx"; depends=[aws_s3 aws_signature httr jsonlite]; };
   aws_comprehend = derive2 { name="aws.comprehend"; version="0.1.2"; sha256="0480ggfdmcv2pkjzmwh40h4nd87qswrpwr6h3j959f9y8zmzfd7n"; depends=[aws_signature httr jsonlite]; };
-  aws_ec2metadata = derive2 { name="aws.ec2metadata"; version="0.1.4"; sha256="08l1gnqn2l6f6rkh21v1my2jp5bbzwnq38swymwl94jbnvnlrasw"; depends=[curl jsonlite]; };
+  aws_ec2metadata = derive2 { name="aws.ec2metadata"; version="0.1.5"; sha256="077vp2djy2y37vkhvadbbaizfkx4qm86fm336idvrv36q8lcrl1v"; depends=[curl jsonlite]; };
   aws_iam = derive2 { name="aws.iam"; version="0.1.7"; sha256="0hag8j5g8rqg39x4f6d8vwwzhz98cx7549xixfl9cxiff7x9sz2c"; depends=[aws_signature httr jsonlite xml2]; };
+  aws_kms = derive2 { name="aws.kms"; version="0.1.2"; sha256="1bg1csdlwgaw928jschq1pxhg1ibrzy2q85vvc2zhlfd6c6xif3d"; depends=[aws_signature base64enc httr jsonlite]; };
   aws_lambda = derive2 { name="aws.lambda"; version="0.1.6"; sha256="16vis596clxn6h9j1k66224ikacsg0f9xrzqi5987nqlzrwskjgk"; depends=[aws_signature base64enc httr jsonlite]; };
   aws_polly = derive2 { name="aws.polly"; version="0.1.2"; sha256="0ij0rbng8q7xfa08p4x1l1lcmskmz3fy2pvln28zxqbs6jbc22rm"; depends=[aws_signature httr jsonlite tuneR]; };
   aws_s3 = derive2 { name="aws.s3"; version="0.3.12"; sha256="1yfi9ihrd0hmzxklc86mf5hcwgzsb5c4p1i402vgpg5mfvcvp3rl"; depends=[aws_signature base64enc digest httr xml2]; };
   aws_ses = derive2 { name="aws.ses"; version="0.1.4"; sha256="13hf4iqhnpkm9rnr7nzwky663vplnkjrgk90zix91cn2fvaspjgp"; depends=[aws_signature httr jsonlite]; };
-  aws_signature = derive2 { name="aws.signature"; version="0.4.1"; sha256="094d0jwg6433bdfkvs3r9mjvg61k78ff4ck0zhgyaz4aivlchm9j"; depends=[base64enc digest]; };
+  aws_signature = derive2 { name="aws.signature"; version="0.4.4"; sha256="18w4m7ald8ira59mrvhppzs0vfafi8xwqn7xrwl3hhsj855nzmyc"; depends=[base64enc digest]; };
   aws_sns = derive2 { name="aws.sns"; version="0.1.7"; sha256="0i8nn5jnykhsjwn4nsqdqbagankjc09zs8and54rkirdigzdny8v"; depends=[aws_signature httr jsonlite xml2]; };
   aws_sqs = derive2 { name="aws.sqs"; version="0.1.10"; sha256="09sh3injb4kfrq5al7hmbnqdn5v5hnjkqqsz86vpi4154435ymdg"; depends=[aws_signature httr jsonlite xml2]; };
   aws_transcribe = derive2 { name="aws.transcribe"; version="0.1.2"; sha256="12qz7j535aqxcvcawj4iqycbcmlba32sdl8qj2cw6rq5rgm55xaz"; depends=[aws_signature httr jsonlite]; };
@@ -4473,10 +4658,12 @@ in with self; {
   b6e6rl = derive2 { name="b6e6rl"; version="1.1"; sha256="17scdskn677vaxx1h2jypqaffvjgczryplg17nr3wigi1x0cxg7a"; depends=[]; };
   bPeaks = derive2 { name="bPeaks"; version="1.2"; sha256="1z6jghcmw0lwv17ms7gdp5zzimaawq3ahbwkxa4062g373592smd"; depends=[]; };
   bReeze = derive2 { name="bReeze"; version="0.4-2"; sha256="04zapsxb4lsi85m9qgrsm49yasf0b8wk0djdpa7xks4hjvmskfhq"; depends=[]; };
-  bWGR = derive2 { name="bWGR"; version="1.5.3"; sha256="0kgl29kmpdbzjhbwv8kdy2lygza06fb90hqr7vwbgyl4fw049k9p"; depends=[Rcpp]; };
+  bWGR = derive2 { name="bWGR"; version="1.5.6"; sha256="1c0f3y30gynvlf70fakhspp91q5fdq9b4hii18i1qq89162qgnd8"; depends=[Rcpp]; };
+  baRcodeR = derive2 { name="baRcodeR"; version="0.1.0"; sha256="0csg696zkbnfryzaayq7vf7zvsfixxqm4mc12f553igza9yyg7vk"; depends=[DT ggplot2 miniUI qrcode shiny]; };
   babar = derive2 { name="babar"; version="1.0"; sha256="13j5klrcnd4dwrgdbxlvwcj56l9mzi4j9ga6jj5i04pgdc6vsfx5"; depends=[]; };
   babel = derive2 { name="babel"; version="0.3-0"; sha256="1iwvx69051yhlxbcl6bypvc3mcih0q8bf3i29r3i79356hp12xqa"; depends=[edgeR]; };
   babynames = derive2 { name="babynames"; version="0.3.0"; sha256="018wyajdkpvcywcvkna57m5sqnsh7i9zq2hqlyb8q93mgyb3ddzm"; depends=[tibble]; };
+  bacistool = derive2 { name="bacistool"; version="0.9.8"; sha256="1yq7d2657l6iyy5v094c9rwphbpyhnijhwvacwhb07k6c6h069wh"; depends=[rjags]; };
   backShift = derive2 { name="backShift"; version="0.1.4.2"; sha256="1nj7mcdpzfzq68qg86rrys752gzw69n99yyb0jzg6r8qrgpcxj49"; depends=[clue ggplot2 igraph MASS matrixcalc mvnmle reshape2]; };
   backblazer = derive2 { name="backblazer"; version="0.1.0"; sha256="020kdydksm0brnxsa00blf5sylxd4hz49wmngk1x1fx43kdlyc41"; depends=[httr jsonlite openssl]; };
   backpipe = derive2 { name="backpipe"; version="0.2.3"; sha256="12k2cv9x8h0b002m9c8g4vj5a7chp4b8jqz377ia0diqw89dydpm"; depends=[]; };
@@ -4488,17 +4675,20 @@ in with self; {
   bagRboostR = derive2 { name="bagRboostR"; version="0.0.2"; sha256="1k9w98p3ad3myzyqhcrc4rsn7196qvhnmk5ddx3fpd1rdvy2dnby"; depends=[randomForest]; };
   bairt = derive2 { name="bairt"; version="0.1.2"; sha256="17nc0lp0bzwshik33v0gq5d6nd2gvm4799b7rfiq089zhnzv90kj"; depends=[coda mvtnorm shiny shinyjs]; };
   baitmet = derive2 { name="baitmet"; version="1.0.1"; sha256="02ydakqr8v41hdnhcsgigwnic8d48qswryg1srb5w1fqdmdglnkl"; depends=[erah HiClimR Rcpp signal XML]; };
-  ballr = derive2 { name="ballr"; version="0.2.0"; sha256="1f5fclmgp0pznahr3ix7xiixqah01jmh2g6fvrqyi6xcin8ynwqc"; depends=[dplyr janitor lubridate magrittr rlang rvest xml2]; };
-  bamboo = derive2 { name="bamboo"; version="0.9.22"; sha256="1fajc4880wkpxjdgh41r2fq95dllpk1irbrkvrrwvb0pf3zbmjsl"; depends=[rscala]; };
-  bamdit = derive2 { name="bamdit"; version="3.1.0"; sha256="148ikj7mly8m6kxs2n4gidi7kb70i3x2vbf9xsllrf0cgvrjccps"; depends=[ggExtra ggplot2 gridExtra MASS R2jags rjags]; };
-  bamlss = derive2 { name="bamlss"; version="1.0-0"; sha256="0wa54f5zyjyplys29cqhrasc6qa8p5znfal2ihp0qhhs46wzsk4y"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm sp survival]; };
+  balance = derive2 { name="balance"; version="0.1.6"; sha256="12m4kqmdix9x42lgi6pm75hw3sphj7hn7shkfa9v53074dgajyjh"; depends=[ggplot2]; };
+  ballr = derive2 { name="ballr"; version="0.2.2"; sha256="0iragzlw3fp02nj9l9smzxykgkd9vsq4g1lpkj88bs3wkynj112j"; depends=[dplyr janitor lubridate magrittr rlang rvest xml2]; };
+  bamboo = derive2 { name="bamboo"; version="0.9.23"; sha256="02mvj78kkcpa0bszf8jd0s7nvjwhgbxhgazqssw0fjifs2iqr2zn"; depends=[rscala]; };
+  bamdit = derive2 { name="bamdit"; version="3.2.1"; sha256="18l9kd3a0d4y6z38k9nm18j32g6dxmwylv8cv1wp3fzffv51lm1s"; depends=[ggExtra ggplot2 gridExtra MASS R2jags rjags]; };
+  bamlss = derive2 { name="bamlss"; version="1.0-1"; sha256="1nxy8a075dhdwz9jhyicqj1naz95w0mns64c6j59gpzwp03nvml4"; depends=[coda colorspace Formula Matrix MBA mgcv mvtnorm sp survival]; };
   banR = derive2 { name="banR"; version="0.2.0"; sha256="0m71m99f8f4wckylry6z16gw6r2cc4wxbd9287ns00jr6s13x6c8"; depends=[dplyr httr magrittr purrr readr rlang stringr tibble]; };
   bandit = derive2 { name="bandit"; version="0.5.0"; sha256="03mv4vbn9g4mqikd9map33gmw2fl9xvb62p7gpxs1240w5r4w3fp"; depends=[boot gam]; };
   bang = derive2 { name="bang"; version="1.0.0"; sha256="16wy2imrdvhpdzi6ix9k69afqdyc44d1xr655yd3q1cl12x1nr04"; depends=[bayesplot rust]; };
   bannerCommenter = derive2 { name="bannerCommenter"; version="0.1.0"; sha256="0ycx771g9a73w0sx8zzix8kswwbjagzhbyvaq7l5r8a9ayfli8ic"; depends=[]; };
+  banter = derive2 { name="banter"; version="0.9.3"; sha256="1ziys0zy66477ynr8rp2kv7w82n6226whn47aa06kkb4nhcqfk2c"; depends=[dplyr ggplot2 gridExtra magrittr plyr randomForest ranger rfPermute rlang tibble tidyr]; };
   banxicoR = derive2 { name="banxicoR"; version="0.9.0"; sha256="0vchm2hnqm45fhn8k38rcam4vkazmifcl40390s2r04bgvqr0pnl"; depends=[rvest stringr xml2]; };
   bapred = derive2 { name="bapred"; version="1.0"; sha256="08kvc4cc984jv08ikwbja8zxidrcdiwi5w88hlqakbm8yc6hzssa"; depends=[affy affyPLM Biobase FNN fuzzyRankTests glmnet lme4 MASS mnormt sva]; };
   barcode = derive2 { name="barcode"; version="1.1"; sha256="14zh714cwgq80zspvhw88cs5b82gvz4b6yfbshj9b7x0y2961nxd"; depends=[lattice]; };
+  barsurf = derive2 { name="barsurf"; version="0.1.0"; sha256="0lz87lzs4fs9rbc0p8a92li5cj1cd8va5rgp9s0n96rwmzmdkz63"; depends=[]; };
   bartMachine = derive2 { name="bartMachine"; version="1.2.4.2"; sha256="100zcpbndbps01qnybrgmsfnh37j93661l4v7zcin0i56cvgg998"; depends=[bartMachineJARs car missForest randomForest rJava]; };
   bartMachineJARs = derive2 { name="bartMachineJARs"; version="1.1"; sha256="1wpfzrb6mrx3xmxy4rgnwygmpqq2l4ki2xqr4m51g1bl9nwirhzj"; depends=[rJava]; };
   basad = derive2 { name="basad"; version="0.2.0"; sha256="1qc2amkrjrgdqys275p82lmbpjszm5rzjdpri7hqc9d8b8q1vc9q"; depends=[Rcpp RcppEigen rmutil]; };
@@ -4507,75 +4697,82 @@ in with self; {
   base64enc = derive2 { name="base64enc"; version="0.1-3"; sha256="13b89fhg1nx7zds82a0biz847ixphg9byf5zl2cw9kab6s56v1bd"; depends=[]; };
   base64url = derive2 { name="base64url"; version="1.4"; sha256="0n1c2b68vza1dh7sk38v6biiwm72c4jpl79kpdg1bsb0hq9qy18x"; depends=[backports]; };
   baseballDBR = derive2 { name="baseballDBR"; version="0.1.2"; sha256="0w54g1avcqamc12lmvjchlqbqck9jfjccm441k03nsql460mpydq"; depends=[dplyr magrittr rvest xml2]; };
-  basefun = derive2 { name="basefun"; version="1.0-1"; sha256="0qiszm71alh7p3inhiv9prdl4f5l45ny8plz2fm7l5h51z5xj54r"; depends=[Matrix orthopolynom polynom variables]; };
+  basefun = derive2 { name="basefun"; version="1.0-2"; sha256="16j7lzpyiw9iw3zb1cw2l685303dljv93kdxgfdzajzgcmmmpr6m"; depends=[Matrix orthopolynom polynom variables]; };
   baseline = derive2 { name="baseline"; version="1.2-1"; sha256="1vk0vf8p080ainhv09fjwfspqckr0123qlzb9dadqk2601bsivgy"; depends=[SparseM]; };
-  basicTrendline = derive2 { name="basicTrendline"; version="1.0.1"; sha256="0rsmlp70ylpkqv437jcy3skwbfkj4xwkpjb2q79b9n8kw2ir0716"; depends=[]; };
+  basicMCMCplots = derive2 { name="basicMCMCplots"; version="0.1.0"; sha256="033m0z7xj5lvzfw7g54ls99ii2wj5hwk5lhids124ax8ckqzspii"; depends=[]; };
+  basicTrendline = derive2 { name="basicTrendline"; version="2.0.3"; sha256="10rq9hriyn50b28ikvl0vsvchbkrc0pjzxamq4ix1xd04n4drkl9"; depends=[investr scales]; };
   basicspace = derive2 { name="basicspace"; version="0.20"; sha256="0nyljk8ydasirgv7ijxplyhk10s8m9k3rw5qmgf0z81dm7p257wc"; depends=[]; };
   basictabler = derive2 { name="basictabler"; version="0.1.0"; sha256="1m4cgghfh3aixsnwjlbaj3prnnqxhij60bakz9vdr5dvnqg92an9"; depends=[dplyr htmltools htmlwidgets jsonlite R6]; };
   bastah = derive2 { name="bastah"; version="1.0.7"; sha256="08xdba16wj0inp0kq2sbcrdr6wj8bwlq7rqnfrzjrz03wxhc5bk0"; depends=[BigQuic foreach glmnet lars MASS Matrix scalreg]; };
   batade = derive2 { name="batade"; version="0.1"; sha256="1lr0j20iydh15l6gbn471vzbwh29n58dlpv9bcx1mnsqqnsgpmal"; depends=[hwriter]; };
   batch = derive2 { name="batch"; version="1.1-5"; sha256="0wdgfvk2i542cqg34ikvzwlix09f2jyjb32a0f4zh9vg9nrywswq"; depends=[]; };
   batchmeans = derive2 { name="batchmeans"; version="1.0-3"; sha256="1qkdljngvlahk0pbrkarkjh2g4sxxwiva9f3m5y8gz8pjw9fpy9n"; depends=[]; };
-  batchtools = derive2 { name="batchtools"; version="0.9.10"; sha256="0qgjag82z7s6s35lccpidkq5rivkz03gnmcggrgaa9vskv0w6q62"; depends=[backports base64url brew checkmate data_table digest fs progress R6 rappdirs stringi withr]; };
+  batchtools = derive2 { name="batchtools"; version="0.9.11"; sha256="02mj21ypcjv5fs7ajf63p6bq0cyvihdl55hlpqx6kmsfjin1cr0v"; depends=[backports base64url brew checkmate data_table digest fs progress R6 rappdirs stringi withr]; };
   batman = derive2 { name="batman"; version="0.1.0"; sha256="0ccgx506p4iri23k2ikb8jmh04dp08w66785bv52iy8kd359h43f"; depends=[Rcpp]; };
   batteryreduction = derive2 { name="batteryreduction"; version="0.1.1"; sha256="0j838q7063bplkzd50kmnxji80cgysfsq7m1qifv8z7a2zsh8c8g"; depends=[pracma]; };
-  bayesAB = derive2 { name="bayesAB"; version="1.1.0"; sha256="0g74n6jvpmb2sbmywcagb10rk8sd3pxzkw9s8s6qpg34q58v01a6"; depends=[ggplot2 Rcpp]; };
+  bayesAB = derive2 { name="bayesAB"; version="1.1.1"; sha256="0kxrhxg43hzkcziyqpwy29iqs7i0qi3pn3jz0z1s8paf8drbgdf4"; depends=[ggplot2 Rcpp]; };
   bayesCL = derive2 { name="bayesCL"; version="0.0.1"; sha256="1l278lxidn16nma2ny14wjajcqyzbr6j5xl2lj08cic26c7hvjbm"; depends=[]; };
-  bayesDP = derive2 { name="bayesDP"; version="1.3.1"; sha256="175g75cpynccyzcbzca4h6xa2708985h8dhq34kvkpfhv35pc64d"; depends=[ggplot2 Rcpp RcppArmadillo survival]; };
+  bayesDP = derive2 { name="bayesDP"; version="1.3.2"; sha256="1xv133v01mbfsy0w5acc9819m92dcxfdjg4a8p7kdfkycz4ilwnl"; depends=[ggplot2 Rcpp RcppArmadillo survival]; };
   bayesDccGarch = derive2 { name="bayesDccGarch"; version="2.0"; sha256="1s2b8f43wi9ja966n2p2r4l4s79vk6xb8mqaxsagnw90g969p681"; depends=[coda numDeriv]; };
   bayesDem = derive2 { name="bayesDem"; version="2.5-1"; sha256="1cxrqil1p692mbzkcj1fvsx335qyy6c1y43mq48s4shs1hhc69bn"; depends=[bayesLife bayesPop bayesTFR gWidgets gWidgetsRGtk2 RGtk2 wpp2015]; };
   bayesGARCH = derive2 { name="bayesGARCH"; version="2.1.3"; sha256="1480mmzfshchfbfh3x420cq5qblfh59jkl21hkq2jvnwppksdn9w"; depends=[coda mvtnorm]; };
   bayesGDS = derive2 { name="bayesGDS"; version="0.6.2"; sha256="0ash16hmassn76x3f59dfvp4plqp8vb17qzcwmag7vi3mi3y2ap6"; depends=[Matrix]; };
-  bayesImageS = derive2 { name="bayesImageS"; version="0.5-2"; sha256="01gnjxrp68jxrygijk6v42dsiyfkxawvj4ilh0sajm05iknkn419"; depends=[Rcpp RcppArmadillo]; };
+  bayesImageS = derive2 { name="bayesImageS"; version="0.5-3"; sha256="0whb3am92v95rhxnlpjl212jsy2r6pv35svj4lgl7p74300b25ra"; depends=[Rcpp RcppArmadillo]; };
   bayesLife = derive2 { name="bayesLife"; version="3.2-0"; sha256="1a3x3y77542hgndvymhnyg6dys0s5rimkgprl8psflsgsrxnbmcv"; depends=[bayesTFR car coda hett wpp2017]; };
   bayesLopod = derive2 { name="bayesLopod"; version="1.0.1"; sha256="0v9yy75mvr74jc0fz10qj1acwxjy0lbqkdqaj1hn88v294r9dw3q"; depends=[BH inline raster Rcpp RcppEigen rgeos rstan rstantools slam sp StanHeaders]; };
-  bayesPop = derive2 { name="bayesPop"; version="6.2-4"; sha256="1z8s5lbvz642hxl10b4cv361izw82akq40dav3mknqqcgv1vlrk6"; depends=[abind bayesLife bayesTFR fields googleVis plyr reshape2 rworldmap wpp2012 wpp2017]; };
+  bayesPop = derive2 { name="bayesPop"; version="7.0-0"; sha256="1ydr0hds09xa17117y9dvk2sym2jfk0yjip79dig9c2vsykns0cm"; depends=[abind bayesLife bayesTFR fields googleVis plyr reshape2 rworldmap wpp2012 wpp2017]; };
   bayesQR = derive2 { name="bayesQR"; version="2.3"; sha256="1c6y7r9h9626ghp68pl5k1g0l95fwd6dp0jfznmhy53qza0ny8z4"; depends=[]; };
   bayesSurv = derive2 { name="bayesSurv"; version="3.2"; sha256="1zp302pfi64nnqdiqldvfi1lm0wv2dplz5sfjp0ydl1qc16z0axp"; depends=[coda smoothSurv survival]; };
-  bayesTFR = derive2 { name="bayesTFR"; version="6.1-2"; sha256="092sl8xk82kybpp0v06j0dxh4zal0d6j2na42ghl2ri36iy6wqvx"; depends=[coda MASS mvtnorm wpp2017]; };
+  bayesTFR = derive2 { name="bayesTFR"; version="6.2-0"; sha256="0qgab56dk8pf2r6rl3h18lfh6xkdw9jn5va55iw20lc4a52miz64"; depends=[coda MASS mvtnorm wpp2017]; };
   bayesammi = derive2 { name="bayesammi"; version="0.1.0"; sha256="1vfcmk47x71c5akj3ppxzb74293pikspknkkv08f8p15v0chk7fs"; depends=[dplyr ggplot2 lme4 magrittr MASS mvtnorm rlang rstiefel scales tibble tidyr tmvtnorm]; };
   bayesbio = derive2 { name="bayesbio"; version="1.0.0"; sha256="08qa4lzkrcwin7n3kzfqfdlnlqahdmjl1lxpdh29n780cgyjfvs0"; depends=[]; };
   bayesboot = derive2 { name="bayesboot"; version="0.2.2"; sha256="0976ryd0gbw3kpmxg2qxyp1m2swnrpa86vdhvqrqxp7fcrs8cs2z"; depends=[HDInterval plyr]; };
   bayescount = derive2 { name="bayescount"; version="0.9.99-5"; sha256="0c2b54768wn72mk297va3k244256xlsis9cd6zn6q5n1l7ispj6j"; depends=[coda rjags runjags]; };
+  bayesdfa = derive2 { name="bayesdfa"; version="0.1.0"; sha256="1ikladsmjw5y3hpjwmvn00wlg3fzgyzvwlrvkahdc5ni1mggh0fj"; depends=[BH dplyr ggplot2 loo Rcpp RcppEigen reshape2 rlang rstan StanHeaders]; };
   bayesianETAS = derive2 { name="bayesianETAS"; version="1.0.3"; sha256="0nbif0b6lcik2kh948zg5ska5mvkdsfr0dg8ndnfpscm2mp7y1dg"; depends=[]; };
   bayeslm = derive2 { name="bayeslm"; version="0.8.0"; sha256="1gvqkbz1wmqkxjwkdgj5pir5j1qy5dzjm4jv6mz3mplm16z5vzbl"; depends=[coda Rcpp RcppArmadillo RcppParallel]; };
   bayesloglin = derive2 { name="bayesloglin"; version="1.0.1"; sha256="0j2ziahf6mwsz2gvb1azvdzlmszlpqgr5zqcqa68pxgq947sa2cs"; depends=[igraph]; };
   bayeslongitudinal = derive2 { name="bayeslongitudinal"; version="0.1.0"; sha256="0g45ikpnbry1albb3asrzab5z3sy98yf74c64qn02d65xgafifwg"; depends=[LearnBayes MASS mvtnorm]; };
   bayesm = derive2 { name="bayesm"; version="3.1-0.1"; sha256="04b4s8clxrmdyhnhd2arnsdi992422yam3z91w6dzrmngwxq4yaq"; depends=[Rcpp RcppArmadillo]; };
-  bayesmeta = derive2 { name="bayesmeta"; version="2.2"; sha256="15pqa1plcnl8pbzs38cw22y3qq1v7f9vla4zy0154crvbrbp8kwf"; depends=[forestplot metafor]; };
+  bayesmeta = derive2 { name="bayesmeta"; version="2.3"; sha256="12rljnlr7wv0q95ild7vrsbgkpg7zw1lmh6gx4kpip1ckax04360"; depends=[forestplot metafor]; };
   bayesmix = derive2 { name="bayesmix"; version="0.7-4"; sha256="1qms1nnk2nq3gqr8zf2b9ri4wv8jrxv5i8s087k1rwdvya3k5r9a"; depends=[coda rjags]; };
-  bayesplot = derive2 { name="bayesplot"; version="1.5.0"; sha256="1f0kgrgr87fp9576ssrygkp5n4186zq1rw5iwzhqr8s81is352li"; depends=[dplyr ggplot2 ggridges reshape2 rlang]; };
+  bayesplot = derive2 { name="bayesplot"; version="1.6.0"; sha256="0in9cq2ybpa7njrwqx4l6nc8i01cjswsvzwlyiw465pi74aapr57"; depends=[dplyr ggplot2 ggridges reshape2 rlang]; };
   bayespref = derive2 { name="bayespref"; version="1.0"; sha256="0gwlzs7qkgmf90np7xv85d27jjqggyhfj00vpya664a2znyjb3jm"; depends=[coda lattice MASS MCMCpack RColorBrewer]; };
   bayess = derive2 { name="bayess"; version="1.4"; sha256="0axipk5hn2hw3g4dfh7y3xa0dxqmi8kqpbr77nl14y7ydpija6xm"; depends=[combinat gplots MASS mnormt]; };
-  bayou = derive2 { name="bayou"; version="2.1"; sha256="0biziarmamdpapv2p2ylvxqa4mcdvdwbay545w51yb73538bgkb8"; depends=[ape assertthat coda denstrip fitdistrplus foreach geiger MASS Matrix mnormt phytools Rcpp RcppArmadillo]; };
+  bayou = derive2 { name="bayou"; version="2.1.1"; sha256="17gvb2dmviwibnlqn6p3p9pcc3705xh9r8lrm90p0yg7nhm0cn02"; depends=[ape assertthat coda denstrip fitdistrplus foreach geiger MASS Matrix mnormt phytools Rcpp RcppArmadillo]; };
   baystability = derive2 { name="baystability"; version="0.1.0"; sha256="1zv4bf5a4p21w2qpr6lcsgsxb0xv15v8p33031rsypmnbs9i80dp"; depends=[dplyr ggfortify ggplot2 lme4 magrittr MASS matrixStats reshape2 rlang rstiefel scales tibble tidyr tidyverse]; };
-  bazar = derive2 { name="bazar"; version="1.0.6"; sha256="12b1x218x1yh9iadv8ciyncr841s0arvj4pbn74bryhcgbvmbwqm"; depends=[kimisc]; };
+  baytrends = derive2 { name="baytrends"; version="1.0.7"; sha256="1l59w79n2l04n0i12ka1cvnnqsx9412b2fgsgp4pz5hsi5nswlp8"; depends=[dataRetrieval digest gdata lubridate memoise mgcv plyr survival XML zCompositions]; };
+  bazar = derive2 { name="bazar"; version="1.0.10"; sha256="1in3096bxw7v80wxkjp6i9akyv18ihzc0kldl952i9s772dcgbfs"; depends=[kimisc]; };
   bbefkr = derive2 { name="bbefkr"; version="4.2"; sha256="1wjx652w3p41sq71a2zdzmb7frjxm6xvcgrc2ark2spwb0lbjjw6"; depends=[]; };
   bbemkr = derive2 { name="bbemkr"; version="2.0"; sha256="015c57s8mpimm82nddnh382wlkisxgdmc2hvp7k38pcnqxc5gb5q"; depends=[MASS]; };
   bbmle = derive2 { name="bbmle"; version="1.0.20"; sha256="1xzij7swrrzl5ly8l3lw6awh486zcm00251dwqws1y23fbgyh3vc"; depends=[lattice MASS numDeriv]; };
   bbo = derive2 { name="bbo"; version="0.2"; sha256="19xrbla3bb3csg3gjjrpkgyr379zfwyh293bcrcd6j8rnm6g4i01"; depends=[]; };
   bbw = derive2 { name="bbw"; version="0.1.3"; sha256="1z3an561qh0rfi3jhh1ghsdbg8aimqmf4hpqri2jz39in3p0gwg4"; depends=[car]; };
   bc3net = derive2 { name="bc3net"; version="1.0.4"; sha256="15dghd0v1s71h77iw8b49v5h7wcda5mb4540lfyibsdipbashv2h"; depends=[c3net igraph infotheo lattice Matrix]; };
-  bcROCsurface = derive2 { name="bcROCsurface"; version="1.0-2"; sha256="0v1zjbgpalr5ag97s9rxcd2z0r7qpw8yhc4lw4p4i3xkw2paf5zh"; depends=[boot nnet Rcpp RcppArmadillo rgl]; };
+  bcROCsurface = derive2 { name="bcROCsurface"; version="1.0-3"; sha256="1g9l4abnpp1iq5wy3rl2jv47ql9zh6s2qrhyj06x22358lpinjnl"; depends=[boot nnet Rcpp RcppArmadillo rgl]; };
   bcRep = derive2 { name="bcRep"; version="1.3.6"; sha256="1fibx11ykkkjv4sgg6zc2a0g270384z2cf68hwghnld0wi002b5z"; depends=[ape doParallel foreach gplots ineq plotrix proxy stringdist vegan]; };
+  bcaboot = derive2 { name="bcaboot"; version="0.2-1"; sha256="0wf1igkb0lidz4pvh3kfccs9858m1g9650wprrvrpwsdfrcd7rc9"; depends=[]; };
+  bcf = derive2 { name="bcf"; version="1.2.1"; sha256="03l4wlqz69sqkffjrlznlam2sql9zfpa6x84y7x1z66zfy6f7n79"; depends=[Rcpp RcppArmadillo]; };
   bcgam = derive2 { name="bcgam"; version="1.0"; sha256="1dg2fcjw8xal77irviiz260qpar2iqkjvi2k4qfm71jyq0ir0axk"; depends=[coda igraph nimble]; };
   bclust = derive2 { name="bclust"; version="1.5"; sha256="01kx02azj26b6swly53zhf3sny6c6jglkxnzylsc0pvri89x7yj2"; depends=[]; };
   bcmaps = derive2 { name="bcmaps"; version="0.17.1"; sha256="12hca67n7fqplis8g954hj588zl9kj8gmph86mxhcy151qpyh927"; depends=[httr rappdirs sf]; };
-  bcp = derive2 { name="bcp"; version="4.0.2"; sha256="0ixpjhyyqaz7gc2ixpask062sxhsfg8d146mm244jkqgiagydg5l"; depends=[Rcpp RcppArmadillo]; };
+  bcp = derive2 { name="bcp"; version="4.0.3"; sha256="0vhs89lb2wpanqsljclpvwbjmgdsc3jicws8bzqiqh8mbs3nzpxy"; depends=[Rcpp RcppArmadillo]; };
   bcpa = derive2 { name="bcpa"; version="1.1"; sha256="0rwbd39szp0ar9nli2rswhjiwil31zgl7lnwm9phd0qjv8q0ppar"; depends=[plyr Rcpp]; };
   bcpmeta = derive2 { name="bcpmeta"; version="1.0"; sha256="02fw1qz9cvr7pvmcng7qg7p04wxxpmvb2s8p78f52w4bf694iqhl"; depends=[mvtnorm]; };
   bcrm = derive2 { name="bcrm"; version="0.4.7"; sha256="0s0xmmphrrsqnrsnnsqh9ska6afl4jyk0s0290w6askrlqdzjgil"; depends=[ggplot2 mvtnorm]; };
   bcrypt = derive2 { name="bcrypt"; version="1.1"; sha256="1wwdin8x09y8n8zrwj1ylh5ikcz0v0la4wmrsvbdr61cg336wzx4"; depends=[openssl]; };
   bcv = derive2 { name="bcv"; version="1.0.1"; sha256="0yqcfariw9sw0b8cpljcr7vf5rf0cwr1wbif23icchfaxk2m42gj"; depends=[]; };
+  bdDwC = derive2 { name="bdDwC"; version="0.1.15"; sha256="0yraq8a0wgz12rzi2dx0gdcz5rx99qd2pzw972wjqyq3rs41pwx0"; depends=[shiny shinyBS shinydashboard shinyFiles shinyjs]; };
   bda = derive2 { name="bda"; version="10.1.9"; sha256="06ycxqjpnsywakjkjxf1czhxsbdzbpwa11m69gad5538z066d24x"; depends=[]; };
   bde = derive2 { name="bde"; version="1.0.1"; sha256="1f25gmjfl58x4pns89abfk85yq5aad3bgq9yqpv505g5gxk62d3v"; depends=[ggplot2 shiny]; };
   bdlp = derive2 { name="bdlp"; version="0.9-1"; sha256="1ydb5hsaj1bfdz7hcdkc74qlk608kf0xrbpw247klkxrhsh9ba2p"; depends=[DBI GenOrd MASS MultiOrd rgl RSQLite stringdist]; };
   bdots = derive2 { name="bdots"; version="0.1.19"; sha256="1cj6ly62d50z6713119hadl90cxf5x30wpnpx6mssmd49zds6nxb"; depends=[doParallel doRNG foreach Matrix mvtnorm nlme]; };
   bdpopt = derive2 { name="bdpopt"; version="1.0-1"; sha256="1z7mdqklw3frsdzyhvx8s8wvblwm28fr1gca2yrivqjng0r47lx4"; depends=[coda rjags]; };
   bdpv = derive2 { name="bdpv"; version="1.1"; sha256="0i6wdf27243ch8pn2chqriwxjg3g72wbvzlx52mz4ahw700xjc7n"; depends=[]; };
+  bdribs = derive2 { name="bdribs"; version="1.0.4"; sha256="19qakmdw3l8vfxkr4p1ydkyfs4cmq37lqzw7l5zx5rdn6zlhqwh4"; depends=[rjags]; };
   bdscale = derive2 { name="bdscale"; version="2.0.0"; sha256="1hkkfd69g2bg2y4hicjs6bnw9f0zw74jy0dpadchnzw17lffpms3"; depends=[ggplot2 scales]; };
   bdsmatrix = derive2 { name="bdsmatrix"; version="1.3-3"; sha256="17ddvz4gnih7rx0lr1gzk280xyh6x796cf2x794dvplpiiq83skh"; depends=[]; };
-  bdvis = derive2 { name="bdvis"; version="0.2.20"; sha256="1iif70s17d9nh6bylm9s0ky70qx441n56h953gz4hxp7rb5dly31"; depends=[chron ggplot2 lattice leafletR maps plotrix plyr sqldf taxize treemap]; };
+  bdvis = derive2 { name="bdvis"; version="0.2.22"; sha256="1kfkn3ak1aqqj61ryfxmq8vvmi4z4znha03ga1ncsrnpb6g1kfvk"; depends=[chron ggplot2 lattice leafletR maps plotrix plyr rgdal sqldf taxize treemap]; };
   bdynsys = derive2 { name="bdynsys"; version="1.3"; sha256="07gfyp0qwq9y1cnh7lhcz7q0b1s51cjwlbpll50l2cza2dszmf29"; depends=[caTools deSolve Formula Hmisc MASS matrixStats plm pracma]; };
   bea_R = derive2 { name="bea.R"; version="1.0.6"; sha256="15pdbwz7av8862bl144n998qk0w9rqwip9m2brdm5hj7id5xdlif"; depends=[chron colorspace data_table DT ggplot2 googleVis gtable htmltools htmlwidgets httpuv httr jsonlite magrittr munsell plyr Rcpp scales shiny shinydashboard stringi stringr xtable yaml]; };
   beadarrayFilter = derive2 { name="beadarrayFilter"; version="1.1.0"; sha256="044dq5irc00v2f2gjz0vb69w7q7b84lppc55ganabdv4f0dxdblc"; depends=[beadarray RColorBrewer]; };
@@ -4588,48 +4785,49 @@ in with self; {
   bedr = derive2 { name="bedr"; version="1.0.4"; sha256="052sn90gjr34hjgyndzvcl66pv22q0kjqbx95y1pdydiwhwmhpa3"; depends=[data_table R_utils testthat VennDiagram yaml]; };
   beepr = derive2 { name="beepr"; version="1.3"; sha256="061sfld23b516jws4llml0a4jsdk4z74rll4z58l2rvahkqsdrfp"; depends=[audio stringr]; };
   beeswarm = derive2 { name="beeswarm"; version="0.2.3"; sha256="0hy89bwv7jixlg91li1fywa77916am2whqp1m1fx1khd45g44581"; depends=[]; };
+  beezdemand = derive2 { name="beezdemand"; version="0.1.0"; sha256="1i6p36cfvz87k6llpibklmdbjb7vp1v38ijxaqkmv1jzc28sj3cl"; depends=[ggplot2 nlmrt nls2 nlstools reshape2]; };
   beginr = derive2 { name="beginr"; version="0.1.3"; sha256="1wrxcgapan19p2zwvmrz9fg9hwkxfm0x2qcqkanmn0mmsaixhs3h"; depends=[cranlogs]; };
+  behaviorchange = derive2 { name="behaviorchange"; version="0.0.2"; sha256="1g5r4mnqpls16836pi2dr7lm308c677m5j8xha6c12pnr39rnc4a"; depends=[data_tree DiagrammeR ggplot2 googlesheets gridExtra gtable magrittr ufs userfriendlyscience viridis]; };
   behavr = derive2 { name="behavr"; version="0.3.1"; sha256="18rpln7db8cnaj6f47vjgh7q2xbcjmd0vhfbmvm82fr7qhdnnyc0"; depends=[data_table]; };
   belex = derive2 { name="belex"; version="0.1.0"; sha256="1563yngc1lvncmx3h6kgsj1r6k3hvxidh6h9rb7apxs2rq5k32ms"; depends=[XML]; };
   belg = derive2 { name="belg"; version="0.2.3"; sha256="1ss40fxfmzld4fqpbkc3knsxdqc4nmllgvl2v4nyqzcalcknzvvf"; depends=[Rcpp RcppArmadillo]; };
   bench = derive2 { name="bench"; version="1.0.1"; sha256="0hiwm3jbwr9wjdfx0nk3djskiw1q900h4acaqjgy97p8gl0ig3g8"; depends=[glue pillar profmem rlang tibble]; };
   benchden = derive2 { name="benchden"; version="1.0.5"; sha256="1cwcgcm660k8rc8cpd9sfpzz66r55b4f4hcjc0hznpml35015zla"; depends=[]; };
-  benchmark = derive2 { name="benchmark"; version="0.3-6"; sha256="05rgrjhbvkdv06nzbh0v57b06vdikrqc1d29wirzficxxbjk1hih"; depends=[ggplot2 plyr proto psychotools relations reshape scales]; };
   benchmarkme = derive2 { name="benchmarkme"; version="0.6.0"; sha256="0w98q4b814bz3q0vqdfnwqrgfrky3ggsyyzmdiz17kv6xk17qds8"; depends=[benchmarkmeData doParallel foreach httr Matrix]; };
   benchmarkmeData = derive2 { name="benchmarkmeData"; version="0.5.1"; sha256="0vv5d90qv81lwrgi5d3zbwlwxwjqlx70xi4ljhcc0ljv50x2rvv4"; depends=[]; };
-  benchr = derive2 { name="benchr"; version="0.2.0"; sha256="042ijh6726s116z7w2cky5l105p3dj7xsfmlwkigsbrmya8x5d37"; depends=[Rcpp RcppProgress]; };
+  benchr = derive2 { name="benchr"; version="0.2.2"; sha256="1ls75pmhvj6d4wc9knifv6d1dfr0avfhry370m636mhfpw4z2ybf"; depends=[Rcpp RcppProgress]; };
   benford_analysis = derive2 { name="benford.analysis"; version="0.1.4.1"; sha256="0acbjjavbvsaigy78b5k9qhj8011751116lqln8j0v8w1k3vqwqm"; depends=[data_table]; };
   bentcableAR = derive2 { name="bentcableAR"; version="0.3.0"; sha256="1gjrlv94av9955jqhicaiqm36rrgmy0avxn9y7wbp2s1sbg7fyg7"; depends=[]; };
   benthos = derive2 { name="benthos"; version="1.3-5"; sha256="1mzhqqy4dblwv70v1ky5gzrr3jyky9k4wibbp589jjjrga2vhq2a"; depends=[dplyr lazyeval readr]; };
   ber = derive2 { name="ber"; version="4.0"; sha256="0gl7rms92qpa5ksn8h3ppykmxk5lzbcs13kf2sjiy0r2535n8ydi"; depends=[MASS]; };
   berryFunctions = derive2 { name="berryFunctions"; version="1.17.0"; sha256="13wslhr3xm9davx3s69as41r53m3x0gm3mrnwrbsqcbmf9n0zbv3"; depends=[abind]; };
-  bestNormalize = derive2 { name="bestNormalize"; version="1.2.0"; sha256="0ixv5w4x4413131fxl47c3ma0h9ac1khakp89psnci4qjxbcx5xc"; depends=[LambertW nortest]; };
+  bestNormalize = derive2 { name="bestNormalize"; version="1.3.0"; sha256="0wipxc4dqhpmxqb8nkfp2pgxp7854r1rgrmppvlja7v5hwz4mgw7"; depends=[doParallel doRNG dplyr foreach LambertW nortest]; };
   bestglm = derive2 { name="bestglm"; version="0.37"; sha256="0ghhi4g75mgq2pnkrvw188s65132i1d7v3hahnjrsnx4vrr8a9lz"; depends=[glmnet grpreg lattice leaps pls]; };
-  betaboost = derive2 { name="betaboost"; version="1.0.0"; sha256="11r6vywkb8182r1797aijm3czrxxghv5hjbadw61ick0masvcpml"; depends=[gamboostLSS mboost]; };
+  betaboost = derive2 { name="betaboost"; version="1.0.1"; sha256="1zdyzxl2kp2i5lkiz280wz4av9wqklbn25zmq6n4yb6a579yjfn8"; depends=[gamboostLSS mboost]; };
   betacal = derive2 { name="betacal"; version="0.1.0"; sha256="19wgpgf9yhckl9qx9v24f4yh055wfalphcxwm7lg68px6ap2pxl9"; depends=[]; };
   betafam = derive2 { name="betafam"; version="1.0"; sha256="1nf5509alqnr5qpva36f1wb7rdnc084p170h91jv89xvzsidqxca"; depends=[]; };
   betalink = derive2 { name="betalink"; version="2.2.1"; sha256="1wskr8nh1jzcrnc8fn58lscphsvj5z9p1i1pnpfdjn60mdb09rkp"; depends=[igraph plyr stringr]; };
-  betapart = derive2 { name="betapart"; version="1.5.0"; sha256="0hk016hpdb927d142rfa13kjwhgzki1fy4xqbwdphzwv37nyxag7"; depends=[ape geometry picante rcdd]; };
+  betapart = derive2 { name="betapart"; version="1.5.1"; sha256="0j72rfvnn0ag6vxp8nw5v68n3qblyp5gd0y8z1kchs4dbq1v288g"; depends=[ape fastmatch geometry picante rcdd]; };
   betaper = derive2 { name="betaper"; version="1.1-0"; sha256="1gr533iw71n2sq8gga9kzlah7k28cnlwxb2yh562gw6mh1axmidm"; depends=[ellipse vegan]; };
-  betareg = derive2 { name="betareg"; version="3.1-0"; sha256="05s5lszj22186xhvk0dxgz4vqfvmss40pbh147mwqkz1h48z5pf7"; depends=[flexmix Formula lmtest modeltools sandwich]; };
+  betareg = derive2 { name="betareg"; version="3.1-1"; sha256="07cblxprybqkv55805za6qg47vw95azxn4446frxwkramza4ygv2"; depends=[flexmix Formula lmtest modeltools sandwich]; };
   betas = derive2 { name="betas"; version="0.1.1"; sha256="1v85r6lrk21viwzam42gi42bgbwh5ibn3dpbh3aqrf3dnn1rdsyd"; depends=[robust]; };
   betategarch = derive2 { name="betategarch"; version="3.3"; sha256="0hqvyps3lwix2fkzk18wrkhxpqhgardvib9sq1ip8gn8sn1dsi8y"; depends=[zoo]; };
   bethel = derive2 { name="bethel"; version="0.2"; sha256="1zlkw672k1c5px47bpa2vk3w2906vkhvifz20h6xm7s51gmm64i0"; depends=[]; };
-  beyondWhittle = derive2 { name="beyondWhittle"; version="0.18.1"; sha256="0aph1sshnxk7aajnm871zw9fadxbhv8l93kbydzh69b8kiz6wi6x"; depends=[ltsa Rcpp]; };
+  beyondWhittle = derive2 { name="beyondWhittle"; version="1.0"; sha256="15q3dp5aw7csr3sp12vxhjvhazryk9b67x1spp0kv7qxy1v2jl95"; depends=[ltsa MASS Rcpp]; };
   bezier = derive2 { name="bezier"; version="1.1"; sha256="1bhqf1zbshkf1x8mgqp4mkgdxk9jxi51xj6i47kqkyn9gbdzch0c"; depends=[]; };
   bfa = derive2 { name="bfa"; version="0.4"; sha256="08n6446xl2w8z0rsqi6v2hp9cp744frxw6vrbxg5cpybhyyfzr36"; depends=[coda Rcpp RcppArmadillo]; };
   bfast = derive2 { name="bfast"; version="1.5.7"; sha256="0n75minka55rxpvs3qkj0c65ydn1gc3i8lkr2gdyn1adjkl5yn01"; depends=[forecast raster sp strucchange zoo]; };
   bfp = derive2 { name="bfp"; version="0.0-39"; sha256="1g3sbmi1yl7ai8v6a2ri54jqv64wzfy580s8i1w9xwbqjcrpj77m"; depends=[Rcpp]; };
-  bfw = derive2 { name="bfw"; version="0.1.0"; sha256="13hbg2kr56yfg2r58cw3l631rq1kv8bk9gcdqbgspsjn04g1iq2f"; depends=[coda MASS rJava runjags]; };
+  bfw = derive2 { name="bfw"; version="0.2.0"; sha256="05h4i3mpwgdn3w1163qhzzhzrcxzsw3y35pjzj0w4kjc28nkp354"; depends=[coda MASS runjags]; };
   bgeva = derive2 { name="bgeva"; version="0.3-1"; sha256="0qm4xknyab8hdyn3in2hsvm8s062cnmqqf41b5jvax1mi5hs0z8c"; depends=[magic mgcv trust]; };
   bgmfiles = derive2 { name="bgmfiles"; version="0.0.6"; sha256="10qldfjjq5fx5jrrakdxc8k2pf0vp8ifg18nq56lvx9n28mqigim"; depends=[]; };
   bgmm = derive2 { name="bgmm"; version="1.8.3"; sha256="09hsqjjyzlpl0fqb7832j5ydrr0yc42zb1c9q1y5hbrms7yp00p8"; depends=[car combinat lattice mvtnorm]; };
-  bgsmtr = derive2 { name="bgsmtr"; version="0.1"; sha256="09h118msqf9yl2z7d6dsvgn4vrvy43ynznajj58k7gkxdlm1nimg"; depends=[coda EDISON Matrix mnormt mvtnorm sparseMVN statmod]; };
+  bgsmtr = derive2 { name="bgsmtr"; version="0.2"; sha256="05d4bd350parb3nfwb2arb1z2g24l6pr81z9m5q76rhhsxp6rzn8"; depends=[coda EDISON inline LaplacesDemon Matrix matrixcalc miscTools mnormt mvtnorm Rcpp sparseMVN statmod TargetScore]; };
   bhm = derive2 { name="bhm"; version="1.13"; sha256="1iq1hjc7xn2kmmxgzv6mzcvvf48kqp5b8lavmzrqykak3v4z02nz"; depends=[coda survival]; };
-  bhrcr = derive2 { name="bhrcr"; version="1.0.0"; sha256="0rqn9wkd25d7l295n55idsf1zch1niz5f05qnsbd1gqrq7nw42xn"; depends=[AER Cairo MASS MCMCpack msm mvtnorm survival]; };
+  bhrcr = derive2 { name="bhrcr"; version="1.0.1"; sha256="1frkzngrxy65nzdz3aylpj4kfikd1giwpwsy0bbhr5a9zbpr405v"; depends=[AER Cairo MASS MCMCpack msm mvtnorm survival]; };
   biasbetareg = derive2 { name="biasbetareg"; version="1.0"; sha256="1562zdin0y5mrp36ih11ir3h9cv49cx1l98chxd89fkj8x3c1fbg"; depends=[betareg]; };
   bib2df = derive2 { name="bib2df"; version="1.0.1"; sha256="1rprcnqvs4nicd26h34kpgzlpl22430dikxs2q1sjf861qachi10"; depends=[dplyr httr humaniformat stringr]; };
-  bibliometrix = derive2 { name="bibliometrix"; version="1.9.4"; sha256="0l2lqz9qx8f86dz2asvv11iv366hvjn2fjamgm98winrvyrzqnsw"; depends=[factoextra FactoMineR ggplot2 ggraph ggrepel igraph Matrix RColorBrewer RISmed rscopus SnowballC stringdist stringr]; };
+  bibliometrix = derive2 { name="bibliometrix"; version="2.0.1"; sha256="1j7gf3r7z622m3gyaf8mw16gspnj59ad97h9zn9wk1kmy02bmwnp"; depends=[dplyr DT factoextra FactoMineR ggplot2 ggraph ggrepel igraph Matrix networkD3 RColorBrewer RISmed rscopus shiny shinycssloaders shinythemes SnowballC stringdist stringr]; };
   bibtex = derive2 { name="bibtex"; version="0.4.2"; sha256="0wl3925ryd54g1nv3ncwllc493d39dpgy5md61940h69c0van1hz"; depends=[stringr]; };
   biclust = derive2 { name="biclust"; version="2.0.1"; sha256="1y5n6wfa1lx88ck3x09rcg0dh3pw89225h85hmq2la1s1fpa48i0"; depends=[additivityTests colorspace flexclust ggplot2 lattice MASS tidyr]; };
   bife = derive2 { name="bife"; version="0.5"; sha256="0lzij8sazfdr687bi5lfp5ndvwlx18vyzr3svc0zv9mnv8s8vfvd"; depends=[Formula Rcpp RcppArmadillo]; };
@@ -4641,33 +4839,37 @@ in with self; {
   bigReg = derive2 { name="bigReg"; version="0.1.2"; sha256="1hmvh5j40zpzz6c88hmikphps8rb741yvkg60dxmkfl8gxqsrp3w"; depends=[MASS Rcpp RcppArmadillo uuid]; };
   bigalgebra = derive2 { name="bigalgebra"; version="0.8.4"; sha256="19rv552ac0q9djc1yvpldkc0lipdf6q143m9dnndpsqs7ayqlr4g"; depends=[BH bigmemory]; };
   biganalytics = derive2 { name="biganalytics"; version="1.1.14"; sha256="1hsqdg5hkhs6z9pwvn055q02hzpksjwrf33q5zdnkm387g188ca6"; depends=[BH biglm bigmemory foreach Rcpp]; };
-  bigchess = derive2 { name="bigchess"; version="1.0.0"; sha256="14hjrma9qjyi9nypbvrqrzf6d1fxh4rrc48yq95vsrg7vr4han5x"; depends=[ff ffbase]; };
-  bigdatadist = derive2 { name="bigdatadist"; version="1.0"; sha256="1xmralvhdczd270c2ym47ywc7gkqs247vpjr1vpmqsgiqvr7n1ql"; depends=[FNN MASS pdist rrcov]; };
+  bigchess = derive2 { name="bigchess"; version="1.1.0"; sha256="0w6zhlljnza16xb1zsw4lan9al4pynbvk4d830yvqpd3bnb6aidk"; depends=[ff ffbase]; };
+  bigdatadist = derive2 { name="bigdatadist"; version="1.1"; sha256="16gkybwcp9sxqb0iic2fhmc4gndr44ayg14wrfcjvjaj4g5r6xs2"; depends=[FNN MASS pdist rrcov]; };
   biglars = derive2 { name="biglars"; version="1.0.2"; sha256="17zs25dvlja9ynx2fm5f4nmgkx4mnyqs5iscwsyahr6qigx1rz9x"; depends=[ff]; };
   biglasso = derive2 { name="biglasso"; version="1.3-6"; sha256="044l2l34l4pl7ijwgq569cn8x5clj795qpfwb1b9qfwvggvgzgni"; depends=[BH bigmemory Matrix ncvreg Rcpp RcppArmadillo]; };
   bigleaf = derive2 { name="bigleaf"; version="0.6.5"; sha256="0l2a4xi9jyx9sd79fvva9rqqxb4mld99k0gycn07fb81m8lkf690"; depends=[robustbase]; };
   biglm = derive2 { name="biglm"; version="0.9-1"; sha256="1z7h4by457z93k5i6qf5rq7xmd1y2kcd1rq4pv465cd32d4mb2g1"; depends=[DBI]; };
-  bigmatch = derive2 { name="bigmatch"; version="0.2.1"; sha256="0c2rg6fiphb01xz6lm34766gwz7m054bgismwbx6wscmw51nj7rw"; depends=[liqueueR mvnfast plyr rcbalance]; };
+  biglmm = derive2 { name="biglmm"; version="0.9-1"; sha256="1f4w59jvq7lq0bh5fs41czw0yc8h56iijbj0hlcq47zyqx6gll9a"; depends=[DBI]; };
+  bigmatch = derive2 { name="bigmatch"; version="0.4.1"; sha256="13sdvjik3x35csjs5cwbymgkkvsj26j7fp25xijs41sfa4kcri53"; depends=[liqueueR mvnfast plyr rcbalance]; };
   bigmemory = derive2 { name="bigmemory"; version="4.5.33"; sha256="0ycl9dzm3drpyas625h34rir5bnbjlncxlvawfsfmqwcbmwdjdvj"; depends=[BH bigmemory_sri Rcpp]; };
   bigmemory_sri = derive2 { name="bigmemory.sri"; version="0.1.3"; sha256="0mg14ilwdkd64q2ri9jdwnk7mp55dqim7xfifrs65sdsv1934h2m"; depends=[]; };
   bigml = derive2 { name="bigml"; version="0.1.2"; sha256="0vl5krjbgckknxwl26b2hn63jhb80zbn7abpckhxzxfxzncpnfz9"; depends=[plyr RCurl RJSONIO]; };
+  bigreadr = derive2 { name="bigreadr"; version="0.1.3"; sha256="1cdr7i8y7bvhfajs3bmxlljbda2922dgbiwkkyxn2k5cn384plak"; depends=[data_table fpeek Rcpp]; };
   bigrquery = derive2 { name="bigrquery"; version="1.0.0"; sha256="0z7wsqxla1pg2454l35kkfaz2s9hppwvpz1pds286ddldbbmyzis"; depends=[assertthat curl DBI glue httr jsonlite prettyunits progress rapidjsonr Rcpp tibble]; };
   bigsplines = derive2 { name="bigsplines"; version="1.1-1"; sha256="1kf04p2lglzdi1fdryk27nmj2a2jca2ii7ki8vak93sq21isb179"; depends=[quadprog]; };
-  bigstep = derive2 { name="bigstep"; version="0.7.4"; sha256="0g45fgnamdv1v3b8xvpsj4rzhisyvbbddwyzvzvmmi4a8w20pzn5"; depends=[bigmemory matrixStats R_utils RcppEigen speedglm]; };
+  bigstatsr = derive2 { name="bigstatsr"; version="0.6.2"; sha256="1dv6615yn26lpqj4nswji74zp4zjp6j5m1n0h1h3jffdh7xai46d"; depends=[BH bigreadr cowplot doParallel foreach ggplot2 Rcpp RcppArmadillo RSpectra]; };
+  bigstep = derive2 { name="bigstep"; version="1.0.0"; sha256="1bkh7a4qzvh567qglkyidlfam5qj33aih9k8ndxj2ng6dcq38lbd"; depends=[bigmemory magrittr matrixStats R_utils RcppEigen speedglm]; };
   bigtabulate = derive2 { name="bigtabulate"; version="1.1.5"; sha256="1jvp3m0ms2cav9z8vvhh80gsa0kvc351brv2jq99rxv1mwvpa4xj"; depends=[BH biganalytics bigmemory Rcpp]; };
   bigtcr = derive2 { name="bigtcr"; version="1.1"; sha256="1l03yc28afdm7glbw4ay0zsywjgqg5l90qz1hfhslsy8gg7d5wq5"; depends=[]; };
   bigtime = derive2 { name="bigtime"; version="0.1.0"; sha256="136gy2i4qwa2drklllyzp3z0dbijlavgf3sxy73bf84df2yq1c9i"; depends=[corrplot lattice MASS Rcpp RcppArmadillo RcppEigen zoo]; };
-  bikedata = derive2 { name="bikedata"; version="0.2.0"; sha256="1iihf1nf3ybvkhq4j3c5p1271c56vpsmsrjf3q2r9n98g3apa6k2"; depends=[BH DBI dodgr httr lubridate magrittr Rcpp readxl reshape2 RSQLite tibble xml2]; };
+  bikedata = derive2 { name="bikedata"; version="0.2.2"; sha256="02qwi0rdrg6pmimfqc9y2nkb9l9aks8zxgqz9paqyr2b2psib7ym"; depends=[BH DBI dodgr httr lubridate magrittr Rcpp readxl reshape2 RSQLite tibble xml2]; };
   bikeshare14 = derive2 { name="bikeshare14"; version="0.1.0"; sha256="12399c01s8p9rmpi3fpy4rm7xxnsf627slz3h234frbahhs882c4"; depends=[]; };
   bild = derive2 { name="bild"; version="1.1-5"; sha256="03has1zi57inicahl52ja006vv5cdndyxfsxp77l6nc3zc6ixna8"; depends=[]; };
   billboard = derive2 { name="billboard"; version="0.1.0"; sha256="1z3y8dijhc1381y91n5zq305xzm1gpvs0g4mdpfr7zrblpa8ws39"; depends=[tibble]; };
-  billboarder = derive2 { name="billboarder"; version="0.2.2"; sha256="14jq3k2d0bsc2l8hsc2shps3hw6fq0k0w5m0yj9k4hbidgpg9z7n"; depends=[ggplot2 htmlwidgets jsonlite magrittr scales]; };
+  billboarder = derive2 { name="billboarder"; version="0.2.4"; sha256="0y4rcrcdi8jfp5dha4vzvr5d0rq73wlbvszb517bdwgg4cgh2hgq"; depends=[ggplot2 htmltools htmlwidgets jsonlite magrittr scales]; };
   bimetallic = derive2 { name="bimetallic"; version="1.0"; sha256="181qi4dr0zc7x6wziq7jdc1his20jmprfpq3hrfm56fr5n1sj8wl"; depends=[]; };
   bimixt = derive2 { name="bimixt"; version="1.0"; sha256="0nhszpzjqy8z3vngl5jdzqxzshnn92wgi0ci5n3n5kzi24xkfrzc"; depends=[pROC]; };
-  binGroup = derive2 { name="binGroup"; version="2.1-1"; sha256="1rwmsrm4ghpvb1vldph2frwglfvajwyj7bzi1f6mhnm9mrg80blj"; depends=[partitions]; };
+  binGroup = derive2 { name="binGroup"; version="2.2-1"; sha256="0cb7j6b0s3y56mv1967awwri0kv0rf3sr3vwf9gc2zbjggxi9ffp"; depends=[partitions Rdpack]; };
   binMto = derive2 { name="binMto"; version="0.0-7"; sha256="0rg9rsdy14jx7zjv60krcz1vh0sxqimsai0wynhx2sx0kydw4ngy"; depends=[mvtnorm]; };
   binaryGP = derive2 { name="binaryGP"; version="0.2"; sha256="0i4xi0gxk0lamjdygyx0azdp3kfqmva1g20nl3p65w4yx77m88d6"; depends=[GPfit lhs logitnorm nloptr Rcpp RcppArmadillo]; };
   binaryLogic = derive2 { name="binaryLogic"; version="0.3.9"; sha256="19ig9qgjjnivfihjy41pc13qlrb95679mmk4zks5lbbri8qi4qxj"; depends=[]; };
+  binb = derive2 { name="binb"; version="0.0.3"; sha256="14fzsaxlh0kl85gapw9xizgd201zbbcqh2hngiqap6fzha73gvc8"; depends=[knitr rmarkdown]; };
   binda = derive2 { name="binda"; version="1.0.3"; sha256="15rhxnlif7agblzd09gyllkqkf5d8cc75b4vmp7grx8a6y7w47g0"; depends=[entropy]; };
   bindata = derive2 { name="bindata"; version="0.9-19"; sha256="15ya21fz1kvq4qsppkn9ypiqvaq8q4vszdcgcymampa7zc07z2ld"; depends=[e1071 mvtnorm]; };
   bindr = derive2 { name="bindr"; version="0.1.1"; sha256="1l05fpk2yql3jka321c0bdgx6mqq9pvfrg2844lbjfpbgjkmqy3w"; depends=[]; };
@@ -4675,9 +4877,10 @@ in with self; {
   binequality = derive2 { name="binequality"; version="1.0.3"; sha256="0hhcmw1mq785zylcxghfnazi3xvnl7sqpqll8fqdk064a4drqkw1"; depends=[gamlss gamlss_cens gamlss_dist ineq survival]; };
   binford = derive2 { name="binford"; version="0.1.0"; sha256="04mpdvynlm4gddybys04k0446gc9hyq0vaxr6a525p76ls5aw4b1"; depends=[]; };
   bingat = derive2 { name="bingat"; version="1.3"; sha256="1y68rgafipfad78yrzcygdszgy1d5q739kap06pzr78bn3i8hiwa"; depends=[doParallel foreach gplots matrixStats network vegan]; };
-  binhf = derive2 { name="binhf"; version="1.0-2"; sha256="040ss4jwqar4b5wb96gpi41xhmlqcbvs4vphxmfj8xs12hd7r6wl"; depends=[adlift EbayesThresh wavethresh]; };
+  binhf = derive2 { name="binhf"; version="1.0-3"; sha256="1vdw2s8zddp7gad8l3c4jpmnjcc0f5wpqbrp6gp9lgp1c3qa505y"; depends=[adlift EbayesThresh wavethresh]; };
+  binman = derive2 { name="binman"; version="0.1.1"; sha256="0hm0h285p4v9lhrqjy8s22f1s1vmfpfla5iaycpj8vw3qb3632az"; depends=[assertthat httr jsonlite rappdirs semver xml2 yaml]; };
   binneR = derive2 { name="binneR"; version="1.1.1"; sha256="07cfcp9jj5bks8kmxvir9y9z7fj44hvy1wyrg4jy029dvkz8g2ki"; depends=[dplyr magrittr mzR plyr tidyr]; };
-  binnednp = derive2 { name="binnednp"; version="0.1.0"; sha256="0cfgz6828b2525dmph5n4zxdgkbx0nsrm4k2azhw1xfi3pz4z6ga"; depends=[fitdistrplus kedd mclust nor1mix Rcpp Rdpack]; };
+  binnednp = derive2 { name="binnednp"; version="0.2.0"; sha256="1dklymwsz0l0xklmvq34mf11chd2hm91r5qa031zjf1hsm3gplh8"; depends=[fitdistrplus kedd mclust nor1mix Rcpp Rdpack]; };
   binom = derive2 { name="binom"; version="1.1-1"; sha256="0mjj92dqf5q69jxzqya4izb1mly3mkydbnmlm4wb3zqqg82a324c"; depends=[]; };
   binomSamSize = derive2 { name="binomSamSize"; version="0.1-5"; sha256="1an6dcqsjh5r0w4kc3n6yfvvha5qhrb2i4bpf7g5ykhl3i60zfcc"; depends=[binom]; };
   binomen = derive2 { name="binomen"; version="0.1.2"; sha256="0w1m5b2qvq3g28hahfgkq7wrrjqy43x1x4kvrrrf284s5ka90531"; depends=[dplyr jsonlite lazyeval]; };
@@ -4691,7 +4894,7 @@ in with self; {
   bio3d = derive2 { name="bio3d"; version="2.3-4"; sha256="1zmswa9xs81lbrlkkgi8dvv9xpf0ynqjqwy1k36szvfb8ar9mczr"; depends=[Rcpp]; };
   bioOED = derive2 { name="bioOED"; version="0.1.4"; sha256="1rjcqrni5xag97pxfsf40isr2c8pkqsvihf86phak8ngwl7qdgmc"; depends=[bioinactivation corrplot dplyr FME ggplot2 MEIGOR]; };
   bioPN = derive2 { name="bioPN"; version="1.2.0"; sha256="0mvqgsfc7d4h6npgg728chyp5jcsf49xhnq8cgjxfzmdayr1fwr8"; depends=[]; };
-  bioacoustics = derive2 { name="bioacoustics"; version="0.1.2"; sha256="0xhlmcfb7ll4w655dsq6vdjn6yl2imrw6da2xg5csk2s9yg059wq"; depends=[htmltools moments Rcpp stringr tuneR]; };
+  bioacoustics = derive2 { name="bioacoustics"; version="0.1.5"; sha256="159dyqj5r5s4673nkcvv432gcc17f0qygnyjjd6mq6l7a38zb017"; depends=[htmltools moments Rcpp stringr tuneR]; };
   biofiles = derive2 { name="biofiles"; version="1.0.0"; sha256="1bglgl2jcp6jy3f7xwndil56i98xx4kn518s3fqdixw7n5ibmqd2"; depends=[assertthat BiocGenerics Biostrings foreach GenomeInfoDb GenomicRanges IRanges iterators Rcpp RCurl reutils S4Vectors XVector]; };
   biogas = derive2 { name="biogas"; version="1.10.3"; sha256="1qfidjwhaxg5zplzkldhj4zqg81xrcqmvh9x5km5yhyymzr6y4vs"; depends=[]; };
   biogeo = derive2 { name="biogeo"; version="1.0"; sha256="14sqgg8b06gp5dajxvyj9s3ndsk7jpkfr0mkyl2l61kgp6qx53rh"; depends=[maptools raster sp stringr vegan]; };
@@ -4708,7 +4911,7 @@ in with self; {
   biosignalEMG = derive2 { name="biosignalEMG"; version="2.1.0"; sha256="0bbkrfqkmks4z8c7rh0k43lvm71vn3fzrw3kpj012ym77whwkvay"; depends=[signal]; };
   biotic = derive2 { name="biotic"; version="0.1.2"; sha256="1p18jkdd263dgk90626n9awkj6m4zn1n7897596fzrzrahksa978"; depends=[]; };
   biotools = derive2 { name="biotools"; version="3.1"; sha256="15y3ccmj1gslzc0lp0gvc66hf0yigx3zkqnw46crgrizjm2kmjay"; depends=[boot lattice MASS rpanel SpatialEpi tkrplot]; };
-  bipartite = derive2 { name="bipartite"; version="2.08"; sha256="16j70ikzprjsm81w9bqbp26xxf14ckw654dy7c5hkz24x62qsx2i"; depends=[fields igraph MASS permute sna vegan]; };
+  bipartite = derive2 { name="bipartite"; version="2.11"; sha256="1ahn696g881dc9mnf67pglf0kskfk2zqkj2afvinqxmwal827f72"; depends=[fields igraph MASS permute sna vegan]; };
   biplotbootGUI = derive2 { name="biplotbootGUI"; version="1.1"; sha256="0k92z9iavvq5v56x2hgkmrf339xl7ns1pvpqb4ban8r1j8glzawi"; depends=[cluster dendroextras MASS rgl shapes tcltk2 tkrplot]; };
   birdnik = derive2 { name="birdnik"; version="0.1.1"; sha256="17szs4yh3gmf6glwldbk9bhk6f40si2zv53zvgqmg3lbl3z09dv1"; depends=[httr]; };
   birdring = derive2 { name="birdring"; version="1.3"; sha256="1vlivapmgq3kz2zz795c7hcfpibnqcfnxp7m42di37yngqc90q87"; depends=[geosphere ks lazyData raster rgdal rgeos rworldmap rworldxtra sp]; };
@@ -4722,6 +4925,8 @@ in with self; {
   bitops = derive2 { name="bitops"; version="1.0-6"; sha256="176nr5wpnkavn5z0yy9f7d47l37ndnn2w3gv854xav8nnybi6wwv"; depends=[]; };
   bitrugs = derive2 { name="bitrugs"; version="0.1"; sha256="0sqgp05b902mdldr4ckz4knmkbsqvgl1vx0l792cn2r437yqlgp3"; depends=[]; };
   bivarRIpower = derive2 { name="bivarRIpower"; version="1.2"; sha256="0vgi0476rwali6k8bkp317jawzq5pf04v75xmycpmadb7drnpzy0"; depends=[]; };
+  bivariate = derive2 { name="bivariate"; version="0.2.2"; sha256="1kf34gdhi0cnngwp3xgk3qmiqxav8qldign93mxygxx8as2za00x"; depends=[KernSmooth mvtnorm]; };
+  bivgeom = derive2 { name="bivgeom"; version="1.0"; sha256="1cn8k7q011whr4f7zig85dsrkz04614z9ns2ky6k6i16s5n3glxy"; depends=[bbmle copula]; };
   bivrp = derive2 { name="bivrp"; version="1.1"; sha256="0ycb3ppz8j6wd8ha52wy8xw0n5a5w4f46j6gk4hy151yslr00qay"; depends=[MASS]; };
   biwavelet = derive2 { name="biwavelet"; version="0.20.17"; sha256="183h9mdlpizikg1xnrnd03hbij4fnf5ibsad4jcfmh6d73qcgn9b"; depends=[fields foreach Rcpp]; };
   biwt = derive2 { name="biwt"; version="1.0"; sha256="1mb3x8ky3x8j4n8d859i7byyjyfzq035i674b2dmdca6mn7paa14"; depends=[MASS rrcov]; };
@@ -4730,55 +4935,57 @@ in with self; {
   bkmr = derive2 { name="bkmr"; version="0.2.0"; sha256="0dk6dn73bqlvwinn3aginls4533931xcr3h59k0w60yxs3v8yakv"; depends=[dplyr fields magrittr MASS nlme tidyr tmvtnorm truncnorm]; };
   blackbox = derive2 { name="blackbox"; version="1.1.25"; sha256="1xjljxvh8jg5gnfwdb6f8ifn5s30dxjlnbal97kinq0ad33lvs48"; depends=[foreach geometry lattice MASS nloptr numDeriv pbapply proxy rcdd Rcpp RcppEigen spaMM]; };
   blandr = derive2 { name="blandr"; version="0.5.1"; sha256="1rqas71hlf000b3z824d8ljshf8bx91bbrzaxxnx5n3chv19w6z6"; depends=[ggplot2 jmvcore knitr R6 rmarkdown stringr]; };
-  blastula = derive2 { name="blastula"; version="0.2.0"; sha256="11vaqsfm0kszx3iq38c8vbqnwkfk77lv5021l2zq9iaxz9d83s7k"; depends=[commonmark downloader dplyr ggplot2 glue htmltools httr knitr magrittr purrr rlang stringr tibble tidyr]; };
+  blastula = derive2 { name="blastula"; version="0.2.1"; sha256="1w9g858c6p7qzv86pfndycvpgv6k63r85wlq11249mi2zqzvh7rl"; depends=[commonmark downloader dplyr ggplot2 glue htmltools httr magrittr stringr tidyr]; };
   blavaan = derive2 { name="blavaan"; version="0.3-2"; sha256="0rbwdxajrzr43wmqjmxw2hh390inba6nj15yfwqr25ipw0l2mwl3"; depends=[coda lavaan loo MCMCpack mnormt nonnest2]; };
   blendedLink = derive2 { name="blendedLink"; version="1.0"; sha256="19d1pnjag89jjvkl5a6wx531qjqp4cv5jk95md6jby27yr52r8vp"; depends=[]; };
   blender = derive2 { name="blender"; version="0.1.2"; sha256="1qqkfgf7fzwcz88a43cqr8bw86qda33f18dg3rv1k77gpjqr999c"; depends=[vegan]; };
+  blin = derive2 { name="blin"; version="0.0.1"; sha256="1h94azm7gli9i4v3li5c1p36p3rkcj2p5j6rqzlzf0pcqs0bsc09"; depends=[abind glmnet MASS Matrix mvtnorm]; };
   blink = derive2 { name="blink"; version="0.1.0"; sha256="0gi5dk2js3mssg2blji7yddrbmsynp9nr3qhzlpkpy15i81mg2xy"; depends=[plyr RecordLinkage stringdist]; };
   blkbox = derive2 { name="blkbox"; version="1.0"; sha256="14bl0b5w46gb7v8p94df5r56nj849r7jqisajagvd1irda3vkc7z"; depends=[bartMachine caret dplyr e1071 ggplot2 glmnet gtools kknn knitr magrittr nnet pamr party plyr pROC randomForest reshape reshape2 rJava rmarkdown shiny shinyjs stringr tibble tidyr xgboost]; };
-  blkergm = derive2 { name="blkergm"; version="1.1"; sha256="0giknhcl14b4djn5k5v5n33b7bc3f8x6lx2h4jr25kpd89aynhq5"; depends=[ergm network statnet_common]; };
   blm = derive2 { name="blm"; version="2013.2.4.4"; sha256="1w6c30cq38j4i1q4hjg12l70mhy5viw886l1lsnxyvniy113in4i"; depends=[]; };
   blme = derive2 { name="blme"; version="1.0-4"; sha256="1ca2b0248k0fj3lczn9shfjplz1sl4ay4v6djldizp2ch2vwdgy2"; depends=[lme4]; };
   blmeco = derive2 { name="blmeco"; version="1.1"; sha256="1hzg5dimzj1khygm9dv0y30mx1nf9vdhgicqdg1rvj7nf426h2ki"; depends=[arm lme4 MASS MuMIn]; };
   blob = derive2 { name="blob"; version="1.1.1"; sha256="0lsg91hk508dd95ivig2lwg62qafwnarjw68110kx63cfk4zkjxc"; depends=[prettyunits]; };
   blockTools = derive2 { name="blockTools"; version="0.6-3"; sha256="0023p0msfmp8swq4f5aff40m976np7y051x8hjizzw91hrfa4w2n"; depends=[MASS tibble]; };
-  blockcluster = derive2 { name="blockcluster"; version="4.2.6"; sha256="0dskcwdh89a24j1lr829p9rrs88l13738b1gvsmsqrcrg9z955xc"; depends=[Rcpp rtkore]; };
+  blockcluster = derive2 { name="blockcluster"; version="4.3.2"; sha256="15xp4navipxcr2pqxnxc47b0ifdazcsdkn5kmay883vzqj8c1nrb"; depends=[Rcpp rtkore]; };
+  blockingChallenge = derive2 { name="blockingChallenge"; version="1.0"; sha256="0zj649gj4djdl0wly3gh99ayk1i1rk5dawcrrlzxxh56xqf4l19i"; depends=[]; };
   blockmatrix = derive2 { name="blockmatrix"; version="1.0"; sha256="14k69ly4i8pb8z59005kaf5rpv611kk1mk96q6piyn1gz1s6sk6r"; depends=[]; };
   blockmodeling = derive2 { name="blockmodeling"; version="0.3.1"; sha256="0cbx44mg5b9w1sz32wsgjprbss4mfx79sn6m42lvminf0023ds1r"; depends=[doParallel doRNG foreach Matrix]; };
   blockmodels = derive2 { name="blockmodels"; version="1.1.1"; sha256="088629i4g63m8rnqmrv50dgpqbnxd1a4zl5wr3ga0pdpqhmd53wp"; depends=[digest Rcpp RcppArmadillo]; };
   blockrand = derive2 { name="blockrand"; version="1.3"; sha256="1090vb26w6s7iqjcal0xbb3qb6p6j46a5w25f1wjdppd1spvh7f9"; depends=[]; };
-  blocksdesign = derive2 { name="blocksdesign"; version="3.0"; sha256="17flj5glim3fa53k16p5pfl7dj12f76pgf4j6c1395xhn0qpww8i"; depends=[crossdes lme4]; };
+  blocksdesign = derive2 { name="blocksdesign"; version="3.1"; sha256="1ykh0clj5fwli40cj4jvdkmvn4i4n4iba5sbasbaqdk45dlka5sf"; depends=[crossdes lme4]; };
   blockseg = derive2 { name="blockseg"; version="0.5.0"; sha256="1zc6mvkdwjz7n0yj46c610gz2d3rwsjchbzdcg7k56j06vc9w4lp"; depends=[ggplot2 Matrix Rcpp RcppArmadillo reshape2 shiny]; };
-  blogdown = derive2 { name="blogdown"; version="0.6"; sha256="02ahyzcapsjaanjiz1j9jx2wh8w2fa7dwbraj5w7bl7bln87cs16"; depends=[bookdown htmltools httpuv knitr rmarkdown servr xfun yaml]; };
+  blogdown = derive2 { name="blogdown"; version="0.9"; sha256="1ps07zrr0zzp763hrfhqrmc927cl97v7l1r617s1lqhxwcji1fkx"; depends=[bookdown htmltools httpuv knitr rmarkdown servr xfun yaml]; };
   blorr = derive2 { name="blorr"; version="0.1.0"; sha256="148x2ns7l9s7pb4ksg7h8ayn2lkr18gpfskvjasycccw1q44l8bk"; depends=[car caret checkmate cli clisymbols crayon descriptr dplyr e1071 ggplot2 glue gridExtra magrittr purrr Rcpp rlang scales shiny tibble]; };
-  blsAPI = derive2 { name="blsAPI"; version="0.1.9"; sha256="1p7s799kix396fbx8ap9vy9akwpaps37awr18qbj53n9qcm74wkp"; depends=[RCurl rjson]; };
+  blsAPI = derive2 { name="blsAPI"; version="0.2.1"; sha256="0p45g4qqaialh5m9bxgrvnc7nqmm0429syw0bml8h4h8vy4014a7"; depends=[httr rjson]; };
   bmd = derive2 { name="bmd"; version="0.5"; sha256="0d4wxyymycb416sdn272292l70s1h2m5kv568vakx3rbvb8y6agy"; depends=[drc]; };
   bmem = derive2 { name="bmem"; version="1.5"; sha256="1miiki743rraralk9dp12dsjjajj3iizcrfwmplf6xas6pl8sfk6"; depends=[Amelia lavaan MASS sem snowfall]; };
   bmeta = derive2 { name="bmeta"; version="0.1.2"; sha256="19pm60xpmlanngq4nbibp0n5m98xw24b2xghz92ly31i3mkg2n68"; depends=[forestplot R2jags]; };
   bmixture = derive2 { name="bmixture"; version="1.2"; sha256="1qyxjjhwd82a4y53nj9ww4c74hrp1v2p4ii71pa59n0pq9xkqj01"; depends=[BDgraph]; };
   bmk = derive2 { name="bmk"; version="1.0"; sha256="1wxkrlrhmsxsiraj8nyiax9bqs834ln2swykmpf40wxspkykgfdq"; depends=[coda functional plyr]; };
-  bmlm = derive2 { name="bmlm"; version="1.3.6"; sha256="0fjxz5p698izhfg14kizm04s1wslnkr8l2l19x3pz6qx8a2dcsgq"; depends=[BH ggplot2 Rcpp RcppEigen rstan StanHeaders]; };
+  bmlm = derive2 { name="bmlm"; version="1.3.8"; sha256="05h69pp9m0lsm3047y1l6r2h9v55kfb4flc60l7y6hh9ahh65h52"; depends=[BH ggplot2 Rcpp RcppEigen rstan StanHeaders]; };
   bmmix = derive2 { name="bmmix"; version="0.1-2"; sha256="00php2pgpnm9n0mnamchi6a3dgaa97kdz2ynivrf38s0vca7fqx8"; depends=[ggplot2 reshape2]; };
   bmotif = derive2 { name="bmotif"; version="1.0.0"; sha256="1zjwlsimihszg8gg7mvvi8xmzvlsdph9x6524gb28jmd24xb4gwj"; depends=[tensor]; };
   bmp = derive2 { name="bmp"; version="0.3"; sha256="0jd67r11bn98hjwgyr6gas423787xy7ji2hq7ay80blkkcj91xxx"; depends=[]; };
   bmrm = derive2 { name="bmrm"; version="3.7"; sha256="1lv4bcjri95nh4yqcp9hd3ad90lcp2drh1dwfn99i3344yw196x2"; depends=[LowRankQP lpSolve matrixStats]; };
-  bnclassify = derive2 { name="bnclassify"; version="0.4.0"; sha256="02xs0qn2bmkjw48w1m4d424x8wncgvh8kk1d1jx5r2mv04h32rs7"; depends=[assertthat BH entropy matrixStats Rcpp rpart]; };
-  bnlearn = derive2 { name="bnlearn"; version="4.3"; sha256="11zp8vf79h5a6dyijazld199pzp1lsgk3x049ykgy0bqjx2ivfvq"; depends=[]; };
+  bnclassify = derive2 { name="bnclassify"; version="0.4.1"; sha256="1mz0waxgppq0mw83ylpy028shmcbxlgli7q22i6rdwpacll2jqsy"; depends=[assertthat BH entropy matrixStats Rcpp rpart]; };
+  bnlearn = derive2 { name="bnlearn"; version="4.4"; sha256="0nyp8qprp40hn6hbjx869603hdl0lpsdikrdb3jscy9pb49fz5di"; depends=[]; };
   bnnSurvival = derive2 { name="bnnSurvival"; version="0.1.5"; sha256="1d9jmfx0id4lmw122zga7hb52vlfdfqn4amhzpsmhyck99rv92j4"; depends=[pec prodlim Rcpp]; };
   bnormnlr = derive2 { name="bnormnlr"; version="1.0"; sha256="0l2r7vqikak47nr6spdzgjzhvmkr9dc61lfnxybmajvcyy6ymqs9"; depends=[mvtnorm numDeriv]; };
   bnpmr = derive2 { name="bnpmr"; version="1.2"; sha256="0vpqhs1h2mphn9w5yngb7lxvmzrhn7mkj7ca6hykhhg48s2ra98g"; depends=[]; };
   bnpsd = derive2 { name="bnpsd"; version="1.0.1"; sha256="0f9w3qcdmf6qx5k01vddmxj1vadx6d9zcgw6prpbmcf3cdy3fwg0"; depends=[]; };
   bnspatial = derive2 { name="bnspatial"; version="1.0.3"; sha256="018rb5wacjk8igyc0qbp9rk3vjz3lffx81awlba8d2npiaxq6jbv"; depends=[doParallel foreach gRain gRbase raster]; };
-  bnstruct = derive2 { name="bnstruct"; version="1.0.2"; sha256="0n4gn1vhka694wdzignawyaca0rx2l0wjgw09fw42bkrswfjvxy1"; depends=[bitops igraph Matrix]; };
+  bnstruct = derive2 { name="bnstruct"; version="1.0.4"; sha256="0xlq5y2pa7d36pj316idh84hkbgn0c8jjp0d2x1p92zfvd8xpxnw"; depends=[bitops igraph Matrix]; };
+  bnviewer = derive2 { name="bnviewer"; version="0.1.0"; sha256="1f941l5j29my8zfb3dnwwpqkf1hw92ljis8jfgaq93b4ic8g7z5p"; depends=[bnlearn igraph visNetwork]; };
   boa = derive2 { name="boa"; version="1.1.8-2"; sha256="04lhqk5qfvaz1jk90glr2yi5vq7cdy0w8m6g2lnzk359l9y41zhp"; depends=[]; };
   bodenmiller = derive2 { name="bodenmiller"; version="0.1"; sha256="0gqrjscgq4qgk7yl32w0965yscc1py9klr49s8q8hkzyihlwzim2"; depends=[]; };
   boilerpipeR = derive2 { name="boilerpipeR"; version="1.3"; sha256="0467bjqhdmi3p02fp0r7rgm00x9ry464f2hniav990qzsw8i16q6"; depends=[rJava]; };
-  bold = derive2 { name="bold"; version="0.5.0"; sha256="0gdmb3zsspcp594d32yzqhdpw4dwg7a3pfm7kgbghz368yw662gl"; depends=[crul data_table jsonlite plyr reshape stringr tibble xml2]; };
-  bomrang = derive2 { name="bomrang"; version="0.2.1"; sha256="1xivym3imf9gyp88yangyh0023sycy4n8iy578msikjk487iq0w9"; depends=[curl data_table dplyr foreign hoardr httr janitor jsonlite magrittr raster readr rgdal rvest tidyr xml2]; };
+  bold = derive2 { name="bold"; version="0.8.0"; sha256="16w623k83xydgj2m0qyxc2s08226nvqrlfj242ix4lb51kghxy3j"; depends=[crul data_table jsonlite plyr reshape stringr tibble xml2]; };
+  bomrang = derive2 { name="bomrang"; version="0.4.0"; sha256="16rc60pzphbxmijff5rk3vp8ara9vy1bk48m55drpqqdc3sbc0g3"; depends=[curl data_table dplyr foreign hoardr httr janitor jsonlite lubridate magrittr raster readr rgdal rvest tidyr xml2]; };
   bookdown = derive2 { name="bookdown"; version="0.7"; sha256="1b3fw1f41zph5yw3kynb47aijq53vhaa6mnnvxly72zamyzdf95q"; depends=[htmltools knitr rmarkdown tinytex xfun yaml]; };
-  bookdownplus = derive2 { name="bookdownplus"; version="1.3.2"; sha256="0vkivgjfmqy2xfs75w8ylkpgcvca294q61jrhbpg24vnll3c281n"; depends=[bookdown knitr yaml]; };
+  bookdownplus = derive2 { name="bookdownplus"; version="1.5.2"; sha256="09h45h9dry7ask3pg15c7zc9pghd8rdcp1cnaqgcrs6q6jgscld4"; depends=[bookdown]; };
   boostSeq = derive2 { name="boostSeq"; version="1.0"; sha256="0sikyzhn1i6f6n7jnk1kb82j0x72rj8g5cimp2qx3fxz33i0asx6"; depends=[genetics lpSolveAPI]; };
-  boostmtree = derive2 { name="boostmtree"; version="1.2.1"; sha256="0k79zfkck1plcd51sk6i8n5qh7hpnhchkqqhjn460hf0rl2mcjab"; depends=[nlme randomForestSRC]; };
+  boostmtree = derive2 { name="boostmtree"; version="1.3.0"; sha256="0q1lgjvbc15m2gygnmh63m0wy2c6x25iwrh9cbn0baq598hnr7j9"; depends=[nlme randomForestSRC]; };
   boostr = derive2 { name="boostr"; version="1.0.0"; sha256="123ag8m042i1dhd4i5pqayqxbkfdj4z0kq2fyhxfy92a7550gib2"; depends=[foreach iterators stringr]; };
   boot = derive2 { name="boot"; version="1.3-20"; sha256="0ai1qpm0p4z07xr0dvag8sdn9jrxcwanrsk9khzmww094jvr1jxd"; depends=[]; };
   bootES = derive2 { name="bootES"; version="1.2"; sha256="0hcaw1v80zspdsy4wr464lmgq33807i2f6n2dc3r7qqwa80g4zz0"; depends=[boot]; };
@@ -4787,16 +4994,17 @@ in with self; {
   bootSVD = derive2 { name="bootSVD"; version="0.5"; sha256="14xwbrpqj3j1xpsppgjxpn9ggsns2n1kmni9vn30vgy68zwvs2wy"; depends=[ff]; };
   bootStepAIC = derive2 { name="bootStepAIC"; version="1.2-0"; sha256="0p6v4zjsaj1p6c678010fazdh40lpv0rvhczd1halj8aic98avdx"; depends=[MASS]; };
   bootcluster = derive2 { name="bootcluster"; version="0.1.0"; sha256="1mx08p0csz06mq55bdg4vgnqa9khdgqrz4jnm48c24pg8rpaj98b"; depends=[cluster flexclust fpc mclust plyr sets]; };
-  bootnet = derive2 { name="bootnet"; version="1.0.1"; sha256="1r5kbcycdlb8g4zs5vsrmcxl20a6x2kj47ybz6h1s83rqiylxg1b"; depends=[abind corpcor dplyr ggplot2 gtools huge igraph IsingFit IsingSampler Matrix mgm mvtnorm parcor qgraph relaimpo tidyr]; };
+  bootnet = derive2 { name="bootnet"; version="1.1.0"; sha256="12r9xbsixj8bxjgn1cn0y2zvxmcllmz15cyflf7vnhn8lrphx309"; depends=[abind BDgraph corpcor dplyr ggplot2 graphicalVAR gtools huge igraph IsingFit IsingSampler Matrix mgm mvtnorm NetworkToolbox parcor pbapply psych qgraph relaimpo tidyr]; };
   bootruin = derive2 { name="bootruin"; version="1.2-4"; sha256="1gbvh99snchipf13kjhymcx60s2kni23y7lv8lhzd3d402grp68h"; depends=[]; };
   bootsPLS = derive2 { name="bootsPLS"; version="1.1.2"; sha256="19ikz3l0qds25hgcxvhsvqy6jyshcdvnxw6774ifl9ylngxvlfh0"; depends=[mixOmics]; };
   bootspecdens = derive2 { name="bootspecdens"; version="3.0"; sha256="0hnxhfsc3ac4153lrjlxan8xi4sg1glwb5947ps6pkkyhixm0kc1"; depends=[MASS]; };
   bootstrap = derive2 { name="bootstrap"; version="2017.2"; sha256="08lmsy7k8wsgv89yc904c6fidcymr1ma2ry4fl0p69p21v4iiwa4"; depends=[]; };
   boottol = derive2 { name="boottol"; version="2.0"; sha256="01dps9rifzrlfm4lvi7w99phfi87b7khx940kpsr4m9s168a2dzv"; depends=[boot plyr]; };
-  boral = derive2 { name="boral"; version="1.6.1"; sha256="1336nfgr5ni42pkikknlrhiqfi6avyl54ik2173vaxkgxcrlypzz"; depends=[abind coda fishMod MASS mvtnorm R2jags]; };
+  bor = derive2 { name="bor"; version="0.1.0"; sha256="1r5jacmin0cq9zipxa9nmp3jnh6wsddd4wnzw2n5sggnf24ryp8g"; depends=[]; };
+  boral = derive2 { name="boral"; version="1.7"; sha256="0li7jdzgq2ffhrf0nly96syp72vv3c6rbcni19kk2wgyv16mjwcm"; depends=[abind coda fishMod MASS mvtnorm R2jags]; };
   bossMaps = derive2 { name="bossMaps"; version="0.1.0"; sha256="0w4ks1xicvfm8ari4fr18wjm0qj2nxdsapl6lpfjz8l1id0y78cg"; depends=[doParallel foreach ggplot2 raster rgdal rgeos scales sp tidyr]; };
   boussinesq = derive2 { name="boussinesq"; version="1.0.3"; sha256="1j1jarc3j5rby1wvj1raj779c1ka5w68z7v3q8xhzjcaccrjhzxk"; depends=[]; };
-  boxcoxmix = derive2 { name="boxcoxmix"; version="0.20"; sha256="1s6mkybr88dkn9mandmfrd0j7r3zrfjqgrdfywv54lasl1gcijzk"; depends=[npmlreg qicharts statmod]; };
+  boxcoxmix = derive2 { name="boxcoxmix"; version="0.21"; sha256="0pav4nksh1zbic11l38jyyq8i58hfvwzkp88ra6nny3jn2axzipl"; depends=[npmlreg qicharts statmod]; };
   boxoffice = derive2 { name="boxoffice"; version="1.1.0"; sha256="08b897dp5cfv6f30k2pdvh8y5n1981msnjr6lfs4dzfc1i6y2zfy"; depends=[httr rvest]; };
   boxplotdbl = derive2 { name="boxplotdbl"; version="1.3.0"; sha256="1y1b45q69sxbszd83s8ch10z4i55h34ixm8q7yxr7byx3px8y65n"; depends=[]; };
   boxr = derive2 { name="boxr"; version="0.3.4"; sha256="0wx3x65rk1ma8bw5h4yskr7ii95ynkm7il22l1bj34kv9f4bfyj3"; depends=[assertthat bit64 digest dplyr httpuv httr mime rio stringr]; };
@@ -4814,6 +5022,7 @@ in with self; {
   brainKCCA = derive2 { name="brainKCCA"; version="0.1.0"; sha256="1ag3qahlba4h4126873hg2bbi6sr729mhiw22gjgr4g4jg6lhh09"; depends=[brainR CCA elasticnet kernlab knitr misc3d oro_nifti rgl]; };
   brainR = derive2 { name="brainR"; version="1.5.1"; sha256="0ih4vwy445ciyyvf8snm42vg7rzzf6vn9qkbhj0yyd8sy88mgyss"; depends=[misc3d oro_nifti rgl]; };
   brainwaver = derive2 { name="brainwaver"; version="1.6"; sha256="0r79dpd9bbbn34rm29512srzj3m29qgvbryvrp1mwv8mmcsh6ij6"; depends=[waveslim]; };
+  brandwatchR = derive2 { name="brandwatchR"; version="0.3.0"; sha256="10bccsaswsq06wdrxqg71amzx5rabmgfi4n074y651r2c1pyy98w"; depends=[data_table httr jsonlite]; };
   brant = derive2 { name="brant"; version="0.2-0"; sha256="1hdwdrdl6ad112zd7q248am3qk19alnj647nrk9xxxgd7s6a9pnb"; depends=[MASS Matrix]; };
   brazilmaps = derive2 { name="brazilmaps"; version="0.1.0"; sha256="1nvd8x4m4m3966qph6390kqwpsrv7vy4yf6pam98xxkjbl9a41nf"; depends=[dplyr ggplot2 magrittr sf sp]; };
   brea = derive2 { name="brea"; version="0.2.0"; sha256="0mb043fdhxrg9gyf4g55ydjx37j20394nvd4d0fmiym98lccyi04"; depends=[]; };
@@ -4822,41 +5031,41 @@ in with self; {
   breakaway = derive2 { name="breakaway"; version="3.0"; sha256="0y3h7gifv279z3x77jmr97c0i3vy58m5wsr8pa2vyn26m02rbkpc"; depends=[]; };
   breakfast = derive2 { name="breakfast"; version="1.0.0"; sha256="0p0svsqphd5w99pf5c5jmak1xxl8md881lapa8aps9xr73m4x6lf"; depends=[plyr]; };
   breakpoint = derive2 { name="breakpoint"; version="1.2"; sha256="004vi1qr7iib8ykg6sp7xzv0bb841h4vsz2x0cyrhkdp41frglx9"; depends=[doParallel foreach ggplot2 MASS msm]; };
-  breathtestcore = derive2 { name="breathtestcore"; version="0.4.1"; sha256="1wd5csdkq9i78l2d9rgp2fp2sw81n0bgi0ssfd447rw6c67x4539"; depends=[assertthat broom dplyr ggfittext ggplot2 MASS multcomp nlme purrr readr readxl signal stringr tibble tidyr xml2]; };
-  breathteststan = derive2 { name="breathteststan"; version="0.4.1"; sha256="0jmc3984827v656h5zk1rkpbyk56cziandsdz689brw85m01kn1l"; depends=[BH dplyr purrr Rcpp RcppEigen rstan StanHeaders stringr tibble tidyr]; };
+  breathtestcore = derive2 { name="breathtestcore"; version="0.4.5"; sha256="121s88q4gfc576gixilgahhv0dqwzwa0k5drwh344vgi033x1nhm"; depends=[assertthat broom dplyr ggfittext ggplot2 MASS multcomp nlme purrr readr readxl signal stringr tibble tidyr xml2]; };
+  breathteststan = derive2 { name="breathteststan"; version="0.4.6"; sha256="0mwrr65hkk2l3mq8fdddfnxd44av426v384gn7cx1sqdd2rbi7a7"; depends=[BH dplyr purrr Rcpp RcppEigen rstan rstantools StanHeaders stringr tibble tidyr]; };
   brew = derive2 { name="brew"; version="1.0-6"; sha256="1vghazbcha8gvkwwcdagjvzx6yl8zm7kgr0i9wxr4jng06d1l3fp"; depends=[]; };
   brglm = derive2 { name="brglm"; version="0.6.1"; sha256="17r3az6za98v2r06aak77kypdaqssc9wxcc6m6vb20y7xm8dp1mp"; depends=[profileModel]; };
   brglm2 = derive2 { name="brglm2"; version="0.1.8"; sha256="017m7nlh29p271dhvx19l6042qfs48hqs947kjmpc7ykzv5461y3"; depends=[enrichwith lpSolveAPI MASS Matrix nnet]; };
   bridgedist = derive2 { name="bridgedist"; version="0.1.0"; sha256="0hqkpwpi3nv6mfhljl65zcflf4wy72ag36hdam6s7kynfj41qz6w"; depends=[]; };
   bridger2 = derive2 { name="bridger2"; version="0.1.0"; sha256="0clp42nnbvd01n65azdi2ghp0mfqwsipzdl2d30q04lcvfkdpxrf"; depends=[BSDA data_table ggplot2 outliers plotly shiny shinydashboard]; };
-  bridgesampling = derive2 { name="bridgesampling"; version="0.4-0"; sha256="1gv2h2wgj1ym7qpmxmj5s3q2xsz217ijwdx70qnh4ijvacsvaxwm"; depends=[Brobdingnag coda Matrix mvtnorm scales stringr]; };
+  bridgesampling = derive2 { name="bridgesampling"; version="0.6-0"; sha256="1526lsqhgjh0v8jb2sb7rw9jxj2kkbidsqapqp309a2f05bsfb8p"; depends=[Brobdingnag coda Matrix mvtnorm scales stringr]; };
   briskaR = derive2 { name="briskaR"; version="0.1.2"; sha256="1y9sabj7pfgyvv6s3bbvrb0xhjhwc4pcfsfx847kqdajid92qx8w"; depends=[deldir fftwtools fields MASS mvtnorm pracma raster rgdal rgeos sp]; };
   brlrmr = derive2 { name="brlrmr"; version="0.1.5"; sha256="14dnmh062fw11bm236ilaqs6ss4ywajvsk3sxj0zwqk2bjf7y7vh"; depends=[boot brglm MASS profileModel Rcpp]; };
   brm = derive2 { name="brm"; version="1.0"; sha256="0h4kgig28hkqv1amadznc0n9256dx613rxbn8s8si11ygx79x2dd"; depends=[]; };
-  brms = derive2 { name="brms"; version="2.3.1"; sha256="134qixmk9r5bq6zmbyrhzyrrd60ihn5m7nkvblj7im9n8gh415wl"; depends=[abind backports bayesplot bridgesampling coda ggplot2 loo Matrix matrixStats mgcv nleqslv nlme Rcpp rstan rstantools shinystan]; };
-  brnn = derive2 { name="brnn"; version="0.6"; sha256="0q3f3cbl89hgpav7bn54s13cysgz8fi0zm8byc9rgz0sqkjrxval"; depends=[Formula]; };
-  broman = derive2 { name="broman"; version="0.67-4"; sha256="1jv1543zq74zjdrmhkcrjwxhn9bmsmmwadd9rjnn18svnrbnlq0g"; depends=[assertthat ggplot2 jsonlite RPushbullet]; };
-  broom = derive2 { name="broom"; version="0.4.5"; sha256="1mrrqqw1bmjf2v88ziqwb5y86g29h0a3rsx2jpw0hrzrzb8i5kcb"; depends=[dplyr nlme plyr psych reshape2 stringr tidyr]; };
+  brms = derive2 { name="brms"; version="2.6.0"; sha256="0zahc6p5k6sji172a148j8bcz8bzg7wbdzmaard4wr07dxqpinhj"; depends=[abind backports bayesplot bridgesampling coda ggplot2 loo Matrix matrixStats mgcv nleqslv nlme Rcpp rstan rstantools shinystan]; };
+  brnn = derive2 { name="brnn"; version="0.7"; sha256="1bfqr21szlpn1izjwlzih9j7f34x31zrapckk184rvynbsbgg7g6"; depends=[Formula]; };
+  broman = derive2 { name="broman"; version="0.68-2"; sha256="0h6lrxrcjggrkv1dnbqsancjj69072nacaaazibl1v99rawanghi"; depends=[assertthat ggplot2 jsonlite RPushbullet]; };
+  broom = derive2 { name="broom"; version="0.5.0"; sha256="1r3831vq0fd5sh5841xr844sghg88z7ws91hg4jgnzbbkxfjp4ag"; depends=[backports dplyr nlme purrr reshape2 stringr tibble tidyr]; };
+  broom_mixed = derive2 { name="broom.mixed"; version="0.2.3"; sha256="0f25wjhvvc5rw5sc8ya9agx9y7sm3sq67jj3z5503kdgksk2d1br"; depends=[broom coda dplyr glmmTMB nlme plyr purrr reshape2 stringr tibble tidyr TMB]; };
   brotli = derive2 { name="brotli"; version="1.2"; sha256="07rgdgxh9bvn0qavpclxmkglwyl6ndqasxcs6j12if698dkn976b"; depends=[]; };
   brr = derive2 { name="brr"; version="1.0.0"; sha256="050ivnqcaxiyypd1sxfpy6ianhzzmvs6c77ga40g3440cvfigkgw"; depends=[gsl hypergeo pander stringr SuppDists TeachingDemos]; };
   brranching = derive2 { name="brranching"; version="0.3.0"; sha256="1mpjcp4x3gcc38irflldv0szznp7jazdn62niwvifinzhq4k7pkb"; depends=[ape crul curl phytools taxize]; };
   brt = derive2 { name="brt"; version="1.3.0"; sha256="13fn2mv66fys7w0xchh69sb6jggg5c2imk1psi3mlr1902m6ss5m"; depends=[ggplot2]; };
-  bs4Dash = derive2 { name="bs4Dash"; version="0.1.0"; sha256="0gqh51rpmqg359pv3lqg221rw9xixvgksv1yldp6sdvy0zxpp8dx"; depends=[shiny]; };
+  bs4Dash = derive2 { name="bs4Dash"; version="0.2.0"; sha256="0s893mkhkr0zvarbyzl9k5033rjxwr42k74sx2qwjgwh0indypfb"; depends=[htmltools shiny]; };
   bsam = derive2 { name="bsam"; version="1.1.2"; sha256="1m2lpqm2i4i35hzr1iylrb8skx8rsys3w542xjyqw030bs7b1rdk"; depends=[coda dplyr ggplot2 gridExtra lubridate msm mvtnorm rjags rworldxtra sp tibble]; };
   bsamGP = derive2 { name="bsamGP"; version="1.2.1"; sha256="0b4a6ll11cykqq05ys1b0y9gdhbw6y60hjclz678vy5w8jia7a1m"; depends=[ggplot2 gridExtra MASS]; };
   bsearchtools = derive2 { name="bsearchtools"; version="0.0.61"; sha256="11fqz8kdhqpc3jq34vgv3frzawgsl5y0s83rb2p54yb5yhd3p68w"; depends=[Rcpp]; };
   bshazard = derive2 { name="bshazard"; version="1.1"; sha256="1kidypyqlilf794mksjvhja8bmnd9hdhz91ywy0mcddgc6wbar4h"; depends=[Epi survival]; };
   bspec = derive2 { name="bspec"; version="1.5"; sha256="0jynvir7z4q1vrvhdn6wijdrjfrkk4544nlawabw2fnfxss91a91"; depends=[]; };
-  bsplinePsd = derive2 { name="bsplinePsd"; version="0.5.0"; sha256="1ddvkn182r48fbjqkiskb94afy942bnl953n0cghza4wkbkdfprd"; depends=[Rcpp]; };
+  bsplinePsd = derive2 { name="bsplinePsd"; version="0.6.0"; sha256="0f785l02hiq3f7anxqhm09f7lrqgkkqhly7f1x78cxm22hvrqyhg"; depends=[Rcpp]; };
   bsplus = derive2 { name="bsplus"; version="0.1.1"; sha256="0s3407z48b7sdbkjkqcjk2j1wvs0z7chvdjzphil83l0vp3j5x0s"; depends=[glue htmltools lubridate magrittr purrr rmarkdown stringr]; };
   bspmma = derive2 { name="bspmma"; version="0.1-1"; sha256="0bd6221rrbxjvabf1lqr9nl9s0qwav47gc56sxdw32pd99j9x5a9"; depends=[]; };
   bssm = derive2 { name="bssm"; version="0.1.5"; sha256="07bhngqwm2qknsk9910273wgkl1f3c564ab1p90kvyi8syc64mqg"; depends=[BH coda diagis ggplot2 ramcmc Rcpp RcppArmadillo sitmo]; };
   bssn = derive2 { name="bssn"; version="0.7"; sha256="1g2xhb7bqapwd5zbc4bl4h1fskd7k6gd0rz74hnydiiwxrwiihf6"; depends=[sn]; };
-  bst = derive2 { name="bst"; version="0.3-14"; sha256="02rnnv3f89329kw81a1v88wjzrfjshqjijw5hp3zyydcsfa3j088"; depends=[doParallel foreach gbm rpart]; };
+  bst = derive2 { name="bst"; version="0.3-15"; sha256="02378s18g0asmx00rghmqm5gb4dml530aln8r141f6wxgn9711fh"; depends=[doParallel foreach gbm rpart]; };
   bsts = derive2 { name="bsts"; version="0.8.0"; sha256="06v8x2wgasbh00vvwn859y6rqp7z5ib43vvhh9qdkkrmdz4gw6sr"; depends=[BH Boom BoomSpikeSlab xts zoo]; };
   btb = derive2 { name="btb"; version="0.1.30"; sha256="1f94zzpg3q6ldd436cv1wqpfbpw5f706073wk38a4dkg57dwrbgi"; depends=[BH Rcpp RcppArmadillo RcppParallel sf sp]; };
-  btergm = derive2 { name="btergm"; version="1.9.1"; sha256="1bvq6v35fpfd4vhbq1c5jb4gg3iyfflbv0n89gv4hzm80xx50rs9"; depends=[boot coda ergm ggplot2 igraph Matrix network ROCR RSiena sna speedglm statnet statnet_common texreg xergm_common]; };
-  btf = derive2 { name="btf"; version="1.2"; sha256="110p7rk43g48yrnr6c9xkyzsh3kqdywsvi23dav89hl7sxahrf75"; depends=[coda Matrix Rcpp RcppEigen]; };
+  btergm = derive2 { name="btergm"; version="1.9.3"; sha256="0nailhw4n9rqqv1i2l41qz4gx0mr7viycdmd4kc00gm3nk4721gp"; depends=[boot coda ergm ggplot2 igraph Matrix network ROCR RSiena sna speedglm texreg xergm_common]; };
   bucky = derive2 { name="bucky"; version="1.0.4"; sha256="1irzv1ib40h0ijlpawp0lac572nik3x77xcdi1vyncvinc9pcmr8"; depends=[lmtest sandwich]; };
   bujar = derive2 { name="bujar"; version="0.2-3"; sha256="0gc5wrnhark1gawl4qqjh179xaxjal5r7qq4ilx30yn3qhzrqdaz"; depends=[bst earth elasticnet gbm mboost mda modeltools mpath rms]; };
   bulletr = derive2 { name="bulletr"; version="0.1"; sha256="181rnrp62almf08gr41qnrnq8qnbqraqdvj4zixdh8fachsq2imp"; depends=[dplyr ggplot2 plotly plyr reshape2 robustbase smoother xml2 zoo]; };
@@ -4866,26 +5075,26 @@ in with self; {
   bupaR = derive2 { name="bupaR"; version="0.4.1"; sha256="0gf9qzk826zq15w8fl9skg1kpmz0s87k5l1rs45ggdwg49q5pq48"; depends=[data_table dplyr eventdataR forcats glue magrittr miniUI purrr rlang shiny tidyr]; };
   burnr = derive2 { name="burnr"; version="0.2.2"; sha256="1b5ys0jm2dmiz1jd5f3907dhv44wh60kmfdfhj3fzx8rk7zllm06"; depends=[ggplot2 MASS plyr reshape2]; };
   bursts = derive2 { name="bursts"; version="1.0-1"; sha256="172g09d1vmwl83xs6gr4gfblqmx3apvblpzdr5d7fcw1ybsx0kj6"; depends=[]; };
-  bustt = derive2 { name="bustt"; version="0.1.0"; sha256="16y1si8bk7ar6h82bb8l3xq8k2azlxdz4aa56kh33nrajvbfc1fg"; depends=[dplyr lubridate rlang tibble tidyr]; };
   bvarsv = derive2 { name="bvarsv"; version="1.1"; sha256="1bv4fbbi8bn7sqqpjlf8w5jpgydjr15wv5v9940wc42yk792yjrx"; depends=[Rcpp RcppArmadillo]; };
   bvenn = derive2 { name="bvenn"; version="0.1"; sha256="1xrya49w5bd2b7plfxpqla60b2828rkm0rjmc4qnqzvrahsbal0y"; depends=[]; };
   bvls = derive2 { name="bvls"; version="1.4"; sha256="18aaf7kk5mks3a59wwqhm1ckpn6s704l9m5nzy0x5iw0s98ijbm2"; depends=[]; };
   bvpSolve = derive2 { name="bvpSolve"; version="1.3.3"; sha256="1q5sh3kj1c07zq7mx8sh4ggp1fvwh86394qrc3ildj4wrbakmzib"; depends=[deSolve rootSolve]; };
-  bw = derive2 { name="bw"; version="1.0.0"; sha256="169mqd0vj0ia0zrfnv3g5gm9vzpj5mrxrwhfv5kh5a720inlcwj1"; depends=[ggplot2 gridExtra Rcpp reshape2 survey]; };
   bytescircle = derive2 { name="bytescircle"; version="1.1"; sha256="0c83d37kijcvr00pc4qqdci14cpbg6988izyjfjk1yliavyc6mwf"; depends=[]; };
   c060 = derive2 { name="c060"; version="0.2-4"; sha256="1yzy0p6041rygqfwzb8dpyc7jq12javmhlvdcmmc7p59bbk7wv3j"; depends=[glmnet lattice mlegp penalizedSVM peperr survival tgp]; };
-  c212 = derive2 { name="c212"; version="0.93"; sha256="10gwkr2w05bi27zwvspm3g31a1dpqbh1i52vyrfaamqkxypa11nh"; depends=[coda]; };
+  c14bazAAR = derive2 { name="c14bazAAR"; version="1.0.2"; sha256="03siiadhj8wp80jhm99lw7xb1p24yk9ycx2kp085a7xj82hl22jj"; depends=[crayon data_table dplyr magrittr pbapply RCurl rlang tibble tidyr]; };
+  c212 = derive2 { name="c212"; version="0.94"; sha256="04vd0yzilzq078s8498085bryhhi0h19v0xykd1pzn680flm5lx8"; depends=[coda]; };
   c2c = derive2 { name="c2c"; version="0.1.0"; sha256="149np512wjnlr9glmqxpiamf6c31v0bh6ym95jpdhk0iw3ic9kvh"; depends=[]; };
   c3 = derive2 { name="c3"; version="0.2.0"; sha256="1af4lrgck1bff8jjp9vwyw2rpq54d1ng13rpcqlf58asdja29s9h"; depends=[data_table dplyr htmlwidgets jsonlite lazyeval viridis]; };
   c3net = derive2 { name="c3net"; version="1.1.1"; sha256="0m4nvrs41kmlakc6m203zlncqwgj94wns8kzcb31xngjcacmcq42"; depends=[igraph]; };
-  cAIC4 = derive2 { name="cAIC4"; version="0.4"; sha256="1lv2nawrjmb89nvp308irmbnagzjxp78l6csmql6nkwcbyhwf9rh"; depends=[lme4 Matrix]; };
+  cAIC4 = derive2 { name="cAIC4"; version="0.5"; sha256="1xbij45ds0f64nj8y50dpsxvngxm004bcbs31zwicqlhf3mabf8y"; depends=[lme4 Matrix]; };
   cIRT = derive2 { name="cIRT"; version="1.2.1"; sha256="1i43pqlyzykyd1a6abg1yi7ai9ay7d2jkvnw1sa4c6q07jk56d89"; depends=[Rcpp RcppArmadillo]; };
-  cOde = derive2 { name="cOde"; version="0.3"; sha256="1r49q7qansn86wrxbhxqnn1dccd9av4lh4h5pn9kk42pls9q60nf"; depends=[Rcpp RcppArmadillo]; };
-  cRegulome = derive2 { name="cRegulome"; version="0.1.1"; sha256="0rhi4f1wkl03vh9m6hsba08cfvqjfn99xyxsykv625bgxra817bd"; depends=[AnnotationDbi clusterProfiler DBI dplyr ggplot2 ggridges httr magrittr org_Hs_eg_db purrr R_utils reshape2 RSQLite tidyr UpSetR VennDiagram]; };
-  ca = derive2 { name="ca"; version="0.70"; sha256="0730c7nk49hz0k1i5nnhq2j3wbhrlhr1qvb50mk8vmqkbhb1pz1l"; depends=[]; };
+  cOde = derive2 { name="cOde"; version="0.4.1"; sha256="1hvanmbnmkrly2s3c57r2xc0w56a4jxspc15ncfzdx94k6mvnhxq"; depends=[Rcpp RcppArmadillo]; };
+  cRegulome = derive2 { name="cRegulome"; version="0.2.0"; sha256="1i5f5c2mc66gjh5dh883x9ghpnam6zva8s6y5vdy6wyih0x2r9yn"; depends=[DBI ggplot2 ggridges httr igraph R_utils RSQLite UpSetR VennDiagram]; };
+  ca = derive2 { name="ca"; version="0.71"; sha256="1ywqvj0rc9ss7yim4x09yf6l80xz4y6ggl56m0c1hc9x6wxna7h2"; depends=[]; };
+  caMST = derive2 { name="caMST"; version="0.1.0"; sha256="1xb8ka2r729sqwxhxh5qj4girh0va0faqjv1jsyn3hlbijcz78jj"; depends=[catR mstR]; };
   caRamel = derive2 { name="caRamel"; version="1.0"; sha256="0al4yk77a4bh8rjdpl841bnnjvs0sjyxqswqwik1n6y0bfr8f7pl"; depends=[geometry]; };
   caRpools = derive2 { name="caRpools"; version="0.83"; sha256="10m7fw1zfr9i6v2qg235diwf3fmfr88incxnqpvnhmqcn082mxrp"; depends=[biomaRt DESeq2 rmarkdown scatterplot3d seqinr sm VennDiagram xlsx]; };
-  caTools = derive2 { name="caTools"; version="1.17.1"; sha256="1x4szsn2qmbzpyjfdaiz2q7jwhap2gky9wq0riah74q0pzz76ank"; depends=[bitops]; };
+  caTools = derive2 { name="caTools"; version="1.17.1.1"; sha256="01hccp05gz25vhz9nnxv1c91lrxlr7drcw9xf124gggifxf2qgnm"; depends=[bitops]; };
   cabootcrs = derive2 { name="cabootcrs"; version="1.0"; sha256="0a6y04jq837k1pk8b9nhgz7rima7s8jid6vdjyfvrqshgaiabg1q"; depends=[]; };
   cacIRT = derive2 { name="cacIRT"; version="1.4"; sha256="145j6isqa8yj2nvlqkxagd076zs10ng3n44khi5p4jj77fjc8gh6"; depends=[]; };
   caesar = derive2 { name="caesar"; version="0.1.0"; sha256="1l0z64fsifx37j2h61kzygbwr3z3cncn48znrpb5cq10ma42igqf"; depends=[binhf]; };
@@ -4894,28 +5103,32 @@ in with self; {
   calACS = derive2 { name="calACS"; version="2.2.2"; sha256="0a53k2rzyjksb0ypr5zrask4a6mgiyrqx0l2z3lm218y8pk2jf1w"; depends=[]; };
   calibrar = derive2 { name="calibrar"; version="0.2.0"; sha256="1544bc5rhhc6d1mky7ngza00wwh63q07dkbzlwfgyavly8m9cplb"; depends=[cmaes foreach optimx]; };
   calibrate = derive2 { name="calibrate"; version="1.7.2"; sha256="010nb1nb9y7zhw2k6d2i2drwy5brp7b83mjj2w7i3wjp9xb6l1kq"; depends=[MASS]; };
+  calibrateBinary = derive2 { name="calibrateBinary"; version="0.1"; sha256="1k6sl4bg05piyczpk6wsva914gcmy8viyz4423gx9i6ddflb7xdb"; depends=[gelnet GPfit kernlab randtoolbox]; };
   calibrator = derive2 { name="calibrator"; version="1.2-6"; sha256="1arprrqmczbhc1gl85fh37cwpcky8vvqdh6zfza3hy21pn21i4kh"; depends=[cubature emulator]; };
-  callr = derive2 { name="callr"; version="2.0.4"; sha256="1053qqq632z94pqq2v5dynjpgyv1b1c8zvidmcllw7zn8zha8gqf"; depends=[processx R6]; };
+  callr = derive2 { name="callr"; version="3.0.0"; sha256="1rxbxy6kn7dj90z9hpppr9cnpvnxzknba2dwrdp0lrk5dh462qz3"; depends=[base64enc processx R6]; };
   calmate = derive2 { name="calmate"; version="0.12.1"; sha256="07sjbq7bcrhal52pdzsb5pfmk6a8a44wg8xn79sv4y5v74c5xaqz"; depends=[aroma_core MASS matrixStats R_filesets R_methodsS3 R_oo R_utils]; };
+  calpassapi = derive2 { name="calpassapi"; version="0.0.2"; sha256="0i81ffdfw3m15cfbag3l9s245dyhapqhy7adb3228vam3qp3n59b"; depends=[digest dplyr httr jsonlite stringr]; };
   camsRad = derive2 { name="camsRad"; version="0.3.0"; sha256="06gar6qan1ka01ngjvbpcv649yvfga697mplwn1x6qnfr4ngb7cs"; depends=[httr xml2]; };
-  camtrapR = derive2 { name="camtrapR"; version="0.99.9"; sha256="1kzy90mwmpn2yb47xp5b8s3lj8lbkg8hfw44pwfb54gqf7wi2lkm"; depends=[overlap rgdal ritis secr sp taxize]; };
+  camtrapR = derive2 { name="camtrapR"; version="1.0"; sha256="1raxxki2xkmb7mjlfsxn2fr1dvwc86n88cbkk08bwjzsizrvsz0z"; depends=[overlap rgdal ritis secr sp taxize]; };
   cancensus = derive2 { name="cancensus"; version="0.1.7"; sha256="0v3wbmdqg36zn30kgj5xbndz69x3vvr0i6ag57gz8sbbgc4nyqbr"; depends=[digest dplyr httr jsonlite rlang]; };
   cancerGI = derive2 { name="cancerGI"; version="1.0.0"; sha256="1chkcyf9m98gbn6b3vmb1baw7kii4g5vxvg2xfi7i6wwdn8sqr65"; depends=[igraph qvalue reshape2 survival systemfit]; };
   cancerTiming = derive2 { name="cancerTiming"; version="3.1.8"; sha256="1sfi8q2f5ag7iak0sf9pmqncb89w3gnxdiwjwpivkwhr28ais4mq"; depends=[gplots LearnBayes]; };
   candisc = derive2 { name="candisc"; version="0.8-0"; sha256="0hq5bwvq791rhff2c29xdjbbkcyydii1lbsy05c1fapyn88ir0mi"; depends=[car heplots]; };
   canprot = derive2 { name="canprot"; version="0.1.1"; sha256="14g7wl4p9bgwf5jm48mp676z0pwlsd2xgxjwzixri7mxxh0ivfh1"; depends=[CHNOSZ xtable]; };
-  canvasXpress = derive2 { name="canvasXpress"; version="1.19.0"; sha256="1cxfadvrm3gkrdfibwi1b7kqlc3hczyc0g72v5gkgc9hssb8j46i"; depends=[htmlwidgets]; };
+  canvasXpress = derive2 { name="canvasXpress"; version="1.20.5"; sha256="00hf905ypaclxhf11fkg5kdfllq9ljdziw8xbyj9lw7kq3xn5h22"; depends=[htmlwidgets]; };
+  cap = derive2 { name="cap"; version="1.0"; sha256="1pv8hskxjbp589dn7rx80yaa1ld76x1w37bss2fyrys1p3qr78aa"; depends=[MASS multigroup]; };
   cape = derive2 { name="cape"; version="2.0.2"; sha256="0ngm9scd3f2zcy7gy0lqk05cgbfrhhcss3mj5g6bj0byhgwd7msn"; depends=[corpcor doParallel evd fdrtool foreach HardyWeinberg igraph Matrix qpcR RColorBrewer regress shape]; };
   caper = derive2 { name="caper"; version="1.0.1"; sha256="0md0sngj7wsv2d4d7fmyyz9qqismk3ps9l3qk1blqz1yi19pq124"; depends=[ape MASS mvtnorm]; };
-  capm = derive2 { name="capm"; version="0.11.0"; sha256="1yw7h1r5m4md8yv0fn1j4wxvhwybifqyvrn8ip3fl32kxbwsmnvz"; depends=[deSolve FME ggplot2 maptools reshape2 rgdal shiny sp survey]; };
+  capm = derive2 { name="capm"; version="0.13.5"; sha256="01jl1xqlycy726jbkkq39n3j8yia7i5x2lmkg285c4zlp350vnbg"; depends=[circlize deSolve dplyr FME ggplot2 magrittr sf survey tidyr]; };
   capn = derive2 { name="capn"; version="1.0.0"; sha256="14vfk00xyx0az3whmxjpcv1785lf0gx81w7qc54i3wcfp3i22kcr"; depends=[]; };
   captioner = derive2 { name="captioner"; version="2.2.3"; sha256="0xg72pmgm84f0v45phfwxpsslhf12nhn1swmrj1yifj7g9sjvybj"; depends=[]; };
   captr = derive2 { name="captr"; version="0.3.0"; sha256="13j2nq9hm37g4h5fjdpz7kix0sqajdd7zssjfgil06ixfmnsijkx"; depends=[curl jsonlite]; };
   capushe = derive2 { name="capushe"; version="1.1.1"; sha256="1aa76ir1kp67hiz7dr60azyc71yzslshyc640fjh0fpw0sp5kwbc"; depends=[MASS]; };
   capwire = derive2 { name="capwire"; version="1.1.4"; sha256="18a3dnbgr55yjdk6pd7agmb48lsiqjpd7fm64dr1si6rpgpl4i9c"; depends=[]; };
-  car = derive2 { name="car"; version="3.0-0"; sha256="1ks2jaav8lbxhzw56vpbnysjk3pvpmqh6avd574k0bha1226k81h"; depends=[abind carData lme4 maptools MASS mgcv nlme nnet pbkrtest quantreg rio]; };
-  carData = derive2 { name="carData"; version="3.0-1"; sha256="193pdwgw6gk19v7swk1kwphg3vqdmpsgi555g9nyz93sa39j7r8j"; depends=[]; };
+  car = derive2 { name="car"; version="3.0-2"; sha256="0l3wyc9ia0ypcbap2p39slazfpbl84mjzydqvpsywrzdiyxajnfz"; depends=[abind carData lme4 maptools MASS mgcv nlme nnet pbkrtest quantreg rio]; };
+  carData = derive2 { name="carData"; version="3.0-2"; sha256="152lfgaspgx6x2wzdb5p3zv6r87a0d2pg10h6fjmdr613kzlwp1v"; depends=[]; };
   carSurv = derive2 { name="carSurv"; version="1.0.0"; sha256="0wv7lp10i4sdfqyizg77ghblp3pcp7wzhs946sm0wl6w00krav9j"; depends=[corpcor fdrtool mboost Rcpp survival]; };
+  carbonate = derive2 { name="carbonate"; version="0.1.0"; sha256="0p1l84vmcn1jiwnw6s9ysbbag2zxb2qiwx2kb4ghkxrhycid1p9n"; depends=[clipr httr magick R6 RSelenium rtweet wdman yaml]; };
   carcass = derive2 { name="carcass"; version="1.6"; sha256="0nhp35nxjqqmy15rf9vc0qyymy7d0v8mc84570b9nc62g5xac8xy"; depends=[arm expm lme4 MASS survival]; };
   cardidates = derive2 { name="cardidates"; version="0.4.8"; sha256="1mfd5sgzswhs9rln2bgxx8c54z69xp8l5dfmx7jfh8jl43qkzpjf"; depends=[boot lattice pastecs]; };
   cardioModel = derive2 { name="cardioModel"; version="1.4"; sha256="1a2nvn4a4zc89pb01m20pxqgbj0ypzzvx9w2vfzwly1kzkhvc9hr"; depends=[lubridate nlme]; };
@@ -4927,16 +5140,18 @@ in with self; {
   caribou = derive2 { name="caribou"; version="1.1"; sha256="0ibl3jhvsgjfcva0113z0di9n5n30bs90yz0scckfv1c0pjhn4xd"; depends=[]; };
   caroline = derive2 { name="caroline"; version="0.7.6"; sha256="1afxxbrd7w628l4pxdmvwbs7mbgxlhnfq3nxk2s93w47gn7r9fp7"; depends=[]; };
   carpenter = derive2 { name="carpenter"; version="0.2.1"; sha256="1f6g85qgd53wzha8kfq8x29lb5wilgxm6bj49znzd1qj03nlnpna"; depends=[dplyr lazyeval magrittr pander tidyr]; };
+  carrier = derive2 { name="carrier"; version="0.1.0"; sha256="0bqnwnnjqjk9q0lxq6kkz9s75ss10lfyyywyyi24m8wppxpw1vqc"; depends=[pryr rlang]; };
   cartogram = derive2 { name="cartogram"; version="0.1.0"; sha256="01ixcn6fy38r6nazch9dqlg19znssrx4d4fahvx9z7f4clnh0k80"; depends=[packcircles rgeos sf sp]; };
-  cartography = derive2 { name="cartography"; version="2.1.1"; sha256="0dd1qps1iw9cbipy1wamyb1f2ia9bcwdb1v7jaa58ac2x1y4m9gr"; depends=[classInt raster Rcpp rgeos rosm sf sp]; };
+  cartography = derive2 { name="cartography"; version="2.1.2"; sha256="0rh97byxrmnd8wkq190zjql41zkvhzmhjg1s0nscrwjassmp4sqp"; depends=[classInt raster Rcpp rgeos rosm sf sp]; };
+  cartools = derive2 { name="cartools"; version="0.1.0"; sha256="0gc5502373f0c2m2rh6awvyfqrg1wx1f341dm2byk9znba887lgs"; depends=[animation devtools dplyr gapminder ggplot2 knitr rlist rmarkdown roxygen2 sde shiny tidyverse usethis]; };
   carx = derive2 { name="carx"; version="0.7.1"; sha256="1qyqsj6pfzzqyaj6076zvgcimhl4cll6sxfb6aigm02rwfkq5gvh"; depends=[matrixStats mvtnorm nlme tmvtnorm xts zoo]; };
   caschrono = derive2 { name="caschrono"; version="2.0"; sha256="091zqin2cr9p50zmifrb52dxy10zflm7f0lr9nissy589qjdd0gk"; depends=[Hmisc zoo]; };
   caseMatch = derive2 { name="caseMatch"; version="1.0.7"; sha256="1xd7mlnknjrilxcp0w0b36aaiql6jdqgyin1823r2x8vl9r4aqns"; depends=[]; };
   casebase = derive2 { name="casebase"; version="0.1.0"; sha256="0216qzyxv44cl9f806lal9lx4n0zzr9csx8ggyjva04h5iiqrq6w"; depends=[data_table ggplot2 survival VGAM]; };
-  castor = derive2 { name="castor"; version="1.3.3"; sha256="0n7d4225g28c3i4w4n9bdd8zz91kr80vvnajpn5433db71bqrrv8"; depends=[naturalsort Rcpp]; };
+  castor = derive2 { name="castor"; version="1.3.4"; sha256="0ghbxh9n8189wzif5v941iax775yq0n7rkhw98wx3wklwn75ijv4"; depends=[naturalsort Rcpp]; };
   cat = derive2 { name="cat"; version="0.0-6.5"; sha256="1gv7chqp6kccipkrxjwhsa7yizizsmk4pj8672rgjmpfcc64pqfm"; depends=[]; };
   catIrt = derive2 { name="catIrt"; version="0.5-0"; sha256="09010z1q96nbnpys6mybspaqy57lvgd2cvwgnfijzgx3kl87pwnl"; depends=[numDeriv]; };
-  catR = derive2 { name="catR"; version="3.15"; sha256="1c258x8s1j4z0p1kdg7kr4ligir8q2xdcxmk2cqshxfi0p0irajz"; depends=[]; };
+  catR = derive2 { name="catR"; version="3.16"; sha256="1w39dxfzqk065v64qzmfamx8p1njsv13a461s6clagbqmhysmzbx"; depends=[]; };
   catSurv = derive2 { name="catSurv"; version="1.0.3"; sha256="1qjmjdmc81inim5kpwh4k2r3cffmkyp2wpcqqzv731hciqrad8a8"; depends=[BH ltm Rcpp RcppArmadillo RcppGSL RcppParallel]; };
   catch = derive2 { name="catch"; version="1.0"; sha256="16gdjrmlsnpyc38fihggj6c7wpgpmf4phcwrimnncdhwlk038yn8"; depends=[MASS Matrix tensr]; };
   catcont = derive2 { name="catcont"; version="0.5.0"; sha256="0ix6ipm3nn9aq5vxirjga2kwwfnxn4v8ggfjlg5v9027v2r8rb96"; depends=[dplyr]; };
@@ -4945,7 +5160,7 @@ in with self; {
   cate = derive2 { name="cate"; version="1.0.4"; sha256="0qck6675xm5xbw440m1b6n38wjwk7izx3s0zpxbmhc9wh12c5prk"; depends=[corpcor esaBcv leapp MASS ruv sva]; };
   catenary = derive2 { name="catenary"; version="1.1.2"; sha256="1n64kq3lkaf00a2mghs67hnxvi4dp6g12pwifyx0bd418wkw9wf3"; depends=[boot broom dplyr ggplot2 tidyverse]; };
   cati = derive2 { name="cati"; version="0.99.2"; sha256="1h8x73sfjdz45zpcrv80nq8l9i1gldw0vmdgn2lhqrjaxz4zn01l"; depends=[ade4 ape e1071 FD geometry hypervolume nlme rasterVis vegan]; };
-  catlearn = derive2 { name="catlearn"; version="0.5"; sha256="12sl1jlnn8669via3fbslbqs3f34andwsizkllpiw0b6k9z2yid6"; depends=[doParallel foreach Rcpp]; };
+  catlearn = derive2 { name="catlearn"; version="0.6"; sha256="1dh6svlnvxq1a8sv72wdwsgzd72kgaqgjbbbm3nw5qpycy5lqr8x"; depends=[doParallel dplyr foreach Rcpp tidyr]; };
   catmap = derive2 { name="catmap"; version="1.6.4"; sha256="18449qh10jxfi8p49gmbnib5y013nfdgdblbs4n0mfs0nnzb10sx"; depends=[forestplot metafor]; };
   catnet = derive2 { name="catnet"; version="1.15.3"; sha256="1dgqrn1lz57pwb5pca0mlvcmw9piy9xgf6fs0y2lsy4qxa9k0plk"; depends=[]; };
   catspec = derive2 { name="catspec"; version="0.97"; sha256="1crry0vg2ijahkq9msbkqknljx6vnx2m88bmy34p9vb170g9dbs1"; depends=[]; };
@@ -4954,7 +5169,7 @@ in with self; {
   causaldrf = derive2 { name="causaldrf"; version="0.3"; sha256="16gqx8b8alwm8a4lm69qamnqr3bg2qbz0d6q4lyqyrwsk12grid6"; depends=[mgcv survey]; };
   causaleffect = derive2 { name="causaleffect"; version="1.3.8"; sha256="1z7dnfq469wa263xcxfixrn5q4vcd6xl62lahnc5gc8wzvxnxz8g"; depends=[ggm igraph XML]; };
   causalsens = derive2 { name="causalsens"; version="0.1.2"; sha256="1xy8nybflbw6hymc15mmz27ic6hcq89wryb8q6d4zi216lwv2nww"; depends=[]; };
-  causalweight = derive2 { name="causalweight"; version="0.1.0"; sha256="1hig92w18vsyfpv1kvgymk37ik7rw7ql80p886b3s6vwdz8z0r3j"; depends=[mvtnorm np]; };
+  causalweight = derive2 { name="causalweight"; version="0.1.1"; sha256="0np9dzl5nq4rkxy8br1pvgkl5sxmihwgjxn0b1gn5cisiv6q2106"; depends=[mvtnorm np]; };
   cba = derive2 { name="cba"; version="0.2-19"; sha256="0nyssc7j5rkv1gcgx4cg31hwc37wd5k3yn9s2k22ffxlnrknss2l"; depends=[proxy]; };
   cbanalysis = derive2 { name="cbanalysis"; version="0.2.0"; sha256="0h0h8krlb6rckjpcw0jbbr8pcy3jm0cszimbm56l0ca668kiix06"; depends=[]; };
   cbar = derive2 { name="cbar"; version="0.1.3"; sha256="1jy52qnpjvszdd8xviv3vr00ds6bah73q0mhd4kixf68jafnxd35"; depends=[Boom bsts dplyr ggplot2 magrittr]; };
@@ -4970,13 +5185,13 @@ in with self; {
   cccrm = derive2 { name="cccrm"; version="1.2.1"; sha256="180hzxm4z91hh008lysq1f0zky7qngg5z1laa1c119g4rqqcdskl"; depends=[gdata nlme]; };
   ccda = derive2 { name="ccda"; version="1.1"; sha256="0ya9x1b41l0pjyyfdswjyip0c2v8z7gncbj7cdz0486ad75229x7"; depends=[MASS]; };
   ccdrAlgorithm = derive2 { name="ccdrAlgorithm"; version="0.0.5"; sha256="171k70p4qyasr385ma3cvcga2b4nbz2dfry78wqx5yb1aa6wwcyc"; depends=[Rcpp sparsebnUtils]; };
-  ccfa = derive2 { name="ccfa"; version="1.0.0"; sha256="0hhrcckiig1qfj7qb04jdmm7bwk9a17y6fn7ldxbmmw8546ad7md"; depends=[BMisc formula_tools ggplot2 pbapply quantreg TempleMetrics tidyr]; };
+  ccfa = derive2 { name="ccfa"; version="1.1.0"; sha256="1paxk1jkkl8yy71h8zqw7kmhy5yz93sp7z9mpnckwyxmsbs58ps8"; depends=[BMisc doParallel foreach formula_tools ggplot2 pbapply quantreg TempleMetrics tidyr]; };
   ccgarch = derive2 { name="ccgarch"; version="0.2.3"; sha256="0angffla3sk9i86v6bbsav95fp3mz5yvq7qfv0fx2v0nd2cx116w"; depends=[]; };
   cchs = derive2 { name="cchs"; version="0.4.0"; sha256="1dahiyn3rj65w56hmhqdxvxh7vkjy5rxlkp1l59aq5iba21ldsyj"; depends=[survival]; };
   cclust = derive2 { name="cclust"; version="0.6-21"; sha256="1n5hh0017bcq8ck52qq89jm9zgdfpmiksrypsnv2vvhk3nr0s91c"; depends=[]; };
   ccmm = derive2 { name="ccmm"; version="1.0"; sha256="0855nr74xxpy7in2vrw15g8pv7nm1374irc1c5hikr5hadk5pf8v"; depends=[MASS]; };
   cctools = derive2 { name="cctools"; version="0.1.1"; sha256="1baqijxg75wr90y38d5g1gg8jmpz8ji7zv51wp9n1knif27rg348"; depends=[qrng Rcpp RcppArmadillo]; };
-  cdata = derive2 { name="cdata"; version="0.7.1"; sha256="0hijmhpcz5r4sg8r4fn5h5lzklfwyzjh3dr25bwjc82jdcysjplg"; depends=[wrapr]; };
+  cdata = derive2 { name="cdata"; version="1.0.3"; sha256="0vakyz0asb0fw86lfd1vcc5px45s1xa9f10san0kvlv1qs7agmdz"; depends=[rquery wrapr]; };
   cdb = derive2 { name="cdb"; version="0.0.1"; sha256="1rdb4lacjcw67apdyiv7cl1xvv9d1mrzck1qk605n6794k7wf2ys"; depends=[bitops]; };
   cdcfluview = derive2 { name="cdcfluview"; version="0.7.0"; sha256="00yc3q28y20l2ppqxy6h53p9fvwhvpkc8m7csmp2lizqh787i2cc"; depends=[dplyr httr jsonlite MMWRweek purrr readr sf units xml2]; };
   cdcsis = derive2 { name="cdcsis"; version="1.0"; sha256="1fxdsaqpjhpffn2fxddfcrx8wxwyvfws6rxkpp57g25980xiyzkd"; depends=[ks]; };
@@ -5000,7 +5215,7 @@ in with self; {
   censorcopula = derive2 { name="censorcopula"; version="2.0"; sha256="16pk4xlpliif02qznrhvl8qmrr6k4kknygqxcm83nsjxy6dcyga8"; depends=[copula]; };
   census = derive2 { name="census"; version="0.2.0"; sha256="02qlmifppnfxw7bzh0zngih8z8qz0sxpsi38h7bv324vxx94gvz2"; depends=[ggmap RCurl]; };
   censusGeography = derive2 { name="censusGeography"; version="0.1.0"; sha256="1ncgd05ml571g3vy1g4p5xxg2bm08hbb6d5r3hpz7frn7w3l8l1d"; depends=[qdapTools]; };
-  censusapi = derive2 { name="censusapi"; version="0.3.0"; sha256="1i3z54ikg6nlxdq3hrb0a58v92lri096jxmkqqdg70rv089wspmf"; depends=[httr jsonlite]; };
+  censusapi = derive2 { name="censusapi"; version="0.4.1"; sha256="0lyy5n1zv22l0lwbkllvx0g6i2vzm7srgynmxhyis4d62cygfbdq"; depends=[httr jsonlite]; };
   censusr = derive2 { name="censusr"; version="0.0.4"; sha256="1n9571fyr46wj1dcxc2xgns9865655yzlq7yfz8im014wh0ycwqc"; depends=[dplyr httr stringr]; };
   censys = derive2 { name="censys"; version="0.1.0"; sha256="0r0yvaidn0qn96hx461415hywsjfgaz9wvvdssx7w97v2ndnk9sy"; depends=[httr jsonlite purrr stringi]; };
   centiserve = derive2 { name="centiserve"; version="1.0.0"; sha256="1m6gqz2rk7023340laa5pc0ncbfka2qi9ajvh65fwijd7xvv3n5c"; depends=[igraph Matrix]; };
@@ -5010,10 +5225,10 @@ in with self; {
   cepp = derive2 { name="cepp"; version="1.7"; sha256="01hvm6586xnb1crvk7brqh3dm2j44ia5lrl5swnf6pb682yskbq0"; depends=[randtoolbox trust]; };
   cepreader = derive2 { name="cepreader"; version="1.1-2"; sha256="0pyycacsnbqz7hyrvrwwmmphrhny0byyxv66fwrvcsk3s88a7crf"; depends=[]; };
   cernn = derive2 { name="cernn"; version="0.1"; sha256="0gz2x20pgsiq85hwkkpg4s1cdlw9plygx0446djc7qsymp469p2w"; depends=[]; };
-  cetcolor = derive2 { name="cetcolor"; version="0.1.0"; sha256="013ghlfs27a585851cir5fxgxhi41h48irq90932y55npa8gwdak"; depends=[]; };
-  ceterisParibus = derive2 { name="ceterisParibus"; version="0.2.1"; sha256="0qjdp4mi1s5j6rzp1z858qv8pxsbh9imykpnh6lmg7diawqpll8h"; depends=[DALEX ggplot2 gower knitr]; };
+  cetcolor = derive2 { name="cetcolor"; version="0.2.0"; sha256="0kygdcr9ldanr0z4qpygwh0padki7s2ad0j6myky601g4228z79q"; depends=[]; };
+  ceterisParibus = derive2 { name="ceterisParibus"; version="0.3.0"; sha256="1ajc5irn9b0ww58vp09pi5bkgx5qdfs5nih9zyayb3nka3jnrkpz"; depends=[DALEX ggplot2 gower knitr]; };
   cfa = derive2 { name="cfa"; version="0.10-0"; sha256="12z58y4ls9m58wpj1xa4ir2p2apzxaskps05sxy2946m24i71zfk"; depends=[]; };
-  cffdrs = derive2 { name="cffdrs"; version="1.7.6"; sha256="00n3h2vf855anxh0xgsps7sv0kj819864wjdmkiak1lsacysav8s"; depends=[data_table doParallel foreach raster rgdal spatial_tools]; };
+  cffdrs = derive2 { name="cffdrs"; version="1.8.1"; sha256="1l3iihqp5yqr7215ahpb80mdd0qr68xfbhskh7ypl9aq6aw4flzd"; depends=[data_table doParallel foreach geosphere raster rgdal spatial_tools]; };
   cfma = derive2 { name="cfma"; version="1.0"; sha256="006z5g3rqpg44jqdf6ivyxr47sxm5cd9cqhayfi8qk73xx5w4lv9"; depends=[]; };
   cg = derive2 { name="cg"; version="1.0-3"; sha256="1kbyal1sicbr10yvxpwgcij710kqpi23vmndp9kyfzn3k8zfird3"; depends=[Hmisc lattice MASS multcomp nlme rms survival VGAM]; };
   cgAUC = derive2 { name="cgAUC"; version="1.2.1"; sha256="172f9rkfhv4xzwpw8izsnsdbcw9p3hvxhh0fd8hzlkil7vskr3k8"; depends=[Rcpp]; };
@@ -5021,66 +5236,72 @@ in with self; {
   cgdsr = derive2 { name="cgdsr"; version="1.2.10"; sha256="1xyhw7mhmjichr1l6f9y1qvfj9wm87kfbm87ji7lcwf36gxh5g23"; depends=[R_methodsS3 R_oo]; };
   cgh = derive2 { name="cgh"; version="1.0-7.1"; sha256="1fgjz43bgnswlyvrm669x697lybq3jyzz4l8ppgxqwxp4p4d2yqn"; depends=[]; };
   cghRA = derive2 { name="cghRA"; version="1.6.0"; sha256="16dlw27s8wckc75xcwc2g74pw6bar0y0ii3h53w1hql05d4f7sb8"; depends=[DNAcopy Rgb]; };
-  cgmanalysis = derive2 { name="cgmanalysis"; version="1.3"; sha256="0fb93czybl9rpndvz3lykfiwksa154vdrmils8c8l688c62gyq55"; depends=[gdata pracma zoo]; };
-  chandwich = derive2 { name="chandwich"; version="1.0.0"; sha256="05x9mg33yl4d9kh5sc4lqi00hwnxdhfg2m0dkm5q0jynkhap7bmz"; depends=[numDeriv]; };
+  cglasso = derive2 { name="cglasso"; version="1.1.0"; sha256="0qr6y06aablncj4ja4xjp4dhykqy15qmbigi4px9snpwssrqhwl2"; depends=[igraph MASS]; };
+  cgmanalysis = derive2 { name="cgmanalysis"; version="2.0"; sha256="0j8nl0r69hm5niq7bhjc4rh9sjy5x6pd2dxrsqifj9zv7kz4w4yq"; depends=[gdata ggplot2 lubridate pastecs pracma readr zoo]; };
+  cgraph = derive2 { name="cgraph"; version="2.0.3"; sha256="1ag7ajva1af08bgn99ib8ryqwdwcw6nfy4yzfpr19831jgq1hsg9"; depends=[R6]; };
+  chandwich = derive2 { name="chandwich"; version="1.1.0"; sha256="0m3fw416kf41sb21xdf1qkj7cj24xagzf31g4mryzwags2xlbzyv"; depends=[numDeriv]; };
   changepoint = derive2 { name="changepoint"; version="2.2.2"; sha256="1jbki95pck10phpxna0b4i79hhl912zqi5ii9mjqb673y64dszkj"; depends=[zoo]; };
   changepoint_np = derive2 { name="changepoint.np"; version="0.0.2"; sha256="03i4l59h8cr6bizbqn288x9r85kvaz1dyhkv5fsj1189qpdi9m88"; depends=[changepoint zoo]; };
   changepointsHD = derive2 { name="changepointsHD"; version="0.3.0"; sha256="05zmypz2jz55m9avzg63dmp7fpcgi7jpc9vf2fv0kywcvf2wz5ym"; depends=[Rcpp RcppArmadillo]; };
   changepointsVar = derive2 { name="changepointsVar"; version="0.1.0"; sha256="0kj9m9jik1dm5fx4c4hb559f5irpl1mvxk4wwajd5577a2fdqxb5"; depends=[lars MASS]; };
-  charlatan = derive2 { name="charlatan"; version="0.2.0"; sha256="1j8lrkh2s7d3jpc07k3rranf8l5rsp1sp9y42fi1rhfkakwssfqd"; depends=[R6 tibble whisker]; };
+  changer = derive2 { name="changer"; version="0.0.3"; sha256="1pmnspadkshz7z9f275vks1xjh6a9k37h7j51dqdjrqilzq7y6sf"; depends=[available devtools git2r]; };
+  charlatan = derive2 { name="charlatan"; version="0.3.0"; sha256="1i8n6kmdv8f2mnd626qja979qx35fdl1a8r9akgqznh5bhjqiq42"; depends=[R6 tibble whisker]; };
   cheb = derive2 { name="cheb"; version="0.3"; sha256="0vqkdx7i40w493vr7xywjypr398rjzdk5g410m1yi95cy1nk4mc7"; depends=[]; };
-  chebpol = derive2 { name="chebpol"; version="1.5"; sha256="1fsxvay91yqbhxcxchd6pf9x8jpjm9qp2rvc79wq5l5g4ng617pj"; depends=[]; };
+  chebpol = derive2 { name="chebpol"; version="2.0"; sha256="0iz7iz7b1mc67gkgklh8zmnhacgq1cgdfy0w2wd54g0jz934d77p"; depends=[geometry]; };
+  checkLuhn = derive2 { name="checkLuhn"; version="1.1.0"; sha256="1s1ix5n98bcbzcvrz5h19sk9pchdvrhpy3ppmw96ys8vylzm58mv"; depends=[dplyr stringr]; };
   checkarg = derive2 { name="checkarg"; version="0.1.0"; sha256="0rkdjs2c4yx9laqgayxz57bwxhwgdh6ndrr4i3b1kh31lcmk1xc6"; depends=[]; };
   checkmate = derive2 { name="checkmate"; version="1.8.5"; sha256="1q6igk50lq4fp5d3imgcn1j063h3gsp214ra4nlf534hf4wjlkg9"; depends=[backports]; };
-  checkpoint = derive2 { name="checkpoint"; version="0.4.3"; sha256="0r7v7ijyq92yd95ssxxbdlp5dv1sd09yvxr8c0yihf48kzw65s63"; depends=[]; };
+  checkpoint = derive2 { name="checkpoint"; version="0.4.5"; sha256="0ml6lr8vmnrj2d073mr6dxsy0sqf50vyc956j9pnmzan2k7qv2wc"; depends=[]; };
   checkr = derive2 { name="checkr"; version="0.3.0"; sha256="168grrzl17k43fdrh9ps4hvhiyinldlmdq8bwdpj5b5cvvhh22lp"; depends=[]; };
   cheddar = derive2 { name="cheddar"; version="0.1-633"; sha256="09mw8rr5xb06gw3hbk7zv2nnx6mwhs6i19ffbp9pv3yv2945cjlf"; depends=[]; };
-  chemCal = derive2 { name="chemCal"; version="0.1-37"; sha256="1sbmr8arczc65nzbgr5rfk2mbbnk6h60ni9cd9jngbhgdf0g1scw"; depends=[]; };
+  chemCal = derive2 { name="chemCal"; version="0.2.1"; sha256="1kq82x57qm68im6lyqjqmh4p34s4y7fn5v6ymclxjr47mdv8npb5"; depends=[]; };
   chemmodlab = derive2 { name="chemmodlab"; version="1.0.0"; sha256="0lzibshhfz52m61xldf0xq4cc1xx64fjlw18hlkiv65dj3gcj2mh"; depends=[caret class e1071 elasticnet foreach lars MASS nnet pls pROC randomForest rpart tree]; };
   chemometrics = derive2 { name="chemometrics"; version="1.4.2"; sha256="0shqns0n964pfwnd0q5sadglrlpgs4g5fbv45fsj9p37l4pq61dp"; depends=[class e1071 lars MASS mclust nnet pcaPP pls robustbase rpart som]; };
   cherry = derive2 { name="cherry"; version="0.6-12"; sha256="1b74wlvjqxa532gxs400m1k4qs7xwpdap9ms60nlcwr7x1857mk6"; depends=[bitops lpSolve Matrix]; };
   chi = derive2 { name="chi"; version="0.1"; sha256="1y91mwahj4j2wz0y5k5vdpq7ygq834h8jkn37n74lqnwvv1968rr"; depends=[]; };
   chi2x3way = derive2 { name="chi2x3way"; version="1.1"; sha256="13qc8sigiw4gcxk8y50q7yfgzbssjyl41fizzjqzcp3p14kpsmzw"; depends=[]; };
+  chicane = derive2 { name="chicane"; version="0.1.0"; sha256="1f7sxqwg9s8l3lz538kyq8x5csqyq8g67vpm4zh9c962kg5m3f55"; depends=[data_table doParallel foreach gamlss gamlss_tr MASS]; };
   childesr = derive2 { name="childesr"; version="0.1.0"; sha256="14jca7lxyn0fip794l70mznhz4ld6iix995wrmiqynxdms6j80np"; depends=[DBI dbplyr dplyr jsonlite magrittr purrr RMySQL]; };
   childhoodmortality = derive2 { name="childhoodmortality"; version="0.3.0"; sha256="1ixd10jyzgr1ssnjas35kngpsqyjzl73wwpvcspv06cn12sv2b8d"; depends=[dplyr matrixStats plyr]; };
   childsds = derive2 { name="childsds"; version="0.6.7"; sha256="1m5w0wbdk032b6d6h1704wji84yckyl427bja0mb4vqp28m99z48"; depends=[boot class dplyr gamlss gamlss_dist magrittr purrr reshape2 tibble tidyr]; };
   chillR = derive2 { name="chillR"; version="0.70.6"; sha256="0vkw9r2k8xdshwb3v90bp93mgbp3vj04c7hjxcmaxpsqkhxwda04"; depends=[fields httr jsonlite Kendall pls R_utils raster RCurl readxl RMAWGEN sp XML]; };
   chinese_misc = derive2 { name="chinese.misc"; version="0.1.9"; sha256="1rs16a5rqp0yq1c5j4yl6yji7hf9x76v6x7qmxppshjii5r8055h"; depends=[jiebaR Matrix NLP purrr Ruchardet slam stringi tm]; };
   chipPCR = derive2 { name="chipPCR"; version="0.0.8-10"; sha256="1mff7n7ga4sfwvcq7zkjkrl68nybnm2zkn37hmxvnw9yl3ls9lnw"; depends=[lmtest MASS outliers ptw quantreg Rfit robustbase shiny signal]; };
-  chngpt = derive2 { name="chngpt"; version="2018.6-2"; sha256="043aw52kimif7wbz87hf7bg0vmd9n73pj87lvqp0ms99jmp7q2w0"; depends=[boot kyotil MASS survival]; };
+  chngpt = derive2 { name="chngpt"; version="2018.7-25"; sha256="0c9vxlhrcyrbrp8cj0xvm2z4hy1m2rs538i4kzhrw8xlfiwb8ydd"; depends=[boot kyotil MASS survival]; };
   choiceDes = derive2 { name="choiceDes"; version="0.9-3"; sha256="1nsc8p4svfc6z7ckffl24c0acnaxi6cnpz7jq03vzn6spxvpjcmw"; depends=[AlgDesign]; };
-  cholera = derive2 { name="cholera"; version="0.4.0"; sha256="0pm5kbaqkxkwzyda4ms90yivx0iv7hcn2z65xfqcqlsxsjbvlmhs"; depends=[deldir HistData igraph KernSmooth pracma RColorBrewer scales sp]; };
+  cholera = derive2 { name="cholera"; version="0.5.1"; sha256="0v59pzsi8wg1b7f18zkhxmqldvpan296sw079a58krgcfinjm4ss"; depends=[deldir HistData igraph KernSmooth pracma RColorBrewer scales sp]; };
   choplump = derive2 { name="choplump"; version="1.0-0.4"; sha256="0fn6m3n81jb7wjdji4v04m53gakjfsj3ksm546xxz5zm7prk237s"; depends=[]; };
   chopthin = derive2 { name="chopthin"; version="0.2.2"; sha256="1ixmgq6igd2ji88qba7scny1j8rrizcf76dk4ymk3hah5dln97fz"; depends=[Rcpp]; };
   chords = derive2 { name="chords"; version="0.95.4"; sha256="1v6zvl1mv9fyf6hx1fpbj3i7s893n4y1w4j9rw1arps006qz2jqn"; depends=[MASS Matrix]; };
-  choroplethr = derive2 { name="choroplethr"; version="3.6.2"; sha256="0am163df7ggvvk8bk9hjq6f2jc55zzq24skpsgrx1qdlpgv7mls5"; depends=[acs dplyr ggmap ggplot2 gridExtra Hmisc R6 RgoogleMaps scales stringr tigris WDI]; };
+  choroplethr = derive2 { name="choroplethr"; version="3.6.3"; sha256="0m6kyrgnv5s1q2ncc63rfxcwqdqx5adqk14q57ss4r84i14dm5yb"; depends=[acs dplyr ggmap ggplot2 gridExtra Hmisc R6 RgoogleMaps stringr tigris WDI]; };
   choroplethrAdmin1 = derive2 { name="choroplethrAdmin1"; version="1.1.1"; sha256="13ljs21hdhiv6n4napmk1gjnjhpll6j5wyijzv4xnnbi1y3ns7a9"; depends=[ggplot2]; };
   choroplethrMaps = derive2 { name="choroplethrMaps"; version="1.0.1"; sha256="0ghqb2d1h0qkbcsll6ck2qk5sfvdwsrlh3phlbsjbak30832j7fr"; depends=[]; };
-  chorrrds = derive2 { name="chorrrds"; version="0.1.4"; sha256="1mfvzj3bwipdhcdhsp66ihchnnvdbcb9zww2a19ldwr6bwx7nfic"; depends=[dplyr httr jsonlite magrittr plyr stringr XML]; };
+  chorrrds = derive2 { name="chorrrds"; version="0.1.7"; sha256="0dxy57w91cjfya5v4sgmih0snzqbbqh9ljyk9gb59z83dm6cj9fg"; depends=[dplyr magrittr plyr purrr stringr XML]; };
   chromer = derive2 { name="chromer"; version="0.1"; sha256="0fzl2ahvzyylrh4247w9yjmwib42q96iyhdlldchj97sld66c817"; depends=[data_table dplyr httr]; };
   chromoMap = derive2 { name="chromoMap"; version="0.1"; sha256="10cj9liggnbnr4isqmm8jp700z3qj4zq0dm7f7jyj7f0lg8my80y"; depends=[htmltools htmlwidgets]; };
   chromoR = derive2 { name="chromoR"; version="1.0"; sha256="1x11byr6i89sdk405h6jd2rbvgwrcvqvb112bndv2rh9jnrvcw4z"; depends=[gdata haarfisz]; };
-  chron = derive2 { name="chron"; version="2.3-52"; sha256="185lfp75cv3l4cavg64sccj8lgc5sivch13n6gkannv3pd5cyzy4"; depends=[]; };
+  chron = derive2 { name="chron"; version="2.3-53"; sha256="02bkywwsxwrxc035hv51dxgdm1fjxdm7dn19ivifln59dfs1862j"; depends=[]; };
   chunkR = derive2 { name="chunkR"; version="1.1.1"; sha256="1kw3hsx5k4cdicx0hc1v0mf2nzvqg95shx2xv05vb2pass48qw48"; depends=[Rcpp]; };
   chunked = derive2 { name="chunked"; version="0.4"; sha256="0pqk6nnxxnlsw9zal62ajjalrlmvkdrzyz2l8r10jd7s61vhra40"; depends=[DBI dplyr LaF lazyeval]; };
-  ciTools = derive2 { name="ciTools"; version="0.3.0"; sha256="0mqrnln7iz6jm30nh1qb2457icaz3hcqmgqbj8m61z0sf6jj9pd7"; depends=[arm boot dplyr lme4 magrittr MASS tibble]; };
+  ciTools = derive2 { name="ciTools"; version="0.5.0"; sha256="0gzzzy2siwlhvwfv2hrasz4m9p8qir8w11bhc3hwkcidb4z8ydqs"; depends=[arm boot dplyr lme4 magrittr MASS survival tibble]; };
   cifti = derive2 { name="cifti"; version="0.4.5"; sha256="092334lcpkzv52bg53hzx64dnrwq67f3p9fzwchmafx1l46xrqx9"; depends=[gifti oro_nifti R_utils xml2]; };
   cin = derive2 { name="cin"; version="0.1"; sha256="1pwvy5nh5nrnysfqrzllb9fcrpddqg02c7iw3w9fij2h8s2v6kq5"; depends=[]; };
   cir = derive2 { name="cir"; version="2.0.0"; sha256="0ycjnbikpyhcfdik7c5knw4s9gl8y5h4219c4fhs4axs04np004v"; depends=[]; };
   circglmbayes = derive2 { name="circglmbayes"; version="1.2.3"; sha256="1a60d8jpvwx2qwmy2if60c5vni9hp73fdwgz7mwi5xd5l67zwd3h"; depends=[BH coda ggplot2 Rcpp RcppArmadillo reshape2 shiny]; };
   circlize = derive2 { name="circlize"; version="0.4.4"; sha256="1l28maiqi549z191srncxgabx5fnvf0lld7smzwfd3vr5cx8nqww"; depends=[colorspace GlobalOptions shape]; };
   circular = derive2 { name="circular"; version="0.4-93"; sha256="0hki85rs8wc5950pjaw28q54rly2napfbcrx3pchlfap6wwy5kkn"; depends=[boot mvtnorm]; };
+  circumplex = derive2 { name="circumplex"; version="0.2.0"; sha256="1i86b4bqv9s8as5r0y4ldiwikvpx3srn6fy8gd9g098m4khc7kl9"; depends=[assertthat boot dplyr ggforce ggplot2 glue htmlTable magrittr MASS purrr Rcpp RcppArmadillo rlang tibble tidyr]; };
   cit = derive2 { name="cit"; version="2.2"; sha256="1lf8r3r4zwvs08vl4byhw6rvf54nb7vg83558pi0b5866m7in4sc"; depends=[]; };
   citbcmst = derive2 { name="citbcmst"; version="1.0.4"; sha256="1zkd117h9nahwbg5z6byw2grg5n3l0kyvv2ifrkww7ar30a2yikl"; depends=[]; };
   citccmst = derive2 { name="citccmst"; version="1.0.2"; sha256="1b7awn1hjckxisfdi4ck697hwd4a5sqklwi7xzh6kgqhk9pv7vjn"; depends=[]; };
   citr = derive2 { name="citr"; version="0.2.0"; sha256="1nzn0yw74k6zkwzb6spfzqkj3cbx6ry6ypbsnhy6w2flabnnvy4v"; depends=[assertthat curl miniUI RefManageR rstudioapi shiny yaml]; };
   ciuupi = derive2 { name="ciuupi"; version="1.0.0"; sha256="1c72crf0his7vzmh86isvcvi0ahxnqdq4i6ms84hk20jmlz2hxin"; depends=[functional nloptr pracma statmod]; };
-  civis = derive2 { name="civis"; version="1.5.0"; sha256="1cxafcnmbr97i1ygfrwn0d91hyr8irxp1g9zc9zmmaqb3kw5s0sx"; depends=[DBI dbplyr devtools dplyr feather future ggplot2 httr jsonlite lubridate memoise purrr roxygen2 stringr testthat]; };
-  cjoint = derive2 { name="cjoint"; version="2.0.6"; sha256="1bhzw751ll43qbyif589yxmi3m1pbm206lqnsc5zcxsnxjf4li5n"; depends=[ggplot2 lmtest Matrix sandwich survey]; };
+  civis = derive2 { name="civis"; version="1.5.1"; sha256="13zc0p63i2iqnc27xcnkvhfz0bxyv4grqg4qi8ah7a1n7d2jq2ks"; depends=[DBI dbplyr devtools dplyr feather future ggplot2 httr jsonlite lubridate memoise purrr roxygen2 stringr testthat]; };
+  cjoint = derive2 { name="cjoint"; version="2.1.0"; sha256="1bs380ji9vsc1d77wqhl0ij9xblww3g9x3hiwpcpz26wihqcx7ac"; depends=[DT ggplot2 lmtest Matrix sandwich shiny shinyBS shinyjs survey]; };
   ck37r = derive2 { name="ck37r"; version="1.0.0"; sha256="0nn2sfsfs8mhgjrz0ghn041ybhj2qim4rs3lkci7s4n95c8hbgdi"; depends=[caret cvAUC doParallel doSNOW foreach ggplot2 pryr randomForest RANN reader RhpcBLASctl ROCR snow stringr SuperLearner tmle]; };
   ckanr = derive2 { name="ckanr"; version="0.1.0"; sha256="1cvn0cih763f0ppl1y90vnwj3cgqyb7az89sn12nyn2qb6igiqyl"; depends=[httr jsonlite magrittr]; };
   clValid = derive2 { name="clValid"; version="0.6-6"; sha256="1l9q7684vv75jnbymaa10md13qri2wjjg7chr1z1m0rai8iq3xxw"; depends=[class cluster]; };
-  cladoRcpp = derive2 { name="cladoRcpp"; version="0.14.4"; sha256="0d4vl7xrrwbhhx56ymw52rb5svw9nskxdya4dl04lw1qxc45p4jy"; depends=[Rcpp RcppArmadillo]; };
+  cladoRcpp = derive2 { name="cladoRcpp"; version="0.15"; sha256="0glx3gn2pvisrhplwd89j6l0qs3cfy4qigmncl4n631ic93y3dz4"; depends=[Rcpp RcppArmadillo]; };
   clam = derive2 { name="clam"; version="2.3.1"; sha256="1n30fvx4macyawhzv17bzvc1s4qdn51p9mx28apfjbf80qck24g9"; depends=[]; };
   clampSeg = derive2 { name="clampSeg"; version="1.0-4"; sha256="0clmv53wz7shawg6mp4q3qp0z0gmd8jmd6flgzn2q1m8j2i62vq0"; depends=[Rcpp stepR]; };
   clarifai = derive2 { name="clarifai"; version="0.4.2"; sha256="0igi4xl27nz0r85hpws2zfc2gn5z2nmywp3saxgp74mh2y99lg6s"; depends=[curl jsonlite]; };
@@ -5092,23 +5313,25 @@ in with self; {
   classifly = derive2 { name="classifly"; version="0.4"; sha256="0mw1vcas0gr1r4yvh0j02zhk7kp5342r0bhhg776hqgqdczgh5zj"; depends=[class plyr]; };
   classify = derive2 { name="classify"; version="1.3"; sha256="0134h12h6v06d7ldj9qgqjhh5f5ap98pvr0v6d4k8dqndnn0pggy"; depends=[ggplot2 lattice plyr R2jags Rcpp reshape2]; };
   classyfire = derive2 { name="classyfire"; version="0.1-2"; sha256="0rar3mi2m1wf14lmahjbpdh1jlnisvgsbx86xbqlb8c0f8zfzxq3"; depends=[boot e1071 ggplot2 neldermead optimbase snowfall]; };
+  classyfireR = derive2 { name="classyfireR"; version="0.1.1"; sha256="0r48xxiqhdgq1mx08ijhr21zj6gihadxajm7w7106xkpkz5diilj"; depends=[clisymbols crayon httr jsonlite magrittr tibble]; };
   cld2 = derive2 { name="cld2"; version="1.2"; sha256="03ffg1nxdlmg66sgg0w2jdx2s5jzdp8qhja24z0il2qy3qsa915k"; depends=[Rcpp]; };
   cld3 = derive2 { name="cld3"; version="1.1"; sha256="00jbncap8h0s26iw5i0891rag5gpf1n3s9imn6n0zbwdn1791ayr"; depends=[Rcpp]; };
   cleanEHR = derive2 { name="cleanEHR"; version="1.0"; sha256="0i8q7y4izc7q1pshdajy0n9wyihj4wlzzkd52ykam3dxqnwlnyh4"; depends=[data_table ggplot2 knitr pander Rcpp XML yaml]; };
   cleanNLP = derive2 { name="cleanNLP"; version="2.0.3"; sha256="0hmivb2yhj47alxc9z1hlk23hfan9vz938m6xyp639xf58l97scz"; depends=[dplyr Matrix stringi]; };
+  cleandata = derive2 { name="cleandata"; version="0.2.0"; sha256="0mwn016czp1qpc8g5h3l6njcbdbzhm5fm89d6x0jqyxm4v6rgxnr"; depends=[]; };
   cleangeo = derive2 { name="cleangeo"; version="0.2-2"; sha256="1bhpn53v36652mwg2ba2a6cs34slb7i0df2ibssyr2lnx5gciq4i"; depends=[maptools rgeos sp]; };
   cleanr = derive2 { name="cleanr"; version="1.1.3"; sha256="0vf2c2inb729kzmpxaznqa2zwj80j1ix9198gc36zq41ag5pd7jk"; depends=[checkmate]; };
   clere = derive2 { name="clere"; version="1.1.4"; sha256="1nk3chcnaa4y1c5rr6c3bapvi106ikbk9grqcq6s6j0imny1jp4a"; depends=[lasso2 Rcpp RcppEigen]; };
   clespr = derive2 { name="clespr"; version="1.1.2"; sha256="1993kd70w48a110im47vcpll0c6nfrm7m33r6l8rzgwnpsmcls8g"; depends=[AER clordr doParallel foreach magic MASS pbivnorm survival]; };
-  clhs = derive2 { name="clhs"; version="0.6-0"; sha256="1vw8z4kmmpd8sbx7n8fzdd7lhg10qpnnx31nnjhv4dbd6v2nqii9"; depends=[cluster ggplot2 plyr raster reshape2 scales sp]; };
-  cli = derive2 { name="cli"; version="1.0.0"; sha256="07as3dr7vwx02p3qgzlmxz1dlrd3x3lysrzp222ip9jcjpydp8wg"; depends=[assertthat crayon]; };
-  clickR = derive2 { name="clickR"; version="0.4.05"; sha256="0vi8bgvnlq09wxzc51kllngcw9dw3j2m2rh6dwa017xml2cl37j8"; depends=[beeswarm boot flextable lme4 lmerTest officer xtable]; };
+  clhs = derive2 { name="clhs"; version="0.7-0"; sha256="0wliffs16misvlsxcng89a6yasq9blrlic88n59334vj60p42l3m"; depends=[cluster ggplot2 plyr raster reshape2 scales sp]; };
+  cli = derive2 { name="cli"; version="1.0.1"; sha256="1r2yih4c0bdmbx0qrarlf0m1p5z30sri755zmdazsq2pw76zp07g"; depends=[assertthat crayon]; };
+  clickR = derive2 { name="clickR"; version="0.4.20"; sha256="140ncl7iv48yxnwf55rf8cwcyznzw7kslkjzymslyqmhvvw43q6p"; depends=[beeswarm boot flextable lme4 lmerTest officer xtable]; };
   clickstream = derive2 { name="clickstream"; version="1.3.0"; sha256="01bii527xy7hdph1pm6f1g4qnwa5yf3mwz01rjg1h2gc12s5vzgg"; depends=[arules ClickClust data_table ggplot2 igraph linprog MASS plyr reshape2 Rsolnp]; };
-  clifro = derive2 { name="clifro"; version="3.1-5"; sha256="1fbl5zljy60xp3klrsgs84rqw9484xmyq84n3wkrqc6pyvhskp4c"; depends=[ggplot2 lubridate RColorBrewer RCurl reshape2 scales selectr XML]; };
+  clifro = derive2 { name="clifro"; version="3.2-0"; sha256="1pq66wg19dvmacqj5pdh8ngxq1irihg76g0hnfy16gxsz7snvnkh"; depends=[ggplot2 lubridate magrittr RColorBrewer RCurl reshape2 scales xml2]; };
   clikcorr = derive2 { name="clikcorr"; version="1.0"; sha256="0zdnbcl5q293mmm6pbn4ri7p1q6z6sff74axsb3nyd153v2xamr5"; depends=[mvtnorm]; };
   climatol = derive2 { name="climatol"; version="3.1.1"; sha256="012spjgw20bg4rlxgwh05rhaswa4afbd35sq1isidm6i73ma0yjq"; depends=[mapdata maps]; };
   climbeR = derive2 { name="climbeR"; version="0.0.1"; sha256="10i74bph7dhv2xj01qdhymlmfwj32lzxivanif11zmzmq9p5bqsw"; depends=[ggplot2]; };
-  climdex_pcic = derive2 { name="climdex.pcic"; version="1.1-6"; sha256="0dyhqxrma8g4ny4afv6drr885m88q2b8g1n19yy3yjbrbddyz8yl"; depends=[caTools PCICt Rcpp]; };
+  climdex_pcic = derive2 { name="climdex.pcic"; version="1.1-9"; sha256="0bnxdfqc207fjjb8qas9wvmw1kpi69csadx5ylsbxwb53cy1g93i"; depends=[PCICt Rcpp]; };
   clime = derive2 { name="clime"; version="0.4.1"; sha256="0qs9i7cprxddg1cmxhnmcfhl7v7g1r519ff2zfipxbs59m5xk9sf"; depends=[lpSolve]; };
   climextRemes = derive2 { name="climextRemes"; version="0.2.0"; sha256="0cjvmd48iaid0f95354zpxlgwy79jga9lz0p82yiv0fb2mvjpbqn"; depends=[boot extRemes]; };
   climwin = derive2 { name="climwin"; version="1.2.0"; sha256="0xqgf9hmpidxq85rfm0vndh3waw0qf2yhrzmp04sqbbqhzkf9v7n"; depends=[evd ggplot2 gridExtra lme4 lubridate Matrix MuMIn nlme numDeriv plyr RcppRoll reshape]; };
@@ -5124,37 +5347,38 @@ in with self; {
   clogitboost = derive2 { name="clogitboost"; version="1.1"; sha256="19wcb7229amlxn6xahxj6pf9rwfm02s7qkxz2yvyhnq95y0clxkm"; depends=[Rcpp]; };
   clordr = derive2 { name="clordr"; version="1.3.0"; sha256="16cw6i91azi3xw9slzy2v8vpdkqik8k02mvgvcl9a3irbl7wgz10"; depends=[doParallel foreach MASS pbivnorm rootSolve ttutils]; };
   cloudUtil = derive2 { name="cloudUtil"; version="0.1.12"; sha256="18g946j00anlk20d0fh01w0xyj1kwyy7jhlgz5a85wmp6s2gkz74"; depends=[]; };
-  cloudml = derive2 { name="cloudml"; version="0.5.1"; sha256="1h276vxb1cfqlcbj9fciysdj4wr9zvwglxfq2sh6hh08lm1w3c0z"; depends=[jsonlite packrat processx rprojroot rstudioapi tfruns withr yaml]; };
-  clpAPI = derive2 { name="clpAPI"; version="1.2.7"; sha256="19bn5d7qjj7g0x17jnh2snymcn2r2skzj35hkhsgcj5r43834f3r"; depends=[]; };
+  cloudml = derive2 { name="cloudml"; version="0.6.0"; sha256="0p34wrrs06c17lbjlkjhm04ffg3l3zfkxb7swikjbim0j5aww2kh"; depends=[config jsonlite packrat processx rprojroot rstudioapi tfruns withr yaml]; };
+  clpAPI = derive2 { name="clpAPI"; version="1.2.9"; sha256="1dgfs124lcarcwh75f5mi5z9y723s2ik5kz2g9fxgcama7r01a1x"; depends=[]; };
   clttools = derive2 { name="clttools"; version="1.3"; sha256="0va9k1b4xsb2sgpxzvid6sa8m6b8i3r4kgghclmb78nnrs480cwi"; depends=[]; };
   clubSandwich = derive2 { name="clubSandwich"; version="0.3.2"; sha256="1q4kidxcarlazh9zaav6vdc7ixb3hdg3zh5kr6mwkm087gi05nw5"; depends=[sandwich]; };
-  clue = derive2 { name="clue"; version="0.3-55"; sha256="0hprhzd9i5ifrmfcgddgacg404f6y1zpcpqbyqza4c5lw44am4nc"; depends=[cluster]; };
+  clue = derive2 { name="clue"; version="0.3-56"; sha256="1gc7galavhivs2102vvc8c51555hghkawiv8vzciwwpscr19zxg9"; depends=[cluster]; };
   clues = derive2 { name="clues"; version="0.5.9"; sha256="0znlsbfmnz5wkp2cswrkjbgchdmmf7h78mv2zwx382m9n9n9hshy"; depends=[]; };
-  clusrank = derive2 { name="clusrank"; version="0.5-3"; sha256="0am8q6xc9x9g42gmn0khdizlwrz3ssrripqrw0a36apzk61i6qpp"; depends=[MASS Rcpp]; };
+  clusrank = derive2 { name="clusrank"; version="0.6-2"; sha256="1hjxks8cb1mp1d93rcpwqjrxqavspmzjrxvflhv6nqx41ar9dpxv"; depends=[MASS Rcpp]; };
   clust_bin_pair = derive2 { name="clust.bin.pair"; version="0.1.2"; sha256="11lqd3vmx4kg08n6iv9na8rra49dkldx4f8jyf43hppbjrbvfinm"; depends=[]; };
   clustEff = derive2 { name="clustEff"; version="0.1.2"; sha256="1hy7jc8yfg554l439lfrppdsizrdmvxrqf9dwbkjckbvggg54f0k"; depends=[cluster fda qrcm]; };
   clustMD = derive2 { name="clustMD"; version="1.2.1"; sha256="0w4s9dab2mm5x0xibyl6s101c64if945a2cmwin9psd95p76mcny"; depends=[ggplot2 MASS mclust msm mvtnorm reshape2 truncnorm viridis]; };
-  clustMixType = derive2 { name="clustMixType"; version="0.1-29"; sha256="01rc84ppy5mw3cdcx15xs6061lg1mwh6kxa80rnj3ax3g10x37sh"; depends=[RColorBrewer]; };
+  clustMixType = derive2 { name="clustMixType"; version="0.1-36"; sha256="111pnhj92hly3a1km41wdq3w80s6lld8j31rygbczb5dig5cmlb9"; depends=[RColorBrewer]; };
   clustRcompaR = derive2 { name="clustRcompaR"; version="0.2.0"; sha256="151xq8qf1mrl35kyhdliwl2jpdkpkbl3gdnrvrybanihry2p0kqg"; depends=[dplyr ggplot2 ppls quanteda]; };
   cluster = derive2 { name="cluster"; version="2.0.7-1"; sha256="1grxbifbc4nwig25dmjgkympnbzb4al0w6k1c0ibdhpk1h4l20di"; depends=[]; };
   cluster_datasets = derive2 { name="cluster.datasets"; version="1.0-1"; sha256="0i68s9305q08fhynpq24qnlw03gg4hbk4184z3q3ycbi8njpr4il"; depends=[]; };
-  clusterCrit = derive2 { name="clusterCrit"; version="1.2.7"; sha256="13smdm8dmp4795qqn8an3k22l7xs4i4kgazyjzxdbzkg742akk7q"; depends=[]; };
+  clusterCrit = derive2 { name="clusterCrit"; version="1.2.8"; sha256="10pz1bikdbkm2ky3xnagp0qv60whalavp6j39b4p7d75jj5xcxgk"; depends=[]; };
   clusterGeneration = derive2 { name="clusterGeneration"; version="1.3.4"; sha256="1ak8p2sxz3y9scyva7niywyadmppg3yhvn6mwjq7z7cabbcilnbw"; depends=[MASS]; };
   clusterGenomics = derive2 { name="clusterGenomics"; version="1.0"; sha256="127hvpg06is4x486g1d5x7dfkrbk7dj35qkds0pggnqxkq3wsc1c"; depends=[]; };
   clusterPower = derive2 { name="clusterPower"; version="0.6.111"; sha256="1mwq188x9d495my75cdcahfjm3w46cas9jqxks5c0j63395cw9g3"; depends=[lme4]; };
-  clusterRepro = derive2 { name="clusterRepro"; version="0.5-1.1"; sha256="0vsf6cq6d51a4w23ph8kdz2h8dfpzyd6i85049p2wakn1kdvkz5p"; depends=[]; };
+  clusterRepro = derive2 { name="clusterRepro"; version="0.9"; sha256="0s7qqvaf5yxxwhw6qyzfmk65c49yz405gljarwav6aglkx9883cl"; depends=[]; };
   clusterSEs = derive2 { name="clusterSEs"; version="2.5"; sha256="0m7vlcjs6zmfaxi1kn68fgcvfrb1gpky2fcg8jhrwc3yxzg23m74"; depends=[AER Formula lmtest mlogit plm sandwich]; };
-  clusterSim = derive2 { name="clusterSim"; version="0.47-1"; sha256="0k9cn0ycz7l9g4lb434cqp9yx2ilmp25xa5hlhma9jmxlbdsbji2"; depends=[ade4 cluster e1071 MASS modeest R2HTML rgl]; };
+  clusterSim = derive2 { name="clusterSim"; version="0.47-2"; sha256="151cg89ac8b66bgcgpl3w9wvbvxs9g3v9vh8f3z6vg6fklrf5x2d"; depends=[ade4 cluster e1071 MASS modeest R2HTML rgl]; };
   clusteredinterference = derive2 { name="clusteredinterference"; version="1.0.0"; sha256="1dnbymivxkrhx39maannhvm8ynlgjxsiavd2d9ych5nq4mjvhnjg"; depends=[cubature Formula lme4 numDeriv rootSolve]; };
   clusterfly = derive2 { name="clusterfly"; version="0.4"; sha256="0mxpn7aywqadyk43rr7dlvj0zjcyf4q7qbqw5ds38si7ik34lkrg"; depends=[e1071 plyr reshape2 rggobi RGtk2]; };
   clusterhap = derive2 { name="clusterhap"; version="0.1"; sha256="1ic6588mqp146jsvrxlxk449zw4n81xixgrny9r29497z7hg5a1m"; depends=[]; };
   clustering_sc_dp = derive2 { name="clustering.sc.dp"; version="1.0"; sha256="0cppka7613cbjjf1q2yp6fln511wbqdhh8d4gs6p0fbq379kzmvc"; depends=[]; };
-  clusterlab = derive2 { name="clusterlab"; version="0.0.2.2"; sha256="0pls0yk5x1a48kg1vwzm60yvpmy85gflg9kf0znvkv4k4xrz5smc"; depends=[ggplot2 reshape]; };
-  clustermq = derive2 { name="clustermq"; version="0.8.4.1"; sha256="0j8xaj2spqsvr1dmzz2xi8qwwwyvhw8nmrg3jy52zk20pcqw3c03"; depends=[infuser narray progress purrr R6 rzmq]; };
+  clusterlab = derive2 { name="clusterlab"; version="0.0.2.5"; sha256="0v9nk92sbca66w416jhvrq3ldgsc76mlir89yi2r4k2i8ymw1xr6"; depends=[ggplot2 reshape]; };
+  clustermq = derive2 { name="clustermq"; version="0.8.5"; sha256="0asa48gx9wycp87qgk7f6h27kp4kr5bpxs1lx1j2jm7b1ssqjsm4"; depends=[infuser narray progress purrr R6 rzmq]; };
   clusternomics = derive2 { name="clusternomics"; version="0.1.1"; sha256="05nkw6h2dvky07fj50myzw5xlkqyiflbn4vwqw8a1q2idv4awi7b"; depends=[magrittr MASS plyr]; };
   clustertend = derive2 { name="clustertend"; version="1.4"; sha256="1aqg8cy1hk3lmzvyqh9qc1mcknrva2i0c77hyd0yff9whz80ik4j"; depends=[]; };
   clusteval = derive2 { name="clusteval"; version="0.1"; sha256="1ld0bdl4fy8dsfzm3k7a37cyxc6pfc9qs31x4pxd3z5rslghz7rj"; depends=[mvtnorm Rcpp]; };
   clustrd = derive2 { name="clustrd"; version="1.2.2"; sha256="0jcx6afns87wyrc7j2rmc57q4447caxwrkq0j7fys5jbkcidw7bh"; depends=[ca cluster corpcor dplyr dummies fpc GGally ggplot2 ggrepel plyr]; };
+  clustree = derive2 { name="clustree"; version="0.2.2"; sha256="14n4h7200r66k74jljkgrihz9znv96d2lr2jp878rq07sszjy90h"; depends=[checkmate dplyr ggplot2 ggraph ggrepel igraph rlang tidygraph viridis]; };
   clustsig = derive2 { name="clustsig"; version="1.1"; sha256="0n5nf712vsa8zb0c2lv4gjqsgva62678vjngr9idgswb73shxm8v"; depends=[]; };
   clustvarsel = derive2 { name="clustvarsel"; version="2.3.2"; sha256="11xd3pgr4i15q9rcim8y6ybi1iijv59k7f8wh0b2368kz3kz54cj"; depends=[BMA foreach iterators Matrix mclust]; };
   clv = derive2 { name="clv"; version="0.3-2.1"; sha256="1qgp2qhblg6ysyrlg0ad169ahwhcyn5pvsqzdlqj700y1k7wl7mc"; depends=[class cluster]; };
@@ -5166,32 +5390,34 @@ in with self; {
   cmpprocess = derive2 { name="cmpprocess"; version="1.0"; sha256="0gqfmbm86bfi2l81pf2dn70rxg58h1y8hiyrp8sv9v84cx20422v"; depends=[compoisson numDeriv]; };
   cmprsk = derive2 { name="cmprsk"; version="2.2-7"; sha256="1imr3wpnj4g57n2x4ryahl4lk8lvq9y2r7319zv3k82mznha8bcm"; depends=[survival]; };
   cmprskQR = derive2 { name="cmprskQR"; version="0.9.1"; sha256="002s6ls670sdzrxgqv9gbl646b675q1gn6dzkngnf6rgcdqwid7n"; depends=[quantreg survival]; };
-  cmrutils = derive2 { name="cmrutils"; version="1.3"; sha256="0zjc0bwp2p03hmnj3zjw7800pcdw8b8161y68npyp3hya0s4i9x0"; depends=[chron]; };
-  cmsaf = derive2 { name="cmsaf"; version="1.9.1"; sha256="02l1g5l42lxg3wlpjg5qm6h8mfr1bdcpi052z8masxf6xf4l0abr"; depends=[fields ncdf4 raster sp]; };
-  cmvnorm = derive2 { name="cmvnorm"; version="1.0-3"; sha256="0810kzg78yaxzniq59a4swvdk9qxp37ja52f5n1zssgn0cwz1vk9"; depends=[elliptic emulator]; };
+  cmrutils = derive2 { name="cmrutils"; version="1.3.1"; sha256="0nrq84bkd23lvvg8ls2smkjcnfnydhbcni3n6s8w0579i9xga8dv"; depends=[chron]; };
+  cmsaf = derive2 { name="cmsaf"; version="1.9.4"; sha256="01z6i3vjilr8nhjkdjifhg3vbfpkk7rii4hlv6rhy9cvpqs6f1d6"; depends=[fields ncdf4 raster sp]; };
+  cmvnorm = derive2 { name="cmvnorm"; version="1.0-5"; sha256="1cyiw12fmm83xjlsj8wszyr9sym1b4y3cns6naagvv8037wnh0wb"; depends=[elliptic emulator]; };
   cna = derive2 { name="cna"; version="2.1.1"; sha256="1m4920ya3nm5x5yyzpd4g0vgnk4f0lc62c2favymk03ldg6kd6c4"; depends=[matrixStats Rcpp]; };
   cnbdistr = derive2 { name="cnbdistr"; version="1.0.1"; sha256="05qi41jimslbngjgbwzfda0q25hb28ax79v9yckvrbpgjc8dk990"; depends=[hypergeo]; };
   cncaGUI = derive2 { name="cncaGUI"; version="1.0"; sha256="1v55kvrc05bsm1qdyfw3r3h64wlv3s6clxbr8k512lfk99ry42kn"; depends=[MASS plotrix rgl shapes tcltk2 tkrplot]; };
   cnmlcd = derive2 { name="cnmlcd"; version="1.2-0"; sha256="1vpn926wf8vkifscnb35y4c74721iar2wykrl50fcv0fg16yggnd"; depends=[lsei]; };
-  coRanking = derive2 { name="coRanking"; version="0.1.3"; sha256="1ss00l0c99fi9p6gcimb31nrl5iflps6lvplnjjqwcqjkb2pjh9p"; depends=[Rtsne scatterplot3d]; };
+  coRanking = derive2 { name="coRanking"; version="0.1.4"; sha256="03wvy19jrb3q31yfpmakji25zwc6zx26irj4rwkad81iwdqihq3s"; depends=[]; };
   coala = derive2 { name="coala"; version="0.5.2"; sha256="1rj9my20ba79alkhszh5lfvb9gjr6vcgiwqk2szawkpd1np3lpsr"; depends=[assertthat digest R6 Rcpp RcppArmadillo rehh scrm]; };
   coalescentMCMC = derive2 { name="coalescentMCMC"; version="0.4-1"; sha256="0xxv1sw5byf84wdypg5sfazrmj75h4xpv7wh4x5cr9k0vgf80b3s"; depends=[ape coda lattice Matrix phangorn]; };
-  coalitions = derive2 { name="coalitions"; version="0.6.2"; sha256="0plzrjjsbbr5mw6wqirxp1wgpl2bw2kh0gdalr8c8v2z7hc1d9r6"; depends=[checkmate dplyr forcats gtools jsonlite lubridate magrittr purrr RCurl reshape2 rlang rvest stringr tidyr xml2]; };
+  coalitions = derive2 { name="coalitions"; version="0.6.5"; sha256="0s91yg60cpnn2fd185m7bww93kls4qlcq6bcy5nr5kmgiscril3p"; depends=[checkmate dplyr forcats gtools jsonlite lubridate magrittr purrr RCurl reshape2 rlang rvest stringr tidyr xml2]; };
   coarseDataTools = derive2 { name="coarseDataTools"; version="0.6-3"; sha256="0f1fkpmqq142yrqzbqv11s5q4jkq7dilmrllcns871hc6vah6ikd"; depends=[MCMCpack]; };
-  cobalt = derive2 { name="cobalt"; version="3.3.0"; sha256="12pdcdjca9lncvjpdmpss74sz4jlk33p1l6nmyk2qvwzpf2s8f1d"; depends=[crayon ggplot2 ggstance]; };
+  cobalt = derive2 { name="cobalt"; version="3.5.0"; sha256="0vczislwy92a7p91ip0mwhh6v5n4wgk7fy9dqc1r746ivx8h13yv"; depends=[crayon ggplot2 ggstance]; };
+  cobiclust = derive2 { name="cobiclust"; version="0.1.0"; sha256="068cqrhx7lxsvcjb62rgrca7y20cybz4445bl1qc6k16ca4bh0m9"; depends=[cluster]; };
   cobs = derive2 { name="cobs"; version="1.3-3"; sha256="1pqvz7czcchri4x79g78hbwyagb3bqzdqb047zkbdinyz067c7kb"; depends=[quantreg SparseM]; };
-  cocktailApp = derive2 { name="cocktailApp"; version="0.1.0"; sha256="0gc75qy0k01z0r5hl07gyc3gi98fcmapwq523vldp04arn3glnb4"; depends=[dplyr DT forcats ggplot2 ggtern magrittr shiny shinythemes tibble tidyr]; };
+  cocktailApp = derive2 { name="cocktailApp"; version="0.2.0"; sha256="05jw72v7gayyfflyy5g249d4sl689a55bf7ycijiks2s5gbj68b6"; depends=[dplyr DT forcats ggplot2 magrittr shiny shinythemes Ternary tibble tidyr]; };
   cocor = derive2 { name="cocor"; version="1.1-3"; sha256="106zyrrypil8jyg0pva5zj4hgb53z81nca3d0mh2q3j55zq3wl12"; depends=[]; };
   cocoreg = derive2 { name="cocoreg"; version="0.1.1"; sha256="0jrrkak964pl1vih592jgqgl6bw08j0fa1rh3j85x64bqq4m7278"; depends=[abind CCAGFA combinat e1071 ggplot2 glmnet gridExtra MASS multiway pls reshape RGCCA]; };
   cocorresp = derive2 { name="cocorresp"; version="0.3-0"; sha256="1r1ssz0cip1gk52nkbr1kpz8gwrg6lwri8ymk41xj2adlsp576v2"; depends=[vegan]; };
   cocron = derive2 { name="cocron"; version="1.0-1"; sha256="0dl14y9v9kndy5gzhhbhq3f31ja724y1hra40givy6bij7h2cj30"; depends=[]; };
-  coda = derive2 { name="coda"; version="0.19-1"; sha256="14a4a8df4ygj05h37chmdn8kzcqs07fpbflxfrq530563mrza7yl"; depends=[lattice]; };
-  coda_base = derive2 { name="coda.base"; version="0.1.9"; sha256="0m4a77l34bk0bwcsvc8654hf5pinf2p7k2223vxkrq5ldylpwqax"; depends=[MASS Rcpp RcppArmadillo]; };
+  coda = derive2 { name="coda"; version="0.19-2"; sha256="03fs3sdrrym3is92dgpa6ydk3m63gaihwy7bva4k0wm2hxm7x2k7"; depends=[lattice]; };
+  coda_base = derive2 { name="coda.base"; version="0.1.10"; sha256="14qpvwxymgph1zc5f7bskkizq4zilwrl40mjl2j718bpmzk0v4za"; depends=[MASS Rcpp RcppArmadillo]; };
   codadiags = derive2 { name="codadiags"; version="1.0"; sha256="1x243pn6qnkjyxs31h1hxy8x852r0fc952ww77g40qnrk8qw79xg"; depends=[coda]; };
-  codebook = derive2 { name="codebook"; version="0.5.9"; sha256="12hycq576klq12lqqkwjvxi2k2axl34zs78hfy78mlwlbcgm51gk"; depends=[dplyr DT future ggplot2 haven htmltools knitr labeling likert mice pander psych purrr readr rio rlang rmarkdown skimr stringr tibble tidyr]; };
+  codebook = derive2 { name="codebook"; version="0.6.3"; sha256="1ki22x2ngaxg3p7g8jm7d70r17amwgis9ib1nbbfhkp9c6ki6jx9"; depends=[dplyr DT future ggplot2 haven htmltools knitr labeling labelled likert mice miniUI pander psych purrr rio rlang rmarkdown rstudioapi shiny skimr stringr tibble tidyr]; };
   codemetar = derive2 { name="codemetar"; version="0.1.6"; sha256="1jjm1c7fkrzyhb57ckdf3d808im5j6c20ykkjsnddh220jy4sgss"; depends=[crul curl desc devtools gh git2r jsonld jsonlite memoise purrr readr sessioninfo stringi stringr tibble usethis whisker]; };
   codep = derive2 { name="codep"; version="0.9-1"; sha256="17jziwm56icswa4ngp51ah8w1ma7ij3cksbdaipk0ikqvb5kinkb"; depends=[]; };
   codetools = derive2 { name="codetools"; version="0.2-15"; sha256="0h7sjmvvsi35041jp47cxhsqzgf1y8jrw6fxii7n26i8g7nrh1sf"; depends=[]; };
+  codified = derive2 { name="codified"; version="0.2.0"; sha256="1hmw7yrw4qx8v9rkqqvqf4013s9whq5qlgwz7v882j4slpvm6gb1"; depends=[checkmate dplyr kableExtra knitr magrittr readr rlang tibble tidyr]; };
   codingMatrices = derive2 { name="codingMatrices"; version="0.3.2"; sha256="0kldx2h3mksw4644d0ask6ij7i63rrwk0njlsvkbdjz3bf7pdv1b"; depends=[fractional Matrix]; };
   codyn = derive2 { name="codyn"; version="2.0.0"; sha256="1h58w4hb5m8qy7i5h1r7306c5aac1j887aig0imgsjhinj48pi5l"; depends=[assertthat permute vegan]; };
   coefficientalpha = derive2 { name="coefficientalpha"; version="0.5"; sha256="0pfw64z7f0gp415nn7519rcw829a7wnwnjx94sc55jsvgb1di3kc"; depends=[lavaan rsem]; };
@@ -5208,8 +5434,9 @@ in with self; {
   cointmonitoR = derive2 { name="cointmonitoR"; version="0.1.0"; sha256="0rsacvib9prgb199m5ndi0zlgfsvf1giqc5s41wp0yvxdxjdq5lw"; depends=[cointReg matrixStats]; };
   colf = derive2 { name="colf"; version="0.1.3"; sha256="1av82yrp6csw7700ymipd02j73cmzn0apv7ykachjw09nzk86kvj"; depends=[nlsr]; };
   collUtils = derive2 { name="collUtils"; version="1.0.5"; sha256="0gbk3lrb2lwq2ixrpcngng6qz6axjb4iyqy5606x1zmjm71c060p"; depends=[Rcpp rJava]; };
-  collapsibleTree = derive2 { name="collapsibleTree"; version="0.1.6"; sha256="1l02rk1lmm2ac9rr5p1633y1chc203cr9mhlc9s95bv12791i5zb"; depends=[data_tree htmlwidgets]; };
+  collapsibleTree = derive2 { name="collapsibleTree"; version="0.1.7"; sha256="0b65pbp1wnpsrayqi630ds4r98jvcvynnlp6wxdqrnnr9nzw5343"; depends=[data_tree htmlwidgets]; };
   collectArgs = derive2 { name="collectArgs"; version="0.4.0"; sha256="0fz5w1xsxiddzrwahrg50px4igyhd4plq655jaix6grancs7kvix"; depends=[magrittr]; };
+  collections = derive2 { name="collections"; version="0.1.2"; sha256="10crxbbxihcln58j6rlw1kh9qf1njpi0njb7sary80rcfhxwc4w4"; depends=[R6]; };
   collpcm = derive2 { name="collpcm"; version="1.0"; sha256="15k6khsgikjpsasyz02bhgd43nij2n7nl0m0sgxvjlcn0nv95y2n"; depends=[latentnet network vegan]; };
   colmozzie = derive2 { name="colmozzie"; version="1.1.1"; sha256="0sn7dqg7rnddnmdb10c6scws6kgi1lz4lw8nc698x63z431ah1p8"; depends=[]; };
   coloc = derive2 { name="coloc"; version="3.1"; sha256="1321675wz1vn7rcd2sm4c9h183nwnmp0lqww5nykjf792ijyaal8"; depends=[BMA flashClust ggplot2 reshape snpStats speedglm]; };
@@ -5219,18 +5446,19 @@ in with self; {
   colordistance = derive2 { name="colordistance"; version="1.0.0"; sha256="1z4pa5byk1ag6pqdqi6sn5z6caak4733399gk6zp4wi4kfd9p64a"; depends=[abind ape clue emdist gplots jpeg magrittr mgcv plotly png scatterplot3d spatstat]; };
   coloredICA = derive2 { name="coloredICA"; version="1.0.0"; sha256="1xj4dsrwgqzm2644nk3y8nj47m036b4ylh6v60jccj3707spb32r"; depends=[MASS]; };
   colorednoise = derive2 { name="colorednoise"; version="1.0.3"; sha256="1idwb4w1r7jpjvrlly8326i4d9lw6bjlmlb591hgwl5xdf4599gi"; depends=[dplyr purrr Rcpp RcppArmadillo tidyr]; };
+  colorfindr = derive2 { name="colorfindr"; version="0.1.3"; sha256="0h74075km6hxf9j35iwsd3af0igfpplgjnh3lzgkdqw0shp86iy8"; depends=[bmp dplyr jpeg magrittr pixmap plotly plotwidgets png purrr rsvg stringr tibble tiff treemap]; };
   colorfulVennPlot = derive2 { name="colorfulVennPlot"; version="2.4"; sha256="01b3c060fbnap78h9kh21v3zav547ak2crdkvraynpd2096yk51w"; depends=[]; };
   colorhcplot = derive2 { name="colorhcplot"; version="1.3.1"; sha256="009pyyb30kwshldd7v7zfy5rxys6i0dhlc5w8ail61acbg4rlrmz"; depends=[]; };
   colormap = derive2 { name="colormap"; version="0.1.4"; sha256="0032ji9n8pivl70jppq989fgg781wil8zag7pfl1hs9xrpin8asy"; depends=[ggplot2 stringr V8]; };
   colorpatch = derive2 { name="colorpatch"; version="0.1.2"; sha256="18p9hgccp37pbdf437xffkv6z500896v08fsw2jm8zcl9ladygaf"; depends=[colorspace ggplot2 gridExtra TSP]; };
-  colorplaner = derive2 { name="colorplaner"; version="0.1.3"; sha256="0mqqk59yjklbc7a0n7jgyhj458622dfdsa1101a5w6kwppbjvnfg"; depends=[digest ggplot2 gtable scales]; };
   colorr = derive2 { name="colorr"; version="1.0.0"; sha256="1wwrgb9fc9gzxxwxrdrkwwrmhqqllv29wr4q8y1shj9d3nzcpwmh"; depends=[]; };
-  colorscience = derive2 { name="colorscience"; version="1.0.4"; sha256="19943gnzszh13mg74clbkhbc6xg4259ilqk19mrv8d6ml6f6wspl"; depends=[Hmisc munsellinterpol pracma sp]; };
+  colorscience = derive2 { name="colorscience"; version="1.0.5"; sha256="0pr28fhv7alvki9f6wncys8lxihsl6q6lr8xffw4fkkgyapnhqxg"; depends=[Hmisc pracma sp]; };
   colorspace = derive2 { name="colorspace"; version="1.3-2"; sha256="0d1ya7hx4y58n5ivwmdmq2zgh0g2sbv7ykh13n85c1355csd57yx"; depends=[]; };
   colortools = derive2 { name="colortools"; version="0.1.5"; sha256="0z9sx0xzfyb5ii6bzhpii10vmmd2vy9vk4wr7cj9a3mkadlyjl63"; depends=[]; };
   colourlovers = derive2 { name="colourlovers"; version="0.2.2"; sha256="0fgxs73l4g1lnmc2q613ykxxrbmvq6w66zpidccqg64wa9cy5yhm"; depends=[jsonlite png XML]; };
   colourpicker = derive2 { name="colourpicker"; version="1.0"; sha256="0z3v2083g7kwdp21x9s2n1crfh24agpdq3yxkcdzc2awn2pwpnpi"; depends=[ggplot2 htmltools htmlwidgets jsonlite miniUI shiny shinyjs]; };
-  colourvision = derive2 { name="colourvision"; version="2.0.1"; sha256="009nssi996dakjggk64zzmfx9mjdfj04kfy7ds3c9fsb39ynz1ag"; depends=[Matrix rgl]; };
+  colourvalues = derive2 { name="colourvalues"; version="0.1.1"; sha256="1ip1linid749h5lv0x1jlndwx57n8qidglcghspdpnvsccl8cm03"; depends=[BH Rcpp]; };
+  colourvision = derive2 { name="colourvision"; version="2.0.2"; sha256="15ndhqpp5fi9jgiri9ysl68nf4rdamh9c25svf5nvh2wvv8shrd9"; depends=[Matrix rgl]; };
   colr = derive2 { name="colr"; version="0.1.900"; sha256="0ilz1y0jd2vgyh81g3dwx2l64sir6z6sgmqx7lnvr1hafsqnwfc8"; depends=[]; };
   colt = derive2 { name="colt"; version="0.1.1"; sha256="028jqvgr14ig8jxp8h2lrf7mainzppgqh6v1479qfv4l9is3bnwy"; depends=[crayon]; };
   comato = derive2 { name="comato"; version="1.1"; sha256="0lidwr5vw10655p7q0iqzq3phq5y1i86w3bjdv87cwx3m6333bz6"; depends=[cluster clusterSim gdata igraph lattice Matrix XML]; };
@@ -5241,31 +5469,34 @@ in with self; {
   comf = derive2 { name="comf"; version="0.1.7"; sha256="1waxapw870fssmy9mzzpslypbal7vanlajzv9ffnsh5w2yzjdpfi"; depends=[plyr]; };
   commandr = derive2 { name="commandr"; version="1.0.1"; sha256="1d6cha5wc1nx6jm8jscl7kgvn33xv0yxwjf6h3ar3dfbvi4pp5fk"; depends=[]; };
   commentr = derive2 { name="commentr"; version="1.0.4"; sha256="0anlcbk8rj0yr8i23qmr6v5ws0695nkc3mvgr6pnq1fg2d4c4brj"; depends=[stringr]; };
-  commonmark = derive2 { name="commonmark"; version="1.5"; sha256="1jwx5rgm0ypd9a3v4jd9za4a644rdzhk1n4dvmgkj9hdpwsida3z"; depends=[]; };
-  commonsMath = derive2 { name="commonsMath"; version="1.1"; sha256="0v9jlk75ihh8yjhq5ybighvndp0hn1d6rqh78jkh4g6ylhbpvcw0"; depends=[]; };
-  comorbidity = derive2 { name="comorbidity"; version="0.1.1"; sha256="0xb3k2ql3ikdbyx8l73wsrwi62ayapszbrygk8arw1g2n0yqz2f4"; depends=[checkmate]; };
+  commonmark = derive2 { name="commonmark"; version="1.6"; sha256="1xymqncf8byqxzpx64zlp6vbx7gry572jkr2ax0zlavr8bli861x"; depends=[]; };
+  commonsMath = derive2 { name="commonsMath"; version="1.2"; sha256="1j914f4fqrzp4wwis7i14krsxbdwb2dznzrjdnimy1irs1macyw3"; depends=[]; };
+  comorbidity = derive2 { name="comorbidity"; version="0.2.0"; sha256="0imdnd9fxbl0d5vy1ia7844har8k689mvwbqa7pdy3rz9wmp2q3z"; depends=[checkmate stringi]; };
   compHclust = derive2 { name="compHclust"; version="1.0-3"; sha256="0agay7rn5mrw07imz4l547b7m9pfcg3rhz4krfxrvg1q2z2kryvj"; depends=[]; };
   compactr = derive2 { name="compactr"; version="0.1"; sha256="0f2yds6inmx0lixj08ibqyd2i61l2cbg1ckgpb8dl2q7kcyyd6mx"; depends=[]; };
   compare = derive2 { name="compare"; version="0.2-6"; sha256="0k9zms930b5dz9gy8414li21wy0zg9x9vp7301v5cvyfi0g7xzgw"; depends=[]; };
   compareC = derive2 { name="compareC"; version="1.3.1"; sha256="0dachfr23lps2jj1y5gc958k54vskmww84gdgk4amihsdgjsnphg"; depends=[]; };
-  compareDF = derive2 { name="compareDF"; version="1.5.0"; sha256="0nn8yimmi1yqb5qf4brx7i8zps1mfh6w3gfx3xpsaigk1miik1hb"; depends=[dplyr htmlTable stringr tidyr]; };
+  compareDF = derive2 { name="compareDF"; version="1.7.0"; sha256="0gcvhw4rsf9rrx1xb4mv8d5bjvrs51fqgl6vdd8c8jpvdy01q2i5"; depends=[dplyr htmlTable magrittr stringr tidyr]; };
   compareGroups = derive2 { name="compareGroups"; version="3.4.0"; sha256="057578433ms4q2xs62zbv36gwx67ihwdlxl243p10y1y7ps335kg"; depends=[epitools gdata HardyWeinberg Hmisc knitr rmarkdown SNPassoc survival xtable]; };
   compareODM = derive2 { name="compareODM"; version="1.2"; sha256="019hq8j56asjvh4x1p65785mf38xr05j3by0749gl9k9yl8645da"; depends=[XML]; };
   comparer = derive2 { name="comparer"; version="0.1.1"; sha256="1nmvqzrvyxdsidkr243qdn0lj2s7j3jv1sh0mdlxm2v5063nyryr"; depends=[progress]; };
   comparison = derive2 { name="comparison"; version="1.0-4"; sha256="0pc462rhk8gr8zrf08ksi315kmhydlp027q5gd40ap5mmhk7rd82"; depends=[isotone]; };
+  compboost = derive2 { name="compboost"; version="0.1.0"; sha256="0q7jfj5yc2jvddyyhnzv8fnlmngjfws7cg2blxai76s2fw6bmgxp"; depends=[checkmate glue R6 Rcpp RcppArmadillo]; };
   compeir = derive2 { name="compeir"; version="1.0"; sha256="1bb5459wcqpjic2b9kjn0l0qdn7sqmmx34hdb2aqg80q22mhx5dv"; depends=[etm lattice]; };
   compendiumdb = derive2 { name="compendiumdb"; version="1.0.3"; sha256="0glaqlzz5wr14yfhka1y7yw5ha6yc4waw61msbz0vkwj5z2hd2hk"; depends=[Biobase GEOquery RMySQL]; };
   comperank = derive2 { name="comperank"; version="0.1.0"; sha256="0fxg32kp4v42455fia48rnbd3v84g4vsh4r4qc29d0gg93ymz9hp"; depends=[comperes dplyr Rcpp rlang tibble]; };
-  comperes = derive2 { name="comperes"; version="0.2.0"; sha256="0h531xbaidh0ld16q1q4jlx4yshyiczx464x0kkyrrr7ysg527pp"; depends=[dplyr magrittr rlang tibble tidyr]; };
+  comperes = derive2 { name="comperes"; version="0.2.1"; sha256="1mi7x7634lxzzpp1z6xq0pbmfq3p63mqy3kvk19xjfbiz3drakw3"; depends=[dplyr magrittr rlang tibble tidyr]; };
   compete = derive2 { name="compete"; version="0.1"; sha256="1b1320jw8pcnjkzb0lr8j6d3z7yhlq31gszd79wdcmwnpzap9k0z"; depends=[igraph sna]; };
   complexity = derive2 { name="complexity"; version="1.1.1"; sha256="1lpsvry88jpqfw0wkdlwjzkqjl17f4adjcqvq0dwk483mi54xnfk"; depends=[combinat shiny]; };
   complexplus = derive2 { name="complexplus"; version="2.1"; sha256="16w9v7d1ckavqmr86l34frr37pkvdn0iqnb17ssb8xaggns5lgqx"; depends=[expm Matrix]; };
   complmrob = derive2 { name="complmrob"; version="0.6.1"; sha256="1dr80r1p05h3mlnjbgh6kfw86np8y2bhy9yi5qydv85w52k133n1"; depends=[boot ggplot2 robustbase scales]; };
   compoisson = derive2 { name="compoisson"; version="0.3"; sha256="0v5dl7xydqi4p97nipn4hyhpq2gghmx81ygvl0vc8b65jhq89y0p"; depends=[MASS]; };
   compositions = derive2 { name="compositions"; version="1.40-2"; sha256="12mp05yi7jkdqg9iwh6bc9sx6sdxagcnrirznxy9hq8502p7238i"; depends=[bayesm energy robustbase tensorA]; };
-  compound_Cox = derive2 { name="compound.Cox"; version="3.12"; sha256="143a0vgv86n1pz6442r7nk7hh04brz1x3na8msnm9njxf0qqjwpm"; depends=[numDeriv survival]; };
+  compound_Cox = derive2 { name="compound.Cox"; version="3.14"; sha256="118s0j8xkv0fk8hvzfyw2dwkh76ky5k98dnh92vh6akcz1wm0iam"; depends=[numDeriv survival]; };
   compute_es = derive2 { name="compute.es"; version="0.2-4"; sha256="1b5i8z66zbag0vdv98mmpwmizpm68vc3ajh0n3q94zdcmhcbx12d"; depends=[]; };
-  comtradr = derive2 { name="comtradr"; version="0.2.1"; sha256="0l14qwvnzll98jp235ip6skmr3fdr1y5niqjwhz9nyk8spfbyvp1"; depends=[httr jsonlite magrittr purrr]; };
+  comtradr = derive2 { name="comtradr"; version="0.2.2"; sha256="177gnmgwqns65z5y9nw4xp8qmw5z70454zb54jw1879xrgfsrciz"; depends=[httr jsonlite magrittr purrr]; };
+  con2aqi = derive2 { name="con2aqi"; version="0.1.0"; sha256="1gdd1y6xg26fz199hvryzsnp16qbsz13chqqxyxnkgrai1l72mhf"; depends=[]; };
+  conStruct = derive2 { name="conStruct"; version="1.0.1"; sha256="1b20r2a2xn3fwa131sk6gdhpxw79g6316fws12iph2vw0lp0gyka"; depends=[BH caroline doParallel foreach gtools Rcpp RcppEigen rstan rstantools StanHeaders]; };
   concatenate = derive2 { name="concatenate"; version="1.0.0"; sha256="1kvsw7vwa3hn97ff7r6z21h5ajs74azwv2dk4pzgyaasnbp778hw"; depends=[]; };
   concaveman = derive2 { name="concaveman"; version="1.0.0"; sha256="0b6a37h4k3p879gp4qp3297q0fzq3yn79yhkwjrcxhcl86sg5nb6"; depends=[dplyr jsonlite magrittr sf V8]; };
   conclust = derive2 { name="conclust"; version="1.1"; sha256="1k9y1mniy7s51dmm5ia693k72s2vxk5bznxxf74s7mx9n3mg2i8r"; depends=[]; };
@@ -5281,22 +5512,22 @@ in with self; {
   conditions = derive2 { name="conditions"; version="0.1"; sha256="0vhqkbsil3qfvrz7924i3wvjknw69cp27g7ayapf6w94bbggx4x8"; depends=[]; };
   condmixt = derive2 { name="condmixt"; version="1.0"; sha256="05q1fj7akf6lsq9rbcqqkzlx82jvk6mlvmwx6jzk8j228fwqmg90"; depends=[evd]; };
   condusco = derive2 { name="condusco"; version="0.1.0"; sha256="0zydinzlksynkz4r712rzv9qqdx8dkdz3h1ygi9cfmd6hya3580s"; depends=[assertthat bigrquery DBI jsonlite]; };
-  condvis = derive2 { name="condvis"; version="0.4-2"; sha256="0l515wpsmh7g4q4w29gb1gv5kafwzfhb8as0ml8vbbrh6xcgmz9q"; depends=[MASS]; };
+  condvis = derive2 { name="condvis"; version="0.5-1"; sha256="1ngxqfa0mr86cv610da4ljypxpdvx0n5pfgj3zfksnwxlwc0dvbj"; depends=[MASS]; };
   coneproj = derive2 { name="coneproj"; version="1.14"; sha256="0km7njsxjgrv4d8bx709nci59ngm00jg1r55702yapyjl0f2zg93"; depends=[Rcpp RcppArmadillo]; };
-  conf = derive2 { name="conf"; version="1.2"; sha256="1xk3b94k73msj2mykxr0b9q472biz40qnckkym82b4vqmga1c0rs"; depends=[SDMTools STAR statmod]; };
+  conf = derive2 { name="conf"; version="1.3.3"; sha256="0hankl9grc149r82v93iwrk6hf19n5ipay80cc9zv034wv2249w1"; depends=[SDMTools STAR statmod]; };
   conf_design = derive2 { name="conf.design"; version="2.0.0"; sha256="06vdxljkjq1x56xkg041l271an1xv9wq79swxvzzk64dqqnmay51"; depends=[]; };
   confSAM = derive2 { name="confSAM"; version="0.2"; sha256="1l67ndya07hh0yqfbabfhsvp3hryklx0022grpr0cb7ff88d1zam"; depends=[]; };
   confidence = derive2 { name="confidence"; version="1.1-2"; sha256="0m6iz59n5jpi0ig3za3nir4d4bdsysf5g47d2nakfmaz03wk520z"; depends=[ggplot2 knitr markdown plyr xtable]; };
   config = derive2 { name="config"; version="0.3"; sha256="0l67nfpm42ssnk0bl4jmq6bibz8hawgfgh2s14s5c8mnimv6mpjs"; depends=[yaml]; };
   configr = derive2 { name="configr"; version="0.3.3"; sha256="08fa04sjh2k6mbv998bp6cd7rh47j0ic3bcqdhr7zqlbd1g670x2"; depends=[glue ini jsonlite RcppTOML stringr yaml]; };
   confinterpret = derive2 { name="confinterpret"; version="1.0.0"; sha256="0qldaqpx7kpk71zfwv465jrscwzc9w3xfv52i4h01k9aw3q6m8ja"; depends=[]; };
-  conflicted = derive2 { name="conflicted"; version="0.1.0"; sha256="0dai0dvb3sbnjspg5wdwm4j5d11xkmrvpjjxpzb7s70d8wp4c72h"; depends=[rlang]; };
+  conflicted = derive2 { name="conflicted"; version="1.0.1"; sha256="0hj9dvyi59y917cac1d3g1bgaghs40nr71z3y2msr29q01d1sqkp"; depends=[memoise rlang]; };
   conformalClassification = derive2 { name="conformalClassification"; version="1.0.0"; sha256="03v6xbgipb97byarqj0d38z9yb2g54mkkw343jxmi2j058z26yw7"; depends=[doParallel foreach mlbench randomForest]; };
   confreq = derive2 { name="confreq"; version="1.5.1"; sha256="0gy6d1kffb1w86ifldswb9krxyc2p646g9yjlfm1h243qlp52sfa"; depends=[gmp]; };
   congressbr = derive2 { name="congressbr"; version="0.1.3"; sha256="1c29nqnhiyr9y2hs5lwpqa7c54qcqfr74l5mzh13dlccz3zsm2p1"; depends=[dplyr httr lubridate magrittr pscl purrr stringi stringr tibble tidyr xml2]; };
   conicfit = derive2 { name="conicfit"; version="1.0.4"; sha256="1d704xgiyqmbwfxnsmhqg885x10q8yqxmrk4khqpg3lh696bw97d"; depends=[geigen pracma]; };
   conics = derive2 { name="conics"; version="0.3"; sha256="06p6dj5dkkcy7hg1aa7spi9py45296dk0m6n8s2n3bzh3aal5nzq"; depends=[]; };
-  conjoint = derive2 { name="conjoint"; version="1.39"; sha256="0f8fwf419js9c292i3ac89rlrwxs2idhwxml1qd8xd2ggwfh6w5m"; depends=[AlgDesign clusterSim]; };
+  conjoint = derive2 { name="conjoint"; version="1.41"; sha256="1iq3226a6fn1gddmh2nxlzvjcvbj7502r9520g9d4xdmk8smfx33"; depends=[AlgDesign broom cluster fpc ggfortify ggplot2]; };
   conover_test = derive2 { name="conover.test"; version="1.1.5"; sha256="0f1p10klidk1xic1wd48j9rjh2fb3z6pfjx4y021lglx1w3av68k"; depends=[]; };
   constants = derive2 { name="constants"; version="0.0.2"; sha256="1j9d52riwx7v1ppfdw0x517j7xh92qgskd4mj5yk9qa233brcwyy"; depends=[]; };
   constellation = derive2 { name="constellation"; version="0.2.0"; sha256="1d49rnyf2z3bvx158nsmgmb0x7xcgxl9f8y98pwg5wlqck7af99q"; depends=[data_table]; };
@@ -5310,14 +5541,14 @@ in with self; {
   controlTest = derive2 { name="controlTest"; version="1.1.0"; sha256="19r8nvi35ldzgayifskjj706fv76hv6sj68yvggybp27rgyqbjfl"; depends=[survival]; };
   convertGraph = derive2 { name="convertGraph"; version="0.1"; sha256="1jsrygj6ydzc0nzyzaq95j4blqavj7dqz182vgm1ckv8an3if0jx"; depends=[]; };
   convertr = derive2 { name="convertr"; version="0.1"; sha256="1y9aq5in2qv1323amblmq3g22flpqvpkgkrw12kahg56mqf2b3iq"; depends=[DT miniUI rstudioapi shiny]; };
-  convevol = derive2 { name="convevol"; version="1.1"; sha256="1d9h2vjzfmnbm4aprbvhndgjh85zp3j1hssm9082nw7zb9ycxs1s"; depends=[ape cluster geiger MASS phytools]; };
+  convevol = derive2 { name="convevol"; version="1.2"; sha256="106x3qj5m8flcq4ixrvh0fv0kkcc7595ym4bg9dxjhdx4v0zhnbg"; depends=[ape cluster geiger MASS phytools]; };
   convexjlr = derive2 { name="convexjlr"; version="0.7.0"; sha256="1dxvz5jnflswqh7iqc4fw7gbp8s6qn7rfy2b5qx4jklrvfj696yj"; depends=[JuliaCall magrittr XRJulia]; };
   convey = derive2 { name="convey"; version="0.2.1"; sha256="1fcfzcpiy35xr2i81q002h07zf8gvbv1m5is7j475bi13666ynzh"; depends=[survey]; };
   convoSPAT = derive2 { name="convoSPAT"; version="1.2.4"; sha256="0by1z2z7gzycwrll1agkqnpn5h5cjr6b62gpwy11wl4lh48p4213"; depends=[ellipse fields geoR MASS plotrix StatMatch]; };
   cooccur = derive2 { name="cooccur"; version="1.3"; sha256="1wlaghhi4f3v8kzwhcgq3c6as7v3zlpkzhb232qz1amr7f0058kv"; depends=[ggplot2 gmp reshape2]; };
   cooccurNet = derive2 { name="cooccurNet"; version="0.1.6"; sha256="1vqfmvjrxxn977jrry47wn4lag4yi4bkyxwlis3n1ly39kkmyh2j"; depends=[bigmemory doParallel foreach igraph knitr Matrix pryr seqinr]; };
   coop = derive2 { name="coop"; version="0.6-1"; sha256="1hr78w7qlslpwnrz9mk6w4p5qa8sxhkzans5givy5hf9qkykn0dp"; depends=[]; };
-  coopProductGame = derive2 { name="coopProductGame"; version="1.0"; sha256="0vzx9f6za2zms9sda8p19gcmp4g6y87p91ydybjv8lz9na8hl3ix"; depends=[dplyr GameTheory ggplot2 gtools kappalab lpSolveAPI]; };
+  coopProductGame = derive2 { name="coopProductGame"; version="2.0"; sha256="1348pgqfvvysdixsjibgkvwjsmqasnlmwf9kyr39lw8jb81z25h0"; depends=[dplyr GameTheory ggplot2 gtools kappalab lpSolveAPI]; };
   cooptrees = derive2 { name="cooptrees"; version="1.0"; sha256="0izvwna1jsqik3v5fz1r4c86irvma42clw0p4rdvwswv5pk698i1"; depends=[gtools igraph optrees]; };
   copBasic = derive2 { name="copBasic"; version="2.1.0"; sha256="16iax25jzm9613i2ml5d4xjknhycallrbcxhrsrsp8znlclbglqs"; depends=[lmomco randtoolbox]; };
   copCAR = derive2 { name="copCAR"; version="2.0-2"; sha256="032gphv64v2mmy63q86qgpa31i36ix6fkjsdxmzgqyxcyzgb0jcy"; depends=[mcmcse numDeriv Rcpp RcppArmadillo spam]; };
@@ -5326,7 +5557,7 @@ in with self; {
   coprimary = derive2 { name="coprimary"; version="1.0"; sha256="0pjln9p5lzv6wl5xrz0kb90hnjlnp7ch2kvh054nxdbmlxv5akc3"; depends=[digest gsDesign plyr proto]; };
   copula = derive2 { name="copula"; version="0.999-18"; sha256="1xdjnp8zgla2hixyp524nvgbji0jcrmqc4j99hr8xp9365xb6z86"; depends=[ADGofTest colorspace gsl lattice Matrix mvtnorm numDeriv pcaPP pspline stabledist]; };
   copulaData = derive2 { name="copulaData"; version="0.0-1"; sha256="1s917g8wasxndg1xq4b4fjaq29nyzzigpflgqcy4rxdb7r54dl0z"; depends=[]; };
-  copulaedas = derive2 { name="copulaedas"; version="1.4.2"; sha256="09w6b1m1lnlnsx0qp2mzlp0z9rxzz90qs9jqzwwjl56lzdad3vpr"; depends=[copula mvtnorm truncnorm vines]; };
+  copulaedas = derive2 { name="copulaedas"; version="1.4.3"; sha256="01wp8jnz7kndknj7lh9ia7mm41k1vbaksalyy9v19bb77yhgzmba"; depends=[copula mvtnorm truncnorm vines]; };
   corHMM = derive2 { name="corHMM"; version="1.22"; sha256="03di9250hjn5fiwn47f0pr4zprmsza4if3xpmy3j1czahc8zlqnj"; depends=[ape corpcor expm GenSA nloptr nnet numDeriv phangorn Rmpfr]; };
   corTest = derive2 { name="corTest"; version="0.9.6"; sha256="1ccb38jyl2nyff2m71pba7vs13nl59zzpdnc7k68333dd8p7zswa"; depends=[MASS]; };
   corTools = derive2 { name="corTools"; version="1.0"; sha256="0arvqk2xp19ap73zmdk0kb1fycb3v2mf65b4bhanvcqwr4kg4vdk"; depends=[]; };
@@ -5341,7 +5572,7 @@ in with self; {
   corkscrew = derive2 { name="corkscrew"; version="1.1"; sha256="1nb81r4lsrajcj3xz3f7p6xznnb38yg3rnnh44rd3kabca4d8r1s"; depends=[ggplot2 gplots igraph RColorBrewer]; };
   corlink = derive2 { name="corlink"; version="1.0.0"; sha256="06n9pcvbn8y9gy0mn9c0sw05424ss8smpaw3ly6a785cmj3d9b6m"; depends=[]; };
   corpcor = derive2 { name="corpcor"; version="1.6.9"; sha256="1hi3i9d3841snppq1ks5pd8cliq1b4rm4dpsczmfqvwksg8snkrf"; depends=[]; };
-  corpora = derive2 { name="corpora"; version="0.4-3"; sha256="0zh8mabfy9yqgx7asi4yqv4c0kj59yvyxxaxjgdjy5kkr17zd4g4"; depends=[]; };
+  corpora = derive2 { name="corpora"; version="0.5"; sha256="0b4yw37msx9h8hf5mjs4h10gdmc1qc2gv5bzyj1r90n4gcli042d"; depends=[]; };
   corpus = derive2 { name="corpus"; version="0.10.0"; sha256="0c984rsnbai2qrm2s10lkdfgx31m0ax46zhl74bns2bxfmagcn3l"; depends=[utf8]; };
   corpustools = derive2 { name="corpustools"; version="0.3.3"; sha256="1hgcwnjhqfyylvqcy2j5f2k6chwyybnx38vzzvq62s6qf6p9p7by"; depends=[data_table Matrix memoise plyr R6 Rcpp SnowballC stringi udpipe wordcloud]; };
   corr2D = derive2 { name="corr2D"; version="0.2.0"; sha256="02z9k0j6j8jyjfgff55amkzsa5w0xbr9nqm1247qylsh8sl2rqcz"; depends=[colorspace doParallel fields foreach mmand rgl]; };
@@ -5349,20 +5580,21 @@ in with self; {
   correctedAUC = derive2 { name="correctedAUC"; version="0.0.3"; sha256="0c2kq7asq5mp48p8niqb84wnw4q2q2985wxbrywrhsszm9p3xspb"; depends=[ICC mnormt]; };
   corregp = derive2 { name="corregp"; version="2.0.2"; sha256="1v048dibn2x3y5mi2damcsr9i5kdig5n53g5j9gf31lqkzzjmnh3"; depends=[data_table diagram ellipse gplots rgl]; };
   correlbinom = derive2 { name="correlbinom"; version="0.0.1"; sha256="1ix3ccxzr7vqblbda5awsva3h95b69v7kc6adz622bbi8r36xxcq"; depends=[Rmpfr]; };
-  corrgram = derive2 { name="corrgram"; version="1.12"; sha256="1z0h2mkf4805w3wnhy31cf1gm9miliapxchgc4ksg3kx2799gv91"; depends=[seriation]; };
+  corrgram = derive2 { name="corrgram"; version="1.13"; sha256="1g5159vihsz5a2cfmg4g4i1lildn2x2wzck5sd0vml5810rxjpma"; depends=[seriation]; };
   corrplot = derive2 { name="corrplot"; version="0.84"; sha256="1k03qd8db7pwg1v318xapx5mpiypiz2n07qr19c4b45diri5xkhd"; depends=[]; };
-  corrr = derive2 { name="corrr"; version="0.2.1"; sha256="1d04nk92fjmk4kc5zipjqjhhmb1w97kid7l2jz5a8pkwiccn5byc"; depends=[dplyr ggplot2 ggrepel lazyeval magrittr purrr seriation tibble tidyr]; };
+  corrr = derive2 { name="corrr"; version="0.3.0"; sha256="1l5157m4k5zvxnkgndvkxc0ghcsgxvm5jr6hpbpdc6s1nnz7s027"; depends=[dplyr ggplot2 ggrepel lazyeval magrittr purrr rlang seriation tibble tidyr]; };
   corrsieve = derive2 { name="corrsieve"; version="1.6-8"; sha256="0ak3j9khcwv5rxbicck2sr260wpmd3xj254y7pdavx2fk0b72yxs"; depends=[]; };
   corset = derive2 { name="corset"; version="0.1-4"; sha256="0ladyqvkys4cldvbhkii9jwn1k5p1ym2g5bgdlz1hq1sv30ixn2f"; depends=[]; };
   cosa = derive2 { name="cosa"; version="1.2.0"; sha256="1g2n9l79bi6pr5m9f4c0byw2ls9nhykkaaivssxbx4m6qpqlqg54"; depends=[nloptr]; };
   cosinor = derive2 { name="cosinor"; version="1.1"; sha256="02nnqg51vq48lzk667cyarnmhcf5mifnsdij7dlgqvz2k4fdq4pl"; depends=[ggplot2 shiny]; };
-  cosinor2 = derive2 { name="cosinor2"; version="0.1.0"; sha256="0pxkkp8dxhzqp2v3pfzigh1ka7ardf168k5p41z289xgar9p33g0"; depends=[cosinor ggplot2 Hmisc matrixStats]; };
+  cosinor2 = derive2 { name="cosinor2"; version="0.2.1"; sha256="1pp0z86fflqkkllfrzx3vj98kzxjwnawr4a2d8z5q6zhq6v5qrvf"; depends=[cosinor cowplot ggplot2 Hmisc magrittr matrixStats purrr scales stringr]; };
   cosmoFns = derive2 { name="cosmoFns"; version="1.0-1"; sha256="0a6xhbgxxnymlvicg99yhgny2lscxcbmvqmy17kxmahdi797dsg6"; depends=[]; };
   cosso = derive2 { name="cosso"; version="2.1-1"; sha256="1wyq27qak0kz4bbzynm24r5ksvb6ddd43h2ykh6m935xck16blyb"; depends=[glmnet quadprog Rglpk]; };
   costat = derive2 { name="costat"; version="2.4"; sha256="0c47bklqjgjmdglw3mi9lvygwjr5w6i1zv91ll3vpnl5dnay0692"; depends=[wavethresh]; };
   cotrend = derive2 { name="cotrend"; version="1.0.1"; sha256="14yzfq5a3wi26gn45mp2zm2yn6gic90csk9by66m08fgpzznz4dq"; depends=[xts]; };
   couchDB = derive2 { name="couchDB"; version="1.4.1"; sha256="1n99amvnsjp88y091603hjsvp243c5i6dbrsvdjfmzgj5dsrv70m"; depends=[bitops httr RCurl rjson]; };
-  countrycode = derive2 { name="countrycode"; version="1.00.0"; sha256="1b2ijbf74bxvi01f53lbb2b9jya2rlyazvzacxpj79y1dbs600s6"; depends=[]; };
+  countgmifs = derive2 { name="countgmifs"; version="0.0.1"; sha256="19d8xr7ipqp16w46c3mrg15jfcvpj7n4pds8zw6mgw4g81bcxamf"; depends=[MASS]; };
+  countrycode = derive2 { name="countrycode"; version="1.1.0"; sha256="1pmv2jxr1ydgv8r5n20s5z80hdmzgvhm4cxdqhbkf7nfyipwl8xl"; depends=[]; };
   countyfloods = derive2 { name="countyfloods"; version="0.1.0"; sha256="0ld8p8dfk9khvwffbn8sad0j3an25s7cvbi6jxljgx4zc6ldh699"; depends=[dataRetrieval dplyr ggplot2 lubridate maps plyr R_utils tidyr]; };
   countytimezones = derive2 { name="countytimezones"; version="1.0.0"; sha256="0sk22fmz9d3wvlfvjl1xdavvl04q1ywy8ww2gi5am3yiizkf0v9w"; depends=[dplyr lubridate]; };
   countyweather = derive2 { name="countyweather"; version="0.1.0"; sha256="0q56bnh9x6jyj1sdd1q4yv2n774mbv268pgp285bjybgqm2pyisz"; depends=[dplyr geosphere ggmap ggplot2 lubridate purrr raster rnoaa sp stringi tibble tidyr tigris]; };
@@ -5370,18 +5602,18 @@ in with self; {
   covLCA = derive2 { name="covLCA"; version="1.0"; sha256="15jsjrlaws1cqyrwvh4lzbhxkb11jmgpmddg98nfrzmjpczn2iw3"; depends=[Matrix mlogit poLCA]; };
   covRobust = derive2 { name="covRobust"; version="1.1-3"; sha256="0zcfala4l0j4w0sx5hlw40vxiypans3d7pgkxy25nj0d2m1jkvba"; depends=[]; };
   covTest = derive2 { name="covTest"; version="1.02"; sha256="0p4di8bdjghsq5jd678dprlhiwnxr5piqlx2z7hi2bjjpvvl5657"; depends=[glmnet glmpath lars MASS]; };
-  covTestR = derive2 { name="covTestR"; version="0.1.3"; sha256="13sjnc3yrh2hzdcnnh6sfzl8gqilarg79n0sjr8vqyvclmz686k0"; depends=[dplyr lazyeval Rcpp RcppArmadillo]; };
-  covafillr = derive2 { name="covafillr"; version="0.4.2"; sha256="00790rgpdxxwc48cw0w5savvmvi8ljmyrh6w3f8qzx6pq1s982gm"; depends=[ggplot2 RcppEigen]; };
-  covatest = derive2 { name="covatest"; version="1.0.0"; sha256="0g4wfwxngvcssi2bmmb2q5fv909z9qm4wfc8gcldz7fckbsc0k10"; depends=[gstat matrixcalc sp spacetime]; };
+  covTestR = derive2 { name="covTestR"; version="0.1.4"; sha256="0j9kay8lwkhpdyg0fbfars1m58v0i58v1v5sm7m72s7kz8qh2yfs"; depends=[purrr Rcpp RcppArmadillo rlang]; };
+  covafillr = derive2 { name="covafillr"; version="0.4.3"; sha256="0mqq4hm3nhzrvdai9blb0ycgm6j5klfd8y4ib5pl99plffs6r7pl"; depends=[RcppEigen]; };
+  covatest = derive2 { name="covatest"; version="1.0.1"; sha256="01dn2jbfiy7fwlm6zg44cvb2475kaa4l8snl1xara3qp0xiikhvr"; depends=[gstat matrixcalc sp spacetime]; };
   covequal = derive2 { name="covequal"; version="0.1.0"; sha256="1qj6djqf1rnjmnaz1nryj9dc104082w258dzjjp5q18gg1ck8v0c"; depends=[corpcor RMTstat]; };
   covfefe = derive2 { name="covfefe"; version="0.1.0"; sha256="178qc77y4bn04qad3g70wr8y4v0ggyg807w67m8wvhbcxqr8yq7c"; depends=[tokenizers]; };
-  covr = derive2 { name="covr"; version="3.1.0"; sha256="0ml7hpnwn0b4rgk0qx0pchz1m5b57issbvhl708lnb0bplvf00f7"; depends=[crayon digest httr jsonlite rex withr]; };
+  covr = derive2 { name="covr"; version="3.2.1"; sha256="187hvqp7mvxy3hl00fgw56sm93yrz81fwixf652arr0ih2jdm47a"; depends=[crayon digest httr jsonlite rex withr]; };
   covreg = derive2 { name="covreg"; version="1.0"; sha256="0v19yhknklmgl58zhvg4szznb374cdh65i7s8pcj2nwrarycwzaq"; depends=[]; };
   covsep = derive2 { name="covsep"; version="1.1.0"; sha256="19dvwhl85yx9ddwxvnq5sdd534s6llcw61gckrav48hq49x1bqld"; depends=[mvtnorm]; };
   cowbell = derive2 { name="cowbell"; version="0.1.0"; sha256="1zz0g30zvqfk5lh09y90iq3s7x2wwbs852i3d56mfp926gxdxc2y"; depends=[ggplot2 misc3d rgl]; };
-  cowplot = derive2 { name="cowplot"; version="0.9.2"; sha256="13yjw7yv7imyqiawqqp304hkp6x36iv6rf6gn03dwzwkj9zwx4lb"; depends=[ggplot2 gtable plyr scales]; };
-  cowsay = derive2 { name="cowsay"; version="0.6.0"; sha256="15kiiqbh8bqdifbjh6ab9r595j2a4zyk4mgmy1w39sja1g95nlvi"; depends=[fortunes rmsfact]; };
-  coxed = derive2 { name="coxed"; version="0.1.1"; sha256="1fk9vcrad8p2xdm1q7wcrd2fk9b59cfs3lvfxi8arkmmbz7pxrmq"; depends=[dplyr ggplot2 gridExtra mgcv PermAlgo rms survival tidyr]; };
+  cowplot = derive2 { name="cowplot"; version="0.9.3"; sha256="1jrx1h0blkk577y4cvnjk7xccn7qmjiv2bnpgqlsjvjhsxglf41y"; depends=[ggplot2 gtable plyr scales]; };
+  cowsay = derive2 { name="cowsay"; version="0.7.0"; sha256="1f5hc1sj79yd3l2c6vrcj6xx2hdfxb16c3d2sgr7yps8j5fyrb9h"; depends=[crayon fortunes rmsfact]; };
+  coxed = derive2 { name="coxed"; version="0.2.0"; sha256="0idr6ic8nsw6f210swvpfzbaf05blg4x6kh6mb7q773qirmwi0rs"; depends=[dplyr ggplot2 gridExtra mgcv PermAlgo rms survival tidyr]; };
   coxinterval = derive2 { name="coxinterval"; version="1.2"; sha256="0vb7vmzbb2dsihx04jbp2yvzcr033g435mywmwimqhfqdrmjx3fi"; depends=[Matrix survival timereg]; };
   coxme = derive2 { name="coxme"; version="2.2-10"; sha256="12p41qc3ryxdcw2zljgvw2gk1wl1pj7h61naqbyc1h0l3dqy8dg2"; depends=[bdsmatrix Matrix nlme survival]; };
   coxphMIC = derive2 { name="coxphMIC"; version="0.1.0"; sha256="0lmma5wzcczr762xqa4yamvwvyviqxk8gdrps3sydg3n14hckp6d"; depends=[numDeriv survival]; };
@@ -5389,6 +5621,7 @@ in with self; {
   coxphf = derive2 { name="coxphf"; version="1.13"; sha256="16bman8xv5xx7gg8s54sj3hc4isqxk4h3q93h4q3h3j0bdvww2yy"; depends=[survival]; };
   coxphw = derive2 { name="coxphw"; version="4.0.1"; sha256="116dp6zispa8k7y6jrn4v9ipf0jqdhj68w9qqc2qwcapawvrd0nh"; depends=[survival]; };
   coxrobust = derive2 { name="coxrobust"; version="1.0"; sha256="08hp0fz5gfxgs3ipglj6qfr6v63kzxkrzg650bmzabq8dvrxd97q"; depends=[survival]; };
+  coxrt = derive2 { name="coxrt"; version="1.0.0"; sha256="1nyc4qpgxyji314w372rg7dhiq6bmzfjbgi035m350s81fp6y8br"; depends=[BB ggplot2 gss inline Rcpp RcppArmadillo survival]; };
   coxsei = derive2 { name="coxsei"; version="0.1"; sha256="1agr0gmyy1f2x6yspj04skgpi1drpbc1fcbwhhhjsz1j6c64xagy"; depends=[]; };
   cp4p = derive2 { name="cp4p"; version="0.3.5"; sha256="16pkl0brm415v153ln41nyy13fsp4i0jy8349lsffkv5mvp7vklc"; depends=[limma MESS multtest qvalue]; };
   cpa = derive2 { name="cpa"; version="1.0"; sha256="14kcxayw4cdbjfa6bvfzqp8flwc0sr3hmh2dnr1dfax0hnccd71m"; depends=[]; };
@@ -5412,35 +5645,40 @@ in with self; {
   cranlogs = derive2 { name="cranlogs"; version="2.1.0"; sha256="1w1nbifjb9l106fk97zy0w73x73bw5azq89l3c1b8r2fz8aljkkc"; depends=[httr jsonlite]; };
   cranly = derive2 { name="cranly"; version="0.2"; sha256="0h6yfj805kbprgj28x43iz6lcjsv39vxdf33j9gg2gnmgr5zja67"; depends=[colorspace countrycode ggplot2 igraph magrittr stringr visNetwork]; };
   crantastic = derive2 { name="crantastic"; version="0.1"; sha256="0y2w9g100llnyw2qwjrib17k2r2q9yws77mf6999c93r8ygzn4f5"; depends=[]; };
-  crawl = derive2 { name="crawl"; version="2.1.1"; sha256="0dr9z8y8rvc3wn1gjb6mh5wmszng9j1r2a9ks6p5am8ghf754sps"; depends=[dplyr gdistance mvtnorm raster Rcpp RcppArmadillo shiny sp]; };
+  crawl = derive2 { name="crawl"; version="2.2.1"; sha256="18mr7vp72jj5msj9mbq45jy3f6qhn45azsmkq07i2d30gwdj0c3a"; depends=[dplyr gdistance lubridate magrittr mvtnorm purrr raster Rcpp RcppArmadillo rmapshaper sf shiny sp tibble]; };
   crayon = derive2 { name="crayon"; version="1.3.4"; sha256="0s7s6vc3ww8pzanpjisym4jjvwcc5pi2qg8srx7jqlz9j3wrnvpw"; depends=[]; };
   crblocks = derive2 { name="crblocks"; version="0.9-1"; sha256="1m6yy6jb1dld7m9jaasms5ps8sn3v039jvlk8b0c08hmm7y0rm3z"; depends=[]; };
   crch = derive2 { name="crch"; version="1.0-1"; sha256="0h97vr9sy7hncjxv5v3y79pw2qqzpx6z6nqgx6k2ics1lf9misyb"; depends=[Formula ordinal sandwich scoringRules]; };
   creditr = derive2 { name="creditr"; version="0.6.1"; sha256="1dhjl99gjc97bdsdg29mq6xifivjn9kr0y7m2jzvrzb26x856z97"; depends=[devtools quantmod Rcpp RCurl XML xts zoo]; };
   credsubs = derive2 { name="credsubs"; version="1.0"; sha256="12bs1whk23y41hxa976j30d31x81rmxapz9ll5y2hi5c1h4fypn4"; depends=[]; };
   credule = derive2 { name="credule"; version="0.1.3"; sha256="1vciqkxkf93z067plipvhbks9k9sfqink5rhifzbnwc2c5gxp5mx"; depends=[]; };
+  cregg = derive2 { name="cregg"; version="0.3.0"; sha256="08dhn4i5i27zw3ayqp7lkw5z8dzckv8fhflpvz0mphax34pm3z72"; depends=[ggplot2 ggstance lmtest sandwich scales survey]; };
+  crfsuite = derive2 { name="crfsuite"; version="0.2"; sha256="10d7gahqqc6g6l99n6g5r49hlngdl3k9jz9j2c4x9hx1r8f8gql6"; depends=[data_table Rcpp]; };
   cricketr = derive2 { name="cricketr"; version="0.0.15"; sha256="0jf9a8kfhzydmspmgh2mxb18q4adbjm3jiz3brxpl42d64agq7qj"; depends=[dplyr forecast ggplot2 lubridate plotrix scatterplot3d XML]; };
   crimCV = derive2 { name="crimCV"; version="0.9.6"; sha256="14ckk88i7jk8a7kl51d7qfdis44jng6zz9zd72cdp80a57dvrvzq"; depends=[]; };
+  crimedata = derive2 { name="crimedata"; version="0.1.0"; sha256="006wz4nvfq10dppkg8kqp2bmllcc7zpwdqkp3nqwm4qgw7pllyvz"; depends=[digest dplyr httr magrittr purrr readr stringr tibble]; };
   crimelinkage = derive2 { name="crimelinkage"; version="0.0.4"; sha256="1zzk50kyccvnp51vzp28c9yi23hsp25arrgdn88lwfwa0m43rlar"; depends=[geosphere igraph]; };
   crisp = derive2 { name="crisp"; version="1.0.0"; sha256="1gs8jnd9y9pd55w6kwv9mvmg3wd8hjiw3lwx7k242pxccsxklfxq"; depends=[MASS Matrix]; };
   crmPack = derive2 { name="crmPack"; version="0.2.7"; sha256="1d0ydllcbykwip9dw3arvn6lv4h88n5nkm3ms122gfrf44f6h2c0"; depends=[GenSA ggplot2 gridExtra MASS mvtnorm rjags]; };
-  crminer = derive2 { name="crminer"; version="0.1.4"; sha256="1vnl01q5sw13g6qhvn61w9i40zpg9cszisgi0h8d6q6rr23iws9w"; depends=[crul hoardr jsonlite pdftools xml2]; };
+  crminer = derive2 { name="crminer"; version="0.2.0"; sha256="1rlh7bxk8bry2v9fnqzy0ph62dda1pzifksr7v4pmdyhji9mjw33"; depends=[crul hoardr jsonlite pdftools xml2]; };
   crmn = derive2 { name="crmn"; version="0.0.20"; sha256="1kl1k1s2gm63f9768cg8w4j6y1gq4hws3i7hdfhj7k9015s0a25p"; depends=[Biobase pcaMethods]; };
   crn = derive2 { name="crn"; version="1.1"; sha256="1fw0cwx478bs6hxidisykz444jj5g136zld1i8cv859lf44fvx2d"; depends=[chron RCurl]; };
-  crochet = derive2 { name="crochet"; version="2.0.1"; sha256="1il29hnnx3kwjvsnirvm5vxdd04x94qn4526411cw0syyqqlbnp8"; depends=[]; };
+  crochet = derive2 { name="crochet"; version="2.1.0"; sha256="0bfhgkbyrm836wjshlv1gxkc7m84sij6i3zrg95q4fmqzspwqnq0"; depends=[]; };
+  cromwellDashboard = derive2 { name="cromwellDashboard"; version="0.5.1"; sha256="0d57c1wdd1ds9fr7p256la63qbv8mirljgrvl1k8fp5gcnkps5wb"; depends=[dplyr DT httr shiny shinydashboard stringr]; };
   cronR = derive2 { name="cronR"; version="0.4.0"; sha256="0ydlwhlzb57vbr8ya6hdsw2mhsjkb01jspn0jw081anrxfy5m2jw"; depends=[digest]; };
   crop = derive2 { name="crop"; version="0.0-2"; sha256="1yjpk7584wrz9hjqs21irjnrlnahjg8lajra9yfdp6r927iimg1l"; depends=[]; };
   cropdatape = derive2 { name="cropdatape"; version="1.0.0"; sha256="19bn0apx4p8hnz388zg7sq59qv89vv8k5php317kcv7ai2k2gh34"; depends=[]; };
   crossReg = derive2 { name="crossReg"; version="1.0"; sha256="1866jhfnksv9rk89vw7w4gaxi76bxfjvqxx7cfa8nlrcsmaqd7rf"; depends=[]; };
   crossdes = derive2 { name="crossdes"; version="1.1-1"; sha256="1d7lv3ibq1rwxx8kc3ia6l9dbz2dxdd5pnf2vhhjmwm448iamcfd"; depends=[AlgDesign gtools]; };
   crossmatch = derive2 { name="crossmatch"; version="1.3-1"; sha256="082lrv2129mfhwlh99z3g8id3a29s8854skl152bl3ig8pk2gbjz"; depends=[nbpMatching survival]; };
+  crossrun = derive2 { name="crossrun"; version="0.1.0"; sha256="0br57nraqhs5f1cpidc8kd31izm82wvhiw9pxcdj9v51l9vifbmx"; depends=[Rmpfr]; };
   crosstalk = derive2 { name="crosstalk"; version="1.0.0"; sha256="0lfa89vhrzi7a1rghmygcjr8gzddw35sinb3jx6g49mc9jias7mk"; depends=[ggplot2 htmltools jsonlite lazyeval R6 shiny]; };
   crossval = derive2 { name="crossval"; version="1.0.3"; sha256="0acpcisg6pkxblyc4j9hiri58h1rn7ay43p5ib5ia8a4a8bnfa4p"; depends=[]; };
   crosswalkr = derive2 { name="crosswalkr"; version="0.1.1"; sha256="0yk5yxxsd1alfbfjg5bzjc5b07jfj5s551bzrv3dg57hxnqw9b2z"; depends=[dplyr haven labelled readr readxl tibble]; };
   crossword_r = derive2 { name="crossword.r"; version="0.3.5"; sha256="1h6r5rrmla3jsdfnkxsv4drvp3nrkqkygqv9ak0pn37zlbms99z9"; depends=[dplyr jsonlite magrittr R6 r6extended stringr]; };
   crp_CSFP = derive2 { name="crp.CSFP"; version="2.0.2"; sha256="0gazmhf5bv994x441m2xm0w18h9lw3y68qzdf6gmyqimj4wjqjgf"; depends=[MASS]; };
   crplyr = derive2 { name="crplyr"; version="0.2.0"; sha256="14j0cn3ci6vbmimcinzp25ym0h264405jn8gw7w0gk3rcamgh50s"; depends=[crunch dplyr lazyeval purrr rlang stringr tibble]; };
-  crqa = derive2 { name="crqa"; version="1.0.7"; sha256="008dmrgsajm73r3fl3lqsd4pgkdacpx6m48xg61yc02xciv7ad2b"; depends=[fields Matrix plot3D pracma tseriesChaos]; };
+  crqa = derive2 { name="crqa"; version="1.0.9"; sha256="1k6jgkmgbjab78dynng1hlxdbnqrpwmiiw54rgyfhx6v3lcir75d"; depends=[fields Matrix plot3D pracma tseriesChaos]; };
   crqanlp = derive2 { name="crqanlp"; version="0.3"; sha256="1ndd5k44w232x6k564r84lyahljgcnldfwgih3iiar3il94drbdg"; depends=[corpus crqa gutenbergr RCurl tm]; };
   crrSC = derive2 { name="crrSC"; version="1.1"; sha256="171cw56q2yv1vb4qd0va75i2q89jcw1126q8pcbv0235g7p2a86z"; depends=[survival]; };
   crrp = derive2 { name="crrp"; version="1.0"; sha256="1fq54jr6avrli91a4z1hp5img4kghyw1yvjr5xyccsanf9i35x8r"; depends=[cmprsk Matrix survival]; };
@@ -5450,11 +5688,11 @@ in with self; {
   crsnls = derive2 { name="crsnls"; version="0.2"; sha256="0rv0xrdl9ix6bhaf554gma8zf923w47f8j1dkbs8g6xjqjr1c40a"; depends=[]; };
   crsra = derive2 { name="crsra"; version="0.2.3"; sha256="1rkqm88zmvp9gw442cby6qpvfw4pfw65wz0gyl2h37w87c3wwvrw"; depends=[digest dplyr knitr purrr rcorpora readr tibble tidytext]; };
   crtests = derive2 { name="crtests"; version="0.2.1"; sha256="0z8idz37dgwvi1q2vryldii7fn9yxd32gds77ml76jfplxbkikpd"; depends=[caret plyr stringr]; };
-  crul = derive2 { name="crul"; version="0.5.2"; sha256="0sfjv8jrb5x85b4dicp7789xxa0g6y89sfd96war84yidmh2a6z0"; depends=[curl httpcode mime R6 urltools]; };
-  crunch = derive2 { name="crunch"; version="1.23.0"; sha256="0mcq4qnhn3gadq2ssglvh5wid0a0clkxza3zikxrxwa69vjp7x3q"; depends=[crayon curl httpcache httr jsonlite]; };
+  crul = derive2 { name="crul"; version="0.6.0"; sha256="1vnir41mqah8ib9p2p4ij54bpv54baa1q9ad5j2a7hn59vwpjhh0"; depends=[curl httpcode mime R6 urltools]; };
+  crunch = derive2 { name="crunch"; version="1.24.0"; sha256="0jydmicc4c4vkf6r3krybbrdf96059nx6q611lyd2qj32irlr49j"; depends=[crayon curl httpcache httr jsonlite]; };
   crunchy = derive2 { name="crunchy"; version="0.2.0"; sha256="1q9mqpkg5ljb798922fmvjjp36kyjr1rrm6jf3s2fwjrhq186y3z"; depends=[crunch shiny]; };
-  cruts = derive2 { name="cruts"; version="0.4"; sha256="0flhlv9pabmj667azc7vjacmk4d512s34xlrip176s8cmswprzg1"; depends=[lubridate ncdf4 raster sp stringr]; };
-  crypto = derive2 { name="crypto"; version="1.0.2"; sha256="16k08kbn8lr3ycf61imc3fd0vdm2w1rzzn11c6vv7s8kfwvdcfdl"; depends=[curl doSNOW dplyr foreach jsonlite lubridate magrittr rvest tidyr xml2 xts yaml]; };
+  cruts = derive2 { name="cruts"; version="0.5"; sha256="08mklbmwgaq6cf3hd40mingplwjss5im30l5j6nmy7lijp15nq7k"; depends=[lubridate ncdf4 raster sp stringr]; };
+  crypto = derive2 { name="crypto"; version="1.0.3"; sha256="19d245sq8xhxmq252cjcymc86n6q6yq2b1liy2mm62agkyjxznrd"; depends=[curl doSNOW dplyr foreach jsonlite lubridate magrittr rvest tibble tidyr xml2 xts yaml]; };
   cryst = derive2 { name="cryst"; version="0.1.0"; sha256="04da19dy3mkngd3ma44cd8cdkb5acjy9lbhfipa9flp339j1pp57"; depends=[flux pracma]; };
   csSAM = derive2 { name="csSAM"; version="1.2.4"; sha256="1ms8w4v5m9cxs9amqyljc2hr1178cz6pbhmv7iiq9yj1ijnl4r1x"; depends=[]; };
   csabounds = derive2 { name="csabounds"; version="1.0.0"; sha256="15l7i15w5jk4h3148dlk8v2i4awns5vxvv6m59qcv0hzns6jhx9j"; depends=[BMisc ggplot2 pbapply progress qte]; };
@@ -5468,18 +5706,19 @@ in with self; {
   cstar = derive2 { name="cstar"; version="1.0"; sha256="1zws4cq5d37hqdxdk86g85p2wwihbqnkdsg48vx66sgffsf1fgxd"; depends=[]; };
   csv = derive2 { name="csv"; version="0.5.2"; sha256="1gwib79fysmiwaw48ghsygyqgc00j5zwy7lfgcziw1kp6nxkdk19"; depends=[]; };
   csvread = derive2 { name="csvread"; version="1.2"; sha256="1zx43g4f4kr7jcmiplzjqk2nw1g5kmmfap85wk88phf6fp0w8l5p"; depends=[]; };
-  csvy = derive2 { name="csvy"; version="0.1.3"; sha256="0vszbxqa88sdsi73wng4y8zxhrvcksqa6qs3rbh50c2nll8r8kb3"; depends=[yaml]; };
+  csvy = derive2 { name="csvy"; version="0.3.0"; sha256="0id015szw1c63vd1h0515jsqdhyn32sxpxm89f3sb1qkgq3yynmy"; depends=[data_table jsonlite yaml]; };
   cthreshER = derive2 { name="cthreshER"; version="1.1.0"; sha256="18b66d08dq8pvnixmm4ir4r800b37z5yillaa88l317mdilbci9s"; depends=[Matrix]; };
-  ctl = derive2 { name="ctl"; version="1.0.0-0"; sha256="12hrrql9wz43s1d3sfyzlqzx7ajrl3hvf96776ik6icbm8by8h6j"; depends=[MASS qtl]; };
-  ctmcd = derive2 { name="ctmcd"; version="1.3.5"; sha256="0nsazcfa8bg5r2ki5wf4v6q2ws47wk97zr4a5h9jj0mp1900rz2l"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; };
+  ctl = derive2 { name="ctl"; version="1.0.0-2"; sha256="1gpb43zn411l476dby2g38qkcvh2fsdcvbkr9jb274l1154km1xm"; depends=[MASS qtl]; };
+  ctmcd = derive2 { name="ctmcd"; version="1.4.0"; sha256="1b4bf2j3gdzm417pimn9m365y7x11ddinq9mb5mixwsbf77dqagm"; depends=[coda expm numDeriv Rcpp RcppArmadillo]; };
   ctmcmove = derive2 { name="ctmcmove"; version="1.2.9"; sha256="1pxyxbbhfa8arqfb7qw10ya1b8hy9ylqbqqzys6d9dsixvdk98h0"; depends=[fda gdistance Matrix raster sp]; };
   ctmle = derive2 { name="ctmle"; version="0.1.1"; sha256="1k9nr2xbaqrbpp31vdcnmpwyazcw79k0r3gbcbinva4pgv2psp29"; depends=[glmnet SuperLearner tmle]; };
-  ctmm = derive2 { name="ctmm"; version="0.5.0"; sha256="1lz07gsly4acdwmv62l01g3rmmjwkiww8hsxlbx0cp0jmk63znn1"; depends=[data_table expm fasttime Gmedian manipulate MASS Matrix numDeriv pbivnorm pracma raster rgdal scales shape]; };
+  ctmm = derive2 { name="ctmm"; version="0.5.2"; sha256="1x8nzmhdby0nwm18l6b3y4x4b7pihfkpnhakykh23rfnr7d6ajj3"; depends=[data_table expm fasttime Gmedian manipulate MASS numDeriv pbivnorm pracma raster rgdal scales shape]; };
   ctqr = derive2 { name="ctqr"; version="1.0"; sha256="1q4icv8qicgwr664cbrmkh2x9xmlrc80yvz8gnaqh86248kn4yp3"; depends=[pch survival]; };
+  ctrlGene = derive2 { name="ctrlGene"; version="1.0.0"; sha256="0gz2js2n990sfwxwigp4dxqcf94f9bzcinyzjign5yvyr53fakvk"; depends=[psych]; };
   cts = derive2 { name="cts"; version="1.0-21"; sha256="0wagxqb8msjc8z33qp7sc92l53f56d9bzz9160bmgpjxlj6cnqcj"; depends=[]; };
   ctsem = derive2 { name="ctsem"; version="2.6.5"; sha256="0dk1q18sd4s5ynxq8sdhxc7p35qqc6z87d001pykbr0kzszyf9c2"; depends=[BH corrplot MASS Matrix mvtnorm OpenMx plyr Rcpp RcppEigen rstan rstantools shiny StanHeaders]; };
   ctv = derive2 { name="ctv"; version="0.8-5"; sha256="0kl6z8dbbjgm29q0c5xy6lihjgf5cdihrllm27x0zbcvy8lyl51p"; depends=[]; };
-  cubature = derive2 { name="cubature"; version="1.4"; sha256="1hd23b8v2kpqp5gr0va8p2q7j8w9rik6ks7zrr4b8mb2mwrakk74"; depends=[Rcpp]; };
+  cubature = derive2 { name="cubature"; version="1.4-1"; sha256="10jl5l3xnigiq95829ssq69xbim97k851187dghc30awszcx4clh"; depends=[Rcpp]; };
   cubfits = derive2 { name="cubfits"; version="0.1-3"; sha256="0i2iybm9vpyqnahzka66yms1namdd36bz1i1yjy74qsc1h995rga"; depends=[coda foreach]; };
   cubing = derive2 { name="cubing"; version="1.0-5"; sha256="1q23fplvklaaldicqic0zpnh301m08zb9k21l47zj47g9m9pj4bc"; depends=[rgl]; };
   cudaBayesreg = derive2 { name="cudaBayesreg"; version="0.3-16"; sha256="1xsamdsg4cq7l5r7czkg70j5gypf1dak3h353xfbz3rq0r0dni19"; depends=[cudaBayesregData oro_nifti]; };
@@ -5495,45 +5734,49 @@ in with self; {
   curvHDR = derive2 { name="curvHDR"; version="1.2-0"; sha256="185097ikqhmqqc4ha7l74inx5cmg1bhgw3cw40wk0ngc4wv4sfqi"; depends=[feature geometry hdrcde KernSmooth ks misc3d ptinpoly rgl]; };
   curvecomp = derive2 { name="curvecomp"; version="0.1.0"; sha256="0ykgbwnh32w61cjcg1nyqak42hx0jrsrpbra2wh3pgj9clg1qad2"; depends=[multcomp]; };
   cusp = derive2 { name="cusp"; version="2.3.3"; sha256="130m0is48bp11p5fpg17lwqwlavsa8fzfxjs0z62vl6lm006aahw"; depends=[]; };
+  customLayout = derive2 { name="customLayout"; version="0.2.0"; sha256="0mr5s6arjm97bdgr6r8w1d33spiwnqw4spbl7smivpw7h8asi94m"; depends=[flextable gridExtra officer RColorBrewer]; };
   customizedTraining = derive2 { name="customizedTraining"; version="1.1"; sha256="0rlfsnhmmcwx7iyjavj03v4kdfzxcqjggi8qpgmi6lkli3n0s6pg"; depends=[FNN glmnet]; };
   cutoffR = derive2 { name="cutoffR"; version="1.0"; sha256="1801jylmpp4msyf07rhg4153kky1zvi4v0kkjb9d51dc7zkhh531"; depends=[ggplot2 reshape2]; };
-  cutpointr = derive2 { name="cutpointr"; version="0.7.3"; sha256="09pcja8kp3sdsz2vp32s5vl7m5cz14rlbp9aa00y4qd21nyckyj9"; depends=[dplyr foreach ggplot2 gridExtra purrr Rcpp rlang tibble tidyr]; };
+  cutpointr = derive2 { name="cutpointr"; version="0.7.4"; sha256="0d9g0xrypfh382zpil16yh65bl3rlygj7vgzkqblwad8ladbd27s"; depends=[dplyr foreach ggplot2 gridExtra purrr Rcpp rlang tibble tidyr]; };
   cuttlefish_model = derive2 { name="cuttlefish.model"; version="1.0"; sha256="1rmkfyfd1323g2ymd5gi1aksp160cwy5ha5cjqh5r6fzd8hhqjxs"; depends=[]; };
   cvAUC = derive2 { name="cvAUC"; version="1.1.0"; sha256="13bk97l5nn97h85iz93zxazhr63n21nwyrpnl856as9qp59yvn64"; depends=[data_table ROCR]; };
   cvTools = derive2 { name="cvTools"; version="0.3.2"; sha256="0b7xb6dmhqbvz32zyfbdvm9zjyc59snic6wp1r21ina48hchn3sj"; depends=[lattice robustbase]; };
-  cvar = derive2 { name="cvar"; version="0.1-1"; sha256="0aqv42wbhdql1v0mxspr5ms2mwkk6yw0snzzjg5qg682m5f13ghn"; depends=[gbutils Rdpack]; };
+  cvar = derive2 { name="cvar"; version="0.3-0"; sha256="164k8b40w1npbq3r9i6n9m0hkia3wavsid88zyc63j56lxxk8zmm"; depends=[fGarch gbutils Rdpack]; };
   cvcrand = derive2 { name="cvcrand"; version="0.0.2"; sha256="1gclzn6qqjylxg3v263x5cfg1wjkqviqb3fzzb7w0ckpld2his0v"; depends=[tableone]; };
   cvequality = derive2 { name="cvequality"; version="0.1.3"; sha256="19mpf2vjj2hfgdr3mx5y1i0ldb0byvv2ii7lyanhc6c2a3mirs38"; depends=[]; };
   cvq2 = derive2 { name="cvq2"; version="1.2.0"; sha256="19k95xg2y3wd4mx3wvbrc1invybd446g13vsp3dv05nw2kx4f6w8"; depends=[]; };
   cvxbiclustr = derive2 { name="cvxbiclustr"; version="0.0.1"; sha256="00k75zy8v6qd5fg0h258i5z8ljjkfgkxz45cspysl1ap89d5n7df"; depends=[igraph Matrix]; };
   cvxclustr = derive2 { name="cvxclustr"; version="1.1.1"; sha256="0idmx4wgz4d0b1xzmlq5bsk2f2q38lpf9c117hg97xsfndzn7vqj"; depends=[igraph Matrix]; };
-  cwhmisc = derive2 { name="cwhmisc"; version="6.5"; sha256="1nakiyamg05r7xysac5b1y0ddq6s25v6ygsrb487b5jcv0d95g2n"; depends=[lattice]; };
+  cwhmisc = derive2 { name="cwhmisc"; version="6.6"; sha256="1pf365g4f51cfrhlff9mqw2ddvkps0abax17zcn3vw1ba2djalnp"; depends=[lattice]; };
   cwm = derive2 { name="cwm"; version="0.0.3"; sha256="1ln2l12whjhc2gx38hkf3xx26w5vz7m377kv67irh6rrywqqsyxn"; depends=[MASS matlab permute]; };
+  cxhull = derive2 { name="cxhull"; version="0.1.1"; sha256="0ihvgliwssf5jprb7f842vsck1d5x657c43pb6wi03y4wdz2r0s5"; depends=[]; };
   cxxfunplus = derive2 { name="cxxfunplus"; version="1.0"; sha256="0kyy5shgkn7wikjdqrxlbpfl3zkkv4v1p8a1vv0xkncwarjs4n8d"; depends=[inline]; };
   cycleRtools = derive2 { name="cycleRtools"; version="1.1.1"; sha256="1l7w2lm4s149ndd85v41pkdrdig6l3nmhl14bdx56aw8q57fxmb0"; depends=[Rcpp xml2]; };
   cyclestreets = derive2 { name="cyclestreets"; version="0.1.5"; sha256="1wvg43wrnh0lz2pkkrbidzdsrkypdl2r4ccs9jhdsj8ixm158dvf"; depends=[httr jsonlite magrittr sf stringr]; };
   cyclocomp = derive2 { name="cyclocomp"; version="1.1.0"; sha256="0gky3svk02wiajw7nfjh30684h3qxili4bvsab0m7b6cggw6bgyd"; depends=[callr crayon desc remotes withr]; };
   cycloids = derive2 { name="cycloids"; version="1.0"; sha256="00pdxny11mhfi8hf76bfyhd1d53557wcbl2bqwjzlpw5x3vdnsan"; depends=[]; };
-  cymruservices = derive2 { name="cymruservices"; version="0.2.0"; sha256="1pgk9llaz0glhgf3n60nq3xb8kp4jkk8paz4scxff3whyksxv4yn"; depends=[purrr stringr]; };
+  cymruservices = derive2 { name="cymruservices"; version="0.5.0"; sha256="1xhdvijybdy7312qdbp50881yix587pmym0hchnwb3h0vhjv553v"; depends=[memoise pingr stringi]; };
   cyphid = derive2 { name="cyphid"; version="1.1"; sha256="0ya9w8aw27n0mvvjvni4hxsr4xc8dd08pjxx7zkfl1ynfn5b08am"; depends=[fda]; };
   cystiSim = derive2 { name="cystiSim"; version="0.1.0"; sha256="0pz8jxi4lgcwzrb4dh8xn63xhpaga5rzg5hwqicwv8isc16iqizd"; depends=[ggplot2 knitr magrittr]; };
   cytoDiv = derive2 { name="cytoDiv"; version="0.5-3"; sha256="00c0gqgypywgbhavb15bvj6ijrk4b5zk86w85n9kwr4069b7jvwc"; depends=[GenKern plotrix]; };
-  cytometree = derive2 { name="cytometree"; version="1.1.1"; sha256="1v90dp2bk06iv7im6r3rgj442ajxyy0h05h1higrjyw6k2v78dmd"; depends=[ggplot2 igraph mclust Rcpp RcppArmadillo]; };
+  cytofan = derive2 { name="cytofan"; version="0.1.0"; sha256="0gqs98mnwiawnyfb9hs5nlin8d1fj64bszn4b40gs8ajyh36r9pp"; depends=[ggplot2 RColorBrewer]; };
+  cytometree = derive2 { name="cytometree"; version="1.2.0"; sha256="1919f9d7phgnf1z5srgjj4h4pgl9hrv9rx75rifj819zv2s9hfig"; depends=[cowplot ggplot2 igraph mclust RColorBrewer Rcpp RcppArmadillo robustbase]; };
   cytominer = derive2 { name="cytominer"; version="0.1.0"; sha256="1p988aw689kgpbglmzrnl30krnbynwk3dgjv7w3x2719hi481z2j"; depends=[caret doParallel dplyr foreach futile_logger magrittr purrr rlang tibble tidyr]; };
   d3Network = derive2 { name="d3Network"; version="0.5.2.1"; sha256="1gh979z9wksyxxxdzlfzibn0ysvf6h1ij7vwpd55fvbwr308syaw"; depends=[plyr rjson whisker]; };
   d3Tree = derive2 { name="d3Tree"; version="0.2.0"; sha256="0xjr36hdd00dy8s8z1a1s44dn2wg0nm6yqc1rri2l0dqrbh4nrbn"; depends=[dplyr htmlwidgets magrittr plyr stringr]; };
   d3heatmap = derive2 { name="d3heatmap"; version="0.6.1.2"; sha256="1ici8j0wzzklhmw94qlxm292qs562vc32wq8mnjsas2n1p35vkmk"; depends=[base64enc dendextend htmlwidgets png scales]; };
   d3plus = derive2 { name="d3plus"; version="0.1.0"; sha256="0kadz83pals03n0v3zqhmhf6visigk52yn58xckhb57fid4xzj5w"; depends=[htmlwidgets magrittr]; };
-  d3r = derive2 { name="d3r"; version="0.8.2"; sha256="1i8y2pr79v2mfwgi6sgibsgwp0l717yf86dn07l39nfgyrxgx9f4"; depends=[dplyr htmltools tidyr]; };
+  d3r = derive2 { name="d3r"; version="0.8.4"; sha256="01z70nc48z7l3lr5p3nndiv8hxqlbinn7yr8pd15yk35f46hcsbk"; depends=[dplyr htmltools tidyr]; };
   dChipIO = derive2 { name="dChipIO"; version="0.1.5"; sha256="1xrafw5h071d8rfqaic3gifc80jpiddjz5x6l2cr8kgjvph60gqh"; depends=[]; };
   dCovTS = derive2 { name="dCovTS"; version="1.1"; sha256="1pd50nfmfcqpi8zj20ngl0hc23qa4rabqhc1xci3ivyhs0valhsl"; depends=[doParallel energy foreach]; };
   dGAselID = derive2 { name="dGAselID"; version="1.2"; sha256="0da7fi872i3ycb3j5v4isr4x2z39a68w4mdq859zslmqhiqd43b6"; depends=[ALL Biobase genefilter MLInterfaces]; };
   dHSIC = derive2 { name="dHSIC"; version="2.0"; sha256="1acbzln2rlyranccsjndpw6pj4a2lyb24jb52r2wms8lsg4fn2m9"; depends=[Rcpp]; };
-  dLagM = derive2 { name="dLagM"; version="1.0.2"; sha256="0wl1sivphm6plmvjixxs90ki8a1pi4nb2vxqdm5xxbi0ljwpgl1x"; depends=[AER dynlm formula_tools Hmisc plyr wavethresh]; };
-  dMod = derive2 { name="dMod"; version="0.4"; sha256="12q80pk0j5081qz4rb19iib0n4h1yf1c42iq1z14yyrmki3266pm"; depends=[cOde deSolve ggplot2 plyr rootSolve stringr]; };
+  dLagM = derive2 { name="dLagM"; version="1.0.10"; sha256="0fbblcg2z10a2yijxl6sgbzb59y0mwwg6wg1p68madkr4r3w79mw"; depends=[AER dynlm formula_tools plyr wavethresh]; };
+  dMod = derive2 { name="dMod"; version="0.4.2"; sha256="0zxan4q3xlmk441yzl8jq53qh966njjy9hdprk96pvqf8pa3ca40"; depends=[cOde deSolve digest dplyr ggplot2 plyr rlang rootSolve stringr]; };
   dSVA = derive2 { name="dSVA"; version="1.0"; sha256="0vy0flyg82x0n9vw6jf9f76qy84sp0wnis91faj37ac5hdv3pvsb"; depends=[sva]; };
+  daarem = derive2 { name="daarem"; version="0.2"; sha256="1lh7p8nsn984v3p2fis0ipv4vd2wli60l730i47ij0g38swrs58x"; depends=[]; };
   dad = derive2 { name="dad"; version="3.1.1"; sha256="120f7asg3hbr0c5n821jdr8c7cz67dbv1v646v6xgnyy4n6ym2qa"; depends=[e1071 lattice]; };
-  dae = derive2 { name="dae"; version="3.0-16"; sha256="0nryjijr6cq0pm02ik58lish57ld3nfd16c908jq40dhgws2q7x9"; depends=[ggplot2]; };
+  dae = derive2 { name="dae"; version="3.0-23"; sha256="0rsvnxvfbvcfwm544lwvp4ivwv2nndgscc3c5ap99br7c5jm4xym"; depends=[ggplot2]; };
   daewr = derive2 { name="daewr"; version="1.1-7"; sha256="01n9g3adjk66wx9lm9gl6wa3y9ba5w0w0p5ayj8rx5ywxnm8fnvi"; depends=[BsMD FrF2 lattice]; };
   daff = derive2 { name="daff"; version="0.3.0"; sha256="1kl5pjwxds6bz58zd5xaa1hknd6f9i0512895fhljqi7kvsrldra"; depends=[jsonlite V8]; };
   dafs = derive2 { name="dafs"; version="1.0-37"; sha256="1vdi57qaqdn39yf1ih2gzry02l289q4bffpksglsl4shs6bg2206"; depends=[s20x]; };
@@ -5548,22 +5791,22 @@ in with self; {
   darts = derive2 { name="darts"; version="1.0"; sha256="07i5349s335jaags352mdx8chf47ay41q7b0mh2xjwn2h9kzgqib"; depends=[]; };
   dashboard = derive2 { name="dashboard"; version="0.1.0"; sha256="1znqwvz49r47lp6q48qaas0s63wclgybav82a247qvcavzns3kip"; depends=[Rook]; };
   dat = derive2 { name="dat"; version="0.4.0"; sha256="1nw16hsw9b4hpcl5rqrlw6yk9y2h1pd0ra1c7iz82sknkyd5afi6"; depends=[aoos data_table dplyr Formula magrittr progress tibble]; };
-  data_table = derive2 { name="data.table"; version="1.11.4"; sha256="1mc1drqj5i5ar2za3nkh5j70y37s7z7xwqri2r2b72zkqggg3k7x"; depends=[]; };
-  data_tree = derive2 { name="data.tree"; version="0.7.6"; sha256="0fq7wsql4rmbfjif3klccciq7iqhrwjirj21il6n9r5f1i6x5qxn"; depends=[DiagrammeR R6 stringr]; };
+  data_table = derive2 { name="data.table"; version="1.11.8"; sha256="1nb6wngrk1a30m984524gf26fa1nwgyf4y4an94dibcwb5jp8hnw"; depends=[]; };
+  data_tree = derive2 { name="data.tree"; version="0.7.8"; sha256="05svd1h70dn92imadw2djqqvchx30md74d4z6a00grkajj16cchb"; depends=[DiagrammeR R6 stringr]; };
   data_world = derive2 { name="data.world"; version="1.2.2"; sha256="1d9hh4965f2d0lwh2xxhnxzc948ailkjzdax3d3z9l8lakqfrx0h"; depends=[dwapi httr ini miniUI shiny stringi]; };
-  data360r = derive2 { name="data360r"; version="1.0.1"; sha256="1g245zg70ch81zjmd1ng16lks38qr0a6m63y582w558mza7v148g"; depends=[curl data_table jsonlite reshape2]; };
-  dataCompareR = derive2 { name="dataCompareR"; version="0.1.1"; sha256="06nba2yir2yz1189bsag9yavdf9hfmpswxdy92dlnbz9d27jjsic"; depends=[dplyr knitr markdown stringi]; };
-  dataMaid = derive2 { name="dataMaid"; version="1.1.2"; sha256="1phy03bya6zd3xpypic3ymjqgx8iv2y8661mfyvbz99a2bvspj5a"; depends=[ggplot2 gridExtra haven htmltools magrittr pander robustbase whoami]; };
+  data360r = derive2 { name="data360r"; version="1.0.2"; sha256="09s1p5yh756jl13jq6jx10r009lqvpry5y7y83xd4dqwa180s9gg"; depends=[curl data_table jsonlite reshape2]; };
+  dataCompareR = derive2 { name="dataCompareR"; version="0.1.2"; sha256="0n10dqnrlpwafxys68b3ly156235lhqby71qay0vb0r6bvl2g349"; depends=[dplyr knitr markdown stringi]; };
+  dataMaid = derive2 { name="dataMaid"; version="1.2.0"; sha256="0w2dslyzr35y6mjg46sq7cc3mar6v29md1i716hiix9kzy7b5782"; depends=[DT ggplot2 gridExtra haven htmltools magrittr pander robustbase stringi whoami]; };
   dataMeta = derive2 { name="dataMeta"; version="0.1.1"; sha256="13xxayqxbps07h0xr5b7sb7q30gy5zm7jzzaq4k20fskkjrzhzcm"; depends=[dplyr]; };
-  dataPreparation = derive2 { name="dataPreparation"; version="0.3.6"; sha256="1nx9lbwrp55wyirqyfmwddilinhyd9428l9n4kb8bwms7hjcf18h"; depends=[data_table lubridate Matrix progress stringr]; };
+  dataPreparation = derive2 { name="dataPreparation"; version="0.3.8"; sha256="1k4lww4n57zqf5lk2gwrjjk9qfv3b4zvb18591mnq5bbvylkw2c4"; depends=[data_table lubridate Matrix progress stringr]; };
   dataQualityR = derive2 { name="dataQualityR"; version="1.0"; sha256="0f2410sd6kldv7zkqsmbz1js0p5iq7zwlnfwmmnlbrd303p35p3j"; depends=[]; };
   dataRetrieval = derive2 { name="dataRetrieval"; version="2.7.3"; sha256="0lrv6fyqi7k079wdpqilgjlb4j2qfs3r02d9ip8s9yznfwqsl826"; depends=[curl dplyr httr jsonlite lubridate readr reshape2 xml2]; };
   datacheck = derive2 { name="datacheck"; version="1.2.2"; sha256="1i3n5g1b6ix8gpn4c74s7ll1dbrllrzgpb1f3hk449d6p4kmisq6"; depends=[Hmisc shiny stringr]; };
-  datacheckr = derive2 { name="datacheckr"; version="0.2.0"; sha256="1kk38pb4dsy6ll6drz2gsngzsv81pwmjrbvh3izm22h849mvlypv"; depends=[]; };
+  datadigest = derive2 { name="datadigest"; version="1.0.2"; sha256="1v4nwflrgjhwkrdlrjnqyq1spv1jkgxn1kmapml0zrvnvwf0r1a1"; depends=[haven Hmisc htmltools htmlwidgets jsonlite miniUI shiny tibble]; };
   datadogr = derive2 { name="datadogr"; version="0.1.2"; sha256="10zbxb9gkymw78ras9y4wrifz7cxh3y630yzjcf9ds2p557vcjzp"; depends=[anytime dplyr glue httr lubridate purrr stringr tibble tidyr]; };
-  datadr = derive2 { name="datadr"; version="0.8.6"; sha256="0fmywnxcvw31vfb9iaxqiw19ycnd98v41pdsdknabysr7fpnygfq"; depends=[codetools data_table digest dplyr hexbin magrittr]; };
+  datadr = derive2 { name="datadr"; version="0.8.6.1"; sha256="1x8j34gj5c5arr1iqxfx8cs8hjapylvfjsnh4k6a34z65r83h93y"; depends=[codetools data_table digest dplyr hexbin magrittr]; };
   dataframes2xls = derive2 { name="dataframes2xls"; version="0.4.7"; sha256="10krlv0l5w021z0qd7rj93pzfjjmcjlda4xz4vq470bxbjmn1bss"; depends=[]; };
-  datafsm = derive2 { name="datafsm"; version="0.2.1"; sha256="16l6ssprsvnpzxlfnqj7r061x700704s5gdci5x9ixdjmglakmdd"; depends=[caret GA Rcpp]; };
+  datafsm = derive2 { name="datafsm"; version="0.2.2"; sha256="1q4vfvpvlp127lh6y2ls59gg8dg20syv0sqrwa7sfnml6ysb21q2"; depends=[caret GA Rcpp]; };
   datamap = derive2 { name="datamap"; version="0.1-1"; sha256="0qm4zb9ldg4wz1a7paj5ilr1dhyagq81rk9l2v43hmkv52sssgkv"; depends=[DBI]; };
   datamaps = derive2 { name="datamaps"; version="0.0.3"; sha256="00pvns98miq56z3prbb5qg608d5ns9wbp0711x3mmqg0bld1xwmp"; depends=[htmlwidgets magrittr]; };
   datamart = derive2 { name="datamart"; version="0.5.2"; sha256="0c0l157fzkcp30ch4ymaalcx18zhz6sa5srr50w9izhbx3pmldxp"; depends=[base64 gsubfn markdown RCurl RJSONIO XML]; };
@@ -5571,12 +5814,12 @@ in with self; {
   dataone = derive2 { name="dataone"; version="2.1.1"; sha256="17x1v1v13v06qyjb5mvxcdnlp7ln73rhgaib1w1sc44385m33hxs"; depends=[base64enc datapack hash httr jsonlite parsedate plyr stringr uuid XML]; };
   datapack = derive2 { name="datapack"; version="1.3.1"; sha256="0hzc68vgjvpm235zg8k2642c3jzh3ls9kp6lpz720y1b56q8k3n7"; depends=[digest hash redland uuid XML]; };
   datapasta = derive2 { name="datapasta"; version="3.0.0"; sha256="022ci7iy683lh3fh13a4b3szzqp6j4fchil695bifhi0a34bnxyr"; depends=[clipr readr rstudioapi]; };
-  datarobot = derive2 { name="datarobot"; version="2.8.0"; sha256="06yqp1lvskvcyiz8a2jy7kzv721qrvf5ycw6g9jl2bj84raifmap"; depends=[curl httr jsonlite yaml]; };
-  datasauRus = derive2 { name="datasauRus"; version="0.1.2"; sha256="1ixfc1v0iv5jb4920957xhpq9kchdy482vdsm51wj1961ldrkhvh"; depends=[]; };
+  datarobot = derive2 { name="datarobot"; version="2.9.0"; sha256="0z49dyr0gpgasnf1igyjivpjr2116rvkdirxxvq2nlb6q7i5smjd"; depends=[curl httr jsonlite yaml]; };
+  datasauRus = derive2 { name="datasauRus"; version="0.1.4"; sha256="1w1yhwwrmh95bklacz44wjwynxd8cj3z8b9zvsnzmk18m5a4k0fl"; depends=[]; };
   dataseries = derive2 { name="dataseries"; version="0.2.0"; sha256="11wc2p5m8qbdmkpbd21lpwl28a1dpab88c3gqyrhsn0298lpnip4"; depends=[]; };
-  datasets_load = derive2 { name="datasets.load"; version="0.1.0"; sha256="029rxg0h17nszkxgq5kjd0njymb8pgdsabmz5slshzd2ijjh82jz"; depends=[DT miniUI shiny]; };
+  datasets_load = derive2 { name="datasets.load"; version="0.3.0"; sha256="13ywnqln831i5hlf1cpqcyc77blg99w8jvy8jic17z86fjxh4gim"; depends=[DT miniUI shiny]; };
   datastepr = derive2 { name="datastepr"; version="0.0.2"; sha256="039yggdj8jdici7hwmkjwgix45lvwjl7rw5h2rfzsm9xaq6vw1z2"; depends=[dplyr lazyeval magrittr R6 tibble]; };
-  datastructures = derive2 { name="datastructures"; version="0.2.6"; sha256="1sigcm4w9fj6i538vpf939x9blwx2cfa626lfc8ya8fr8wd5w7vg"; depends=[BH purrr Rcpp]; };
+  datastructures = derive2 { name="datastructures"; version="0.2.7"; sha256="0lvm2n056msbmx3aw3a2wkn8vcyjhb5m9iaqdirpcvbzdpigfj80"; depends=[BH purrr Rcpp]; };
   datasus = derive2 { name="datasus"; version="0.4.1"; sha256="175bzhjigri49p4v9v3kwdc233w0l3v35220m05qsbpn6in7gw67"; depends=[dplyr httr magrittr RCurl readr rvest stringi stringr xml2]; };
   datautils = derive2 { name="datautils"; version="0.1.5"; sha256="1yy25a84zmfh54jvxwa7mv4j296rmjgd40m4p81mrsswlqvncmfn"; depends=[deldir gplots gtools]; };
   dataverse = derive2 { name="dataverse"; version="0.2.0"; sha256="0lyga8rdsir2yr1n9nr10iiaf6a7dxp1nb04bx8mq8ljrvpkgr8n"; depends=[httr jsonlite xml2]; };
@@ -5592,41 +5835,44 @@ in with self; {
   dbConnect = derive2 { name="dbConnect"; version="1.0"; sha256="1vab5l4cah5vgq6a1b9ywx7abwlsk0kjx8vb3ha03hylcx546w42"; depends=[gWidgets RMySQL]; };
   dbEmpLikeGOF = derive2 { name="dbEmpLikeGOF"; version="1.2.4"; sha256="0vhpcxy702cp3lvlif2fzmvccys8iy7bv1fbg6ki2l8bvn2f7c5p"; depends=[]; };
   dbEmpLikeNorm = derive2 { name="dbEmpLikeNorm"; version="1.0.0"; sha256="0h5r2mqgallxf9hin64771qqn9ilgk1kpsjsdj2dqfl3m8zg967l"; depends=[dbEmpLikeGOF]; };
-  dbarts = derive2 { name="dbarts"; version="0.9-4"; sha256="1xglsx2x8jq71q5y377kcc92j8nymh3v11idjj44gixpm8lspljc"; depends=[]; };
+  dbarts = derive2 { name="dbarts"; version="0.9-5"; sha256="0pjw5fljn3fzsimsyfc21xq6klrxmav8snjjjp8myn19viikv1rg"; depends=[]; };
   dbfaker = derive2 { name="dbfaker"; version="0.1.0"; sha256="00n2z4q5drpg26pw826i16rg07m7w66a0r466q2lrl14hxs4rcaq"; depends=[assertive DBI dplyr foreach parsedate RPostgreSQL tidyr]; };
-  dbhydroR = derive2 { name="dbhydroR"; version="0.2-5"; sha256="1vldyc7ksi0pbdvnydbsjzap3ghh447x5c15n0s5isw82mqssnjz"; depends=[httr reshape2 XML]; };
+  dbhydroR = derive2 { name="dbhydroR"; version="0.2-6"; sha256="0pmd6bakifacmdk2zwlsg2zfdqc5jibc5jbd1mvnmllh5d0wwcqm"; depends=[httr reshape2 XML]; };
   dblcens = derive2 { name="dblcens"; version="1.1.7"; sha256="02639vyaqg7jpxih8cljc8snijb78bb084f4j3ns6byd09xbdwcw"; depends=[]; };
   dblr = derive2 { name="dblr"; version="0.1.0"; sha256="0wzmhmp706mw0pkh81nsb7qzclwyhm6f2mjvpvz043ng5xrxwvvw"; depends=[CatEncoders data_table Metrics xgboost]; };
   dbmss = derive2 { name="dbmss"; version="2.6-3"; sha256="0b3vbsb01rz46mspfk8v9dgwqkxnjkv5d6152zg1zsvyv0z9wvqd"; depends=[cubature Rcpp RcppParallel spatstat spatstat_utils]; };
   dbplot = derive2 { name="dbplot"; version="0.3.0"; sha256="1sdhw73a518pj81p4xzfkyk5qnfvv7pmizqgwypmkmr3j87klkdx"; depends=[dplyr ggplot2 purrr rlang]; };
-  dbplyr = derive2 { name="dbplyr"; version="1.2.1"; sha256="1nwrls9c3kc9q7405jp6b9sh23642sz13yw55iikgw134shffj5k"; depends=[assertthat DBI dplyr glue purrr R6 rlang tibble tidyselect]; };
+  dbplyr = derive2 { name="dbplyr"; version="1.2.2"; sha256="0j5w6a1qim972kv4vmvinp3j50yr4idmm9cd3w7y3zsz0nq0nhcx"; depends=[assertthat DBI dplyr glue purrr R6 rlang tibble tidyselect]; };
   dbscan = derive2 { name="dbscan"; version="1.1-2"; sha256="08s73i1pnyfsm10sf15rnn58lj1pzrca6i38dq5ivr5xghb3pksy"; depends=[Rcpp]; };
   dbstats = derive2 { name="dbstats"; version="1.0.5"; sha256="0pr80mx8y87l96hhg0rp3ajxl7yx2f8qr0y1zrjkbzxavjmp9k34"; depends=[cluster pls]; };
-  dbx = derive2 { name="dbx"; version="0.1.0"; sha256="026iqa2wnh0amkv0nnflg3wyqnfrh94imrw486k5i1561abdzndq"; depends=[DBI]; };
+  dbx = derive2 { name="dbx"; version="0.2.2"; sha256="1n6r2plq718xwxw2q2dxc3vql0brnin7dm3lsv1nh41rwk9ypsp8"; depends=[DBI]; };
   dc3net = derive2 { name="dc3net"; version="1.2.0"; sha256="19ibsvbnq6y88vqvgkm31zrqwjhpml59d792bz0zkk50r1q5bnyr"; depends=[c3net igraph RedeR]; };
   dcGOR = derive2 { name="dcGOR"; version="1.0.6"; sha256="0rvwa25r23yayx1i6xhkfaw2z85d2iyfx3slg3aq1m0fa7kj380p"; depends=[dnet igraph Matrix]; };
   dcemriS4 = derive2 { name="dcemriS4"; version="0.55"; sha256="15x4hjc5fwpn80h90q5x9a3p84pp3mxsmcx4hq5l0j52l9dy9nv3"; depends=[oro_nifti]; };
   dclone = derive2 { name="dclone"; version="2.2-0"; sha256="05myb01ypnhf9wdk3i8s9xldn8ihvw7gf4ajqld886nvc306rfkv"; depends=[coda Matrix rjags]; };
   dcminfo = derive2 { name="dcminfo"; version="0.1.7"; sha256="03r0ynzc5cck2rz20zbg5zx8v6s66ivizqav1pjkyvp6kxkmnf8q"; depends=[CDM]; };
   dcmle = derive2 { name="dcmle"; version="0.3-1"; sha256="1d6zk9413h30wcw8q1gnjzk67vshmjcpnh8zjxrsh1h69i1z6rpy"; depends=[coda dclone lattice]; };
-  dcmodify = derive2 { name="dcmodify"; version="0.1.1"; sha256="1a909v6jhihwwmq7lzv2xazrkfa1553kbrjsbjfsh1qrqdiam3sr"; depends=[settings validate yaml]; };
-  dcmr = derive2 { name="dcmr"; version="1.0"; sha256="1a89wr1n8sykjbwa316zlmcffaysksrqnbd89anxqj8sgw9xv6jq"; depends=[ggplot2 KFAS plyr reshape2 tableplot]; };
+  dcmodify = derive2 { name="dcmodify"; version="0.1.2"; sha256="093rh3r3n0wjdpx861xiqd1zqd5v1v9rzxgcynz4awr7jbm5xszi"; depends=[settings validate yaml]; };
   dcurver = derive2 { name="dcurver"; version="0.9.1"; sha256="1cfy0j3rmi3laszrgd3i59cfy4xfs2p6h9dcwbkwq6wnshrpypfn"; depends=[Rcpp RcppArmadillo]; };
   dcv = derive2 { name="dcv"; version="0.1.1"; sha256="12c716x8dnxnqksibpmyysqp2axggvy9dpd55s9bhnsvqvi6dshj"; depends=[lmtest]; };
   ddalpha = derive2 { name="ddalpha"; version="1.3.4"; sha256="16cn0bhbaz9l9k4y79sv2d4f7pvs7dyka273y89igs5jvr99kfj1"; depends=[BH class geometry MASS Rcpp robustbase sfsmisc]; };
   ddeploy = derive2 { name="ddeploy"; version="1.0.4"; sha256="06s4mn93sl33gldda9qab8l3nqig8zq0fh1s2f98igsysmn31br5"; depends=[httr jsonlite]; };
+  ddiv = derive2 { name="ddiv"; version="0.1.0"; sha256="1r2sxlkw1vxf2svdi1nary3hb7c5k1b4j820mj268r9swmy632ch"; depends=[MASS segmented]; };
   ddpcr = derive2 { name="ddpcr"; version="1.9"; sha256="0xdy36wdl972xgzs3chzs7x1n4z1xvj1vahcz2pxa1wrr4sd9z8q"; depends=[dplyr DT ggplot2 lazyeval magrittr mixtools plyr readr shiny shinyjs]; };
+  ddsPLS = derive2 { name="ddsPLS"; version="1.0.1"; sha256="08kkjs50zn9z6mvjiz9ic09w01h7w088plgnbcg10vc7cbjgr05a"; depends=[doParallel foreach MASS RColorBrewer Rdpack]; };
   ddst = derive2 { name="ddst"; version="1.4"; sha256="1y0immm337adkd2bjx8c5pf02w9wysv3gj26f4qf0jiba0f2wk8n"; depends=[evd orthopolynom]; };
   deBInfer = derive2 { name="deBInfer"; version="0.4.2"; sha256="108vijk71sgsj14hwfv78r4lnn68cybvnpr92zvrvl0d82b7qxfd"; depends=[coda deSolve MASS mvtnorm PBSddesolve plyr RColorBrewer truncdist]; };
   deGradInfer = derive2 { name="deGradInfer"; version="1.0.0"; sha256="1wl1pw1rwins4gr47a8ii4diw6wd6cx8ib4l5bhri5f3crbw7l86"; depends=[deSolve gdata gptk]; };
   deSolve = derive2 { name="deSolve"; version="1.21"; sha256="0qqc4mknw1jblzcmph1dg3k1p6w42yal0k1xjh8pqk7yb3a75hs5"; depends=[]; };
   deTestSet = derive2 { name="deTestSet"; version="1.1.5"; sha256="07wbgniwkpp0yry6wvchvszr8isxs1i9k6km951r5c009w1iviwk"; depends=[deSolve]; };
   deadband = derive2 { name="deadband"; version="0.1.0"; sha256="02pq3d0l0wy8bdlyfir3zf46j1ascx4qajyq5cf28yl62q6ngq5d"; depends=[TTR]; };
+  deal = derive2 { name="deal"; version="1.2-39"; sha256="0sw0v1mm004ky1gjw3dmvf2vb7nf2j9s9386bhqxijw63j7xnjd3"; depends=[]; };
   deamer = derive2 { name="deamer"; version="1.0"; sha256="1xbxr78n6s1yhf192ab4syi1naqlwl9z4cxzchrkw80q7bxqfiz8"; depends=[]; };
   debugme = derive2 { name="debugme"; version="1.1.0"; sha256="1c9sg55zvf10h8198jdnpamm6f66lzw3c3jnmdp9ls6na0j0xbjd"; depends=[crayon]; };
-  decido = derive2 { name="decido"; version="0.1.0"; sha256="1d53qcpy165f9izaj0x5x5d5h7jvihhk6mghs9g52dfxrvpndfgn"; depends=[oz Rcpp]; };
+  debugr = derive2 { name="debugr"; version="0.0.1"; sha256="0lfq0s0hibd00558vl3dmvrkzxjc7q62xr8sqzai0pv9a9lhixcn"; depends=[rprojroot rstudioapi]; };
+  decido = derive2 { name="decido"; version="0.2.0"; sha256="17myg67qry1sbd1scv9bbvdh67fpcnqcb6r8n0kajdxb96vnlqk0"; depends=[Rcpp]; };
   decision = derive2 { name="decision"; version="0.1.0"; sha256="13d0yyg5zp7n3r92l0l1dsffxfph6vacrlzga9rz41l5pja72z6g"; depends=[]; };
-  decisionSupport = derive2 { name="decisionSupport"; version="1.103.7"; sha256="1nmrr0fic391sxxfnyp32yb889bwb3zkyb4b8g8sk2pgrsqrbybl"; depends=[chillR msm mvtnorm nleqslv rriskDistributions]; };
+  decisionSupport = derive2 { name="decisionSupport"; version="1.103.8"; sha256="1xp97v22ar4nsv2q4di6rqfin7pa7a6zqw5d1zmm5aqxfi07nc4x"; depends=[chillR msm mvtnorm nleqslv rriskDistributions]; };
   decode = derive2 { name="decode"; version="1.2"; sha256="1qp0765gl3pgfdzjwj7icf3zminxxmrlw6gx3vj51y6c2y5ws4as"; depends=[]; };
   decoder = derive2 { name="decoder"; version="1.1.12"; sha256="0jacp5fqi3l87a86kzhivwd7bl9ndcpymw1vkzmr9r5my8d119pk"; depends=[backports]; };
   decomposedPSF = derive2 { name="decomposedPSF"; version="0.1.3"; sha256="0p9n0qi21facdp9c4fzs78ap4w1wvpvkv51kgx1gkr949kw8cv4n"; depends=[forecast PSF Rlibeemd tseries]; };
@@ -5640,7 +5886,8 @@ in with self; {
   deeplr = derive2 { name="deeplr"; version="1.0.0"; sha256="0pg1vy4x53qns8qn5sv0nqplf23w8dwj0b0wbibpr52lgqjc34r7"; depends=[httr purrr rjson stringr tibble tokenizers utf8]; };
   deepnet = derive2 { name="deepnet"; version="0.2"; sha256="09crwiq12wzwvdp3yxhc40vdh7hsnm4smqamnk4i6hli11ca90h4"; depends=[]; };
   default = derive2 { name="default"; version="1.0.0"; sha256="0hzxgp9la9kll5cw3m4gd02rii571xsn1v53kz407k7k6rfg5mda"; depends=[]; };
-  define = derive2 { name="define"; version="0.2.7"; sha256="0m5nk6shfak43zw68vzc9ncl0a3rrrkhc5ckhb5yhjllj6g5yigf"; depends=[encode Hmisc latexpdf SASxport spec]; };
+  define = derive2 { name="define"; version="0.2.8"; sha256="12xy1l1z1ilk85kbl7x4na99n6hc5axwrhpb6m6ipmbii4vv407v"; depends=[encode Hmisc latexpdf SASxport spec]; };
+  deflateBR = derive2 { name="deflateBR"; version="1.1.2"; sha256="17zsy10k12gmffbk7nagi60xj347q0bf7wr885fiylqz2xiy9fl9"; depends=[dplyr httr lubridate]; };
   deformula = derive2 { name="deformula"; version="0.1.1"; sha256="0h85yzl8kvjwrn1mkzyblvknf7gg8kx8y85qnvkwfbr9ik42ngn1"; depends=[]; };
   degenes = derive2 { name="degenes"; version="1.1"; sha256="1xxn5j06qizywimrp1pl8z3yjdy1a167b9jnm77gmv87rp6j240c"; depends=[]; };
   degreenet = derive2 { name="degreenet"; version="1.3-3"; sha256="07mkj2sdp09624mmb1x3djjypnrzn43qn2j4m93blli51j6zchm3"; depends=[igraph network]; };
@@ -5651,12 +5898,13 @@ in with self; {
   deltaPlotR = derive2 { name="deltaPlotR"; version="1.6"; sha256="15vjg3viyfrxvvh34p8i7j8p0vpg5628g8198adhi0i2ri3ygz9a"; depends=[MASS]; };
   deltar = derive2 { name="deltar"; version="1.0.0"; sha256="1ki89ysz4qlq5z094ybg3aqfcb6g633ccvpj1cg6nri9z5qjwpm1"; depends=[Bchron]; };
   demi = derive2 { name="demi"; version="1.1.2"; sha256="04dq4db9ibvv91nm0gz8dfbgv1gpmalf9hv6i78dwhh1xzjg1mig"; depends=[affxparser affy devtools oligo plyr R_utils]; };
-  deming = derive2 { name="deming"; version="1.2"; sha256="0lhc9asly988j38d6pdz54b8yxzigrchnz57inj2my33cfbzp300"; depends=[boot]; };
+  deming = derive2 { name="deming"; version="1.3"; sha256="0r5wx0cj6ym97jplvfyz36iig7zczdd6fiqf8g3vc4f53mqlhx9b"; depends=[boot]; };
   demoKde = derive2 { name="demoKde"; version="0.9-4"; sha256="0p4v808m42wbv8ibdfqzm43cbbg0yl452wnm1mzqq2n37z6yljkr"; depends=[]; };
-  demogR = derive2 { name="demogR"; version="0.5.0"; sha256="1y7pkf1m8fqjsvs0szyaqga2y7p3dvj0r85nz8nzqbmy4zrrv4w8"; depends=[]; };
+  demogR = derive2 { name="demogR"; version="0.6.0"; sha256="06x82ffbdv6ifl8xh52d3npdwha67v1ylfjp78j5pa4wdqkg221b"; depends=[]; };
   demography = derive2 { name="demography"; version="1.20"; sha256="097k0chs8shm1r9ny6jdx2kp2shyxsivjw1n1rhb3bs0m0l3vm9r"; depends=[cobs forecast ftsa mgcv rainbow RCurl strucchange]; };
-  dendextend = derive2 { name="dendextend"; version="1.8.0"; sha256="1virn3c232xwcq3d0hhkgjh5gpzl01s39iwii5gxcm9mnsxjzdrh"; depends=[fpc ggplot2 magrittr viridis whisker]; };
-  dendroTools = derive2 { name="dendroTools"; version="0.0.9"; sha256="192bzpq7zxnknkn7g6w10lsqdj5qk0dq2z0dpdripi768y63cdim"; depends=[brnn dplyr ggplot2 gridExtra knitr magrittr MLmetrics oce plotly reshape reshape2 RWeka scales]; };
+  demu = derive2 { name="demu"; version="0.2.0"; sha256="0prfl2i3q2n5f4qpvkksyi8qvwj2fd9v82cr6val7abvcvbn9276"; depends=[ClusterR fields Matrix Rcpp RcppArmadillo spam]; };
+  dendextend = derive2 { name="dendextend"; version="1.9.0"; sha256="1jiani6zwfajky2vafvay2hq158nh99rdrk3j00lycspds9v35fd"; depends=[fpc ggplot2 magrittr viridis whisker]; };
+  dendroTools = derive2 { name="dendroTools"; version="1.0.1"; sha256="1ym8vkvi4b6wv6iygzbj1kiv54cayfixlmx1ilvs2cv794rbfmck"; depends=[brnn dplyr ggplot2 gridExtra knitr magrittr MLmetrics oce plotly reshape reshape2 RWeka scales]; };
   dendroextras = derive2 { name="dendroextras"; version="0.2.3"; sha256="0hb7crbgsnbcwvbk05iz5ik45n7zgysmwjj6xc46131yd8l0i1qx"; depends=[]; };
   dendrometeR = derive2 { name="dendrometeR"; version="1.0.0"; sha256="1par27ipgbfbrmdlwvkf82i5dgnfrcawmavakrf8lplin2hhb7gs"; depends=[forecast pspline zoo]; };
   dendsort = derive2 { name="dendsort"; version="0.3.3"; sha256="1m4qh79ppfvipmbi8m8vwq0hqmwwipbg5izihz5j6x8a4g5i6iym"; depends=[]; };
@@ -5670,18 +5918,19 @@ in with self; {
   denstrip = derive2 { name="denstrip"; version="1.5.4"; sha256="0hzxphj740q6pfa1q42knr7n12bmnawg7b2fs74msxn83dka5cmq"; depends=[lattice]; };
   depend_truncation = derive2 { name="depend.truncation"; version="3.0"; sha256="1jym52qxx8v4kbq2578d03q2593q96jccr85if47djikw0aaxmcr"; depends=[mvtnorm]; };
   depmix = derive2 { name="depmix"; version="0.9.14"; sha256="12mvsd9zab55yg02r309h5i7hldwhh3bd60bzcvwip8vsmym5611"; depends=[MASS]; };
-  depmixS4 = derive2 { name="depmixS4"; version="1.3-3"; sha256="0ls30v59hzyd684w4a3aygq1i5m8iq4gxsh8mmjxdq8qx0v84hk2"; depends=[MASS nnet Rsolnp]; };
+  depmixS4 = derive2 { name="depmixS4"; version="1.3-5"; sha256="155bxfyhkmwz3asx1q8myvn3qjb3i2aq7pnw0r7kxygxzn071hkq"; depends=[MASS nnet Rsolnp]; };
   depth = derive2 { name="depth"; version="2.1-1"; sha256="17fxv4a5fbb65p7kmb4iakik5ng6401y7gmknkfr66fmjq65i1sm"; depends=[abind circular rgl]; };
   depth_plot = derive2 { name="depth.plot"; version="0.1"; sha256="0zjg9iyqmcnkvwc9w2j7lmk3k9nsg6n8m6vq5x44d1bp4g2gr6jv"; depends=[mvtnorm]; };
   depthTools = derive2 { name="depthTools"; version="0.4"; sha256="1699r0h1ksgrlz9xafw2jnqfsc7xs0yaw97fc6dv3r11x6gxk00y"; depends=[]; };
   dequer = derive2 { name="dequer"; version="2.0-1"; sha256="04kzlff8xa733qkkx0gacgig7d4l7yvgqmzva0mj8di12byh214p"; depends=[]; };
   derivmkts = derive2 { name="derivmkts"; version="0.2.3"; sha256="0qw1xdn3mhz9kx4z352hdny2f46p3rx61hjk2ha5bibm8hnyzdpa"; depends=[mnormt testthat]; };
   desc = derive2 { name="desc"; version="1.2.0"; sha256="1s6s13fk6sxwcj8wzkwxl9vr33153xx11p5wi9avqx3rzkabavz6"; depends=[assertthat crayon R6 rprojroot]; };
-  descomponer = derive2 { name="descomponer"; version="1.4"; sha256="12zpkixclm6jmrgzvcy48c1mdqh9dgadzf9026wjyamphxkkjbip"; depends=[taRifx]; };
+  descomponer = derive2 { name="descomponer"; version="1.5"; sha256="1dxnvignd3hwagkghvdiqfrkxlhyvxndprcyh8n9pmq8zgask5qk"; depends=[]; };
   descr = derive2 { name="descr"; version="1.1.4"; sha256="05maviw8l8qhmy7p80gs3dlyy6pqk5k1686ny4xla4psj8mr7lbk"; depends=[xtable]; };
   describer = derive2 { name="describer"; version="0.2.0"; sha256="1pjyihmn4gkaamixsc3qwynsc02pwv9bgn6s7z7acmmsybhhs6xn"; depends=[]; };
   descriptr = derive2 { name="descriptr"; version="0.4.1"; sha256="1jpcfpidi49lyn02sl0hwsixzln9frrz03vrap1aq0phjcln39hh"; depends=[dplyr forcats ggplot2 magrittr rlang scales shiny tibble tidyr]; };
-  desctable = derive2 { name="desctable"; version="0.1.2"; sha256="135v6gmrvmap71il13i5s0wsxddv8wyqb70ygl05jbmb3n4x61y7"; depends=[dplyr DT htmltools pander purrr]; };
+  descstatsr = derive2 { name="descstatsr"; version="0.1.0"; sha256="1pz5lww1dkkqvsq6h0vkch39bj76qffmmag3zlag5in75s4wj0wl"; depends=[moments zoo]; };
+  desctable = derive2 { name="desctable"; version="0.1.3"; sha256="1bc0xb7v1fnl91vbrh6xbqxnk1yq5ahxchlxb30dvpkjzycdnr4w"; depends=[dplyr DT htmltools pander purrr]; };
   deseasonalize = derive2 { name="deseasonalize"; version="1.35"; sha256="1fjsa7g34dckjs6mx9b10m99byxagggm0p9pw2f1vmpjqlasin0l"; depends=[FitAR lattice]; };
   desiR = derive2 { name="desiR"; version="1.2.1"; sha256="0ghcv96bbwn74mka4dpf2lkpnlikjn3q6lx2sl8bbw77nriap0n6"; depends=[]; };
   designGG = derive2 { name="designGG"; version="1.1"; sha256="1x043j36llwd7kd4skbpl2smz2ybsxjqf5yd1xwqmardq60gdv2w"; depends=[]; };
@@ -5690,7 +5939,7 @@ in with self; {
   desirability = derive2 { name="desirability"; version="2.1"; sha256="094gxvp6a60lfcc0a0gk9rv1p6ajnzq9m58sy8cvhcj5337g4fmk"; depends=[]; };
   desire = derive2 { name="desire"; version="1.0.7"; sha256="0jmj644nj6ck0gsk7c30af9wbg3asf0pqv1fny98irndqv508kf6"; depends=[loglognorm]; };
   desplot = derive2 { name="desplot"; version="1.4"; sha256="0brmdp095zcwx7gncng1ls972kr67ldwiq081wyafn9jm9z461ix"; depends=[lattice reshape2]; };
-  detect = derive2 { name="detect"; version="0.4-1"; sha256="0hq3imp4w6bd8x4njcfrvcs5lf0vrfnags1zdph86d7hlrwfds62"; depends=[Formula Matrix pbapply]; };
+  detect = derive2 { name="detect"; version="0.4-2"; sha256="03xzv13y2l15afyp00lgvbh51vxg1jaakxjcbnsxzdgb11039x2g"; depends=[Formula Matrix pbapply]; };
   detectRUNS = derive2 { name="detectRUNS"; version="0.9.5"; sha256="0w4pz7waaabgsb47xcmgiz8bzlrs2a83y3v6j7bqb5125y1wn8hw"; depends=[data_table ggplot2 gridExtra iterators itertools plyr Rcpp reshape2]; };
   detector = derive2 { name="detector"; version="0.1.0"; sha256="010i063b94hzx7qac8gpl67gmk7hzgqm9i1c7pbbw4la3wcd9lz7"; depends=[stringr]; };
   detpack = derive2 { name="detpack"; version="1.1.1"; sha256="0q7c01bjrvrlbrhb8vhkjw2f43jp46ny3jdyay0j760cfdaqb5zk"; depends=[]; };
@@ -5699,10 +5948,11 @@ in with self; {
   detzrcr = derive2 { name="detzrcr"; version="0.2.3"; sha256="09a8x7zphsk06n64qqbh840vrp89sza9vfnz08il6jdy77j02974"; depends=[ggplot2 MASS shiny]; };
   devEMF = derive2 { name="devEMF"; version="3.6-1"; sha256="0lhf11bdgizhm2im13d0mc0ca834kg2cyabz92jp4mmhjvglrgf3"; depends=[]; };
   devFunc = derive2 { name="devFunc"; version="0.1"; sha256="0f2s5gssk9napmah7zcss1rnh7pzlq90gzwcnvyr9rrq6k118n8q"; depends=[plyr stringr]; };
-  devRate = derive2 { name="devRate"; version="0.1.7"; sha256="1vmq467a60fz45fwdp0qs51fzdrdyj61vvdlk82046akzs8mvjvy"; depends=[]; };
-  devtools = derive2 { name="devtools"; version="1.13.6"; sha256="1d9n49djydywfyp9w3njgxs5lag4ac7719wmxy1lkgcmn3l9sx5r"; depends=[digest git2r httr jsonlite memoise rstudioapi whisker withr]; };
-  dexter = derive2 { name="dexter"; version="0.8.0"; sha256="1lnhgy3ji6qa9qw0hdv4r8m4igcsasg0fx1kkz8lr80hxdg98zc3"; depends=[colorspace DBI dbplyr dplyr DT fastmatch purrr RColorBrewer rlang rprintf RSQLite shiny shinyBS shinydashboard tibble tidyr]; };
-  dextergui = derive2 { name="dextergui"; version="0.1.3"; sha256="0k0dvsb5vvbhw2x57kgsifpiv9jrglapxzillj0nglg8i71wwypg"; depends=[Cairo DBI dexter dplyr DT ggExtra ggplot2 ggridges htmltools htmlwidgets igraph jsonlite networkD3 RColorBrewer RCurl readODS readxl rlang shiny shinyBS shinyFiles shinyjs tibble tidyr writexl]; };
+  devRate = derive2 { name="devRate"; version="0.1.9"; sha256="1dy9hfhhlxj5sim69870dkwrarrl5pvmfvls8ys43h300my331gp"; depends=[]; };
+  devtools = derive2 { name="devtools"; version="2.0.1"; sha256="1nyspqicn9zd1rgq3k07b3179i8w5ys6jbd65g9q8qczrb7z3x8f"; depends=[callr cli digest git2r httr jsonlite memoise pkgbuild pkgload rcmdcheck remotes rstudioapi sessioninfo usethis withr]; };
+  dexter = derive2 { name="dexter"; version="0.8.1"; sha256="0lkx1prngds2jcqw9b504as1q80ghgncms0sldw2pdgmklncha6l"; depends=[colorspace DBI dbplyr dplyr DT fastmatch purrr RColorBrewer rlang rprintf RSQLite shiny shinyBS shinydashboard tibble tidyr]; };
+  dexterMST = derive2 { name="dexterMST"; version="0.1.0"; sha256="0c9djz8n38x9ff9yh8ah77a4nnhanyqxnbzhi5i77si0zk8p7505"; depends=[crayon DBI dbplyr dexter dplyr fastmatch igraph Rcpp rlang RSQLite tibble tidyr]; };
+  dextergui = derive2 { name="dextergui"; version="0.1.4"; sha256="0im7ych6wypjrywmzwk5d40ak87rbaqqql4rq8zf10ysai4j9gwm"; depends=[Cairo DBI dexter dplyr DT ggExtra ggplot2 ggridges htmltools htmlwidgets igraph jsonlite networkD3 RColorBrewer RCurl readODS readxl rlang shiny shinyBS shinyFiles shinyjs tibble tidyr writexl]; };
   df2json = derive2 { name="df2json"; version="0.0.2"; sha256="10m7xn7rm4aql1bzpckjcx5kvdw44m1pxgzqkgkd40lzqb1cwk18"; depends=[rjson]; };
   dfCompare = derive2 { name="dfCompare"; version="1.0.0"; sha256="1lhx69j0bkjbnp5jz23hrbxjcf04vf3big4k593ixz003xs2077f"; depends=[]; };
   dfcomb = derive2 { name="dfcomb"; version="2.5-0"; sha256="16wa7shc5rw8sax0x94i0lvg1h4wnq51mqdvsc5z8a5ki84jxlra"; depends=[BH Rcpp RcppArmadillo RcppProgress]; };
@@ -5713,27 +5963,30 @@ in with self; {
   dfoptim = derive2 { name="dfoptim"; version="2018.2-1"; sha256="1gya0sx8ajy04kscds06d6m9prxdwr1dmyfc6awsm6r1jwbibzb3"; depends=[]; };
   dfped = derive2 { name="dfped"; version="1.1"; sha256="11ffsah14igba276m9d3cla0kgb3isizm5d7j1iqcd0wq23il7hq"; depends=[ggplot2 rstan]; };
   dfphase1 = derive2 { name="dfphase1"; version="1.1.1"; sha256="0bk4bl5lqd7m4mzk6kg71fmh918wcy85zghr3lyayxlk30fl4ppc"; depends=[lattice Rcpp robustbase]; };
-  dfpk = derive2 { name="dfpk"; version="3.4.1"; sha256="1nmn5ir20wx3qvcf9rvnwnni5kqbn8adhc2354fb5gcvbnxlc7mc"; depends=[BH dfcrm ggplot2 PK Rcpp RcppEigen rstan StanHeaders]; };
+  dfpk = derive2 { name="dfpk"; version="3.5.0"; sha256="1jl1ddi7kq1w95gvz3j4a4yxvnjk3ml7vqvb83lqzkb1ms8wlxw3"; depends=[BH dfcrm ggplot2 PK Rcpp RcppEigen rstan StanHeaders]; };
   dga = derive2 { name="dga"; version="1.2"; sha256="13mfampnghcs5xplzq69bw948lqhw561pn54j3gb0ydsg5bm5vmr"; depends=[chron]; };
   dggridR = derive2 { name="dggridR"; version="2.0.3"; sha256="1gdwxrl5c5mprfk7rx5mk8davi4mmg1crccxaaipnbnsilg9j9vh"; depends=[dplyr ggplot2 Rcpp rgdal sp]; };
-  dglars = derive2 { name="dglars"; version="2.0.1"; sha256="18iypbvk805xh0ybwawwvswsp086q2kjj2cmk1yhlq810260j686"; depends=[Matrix]; };
+  dglars = derive2 { name="dglars"; version="2.1.0"; sha256="1miqrsb1k36mcfvwf4i94z7sn3qq6wkikwv3fiyzyd2q7ny9a068"; depends=[Matrix]; };
   dglm = derive2 { name="dglm"; version="1.8.3"; sha256="0vj4vddqcrjzgqsi6zsxm22gj5pa5dm50wcxip4vi8kbwxaahnaj"; depends=[statmod]; };
   dgmb = derive2 { name="dgmb"; version="1.2"; sha256="1r5md917wipx78n63x87fpvsc3h87c68cpacrrs9dhss199p1a5k"; depends=[abind MASS]; };
-  dgo = derive2 { name="dgo"; version="0.2.14"; sha256="0pizzyqgnng3g5g9q2qa5wcwfdl94rz69ah071qx01k03fzayg86"; depends=[assertthat data_table dgodata ggplot2 lubridate R6 rstan survey]; };
+  dgo = derive2 { name="dgo"; version="0.2.15"; sha256="16z3vag1fwsnmynqh0zpwq5qp5ac3xf4787lwqy7asx8qgcc3wmw"; depends=[assertthat data_table dgodata ggplot2 lubridate R6 rstan survey]; };
   dgodata = derive2 { name="dgodata"; version="0.0.2"; sha256="03cyiig8pn7fdkrkrd29cwy5g63bp57bpl9jmdxfi03smngzbz0m"; depends=[]; };
   dgof = derive2 { name="dgof"; version="1.2"; sha256="02qnb3i131hx05k8l5n3xbl5sqmmc2fh19bsgcacgj8ixs4wyjvi"; depends=[]; };
   dhga = derive2 { name="dhga"; version="0.1"; sha256="1n48irj53g3kn451ak5ly50wxdn7qmzi2kib8clsvcx2n7mvpgcm"; depends=[VennDiagram]; };
+  dhglm = derive2 { name="dhglm"; version="2.0"; sha256="1918wkylldcdxjggly3a4yh4cv2nkig5bjfx0j79av633hahlg92"; depends=[boot car MASS Matrix sandwich]; };
+  dhh = derive2 { name="dhh"; version="0.0.1"; sha256="00kg2x1was85aq2vr15bak8y5p4mymbs8pbriijlbw64401djmb0"; depends=[]; };
   di = derive2 { name="di"; version="1.1.4"; sha256="1w2gjhyi410z98d8wnhbd69jxm69nz4pmnr4fb09i70a90f53s25"; depends=[scales]; };
   diagis = derive2 { name="diagis"; version="0.1.3-1"; sha256="1cagcr5znhrg4fp96d79ly0z7bs3hhh3zfspclyfc88p2p3qsd96"; depends=[coda ggplot2 gridExtra Rcpp RcppArmadillo]; };
   diagmeta = derive2 { name="diagmeta"; version="0.2-0"; sha256="1qdpsn0c4g459p8p90p2a9fghiwjqqmmanz3zsa5a3lv7zxmk496"; depends=[lme4 meta]; };
   diagonals = derive2 { name="diagonals"; version="0.4.0"; sha256="03n6lm0hkgylswgj1qlgrjigm7basl5frip99mxx19mvaqa3bhqy"; depends=[]; };
   diagram = derive2 { name="diagram"; version="1.6.4"; sha256="0f6ffprn5k0ir1s7m9s7izc64aa17r3gnygagz5bihrlsvawaavw"; depends=[shape]; };
+  dials = derive2 { name="dials"; version="0.0.1"; sha256="09bi7smr1cfhnm42n31bjpxni74nay34a1vkvqcfc587g5i5x5bq"; depends=[dplyr glue purrr rlang scales tibble]; };
   diaplt = derive2 { name="diaplt"; version="1.3.0"; sha256="1kkqhkv3s8rrpqd05jidjdnqmlnb3s9f8rr34rfqj7k4nh0qzzcz"; depends=[]; };
   dice = derive2 { name="dice"; version="1.2"; sha256="0gic7lqnsdmwv3dbzwwmcwdfyfqlq8kpr2pciqphd1j2ligzwl3s"; depends=[gtools]; };
   diceR = derive2 { name="diceR"; version="0.5.1"; sha256="0r3sj6qkkj6yqz21jcbjylqsr8n6yhghix2568gffckcijzgppar"; depends=[abind apcluster assertthat blockcluster caret class cli clue cluster clusterCrit clValid dbscan dplyr e1071 flux ggplot2 gplots Hmisc infotheo kernlab klaR kohonen magrittr mclust NMF progress purrr quantable RankAggreg RColorBrewer Rcpp Rtsne sigclust stringr tibble tidyr]; };
   dichromat = derive2 { name="dichromat"; version="2.0-0"; sha256="1l8db1nk29ccqg3mkbafvfiw0775iq4gapysf88xq2zp6spiw59i"; depends=[]; };
   dicionariosIBGE = derive2 { name="dicionariosIBGE"; version="1.6"; sha256="1rss1ydhcn6sma2lmlpq6s0h3dglwc20w499x1jzkcjnzc1rc7gl"; depends=[]; };
-  did = derive2 { name="did"; version="1.0.0"; sha256="0fgwassb8m92iij78f045fl8441f1x9dhf4hnc93wl16yv5hh7g7"; depends=[BMisc formula_tools ggplot2 gridExtra knitr MASS pbapply]; };
+  did = derive2 { name="did"; version="1.2.0"; sha256="18x8h50zph7xahqd2d9q1269ch8lgzcl5lflhl7860v3yk947zpa"; depends=[BMisc ggplot2 gridExtra knitr MASS pbapply]; };
   didrooRFM = derive2 { name="didrooRFM"; version="1.0.0"; sha256="12clfnbm56jwldw0afb0nb0argnd97mx7369jiywhxy0p4xqibqq"; depends=[dplyr]; };
   dief = derive2 { name="dief"; version="1.1"; sha256="0x3dwlfi130wmbsmm8vf66qxqn001b07yaiq6mp1s707dnl131mc"; depends=[flux fmsb ggplot2 plyr]; };
   dielectric = derive2 { name="dielectric"; version="0.2.3"; sha256="1p1c0w7a67zxp1cb99yinylk5r1v89mmpfybcy94ydydhydbhivk"; depends=[]; };
@@ -5746,20 +5999,20 @@ in with self; {
   diffMeanVar = derive2 { name="diffMeanVar"; version="0.0.6"; sha256="0zivbd22hp0biy4vnjh21f4djfg5bl9az0wlhn47rk7fw65rgipb"; depends=[Biobase lawstat MASS methylumi missMethyl]; };
   diffMeshGP = derive2 { name="diffMeshGP"; version="0.1.0"; sha256="1dc37hxh3fi27gw11kij57j78p87bza77s82niagdv6dqhldj5a4"; depends=[]; };
   diffdepprop = derive2 { name="diffdepprop"; version="0.1-9"; sha256="0mgrm1isr26v2mcm6fkzc7443ji00vpnqmw4zngx81n7442b3cl2"; depends=[gee PropCIs rootSolve]; };
-  diffdf = derive2 { name="diffdf"; version="1.0.0"; sha256="1qb27pkjs9bapwgqlb1kablcz54hs4cg0mmf2sisl1b8q4j68q96"; depends=[tibble]; };
-  diffeR = derive2 { name="diffeR"; version="0.0-4"; sha256="08g21h3yq8rm2i6ah364nfadg7hnghc21jnpi5aqwzqyd2v93b67"; depends=[ggplot2 raster rgdal]; };
+  diffdf = derive2 { name="diffdf"; version="1.0.1"; sha256="05kl841h9lcirp874g7ny1xjijd1dpdqxwyzwwqwpcvibf69pprm"; depends=[tibble]; };
+  diffeR = derive2 { name="diffeR"; version="0.0-5"; sha256="1r1klvi83qp5xaxna3l2v48zjj5ngfcrq535m1crnmsjj4iwqilv"; depends=[ggplot2 raster reshape2 rgdal]; };
   diffee = derive2 { name="diffee"; version="1.1.0"; sha256="01lb1prz70mxgymhhsvx48kbfy69xyyaabsmfhf28af9wfb89662"; depends=[igraph pcaPP]; };
   diffeqr = derive2 { name="diffeqr"; version="0.1.1"; sha256="1zvjl2i38nyhk63bncqc5cva1m40sm692w7a36qc455s2jnskfh8"; depends=[JuliaCall stringr]; };
-  diffobj = derive2 { name="diffobj"; version="0.1.10"; sha256="1y3fijswy9fw7q9xdv8cz9vm279av2hlzwbq8fc8lffwrbfl1zs1"; depends=[crayon]; };
+  diffobj = derive2 { name="diffobj"; version="0.1.11"; sha256="1aqdb4q3zixf2xg9q0387vp2xrmfwl7h5j5wnlr0mxwbxv8423ly"; depends=[crayon]; };
   diffpriv = derive2 { name="diffpriv"; version="0.4.2"; sha256="12q2v93369bshid83rsy1csbr9ay6rfpd8zdxm12zi7py3f9sjs8"; depends=[gsl]; };
   diffr = derive2 { name="diffr"; version="0.1"; sha256="0ydwnpyzirynffsnvip667y0jqzy7yfqlfpqhb38xvmd9rmwfbp8"; depends=[htmlwidgets]; };
   diffractometry = derive2 { name="diffractometry"; version="0.1-10"; sha256="09mkqg6avky26c2dsnhpcmby76hfqg0pwmnjhkbp4px2k6c9inrc"; depends=[]; };
   diffrprojects = derive2 { name="diffrprojects"; version="0.1.14"; sha256="1mnqf5zs1w8dx9y5iwn4blyzb9j60ayzc04zxj5l8804nd527n25"; depends=[dplyr hellno magrittr R6 Rcpp RSQLite rtext stringb stringdist]; };
   diffrprojectswidget = derive2 { name="diffrprojectswidget"; version="0.1.5"; sha256="1h69mc1wayi80vz4b9cqydylf4kp9mxsigv05r0f903pqakdrzcw"; depends=[diffrprojects dplyr hellno htmlwidgets jsonlite magrittr tidyr]; };
   diffusion = derive2 { name="diffusion"; version="0.2.7"; sha256="1j9s9vw5sc4k956bk4yp3bf4fnp7lhhkwcvlzvsh1w4dyaj8l35h"; depends=[dfoptim nloptr systemfit]; };
-  diffusionMap = derive2 { name="diffusionMap"; version="1.1-0"; sha256="1l985q2hfc8ss5afajik4p25dx628yikvhdimz5s0pql800q2yv3"; depends=[igraph Matrix scatterplot3d]; };
+  diffusionMap = derive2 { name="diffusionMap"; version="1.1-0.1"; sha256="11l4kbciawvli5nlsi4qaf8afmgk5xgqiqpdyhvaqri5mx0zhk5j"; depends=[igraph Matrix scatterplot3d]; };
   diffusr = derive2 { name="diffusr"; version="0.1.4"; sha256="1f3h387kblw1xzdnxphwgfl1n7f6i07kk7kfslvbfxkalbish6ii"; depends=[igraph Rcpp RcppEigen]; };
-  digest = derive2 { name="digest"; version="0.6.15"; sha256="1ia4ak956gnn0f5aqhwgam6g9z6f1y57zz8jv45jc8h79yxp8bl8"; depends=[]; };
+  digest = derive2 { name="digest"; version="0.6.18"; sha256="0k3iv0r8wy8w7zchmgrnrqv3bc149075j4817kf0q521vi4f6vbj"; depends=[]; };
   digitalPCR = derive2 { name="digitalPCR"; version="1.1.0"; sha256="0hwqq84yr1hnvf4bygc5425887dhqjjjyy1ils71iavcal04s8pb"; depends=[]; };
   digitize = derive2 { name="digitize"; version="0.0.4"; sha256="1qw4x4z9vrs79sd9b2daw668nc6nvjl4qhayfqmd87yxa2ydv6x0"; depends=[readbitmap]; };
   dils = derive2 { name="dils"; version="0.8.1"; sha256="1q6ba9j14hzf7xy895mzxc6n9yjgind55jf350iqscwzxf7ynp33"; depends=[igraph Rcpp]; };
@@ -5767,13 +6020,15 @@ in with self; {
   dina = derive2 { name="dina"; version="1.0.2"; sha256="1dgjny7ik2g15zbi3ywl0xbab6vnv5qkxfrb4x79w7lic5m90ldc"; depends=[Rcpp RcppArmadillo]; };
   dinamic = derive2 { name="dinamic"; version="1.0"; sha256="0mx72q83bbwm10ayr3f1dzwr5wgz7gclw7rh39yyh95slg237nzr"; depends=[]; };
   dineq = derive2 { name="dineq"; version="0.1.0"; sha256="1xrhrdc970f7hm9xng9z7xmshnmmz89cn3gmnyabzprx44ccr9sl"; depends=[boot Hmisc]; };
+  dint = derive2 { name="dint"; version="2.0.0"; sha256="1rrkf1j7vdnxskmjzh41shwxmcy624qrhipfpdvp76ijf1hf32vk"; depends=[]; };
   diptest = derive2 { name="diptest"; version="0.75-7"; sha256="0rcgycgp0bf8vhga1wwgfcz3pqs5l26hgzsgf2f97dwfna40i1p1"; depends=[]; };
   directPA = derive2 { name="directPA"; version="1.3"; sha256="0hcs56y69gdkfyk2xl0vxh01c19s6z1lfv02g056wxr24qfsx08c"; depends=[calibrate rgl]; };
   directlabels = derive2 { name="directlabels"; version="2018.05.22"; sha256="0xcpc56ssb9430b0xcdhayk3qaak2qcakyss2pz14y5w2027hblv"; depends=[quadprog]; };
+  directotree = derive2 { name="directotree"; version="1.0.0"; sha256="1yv703mb3fnvjxr2rrxvb8x869hbbjx4l94qbbsmy0ssknayq60y"; depends=[collapsibleTree data_tree]; };
   dirichletprocess = derive2 { name="dirichletprocess"; version="0.2.1"; sha256="0ip7mcjddqg7z9hqrvbxixvkqp9j4d92zgpk6hn6acd4fxhb17r6"; depends=[ggplot2 gtools mvtnorm]; };
   dirmcmc = derive2 { name="dirmcmc"; version="1.3.3"; sha256="117p3jvinmha7a2phcpzq38ig05kcranp15xbxqvv0cgh3c95fjr"; depends=[mcmcse]; };
   dirmult = derive2 { name="dirmult"; version="0.1.3-4"; sha256="1r9bhw1z0c1cgfv7jc0pvdx3fpnwplkxwz8j8jjvw14zyx803rnz"; depends=[]; };
-  discSurv = derive2 { name="discSurv"; version="1.3.1"; sha256="0vq3g42xy97ksgsghhz232spkbkr2zs8i9nm7xwdabysi9fgqdsv"; depends=[functional mgcv mvtnorm]; };
+  discSurv = derive2 { name="discSurv"; version="1.3.4"; sha256="0xawvadgy5lkzhk60kb4ga1gh4niqpr9p6wxgrp88mbwp7q600kl"; depends=[functional mgcv mvtnorm]; };
   discgolf = derive2 { name="discgolf"; version="0.2.0"; sha256="07clh1awnibgrh7vl4a51r8dbya2rbmicm8v8x8mq8h8am2b3j0s"; depends=[crul jsonlite xml2]; };
   disclap = derive2 { name="disclap"; version="1.5"; sha256="0piv9gxhxcd4pbh5qjn9c3199f32y3qiw5vy8cr77ki70dnmr66n"; depends=[]; };
   disclapmix = derive2 { name="disclapmix"; version="1.7"; sha256="11qkk5bl5x3axyfdzm1hw522g643mmvk5qg7g3sc3licfvsn32i1"; depends=[cluster disclap MASS Rcpp RcppProgress]; };
@@ -5784,10 +6039,10 @@ in with self; {
   discretecdAlgorithm = derive2 { name="discretecdAlgorithm"; version="0.0.5"; sha256="1q4g455jjg293yxdwdppw04ah15idk5j233x2kbqv0jni4v0l2bf"; depends=[igraph Rcpp RcppEigen sparsebnUtils]; };
   discretization = derive2 { name="discretization"; version="1.0-1"; sha256="00vq2qsssnvgpx7ihbi9wcafpb29rgv01r06fwqf9nmv5hpwqbmp"; depends=[]; };
   discrimARTs = derive2 { name="discrimARTs"; version="0.2"; sha256="088v4awic4bhzqcr7nvk2nldf8cm1jqshg2pzjd2l2p1cgwmlxib"; depends=[RUnit]; };
-  diseasemapping = derive2 { name="diseasemapping"; version="1.4.2"; sha256="065ndvpx3q9ycxfjl1f2iy3s23d7qf27s1qz31ppx0n929jynn6n"; depends=[sp]; };
+  diseasemapping = derive2 { name="diseasemapping"; version="1.4.6"; sha256="16y2w8qjq442qdbqlrg3s2mn53rlcipl22m3q168gda5klm4f7sl"; depends=[sp]; };
   diskImageR = derive2 { name="diskImageR"; version="1.0.0"; sha256="1r19k5fdjn6vkn11p5df77fnxfqaz3nciiaai0f3pr2bgpfppzka"; depends=[subplex zoo]; };
   dismo = derive2 { name="dismo"; version="1.1-4"; sha256="1j4pzbyvn8msi3k2y79nc6pqlrald46168ibznjwrr6rdiqhy4gj"; depends=[raster sp]; };
-  dispRity = derive2 { name="dispRity"; version="1.0.3"; sha256="1swix45fcr0hn21pvy2dwsnbr60bvsdjk8vwh432p0s69c372m3l"; depends=[ade4 ape geiger geometry geoscale paleotree phangorn phyclust vegan]; };
+  dispRity = derive2 { name="dispRity"; version="1.2"; sha256="1dihcb5smsjl57562vnm9w63izbzl22vr0ky5far66cxz0y6di2k"; depends=[ade4 ape geiger geometry geoscale mnormt paleotree phangorn phyclust vegan]; };
   disparityfilter = derive2 { name="disparityfilter"; version="2.2.3"; sha256="0dkk3qws631mf0g02di5rsrvh5954cykysyri0g8aqgik0j9dg06"; depends=[igraph]; };
   displayHTS = derive2 { name="displayHTS"; version="1.0"; sha256="0mqfdyvn2c5c3204ykyq29ydldsq0kb3a1d7mrzqr7cvrj1ahlqa"; depends=[]; };
   dispmod = derive2 { name="dispmod"; version="1.2"; sha256="16r6is0pchzc9mxpz0c44f72j76vsh3j9damalcxajrha06dkdq4"; depends=[]; };
@@ -5795,119 +6050,126 @@ in with self; {
   dissUtils = derive2 { name="dissUtils"; version="1.0"; sha256="00fzlmkdfw2s3k824wp2pk3v7cvxnywi1hfp86g4mm95z2qlw9br"; depends=[]; };
   dissever = derive2 { name="dissever"; version="0.2-3"; sha256="1lgs5nmv3lpm4gsryxvcwiwibvvg9flv23q8maisp77x49c18qcp"; depends=[boot caret dplyr foreach magrittr plyr raster sp viridis]; };
   distance_sample_size = derive2 { name="distance.sample.size"; version="0.0"; sha256="0hlf3kp34rg1gnkxp4k3rnv0shv4fpgb0rhx3a6x5692lhyigbcs"; depends=[MASS]; };
-  distances = derive2 { name="distances"; version="0.1.2"; sha256="17872h4jw6cgdk40vczjlygnays2v0wdh64mz5isk7zkvqs0x1ld"; depends=[]; };
+  distances = derive2 { name="distances"; version="0.1.4"; sha256="0axh75s0l478nlgd2sd1nxbmpx0iw1wi5aaa6b24hy1v3bizazbn"; depends=[]; };
   distcomp = derive2 { name="distcomp"; version="1.0-1"; sha256="0f69bxw52ai39dmkmfvrs0lbibcgmv6n849xa9xgd2jm5mvbc58f"; depends=[digest httr jsonlite R6 shiny stringr survival]; };
   distcrete = derive2 { name="distcrete"; version="1.0.3"; sha256="0sa6z2mpmk51ig1r7bmpbyv2jd8z6z7mixki2vlq1kybg8cx3wmi"; depends=[]; };
+  distdichoR = derive2 { name="distdichoR"; version="0.1-1"; sha256="0v19m3n1jgipg65yrv75rm4v27b5aq58cbsmbp7lxvfxmj5ra328"; depends=[boot emmeans nlme sn]; };
   distdrawr = derive2 { name="distdrawr"; version="0.1.3"; sha256="1c8wznfml8k5gwyanfg7rqr22a96xx8rgm7f4z3bv5gsgsbps49y"; depends=[]; };
   distfree_cr = derive2 { name="distfree.cr"; version="1.5.1"; sha256="0h7cywxnasxmqnl9f2f9wp4viwvv72hjx2drr78prqy3nn3lvqwx"; depends=[]; };
   distillery = derive2 { name="distillery"; version="1.0-4"; sha256="1m0pgmlvk7bsb6q3kxagnq422babk61sf73naavac68v8x2q8fix"; depends=[]; };
+  disto = derive2 { name="disto"; version="0.2.0"; sha256="09pafy8y1ifgglqmal32dy34acx06ypsq2bgwsn6fjiqr9kw401j"; depends=[assertthat broom dplyr factoextra fastcluster fastmatch ggplot2 pbapply proxy tidyr]; };
   distory = derive2 { name="distory"; version="1.4.3"; sha256="1mszk8fv1z46d7y1q37mhq9b5yk39w2i9rq6mgdf03afdslrmrip"; depends=[ape]; };
-  distr = derive2 { name="distr"; version="2.6.2"; sha256="1x118v7ycw33mkwy9frw38yn7a6ihghpssz6r2nj5766ab93i89s"; depends=[MASS sfsmisc startupmsg SweaveListingUtils]; };
-  distrDoc = derive2 { name="distrDoc"; version="2.6"; sha256="19yjns5cv2jp551kbld30xmdzljxr0lj5gps0lxfv8d7mrj09kf7"; depends=[distr distrEx distrMod distrSim distrTeach distrTEst MASS RandVar startupmsg SweaveListingUtils]; };
-  distrEllipse = derive2 { name="distrEllipse"; version="2.6.2"; sha256="1rhpnwsml7vs2nkn4q4203fi0qwfc4pxgva0b4z30zzhywb0p3hg"; depends=[distr distrEx distrSim mvtnorm setRNG startupmsg]; };
-  distrEx = derive2 { name="distrEx"; version="2.6.1"; sha256="088a7pvkpndwdg22gmh6ypi5s2fw2gqc47njlvw5gyxfdm9gcdy5"; depends=[distr startupmsg]; };
-  distrMod = derive2 { name="distrMod"; version="2.6.1"; sha256="1i7b08i8zjv2k4p2j1nlqbyjrcapf52k2my83i75hcrjqdy8r3sv"; depends=[distr distrEx MASS RandVar sfsmisc startupmsg]; };
-  distrRmetrics = derive2 { name="distrRmetrics"; version="2.6"; sha256="077ryxl6l6fql81nsl7dm16pawsqd0l6ljfpkrnzjab4mljqaxgp"; depends=[distr fBasics fGarch startupmsg]; };
-  distrSim = derive2 { name="distrSim"; version="2.6"; sha256="1kq85ivnw4mplpr2jmc2w19kvk0d1wffz6laypay2j5gyd8fm44x"; depends=[distr setRNG startupmsg]; };
-  distrTEst = derive2 { name="distrTEst"; version="2.6"; sha256="1c0xwpyr5gs89psiflcz5dplsb1g9r651jiqg8nxcqa05r9kyhkr"; depends=[distrSim setRNG startupmsg]; };
+  distr = derive2 { name="distr"; version="2.7.0"; sha256="0z822y1mj8h368k1iclnaviz6m6wgnl97jwgisb8qah98f4dbmwh"; depends=[MASS sfsmisc startupmsg]; };
+  distrDoc = derive2 { name="distrDoc"; version="2.7.1"; sha256="0zbj550lflq0i7i900cb3ybrcik40ahsjz24yf5jnxvx397glsfx"; depends=[distr distrEx distrMod distrSim distrTeach distrTEst MASS RandVar startupmsg]; };
+  distrEllipse = derive2 { name="distrEllipse"; version="2.7.0"; sha256="0k6jicf8411jzyv9hi63qng9mq6bbil2qgwy7lijgvy2dr4d0niw"; depends=[distr distrEx distrSim mvtnorm setRNG startupmsg]; };
+  distrEx = derive2 { name="distrEx"; version="2.7.0"; sha256="0mhf79fxwvy8x261ckfz93z05f2dn8p70hpdzn47xyh7z8dg38gd"; depends=[distr startupmsg]; };
+  distrMod = derive2 { name="distrMod"; version="2.7.0"; sha256="14c2djk3faw4z1b4fgwpk35qfyvix7b5jcaglc9g6rx43f8h81hp"; depends=[distr distrEx MASS RandVar sfsmisc startupmsg]; };
+  distrRmetrics = derive2 { name="distrRmetrics"; version="2.7.0"; sha256="01z3vm5qfnrp5qd518f7h7dynjjg3am0hrk7zqv8kjzxgsisgnq9"; depends=[distr fBasics fGarch startupmsg]; };
+  distrSim = derive2 { name="distrSim"; version="2.7.0"; sha256="1fihq54kng7icqs6z27rdrykql00c33f0d8cznbizjsz6ipm94d6"; depends=[distr setRNG startupmsg]; };
+  distrTEst = derive2 { name="distrTEst"; version="2.7.0"; sha256="19w92php04fp3c4ip7zz2zs210h4dp9nj3g3ddq26hlh7ng9kk85"; depends=[distrSim setRNG startupmsg]; };
   distrTeach = derive2 { name="distrTeach"; version="2.6.1"; sha256="0x60xlij1m9q7xhi9vnf61vb2px9aah8iqaki6d87c1pxylmqnvr"; depends=[distr distrEx startupmsg]; };
   distrom = derive2 { name="distrom"; version="1.0"; sha256="0wylw7yaylf5j8cy8g45jrw91mwx6w0i7vf9ysnj5kxyznq1gl6y"; depends=[gamlr Matrix]; };
   distrr = derive2 { name="distrr"; version="0.0.4"; sha256="0nywvgcbk2i2n2qa80yk68zikl2fs7nybhq540808rjksldh9pvy"; depends=[dplyr lazyeval magrittr tidyr]; };
+  divDyn = derive2 { name="divDyn"; version="0.6.1"; sha256="04l342jz34q3fcmibdj0zr53w6zp65p3al0w1qd8diq09z1388gc"; depends=[Rcpp]; };
   divagis = derive2 { name="divagis"; version="1.0.0"; sha256="1kcz7i3h9xxpqhlq0rl08pgcwd16ygjjmm0jjv9knn2ggc3j1jzz"; depends=[rgdal sp]; };
   diveMove = derive2 { name="diveMove"; version="1.4.4"; sha256="0mq3nkcn1w8mry9lda6fkycb1a5qmkyzpckwxbrvsyc5kyyx755c"; depends=[caTools geosphere KernSmooth quantreg uniReg]; };
   diveRsity = derive2 { name="diveRsity"; version="1.9.90"; sha256="11pfq3syvjmfwfimjc2jnlprcnynvargr4yjd8h0aa6qzgdrrx5q"; depends=[ggplot2 qgraph Rcpp shiny]; };
   diverse = derive2 { name="diverse"; version="0.1.5"; sha256="10kmx3qv58xhqs1icsxqq0y0cm8y2hx9ysb65brd3hhg33alzvk3"; depends=[foreign proxy reshape2]; };
   diversitree = derive2 { name="diversitree"; version="0.9-10"; sha256="0gh4rcrp0an3jh8915i1fsxlgyfk7njywgbd5ln5r2jhr085kpz7"; depends=[ape deSolve Rcpp subplex]; };
-  divest = derive2 { name="divest"; version="0.6.0"; sha256="0j7glxg2sp1x11mlfrl0fciqp9w6jwf2j7s1sxchaw1b2rm0nklm"; depends=[Rcpp RNifti]; };
+  divest = derive2 { name="divest"; version="0.7.1"; sha256="0ih61l7lncs6lzszwshxnnn9wvpac5zfdaamax9hqkz171zq2gnw"; depends=[Rcpp RNifti]; };
   divo = derive2 { name="divo"; version="1.0.0"; sha256="0xy4yxvx2grskdzb5z73mhgrq0nfhdkm2hxahdns7pb1fgajxyjx"; depends=[cluster]; };
   dixon = derive2 { name="dixon"; version="0.0-6"; sha256="1prvr16a9n7qyaznir2bl7mg6nlvbdv9pk75p3xipzjg36hwyam8"; depends=[spatstat splancs]; };
   dkDNA = derive2 { name="dkDNA"; version="0.1.1"; sha256="0ycyzn5bmhjl5idp0lndffkninpm9n23wrkrzi59ac8z8ghsnhf4"; depends=[]; };
-  dkanr = derive2 { name="dkanr"; version="0.1.1"; sha256="15vvfvhs715aczb0g1prgvynzx0xcmqvq7ancqcjw89al40zaiyc"; depends=[assertthat dplyr httr jsonlite purrr stringr tibble]; };
+  dkanr = derive2 { name="dkanr"; version="0.1.2"; sha256="1936jhj95cqsa6n8yw7zg8hh8m4ld5ajgwb94r5w5w8lfwdficli"; depends=[assertthat dplyr httr jsonlite purrr stringr tibble]; };
   dlib = derive2 { name="dlib"; version="1.0.3"; sha256="1is8j1gwf22n7yixg40rb6p4mrnbzijwfjl6vsniq8qkyy7z8k32"; depends=[Rcpp]; };
   dlm = derive2 { name="dlm"; version="1.1-5"; sha256="1aksm66sfa7ipl5xgs4j5giac7q2m744wjl40mva56xn6i674h4r"; depends=[]; };
   dlmap = derive2 { name="dlmap"; version="1.13"; sha256="0s6wlkggkm3qndwyvw72xv1n0mcjb7ss3ajbq2ll6rv30splq0db"; depends=[ibdreg mgcv nlme qtl wgaim]; };
-  dlnm = derive2 { name="dlnm"; version="2.3.4"; sha256="08k9x29iakgnzf4zbj6bgv6i4812mhbgraxm468wvv8ia574dm1m"; depends=[mgcv nlme tsModel]; };
-  dlookr = derive2 { name="dlookr"; version="0.3.0"; sha256="00yxv2wfprqpsjd4c9q330agy1q3iqi4lnqk8xz62bnqizb0v3hm"; depends=[classInt corrplot DMwR dplyr ggplot2 gridExtra kableExtra knitr magrittr mice moments prettydoc purrr randomForest RcmdrMisc RColorBrewer rlang rmarkdown rpart smbinning tibble tidyr tidyselect tinytex xtable]; };
-  dlsem = derive2 { name="dlsem"; version="2.3"; sha256="1v7p6d2ylpvq69sbgicznmzsfsv08nivgj6dv6lyw7059anilgkn"; depends=[graph gRbase Rgraphviz]; };
+  dlnm = derive2 { name="dlnm"; version="2.3.6"; sha256="0yh964536zh57pcj6q2b172j57pdk4jzf78281jym81j6qxwf2fb"; depends=[mgcv nlme tsModel]; };
+  dlookr = derive2 { name="dlookr"; version="0.3.2"; sha256="0cm48nzj5zbs2db39w9f2gk9wh813ib48hnfhcbp8f833xd5x72n"; depends=[classInt corrplot dbplyr DMwR dplyr ggplot2 gridExtra kableExtra knitr magrittr mice moments prettydoc purrr randomForest RcmdrMisc RColorBrewer rlang rmarkdown rpart smbinning tibble tidyr tidyselect tinytex xtable]; };
+  dlsem = derive2 { name="dlsem"; version="2.4"; sha256="1q4acqlnirr5mk1k4ljzkhmx23a76w7gj98qd3c2s3qlqrsf6xvw"; depends=[graph Rgraphviz]; };
   dlstats = derive2 { name="dlstats"; version="0.1.0"; sha256="0s92rdpw3m534wgjaic4srsp9i1pa3ibfmr4h7p3ly51zhza6l5h"; depends=[ggplot2 jsonlite magrittr RColorBrewer scales]; };
-  dma = derive2 { name="dma"; version="1.3-1"; sha256="0azask61cmkklly32nbpw9rq03v0g976i7shhvawxj20dh4h1jz9"; depends=[MASS mnormt]; };
+  dma = derive2 { name="dma"; version="1.4-0"; sha256="003snr09hazszwqnvjrbv8vyz6ihgcfcfhrlshg451dddn920615"; depends=[MASS]; };
   dml = derive2 { name="dml"; version="1.1.0"; sha256="0z1dalgxh5nhrac49vh60d5awzjylc8b8mn5fk379c324milm59l"; depends=[lfda MASS]; };
-  dmm = derive2 { name="dmm"; version="2.1-4"; sha256="0qwgsv128gqapnc2xi3yas51l9d1gylgs6ww0gc3d8mavlhkz4b1"; depends=[MASS Matrix nadiv pls robustbase]; };
+  dmm = derive2 { name="dmm"; version="2.1-5"; sha256="1i94bsgc12ysivpy9mdmzcdfki1f84x036danki7ynrbym2b3c7a"; depends=[MASS Matrix nadiv pls robustbase]; };
   dmt = derive2 { name="dmt"; version="0.8.20"; sha256="0rwc8l9k2y46hslsb3y8a1g2yjxalcvp1l3v7jix0c5kz2q7917w"; depends=[MASS Matrix mvtnorm]; };
   dmutate = derive2 { name="dmutate"; version="0.1.2"; sha256="06gr49j5jz6ns1zydwsqysgkigi2sbm4hdd2jbb82f05rd9spyf3"; depends=[dplyr MASS]; };
   dna = derive2 { name="dna"; version="1.1-1"; sha256="0gw70h1j67h401hdvd38d6jz71x1a6xlz6ziba6961zy6m3k5xbm"; depends=[]; };
-  dnet = derive2 { name="dnet"; version="1.1.3"; sha256="1av4kbcbhpj1ivz6ln26p80z5fd170971mrcy59zm67h6kdi56az"; depends=[graph igraph Matrix Rgraphviz supraHex]; };
+  dnet = derive2 { name="dnet"; version="1.1.4"; sha256="0xccb50a85d9fcxfg0shxf430hzgjyh4qgb3js4sgzi02iagim58"; depends=[graph igraph Matrix Rgraphviz supraHex]; };
   dng = derive2 { name="dng"; version="0.2.1"; sha256="0yi1fs4yvlsy3j128l7s5kwq8mhdd5fr74y2bzj7cjrxi7wgz2hg"; depends=[Rcpp]; };
-  dnr = derive2 { name="dnr"; version="0.3.2"; sha256="0f5xahd86x196mg7c9zrhxj7c8cg7mrnd4nzyr02xcym6cff6vqm"; depends=[arm ergm glmnet igraph network sna]; };
-  doBy = derive2 { name="doBy"; version="4.6-1"; sha256="1y02awzid23bxz8hx6j8pxd6i7jaq8pdw3k60rag8y6m69incrw5"; depends=[dplyr magrittr MASS Matrix plyr]; };
+  dnr = derive2 { name="dnr"; version="0.3.4"; sha256="0hzaa308pppq2cqpb067f3y3nyv1p2xdmgy3dykf90psnn5v011p"; depends=[arm ergm glmnet igraph network sna]; };
+  doBy = derive2 { name="doBy"; version="4.6-2"; sha256="02vbv9nfgywg6lsiialkmfnax5z3rkyb9nr8j9l2cp8xi6ml95mb"; depends=[dplyr magrittr MASS Matrix plyr]; };
   doFuture = derive2 { name="doFuture"; version="0.6.0"; sha256="04pvs2h1ibdbl6cph30rvdn5vzj9afllvh8f0iy64pgy83vls790"; depends=[foreach future iterators]; };
   doMC = derive2 { name="doMC"; version="1.3.5"; sha256="1vfrykvfvsyq12mypd266867ml1dcwc3rj5k9c3wrn5bddcm88kr"; depends=[foreach iterators]; };
   doMPI = derive2 { name="doMPI"; version="0.2.2"; sha256="0ahwm17p3gq1yvc8v6sr6sb8z7i6zws8d1pf46qynl0gd4amg938"; depends=[foreach iterators Rmpi]; };
-  doParallel = derive2 { name="doParallel"; version="1.0.11"; sha256="0sppgxk3d8mfsrb3cjdyn0mv0s4i7pcy8g8c3cjzbr6k8vmx5jsc"; depends=[foreach iterators]; };
+  doParallel = derive2 { name="doParallel"; version="1.0.14"; sha256="01qjs4iw9f1kgymcypj0m2s4pvgqhxaycpli0fb8lq3dc0vpzfyb"; depends=[foreach iterators]; };
   doRNG = derive2 { name="doRNG"; version="1.7.1"; sha256="1sb75aqkliprglfxc4x4wds6alqgzhvl2n812g1d32a88ra3slr7"; depends=[foreach iterators pkgmaker rngtools]; };
   doRedis = derive2 { name="doRedis"; version="1.1.1"; sha256="10ldfzq6m83b9w24az9bf5wbfm6y9gi233s8qgsk4dnr84n3nizx"; depends=[foreach iterators rredis]; };
   doSNOW = derive2 { name="doSNOW"; version="1.0.16"; sha256="13ir4a8252h4yvp5ir9xnwack1kn58i4ny6sf2qdc12zspn3850n"; depends=[foreach iterators snow]; };
   dobson = derive2 { name="dobson"; version="0.3"; sha256="1vhakkg0276vq0haww5cmm8dbp20bc4874mihqasxkfylqpp6hz2"; depends=[]; };
   docker = derive2 { name="docker"; version="0.0.2"; sha256="00zq4zmv2y6q069q92dn8db2bj96kfy7pv2s58q21dxkp1c4s6qg"; depends=[reticulate]; };
   dockerfiler = derive2 { name="dockerfiler"; version="0.1.1"; sha256="17r8az17vkj46cljp0pa15xh9x2p5w85csm2hickfk2lyg2pbjnx"; depends=[attempt glue R6]; };
-  docopt = derive2 { name="docopt"; version="0.4.5"; sha256="1pwng6018ls0hk785bs8yjwpzsqr2pcvzgpavqd9rw19n5lvzhxn"; depends=[stringr]; };
-  docopulae = derive2 { name="docopulae"; version="0.3.5"; sha256="0k69ca3bjjr9q9v43ds3malwxnldizx0lr62286n0h2idqn63kfa"; depends=[]; };
+  docopt = derive2 { name="docopt"; version="0.6.1"; sha256="06zknnd0c5s2y0hbddzdlr3m63ib783izpck6pgz7sjbab5pd068"; depends=[]; };
+  docopulae = derive2 { name="docopulae"; version="0.4.0"; sha256="186mfiy4ygx6spnv7yrm5h0k6nf2g1xhk1l05iij39j5al5d9j21"; depends=[]; };
   docstring = derive2 { name="docstring"; version="1.0.0"; sha256="19z5frhxbdc5c4vrkckgqbh9mx4d9w1icw8szsw9yadvbg48nlhl"; depends=[roxygen2]; };
   docuSignr = derive2 { name="docuSignr"; version="0.0.3"; sha256="0q90z31svbdnvylfr0yj2f0gahvpi089c1d5llvwqy8qc5p9fbqw"; depends=[httr jsonlite magrittr]; };
   documair = derive2 { name="documair"; version="0.6-0"; sha256="1pphcbx90n9xn8a7gvfrwzfapwqgpbl3gg2grm7chfxgcp7i99i2"; depends=[]; };
-  document = derive2 { name="document"; version="3.0.1"; sha256="1pmms1mrldjqsd2zrmpyxz86xykgq1ld4l4gv9gd1ycd7r8v0f8p"; depends=[callr checkmate desc rcmdcheck roxygen2 rstudioapi withr]; };
-  docxtools = derive2 { name="docxtools"; version="0.1.3"; sha256="0c8harmlil1cqg74a0n2b544gghdl71y0qrcx34yk6ky2f8bl4s3"; depends=[dplyr ggplot2 lubridate magrittr pander purrr rlang stringr tidyr]; };
-  docxtractr = derive2 { name="docxtractr"; version="0.2.0"; sha256="197j57ab8x960b1yfq6xp8fwmq51xs04nf0cb16r161h4bcmgs2j"; depends=[dplyr purrr tibble xml2]; };
-  dodgr = derive2 { name="dodgr"; version="0.0.3"; sha256="161qy9iyszpb44v26zn6w4d7c9bw8pg7vwgqcba0k0xc5dnr2wjc"; depends=[igraph magrittr osmdata rbenchmark Rcpp sp]; };
+  document = derive2 { name="document"; version="3.0.2"; sha256="0p5brpqbgcn1v1i51cvkqq3pg6v256d70zpsc48jj5x7f2mfz3jb"; depends=[callr checkmate desc rcmdcheck roxygen2 rstudioapi withr]; };
+  docxtools = derive2 { name="docxtools"; version="0.2.0"; sha256="0mz71d4hppnp7i67a202x19hcgs99lbslkkfqa2k7npzl4dxj5sr"; depends=[dplyr ggplot2 lubridate purrr rlang stringr tidyr]; };
+  docxtractr = derive2 { name="docxtractr"; version="0.5.0"; sha256="079lm7dbhnwx0aj4df777ws7dmhag2n9f4w17v146rkp2z2l4ym1"; depends=[dplyr httr purrr tibble xml2]; };
+  dodgr = derive2 { name="dodgr"; version="0.1.1"; sha256="187530rrz8ij1wy21zf8drppqh1yml6q01q40b60pzkf1mqp3w5m"; depends=[igraph magrittr osmdata rbenchmark Rcpp RcppParallel sp]; };
   doex = derive2 { name="doex"; version="1.0.0"; sha256="1d70pb0wxc47z401ya2awjpx0rgipicxgbvkhwinx2mg0jpa8kki"; depends=[]; };
   domino = derive2 { name="domino"; version="0.3.1"; sha256="0f67w0z5jy82kgm3l1rji430ayigw30vmmwp3i1nz0xibsx7jxv4"; depends=[]; };
+  doremi = derive2 { name="doremi"; version="0.1.0"; sha256="0qqg0kl806gsidcigwggpx1g5p691b4300dfipiv4cfxp0pl5r1k"; depends=[data_table ggplot2 lme4 lmerTest zoo]; };
   dosresmeta = derive2 { name="dosresmeta"; version="2.0.1"; sha256="0qdalzdk7q4wx3vl5f3i64m8cb7vhi4pqzghar32j0a7l6gla04z"; depends=[mvmeta]; };
   dostats = derive2 { name="dostats"; version="1.3.2"; sha256="15j9sik9j5pic5wrp0w26xkrhi337xkbikw0k7sa4yfimw6f84w5"; depends=[]; };
-  dotCall64 = derive2 { name="dotCall64"; version="0.9-5.2"; sha256="1jw0kyw95nivjimh25ri9sigqwlvk12kd45ydsh1yggigzc0k23k"; depends=[]; };
+  dotCall64 = derive2 { name="dotCall64"; version="1.0-0"; sha256="1b8p7m3w0m7bp977c6jz74xkd611cxg11j49yza59k5fp338scb9"; depends=[]; };
   dotenv = derive2 { name="dotenv"; version="1.0.2"; sha256="13i8dimrgq9nxmmrxr42pacsiylj6dilwpa8ldnrfp4cl9zgrqas"; depends=[]; };
   dotwhisker = derive2 { name="dotwhisker"; version="0.5.0"; sha256="034pvkc59jdjl27wirgb2cv84ajw5y2if20njzzp87nd4f9bb6br"; depends=[broom dplyr ggplot2 ggstance gtable purrr rlang stringr]; };
   doubcens = derive2 { name="doubcens"; version="1.1"; sha256="1hn65n67by3xqbcnaf5jja5pli0g6wpbbz2sfzd7i2nms7kiywhp"; depends=[]; };
+  double_truncation = derive2 { name="double.truncation"; version="1.1"; sha256="03h1km4n8sasc3jdz9gal7yw170b47hgfziz35g9x3qw96lvanpg"; depends=[]; };
   downloader = derive2 { name="downloader"; version="0.4"; sha256="1axggnsc27zzgr7snf41j3zd1vp3nfpmq4zj4d01axc709dyg40q"; depends=[digest]; };
-  downscale = derive2 { name="downscale"; version="2.0-3"; sha256="0jvzvmwhpdr7ygcxky4yl1ldb843hrmnzhmnvl0694mmswwqsf8l"; depends=[cubature minpack_lm raster Rmpfr sp]; };
+  downscale = derive2 { name="downscale"; version="3.0-1"; sha256="0kmv4d5fa6mmhmbfqfxzk1gv55j15d7madsdqi8470bwh0kkya4y"; depends=[cubature minpack_lm raster Rmpfr sp]; };
   downsize = derive2 { name="downsize"; version="0.2.2"; sha256="18b9shd79z0bsdnp0apqqwv6c73j4wnfiv41ywqz761nmxbldxbn"; depends=[magrittr R_utils]; };
   dpa = derive2 { name="dpa"; version="1.0-3"; sha256="0dmwi68riddi1q4b10c12wx6n7pqfmv30ix5x72zpdbgm72v343h"; depends=[igraph sem]; };
   dparser = derive2 { name="dparser"; version="0.1.8"; sha256="1yx425s3iq03j043g41pyfp3cgmajb4qh50zirhd0qpplzwy8xj5"; depends=[digest]; };
-  dpcR = derive2 { name="dpcR"; version="0.4"; sha256="02j7fhhfq7p2wfcnr7rdy65v6dcvdym3nfyps7717p7b429chchc"; depends=[binom chipPCR dgof e1071 evd multcomp pracma qpcR rateratio_test readxl shiny signal spatstat]; };
   dpglasso = derive2 { name="dpglasso"; version="1.0"; sha256="1mx28xbm2z2bxyp33wv2v6vgn1yfsdsa0bzjjdxasgd6lvr51myf"; depends=[]; };
   dplR = derive2 { name="dplR"; version="1.6.8"; sha256="0rgdshkkvij177y7d432wx23ch6f54ns3w93a6fayb1pl936rh7f"; depends=[animation digest lattice Matrix matrixStats plyr png R_utils stringi stringr XML]; };
   dplRCon = derive2 { name="dplRCon"; version="1.0"; sha256="10xnawgnhxp5y949fxs1vvadc1qz2ldy0s9w9w7kf6iqh59d35sw"; depends=[]; };
-  dplyr = derive2 { name="dplyr"; version="0.7.6"; sha256="0c43h13s5mr0fklikbbm89gs6z5n66rkjzdv6w3w6kl5af5wr2fl"; depends=[assertthat BH bindrcpp glue magrittr pkgconfig plogr R6 Rcpp rlang tibble tidyselect]; };
+  dplyr = derive2 { name="dplyr"; version="0.7.7"; sha256="196lwck3i3m25jnn1f1nrda9svnjqqi89s0is79gbrphamddnlq5"; depends=[assertthat BH bindrcpp glue magrittr pkgconfig plogr R6 Rcpp rlang tibble tidyselect]; };
   dplyr_teradata = derive2 { name="dplyr.teradata"; version="0.3.0"; sha256="1yvz1hbczqvvmgkhbvvwkjx56ljqsxry86qk9bn62rdzdvhhpwhx"; depends=[bit64 DBI dbplyr dplyr odbc rstudioapi]; };
   dplyrAssist = derive2 { name="dplyrAssist"; version="0.1.0"; sha256="1lqizh70b1apyr4578917gv6s0i7p84ak96a57kvwipmh36a4ywn"; depends=[DT magrittr miniUI plyr rstudioapi shiny shinyAce shinyWidgets stringr tidyr tidyverse]; };
-  dpmixsim = derive2 { name="dpmixsim"; version="0.0-8"; sha256="0paa2hmpd6bqf0m7p9j7l2h3j18lm64ya6ya8zvp55wm8pf7xgqg"; depends=[cluster oro_nifti]; };
+  dpmixsim = derive2 { name="dpmixsim"; version="0.0-9"; sha256="064i122j8vkpjxzfrhp25kb6nv5j3a7s8qk0202x7vnvj9caqjvx"; depends=[cluster oro_nifti]; };
   dpmr = derive2 { name="dpmr"; version="0.1.9"; sha256="1cnjywkvjb4fhbf4shjmsrq47f1fg2x21hcm1q5512bm0wg9i6jd"; depends=[digest httr jsonlite magrittr rio]; };
   dprint = derive2 { name="dprint"; version="0.0.4"; sha256="13bq6yjlp5p5rcsz684rqcigp42xnz3p5phnqmrhzm874gfzm8rj"; depends=[]; };
   dqrng = derive2 { name="dqrng"; version="0.0.4"; sha256="0qkpyr7gc3m704znfv011l19s8qsnq42rn8p43qsakvndfyqynbb"; depends=[BH Rcpp]; };
   dr = derive2 { name="dr"; version="3.0.10"; sha256="0dmz4h7biwrn480i66f6jm3c6p4pjvfv24pw1aixvab2vcdkqlnf"; depends=[MASS]; };
-  dr4pl = derive2 { name="dr4pl"; version="1.1.1"; sha256="1wh7mdns9vxjkfphj2nqllh7q3k3lch5y0b4yzf3j4xrd0wyf2hm"; depends=[ggplot2 Matrix matrixcalc Rdpack tensor]; };
+  dr4pl = derive2 { name="dr4pl"; version="1.1.7.1"; sha256="17w3ls3g57zs0ibgwsh12f7l47yc4sh13b02n61wf7k5yjaql8yr"; depends=[ggplot2 Matrix matrixcalc Rdpack tensor]; };
   drLumi = derive2 { name="drLumi"; version="0.1.2"; sha256="09ps8rcqrm6a1y8yif2x82l0k4jywq60pkndh9nzfpbsw4ak2lby"; depends=[chron gdata ggplot2 Hmisc irr minpack_lm msm plyr reshape rootSolve stringr]; };
   dragonking = derive2 { name="dragonking"; version="0.1.0"; sha256="01b01wd1s2b8sa9f0kfbf2pbzhaqra7xxskigqh3vlj389xqm1id"; depends=[]; };
   dragulaR = derive2 { name="dragulaR"; version="0.3.1"; sha256="1cw5v7m1b4pxsizsjb3zdzhydxj577p6q5fcjklsvpzmiixzlyav"; depends=[htmlwidgets shiny shinyjs]; };
-  drake = derive2 { name="drake"; version="5.2.1"; sha256="004rxsxzxyc2738p92p4mk68p88pc5n0dynkffr2pmqk50n3wrq6"; depends=[bindr CodeDepends crayon digest dplyr evaluate formatR fs future future_apply igraph knitr lubridate magrittr pkgconfig purrr R_utils R6 rlang rprojroot storr stringi testthat tibble tidyselect txtq visNetwork withr]; };
+  drake = derive2 { name="drake"; version="6.1.0"; sha256="102k3r5c2qdg2avz2frjb1z5i1vwpsr6mx9zcl0n7hiwixn2rxfv"; depends=[codetools digest dplyr evaluate formatR fs future igraph magrittr pkgconfig purrr R_utils R6 rlang storr stringi tibble tidyselect withr]; };
   drat = derive2 { name="drat"; version="0.1.4"; sha256="0vrpqf793vinx4v7jrbn910iplvpmrlwhdjqqzx8cl2k9hl43x08"; depends=[]; };
+  draw = derive2 { name="draw"; version="1.0.0"; sha256="0kbz8rcgygl4fhmljzaan5jl7wjvfljcaykm7q9lw9s6m78p06gz"; depends=[]; };
   drawExpression = derive2 { name="drawExpression"; version="1.0"; sha256="0c2daicqrjlqf7s788cknzvw9c6rm500lgmwfr7z03bq7bd2ah90"; depends=[]; };
   drc = derive2 { name="drc"; version="3.0-1"; sha256="0c8xn8ripzq270hy8d16fcnx02l02alddznd7fqwk3jyi6113h1y"; depends=[car gtools MASS multcomp plotrix scales]; };
-  drfit = derive2 { name="drfit"; version="0.7.1"; sha256="1k2chmhdwd78a5d1pxi3iskzfb4h1fxp51ji72qs73m3i6s2mqpz"; depends=[drc MASS qcc reshape2 RODBC]; };
+  drfit = derive2 { name="drfit"; version="0.7.2"; sha256="03ahzmjzrkdrv36yj6vfg3g5bwn6lb7mlxmli68sixag5h83xq7f"; depends=[DBI drc MASS odbc qcc reshape2]; };
   drgee = derive2 { name="drgee"; version="1.1.6"; sha256="01404mqvkvndn5gybq8dgkfc1cy9wk94p7k7i64h47w3zbkcwsax"; depends=[data_table nleqslv Rcpp RcppArmadillo survival]; };
   driftR = derive2 { name="driftR"; version="1.1.0"; sha256="0mvrmwfqg234kk5klhmw7vmf8i0g485xkx5nk73iam16fbzl9y5g"; depends=[dplyr glue janitor lubridate magrittr readr readxl rlang stringr tibble]; };
   drmdel = derive2 { name="drmdel"; version="1.3.1"; sha256="1bpm9jj9dxk2daxp1yb7pn9jd750p27qa84vdfxpacm5r0mggnys"; depends=[]; };
   dropR = derive2 { name="dropR"; version="0.1"; sha256="0sw5lqlfdn64dbykxdhk1pz18f83if871vkapa2nxgcfiy79b0vs"; depends=[plyr shiny]; };
-  droptest = derive2 { name="droptest"; version="0.1.1"; sha256="065cf0rc2jw83nypjcq3nj37kmdwbaq9yglrvcffy9jcdm804kp9"; depends=[data_table]; };
+  droptest = derive2 { name="droptest"; version="0.1.3"; sha256="1wlfhj6c4pb5mcybyd2bcn55y3azk7dv7d7il97qwbhl8kf59csl"; depends=[data_table]; };
   drsmooth = derive2 { name="drsmooth"; version="1.9.0"; sha256="1wgi961bvbsnq4bygxbpy4sy5fy34lrrkaaj0r2rxcahwa1sc38n"; depends=[boot car DTK lubridate mgcv multcomp pgirmess segmented]; };
   drtmle = derive2 { name="drtmle"; version="1.0.3"; sha256="1b2nlkmx7park79pkmnjnkckli89zh3klfamxkqndgd1s5p0aa11"; depends=[doFuture future future_apply future_batchtools np plyr SuperLearner]; };
   drugCombo = derive2 { name="drugCombo"; version="1.0.2"; sha256="0akb0lszqr9qci9aqwrahhhza1qzdai4w15drccjm399v0csqi0w"; depends=[BIGL Deriv ggplot2 minpack_lm nlme rgl]; };
   ds = derive2 { name="ds"; version="3.0"; sha256="10xp575l0wh85wg32k3as02kgqm9ax9nx9i5kd5bkimfwg4qv745"; depends=[]; };
+  dsa = derive2 { name="dsa"; version="0.60.24"; sha256="0jraxggygsdhsrq98wb88vzfsr60s7i8bnhpz7wirvx2nv3813pg"; depends=[dygraphs extrafont forecast ggplot2 gridExtra htmlwidgets R2HTML reshape2 rJava timeDate tsoutliers xtable xts zoo]; };
   dsample = derive2 { name="dsample"; version="0.91.2.2"; sha256="18c0zxaqwgbn9kmkwlnicwd74ljy2sxj0b9ksif13pdlj3zn57h1"; depends=[MASS]; };
   dse = derive2 { name="dse"; version="2015.12-1"; sha256="1976h57zallhzq43nshg77bsykcvkfwnasha1w59c44fjpl1gs9w"; depends=[setRNG tfplot tframe]; };
-  dslabs = derive2 { name="dslabs"; version="0.3.3"; sha256="1bh6n0s171n6r68fsizz2jryjlj0990bn4rbinl2ln8j17r8lgpf"; depends=[ggplot2]; };
+  dslabs = derive2 { name="dslabs"; version="0.5.1"; sha256="1pzpvgwzgnr3hi9idkkx6ik80bralg5bgnz4b5p24ab5fcr45gy5"; depends=[ggplot2]; };
   dslice = derive2 { name="dslice"; version="1.1.5"; sha256="0qwz9rlgpgx0k28hca2m40ab0qad9rfp1gxswygchv7rcnl4f6ml"; depends=[ggplot2 Rcpp scales]; };
   dsm = derive2 { name="dsm"; version="2.2.16"; sha256="1glw3pwgar9qadjya615n5n10lg7xvclcnr3k9vn8y3fgid22f80"; depends=[ggplot2 mgcv mrds nlme numDeriv plyr statmod]; };
   dsmodels = derive2 { name="dsmodels"; version="1.1.0"; sha256="0gidxi4ph49mjm2hdf9flphfb9916al4cpdkiig504n7ms2sbpbg"; depends=[latex2exp pryr shape]; };
+  dsr = derive2 { name="dsr"; version="0.1.0"; sha256="0iyy0axjbxbhy9hriwgnz96ryb1qvjm1gj62rmi27386ag2knf43"; depends=[dplyr rlang]; };
   dsrTest = derive2 { name="dsrTest"; version="0.2.1"; sha256="1kljlfi7jf6fa8b5f3wxjsa9rlmzcp4qix3m2qyapz2lqd85mbb7"; depends=[asht exactci loglognorm]; };
   dst = derive2 { name="dst"; version="1.0.0"; sha256="0xlrczyw0i3c5hnzflrlw463x9dlmv89m7xlq9xq3krxfsx3qv4z"; depends=[]; };
   dtables = derive2 { name="dtables"; version="0.2.0"; sha256="0ikgip3p4b7q97b2dshlx0fq09xsk304gfk5prw4rk95w9wck3qs"; depends=[psych]; };
@@ -5919,30 +6181,31 @@ in with self; {
   dtt = derive2 { name="dtt"; version="0.1-2"; sha256="0n8gj5iylfagdbaqirpykb01a9difsy4zl6qq55f0ghvazxqdvmn"; depends=[]; };
   dtw = derive2 { name="dtw"; version="1.20-1"; sha256="1w301xwizncy5r8v9rwwdxfshydgp3l1pnjla1fjn6n8lx3imjj3"; depends=[proxy]; };
   dtwSat = derive2 { name="dtwSat"; version="0.2.4"; sha256="1yvl64z3dp4qyii4p8phbk1g1l10q9fbickj0xzzvg2q1xmjps91"; depends=[caret dtw ggplot2 lubridate mgcv plyr proxy raster RColorBrewer reshape2 rgdal scales snow sp xtable zoo]; };
-  dtwclust = derive2 { name="dtwclust"; version="5.4.1"; sha256="17q48hv2zix8jz7znb5pvwq4mrixdyh1rpzmyvj8g0sz62q0h2xc"; depends=[bigmemory clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix nloptr proxy Rcpp RcppArmadillo RcppParallel reshape2 RSpectra shiny shinyjs]; };
-  dub = derive2 { name="dub"; version="0.1.0"; sha256="0sdk8sppjcfx2bsngpngm2446warsnipzzw4yz5z4jpickp52ay0"; depends=[]; };
+  dtwclust = derive2 { name="dtwclust"; version="5.5.1"; sha256="12wz5pzmafq3vzfr5bm6kkqfn2fg9qb7z0c5csn9r1w8ijidsyg4"; depends=[bigmemory clue cluster dplyr dtw flexclust foreach ggplot2 ggrepel Matrix nloptr proxy Rcpp RcppArmadillo RcppParallel reshape2 RSpectra shiny shinyjs]; };
+  duawranglr = derive2 { name="duawranglr"; version="0.6.3"; sha256="0swvrdwnbyigsvds3s32nw79b245q3cgv7xskjx7qjcpnvzr7x7q"; depends=[digest dplyr haven readr readxl]; };
+  dub = derive2 { name="dub"; version="0.2.0"; sha256="066lzyk44380mf17vx4db4a3a4rs7zl85mj5hjg172khjbqnbixw"; depends=[]; };
   duckduckr = derive2 { name="duckduckr"; version="1.0.0"; sha256="1wki8xvqp5hr27iafd9jbryl9faywfkdkpn0pa0afywbic39k2cm"; depends=[crul jsonlite]; };
   dummies = derive2 { name="dummies"; version="1.5.6"; sha256="01f84crqx17xd6xy55qxlvsj3knm8lhw7jl26p2rh2w3y0nvqlbm"; depends=[]; };
   dummy = derive2 { name="dummy"; version="0.1.3"; sha256="081a5h33gw6ym4isy91h6mcf247c2vsdygv9ll07a3mgjcjnk79p"; depends=[]; };
   dunn_test = derive2 { name="dunn.test"; version="1.3.5"; sha256="0lqwvyl3pyygfc73nf81gzw3zl3w43r7ki0yw2dgrzhkpb2iji4a"; depends=[]; };
   dupiR = derive2 { name="dupiR"; version="1.2"; sha256="0p649yw7iz6hnp7rqa2gk3dqkjbqx1f6fzpf1xh9088nbf3bhhz3"; depends=[plotrix]; };
   dvmisc = derive2 { name="dvmisc"; version="1.1.2"; sha256="1dy0yykskwhkql19bhzmbwsgv028afc8jh9yqwbczj6f3vpv31zh"; depends=[MASS rbenchmark Rcpp]; };
-  dwapi = derive2 { name="dwapi"; version="0.1.3"; sha256="149v1yjnrdbqjg7cpnanm1jv1dcpzqy264qk5dx8wvw9kdc5h3b8"; depends=[httr jsonlite readr rjson xml2]; };
+  dwapi = derive2 { name="dwapi"; version="0.1.3.1"; sha256="1sz4n8vn7cmlilxzhkm4rdfca0904cbh28n5383p9pr46bdi69q5"; depends=[httr jsonlite readr rjson xml2]; };
   dyads = derive2 { name="dyads"; version="1.1"; sha256="0jlyg4bz3zp4g5ig0swwi72bxaj85wll05h6vishnvmnprpdc96n"; depends=[MASS mvnfast]; };
-  dygraphs = derive2 { name="dygraphs"; version="1.1.1.5"; sha256="0bfpna7gijnfvf40fm4dhb63lf2x6n91d0ym3w936s6xiyc3ah17"; depends=[htmltools htmlwidgets magrittr xts zoo]; };
+  dygraphs = derive2 { name="dygraphs"; version="1.1.1.6"; sha256="022j007mzfa9k2n31yg4aizcsf571vv3jip092h23rqj03rk3ly3"; depends=[htmltools htmlwidgets magrittr xts zoo]; };
   dyn = derive2 { name="dyn"; version="0.2-9.6"; sha256="16fqv9k7yxdgybwzafjkyqm16qpgqz13lcjpi6a1nc8xbzlzh0gb"; depends=[zoo]; };
   dynBiplotGUI = derive2 { name="dynBiplotGUI"; version="1.1.5"; sha256="0fvyn33mzjcc3sis05phc6412y25m406il2wzdfw8caa8dafj0yw"; depends=[tcltk2 tkrplot]; };
   dynCorr = derive2 { name="dynCorr"; version="1.1.0"; sha256="0l5k764j1zhsqpgp0ndihah63hsk3zv9hviixfmh4h3i0sr0q52p"; depends=[lpridge]; };
   dynOmics = derive2 { name="dynOmics"; version="1.2"; sha256="0fsck5wx4rcfckjr6xg0s3a6cvh4881cqzy0af91icqg0p3zjj2l"; depends=[ggplot2 gplots]; };
-  dynRB = derive2 { name="dynRB"; version="0.11"; sha256="0xki395r1biasbpg0dp0daql44zszs2d3sb7q08ypcp529c9v40y"; depends=[caTools corrplot ggplot2 RColorBrewer reshape2 vegan]; };
+  dynRB = derive2 { name="dynRB"; version="0.13"; sha256="04axc6hzwaclgdyl5lplihgbg6ip8irpiyanghfhhid3c4jm03r7"; depends=[corrplot ggplot2 RColorBrewer reshape2 vegan]; };
   dynaTree = derive2 { name="dynaTree"; version="1.2-10"; sha256="1ng672mlv98xnsbd4xq70hxc8j158la4n63y46rw74granaz29ya"; depends=[]; };
   dynamac = derive2 { name="dynamac"; version="0.1.4"; sha256="1gsqgwqamfa8zvl01zsjmbsn7q73m4aii6gzb5khppw244qjgw8y"; depends=[lmtest MASS]; };
   dynamicGraph = derive2 { name="dynamicGraph"; version="0.2.2.6"; sha256="1xnsp8mr3is4yyn0pyrvqhl893gdx2y1zv8d2d55aah2xbfk0fjj"; depends=[ggm]; };
   dynamicTreeCut = derive2 { name="dynamicTreeCut"; version="1.63-1"; sha256="1fadbql7g5r2vvlkr89nlrjxwp4yx4xrdqmv077qvmnx9vv0f4w3"; depends=[]; };
-  dynamichazard = derive2 { name="dynamichazard"; version="0.5.3"; sha256="1ggz3i4l5p23gkk0mvfgkiv9q8gmnamjyss8kz5i870ymwnxya09"; depends=[boot Rcpp RcppArmadillo survival]; };
+  dynamichazard = derive2 { name="dynamichazard"; version="0.6.1"; sha256="0xwvfpw0djnzi4igim8g32s233f5xf53pskg5w4xwnqja7x6w8v2"; depends=[boot Rcpp RcppArmadillo survival]; };
   dynamo = derive2 { name="dynamo"; version="1.0"; sha256="0arsv686ix7xpca57ayqgifim1q35dl4w2mx7fw8bc0lidapilyp"; depends=[abind glamlasso MortalitySmooth Rcpp RcppArmadillo]; };
   dynatopmodel = derive2 { name="dynatopmodel"; version="1.2.1"; sha256="0lpfhj69bvagqzzg2kjqvn9xx8f93ii34flrrns20z3bxla6gds9"; depends=[deSolve lubridate maptools raster rgdal rgeos sp topmodel xts zoo]; };
-  dyncomp = derive2 { name="dyncomp"; version="0.0.1-5"; sha256="1626z5523s4igw55fw97lplfgg9mzf4np8imrarkligslvc5q8ip"; depends=[zoo]; };
+  dyncomp = derive2 { name="dyncomp"; version="0.0.2-1"; sha256="13wp2k8nbgrbrqng2dmgy0ixgidk51wq9y7mv5pdbvdajxdsyh11"; depends=[zoo]; };
   dynetNLAResistance = derive2 { name="dynetNLAResistance"; version="0.1.0"; sha256="018y3m648ni31rlisjfnrx1d10mm48wpxanlnnxxpnqxjcywg2x8"; depends=[doParallel foreach igraph]; };
   dynfrail = derive2 { name="dynfrail"; version="0.5.2"; sha256="1q7ml24j0ycy2bwpa14vl96315ni7x9rfp0qmf36w00mylgc3ry6"; depends=[dplyr magrittr Rcpp RcppArmadillo survival tibble tidyr]; };
   dynia = derive2 { name="dynia"; version="0.2"; sha256="1swip4kqjln3wsa9xl0g92zklqafarva923nw7s44g4pjdy73d5l"; depends=[]; };
@@ -5950,29 +6213,29 @@ in with self; {
   dynpanel = derive2 { name="dynpanel"; version="0.1.0"; sha256="073kfl5g4d7v8wd2qnpixqrxbac3cqj35z03ax2zlb8h2afa7j62"; depends=[gtools]; };
   dynpred = derive2 { name="dynpred"; version="0.1.2"; sha256="111ykasaiznn3431msj4flfhmjvzq7dd1mnzn1wklc5ndix1pvf9"; depends=[survival]; };
   dynprog = derive2 { name="dynprog"; version="0.1.0"; sha256="1rvn2zyhdi60y01zbvfv4him6iz2ljdr7ivkr7m7y7yd1lg547ax"; depends=[rlang]; };
-  dynr = derive2 { name="dynr"; version="0.1.12-5"; sha256="1l9waqwg5mkqy8ipryickrkf141mjpzdvsc4qbw8bq4rkrgykklc"; depends=[ggplot2 latex2exp magrittr MASS Matrix mice numDeriv plyr Rdpack reshape2 xtable]; };
+  dynr = derive2 { name="dynr"; version="0.1.13-4"; sha256="11qs6zj73y8x1pvlnq09f1sapdg9b933a45il0p8w23zj1232205"; depends=[ggplot2 latex2exp magrittr MASS Matrix mice numDeriv plyr Rdpack reshape2 xtable]; };
   dynsbm = derive2 { name="dynsbm"; version="0.5"; sha256="01vi4qzgp25l4wg2ij9pqrn775x4yj9gck0l397nwjg96pa7x2lz"; depends=[RColorBrewer Rcpp riverplot]; };
   dynsim = derive2 { name="dynsim"; version="1.2.1"; sha256="0nkxn9v4f353fhcn1vsdrh29mrms10zid63b84flg3c6hvc0x4qr"; depends=[ggplot2 gridExtra MASS]; };
   dynsurv = derive2 { name="dynsurv"; version="0.3-6"; sha256="12bfv6bykgsyxryydhjs89yvk7akam5gy89mzn1hv4ilrpc5mlmw"; depends=[BH ggplot2 nleqslv plyr reshape survival]; };
-  dynutils = derive2 { name="dynutils"; version="0.1.0"; sha256="0fr9gnsafi02ydmp84kv8lq6q4mcf4sg1izgd4h1s1ljvgwq3yqp"; depends=[crayon desc devtools dplyr glue magrittr processx purrr Rcpp stringr testthat tibble tidyr]; };
-  e1071 = derive2 { name="e1071"; version="1.6-8"; sha256="08n6i26nfckjpxjkzi8phhanc3ahsrirkv5rz38y2jcv7ds031pn"; depends=[class]; };
+  dynutils = derive2 { name="dynutils"; version="1.0.0"; sha256="182k67zkn1gq91h405f0csw71qs5apf92ddrbh8274nmar8hnha4"; depends=[crayon desc devtools dplyr glue magrittr processx purrr Rcpp stringr testthat tibble tidyr]; };
+  e1071 = derive2 { name="e1071"; version="1.7-0"; sha256="0fk4pw67cw1663d0n9rf1qfdqzz8k5nqkjgp3hi5jr422qp9lsck"; depends=[class]; };
   eAnalytics = derive2 { name="eAnalytics"; version="0.1.3"; sha256="1lrkmfs2sq9p2n7g528jf6wxixqk08w468nckkij2mprhrccjjj6"; depends=[dplyr DT energyr googleVis leaflet plotly shiny shinydashboard]; };
   eChem = derive2 { name="eChem"; version="1.0.0"; sha256="0wmf204hqd4s5har5l9bkcbrbmbqbb8m11w2aivi2gs98f3hy51p"; depends=[animation plot3D]; };
-  eDMA = derive2 { name="eDMA"; version="1.5-1"; sha256="0yhywv6bfb1pb6rxkw484kf2knnqar407v5khhs023kdjb01iy8q"; depends=[Rcpp RcppArmadillo xts zoo]; };
+  eDMA = derive2 { name="eDMA"; version="1.5-3"; sha256="0wyp81si6lcispqng4c7lii22qbyblvijgnlxvcsnkcxj5hpm76j"; depends=[Rcpp RcppArmadillo xts zoo]; };
   eHOF = derive2 { name="eHOF"; version="1.8"; sha256="0g0sb98mlgvhs27s0a1x0ysj3r4p3r7i382fqzfv29kn1ayw0r5c"; depends=[lattice mgcv]; };
-  eLNNpaired = derive2 { name="eLNNpaired"; version="0.2.3"; sha256="08nck2p5npyw264kgcqmgx5rx7c3h9v892f90xlcd1dnb7dqlan3"; depends=[Biobase globaltest GSEAlm iCheck samr]; };
   eMLEloglin = derive2 { name="eMLEloglin"; version="1.0.1"; sha256="087zw48lykls2jcsmpqd5jkrlpr0j423snp00liszjhdpdh59saq"; depends=[lpSolveAPI]; };
   eNetXplorer = derive2 { name="eNetXplorer"; version="1.0.1"; sha256="196m8cbd95pc8w03n0nxc625mxwpqpcw3lc3cbrvpzaljmfhqn2v"; depends=[calibrate glmnet gplots Matrix progress RColorBrewer]; };
   ePCR = derive2 { name="ePCR"; version="0.9.9-6"; sha256="1q46njiqasrma9vr8p7m9ndwag53aavbg4l7a4shgys3w862m7kc"; depends=[Bolstad2 c060 glmnet hamlet impute MASS Matrix pracma ROCR survival timeROC]; };
-  eRm = derive2 { name="eRm"; version="0.16-1"; sha256="1wyzqhka7k4a4xclicc098zgi0y2fbx4fray144qx1pyaa8p8075"; depends=[lattice MASS Matrix]; };
+  eRm = derive2 { name="eRm"; version="0.16-2"; sha256="0cfd8j8d1x33g77vyc29xd2qjwq7bsqh8c8kvcr02vi1rq3kkvkv"; depends=[lattice MASS Matrix]; };
   eaf = derive2 { name="eaf"; version="1.8"; sha256="1plzvfa2vs3njky7xk9dvic2xapdnzb5iycrksv0qj03ylbh6410"; depends=[modeltools]; };
   earlyR = derive2 { name="earlyR"; version="0.0.1"; sha256="14davqhh3n5dfsddnfd79ni56bssrpwhvkqkdb77a8x9fn8w32pv"; depends=[distcrete EpiEstim epitrix]; };
+  earlygating = derive2 { name="earlygating"; version="1.0"; sha256="0y6xjkh9p8bvanc9p5sycah8v81k85xr8i7vyvjb9g4a64srwhd7"; depends=[betareg doParallel foreach]; };
   earlywarnings = derive2 { name="earlywarnings"; version="1.0.59"; sha256="06j5g5lrzl4p5pb1pp79h00iqpbwralzhpzxmaiymv7j8kz87nr0"; depends=[fields ggplot2 Kendall KernSmooth lmtest moments nortest quadprog som spam tgp tseries]; };
   earth = derive2 { name="earth"; version="4.6.3"; sha256="0af02qi3np40p90v0npnwqa5dg2zszky6kjx9zjw7id7jw5kx1m6"; depends=[plotmo TeachingDemos]; };
   earthtones = derive2 { name="earthtones"; version="0.1.0"; sha256="1phl50bgd40i36fdkfs9xkqm703vgwxlnpyik6lk8ssip0m4rn9j"; depends=[ggmap]; };
   easyAHP = derive2 { name="easyAHP"; version="0.1.1"; sha256="161mn90j9ph1p9277mj61hch8ndcv7k9izs32q93y5wp474gzynd"; depends=[]; };
-  easyCODA = derive2 { name="easyCODA"; version="0.23"; sha256="0mik051b34p66a2ipwi512926wl5r1zdqhdam68cr13sar2c0cbq"; depends=[ca]; };
-  easyDes = derive2 { name="easyDes"; version="3.0"; sha256="1z4ynd1ck2vxsshygjgnhyzg8i41kpnwsfix96nmgwm3861n0phb"; depends=[multcomp PMCMR]; };
+  easyCODA = derive2 { name="easyCODA"; version="0.25"; sha256="079vj7gxbpqcx7jjk6vfv13ng23jglsq1x88i71qvqlqp9vkvs87"; depends=[ca vegan]; };
+  easyDes = derive2 { name="easyDes"; version="4.0"; sha256="1lfkkkwlj444md7xp2zzx0ai976yxq6xp3v2a42pwgzs1fcafwal"; depends=[multcomp PMCMRplus]; };
   easyNCDF = derive2 { name="easyNCDF"; version="0.0.4"; sha256="1hd7b6pdm5j41a4v0jxhbqdy2bz5gj86fsfwj0l7gg7h32d6hkhq"; depends=[abind ncdf4]; };
   easyPubMed = derive2 { name="easyPubMed"; version="2.5"; sha256="08b94pcya9bmnsipd1jn95dpadw2aqb0fnvm68n11mwg40hd272j"; depends=[XML]; };
   easySVG = derive2 { name="easySVG"; version="0.1.0"; sha256="03gl5gl0yqgpygd4kna79wrhflbnq3zrz3iq2i8hk9xqd83mszh3"; depends=[]; };
@@ -5984,30 +6247,31 @@ in with self; {
   easynls = derive2 { name="easynls"; version="5.0"; sha256="1ma2q4y5dxk6q99v880vqfsgy1fha96j7pi8ch699l0pi6bx0d6c"; depends=[]; };
   easypackages = derive2 { name="easypackages"; version="0.1.0"; sha256="00paxdwz4bw3imqhcsw6hj1h0gmnpishlxcj79n826vhdy23jc4y"; depends=[assertthat devtools]; };
   easypower = derive2 { name="easypower"; version="1.0.1"; sha256="1vf0zv55yf96wjxja6ifdjvgc9nw0jl0hnc1ygyjd8pmwbgdz9bl"; depends=[pwr]; };
-  easyreg = derive2 { name="easyreg"; version="1.0"; sha256="01wpqr2vfa245xln1zmqr1a9bibj0cnx60bw24l1q1li7r13wjyy"; depends=[car nlme]; };
+  easyreg = derive2 { name="easyreg"; version="2.0"; sha256="0qxcrgcc306g4i2wnph94wa7sj06mqxi96cvbpnk9mi46ps0l1kw"; depends=[car nlme]; };
   ebGenotyping = derive2 { name="ebGenotyping"; version="2.0.1"; sha256="1jllzc7kvvckrws8qhgvwy626llyb68sp1davp7swx48sf7rwcxc"; depends=[]; };
   ebSNP = derive2 { name="ebSNP"; version="1.0"; sha256="0x3ijwg4yycsfy6jch1zvakzfvdgpiq8i7sqdp5assb8z1823w0b"; depends=[]; };
-  eba = derive2 { name="eba"; version="1.7-2"; sha256="00hlmnknif9yr4wzw0n1fzkrgbciv7ljc0gkfq34v3vvy3dmdsvq"; depends=[nlme]; };
+  eba = derive2 { name="eba"; version="1.8-0"; sha256="0241l0vf1791vxkahxlf9d2bd1073hyl0nfmccafzaa0k76z369w"; depends=[nlme]; };
   ebal = derive2 { name="ebal"; version="0.1-6"; sha256="1cpinmbrgxxv0fzi9qi2inv4hw2lz7iq4b0ggp316rdqqb5bj9r0"; depends=[]; };
   ebdbNet = derive2 { name="ebdbNet"; version="1.2.5"; sha256="0kal4sqx12y04696ilwnwkmss4rn16dkbnalgqimz6i4jhz8n23h"; depends=[igraph]; };
-  ebimetagenomics = derive2 { name="ebimetagenomics"; version="0.3"; sha256="1nvdpgq88yf7a89qy896wc1h7afjwj90jdbpm144fn12b2pba0a7"; depends=[breakaway sads vegan]; };
+  ebimetagenomics = derive2 { name="ebimetagenomics"; version="0.6"; sha256="0jaz7l71pnf3i2q83mx0pjqli9sn30a4b9vshcmp70v3h6xdj9wx"; depends=[breakaway sads vegan]; };
   ebmc = derive2 { name="ebmc"; version="1.0.0"; sha256="0v9hkzy8ljddmi6wdjd1jga4ib566ikr1vgrvxba67ka524r6bbp"; depends=[C50 DMwR e1071 pROC randomForest rpart]; };
   ecb = derive2 { name="ecb"; version="0.2"; sha256="17hj4d48j6rran64ajzlgkgz17mab51fa3lz8rm3mw0qhahkjlmc"; depends=[curl httr rsdmx xml2]; };
   ecd = derive2 { name="ecd"; version="0.9.1"; sha256="0d8mf5q6n7k5qj6kxvrb3habl0qmn2rxv814kydkrz2bg0scvm1q"; depends=[digest ggplot2 gridExtra gsl moments optimx polynom RcppFaddeeva Rmpfr RSQLite stabledist xtable xts yaml zoo]; };
   ecdfHT = derive2 { name="ecdfHT"; version="0.1.1"; sha256="1n3n9n86pj8c54l3xvp7knvi0ajbnjmz9pi79p7wfq92a90fqx48"; depends=[rgl]; };
   ecespa = derive2 { name="ecespa"; version="1.1-10"; sha256="1n6wvz463w0ainn9a52arjhs5q9pwciknb5328pr6y287fwa3nnn"; depends=[spatstat]; };
-  echo_find = derive2 { name="echo.find"; version="1.1.1"; sha256="074qk22dsz29w88ydrwshjzzhrh86wyyjiiwiahq4ns5m64szw7n"; depends=[minpack_lm]; };
+  echarts4r = derive2 { name="echarts4r"; version="0.1.1"; sha256="0vknh2s5ifk3nk66v7klgwkmlhk0aji7vrl18vad0x0jgkzayyvv"; depends=[base64enc broom countrycode crosstalk d3r data_tree dplyr htmlwidgets magrittr purrr]; };
+  echo_find = derive2 { name="echo.find"; version="1.3.1"; sha256="1z21pcl8kfxrikcghkgwa7flqv3jh3sgdaips64m26i9r9lp5kc5"; depends=[minpack_lm]; };
   echogram = derive2 { name="echogram"; version="0.1.1"; sha256="0f93s9f1ghin8129vb3bvsp7jmy2hfrx97p86hci8b2y4f7b83qh"; depends=[geosphere readHAC]; };
-  echor = derive2 { name="echor"; version="0.1.0"; sha256="0242yk02qkcfrivxc3zgaw3awmj4b6ra38h1gg21795yrpzcyv02"; depends=[dplyr httr jsonlite lubridate purrr sf tibble tidyr]; };
+  echor = derive2 { name="echor"; version="0.1.1"; sha256="1mc0qng9nqkvbpyklhf0a0fpgww8x88cgb29gmf1v7zycs1ch1m9"; depends=[dplyr geojsonsf httr lubridate plyr purrr readr tibble tidyr]; };
   ecipex = derive2 { name="ecipex"; version="1.0"; sha256="0pzmrpnis52hvy80p3k60mg9xldq6fx8g9n3nnqi3z56wxmqpdv7"; depends=[CHNOSZ]; };
   eclust = derive2 { name="eclust"; version="0.1.0"; sha256="01x327w02m357lngmgv3drni2s67sass25xk9vni1z434n8i4428"; depends=[caret data_table dynamicTreeCut magrittr pacman pander stringr WGCNA]; };
-  ecm = derive2 { name="ecm"; version="4.0.0"; sha256="09678l6sh61f51jfpmkk4bkxind8jdn6izw6bizshr1bvk8lapjc"; depends=[car]; };
+  ecm = derive2 { name="ecm"; version="4.3.0"; sha256="0nck8hfiqpkq8wm2jrzxi12aq9pnq58wgaizygdqf2m40bjz47gv"; depends=[car]; };
   eco = derive2 { name="eco"; version="4.0-1"; sha256="08fblbr9qp2v0cp69hy68c18xjqvx0nsnx42n2vd1gc6r7apapj6"; depends=[MASS]; };
   ecodist = derive2 { name="ecodist"; version="2.0.1"; sha256="04piv52b4b9rgv1gy6s3b1lzapc0rqiwp1yi7f8yzgjd9329kc5g"; depends=[]; };
   ecoengine = derive2 { name="ecoengine"; version="1.11.0"; sha256="1d5x6hvqrqjj0wg07m4dbgb9ljdq73ibavzy2q5magnfn50a7rzm"; depends=[assertthat data_table dplyr httr jsonlite lubridate magrittr plyr whisker]; };
   ecolMod = derive2 { name="ecolMod"; version="1.2.6"; sha256="1n30faldfhpm2jkaw793vr220kgn3bmn8hxhw32rax294krmwn4v"; depends=[deSolve diagram rootSolve shape]; };
   ecolottery = derive2 { name="ecolottery"; version="1.0.0"; sha256="0w5aq1aaqzz74vlj8hgnmn60l8rdrchx022dpspqnpvpzdlh65z5"; depends=[abc ggplot2]; };
-  econet = derive2 { name="econet"; version="0.1.6"; sha256="1izb7ssb5a5r5qky3jzyp2j5p1qlhq7vhl8nhz2xhkiks8xgf4xg"; depends=[bbmle dplyr igraph intergraph MASS Matrix minpack_lm plyr sna spatstat_utils tnet]; };
+  econet = derive2 { name="econet"; version="0.1.7"; sha256="0pvr9bv4ix5xvr0hg61j1iizdi2n5vs8widl91cj1ci90g52dvrk"; depends=[bbmle dplyr igraph intergraph MASS Matrix minpack_lm plyr sna spatstat_utils tnet]; };
   econullnetr = derive2 { name="econullnetr"; version="0.1.0"; sha256="0l4qy7x8f8sjc3s1bhz3kadfqifw0x9jl7dvcjwkh9q14h093cz5"; depends=[bipartite gtools reshape2]; };
   ecoreg = derive2 { name="ecoreg"; version="0.2.2"; sha256="1yzyqvhshgc7ip251y7hsvip4xwf8i92bvvz84mn0mzv5b4mq3im"; depends=[]; };
   ecoseries = derive2 { name="ecoseries"; version="0.1.5"; sha256="1q35hp5hl6z28hns5rnp3mjn6hqp5qh714pagw7fw4d4a6wnvacy"; depends=[magrittr RCurl readr rjson rvest tibble xml2 zoo]; };
@@ -6016,9 +6280,10 @@ in with self; {
   ecospat = derive2 { name="ecospat"; version="3.0"; sha256="1c9cbxs022f2bjnvgdfxhmqkzr30svna596r1fn5i7zsqd7dm0w6"; depends=[ade4 adehabitatHR adehabitatMA ape biomod2 classInt dismo doParallel ecodist foreach gbm gtools iterators maptools MigClim poibin PresenceAbsence randomForest raster rms snowfall sp spatstat vegan]; };
   ecotox = derive2 { name="ecotox"; version="1.3.2"; sha256="12nng1v73lshcy99hqrp5a1qy052z0cz5n97bq7fla7zc4is69y5"; depends=[ggplot2 magrittr]; };
   ecotoxicology = derive2 { name="ecotoxicology"; version="1.0.1"; sha256="084xkr59d7x9zxmsnsyym2x8jshz6ag6rvnmhd1i6fzar8ypwccb"; depends=[]; };
-  ecoval = derive2 { name="ecoval"; version="1.2"; sha256="098n31py05f0ram733jdc85ki3fcpjc40yn7wsi7g74jyhdb1qms"; depends=[jpeg rivernet utility]; };
+  ecoval = derive2 { name="ecoval"; version="1.2.1"; sha256="0dm2vqk5hgs4dh9ms10srjjblk09sidn7m06r714h1vswcd7bphs"; depends=[jpeg rivernet utility]; };
   ecp = derive2 { name="ecp"; version="3.1.0"; sha256="0siq5acpy4wmqzm6zvpqj1m8a05hgk5jhb1clv06y40kqk5kjrap"; depends=[Rcpp]; };
   ecr = derive2 { name="ecr"; version="2.1.0"; sha256="0vvkdxlcqaim9mkgwgdxrx1xhw3lshi1nxfw3kqllq14p3l6xss4"; depends=[BBmisc checkmate ggplot2 parallelMap ParamHelpers reshape2 smoof]; };
+  ectotemp = derive2 { name="ectotemp"; version="0.1.1"; sha256="1gnlbd7h1jf5mryi9mdpbj521vbsj00jd4bc26rqj70wm54nn3p9"; depends=[dplyr psych]; };
   eda4treeR = derive2 { name="eda4treeR"; version="0.2.0"; sha256="0fh6nfgvbkvjm1f0b292ggi0mr8ylq5pg2wp8cph46j8rhbgbdxz"; depends=[dae dplyr emmeans ggplot2 lme4 magrittr pbkrtest tidyverse]; };
   edarf = derive2 { name="edarf"; version="1.1.1"; sha256="0f27hs7vn4v2jis3d66s48hr0ki8m8ndspcw1cwns5vjwb77iqwm"; depends=[data_table ggplot2 mmpf]; };
   edcc = derive2 { name="edcc"; version="1.0-0"; sha256="036fi6mnn9480hkb378xb5jilkfvdydjmkyw4mcc9s1lz195f62w"; depends=[spc]; };
@@ -6046,11 +6311,11 @@ in with self; {
   eegkitdata = derive2 { name="eegkitdata"; version="1.0"; sha256="1krsadhamv1m8im8sa1yfl7injvrc4vv3p88ps1mpn8hibk5g51m"; depends=[]; };
   eel = derive2 { name="eel"; version="1.1"; sha256="0cv6dhw57yy140g73z94g9x1s42fpyfliv9cm2z1alm7xwap1l0x"; depends=[emplik rootSolve]; };
   eemR = derive2 { name="eemR"; version="0.1.5"; sha256="13c5k2si8aq2461iz9413hlqzgkb25zrdfvizzk8s2nn60npyaw9"; depends=[dplyr pracma R_matlab readr rlist stringr viridis]; };
-  eeptools = derive2 { name="eeptools"; version="1.2.0"; sha256="14cmvshalfvh1zd1gp2dsp42kjxw2pdfixwlk9zvlw7ncx9y83j3"; depends=[arm data_table ggplot2 maptools vcd]; };
+  eeptools = derive2 { name="eeptools"; version="1.2.1"; sha256="0idrwh6khz1sbslx35kmm6f79njam0xl48r3aiy70p2l569rj89h"; depends=[arm data_table ggplot2 maptools vcd]; };
   eesim = derive2 { name="eesim"; version="0.1.0"; sha256="0ljj1jp9cl0im8k7sfjd28ggj4q9a14df3554kwxkssr1vsn1wbc"; depends=[dplyr lubridate purrr viridis]; };
   effectFusion = derive2 { name="effectFusion"; version="1.0"; sha256="1nx61n4lgnj6wh4arqm62p9xwxqvz4g7bs4b5k3ybkhmh6ns9v5l"; depends=[bayesm cluster ggplot2 MASS Matrix]; };
-  effectR = derive2 { name="effectR"; version="1.0.1"; sha256="11kqp0si5jm3ffw7d1kq5b6qwdzwijdp1n2hv8a3fa5vppkp43ws"; depends=[ggplot2 reshape2 seqinr shiny viridis]; };
-  effects = derive2 { name="effects"; version="4.0-2"; sha256="10anvrn5v04i985d06fxv099970vvjllms7iwpbpa488zv5k9b81"; depends=[carData colorspace estimability lattice lme4 nnet survey]; };
+  effectR = derive2 { name="effectR"; version="1.0.2"; sha256="1icr1sx98x3h8rbky1agdh809arhjqcypyajl7y50yis8a5pkycb"; depends=[ggplot2 reshape2 rmarkdown seqinr shiny viridis]; };
+  effects = derive2 { name="effects"; version="4.0-3"; sha256="1riwc3z7h1h08nfkiv2fymllnbqqsdgaq7asla77ygm5hiqd435y"; depends=[carData colorspace estimability lattice lme4 nnet survey]; };
   effectsizescr = derive2 { name="effectsizescr"; version="0.1.0"; sha256="0shfjk6r3bz04jakrn5nwgymjx60lk83i0akcx7zqfxp3k8yncs5"; depends=[Kendall]; };
   efflog = derive2 { name="efflog"; version="1.0"; sha256="1sfmq7xrr6psa6hwi05m44prjcpixnrl7la03k33n0bksj8r1w6b"; depends=[]; };
   effsize = derive2 { name="effsize"; version="0.7.1"; sha256="0l0ja7qcknn8r5hf7nrjk5cy0ajw0z60ggbyj8qvjzf8qah4mlss"; depends=[]; };
@@ -6059,58 +6324,65 @@ in with self; {
   ega = derive2 { name="ega"; version="2.0.0"; sha256="04kwh24aap22yclmcrix3vi553qb30hd43mgfzpdl0cw3ibrh7xg"; depends=[ggplot2 mgcv]; };
   egcm = derive2 { name="egcm"; version="1.0.12"; sha256="0nssf5six1j7z6fss7478zdbsfx60myzw833m7nsnaf1r8n4ixaf"; depends=[ggplot2 MASS pracma quantmod tseries urca xts zoo]; };
   egg = derive2 { name="egg"; version="0.4.0"; sha256="11zi42wvjd5x68xrxsqwzwdr9mb3iw9pm02mgy3z6m21mgyvgnmn"; depends=[ggplot2 gridExtra gtable]; };
-  eggCounts = derive2 { name="eggCounts"; version="2.0"; sha256="0qlx1wm50zh5mp3bn6lkkq43d19ji2fwa4x0z5f98qhmhxa74lck"; depends=[BH boot coda lattice numbers Rcpp RcppEigen rootSolve rstan StanHeaders testthat]; };
-  egoTERGM = derive2 { name="egoTERGM"; version="1.0.0"; sha256="10q52552srz2s9v3r3k4y8v8jfcb1arirw3mr1p9a5nbixdcnp8z"; depends=[boot btergm ergm GGally Matrix network sna speedglm statnet xergm_common]; };
+  eggCounts = derive2 { name="eggCounts"; version="2.1-1"; sha256="121hmqav8x0d6aqzbz96dv0rdc6mv070v5rvaz13rj17ix5y92yi"; depends=[BH boot coda lattice numbers Rcpp RcppEigen rootSolve rstan StanHeaders testthat]; };
+  egoTERGM = derive2 { name="egoTERGM"; version="2.0.1"; sha256="06yq951cgb1qkily13a3n3kjzpydcbzr8kdsg4mbp1z66nk40izd"; depends=[boot btergm ergm GGally Matrix network sna speedglm xergm_common]; };
   egonet = derive2 { name="egonet"; version="1.2"; sha256="1f0fbqyk2ilmhirxvf1iwgfappi5r7807ag77r89lbaf5jq8akl0"; depends=[sna]; };
-  egor = derive2 { name="egor"; version="0.18.06-02"; sha256="1q0kvgz04d80drvgli1pmra6dcn77swk8z19sj3lkqx3qmgjqn7m"; depends=[dplyr igraph network plyr purrr shiny survey tibble tidyr]; };
-  eha = derive2 { name="eha"; version="2.5.1"; sha256="0www19cc80xg2hi1ibajqnp931gda9pk95cnx976lq1kpxzb2pyl"; depends=[survival]; };
+  egor = derive2 { name="egor"; version="0.18.08-02"; sha256="14jhj1lj5bdsf64zq9gia63h0p3i9211dnla9g7r0dmlbbygwqgf"; depends=[dplyr igraph network plyr purrr shiny survey tibble tidyr]; };
+  eha = derive2 { name="eha"; version="2.6.0"; sha256="0nw72jcwcx2rzlzsrmdvg7pymyzf5icynidlr1m9b70v6rnqr84b"; depends=[survival]; };
   ei = derive2 { name="ei"; version="1.3-3"; sha256="0i8pvpal23zwsqldhmm3iis4vw9s08mlydpshaig2dsd9549gn11"; depends=[cubature eiPack ellipse foreach MASS mnormt msm mvtnorm plotrix sp tmvtnorm ucminf]; };
   eiCompare = derive2 { name="eiCompare"; version="2.1"; sha256="0kv4k1zk1gz3fapy2i2ydy0n38hy95i10r3hr3dx8mkkf3nsj46h"; depends=[cubature data_table ei eiPack ellipse foreach ggplot2 magrittr mnormt msm mvtnorm plotrix plyr R_utils stringr tidyr tmvtnorm ucminf]; };
   eiPack = derive2 { name="eiPack"; version="0.1-7"; sha256="1cxk31bj012ijm85sf6l4rjrwayw94j2d6aav8p9g1f0raha2s6y"; depends=[coda MASS msm]; };
   eigeninv = derive2 { name="eigeninv"; version="2011.8-1"; sha256="18dh29js824d7mrvmq3a33gl05fyldzvgi8mmmr477573iy9r30g"; depends=[]; };
   eigenmodel = derive2 { name="eigenmodel"; version="1.10"; sha256="1x613ipqpsq5yj4bb68g7yfwavd75n02xajr2cpbzsa2vyipvpsa"; depends=[]; };
   eigenprcomp = derive2 { name="eigenprcomp"; version="1.0"; sha256="156qyv7sl8nng55n3ay6dnpayyfrqv27ndz40xf4w92is9zmymy0"; depends=[]; };
+  eikosograms = derive2 { name="eikosograms"; version="0.1.1"; sha256="13s5wqcc8iwnhn3msrh9dfrvq9bwlby93p9v5wcnrm8m9iskax1s"; depends=[plyr]; };
   eive = derive2 { name="eive"; version="2.3"; sha256="073hwx944db7zxq6yib6yvciaic11k49zl1iqphippcd5ygkad80"; depends=[Rcpp]; };
+  eivtools = derive2 { name="eivtools"; version="0.1-8"; sha256="0ynmrql6dv10m7cwba5mzwlbvp6ab53nzqqvk3ihwyiqzmnnmpk4"; depends=[R2jags]; };
   eiwild = derive2 { name="eiwild"; version="0.6.7"; sha256="1fp4kvlmcjjnzn2a5cmlzaf6y5q6cdbbi2nmvjyqc4y1bmwh3srf"; depends=[coda gtools lattice]; };
-  eixport = derive2 { name="eixport"; version="0.3.0"; sha256="1ykv5jqri4zkshawck3lfl6jrzw24k27gwhi02rckzbrg2nb3909"; depends=[ncdf4 raster sf sp]; };
+  eixport = derive2 { name="eixport"; version="0.3.6"; sha256="0wzp7jxs80drp428m6kgx419vzrmiw6spgv9ldrakbfkjjnrzsa6"; depends=[cptcity ncdf4 raster sf sp]; };
   elasso = derive2 { name="elasso"; version="1.1"; sha256="0nz3vw803dvk4s45zc9swyrkjwna94z84dn4vfj3j17h74a0cij2"; depends=[glmnet SiZer]; };
   elastic = derive2 { name="elastic"; version="0.8.4"; sha256="0s0nz8j4f1qxjlgzllnfsirbpcggmb5f41zwdrb9xgwpnpn68jz9"; depends=[curl httr jsonlite]; };
   elasticIsing = derive2 { name="elasticIsing"; version="0.2"; sha256="1zjgvz7w5j06x2cd1fzjl85di95ah67m1lanw01kic2bvhfwfbn6"; depends=[cvTools glmnet magrittr qgraph reshape2]; };
-  elasticnet = derive2 { name="elasticnet"; version="1.1"; sha256="1x8rwqb275lz86vi044m1fy8xanmvs7f7irr1vczps1w45nsmqr2"; depends=[lars]; };
+  elasticnet = derive2 { name="elasticnet"; version="1.1.1"; sha256="0p9dplnsp28z4s2fl6afbwrgd0aj339fak8mmndicmrh7bb7rpmb"; depends=[lars]; };
   elasticsearchr = derive2 { name="elasticsearchr"; version="0.2.2"; sha256="0jawypqlk8374izh3gq9k6fwc2gwn74xa9lbmx4ww3rq2xp90xw6"; depends=[httr jsonlite]; };
   elec = derive2 { name="elec"; version="0.1.2"; sha256="0f7ahrjb52w8a8l5v00xla6z9afpz2zrckl9v04xalp34snhdwan"; depends=[]; };
   elec_strat = derive2 { name="elec.strat"; version="0.1.1"; sha256="09196k5c3jsikh98d33bn70izwcbx0wb5ki9fv1ij0dw9mnv4c3p"; depends=[elec]; };
   elect = derive2 { name="elect"; version="1.1.2"; sha256="1m79z697abzrddy849kshwqfygji3n56xz0flwa7xrqhx3nqrj3b"; depends=[msm nnet]; };
   elections = derive2 { name="elections"; version="1.0"; sha256="0ig3pd1dw978g2sg4ynzd3p15nk6hx17pxvbxfi5rm131mjdmjdm"; depends=[]; };
   electionsBR = derive2 { name="electionsBR"; version="0.3.0"; sha256="18aq1yz2l2g4cjbmk18n5vl8x8lkp90xwm82l0bg1z1smyv3agan"; depends=[data_table dplyr haven magrittr]; };
-  electoral = derive2 { name="electoral"; version="0.1.0"; sha256="0y4kkxm8vmj4gsan6qyhg28b0b6hgl4fghslk21d8w5w6syln4kh"; depends=[dplyr ineq tibble]; };
+  electoral = derive2 { name="electoral"; version="0.1.1"; sha256="0lmw9kwr189dzfxzlns9fmhrdy93ja8jl2s4jir07lichyiavs03"; depends=[dplyr ineq tibble]; };
   elementR = derive2 { name="elementR"; version="1.3.6"; sha256="12gg2x6xzms2ni80qdm04bfajg55ff6zkki0y2cz47kq70wzfkmg"; depends=[abind colourpicker devtools EnvStats gdata gnumeric httpuv lmtest outliers R6 reader readODS readxl shiny shinydashboard shinyjs stringr tcltk2 zoo]; };
   elevatr = derive2 { name="elevatr"; version="0.1.4"; sha256="0gxwlcfn271p8gf2iqwqbi61kcaahfdghsc0rwm3xxxysjb5a2b2"; depends=[httr jsonlite progress raster ratelimitr sp]; };
   elexr = derive2 { name="elexr"; version="1.0"; sha256="1xmrzlp55z6k3psdg4a3x3rsilvq3k37v9r7ydfn80ahvqjz0fqh"; depends=[]; };
   elhmc = derive2 { name="elhmc"; version="1.1.0"; sha256="0ngva7rnfj75fq93ycsv929m9ykijp48r7cvd6sfmi0sqsjinax5"; depends=[emplik MASS plyr]; };
   elliplot = derive2 { name="elliplot"; version="1.2.0"; sha256="186i4gr8k9bifzssblln8z6wxfmnplls3kc4m2liiz86mzsnim9r"; depends=[]; };
   ellipse = derive2 { name="ellipse"; version="0.4.1"; sha256="0g82vc51m3c1k0hnpp2zla6amxxgk2mmkl8ssnsc49jv3599r6hs"; depends=[]; };
-  elliptic = derive2 { name="elliptic"; version="1.3-7"; sha256="1bzd5x0yph76jh59ljl875grm52s8xpnmbgww1jjxx0hgkv7938g"; depends=[MASS]; };
-  elmNNRcpp = derive2 { name="elmNNRcpp"; version="1.0.0"; sha256="0jl5vr2zszsapdvwcwg1m2li20k377jzyzdrz4inirsqfy5zlymq"; depends=[KernelKnn Rcpp RcppArmadillo]; };
+  ellipsis = derive2 { name="ellipsis"; version="0.0.1"; sha256="02mv63ldvlqrcggxidxy5iiikpqia1z4ckjpnd7fjy91lvwy52ka"; depends=[]; };
+  elliptic = derive2 { name="elliptic"; version="1.3-9"; sha256="0gw1klhp9l7xjmwgh43wrvwnvvyz7mbnfjn49hxy3yqsi4fjgnw1"; depends=[MASS]; };
+  elmNNRcpp = derive2 { name="elmNNRcpp"; version="1.0.1"; sha256="1n71b5pqd1szhmp4q1h9aqgkx7s54f5i3xk5nljwzsn7cyih1kb3"; depends=[KernelKnn Rcpp RcppArmadillo]; };
   elo = derive2 { name="elo"; version="1.0.1"; sha256="0dhlac5l68a3jps2hx0bc7qjj8hsr1ha137hcwxnrfdwnki6chlp"; depends=[pROC Rcpp]; };
   emIRT = derive2 { name="emIRT"; version="0.0.8"; sha256="17igda5phgfapjzg7dkid5jj49gmwgpadjr27z7s21365i7md9mz"; depends=[pscl Rcpp RcppArmadillo]; };
-  embryogrowth = derive2 { name="embryogrowth"; version="7.4"; sha256="10h80jy391bm1avmh347ly3a1vhlhbpfbhrf39xl7x4nwcckd6bp"; depends=[deSolve HelpersMG numDeriv optimx]; };
+  embed = derive2 { name="embed"; version="0.0.1"; sha256="1xfk0zvs3bw10bipkqzjdgpz20kyrczk7lhsx6wyg6zrc7i3kk9f"; depends=[broom dplyr keras lme4 purrr recipes rlang rstanarm tensorflow tibble tidyr]; };
+  embryogrowth = derive2 { name="embryogrowth"; version="7.4.1"; sha256="1qha6l7q0565fn9yfvp04dmlpf21hr754gh6fpzhqnrh58h371v1"; depends=[deSolve HelpersMG numDeriv optimx]; };
   emdbook = derive2 { name="emdbook"; version="1.3.10"; sha256="0880cx6rqm9vgd2zxnd2k0igfl80gy7ak15w36clwlzavab59hmv"; depends=[bbmle coda lattice MASS plyr]; };
-  emdi = derive2 { name="emdi"; version="1.1.2"; sha256="135dnc7djxa7kyhaa0rd42m396ccic4mgd5pq4qj8zqgd2swj2aa"; depends=[boot ggplot2 gridExtra HLMdiag maptools MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 rgeos]; };
+  emdi = derive2 { name="emdi"; version="1.1.4"; sha256="0ghsxayv6d6bx9wfj6iafhaw5c6si2mqcpngj763pblnxjix8ag5"; depends=[boot ggplot2 gridExtra HLMdiag maptools MASS moments MuMIn nlme openxlsx parallelMap readODS reshape2 rgeos]; };
   emdist = derive2 { name="emdist"; version="0.3-1"; sha256="1z14pb9z9nkd0f2c8pln4hzkfqa9dk9n3vg8czc8jiv0ndnqi7rq"; depends=[]; };
   emg = derive2 { name="emg"; version="1.0.7"; sha256="1d4l9kcji6ba137f1qqjl763q2fd6bxryxsarc3iwi3mfi2b580m"; depends=[]; };
-  emil = derive2 { name="emil"; version="2.2.8"; sha256="02xjf8ipqr136y3pa375lwpg6h63yvbphhghs9jjxfl2r4fdkvcn"; depends=[data_table dplyr ggplot2 lazyeval magrittr Rcpp tidyr]; };
+  emhawkes = derive2 { name="emhawkes"; version="0.9.0"; sha256="1h6map6w66q91s6g1qr9wfk589cbvva1banqrxzzf29g7ihl15vh"; depends=[maxLik]; };
+  emil = derive2 { name="emil"; version="2.2.10"; sha256="05f0i33rd9pp7kkpry1v1ysgny3bwi712glxlcj6qm4fmi0ciik6"; depends=[data_table dplyr ggplot2 lazyeval magrittr Rcpp tidyr]; };
   emma = derive2 { name="emma"; version="0.1-0"; sha256="0psd8lrbcqla8mkhp0wlassaaimgwlmqy5yv2wwcq59mc5k1v27f"; depends=[clusterSim earth]; };
   emme2 = derive2 { name="emme2"; version="0.9"; sha256="035s4h95ychqb14wib0dqbg4sjy9q01fsryr0ri25g1hsi5f8lpm"; depends=[reshape]; };
-  emmeans = derive2 { name="emmeans"; version="1.2.2"; sha256="1ivrg1lp6cqffgg8hnfpw65zbkms6fbsgbw8nprbzfvfk7rrd8wd"; depends=[estimability mvtnorm plyr xtable]; };
+  emmeans = derive2 { name="emmeans"; version="1.3.0"; sha256="0kdyy4qp332c4yyvp1cnh48h6ks6ffir5rjcv0py0vm3m8c3hh61"; depends=[estimability mvtnorm plyr xtable]; };
   emoa = derive2 { name="emoa"; version="0.5-0"; sha256="1wcnsnkdmpcn21dyql5dmj728n794bmfr6g9hgh9apzbhn4cri8p"; depends=[]; };
   emojifont = derive2 { name="emojifont"; version="0.5.2"; sha256="0s1as6i5dz2rbd1aashn99fji2iksjzrkdkfi7wqnnxxpmkha3yx"; depends=[ggplot2 proto showtext sysfonts]; };
   emon = derive2 { name="emon"; version="1.3.2"; sha256="19khjjpyxvzhzihqq15w02l5v5ryyvxlklz1ch2gkmqcpnvyga32"; depends=[MASS mgcv]; };
   emov = derive2 { name="emov"; version="0.1.1"; sha256="04w0bjyxvfb4ky573byp7j9b7x4gqycr5pgpnsl6rzag00zsf45a"; depends=[]; };
+  empirical = derive2 { name="empirical"; version="0.1.0"; sha256="0flzb9nps0a5v5yc0jym2kyn20vpjm38a64vj7bda2bbxgdnqgbm"; depends=[]; };
   empiricalFDR_DESeq2 = derive2 { name="empiricalFDR.DESeq2"; version="1.0.3"; sha256="0h2mcdw4v3ac6dn0s4z37l4sdzbi12sxrnn0f0gc9z207dyyf6w3"; depends=[DESeq2 GenomicRanges]; };
-  emplik = derive2 { name="emplik"; version="1.0-3"; sha256="0b52383m2djdcg9b1a7r10k5pkzljz6dalvbg2gg962ckvpndb11"; depends=[quantreg]; };
-  emplik2 = derive2 { name="emplik2"; version="1.20"; sha256="0qdsfmnvds01qa4f112knv905k0fzccrqj9fwaqrqcy48cigm8pd"; depends=[]; };
-  emuR = derive2 { name="emuR"; version="1.0.0"; sha256="19740da4m22v9ys1z8q80khf71fjbaisn1f6whgal7p3cinvkcr3"; depends=[base64enc compare DBI dplyr httpuv jsonlite MASS purrr RCurl readr RSQLite shiny stringr tibble uuid wrassp]; };
+  emplik = derive2 { name="emplik"; version="1.0-4.3"; sha256="1g4hz85bvw29c77zs0ig487z92jjl682vv457x81l077h0psvk7c"; depends=[quantreg]; };
+  emplik2 = derive2 { name="emplik2"; version="1.21"; sha256="1980bwc4fc4rwzlwya030n5rv8rq0s82hnw955mvaxrbmicnqlla"; depends=[]; };
+  ems = derive2 { name="ems"; version="1.2.0"; sha256="1ni18bq26hilszv1caslms7z63p9mfph3497nvyshiqvfw17nas8"; depends=[]; };
+  emuR = derive2 { name="emuR"; version="1.1.0"; sha256="0677piygsyffrfba2cay74iymkhz3qvbin09v3pz3y0s0s3jxq1c"; depends=[base64enc compare DBI dplyr httpuv jsonlite MASS purrr RCurl readr rlang RSQLite shiny stringr tibble uuid wrassp]; };
   emulator = derive2 { name="emulator"; version="1.2-17"; sha256="150yg99qzankcqs74jvp35al9gla5vnfylwaswcw6yryi239mgi8"; depends=[mvtnorm]; };
   enaR = derive2 { name="enaR"; version="3.0.0"; sha256="0sy7k8l6b8p34bcf9bpjr1y6qkjkvn77y2w2ws7ivcr1fynrhm5p"; depends=[gdata limSolve MASS network sna stringr]; };
   enc = derive2 { name="enc"; version="0.2.0"; sha256="0n4s3abxmpndppm18dcibap2n22xpjzafn5xjskfdfrz3wjfy1kb"; depends=[]; };
@@ -6119,10 +6391,10 @@ in with self; {
   endogenous = derive2 { name="endogenous"; version="1.0"; sha256="079fmfxl9gf080zq5m1ixmgry9dawg2y6ixbfyc5da5jxf3zk9h8"; depends=[mvtnorm]; };
   endorse = derive2 { name="endorse"; version="1.6.0"; sha256="1j75sb2di2c092dilbjj5qsvb52h3zmm7wxflf9kg7xw227wq3zw"; depends=[coda]; };
   endtoend = derive2 { name="endtoend"; version="1.0"; sha256="0x8f6h0mznmncqdwvsp2f0x524g5clgvk64qflf373lyn6h1v0ap"; depends=[]; };
-  energy = derive2 { name="energy"; version="1.7-4"; sha256="12skvlridfq4jd5mh0yxl79ps0zi2xnlh4hsdgxad0gm7qky8awd"; depends=[boot Rcpp]; };
+  energy = derive2 { name="energy"; version="1.7-5"; sha256="15k9dg0a82cs9ypm0wpcsff3il1hzhnnv86dv5ngby1r144czhi4"; depends=[boot Rcpp]; };
   energyr = derive2 { name="energyr"; version="0.1.1"; sha256="1mid5f8l6v55pjzfx304a303mkn9b5r3jzmjl2fi2pz4v2jsdw04"; depends=[RgoogleMaps]; };
   enetLTS = derive2 { name="enetLTS"; version="0.1.0"; sha256="0lqnhrsg9fnkn8z5crdrajpgavk1knr9z4sbdffpa6q9n8s5pmhr"; depends=[cvTools ggplot2 glmnet reshape robustHD]; };
-  english = derive2 { name="english"; version="1.1-3"; sha256="032yc8ls3i6k5il40k3b0n55n2pj8zkm5kackrvsdsslywhainkw"; depends=[]; };
+  english = derive2 { name="english"; version="1.1-4"; sha256="0bl2aqirnfb18zd8xmxcil62q38j6xjxs18gzkvg6vdjdajd2y0k"; depends=[]; };
   engsoccerdata = derive2 { name="engsoccerdata"; version="0.1.5"; sha256="06fdgjgnk4lwshrkd0jad411x5nz9sxlri9fdhxrf2dr2hik4l8q"; depends=[dplyr magrittr tidyr]; };
   enpls = derive2 { name="enpls"; version="6.0"; sha256="07cwxxxsz2rj6d9dhmbfbv1vmk753ca7yy8ssq8lp4lxz3n4cp6p"; depends=[doParallel foreach ggplot2 plotly pls reshape2 spls]; };
   enrichR = derive2 { name="enrichR"; version="1.0"; sha256="0lfdr45sdyqhvgz8q4qdbk12mpv86d6id665kq6aaslgr8jggfmn"; depends=[httr rjson]; };
@@ -6138,35 +6410,41 @@ in with self; {
   entropy = derive2 { name="entropy"; version="1.2.1"; sha256="10vg4818q5g54pv2nn9x5i7pvky5nsv96syy47pz2mgqp1273cpd"; depends=[]; };
   envDocument = derive2 { name="envDocument"; version="2.4.0"; sha256="0r7h9p0b0gr2l18mv1ydlamsc0iq474dfhp450mdfnw2q289mhrn"; depends=[]; };
   envalysis = derive2 { name="envalysis"; version="0.3.3"; sha256="1ys93g5gxr9x1v4hg98dcpwa40n5xkh1j8drrmpnmxwq6gv01r6r"; depends=[drc ggplot2]; };
-  enveomics_R = derive2 { name="enveomics.R"; version="1.3"; sha256="1m97lmgf42ifzafz91g69nnf4q918464xir9cqjjn6ch5i7lvi65"; depends=[fitdistrplus investr modeest sn]; };
+  enveomics_R = derive2 { name="enveomics.R"; version="1.4.1"; sha256="1clq688whspmn4z1rdrhfnjc68p1yphw0myllps3gh148hqxh8mp"; depends=[fitdistrplus investr modeest sn]; };
   enviGCMS = derive2 { name="enviGCMS"; version="0.5.0"; sha256="0q7kyygfwphd553lgnv8pa0zghcjj4wvq2qyh8lx2plj9fp5am3n"; depends=[animation BiocParallel broom genefilter mixtools MSnbase rcdk RColorBrewer reshape2 rmarkdown shiny xcms]; };
   enviPat = derive2 { name="enviPat"; version="2.2"; sha256="1cf1h4v05riivjwil4167sncdxzgxf3r4snx1imjb6s4msx67ibi"; depends=[]; };
   enviPick = derive2 { name="enviPick"; version="1.5"; sha256="04q6zwqq2ip8b8h2n1jpgx1bzcvi7lazljs0806wiakbc79x232p"; depends=[readMzXmlData shiny]; };
   envirem = derive2 { name="envirem"; version="1.3"; sha256="1axgbjl4wh44vd5r9n9rbxxsi35k806r1kdvrcmmpkzwam6zd2lp"; depends=[raster RSAGA]; };
   envlpaster = derive2 { name="envlpaster"; version="0.1-2"; sha256="11a5n40k1ln5gxxvwq1vh4dhmhifhlm89hkhf36qnhj4bjh3v3y0"; depends=[aster aster2 caTools MASS]; };
+  envnames = derive2 { name="envnames"; version="0.3.0"; sha256="1gssjkpx7ngxpbn05c3c74myp4131wx032cf27gxvsvnqb6nn7j5"; depends=[]; };
   epade = derive2 { name="epade"; version="0.3.8"; sha256="1alvsifc6i71ilm1xxs1d7sqlapb48bqd6z2n4wi6pqcjvwp7bif"; depends=[plotrix]; };
   epandist = derive2 { name="epandist"; version="1.1.1"; sha256="0hxgbjns5bk82rgcmykxifnnxcnqdzmkimkkmpdif64zr5g3gjdg"; depends=[]; };
-  epanet2toolkit = derive2 { name="epanet2toolkit"; version="0.2.1"; sha256="18drz4pi2mqqwp2ji3a8k6mxh04n8yrwggf2p1k7bg3jchgh0kx3"; depends=[]; };
+  epanet2toolkit = derive2 { name="epanet2toolkit"; version="0.3.2"; sha256="0j64riiy7b2v1m8ki6d43jm61s7yjwlx4kxxdvlz3fx1xw7qf522"; depends=[]; };
   epanetReader = derive2 { name="epanetReader"; version="0.7.3"; sha256="05pwa6z03qsjwr9pxpbxycsd21p7mf5j5ajyg4yaas5g100s1k8c"; depends=[]; };
   epiDisplay = derive2 { name="epiDisplay"; version="3.5.0.1"; sha256="08ym6hcbmajzr4rasdb35fxk79vgpzfc16rmcm34f7f3zzz09dyl"; depends=[foreign MASS nnet survival]; };
-  epiR = derive2 { name="epiR"; version="0.9-96"; sha256="0gy2w49mbi9rpxw8bxb5d6i0zddl319ba1wcp24km165h9pvrs9d"; depends=[BiasedUrn survival]; };
+  epiR = derive2 { name="epiR"; version="0.9-97"; sha256="06x502f8pyyigafjb1cyc3d0qbvfk1qj5vy7n30lvz9hvp1rgph2"; depends=[BiasedUrn survival]; };
   epibasix = derive2 { name="epibasix"; version="1.3"; sha256="0d0087sa8lqw35pn7gdg2qqzw3dvz57sgavymwl1ybcj5d4lsbyk"; depends=[]; };
   epicontacts = derive2 { name="epicontacts"; version="1.1.0"; sha256="0f4a1y311z3fxw7ygj6fgsq6d2qn0ivxsjlh742pkmg3jb63s0f3"; depends=[colorspace dplyr igraph magrittr threejs visNetwork]; };
   epidata = derive2 { name="epidata"; version="0.2.0"; sha256="0n0100fy65kgw3c7gdmb5z5hmla5ch51b7872snf525a2r581i28"; depends=[dplyr httr jsonlite purrr readr rvest stringi tidyr xml2]; };
+  epiflows = derive2 { name="epiflows"; version="0.2.0"; sha256="09ri1p73ih0i08irc06ff169hi5vcl8bdi63b056kzxgmv17yqkp"; depends=[epicontacts geosphere ggmap ggplot2 htmltools htmlwidgets leaflet sp tibble visNetwork]; };
+  epimdr = derive2 { name="epimdr"; version="0.6-1"; sha256="1lcl9sk3c958dm225w33kaln76y4x9mkx5y2c9kh8wd0xz891p8v"; depends=[deSolve phaseR polspline shiny]; };
   epinet = derive2 { name="epinet"; version="2.1.8"; sha256="10bgq66n99kkz0nhmsz508aypxk57zk19p5l3xrb28n72k4rfgrf"; depends=[network]; };
   epiphy = derive2 { name="epiphy"; version="0.3.4"; sha256="04wsppjycnrzrml3zxrpr0xdxxas3hj8rskiivx5vfmfjpwipq4r"; depends=[ggplot2 msm pbapply Rcpp transport]; };
+  episcan = derive2 { name="episcan"; version="0.0.1"; sha256="02687f8gpc2czn19lapvazd6mnm8902ay0lhgi3wdrzfhir42m4r"; depends=[]; };
   episensr = derive2 { name="episensr"; version="0.9.2"; sha256="1w1228q8q2ysi3xi3m8a9z0c7japj97dssjkzpjcrng094cy82is"; depends=[actuar boot ggplot2 gridExtra llogistic logitnorm plyr reshape trapezoid triangle]; };
-  episheet = derive2 { name="episheet"; version="0.2.0"; sha256="15c4xbam9b60xkkgmbswj4raln49hk43pxp2l75a7j1wykgkif95"; depends=[dplyr ggplot2 magrittr tidyr]; };
+  episheet = derive2 { name="episheet"; version="0.3.0"; sha256="0lp0hd2xyiyrb9z46fjifcirv1wxfh3dkn5chlkhkzr2s5xvbl76"; depends=[assertthat dplyr ggplot2 magrittr rlang tidyr]; };
   episode = derive2 { name="episode"; version="1.0.0"; sha256="1djk36jkvr8xvhfddqg6xsmhxc3yrgivkm8g2hr4n1qixsk1ad8m"; depends=[glmnet Matrix nnls Rcpp RcppArmadillo]; };
   episplineDensity = derive2 { name="episplineDensity"; version="0.0-1"; sha256="0nmh97xajnnh54i04yq8fdici4n5xvcbpdbjdbz79483gnils4vn"; depends=[nloptr pracma]; };
   epistasis = derive2 { name="epistasis"; version="0.0.1-1"; sha256="0dfh26bs72i01hpxpgpgyiwpmg9mjpib8zynhc5ssxa0skm518wz"; depends=[glasso igraph Matrix tmvtnorm]; };
   epitab = derive2 { name="epitab"; version="0.2.2"; sha256="0yi65bblsikwsa9i7wys1mqf6pp6j01kyc8xkyrhs5n62y1k68nc"; depends=[kableExtra knitr MASS survival xml2]; };
   epitools = derive2 { name="epitools"; version="0.5-10"; sha256="1qqa2kam3j3mkbgk62g6lwygk2fkdlrpbi27wl37j4dkdkvx013m"; depends=[]; };
-  epitrix = derive2 { name="epitrix"; version="0.2.0"; sha256="1699v13478379waxkjsimxsq92ya2vd98kddvsv0dr7fldwl4png"; depends=[digest distcrete stringi]; };
+  epitrix = derive2 { name="epitrix"; version="0.2.1"; sha256="13nk31h4rdpla5m0fskv8s1fwx0r2qh4d0j4cf8vnlbl12rwyh57"; depends=[digest distcrete stringi]; };
+  eplusr = derive2 { name="eplusr"; version="0.9.3"; sha256="0rwshvgsrrcc21ladkmq2zj5vyzkijn5bcj9aiyqpzrwnpmz5iv4"; depends=[assertthat callr cli crayon data_table fasttime later lubridate processx progress R6 readr RSQLite stringr units uuid]; };
   eply = derive2 { name="eply"; version="0.1.2"; sha256="0al44pvqf6ls3dh129vlv3g56hk1nbql09rj0qsb04d9kaz9anrp"; depends=[magrittr]; };
   epoc = derive2 { name="epoc"; version="0.2.5-1"; sha256="1r19cvcqf39yf09n3znbdy3dsr7z96yx6zib6031mqqdsxaav5qd"; depends=[elasticnet graph irr lassoshooting Matrix Rgraphviz survival]; };
+  epos = derive2 { name="epos"; version="0.1.0"; sha256="0b9r552hbrs281z7pxxw1hxgv9d15qmyzvgk5xsrgh8wivkh4lwp"; depends=[dplyr ggplot2 gridExtra hashmap stringr testthat tidyr TopKLists xtable]; };
   epr = derive2 { name="epr"; version="3.0"; sha256="0czfz6qkcpa2qqs3pqii27hgpdvdzfrvxl0ip67v58hamq7kvjfv"; depends=[car lme4]; };
-  epubr = derive2 { name="epubr"; version="0.4.0"; sha256="0lh4fw16fb6qisygq8k7yf1cg6gm2yi8fqfsfwlaacb43d12bxzm"; depends=[dplyr magrittr purrr tidyr xml2 xslt]; };
+  epubr = derive2 { name="epubr"; version="0.5.0"; sha256="01ggkwv6l7j7zs70s53vjajfh9i0i7zvajmbqq1ij48b3mrc6y05"; depends=[dplyr magrittr purrr tidyr xml2 xslt]; };
   epxToR = derive2 { name="epxToR"; version="0.3-0"; sha256="0ckz7cvqsdilfkqap88brh4av9zv1fl3ijs4h4vlwwn7qvdcnhay"; depends=[httr XML]; };
   eqs2lavaan = derive2 { name="eqs2lavaan"; version="3.0"; sha256="1lj6jwkfd84h9ldb6l74lrx2pnsl1c0d7mnrcrjkska87djb2nzd"; depends=[lavaan stringr]; };
   eqtl = derive2 { name="eqtl"; version="1.1-7"; sha256="0xfr8344irhzyxs9flnqn4avk3iv1scqhzac5c2ppmzqhb398azr"; depends=[qtl]; };
@@ -6174,28 +6452,29 @@ in with self; {
   equalCovs = derive2 { name="equalCovs"; version="1.0"; sha256="18w7panyd6mhdr3x1iz9fkrw7min22rishs4xhkxgxs3nnyglkrn"; depends=[]; };
   equaltestMI = derive2 { name="equaltestMI"; version="0.1.0"; sha256="1zqhgx1x6lqjwqisl3ydb6yqp3jn6x7dgnc57r93v73sjx2j5aiz"; depends=[lavaan]; };
   equate = derive2 { name="equate"; version="2.0.7"; sha256="07cji0z139fk70d4wvrpk5m34fq1pfnqrsw336lgnp5a7zp3jz7n"; depends=[]; };
-  equateIRT = derive2 { name="equateIRT"; version="2.0-5"; sha256="0pkcg2331yaq05sn7164qvw3zqq5jxzh34k0c48zbam240ga94js"; depends=[mirt statmod]; };
+  equateIRT = derive2 { name="equateIRT"; version="2.1.0"; sha256="1g8gs00ralh5zw1fv3xd4c2xrb8gxgb7srcp0hgbpr0f7hw53fjm"; depends=[mirt statmod]; };
   equateMultiple = derive2 { name="equateMultiple"; version="0.0.0"; sha256="0q29bv8bb0c3sprhnkbbpn31phw37dwgk23v5ny4abzvlcgwncdb"; depends=[equateIRT numDeriv Rcpp RcppArmadillo statmod]; };
   equivalence = derive2 { name="equivalence"; version="0.7.2"; sha256="170l5gnk0dkjkfsx7qyrw56ircwsjzz9cvhakgyrqh7bj5734i79"; depends=[boot lattice PairedData]; };
-  erah = derive2 { name="erah"; version="1.0.5"; sha256="00vygdrngbp53wip2x6dni3ygwax309i9si3gyqkxxbbkpv24b7i"; depends=[caTools HiClimR igraph ncdf4 nnls osd quantreg Rcpp signal XML]; };
+  erah = derive2 { name="erah"; version="1.1.0"; sha256="1jp75z9y97v0dr656qqcf3npsijk91x5f2lyiwjy54yrzlf5bxp5"; depends=[igraph ncdf4 nnls quantreg Rcpp signal XML]; };
   erboost = derive2 { name="erboost"; version="1.3"; sha256="09hlpn6mqsmxfrrf7j3iy8ibb2lc4aw7rxy21g3pgqdmd9sbprim"; depends=[lattice]; };
   ercv = derive2 { name="ercv"; version="1.0.0"; sha256="1h0v0gscf1ks1shkdvkn1g8r8x5jsb66a4m7rnpdfwbp2ijh41gp"; depends=[]; };
   erer = derive2 { name="erer"; version="2.5"; sha256="0wgzd7r63d20vghmbilqn1p5033i5p31asya1gzwlipgyfxmqp0b"; depends=[lmtest systemfit tseries urca]; };
-  ergm = derive2 { name="ergm"; version="3.8.0"; sha256="1j4rqgxnwg4hcjg2knw3kvwad97035fxp9dqxx4pz6nlkmcib2js"; depends=[coda lpSolve MASS Matrix network robustbase statnet_common trust]; };
-  ergm_count = derive2 { name="ergm.count"; version="3.2.2"; sha256="1zg07vm5y6n6r687sbdy5hcinsircm4zzkx5w4849s9kwjlnpn0b"; depends=[ergm network statnet_common]; };
-  ergm_ego = derive2 { name="ergm.ego"; version="0.3.0"; sha256="1152g9zz2wach0hbj27knxficvhf062alqa0wpj6nyqj2vsgnchh"; depends=[coda ergm network RColorBrewer statnet_common]; };
-  ergm_graphlets = derive2 { name="ergm.graphlets"; version="1.0.3"; sha256="0xk45ialjckvjs96k19skk7imilcahgyzfwc74h6yand5q3mg6fz"; depends=[ergm network statnet_common]; };
-  ergm_rank = derive2 { name="ergm.rank"; version="1.0.1"; sha256="0k5ffqxn9fspbg82j2cmrcyav3nqjk7cnsq48xwy9i3z3vaq704k"; depends=[ergm network statnet_common]; };
-  ergm_userterms = derive2 { name="ergm.userterms"; version="3.1.1"; sha256="0pvklvyxi7sjc5041zl8vcisni0jz1283gyjw5mhas9bl47g1cwc"; depends=[ergm network statnet_common]; };
+  ergm = derive2 { name="ergm"; version="3.9.4"; sha256="0bmxha66p6i0sk9csav4wv9v7bz153c7zgwfdd1q8abmiwxpi3al"; depends=[coda dplyr lpSolve MASS Matrix network purrr rlang robustbase statnet_common tibble trust]; };
+  ergm_count = derive2 { name="ergm.count"; version="3.3.0"; sha256="184kxbabrdm8ywmr8pmz34wqyrv6712abggb2pf3mpiv7nblqjz1"; depends=[ergm network statnet_common]; };
+  ergm_ego = derive2 { name="ergm.ego"; version="0.4.0"; sha256="07r0wfx1414d54l5y43axkp1av9ig1bwyxs8011w2grkmxhawavj"; depends=[coda ergm network purrr RColorBrewer rlang statnet_common tibble]; };
+  ergm_rank = derive2 { name="ergm.rank"; version="1.1.0"; sha256="0mzwi5a3mf46nw8m1yychqnvysrps46dn8pp0xliyhcs4h0c3y0l"; depends=[ergm network statnet_common]; };
+  ergm_userterms = derive2 { name="ergm.userterms"; version="3.9.0"; sha256="0nccz7qwrn20xd78dlnq2dfb8167s9jglvk40wa0lmcjlz8x62n3"; depends=[ergm network statnet_common]; };
   ergmharris = derive2 { name="ergmharris"; version="1.0"; sha256="1bfijhsljlykb94wi25lbpv35zkmgqpmgzmxcq98gjvzbn5j9pdq"; depends=[]; };
-  erhcv = derive2 { name="erhcv"; version="0.1.2"; sha256="1rbgp5ba7drghfgcjfg546210m7pknfmgcbk4n68jpy39c267rvn"; depends=[igraph Rdpack stringi stringr]; };
+  erhcv = derive2 { name="erhcv"; version="0.1.3"; sha256="01wrjrcvpavw0yd4vhhyiyjda3m4mrh4dirh1a48bwy10nvfb4x0"; depends=[igraph Rdpack stringi stringr]; };
   erp_easy = derive2 { name="erp.easy"; version="1.1.0"; sha256="193n45w0rq3cy0nmxvv0h6s3yr8kfjlg90nd4dnqlsq85zlsizij"; depends=[gtools plyr signal]; };
   erpR = derive2 { name="erpR"; version="0.2.0"; sha256="1y6abc5fkcyyjh36maj1zbxppqzwd5wkvzvqahyvzsz5fqpjkcdx"; depends=[rpanel]; };
+  err = derive2 { name="err"; version="0.0.1"; sha256="0mkd5hr5pd7zqqbs205whcjm0gsg6sn5nd5abw7i46v0rq4xxvfp"; depends=[]; };
   errint = derive2 { name="errint"; version="1.0"; sha256="1ya7fsvwhmgxw87r32m4345n8pw2pbpv026xvml03s1kiam8qwbw"; depends=[rootSolve VGAM]; };
   errorist = derive2 { name="errorist"; version="0.0.1"; sha256="1569yvncc9rdzchs7cvx44dhy8xf10g2hwkiy3kp68h47qghxlbd"; depends=[searcher]; };
   errorizer = derive2 { name="errorizer"; version="0.2.1"; sha256="10p7ydm81x2gls0wn692llgj2rxhg4s96rv7gvihmgi5dflraypq"; depends=[]; };
   errorlocate = derive2 { name="errorlocate"; version="0.1.3"; sha256="0hfm0nad1bfh7a37zpn4aljrf69yc6dddz9iq46c1mzyrw116a9f"; depends=[lpSolveAPI validate]; };
-  errors = derive2 { name="errors"; version="0.2.1"; sha256="1hf7nqyhyv0n4qn5bzs1gb59fbn6vsiji0va8hpzzw3af0h3dqzy"; depends=[]; };
+  errors = derive2 { name="errors"; version="0.3.0"; sha256="1mdsqnsrrrx0fqpasllv05j2m1ykv6qj8il0647i9sxfqmsijjhk"; depends=[uuid]; };
+  esDesign = derive2 { name="esDesign"; version="1.0.0"; sha256="0d56zg9wvkds4jqrw3gdyz2hgyrhsghky3cbjfkgfba4lzing8zn"; depends=[]; };
   esaBcv = derive2 { name="esaBcv"; version="1.2.1"; sha256="0hgjcdbiy1a71vsb2vcyp0xmhy6wi4nlh1sqsfb2vxckc95i9i21"; depends=[corpcor svd]; };
   esaddle = derive2 { name="esaddle"; version="0.0.3"; sha256="04imppwls6a485kdfwykk4s0pyxas3i92ccghi780ys29y0nggmy"; depends=[doParallel mvnfast plyr Rcpp RcppArmadillo]; };
   esaps = derive2 { name="esaps"; version="0.1.0"; sha256="1rchs4i7n221gyhj9kbka4zmi2lf72q3ak2pdxkr7w6pcx6803yz"; depends=[plyr readODS readxl]; };
@@ -6204,22 +6483,22 @@ in with self; {
   eshrink = derive2 { name="eshrink"; version="0.1.0"; sha256="0s1jl652za7qwv70kmc1h3vbwlijl49527pwpm0z347lz2jdcigj"; depends=[glmnet MASS]; };
   esmisc = derive2 { name="esmisc"; version="0.0.3"; sha256="1d6xrdxwn85c8s60s7vzaymh7wa9f7fzd79hq5spzd12fr3zisvj"; depends=[ggplot2 raster readr]; };
   esmprep = derive2 { name="esmprep"; version="0.1.4"; sha256="1d1rr11fldxsamn19za03sdyvvybkh3bm5zvlrlkz022jj7pgxlr"; depends=[lubridate]; };
+  esquisse = derive2 { name="esquisse"; version="0.1.6"; sha256="0s9qp87n741wsg8sazpyzx4br7pd2p3wmipiig4bj71n7wy3wvwa"; depends=[ggplot2 ggthemes htmltools jsonlite miniUI RColorBrewer rstudioapi scales shiny shinyWidgets stringi]; };
   esreg = derive2 { name="esreg"; version="0.3.1"; sha256="19ikfy0g8yd224ah4gyq2k29lz3gagc6vrcv53awvdadqw0cpz8l"; depends=[quantreg Rcpp RcppArmadillo]; };
-  ess = derive2 { name="ess"; version="0.1.1"; sha256="1i94sfg8r9mnzcmyddq3zb56gwkgqdclyx90a5plpyy5insk13d7"; depends=[haven httr rvest stringr tibble xml2]; };
   essHist = derive2 { name="essHist"; version="1.1.1"; sha256="06wmvwjgbb1bfsjn4bv3p2m0i5nc6shn2p62kjp3iv6z42f5wndc"; depends=[Rcpp]; };
-  essurvey = derive2 { name="essurvey"; version="1.0.1"; sha256="0ks2qx6pzw5g1q6hzaymlcy6slkapw8iajn10gs7l1h5ybdf5w6l"; depends=[haven httr rvest stringr tibble xml2]; };
+  essurvey = derive2 { name="essurvey"; version="1.0.2"; sha256="0r1hkdksidx974pi08hg25qlzfxazqmzamwqg2njks2r9xk299p8"; depends=[haven httr rvest stringr xml2]; };
   estatapi = derive2 { name="estatapi"; version="0.3.0"; sha256="0gjc5x1b2l5qnwdg77nzy6d7bf9q93ll39sfy89izqm8wsydwwkp"; depends=[dplyr httr purrr readr]; };
   estimability = derive2 { name="estimability"; version="1.3"; sha256="0cifdaa71spkcxl4db4z884jrya865sg3dhcv4isd8fnzg2pjcd3"; depends=[]; };
-  estimatr = derive2 { name="estimatr"; version="0.8.0"; sha256="0xn1rk5z5n9llg9l55wab2lpcvx3azbrkjrfwi84mc3xk1m24y3p"; depends=[Formula Rcpp RcppEigen rlang]; };
+  estimatr = derive2 { name="estimatr"; version="0.12"; sha256="1xqhbr8dp86vli1da47whl130ljdn8l6h8j1lgsa12dfkz5amj6d"; depends=[Formula Rcpp RcppEigen rlang]; };
   estout = derive2 { name="estout"; version="1.2"; sha256="0whrwlh4kzyip45s4zifj64mgsbnrllpvphs6i5csb7hi3mdb3i5"; depends=[]; };
   estprod = derive2 { name="estprod"; version="1.1"; sha256="15grcpyhaazd1sl8544gx4zpjqi9p17d6siyb6a1ykzzyy1v1fln"; depends=[boot Formula gmm lazyeval minpack_lm]; };
   estudy2 = derive2 { name="estudy2"; version="0.8.5"; sha256="0aqvlgzp98965xmjmmg2dxj79bjcvgv0qa89h5l1lp0i0c23p908"; depends=[matrixStats quantmod Rcpp zoo]; };
   esvis = derive2 { name="esvis"; version="0.2.0"; sha256="0l4c87l9n94q14hwky7d7i4h9c5zh8r04zlcz9w4mx7ixfd34zir"; depends=[sfsmisc]; };
   etable = derive2 { name="etable"; version="1.2.0"; sha256="17xahaf2fz1qgqjaw8qbnss95il6g47m3w00yqc5nkvv37gs0q7c"; depends=[Hmisc xtable]; };
   etasFLP = derive2 { name="etasFLP"; version="1.4.0"; sha256="04d526yajakzivlcsz8631p0j482cbbgfpdmzkc9zr1m4495xxif"; depends=[fields mapdata maps rgl]; };
-  ether = derive2 { name="ether"; version="0.1.4"; sha256="1q6qxda5iw8zj7gy9h35apij5mbndd969ddip7zn5d720131kqra"; depends=[dplyr httr jsonlite Rmpfr]; };
+  ether = derive2 { name="ether"; version="0.1.5"; sha256="03skydbw4ch0lhhlm57qgg4q0vyd4rwzsq3v2w40jrczpxpdsn9q"; depends=[dplyr httr jsonlite Rmpfr]; };
   etl = derive2 { name="etl"; version="0.3.7"; sha256="045hkh95ki3s10l9mz4710ws2i9and4rqb0qk1c5sfslglc0riq5"; depends=[DBI downloader dplyr lubridate readr rlang rvest stringr tibble xml2]; };
-  etm = derive2 { name="etm"; version="1.0.3"; sha256="1srbllbmc2l1kcw2zi15sja8g3bkwz8bvy7k8al45dhyz8zdrxra"; depends=[data_table lattice Rcpp RcppArmadillo survival]; };
+  etm = derive2 { name="etm"; version="1.0.4"; sha256="0ws103b3pmli0z4xbyfxkly2wnnnxnnwc0r66qjjqjrlvm7pffl1"; depends=[data_table lattice Rcpp RcppArmadillo survival]; };
   etma = derive2 { name="etma"; version="1.1-1"; sha256="0g9244yx50y1gw0f37hskbcgyv4nldmzr86v3rmf3afabmjbyzjj"; depends=[]; };
   etrunct = derive2 { name="etrunct"; version="0.1"; sha256="0ayazgyqlc8jcqr03cwfmfhm4pck6xri1r6vkgqy4arqkrrnrcqr"; depends=[]; };
   etseed = derive2 { name="etseed"; version="0.1.0"; sha256="1kqbhvryqzmckk91ynn68yd7msqdsl6h818r164180f10flszr37"; depends=[httr jsonlite R6]; };
@@ -6227,10 +6506,10 @@ in with self; {
   eulerr = derive2 { name="eulerr"; version="4.1.0"; sha256="1y4s4g49sy7bkkbadj7a8la86h9yy9lzra5jawy2ig1aa3k81d98"; depends=[GenSA lattice polyclip Rcpp RcppArmadillo]; };
   europepmc = derive2 { name="europepmc"; version="0.3"; sha256="1ngqs1sqzkbwv98dd5z4cxj8bnz41wyd0g060a2vpqi3s99s4i2h"; depends=[dplyr httr jsonlite plyr progress purrr urltools xml2]; };
   europop = derive2 { name="europop"; version="0.3.1"; sha256="1ym257bxr4a0dmln1j8x3pf87wrryzgqyzhvk61whc6n2bj62x1s"; depends=[]; };
-  eurostat = derive2 { name="eurostat"; version="3.2.1"; sha256="1934lzxzs0l96c3bwwy5lpgm8kxrd55hdcmbn4prg2pzzj32wxfv"; depends=[broom classInt curl dplyr httr jsonlite RColorBrewer readr sf sp stringi stringr tibble tidyr]; };
-  eva = derive2 { name="eva"; version="0.2.4"; sha256="03jsiz6bkavwxpgllxaw8czahmm2rh5h8hhk5j7i9clcjx244vvj"; depends=[EnvStats Matrix]; };
-  evaluate = derive2 { name="evaluate"; version="0.10.1"; sha256="070vvmnbdlp7sz2zhza7fhd2a6mlwiln8fn4hyzhsiizbn4n79y9"; depends=[stringr]; };
-  evaluator = derive2 { name="evaluator"; version="0.3.0"; sha256="1dgihzai2p47zjfjb4wnl5rvwahfsxcaqaywdsf039p0g820nr8f"; depends=[dplyr extrafont furrr ggplot2 mc2d purrr readr readxl rlang scales stringi tibble tidyr viridis]; };
+  eurostat = derive2 { name="eurostat"; version="3.2.9"; sha256="0nwsjyhyflsq48kf8w6x3fv2qscqq0pz0dl93s221nbgd94qlyad"; depends=[broom classInt dplyr httr jsonlite RColorBrewer readr sf sp stringi stringr tibble tidyr]; };
+  eva = derive2 { name="eva"; version="0.2.5"; sha256="03hyzbqi2mgdrmzrjnwzvy0ndf7ha5959b63sgd1g0b998fibbmd"; depends=[EnvStats Matrix]; };
+  evaluate = derive2 { name="evaluate"; version="0.12"; sha256="11rpn40153kcvqqrfhg2ldqfs68frg6yzsl0k3rxnlnv4c0v008g"; depends=[]; };
+  evaluator = derive2 { name="evaluator"; version="0.3.1"; sha256="1xyj8nc74dg2si6j4j9d35wa0qsymskpkpfd89acl0dcs07sg62j"; depends=[dplyr extrafont furrr ggplot2 mc2d purrr readr readxl rlang scales stringi tibble tidyr viridis]; };
   evclass = derive2 { name="evclass"; version="1.1.1"; sha256="00lbhcgswpv0amz0mb93kx9p91sf0d7zvxfw9i8x1zpmpfd6nhcj"; depends=[FNN]; };
   evclust = derive2 { name="evclust"; version="1.0.3"; sha256="0cd0a8w0ixd9ilcqlxiaql4l2r49qrqnllb9qpg3xgnlxka3yb5m"; depends=[FNN limSolve Matrix R_utils]; };
   evd = derive2 { name="evd"; version="2.3-3"; sha256="1d2r8ppblxrq6s60pf0gv4rp8ja58j8lbpax8a996ais1hpfzi9g"; depends=[]; };
@@ -6239,6 +6518,7 @@ in with self; {
   eventInterval = derive2 { name="eventInterval"; version="1.3"; sha256="0nybzy2mpmazcvz06mkv7l9741mjm3i2q2sindq0777vb2k4504v"; depends=[MASS]; };
   eventdataR = derive2 { name="eventdataR"; version="0.2.0"; sha256="11apbbj68x1kxpwvihf4ng7wxy54jl1aw7r9hyq6gn7h8sk6lpjn"; depends=[]; };
   events = derive2 { name="events"; version="0.5"; sha256="1zka4ygymifs8snd7cabl11b5lg3f8g8370dkm9ybl40bn8vvqq2"; depends=[]; };
+  evian = derive2 { name="evian"; version="2.0.0"; sha256="18j8yl647xwr02mr0f8v9jwrqm0mr6s2jfhsanl4ggyq2v7nyw1d"; depends=[doParallel foreach ProfileLikelihood sandwich]; };
   evidence = derive2 { name="evidence"; version="0.8.10"; sha256="02kqk95kx4nv13fg6z55a5rv6sq6lv8azg0jjxbkg1j6hg15p7ai"; depends=[LaplacesDemon lattice LearnBayes loo rstan rstanarm]; };
   evidenceFactors = derive2 { name="evidenceFactors"; version="1.00"; sha256="12wndimbygn7h57f3q0xmxmvqrcdj98f0a58m22z2l0vmym53rhb"; depends=[sensitivitymv]; };
   evir = derive2 { name="evir"; version="1.7-4"; sha256="1h7a7z7v5k33y5hsdfczsri3vpbwspfgazhv4saknv2h11rgfpki"; depends=[]; };
@@ -6246,35 +6526,36 @@ in with self; {
   evobiR = derive2 { name="evobiR"; version="1.1"; sha256="0502xj1gv2g943vfqyllz4sr5z4mixf5vqlqi2v96mymnv9iwsr8"; depends=[ape geiger phytools seqinr shiny]; };
   evolqg = derive2 { name="evolqg"; version="0.2-5"; sha256="11n0gxkxhg1d2ziwbipqvyccgnsrzm3mk4xy2d7nxn662q1yl2ah"; depends=[ape coda expm ggplot2 igraph Matrix matrixcalc MCMCpack mvtnorm plyr Rcpp RcppArmadillo reshape2 vegan]; };
   evolvability = derive2 { name="evolvability"; version="1.1.0"; sha256="0lbyidb86yzvcfw86jfwnzbpijn64jr8fasycqq4h3r9c0x2by3j"; depends=[coda]; };
-  evoper = derive2 { name="evoper"; version="0.4.0"; sha256="11l55jj7f4ggwvimvl3d2sv2nyds29bl4dai6ycpgnff7wwdv43g"; depends=[boot deSolve futile_logger ggplot2 plot3D plyr reshape rrepast]; };
+  evoper = derive2 { name="evoper"; version="0.5.0"; sha256="064fcpd04ws8v6sl0bakiw34jmmfpg1w5pkq94y2gh1c576x4vwz"; depends=[boot data_table deSolve futile_logger ggplot2 plot3D plyr reshape RNetLogo rrepast]; };
   evt0 = derive2 { name="evt0"; version="1.1-3"; sha256="08sbyvx49kp3jsyki60gbbnci26d6yk0yj2zcl4bhfac8c3mm6ya"; depends=[evd]; };
   evtree = derive2 { name="evtree"; version="1.0-7"; sha256="1swq4cmx7hvsagn1nfavay5rg5r5axjxpcckvd3sy6lgvwvflcnq"; depends=[partykit]; };
   ewoc = derive2 { name="ewoc"; version="0.2.0"; sha256="0kanx14fhcbqz6gpyj7628vgy9fwz3ji5mkd4107b8pgpz2hkg00"; depends=[coda doParallel foreach Formula ggplot2 rjags]; };
   exCon = derive2 { name="exCon"; version="0.2.5"; sha256="0gqnv01dw4ncf3x3p74pc6f14a1ixq7icl2p18hsmvxdqqg7kgy7"; depends=[jsonlite]; };
-  exact2x2 = derive2 { name="exact2x2"; version="1.6.2"; sha256="172g6ahgd7j42bjidp6svjl70ws3bz58vb8vxgnalii6awcizkcm"; depends=[exactci ssanv]; };
+  exact2x2 = derive2 { name="exact2x2"; version="1.6.3"; sha256="11ayh6j6jj4p4bns3s2c2nmnigdzr6hpwjp4b2i7qw67kd321agn"; depends=[exactci ssanv]; };
   exactLoglinTest = derive2 { name="exactLoglinTest"; version="1.4.2"; sha256="0j146ih9szzks9r45vq1jf47hrwjq081q1nsja5h1gpllks8217h"; depends=[]; };
   exactRankTests = derive2 { name="exactRankTests"; version="0.8-29"; sha256="0sj4bf0sab2rsgh967i5jl7ml2l1niydqmyn7c6ybai1gavsdpi1"; depends=[]; };
   exactci = derive2 { name="exactci"; version="1.3-3"; sha256="03r35f6dyrck5pf43ypb1sjwfnvkhjkm1mbms3wh67ayfs2ypn0s"; depends=[ssanv]; };
   exactmeta = derive2 { name="exactmeta"; version="1.0-2"; sha256="1v807ns799qajffky4k18iah0s3qh2ava6sz5i85hwx9dhkz19h4"; depends=[]; };
-  exampletestr = derive2 { name="exampletestr"; version="1.3.0"; sha256="1z4lw115y5ijjb603rvy63a5gvhgymkq00ak0z6da2y5p6ym5rp3"; depends=[checkmate devtools filesstrings magrittr ore purrr readr roxygen2 rprojroot stringr styler]; };
+  exampletestr = derive2 { name="exampletestr"; version="1.4.0"; sha256="1k3qq0cqg1ksll3xa26cyr3yf1wcpl6sy013rs8lcid30cgn1pqp"; depends=[checkmate clisymbols crayon devtools filesstrings fs glue magrittr ore purrr readr rlang roxygen2 rprojroot stringr styler usethis]; };
   exams = derive2 { name="exams"; version="2.3-1"; sha256="0xg2rvfw61q5g9aj828219fqdnrwhy698xy7mkrcaly9mq95zs8b"; depends=[]; };
   excerptr = derive2 { name="excerptr"; version="1.4.1"; sha256="0z5gayf7kkhdg7ad2w4ycar5dd42jdjybrhzfmkqb3xr9pdrnijg"; depends=[git2r rprojroot rPython]; };
-  excursions = derive2 { name="excursions"; version="2.3.3"; sha256="16clwp76hq1q3m7ixjq1rv83vagxyj2fcs4jdsgvl9pzh5syzd3x"; depends=[Matrix sp]; };
+  excursions = derive2 { name="excursions"; version="2.4.4"; sha256="140p0vks40vsj1bi89rhdqih5jh7795pxzzqm9140vfiv8b0aya5"; depends=[Matrix sp]; };
   exif = derive2 { name="exif"; version="0.1.0"; sha256="12phqn5x1x0xs2xczl3064q983dalm261vqpyafhdcndm1y3gwbc"; depends=[Rcpp]; };
-  exifr = derive2 { name="exifr"; version="0.2.1"; sha256="0969ip7vwhs3r9zwy5l1gqg886yl4gfw8ss2frnq9nmqpn1ib1v2"; depends=[curl dplyr jsonlite purrr tibble]; };
+  exifr = derive2 { name="exifr"; version="0.2.2"; sha256="1na5d28x2s6lgwydfnhjvkya8kwsf4nh894f1inhzchk7g5cj475"; depends=[curl dplyr jsonlite purrr tibble]; };
+  exiftoolr = derive2 { name="exiftoolr"; version="0.1.1"; sha256="0qip3r2vvxj0ax2pf150hmka70yiv9k2vlfj5pxyminri7scvf39"; depends=[curl jsonlite]; };
   exp2flux = derive2 { name="exp2flux"; version="0.1"; sha256="1b3ychb4wcf6dbccx2ddms5xygdgc296cnw4474fm81yrfjznplv"; depends=[gage igraph sybil]; };
   expandFunctions = derive2 { name="expandFunctions"; version="0.1.0"; sha256="0661l4ab0xhjidmh8ycvymhp3wgxafm7nd1c59bfpxhyhz76n1p4"; depends=[glmnet orthopolynom plyr polynom]; };
   expands = derive2 { name="expands"; version="2.1.2"; sha256="15r5wld63kwk3kcl5x09dj0n1mgcl076lcjsmf0vbh10x4n0avrk"; depends=[ape commonsMath flexclust flexmix gplots matlab moments NbClust plyr RColorBrewer rJava]; };
   experiment = derive2 { name="experiment"; version="1.1-4"; sha256="08d9m72l6n2ygy5x8aakzv3n71ybqy1i8yzv55f7r4w1kk4pbk5i"; depends=[boot MASS]; };
   expert = derive2 { name="expert"; version="1.0-0"; sha256="0y9vcigvzhymalpv31b9nvmr86z1dz7x29yj838vks0dsv23rgrf"; depends=[]; };
   expint = derive2 { name="expint"; version="0.1-5"; sha256="12ki8j17p070kq2mdzzai755wy1n6kvinax0ldd63kynij9n0gdh"; depends=[]; };
-  explor = derive2 { name="explor"; version="0.3.3"; sha256="1b3swb7ikp2ik3300ljg2rll5gka4l4lfg95bqbgap3ph4dclv7y"; depends=[dplyr DT ggplot2 highr scatterD3 shiny tidyr]; };
+  explor = derive2 { name="explor"; version="0.3.4"; sha256="1gdahxglpk7wyf89ixqaqw95rzac4kii2qyxkk3b26hg5chfnd7k"; depends=[dplyr DT ggplot2 highr scatterD3 shiny tidyr]; };
   exploreR = derive2 { name="exploreR"; version="0.1"; sha256="154j5wiiy9vqdvh1qvdkz2fdp2phcygbbjl7nj5nkn07xwxbsc77"; depends=[ggplot2]; };
-  expm = derive2 { name="expm"; version="0.999-2"; sha256="1mihl67kvv1xv0figp25jkmwfn4iwkcx15cng2348y8gm6zybw9q"; depends=[Matrix]; };
+  expm = derive2 { name="expm"; version="0.999-3"; sha256="04k4a6g071jkjc0d30ncmf713dj16brcs9m6pj43hnycc1caq6si"; depends=[Matrix]; };
   expoRkit = derive2 { name="expoRkit"; version="0.9.2"; sha256="0qlzz86cyfz2yyynz8bj28086d1pc93gvjy1idip80m7z6vsrsxq"; depends=[Matrix SparseM]; };
   expoTree = derive2 { name="expoTree"; version="1.0.1"; sha256="0hj1x4niqp0ghqik3mz733nc3zpnhyknrdpzpj6y2rfia2ysdiz8"; depends=[ape deSolve]; };
   expp = derive2 { name="expp"; version="1.2.2"; sha256="0xr24xzplgamj8dkjk9n9jmrbyw056z57hkm9h4j43g63vxrinlj"; depends=[deldir rgeos sp spatstat spdep]; };
-  exprso = derive2 { name="exprso"; version="0.3.6"; sha256="0df3c79iscgrdj14d82vibsxz85zb99j55b3r6jw0zqs5czd8rhd"; depends=[cluster e1071 frbs gtools kernlab lattice MASS nnet plyr randomForest ROCR rpart sampling]; };
+  exprso = derive2 { name="exprso"; version="0.4.0"; sha256="122bh96hhn2wbwjlrnrb9s9bkfd2wp43vsyr8glxrd47mdvm2i9v"; depends=[cluster e1071 frbs kernlab lattice MASS nnet plyr randomForest ROCR rpart sampling]; };
   expsmooth = derive2 { name="expsmooth"; version="2.3"; sha256="0alqg777g7zzbjbg86f00p2jzzlp4zyswpbif7ndd0zr8xis6zdc"; depends=[forecast]; };
   expss = derive2 { name="expss"; version="0.8.7"; sha256="1p0jzqbjagx00qwjhsjyvmqijlp33qjhj7k9b8rddibvg9ysmcji"; depends=[data_table foreign htmlTable magrittr matrixStats]; };
   exptest = derive2 { name="exptest"; version="1.2"; sha256="0wgjg62rjhnr206hkg5h2923q8dq151wyv54pi369hzy3lp8qrvq"; depends=[]; };
@@ -6287,14 +6568,15 @@ in with self; {
   extfunnel = derive2 { name="extfunnel"; version="1.3"; sha256="162w5b2wjs3yqy8jisamsapav6swa8sskf1b6x5hglnrv3i4qyyy"; depends=[rmeta]; };
   extlasso = derive2 { name="extlasso"; version="0.2"; sha256="05774y0i01lrbyws6zx5ymhcglllv1wc7gzrnyx8i5d1lxdinsyd"; depends=[]; };
   extraBinomial = derive2 { name="extraBinomial"; version="2.1"; sha256="0qmvl35f7n78kghszwyaz4wzbswqy4p98c3b6alzrc2ldsq6pq5z"; depends=[]; };
-  extraDistr = derive2 { name="extraDistr"; version="1.8.9"; sha256="1fg8vjpal33y51iqzglk1yvy46d7js0l0wfbdy698lq8a06hq19p"; depends=[Rcpp]; };
+  extraDistr = derive2 { name="extraDistr"; version="1.8.10"; sha256="00lvqp5bb3iak5myiz4rqm887bkq9sdh7aybmz84mmfni6q01m28"; depends=[Rcpp]; };
   extraTrees = derive2 { name="extraTrees"; version="1.0.5"; sha256="1rvvp2p9j8ih8fid1n17606pa23bjg3i2659w1l6w0jkb1p23zcx"; depends=[rJava]; };
-  extracat = derive2 { name="extracat"; version="1.7-5"; sha256="1jj3mkn7s0m4dhnbrqhhxx6k2macmjjrmd7v7rqb5wivj5g7b89v"; depends=[colorspace data_table ggplot2 hexbin plyr reshape2 scales TSP]; };
+  extracat = derive2 { name="extracat"; version="1.7-6"; sha256="1a4ppfr9lsr1hlbf6m47sm8kflq8rp2khp1vc9xmnr9jxlwz3l2d"; depends=[colorspace data_table ggplot2 hexbin plyr reshape2 scales TSP]; };
   extrafont = derive2 { name="extrafont"; version="0.17"; sha256="0b9k2n9sk23bh45hjgnkxpjyvpdrz1hx7kmxvmb4nhlhm1wpsv9g"; depends=[extrafontdb Rttf2pt1]; };
   extrafontdb = derive2 { name="extrafontdb"; version="1.0"; sha256="115n42hfvv5h4nn4cfkfmkmn968py4lpy8zd0d6w5yylwpzbm8gs"; depends=[]; };
   extremeStat = derive2 { name="extremeStat"; version="1.4.0"; sha256="0fvkvlm47ri05w9h5qa937ijsc5lg51jc825wq9pmn7aiv58yxzm"; depends=[berryFunctions evd evir extRemes fExtremes ismev lmomco pbapply RColorBrewer Renext]; };
   extremefit = derive2 { name="extremefit"; version="0.2.3"; sha256="1m2960qbs2qha4975sq5awsvlk10s1mgb3cm91fyrm6lh50plv5m"; depends=[]; };
   extremevalues = derive2 { name="extremevalues"; version="2.3.2"; sha256="0pyngxljdnjwnbwcb0gmxcirv70r1s1wyq4m1wm5rprpdj8v9xil"; depends=[gWidgets gWidgetstcltk]; };
+  extremis = derive2 { name="extremis"; version="0.90"; sha256="1cnwn70d9swks5b2y915l18gky9v23vaqlaaggshi0ghn3snb4sm"; depends=[emplik]; };
   extremogram = derive2 { name="extremogram"; version="1.0.2"; sha256="13k869v6j4ik9p8w0gf1absvb45xbd3nnwghsz0ix7y0vyvry358"; depends=[boot MASS]; };
   exuber = derive2 { name="exuber"; version="0.1.0"; sha256="0jm0kxw7f4pzy162alp0q9kxgyrg2qllhxl7ijaq5qx4wnyhab3m"; depends=[doParallel dplyr foreach ggplot2 purrr Rcpp rlang]; };
   eyelinker = derive2 { name="eyelinker"; version="0.1"; sha256="1lwpm247czqm26zvv5c6lkhdxpp4svszfw74g9ys9vwvwhry9c15"; depends=[intervals magrittr plyr readr stringi stringr]; };
@@ -6314,7 +6596,7 @@ in with self; {
   fCertificates = derive2 { name="fCertificates"; version="0.5-4"; sha256="1a49gkzvb83lqqw65lxlaszpicn663hwi9wrbsb3f6z7znylkzaf"; depends=[fBasics fExoticOptions fOptions]; };
   fChange = derive2 { name="fChange"; version="0.1.0"; sha256="1pj4q9dsqqgv198kfv410qkpgynhd580bcsigmak598m5jx3rf7l"; depends=[fda lattice reshape2 sandwich sde]; };
   fCopulae = derive2 { name="fCopulae"; version="3042.82"; sha256="10wknqrrs5j63v7qnp5qmk85688r36vli4r99i49y2i2nv10yp5r"; depends=[fBasics fMultivar timeDate timeSeries]; };
-  fDMA = derive2 { name="fDMA"; version="2.2.3.1"; sha256="0lkidcc9r3psngdn60wk5zk6k32qxgklcrk23jhf88qnrfqbasw4"; depends=[doParallel foreach forecast gplots iterators MSwM png psych Rcpp RcppArmadillo tseries xts zoo]; };
+  fDMA = derive2 { name="fDMA"; version="2.2.4"; sha256="0lpp6gyynfziyn5ar3wlq628b5lvw5dhxzw6wr5xwwfaarqf7qfx"; depends=[doParallel foreach forecast gplots iterators itertools MSwM png psych Rcpp RcppArmadillo tseries xts zoo]; };
   fExoticOptions = derive2 { name="fExoticOptions"; version="3042.80"; sha256="1b3y7j5ywic6xhsj2afq6y5f5l0npgav854rb87938rjckz95d4h"; depends=[fBasics fOptions timeDate timeSeries]; };
   fExpressCertificates = derive2 { name="fExpressCertificates"; version="1.2"; sha256="1r4qkhf7alasbwjz910b0x4dlzm72af06kv7v2vwyzvf3byn21c5"; depends=[fCertificates Matrix mvtnorm tmvtnorm]; };
   fExtremes = derive2 { name="fExtremes"; version="3042.82"; sha256="1n0afql4csgsqf7j9x2v8yxncvpknms643l9knm0fqb4pdbaw58c"; depends=[fBasics fGarch timeDate timeSeries]; };
@@ -6330,7 +6612,7 @@ in with self; {
   fTrading = derive2 { name="fTrading"; version="3042.79"; sha256="0xnfg4npfdrvmp1n6vbsm7if16n5j83b7y1i2m5b34cqnlz9d69y"; depends=[fBasics timeDate timeSeries]; };
   fUnitRoots = derive2 { name="fUnitRoots"; version="3042.79"; sha256="1hsv47dm0hx3s04g9h0bjdgi79zbfihnfxxdc2jskqp94yl7azsy"; depends=[fBasics timeDate timeSeries urca]; };
   fabCI = derive2 { name="fabCI"; version="0.1"; sha256="123bc56nnx6hcj257imsd8sc6d0pggw08lf4m0lr90631gcm1mkn"; depends=[]; };
-  fabricatr = derive2 { name="fabricatr"; version="0.4.0"; sha256="0z04n2n44anpci8m4m5hs83nwhiczil7lkg8glcgngrdh994k8hc"; depends=[rlang]; };
+  fabricatr = derive2 { name="fabricatr"; version="0.6.0"; sha256="11vl2gabri7pb2ka7aqq3w7rxsi26qcdyqdhca9jpxm2m0swm2ms"; depends=[rlang]; };
   face = derive2 { name="face"; version="0.1-4"; sha256="0kkgblxzhjzifxnym6g5psiwvfgydk1scqbxraldklm8c4a12zc3"; depends=[Matrix matrixcalc mgcv refund]; };
   facebook_S4 = derive2 { name="facebook.S4"; version="1.1.0"; sha256="1if3fgyvj6pbf48yjwa5fkn3s4rl6kj9s1nk6dwphykhx72ghzrj"; depends=[httr magrittr plyr rjson]; };
   facerec = derive2 { name="facerec"; version="0.1.0"; sha256="1dipcnxjz6yd34w0jrrvj5p0pwdgz1l5m9zvri7mflnz7g34gmaj"; depends=[dplyr httr jsonlite knitr magrittr rlang snakecase stringr]; };
@@ -6346,7 +6628,7 @@ in with self; {
   fail = derive2 { name="fail"; version="1.3"; sha256="0vfm6kmpmgsamda5p0sl771kbnsscan31l2chzssyw93kwmams7d"; depends=[BBmisc checkmate]; };
   faisalconjoint = derive2 { name="faisalconjoint"; version="1.15"; sha256="08sb4za8qyadvigq2z7b0r44qk2lpahpnz9nv16xfjb1zhdkz5w3"; depends=[]; };
   fakeR = derive2 { name="fakeR"; version="1.0"; sha256="0f4ngnd8s34j1327zp3aqnsiw0gfxkp1i24ng20hrmfl13s1qmxp"; depends=[mvtnorm polycor pscl VGAM]; };
-  fakemake = derive2 { name="fakemake"; version="1.2.0"; sha256="1acd404fl0bc6xsal39vgx4j5jdqa24csn15cmw26yach7dxrm87"; depends=[callr igraph MakefileR withr]; };
+  fakemake = derive2 { name="fakemake"; version="1.3.0"; sha256="1w2zrx5imkmcd9aikis2r54k2g9g6l0q7n3d18vjbk02js3f4jv4"; depends=[callr igraph MakefileR withr]; };
   falcon = derive2 { name="falcon"; version="0.2"; sha256="09hlvwwj3k3nhcsxijjvv8x74a9m200ayjjplrp4baxvczwyq341"; depends=[]; };
   falconx = derive2 { name="falconx"; version="0.2"; sha256="0648mvbc7ga7vr2xqzyln3dgd11h5s4bqhv3p55mj7smr4qv7hv9"; depends=[]; };
   fam2r = derive2 { name="fam2r"; version="1.2"; sha256="0pq5cmzwk3s8cz5x8dsfb2d6qfpapkrwbzvkqmqkhcwhwryy40mm"; depends=[Familias paramlink]; };
@@ -6356,16 +6638,17 @@ in with self; {
   fancycut = derive2 { name="fancycut"; version="0.1.2"; sha256="1xg5qjxf77g10h07x6rvb8c3klc9gbr77bkw352qpas268pkswl2"; depends=[]; };
   fanovaGraph = derive2 { name="fanovaGraph"; version="1.4.8"; sha256="1da7yskh2gn4arrrnalkl3izqyyrm0yf0il4v2izs7di7qlw3m6v"; depends=[DiceKriging igraph sensitivity]; };
   fanplot = derive2 { name="fanplot"; version="3.4.1"; sha256="1xj1hdz3i9c9wdx7ryiqag69khh3544v4474ilxxiyahxg2r6m45"; depends=[]; };
-  fansi = derive2 { name="fansi"; version="0.2.3"; sha256="1jcnzl8qdav5niv52xa1r8jp5c4wsnhsddjlnrc2ss76pzwgwvfv"; depends=[]; };
+  fansi = derive2 { name="fansi"; version="0.4.0"; sha256="02f2rx7v7wz6w97m2slwky2i5y8f9iafycmkyr3siy3z3k8fj171"; depends=[]; };
   faoutlier = derive2 { name="faoutlier"; version="0.7.2"; sha256="0h2azbkxpz03qjmq558mh7dkpv87vbvminvg69wqsx21m6hdl5r3"; depends=[lattice lavaan MASS mirt mvtnorm pbapply sem]; };
   far = derive2 { name="far"; version="0.6-5"; sha256="18lj2mgnn9s59ypkr19zzv0sffwpx9mgk975xmpvw4kkl84dykis"; depends=[nlme]; };
   faraway = derive2 { name="faraway"; version="1.0.7"; sha256="0lalf52y9rb4zdb4kpscwddb4zy0af7r5sm7lx8s9jaqykrwrfq6"; depends=[lme4 nlme]; };
   farff = derive2 { name="farff"; version="1.0"; sha256="1w3mi0vsw7mpqznaf3rnzf7va7ax07n5rrpm2hnjh0q25lsv55hk"; depends=[BBmisc checkmate readr stringi]; };
+  farver = derive2 { name="farver"; version="1.0"; sha256="18r98j9n2l6zjjx6gqvrjj6j19r52k0mrn72p4vyy97ag8fs8hb1"; depends=[Rcpp]; };
   fasjem = derive2 { name="fasjem"; version="1.1.2"; sha256="1bbrcyyg96hakgla3604byrkn9034197vy2is048kdq20yr2y11n"; depends=[igraph]; };
   fast = derive2 { name="fast"; version="0.64"; sha256="098rk6kszdx3szcwvwzcv7zlcd6qvqvbqch7q8ilas6vbki81ba4"; depends=[zoo]; };
   fastAdaboost = derive2 { name="fastAdaboost"; version="1.0.0"; sha256="1pv1y6znvc37pgwk99v4r0hljhipq8v6r3r5cb5vhgyl0bfi8g38"; depends=[Rcpp rpart]; };
   fastDummies = derive2 { name="fastDummies"; version="1.2.0"; sha256="0w7764b64isvlimly06i46hk1rspd3bjrqi2f2gafcwz5lk2jc3s"; depends=[data_table tibble]; };
-  fastGHQuad = derive2 { name="fastGHQuad"; version="0.2"; sha256="0yv3wdyj7hs1gr3rq08k520v0ldmv5zzng709xjx2kchhwhmy8ah"; depends=[Rcpp]; };
+  fastGHQuad = derive2 { name="fastGHQuad"; version="1.0"; sha256="1rjia8wggadr9xwxcmzmal0rc4g6pa3dr5888fbbnb6abl8b2lrj"; depends=[Rcpp]; };
   fastGraph = derive2 { name="fastGraph"; version="1.1"; sha256="1vbi5yssnh8hcbmrq1r437vpvj8hqd3vc8wmcy0nbyvnmyjaxkvb"; depends=[]; };
   fastHICA = derive2 { name="fastHICA"; version="1.0.2"; sha256="1h794ybbii0k7v3x0r1499zxdqa1i1dpi3i7idzqdrffnb5kmwlv"; depends=[energy fastICA]; };
   fastICA = derive2 { name="fastICA"; version="1.2-1"; sha256="108z2ymby5y4h8l4l2krqwm28rya93gq09yylgilnm3afvfrfabg"; depends=[]; };
@@ -6373,7 +6656,7 @@ in with self; {
   fastLink = derive2 { name="fastLink"; version="0.4.0"; sha256="0cqrg6fj7ylxf5brwmdsv7wrak8b395yszdy1cz3q87r3ayi02cq"; depends=[adagio data_table doParallel dplyr FactoClass foreach gtools Matrix plotrix Rcpp RcppArmadillo RcppEigen stringdist stringi stringr]; };
   fastM = derive2 { name="fastM"; version="0.0-4"; sha256="1n9a431w0hl4kr3pa32kcyd1d73acz4vb9vhfkckk3099mg46d9m"; depends=[Rcpp RcppArmadillo]; };
   fastR = derive2 { name="fastR"; version="0.10.3"; sha256="1sz6krxiamq3rp4h9ah2b1zvyyrlvsn7lpvrjv1xda2c1kqqkvmk"; depends=[lattice mosaic mosaicCalc mosaicData]; };
-  fastR2 = derive2 { name="fastR2"; version="1.1.0"; sha256="145gkz777zx80bxx1zwwj4diswl6yf2v02wgfpy3rvk2q225f1id"; depends=[dplyr ggplot2 lattice maxLik miscTools mosaic numDeriv]; };
+  fastR2 = derive2 { name="fastR2"; version="1.2.1"; sha256="15mqsdy79zvd4srrszdjp0kh9lfcq3yxp7j5d4xcqbjbwsgy68il"; depends=[dplyr ggplot2 lattice maxLik miscTools mosaic numDeriv]; };
   fastSOM = derive2 { name="fastSOM"; version="1.0.0"; sha256="1x4kxys7mxlxz7cfbjig44za8m8p19xgzcs5y2wn9320sx8b0wc0"; depends=[]; };
   fastTextR = derive2 { name="fastTextR"; version="1.0"; sha256="0l0f9jvsa68a3vd6mwbhsqd12729nd6nwsnlzrhsg9wj9rx8kpmi"; depends=[Rcpp]; };
   fasta = derive2 { name="fasta"; version="0.1.0"; sha256="0wnppxn3039dj58xm0b66fsyq537bk8k8m56im11xj1iwc3zc6vw"; depends=[]; };
@@ -6382,11 +6665,12 @@ in with self; {
   fastcmh = derive2 { name="fastcmh"; version="0.2.7"; sha256="0hib3r3pkfdi67bdy4pf1pw6869vq4b3pg1pq1zwpyy76nbnq9vl"; depends=[bindata Rcpp]; };
   fastcox = derive2 { name="fastcox"; version="1.1.3"; sha256="0jn19v6mkwgyz8x63xrfgkgnf0f2rq338r5qkhz690mdzr4c47a3"; depends=[Matrix]; };
   fastdigest = derive2 { name="fastdigest"; version="0.6-3"; sha256="02csl261v7nassi5119ygw6jglm8q6rssg7lgyxzj73mkyilm832"; depends=[]; };
+  fasterElasticNet = derive2 { name="fasterElasticNet"; version="1.1.2"; sha256="1hr0wc6s6zpq1hkfgshf0dqjxb7s2849bb8lb04nmi6p42r3628g"; depends=[Rcpp RcppArmadillo]; };
   fasteraster = derive2 { name="fasteraster"; version="1.1.1"; sha256="1ycr2h046jds2758xvxn00rhglx3zarbzn3r38j66j5pnz2iiq4f"; depends=[Rcpp]; };
   fasterize = derive2 { name="fasterize"; version="1.0.0"; sha256="0q8n1r5n06yr6vmnwrdajx8923646bzm7ywgn2f0zxl214plf56s"; depends=[raster Rcpp RcppArmadillo sp]; };
   fastmaRching = derive2 { name="fastmaRching"; version="1.1.0"; sha256="085xr5i6h6vwl1flzbkwqsm8d815s0p02p0mir60jqjvy0s7haip"; depends=[raster rgdal sp]; };
   fastmatch = derive2 { name="fastmatch"; version="1.1-0"; sha256="0z80jxkygmzn11sq0c2iz357s9bpki548lg926g85gldhfj1md90"; depends=[]; };
-  fastnet = derive2 { name="fastnet"; version="0.1.5"; sha256="0l14ahrk4p5ils5rqwkj25f7xxhjqxpibgcy942c6pyc33rbsbcl"; depends=[doParallel foreach igraph tidygraph]; };
+  fastnet = derive2 { name="fastnet"; version="0.1.6"; sha256="16jdwvk1xhl6bn9fx5s8pzvbizx6c0jmg6arqf201a7ghw2wi4xh"; depends=[doParallel foreach igraph tidygraph]; };
   fastpseudo = derive2 { name="fastpseudo"; version="0.1"; sha256="0paag4pjh3gs270j663bsl65sfrq43gk2zzqmalr03fmcckp6aaj"; depends=[]; };
   fastqcr = derive2 { name="fastqcr"; version="0.1.0"; sha256="0hzlp66as7k0bh3biqkngacpkq1hi3y3gp6wg4c5476ywzm83gra"; depends=[dplyr ggplot2 gridExtra magrittr readr rmarkdown rvest scales tibble tidyr xml2]; };
   fastrtext = derive2 { name="fastrtext"; version="0.2.5"; sha256="0zbd2sxzarxic90d2pkbn7fak5gyb81b180m91f784smb3sx1p1j"; depends=[assertthat Rcpp]; };
@@ -6399,13 +6683,14 @@ in with self; {
   fbar = derive2 { name="fbar"; version="0.4.3"; sha256="1raq8ak01gcnmcsaa3fdfqi40d67v7nfjr212jzvq7wp2qk3j10i"; depends=[assertthat dplyr magrittr Matrix purrr rlang ROI ROI_plugin_ecos stringr tibble tidyr]; };
   fbati = derive2 { name="fbati"; version="1.0-3"; sha256="03a48sndphxrm4bmk0qx0lxnk4akkdpbvldq9dcnf9hxxmrfivh4"; depends=[fgui pbatR rootSolve]; };
   fbroc = derive2 { name="fbroc"; version="0.4.0"; sha256="0bxi027iqqn50mn5nrlgx3z4qdlfkrq88s0dqyaxdl8rsrwp3d2w"; depends=[ggplot2 Rcpp]; };
+  fc = derive2 { name="fc"; version="0.1.0"; sha256="0x41xfchy499kz0qi7fp12vpkbcddprv19mmk48lxzavv4f5avfh"; depends=[codetools]; };
   fcd = derive2 { name="fcd"; version="0.1"; sha256="091wbf5iskcgyr7jv58wrf590qijb0qcpninmvm3xrwxi34r37xr"; depends=[combinat glmnet MASS]; };
-  fclust = derive2 { name="fclust"; version="1.1.3"; sha256="1wpdvpfama90x8rj5yv54q7k318ad4y6pi33vsyh0rsb3fdrkqkr"; depends=[]; };
+  fclust = derive2 { name="fclust"; version="2.0.2"; sha256="032iqrnsbs2ckhlxw9gnsqxpxj38hqnrlq46k11rvyf5zlpnci99"; depends=[MASS Rcpp RcppArmadillo]; };
   fcm = derive2 { name="fcm"; version="0.1.3"; sha256="1mqk6szczsixdvw0inkypij4cw2syng5l5ccw0xk55kc21l1lzn0"; depends=[ggplot2 reshape2]; };
   fcr = derive2 { name="fcr"; version="1.0"; sha256="17jrz5zp1msd2khl1lwnb5sgxcigagni556rhn7qm9g0aykbh8yj"; depends=[face fields mgcv]; };
   fcros = derive2 { name="fcros"; version="1.5.6"; sha256="0n1zbzl6g9k3smdpgyb3xsa2w8ir4bdagv7w644x1jck5rd0xn2j"; depends=[]; };
   fcuk = derive2 { name="fcuk"; version="0.1.21"; sha256="1sb7p1m5qb88028mrw95lhh8l7dxj696hjh88nfsdpnscryknfpv"; depends=[magrittr purrr stringdist tibble]; };
-  fdANOVA = derive2 { name="fdANOVA"; version="0.1.1"; sha256="16i0mnbxyjbw06havl277c6vi7mq5rak9cjzp8c2zvr8cakalkg4"; depends=[doBy doParallel fda foreach ggplot2 magic MASS]; };
+  fdANOVA = derive2 { name="fdANOVA"; version="0.1.2"; sha256="1pycq5a4czqzi8wcfmlc9ncg827j7n0qxyj90wcv39nbcrnl3da1"; depends=[doBy doParallel fda foreach ggplot2 magic MASS]; };
   fda = derive2 { name="fda"; version="2.4.8"; sha256="0n39rzbhg1hipzn51rzmbchn2358qgapg08iv7lmiqj5y7i9qns2"; depends=[Matrix]; };
   fda_usc = derive2 { name="fda.usc"; version="1.4.0"; sha256="0gp19c5lxp0g4690vdr0gpw89rl9v3l6872mf7hr8nsyyd6776vn"; depends=[fda MASS mgcv nlme rpart]; };
   fdaMixed = derive2 { name="fdaMixed"; version="0.5"; sha256="1k2b3z2jj37j6njvxalg8640zlcvi1cm7wkcwp0pia21wydz75ip"; depends=[Formula Rcpp RcppArmadillo]; };
@@ -6416,7 +6701,6 @@ in with self; {
   fdasrvf = derive2 { name="fdasrvf"; version="1.8.3"; sha256="1lqyadg17ddd3vksbaxc7bpwvk0afsd59rfg0n5wrgvhbd473s0y"; depends=[coda doParallel fields foreach matrixcalc mvtnorm Rcpp RcppArmadillo testthat viridisLite]; };
   fdatest = derive2 { name="fdatest"; version="2.1"; sha256="0zdnmssir5jz2kbfz4f4xshjfv4pivqx7cbh2arlx6ypkjrjws8n"; depends=[fda]; };
   fdcov = derive2 { name="fdcov"; version="1.1.0"; sha256="0savsgcifcjjqrmbpn6m30gncq5iigqxpb19l710wlx8nm98svjh"; depends=[corrplot matlab]; };
-  fdq = derive2 { name="fdq"; version="0.2"; sha256="1iyplxm6niywfhmdnliy9nvvax1w6sijar8gpsj853cdfvn6kz5m"; depends=[data_table Fgmutils ggplot2 plyr randomcoloR sqldf]; };
   fdrDiscreteNull = derive2 { name="fdrDiscreteNull"; version="1.3"; sha256="17nzqy4i1c5kcqyps52827q5apyjn4znb1ql4qvfm8v2m1fvily3"; depends=[MCMCpack qvalue]; };
   fdrci = derive2 { name="fdrci"; version="2.1"; sha256="1sgrsmlz7sbr1maw3qnpzqz3z75fh5nyiibpsq8j0y12xac8d0x3"; depends=[]; };
   fdrtool = derive2 { name="fdrtool"; version="1.2.15"; sha256="1h46frlk7d9f4qx0bg6p55nrm9wwwz2sv6d1nz7061wdfsm69yb5"; depends=[]; };
@@ -6431,14 +6715,15 @@ in with self; {
   fecR = derive2 { name="fecR"; version="0.0.2"; sha256="1p4166cxajapm158aqbz9p7m8c8dqga1infl6y6wazjnayaib3cb"; depends=[lubridate plyr]; };
   fechner = derive2 { name="fechner"; version="1.0-3"; sha256="0bassigcipwlr2g8cdjh8jyhmb903k3hla9gnigcbz7qwzlfwa86"; depends=[]; };
   federalregister = derive2 { name="federalregister"; version="0.2.0"; sha256="0qr8nd3ylnwcv1wxspw5i7ray5sh30zr648spg0lpqq8dp2b8p7b"; depends=[curl httr jsonlite]; };
+  fedregs = derive2 { name="fedregs"; version="0.1.0"; sha256="1ydkw1090n8kw26d89wrzs86xq47mahdj41pgf8x1m292xcffvjm"; depends=[dplyr httr magrittr purrr rvest stringi tidytext xml2]; };
   fedreporter = derive2 { name="fedreporter"; version="0.2.1"; sha256="18hs358iyxmbh28jy9f65zvanpr6bk4gq75qbj255y1zzdsjr9x1"; depends=[httr jsonlite]; };
   feedeR = derive2 { name="feedeR"; version="0.0.7"; sha256="08mnfi96qkr1fj53ywqmya957swcwrfd3hqk0qaf2ni96sxxnp98"; depends=[digest dplyr lubridate RCurl XML]; };
   fence = derive2 { name="fence"; version="1.0"; sha256="18l3fliww60d9n9hbfdny5vr9mi78krwpjj5sypdsb77d6332h9q"; depends=[fields ggplot2 lme4 MASS sae snow snowfall]; };
-  fergm = derive2 { name="fergm"; version="0.2.1"; sha256="14asdvr98nh6rayqff9xda54w95bjg4g2f72a21rhyc932d7589g"; depends=[ergm extrafont ggplot2 matrixStats network reshape2 rstan statnet stringr]; };
+  fergm = derive2 { name="fergm"; version="1.1.4"; sha256="1d979z2m5f13i1w9d8kh9rnaafavsap169w0nycpd5j2f3dfhyn7"; depends=[ergm extrafont ggplot2 matrixStats network reshape2 rstan]; };
   fermicatsR = derive2 { name="fermicatsR"; version="1.4"; sha256="1587f67fypj22rdi1319zq765lcc9z518bzl1jr4lz6c8lrzfm9i"; depends=[]; };
   fetchR = derive2 { name="fetchR"; version="2.1-1"; sha256="0i5k40i7ryfbk1l4nn0k5hnmzhhp6970ns1j82hnih7kmdl4rlwj"; depends=[plotKML rgdal rgeos sp]; };
   ff = derive2 { name="ff"; version="2.2-14"; sha256="1w724q4jpzbvzpilb2ifviaxkjgk9lzwxz9gksnvicbmfa20fqqw"; depends=[bit]; };
-  ffbase = derive2 { name="ffbase"; version="0.12.3"; sha256="1nz97bndxxkzp8rq6va8ff5ky9vkaib1jybm6j852awwb3n9had5"; depends=[bit fastmatch ff]; };
+  ffbase = derive2 { name="ffbase"; version="0.12.5"; sha256="1h5x6rbb1nrpzf4ywkizn8ij0bz3mlz46byh46ylxhicg1ribi24"; depends=[bit fastmatch ff]; };
   ffmanova = derive2 { name="ffmanova"; version="0.2-2"; sha256="0sw8br73mx552m4b5zi4qgjcrwxflmgsnvs4mlnxh8g2gaf5bx4j"; depends=[]; };
   ffstream = derive2 { name="ffstream"; version="0.1.6"; sha256="036ikhah4y85khgfmvxwsn3vavvw1is8i9k2lw474wxlh4cxa3kd"; depends=[Rcpp]; };
   fftw = derive2 { name="fftw"; version="1.0-4"; sha256="0172kpxzjx8239r2jbcqqbpcpqygrxk36a2kmh00f73mrq0kjhc0"; depends=[]; };
@@ -6447,28 +6732,30 @@ in with self; {
   fgof = derive2 { name="fgof"; version="0.2-1"; sha256="0bclkb3as0fl2gyggqxczndfyj9pfnni5pa3inpn5msrnjg4g2j2"; depends=[mvtnorm numDeriv]; };
   fgpt = derive2 { name="fgpt"; version="2.3"; sha256="1d0qzsn4b68jhk07k97iv765jpmzzh1gwqpid0r76vg4cwqfs3n7"; depends=[]; };
   fgui = derive2 { name="fgui"; version="1.0-8"; sha256="024fzd1c7iwqprn26hwjb9l2qlvvyzl449d7iixy0x69djwsrysv"; depends=[]; };
+  fieldRS = derive2 { name="fieldRS"; version="0.1.1"; sha256="1zyi1qnyn9wi2rcf1d512dyrlkws2adp2wamzbrcbcgv8l4kysz7"; depends=[caret ggplot2 raster rgeos sp spatialEco]; };
   fields = derive2 { name="fields"; version="9.6"; sha256="1v7z48a8jmdcil28rj8c3455k6rssr5v9qi6dyhhpbb193bj8121"; depends=[maps spam]; };
-  fiery = derive2 { name="fiery"; version="1.1.0"; sha256="0251vfr7b8r4xjgcf8gyh1ddj0lj73fl0pim0k3vpzva5wmwigs1"; depends=[assertthat crayon desc future glue httpuv later R6 reqres stringi uuid]; };
-  fiftystater = derive2 { name="fiftystater"; version="1.0.1"; sha256="1nri9vsqif03xrmm3g5llasqm49hj169mgv046f2l0mh9vp0fqpc"; depends=[]; };
+  fiery = derive2 { name="fiery"; version="1.1.1"; sha256="07cfrzajr5knmz5ngczkdd2kzjfdnn1y4b0z73daxwhk4dq8j6ji"; depends=[assertthat crayon future glue httpuv later R6 reqres stringi uuid]; };
   filehash = derive2 { name="filehash"; version="2.4-1"; sha256="1x7an7rsy5pz2qr86m511rsv297vacxwk3y1a71754yq739qgq6h"; depends=[]; };
   filehashSQLite = derive2 { name="filehashSQLite"; version="0.2-4"; sha256="1higvkmj4wvnwpvayqinzaygiksij20d77dx118q0gffsczadamh"; depends=[DBI filehash RSQLite]; };
-  filelock = derive2 { name="filelock"; version="1.0.1"; sha256="11mmq296zg62gnxjk7dyr866kihihmsjpfg6bcc7hv6ivh4812nn"; depends=[]; };
+  filelock = derive2 { name="filelock"; version="1.0.2"; sha256="00ql5fw1hidpfnm0szaavf43ahmsnvdbi8i5lr1nrcc90yaiaadc"; depends=[]; };
   filematrix = derive2 { name="filematrix"; version="1.3"; sha256="1v3aj1ng742msb0sfdnjsbqb508mqjf8jlq2v33vxldhradw5w0b"; depends=[]; };
   filenamer = derive2 { name="filenamer"; version="0.2.3"; sha256="19gavhh5q7dziv0yc000w06qp58wk2cm52cxjl33p1q4cjk6gg3m"; depends=[]; };
   fileplyr = derive2 { name="fileplyr"; version="0.2.0"; sha256="15rxls0njd6j2vxdahf4fx2nxmsa3rc41812v3wlaqas99naaxxr"; depends=[assertthat datadr tibble]; };
   files = derive2 { name="files"; version="0.0.1"; sha256="1vhhawqjjbb6fadkn3l10mvz63w3vmcwvl93fk0q9mhkifzlj9kc"; depends=[]; };
-  filesstrings = derive2 { name="filesstrings"; version="2.5.0"; sha256="04axsnk1912h1i6b2qp9cxxs5jd1vkwgxzg2kjw43gnm36a7188w"; depends=[checkmate magrittr matrixStats ore purrr Rcpp rlang stringr tibble]; };
-  filling = derive2 { name="filling"; version="0.1.0"; sha256="0avlfl06nd8wn76ydii09ng2fqp92d4n9v2y5vg16m3my58l0srd"; depends=[CVXR nabor Rcpp RcppArmadillo Rdpack ROptSpace RSpectra]; };
-  finalfit = derive2 { name="finalfit"; version="0.7.8"; sha256="1jkmagr512h5vvlqyszi6zihpzbmam571bgks5js0d3wbhjs9j38"; depends=[ggplot2 gridExtra Hmisc lme4 magrittr mice plyr pROC scales stringr survival survminer]; };
+  filesstrings = derive2 { name="filesstrings"; version="2.7.0"; sha256="02v565in9sw1j01wyqmi3y42l1rgqqrkmfis808nh2lsgf6l1a0f"; depends=[checkmate magrittr matrixStats ore purrr Rcpp rlang strex stringr tibble]; };
+  filling = derive2 { name="filling"; version="0.2.0"; sha256="0yxixwgvn7jq09j4r3q33mmdda9a4anfi7y0xqscbdjz6p9bx48w"; depends=[CVXR nabor Rcpp RcppArmadillo Rdpack ROptSpace RSpectra]; };
+  finalfit = derive2 { name="finalfit"; version="0.8.7"; sha256="1xs5q8hfvs84qjkgrbsi6xxlj1bycrnrryqfbr7306l42lp1k7mf"; depends=[boot broom dplyr forcats GGally ggplot2 gridExtra Hmisc lme4 mice plyr pROC purrr scales stringr survival survminer tidyr]; };
   finch = derive2 { name="finch"; version="0.2.0"; sha256="1vganbkz2d96xfz2jf1q0kqarc575w3nswss2igynsbbd0y53mjm"; depends=[data_table digest EML hoardr plyr rappdirs xml2]; };
   findR = derive2 { name="findR"; version="0.2.1"; sha256="1a7cf6kd7i2l4ffr2b17nb9xnpsjhf6fcwpjy06r0qgcapnfp54b"; depends=[pdftools stringr]; };
   findpython = derive2 { name="findpython"; version="1.0.3"; sha256="1y08jk2ffmkf9zpwiz2xymjhfwqvls9vzsnq62v278ghw9d571jl"; depends=[]; };
   findviews = derive2 { name="findviews"; version="0.1.3"; sha256="1l1yhw5hvrn0rpkdsch8m69d2q5284jwccvv7r4ia4m0iqjfipj7"; depends=[ggplot2 gridExtra scales shiny]; };
-  fingerPro = derive2 { name="fingerPro"; version="1.0"; sha256="17r23x8cdllr8slk56dsmrwc4ns69b3cqy59mxxbsjnhjl3di6x8"; depends=[car GGally ggplot2 gridExtra klaR MASS plyr Rcmdr Rcpp RcppGSL reshape rgl scales]; };
+  fingerPro = derive2 { name="fingerPro"; version="1.1"; sha256="1a1lj8gyrbgcg8hr03cj2bjzlaafddspri7abc83ys1raqwd4j68"; depends=[car GGally ggplot2 gridExtra klaR MASS plyr Rcmdr Rcpp RcppGSL RcppProgress reshape rgl scales]; };
   fingerprint = derive2 { name="fingerprint"; version="3.5.7"; sha256="04jcwkydjrs31pia6kq8z2n9s54im950q08hs2ay15xjxxkmb8ic"; depends=[]; };
-  fingertipsR = derive2 { name="fingertipsR"; version="0.1.8"; sha256="168z59y2mqz53qhzavzynh6y11d453dd6j5928ahg6x24hjz6d4w"; depends=[curl dplyr DT httr jsonlite miniUI purrr readr shiny shinycssloaders]; };
+  fingertipsR = derive2 { name="fingertipsR"; version="0.1.9"; sha256="1sg2rsk41nxvwy7brikh685gqg5i5d9x2jralgap69qcpmy30gpv"; depends=[curl dplyr DT httr jsonlite miniUI purrr readr shiny shinycssloaders]; };
+  fingertipscharts = derive2 { name="fingertipscharts"; version="0.0.2"; sha256="12izvrmjdwy212zxgl54cbry53fv351g3vxmjw5vimqmdd991fxw"; depends=[dplyr fingertipsR geojsonio ggplot2 leaflet lemon mapproj purrr rlang scales sf stringr tibble tidyr]; };
   finiteruinprob = derive2 { name="finiteruinprob"; version="0.6"; sha256="0z4l0crymh58chxniqq70fqmvi6f5jkgvz72vbc7s3l9lrrapgr3"; depends=[numDeriv sdprisk]; };
   finreportr = derive2 { name="finreportr"; version="1.0.1"; sha256="1mansiyl4p4zqc1h2aw9zgzb3fy4mppgmshdm8mcf4nbm340g4vk"; depends=[curl dplyr httr rvest XBRL xml2]; };
+  firebehavioR = derive2 { name="firebehavioR"; version="0.1.1"; sha256="1hf7j9nqqa2i92y73c1yniw6lgmjrl8fag9r4xnkd8vpiw453ck4"; depends=[ggplot2]; };
   fishMod = derive2 { name="fishMod"; version="0.29"; sha256="0pbs4z27vwa3c42xdw3mr6l2i581bgvn2pk52kawbcnnlsff92ar"; depends=[]; };
   fishdata = derive2 { name="fishdata"; version="0.1.3"; sha256="04162m1j570cdwhffkwjs1x1qlsc20djj1jwx2hl2cqmbp584ppq"; depends=[]; };
   fisheyeR = derive2 { name="fisheyeR"; version="0.9"; sha256="1w6va7gakqq2q8hsvdszpn8s2ysdfc648bk5p5v3wbl5s403bci8"; depends=[tkrplot]; };
@@ -6478,18 +6765,18 @@ in with self; {
   fit_models = derive2 { name="fit.models"; version="0.5-14"; sha256="0vjbzmx0ambm6yzidb4vbgmhclwzwv2iz2cwl54ccdkvx4cx3fck"; depends=[lattice]; };
   fit4NM = derive2 { name="fit4NM"; version="3.3.3"; sha256="0k2194521yby6xxi77bpjp6ywz8kpnzws217m7n0hw6xwz5mqj1g"; depends=[cairoDevice gWidgets gWidgetsRGtk2 RGtk2 tkrplot]; };
   fitDRC = derive2 { name="fitDRC"; version="1.1.1"; sha256="09z9l27iwl0fd3zy6rsdhmy8qbm5d9a4wcaj5rxp7ynlnpi102aa"; depends=[]; };
-  fitODBOD = derive2 { name="fitODBOD"; version="1.1.0"; sha256="15ylldlq12mrw06pzww54hsl8nb9krs5w1cgh037km9sndsswvji"; depends=[hypergeo]; };
+  fitODBOD = derive2 { name="fitODBOD"; version="1.2.0"; sha256="00wdpvccb1xf69ry5x9aqwiid4srpibpl640fbn1xxy3gcr5vpwn"; depends=[hypergeo]; };
   fitPoly = derive2 { name="fitPoly"; version="3.0.0"; sha256="0ws1vsh8if9i9i7820ak32b0bysjc0z09nbrk17qpms0b11cpc3g"; depends=[foreach]; };
   fitTetra = derive2 { name="fitTetra"; version="1.0"; sha256="0ia6wk4gicpmn6kclsd28p7v1npwfv2blagiz0cxzwfw3njv103g"; depends=[]; };
   fitbitScraper = derive2 { name="fitbitScraper"; version="0.1.8"; sha256="0b4d7xw6inp6l1dkfwyrzxwg4vspp4vzlwrhv14ajxrqz6irj8a0"; depends=[httr jsonlite stringr]; };
   fitdc = derive2 { name="fitdc"; version="0.0.1"; sha256="1b1abib7jkl7a6r686r53qjw2ywb9q2h67is8691kkaqxpawg30p"; depends=[]; };
-  fitdistrplus = derive2 { name="fitdistrplus"; version="1.0-9"; sha256="18x9454g598d54763k3hvi33iszifk7sxvhd1zg5r8z1vpixx3z6"; depends=[MASS survival]; };
+  fitdistrplus = derive2 { name="fitdistrplus"; version="1.0-11"; sha256="12hckg3y5j3zh9q1gwxkc27q813p2r42iqp7wdfiq6nj55jrh6w6"; depends=[MASS npsurv survival]; };
   fitplc = derive2 { name="fitplc"; version="1.1-7"; sha256="1dffgqsml6cj6ayqdpr0330kj8v57jwi3pgchb8v98rainygsyfw"; depends=[car nlme]; };
   fitteR = derive2 { name="fitteR"; version="0.1.0"; sha256="1kgnyl7am966vkfap8gmvchlpankrcj5dv5aj7ws8ix9shr76db6"; depends=[dplyr DT maxLik R_utils shiny]; };
-  fitur = derive2 { name="fitur"; version="0.5.25"; sha256="0f33c4mg0257s9c0qldryihaq8p3y07j2nwghjpqhi3rv4mrg2xf"; depends=[actuar e1071 fitdistrplus ggplot2]; };
+  fitur = derive2 { name="fitur"; version="0.6.1"; sha256="04lr717lsbb4731nlzgscraj30knik4q68jzrl4i5f27912159r9"; depends=[actuar DT e1071 fitdistrplus ggplot2 goftest miniUI rstudioapi shiny]; };
   fivethirtyeight = derive2 { name="fivethirtyeight"; version="0.4.0"; sha256="1sdj5b365hi11dd2yxvg9w3fz3rx9rbv1nnhf5i8v2ydg4kqyrws"; depends=[]; };
   fixedTimeEvents = derive2 { name="fixedTimeEvents"; version="1.0"; sha256="0z7ji8yzp4pj76ad64l7ivknkbi82ijx6abd3a18wicqhrh433sj"; depends=[]; };
-  fixerapi = derive2 { name="fixerapi"; version="0.1.5"; sha256="0mp492n75wh8ws85gh5q9bbq709a78z14pipc8vjxk0fizhxwwdc"; depends=[jsonlite tibble tidyr]; };
+  fixerapi = derive2 { name="fixerapi"; version="0.1.6"; sha256="0ikf8dn0l9c9gshp4bph3wasl0bh6lfybinc8n1rvb202231hmgb"; depends=[jsonlite tibble tidyr]; };
   fizzbuzzR = derive2 { name="fizzbuzzR"; version="0.1.1"; sha256="119gbi9y4n8r52hk9vj7zf795dv9xnk7lnngljjcd7ydnhygwd4h"; depends=[]; };
   flacco = derive2 { name="flacco"; version="1.7"; sha256="1w77smmbrwglayr2rj88b00x7wan9f3x1fq8h6xyhybfvrw7vr0r"; depends=[BBmisc checkmate mlr]; };
   flam = derive2 { name="flam"; version="3.2"; sha256="0v6kcl4n7wq052p7jdgbzlh9fpk8bzlrqw12i6pib1wd3slj0asa"; depends=[MASS Rcpp]; };
@@ -6498,22 +6785,22 @@ in with self; {
   flars = derive2 { name="flars"; version="1.0"; sha256="06qma1ar1nj7n6g9alk1qydm5bkj6lsjx0pqkikxpb41d91civqk"; depends=[fda MASS Matrix Rcpp RcppEigen]; };
   flashClust = derive2 { name="flashClust"; version="1.01-2"; sha256="0l4lpz451ll7f7lfxmb7ds24ppzhfg1c3ypvydglcc35p2dq99s8"; depends=[]; };
   flatr = derive2 { name="flatr"; version="0.1.1"; sha256="10l98a3f57wahfpdqxj70r25zfhk4vzzd014pdnriy458yrfd7rw"; depends=[dplyr magrittr tibble]; };
-  flatxml = derive2 { name="flatxml"; version="0.0.1"; sha256="0rg6khx6sgxhmvh3j8m1ady8bya2904n3maynb7393rp9s8jvb9p"; depends=[RCurl xml2]; };
-  flexCWM = derive2 { name="flexCWM"; version="1.8"; sha256="0x6rmag3gdlph1xd1xbnfxxzl4rmp4z7zsvagbcwbri21ia29s14"; depends=[ContaminatedMixt mclust numDeriv statmod]; };
+  flatxml = derive2 { name="flatxml"; version="0.0.2"; sha256="1f7pc3chzimkg23490qvppy63sk4ds3aaahc36sa4dc4qmhabyms"; depends=[RCurl xml2]; };
+  flexCWM = derive2 { name="flexCWM"; version="1.9"; sha256="02afmg7d008mfgja7pqxk0fdgmgqk9vq7xy13ijancg6fm3x8prk"; depends=[ContaminatedMixt mclust numDeriv statmod]; };
   flexPM = derive2 { name="flexPM"; version="2.0"; sha256="0h3qs9w9pc2nc24q1diz7j3s93y40ijpmgq2l0xg9mzcgjz9kz8c"; depends=[survival]; };
-  flexclust = derive2 { name="flexclust"; version="1.3-5"; sha256="19ihdhmhaglccqpvrpc51367gkfafg4jdpabbk0j6mh2n16hi511"; depends=[lattice modeltools]; };
+  flexclust = derive2 { name="flexclust"; version="1.4-0"; sha256="0x7wxk8y46ndyz6fdacym0rd6p9wh3pcfr28chjcg5d7fm849zl2"; depends=[class lattice modeltools]; };
   flexdashboard = derive2 { name="flexdashboard"; version="0.5.1.1"; sha256="0fy3nbrr67zqgd44r2mc850s5sp0hzfcw3zqs15m8kxzj1aw067x"; depends=[htmltools htmlwidgets jsonlite knitr rmarkdown shiny]; };
   flexmet = derive2 { name="flexmet"; version="1.0.0.0"; sha256="0xhr4i46s3k7a4yz2sd1sphn8wz27xcl580s2kqkr1ifg8941kv8"; depends=[]; };
   flexmix = derive2 { name="flexmix"; version="2.3-14"; sha256="0sl4zxh1sb2sr5q7svjw9ihrm219jzn82yrc9d43q6r1b8bpyz43"; depends=[lattice modeltools nnet]; };
   flexrsurv = derive2 { name="flexrsurv"; version="1.4.1"; sha256="13jq7yk7rz2148wkf7dv28l79zwdf1gpfkd5khgacb8hl5kml3p0"; depends=[Epi formula_tools matrixcalc orthogonalsplinebasis survival]; };
   flexsurv = derive2 { name="flexsurv"; version="1.1"; sha256="1vj8zsfgq2rv6v7na4w7n7z3farc69qsavm7pnmnhkaylz61gq26"; depends=[deSolve mstate muhaz mvtnorm quadprog Rcpp survival]; };
   flexsurvcure = derive2 { name="flexsurvcure"; version="0.0.2"; sha256="1lhw2z8i4l822ncziwpw6hg0dzc244q60n7l5aahgdhcr0xgylhz"; depends=[flexsurv gtools survival]; };
-  flextable = derive2 { name="flextable"; version="0.4.4"; sha256="12f33szyxf4b7ipz4j9sli6miwkjq2309rpinaxmnsqsafd1zn3b"; depends=[gdtools htmltools knitr officer R6 rmarkdown stringr]; };
-  flifo = derive2 { name="flifo"; version="0.1.4"; sha256="1yilfnblarimc8mlvvwsgib5sxcfgvgsvgpyzddxb39g6fb7lffs"; depends=[bazar pryr]; };
-  flip = derive2 { name="flip"; version="2.4.3"; sha256="04zf2gnk5w57gxnlnh26pn1ir1wfrzxhfhchr33ghk7prhc7k4b8"; depends=[cherry e1071 Rcpp RcppArmadillo someMTP]; };
+  flextable = derive2 { name="flextable"; version="0.4.5"; sha256="09j2y0z7rkc0w1cl9pp1cpk6fnzzfr6245mxa3ca42z9k2cy2jfl"; depends=[gdtools htmltools knitr officer R6 rmarkdown stringr xml2]; };
+  flifo = derive2 { name="flifo"; version="0.1.5"; sha256="03x66l3ryrjvwbxxd0ncjrb5w9kc7fswmp5psb1cb7r87f395gm3"; depends=[bazar pryr]; };
+  flip = derive2 { name="flip"; version="2.5.0"; sha256="08x5hwxaxbgc745gblja7gcy0b5wbp7jf90lkha75zl5cc9iyksl"; depends=[cherry e1071 plyr someMTP]; };
   flippant = derive2 { name="flippant"; version="1.1.0"; sha256="06aj90y7c33c1q0nw1c67vr1pfmp9fw78az6ivrbq110f2k1m12w"; depends=[assertive_files assertive_numbers assertive_properties assertive_strings assertive_types data_table ggplot2 magrittr minpack_lm plyr RcppRoll stringi withr wmtsa]; };
-  flipscores = derive2 { name="flipscores"; version="0.1"; sha256="0jb9im2p3x20y356av749mni3cka2byhv7glz7qhdmsdryrdizh7"; depends=[]; };
-  float = derive2 { name="float"; version="0.1-1"; sha256="0bzwc48l4wijrxz3swrp720q9jsa74qwv6s8zpigbnjkspsqy3vi"; depends=[]; };
+  flipscores = derive2 { name="flipscores"; version="0.2"; sha256="0b55qxdrn6m0pbk4aj9zr1d9s7id6pclsaz939p48jmqx07zayjg"; depends=[]; };
+  float = derive2 { name="float"; version="0.2-0"; sha256="14kkd724knd7v1wdl6qy88izk94qa1rb9cfd8myqa3va582fc5zj"; depends=[]; };
   flock = derive2 { name="flock"; version="0.7"; sha256="1zg93p74icj4bhxnmnssj2xp6vw4yaksyavq03497v33xfpdxss7"; depends=[Rcpp]; };
   flood = derive2 { name="flood"; version="0.1.1"; sha256="0nlmjh2l7dij1aqd70hhj0m550knlin3am14azqkx4pacs1kir3p"; depends=[copula evd magrittr TLMoments]; };
   flora = derive2 { name="flora"; version="0.3.0"; sha256="1nsc2q6y02shpk70p44rr7nl7pnj6as7jgdyakxqs64imwais8x2"; depends=[dplyr httr jsonlite stringdist]; };
@@ -6525,7 +6812,7 @@ in with self; {
   flsa = derive2 { name="flsa"; version="1.05"; sha256="07z2b1pnpnimgbzkjgjl2b074pl9mml7nac2p8qvdgv7aj070cmh"; depends=[]; };
   fluoSurv = derive2 { name="fluoSurv"; version="1.0.0"; sha256="1dv4lf7k28bih2qqkpy15f7d14ibxk48p3z6sj3dj5yvh25mhv81"; depends=[]; };
   flux = derive2 { name="flux"; version="0.3-0"; sha256="0pc9cab2pwrfl0fnz29wp7a398r49hvbi50jp8i2fk2rfvck21a7"; depends=[caTools]; };
-  fluxweb = derive2 { name="fluxweb"; version="0.1.1"; sha256="0y05syshj3njzhqjpgs02ils4pzw6vfvny3nng0l9pdp55015b9g"; depends=[]; };
+  fluxweb = derive2 { name="fluxweb"; version="0.2.0"; sha256="1ssq90fqm4p0j4g171mx208lmgz3hkxs8hgsffkawpmxgacs0gh1"; depends=[]; };
   fma = derive2 { name="fma"; version="2.3"; sha256="1z7shh9ng3q7ax22cwg86y79jzz5gbchdny2rppzzm0lkvvyy5pm"; depends=[forecast]; };
   fmbasics = derive2 { name="fmbasics"; version="0.3.0"; sha256="1dnf09rgwpc7n7ydlp7r5cwy2fa4vh1h9mbjqzfhk0208kz6jpl0"; depends=[assertthat fmdates lubridate tibble]; };
   fmdates = derive2 { name="fmdates"; version="0.1.4"; sha256="1bbcwkh65nf2gak9b81zgg32c5ihwhmai3nc43ayf6ivhqsxw8x0"; depends=[assertthat lubridate]; };
@@ -6538,7 +6825,6 @@ in with self; {
   foba = derive2 { name="foba"; version="0.1"; sha256="1af8whgl66v0vwzdf03b6141k3dysdc0svymlgifcga5gqkwzsl0"; depends=[]; };
   focusedMDS = derive2 { name="focusedMDS"; version="1.3.3"; sha256="18s86dbbpyajscqr9frprf2vp1zif7vh4lw5m0cjskfc6gmsdp2p"; depends=[htmlwidgets]; };
   foghorn = derive2 { name="foghorn"; version="1.0.2"; sha256="17bng0fxjqrlni11vwmghimk0h38mlyjyxizrbs1fycb8khlqh94"; depends=[clisymbols crayon curl httr jsonlite rvest tibble xml2]; };
-  fold = derive2 { name="fold"; version="0.2.6"; sha256="09w157h1r1sgay37240v0f1a5ra97nra7fn4im4v69avpl34yxd2"; depends=[csv dplyr encode lattice lazyeval magrittr metaplot rlang spec tidyr]; };
   fontBitstreamVera = derive2 { name="fontBitstreamVera"; version="0.1.1"; sha256="0nipdlmhjv1wr3aidcl97nk6mppdkd65krgwqnhdsnv0jpfv761j"; depends=[]; };
   fontHind = derive2 { name="fontHind"; version="0.1.1"; sha256="0qz3bj8vdy6jayy84p3vyxfwqll4v4qlklwq9wl981ii2k7g0vxf"; depends=[extrafont ggplot2 hrbrthemes]; };
   fontLiberation = derive2 { name="fontLiberation"; version="0.1.0"; sha256="1w1rl0g4ayyp8lwppmz9yzj9cizg7i50g07216jkm1q5w0is9pmc"; depends=[]; };
@@ -6549,34 +6835,38 @@ in with self; {
   foolbox = derive2 { name="foolbox"; version="0.1.0"; sha256="1wqswfsanak9p0hpgbblva4b90pamlq1hcjf4xzwd3awjicsp56y"; depends=[magrittr rlang]; };
   forams = derive2 { name="forams"; version="2.0-5"; sha256="1fh3m9896ksv1h7b027yb955bzyv70yafhqvn5crkzalzk3jpb0s"; depends=[vegan]; };
   forcats = derive2 { name="forcats"; version="0.3.0"; sha256="0mxn1hng43zdjh1v8shd80hrszrqahcpaqxs1s1sif0qxh84d0cm"; depends=[magrittr rlang tibble]; };
-  foreSIGHT = derive2 { name="foreSIGHT"; version="0.9.2"; sha256="1wr99jq8a0cbc7n5sdzr0gwnxsv8sjqy1x1lrazxswyj49xc06i4"; depends=[cowplot directlabels doParallel GA ggplot2 moments zoo]; };
+  foreSIGHT = derive2 { name="foreSIGHT"; version="0.9.6"; sha256="0vz80p227fvw18rrar5d1ikz42j47jsly0h1wmiy9gww14rcnncd"; depends=[cowplot directlabels doParallel GA ggplot2 moments zoo]; };
   foreach = derive2 { name="foreach"; version="1.4.4"; sha256="0j2yj0rn0d5nbzz9nq5rqqgnxhp9pbd92q4klsarl2xpsn8119y0"; depends=[codetools iterators]; };
   forecTheta = derive2 { name="forecTheta"; version="2.2"; sha256="1a7ip3czm8k82kb8dx95m8q47kjhifdj51gzavd1zj9ni3vwbhfn"; depends=[forecast tseries]; };
   forecast = derive2 { name="forecast"; version="8.4"; sha256="13qq25b4r4fl18yl1wb441pqk98yqhi2gidy6si1kxgifq1xyp39"; depends=[colorspace fracdiff ggplot2 lmtest magrittr nnet Rcpp RcppArmadillo timeDate tseries urca uroot zoo]; };
-  forecastHybrid = derive2 { name="forecastHybrid"; version="2.2.12"; sha256="0qvn7qn5ddpiql1464rnhn7dlp015szj0v2bbs4i5v88flp831wv"; depends=[doParallel foreach forecast ggplot2 zoo]; };
+  forecastHybrid = derive2 { name="forecastHybrid"; version="3.0.14"; sha256="0n97lw1hhi9qkdp37nn66b073v0sn67i4d1aqx0rwwqz6643sqib"; depends=[doParallel foreach forecast ggplot2 zoo]; };
   forecastSNSTS = derive2 { name="forecastSNSTS"; version="1.2-0"; sha256="1rnf2a7sri52sm976iicab660qk07pmz8jmd3q71dg4hmc30yf9j"; depends=[Rcpp]; };
-  foreign = derive2 { name="foreign"; version="0.8-70"; sha256="11mql8q3i1q593dvd351fhvkvfab25li80d1ahl4xjjzy52qdkc6"; depends=[]; };
+  foreign = derive2 { name="foreign"; version="0.8-71"; sha256="1mv04w3ycz0ymsszn8aa87k6k5sb8mg8lhf1b8w4zpfrphpkkliv"; depends=[]; };
   forensic = derive2 { name="forensic"; version="0.2"; sha256="0kn8wn6p3fm67w88fbarg467vfnb42pc2cdgibs0vlgzw8l2dmig"; depends=[combinat genetics]; };
   forensim = derive2 { name="forensim"; version="4.3"; sha256="1jhlv9jv832qxxw39zsfgsf4gbkpyvywg11djldlr9vav7dlh3iw"; depends=[tcltk2 tkrplot]; };
-  forestControl = derive2 { name="forestControl"; version="0.1.1"; sha256="0qfj4qf0d1bb1wllhpg9r8gvg353zdqv7py9a3hm33yhs3l5x0g5"; depends=[Rcpp]; };
+  forestControl = derive2 { name="forestControl"; version="0.2.0"; sha256="1w1x7i57dqlrm6zzgx4k0p1zs83nrg2w2jhhvjjk9s6y1ba3whyg"; depends=[dplyr magrittr purrr Rcpp tibble]; };
   forestFloor = derive2 { name="forestFloor"; version="1.11.1"; sha256="1sslxq44qmmmdhr7800bz8lj9w2l7f7x1vly3w2z7j1qdijc7nw7"; depends=[kknn randomForest Rcpp rgl]; };
   forestinventory = derive2 { name="forestinventory"; version="0.3.1"; sha256="0brbg0q8j9ymvm527db7063kgs6i6flja7mxqk7yvaf3dh8wsi46"; depends=[ggplot2 plyr tidyr]; };
+  forestmangr = derive2 { name="forestmangr"; version="0.9.0"; sha256="1k3n6k7jf1b5pd1vp51z47hbln3cfwdb1nl2dv28jv1ba5lb7ja6"; depends=[broom car covr curl dplyr ggplot2 ggpmisc ggthemes htmltools magrittr minpack_lm plyr psych purrr rlang rmarkdown scales systemfit tibble tidyr]; };
   forestmodel = derive2 { name="forestmodel"; version="0.5.0"; sha256="09gwgsh42gkmhs8ijq5xfbbkb1hk6sjb0q32mw2ymc6x9ycr1a9j"; depends=[broom dplyr ggplot2 lazyeval tibble]; };
   forestplot = derive2 { name="forestplot"; version="1.7.2"; sha256="1cqk0fwpbn4an6xn28kpvqmcp3mgv8isg8dy755sv5fkqzzjz1dg"; depends=[checkmate magrittr]; };
   forestr = derive2 { name="forestr"; version="1.0.1"; sha256="0m26x7ngl89ngk1qhg50npmwli2npmjs9pfb9rg5hmx4fzr8k63i"; depends=[dplyr ggplot2 plyr]; };
+  forge = derive2 { name="forge"; version="0.1.0"; sha256="13s0fd3wknx824spw18jdiciglb7mjxdycbbsjm68989ic6nfcpi"; depends=[rlang]; };
   formatR = derive2 { name="formatR"; version="1.5"; sha256="19sd23vgs4ac0fwlw40j3676k6mramb0ajlq8hdw23kjwdx1jk47"; depends=[]; };
   formattable = derive2 { name="formattable"; version="0.2.0.1"; sha256="1s7jjgm0j24vdwm39933ygh6xnxcfvzy4kl2mmfgas4czfcmd4rf"; depends=[htmltools htmlwidgets knitr rmarkdown]; };
   formula_tools = derive2 { name="formula.tools"; version="1.7.1"; sha256="15d3ikfmsh9zszfgfkrxb3jkipl41inm7n6bhs73kwlnklnygq2g"; depends=[operator_tools]; };
   formulize = derive2 { name="formulize"; version="0.1.0"; sha256="1fz8q48z4zvfglxzmmjznb7lcfrrfqmnws85jfkihs3ff43h7ccc"; depends=[recipes rlang]; };
   fortunes = derive2 { name="fortunes"; version="1.5-4"; sha256="109ly9kpfn6hy294ava8795wy5z9l1bnl98hhhv8kn9naf4camdg"; depends=[]; };
+  forward = derive2 { name="forward"; version="1.0.4"; sha256="0qhssp8mymy5wgzfkp1xa8s81j803g0ckg647ind6ms26320hq0x"; depends=[MASS]; };
   forwards = derive2 { name="forwards"; version="0.1.0"; sha256="0pb101gdf2a4plalhhm34aixkss3lzfg8yj6yfi0d6khjmaza33i"; depends=[]; };
   fossil = derive2 { name="fossil"; version="0.3.7"; sha256="188hyb3r1dnxkmqf2czh1kdzmk4mjc0v1kn1zml2yvxaxk7adsrz"; depends=[maps shapefiles sp]; };
   fourPNO = derive2 { name="fourPNO"; version="1.0.4"; sha256="08l359fj39sdbq48qk05805kv25rw1wq93db0b7rvsi3iyi2lngk"; depends=[Rcpp RcppArmadillo]; };
   fourierin = derive2 { name="fourierin"; version="0.2.2"; sha256="0hy033bzybdc214z10wnbqph5f83fsr13admnzwb1d2drpbljnc8"; depends=[Rcpp RcppArmadillo]; };
   fpCompare = derive2 { name="fpCompare"; version="0.2.2"; sha256="10a87bpbpvrbrpyfx7ygyr9b7wd3fp79nd4g2ggl1gz3b1daqgxq"; depends=[]; };
   fpa = derive2 { name="fpa"; version="1.0"; sha256="0kgpl9qq0l10h0vdd2f8vnir0kdylh1jvvv5z4d9ygj1pl9qywhk"; depends=[fields reshape]; };
-  fpc = derive2 { name="fpc"; version="2.1-11"; sha256="04alsqb5gbhsjg1000d8w52pmpnlwca29r0s12f7n7mdccdv6xar"; depends=[class cluster diptest flexmix kernlab MASS mclust mvtnorm prabclus robustbase trimcluster]; };
+  fpc = derive2 { name="fpc"; version="2.1-11.1"; sha256="1ari57hkgqsxh6khr6j52cfrzc0096cnn1q7ghxk2z4brdd4rznc"; depends=[class cluster diptest flexmix kernlab MASS mclust mvtnorm prabclus robustbase trimcluster]; };
   fpca = derive2 { name="fpca"; version="0.2-1"; sha256="13b102026xlfb7c2rb3xsqsymm7xpmaxppaafjkb5dx0b1lz0jrc"; depends=[sm]; };
+  fpeek = derive2 { name="fpeek"; version="0.1.0"; sha256="0cx5ycpnk4c0q3qqn8miz0mxbz2v5cpzvl7fh2fzfig05qsvfx31"; depends=[Rcpp]; };
   fpest = derive2 { name="fpest"; version="0.1.1"; sha256="013r8295spm02j558aqvnrnbkg2g73gl5vi4lqzngbw8yr8qlkri"; depends=[]; };
   fpmoutliers = derive2 { name="fpmoutliers"; version="0.1.0"; sha256="108bp3smk9jnckd5237xly4ywmal03rq1kidq5z61l6zrhc3yfh9"; depends=[arules doParallel foreach Matrix pmml pryr R_utils XML]; };
   fpow = derive2 { name="fpow"; version="0.0-2"; sha256="0am3nczimcfrm9hi02vl2xxsh703qjmr2j11y014mll3f2v1l8cy"; depends=[]; };
@@ -6591,23 +6881,26 @@ in with self; {
   fractional = derive2 { name="fractional"; version="0.1.3"; sha256="1jz83y53s0xdphh1z3v3z7xhcmhx7rp0iiazw2vdsx2747r3rirn"; depends=[Rcpp]; };
   fragilityindex = derive2 { name="fragilityindex"; version="0.1.0"; sha256="06f7w0ff8mmydgylz5a0z29fc78spvmay3sjq0rz9k44w4bb9z3q"; depends=[pbapply stringr survival]; };
   frailtyEM = derive2 { name="frailtyEM"; version="0.8.8"; sha256="0mfhhb025wzwvch5bcvvfsljki34xahdkqli7lvqbhhihba00r1p"; depends=[expint ggplot2 magrittr Matrix msm numDeriv Rcpp survival tibble]; };
-  frailtySurv = derive2 { name="frailtySurv"; version="1.3.4"; sha256="0nsrgkfr726hkf2x3df0jgb35b6siaq7jhydzddjf4az8d08akvw"; depends=[ggplot2 nleqslv numDeriv Rcpp reshape2 survival]; };
-  frailtypack = derive2 { name="frailtypack"; version="2.12.6"; sha256="0w2v5ik4ryvl5hph9cwxcrrglwpqbyirfrayyw9g0l1wdc1mfvi4"; depends=[boot MASS nlme statmod survC1 survival]; };
+  frailtyHL = derive2 { name="frailtyHL"; version="2.2"; sha256="0i6r889i4f07w6992nfsfr439psz6k3q79nkkk3zwf5fv5r6bcky"; depends=[cmprsk Matrix survival]; };
+  frailtySurv = derive2 { name="frailtySurv"; version="1.3.5"; sha256="0hkl62srfm26z48nsg0s6yssrwdmpv17qzyd9fjkxir6ghhvxvzy"; depends=[ggplot2 nleqslv numDeriv Rcpp reshape2 survival]; };
+  frailtypack = derive2 { name="frailtypack"; version="2.13.2"; sha256="0vchpw94qn6nymx4wi991bd6v1y0r9b6d7lmwdhc7ipn8gv0sllf"; depends=[boot MASS nlme statmod survC1 survival]; };
   frair = derive2 { name="frair"; version="0.5.100"; sha256="1j557dqvc5xiz7xbl4h7vp55pc3hly8ci01qy36p02vlxhzf4hj3"; depends=[bbmle boot lamW]; };
   frambgrowth = derive2 { name="frambgrowth"; version="0.1.0"; sha256="1xmy1zxp7aa2n8frlxhn1bl41zda1jldvvxb3q41yam3pslc8m1q"; depends=[]; };
   franc = derive2 { name="franc"; version="1.1.1"; sha256="0agrzdrgfw4a3jn6a2867rf99a87ngv6wi73ys2l7gr7mkpq54v5"; depends=[jsonlite]; };
   frbs = derive2 { name="frbs"; version="3.1-0"; sha256="0ngvi7lg6aviwic8f4ya03khyzh3ksglpmsnrdjjznwj874y2wim"; depends=[]; };
-  freegroup = derive2 { name="freegroup"; version="1.0"; sha256="1x0n3mjm37b83lxa0bcylbrn1c0sdvl54mz317a8g2y2ydk7h3zi"; depends=[magrittr]; };
+  fredr = derive2 { name="fredr"; version="1.0.0"; sha256="1hv51m0ihdpb73rp2gwj2q2xpjzlqpf9p3xzqdmy9nhwpfbj14nh"; depends=[httr jsonlite rlang tibble]; };
+  freegroup = derive2 { name="freegroup"; version="1.1-0"; sha256="0ssshs2d6l2ip1xx9x581w0cdnd2459a1mh360ybwajkjgak2ci6"; depends=[magic magrittr plyr]; };
   freeknotsplines = derive2 { name="freeknotsplines"; version="1.0.1"; sha256="1yl53rnngrpj5mv1fgd0rgiqaw431g4ckxl1bq0l712647njx02a"; depends=[]; };
   freestats = derive2 { name="freestats"; version="0.0.3"; sha256="0b18n8idap089gkmjknzzb94dvs2drpdqs0mrw7dqnacxgbbqwfj"; depends=[MASS mvtnorm]; };
   freesurfer = derive2 { name="freesurfer"; version="1.6.1"; sha256="1ibhl5sbz85skkawmfdr9df6wdq6b3bl6cdvykx0gcszmd3fiabh"; depends=[neurobase R_utils reshape2]; };
-  freetypeharfbuzz = derive2 { name="freetypeharfbuzz"; version="0.1.0"; sha256="0hz9wnn1pi09v4azi02ai7hh4iwml90pdrs329y3p8qzxmvry56b"; depends=[fontquiver]; };
+  freetypeharfbuzz = derive2 { name="freetypeharfbuzz"; version="0.2.4"; sha256="1wilz554dx4glgm8nzd5gzbi6ja6gynmj3fx61s1sqas1jnby1gh"; depends=[fontquiver]; };
   freqdist = derive2 { name="freqdist"; version="0.1"; sha256="1pb45jabv9s3qa7v1isd5wm9b0g9p04q5h18spcaax8397s0d2fv"; depends=[]; };
   freqdom = derive2 { name="freqdom"; version="2.0.1"; sha256="0ig0ygnlcb5ndjjm5x8jpp37gvgwli9xv6zsvbbgfh72q418qswp"; depends=[matrixcalc mvtnorm]; };
   freqdom_fda = derive2 { name="freqdom.fda"; version="0.9.1"; sha256="15wq9s3v441dybc8kglpbv9hdvsr9rjjq4qp4d2ipxglfp0iqj9p"; depends=[fda freqdom mvtnorm]; };
   freqparcoord = derive2 { name="freqparcoord"; version="1.0.1"; sha256="011p8xh0i0x0w5rv5qz5a7fxwdhxd8l2bqi9bxv5almxd0y7ajqx"; depends=[FNN GGally ggplot2 mvtnorm]; };
   frequencies = derive2 { name="frequencies"; version="0.1.1"; sha256="0d52kf4r13n59990xhra9i6gfvs4sn7ix54d0c0g56p1rj7hnh79"; depends=[dplyr]; };
-  frequencyConnectedness = derive2 { name="frequencyConnectedness"; version="0.2.0"; sha256="02ha5jfkjaxyfp7x1h0xx32ijha2dh7h52z687a9y9azrqvjv0jp"; depends=[knitr pbapply urca vars]; };
+  frequency = derive2 { name="frequency"; version="0.3.1"; sha256="0m3vgcwldl7zv0nwdwfz80qanibmfp8j5iv79kydhrmzzr04rbf5"; depends=[DT ggplot2 gtools knitr rmarkdown]; };
+  frequencyConnectedness = derive2 { name="frequencyConnectedness"; version="0.2.1"; sha256="006cb7x65if7md5w6w90nacdmg39pv7dc8zxvchc52kmfzlps0ds"; depends=[knitr pbapply urca vars]; };
   freqweights = derive2 { name="freqweights"; version="1.0.4"; sha256="1iy2vzv4wc2883yq8r31wpspa7gm7cd4wkgvbh7mwafll463zni2"; depends=[biglm data_table dplyr FactoMineR fastcluster plyr]; };
   frite = derive2 { name="frite"; version="0.1.0"; sha256="0qi03m8n05hx0ghh12zqrjvsqhyir4q9qmxb657d4vzajmih0bhn"; depends=[assertthat magrittr purrr stringr tictoc]; };
   frm = derive2 { name="frm"; version="1.2.2"; sha256="1dl0vca9r2dams99sc13pfpi0b3yb02x59f4c1jz07zz005c8l23"; depends=[]; };
@@ -6618,7 +6911,7 @@ in with self; {
   frontier = derive2 { name="frontier"; version="1.1-2"; sha256="1vpjd57cc6niwqibhz1ib46zj57d5a9m40yaq7kr9awk9di65ryz"; depends=[Formula lmtest micEcon miscTools moments plm]; };
   frontiles = derive2 { name="frontiles"; version="1.2"; sha256="08qq25wbylvhvmq34wggyj0hwdlxfs9rfs8gjqsrg50xccchniqi"; depends=[classInt colorspace rgl sp]; };
   frt = derive2 { name="frt"; version="0.1"; sha256="1qy76a1wkznaqzlyj1nq74mf1pnyly1s8gnff8q30zfccqk68cxv"; depends=[]; };
-  fs = derive2 { name="fs"; version="1.2.3"; sha256="1kbdz8hl96b2gs5vrfnwzgimn8qf8gk6ggicr7jylxzp21zzsry5"; depends=[Rcpp]; };
+  fs = derive2 { name="fs"; version="1.2.6"; sha256="0kqqaqqml8x3r1mdld40iwns0ylj2f52qsdh1vcn39f7w7c2ka8j"; depends=[Rcpp]; };
   fscaret = derive2 { name="fscaret"; version="0.9.4.4"; sha256="18fhyfl3f8syyc3g937qx87dmwbv7dray6b97p1s6lnssiv61gsw"; depends=[caret gsubfn hmeasure]; };
   fsdaR = derive2 { name="fsdaR"; version="0.2-21"; sha256="121khfqy1ixqp86cl3cngc40zxjpd4nm5k0lk558nxcfgyyzvx8y"; depends=[rJava robustbase]; };
   fsia = derive2 { name="fsia"; version="1.1.1"; sha256="0id7cnswrqylgpwjil1zfn89ryrdpl20fim8x1srl8s1hm5bg35r"; depends=[]; };
@@ -6628,30 +6921,31 @@ in with self; {
   fsthet = derive2 { name="fsthet"; version="1.0.1"; sha256="0z6az1jcvdahgn97r6cpj1s6fn0lvr7j12gcw2r7wbpajrvyl5j6"; depends=[]; };
   ftDK = derive2 { name="ftDK"; version="1.0"; sha256="1xs2rr2afjza97kpym5zkas3k78pilxjlh7lp1gc66banldr71g2"; depends=[dplyr httr pbapply purrr tibble]; };
   ftnonpar = derive2 { name="ftnonpar"; version="0.1-88"; sha256="0df9zxwjpfc939ccnm1iipwhpf76b34v0x74nsi1mm1g927dfl0i"; depends=[]; };
-  fts = derive2 { name="fts"; version="0.9.9"; sha256="1qgp8xdwr5pp2b7nd8r717a6p8b6izwqrindx2d1d0lhhnqlcwhv"; depends=[BH zoo]; };
-  ftsa = derive2 { name="ftsa"; version="4.8"; sha256="1qwz3mk9dnf44016dy2dgpq0ivs2wzi5kq24jw3lbkgdjig2h6f5"; depends=[colorspace fda forecast MASS pcaPP rainbow sde]; };
+  fts = derive2 { name="fts"; version="0.9.9.2"; sha256="08pwhi19db173d4nsk5rl8xa8qmaddj4bn3cjxb8ql4kny59i57q"; depends=[BH zoo]; };
+  ftsa = derive2 { name="ftsa"; version="5.1"; sha256="1j8cq0fa2lkiyvaj4xcg60qz158fphakd9l2wgdv0qv1d1wsnp6g"; depends=[colorspace fda forecast MASS pcaPP rainbow sde]; };
   ftsspec = derive2 { name="ftsspec"; version="1.0.0"; sha256="12f9yws1r26i240ijq0xqprl3pgbw50wv68jsm75ycplbs2jsyhs"; depends=[sna]; };
   fueleconomy = derive2 { name="fueleconomy"; version="0.1"; sha256="1svy5naqfwdvmz98l80j38v06563vknajisnk596yq5rwapl71vj"; depends=[]; };
   fugeR = derive2 { name="fugeR"; version="0.1.2"; sha256="0kd90s91vzv0g3v9ii733h10d8y6i05lk21p5npb3csizqbdx94l"; depends=[Rcpp snowfall]; };
   fullfact = derive2 { name="fullfact"; version="1.2"; sha256="13729m2s8b32d9i9c6g2r0zkcqsw9p7nhdig8isarfn4bjzqhf71"; depends=[afex lme4]; };
-  fulltext = derive2 { name="fulltext"; version="1.0.1"; sha256="08pwasz1rpnnq81mvaldjiqv79wbvw5ma89skk95h0k2pbahblka"; depends=[aRxiv crminer crul data_table hoardr httr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble whisker xml2]; };
+  fulltext = derive2 { name="fulltext"; version="1.1.0"; sha256="195281yyjim7giim326lmk69xayw6n4xdkkym3azi6nj6a3g6f0v"; depends=[aRxiv crminer crul data_table digest hoardr httr jsonlite magrittr microdemic pdftools rcrossref rentrez rplos storr tibble xml2]; };
   fun = derive2 { name="fun"; version="0.1-0"; sha256="0z4nq2w1wz1clc7cf87pf870hayxq5mpzhllfgwj4mmh2xpphnrf"; depends=[]; };
-  funData = derive2 { name="funData"; version="1.2"; sha256="0y3ar26d6hxc4bg263qjqfb92ivhkphzizhz91wrzbfxha9dcrzz"; depends=[abind fields foreach]; };
+  funData = derive2 { name="funData"; version="1.3-2"; sha256="0qifkrw4a6hrm8msxcy1dxrfiw88xmxw8avg5ls7bginq4bfsk51"; depends=[abind fields foreach]; };
   funFEM = derive2 { name="funFEM"; version="1.1"; sha256="08798lvryykrxfvp2297anzl4gi81gwvc1qyyzq16nafjf65kwfy"; depends=[elasticnet fda MASS]; };
-  funHDDC = derive2 { name="funHDDC"; version="2.0"; sha256="0bd58pdsg9036vk54fayvzr6il56bamrvn5vhqc3g92papp9jlm8"; depends=[fda MASS]; };
-  funModeling = derive2 { name="funModeling"; version="1.6.7"; sha256="0blanw0aw7qvcs6a8ryaqvi322gaz65g6flijkbssf681im9pmjr"; depends=[dplyr entropy ggplot2 gridExtra Hmisc lazyeval moments pander RColorBrewer reshape2 ROCR scales]; };
+  funHDDC = derive2 { name="funHDDC"; version="2.2.0"; sha256="1s4k6wvs6x88c7whw0bkb3pfhp8wqcmzlsv8div9df0i2fisf3zr"; depends=[fda MASS]; };
+  funLBM = derive2 { name="funLBM"; version="1.0"; sha256="0krx5v1lakrrxk0j249k7sr7c6r40yg1l8l10laf4444j2qn8rjp"; depends=[fda funFEM]; };
+  funModeling = derive2 { name="funModeling"; version="1.6.8"; sha256="16kivxwxds4lmhag2y17bsjpfp08ms17w4n5wznmlvpa3sc7qp1z"; depends=[dplyr entropy ggplot2 gridExtra Hmisc lazyeval moments pander RColorBrewer reshape2 ROCR scales]; };
   funbarRF = derive2 { name="funbarRF"; version="1.0.1"; sha256="05smi717j4zhbrfqjyvx1rzckygigg1x8c6kb3brbpv8w33gcvx7"; depends=[BioSeqClass Biostrings bold randomForest]; };
   funchir = derive2 { name="funchir"; version="0.1.4"; sha256="1mbsy65628q117c2k01wvibpjd3ibigy4yc1c8m0rf9jwsc67qjb"; depends=[data_table]; };
   functional = derive2 { name="functional"; version="0.6"; sha256="120qq9apg6bf39n9vnp68db5rdhwvnj2vi12a8j8243vq8kqxdqr"; depends=[]; };
   functools = derive2 { name="functools"; version="0.2.0"; sha256="0g62jdia3n09vq8mx1m2r4nl3jfcadzpym0wkldzzzjcfs90vl6b"; depends=[]; };
-  funcy = derive2 { name="funcy"; version="0.9.0"; sha256="1b6ckqi2sqg324309l0mqcjpqy5idmm71s30axflr5bcrhxkkiz3"; depends=[calibrate car caTools cluster fda fields flexclust kernlab MASS Matrix plyr sm wavethresh]; };
-  fungible = derive2 { name="fungible"; version="1.5"; sha256="1f4q26rfl7d35ng5nx11mzzv9fhk4zg62j63c59i649wcx1xsan9"; depends=[e1071 lattice MASS mvtnorm nleqslv R2Cuba stringr]; };
+  funcy = derive2 { name="funcy"; version="1.0.0"; sha256="13r3n28fpzg4siqsdgwklgm7y38mjpd6dglwdpn8fyiirh1xmas0"; depends=[calibrate car cluster fda fields flexclust kernlab MASS Matrix plyr sm wavethresh]; };
+  funique = derive2 { name="funique"; version="0.0.1"; sha256="0p9k4nxjns1xid9vmslkaap0hm6yq6pbyvylgygd808if4q1z8k6"; depends=[]; };
   funnelR = derive2 { name="funnelR"; version="0.1.0"; sha256="143lb048krgh8rkkz6sm8h464kdy62w29fvvyar795vqi10bb5fy"; depends=[ggplot2]; };
   funr = derive2 { name="funr"; version="0.3.2"; sha256="11mjd1ba9kwawh7k5py54mkq4g1df79d7qivan8fj11qfwfzm679"; depends=[]; };
   funrar = derive2 { name="funrar"; version="1.2.2"; sha256="179kxhwkd431d2n917mzjnr5qvh09f0hdm2c78lww4ijb54dhn0l"; depends=[cluster dplyr]; };
   funreg = derive2 { name="funreg"; version="1.2"; sha256="199zvqali0sb0z4yp20rm5da0kd7z3rgv47g1cb1apsbcw0cq51n"; depends=[MASS mgcv mvtnorm]; };
   funtimes = derive2 { name="funtimes"; version="5.0"; sha256="0xq0n3939rsrz7dna4d3d7mrpxad2xswnblsc4a88nbq6cmx5c70"; depends=[dbscan Jmisc Kendall]; };
-  furniture = derive2 { name="furniture"; version="1.7.9"; sha256="16nz028cgfhhn4xvhkzy6y1a1p6x4xfzna50q4jaih0pd980i07a"; depends=[knitr magrittr]; };
+  furniture = derive2 { name="furniture"; version="1.8.0"; sha256="1f1s0zwishm73rgdj93z1975manc3a7v51mzz1478h0jp5kd2pql"; depends=[cli crayon dplyr knitr magrittr rstudioapi tibble]; };
   furrr = derive2 { name="furrr"; version="0.1.0"; sha256="1ld9aa9hydna94hgm6p91zjbfv1dz1vsgchjlpknkg6irbvkfafx"; depends=[future globals purrr rlang]; };
   fuser = derive2 { name="fuser"; version="1.0.1"; sha256="17lsfpd9hdichj3wflac896zyjbq7a8w2gmlgj8nbgg80f646fgr"; depends=[glmnet irlba Matrix Rcpp RcppEigen RSpectra]; };
   fusionclust = derive2 { name="fusionclust"; version="1.0.0"; sha256="1h03nlk4gnz4j5h2h5bxazkka2qq983h7nglm1ghzqvbqjk6sv37"; depends=[bbmle]; };
@@ -6661,73 +6955,77 @@ in with self; {
   futile_options = derive2 { name="futile.options"; version="1.0.1"; sha256="0w15agpi88y3qkv6fl72zy2pzyplzgvnj41a4ixhg64mw1sck73s"; depends=[]; };
   futile_paradigm = derive2 { name="futile.paradigm"; version="2.0.4"; sha256="14xsp1mgwhsawwmswqq81bv6jfz2z6ilr6pmnkx8cblyrl2nwh0v"; depends=[futile_options RUnit]; };
   futility = derive2 { name="futility"; version="0.2"; sha256="0njckhwmawqhiznv241yjghh99wl72c4xknp9nzbmvi5j575rnlh"; depends=[]; };
-  future = derive2 { name="future"; version="1.8.1"; sha256="1bpx6b85dd8xq37527h72qszz2dg810xcp975z93hymk1d8hf41a"; depends=[digest globals listenv]; };
-  future_BatchJobs = derive2 { name="future.BatchJobs"; version="0.15.0"; sha256="0r1bnp9mnv8jk9d6dpr94cqn4zihpm7cgxqj0c3l0x9b6i0ny3z2"; depends=[BatchJobs future R_utils]; };
-  future_apply = derive2 { name="future.apply"; version="1.0.0"; sha256="1jippm805hda75h24grp9pwypf10cp4m4hq55vni7qa9qhyi7r2x"; depends=[future globals]; };
-  future_batchtools = derive2 { name="future.batchtools"; version="0.7.0"; sha256="0sk2qs6fgq241zibjxkmvdgv7xq0lablwwd6px6rxi7asxjv7zbh"; depends=[batchtools future]; };
-  future_callr = derive2 { name="future.callr"; version="0.3.0"; sha256="0z9gmy46n823y38hq4xgc1x3v88hmz5sdfa6xsp0mk1bwlc94q8f"; depends=[callr future]; };
+  future = derive2 { name="future"; version="1.10.0"; sha256="07dmb5gn29pjaya3ljmpbag1wk27i3dr63mcxgjgzkfj9dgshp32"; depends=[digest globals listenv]; };
+  future_BatchJobs = derive2 { name="future.BatchJobs"; version="0.16.0"; sha256="1j4gjgqy2hikpl9x1jf0qvncyi5dsfz3hi4v4x0kw7hzlsgc6f00"; depends=[BatchJobs future R_utils]; };
+  future_apply = derive2 { name="future.apply"; version="1.0.1"; sha256="1i5apv9ywwb5xhq4g0lk5q1sy23zhdvdsrx8fax3nyprinvw5a7l"; depends=[future globals]; };
+  future_batchtools = derive2 { name="future.batchtools"; version="0.7.1"; sha256="0mgppqzw6qgm8dhp9kxh1nb3xpp8mw2aj1m1yaj3wivkb22fdicn"; depends=[batchtools future]; };
+  future_callr = derive2 { name="future.callr"; version="0.3.1"; sha256="0h1nm65f36bpb6anjiyrb3vni5rzx4x047l0a396d2321cxszv7l"; depends=[callr future]; };
   futureheatwaves = derive2 { name="futureheatwaves"; version="1.0.3"; sha256="122b2z86bzxfch67y6cpq8wj62mw0dgkzbmnpwi247kdx7w5mw1f"; depends=[data_table dplyr ggplot2 ggthemes leaflet Rcpp stringr tidyr]; };
   fuzzr = derive2 { name="fuzzr"; version="0.2.2"; sha256="1cwq7a5j6lzrlz9dw3hsfap988rh1kkgf03yni7c33zl69xp5w77"; depends=[assertthat progress purrr]; };
   fuzzyFDR = derive2 { name="fuzzyFDR"; version="1.0"; sha256="0zd8i9did0d9gp42xjmwrccm32glabvvy08kl8phhwb1yaq53h7w"; depends=[]; };
   fuzzyRankTests = derive2 { name="fuzzyRankTests"; version="0.3-10"; sha256="1xj5xsm2s4ylv3b8v80qny201iddjym07h8d50asas7xy1k7945z"; depends=[]; };
   fuzzyforest = derive2 { name="fuzzyforest"; version="1.0.5"; sha256="1ifhvdzn0rs8gxqmpz8w1prxg3pxs5jqx5lh0r4i5rai49qjy3sb"; depends=[doParallel doRNG foreach ggplot2 mvtnorm randomForest]; };
   fuzzyjoin = derive2 { name="fuzzyjoin"; version="0.1.4"; sha256="06r103hshc6xcjllv5qfiw3i1ddz4c8svy0i4j0avnffaarlc2wa"; depends=[dplyr geosphere purrr stringdist stringr tidyr]; };
-  fuzzyreg = derive2 { name="fuzzyreg"; version="0.3"; sha256="1mg4c71d0yc42y4iqdwkw13nlkq09parp2xwi1fv700vmnn4gk5w"; depends=[limSolve quadprog]; };
+  fuzzyreg = derive2 { name="fuzzyreg"; version="0.4"; sha256="1m6vfagd5qnxdmdh2ya0vmz8jvbf0fwn95zgqcjwgvmwyafkw5m8"; depends=[limSolve quadprog]; };
   fuzzywuzzyR = derive2 { name="fuzzywuzzyR"; version="1.0.3"; sha256="1kbli1m44317m95a0r34vza9p27vd9ala05jrbrdkadninwdynal"; depends=[R6 reticulate]; };
   fwdmsa = derive2 { name="fwdmsa"; version="0.2"; sha256="0p0kh8am6gajfaixkvq61f12hfbm6chl9372yzn1yilhiyvqdxgp"; depends=[]; };
   fwi_fbp = derive2 { name="fwi.fbp"; version="1.7"; sha256="1wk9cr0kk6zkbf111bv87n7b1wwx1qrsbjxydvbjvy8bgz0nfa62"; depends=[]; };
-  fwsim = derive2 { name="fwsim"; version="0.3.3"; sha256="1ix4sl2krlr0b0wfgvy73qhpmkjymqcci3q3v60j20zapi55gxn2"; depends=[Rcpp]; };
+  fwsim = derive2 { name="fwsim"; version="0.3.4"; sha256="0fy87c1x5hihfcppv1pvk3b0pwl6ygqpka40x55gbpkgssdigb1l"; depends=[Rcpp]; };
   fxregime = derive2 { name="fxregime"; version="1.0-3"; sha256="15fh8yhcba2gw2xfd0yiw5ssvbgb62l6vb28bxz71ckdyv9nsahk"; depends=[car sandwich strucchange zoo]; };
   g_data = derive2 { name="g.data"; version="2.4"; sha256="14a4m0v38p3j1k1kymkxwydlgm8b73hlx9m80sg1l4aj38fvflzl"; depends=[]; };
   g2f = derive2 { name="g2f"; version="0.2"; sha256="1jsmiv6v8ilpxg1k1npcgqa467hpyw7mzh5m8dp7bxar4j5npsp4"; depends=[KEGGREST minval sybil]; };
+  g3viz = derive2 { name="g3viz"; version="0.1.3"; sha256="0c1filziyp6bqi7i92xcrip10hs0rwxxcnawhqll80jk66lc1kl2"; depends=[cgdsr htmlwidgets jsonlite stringr]; };
   gCat = derive2 { name="gCat"; version="0.1"; sha256="10990ilsjk52kqkcdngj4nq0kcbn4w1syxl1mqjq2n5g1l002yjy"; depends=[]; };
+  gDefrag = derive2 { name="gDefrag"; version="0.1"; sha256="1xzp12p7w4gsy88hjl1n0ylymjbm3wqypqavkb97if94mwhlfqsh"; depends=[igraph maptools rgdal rgeos sp]; };
   gIPFrm = derive2 { name="gIPFrm"; version="3.1"; sha256="08rfdac442picbw1r3xyxjzf2dc57svg44am0714z4r72mshvj04"; depends=[]; };
   gLRTH = derive2 { name="gLRTH"; version="0.2.0"; sha256="1drmmr576n3pbr0q1cnnx4k7r4iz061n2cizv1kpr3wcc1g291pn"; depends=[]; };
-  gMCP = derive2 { name="gMCP"; version="0.8-13"; sha256="19chbcqiw13rppp7s7y8vf42spwnna78xl2mb37n96s23fpj3qpf"; depends=[CommonJavaJars JavaGD MASS Matrix multcomp mvtnorm PolynomF rJava xlsxjars]; };
+  gMCP = derive2 { name="gMCP"; version="0.8-14"; sha256="11q2d4a352z7c0ln10mdpms1cl4bh5hqmg9avmbxw54z4i00mdvy"; depends=[CommonJavaJars JavaGD MASS Matrix multcomp mvtnorm PolynomF rJava xlsxjars]; };
   gMOIP = derive2 { name="gMOIP"; version="1.1.0"; sha256="122yzwicsq7q98x5dxk1mmf148v2w64jz3pd3535himx85gy9zy3"; depends=[ggplot2 ggrepel]; };
   gMWT = derive2 { name="gMWT"; version="1.1"; sha256="1ws96x3vjswh6m6s9zn3r9gp7xp6ybdkkxsq9a73ng2zqz2qjdl0"; depends=[clinfun Rcpp RcppArmadillo]; };
   gPCA = derive2 { name="gPCA"; version="1.0"; sha256="1ylb1d24dxnzpws9bbanwhyizjr3ljky2bhrph4c5yaq0zwwbrkw"; depends=[]; };
   gPdtest = derive2 { name="gPdtest"; version="0.4"; sha256="00dlhnklfg2yp4hp7yjgr2nfswv22c007xq1mxdbkll62zgd94mq"; depends=[]; };
-  gProfileR = derive2 { name="gProfileR"; version="0.6.6"; sha256="1n6cj12j102b4x9vhyl4dljp1i0r43p23cnhqbx4als2xfxdlqgi"; depends=[plyr RCurl]; };
+  gProfileR = derive2 { name="gProfileR"; version="0.6.7"; sha256="12nwidbnqmnfy5dnqga26byslvdnkrpz2fi19qfcby6xx0wbndk7"; depends=[plyr RCurl]; };
   gRain = derive2 { name="gRain"; version="1.3-0"; sha256="0xb746pyh8k8w1a8nz7z41bflx5xr0cqdq5l5wj7j464zv2cw6jy"; depends=[functional graph gRbase igraph magrittr Rcpp RcppArmadillo RcppEigen]; };
   gRapfa = derive2 { name="gRapfa"; version="1.0"; sha256="07yzwzna9pdyzndxk6wwyl6v3gkfc7dvy1ixmdl3d38mcl1ahwyq"; depends=[igraph]; };
-  gRbase = derive2 { name="gRbase"; version="1.8-3"; sha256="143qvs5mwypswdq344a48kzn83sx9jskdr9w6kxa3fzhdcqlhi7d"; depends=[graph igraph magrittr Matrix RBGL Rcpp RcppArmadillo RcppEigen]; };
+  gRbase = derive2 { name="gRbase"; version="1.8-3.4"; sha256="0b6cl9p3px99vw9jx8wdcm4sh8v7zr6l4w0mk7ilrgbwzg198pyk"; depends=[graph igraph magrittr Matrix RBGL Rcpp RcppArmadillo RcppEigen]; };
   gRim = derive2 { name="gRim"; version="0.2-0"; sha256="0ihl4vsnp6xkcpcf37p2xcqnbvyvjamcz5060f1kirn8xzwzq29y"; depends=[gRain graph gRbase igraph Rcpp RcppArmadillo]; };
   gSEM = derive2 { name="gSEM"; version="0.4.3.4"; sha256="18kh41ibvfflz59gykiq7j2c6a72i8b0w8c2mcprd1nzhnyhvmhy"; depends=[DiagrammeR htmlwidgets knitr MASS]; };
   gSeg = derive2 { name="gSeg"; version="0.5"; sha256="1f3appvy78adv9jll47smgw2apm3dkm9zrm17hhdxmcnqypd7ias"; depends=[]; };
+  gStream = derive2 { name="gStream"; version="0.1.0"; sha256="02ww3s3pc7x8kvi697rfilpl5swi33v4k0q5wkv4rf6mc319m5qk"; depends=[]; };
   gTests = derive2 { name="gTests"; version="0.2"; sha256="1h1sd8mrzcniq7rx7frdlxwpnsn8lifng1x99fqq703hs3znl1yq"; depends=[ade4]; };
   gWQS = derive2 { name="gWQS"; version="1.1.0"; sha256="03v6b90745nd0jxil39rgay1yh1lrg9p1wbi22yffd29a2arsf22"; depends=[ggplot2 Rsolnp tableHTML ztable]; };
   gWidgets = derive2 { name="gWidgets"; version="0.0-54"; sha256="13lbbbnmkvb559klgsnz0q27qlyv102xakb6yccxsxjw249hm8c2"; depends=[]; };
   gWidgets2 = derive2 { name="gWidgets2"; version="1.0-7"; sha256="02jrv5x7s3jm2ajpdvgsp4zkn65gjy96rvgdxhf9smp1kb6llzg0"; depends=[digest]; };
   gWidgets2RGtk2 = derive2 { name="gWidgets2RGtk2"; version="1.0-7"; sha256="14c933j0wj3lb5da75zxg3w3mfqh0nqk8rczbi4dnqd8sna6jks9"; depends=[gWidgets2 memoise RGtk2]; };
-  gWidgets2tcltk = derive2 { name="gWidgets2tcltk"; version="1.0-5"; sha256="1g0p7bl76rkkrixzw4b1s99gyvi8b5a4vbnsj2wmy7y9grbzndkm"; depends=[digest gWidgets2 memoise]; };
+  gWidgets2tcltk = derive2 { name="gWidgets2tcltk"; version="1.0-6"; sha256="0arh0yxx63m4df1ccrv0q3vkjncwv3ink8vkalp6ashi2932yfma"; depends=[digest gWidgets2 memoise]; };
   gWidgetsRGtk2 = derive2 { name="gWidgetsRGtk2"; version="0.0-86"; sha256="0b1xqffbzxlaaaqf1vzfl0a7b6wnnslsp8v5fbxblv7w951rsc4m"; depends=[cairoDevice gWidgets RGtk2]; };
   gWidgetstcltk = derive2 { name="gWidgetstcltk"; version="0.0-55"; sha256="06991rqh4927bal7j718bn2ziy6rws8yq682lmp5vbqhdd36afv2"; depends=[digest gWidgets]; };
   gafit = derive2 { name="gafit"; version="0.5.1"; sha256="160z3cv22prf7118447dla9g1gimwkfad8zdil3fg8n4l22rk51a"; depends=[]; };
   gaiah = derive2 { name="gaiah"; version="0.0.2"; sha256="1qc3crjxramyxl86dp8mcmvskixny7x6ji0jqf5dqf5r5qc7zrs9"; depends=[dplyr geosphere ggplot2 lazyeval magrittr maptools raster rgeos sp stringr tidyr]; };
   gains = derive2 { name="gains"; version="1.2"; sha256="1nmrhc7qjlyzn04r1qyjdws5fin3idmi789kbxzilax12ya8xr7k"; depends=[]; };
+  galgo = derive2 { name="galgo"; version="1.4"; sha256="1v150flk1x0rixpgvi8crd5iq28w4jk8h2iyv48hz5qmm2pvz1li"; depends=[e1071 MASS nnet R_oo randomForest rpart]; };
   galts = derive2 { name="galts"; version="1.3.1"; sha256="0jg0yng1kc6s0qdhq8ps38dsxdcrgdcn8dl2dlclw6rcbknb6h4k"; depends=[DEoptim genalg]; };
-  gam = derive2 { name="gam"; version="1.15"; sha256="1w6icadyfyqlkz5qijwifa3z96d460m88k8b2iaqj0cf6agmydhy"; depends=[foreach]; };
+  gam = derive2 { name="gam"; version="1.16"; sha256="0blg4gghw5068z180c4bf0s77ky0wspgsi6xpcfnkf2rkvj34182"; depends=[foreach]; };
   gamCopula = derive2 { name="gamCopula"; version="0.0-4"; sha256="1nj5pxcbr6k7k1m44ky306yycpx20pw8awlx7lzyw1rx1hrv5ivb"; depends=[copula doParallel foreach gsl igraph MASS mgcv numDeriv VineCopula]; };
   gamRR = derive2 { name="gamRR"; version="0.4.0"; sha256="0grd9d7rar4lq82v55k7c2d3h0g2lh7ny4bpxanqgrq02jkpnz1p"; depends=[boot mgcv]; };
   gamair = derive2 { name="gamair"; version="1.0-0"; sha256="13n2n4b7givzvia93awy7ym0gihl4lr08w3a6ny2pq0f3zbhzw97"; depends=[]; };
-  gambin = derive2 { name="gambin"; version="2.3.0"; sha256="1kwh8s191m6gsjczqc3svf6zp1k4zi86rqz7s94rahg84vwh6a9b"; depends=[doParallel foreach gtools]; };
+  gambin = derive2 { name="gambin"; version="2.4.0"; sha256="0fbn553g61l524x7yraj89plrbf66ywgy674b5hyfcfkx0xaim8n"; depends=[doParallel foreach gtools]; };
   gamboostLSS = derive2 { name="gamboostLSS"; version="2.0-1"; sha256="06n2xk7k24gz95jy1cr6shpfd89ylispq6mn3fvxblqdf8vhdixj"; depends=[mboost stabs]; };
   gamboostMSM = derive2 { name="gamboostMSM"; version="1.1.87"; sha256="0if0x92lch57ksll8d5i3jzk0kh40593b20c17g3hvc33920c7r0"; depends=[mboost]; };
   gamclass = derive2 { name="gamclass"; version="0.58"; sha256="0dldqnbdgrafkm1a9kb0gyyfs0s2g31iv4ndlnnm2rd63ga4xxsn"; depends=[ape car DAAG KernSmooth lattice latticeExtra MASS mgcv randomForest rpart]; };
   games = derive2 { name="games"; version="1.1.2"; sha256="01hbbr2hsxi5j9axpdl0jihpd55pa9hacjxmab8p7cixk3xqqqbf"; depends=[Formula MASS maxLik stringr]; };
-  gamesGA = derive2 { name="gamesGA"; version="1.1.3.2"; sha256="0srxsm1zhrx1dpm94mkcsds6rwkx9gi9yfbrkzylhrxgi4g8pvwp"; depends=[shiny]; };
+  gamesGA = derive2 { name="gamesGA"; version="1.1.3.5"; sha256="1xvy0azyjcr077lwpnh6083ypv0j8qjd0frkc6z6vs6fgbv2lv5p"; depends=[shiny]; };
   gamlr = derive2 { name="gamlr"; version="1.13-5"; sha256="0fc27b6qcm01drb7pb14wri2hlb464jig3x7sb8njwrxcqqia14n"; depends=[Matrix]; };
-  gamlss = derive2 { name="gamlss"; version="5.1-0"; sha256="00hiy8k3hls8igkcl2yzgx15mmj4f305zssav5bwsxwijj4m4pv6"; depends=[gamlss_data gamlss_dist MASS nlme survival]; };
+  gamlss = derive2 { name="gamlss"; version="5.1-2"; sha256="0sq1gvsj4ydmyz3xip5565c15022rz98p979lp39i3wafrs4wh0d"; depends=[gamlss_data gamlss_dist MASS nlme survival]; };
   gamlss_add = derive2 { name="gamlss.add"; version="5.0-1"; sha256="1agk6pfm04hf9dp5r6dvxqkj1hykx23a16q7vch2sg752z0dadgk"; depends=[gamlss gamlss_dist mgcv nnet rpart]; };
   gamlss_cens = derive2 { name="gamlss.cens"; version="5.0-1"; sha256="1s83dgifidvc6cbrqirwlvwfzg08mlhmxxiqkbmnsy09i5j9fzd3"; depends=[gamlss gamlss_dist survival]; };
-  gamlss_data = derive2 { name="gamlss.data"; version="5.0-1"; sha256="0q0ah8x141172fxh25bk913zzs5njyn24xkah23px1zsh4684gsy"; depends=[]; };
+  gamlss_data = derive2 { name="gamlss.data"; version="5.1-0"; sha256="1hg63z4pybmlihnckv9r5nxckx7rjss2rkajgrkraqxal6747b8a"; depends=[]; };
   gamlss_demo = derive2 { name="gamlss.demo"; version="4.3-3"; sha256="01p6abppwbnh2a2ks1g08z4iwq2fxf125y9s4qzssybsn76a3gf3"; depends=[gamlss_dist gamlss_tr rpanel]; };
-  gamlss_dist = derive2 { name="gamlss.dist"; version="5.0-6"; sha256="0xz0968diww9h2z2wgq2h5bgxx3h8nsv0yy4kapcay4ds1nkfyzx"; depends=[MASS]; };
+  gamlss_dist = derive2 { name="gamlss.dist"; version="5.1-0"; sha256="0cfp7l1sw4q1n0f5zvb3gzp5q94w3f2ylvvi1fgdlyzbrjmf5fdc"; depends=[MASS]; };
   gamlss_mx = derive2 { name="gamlss.mx"; version="4.3-5"; sha256="1jfs3ib2imwgazf8v23fa12iaflv0pm944bkqklx8qcljxp1lcs7"; depends=[gamlss gamlss_dist nnet]; };
   gamlss_nl = derive2 { name="gamlss.nl"; version="4.1-0"; sha256="083l5lsb0csxcp4vffvdv2nr7jk3s2gkcavx66m8inzw16j7xilz"; depends=[gamlss survival]; };
   gamlss_spatial = derive2 { name="gamlss.spatial"; version="2.0.0"; sha256="1pgmlc6i7p5mjb1pc7b861yjl2gwr37bbzj3j2dl0qzybrs742mx"; depends=[gamlss gamlss_add gamlss_dist mgcv spam]; };
-  gamlss_tr = derive2 { name="gamlss.tr"; version="5.0-0"; sha256="02akydpvwl1qkhxpr72lv9qp4z2ra69abyq51b57rh4p60g78vhm"; depends=[gamlss gamlss_dist]; };
+  gamlss_tr = derive2 { name="gamlss.tr"; version="5.1-0"; sha256="1px9lhwad13s544g4ba8m7nxxd425jyakh6x1p4byxl8bn9w9qgr"; depends=[gamlss gamlss_dist]; };
   gamlss_util = derive2 { name="gamlss.util"; version="4.3-4"; sha256="0p8lnwrn7cx97qnxls1x532f3ywszdyib2qiwx5qc7sam59h9c8j"; depends=[gamlss gamlss_dist zoo]; };
   gamlssbssn = derive2 { name="gamlssbssn"; version="0.1.0"; sha256="1l8d4qwmq9dklm9imb3cvlncwa6jygf8kg2j1599h1nfhyyhj2vv"; depends=[gamlss gamlss_dist MASS]; };
   gamm4 = derive2 { name="gamm4"; version="0.2-5"; sha256="11wblnh22xq3m3z25i30v2kd0zlf8wa3cm5z38z56rhk3l2wf5bc"; depends=[lme4 Matrix mgcv]; };
@@ -6741,10 +7039,11 @@ in with self; {
   gapfill = derive2 { name="gapfill"; version="0.9.6"; sha256="0384v7capab7dbyvz6b2jvnh840z6ab3857my0h3cgsys3lhn3c5"; depends=[fields foreach ggplot2 quantreg Rcpp]; };
   gapmap = derive2 { name="gapmap"; version="0.0.4"; sha256="0xz19n0vvdzbfg6afp3y0qfbs3f2nfxib1cyya3cax5wqqfbzw3i"; depends=[ggplot2 reshape2]; };
   gapminder = derive2 { name="gapminder"; version="0.3.0"; sha256="067cra1ca4ngwjx8d1y9pyzwcpsfi1wcal0glzyy6ghd1k6jflpv"; depends=[tibble]; };
+  garray = derive2 { name="garray"; version="1.0.2"; sha256="07z5rdzk3bg4w31pdaarb0lmq26caqrn7mj396rmxrfq1l3l0bfm"; depends=[]; };
   gaselect = derive2 { name="gaselect"; version="1.0.5"; sha256="0xzx00n46x6x7w1xbx8nvabkkrna45pv1i70787m8h05q1yrjjij"; depends=[Rcpp RcppArmadillo]; };
-  gasfluxes = derive2 { name="gasfluxes"; version="0.2-1"; sha256="0cdqyyqb5dcn5978jmwmf06d9jcga5ma72zf3cdz72hbcil4f93k"; depends=[AICcmodavg data_table MASS sfsmisc]; };
+  gasfluxes = derive2 { name="gasfluxes"; version="0.4"; sha256="1shjyksnqq2sjv8k2qidx9k1s6clh3lfvffdwxqbm3lp7wqzlmg6"; depends=[AICcmodavg data_table MASS sfsmisc]; };
   gastempt = derive2 { name="gastempt"; version="0.4.01"; sha256="0jfk82yw7a95ih1s8ir432j79ix8vjbprwzr5fkzgykk07lfwm68"; depends=[assertthat BH dplyr ggplot2 nlme Rcpp RcppEigen rstan shiny StanHeaders stringr tibble]; };
-  gaston = derive2 { name="gaston"; version="1.5.3"; sha256="0y49rgsnzbikm1162awxlamjc2djnxqd9j8if9si4gbmkkp90iwm"; depends=[Rcpp RcppEigen RcppParallel]; };
+  gaston = derive2 { name="gaston"; version="1.5.4"; sha256="1yjl100z6cakpfd1gqryigpclyslygzvhps7w6gyrp85yipj5i0r"; depends=[Rcpp RcppEigen RcppParallel]; };
   gatepoints = derive2 { name="gatepoints"; version="0.1.3"; sha256="02qxxf4a6rl3l0jdgqxmzxfnqd9lh5i0q2knaxxsiz0nd74c1jg5"; depends=[]; };
   gaussDiff = derive2 { name="gaussDiff"; version="1.1"; sha256="0fqjdxp2ibbami75ba16d02dz4rz5sk8mni45di9anydx44g9d45"; depends=[]; };
   gaussfacts = derive2 { name="gaussfacts"; version="0.0.2"; sha256="095x7k7m7sy1gqkbm6wiqn26252dclz62sbnkv6cjvmbdxajl7m9"; depends=[]; };
@@ -6752,14 +7051,15 @@ in with self; {
   gazepath = derive2 { name="gazepath"; version="1.2"; sha256="0h5a9bpgx268yh0zy3y4xfvij1ncx92x5qphjc94xmzbrl0br1mf"; depends=[jpeg scales SDMTools shiny zoo]; };
   gb = derive2 { name="gb"; version="2.3.3"; sha256="0gkdkbwr168vi7lgccla49l43rkmjcfrwlqdr65mg5syzcxrh7nh"; depends=[boot KernSmooth]; };
   gbRd = derive2 { name="gbRd"; version="0.4-11"; sha256="06x97rw5i6v6cgjxkfhxnw4dn7lghn5q6ra7ri5ag1x9dkfzcl82"; depends=[]; };
-  gbfs = derive2 { name="gbfs"; version="1.0.0"; sha256="1kikbsdmh8v2s3kabmfpbwzzwxkzadqz7xpn5ng90npl3j8zaps6"; depends=[devtools dplyr jsonlite lubridate readr roxygen2 stringr testthat withr]; };
-  gbm = derive2 { name="gbm"; version="2.1.3"; sha256="0ayrpq5qm18dsain088mbw0037bijxcy342grb6g2qnp67llpwpa"; depends=[lattice survival]; };
+  gbfs = derive2 { name="gbfs"; version="1.1.0"; sha256="1c68p384fh53vi73xjk6kg51q62w49r74d1miyhxg5w56bwyw9n4"; depends=[dplyr jsonlite lubridate readr stringr]; };
+  gbm = derive2 { name="gbm"; version="2.1.4"; sha256="0lp11s911y2xf9wn9288jl80qqc9wh2jrk49lxsjm94lbws51zli"; depends=[gridExtra lattice survival]; };
   gbm2sas = derive2 { name="gbm2sas"; version="2.1"; sha256="0ssjlv849vssmncn01ccpp2myqib5f3g88g0d4rqma2z0ivdpk23"; depends=[gbm]; };
   gbp = derive2 { name="gbp"; version="0.1.0.4"; sha256="0awg724gsfwlb0fjcvw0450qdsk4m8x8is16pj5c8fx6nc8rn8bv"; depends=[data_table magrittr Rcpp RcppArmadillo rgl]; };
   gbs2ploidy = derive2 { name="gbs2ploidy"; version="1.0"; sha256="0gdjfqs9ccyaw7vi22wbyc742n1badr5ypr08g6rvi8ka5lmx836"; depends=[MASS rjags]; };
   gbts = derive2 { name="gbts"; version="1.2.0"; sha256="1v8x4dnja8va28rjznyqa6js9wazndijasb95lfj2qwhxhgf5h65"; depends=[doParallel doRNG earth foreach gbm]; };
-  gbutils = derive2 { name="gbutils"; version="0.2-1"; sha256="0br5b1l5dwq65v6d85mki6fpcz4y819ji7w5pgfl3h312q5s627v"; depends=[]; };
-  gcKrig = derive2 { name="gcKrig"; version="1.1.1"; sha256="0bfxwi3ahhgyn1mh00b27iwz3cgabz74r00q4bhl45wjps4vngc3"; depends=[Rcpp RcppArmadillo]; };
+  gbutils = derive2 { name="gbutils"; version="0.4-0"; sha256="01ka10k599c8q7l55jzkrvqlxhzdanc4xnmsh6js5ji5yr7v385f"; depends=[Rdpack]; };
+  gcForest = derive2 { name="gcForest"; version="0.2.7"; sha256="10fjha76sgnrkhwjm0rm4hrbn0643p9dsyb5ahw43x8m5kmw2ydq"; depends=[cli crayon pkgdown reticulate]; };
+  gcKrig = derive2 { name="gcKrig"; version="1.1.2"; sha256="1wqmw56805bny8w6zdj5zn4c89p3x39d5pkp4xslpd5f623zvf6x"; depends=[Rcpp RcppArmadillo]; };
   gcbd = derive2 { name="gcbd"; version="0.2.6"; sha256="1dvnly0aljv2c4x7sn3q55ncvfdfjfgp7w0k2900p77h4w8nixia"; depends=[DBI lattice Matrix plyr reshape RSQLite]; };
   gcdnet = derive2 { name="gcdnet"; version="1.0.5"; sha256="159dl8v1n7s9wnfrjb6f0b3ssblkqgbfzs15vjxhc8xkz0jp9z1c"; depends=[Matrix]; };
   gcerisk = derive2 { name="gcerisk"; version="18.02.22"; sha256="1wy9l4s17ji5xj1cxjnb59qz3242yjs4zp76fy3rg1m0k7ib52vg"; depends=[cmprsk ggplot2 survival]; };
@@ -6774,7 +7074,7 @@ in with self; {
   gdistance = derive2 { name="gdistance"; version="1.2-2"; sha256="0lqpxsg01ibkaq50qyccdhsl2sbb4kh9bcfifs1yzsg45bq27jf8"; depends=[igraph Matrix raster sp]; };
   gdm = derive2 { name="gdm"; version="1.3.11"; sha256="1bsy8fjzc0034hxw5n4ip4lkwr38fiyvw9q21bk17sxn44cnnxz4"; depends=[doParallel foreach raster Rcpp reshape2 vegan]; };
   gdmp = derive2 { name="gdmp"; version="0.1.0"; sha256="1dlzxf17ssm10pw14mk5lk0plgav2mj8xf39dacyg9hlrz9pjwki"; depends=[]; };
-  gdns = derive2 { name="gdns"; version="0.2.1"; sha256="0dvrknhx0d00yi429zjdcs3ghgbpfjhrclkn6cicd049qdp4q396"; depends=[dplyr httr jsonlite purrr stringi tibble]; };
+  gdns = derive2 { name="gdns"; version="0.3.1"; sha256="1vydl7jacldidzx1hhqang9fw8zar8wy4cgdmr9pbw22ffw2qq7s"; depends=[httr jsonlite stringi]; };
   gdpc = derive2 { name="gdpc"; version="1.1.0"; sha256="1q1c9pypkb8dv6bvgizaca4p43krc52fvlvjz9l6nkpazr1qx33d"; depends=[doParallel foreach Rcpp RcppArmadillo xts zoo]; };
   gds = derive2 { name="gds"; version="0.1.0"; sha256="0kc3l93640x8d6g3pa9gbr7ci5hmryg9i1nqpasgnvb6ixv6azbm"; depends=[]; };
   gdtools = derive2 { name="gdtools"; version="0.1.7"; sha256="122k9spymawfnfyksxyapwq9cigydy5nrjwhrwrhy3qkax3aycf6"; depends=[Rcpp withr]; };
@@ -6785,15 +7085,15 @@ in with self; {
   geecure = derive2 { name="geecure"; version="1.0-6"; sha256="0nmnrkfgblv38qvk66bdk8933icr59mayqwljkvmpy59sm6br2k5"; depends=[geepack MASS Matrix survival]; };
   geepack = derive2 { name="geepack"; version="1.2-1"; sha256="13fkz38rsdk1byv6rdpdmphz5dd31r4h8ms49hali6hjh5rydzvy"; depends=[]; };
   geesmv = derive2 { name="geesmv"; version="1.3"; sha256="0gm953z8q5cc1adl3d6vj5djg2inc880zfcdl5gd56fnb5gl6h1w"; depends=[gee MASS matrixcalc nlme]; };
-  geex = derive2 { name="geex"; version="1.0.3"; sha256="0px197mz3qfx7s4wfdjlgjpss03y7wid1qa34xf4xan05dnrrnzc"; depends=[lme4 Matrix numDeriv rootSolve]; };
+  geex = derive2 { name="geex"; version="1.0.11"; sha256="19qqgr16cd4zsmfgl9ny92ncvf1418ilvhb9h3axw24mkycins61"; depends=[lme4 Matrix numDeriv rootSolve]; };
   geigen = derive2 { name="geigen"; version="2.2"; sha256="0wfd87xd438ri0a9m9dz46jfy4wpm75skc3iyppx80d03kijvcig"; depends=[]; };
   geiger = derive2 { name="geiger"; version="2.0.6"; sha256="1zry3iclj7yciiiysbq6z0kn759c7hdy5fq0dcszkskqcd92qfz1"; depends=[ape coda colorspace deSolve digest MASS mvtnorm ncbit Rcpp subplex]; };
   gelnet = derive2 { name="gelnet"; version="1.2.1"; sha256="10ygdfz9f5xhahlqb2divwvaljhiz8jhsd12wvq0qalx0v1h5j0p"; depends=[]; };
   gem = derive2 { name="gem"; version="0.19"; sha256="11gzqpc9s1bkx1w6ncjylmfqqf3wj5hgca4lzygvlni9xz7pk517"; depends=[signal]; };
-  gemlog = derive2 { name="gemlog"; version="0.26"; sha256="1cbm9rd2zwih5glj5nkmavb27j21dhsrrrr1d0ss6faf00nprbfq"; depends=[signal]; };
+  gemlog = derive2 { name="gemlog"; version="0.30"; sha256="1cznlgl0gwqih63w6vfxj1ln7qfsa60c5l3wx9pri0ngcx75p9rn"; depends=[signal]; };
   gems = derive2 { name="gems"; version="1.1.1"; sha256="174mjnpldb0rwjvwdgpcg1acm526gs0pjf9gi5mn9d3x9yz4r5jx"; depends=[data_table MASS msm plyr]; };
   gemtc = derive2 { name="gemtc"; version="0.8-2"; sha256="0c2a9gz6rvsc5qh66ixxa4dz6lwhcmmsf2vnvxl98c9kbvdwfqm9"; depends=[coda igraph meta plyr Rglpk rjags truncnorm]; };
-  genBaRcode = derive2 { name="genBaRcode"; version="1.0.0"; sha256="0313kyhy9bg9rabxk2jdgxq2brhj2kkiq0xyd3mlq6j9c626pqi8"; depends=[ape Biostrings ggnetwork ggplot2 igraph network phangorn RColorBrewer reshape2 S4Vectors shiny ShortRead stringdist visNetwork]; };
+  genBaRcode = derive2 { name="genBaRcode"; version="1.1.0"; sha256="1x7hf80bqfl6ghd9vk878a86dacphp15wdw9zb198ax083q3jydm"; depends=[ape Biostrings doParallel dplyr foreach futile_logger ggnetwork ggplot2 ggseqlogo ggtree igraph network phangorn RColorBrewer reshape2 S4Vectors shiny ShortRead stringdist VennDiagram visNetwork]; };
   genBart = derive2 { name="genBart"; version="1.0.1"; sha256="12z5vj41npwawz954zqkjfmg9inh063ilh7m82pn73asrxif0ay3"; depends=[clValid data_table fastcluster ggplot2 gtools limma NMF pca3d psych qusage RColorBrewer reshape2 rmarkdown scales shiny shinydashboard shinyjs statmod stringr VennDiagram]; };
   genMOSS = derive2 { name="genMOSS"; version="1.2"; sha256="18qinckzz7wsw222skrq30izbj6s85i8hq6iicj9nng8gh6jydr8"; depends=[ROCR]; };
   genMOSSplus = derive2 { name="genMOSSplus"; version="1.0"; sha256="1n3ngx1piy3l14k5k95wrgvrjw9238jkygfqanl3xg2na2mmkr26"; depends=[]; };
@@ -6812,9 +7112,10 @@ in with self; {
   genemodel = derive2 { name="genemodel"; version="1.1.0"; sha256="1x6n6k9ifv2swhyrghvm6fsz5vh85cdik8225175i9msvmkh928n"; depends=[stringr]; };
   genepi = derive2 { name="genepi"; version="1.0.1"; sha256="1whhdlq9p8gmygv7464hvfz6dhm65gqq1dqls6hgpmw822zxgbd5"; depends=[]; };
   genepop = derive2 { name="genepop"; version="1.0.5"; sha256="17s3azcq1fjjqi5n8rw071k1as4nnwvppmdaz2l5scn0wv120vcq"; depends=[Rcpp]; };
-  generalCorr = derive2 { name="generalCorr"; version="1.1.1"; sha256="1ihp9pksi47f3fsv7wgrp1z4ylmf5n57n6h27v130mi7k5lh1gdy"; depends=[meboot np psych xtable]; };
-  generalhoslem = derive2 { name="generalhoslem"; version="1.3.2"; sha256="1c6mmgdxdm384fl9yqpij3fvjzzima10knljsf50hl4q9f66lvag"; depends=[MASS reshape]; };
+  generalCorr = derive2 { name="generalCorr"; version="1.1.2"; sha256="19kr8gs41lxfn2k6azz3200p3c98fhq63skx9ga3glas8cmxph0i"; depends=[meboot np psych xtable]; };
+  generalhoslem = derive2 { name="generalhoslem"; version="1.3.3"; sha256="1pg8ff2c061rx1b698v2kva16rzydqrn935vb1pwbr63h8lgkv7x"; depends=[MASS reshape]; };
   generator = derive2 { name="generator"; version="0.1.0"; sha256="0xjvnmnpdms8rrxxcz6pd8w4rnbv3ghzqv4m63zxia2l98x7z4rf"; depends=[]; };
+  generics = derive2 { name="generics"; version="0.0.1"; sha256="02y0d6iafrw70mxdgg99cb720dlfqdr4mhpda0frp8315257c69f"; depends=[]; };
   genesysr = derive2 { name="genesysr"; version="0.9.1"; sha256="0cwx00bikhr32h2mxnd9v5z80zjy3y9i7b30achhlrjzvylh6q4j"; depends=[httr jsonlite]; };
   genetics = derive2 { name="genetics"; version="1.3.8.1"; sha256="0gfbrpz0zp5bgw3s21wrhjfy70laif47wcrjrm6mjgs6xapiw790"; depends=[combinat gdata gtools MASS mvtnorm]; };
   genie = derive2 { name="genie"; version="1.0.4"; sha256="0ymrn42ik0rfildmyq4z0gsd7injda0dsjgx69nqb6hq0x8s5hqa"; depends=[Rcpp]; };
@@ -6835,41 +7136,42 @@ in with self; {
   geoBayes = derive2 { name="geoBayes"; version="0.5.1"; sha256="18m1qxzq97rddbxk99za5yfdcq6nyy4nxgikylfpsb2mxanjxyx2"; depends=[coda sp]; };
   geoCount = derive2 { name="geoCount"; version="1.150120"; sha256="1kcjqls91r6p8ykn901c5p3v2lzbyainahhjpnr5c3a57v8s73ms"; depends=[Rcpp RcppArmadillo]; };
   geoGAM = derive2 { name="geoGAM"; version="0.1-2"; sha256="0q09pk2npn4hjymklwfrhz2ybmjpcb6kvqkpn9l3a6cdjgk6bkmj"; depends=[grpreg MASS mboost mgcv]; };
-  geoR = derive2 { name="geoR"; version="1.7-5.2"; sha256="1sy968x154bsc3i3a6mxcwnyixcnmab5bc07dgibi9vzn0nkbbpb"; depends=[MASS RandomFields sp splancs]; };
+  geoR = derive2 { name="geoR"; version="1.7-5.2.1"; sha256="1fb3xm85i36q9l5lspa6fjfa82mv8fnwl30rimrlamss02ff959q"; depends=[MASS RandomFields sp splancs]; };
   geoRglm = derive2 { name="geoRglm"; version="0.9-11"; sha256="0qf3nm0snrmplbwgcac0iinni7h2wqm13lm34zzfl00idzv0k9b9"; depends=[geoR sp]; };
   geoSpectral = derive2 { name="geoSpectral"; version="0.17.4"; sha256="0i2k5k66gmf7zvipcd0a489rnpj14j4a4xw9k5dccpj6ybwd47l7"; depends=[dplyr leaflet maps plotly rbokeh rgdal sp spacetime xts]; };
   geoaxe = derive2 { name="geoaxe"; version="0.1.0"; sha256="043y7kb24hp66j7pnpqsdixvdmppwp72y8i4f8q7xrkhaqlfb93v"; depends=[jsonlite rgeos sp]; };
-  geoelectrics = derive2 { name="geoelectrics"; version="0.1.5"; sha256="0zy9m5k4b359mn29cd62cnwjm4fc19hy3l8p587yrrhsi20nbyna"; depends=[fields lattice rgl]; };
+  geodetector = derive2 { name="geodetector"; version="1.0-3"; sha256="1x6mr05976vdxxgcb4fd3v7mq2lanrl44nqz6f6rk2dy3yhdqi5c"; depends=[maptools rgdal rgeos sp]; };
+  geodist = derive2 { name="geodist"; version="0.0.1"; sha256="15x0p34qcac8v2ldf7hs4h28z44hvjqqidf5g0x2k6rz7692aqpd"; depends=[]; };
+  geoelectrics = derive2 { name="geoelectrics"; version="0.2.0"; sha256="1dmpaf16750ni4yr36cglfz9pv9jax8jxb3kwn47kxgnx3l8qq98"; depends=[fields lattice rgl]; };
   geofacet = derive2 { name="geofacet"; version="0.1.9"; sha256="0z9xd24hn9j8azd4kal81lz72zy6vv9rvwx1jsmkq7z7f1wwly48"; depends=[geogrid ggplot2 ggrepel gridExtra gtable imguR rnaturalearth sp]; };
   geofd = derive2 { name="geofd"; version="1.0"; sha256="16312g9mgw52mpsfky1j20zcqkkv91ihl0xhvv1bl80diffzf0zi"; depends=[fda geoR]; };
-  geogrid = derive2 { name="geogrid"; version="0.1.0"; sha256="1aiar70cy8rf7hc7kwc2g3p02x3zmp6nf9vfjjrjm94mb7yr8s48"; depends=[Rcpp RcppArmadillo rgeos sf sp]; };
-  geohash = derive2 { name="geohash"; version="0.3.0"; sha256="1yabnf0a6jd4r6zh83sxb9wcn4vs8csp7c80qs6pi1nx016lirx7"; depends=[Rcpp]; };
+  geogrid = derive2 { name="geogrid"; version="0.1.0.1"; sha256="1skklrv2k0a0wi86q5d5mn7ma028ggl1pby7gpl3jssh7bgxw8wp"; depends=[Rcpp RcppArmadillo rgeos sf sp]; };
   geojson = derive2 { name="geojson"; version="0.2.0"; sha256="1xvbkdaaf55x015pflvcdy06ayrmhqi3my0sdqb48z129rdbr3i7"; depends=[jqr jsonlite lazyeval magrittr protolite sp]; };
-  geojsonR = derive2 { name="geojsonR"; version="1.0.4"; sha256="0248lb1kgj43czp5z4q7dcrq6ra0jhq62q9x79mgyb83bqn940h8"; depends=[R6 Rcpp RcppArmadillo]; };
+  geojsonR = derive2 { name="geojsonR"; version="1.0.6"; sha256="17zcrkazcnn1507m5cpphzp14m40w1wzrhrb77rl5hn1jrxqvhh5"; depends=[R6 Rcpp RcppArmadillo]; };
   geojsonio = derive2 { name="geojsonio"; version="0.6.0"; sha256="10vi40ppy65yg655xy0j8zl6icn7d7icwfj4a84wpp28pd1bwic8"; depends=[geojson httr jqr jsonlite magrittr maptools readr rgdal rgeos sf sp V8]; };
   geojsonlint = derive2 { name="geojsonlint"; version="0.2.0"; sha256="05j7059s1hs8i2fkmkv0mqmda3bgk5zbyi865ab0vl361wiwmdya"; depends=[httr jsonlite jsonvalidate V8]; };
-  geojsonsf = derive2 { name="geojsonsf"; version="1.1"; sha256="050dcyhsjjysfp263g1f35aixrdh85zfzkg7dyhn47nr9cfgrss8"; depends=[curl rapidjsonr Rcpp]; };
-  geoknife = derive2 { name="geoknife"; version="1.5.5"; sha256="0azb98zk4ayfm0z9vz5h59490xvng16p3gpdn60ca9mwdikyxks3"; depends=[curl httr sp XML]; };
+  geojsonsf = derive2 { name="geojsonsf"; version="1.2"; sha256="08db4rx9m8q2cz2vzp48421r2whb7bwlls35l893zfqni9yhib89"; depends=[curl jsonify rapidjsonr Rcpp]; };
+  geoknife = derive2 { name="geoknife"; version="1.6.1"; sha256="128y2m9aggcrfz2ynw2rzbq76rp61db1glzwhhc3n4rh25j974ic"; depends=[curl httr progress sp whisker xml2]; };
   geomapdata = derive2 { name="geomapdata"; version="1.0-4"; sha256="1g89msnav87kim32xxbayqcx1v4439x4fsmc8xhlvq4jwlhd5xxw"; depends=[]; };
   geomedb = derive2 { name="geomedb"; version="0.2"; sha256="1nsf7xzqayk8zbw3b6xpgiqk2w2kzc896gjswzxq128xw05cia0a"; depends=[ape httr]; };
-  geomerge = derive2 { name="geomerge"; version="0.3.0"; sha256="12r60rxsi6x30q8h7mx0m50avvssm493qzyxiva7nglydcmhjn9r"; depends=[geosphere ggplot2 gridExtra inlmisc lubridate raster scales sp spdep]; };
-  geometa = derive2 { name="geometa"; version="0.2-0"; sha256="1dz23jgix8sxnb69hb7jd41kdqifkf95jmcg2f6zqncqa6qg7glk"; depends=[R6 XML]; };
+  geomerge = derive2 { name="geomerge"; version="0.3.1"; sha256="0pvyhpv4vq8mvvlybxhviq8rbazw29dgf9m0xnldaxg9r6lqdp4d"; depends=[geosphere ggplot2 gridExtra inlmisc lubridate raster scales sp spdep]; };
+  geometa = derive2 { name="geometa"; version="0.3-0"; sha256="0cw29a4zsqvqyj4zmvk92752k65yhxxjqmqp0kl0pnidl18vbp46"; depends=[R6 XML]; };
   geometry = derive2 { name="geometry"; version="0.3-6"; sha256="0s09vi0rr0smys3an83mz6fk41bplxyz4myrbiinf4qpk6n33qib"; depends=[magic]; };
   geomnet = derive2 { name="geomnet"; version="0.2.0"; sha256="0xanzx8p34bac4zcf9j69nivwhllvsrw7x70mzgl95jhg3gvv96a"; depends=[dplyr ggplot2 network plotly readr sna tidyr]; };
-  geomorph = derive2 { name="geomorph"; version="3.0.6"; sha256="1iqz8qzcdrxvz1iywkzbwia40sxj7fkw3mcncdddb9dnq016cfdy"; depends=[ape geiger jpeg Matrix rgl]; };
+  geomorph = derive2 { name="geomorph"; version="3.0.7"; sha256="1q9qdpb08kfs1xs5s9xjxh98wb3hqilqynwzihlz1hsv38p99y38"; depends=[ape geiger jpeg Matrix rgl RRPP]; };
   geonames = derive2 { name="geonames"; version="0.998"; sha256="1p0x260i383ddr2fwv54pxpqz9vy6vdr0lrn1xj7178vxic1dwyy"; depends=[rjson]; };
-  geonapi = derive2 { name="geonapi"; version="0.1-0"; sha256="1i0pr4zrl06ym947parxk083f1b5p58bdbpm842viq1qqwavfj6z"; depends=[geometa httr openssl R6 XML]; };
+  geonapi = derive2 { name="geonapi"; version="0.2-0"; sha256="1d3dxmnxdmdbz4kfg87mrk6ddachgb0fqvmhpscfzagwfhcs19zw"; depends=[geometa httr openssl R6 XML]; };
   geoops = derive2 { name="geoops"; version="0.2.0"; sha256="0n9n0j849jbqv6y6lqhyhddr5zfz8i9yi03gpg9862nzkvxd3c4k"; depends=[Rcpp]; };
   geoparser = derive2 { name="geoparser"; version="0.1.1"; sha256="0rk2wcig79r28a974bc181p8vypxzbgxcb9rsp24qj9mg02rn5n5"; depends=[digest dplyr httr jsonlite lazyeval purrr stringr tidyr]; };
   geophys = derive2 { name="geophys"; version="1.4-1"; sha256="1s64sbr0chv0z2vaw059khfkv8iga1kr6428kkglgafq5x2d6h3q"; depends=[cluster GEOmap RFOC RPMG RSEIS]; };
-  georob = derive2 { name="georob"; version="0.3-6"; sha256="01gq9ymqk3zyjs5n7nj27ky2bnhc7x7npbipa5bcq7jda6gxirhr"; depends=[abind constrainedKriging fields lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; };
-  geosapi = derive2 { name="geosapi"; version="0.2-0"; sha256="15w2rd0scv0aywngp2h7nzbgh4ddbgnf54scd454ixgv67m99p5f"; depends=[httr openssl R6 XML]; };
+  georob = derive2 { name="georob"; version="0.3-7"; sha256="1bs54qmj9qwh0pxllmsvc6camw8mk44538yhm164xbm9l344s1vz"; depends=[abind constrainedKriging fields lmtest nleqslv nlme quantreg RandomFields robustbase snowfall sp]; };
+  geosapi = derive2 { name="geosapi"; version="0.3-0"; sha256="0yl2iaynhx0zgfcfkqp9hbyjh27fzhyra7q30ks9v48s0rhjv1mx"; depends=[httr openssl R6 XML]; };
   geoscale = derive2 { name="geoscale"; version="2.0"; sha256="0gisds0in32xhw54fxfyxvwxgrfjs871wmqf6l915nr896rlx0bm"; depends=[]; };
   geospacom = derive2 { name="geospacom"; version="0.5-8"; sha256="14qyjbq0n43c2zr9gp11gdqgarvmicx3gpq2ql2vjfzrmirxwjgg"; depends=[classInt geosphere maptools rgeos sp]; };
   geosphere = derive2 { name="geosphere"; version="1.5-7"; sha256="186qdm5niq7v3d4w4rngx71znsgi44hnam7698bsx9ar5mg5b6wx"; depends=[sp]; };
   geospt = derive2 { name="geospt"; version="1.0-2"; sha256="1814nn0naxvbn0bqfndpmizjbqcs6rm87g2s378axkn6qpii4bh8"; depends=[fields genalg gsl gstat limSolve MASS minqa plyr sgeostat sp TeachingDemos]; };
   geosptdb = derive2 { name="geosptdb"; version="0.5-0"; sha256="0m0dlazhq2za71mi3q8mz2zvz7yrmda7lha02kh9n820bx89v33z"; depends=[FD fields geospt gsl limSolve minqa sp StatMatch]; };
-  geostatsp = derive2 { name="geostatsp"; version="1.7.1"; sha256="141mvwkqk2jpyggmzvm604s37h92gbmzch3d84dq3ng29mc507s2"; depends=[abind Matrix numDeriv raster sp]; };
+  geostatsp = derive2 { name="geostatsp"; version="1.7.2"; sha256="0g1yvdj0bgdpq4mhcyy5yvsb4azm982vknbyzrr2415szv1910kb"; depends=[abind Matrix numDeriv raster sp]; };
   geotech = derive2 { name="geotech"; version="1.0"; sha256="18s7w6h1svc4n1hcgj5njfkf3nflkc53cdwsq5112p3442rlz33f"; depends=[]; };
   geotools = derive2 { name="geotools"; version="0.1"; sha256="0d0vf9dvrrv68ivssp58qzaj8vra26ms33my097jmzmgagwy1spd"; depends=[]; };
   geotoolsR = derive2 { name="geotoolsR"; version="1.0"; sha256="1arbyb1q96ya3smn9sqzqji5v21x37iyyxmvlmqmjj75an8ix5dp"; depends=[dplyr geoR ggplot2 tidyr]; };
@@ -6877,51 +7179,52 @@ in with self; {
   geozoning = derive2 { name="geozoning"; version="1.0.0"; sha256="0cqdi2jgqrxc339qkr57dp11jp40x99f9inwamnh7ymg2q7kq14s"; depends=[deldir fields ggplot2 gstat maptools RandomFields raster rgeos sp]; };
   geozoo = derive2 { name="geozoo"; version="0.5.1"; sha256="0g91yhg7zw1bp0lxxblr2irckjg2rl4pg1vgglccnmxkzn0ji2qi"; depends=[bitops]; };
   gepaf = derive2 { name="gepaf"; version="0.1.1"; sha256="0n36w40jrq3qkgmhz9wrnhp6fczw7bm96g950sa4nq33872xhfgm"; depends=[bitops]; };
-  germinationmetrics = derive2 { name="germinationmetrics"; version="0.1.0"; sha256="1s6mygiwmz2cgg2dcsah4ssnj5hfilf7hfdzvv3qd57imicrlkk5"; depends=[broom ggplot2 ggrepel minpack_lm plyr Rdpack]; };
+  germinationmetrics = derive2 { name="germinationmetrics"; version="0.1.1.1"; sha256="1za2vkprdl2hdpww3p4x5l1ddkcrq6jxj1chhbbq4w31blpvg5hm"; depends=[broom ggplot2 ggrepel minpack_lm plyr Rdpack]; };
   gesca = derive2 { name="gesca"; version="1.0.4"; sha256="1ndn8wgp22pr017x6v7jw8jy4gd06x8110qa860hw8i6pn47wfwv"; depends=[]; };
   gesis = derive2 { name="gesis"; version="0.2.1"; sha256="1cdmhfdjiwsp48a7b0r1mnagnymz606mkzpam9fsvfl72vzji2w7"; depends=[httr rvest xml2]; };
-  gestalt = derive2 { name="gestalt"; version="0.1.1"; sha256="0gcvd61dyyq29gf2v3kg1y474diwi0hl28rb4w8zf11ac9lc0jvz"; depends=[rlang]; };
-  getCRUCLdata = derive2 { name="getCRUCLdata"; version="0.2.4"; sha256="1468bxmy2iv1kzjnyh5y035lxmi8wfssjk0cjx63i6dg38bhq4cz"; depends=[data_table dplyr hoardr httr raster tibble tidyr]; };
+  gestalt = derive2 { name="gestalt"; version="0.1.4"; sha256="1krmn19cxmbd4l0x5nzhypkr04dv7s82rnnk97szni4wdy2ih892"; depends=[rlang]; };
+  getCRUCLdata = derive2 { name="getCRUCLdata"; version="0.2.5"; sha256="0wg1b92wmqccskkihq1qj4i1yrih4kb1c2b6wvl13bhz1p4xi7vn"; depends=[data_table dplyr hoardr httr raster tibble tidyr]; };
   getMet = derive2 { name="getMet"; version="0.3.2"; sha256="0j1h1vy8rd7czpnb4msdb9k560pnh7kjkmpqqwzwin2ms1c0mggb"; depends=[EcoHydRology jsonlite]; };
   getPass = derive2 { name="getPass"; version="0.2-2"; sha256="03ydafhh0sk3rcnpr3paajyji64x2ddp6p814p9mvbmyrblcgzcc"; depends=[rstudioapi]; };
-  getTBinR = derive2 { name="getTBinR"; version="0.5.4"; sha256="1xf5b98j4b07namkhmzwmp1xhsn9g42p2zy38xhz4823x13q9yn6"; depends=[data_table dplyr ggplot2 ggthemes magrittr plotly purrr scales tibble tidyr viridis]; };
+  getProxy = derive2 { name="getProxy"; version="1.12"; sha256="0qcxihgwy3h2b98z2hwjszwqbz117d89xjys7fy0f8m9hv7rf6ph"; depends=[bitops data_table dplyr httr jsonlite RCurl]; };
+  getTBinR = derive2 { name="getTBinR"; version="0.5.5"; sha256="0plpymf74j4q76mp5pi6692zs3vz7r466pracphb49bpl3a3nvqp"; depends=[data_table dplyr ggplot2 ggthemes magrittr plotly purrr scales tibble tidyr viridis]; };
   getlandsat = derive2 { name="getlandsat"; version="0.2.0"; sha256="15450v93lc4i2qda0zlb5vplwbarkmf3f6sb4rlrdpv9vlj85hff"; depends=[crul data_table rappdirs readr tibble xml2]; };
   getmstatistic = derive2 { name="getmstatistic"; version="0.1.1"; sha256="14w0n658s624anvxv7sqcgy6vfaaxcc7fj4xi1k2qrxd9rdh6dza"; depends=[ggplot2 gridExtra gtable metafor psych stargazer]; };
   getopt = derive2 { name="getopt"; version="1.20.2"; sha256="13p35lbpy7i578752fa71sbfvcsqw5qfa9p6kf8b5m3c5p9i4v1x"; depends=[]; };
-  gets = derive2 { name="gets"; version="0.15"; sha256="1sz225bymjp2mrklpjagh6x622kpcvh21r0rmimd1mjhqbg0p9vs"; depends=[zoo]; };
+  gets = derive2 { name="gets"; version="0.16"; sha256="0ipnf8jlirwvr9zjyw7dxmm8vqjznlw2k7iy56pm2hyc70ssyxw8"; depends=[zoo]; };
   gettz = derive2 { name="gettz"; version="0.0.3"; sha256="1i06nfm824131q8lwwhrbzg2g9lbnmyp8k57w2vag7v8jj5rdrda"; depends=[]; };
   gfcanalysis = derive2 { name="gfcanalysis"; version="1.4"; sha256="1hjgbiakf01mmaa2jhlnymcsjsj1zssay44p4sdxxxzpx4szs3vv"; depends=[animation geosphere ggplot2 plyr raster rasterVis RCurl rgdal rgeos sp stringr]; };
   gfer = derive2 { name="gfer"; version="0.1.10"; sha256="1y0ra8k7zka43ibiii16vbwnc3m1i77yc9zj8rhzhmvhajjwad3l"; depends=[circlize data_table ggplot2 ggrepel googlesheets gsheet httr jsonlite rvest scatterpie stringi tidyr V8 xml2]; };
   gfmR = derive2 { name="gfmR"; version="1.1-0"; sha256="0qzzbcra1fnbp0h31b1as20yhmqmi7p62xrhikj64an9avg9b277"; depends=[faraway nnet]; };
   ggChernoff = derive2 { name="ggChernoff"; version="0.2.0"; sha256="09bh9isvx3hwwvg72fv6z3fvp8dimpbhvbp328z8amq8jjhph4vf"; depends=[ggplot2 scales]; };
   ggExtra = derive2 { name="ggExtra"; version="0.8"; sha256="1m5zpn3l3p1y3d2692gyz50m63d58m2a3b7zb595kvcffdx2qr5b"; depends=[colourpicker ggplot2 gtable miniUI scales shiny shinyjs]; };
-  ggFacetSample = derive2 { name="ggFacetSample"; version="1.0.0"; sha256="04h5j54wblrygiscvb6n40b9lz42ssds1yz9qs5hxppiph68k5zq"; depends=[ggplot2 plyr]; };
   ggQC = derive2 { name="ggQC"; version="0.0.2"; sha256="1wi9hb5ihix2vfpzbhpq2clbs7c0qh84qbmdfcxw4lknb0ha9ai1"; depends=[dplyr ggplot2 tidyr]; };
   ggQQunif = derive2 { name="ggQQunif"; version="0.1.5"; sha256="0vrxmqxy946mwdq0mb2m1ch41r0chrw7hcn18dr3mp10bv7pl7wj"; depends=[dplyr ggplot2 scales]; };
   ggROC = derive2 { name="ggROC"; version="1.0"; sha256="0p9gdy7ia59d5m84z9flz5b03ri7nbigb3fav2v2wrml300d24vn"; depends=[ggplot2]; };
   ggRandomForests = derive2 { name="ggRandomForests"; version="2.0.1"; sha256="0f8m0j79d8wbac14zk1s8812rz6vgf04bz1iqq8p4d3sxwnvaj7q"; depends=[ggplot2 randomForest randomForestSRC survival tidyr]; };
   ggThemeAssist = derive2 { name="ggThemeAssist"; version="0.1.5"; sha256="1biw91a8p13h62v4w3yim6ghr98khmyhb3qd0h04asf91vvmpxbv"; depends=[formatR ggplot2 miniUI rstudioapi shiny]; };
+  ggTimeSeries = derive2 { name="ggTimeSeries"; version="1.0.1"; sha256="12gi0zfl8g3x78skpkhska8b3z1pp636shrbx33rkq0iacsipqga"; depends=[data_table ggplot2]; };
   ggallin = derive2 { name="ggallin"; version="0.1.1"; sha256="0hrxa7m07ppvnndivxcgxksdyblb6fw17aw46maqavlvcrz3fjgm"; depends=[ggplot2 scales]; };
-  ggalluvial = derive2 { name="ggalluvial"; version="0.6.0"; sha256="1c7jigi5zph0slfk8z0has3irlm39xlpklzak6s04m2idwl7dcjz"; depends=[dplyr ggplot2 lazyeval rlang tidyr]; };
+  ggalluvial = derive2 { name="ggalluvial"; version="0.9.1"; sha256="0np4dwhxz9q3p9y1w45fyvs4cphi50mbgi9wrinpi3k5i3anv6zf"; depends=[dplyr ggplot2 lazyeval rlang tidyr tidyselect]; };
   ggalt = derive2 { name="ggalt"; version="0.4.0"; sha256="0ssa274d41vhd6crzjz7jqzbwgnjimxwxl23p2cx35aqs5wdfjpc"; depends=[ash dplyr extrafont ggplot2 gtable KernSmooth maps MASS plotly proj4 RColorBrewer scales tibble]; };
   ggbeeswarm = derive2 { name="ggbeeswarm"; version="0.6.0"; sha256="0crk29p5vi1r3a988kms4y7r0iqwgwzsikgvh18r9wbzyr98bb5v"; depends=[beeswarm ggplot2 vipor]; };
   ggbuildr = derive2 { name="ggbuildr"; version="0.1.0"; sha256="0pld635v6fv46ky7s4icwxlcnr7z6bp5ikf20adpkljwhy0wwxak"; depends=[ggplot2 purrr readr]; };
   ggconf = derive2 { name="ggconf"; version="0.1.3"; sha256="0g4xasqhdiqfqahakv6p5npl56f2iakx4bnc9v9zcjr077kdda4n"; depends=[ggplot2 rly]; };
-  ggcorrplot = derive2 { name="ggcorrplot"; version="0.1.1"; sha256="04jq1qpsgy8bgpilp1a02va4vz0adkjwrz9znmhv54q81qiv7h51"; depends=[ggplot2 reshape2]; };
+  ggcorrplot = derive2 { name="ggcorrplot"; version="0.1.2"; sha256="12sxvd9kjgszpbk35m7fj1wv7x40bp79c0g0by1xax70r3495h93"; depends=[ggplot2 reshape2]; };
   ggdag = derive2 { name="ggdag"; version="0.1.0"; sha256="0ja3v8pmlzl55n8y8n9zcg5n17w8w4vdq42bqf6h8hgyqj63rcg9"; depends=[dagitty dplyr forcats ggforce ggplot2 ggraph ggrepel igraph magrittr plyr purrr stringr tibble tidygraph]; };
   ggdendro = derive2 { name="ggdendro"; version="0.1-20"; sha256="1zzq1hxd0d1qa5hrzwfkdw6fzscpcafbwbpkrb62dm559y8awp0j"; depends=[ggplot2 MASS]; };
   ggdistribute = derive2 { name="ggdistribute"; version="1.0.2"; sha256="1cwm2fmpx5dvmg4jnydfp8d584dhhprb589p5ia9zf1fblc4jvvw"; depends=[data_table dplyr ggplot2 magrittr tibble]; };
-  ggdmc = derive2 { name="ggdmc"; version="0.1.3.9"; sha256="07a9g6kwq4hg5zlcxndwmyprl3di7fzsn2960qyixn5bzrfk7sh2"; depends=[coda ggmcmc ggplot2 ggthemes gridExtra loo Rcpp RcppArmadillo rtdists]; };
+  ggdmc = derive2 { name="ggdmc"; version="0.2.5.2"; sha256="0gswv1f1g24z34wza6fsnj1408yjvc2na1y3wnk2xi8ccqf6rj8g"; depends=[BH coda data_table ggmcmc ggplot2 matrixStats Rcpp RcppArmadillo rtdists tmvtnorm]; };
   gge = derive2 { name="gge"; version="1.4"; sha256="0plwk5j2n0309ghgn8r4ws3azwn7n4jb7yfykiiwwalhs3k05lsa"; depends=[nipals reshape2 rgl]; };
   ggedit = derive2 { name="ggedit"; version="0.3.0"; sha256="1v9apfkm47jcqyhjrvv8ig09gz6zsss5xj5mrckfjybd5ca08rzn"; depends=[colourpicker dplyr ggplot2 magrittr miniUI plyr purrr rlang rstudioapi scales shiny shinyAce shinyBS tidyr]; };
-  ggeffects = derive2 { name="ggeffects"; version="0.4.0"; sha256="0w2w0vwbpcwm9nqvsr2ksyary8ah6ar5gw233sbc8m3z3zx33qc1"; depends=[dplyr effects ggplot2 magrittr prediction purrr rlang scales sjlabelled sjmisc sjstats tibble tidyr tidyselect]; };
+  ggeffects = derive2 { name="ggeffects"; version="0.6.0"; sha256="00l02g7yssqxmcmbrzk2wsj3i9ywd0xsy0rmbfh57q1qi76a1wq1"; depends=[crayon dplyr ggplot2 lme4 magrittr MASS prediction purrr rlang scales sjlabelled sjmisc sjstats tidyr]; };
   ggenealogy = derive2 { name="ggenealogy"; version="0.3.0"; sha256="169zkcp13g0ll9941a7hh31fll0mavnkb6fd3kvkibdjm621ymyh"; depends=[ggplot2 igraph plotly plyr reshape2 tibble]; };
-  ggetho = derive2 { name="ggetho"; version="0.3.2"; sha256="1279y9mc4jvdpncy4xi80c2jbhkd1cv5k8hz5187dxq45ksan2bg"; depends=[behavr data_table ggplot2 labeling rlang scales stringr]; };
+  ggetho = derive2 { name="ggetho"; version="0.3.4"; sha256="05wh0qk5cbcvcfgj5wf12qqbjgl1bbwcxywc16qdby7r4h5wy0gn"; depends=[behavr data_table ggplot2 labeling rlang scales stringr]; };
   ggfan = derive2 { name="ggfan"; version="0.1.2"; sha256="0agk9r2g8gh5ixg25rix362c7hj8b255w3ff7iawinsndf0dmwpy"; depends=[colorspace dplyr ggplot2 rstan]; };
-  ggfittext = derive2 { name="ggfittext"; version="0.5.0"; sha256="0ih6mqg53y5iaiq003wbzp6qqx4844yh5z9zw5d0k7gqclprmpn5"; depends=[ggplot2 stringi]; };
+  ggfittext = derive2 { name="ggfittext"; version="0.6.0"; sha256="06zhzw7yw7i08pqb9an8gsbf7qmvf9la8s8k1zgril8jsqwf6sfl"; depends=[ggplot2 stringi]; };
   ggfocus = derive2 { name="ggfocus"; version="0.8"; sha256="1gzx9hiaxni7d90wb9apqzw4rxc32gk5nrjxkgvwv52m999jh2wc"; depends=[dplyr ggplot2 magrittr RColorBrewer rlang]; };
-  ggforce = derive2 { name="ggforce"; version="0.1.2"; sha256="1asz6mkgq47hp3c52dyqvzd8fyimid1by0jj263br0k0c572na9w"; depends=[dplyr ggplot2 gtable lazyeval MASS Rcpp scales tweenr units]; };
-  ggformula = derive2 { name="ggformula"; version="0.8.0"; sha256="0rfkg5viznb98rd2xkq8mg8qvmxc8xm0jmiwwjfa3x2ngivgvwnw"; depends=[dplyr ggplot2 magrittr mosaicCore rlang stringr tibble]; };
+  ggforce = derive2 { name="ggforce"; version="0.1.3"; sha256="0wydxmy6sfl84q94dd27m7cpg9iy6vgwzy3nr3m3cf3rfjk87sn4"; depends=[dplyr ggplot2 gtable lazyeval MASS Rcpp scales tweenr units]; };
+  ggformula = derive2 { name="ggformula"; version="0.9.0"; sha256="1pmpdfjfbrc6kcpq70cr1kbj2qy711hw940g2aiis6l443z706kh"; depends=[ggplot2 ggstance magrittr mosaicCore rlang stringr tibble tidyr]; };
   ggfortify = derive2 { name="ggfortify"; version="0.4.5"; sha256="1mqgikpg34czz0zj4q3yh4xq9iw2x9zkz00ss27r6pmi6zipb6rm"; depends=[dplyr ggplot2 gridExtra scales stringr tibble tidyr]; };
   gggenes = derive2 { name="gggenes"; version="0.3.1"; sha256="14a3j4cjv6b4na4j1wasm3cc566armgqc81s1yy756xc9k9sp4a9"; depends=[ggfittext ggplot2 rlang]; };
   ggghost = derive2 { name="ggghost"; version="0.2.1"; sha256="0kvsjadxxdf6yvzk4a6yqkg02q1ysslvf3m0a369bdim396z4hnv"; depends=[animation ggplot2]; };
@@ -6929,8 +7232,9 @@ in with self; {
   gghalfnorm = derive2 { name="gghalfnorm"; version="1.1.2"; sha256="1sy0m6pqmnjbqv60rljyblhis0dxwkhw751jhlad5arcgrcwf4k8"; depends=[ggplot2 ggrepel]; };
   gghighlight = derive2 { name="gghighlight"; version="0.1.0"; sha256="1mfjvfm5xbih7k7qz6x8akbqgh0b18dz9pybfgh7rbq2ppwnhpy9"; depends=[dplyr ggplot2 ggrepel magrittr purrr rlang tibble]; };
   ggimage = derive2 { name="ggimage"; version="0.1.7"; sha256="08xipid3n1ab2k2xs1ip3wgbdhw2ccsm49s62ygyqjp3z0cvbn2s"; depends=[ggplot2 ggplotify gridGraphics magick rvcheck scales tibble]; };
-  ggiraph = derive2 { name="ggiraph"; version="0.4.3"; sha256="0mjzx4jhfjr1mb19cgl70g5hfznnshbf08hvlg6hhbavlsk8fclp"; depends=[ggplot2 htmltools htmlwidgets rvg xml2]; };
-  ggiraphExtra = derive2 { name="ggiraphExtra"; version="0.1.0"; sha256="09fiwkaai4sy5kxy4p0c4ldb8ya63czff53hbm6d8fm858fw2byw"; depends=[ggiraph ggplot2 mapproj mgcv moonBook mycor plyr reshape2 scales XML]; };
+  gginnards = derive2 { name="gginnards"; version="0.0.1"; sha256="1yn5qfzih4caba8ilb1pkxzrrxcb0gia4kan7ch2yqdgi1jxqyhq"; depends=[ggplot2 magrittr rlang stringr tibble]; };
+  ggiraph = derive2 { name="ggiraph"; version="0.5.0"; sha256="0rwi2ch7jjgmf2lba40nd0mpfvwiqlx245hadsshn0km18rdn750"; depends=[ggplot2 htmltools htmlwidgets rvg xml2]; };
+  ggiraphExtra = derive2 { name="ggiraphExtra"; version="0.2.9"; sha256="1qmw7z10h1x6xnlpq7shafg6w2bal8ni02c07fyy9f7hm02xfnzs"; depends=[dplyr ggforce ggiraph ggplot2 magrittr mgcv mycor plyr ppcor purrr RColorBrewer reshape2 scales sjlabelled sjmisc stringr tidyr webshot ztable]; };
   ggjoy = derive2 { name="ggjoy"; version="0.4.1"; sha256="012md2m0jqfcccb933j423m3ck31v3p0pd41gjxpyg9082y7ixyj"; depends=[ggplot2 ggridges]; };
   gglasso = derive2 { name="gglasso"; version="1.4"; sha256="0r4zfgkys8104iw1vzww3qid8a6dyn03x0jlgwrdvavfj86yhq54"; depends=[]; };
   gglogo = derive2 { name="gglogo"; version="0.1.3"; sha256="1dq0bixz44p32kpma5wrqjqklal2ipjmqdwqap0xch542drlpqbn"; depends=[dplyr ggplot2 jpeg knitr magrittr plyr purrr reshape2]; };
@@ -6939,78 +7243,86 @@ in with self; {
   ggm = derive2 { name="ggm"; version="2.3"; sha256="1n4y459x2i0jil8chjjqqjs28a8pzfxrws2fcjkg3il7zy0zwbw3"; depends=[igraph]; };
   ggmap = derive2 { name="ggmap"; version="2.6.1"; sha256="0mssb09w818jv58h7mly9y181pzv22sgcd4a079cfpq04bs0wigw"; depends=[digest geosphere ggplot2 jpeg mapproj plyr png proto reshape2 RgoogleMaps rjson scales]; };
   ggmcmc = derive2 { name="ggmcmc"; version="1.1"; sha256="09b89cnmdmiwy18igzxjiq60l1xqjh022fw3rhd5kx7lnh02yza3"; depends=[dplyr GGally ggplot2 tidyr]; };
-  ggmosaic = derive2 { name="ggmosaic"; version="0.1.2"; sha256="1mxa09914j9i8b14brl70a7j7ngycj8wkil3sqkd4jwplaszvhsn"; depends=[dplyr ggplot2 gridExtra NHANES plotly productplots purrr tidyr]; };
+  ggmosaic = derive2 { name="ggmosaic"; version="0.2.0"; sha256="0byhp7125r015wbbnv6fq13bx38krf11r39jx9dzbr0ci6kqzkdb"; depends=[dplyr ggplot2 plotly productplots purrr rlang tidyr]; };
   ggmuller = derive2 { name="ggmuller"; version="0.5.1"; sha256="1wa4gcyzbwy1s200w57phahh6rwaf62qn3i400xywkf34fsi1il8"; depends=[ape dplyr ggplot2]; };
   ggnetwork = derive2 { name="ggnetwork"; version="0.5.1"; sha256="13qisn4msjzkpcmn7rh2c4ymqfxp9bayrvqngp9pysfmr6wvc6ia"; depends=[ggplot2 ggrepel network sna]; };
+  ggpage = derive2 { name="ggpage"; version="0.2.2"; sha256="0azf19dhc8zawm7hgsf866j3s028ybcfpmpmna86ly6z8d4j09xf"; depends=[dplyr ggplot2 magrittr purrr rlang stringr tidytext]; };
   ggparallel = derive2 { name="ggparallel"; version="0.2.0"; sha256="0zxaff0jbqkbavsmh1yyp3vdrxsam6a66hjw8lamv9pksdw1s2wf"; depends=[ggplot2 plyr reshape2]; };
-  ggplot2 = derive2 { name="ggplot2"; version="3.0.0"; sha256="0kb977hizsvk3b1k3zr717q78bpmbabhl8cj9a3w717nkq1zas67"; depends=[digest gtable lazyeval MASS mgcv plyr reshape2 rlang scales tibble viridisLite withr]; };
+  ggparliament = derive2 { name="ggparliament"; version="2.0.0"; sha256="04za4lm3lir95bgda1rzlsyil2fkac3j5f5f1pjw2samy6pjz80r"; depends=[dplyr ggplot2 rlang]; };
+  ggperiodic = derive2 { name="ggperiodic"; version="0.1.0"; sha256="0fk4nns2rffv9q3904xq81spv5160l2ddzrhs8s96h041fxwgd0z"; depends=[dplyr ggplot2 sticky tidyselect]; };
+  ggplot2 = derive2 { name="ggplot2"; version="3.1.0"; sha256="1msy36r21nlmnpyaw2m9k0ykmnd19b9il01b65w457pfw75prrs9"; depends=[digest gtable lazyeval MASS mgcv plyr reshape2 rlang scales tibble viridisLite withr]; };
   ggplot2movies = derive2 { name="ggplot2movies"; version="0.0.1"; sha256="067ld6djxcpbliv70r2c1pp4z50rvwmn1xbvxfcqdi9s3k9a2v8q"; depends=[]; };
   ggplotAssist = derive2 { name="ggplotAssist"; version="0.1.3"; sha256="1g0s1dkbrxmwqjqppagdbnx24s0nbjn09xwxix3dkfssz6drhala"; depends=[dplyr editData gcookbook ggplot2 ggthemes magrittr miniUI moonBook rstudioapi scales shiny shinyAce shinyWidgets stringr tibble tidyverse]; };
   ggplotgui = derive2 { name="ggplotgui"; version="1.0.0"; sha256="1yfglg5438mwyml845isimzma5q6824x19jka509ng49bzmf1za0"; depends=[ggplot2 haven plotly RColorBrewer readr readxl shiny stringr]; };
-  ggplotify = derive2 { name="ggplotify"; version="0.0.2"; sha256="00qkm0jlhxgihncrygmkahqq0dm6kiyfw00iyrfw0khrd4khpahb"; depends=[ggplot2 gridGraphics rvcheck]; };
-  ggpmisc = derive2 { name="ggpmisc"; version="0.2.17"; sha256="1lx5a0n00994pp16jgz4c5xxsj8px6l9wl0cdsr0dr1d43lqywq1"; depends=[broom devtools dplyr ggplot2 gridExtra lubridate magrittr MASS plyr polynom rlang splus2R tibble xts zoo]; };
-  ggpol = derive2 { name="ggpol"; version="0.0.2"; sha256="0viq6k5xswhb7dzzjwr59kc7lw6312x015lbx64y3vx71ncbrgkz"; depends=[dplyr ggplot2 gtable plyr rlang]; };
+  ggplotify = derive2 { name="ggplotify"; version="0.0.3"; sha256="14hqlpvnaq5psz1ljcpw9isa06827rg3fm5c1dx159rsjfi56yby"; depends=[ggplot2 gridGraphics rvcheck]; };
+  ggpmisc = derive2 { name="ggpmisc"; version="0.3.0"; sha256="1mmqz3qb9j77rlxlcrki21l0s4qr2h10bk810a40jxadiv2lqbcz"; depends=[broom dplyr ggplot2 gridExtra lubridate magrittr MASS plyr polynom rlang splus2R tibble xts zoo]; };
+  ggpol = derive2 { name="ggpol"; version="0.0.4"; sha256="163rhms5hclp3hp2vwamvkmngv81rgg6w4l4hw10jrv5pcs3ybyy"; depends=[dplyr ggplot2 gtable plyr rlang]; };
   ggpolypath = derive2 { name="ggpolypath"; version="0.1.0"; sha256="0g9zfal3vqcx16fi4abxm6l5sam475lk1f6bdik487wc2v0dkq83"; depends=[ggplot2]; };
-  ggpubr = derive2 { name="ggpubr"; version="0.1.7"; sha256="110ny8p41kmbz0a5rl0mv9cqpjkx6yr3ybflp1r0fmcvhwv7cr3i"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif gridExtra magrittr purrr scales tidyr]; };
-  ggpval = derive2 { name="ggpval"; version="0.2.0"; sha256="1nwf3cz1258khp1barxxp28326bagvlsfhg4rcccbxcpny9vbl7d"; depends=[data_table ggplot2]; };
-  ggquickeda = derive2 { name="ggquickeda"; version="0.1.0"; sha256="00j6gpika8x2yplnirj06vrc55aljcdhd2ln7081kym8xsfrjd2h"; depends=[colourpicker dplyr DT Formula ggplot2 ggrepel gridExtra Hmisc lazyeval markdown plotly quantreg rlang scales shiny shinyjs stringr survival tidyr]; };
+  ggpubr = derive2 { name="ggpubr"; version="0.1.8"; sha256="0psl2zndm4wk6nnj1nv305islpxfvfgd87gjh2ph8yqn4mxpnfi1"; depends=[cowplot dplyr ggplot2 ggrepel ggsci ggsignif glue gridExtra magrittr polynom purrr scales tidyr]; };
+  ggpval = derive2 { name="ggpval"; version="0.2.1"; sha256="1akhndl08nq97nvz2gzblfqsrjpxx1m632f3469mab9z1jcvaz57"; depends=[data_table ggplot2]; };
+  ggquickeda = derive2 { name="ggquickeda"; version="0.1.1"; sha256="06jj9z6hd1v21r4bxsl3lshqabcc3sfqaj731j9pimrs63z0vsf8"; depends=[colourpicker dplyr DT Formula ggplot2 ggpmisc ggrepel gridExtra Hmisc lazyeval markdown plotly quantreg rlang scales shiny shinyjs stringr survival table1 tidyr]; };
   ggquiver = derive2 { name="ggquiver"; version="0.1.0"; sha256="0p6li7cxjy54qrmaf9ja6aknnlxwq4sl0z1yip1mznb5rhv6lpxw"; depends=[dplyr ggplot2]; };
-  ggraph = derive2 { name="ggraph"; version="1.0.1"; sha256="0sm1hf2fjfia0s8m5b1x6pi8wvww77rpck86clpa2figwvck8jqr"; depends=[digest dplyr ggforce ggplot2 ggrepel gtable igraph MASS plyr Rcpp scales viridis]; };
+  ggraph = derive2 { name="ggraph"; version="1.0.2"; sha256="0fpmp326mryd1k1qvacjadksrnhbla8h960i18lmrimzrag7692c"; depends=[digest dplyr ggforce ggplot2 ggrepel gtable igraph MASS plyr Rcpp scales viridis]; };
   ggraptR = derive2 { name="ggraptR"; version="1.1"; sha256="1lknd3vibysc00c6b59c0yq2r3dda7zn8bj7gxjzjv90jwpgl0b8"; depends=[dplyr ggplot2 pacman purrr shiny]; };
   ggrasp = derive2 { name="ggrasp"; version="1.0"; sha256="0lini89mcxl30kx38vny9896hdf4afrz5dgivbbikkb2yyfh2cq1"; depends=[ape bgmm colorspace ggplot2 mixtools]; };
   ggrepel = derive2 { name="ggrepel"; version="0.8.0"; sha256="1m3p84d6nh9mzzvxb82vgig3ngcvkz86rjwzl9a66ckdf5p611k3"; depends=[ggplot2 Rcpp scales]; };
-  ggridges = derive2 { name="ggridges"; version="0.5.0"; sha256="1znvsbl3px8dddpjgdrygnpz4s685wizi0jnjvx2hrz58i0chjqj"; depends=[ggplot2 plyr scales withr]; };
+  ggridges = derive2 { name="ggridges"; version="0.5.1"; sha256="0dhwcpy785ac2ny5bjp284595nnybi3554wd0yffsli0vzf7ry01"; depends=[ggplot2 plyr scales withr]; };
   ggsci = derive2 { name="ggsci"; version="2.9"; sha256="0g73x6grbka7ahjh6z23m3wrcifp5rdfdiasbl8lq4sp6rplxwaa"; depends=[ggplot2 scales]; };
   ggseas = derive2 { name="ggseas"; version="0.5.4"; sha256="1jpdijwll5l7bg7cmjnklkxffysi9ckzg50rw2a2cd00zwby11q9"; depends=[ggplot2 rlang seasonal zoo]; };
   ggseqlogo = derive2 { name="ggseqlogo"; version="0.1"; sha256="13q6kcpxrqxqbji889fx63p0nsi08lk5yymkchig75r5k1d18ky1"; depends=[ggplot2]; };
   ggsignif = derive2 { name="ggsignif"; version="0.4.0"; sha256="1rn58d7pb3axk6chiihryykrzw76adaa2yiafq4d0j6qbhax78f7"; depends=[ggplot2]; };
   ggsn = derive2 { name="ggsn"; version="0.4.0"; sha256="0si3llqlb0dg482cqxhv5lm6raawqwpcd5ymjicw3780xq7d7mrk"; depends=[ggplot2 maptools png]; };
-  ggspatial = derive2 { name="ggspatial"; version="0.2.1"; sha256="11vminz4kwv1ny4v9h23sp7j7d45q6v4804xv9fp04qgzbzi9lv8"; depends=[abind ggplot2 maptools plyr raster reshape2 rgdal rosm scales sp]; };
-  ggspectra = derive2 { name="ggspectra"; version="0.2.4-1"; sha256="0jp1zfzsnpnvcyw4m7cn4d871pqsniyrhv3j5riir6fa4ll4nmcb"; depends=[dplyr ggplot2 ggrepel lubridate photobiology photobiologyWavebands scales tidyr]; };
-  ggstance = derive2 { name="ggstance"; version="0.3"; sha256="0sr84nasr8x8ib3mdsjck73gbfg9xba50s5nxdij0ah9xqnpyhpi"; depends=[ggplot2 lazyeval plyr purrr]; };
-  ggstatsplot = derive2 { name="ggstatsplot"; version="0.0.4"; sha256="19rr5cq9s9w4ivdr42ia0vqf62vsq0l1d3f3icp0zy0r9jzsdfwp"; depends=[apaTables boot broom coin cowplot crayon dplyr effsize ggcorrplot ggExtra ggplot2 ggrepel glue gtable jmv lmerTest magrittr MBESS purrr purrrlyr rlang scales sjstats tibble tidyr WRS2]; };
+  ggsolvencyii = derive2 { name="ggsolvencyii"; version="0.1.0"; sha256="0qg2qlgnbndrjsri0n628niin2m4g7mhz59szr1cid88kakj33n9"; depends=[dplyr ggplot2 magrittr tidyr]; };
+  ggsom = derive2 { name="ggsom"; version="0.2.1"; sha256="0gycd3yzdy58m22r62my5v0s00mr7ga7mcfa6i300arp47lzdwq1"; depends=[dplyr ggplot2 ggthemes kohonen tidyr tidyverse]; };
+  ggspatial = derive2 { name="ggspatial"; version="1.0.2"; sha256="0j22s3icqxd1qv38cbznnrdfsprma9mbakfb49hfqbf9m22f2lkn"; depends=[abind ggplot2 plyr raster reshape2 rosm scales sf tibble tidyr]; };
+  ggspectra = derive2 { name="ggspectra"; version="0.3.0"; sha256="1kqi555s4hib3npv09xlfbfa1kpp91p09sri5wx8ccc06l8ya9dz"; depends=[dplyr ggplot2 ggrepel lubridate photobiology photobiologyWavebands scales tidyr]; };
+  ggstance = derive2 { name="ggstance"; version="0.3.1"; sha256="0v7f3xdaaridw6d4jvnsfwxmpjrasvx5vl555wsrn50aah17fkvh"; depends=[ggplot2 plyr rlang withr]; };
+  ggstatsplot = derive2 { name="ggstatsplot"; version="0.0.6"; sha256="0qnsy3a4laph9a5yb1lx5a2fbyxa3swv9x20ailnwanpwc09f71l"; depends=[boot broom broom_mixed coin cowplot crayon dplyr effsize exact2x2 ggcorrplot ggExtra ggplot2 ggrepel glue jmv magrittr paletteer psych purrr purrrlyr rlang scales sjstats tibble tidyr WRS2]; };
   ggswissmaps = derive2 { name="ggswissmaps"; version="0.1.1"; sha256="0is48x6k2p5dgj9q4km0dv33a9pcpfhlai9vz295y3acpyrkmnn4"; depends=[ggplot2]; };
-  ggtern = derive2 { name="ggtern"; version="2.2.1"; sha256="05dszysn1qr5s4ji4il91pv19xjh5yd09w9f153fmg4cyfl716iz"; depends=[compositions ggplot2 gridExtra gtable latex2exp lattice MASS plyr proto scales]; };
-  ggthemes = derive2 { name="ggthemes"; version="3.5.0"; sha256="0drbzzb4i5jq1579fx1wmgh87ybnswjn7srak2l8g771ip49xwb8"; depends=[assertthat colorspace ggplot2 scales]; };
+  ggtern = derive2 { name="ggtern"; version="3.0.0"; sha256="1qfgxid4bpzfmjz4jg9rg2sc12xzymadi06ryf4kwb06z4krd1k3"; depends=[compositions ggplot2 gridExtra gtable latex2exp lattice MASS plyr proto scales]; };
+  ggthemes = derive2 { name="ggthemes"; version="4.0.1"; sha256="0y6570wv135sf7pv57l7bqilzw47rziaqx4vsk45pf1w4lmj0w8b"; depends=[ggplot2 purrr scales stringr tibble]; };
   ggversa = derive2 { name="ggversa"; version="0.0.1"; sha256="0xqn8iznrm8q30pxwka88wi1z7lndi6lm12rq6ngcaxf294fbz01"; depends=[]; };
-  ggvis = derive2 { name="ggvis"; version="0.4.3"; sha256="1p7c8f83da30grj5n0v80p5djp6z0r62z5zqpv2a3ahn61w1gm9l"; depends=[assertthat dplyr htmltools jsonlite lazyeval magrittr shiny]; };
+  ggvis = derive2 { name="ggvis"; version="0.4.4"; sha256="1bxggjr2313kfy895j0fvrv4bg7yh2z87907lk48i1kn5c9flchk"; depends=[assertthat dplyr htmltools jsonlite lazyeval magrittr shiny]; };
+  ggvoronoi = derive2 { name="ggvoronoi"; version="0.8.1"; sha256="1258y0w5jn2jg3gf7pvar1im8vlmifjj28z5syl9iyqa2hvlnrw8"; depends=[deldir ggplot2 raster rgeos sp]; };
+  ggwordcloud = derive2 { name="ggwordcloud"; version="0.3.0"; sha256="0bndv4vfan0cx2lpa0qhkfaz4dmp6rda1mgc3vz0vhkg9v3x96k6"; depends=[Cairo colorspace ggplot2 png Rcpp scales]; };
   gh = derive2 { name="gh"; version="1.0.1"; sha256="1llinfajb0g7006jd2w1hpskxpmkjhnqarcjb71r1qvsccb2ph7k"; depends=[httr ini jsonlite]; };
-  ghibli = derive2 { name="ghibli"; version="0.1.1"; sha256="1jnl017hkzhiic0fndprs68xx3njlijxkaqj9d65xazcwynaq436"; depends=[ggplot2]; };
+  ghibli = derive2 { name="ghibli"; version="0.1.2"; sha256="1cp1kdfya11qrm5wy1mr9a98dwkkw3ssjzj2ycgna0rrsml6cawk"; depends=[ggplot2]; };
   ghyp = derive2 { name="ghyp"; version="1.5.7"; sha256="195hsskh2ykafqr93f675xqsmhbrki3abi61hk78bzy09n1d4jfk"; depends=[gplots numDeriv]; };
-  giRaph = derive2 { name="giRaph"; version="0.1.2"; sha256="137c39fz4vz37lpws3nqhrsf4qsyf2l0mr1ml3rq49zz4146i0rz"; depends=[]; };
   gibble = derive2 { name="gibble"; version="0.0.2"; sha256="0a9h3q0kwk9aagcpnmih59vbm5n7hdjpa4idwagky351almblmr6"; depends=[dplyr tibble]; };
   gibbs_met = derive2 { name="gibbs.met"; version="1.1-3"; sha256="1yb5n8rkphsnxqn8rv8i54pgycv9p7x1xhinx4l5wzrds3xhf2dc"; depends=[]; };
+  gifski = derive2 { name="gifski"; version="0.8.6"; sha256="00w4bzp0rrp4isy1rnxs6g1q07r3wndadk3mqdrxk2wxi7jmghna"; depends=[]; };
   gifti = derive2 { name="gifti"; version="0.7.5"; sha256="1y64bc33b5f64a4khp916s9zb7kbb24xgdg3pdlh0f8m6zrbmp4a"; depends=[base64enc R_utils xml2]; };
   gim = derive2 { name="gim"; version="0.11.0"; sha256="1psmziq03k1nbdl64sy152ih4g625qkbp5l7msfibrcbpgz0hg7y"; depends=[numDeriv]; };
-  gimme = derive2 { name="gimme"; version="0.4-1"; sha256="1b1f92v54r9aqbwia549abjiw712ps4s58yw2n9p9894m4ijc88v"; depends=[igraph lavaan qgraph]; };
+  gimme = derive2 { name="gimme"; version="0.4-2"; sha256="0vr9f0c2gxchxivxwhcqp2q5fs5a6j2w9lp0p0qrqha8b5gyqj8h"; depends=[igraph lavaan qgraph]; };
   gimmeTools = derive2 { name="gimmeTools"; version="0.1"; sha256="1g170rz3c3qx27yy67f7xab4gkm0pbbvwlwkcsczfxphad609ryl"; depends=[easycsv magrittr miniUI rhandsontable rintrojs rstudioapi shiny shinyjs shinyWidgets]; };
   gimms = derive2 { name="gimms"; version="1.1.0"; sha256="0mqffqvaapb0m0d50vg4kvdp67yq99qf54f5anwq4md0rf3x8lid"; depends=[curl Kendall ncdf4 raster RCurl zyp]; };
   giphyr = derive2 { name="giphyr"; version="0.1.2"; sha256="1id3r291xyj1ylxgmw2cbazaz0jq4bksj8bijwagcawimfxibz45"; depends=[dplyr httr miniUI purrr rstudioapi shiny tibble]; };
   gistr = derive2 { name="gistr"; version="0.4.2"; sha256="0bh325pf37v307isdlvdglripfki8xr6gh7n8mgi4cjparzhrh23"; depends=[assertthat dplyr httr jsonlite knitr magrittr rmarkdown]; };
-  git2r = derive2 { name="git2r"; version="0.21.0"; sha256="11xgddmxzh9cy85k8fb90il43qswpvryz0h9r0j1gbclfg2f9004"; depends=[]; };
+  git2r = derive2 { name="git2r"; version="0.23.0"; sha256="01250jz255fnyy2ap90nskvzhd8nhlmbhwgpvb43mk1fax077lrz"; depends=[]; };
   gitgadget = derive2 { name="gitgadget"; version="0.2.1"; sha256="02jmp5lnk156sfqlv91jn42xds98ihya1x2f97cfwpzlas5qrxky"; depends=[curl dplyr jsonlite miniUI rstudioapi shiny]; };
   githubinstall = derive2 { name="githubinstall"; version="0.2.2"; sha256="0hqh86r2007hzdbm8rr0fwqhhsna7ji8sdgmdnrxkxraa5f2pfz3"; depends=[curl data_table devtools httr jsonlite mockery]; };
   gitlabr = derive2 { name="gitlabr"; version="0.9"; sha256="0i9sqqvn9xzknybsj9nmi6kclw8c35shy658li17455d28gv4653"; depends=[base64enc dplyr httr magrittr purrr stringr tibble yaml]; };
   gitter = derive2 { name="gitter"; version="1.1.1"; sha256="10m4rs6mhg7xn8dfd41ai0bnn5bnxn6cgqip22hrrpj0i2lzky6l"; depends=[EBImage ggplot2 jpeg logging PET tiff]; };
   givitiR = derive2 { name="givitiR"; version="1.3"; sha256="0y2slhxhj7k413kjaydin9hq3x2xgx4cgjshdplwnmg3x2nakn31"; depends=[alabama rootSolve]; };
-  gjam = derive2 { name="gjam"; version="2.2.4"; sha256="16gfb199mhpg0yp7xy9x8nlpcfmhkks92fwfa1ryv6plkzn6rhkl"; depends=[MASS RANN Rcpp RcppArmadillo]; };
+  gjam = derive2 { name="gjam"; version="2.2.6"; sha256="16csy2vr4ly09f5nqwad1ik1nj0yhmxs1jj1rjqdi2ramh4jlwlx"; depends=[MASS RANN Rcpp RcppArmadillo]; };
   gk = derive2 { name="gk"; version="0.5.1"; sha256="1hgxb1lp78pbnj22i7ryf46im301j05y7hh75z2fxvv5nqgg2v75"; depends=[Ecdat lubridate progress]; };
   gkmSVM = derive2 { name="gkmSVM"; version="0.79.0"; sha256="04dakbgfvfalz4rm4fvvybp506dn5fbj5g86ybfhrc6wywjllsz3"; depends=[BiocGenerics Biostrings GenomeInfoDb GenomicRanges IRanges kernlab Rcpp ROCR rtracklayer S4Vectors seqinr]; };
   glacierSMBM = derive2 { name="glacierSMBM"; version="0.1"; sha256="0117fzz2b1lccs0kkwz59w2yysi72j54yvz7373pz11w7rjds84f"; depends=[raster sp udunits2]; };
   glamlasso = derive2 { name="glamlasso"; version="3.0"; sha256="1ynhl868kh25l8m04ln6ix31z9r26lrbr5ajprpq9yfhqs4l9ddc"; depends=[Rcpp RcppArmadillo]; };
   glarma = derive2 { name="glarma"; version="1.6-0"; sha256="0n0mv4xvh5q3y383cs224x6r608ciw4822pkanvmcjsc9zl0z1ar"; depends=[MASS]; };
   glassdoor = derive2 { name="glassdoor"; version="0.7.6"; sha256="0zgkz32vp71fyy25lx4kaa5gj5aj7glhxa0yqnawl1j1a4klj3v3"; depends=[httr xml2]; };
-  glasso = derive2 { name="glasso"; version="1.8"; sha256="0gcapw7kyxb19wvdyxq1vsmc5j7yyd0rvqxs2i71k31q352sg6zw"; depends=[]; };
+  glasso = derive2 { name="glasso"; version="1.10"; sha256="0nshpx14v2yny7lr8ll6nnz71n0f02sddh2c2dglfprbk89p9yp6"; depends=[]; };
+  glassoFast = derive2 { name="glassoFast"; version="1.0"; sha256="1sgmh4l06q7mrmgnimphpqgix4k4jzaj2l30kpmnf92caa2v7ngw"; depends=[]; };
   glba = derive2 { name="glba"; version="0.2"; sha256="0ckcz6v6mfbv34s8sp086czhb5l58sky79k84332rrz6wj47p3md"; depends=[]; };
   glcm = derive2 { name="glcm"; version="1.6.1"; sha256="0xzfhafc7326v3g1xngp584039iknw3q3bcx8f0j4ig125in7sxk"; depends=[Rcpp RcppArmadillo]; };
   gld = derive2 { name="gld"; version="2.4.1"; sha256="0ycm3w8s5bm5w2lqy0qa877cwjcwc9x1zyyyrknwwjjxip250iaw"; depends=[e1071 lmom]; };
   gldrm = derive2 { name="gldrm"; version="1.5"; sha256="1mbdxqjw6sa47kigwrjq1gn6vi36zhg9j2lck144iwa10ms0y9xp"; depends=[]; };
   glinternet = derive2 { name="glinternet"; version="1.0.8"; sha256="06ak80j01cbrr6s8hmcc734z476rrqzib0xqjgv7c3jbw0api71y"; depends=[]; };
   gllm = derive2 { name="gllm"; version="0.35"; sha256="1m9asamh2yha9q8mrllvvc9qj2im6cspvfpafzc8krmh17zq4ins"; depends=[]; };
-  gllvm = derive2 { name="gllvm"; version="0.1.0"; sha256="13ca5ms6bbrj3ny5n438v5ma0d7ccnghysz7c8452cpdq8sn87iy"; depends=[fishMod MASS Matrix mvabund mvtnorm Rcpp RcppEigen statmod TMB]; };
+  gllvm = derive2 { name="gllvm"; version="1.0"; sha256="1bhxwv4nggl2pbbr3c53j8jk02l4kwzkdhg4wmv9xlpd3mc2qb07"; depends=[fishMod MASS Matrix mvabund mvtnorm RcppEigen statmod TMB]; };
   glm_deploy = derive2 { name="glm.deploy"; version="1.0.4"; sha256="1akklvbhz2pp0sv1hax1jq0s9ajbfv1597z643gh5l9hwizj2h9m"; depends=[Rcpp]; };
   glm_predict = derive2 { name="glm.predict"; version="3.0-1"; sha256="0miba0xha99rmriqs7ifriq86ykn04j04f3ywk29bpph4iwc5faq"; depends=[MASS nnet]; };
-  glm2 = derive2 { name="glm2"; version="1.2"; sha256="09bjqz7zih644hba27illlmzfcs94q5h4fdplg948adi1z790las"; depends=[]; };
+  glm2 = derive2 { name="glm2"; version="1.2.1"; sha256="1byqlvpls23gzy7xlbs1kgfr4bsrmsrpc8rzzacf9czap1nlw39y"; depends=[]; };
   glmBfp = derive2 { name="glmBfp"; version="0.0-51"; sha256="15jm450j1f0nl7vqvpb2mwapdlvn7kq2kxf5s96x21siwsz7sssv"; depends=[coda Rcpp RcppArmadillo rms Runuran statmod survival]; };
   glmbb = derive2 { name="glmbb"; version="0.3"; sha256="12yabwswps0fmprh8nb9jdny9xrm13jvc0d9m3w04ppmsvalrmwl"; depends=[digest]; };
   glmc = derive2 { name="glmc"; version="0.2-4"; sha256="03m1ym9w0b0gqib13pnh1yrjijlcwsn5lijg0nsr4hd6gxw29cla"; depends=[emplik]; };
@@ -7024,7 +7336,7 @@ in with self; {
   glmmLasso = derive2 { name="glmmLasso"; version="1.5.1"; sha256="1az9vdnyqyrfn1q7zrn6x4ywx77b0vg65cni45x37b0ybkwpis39"; depends=[Matrix minqa]; };
   glmmML = derive2 { name="glmmML"; version="1.0.3"; sha256="1svawi74rfir9czqyf194wmh4fw053n81j7prnanyfskrchkd94k"; depends=[]; };
   glmmTMB = derive2 { name="glmmTMB"; version="0.2.2.0"; sha256="1clpkjlmsjmn3m1z5jqv8cgw6bvpqsy4nx6k947r0jya017ny5y5"; depends=[lme4 Matrix nlme RcppEigen TMB]; };
-  glmmboot = derive2 { name="glmmboot"; version="0.1.2"; sha256="0c7in0sq7q1dfgk316j0aizycn8mdpjknf1yfp3d670g3275sx87"; depends=[]; };
+  glmmboot = derive2 { name="glmmboot"; version="0.2.0"; sha256="1gc04pgii1i7804mmcwgni3w0j1i9cwr7rmdm4rixnx2kxrdq9h3"; depends=[]; };
   glmmfields = derive2 { name="glmmfields"; version="0.1.0"; sha256="1b7p1srwavpqm2468n4sxhbm988pxz7zvj76h86fig1jdqf9hlix"; depends=[assertthat BH broom cluster dplyr forcats ggplot2 loo mvtnorm nlme Rcpp RcppEigen reshape2 rstan rstanarm StanHeaders]; };
   glmmsr = derive2 { name="glmmsr"; version="0.2.2"; sha256="05psf6yjsp3zgh7lfdh2pk1zycp7rgdk61ccm7059f60dzg182b9"; depends=[BH lme4 Matrix numDeriv R6 Rcpp RcppEigen]; };
   glmnet = derive2 { name="glmnet"; version="2.0-16"; sha256="1brr51z1fzbpyj6myyir4g6dhbp6xwl7nx4xnvrjarnf5y0csk55"; depends=[foreach Matrix]; };
@@ -7039,24 +7351,27 @@ in with self; {
   globalGSA = derive2 { name="globalGSA"; version="1.0"; sha256="1f3xv03m6g2p725ff0xjhvn2xcfm7r7flyrba080i4ldy6fd8jg8"; depends=[]; };
   globalOptTests = derive2 { name="globalOptTests"; version="1.1"; sha256="0yf4p82dpjh36ddpfrby7m3fnj2blf5s76lncflch917sq251h4f"; depends=[]; };
   globalboosttest = derive2 { name="globalboosttest"; version="1.1-0"; sha256="1k7kgnday27sn6s1agzlj94asww81655d2zprx6qg7liv677bxvf"; depends=[mboost survival]; };
-  globals = derive2 { name="globals"; version="0.12.1"; sha256="1yfgxnvrd0xnl5ir5835lna3a1zwy0s2apibi270mj5sflrlfwia"; depends=[codetools]; };
+  globals = derive2 { name="globals"; version="0.12.4"; sha256="0szyv1ayyk31bh3xqlkj43020w44xq6s4rw2bxwizyjssxm3b1br"; depends=[codetools]; };
   globe = derive2 { name="globe"; version="1.2-0"; sha256="0xa0q5dac0g7xdlr679f3km8nqxlm7gi4msp9fbfivfvy0rmri96"; depends=[]; };
   glogis = derive2 { name="glogis"; version="1.0-1"; sha256="1sbvcg5slvd2c7fasvbj534x36rh11zq3mxv5z0jwpqd6h1xadmd"; depends=[sandwich zoo]; };
-  glpkAPI = derive2 { name="glpkAPI"; version="1.3.0"; sha256="0173wljx13jali2jxz4k5za89hc64n2j9djz5bcryrqhq4rmkp87"; depends=[]; };
+  glpkAPI = derive2 { name="glpkAPI"; version="1.3.1"; sha256="06p8zvmshymcw994mmf1ar00kfj645z8dp18yy4i5bl6qydbpb8k"; depends=[]; };
   glrt = derive2 { name="glrt"; version="2.0"; sha256="0p2b0digndvnn396ynv56cdg436n3ll7pxkb81rs3dhwbyqyc948"; depends=[survival]; };
-  glue = derive2 { name="glue"; version="1.2.0"; sha256="0vi9y8ix95g6hjqdz9c9y4119apbdjcypdv0ag8cl6vaxqs5n9qr"; depends=[]; };
+  glue = derive2 { name="glue"; version="1.3.0"; sha256="1vhw5497lpfr4m8lcx9bs0fgdp4ax0sycrk6n8yksp33qd25m7kq"; depends=[]; };
+  glycanr = derive2 { name="glycanr"; version="0.3.1"; sha256="1wygy5r5rdkcxrraqkqs2kd0nj8x2whm6k556pyd1sa4ra8xgvjp"; depends=[coin dplyr ggplot2 tidyr]; };
   gmDatabase = derive2 { name="gmDatabase"; version="0.5.0"; sha256="0prap4a8pvylmvakd2ii87jz9bqf0vvfsxdi4iwa40nx444hqhx2"; depends=[DBI digest foreach RMySQL shiny]; };
   gma = derive2 { name="gma"; version="1.0"; sha256="08hxbs9z4vq5zjis0lgdcvlysaj1k7i0icdk3wsyqf3wd9znsibi"; depends=[car MASS nlme]; };
   gmailr = derive2 { name="gmailr"; version="0.7.1"; sha256="1gniwwl0ci0wm7a3ai2lqrr590smmkdgyf3aarw6bdygn8hr3s3y"; depends=[base64enc crayon httr jsonlite magrittr mime]; };
-  gmapsdistance = derive2 { name="gmapsdistance"; version="3.3"; sha256="09vgrfv5dj0myys0rl767wn0xx1yvmm176c48812ysj2kj3fa29v"; depends=[RCurl XML]; };
+  gmapsdistance = derive2 { name="gmapsdistance"; version="3.4"; sha256="1hazf6xb4ja6h2lrl63kbd78wzny9sljiid9rq1r3szn3l1mc7dn"; depends=[RCurl XML]; };
+  gmat = derive2 { name="gmat"; version="0.1.0"; sha256="1fpkx91fwr6cj6jn9a4lsj5f3nhvg8lyxandqbv9z5imb73d1gci"; depends=[igraph]; };
   gmediation = derive2 { name="gmediation"; version="0.1.1"; sha256="0md4h298vqw67qrjcaia6xz8s7akdpcmxa83irm12qgbh56a5rpr"; depends=[MASS plyr VGAM]; };
   gmeta = derive2 { name="gmeta"; version="2.3-0"; sha256="1izfz6gkisa8rskhfka6q73rcgzwdsmkdhy79jwcaqk25jrwfk60"; depends=[BiasedUrn binom]; };
   gmfd = derive2 { name="gmfd"; version="1.0.1"; sha256="03sag09x7pjyzsp6w1z06108ig068krmw75064cnl3pqfvfyjfgr"; depends=[]; };
   gmm = derive2 { name="gmm"; version="1.6-2"; sha256="0pbimp4g5hpi949m6dpwwds3a9dv2m4iwwg2gbqq1m62fs18hbxi"; depends=[sandwich]; };
   gmnl = derive2 { name="gmnl"; version="1.1-3"; sha256="05p2kikv8zz9ldc6xi5bz7fyinpd0sp2v82hxhx6h54hfa6i7b9v"; depends=[Formula maxLik mlogit msm plotrix truncnorm]; };
   gmodels = derive2 { name="gmodels"; version="2.18.1"; sha256="0s8kd8krqk4kwv2zqxpsfy3w8qdwf5naf4b5l383vidq9sil0qb2"; depends=[gdata MASS]; };
-  gmp = derive2 { name="gmp"; version="0.5-13.1"; sha256="0xh9dli4i7hyjywsn2h780cxl3k7v0q421djyr1wshk7l9s5701g"; depends=[]; };
+  gmp = derive2 { name="gmp"; version="0.5-13.2"; sha256="1xd6jjra4niqv1kps91y348lwgvy73p2faxaia4gfzdnrpw7wsxf"; depends=[]; };
   gmt = derive2 { name="gmt"; version="2.0-1"; sha256="1g1sj9gq3h3s0pdcfvzg7iifkns5azn3pa83if0d3yzc28cjf0yz"; depends=[]; };
+  gmvarkit = derive2 { name="gmvarkit"; version="1.0.3"; sha256="1497n11a7m5mbb8d3hcr89yhfh64vqsxi2w6kvlrxmmx95q2cp70"; depends=[Brobdingnag mvnfast pbapply]; };
   gnFit = derive2 { name="gnFit"; version="0.2.0"; sha256="0cji4zjslh18dfj0l827r6br4hx2f0akiaxrg7fhhyyyhgdcjnsm"; depends=[ismev rmutil]; };
   gnlm = derive2 { name="gnlm"; version="1.1.0"; sha256="0fv89cvbnp9n3lgg6y4sqmz9jzcgwj7vd92rwg7hixwrjyqpan4z"; depends=[rmutil]; };
   gnm = derive2 { name="gnm"; version="1.1-0"; sha256="01d7wxsh4d9w4jh8vn62sjzgpll650yl3klfhlaa8j0qwpxr2fml"; depends=[MASS Matrix nnet qvcalc relimp]; };
@@ -7066,7 +7381,7 @@ in with self; {
   goalprog = derive2 { name="goalprog"; version="1.0-2"; sha256="1h3nd3d53hbz5hl3494lpfjnp1ddklc17nhgw18362jd1nk14awy"; depends=[lpSolve]; };
   goeveg = derive2 { name="goeveg"; version="0.3.3"; sha256="1p66fc1vr09zxp1h81b8by2cldxn0q8vivcc5g3pggb65d9wj846"; depends=[fields mgcv vegan]; };
   gof = derive2 { name="gof"; version="0.9.1"; sha256="1s12gga9d6yizn2y7lzql4jd80lp5jpyml8ybn7xqswp8am82vpg"; depends=[]; };
-  gofCopula = derive2 { name="gofCopula"; version="0.2-3"; sha256="1xigbv9mc0c1j3qc0nay0fjwmqvw91cy3x1z6m56bgkgfli7gp2l"; depends=[copula doParallel foreach MASS numDeriv R_utils SparseGrid VineCopula]; };
+  gofCopula = derive2 { name="gofCopula"; version="0.2-4"; sha256="1v54vhjhavz74bmnppp2cda4qsd57s2vh2j2d3ilwzbycva7kmkl"; depends=[copula doParallel foreach MASS numDeriv R_utils SparseGrid VineCopula]; };
   gofMC = derive2 { name="gofMC"; version="1.1.2"; sha256="0hbqx0z2517qgmp6sjg76hv74yrkfbswb9rmfjmsmcyzj2x67w86"; depends=[ggplot2 scales]; };
   gofastr = derive2 { name="gofastr"; version="0.3.0"; sha256="02jn4xbbafl7siwvkqns1818wmw813x9cvqfcnpnmcippiqhrb0b"; depends=[data_table quanteda slam SnowballC tm]; };
   goft = derive2 { name="goft"; version="1.3.4"; sha256="15n1av7r6w8hihxlgw9pd570qgrlcprkkacln15chvjs3b0i60la"; depends=[fitdistrplus]; };
@@ -7081,14 +7396,15 @@ in with self; {
   googleCloudStorageR = derive2 { name="googleCloudStorageR"; version="0.4.0"; sha256="1iwn0qjyxyg1xr1s492h7z2g5yzcfw8kasd4ghxmghnqvhzzf7vn"; depends=[assertthat curl googleAuthR httr jsonlite openssl yaml zip]; };
   googleComputeEngineR = derive2 { name="googleComputeEngineR"; version="0.2.0"; sha256="1kslsi7gc4na8pm8dyizswf9pfpdq1rprn08rd7kbxsisclbzc7y"; depends=[assertthat future googleAuthR httr jsonlite]; };
   googleLanguageR = derive2 { name="googleLanguageR"; version="0.2.0"; sha256="1l0gnynild95k9fw1d398zd4dkws97p13vvfv6jaklqj0xmh9ib8"; depends=[assertthat base64enc googleAuthR jsonlite magrittr purrr tibble]; };
-  googlePolylines = derive2 { name="googlePolylines"; version="0.6.1"; sha256="1g28py8amkfq8cgf297w9yv1n26wm2alb6gmcal3i39qfadkdhsv"; depends=[BH Rcpp]; };
+  googlePolylines = derive2 { name="googlePolylines"; version="0.7.1"; sha256="194wh92z65g1f4b1a5pdv2jlwkmdr3fjkj9kai993kn7zkpbkpa0"; depends=[BH Rcpp]; };
   googlePrintr = derive2 { name="googlePrintr"; version="0.0.1"; sha256="19rm78x8qd61ilc6h1kn3dw63m6dfsckqkd3n76krvi0akgl72w5"; depends=[googleAuthR httr jsonlite]; };
   googlePublicData = derive2 { name="googlePublicData"; version="0.16.1"; sha256="15hyslpqvncg21q581h061rfyg99y8lavqw1x8hzl7xzd49bn9r5"; depends=[readxl XML]; };
   googleVis = derive2 { name="googleVis"; version="0.6.2"; sha256="1idnp9ndgg2dwybdpw7q3pkaw9kw2vy2xkls9qykrpz1p6nf3mn1"; depends=[jsonlite]; };
-  googledrive = derive2 { name="googledrive"; version="0.1.1"; sha256="1fshv85s4ldw2kc7lbbdvrl260pz76z04awx1n6lg0f5xmba9rfg"; depends=[curl glue httr jsonlite purrr rlang tibble uuid]; };
+  googledrive = derive2 { name="googledrive"; version="0.1.2"; sha256="04167xqdfj99jp5i1029caah1wy9dpbwm7n543x7fmsik7czc2g5"; depends=[curl glue httr jsonlite purrr rlang tibble uuid]; };
   googleformr = derive2 { name="googleformr"; version="0.0.3"; sha256="0smykcjyqmk61ws5jk462l8x5hg0h9nwq55q5pqfgcq1j3yfniqh"; depends=[httr rvest xml2]; };
+  googlenlp = derive2 { name="googlenlp"; version="0.2.0"; sha256="0d0g18i3im2s5f14k69ym3vwf9a7zkaval3nwrip97xcl6kf4x9h"; depends=[dplyr httr jsonlite purrr readr rlang]; };
   googlesheets = derive2 { name="googlesheets"; version="0.3.0"; sha256="11q07nxys72wkxx9mawmjyf20gvwvrb7h3gpa73h6lgh2vgrwnv8"; depends=[cellranger dplyr httr jsonlite purrr readr stringr tibble tidyr xml2]; };
-  googleway = derive2 { name="googleway"; version="2.7.0"; sha256="129yyy21sdbhhffg23jkhs0d6f03di4da5mwgg8x8ckv7r9jraw8"; depends=[curl googlePolylines htmltools htmlwidgets jpeg jqr jsonlite magrittr scales shiny viridisLite]; };
+  googleway = derive2 { name="googleway"; version="2.7.1"; sha256="0axpr81p3gdp1nmfn000lk288sdn8z5qmzjvagdxqn5j44hq6sj1"; depends=[curl googlePolylines htmltools htmlwidgets jpeg jqr jsonlite magrittr scales shiny viridisLite]; };
   goric = derive2 { name="goric"; version="1.1-0"; sha256="1smjq9vljszgngs5i6x55jwg0imzc5gsfdqxzcs4541fp3pvk999"; depends=[MASS Matrix mvtnorm nlme quadprog]; };
   govStatJPN = derive2 { name="govStatJPN"; version="0.1"; sha256="03sywa7rl5rblvv370mfszz5ngp850qf32yydy1fdx10lv5amrfl"; depends=[]; };
   gower = derive2 { name="gower"; version="0.1.2"; sha256="1mbrj1lam3jfbby2j32shmmj5cn09zx3rkxbamq7q8sdg39b54gb"; depends=[]; };
@@ -7115,32 +7431,33 @@ in with self; {
   granova = derive2 { name="granova"; version="2.1"; sha256="161fznqlnwmw53abmg2n62lhxxda7400ljnadvcdvsm8f6kcjf80"; depends=[car]; };
   granovaGG = derive2 { name="granovaGG"; version="1.4.0"; sha256="0khqlqc6jg9cpdq06g6jlpfjcw3m6rj40ipljfai8g1630ril6q4"; depends=[ggplot2 gridExtra plyr RColorBrewer reshape2]; };
   grapes = derive2 { name="grapes"; version="1.0.0"; sha256="079b7w2xhb0a481s7qihhka0l9ydkjdph0865wjjkcbpr4775p26"; depends=[magrittr]; };
-  graphTweets = derive2 { name="graphTweets"; version="0.4.0"; sha256="1zw04s61wjgrx6r6fspp59y5l3bfjf68klcrkp7alaap5dpjsn9a"; depends=[dplyr igraph magrittr purrr reshape2 rtweet splitstackshape]; };
+  graphTweets = derive2 { name="graphTweets"; version="0.5.0"; sha256="1j85kvnp9qgs3r1bczcxb2havykalzr444r7a1qbc8swkp4f8llb"; depends=[combinat dplyr igraph magrittr purrr rtweet tidyr zeallot]; };
   grapherator = derive2 { name="grapherator"; version="1.0.0"; sha256="071by9b8figbsf4g0f8a8mgcdksjksc57mnlgggilw7py1yjnjlh"; depends=[BBmisc checkmate deldir ggplot2 lhs reshape2 vegan]; };
   graphframes = derive2 { name="graphframes"; version="0.1.1"; sha256="1qharg73aaw5xdvkngsxb9wzsgb4xc067cxm20d9yiz4qm7a9050"; depends=[sparklyr tibble]; };
   graphicalVAR = derive2 { name="graphicalVAR"; version="0.2.2"; sha256="1jzhqbdylpzc8d28vz2k34i9dpxx5x34bgvx73z8wjglnn6j27b8"; depends=[dplyr glasso glmnet igraph Matrix mvtnorm qgraph Rcpp RcppArmadillo]; };
   graphicsQC = derive2 { name="graphicsQC"; version="1.0-8"; sha256="12vg93xfmkv73i19vkb10q2qngmsxd3y42z3l6izdywbdc3cdfkg"; depends=[XML]; };
   graphkernels = derive2 { name="graphkernels"; version="1.6"; sha256="1gn3ihqz7m0rdvvc2fp7hsgq583wh5cnz7200a2ff89xc04zs3dc"; depends=[igraph Rcpp RcppEigen]; };
-  graphon = derive2 { name="graphon"; version="0.2.0"; sha256="0fdvi2nn7g39mc85jg3rgwyk2wjh2k60pd9lyivfbg3140k1yawh"; depends=[ROptSpace]; };
+  graphon = derive2 { name="graphon"; version="0.3.0"; sha256="0w5xgfhshdinwyyb3qc2rhz37w6n0p1clp83dz1vx67n2vbj7wha"; depends=[Rdpack ROptSpace]; };
   graphql = derive2 { name="graphql"; version="1.4"; sha256="103vggx9273dg4fkrhik4p1vj8qh7gxavyh933qxhajpmhnfhksh"; depends=[jsonlite Rcpp]; };
   graphscan = derive2 { name="graphscan"; version="1.1.1"; sha256="1dgjb0grdymhimdgwnddjcivgy2i9r1i1nni4v9mx0447skcahk9"; depends=[ape rgl snowfall sp]; };
   graticule = derive2 { name="graticule"; version="0.1.2"; sha256="1yvrijvyjilfql72dxj32b3sczqv065zj61729wrrzn63xcifvmb"; depends=[raster sp]; };
-  grattan = derive2 { name="grattan"; version="1.6.0.0"; sha256="0w8dqnj8di3fm2vp1bz2wdyh207rh9vwqc25mhxg73jjmls8rd33"; depends=[assertthat data_table fastmatch forecast hutils ineq magrittr Rcpp rsdmx zoo]; };
-  gravity = derive2 { name="gravity"; version="0.6"; sha256="15ngk6a5f6xjvisk6ma625iaw4ybg7722xgmnr4rnlmsgm95v668"; depends=[censReg glm2 lmtest MASS multiwayvcov sandwich survival]; };
-  grec = derive2 { name="grec"; version="1.2.0"; sha256="1djmi5nm4xdxzyikll3wcgfabqr952qqlyxad8frvxy878a85fpw"; depends=[imagine raster]; };
+  grattan = derive2 { name="grattan"; version="1.7.0.0"; sha256="1jy3yafymznb2bnjy9njh3sn422vsmmdlzs2is941y3syzji6l84"; depends=[assertthat data_table fastmatch forecast hutils ineq magrittr Rcpp rsdmx zoo]; };
+  gravity = derive2 { name="gravity"; version="0.8.5"; sha256="0qsa93sd9vqnkhnd8jgypv48fcaba9hwnpbkpgr5cr57dj1vwxzh"; depends=[censReg dplyr glm2 lmtest magrittr MASS multiwayvcov purrr Rdpack rlang sandwich survival tibble tidyr]; };
+  grec = derive2 { name="grec"; version="1.2.2"; sha256="0xr17xq4hvl6zaajj04cwymmpzfnbwb86z0ziarj5bc5wjfw0yb2"; depends=[imagine raster]; };
+  gren = derive2 { name="gren"; version="0.0.1"; sha256="1wb5wwdjxi7q36md7xzmbw5lrggcgghkz3pmxipjpxw8kfv804xp"; depends=[glmnet Iso pROC Rcpp RcppArmadillo]; };
   greport = derive2 { name="greport"; version="0.7-1"; sha256="1h1g3khb30n3y8l1sxpas2s6s667az4yxvsq42x5dfx8fic42p6n"; depends=[data_table Formula ggplot2 Hmisc lattice latticeExtra rms survival]; };
   greta = derive2 { name="greta"; version="0.2.3"; sha256="10vli747b5a1m53qszxk91wppg9511la9yc823qrr51s92z8i222"; depends=[coda progress R6 reticulate tensorflow]; };
   grex = derive2 { name="grex"; version="1.8"; sha256="0z81dlzk5vv51nwhfiijzpxgf71m4fsrfqzrbxx2kyf3f8c9xg1r"; depends=[]; };
-  greybox = derive2 { name="greybox"; version="0.2.2"; sha256="1kgxcg9502gn766p4qvdbixi25gc81xg49wlzv02gcsqf2nzrl1c"; depends=[forecast lamW]; };
+  greybox = derive2 { name="greybox"; version="0.3.2"; sha256="1vqkq015qzlqqajhxswiqikaw4ykjs5rasdwyjxj2ggq1ks78px8"; depends=[forecast lamW nloptr numDeriv]; };
   greyzoneSurv = derive2 { name="greyzoneSurv"; version="1.0"; sha256="115i0d4fy4p4g4vd419hj9f23hi8cbiyfilgpgmag91ilr1xpcdp"; depends=[Hmisc survAUC survival]; };
-  grf = derive2 { name="grf"; version="0.10.0"; sha256="1pfpgnnzqasai797kizmpv4sgr0i38amppmqwba22rs5mrz72c9w"; depends=[DiceKriging Matrix Rcpp RcppEigen sandwich]; };
+  grf = derive2 { name="grf"; version="0.10.1"; sha256="03i6gidz4jrwqcc60c4gv0l83d5ckm5pg5vm8bgbxc6dbg1636z3"; depends=[DiagrammeR DiceKriging lmtest Matrix Rcpp RcppEigen sandwich]; };
   gridBase = derive2 { name="gridBase"; version="0.4-7"; sha256="09jzw4rzwf2y5lcz7b16mb68pn0fqigv34ff7lr6w3yi9k91i1xy"; depends=[]; };
   gridDebug = derive2 { name="gridDebug"; version="0.5-0"; sha256="12zrl7p8p7071w5viymdipycja7a2arvy0aahgahd5nlx1k1gha0"; depends=[graph gridGraphviz gridSVG]; };
   gridExtra = derive2 { name="gridExtra"; version="2.3"; sha256="0fwfk3cdwxxim7nd55pn7m31bcaqj48y06j7an2k1v1pybk0rdl1"; depends=[gtable]; };
   gridGraphics = derive2 { name="gridGraphics"; version="0.3-0"; sha256="1p94flvq5h3x817pl1m0aj3sim87x6zdbpv9xrgdnqw3rxfzwgqs"; depends=[]; };
   gridGraphviz = derive2 { name="gridGraphviz"; version="0.3"; sha256="1jz0d6kc8ci55ffm6dns8bhak9xnaq7mg5mpv3fk53lircn7mwl5"; depends=[graph Rgraphviz]; };
   gridSVG = derive2 { name="gridSVG"; version="1.6-0"; sha256="06nxp0h6clsfxcx5lf11sgzq7v4ijbynh6hldbnpm6pqwn18hb0j"; depends=[jsonlite XML]; };
-  gridsample = derive2 { name="gridsample"; version="0.2.0"; sha256="0hpfhkma60h59z3akjqs7igs6zg00xs3jlq3sm48gxbjrk7fb5sm"; depends=[data_table deldir geosphere maptools raster rgdal rgeos sp spatstat spatstat_utils]; };
+  gridsample = derive2 { name="gridsample"; version="0.2.1"; sha256="062aryy26x07m31r6m0fj1zgnjhivlh1fikx9lv2rdgk0rh4yzz0"; depends=[data_table geosphere maptools raster rgdal rgeos sp spatstat spatstat_utils]; };
   gridsampler = derive2 { name="gridsampler"; version="0.6"; sha256="0wqpqg9c372sv8zqks6v93gawiyfghw58hn7m8q45dxpqm16ss3k"; depends=[BiasedUrn ggplot2 plyr reshape2 shiny shinyBS shinythemes]; };
   grnn = derive2 { name="grnn"; version="0.1.0"; sha256="1dxcmar42g9hz4zlyszlmmnnsnja0gxfggav5jxv0gkp32rkd0wh"; depends=[]; };
   groc = derive2 { name="groc"; version="1.0.6"; sha256="0x7rrf5bw05s257xhzklpc6hslpjnzjx02hlrz4r9zixbfffmawc"; depends=[MASS mgcv pls robust robustbase rrcov]; };
@@ -7150,19 +7467,19 @@ in with self; {
   groupdata2 = derive2 { name="groupdata2"; version="1.0.0"; sha256="11j5p3afr5qc227ljdwwwp17jzaylqlhc7g0gr3jvgrhjnijs2a0"; depends=[dplyr numbers plyr]; };
   grouped = derive2 { name="grouped"; version="0.6-0"; sha256="1glxgacpwk7yjbkwg5ci6bmb2il6hf5zhydwi5bbq6hc032m9976"; depends=[MASS]; };
   groupedSurv = derive2 { name="groupedSurv"; version="1.0.3"; sha256="15ah8v1mfyq9xi27kkl0vwwbhf16vd4hy9h809jlw1i7b1zwg4pm"; depends=[BH doParallel doRNG foreach qvalue Rcpp RcppEigen]; };
-  groupedstats = derive2 { name="groupedstats"; version="0.0.1"; sha256="19rdn86zzv40f0ha0q043wj538scbj1x2j80bwllcbl78cmpq3i3"; depends=[broom crayon dplyr glue magrittr purrr rlang robust rstudioapi sjstats skimr tibble tidyr]; };
+  groupedstats = derive2 { name="groupedstats"; version="0.0.3"; sha256="026z5gj1ghnc1y38k4s33b3m2wmm9kdxf62aa90rg0xgq6gc9061"; depends=[broom broom_mixed crayon dplyr glue lme4 magrittr purrr rlang robust rstudioapi sjstats skimr tibble tidyr]; };
   groupsubsetselection = derive2 { name="groupsubsetselection"; version="1.0.3"; sha256="118cj5xc8nbq4fs2gbzg1nhynixaflbl0si77gyy4ybw0drsz4nj"; depends=[]; };
   grove = derive2 { name="grove"; version="1.1"; sha256="0fqsj5dx7py7cin3hvfkxglh8v3x0dwj6cxy4h5vbddjl687db5x"; depends=[Rcpp RcppArmadillo wavethresh]; };
   growcurves = derive2 { name="growcurves"; version="0.2.4.1"; sha256="0h96c1hd6cdzc2l2a9dakmxn2hspvr0fpx9938iscm4hi9ds97m2"; depends=[Formula ggplot2 Rcpp RcppArmadillo reshape2]; };
   growfunctions = derive2 { name="growfunctions"; version="0.14"; sha256="1pvyiw20fxm3l4giyq4iizc67yy36i6wq4ch2qyqg4mfd4bki2g4"; depends=[ggplot2 mvtnorm Rcpp RcppArmadillo reshape2 spam]; };
   growth = derive2 { name="growth"; version="1.1.0"; sha256="0d1hc56ybp5chckqv5q5jvpgbl7xn9dkbc4dd4sz5gawn1hngbxm"; depends=[rmutil]; };
-  growthcurver = derive2 { name="growthcurver"; version="0.2.1"; sha256="0q70g940ggpwnx2cpq2j8ambfbj9sqw6ivyp9cya1nbn05bah9ds"; depends=[caTools minpack_lm]; };
+  growthcurver = derive2 { name="growthcurver"; version="0.3.0"; sha256="0q7g00b9sxxlq8yscmmccr8r4mwzpc707arbrr46iii8ra9icvlb"; depends=[minpack_lm]; };
   growthmodels = derive2 { name="growthmodels"; version="1.2.0"; sha256="1wy5z77819s3daa0mifafcjfkggsq0ac522yagj86ml3vf7yqppj"; depends=[]; };
   growthrate = derive2 { name="growthrate"; version="1.3"; sha256="1ak3yqlm7dnkdjlmikwa57qnf7yd9n1ixz36gv3shr252750x9cd"; depends=[clime Matrix mvtnorm]; };
   growthrates = derive2 { name="growthrates"; version="0.7.2"; sha256="1szyc85gi0wgg98br53lxqpamic1srvfiyq1m818j38xnlyj1lxw"; depends=[deSolve FME lattice]; };
   grpSLOPE = derive2 { name="grpSLOPE"; version="0.2.1"; sha256="1r9irf83f7szhkdqis2rakil8fsr3rqsfrj4dmbg3r3rnr8wl8nh"; depends=[SLOPE]; };
-  grplasso = derive2 { name="grplasso"; version="0.4-5"; sha256="15bqckq9qjdlllhfpb21vzgi9msbl544alkrz01w1vvb3hk1847y"; depends=[]; };
-  grpreg = derive2 { name="grpreg"; version="3.1-4"; sha256="0lxr83imsg3g9nk2cmvmg6mying23f05f5q2xniiqvayrd7i4ii9"; depends=[Matrix]; };
+  grplasso = derive2 { name="grplasso"; version="0.4-6"; sha256="0xr6plgnc3lp93rd4jk4dqjix8kgl8s2b68fh41k6jwd5y8d7pks"; depends=[]; };
+  grpreg = derive2 { name="grpreg"; version="3.2-0"; sha256="0jvkdmhm7q22z7faz1k8n87jw3f16bqr7yqmj2nqap1ha7c1ib8m"; depends=[Matrix]; };
   grpregOverlap = derive2 { name="grpregOverlap"; version="2.2-0"; sha256="1kq8wxpx21irwckndgfkzdy5jgzf7pmcwpclmjzjxznv6cyaikd0"; depends=[grpreg Matrix]; };
   grpss = derive2 { name="grpss"; version="3.0.1"; sha256="01bjjhv3vkvn5h363g5a9dlm7kzq10q7ixmrc0kkq5hsbs31vl3x"; depends=[doParallel foreach grpreg MASS]; };
   grr = derive2 { name="grr"; version="0.9.5"; sha256="0arbcgrvhkwb5xk4nry1ffg2qj0v8ivhjghdr505ib4357g0c9i9"; depends=[]; };
@@ -7186,7 +7503,7 @@ in with self; {
   gstat = derive2 { name="gstat"; version="1.1-6"; sha256="0snvga824v1kbd3xp46652bv6drfrgkjsi5zrbdcliqpqz79wk9f"; depends=[FNN lattice sp spacetime zoo]; };
   gsubfn = derive2 { name="gsubfn"; version="0.7"; sha256="00j6b8b6xsx6v370h220x233rpk6asca78165y3d48jpwvwisdc9"; depends=[proto]; };
   gsw = derive2 { name="gsw"; version="1.0-5"; sha256="0lv4x4is53xybgg205dncizpnqnakqk47b5wgys2kr4ixqc8jipb"; depends=[testthat]; };
-  gsynth = derive2 { name="gsynth"; version="1.0.6"; sha256="0fzdlflrl9qlvbzjdspws3naabwyphwqys01wp4wkw5y7whq0mar"; depends=[abind doParallel foreach GGally ggplot2 mvtnorm Rcpp RcppArmadillo]; };
+  gsynth = derive2 { name="gsynth"; version="1.0.9"; sha256="1m9s3gymm0z6frfzmz7kv8cbdnla2vp4aam5b2zzcxwflzwbplm3"; depends=[abind doParallel foreach GGally ggplot2 MASS mvtnorm Rcpp RcppArmadillo]; };
   gt4ireval = derive2 { name="gt4ireval"; version="2.0"; sha256="1d567iz57xqszm45l1wq4n2qrrmyz8ssll1vllfmncb9ibbnx4f3"; depends=[]; };
   gtWAS = derive2 { name="gtWAS"; version="1.0.0"; sha256="1pk7m1apgksbh8a3xb94aj3wp9dbcv5rm6brdcjb5fsgxj7iaq5c"; depends=[]; };
   gtable = derive2 { name="gtable"; version="0.2.0"; sha256="0vz7073m0a2q12qzzihrfh5c2kx5jqi5l7z470fxmwqghdllh7l0"; depends=[]; };
@@ -7195,13 +7512,12 @@ in with self; {
   gtheory = derive2 { name="gtheory"; version="0.1.2"; sha256="1xc1jl69z5csalqk3hx83s53awcl1fjq6p0x2pczhs7dsvwd6lks"; depends=[lme4]; };
   gtools = derive2 { name="gtools"; version="3.8.1"; sha256="0f5syk1qq6cjq6hwymvkiyhzwa389z94722v881ipbfqkd2q8505"; depends=[]; };
   gtop = derive2 { name="gtop"; version="0.2.0"; sha256="1nvvbf181x0miw3q0r2g0nklz29ljdsd07cazaajfls7pmhi0xw9"; depends=[hts lassoshooting quadprog]; };
-  gtrendsR = derive2 { name="gtrendsR"; version="1.4.1"; sha256="08zfh73viv9p1c4qmw3jnywa5xzbm39kfi60whl0w5pvh3q9pksf"; depends=[anytime curl ggplot2 jsonlite]; };
-  gtsf = derive2 { name="gtsf"; version="0.1.0"; sha256="11b1rgqzyywpk0qjm575l98irbifgkdlfhhynccils5y8f7vyhf8"; depends=[assertthat dplyr magrittr readr rlang sf stringr tibble]; };
+  gtrendsR = derive2 { name="gtrendsR"; version="1.4.2"; sha256="1rph2iv9dirzw1acgq7n56ra20jdynq99biah5v6nybmxdbmznzd"; depends=[anytime curl ggplot2 jsonlite]; };
   gtx = derive2 { name="gtx"; version="0.0.8"; sha256="0x71jji2yldi9wpx8d3nldbjfj4930j7zcasayzbylf9094gmg26"; depends=[survival]; };
   guess = derive2 { name="guess"; version="0.1"; sha256="198pxi0yipgm9wccpj3y4a0gkibhyxcmb7v5dz7ipzrk44ha5g6j"; depends=[Rsolnp]; };
-  gumbel = derive2 { name="gumbel"; version="1.10-1"; sha256="12rkri8bvgjn0ylf1i4k9vpb8mvbasidvx2479kmis2rc1p07qq7"; depends=[]; };
+  gumbel = derive2 { name="gumbel"; version="1.10-2"; sha256="0s9idcrssnl683abwky9zvqylciy0b51z935yfvb2bm8b0b0b4ij"; depends=[]; };
   gunsales = derive2 { name="gunsales"; version="0.1.2"; sha256="02vz16lhym72vvf48yai1g371wygdlmi63a6ylc147l0b69jgw31"; depends=[data_table dplyr ggplot2 seasonal x13binary zoo]; };
-  gustave = derive2 { name="gustave"; version="0.3.0"; sha256="1vijf5x07l507r0li6hs0hhxia83llpykllcrkhm00ms5na7p4jz"; depends=[MASS Matrix]; };
+  gustave = derive2 { name="gustave"; version="0.4.0"; sha256="1swnkb1134mnlnfpdchyhmrhr0r5nw90yczsg52hwbhj8hjl2axp"; depends=[Matrix]; };
   gutenbergr = derive2 { name="gutenbergr"; version="0.1.4"; sha256="1xf9h0ikfzgq6bzzxa7wih29cgbfk6lgdv041fprxbd9rz38agi9"; depends=[dplyr lazyeval purrr readr stringr urltools]; };
   gvc = derive2 { name="gvc"; version="0.5.2"; sha256="0cfvli6ap5kw3agv94d7g7rhmlxd66yyngc7c9pl4fsxf7sm6nx4"; depends=[decompr diagonals]; };
   gvcR = derive2 { name="gvcR"; version="0.1.0"; sha256="0r54924b9a65k11p8y3p7jxbvmpb7s7vs87v65hhl98gxacj5hk8"; depends=[dplyr eda4treeR lme4 magrittr]; };
@@ -7214,28 +7530,31 @@ in with self; {
   gwrr = derive2 { name="gwrr"; version="0.2-1"; sha256="1fjk217pimnmxsimqp9sn02nr1mwy3hw3vsr95skbfsd6vdda14d"; depends=[fields lars]; };
   gym = derive2 { name="gym"; version="0.1.0"; sha256="0vcwzgawqwjsf65hr1mbjkz3px8zsibfkn42jpsg39n13jpfjq8v"; depends=[httr jsonlite]; };
   gyriq = derive2 { name="gyriq"; version="1.0.2"; sha256="12vbnhianzi4l43czaxrbnbkz1h8lvmwjys0y3c2ml3g6dmwwfji"; depends=[CompQuadForm irlba mvtnorm survival]; };
-  h2o = derive2 { name="h2o"; version="3.20.0.2"; sha256="1pchml5d8py4cnii5lmmw65cglixvgwgvl592kl3ix09w34grsps"; depends=[jsonlite RCurl]; };
+  h2o = derive2 { name="h2o"; version="3.20.0.8"; sha256="17piklf91fmpf7bl4sk300bwnvsxljad925whs2h12xhqgw3amgv"; depends=[jsonlite RCurl]; };
   h2o4gpu = derive2 { name="h2o4gpu"; version="0.2.0"; sha256="06d2rrr27xvnsai6zjiaiw0jjfzdza1cc39c03d6pjkvnh0mqh2c"; depends=[magrittr reticulate]; };
   h5 = derive2 { name="h5"; version="0.9.9"; sha256="14p7i1sj24ky87kd7qr3n9fc9l64s0bp0rwbyl6i2x69xn75gpsx"; depends=[Rcpp]; };
-  hBayesDM = derive2 { name="hBayesDM"; version="0.5.0"; sha256="174z98jvi04df04lpdxh3j8lmjvgrg287nxfnrcvjkibc0jiss4m"; depends=[ggplot2 loo Rcpp rstan rstantools]; };
-  hIRT = derive2 { name="hIRT"; version="0.1.2"; sha256="0pqp6bycr13di1hbi5sqnkiannz2hyg0ysshswv2i9fp0vkhdhqf"; depends=[pryr rms]; };
-  hNMF = derive2 { name="hNMF"; version="0.6"; sha256="0a6wf9mhv3b7wb8kimjqm1sj9k8d2j98p7i707bgn5hvmyc39bnf"; depends=[MASS NMF nnls oro_nifti R_matlab rasterImage spatialfil]; };
+  hBayesDM = derive2 { name="hBayesDM"; version="0.6.0"; sha256="0il3w1vlw8p02lq5svymv5qafmal784c037dbjk1f6j96lg7i69f"; depends=[ggplot2 loo Rcpp rstan rstantools]; };
+  hIRT = derive2 { name="hIRT"; version="0.1.3"; sha256="12rg4srh9s6a72gvb5f7qn9zar6yaqa7p0mfmazfqj353icrannd"; depends=[pryr rms]; };
+  hNMF = derive2 { name="hNMF"; version="0.9"; sha256="0qavavgiqah4dv0gz8v5ssz637sd341n9s0pyc232n2jhqpzl0cz"; depends=[MASS NMF nnls oro_nifti R_matlab rasterImage spatialfil]; };
   hR = derive2 { name="hR"; version="0.1.3"; sha256="0s7c2aiq58c2zmv25m42cxp5chzkp5grz5bjqrknfkwjy21679h1"; depends=[data_tree reshape2]; };
   hSDM = derive2 { name="hSDM"; version="1.4"; sha256="1jq6hdnyv446ng62srip0b48kccf0qw3xqym3fprg74mjdy3inqr"; depends=[coda]; };
   haarfisz = derive2 { name="haarfisz"; version="4.5"; sha256="1qmh4glwzqwqx3pvxc71rlcimp1l0plgdf380v9hk0b4gj7g3pkf"; depends=[wavethresh]; };
+  hablar = derive2 { name="hablar"; version="0.1.0"; sha256="0l7xb2z41ddm1dlq3f0k00wdskai17wcwfkia1y1k88vqjcakpzg"; depends=[dplyr]; };
   hail = derive2 { name="hail"; version="0.1.1"; sha256="1nrc9msqyy5iq2i6p8875anbqswxl2z6vdd4hvihnl22qh5fnbvh"; depends=[]; };
   hamlet = derive2 { name="hamlet"; version="0.9.6"; sha256="076fh28grlrv38qywshi79m84jsz1ck9k4n0rg4svvr3gqkdbcn2"; depends=[]; };
   hansard = derive2 { name="hansard"; version="0.6.0"; sha256="13h68b300c4lkqbl5gw4hkqcbb2ikvan4hx8092ds995514rg4x8"; depends=[dplyr httr jsonlite lubridate stringi tibble tidyr]; };
   hapassoc = derive2 { name="hapassoc"; version="1.2-8"; sha256="0qs5jl0snzfchgpp6pabncwywxcmi743g91jvjiyyzw0lw85yv4s"; depends=[]; };
   haplo_stats = derive2 { name="haplo.stats"; version="1.7.9"; sha256="19kxascqq5qz0zdxx0w837ji207y1z2ggxkl4vmlbay03k2dw2mx"; depends=[rms]; };
-  haploR = derive2 { name="haploR"; version="2.0.3"; sha256="0m2pqrg1734x2ab19dqf5mqgrzibd2l5g6800if0a92bi51q67bx"; depends=[DT httr plyr RUnit tibble XML]; };
+  haploR = derive2 { name="haploR"; version="2.0.6"; sha256="0f0i687wrsmli1z48vghwbd4595nwvv2bajnn0jkyi9fw9r2vnn0"; depends=[DT httr plyr RUnit tibble XML]; };
   haploReconstruct = derive2 { name="haploReconstruct"; version="0.1.2"; sha256="17zdl9c3yy6jdzv1wp0ailbga456pmmybzxh3dldymhj8qf32cx0"; depends=[data_table dbscan foreach gplots igraph matrixStats stringi zoo]; };
   haplotyper = derive2 { name="haplotyper"; version="0.1"; sha256="0pcshlh29c4zazhkcq4371kqh9inrbx494y5a1qb1k2c92fkax31"; depends=[]; };
   haplotypes = derive2 { name="haplotypes"; version="1.0"; sha256="0pwihfi6g4jrnkha9s9rksq0fc8j04mlrwf0295rmy49y19rg84s"; depends=[network]; };
   happybiRthday = derive2 { name="happybiRthday"; version="0.0.1"; sha256="0rrvi5kx09p74xwxvqcwibbh4qjlk4jxb89grx74chjxk9ak2yv8"; depends=[data_table dplyr gh lubridate tidyr]; };
+  happytime = derive2 { name="happytime"; version="0.1.0"; sha256="03iblwb6w2dh9sibfi4nlswidck13hzsn7123838zp4sxfnrp041"; depends=[]; };
   hapsim = derive2 { name="hapsim"; version="0.31"; sha256="0jw6iw89d4y8wjy58biv40szp123ql7frz1mmdjdxljmwaby963h"; depends=[MASS]; };
   harmonicmeanp = derive2 { name="harmonicmeanp"; version="1.0"; sha256="071ysgyi8daq8q1vqzgypkz4bgaxr0iw4djv906vkfx5ywihr768"; depends=[FMStable]; };
   harrietr = derive2 { name="harrietr"; version="0.2.3"; sha256="0n6vsqysj4ijh06z6nqmj8x1z4w9711dxhbfp8p8fwi0l75pj0cj"; depends=[ape dplyr ggtree lazyeval magrittr rlang tidyr]; };
+  harrypotter = derive2 { name="harrypotter"; version="0.1.0"; sha256="0h02rli2l42a2vjgrw7fqxib31pyqcyhqam499bpybk5crqnpffx"; depends=[ggplot2 gridExtra MASS]; };
   harvestr = derive2 { name="harvestr"; version="0.7.1"; sha256="0xgxzbfbc33asfm8sl2y60ki6bwgd6vdh9nz466crkx7m9lsvll8"; depends=[digest foreach plyr]; };
   hash = derive2 { name="hash"; version="2.2.6"; sha256="0mkx59bmni3b283znvbndnkbar85fzavzdfgmwrhskidsqcz34yz"; depends=[]; };
   hashFunction = derive2 { name="hashFunction"; version="1.0"; sha256="1v57xj8xwv6xhxvgp0zxgvs5vcjw8z5k2ciwbn0jxf4ilyd66cgj"; depends=[]; };
@@ -7258,29 +7577,32 @@ in with self; {
   hda = derive2 { name="hda"; version="0.2-14"; sha256="0azfxyws7yslcqplfddmdp5ngk91j5h7llvrg77yh5z0kkd09j1b"; depends=[e1071]; };
   hdbinseg = derive2 { name="hdbinseg"; version="1.0.1"; sha256="0fy9cqrygsnxkb3nxg56md19svrvkbijpxkqfk9p18cj5ibwrq94"; depends=[doParallel foreach iterators Rcpp RcppArmadillo]; };
   hddplot = derive2 { name="hddplot"; version="0.59"; sha256="18llkpawm12cjxlcrlra60m16virfpjqiaqkvy9mb3wq1zif61rh"; depends=[MASS multtest]; };
-  hdf5r = derive2 { name="hdf5r"; version="1.0.0"; sha256="1s6p4cj909kc635fh5xpl87bqlcdj3dn3r1wk5g40abimk2b0pva"; depends=[bit64 R6]; };
+  hddtools = derive2 { name="hddtools"; version="0.8.2"; sha256="02gbqlzwxc77gllgz9sf2s73y4ngyb4warabdfyj2sm2g7jl6y12"; depends=[gdata Hmisc raster RCurl rgdal rnrfa sp stringr tibble XML zoo]; };
+  hdf5r = derive2 { name="hdf5r"; version="1.0.1"; sha256="0h222q80li8rs3cv4c5lvv3g91ygd51w43ay6fwyk9q9d315vwrj"; depends=[bit64 R6]; };
   hdi = derive2 { name="hdi"; version="0.1-6"; sha256="1lzy4jcz14j1qi6z4j1sq7z3z75n8jygnzlvqjf45vn1sqil17cq"; depends=[glmnet linprog MASS scalreg]; };
   hdlm = derive2 { name="hdlm"; version="1.3.1"; sha256="1zl6bksw0apkmn5shf8qjpxjyx6vb40dc4m4db76hhn5nhcp10ic"; depends=[foreach glmnet iterators MASS Matrix]; };
   hdm = derive2 { name="hdm"; version="0.2.3"; sha256="0nj7pbkygzbiraw1b3pqv3bnkjhi1a0h48q0zgkcq8y79kj2f8cl"; depends=[checkmate Formula ggplot2 glmnet MASS]; };
-  hdme = derive2 { name="hdme"; version="0.2.0"; sha256="03fmn7yxgx56329923pzqkjfrdg0aw2i7jj1sdf0cphzmi7m426n"; depends=[ggplot2 glmnet Rcpp RcppArmadillo Rdpack]; };
+  hdme = derive2 { name="hdme"; version="0.2.1"; sha256="0kcpc0ygjk8d6v099x1m5hi6dbapjcc0lzjsg9779i6bbf43mls2"; depends=[ggplot2 glmnet Rcpp RcppArmadillo Rdpack]; };
   hdnom = derive2 { name="hdnom"; version="5.0"; sha256="0g7l5km18j11qfw8iq9ybl8lzdq6fk2g7cjc2yjsm3ava60n4xqh"; depends=[foreach ggplot2 glmnet gridExtra ncvreg penalized rms survAUC survival]; };
   hdpca = derive2 { name="hdpca"; version="1.0.0"; sha256="1sv7caw4nhpcvsb7fxpvf2b5zskvfsv004hrqc51b5jx4fsc7y92"; depends=[boot lpSolve]; };
   hdrcde = derive2 { name="hdrcde"; version="3.2"; sha256="1901mg2k2ch9fzn1n9k0kmxkgd1m4pxvrda7mv0mp64nf4mx43xw"; depends=[ash ggplot2 KernSmooth ks locfit RColorBrewer]; };
   hds = derive2 { name="hds"; version="0.8.1"; sha256="1smg5ixrl7f2x3wn7s5i26dyadn5sigpf4jsk236z1bhnz617ax4"; depends=[survival tensor]; };
-  healthcareai = derive2 { name="healthcareai"; version="2.1.0"; sha256="1bzlgdf3gfgayw0axiwhbm9x2rqfyibkwymw2mm28fdz65r4n73i"; depends=[broom caret cowplot data_table dbplyr dplyr e1071 ggplot2 glmnet lubridate MLmetrics purrr ranger recipes rlang stringr tibble tidyr xgboost]; };
+  healthcareai = derive2 { name="healthcareai"; version="2.2.0"; sha256="1i1xnxd2v8qbv8pqn7w3ivh1yv4nvxm5llwhxd24gfzqkxck7c3w"; depends=[broom caret cowplot data_table dbplyr dplyr e1071 ggplot2 glmnet lubridate MLmetrics purrr ranger recipes rlang ROCR stringr tibble tidyr xgboost]; };
   heatex = derive2 { name="heatex"; version="1.0"; sha256="0c7bxblq24m80yi24gmrqqlcw8jh0lb749adsh51yr6nzpap6i9n"; depends=[]; };
   heatmap_plus = derive2 { name="heatmap.plus"; version="1.3"; sha256="0rzffm15a51b7l55k0krk6w7v8czy3vpwz1qmbybr7av0pln7wn3"; depends=[]; };
   heatmap3 = derive2 { name="heatmap3"; version="1.1.1"; sha256="14zkij0gr9awzic71k2j7pniamkywfvwrifdk7jbds70zsi30ph5"; depends=[fastcluster]; };
   heatmapFit = derive2 { name="heatmapFit"; version="2.0.4"; sha256="1rswp1wp58f21fpyjybcvvmnn53kr54ij83hp05qbvl7yn1fsnrb"; depends=[]; };
-  heatmaply = derive2 { name="heatmaply"; version="0.15.0"; sha256="0314nmlfwvgb9xmfvnw15l4is59dq1yq8i9461bykhj26jppyib2"; depends=[assertthat colorspace dendextend ggplot2 gplots htmlwidgets magrittr plotly RColorBrewer reshape2 scales seriation viridis webshot]; };
-  heatwaveR = derive2 { name="heatwaveR"; version="0.3.0"; sha256="1pfbhjnky0403hwjy29ady4q41vsgk3m3mwdki5ybkp9hx0c3zm3"; depends=[data_table dplyr ggplot2 lubridate Rcpp RcppArmadillo RcppRoll tibble zoo]; };
+  heatmaply = derive2 { name="heatmaply"; version="0.15.2"; sha256="0h8s5djzj4mrmaswlcaap6jbwxrkbzc43bbqik3qf8vrqz335w04"; depends=[assertthat colorspace dendextend ggplot2 gplots htmlwidgets magrittr plotly RColorBrewer reshape2 scales seriation viridis webshot]; };
+  heatwaveR = derive2 { name="heatwaveR"; version="0.3.3"; sha256="0j2p1lndzsp90hcnf2w4wn3brjs1si1ag1qk8n1jxy3c3wlapiak"; depends=[data_table dplyr ggplot2 lubridate Rcpp RcppArmadillo RcppRoll tibble zoo]; };
   heavy = derive2 { name="heavy"; version="0.38.19"; sha256="15bg2qqkslkqfnsq3ixbgmq72xagh8laji0265l06xgf2l6045kx"; depends=[]; };
+  hedgehog = derive2 { name="hedgehog"; version="0.1"; sha256="1mvjnm2zlc4pvw9vnhxr0dj1g1sfqvlrnnhcipzfbvr147yan9l5"; depends=[rlang testthat]; };
   heemod = derive2 { name="heemod"; version="0.9.2"; sha256="0qln5c4m11vxpsa0l07qrzs006b05hsl342pc5dgz0hwdpn5dd9j"; depends=[dplyr ggplot2 lazyeval memoise mvnfast plyr pryr tibble]; };
   hei = derive2 { name="hei"; version="0.1.0"; sha256="1cvwdkm5c9p3cfgpgdj0r7222mzz1jghq2i5f20xh3786gx05sqd"; depends=[nhanesA]; };
   heims = derive2 { name="heims"; version="0.4.0"; sha256="0vnq31jwn09grni4gdhf1hzd87b62as4f65b2qw7ky6mi38ahr5d"; depends=[bit64 data_table fastmatch hutils lubridate magrittr]; };
   helixvis = derive2 { name="helixvis"; version="0.9.1"; sha256="1xc55wyky3gnbs4gkmn1v74vgj4azriwlyd4psmc644w0rnajfjc"; depends=[plotrix]; };
   hellno = derive2 { name="hellno"; version="0.0.1"; sha256="1j787rw9hh75bvkckmlz5xkgwc22gd7si3mgjd7v60dd6lykfa88"; depends=[]; };
   helloJavaWorld = derive2 { name="helloJavaWorld"; version="0.0-9"; sha256="1a8yxja54iqdy2k8bicrcx1y3rkgslas03is4v78yhbz42c9fi8s"; depends=[rJava]; };
+  helminthR = derive2 { name="helminthR"; version="1.0.6"; sha256="0h4r0f6aaxh0bgcmrvbsh7vkw2jhw1xqnnx9bzqai0s842697m88"; depends=[ggmap httr knitr magrittr plyr rmarkdown rvest xml2]; };
   helsinki = derive2 { name="helsinki"; version="0.9.29"; sha256="0bn5iyxjn9qs6f0dmhv51ssayywbx1rayh80zbzk0gsm94nhs0d9"; depends=[maptools RCurl rjson sp]; };
   heplots = derive2 { name="heplots"; version="1.3-5"; sha256="1vyhfkp66gi17jni3gsbv9kn1s0n00qigr13q8xbzbgylz5jjiln"; depends=[car MASS]; };
   here = derive2 { name="here"; version="0.1"; sha256="1vb5dxqdpimy51q1gjsypyq14p2hhvj7wsvh6g35pj1g03cyg9av"; depends=[rprojroot]; };
@@ -7289,7 +7611,7 @@ in with self; {
   hermite = derive2 { name="hermite"; version="1.1.2"; sha256="0j9s7ayvbvmgwybrvf703b72qbn8gskb105pis19ig2sslllzda3"; depends=[maxLik]; };
   hesim = derive2 { name="hesim"; version="0.1.0"; sha256="002phncl1glv3c3gwp9ifpk56j06rka26a3774xlj3zcs6izglns"; depends=[data_table Rcpp RcppArmadillo]; };
   het_test = derive2 { name="het.test"; version="0.1"; sha256="08kxp81dx32anh0k5b65x7w7madwnn9hiabdrk6ck6b6mx37x26v"; depends=[vars]; };
-  hetGP = derive2 { name="hetGP"; version="1.0.2"; sha256="0dffkn11pm1x5jafc7yzy0jh4c2qqipfzhw205qiqxk5gny185k8"; depends=[DiceDesign MASS Rcpp]; };
+  hetGP = derive2 { name="hetGP"; version="1.1.0"; sha256="1m752a250msayqz8kwdi1r6lrww9pmc6qb6l9hlnfl2ds3qiks83"; depends=[DiceDesign MASS Rcpp]; };
   hetmeta = derive2 { name="hetmeta"; version="0.1.0"; sha256="023bdjsv0ibisz47vaap9yamzjna4hhndk3haw2g1cm92wnrdra5"; depends=[metafor]; };
   hett = derive2 { name="hett"; version="0.3-2"; sha256="1kmspw0738pdall5scmllsa79dynliai2glk1h5rzm4030r5rd6j"; depends=[lattice MASS]; };
   heuristica = derive2 { name="heuristica"; version="1.0.1"; sha256="1myivlqw6a8wh97ma9lrpgvaqb0vn4kj8yp9r4z5vc4pxgmm48g6"; depends=[Hmisc]; };
@@ -7300,11 +7622,12 @@ in with self; {
   hflights = derive2 { name="hflights"; version="0.1"; sha256="1rb6finck13i6949i6hsgfk90q4ybxh1m3is2mlw2m6087bpzfbd"; depends=[]; };
   hgam = derive2 { name="hgam"; version="0.1-2"; sha256="1flcc67n8kbh9m5phdfl587xg1x935zbp305y0gdmkc8vpkiwpcf"; depends=[grplasso lattice rgl]; };
   hglasso = derive2 { name="hglasso"; version="1.2"; sha256="1qq41ma33wz7qjs5zx72yvngpsiq62z9sd6d5hvvl83brq0fcr4b"; depends=[fields glasso igraph mvtnorm]; };
-  hglm = derive2 { name="hglm"; version="2.1-1"; sha256="1vr1332db60fqbck0nplfw5dnxpb7sa3irh80k2hyx4aw74ckr2k"; depends=[hglm_data MASS Matrix]; };
+  hglm = derive2 { name="hglm"; version="2.2-0"; sha256="0gb61yb1kk4dsb4i6sdh0r2ba7byl7hm5fqy8f12v1l4q40ymwq7"; depends=[hglm_data MASS Matrix]; };
   hglm_data = derive2 { name="hglm.data"; version="1.0-0"; sha256="1hrq1jac658z5xjsg03nfkb4kwm9z44bhciv5chk74ww8gjr9j9q"; depends=[MASS Matrix]; };
   hgm = derive2 { name="hgm"; version="1.17"; sha256="11hv4pfv3gqiargvwvrxqzfji75j291w1nilawf8yjc3isnc4wjp"; depends=[deSolve]; };
+  hgutils = derive2 { name="hgutils"; version="0.2.3"; sha256="12y2wxyvd4kjc548baha5mfn3r4ci4a0cyr7d8wh5hldsz6vkg08"; depends=[crayon limSolve magrittr stringr XML]; };
   hhh4contacts = derive2 { name="hhh4contacts"; version="0.13.0"; sha256="17f31xhh6kk7sx5d5dvpwpvl72wd45zgb4fcpdayx3yrm719csz9"; depends=[surveillance]; };
-  hhi = derive2 { name="hhi"; version="1.1.0"; sha256="0f0b6a2zr2nipcx4p8n2wx088kndh6bd150f80619kjfizr55x2d"; depends=[ggplot2]; };
+  hhi = derive2 { name="hhi"; version="1.2.0"; sha256="1yl52c3nqdi8v60sr01l0vv8359803dm2i4c9ifazgj3h3a4h0yp"; depends=[ggplot2]; };
   hht = derive2 { name="hht"; version="2.1.3"; sha256="022a8zz2m34q89h29jglfj21knlqd8dwi85qmsi78ly1vacnzap8"; depends=[EMD fields spatstat]; };
   hiPOD = derive2 { name="hiPOD"; version="1.0"; sha256="1i15ickz2s0kffh99qq30pl5hsl0lbj0kp55jnbv4x72hndzhmla"; depends=[rgl]; };
   hiddenf = derive2 { name="hiddenf"; version="2.0"; sha256="0shc1kfiq527mkc5i97zcm51hsvknnhjg7dyfvbfqyk145v6sz00"; depends=[]; };
@@ -7317,7 +7640,7 @@ in with self; {
   hierfstat = derive2 { name="hierfstat"; version="0.04-22"; sha256="1fav2v2996v5kb1ffa6v5wxfm921syxg6as034vd3j4jfhdibyfx"; depends=[ade4 adegenet gtools]; };
   hiertest = derive2 { name="hiertest"; version="1.1"; sha256="17maf1w4vkqknxff3f00fzv136j3dbbigyzl4vq4sln9j27w10r3"; depends=[]; };
   highD2pop = derive2 { name="highD2pop"; version="1.0"; sha256="1s4v6m2d3vzvxsgmjzczv1zj3kv3ygvv6gbkkbjwsdhkvc1rdmf0"; depends=[fastclime]; };
-  highSCREEN = derive2 { name="highSCREEN"; version="0.2"; sha256="0lgwxavshqd826g1zmjakhxlbngbhrc36nc8wsh9nakklx4nq9g4"; depends=[gplots]; };
+  highSCREEN = derive2 { name="highSCREEN"; version="0.3"; sha256="179l82n7l7dfn40k6zgigw56ggwqyi34gllc2wvcw3yvfnd3l7s4"; depends=[gplots]; };
   highTtest = derive2 { name="highTtest"; version="1.1"; sha256="18hgxlr0y8y1d4ldqmfcg4536lhyn5p6w88sq1vj74qr5wzydga1"; depends=[]; };
   highcharter = derive2 { name="highcharter"; version="0.5.0"; sha256="1myypff80mxcgc3j0sflalhqz344c2zz2p90aarli1pbys9v8ynp"; depends=[assertthat broom dplyr htmltools htmlwidgets igraph jsonlite lubridate magrittr purrr quantmod rlist stringr tibble tidyr xts zoo]; };
   highfrequency = derive2 { name="highfrequency"; version="0.5.3"; sha256="1d218504ghg8d3cwmsxwkznxpr2wy5li062i2lynbxzrhrk59i0l"; depends=[chron cubature MASS mvtnorm numDeriv robustbase sandwich timeDate xts zoo]; };
@@ -7325,12 +7648,13 @@ in with self; {
   highlightHTML = derive2 { name="highlightHTML"; version="0.2.1"; sha256="06k2idx9aadjd6xp6kadm9jh7ap1hwg7vh0bc8vw9ll82wcp1nv1"; depends=[]; };
   highmean = derive2 { name="highmean"; version="3.0"; sha256="1lq7z0l1737j4wvsy7951405afylyywp7vf2i7girzh459fdfzpc"; depends=[MASS mnormt mvtnorm]; };
   highr = derive2 { name="highr"; version="0.7"; sha256="1dzknqk4x7iiiq1jkh9bqm5qcvs7mbqxbkn5955050payavabfya"; depends=[]; };
-  highriskzone = derive2 { name="highriskzone"; version="1.4-2"; sha256="1q9y34nj73kg5y6qy4kb023vyzbdb0f6x23asq20bj5pmz2l25y1"; depends=[deldir fields ks Matrix mvtnorm rgeos spatstat]; };
+  highriskzone = derive2 { name="highriskzone"; version="1.4.5"; sha256="09ad025ydpfsrkcfqsfm4cj6lk8shrdh6vyya7isqwrd5jfyf1qc"; depends=[deldir fields ks maps Matrix mvtnorm rgeos spatstat]; };
   higrad = derive2 { name="higrad"; version="0.1.0"; sha256="0q9av8qyvmvgy6a3l7svcmbkjjgnp4iny1cld4g3qsbaz3yp3jaj"; depends=[Matrix]; };
   hillmakeR = derive2 { name="hillmakeR"; version="0.2"; sha256="1baynibgn4xqmpsxna8irggxvdc484mq5nza00rwg58vh1bc7wzq"; depends=[]; };
   hindexcalculator = derive2 { name="hindexcalculator"; version="1.0.0"; sha256="06b4dn629avmnyqxb0l39m00wz9cg9dddmm6qhgwgnzlxh14ifgk"; depends=[]; };
   hint = derive2 { name="hint"; version="0.1-1"; sha256="1n18j2hcb1qynhsln10nzryi20l5aqhr7i1aanww10y5dz573zi3"; depends=[]; };
-  hisse = derive2 { name="hisse"; version="1.8.5"; sha256="1lhxj0cz3sdidpafll64fg1797y0472yxcr21dp2b83qbygkwfgl"; depends=[ape data_table deSolve GenSA nloptr phytools subplex]; };
+  hipread = derive2 { name="hipread"; version="0.1.1"; sha256="1x3h52qjjv44ssifhz73xc55vv1wjrsmc021f9ida14m2dy3nwfv"; depends=[BH R6 Rcpp rlang tibble]; };
+  hisse = derive2 { name="hisse"; version="1.8.8"; sha256="1r389916gmcgmg6xjm4mmqf18k0p90wdlcifwv4qjdf2c39xqjwp"; depends=[ape data_table deSolve diversitree GenSA nloptr phytools plotrix subplex]; };
   histmdl = derive2 { name="histmdl"; version="0.7-1"; sha256="0k6l3pfjzlgpxv55vy8dg4sl8zhh0460xcfszwp2k9sbzanwaamp"; depends=[]; };
   histogram = derive2 { name="histogram"; version="0.0-24"; sha256="1jihw92zi5a4dj6lzm1qvkynv9fp6j5iy83g8rzikp276x63nb62"; depends=[]; };
   historydata = derive2 { name="historydata"; version="0.1"; sha256="1h69x3iig542d43p9zm8x83p4dq48iwsw606j4fndnqhx99vzkw6"; depends=[]; };
@@ -7349,7 +7673,7 @@ in with self; {
   hnp = derive2 { name="hnp"; version="1.2-6"; sha256="12cbc353ipr2rcc93skf1766g38j1pvpdkqk3cswv0cxsjl2x7pl"; depends=[MASS]; };
   hoa = derive2 { name="hoa"; version="2.1.4"; sha256="15klcpmja4afwmpfxrxgrfis0vj7fil8k15jc3p0lqz3dhvq0dvf"; depends=[statmod survival]; };
   hoardeR = derive2 { name="hoardeR"; version="0.9.2"; sha256="0sss3ki2w0aqyp084pprycw8d8vgm60z41iq6g9nxhqhr9xy5kdw"; depends=[bamsignals Biostrings data_table GenomicRanges GenomicTools httr IRanges MASS R_utils RCurl Rsamtools seqinr stringr XML]; };
-  hoardr = derive2 { name="hoardr"; version="0.2.0"; sha256="13bjycnr1v524c5wxigdd3kn8bx1sgwdqb10hbmbyjxffabacafr"; depends=[digest R6 rappdirs]; };
+  hoardr = derive2 { name="hoardr"; version="0.5.0"; sha256="15s0803cgh0gxxrz4ipicyzgy528sj6g9pc453cdcg079vd8dw12"; depends=[digest R6 rappdirs]; };
   hogsvdR = derive2 { name="hogsvdR"; version="0.1"; sha256="0ji4j9fzwnacdqbzrj5zphak5nsin7vcja15w48fik8hv5w6qs46"; depends=[MASS Rcpp RcppArmadillo]; };
   holdem = derive2 { name="holdem"; version="1.2"; sha256="0mcb4civ4p7apm7kfl88apvb4yznsmn4hggfggmjhs046g6bi2p7"; depends=[]; };
   homals = derive2 { name="homals"; version="1.0-8"; sha256="0gad0jmflw5zmzf9hk5qqmxxpbncm9gngsi24i3rgiz7565kli1r"; depends=[ape rgl scatterplot3d]; };
@@ -7369,10 +7693,12 @@ in with self; {
   housingData = derive2 { name="housingData"; version="0.3.0"; sha256="0ngfx2vjx705xixzpz0rgx1481cr2szj4yfi5g7ma1hhivddl7d1"; depends=[]; };
   howmany = derive2 { name="howmany"; version="0.3-1"; sha256="045ck8qahfg2swbgyf7dpl32ryq1m4sbalhr7m5qdgpm62vz8h7f"; depends=[]; };
   hpcwld = derive2 { name="hpcwld"; version="0.5"; sha256="17k4mw41gygwgvh7h78m0jgzh1bivrvrsr8lgxxw3sbkw88lwb40"; depends=[multicool partitions]; };
+  hpiR = derive2 { name="hpiR"; version="0.2.0"; sha256="0l9x0w6a3ssqcysw8bwmml541nags3b1wxbvipg4rqjfazpdxji4"; depends=[caret dplyr forecast ggplot2 gridExtra imputeTS knitr lubridate magrittr MASS plyr purrr rlang robustbase zoo]; };
   hpoPlot = derive2 { name="hpoPlot"; version="2.4"; sha256="176bf93gjwbi2z7nz81w4aycwax6f7jxvs3236zrmf0f0f4m7bkc"; depends=[functional magrittr Rgraphviz]; };
   hqmisc = derive2 { name="hqmisc"; version="0.1-1"; sha256="0jcy2hb3dmzf9j4n92aq7247mx9w7n30wpsx0dkchqnjwlqwwncw"; depends=[]; };
   hqreg = derive2 { name="hqreg"; version="1.4"; sha256="1j6zp3rmpjx409vm7kq159mlawg87wsq0ypdkan34yxxv9py2jmi"; depends=[]; };
-  hrbrthemes = derive2 { name="hrbrthemes"; version="0.5.0"; sha256="0bayblwwf4fwjc21c7zhdipvfxycfil4xkja0dirvvhk5zwszgnx"; depends=[extrafont ggplot2 htmltools knitr magrittr rmarkdown scales]; };
+  hrIPW = derive2 { name="hrIPW"; version="0.1.2"; sha256="0bgcz4v9cj3aajcp25bv4g7magj54n86qy5nmgr6kqm8sspy260x"; depends=[survival]; };
+  hrbrthemes = derive2 { name="hrbrthemes"; version="0.5.0.1"; sha256="14nqv809i5cdmbzdpvcppf2r1qsjv0f4lk5w6s4sjinaf68rzpzg"; depends=[extrafont ggplot2 htmltools knitr magrittr rmarkdown scales]; };
   hsdar = derive2 { name="hsdar"; version="0.7.1"; sha256="1bjcgkqhjcrysyh0l1w3r1zzmv3sdlb7xzxdc504z1viy1ayh6ly"; depends=[caret raster rgdal signal]; };
   hsicCCA = derive2 { name="hsicCCA"; version="1.0"; sha256="1d4lkjrihwhl3jrsj7250ccd90nfwpllyavc3mp15fhcy2jnjci8"; depends=[]; };
   hsm = derive2 { name="hsm"; version="0.2.0"; sha256="066shjikqrrkxpnra4zknax1a0sk5nx9ms1br58vwqqvqq479rym"; depends=[]; };
@@ -7384,8 +7710,8 @@ in with self; {
   htmltab = derive2 { name="htmltab"; version="0.7.1"; sha256="0lymagm7z6zn0ddygqxi831ikk74112lkqkbvs5j1djhmr359ajc"; depends=[httr XML]; };
   htmltidy = derive2 { name="htmltidy"; version="0.4.0"; sha256="090rj1fzdsa8m4g33d4mx92dm8afh173i4hqa4zym8c909jwh9qn"; depends=[htmltools htmlwidgets Rcpp XML xml2]; };
   htmltools = derive2 { name="htmltools"; version="0.3.6"; sha256="18k8r1s8sz1jy7dkz35n69wj20xhmllr53xmwb4pdzf2z61gpbs4"; depends=[digest Rcpp]; };
-  htmlwidgets = derive2 { name="htmlwidgets"; version="1.2"; sha256="04c4d0mfcy3dkdlbxnaccpdgxvyxfdwfmmh5djim6v9hyg0j2z8s"; depends=[htmltools jsonlite yaml]; };
-  htree = derive2 { name="htree"; version="1.0.0"; sha256="1yw29rk752g3sc50igcgnxfsp7ydcmrlwpacch5c8yjg5di06ymb"; depends=[]; };
+  htmlwidgets = derive2 { name="htmlwidgets"; version="1.3"; sha256="04jsdh14l2zifbjpbbh23w7bxz1wpsas0zb2gy2zwv4yqamzzr7i"; depends=[htmltools jsonlite yaml]; };
+  htree = derive2 { name="htree"; version="2.0.0"; sha256="15bi5c2p4aghihp3k12s78447j2x9hbsaq56b5lc8jmd1vf0jdwb"; depends=[]; };
   hts = derive2 { name="hts"; version="5.1.5"; sha256="0mvsxrk7wkfn81hbk8a80fckiqiwdbvhq42k7c6lm69gamnbak2f"; depends=[forecast Matrix matrixcalc Rcpp RcppEigen SparseM]; };
   httk = derive2 { name="httk"; version="1.8"; sha256="1snwqqvacxgl4cyadx5la87xh4kxiqpdmyq4szqz5r1aq2sxrr03"; depends=[data_table deSolve msm mvtnorm survey truncnorm]; };
   httpRequest = derive2 { name="httpRequest"; version="0.0.10"; sha256="0f6mksy38p9nklsr44ki7a79df1f28jwn2jfyb6f9kbjzh98746j"; depends=[]; };
@@ -7393,7 +7719,7 @@ in with self; {
   httpcode = derive2 { name="httpcode"; version="0.2.0"; sha256="06k853ihwzkcx4z3jzazpb03p91frqkwz18jy4fwr8j2nwyqbhgv"; depends=[]; };
   httping = derive2 { name="httping"; version="0.2.0"; sha256="0hdcf51yak8yagy4xj9cyck934lgmvpkd08jvlql33ir5mqvvv3i"; depends=[httpcode httr jsonlite magrittr pryr]; };
   httptest = derive2 { name="httptest"; version="3.1.0"; sha256="1r0grzlblyri526a3pp2n8v9zf23kf41i6kl64qmkrq1bamr0m17"; depends=[digest httr jsonlite testthat]; };
-  httpuv = derive2 { name="httpuv"; version="1.4.4.2"; sha256="03lc8j98c6fx9g431is0q5zm4y4phjg99h7w6y6c38cjg7kphr72"; depends=[BH later promises Rcpp]; };
+  httpuv = derive2 { name="httpuv"; version="1.4.5"; sha256="1ddpcarzf694h0gy5pdz7l5glqfv4hr9dmxb4vw7yqd0bga174gi"; depends=[BH later promises Rcpp]; };
   httr = derive2 { name="httr"; version="1.3.1"; sha256="0n7jz2digbgv48rbr9vmzv4vmf4rahl9jjy31izs7sxj4rs4s4r2"; depends=[curl jsonlite mime openssl R6]; };
   hues = derive2 { name="hues"; version="0.1"; sha256="0b6y4ld242fqzx4ccxzk4i4zbx7myk7v3a03r0klgbh2mmw3ixm0"; depends=[colorspace]; };
   huge = derive2 { name="huge"; version="1.2.7"; sha256="134d951x42vy9dcmf155fbvik2934nh6qm2w5jlx3x2c6cf7faq4"; depends=[igraph lattice MASS Matrix]; };
@@ -7405,11 +7731,11 @@ in with self; {
   hunspell = derive2 { name="hunspell"; version="2.9"; sha256="10186544s6nyd2ba470idxrxsl788dkmr1g1ri8x2n1lky9zmrik"; depends=[digest Rcpp]; };
   hurdlr = derive2 { name="hurdlr"; version="0.1"; sha256="1ryrqsxa07isxv2zx156bcn36d4yjvwpirb8jqcmqm97q7rmihmq"; depends=[]; };
   hurricaneexposure = derive2 { name="hurricaneexposure"; version="0.0.1"; sha256="1j6srqnmdhmg1yg06nqxapdrd9p3yrfs01z0sk43dvjq4dmwmrjr"; depends=[data_table dplyr ggmap ggplot2 lazyeval lubridate maps purrr RColorBrewer stringr tidyr]; };
-  hutils = derive2 { name="hutils"; version="1.1.0"; sha256="05vywa9lgnpvrkly5mbc4wlxc5v7cz58zgm6wynbxpc58m6smi73"; depends=[data_table fastmatch magrittr]; };
-  huxtable = derive2 { name="huxtable"; version="4.0.1"; sha256="1z93py9nnfpvqkackgxvr2pnd642zcvqks9x01m4nh6dsbh52bs7"; depends=[assertthat dplyr glue htmltools knitr rmarkdown stringr tibble tidyselect]; };
+  hutils = derive2 { name="hutils"; version="1.2.0"; sha256="0yfy5mydy0il7jlm2ddn2cmja5advshazxjrfa5kgqpc4aqx0avs"; depends=[data_table fastmatch magrittr]; };
+  huxtable = derive2 { name="huxtable"; version="4.2.1"; sha256="1x6w773jaxj8d2ijdpd15lci7z8i8hhc1ch9af5vb9ysps4p07j6"; depends=[assertthat glue memoise stringr tibble tidyselect]; };
   hwde = derive2 { name="hwde"; version="0.67"; sha256="0wb2f9i5qi7w77ygh8bvydfpr7j5x8dyvnnhdkajaz0wdcpkyaqy"; depends=[]; };
   hwriter = derive2 { name="hwriter"; version="1.3.2"; sha256="0arjsz854rfkfqhgvpqbm9lfni97dcjs66isdsfvwfd2wz932dbb"; depends=[]; };
-  hwwntest = derive2 { name="hwwntest"; version="1.3"; sha256="1b5wfbiwc542vlmn0l2aka75ss1673z8bcszfrlibg9wwqjxlwk5"; depends=[polynom wavethresh]; };
+  hwwntest = derive2 { name="hwwntest"; version="1.3.1"; sha256="1mz5svx5vbisdl5wxdnwip13pq4slyigc7j52l526rr9n0l0pr5v"; depends=[polynom wavethresh]; };
   hybridEnsemble = derive2 { name="hybridEnsemble"; version="1.0.0"; sha256="08y11cmlhnl456wxsvh3ll1f9ywkmgqjwlwr3v3qhm54nlanwvkr"; depends=[ada AUC e1071 FNN genalg GenSA glmnet kernelFactory NMOF nnet nnls pso quadprog randomForest reportr Rmalschains ROCR rotationForest rpart soma tabuSearch]; };
   hybridHclust = derive2 { name="hybridHclust"; version="1.0-5"; sha256="0w06vna66hlmvx10dl1l0nzbnxkd634gxjz26w015f83vpmfc5vz"; depends=[cluster]; };
   hybridModels = derive2 { name="hybridModels"; version="0.3.5"; sha256="0bg065j3y3xwxlib9i78pa0ghlblyp4qq1kmh3j02w8xi00rnrs6"; depends=[doParallel foreach ggplot2 GillespieSSA reshape2 stringr]; };
@@ -7419,19 +7745,19 @@ in with self; {
   hydroTSM = derive2 { name="hydroTSM"; version="0.5-1"; sha256="053id9ldr10mafww3vas9fiy16lz0n1mqqfg6wjsbm5r15jkz3ha"; depends=[automap e1071 gstat lattice maptools sp xts zoo]; };
   hydrogeo = derive2 { name="hydrogeo"; version="0.6-1"; sha256="16m6yvr9yhvb0vdh9pqd6gzf3h9km7gd89y6risjddv6g83469k8"; depends=[]; };
   hydrolinks = derive2 { name="hydrolinks"; version="0.10.0"; sha256="0004a03bx9l9wq6zdz5az41rjxv1ka4qmnxk6ksy8i7365wsay88"; depends=[dbplyr dplyr httr rappdirs RSQLite sf units]; };
-  hydroscoper = derive2 { name="hydroscoper"; version="1.0.0"; sha256="09dcn2wfd06waxzq8cv8lxyw07kavjp30qc2czn2gamrak8xvrl9"; depends=[jsonlite pingr plyr readr stringi stringr tibble]; };
+  hydroscoper = derive2 { name="hydroscoper"; version="1.1.1"; sha256="0fykbn3ri9ypyxcrsbwi5pmyzbfp5dvrzg4klhjp0f88yfz80nbm"; depends=[jsonlite pingr plyr readr stringi stringr tibble]; };
   hydrostats = derive2 { name="hydrostats"; version="0.2.5"; sha256="1n0wy8i1cfsgmqh898qi0qnqn4qx1srjvd05vmsf9qmhpnnyqw5m"; depends=[]; };
-  hyfo = derive2 { name="hyfo"; version="1.3.9"; sha256="03f3irmhndwfnv4i121gwxb2yv1868pggzyr80pgp4969qzddacm"; depends=[data_table ggplot2 lmom maps maptools MASS moments ncdf4 plyr reshape2 rgdal rgeos zoo]; };
+  hyfo = derive2 { name="hyfo"; version="1.4.0"; sha256="03xd4nm8zmc8gw8rml8svfim64xcslvpmdcldlri9cf89s8v35br"; depends=[data_table ggplot2 lmom maps maptools MASS moments ncdf4 plyr reshape2 rgdal rgeos zoo]; };
   hyper_fit = derive2 { name="hyper.fit"; version="1.0.3"; sha256="17f5i2i960796hl92y7ci9ffspway435r02kw1zk91lvfn927hng"; depends=[LaplacesDemon magicaxis MASS rgl]; };
-  hyper2 = derive2 { name="hyper2"; version="1.0-1"; sha256="107cp6na0srqax42fmvcsrviy631hg6phqmkc0cxz1zdxxxw6442"; depends=[partitions Rcpp]; };
+  hyper2 = derive2 { name="hyper2"; version="1.0-4"; sha256="00999k891s5l2wcnn6ych1v60ckqd2qxyckrfxh4kxnq9891hqcx"; depends=[magrittr partitions Rcpp]; };
   hyperSMURF = derive2 { name="hyperSMURF"; version="2.0"; sha256="1aczsph6ax5xfd5rfvsd9bmgaq3j2f5f82fx8whrgbin0hxz19d8"; depends=[randomForest unbalanced]; };
   hyperSpec = derive2 { name="hyperSpec"; version="0.99-20180627"; sha256="12bgp3nm9mwi5w3v8a9fnm4a2cxid3la0r3sxs10azikn5yw0ib5"; depends=[ggplot2 lattice latticeExtra lazyeval testthat XML]; };
   hypercube = derive2 { name="hypercube"; version="0.1.0"; sha256="0iv3cfs636mwijm2rjk427izf0gk5lh2fknd7bmb8pd188ckwqmf"; depends=[stringr]; };
-  hypergate = derive2 { name="hypergate"; version="0.7"; sha256="02i8aywpdp0daxqrqnxfp2xk60jby268c064lcbggjb9nbm04q0m"; depends=[lattice]; };
+  hypergate = derive2 { name="hypergate"; version="0.8"; sha256="0kfw5k8p3scyxc41ylc14bpny14ynbn9l0fjg6bgmgxqsss54d7h"; depends=[]; };
   hypergea = derive2 { name="hypergea"; version="1.3.6"; sha256="1k1525bkkj83j2nn9ixidb8vjvdmc4l9jvfarzgg532gg7wn3841"; depends=[]; };
   hypergeo = derive2 { name="hypergeo"; version="1.2-13"; sha256="13jdiy216znwhr91iqnh03mvkmyscw439syb3h4i67dd78sphnvd"; depends=[contfrac deSolve elliptic]; };
   hypersampleplan = derive2 { name="hypersampleplan"; version="0.1.1"; sha256="1sk3s1jm46ac4i7p433s3kyngj86kq2821zzhp30a3y8vi1j2psq"; depends=[]; };
-  hypervolume = derive2 { name="hypervolume"; version="2.0.10"; sha256="16q2h42c2q4b6hq5h6lkxgwizdln1nbq1l7n5f226zjlfrvgk8fx"; depends=[data_table e1071 fastcluster geometry hitandrun ks maps MASS mvtnorm pdist progress raster Rcpp RcppArmadillo rgeos rgl sp]; };
+  hypervolume = derive2 { name="hypervolume"; version="2.0.11"; sha256="1lfxsqvkzych9zvknxf4fnsfav9kv8cjss0pr4ny1wbmbvdxbbqc"; depends=[data_table e1071 fastcluster geometry hitandrun ks maps MASS mvtnorm pdist progress raster Rcpp RcppArmadillo rgeos rgl sp]; };
   hyphenatr = derive2 { name="hyphenatr"; version="0.3.0"; sha256="0mv77njy0ha7bj3kw620fk9r8cdzqd0v3ipikihqxq47fr57ml0v"; depends=[Rcpp stringi]; };
   hypothesestest = derive2 { name="hypothesestest"; version="1.0"; sha256="0g8sm386m1zm9i3900r62x83wb600cy8hqk7dlvbx6wcgrxg82sm"; depends=[]; };
   hypothesisr = derive2 { name="hypothesisr"; version="0.1.1"; sha256="0z06risagphhvqiw4lrxy52q6q2yr10w2yxsm8iz1wh9ik097pcv"; depends=[dplyr httr jsonlite]; };
@@ -7439,8 +7765,8 @@ in with self; {
   hzar = derive2 { name="hzar"; version="0.2-5"; sha256="000l4ki3hvznnhkxc5j422h5ifnsfqalv666j48yby1hsf1lc3kg"; depends=[coda foreach MCMCpack]; };
   iBATCGH = derive2 { name="iBATCGH"; version="1.3"; sha256="0pnkkabzi57czcwd9i15nwv8ggwvyxmvn1wam7yrrrbvmi17lmrm"; depends=[msm Rcpp RcppArmadillo]; };
   iBST = derive2 { name="iBST"; version="1.0"; sha256="02p7lcr1wrf21v4568jc8hmjcijy3fnbv77s8nlhv2s4p0pgzh5x"; depends=[Rcpp rpart survival]; };
-  iC10 = derive2 { name="iC10"; version="1.1.3"; sha256="19dlrwj47zmdgmvzjfs5qa9fqq8g9ywhgy5mqbp99n7d9hg4ybxh"; depends=[iC10TrainingData pamr]; };
-  iC10TrainingData = derive2 { name="iC10TrainingData"; version="1.0.1"; sha256="1x1kgxiib9l7whm2kmbv1s912hgpl7rdpqpn67nlkiswnr27hqn4"; depends=[]; };
+  iC10 = derive2 { name="iC10"; version="1.4.2"; sha256="0p7xqshybfqm3basvph7x718yppk4kbg8agpvpq0kmkq5db5n1w6"; depends=[iC10TrainingData pamr]; };
+  iC10TrainingData = derive2 { name="iC10TrainingData"; version="1.3.1"; sha256="175ymib3h359296hk36psryksisipx63ybvacz8hys21irzx58j1"; depends=[]; };
   iClick = derive2 { name="iClick"; version="1.4"; sha256="1j1mk4w1m90f90ijxdiw67sycxms4mqljcmsic81m2pq228l8zd5"; depends=[boot car coefplot fBasics forecast lattice lmtest lubridate openair papeR rugarch sandwich timeDate timeSeries xts zoo]; };
   iCluster = derive2 { name="iCluster"; version="2.1.0"; sha256="09j36xv87d382m5ijkhmp2mxaajc4k97cf9k1hb11ksk7fxdqz6r"; depends=[caTools gdata gplots gtools lattice]; };
   iDINGO = derive2 { name="iDINGO"; version="1.0.2"; sha256="041yvp3nzk3ipjlx17xcn9yiwr1hlns0pd3vzqrck5v9glnp4sbr"; depends=[GGMridge glasso igraph mvtnorm scales visNetwork]; };
@@ -7451,8 +7777,8 @@ in with self; {
   iGSEA = derive2 { name="iGSEA"; version="1.2"; sha256="1xlz8mbxqnrwyqj7jwma7vmvjlaccajbfxf3hi4wp5qs2pch8806"; depends=[]; };
   iGasso = derive2 { name="iGasso"; version="1.4"; sha256="17xxqncl5xcphdqclghcazygcgibf8ijdf4kkl3ga11xf70sahj2"; depends=[CompQuadForm lattice]; };
   iMRMC = derive2 { name="iMRMC"; version="1.1.0"; sha256="04wpqdds5vfqvl8n5g64vnyh4a40dxjh8l1bgw1vdz1372n0421g"; depends=[]; };
-  iMediate = derive2 { name="iMediate"; version="0.4"; sha256="0pwvzd0k9m2jd7sizl436vs63rg9yinisrb0flz34yj5avn6rmb0"; depends=[mediation mvtnorm plotly]; };
-  iNEXT = derive2 { name="iNEXT"; version="2.0.12"; sha256="1041r5k0k3kzik5vwyd62s4yc85lnnxbg5gbbl0kl629kikymb6y"; depends=[ggplot2 reshape2]; };
+  iMediate = derive2 { name="iMediate"; version="0.5"; sha256="0gr0nibfdmiyxz8n7pfcl1d2gxhl5g2pi9yhnmsvqzry4j3x27yw"; depends=[mvtnorm plotly]; };
+  iNEXT = derive2 { name="iNEXT"; version="2.0.17"; sha256="1gg9zzcfjn70scz9kmn37rvz3lnbkbd4a59xmfy56x9xgs3wrxwp"; depends=[ggplot2 reshape2]; };
   iNOTE = derive2 { name="iNOTE"; version="1.0"; sha256="1969xmgfv9405r09zpd2icvjd9vvzw4dx5qaqxk1a0jvbvhp3h88"; depends=[CompQuadForm mixtools plyr]; };
   iNextPD = derive2 { name="iNextPD"; version="0.3.2"; sha256="06wka2qr1jm3hvi8j0b19fr21v72gmqknz8dg0l5wl91m0prqns3"; depends=[ade4 ggplot2 iNEXT Rcpp]; };
   iRF = derive2 { name="iRF"; version="2.0.0"; sha256="1ll4lxg743p2zipxcq13yjsc7j7dk766dcyixwxilllbisg0dh8y"; depends=[AUC data_table doParallel dplyr foreach Matrix RColorBrewer Rcpp]; };
@@ -7465,7 +7791,7 @@ in with self; {
   iWISA = derive2 { name="iWISA"; version="1.0-2"; sha256="0jqi1kh7jlc04nb9d1w711q4i8j1vgwbxjls09z7853kv22wxfyz"; depends=[fda ggplot2 waveslim]; };
   iWeigReg = derive2 { name="iWeigReg"; version="1.0"; sha256="09ajbqllr4ajmpk8qs6qw019fx8a7vsabm37867zycssn77z9nc8"; depends=[MASS trust]; };
   iadf = derive2 { name="iadf"; version="0.1.0"; sha256="02zx9n4ncg10bbydrr05631vzc4w2b1jg3x6xiaffg7x5rh4mnyf"; depends=[dplR dplyr manipulate rlang tibble tidyr]; };
-  ibd = derive2 { name="ibd"; version="1.3"; sha256="0a94vn5awn425qw99y8y38xivgzq16s3yvpkgld54p7jwhvmgxln"; depends=[car emmeans lpSolve MASS multcompView]; };
+  ibd = derive2 { name="ibd"; version="1.4"; sha256="1755zbsy7ym5xpnma1r2hdii11p42765k8xxf3dfv6mbhxiyzpbq"; depends=[car emmeans lpSolve MASS multcompView]; };
   ibdreg = derive2 { name="ibdreg"; version="0.2.5"; sha256="1kaa5q1byi30wzr0mw4w2cv1ssxprzcwf91wrpqwkgcsdy7dkh2g"; depends=[]; };
   ibeemd = derive2 { name="ibeemd"; version="1.0.1"; sha256="115z13q02gzixziknix2l53mi12zzg30ra9h35pv6qzrr11ra1ic"; depends=[deldir fields rgeos sp spdep]; };
   ibelief = derive2 { name="ibelief"; version="1.2"; sha256="1zh6bpg0gaybslr1p05qd5p2y5kxbgyhgha4j4v5d69d78jwgah9"; depends=[]; };
@@ -7481,32 +7807,32 @@ in with self; {
   icapca = derive2 { name="icapca"; version="1.1"; sha256="131gdrk8vsbac0krmsryvsp21bn9hzxqxq847zn16cxjf6y5i3xb"; depends=[]; };
   icarus = derive2 { name="icarus"; version="0.3.0"; sha256="1656bz0av59dpgndibn0bc5zr9zka9pmw7qmhjz2b956bh7sh4ag"; depends=[]; };
   iccbeta = derive2 { name="iccbeta"; version="1.1.0"; sha256="1xw0mz3ipkfz1jsjzwjnrm0af1gs31js7nvgy79cxqz31955zjww"; depends=[Rcpp RcppArmadillo]; };
-  icd = derive2 { name="icd"; version="3.2.0"; sha256="0wd5d9zlhy9wh3phy4mz8zg0jv08hjizvlscaj208a64lwkzvq7g"; depends=[checkmate icd_data magrittr Rcpp RcppEigen testthat]; };
+  icd = derive2 { name="icd"; version="3.2.1"; sha256="0knhiy18jckdyxvhp80hif1wnfg6r8fvl7h6ixb0q3lgqdc79749"; depends=[checkmate icd_data magrittr Rcpp RcppEigen testthat]; };
   icd_data = derive2 { name="icd.data"; version="1.0"; sha256="0cynr9327wfg88661w4hali48mb6ghyvlqgybsa38k9bbf57v8aa"; depends=[]; };
   icdGLM = derive2 { name="icdGLM"; version="1.0.0"; sha256="1mh9kwn21n19v4lrmj33ghpna7dl66fx19gi6lcjanmrpzrkwdnz"; depends=[Matrix]; };
-  icenReg = derive2 { name="icenReg"; version="2.0.7"; sha256="1fc6l3mqnm4rcg49bk2plfa011g7nay71gzd4nxnjisifmw6qi2s"; depends=[coda foreach MLEcens Rcpp RcppEigen survival]; };
+  icenReg = derive2 { name="icenReg"; version="2.0.9"; sha256="0jfizdahdnvq6a476j25acvahrh68anihimk26nl98sad1gf9zzk"; depends=[coda foreach MLEcens Rcpp RcppEigen survival]; };
   icensBKL = derive2 { name="icensBKL"; version="1.1"; sha256="12zx5x81jy48mp0l6a5ga0ikkjxvndv5cv2xf6d2lczfk7fz9lbp"; depends=[gtools Icens MASS mvtnorm smoothSurv survival TeachingDemos]; };
   icensmis = derive2 { name="icensmis"; version="1.3.1"; sha256="1c0j43wffb5h99chlj8j45lpan7dpn2i0r4rr6b2kq16p1zabfjw"; depends=[Rcpp]; };
   icesAdvice = derive2 { name="icesAdvice"; version="1.4-2"; sha256="10f1ss949gi7s5fhfbygqaf05pshalw6sa266v4gnxqwqynf4qbj"; depends=[]; };
   icesDatras = derive2 { name="icesDatras"; version="1.2-0"; sha256="0arkn9ma03qb21sv5chmz5fj65da5ivqhvrg8bqibbky8zkix1vh"; depends=[]; };
   icesSAG = derive2 { name="icesSAG"; version="1.3-4"; sha256="1s330691an1m5h1i342ls6igqcqrlrwyhapa82x5h2krdia0nmnp"; depends=[httr icesVocab openssl png xml2]; };
-  icesTAF = derive2 { name="icesTAF"; version="1.6-1"; sha256="0fsc79id8mcdp53xsrhzy43mvhginr3sixqhsxwvcz497kwdyj4a"; depends=[]; };
+  icesTAF = derive2 { name="icesTAF"; version="1.6-2"; sha256="1r8dsc3dm6ziscgl7xr84b07myflwkdnpqjf0wjd3d0h5x8xdkdh"; depends=[]; };
   icesVocab = derive2 { name="icesVocab"; version="1.1-2"; sha256="15ha2visv44pphkahg766afafh6467lwznvppwkvqjrbfiijkc6l"; depends=[XML]; };
   icmm = derive2 { name="icmm"; version="1.1"; sha256="1w9f1rniz67rrvq0akc64s5433ddmr2cgbcljil4c58yyz8hinx8"; depends=[EbayesThresh]; };
   icosa = derive2 { name="icosa"; version="0.9.81"; sha256="05gpiksncdi536f4py7szfi6myny1gqj8i0hsgpma7cfcm3npn0l"; depends=[igraph raster Rcpp rgdal rgl sp]; };
   icpsrdata = derive2 { name="icpsrdata"; version="0.3.0"; sha256="17sprbbi8fmvcp8d7hwrxl5amg0j036wq483cw62zbmni3p3fl82"; depends=[httr purrr rvest]; };
-  icr = derive2 { name="icr"; version="0.5.4"; sha256="0vm2k2pjsnikb80crzhxs1wpxpjjigyny5ldini6sxg3lwhc14l3"; depends=[ggplot2 Rcpp tidyr]; };
+  icr = derive2 { name="icr"; version="0.5.8"; sha256="1grakn7c7slm2msdm8r059ky0s77apl80xhy65isxwj7ica64i9k"; depends=[ggplot2 Rcpp]; };
   icsw = derive2 { name="icsw"; version="1.0.0"; sha256="0g7bcqs0rpbs1p202i9wjbl8hhy3r196zambm044xyf7kvsbzzf6"; depends=[]; };
   idar = derive2 { name="idar"; version="1.0"; sha256="1yfv3na4rcldkpzybf7la227z4ynsl1scrziirl5gp072k7zrs01"; depends=[ape FD picante spatstat]; };
   idbg = derive2 { name="idbg"; version="1.0"; sha256="1rxmj04hswxybrg7dfib3mjy8v8mdiv13zwbscp2q55z55hhf1m5"; depends=[]; };
   idbr = derive2 { name="idbr"; version="0.3"; sha256="02syk7fmif0xnddl8189vnl329r8mwl3iwv2rsf6cw7mwg30fhyw"; depends=[countrycode dplyr httr jsonlite]; };
   idealstan = derive2 { name="idealstan"; version="0.2.7"; sha256="1818vwlv5cr6qyg7p6kgyb996n89d2xr4cy6ys9pdhrp7lip9prr"; depends=[bayesplot BH dplyr ggplot2 lazyeval Rcpp RcppEigen rlang rstan rstantools shinystan StanHeaders stringr tidyr]; };
-  idefix = derive2 { name="idefix"; version="0.2.4"; sha256="0j64pmccg01lscvjg9z97ypv3svl4jbvs4819jn4kc9ni6gq4fai"; depends=[dplyr gtools MASS maxLik Rdpack scales shiny]; };
+  idefix = derive2 { name="idefix"; version="0.3.1"; sha256="18anykh7y8437ivjyc43x2fwkqni082w2aahmq3ml6i9f21w48ci"; depends=[dplyr gtools MASS maxLik mlogit Rcpp RcppArmadillo Rdpack scales shiny tmvtnorm]; };
   idem = derive2 { name="idem"; version="3.5"; sha256="1fr456drfnla917byw0c8ppqrhq4i7gsd4idfasx6xx5fqhv7ypc"; depends=[BH Rcpp RcppEigen rstan sqldf StanHeaders survival]; };
   idendr0 = derive2 { name="idendr0"; version="1.5.3"; sha256="11c12d166bp2i498d8y6ipg5jhz1xsdsrmnhjqnrqqzp9avvrsjp"; depends=[tkrplot]; };
   identity = derive2 { name="identity"; version="0.2-1"; sha256="1j5wb5cj5j49in2g6r1shdm4ri4cfzj22hpqazvcmq4dm291sdi9"; depends=[]; };
   ider = derive2 { name="ider"; version="0.1.0"; sha256="021s4fybki7a6mdsr6gkjrzfhaqdcg0m2a6r24y91jklxlxqxmws"; depends=[FNN]; };
-  idm = derive2 { name="idm"; version="1.8.1"; sha256="14cy1gv12wjpsv5jih7pgq5d36gfpdc56ih4mc6hx638qkkyk87z"; depends=[animation ca corpcor dummies ggplot2 ggrepel]; };
+  idm = derive2 { name="idm"; version="1.8.2"; sha256="04f0i0kwdxywmj2i184knx5a5v9svx0lbam6wpz49hghg7qpy0w5"; depends=[animation ca corpcor dummies ggplot2 ggrepel]; };
   idmTPreg = derive2 { name="idmTPreg"; version="1.1"; sha256="1329sjb4dnw3yiyg16whbj4l2v0kg8phg1x4ysvyp2kqkmw14yq6"; depends=[doParallel foreach survival]; };
   idr = derive2 { name="idr"; version="1.2"; sha256="05nvgw1xdg670bsjjrxkgd1mrdkciccpw4krn0zcgdf2r21dzgwb"; depends=[]; };
   ids = derive2 { name="ids"; version="1.0.1"; sha256="1s6ga94gds5ydr9f8qbjfgfpg2dvbnkcrlybqlb33hk3c0c2l8dn"; depends=[openssl uuid]; };
@@ -7522,42 +7848,44 @@ in with self; {
   ifs = derive2 { name="ifs"; version="0.1.5"; sha256="03g9cgs0zp89b1d7rpcn5clkvmg0spnariwrifd8hha476ldvfcy"; depends=[]; };
   ifultools = derive2 { name="ifultools"; version="2.0-4"; sha256="0pv2msaa1rmj8csxdclzi2jwg9pfdvh87blj9j3xa3myisglq092"; depends=[MASS splus2R]; };
   ig_vancouver_2014_topcolour = derive2 { name="ig.vancouver.2014.topcolour"; version="0.1.2.0"; sha256="0yclvm6xppf4w1qf25nf82hg1pliah68z7h3f683svv0j62q748h"; depends=[]; };
-  igraph = derive2 { name="igraph"; version="1.2.1"; sha256="1hcr6b1lz030lgay1bz8y8sxaf2j93ds8n8gsqr6qhssz141hd2m"; depends=[magrittr Matrix pkgconfig]; };
+  igraph = derive2 { name="igraph"; version="1.2.2"; sha256="1bggm7b8v3bh7q2589w26qvd7sgs69m4qiij7d0rbm0ykkgxm8lx"; depends=[magrittr Matrix pkgconfig]; };
   igraphdata = derive2 { name="igraphdata"; version="1.0.1"; sha256="19w5npa4b8c054v94xlr7nmhhg2fhq4m8jbds86skp8zvipl4rkl"; depends=[]; };
   igraphinshiny = derive2 { name="igraphinshiny"; version="0.1"; sha256="1ww5s4jfihzcx4k35lbhzsf54z720xh7b2p5alzk843m6rx77986"; depends=[igraph shiny]; };
   igraphtosonia = derive2 { name="igraphtosonia"; version="1.0"; sha256="0vy9jnpjp68l8s0hi1l57j9p41c543h3iqv16pwl550f38zqp8j6"; depends=[igraph]; };
   iheatmapr = derive2 { name="iheatmapr"; version="0.4.3"; sha256="0124d7h8n83zb5kvvavccprlqknpqrd634zv7sz9s915xzhp7jgz"; depends=[fastcluster ggdendro htmlwidgets jsonlite knitr magrittr plyr RColorBrewer S4Vectors scales]; };
   ihs = derive2 { name="ihs"; version="1.0"; sha256="1c5c9l6kdalympb19nlgz1r9zq17575ivp3zrayb9p6w3fn2i06h"; depends=[maxLik]; };
   iilasso = derive2 { name="iilasso"; version="0.0.2"; sha256="043m1n5840459zsknkb54801apb0a2cqfprncmj2wp235rbqj832"; depends=[BH Matrix Rcpp]; };
-  ijtiff = derive2 { name="ijtiff"; version="1.1.0"; sha256="0hb201qcwynbdi2fzspvv9sdhyx0cypbsvhawhcwj5zqdp6f507f"; depends=[checkmate fields filesstrings magrittr purrr Rcpp readr rlang stringr]; };
+  ijtiff = derive2 { name="ijtiff"; version="1.4.2"; sha256="1wqh8cwcpzfnkcm2ljabbkfaddmd9dxvaqsc3vp1ivnmq426fh99"; depends=[BBmisc checkmate dplyr fields filesstrings glue magrittr purrr Rcpp readr rlang stringr]; };
   iki_dataclim = derive2 { name="iki.dataclim"; version="1.0"; sha256="1yhvgr8d3j2r8y9c02rzcg80bz4cx58kzybm4rch78m0207wqs7p"; depends=[climdex_pcic lubridate PCICt zoo]; };
   ilc = derive2 { name="ilc"; version="1.0"; sha256="0hs0nxv7cd300mfxscgvcjag9f2igispcskfknb7sn7p8qvwr5ki"; depends=[date demography forecast rainbow survival]; };
   imageData = derive2 { name="imageData"; version="0.1-50"; sha256="0i56sksyxa50bhp3pimgag2bg37y1gfadky6i0xgg484wf1xw148"; depends=[dae GGally ggplot2 Hmisc RColorBrewer reshape XLConnect]; };
   imager = derive2 { name="imager"; version="0.41.1"; sha256="0ja8pi8l44llq75af4y8blb6vby43ikmy87sx83i1i327zfjzd5g"; depends=[Cairo downloader igraph jpeg magrittr plyr png purrr Rcpp readbitmap stringr]; };
-  imagerExtra = derive2 { name="imagerExtra"; version="1.1.1"; sha256="02ws4l52a3jrgqmn76p6p54mnb0ypvkd39yj8pqn8qg8l44fp3nw"; depends=[dtt imager magrittr Rcpp]; };
+  imagerExtra = derive2 { name="imagerExtra"; version="1.2.0"; sha256="1r94zcnfvd92qqls76ma3vgc8bnhah5jlminnbp9knr0jar8r0xp"; depends=[fftwtools imager magrittr Rcpp tesseract]; };
   imaginator = derive2 { name="imaginator"; version="0.1.1"; sha256="1xp5wsv570f1qy2fn99d8ijydmlapb6h6kinj07pilvv215dg93w"; depends=[assertthat dplyr lubridate magrittr stringi]; };
   imagine = derive2 { name="imagine"; version="1.4.0"; sha256="1v0rds64i0f3xgg7ca14ncw4nrcc80gvjf1fbp498idq38z79qzc"; depends=[Rcpp]; };
   imbalance = derive2 { name="imbalance"; version="1.0.0"; sha256="1pfhwf4844m0a8qsm852am63x18vlkbs6m1s9izrpd219616skpr"; depends=[bnlearn C50 FNN ggplot2 KernelKnn mvtnorm Rcpp RcppArmadillo smotefamily]; };
   imdbapi = derive2 { name="imdbapi"; version="0.1.0"; sha256="11v7c0s7qqf02b186md5lhgkgmywkn8lmmanlz3gfcxca26g047y"; depends=[dplyr httr stringr]; };
   imfr = derive2 { name="imfr"; version="0.1.5"; sha256="1f4zynra79h42dmd9qhg67wwvs7c640f5is98bq30fdphiybihgz"; depends=[dplyr httr jsonlite]; };
   imguR = derive2 { name="imguR"; version="1.0.3"; sha256="14f7ghgc8rbrpqb21rinfbrj1wh80i6ii0awwi814152v5qzj4b3"; depends=[httr jpeg png]; };
-  iml = derive2 { name="iml"; version="0.5.1"; sha256="043n14samxl85by7vihrc7nv45kaj287m0ab04fssvfn8rnprqlh"; depends=[checkmate data_table ggplot2 glmnet Metrics partykit R6]; };
+  iml = derive2 { name="iml"; version="0.7.1"; sha256="1wiylfd83p4wzccp0r3ydxy14zvw81q368h61gimrcm7110fdpx9"; depends=[checkmate data_table foreach ggplot2 glmnet Metrics partykit R6 yaImpute]; };
   immer = derive2 { name="immer"; version="1.0-138"; sha256="0jpjrvr3mpgqfyl56i95grb3jmrzzs00ciafsw9rd7fpbxnskkjf"; depends=[CDM coda MASS psychotools Rcpp RcppArmadillo sirt TAM]; };
-  imp4p = derive2 { name="imp4p"; version="0.6"; sha256="1aaj62ia87khkdkw6lx59dcx3lq1clfdzw7gbi0ffy99lp608q6s"; depends=[imputeLCMD Iso Rcpp truncnorm]; };
+  imp4p = derive2 { name="imp4p"; version="0.7"; sha256="1hpxx1jpwd4v19xnpjjbwcvfzvb63jfd0jq3vcq000w7am9pwwba"; depends=[Iso norm Rcpp truncnorm]; };
+  impimp = derive2 { name="impimp"; version="0.2.0"; sha256="0qaf7spcgjvg8s8nm4b535gx63vp6fy7r084xfxd94ygr8vb3lww"; depends=[]; };
   implyr = derive2 { name="implyr"; version="0.2.4"; sha256="1xc5c8wpq1bdvfm4rkqmvykgkil9fm9n1q9ndjv701jbdr4rnisd"; depends=[assertthat DBI dbplyr dplyr rlang tidyselect]; };
   r_import = derive2 { name="r_import"; version="1.1.0"; sha256="0blf9539rbfwcmw8zsb4k58slb4pdnc075v34vmyjw752fznhcji"; depends=[]; };
   importar = derive2 { name="importar"; version="0.1.1"; sha256="0xv445fmjhsbdlsq03k2rlycnggn3rcyq5a49zrg4jvjamzr0rgr"; depends=[]; };
   imprProbEst = derive2 { name="imprProbEst"; version="1.0.1"; sha256="09y8yd9sw0b79ca45ryi7p82vy5s8cx0gg603rlc39lgwcdv45i3"; depends=[inline lpSolve]; };
+  imptree = derive2 { name="imptree"; version="0.5.1"; sha256="0f087000092ydnpj3ch4mbip8wp32scn8xw4vlkq5lf6130gfs1b"; depends=[Rcpp]; };
   imputeLCMD = derive2 { name="imputeLCMD"; version="2.0"; sha256="10v3iv1iw6mnss6ry836crq9zdgid2y1h3pvigzjsrmnp5n89mfz"; depends=[impute norm pcaMethods tmvtnorm]; };
   imputeMDR = derive2 { name="imputeMDR"; version="1.1.2"; sha256="0ds5a4wav9vb9z5nji8hv5l76310rd970xf702fd0ckx1sh6rgd7"; depends=[]; };
   imputeMissings = derive2 { name="imputeMissings"; version="0.0.3"; sha256="1dfhi235j1qz2mv89j92b903j5mdwlzisiyvvi9mmiacdj5ln89z"; depends=[randomForest]; };
   imputeMulti = derive2 { name="imputeMulti"; version="0.6.4"; sha256="0ngjbj8pl5mwprrgy234a5p9dhf615z7ymfv8184hby1z6ib3mgl"; depends=[DBI gtools Rcpp RSQLite]; };
   imputePSF = derive2 { name="imputePSF"; version="0.1.0"; sha256="0xfd2mybg0cbi3n35j28s4xq4iwr5rq4mqwgdqml7l2rlzidcwc8"; depends=[PSF]; };
-  imputeR = derive2 { name="imputeR"; version="2.0"; sha256="0xyvy785jb1mv06jq25cnsbgiywi3857sdiizcjck7bx970lk02n"; depends=[caret Cubist gbm glmnet mboost pls rda reshape2 ridge rpart]; };
+  imputeR = derive2 { name="imputeR"; version="2.1"; sha256="1xsawars52jhxfpl4hx8ghhndrvqk9vrrgajrrz2xrzi88kf6in2"; depends=[reshape2]; };
   imputeTS = derive2 { name="imputeTS"; version="2.7"; sha256="12y6qzy00kb7jap4h92f3zpgdazlw3y4zydhv7gzfsmx1ka7nsfm"; depends=[forecast magrittr Rcpp stinepack]; };
   imputeTestbench = derive2 { name="imputeTestbench"; version="3.0.1"; sha256="0yxvwk1bcsid116a4zqsagf2dl3vhzva559bfjjcqdgyniapcmcj"; depends=[dplyr forecast ggplot2 imputeTS reshape2 tidyr zoo]; };
   imputeYn = derive2 { name="imputeYn"; version="1.3"; sha256="1b21w1aa5f7yiq8k0wa86wvbg4ij7f6ldwn6asfqwb0b90rvsgvs"; depends=[boot emplik mvtnorm quadprog survival]; };
-  imsig = derive2 { name="imsig"; version="0.1.0"; sha256="0qjr2xbha6ikcfmkl0crhf9akrbygwsk87xhb45q8633fk3ssw51"; depends=[ggplot2 gridExtra HiClimR igraph RColorBrewer survival]; };
+  imsig = derive2 { name="imsig"; version="1.0.0"; sha256="01ww48x9a189dvr81bangfhchr70l0sg26jdpcxf41nh2fmslfxx"; depends=[ggplot2 gridExtra HiClimR igraph RColorBrewer survival]; };
   in2extRemes = derive2 { name="in2extRemes"; version="1.0-3"; sha256="1lgsqm29zmjyf8kynyra2p3q7bs4fyd7ac4v6s3pbahzhhzdk94y"; depends=[extRemes]; };
   inTrees = derive2 { name="inTrees"; version="1.2"; sha256="1mwn2ijkyw0y9xcgrr56wxd2326ikarlsi79l59dplvlx2iwbi6c"; depends=[arules data_table gbm RRF xgboost xtable]; };
   inaparc = derive2 { name="inaparc"; version="0.2.0"; sha256="0rgbnvvqzbx4j40qz32l1bxmg3wwzbl6719wb9m3xpakblvhhxs2"; depends=[kpeaks lhs]; };
@@ -7565,16 +7893,16 @@ in with self; {
   inbreedR = derive2 { name="inbreedR"; version="0.3.2"; sha256="09fr13ckyn2skiigkn4qdx5g080gcmyyrvzhcp0wrml9wpmy0h4z"; depends=[data_table]; };
   incR = derive2 { name="incR"; version="1.1.0"; sha256="0q41bs7pf6hqyfwvcwc2sxq44jq95qq3qsddz53f8gphwjsyf1v7"; depends=[dplyr ggplot2 lubridate maptools rgeos]; };
   inca = derive2 { name="inca"; version="0.0.3"; sha256="1g9js84xa5b6jl8gp4k0c55kjazfaw5g9biwk4v6vz3vwkwayyzh"; depends=[Matrix Rcpp RcppArmadillo]; };
-  incadata = derive2 { name="incadata"; version="0.6.1"; sha256="05i0zifdzc1w6p6annhzp9rdd4v82gx2sxi4lqpdnraaczdrhgbb"; depends=[backports decoder dplyr rccmisc rvest sweidnumbr xml2]; };
+  incadata = derive2 { name="incadata"; version="0.6.4"; sha256="1aj07zhf82wwg80jp461xapw8x9caa7daa59n4mxl8nqryrs77q0"; depends=[backports decoder dplyr rccmisc rvest sweidnumbr xml2]; };
   incgraph = derive2 { name="incgraph"; version="1.0.1"; sha256="0zjvxk2krdlm5bcr0m80nxy46f69a1xadfjw5sjw249b28wdclml"; depends=[BH dplyr orca purrr Rcpp testthat tibble]; };
-  incidence = derive2 { name="incidence"; version="1.3.1"; sha256="0qylfim4gc9i9dyhyjpfar95rznbf1lh06hvvjmxxyrc1a7lzaxw"; depends=[ggplot2 ISOweek]; };
-  inctools = derive2 { name="inctools"; version="1.0.11"; sha256="08a1aqsx1f1mkykpgbqbgvai60zxj9zwpmxynyajbm4lwr3rc6rp"; depends=[cubature doParallel dplyr foreach ggplot2 glm2 magrittr plyr pracma tmvtnorm]; };
+  incidence = derive2 { name="incidence"; version="1.4.1"; sha256="13c518hlhpmdl4vw4xbb593arw2pvzsj18dpvdzg7n2f8lslbyr8"; depends=[ggplot2 ISOweek]; };
+  inctools = derive2 { name="inctools"; version="1.0.14"; sha256="0ial852b96x310wzvla9lahxz3mwbqqv0l0lafs0bnmyaiiwycxv"; depends=[cubature doParallel dplyr foreach ggplot2 glm2 magrittr plyr pracma rlang tibble tmvtnorm]; };
   indelmiss = derive2 { name="indelmiss"; version="1.0.8"; sha256="0674hvgdq0fxab3h55iililphrr6lqp25359crvkqqgb8higbs0h"; depends=[ape numDeriv phangorn Rcpp]; };
   indicspecies = derive2 { name="indicspecies"; version="1.7.6"; sha256="0a7s37k3bg4cnzkvn833nrwi6hnfa5f6jxa8ra954v4sp55g6i5d"; depends=[permute]; };
   indirect = derive2 { name="indirect"; version="0.2.0"; sha256="1k7xwsx655nzl43s1mkaysyn5gydq973gynmqip67lssnm7cnch4"; depends=[gplots MASS]; };
   inegiR = derive2 { name="inegiR"; version="2.0.0"; sha256="00bhb3zvqhir2rqza3axk98lxhq98s41apwpsm242pqb7wsnmg95"; depends=[jsonlite plyr XML zoo]; };
   ineq = derive2 { name="ineq"; version="0.2-13"; sha256="09fsxyrh0j7mwmb5hkhmrzgcy7kf85jxkh7zlwpgqgcsyl1n91z0"; depends=[]; };
-  infer = derive2 { name="infer"; version="0.2.0"; sha256="1wkfbrwq616nj1k0rmwvbnqy8ngrmxc49d6j69s5vpws2g3ga00j"; depends=[assertive dplyr ggplot2 magrittr rlang tibble]; };
+  infer = derive2 { name="infer"; version="0.3.1"; sha256="0yzminwsndx1aizb91palzvlmg9pp7hnx0zfpifbj1vv00jz6d1c"; depends=[dplyr ggplot2 glue magrittr rlang tibble]; };
   inference = derive2 { name="inference"; version="0.1.0"; sha256="0j92isfkbhk13yx2hd3a5dd7ikcbgjc04zisd1n5kmg6ajw2aj6r"; depends=[sandwich]; };
   inferference = derive2 { name="inferference"; version="1.0.0"; sha256="1x6i8ycba9z57m1n143p1j9pmlfrhjhi4iw0fsny8xmcvqrlr85p"; depends=[Formula lme4 numDeriv]; };
   inferr = derive2 { name="inferr"; version="0.3.0"; sha256="1z5bfq0gv1h6iw8nwc19ar6f2sgsvgs3ghq52s09wclqk2yy4azz"; depends=[dplyr magrittr purrr Rcpp rlang shiny tibble tidyr]; };
@@ -7592,13 +7920,13 @@ in with self; {
   infutil = derive2 { name="infutil"; version="1.0"; sha256="02d0hfbkdqjj0lm1fzwwxy60831kbcjn2m4rfblpib0krkbpz72n"; depends=[ltm]; };
   ini = derive2 { name="ini"; version="0.3.1"; sha256="04yqij344dwm0xqgara8xia42mlmij3i8711qbb5534w05a1l6bv"; depends=[]; };
   injectoR = derive2 { name="injectoR"; version="0.2.4"; sha256="0sa32cspp6y3m04yfmd02kxx55mk7l9jxf4r9pk1a6k3sqnj6fl8"; depends=[]; };
-  inlabru = derive2 { name="inlabru"; version="2.1.3"; sha256="09sdbzg3cdg43clkwnahkhyns019gjya55m6zhq340mgrnirx2i5"; depends=[ggplot2 rgdal rgeos sp]; };
+  inlabru = derive2 { name="inlabru"; version="2.1.9"; sha256="0jbqk8hcsfgzwr35icqwc6ch0n9v7s812hqwmn3q13l2a4lznm91"; depends=[ggplot2 Matrix rgdal rgeos sp]; };
   inline = derive2 { name="inline"; version="0.3.15"; sha256="0s4wssvpan189fijahknxq5s22ww9bzmdlmyhnra748r7khky17z"; depends=[]; };
   inlinedocs = derive2 { name="inlinedocs"; version="2013.9.3"; sha256="13vk6v9723wlfv1z5fxmvxfqhaj68h0x3s2qq9j6ickr4wakb4ar"; depends=[]; };
-  inlmisc = derive2 { name="inlmisc"; version="0.4.0"; sha256="0hhw87zvqd2mplpbmbh1y91pyfgyqamw4wiz74a6qwn705bcymah"; depends=[checkmate dplyr GA htmltools htmlwidgets igraph knitr leaflet raster rgdal rgeos sp xtable]; };
-  inpdfr = derive2 { name="inpdfr"; version="0.1.6"; sha256="0fwznjsq4wccqfnb3a5ic1nyx538jxmlcv59xdz06y6raczjp9q9"; depends=[ca cluster entropart metacom R_devices RColorBrewer SnowballC stringi tm wordcloud]; };
+  inlmisc = derive2 { name="inlmisc"; version="0.4.3"; sha256="0y13mxibdnn1397wbxx52gvk213mgslqg40ymcrzgvwb4c7rp8sn"; depends=[checkmate dplyr GA htmltools htmlwidgets igraph knitr leaflet raster rgdal rgeos sp xtable]; };
+  inpdfr = derive2 { name="inpdfr"; version="0.1.8"; sha256="1xscrqkwl15l5r1sik6mnhzl868s9yxscm74sp740n3107md92hx"; depends=[ca cluster entropart metacom R_devices RColorBrewer SnowballC stringi tm wordcloud]; };
   inplace = derive2 { name="inplace"; version="0.1.0"; sha256="1lmvfjxgficlzxbn953wvfa1n9lys9gqprix6zbqqr4d6vkm0srj"; depends=[Rcpp]; };
-  insect = derive2 { name="insect"; version="1.1.0"; sha256="11r21ljif0pwswmmdzbyy3i9q2rwxn7izhr44dkiwcyjv7yig54j"; depends=[ape aphid kmer openssl phylogram xml2]; };
+  insect = derive2 { name="insect"; version="1.1.1"; sha256="0gvjml5f7c8k6vsp1s5l85avmh7j6asy2ljkhcrwy6hybf8z1dj5"; depends=[ape aphid kmer openssl phylogram xml2]; };
   insideRODE = derive2 { name="insideRODE"; version="2.0"; sha256="1ffndk8761cpkririb3g1qsq9nwmh82lcrpql9i5fksdprvdjzcw"; depends=[deSolve lattice nlme]; };
   insol = derive2 { name="insol"; version="1.1.1"; sha256="0zbawkp4qb0kqb7y9ibiyy8sa9rfgbzwmcdswx6s87p0h7brrqn6"; depends=[]; };
   inspectr = derive2 { name="inspectr"; version="1.0.0"; sha256="04rpr5ajpdx1d49y327dryxwxk27yljj4c96i9qglf02i9kmplkg"; depends=[openxlsx]; };
@@ -7610,12 +7938,13 @@ in with self; {
   intRvals = derive2 { name="intRvals"; version="1.0.0"; sha256="0391raj5wq6issvzqm8bfnv1ap2hh5nfsqi9r1x5ss37fvcq5fjm"; depends=[lme4 plyr]; };
   intamap = derive2 { name="intamap"; version="1.4-9"; sha256="060sghkqsdrxpa340rvjskh2wafdkffa5q8nlbg1msnsmk639lkn"; depends=[automap doParallel evd foreach gstat MASS mvtnorm rgdal sp]; };
   intamapInteractive = derive2 { name="intamapInteractive"; version="1.1-12"; sha256="1h8kzinfpp2rwal11xqs9g99rmigs0jlsr5h0qh0zsill73minid"; depends=[automap gstat intamap rgdal sp spatstat spcosa]; };
-  intccr = derive2 { name="intccr"; version="1.0.2"; sha256="1vdrdig82xbg4ax67vsr00v28z40qd54kcw6b8cml59sqn13zxl2"; depends=[alabama doParallel foreach numDeriv]; };
+  intccr = derive2 { name="intccr"; version="1.0.3"; sha256="0sk43k8zw2ssa6cc8ljxd51q7489kq1bb2r1j5rp18895kq3c8wc"; depends=[alabama doParallel foreach numDeriv]; };
   intcensROC = derive2 { name="intcensROC"; version="0.1.1"; sha256="0qkgp6iw2s772zk2533jsar64f5mqgy4874swgarnfgd4jvkwy2k"; depends=[pracma Rcpp RcppEigen]; };
   integIRTy = derive2 { name="integIRTy"; version="1.0.5"; sha256="13p1r3rccsmaqwn0mrskr86jpww72aaq8zf2a8rnbpzkfrq9ni14"; depends=[abind doParallel foreach ltm MASS mclust]; };
   interAdapt = derive2 { name="interAdapt"; version="0.1"; sha256="06ki36l1mrnd9lbm696a6gapr488dz8na4wvl9y1fif9hfv4zk25"; depends=[knitcitations knitr mvtnorm RCurl shiny]; };
   interactionTest = derive2 { name="interactionTest"; version="1.0.1"; sha256="021qsg9rglc4vj3hkrvfm2snd77zna7ql2i0m5hf77yzxxc35jc6"; depends=[]; };
   intercure = derive2 { name="intercure"; version="0.1.0"; sha256="0j71dqcbcfl1zpfidh3xys5h3ggyhrzq3avkdm9v18pv464x8xlv"; depends=[foreach iterators MASS Matrix survival]; };
+  interep = derive2 { name="interep"; version="0.1.0"; sha256="1k1pp44sjjdyrbbyv5rlr1whrhmrk2nbn51jrgxxy5i0gwg2jza0"; depends=[glmnet MASS]; };
   interferenceCI = derive2 { name="interferenceCI"; version="1.1"; sha256="19ky10nn6ygma6yy5h1krxx61aikh3yx5y39p68a944mz8f72vsn"; depends=[gtools]; };
   interflex = derive2 { name="interflex"; version="1.0.4"; sha256="1w92h0ay0rx8gy9jcj179206lz9irg8g0ryl31p3ijqip73v55rm"; depends=[doParallel foreach ggplot2 lfe Lmoments lmtest mgcv pcse Rcpp RcppArmadillo sandwich]; };
   interfr = derive2 { name="interfr"; version="0.1.0"; sha256="1wn7i8dsll1qq3v39hgpbqnkjc8f4wlffy73453rw9lpq61y2fgj"; depends=[CircStats colorSpec plotrix]; };
@@ -7632,7 +7961,7 @@ in with self; {
   intrinsicDimension = derive2 { name="intrinsicDimension"; version="1.1.0"; sha256="0mxg9dvhn5rr1rchpqzf5i1p37kvabcb9jyqbn49zgzcwdvm6cbs"; depends=[yaImpute]; };
   introgress = derive2 { name="introgress"; version="1.2.3"; sha256="1j527gf7pmfy5365p2j2jbxq0fb0xh2992hj4d7dxapn4psgmvsk"; depends=[genetics nnet RColorBrewer]; };
   intrval = derive2 { name="intrval"; version="0.1-1"; sha256="1p66cjpn43xib7rrnyv3jqr6bb49d3dxf888p8hxnr7kx9wfalkn"; depends=[]; };
-  intsvy = derive2 { name="intsvy"; version="2.1"; sha256="0fsib9w1zvg3phmzrspdc3d44rl5p222j0j9xmdhpcq9r6sy0bp9"; depends=[foreign ggplot2 Hmisc memisc plyr reshape]; };
+  intsvy = derive2 { name="intsvy"; version="2.3"; sha256="1hm7jkh8p3hspbb20185zgs5y4c3zp9wvj02m0s67qiq8sf5nv0h"; depends=[foreign ggplot2 Hmisc memisc plyr reshape]; };
   intubate = derive2 { name="intubate"; version="1.0.0"; sha256="03ikqwai7wdahdfyzdy42xs8qpdhl9gmbak2qd82yxjl62956i8c"; depends=[]; };
   inum = derive2 { name="inum"; version="1.0-0"; sha256="1b013ak4d0iiwk5a0s7vvsl34d0hs881iq7zrvah4skb89x82cpm"; depends=[libcoin]; };
   invGauss = derive2 { name="invGauss"; version="1.1"; sha256="0l93pk2sh74dd6a6f3970nval5p29sz47ynzqnphx0wl3yfmmg9c"; depends=[optimx survival]; };
@@ -7640,13 +7969,15 @@ in with self; {
   investr = derive2 { name="investr"; version="1.4.0"; sha256="0l47bfwxssfr3maprkpwnmgxnxccl3ch4grc7f968iiqk83mcxw9"; depends=[nlme]; };
   invgamma = derive2 { name="invgamma"; version="1.1"; sha256="12ga2y4wc9bc5zz6vimvxwgjpsx3ys3209nq63gscbw559ydxa5a"; depends=[]; };
   io = derive2 { name="io"; version="0.3.0"; sha256="16mnbxq217ixfg2qfqrj97qqfpc5dj622hf80nwray6hp47lbw2s"; depends=[filenamer stringr]; };
+  ioanalysis = derive2 { name="ioanalysis"; version="0.1"; sha256="13hkcks9sm7swmvd1lzzz5gqs02mjdqhrx06f7bkbf77dxckxb8z"; depends=[]; };
   ioncopy = derive2 { name="ioncopy"; version="2.1.1"; sha256="1lkav3xvh2qazfmcxwisrjy8wzf639a4md71499jj5rmy650crys"; depends=[shiny]; };
   ionflows = derive2 { name="ionflows"; version="1.1"; sha256="1k9yz82hbjwljyg4cmi675ppykrc2yq9md8x1hhkfxmp070whcxl"; depends=[Biostrings]; };
   ionr = derive2 { name="ionr"; version="0.3.0"; sha256="18rv5n5gihb6pz36s45yj17sdjsbj4485k4lnggdjj1gbbjkz2ni"; depends=[gplots psych]; };
   iopsych = derive2 { name="iopsych"; version="0.90.1"; sha256="0adxwxnb1zdlld3icdggx7cq6cp8z4h1jf105485w322a8c6s9ik"; depends=[mco mvtnorm]; };
   iosmooth = derive2 { name="iosmooth"; version="0.94"; sha256="06xgzhjgb6pznjzfli193q7kn8sh5jmqsssgymwj98bw7iwn4q3z"; depends=[]; };
-  iotables = derive2 { name="iotables"; version="0.2.4"; sha256="17xw0xjj6xy99f41ln043agaqcw6q3s0i99as06471kyscgan8n7"; depends=[dplyr eurostat forcats magrittr plyr tidyr]; };
+  iotables = derive2 { name="iotables"; version="0.3.4"; sha256="08hw05samkkdvpbhjqr653brmciszah5faydiqvrdgl02yvjmdw4"; depends=[dplyr eurostat forcats lubridate magrittr plyr tidyr]; };
   iotools = derive2 { name="iotools"; version="0.2-5"; sha256="0rn6kvlcijnhlwajh6nmi80qlamxgz0x3pn09yp4hyfpl3zxg1fz"; depends=[]; };
+  ipc = derive2 { name="ipc"; version="0.1.0"; sha256="1y2py1ihh414vsjppy2qw9b4m0yn5mrbi5y69p9d6akj5bm61833"; depends=[R6 redux shiny txtq]; };
   ipdmeta = derive2 { name="ipdmeta"; version="2.4"; sha256="0k9wqpmrvqdh73brmdzv86a2dbyddjyyyqzqgp1vqb3k48k009s2"; depends=[nlme]; };
   ipdw = derive2 { name="ipdw"; version="0.2-6"; sha256="1jfixvywxdhnpqz62ld2c8n6yacg88q3y1n1aisqqb7szz0zf23z"; depends=[gdistance raster sp]; };
   ipeaData = derive2 { name="ipeaData"; version="0.0.2"; sha256="1nggkcb8rrnc3d14nhzpf48f2dpf6jcsw54i40jcp7656jqv1jnb"; depends=[data_table dplyr httr jsonlite RCurl]; };
@@ -7654,16 +7985,16 @@ in with self; {
   ipfp = derive2 { name="ipfp"; version="1.0.1"; sha256="12aklhf9p70r9b2wi0qgbl835b4lil805c31n1ka4kdix4b4cpr4"; depends=[]; };
   ipft = derive2 { name="ipft"; version="0.7.2"; sha256="0jifmkwac5yfl110200ljm3pas3321j068af9xqzqs0av20m8hps"; depends=[apcluster cluster dplyr ggplot2 Rcpp]; };
   iplots = derive2 { name="iplots"; version="1.1-7.1"; sha256="1bz8n9cnx6zy3wsr49h55r0l5ikfl0xjg4r76fi4giid2a3ba4lf"; depends=[png rJava]; };
-  ipred = derive2 { name="ipred"; version="0.9-6"; sha256="1vrw1pqcpnc04x1r2h9grdfm6bivs358sww5gg90jwlvxcw69lxq"; depends=[class MASS nnet prodlim rpart survival]; };
-  iprior = derive2 { name="iprior"; version="0.7.1"; sha256="01sav9594grc413kf6s9jnp4hs4q9f9424qphm91xckydiqisaav"; depends=[doSNOW foreach ggplot2 mvtnorm Rcpp RcppEigen reshape2 scales]; };
+  ipred = derive2 { name="ipred"; version="0.9-7"; sha256="0q53cqs46501wsd4cmfsmr78l8nv1hkbamk9m0ns5qy02df5r254"; depends=[class MASS nnet prodlim rpart survival]; };
+  iprior = derive2 { name="iprior"; version="0.7.2"; sha256="1wc7f6gh0qas197jf78pb8wmazhddbny3l0w47f3v6fqwa581ls0"; depends=[doSNOW foreach ggplot2 mvtnorm Rcpp RcppEigen reshape2 scales]; };
   ips = derive2 { name="ips"; version="0.0-7"; sha256="0r4394xbchv6czad9jz4ijnfz8ss3wfdvh7ixrdxic2xrw0ic90v"; depends=[ape colorspace XML]; };
-  iptmnetr = derive2 { name="iptmnetr"; version="0.1.2"; sha256="1m5rw66qbv5pa91ywvir2i0wnwa0j6z75242bc468d2hakz62k99"; depends=[httr jsonlite]; };
-  iptools = derive2 { name="iptools"; version="0.4.0"; sha256="0c3j5sl129xl75p14qr880ll1y3yss3zqg39zbj2jp6wcv9rvafx"; depends=[AsioHeaders BH ISOcodes Rcpp]; };
-  ipumsr = derive2 { name="ipumsr"; version="0.2.0"; sha256="0rmcl2jq12yvc5lqyi1mi5ggl59w2g6zvf3w1zpnb261vlrvikda"; depends=[dplyr haven purrr raster Rcpp readr rlang stringr tibble tidyr xml2 zeallot]; };
+  iptmnetr = derive2 { name="iptmnetr"; version="0.1.5"; sha256="02lljbbr2sm90sgyjv6a17mbh758n93qqxfr900g0m557nsv35i8"; depends=[httr jsonlite]; };
+  iptools = derive2 { name="iptools"; version="0.6.0"; sha256="1k58czfq8g2q1gjxnhkxhr0znqmmyyaz45vffd57pdq1199wcdm1"; depends=[AsioHeaders BH Rcpp stringi triebeard]; };
+  ipumsr = derive2 { name="ipumsr"; version="0.3.0"; sha256="114q2j6sadzg4s1jc66sxasj86hsipmf874dbhk1z238wj948py8"; depends=[cli crayon dplyr haven hipread pillar purrr R6 raster Rcpp readr rlang stringr tibble tidyr xml2 zeallot]; };
   ipw = derive2 { name="ipw"; version="1.0-11"; sha256="11a34j6lp329ran2r9kxn8184kfmibkdig74lsy6lj4w4w0d71cm"; depends=[geepack MASS nnet survival]; };
   ipwErrorY = derive2 { name="ipwErrorY"; version="1.0"; sha256="1n1j1crxnnfkg38drgg8rhc13y6s8hcsr5g0f6hi4v680dgrkhmp"; depends=[nleqslv]; };
   iqLearn = derive2 { name="iqLearn"; version="1.5"; sha256="1zn43zvx0mjzh96bm73scacmladamy8jmhxim7hcfq39cfhiw3c8"; depends=[]; };
-  irace = derive2 { name="irace"; version="3.0"; sha256="1p7amffds888zfg05lfkmvl2ciydmf8bn42g2kgfy13k9r2bk96r"; depends=[]; };
+  irace = derive2 { name="irace"; version="3.1"; sha256="0r3hbsx8c40kxs62xy3pnivy6ava2xrg0h39j95zrmiqdma77sxq"; depends=[]; };
   ircor = derive2 { name="ircor"; version="1.0"; sha256="07apa4l4ib11xw25d44b403s3la29sqlid13q41hjrlfxafm91ld"; depends=[]; };
   irlba = derive2 { name="irlba"; version="2.3.2"; sha256="0f7wb12wa0zbyllk5adcf4f517wgjpkhsx4j176i9ax6xy7jvprz"; depends=[Matrix]; };
   irr = derive2 { name="irr"; version="0.84"; sha256="0njxackqj8hyf9j1yszwxbnaxgp27fc2bwyyf7dip72wc12f81n5"; depends=[lpSolve]; };
@@ -7676,7 +8007,7 @@ in with self; {
   irtreliability = derive2 { name="irtreliability"; version="0.1-1"; sha256="15qs8bvgrwajj5kfd57rd34l1p2805ilyd7w60ngrqc14d6az9d2"; depends=[fastGHQuad ltm mirt]; };
   isa2 = derive2 { name="isa2"; version="0.3.5"; sha256="17vm0906szhrh2k5x694vwcfijbzmd1v3axpszfybc0lgds437cv"; depends=[lattice]; };
   isdals = derive2 { name="isdals"; version="2.0-4"; sha256="15p432fskdz2r8523cw122mfhvrq8vdsdsrd0kz9yfin4b5z3zfh"; depends=[]; };
-  isdparser = derive2 { name="isdparser"; version="0.2.0"; sha256="061wi94rj3iyvf3dgvcjy0x46hvwhr4ifx0jhirz44bj0c8g3h7j"; depends=[data_table tibble]; };
+  isdparser = derive2 { name="isdparser"; version="0.3.0"; sha256="1fdp4zk3pzpi5m026rlsrhyl4r5rfxy9sr8d04w2i0316rziv7kc"; depends=[data_table tibble]; };
   isingLenzMC = derive2 { name="isingLenzMC"; version="0.2.5"; sha256="1pd1s3a1rv7vlxd5db1pgwdjps8w5im4zz2h3qzal9cwbis0hb51"; depends=[]; };
   island = derive2 { name="island"; version="0.2.1"; sha256="0fg5nlg5iq3cl3i8xx9qq4vvizdklg6adjxmp2qrg0dyfvkllhsq"; depends=[]; };
   ismev = derive2 { name="ismev"; version="1.42"; sha256="19giigxwf62cdkf7mglsca649n2ignb9bxyg9zl7im1vm3ngnmqd"; depends=[mgcv]; };
@@ -7694,15 +8025,16 @@ in with self; {
   itan = derive2 { name="itan"; version="1.0"; sha256="082vh5gvh8hgyhk8nswll16ldhnp0pfpxnz1yx05zsc4nzvm92cf"; depends=[ggplot2 reshape]; };
   itcSegment = derive2 { name="itcSegment"; version="0.8"; sha256="032wj34313m3wigdfalq356srdzg0cvnvxnaxwxws6bc44r78izf"; depends=[maptools raster rgeos sp]; };
   iteRates = derive2 { name="iteRates"; version="3.1"; sha256="1dycmlm3vldc60wz2jjdfbla14383911zfahgal5mx8whxwq95c5"; depends=[ape apTreeshape geiger gtools MASS partitions VGAM]; };
+  itemanalysis = derive2 { name="itemanalysis"; version="1.0"; sha256="1ksbd69mca45jlr2gpars87cf4jfm5rx6sz009sv6a83x831x5rq"; depends=[car ggplot2 polycor]; };
   iterLap = derive2 { name="iterLap"; version="1.1-3"; sha256="079d4hxf1ha8pgibzb4r1yk7xqpzndd7hjbp8294qb26jvvcnd8q"; depends=[quadprog randtoolbox]; };
-  iterators = derive2 { name="iterators"; version="1.0.9"; sha256="16sycjq912ix52fjxjhcwiaqr0yj1v5iqmrvjljd3z857031w06y"; depends=[]; };
-  iterpc = derive2 { name="iterpc"; version="0.4.0"; sha256="0py11pvhl71v9fl0a6n317va8cggih4l0afn6yldnah9ai2cakvy"; depends=[arrangements gmp iterators]; };
+  iterators = derive2 { name="iterators"; version="1.0.10"; sha256="1s3iykfvccpnzs73z90rx18qvbvgw2dgl4nfcrvm5m1850qb5qd9"; depends=[]; };
+  iterpc = derive2 { name="iterpc"; version="0.4.1"; sha256="0q08bdr5v849z2431f2sdh9f7aagjxm34si0kn0bp85dnlqri8rx"; depends=[arrangements gmp iterators]; };
   itertools = derive2 { name="itertools"; version="0.1-3"; sha256="1ls5biiva10pb1dj3ph4griykb9vam02hkrdmlr5a5wf660hg6xn"; depends=[iterators]; };
   itertools2 = derive2 { name="itertools2"; version="0.1.1"; sha256="0yra3x9ddvn5pp3jibm69205zazv81bz0cflw4mdvxpqadaf9f96"; depends=[iterators]; };
   itree = derive2 { name="itree"; version="0.1"; sha256="164zgr142hcp9plnbccs6m823p4m0prk73bvp54bc7bqnqmc3d9a"; depends=[]; };
   itsadug = derive2 { name="itsadug"; version="2.3"; sha256="0wzdy82h05264n9cr84w5j98vz24was9hh1y0wdp56ws3dfbav9m"; depends=[mgcv plotfunctions]; };
-  itsmr = derive2 { name="itsmr"; version="1.8"; sha256="1w2sjdw9s4smsqdbjabj9jjync0fb931aajjbqhm49cx0g72hi8g"; depends=[]; };
-  itunesr = derive2 { name="itunesr"; version="0.1.1"; sha256="1h6yyqcmvm9dfwscmq5ghqi3r4fdracw1n206058j9bdjpakxqkl"; depends=[curl jsonlite lubridate xml2]; };
+  itsmr = derive2 { name="itsmr"; version="1.9"; sha256="0dmijaq6q31irwrjqv5gq1yfbgggwb3m6rwbg4lx1r9l3cqays7i"; depends=[]; };
+  itunesr = derive2 { name="itunesr"; version="0.1.3"; sha256="1czwkrqy3jqw1x0z5zj2kvp4p11s5zdiswwhx9jfxdcsg86zhr45"; depends=[curl jsonlite lubridate xml2]; };
   ivbma = derive2 { name="ivbma"; version="1.05"; sha256="0d7kg6pkdx1aj1i6kqs2r7j1klxxwymml63qnrq6a6fia3ck9kk9"; depends=[]; };
   ivfixed = derive2 { name="ivfixed"; version="1.0"; sha256="0a26zrkvz0ffq4zxdx5vhr1nvsi9c15s6gvc1zy2pddjz31x2xi5"; depends=[Formula]; };
   ivlewbel = derive2 { name="ivlewbel"; version="1.1"; sha256="0ykcfikm2i28s3fm6zzx8cjvpwhksg8an0rfr0b35gf7p69brgag"; depends=[gmm lmtest plyr]; };
@@ -7716,56 +8048,66 @@ in with self; {
   jaatha = derive2 { name="jaatha"; version="3.2.0"; sha256="00886j0cabrq6a69w8s1gsfkmx1wqs1vpxjafpm71msk54r0dj55"; depends=[assertthat R6]; };
   jaccard = derive2 { name="jaccard"; version="0.1.0"; sha256="1dmla6qc1k8iw2d7zfjqhf13gqd2lpsrj09yh47ljf994fpab936"; depends=[dplyr magrittr qvalue Rcpp]; };
   jackknifeKME = derive2 { name="jackknifeKME"; version="1.2"; sha256="0c5shl6s46kz7a623gccqk2plrrf2g29nwr6vbny6009pq3jvzam"; depends=[imputeYn]; };
-  jackstraw = derive2 { name="jackstraw"; version="1.1.1"; sha256="18iah8sq64p7c6rxs21w8rbxvbmbh03jzqbam1ilp46ayfqzk9qc"; depends=[corpcor lfa]; };
+  jackstraw = derive2 { name="jackstraw"; version="1.2"; sha256="1aciv0km63nqhiakqvy3v8bz31mjlknfdz2lkcv2g3pfhwi3fxh7"; depends=[cluster ClusterR corpcor lfa qvalue]; };
   jacpop = derive2 { name="jacpop"; version="0.5"; sha256="056c82d4a10rgq0p4p63y9i94dy1kqp3yh7xms9nx9q2xb940xb5"; depends=[]; };
-  jagsUI = derive2 { name="jagsUI"; version="1.4.9"; sha256="1c2fq7q3kvf092j6r9ci0gigjpb61dj19phzm8mqi05q2k08siin"; depends=[coda lattice rjags]; };
+  jagsUI = derive2 { name="jagsUI"; version="1.5.0"; sha256="0cfixhv4fabka13xvnglwacgpadhdr12w6lk563zfz83192r7h8g"; depends=[coda lattice rjags]; };
   james_analysis = derive2 { name="james.analysis"; version="1.0.1"; sha256="1b2n4ds4ivfk564z87s2rxjl9j0y4drd3cmyv8jqpccmdvx1137d"; depends=[naturalsort rjson]; };
   janeaustenr = derive2 { name="janeaustenr"; version="0.1.5"; sha256="1wyn4qc28a3sval8shmyi2d7s4nl3jh96s8pzq871brxcmrncbwr"; depends=[]; };
-  janitor = derive2 { name="janitor"; version="1.0.0"; sha256="0q6mq8s8k7yyx2459nhjvlxjaqxn61k3dpxdhcq0fyk37dafva79"; depends=[dplyr magrittr purrr rlang snakecase tidyr]; };
+  janitor = derive2 { name="janitor"; version="1.1.1"; sha256="0sqp6sajdzs8wwvsfkkfpgak9fzknjfffqpgjm6an7spdvsl2js0"; depends=[dplyr magrittr purrr rlang snakecase tidyr]; };
   jaod = derive2 { name="jaod"; version="0.1.0"; sha256="0wh1nlfhks4c1dga6h7554pg44pamj73x5in71k2xw0yp292zm6x"; depends=[crul jsonlite tibble]; };
+  jarbes = derive2 { name="jarbes"; version="1.7.0"; sha256="1wvix7a1wv6mb4i1r3axixyvrwg6sj5pnc22ajri0d3dbdmklv23"; depends=[ggExtra ggplot2 gridExtra MASS mcmcplots R2jags rjags]; };
   jcext = derive2 { name="jcext"; version="0.1"; sha256="18vmf57l2kv3rvi6laqp948m8mjkdxdy0vi4xp68480b2mjmvij1"; depends=[ggplot2 maps RColorBrewer rworldmap sp stringr]; };
-  jcolors = derive2 { name="jcolors"; version="0.0.2"; sha256="0d71sdvj7hwafj0sx2z1nyza5j2lfd8y5yj1p94yrw32wi7b89jn"; depends=[ggplot2 scales]; };
+  jcolors = derive2 { name="jcolors"; version="0.0.3"; sha256="1mzpvm5mhmr2ahwz1lnqvp1cs805jh0zlfwspvqwr0sfbzmmkrib"; depends=[ggplot2 scales]; };
   jdx = derive2 { name="jdx"; version="0.1.3"; sha256="0d9m0sbdrlh8jfijn5mrfw8y2bpj5vxm0bcjlcc42ipxj47962l9"; depends=[rJava]; };
-  jeek = derive2 { name="jeek"; version="1.1.0"; sha256="0s5gsgsznn8n39s0s35qxdl0q7bkvqlrf9xhland3xlzcrvpyp2g"; depends=[igraph lpSolve pcaPP]; };
+  jeek = derive2 { name="jeek"; version="1.1.1"; sha256="15n0k0i1wwp72g8zqrjmglnckab3p65q3rnpg6d6h8hjcpv82i7g"; depends=[igraph lpSolve pcaPP]; };
+  jetpack = derive2 { name="jetpack"; version="0.3.1"; sha256="13m555bdx4f57wy3lxgllhrbd2x7vwvblvms6yajsdpv0x6g7n1x"; depends=[crayon desc devtools docopt httr packrat]; };
   jetset = derive2 { name="jetset"; version="3.4.0"; sha256="0c99h5npsv2gf5d59s4qhkaqmjhbwa3prcykk24wzhnpfq6y6xhp"; depends=[AnnotationDbi org_Hs_eg_db]; };
   jiebaR = derive2 { name="jiebaR"; version="0.9.99"; sha256="1g39z9ms975ig2j9nd6nqja1l8gy50fa9pwlz563xk6p2z6v058j"; depends=[jiebaRD Rcpp]; };
   jiebaRD = derive2 { name="jiebaRD"; version="0.1"; sha256="1wadpcdca4pm56r8q22y4axmqdbb2dazsh2vlhjy73rpymqfcph4"; depends=[]; };
+  jipApprox = derive2 { name="jipApprox"; version="0.1.1"; sha256="0kgx7v8fyfdh8kdz8jnh6y6zrf7ivgqjgagpddxnynldzcrc2ml7"; depends=[sampling]; };
+  jjb = derive2 { name="jjb"; version="0.1.0"; sha256="0izpvban8v85g6w2mnmimhdh4yg6kcaf046v3jjba368nsj67q9n"; depends=[]; };
   jmcm = derive2 { name="jmcm"; version="0.1.8.0"; sha256="0nv30shwd1219cvs9kaql0n7ppwqngj3avf2qd7nzrnbqp2gl23h"; depends=[Formula Rcpp RcppArmadillo]; };
   jmdem = derive2 { name="jmdem"; version="1.0"; sha256="1qz2l02m4gnxrm1ankr5qqlskl8amphzj8r763yas218fvzfa34q"; depends=[statmod VGAM]; };
+  jmdl = derive2 { name="jmdl"; version="0.3.0"; sha256="0167yj368lh1n79jwbqs4g2asb67hfmgh97519linmfpx0n6xdpa"; depends=[boot Formula MASS minqa mnormt mvtnorm]; };
   jmetrik = derive2 { name="jmetrik"; version="1.1"; sha256="1if1kxx8apgkbxpkjnlj2lpsfnyj2splsg1p3j5vxa7q6wx70f9j"; depends=[]; };
   jmotif = derive2 { name="jmotif"; version="1.0.3"; sha256="1llmrksajrd35kfdzq2vqfm17yv5kwark6gz3rvyzcmbrqk5spqv"; depends=[Rcpp RcppArmadillo]; };
   jmuOutlier = derive2 { name="jmuOutlier"; version="1.4"; sha256="1vrihjvq8l2q7d3z80fkzzzwg6xmnfi8sipsgwic1lcbv6vnqndp"; depends=[]; };
-  jmv = derive2 { name="jmv"; version="0.8.6.2"; sha256="0an3ni6lz85cfcra69mycka6x1hgaas6rv6ybbnikmrv846sx03n"; depends=[afex BayesFactor car emmeans GGally ggplot2 ggridges GPArotation jmvcore lavaan MASS multcomp mvnormtest nnet PMCMR psych R6 ROCR vcd vcdExtra]; };
-  jmvcore = derive2 { name="jmvcore"; version="0.9.1"; sha256="01qv3m1vsabydlkshmqrg15y8nnrzkg49pq2ryxi3r6jw486qq1s"; depends=[base64enc R6 rjson stringi]; };
+  jmv = derive2 { name="jmv"; version="0.9.4"; sha256="141k86skmkfl3pxgay5mginpishnwy3k40cxrj2qbkrzlnx1b9yk"; depends=[afex BayesFactor car emmeans GGally ggplot2 ggridges GPArotation jmvcore lavaan MASS multcomp mvnormtest nnet PMCMR psych R6 ROCR vcd vcdExtra]; };
+  jmvconnect = derive2 { name="jmvconnect"; version="1.0.4"; sha256="1zbhinnd8ngq1824lj3610s1v0vzxjbsvgb7p0q0bjdr3gdpc4n9"; depends=[BH evaluate httr jmvcore rappdirs Rcpp]; };
+  jmvcore = derive2 { name="jmvcore"; version="0.9.4"; sha256="1m47yn81y2g3kba16dn7s3jfw8pp4rzbrlqr3nmdrivp093fqcn3"; depends=[base64enc R6 rjson stringi]; };
   jocre = derive2 { name="jocre"; version="0.3.3"; sha256="1i9n3r16pq6r4sy3fc1rxpil5ws8v2is0xdxafinvwr1hzkv1gz6"; depends=[boot KernSmooth plyr TSP]; };
   joinXL = derive2 { name="joinXL"; version="1.0.1"; sha256="1l76bckjz5r1kdsh0s10i0gpca12rkfkp14346fn7avdcw73v23i"; depends=[data_table openxlsx R_utils rChoiceDialogs Rcpp readxl rJava timeDate timeSeries]; };
   joineR = derive2 { name="joineR"; version="1.2.4"; sha256="05wr7gr3mnsfj8a1m5v1b71gh3fc4pyhj6rqapls7iwrkywbf1b6"; depends=[lattice MASS nlme statmod survival]; };
   joineRML = derive2 { name="joineRML"; version="0.4.2"; sha256="06a7iicq3fngsmmi8qcz2fdzdzvym5s70s3aaqlzxnl4sj9km3g2"; depends=[cobs doParallel foreach ggplot2 lme4 MASS Matrix mvtnorm nlme randtoolbox Rcpp RcppArmadillo survival]; };
   joineRmeta = derive2 { name="joineRmeta"; version="0.1.1"; sha256="0d9wwb3v43v30xjy67j366mhwixzz79bm67j01fqmcdsnmn3qpjn"; depends=[ggplot2 gridExtra gtools JM joineR lme4 MASS Matrix meta msm nlme statmod survival]; };
-  joint_Cox = derive2 { name="joint.Cox"; version="2.15"; sha256="1lcli1p1qv0ws1zqs845wb2swhm5vvbixsxs8yzihc5r7igyalg7"; depends=[survival]; };
+  joint_Cox = derive2 { name="joint.Cox"; version="2.16"; sha256="1qlynvahk57ayndc23i0jr8a702z4k1darf4y5i90lza40f32jhp"; depends=[survival]; };
   jointDiag = derive2 { name="jointDiag"; version="0.3"; sha256="0pra70jcnkqkzrxz5vc6lzi637rp5w8n9wbv9ix718vnd0j3fm3n"; depends=[]; };
   jointNmix = derive2 { name="jointNmix"; version="1.0"; sha256="0ibh7hqkpzlfk3bk4d2dd64jhr8cvw563k082vwnljiam7k5nj4b"; depends=[]; };
   jointPm = derive2 { name="jointPm"; version="2.3.1"; sha256="1c2cn9sqwfyv9ksd63w8rrz0kh18jm2wv2sfdkgncjb7vfs4hbv9"; depends=[]; };
   jointseg = derive2 { name="jointseg"; version="1.0.1"; sha256="0wa531b5shrxhnzflfjqn2wypfb565qc2c8wngysgrgyj1kjq1pl"; depends=[acnr DNAcopy matrixStats]; };
-  jomo = derive2 { name="jomo"; version="2.6-2"; sha256="0zyqwa2y08asj9xqwnngh6da1b9cqcx8pzc9cxwrmgnxd5nnsjb7"; depends=[lme4 survival]; };
+  jomo = derive2 { name="jomo"; version="2.6-4"; sha256="05g2rj9g7rgyb22b0gybw042nydyqsqsb31v05hifzavri8ij01x"; depends=[lme4 MASS ordinal survival]; };
   jose = derive2 { name="jose"; version="0.2"; sha256="0vgmr5kmps6yk10bbzrxz2d3y7jk0w1rxpm9gx510kpnqbj325xz"; depends=[jsonlite openssl]; };
   jpeg = derive2 { name="jpeg"; version="0.1-8"; sha256="05hawv5qcb82ljc1l2nchx1wah8mq2k2kfkhpzyww554ngzbwcnh"; depends=[]; };
   jpmesh = derive2 { name="jpmesh"; version="1.1.1"; sha256="0smfv7wh0441aqx0c0km0kr54lsvqixn2chqvqn5sd3758k5id95"; depends=[leaflet magrittr miniUI purrr rlang sf shiny tibble units]; };
   jpndistrict = derive2 { name="jpndistrict"; version="0.3.2"; sha256="0n935zwxjjnl1w0xd790gm22pdm8ng48x79iazfkjzj8dpwymdsg"; depends=[dplyr jpmesh leaflet magrittr miniUI purrr rlang sf shiny tibble tidyr]; };
-  jqr = derive2 { name="jqr"; version="1.0.0"; sha256="1jdr3wb1fd2zjmmdicqhskgk7xbn5y6998fi9szj86p8smfckl74"; depends=[lazyeval magrittr]; };
+  jqr = derive2 { name="jqr"; version="1.1.0"; sha256="00x5a61bsn2ywzc2haz19f6h0sqhlx7z3k1n9y0729dwm4id89ms"; depends=[lazyeval magrittr]; };
   jrich = derive2 { name="jrich"; version="0.60-35"; sha256="1y486bfqmfg3f22wm0lfk3lh20ljgi8qrgn5jji0f417wh48nf0x"; depends=[ape]; };
   jrvFinance = derive2 { name="jrvFinance"; version="1.4.0"; sha256="09gr8w3y0cjlwjhr72ml05y22m868hnvxwa3mwxdcvfb7nb1dmxz"; depends=[]; };
   js = derive2 { name="js"; version="1.1"; sha256="1xsdr14k4djcd1nqybvfzhviics4igsj8yz3r0j2nqhin2wjynlf"; depends=[V8]; };
   jsTree = derive2 { name="jsTree"; version="1.0.1"; sha256="0n754illyw29bprll676k9qm5vk5h8qss6gb8lls57kdzj51x2jz"; depends=[data_table htmlwidgets jsonlite]; };
+  jsonify = derive2 { name="jsonify"; version="0.1.1"; sha256="0z6af6sxzybm6jy350pn0g16mm3kzwb6vkf3qa6r20ca2rb2kynh"; depends=[rapidjsonr Rcpp]; };
   jsonld = derive2 { name="jsonld"; version="2.0"; sha256="0mplsx2fq7pvxli1rd851cqhkaxk3y93aa46x57yf4z5rgjy34vm"; depends=[curl jsonlite V8]; };
   jsonlite = derive2 { name="jsonlite"; version="1.5"; sha256="00lfg464jhf7k01bal9pcjvbdf5cxk6xi2h46hccp1x3h883g434"; depends=[]; };
+  jsonstat = derive2 { name="jsonstat"; version="0.0.2"; sha256="0p0d3snl1971p5ikrkmwqrjjh4fy0b89qk3rnd1dayfb0r80xnnj"; depends=[cli dplyr jsonlite rlang]; };
   jsonvalidate = derive2 { name="jsonvalidate"; version="1.0.0"; sha256="08c1s8fk95np4l6km077dmd1nibhhggi80f5465hhbq521gm0awl"; depends=[V8]; };
   jsr223 = derive2 { name="jsr223"; version="0.3.2"; sha256="00i90b37811sva8f9bd50xxvjcn7rag9hq5ya953v6whm370r737"; depends=[curl jdx R6 rJava]; };
+  jstor = derive2 { name="jstor"; version="0.3.4"; sha256="1fqnvhisv4kf3anck2zfrkg2g46y78hh3y47xhg79p6gcc2cxx2i"; depends=[cli crayon dplyr furrr magrittr pryr purrr readr rlang stringr tibble tidyr xml2]; };
   jtGWAS = derive2 { name="jtGWAS"; version="1.5.1"; sha256="06cgsncgrqslxcc7s0lb3zwa85bhzkmjzz3f04716xpzwa186vxq"; depends=[Rcpp]; };
-  jtools = derive2 { name="jtools"; version="1.0.0"; sha256="0w0yw0pl2arwx4d5w83d73y7cq9papqkdg6sfk9qj1whgcd28chv"; depends=[cli crayon ggplot2]; };
+  jtools = derive2 { name="jtools"; version="1.1.1"; sha256="0c7ygllgq5vyb4w188l44f5q8bn1jn2kw3yvc1f1zi0ni1ngsf7g"; depends=[cli crayon ggplot2 magrittr]; };
   jtrans = derive2 { name="jtrans"; version="0.2.1"; sha256="18zggqdjzjhjwmsmdhl6kf35w9rdajpc2nffag4rs6134gn81i3m"; depends=[]; };
+  jubilee = derive2 { name="jubilee"; version="0.2.5"; sha256="0j16325vxlr797gr39g6mdrgfas1qvxhajfsrmzr4hflqibw03gk"; depends=[data_table readxl xts yaml zoo]; };
   jug = derive2 { name="jug"; version="0.1.7"; sha256="01m6hyr26f6zih49pz2bmmr8ypdl1qiz0wv3padcy68kaccf44a4"; depends=[base64enc httpuv infuser jsonlite magrittr mime R6 webutils]; };
-  junctions = derive2 { name="junctions"; version="1.0.1"; sha256="1mfzhizfzpsrlc23kdi658a1svw4p3wh1la7zpf5fk2bbksw0v97"; depends=[Rcpp]; };
+  junctions = derive2 { name="junctions"; version="1.1"; sha256="1v5jx4mw6x4q3fivsvidd49b8czzbvv5icj39h6jrpmqvrnc8w32"; depends=[Rcpp]; };
   junr = derive2 { name="junr"; version="0.1.3"; sha256="0wcglpziyi6z4n7w70srziljba3jkb27iqxbxz4kk6774c7valbf"; depends=[httr jsonlite]; };
   jvnVaR = derive2 { name="jvnVaR"; version="1.0"; sha256="0zh0dc6wqlrxn5r2yv9vkpyfb8xsbdidkjv9g6qr94fyxlbs4yci"; depends=[]; };
   jwutil = derive2 { name="jwutil"; version="1.2.1"; sha256="1n9q2p167cmp134p8qpknfg4avi4nzxqmazyr1gs63sk5x51yk48"; depends=[Rcpp testthat]; };
@@ -7793,41 +8135,42 @@ in with self; {
   keep = derive2 { name="keep"; version="1.0"; sha256="12803hhrs9v94rv6qaihk1f1ls7lx4cy2pa30v4p1r2z9afx9bjf"; depends=[]; };
   kehra = derive2 { name="kehra"; version="0.1"; sha256="1cc0bmbg0dncay50ap7cs2516qngzz3ddaab0jk5r6lwfq87h8qx"; depends=[Hmisc raster reshape2 sp stringr xts zoo]; };
   kelvin = derive2 { name="kelvin"; version="2.0-0"; sha256="04xdgpmysksm79m3vqmb4zra3pq09nv99w4fbdla1lmy7z8pkdrk"; depends=[Bessel]; };
-  kendallRandomWalks = derive2 { name="kendallRandomWalks"; version="0.9.2"; sha256="1h02394gq8cmz7bw6k2yg4qjzmns7i6bzafkdw3x9ycf4d9l6p80"; depends=[dplyr EnvStats ggplot2 nleqslv tibble tidyr]; };
+  kendallRandomWalks = derive2 { name="kendallRandomWalks"; version="0.9.4"; sha256="1mfqblvsn9p6gdcnbypfpzk0xzn6bz1ajbrkz2dap5w35dia3kxa"; depends=[actuar dplyr ggplot2 tibble]; };
   kequate = derive2 { name="kequate"; version="1.6.1"; sha256="1rjya1rnlfk2ziiwhkgshlyk3g0388591q3q01a3vgmgsb3cpxl6"; depends=[equateIRT ltm mirt]; };
-  keras = derive2 { name="keras"; version="2.1.6"; sha256="1xgxf9xg8b7dpnbc5dnysd4s2n74877s16f353hrbybf6m768kik"; depends=[magrittr R6 reticulate tensorflow tfruns zeallot]; };
+  keras = derive2 { name="keras"; version="2.2.0"; sha256="0h6rx44c7w0d8gvnchbqfblqmayh47v14vg6ilnfkcb35djws3la"; depends=[magrittr R6 reticulate tensorflow tfruns zeallot]; };
   kerasR = derive2 { name="kerasR"; version="0.6.1"; sha256="1yi7710vgcwz0jhishbga41sc6qyk83a0avmq01dvqjsz3cdfsfc"; depends=[reticulate]; };
-  kerasformula = derive2 { name="kerasformula"; version="1.0.0"; sha256="1hhzrrg4ryajzlih8wj2j0z3wb0ksi5zycaf9njvbd0jvfxxbzdy"; depends=[dplyr keras Matrix]; };
+  kerasformula = derive2 { name="kerasformula"; version="1.5.1"; sha256="1b4mq1y41lz8maszlrm7w907vcz7in8napfnhas7dgal1kid4mcf"; depends=[dplyr ggplot2 keras Matrix]; };
   kerdiest = derive2 { name="kerdiest"; version="1.2"; sha256="16xj2br520ls8vw5qksxq9hqlpxlwmxccfk5balwgk5n2yhjs6r3"; depends=[chron date evir]; };
-  kergp = derive2 { name="kergp"; version="0.2.0"; sha256="1xamj19v84m1f9ls8ac8xbm6airyjf96i1l48yy4l2rvjdmx6m9l"; depends=[doParallel MASS numDeriv Rcpp testthat]; };
+  kergp = derive2 { name="kergp"; version="0.4.0"; sha256="0b5milibiacxmflrbddl6fjkc54cv0q5w8dqpxikx2vly4as9g5z"; depends=[doFuture doParallel MASS nloptr numDeriv Rcpp testthat]; };
   kernDeepStackNet = derive2 { name="kernDeepStackNet"; version="2.0.2"; sha256="04bdggxvggmppp289n2zw6ijdm7y05gws6z7bp6fr8n1zsxy2w3c"; depends=[caret DiceKriging DiceOptim GA GenSA glmnet globalOptTests lhs matrixStats mvtnorm Rcpp RcppEigen]; };
   kerndwd = derive2 { name="kerndwd"; version="2.0.2"; sha256="0nf5hyb274gn02n4lygwryv1jaqff77i040bd8gs1xykgvy6jxny"; depends=[]; };
   kernelFactory = derive2 { name="kernelFactory"; version="0.3.0"; sha256="001kw9k3ivd4drd4mwqapkkk3f4jgljiaprhg2630hmll064s89j"; depends=[AUC genalg kernlab randomForest]; };
   kernelboot = derive2 { name="kernelboot"; version="0.1.5"; sha256="0m31akhya7390lbkw0cjxcrzw28njbz4smd35m93aarb2lgpcj4k"; depends=[future future_apply Rcpp]; };
-  kernlab = derive2 { name="kernlab"; version="0.9-26"; sha256="0xv0slf3ggw3sswsi34416lb1g3h1pqkrr2h7r1n1kvgii3l0jcm"; depends=[]; };
+  kernlab = derive2 { name="kernlab"; version="0.9-27"; sha256="1m0xqf6gyvwayz7w3c83y32ayvnlz0jicj8ijk808zq9sh7dbbgn"; depends=[]; };
   kernplus = derive2 { name="kernplus"; version="0.1.1"; sha256="1dxw1qk5gx7g05kgsbh5436r7mbv77631zjs0c4ibpscaw77g475"; depends=[circular KernSmooth mixtools]; };
   kernscr = derive2 { name="kernscr"; version="1.0.3"; sha256="0h3xv76dxch8kv4z7cgx60iaikk6906n75c4kc1mccpw0jvyxrvb"; depends=[MASS mvtnorm]; };
   kexpmv = derive2 { name="kexpmv"; version="0.0.3"; sha256="1nx2bpyc06vlr78nhig4zaaygphjp4wqsz9jzhs4qx8wy3kh7rmy"; depends=[Rcpp SparseM]; };
   keyholder = derive2 { name="keyholder"; version="0.1.2"; sha256="157k39acn8732g0ha9m402v5hhqnc34qpghvhg430dga2r5g3cxh"; depends=[dplyr rlang]; };
   keyplayer = derive2 { name="keyplayer"; version="1.0.3"; sha256="0j4n46r9ivkbzqz8g22dq2bpmx7bs05yb5qp27p9jnfh5x19v2ds"; depends=[igraph matpow sna]; };
   keypress = derive2 { name="keypress"; version="1.1.1"; sha256="0w8hcxxx47zyz2cbz2s8va2rfb6s2ziw9ck1slq9kh3aqsx3i9g0"; depends=[]; };
-  keyring = derive2 { name="keyring"; version="1.0.0"; sha256="0asa62cgs08k0g0yhvsxr2k8rfxy3hqkd4hrv0396394v13b08w5"; depends=[assertthat getPass openssl R6]; };
+  keyring = derive2 { name="keyring"; version="1.1.0"; sha256="1hpfd4hbx43i39l995rg86kfxi7wlyla1gv8mwcdr4xx7z122zzq"; depends=[assertthat filelock getPass openssl R6 rappdirs sodium yaml]; };
   keyringr = derive2 { name="keyringr"; version="0.4.0"; sha256="04f0z6mqj75l5qhiab0zvjsvz3jz1bp6dfazkpgihjmls5k11dnh"; depends=[stringr]; };
   kfda = derive2 { name="kfda"; version="1.0.0"; sha256="0861hzry55gj8ykdd8cwil1wb7234pkmipp4v1749fpmzggq1xgi"; depends=[kernlab MASS]; };
   kfigr = derive2 { name="kfigr"; version="1.2"; sha256="0hmfh4a95883p1a63lnziw8l9f2g0fn0xzxzh36x9qd9nm7ypmkw"; depends=[knitr]; };
   kgc = derive2 { name="kgc"; version="1.0.0.2"; sha256="14zbcimnglh5jj07dcaxp1dfjaz8syswy29nf8z39qmslv1hg9kk"; depends=[plyr shiny shinythemes]; };
   kgschart = derive2 { name="kgschart"; version="1.3.5"; sha256="1gdsrmnv8z99cldvig7grlq8gsbv3wpx7zdamw85lz563n4ln94d"; depends=[abind deepnet ggplot2 gridExtra magrittr matrixStats nnet png shiny stringr]; };
-  kidney_epi = derive2 { name="kidney.epi"; version="1.0.0"; sha256="1n264l2snbmx72hp67gzkwwzkmivi1f4nddh3zhxvy028y47w643"; depends=[]; };
+  khroma = derive2 { name="khroma"; version="1.0.0"; sha256="0bws0p5gyla7vlplayqqjl7rygwk5jz3dwbk0rlz38hcafrlzh1l"; depends=[]; };
+  kidney_epi = derive2 { name="kidney.epi"; version="1.1.0"; sha256="191yrqdviwvfl62c62qqfa154hglxpfwcxllhgwlm8nsysg46z5i"; depends=[]; };
   kimisc = derive2 { name="kimisc"; version="0.4"; sha256="0nbjspbq9akhmamfdn192p5b6ki7xqhp422ih6v77xsnrhl5m24z"; depends=[memoise plyr pryr]; };
   kin_cohort = derive2 { name="kin.cohort"; version="0.7"; sha256="0wijsjz0piz5j9rm2nr3d5dfpiyba740mbfbkmfll9pz72s58wz8"; depends=[survival]; };
   kineticF = derive2 { name="kineticF"; version="1.0"; sha256="1k54zikgva9fw9c4vhkc9b0kv8sq5pmc962s8wxr6qv97liv9p46"; depends=[circular lqmm MASS plotrix sp splancs]; };
   kinfit = derive2 { name="kinfit"; version="1.1.14"; sha256="0gb43pghgllb9gzh8jzzpfmc46snv02ln4g3yqsdah3cyqnck0ih"; depends=[]; };
   kinship2 = derive2 { name="kinship2"; version="1.6.4"; sha256="19r3y5as83nzk922hi4fkpp86gbqxdg1bgng798g1b073bp6m9yj"; depends=[Matrix quadprog]; };
-  kirby21_base = derive2 { name="kirby21.base"; version="1.6.0"; sha256="1l9ynmkh27m6c3862j7xqiydanknd1zplqvsay5amh7k13isj9gg"; depends=[git2r]; };
-  kirby21_fmri = derive2 { name="kirby21.fmri"; version="1.6.0"; sha256="15dhb7d2xrka55gg4f1n74dysj74c4fv9hpdx2n1vc79n90zl6yr"; depends=[kirby21_base]; };
-  kirby21_t1 = derive2 { name="kirby21.t1"; version="1.6.0"; sha256="0zanqmndm15fld31g7zpam3y3z63aw1sgk74ya2l95cn21ln34a3"; depends=[kirby21_base]; };
+  kirby21_base = derive2 { name="kirby21.base"; version="1.7.0"; sha256="0drm9h1f91yb75v9jzcaysj2cijcana949xvq8bgkqklmf9zwfl5"; depends=[git2r]; };
+  kirby21_fmri = derive2 { name="kirby21.fmri"; version="1.7.0"; sha256="1z2l6bn53mwkll9ki4169lqlz6wcfp29xzdrqyw606j2xrs4wc22"; depends=[kirby21_base]; };
+  kirby21_t1 = derive2 { name="kirby21.t1"; version="1.7.0"; sha256="0bv8rrk9jh02h3gill1g2w246j4zv98cjchz7i2c092lvqps8szs"; depends=[kirby21_base]; };
   kissmig = derive2 { name="kissmig"; version="1.0-3"; sha256="1pi1x3gdbqrhr1km1hqj15k8wyrgs697fnxgjgxga1irbn8bi482"; depends=[raster]; };
-  kitagawa = derive2 { name="kitagawa"; version="2.1-0"; sha256="1ddyd0rwwmdpbq823qass5dlp2lvi9d64wpl61ik6fghms2p9ryr"; depends=[kelvin]; };
+  kitagawa = derive2 { name="kitagawa"; version="2.2-2"; sha256="0hl2l42jz4wkcx94cqycw8zb3ffg72fp2f310sh5icrcnyw43bmp"; depends=[kelvin]; };
   kknn = derive2 { name="kknn"; version="1.3.1"; sha256="1nzkg3dxaiqp87p56wm895qx5xn86hv5hjr73qvl1yiaxiq0x112"; depends=[igraph Matrix]; };
   klaR = derive2 { name="klaR"; version="0.6-14"; sha256="1g995df6286sd64nw7q9bihzkqhrasks45n8xk678y57kcadksai"; depends=[combinat MASS questionr]; };
   klausuR = derive2 { name="klausuR"; version="0.12-10"; sha256="12fjs4dnwaki8sz718xgsg8qrqhsgf87cs0bylf0p3f5k8hrmk4b"; depends=[polycor psychometric xtable]; };
@@ -7835,7 +8178,7 @@ in with self; {
   km_ci = derive2 { name="km.ci"; version="0.5-2"; sha256="1l6kw8jppaa1802yc5pbfwwgac56nhwc9p076ivylhms4w7cdf8v"; depends=[survival]; };
   kmconfband = derive2 { name="kmconfband"; version="0.1"; sha256="10n5w8k57faqcclwshs4m66i2i5b70i6f3xq5nqlgsi2ldkysbc9"; depends=[survival]; };
   kmcudaR = derive2 { name="kmcudaR"; version="1.0.0"; sha256="1adixf4nsgnk8rgvcv37aznh8gxrfwn19ihh3c6siss51hlmhln2"; depends=[Rcpp RcppEigen]; };
-  kmed = derive2 { name="kmed"; version="0.0.1"; sha256="0vcks4n0dpfd5cl5b8mhvhw6r2f3y12jn3d3j3dkj2grxmb9lh4c"; depends=[ggplot2]; };
+  kmed = derive2 { name="kmed"; version="0.1.0"; sha256="1sqcrl75hjxpvaz1m40h7z3xzxkda8mnmq90jd6igvpbznixq2yc"; depends=[ggplot2]; };
   kmer = derive2 { name="kmer"; version="1.1.0"; sha256="0c96rz75qggqfb0zccn0v92jx9ws2nlw8pk6j5jghllcgm99qbdc"; depends=[openssl phylogram Rcpp]; };
   kmi = derive2 { name="kmi"; version="0.5.4"; sha256="07h4gn69r4zxm00alj74fd0qdyp7g9x38gpi1v7yzy806wlg93fr"; depends=[mitools survival]; };
   kml = derive2 { name="kml"; version="2.4.1"; sha256="1my9gcripiqc6iphycjr3srj8qxy05yvd0648vblygrx2qym5hy2"; depends=[clv longitudinalData]; };
@@ -7852,51 +8195,53 @@ in with self; {
   knnIndep = derive2 { name="knnIndep"; version="2.0"; sha256="1fwkldgs2994svf3sj90pwsfx6r22cwwa22b30hdmd24l8v9kzn7"; depends=[]; };
   knncat = derive2 { name="knncat"; version="1.2.2"; sha256="1d392910y3yy46j8my1a7m0xkij2rc6vwq5fg22qk00vqli8drz2"; depends=[]; };
   knnp = derive2 { name="knnp"; version="1.0.0"; sha256="038bl834zjmwdhfh5skhsjk2jqizx285g1w4y7ji9h0h03akn5nd"; depends=[doParallel foreach forecast parallelDist]; };
-  knockoff = derive2 { name="knockoff"; version="0.3.0"; sha256="0irqbidp00rh07xsfyyv5d3ksa4fn9vv49rsy8ah2gb9y41iy046"; depends=[corpcor glmnet gtools Matrix Rdsdp RSpectra]; };
-  knor = derive2 { name="knor"; version="0.0-5"; sha256="19wjrcmfam1ck5vbidksmy923d5p5llikjxn0v248vzfz96ia1yc"; depends=[Rcpp]; };
+  knockoff = derive2 { name="knockoff"; version="0.3.2"; sha256="1ky69f3hwwgy2il097mx0z7aakxsq692g9ink8z8cb4wnrp4bk07"; depends=[corpcor glmnet gtools Matrix Rdsdp RSpectra]; };
+  knor = derive2 { name="knor"; version="0.0-6"; sha256="0mri7lw6jwkksyxidyqm2xrkjh1vd6dylxd24gd18j9blf342p7d"; depends=[Rcpp]; };
   knotR = derive2 { name="knotR"; version="1.0-2"; sha256="0kd1b9wibpwyaanz9ny61qgfvcg4d3rzpy05sfshlpp0b1y8d3xj"; depends=[]; };
   kntnr = derive2 { name="kntnr"; version="0.4.1"; sha256="0d78mgmz2yhfbf4m5jaa28aazaw2wf9vf1vxl53wrnpy0hxw329y"; depends=[base64enc dplyr httr jsonlite lazyeval lubridate purrr rstudioapi stringr tibble]; };
-  koRpus = derive2 { name="koRpus"; version="0.10-2"; sha256="1ykaky10zkj76w44fhk6kb6dqz1pgncmdnz4r2amcm08a8h96gsr"; depends=[data_table]; };
+  koRpus = derive2 { name="koRpus"; version="0.11-5"; sha256="053882fnz6c7yjiz72jg6sawd9q57h110nd4yjay65piadi9mci5"; depends=[data_table sylly]; };
   koRpus_lang_en = derive2 { name="koRpus.lang.en"; version="0.1-2"; sha256="0v3cjzcpa24n479xi2lkj3yhjrgbd14iq9rz1bvywbj3shixs0bn"; depends=[koRpus sylly_en]; };
-  kofdata = derive2 { name="kofdata"; version="0.1.3.1"; sha256="1sys4ymh0ja2zb14k6hq455563np7n8jzmgakkjdghfi38lxndam"; depends=[httr jsonlite xts zoo]; };
+  kofdata = derive2 { name="kofdata"; version="0.1.3.2"; sha256="0s7y1djmiz598bx0ppabb5pc1cssaavr67yf4zk9aai90xs2p2v1"; depends=[httr jsonlite xts zoo]; };
   kofnGA = derive2 { name="kofnGA"; version="1.2"; sha256="1j4gx6pkmasgbgcdlg6i5nzfrmim61c2hw34k5zfmwfbkrsgb575"; depends=[]; };
-  kohonen = derive2 { name="kohonen"; version="3.0.5"; sha256="110ckinwzgv8b6g1cj0k0vva19abi44psf9vmqifs3450v90bq8z"; depends=[MASS Rcpp]; };
+  kohonen = derive2 { name="kohonen"; version="3.0.6"; sha256="0b1039j69v43ppyczwpagriiv669gnxh3s40dhjq0mb3a6fxrpcb"; depends=[MASS Rcpp]; };
   kokudosuuchi = derive2 { name="kokudosuuchi"; version="0.4.2"; sha256="1nwydfyr9waa5h8h8nrmwxy0jx7i4893g5khfv6b4g09z6g5cyly"; depends=[curl dplyr glue httr purrr rlang sf shiny stringr tibble xml2]; };
   kolmim = derive2 { name="kolmim"; version="1.0"; sha256="0g1i0cazi4nhfwdd3ywqrar1sn7bw77w38qjii045w5vqg05srkp"; depends=[]; };
   komadown = derive2 { name="komadown"; version="0.2.0"; sha256="0mw1bcrg10yy1y844lpik70979420h0nsar48v5p3qk783pymbdp"; depends=[bookdown rmarkdown]; };
-  komaletter = derive2 { name="komaletter"; version="0.2.0"; sha256="17xkc22ci2gqypcfs1yhyzfmpsh8bmjbw6yms27cbqg4m4jdgm9v"; depends=[rmarkdown]; };
+  komaletter = derive2 { name="komaletter"; version="0.3.0"; sha256="09yvb8ijm1s5d89mrl8j56n8x8q1lq2siprw8191ys3jidmk6ha7"; depends=[rmarkdown]; };
   konfound = derive2 { name="konfound"; version="0.1.0"; sha256="1w85gsms061d5hik3bc7x5gc7cp6c9h8l8q8q60isj1r0n60a81s"; depends=[broom dplyr ggplot2 margins pbkrtest purrr rlang tidyr]; };
   kpcalg = derive2 { name="kpcalg"; version="1.0.1"; sha256="1gd5bisyfwb12l9jmwhi2arlxrabc01vgv4m1qqs23vybsd6yh52"; depends=[energy graph kernlab mgcv pcalg RSpectra]; };
   kpeaks = derive2 { name="kpeaks"; version="0.1.0"; sha256="1qxpncwyshv35h1190py6a69mljabfcjjs7v17a2rb5asahy3rk8"; depends=[]; };
   kpmt = derive2 { name="kpmt"; version="0.1.0"; sha256="15d26khc0v3kc1c7l1avqp48pfqmc6xj32029mv7myivr41ashk3"; depends=[matrixStats]; };
   kpodclustr = derive2 { name="kpodclustr"; version="1.0"; sha256="1fywgdj4q3kg8y9lwnj6vxg9cwgs5ccwj6m3knfgg92f8ghnsbsw"; depends=[clues]; };
   kriens = derive2 { name="kriens"; version="0.1"; sha256="1qi65k9fsbbkbw0w40rv60p5ygrvr10rmlyxdaqa5bdpcmrbly5z"; depends=[]; };
+  krige = derive2 { name="krige"; version="0.1-1"; sha256="0r52i29k5835r99vip1b0xxsqdg71m7zlbgq5002iav1ig6l7k71"; depends=[MASS mvtnorm]; };
   kriging = derive2 { name="kriging"; version="1.1"; sha256="04bxr34grf2nlrwvgrlh84pz7yi0r8y7dc2wk0v5h5z6yf5a085w"; depends=[]; };
-  krm = derive2 { name="krm"; version="2018.1-24"; sha256="0qysv61vjdz8674hn6mk0913dkm2bfkqmr7cybls9z9h4i068vdk"; depends=[kyotil]; };
-  ks = derive2 { name="ks"; version="1.11.2"; sha256="0q99b6jv61cni5fgxvygbg8hs4fyhdmbgdzwgny7mrp1jr84izcx"; depends=[FNN kernlab KernSmooth Matrix mclust mgcv multicool mvtnorm]; };
+  krm = derive2 { name="krm"; version="2018.8-17"; sha256="0d4isfzhlz9kxq0sbb1m60wnvcnlqzz8d45hiikgf1dfbngkyh2a"; depends=[kyotil]; };
+  ks = derive2 { name="ks"; version="1.11.3"; sha256="0z749c3xzpf6n0g7xcfplrhap1di8k7kcfr7vigh95ywnigyhs8d"; depends=[FNN kernlab KernSmooth Matrix mclust mgcv multicool mvtnorm]; };
   kscons = derive2 { name="kscons"; version="0.7.0"; sha256="1i4dp56y9swl5s6cipqlm5i5fknz2v0yz5g930cl5i8kx91rxwrp"; depends=[]; };
   kselection = derive2 { name="kselection"; version="0.2.0"; sha256="1arg96r2pldvb89rfqnfpjxwksyac2mhmbimbkwzm7wrnbnrcn5d"; depends=[]; };
   ksrlive = derive2 { name="ksrlive"; version="1.0"; sha256="1zd3ggzgjks0jay69s5m7ihbd7v7zha6ssj2m9ahnyp00ghpk83j"; depends=[tightClust]; };
-  kst = derive2 { name="kst"; version="0.4-0"; sha256="1vqkriqhzdzs3kldjqgl15sm25lbfqzisglk2r96rjgxbj8k59w7"; depends=[proxy relations sets]; };
-  kstIO = derive2 { name="kstIO"; version="0.1-0"; sha256="04s8lyg7622zcq947qlx5brwf1an7icg94i5di8vwjp7d8zgczq6"; depends=[MASS pks sets stringr]; };
+  kst = derive2 { name="kst"; version="0.5-0"; sha256="05vq23j9q4q1nh9s92z303pwma0mh0b7h64aha3xvilfs3sbhvwq"; depends=[proxy relations sets]; };
+  kstIO = derive2 { name="kstIO"; version="0.2-0"; sha256="01p6krb945m5jy57k479szic4yb7bap020mz1imlnsnmbnrycpx6"; depends=[MASS pks sets stringr]; };
+  kstMatrix = derive2 { name="kstMatrix"; version="0.1-0"; sha256="0c8nb6cc4ng6gc21bhnj8in7rcjnsbncb3c8k70q3w340apwv2pm"; depends=[]; };
   ktsolve = derive2 { name="ktsolve"; version="1.1"; sha256="0b5myr093v3qaj9gzbw1w728i5ij418whxxpicj51w657dcy647k"; depends=[]; };
   ktspair = derive2 { name="ktspair"; version="1.0"; sha256="1v63982jidxlcf2syahcb29myv34kc790l7lwyfxx9l50ssb812n"; depends=[Biobase]; };
   kulife = derive2 { name="kulife"; version="0.1-14"; sha256="070ayy6fr9nsncjjljikn2i5sp2cx3xjjqyc64y2992yx74jgvvd"; depends=[]; };
   kutils = derive2 { name="kutils"; version="1.45"; sha256="0qx40d5nk8q0kv09l73bcn7dbch89b9zi8yp75v39vcy4qxdnc2b"; depends=[foreign lavaan openxlsx plyr RUnit xtable]; };
   kvh = derive2 { name="kvh"; version="1.3"; sha256="0dhdvka7sdh7qcq5cz5xsv8dbxr1lr4n7wf033smsz4nvwgjixr3"; depends=[Rcpp]; };
   kwb_hantush = derive2 { name="kwb.hantush"; version="0.2.1"; sha256="0rjnhhzvjhhl0r2ixz9vkgnqkrnnk772253zy7xkpadj7ws69jsf"; depends=[hydroGOF lattice]; };
-  kyotil = derive2 { name="kyotil"; version="2017.12-27"; sha256="0xd64xg3nj0pj0ziycq4ndpl8kwxfng96ag8zmqzzxk85zw2vyq3"; depends=[]; };
-  kza = derive2 { name="kza"; version="4.0.0"; sha256="0yfn6ijbskdkcgbgk4fwhgiiy34cw9k9vy1psi779mqd9kyjf56j"; depends=[]; };
+  kyotil = derive2 { name="kyotil"; version="2018.10-17"; sha256="12rrr7ynjwhcskjkfkv11q5xpdfn9j27vmnsd0r0vc2w2b25217k"; depends=[]; };
+  kza = derive2 { name="kza"; version="4.1.0"; sha256="128r4xmqxy1i1svcmv8786qqmriyqygd8d49cp53x8gb56k011xa"; depends=[]; };
   kzfs = derive2 { name="kzfs"; version="1.5.0.1"; sha256="0gd945x1ppdw15iqcn5ijzmh07hs7zg8rjb85231bcqbh98djvfm"; depends=[digest kzft]; };
   kzft = derive2 { name="kzft"; version="0.17"; sha256="1y6almhs1x21cr4bbf5fj3mnhp65ivzs869660cyg70sva853sv7"; depends=[polynom]; };
   kzs = derive2 { name="kzs"; version="1.4"; sha256="1srffwfg0ps8zx0c6hs2rc2y2p01qjl5g1ypqsbhq88vkcppx1w9"; depends=[lattice]; };
   l0ara = derive2 { name="l0ara"; version="0.1.5"; sha256="15qajzpvqnikg9k199cqvwp9qbrxx4zr9lsvyad96pa9qr156gvb"; depends=[Rcpp RcppArmadillo]; };
   l1kdeconv = derive2 { name="l1kdeconv"; version="1.2.0"; sha256="1mk92sz9nsmxsn7yplhfcz07k022lrr61114ckrmm0x8hfd89zj8"; depends=[ggplot2 mixtools]; };
   l2boost = derive2 { name="l2boost"; version="1.0.1"; sha256="0f2gapzpvjnr8n1jgn60jpmcas4s8nk2q8q4k5v4ypwvpfqp7kk1"; depends=[MASS]; };
-  laGP = derive2 { name="laGP"; version="1.5-1"; sha256="0sqzvz78p50afp892p7ghy4fmy9p3a2ik51bzzwrx6r96ax7w971"; depends=[tgp]; };
+  laGP = derive2 { name="laGP"; version="1.5-2"; sha256="1gpvp07m3ixhsvvcx0px9wx2f603zbsj4cqrx8w1azwrms5y2qj4"; depends=[tgp]; };
   labdsv = derive2 { name="labdsv"; version="1.8-0"; sha256="0rbf7cswnj534jdi5hfaai12nbxj6l96f02c73ynraqvdqxb1bnz"; depends=[cluster MASS mgcv]; };
   label_switching = derive2 { name="label.switching"; version="1.7"; sha256="1p4cgqf79zppvzrhh5gcxnm7f8qj03fzfmjx43mjhsr1vqig4c78"; depends=[combinat lpSolve]; };
-  labelVector = derive2 { name="labelVector"; version="0.0.1"; sha256="0iwk8p3m2g6732q2pilwr3wlaiys15khd54r0vxsp2irlw77lzrg"; depends=[]; };
+  labelVector = derive2 { name="labelVector"; version="0.1.0"; sha256="08ydgmvks09hbln10zmqxv9hxgiha0n9w5cgych9bnkqdca74gah"; depends=[]; };
   labeledLoop = derive2 { name="labeledLoop"; version="0.1"; sha256="0gq392h0sab8k7k8bzx6m7z5xpdsflldhwbpdf92zbmkbzxsz00m"; depends=[]; };
   labeling = derive2 { name="labeling"; version="0.3"; sha256="13sk7zrrrzry6ky1bp8mmnzcl9jhvkig8j4id9nny7z993mnk00d"; depends=[]; };
   labelled = derive2 { name="labelled"; version="1.1.0"; sha256="0w1zc4w2lkhyldwqyc0drfdn251kjz94jv9p0sn6b034vcifq7ia"; depends=[dplyr haven]; };
@@ -7906,23 +8251,25 @@ in with self; {
   lacm = derive2 { name="lacm"; version="0.0.3"; sha256="0qhvffiw2bcpnv6l4y4h12ss59yc2j0hwsg2nr4a7w4nh6yk9fwc"; depends=[numDeriv statmod]; };
   laeken = derive2 { name="laeken"; version="0.4.6"; sha256="1rhkv1kk508pwln1d325iq4fink2ncssps0ypxi52j9d7wk78la6"; depends=[boot MASS]; };
   laercio = derive2 { name="laercio"; version="1.0-1"; sha256="0la6fxv5k9zq4pyn8dxjiayx3vs9ksm9c6qg4mnyr9vs12z53imm"; depends=[]; };
-  lagged = derive2 { name="lagged"; version="0.1-1"; sha256="062a9hrnp2bsahsdasml0wzqpapyslfiwy9q2mvwqsl6j2pqkk0s"; depends=[]; };
+  lagged = derive2 { name="lagged"; version="0.2-0"; sha256="053wv4z1859v4j00x6l707v6w5zdyk3r1a6naxs601607yn27n5h"; depends=[]; };
   lagsarlmtree = derive2 { name="lagsarlmtree"; version="1.0-0"; sha256="0nrrr2n2q228d1c7qrhcnczmr374i56p7kr868yl19g8ddd3gx3w"; depends=[Formula partykit spdep]; };
   lakemorpho = derive2 { name="lakemorpho"; version="1.1.1"; sha256="0asrp9rvyi5ykxw922qx25rgxvyc9mh4sc7qkbpwzqw8xvgpad2z"; depends=[cluster geosphere raster rgdal rgeos sp]; };
   laketemps = derive2 { name="laketemps"; version="0.5.1"; sha256="04742r379bzgbfr4243wwkb26cvfmnw50jzgygq7vblq00grzska"; depends=[dplyr reshape2]; };
   lamW = derive2 { name="lamW"; version="1.3.0"; sha256="00qa1sxyqb2r7f9yidg43cq2v1285f45xpm3z928jpi424mpg0fc"; depends=[Rcpp RcppParallel]; };
   lambda_r = derive2 { name="lambda.r"; version="1.2.3"; sha256="0cc6pszs6yccn0hgjpyn9gspv9aiva9d91ba0640i5m0l5xy7n0c"; depends=[formatR]; };
   lambda_tools = derive2 { name="lambda.tools"; version="1.0.9"; sha256="1wslxxh6rxny3n06y16dqwpczi3k42vrq4pbwwshl6kzhl56r45b"; depends=[lambda_r]; };
+  lamme = derive2 { name="lamme"; version="0.0.1"; sha256="1x9jl79iqikpjixajly1k8w2nkzskns2m0v242giknl0ikw298h1"; depends=[]; };
   landest = derive2 { name="landest"; version="1.0"; sha256="1lp5sfqk0n7i23fmwjgzsabml1fsji1h9xq5khxzaz1bzqv1s08g"; depends=[survival]; };
   landpred = derive2 { name="landpred"; version="1.0"; sha256="1bl17xkx18i8i7arccnjmxvhjn4yiy7w64hg4n0xmhk8pg0l3mrg"; depends=[survival]; };
   landsat = derive2 { name="landsat"; version="1.0.8"; sha256="07zvj1yyryxk7rwgcrf1kl32p2karkkqz6xrnwy1096dg9iw2js7"; depends=[lmodel2 mgcv rgdal sp]; };
   landsat8 = derive2 { name="landsat8"; version="0.1-10"; sha256="169b5ka98ka9chbmksz6syaygc9wgl8i2gz1h2xkxj3lk9jcg01r"; depends=[rgdal sp]; };
   landscapeR = derive2 { name="landscapeR"; version="1.2"; sha256="1zm5mj861ycbc2m28yjqnkifx8grc4l718mf8r422m78jfakvcjy"; depends=[raster Rcpp]; };
-  landscapetools = derive2 { name="landscapetools"; version="0.3.0"; sha256="0ssrqcac3x8fca0vx63nzzac38kx8vlbffkzahmag24c6b1y6dzq"; depends=[checkmate dplyr extrafont ggplot2 magrittr purrr raster rasterVis tibble tidyr viridis]; };
+  landscapemetrics = derive2 { name="landscapemetrics"; version="0.2"; sha256="1blriglh2kplcndcrgyxw6llhffxy2lbra8brpji6ma7552nb4xl"; depends=[dplyr ggplot2 raster Rcpp RcppArmadillo sp tibble]; };
+  landscapetools = derive2 { name="landscapetools"; version="0.4.0"; sha256="191fgb0in2vz8drfm59g5cddka1yxi4l37zpiprj9ay1hdg8rc0s"; depends=[checkmate dplyr extrafont ggplot2 magrittr purrr raster rasterVis tibble tidyr viridis]; };
   landsepi = derive2 { name="landsepi"; version="0.0.4"; sha256="0b162vdgrd1v93bm5dc5r4nzpcm3cq5iy8v3f2axpx1fk378aaar"; depends=[fields maptools MASS Matrix Rcpp rgdal rgeos sf sp splancs]; };
   languageR = derive2 { name="languageR"; version="1.4.1"; sha256="0grkhdjz9dcrgq6qwv7wpwmckn3mfv022c5wrx29b1dxafd0qzm0"; depends=[]; };
   languagelayeR = derive2 { name="languagelayeR"; version="1.2.3"; sha256="1sh3k8xw88pm93wmpy1qi44i8pv5b5g6ajzas36bdi1bqm8cqzax"; depends=[attempt curl httr rjson]; };
-  languageserver = derive2 { name="languageserver"; version="0.2.3"; sha256="1rjdmnfgf6nj03ddsak56y6gii8kj2vayri2l26hg1n0ap99z1bs"; depends=[callr jsonlite lintr R6 repr stringr styler]; };
+  languageserver = derive2 { name="languageserver"; version="0.2.5"; sha256="07j0s5s689szasvh4h5hn2250yfly35gjv88g7ggzy71i9vw0cdv"; depends=[callr collections desc jsonlite lintr R6 repr stringr styler]; };
   lans2r = derive2 { name="lans2r"; version="1.0.5"; sha256="1m3hz85gl9m4vafdy7mj3z560d11mdwlwvnzy8n7d1cjqryn7a2b"; depends=[dplyr ggplot2 lazyeval R_matlab reshape2 tidyr]; };
   lar = derive2 { name="lar"; version="0.1-2"; sha256="0qda0y4ag10kg83wxs3z754kc8c1dg2rwciy64klk7an4ln43i5b"; depends=[data_table treemap xlsx]; };
   largeList = derive2 { name="largeList"; version="0.3.1"; sha256="0csijzlxajj0rh24w5n7fs6ss301zr6zfv5khyq4a9g437bwhc2i"; depends=[]; };
@@ -7932,31 +8279,32 @@ in with self; {
   lassoscore = derive2 { name="lassoscore"; version="0.6"; sha256="1i3i07da8sw9w47rcflhylz8zxvzkyycbc1a4gf6hbcpp21rqd7d"; depends=[glasso glmnet Matrix]; };
   lassoshooting = derive2 { name="lassoshooting"; version="0.1.5-1"; sha256="0ixjw8akplcfbzwyry9p4bhbcm128yghz2bjf9yr8np6qrn5ym22"; depends=[]; };
   latdiag = derive2 { name="latdiag"; version="0.2-4"; sha256="051chvky3hlfr4hwm9qickl6aaxwnxa88zksmzczqfspby771hq6"; depends=[]; };
-  latentnet = derive2 { name="latentnet"; version="2.8.0"; sha256="05r7hzj5i7rgpxl798lwi2m62l1qkl5zdza0q2awcd5ydkgj34hp"; depends=[abind coda ergm MASS mvtnorm network sna statnet_common]; };
-  later = derive2 { name="later"; version="0.7.3"; sha256="04j2phymxgkk4hv9pfa5w3s98w5d7fvm11blrdhxmray4n618msw"; depends=[BH Rcpp rlang]; };
+  latentnet = derive2 { name="latentnet"; version="2.9.0"; sha256="0gmv4h6zijhgypkasr1y45lx7ksfhfpdgrqqxan4qnxfqp3kxbrr"; depends=[abind coda ergm MASS mvtnorm network sna statnet_common]; };
+  later = derive2 { name="later"; version="0.7.5"; sha256="0xhwn37makzm85zb6w5acc7svzibxcnz69rks0kxw22vapkxwz1i"; depends=[BH Rcpp rlang]; };
   latex2exp = derive2 { name="latex2exp"; version="0.4.0"; sha256="12nbcgfmv13k6sc6m326ras9bcvy380b7rxcxphn06r3cfkby0zw"; depends=[magrittr stringr]; };
-  latexpdf = derive2 { name="latexpdf"; version="0.1.3"; sha256="1zsdz3nvhifxbhp69nigq1crgm39g6gmc8xl5akp5jdidmzyrh84"; depends=[]; };
+  latexpdf = derive2 { name="latexpdf"; version="0.1.6"; sha256="07g33z5lyxinlrzpk6pd41m4c4bbfql611yqcqxasf8wra9bb0jr"; depends=[]; };
   lattice = derive2 { name="lattice"; version="0.20-35"; sha256="0pcnmaz3lr62ly0dcy5hnnqxshc4yqd43hrvlz3almgc9l7sna88"; depends=[]; };
-  latticeDensity = derive2 { name="latticeDensity"; version="1.0.7"; sha256="1y33p8hfmpzn8zl4a6zxg1q3zx912nhqlilca6kl5q156zi0sv3d"; depends=[spam spatstat spdep splancs]; };
+  latticeDensity = derive2 { name="latticeDensity"; version="1.1.0"; sha256="0amxkdf240pgqaydkfvmv1mgsl17jv57938sl96clw1bzd4ilnld"; depends=[sp spam spatstat spdep splancs]; };
   latticeExtra = derive2 { name="latticeExtra"; version="0.6-28"; sha256="1hkyqsa7klk5glj9y1hg3rxr5qilqw8h0017zc4c3nps7lr9a1kq"; depends=[lattice RColorBrewer]; };
-  lava = derive2 { name="lava"; version="1.6.2"; sha256="1r47pps39cgvxhg1s0bqknf4jl91pbb0c76q5icxivhwb172fqcm"; depends=[numDeriv SQUAREM survival]; };
+  lava = derive2 { name="lava"; version="1.6.3"; sha256="0cayjspry3r2lcbvl77v5v52b2zarri3b8xsf87pw5a3jn9anxcf"; depends=[numDeriv SQUAREM survival]; };
   lava_tobit = derive2 { name="lava.tobit"; version="0.5"; sha256="15dlcjgnvrpdxymcwf4rvk72ssr650dy1ayp50zlrp2va0p6h4kw"; depends=[lava mets mvtnorm survival]; };
-  lavaSearch2 = derive2 { name="lavaSearch2"; version="1.3.3"; sha256="08h9nfbjbq6l5drmq07js2b6ylv29wfrddqdlpsnysi99sj8i8aq"; depends=[ggplot2 lava MASS Matrix multcomp mvtnorm nlme reshape2 sandwich]; };
-  lavaan = derive2 { name="lavaan"; version="0.6-1"; sha256="0k0mm66i5xfb06rc7b6is16nn7k2limas5mhlr9d5nwbqz87g4i2"; depends=[MASS mnormt numDeriv pbivnorm]; };
+  lavaSearch2 = derive2 { name="lavaSearch2"; version="1.4"; sha256="0mr3vranmsrd9acr16gryib89dn2x19wwwd4wx3dgwwby18mc5j3"; depends=[doParallel ggplot2 lava MASS Matrix multcomp mvtnorm nlme reshape2 sandwich]; };
+  lavaan = derive2 { name="lavaan"; version="0.6-3"; sha256="0hw856kv11zqn6nd4216rh19i6xbnc1rh044r7jvvxkhzgbqkyxz"; depends=[MASS mnormt numDeriv pbivnorm]; };
   lavaan_shiny = derive2 { name="lavaan.shiny"; version="1.2"; sha256="0qgswdpxb5af0l3v70sg0jrgsdwr88gz6zzwbk3pw5x6qnvnwb6r"; depends=[lavaan psych semPlot shiny shinyAce]; };
   lavaan_survey = derive2 { name="lavaan.survey"; version="1.1.3.1"; sha256="133hpy8s00y6jzwwzl9brdh70w26jycdm3n1c6bcryghwh3ai4xr"; depends=[lavaan MASS survey]; };
   lavaanPlot = derive2 { name="lavaanPlot"; version="0.5.1"; sha256="01bx1snd3zhc8dmq0f407qhw2d00f6d38qpr791qc1mq5kr3d8qj"; depends=[DiagrammeR lavaan stringr]; };
   lawn = derive2 { name="lawn"; version="0.4.2"; sha256="17nj88n5xzhjkwm0hi8g9h5a3nclvkq3k1pv3690ph14g4l9lgcj"; depends=[jsonlite magrittr V8]; };
   lawstat = derive2 { name="lawstat"; version="3.2"; sha256="03ppzyx3x6vx1n2k5l8gl9j2q2mnqa1im5smxnrlncan7yzjy7sf"; depends=[Kendall mvtnorm VGAM]; };
-  lazy = derive2 { name="lazy"; version="1.2-15"; sha256="1pdqgvn0qpfg5hcg5159ccf5qj2nd1ibai9p85rwjpddfynk6jks"; depends=[]; };
+  lazy = derive2 { name="lazy"; version="1.2-16"; sha256="1psh3sng1pm23pjwy7iszb21ys7d29ry34ymvpgxj6zdhywwi5n7"; depends=[]; };
   lazyData = derive2 { name="lazyData"; version="1.1.0"; sha256="0mbmmx6dh8ph4lrx1b4gxbwz3jwxv4nqi0xvfzpzrm3bwbsjc634"; depends=[]; };
   lazyWeave = derive2 { name="lazyWeave"; version="3.0.2"; sha256="1a7l0rgkp3xq2s6bikciq778fwyr282baa6jk9ip4a71s931p2ag"; depends=[Hmisc labelVector]; };
   lazyeval = derive2 { name="lazyeval"; version="0.2.1"; sha256="0q9zx78ncy2ffzrf9sh053069kd3w1xn1ss3gsbyf3y4jhza9cw3"; depends=[]; };
-  lazyrmd = derive2 { name="lazyrmd"; version="0.2.0"; sha256="0ahm1wspvm625lx7y2zz05bvv66rlswphs84vpkcqb0dqfcn3s48"; depends=[digest htmltools htmlwidgets knitr rmarkdown]; };
+  lazyrmd = derive2 { name="lazyrmd"; version="0.2.0.1"; sha256="0yzamy1bfq0d7mnrr24wzvvw6lq7rhfs6qnqypfmym65j5kfj0f8"; depends=[digest htmltools htmlwidgets knitr rmarkdown]; };
   lazysql = derive2 { name="lazysql"; version="0.1.3"; sha256="18vff80rl8ckjwfqi9dhzs1q35a1wrxvynidji6dy2kvvk38xnpa"; depends=[checkmate magrittr plyr]; };
   lba = derive2 { name="lba"; version="2.4.4"; sha256="0izqndm992zv3sg8v5lpnxbdbxhpxl6hq3bf6xgq3pnw8vl3f6nb"; depends=[alabama MASS plotrix rgl scatterplot3d]; };
   lbfgs = derive2 { name="lbfgs"; version="1.2.1"; sha256="0p99g4f3f63vhsw0s1m0y241is9lfqma86p26pvja1szlapz3jf5"; depends=[Rcpp]; };
   lbfgsb3 = derive2 { name="lbfgsb3"; version="2015-2.13"; sha256="1jpy0j52w8kc8qnwcavjp3smvdwm1qgmswa9jyljpf72ln237vqw"; depends=[numDeriv]; };
+  lbfgsb3c = derive2 { name="lbfgsb3c"; version="2018-2.13"; sha256="01pdzh1wfj5xpxl08c13rrf2iyf616s2fav7pznlgha7bpkdc2j4"; depends=[numDeriv Rcpp RcppArmadillo]; };
   lbiassurv = derive2 { name="lbiassurv"; version="1.1"; sha256="1i6l3y4rasqpqka7j39qjx22wjbilgc9pkp05an52aysfvfxy193"; depends=[actuar]; };
   lbreg = derive2 { name="lbreg"; version="1.2"; sha256="0wcw5w07fgmxwzmamf380l8vxw9fnxhbrhcwwfy6x87xby3bzr1b"; depends=[MASS]; };
   lcda = derive2 { name="lcda"; version="0.3"; sha256="1ximsyn6qw2gfn7b1hdpbjs6h6nk7hrignlii0np1lbf0k8l4xxl"; depends=[poLCA]; };
@@ -7970,44 +8318,48 @@ in with self; {
   ldat = derive2 { name="ldat"; version="0.2.0"; sha256="04l544js7xzaywd2mj3kcz40gxn98primzmzd1ihk35lqmpd7h8y"; depends=[BH lvec Rcpp]; };
   ldatuning = derive2 { name="ldatuning"; version="0.2.0"; sha256="18nm4hj7733c1cp03hyddnivhiiyv7ndnw9m6j3af019jjmvf215"; depends=[ggplot2 reshape2 Rmpfr scales slam topicmodels]; };
   ldbod = derive2 { name="ldbod"; version="0.1.2"; sha256="1ylzkswnhf4jnjx2ijasy49pj78ffx333za0bx2fnf3g85kicqiv"; depends=[mnormt RANN]; };
-  ldbounds = derive2 { name="ldbounds"; version="1.1-1"; sha256="15ixrq615x64zmi6dryq3ww0dqxd0qf5xx1bs3w934sf99l46bhs"; depends=[lattice]; };
+  ldbounds = derive2 { name="ldbounds"; version="1.1-1.1"; sha256="10rmkidvvhwnrkc62c5ld44xhbvx1k8mch28h1yryakn8gznp3p8"; depends=[lattice]; };
   ldhmm = derive2 { name="ldhmm"; version="0.4.5"; sha256="1pax1hl0h07nc9d34pf0jqgpcxr7y7dpqcm2hlclrmsinhj9q8vi"; depends=[ecd ggplot2 moments optimx scales xts zoo]; };
   ldr = derive2 { name="ldr"; version="1.3.3"; sha256="1c48qm388zlya186qmsbxxdcg1mdv3nc3i96lqb40yhcx2yshbip"; depends=[GrassmannOptim Matrix]; };
   leabRa = derive2 { name="leabRa"; version="0.1.0"; sha256="08yiwyfg9bp4i9w5yyw9p63wyvgj39kd64y3h21j2jmpw8zxncdq"; depends=[plyr R6]; };
   leaderCluster = derive2 { name="leaderCluster"; version="1.2"; sha256="1lqhckarqffm2l3ynji53a4hrfn0x7zab7znddia76r2h6nr02zb"; depends=[]; };
   leafSTAR = derive2 { name="leafSTAR"; version="1.0"; sha256="16zfaj0v6dx6mhy6m126lxa6w0dzfw4acm83jlbrizaz52amhv6a"; depends=[]; };
-  leaflet = derive2 { name="leaflet"; version="2.0.1"; sha256="01ngvwj2w0hlxz24x32ffwkcd5rrbm1w57mp7mlaapi3yfnxaxlq"; depends=[base64enc crosstalk htmltools htmlwidgets magrittr markdown png raster RColorBrewer scales sp viridis]; };
+  leaflet = derive2 { name="leaflet"; version="2.0.2"; sha256="051i5qmwa0zbk4jpjrx9kzk4g8qg9c3cavvhw19yj08fjhh8si7s"; depends=[base64enc crosstalk htmltools htmlwidgets magrittr markdown png raster RColorBrewer scales sp viridis]; };
   leaflet_esri = derive2 { name="leaflet.esri"; version="1.0.0"; sha256="01bwzxh2rdhpvvazaxsji8axl765q1ix1fdxla6i61nvqkpw3dz1"; depends=[htmltools leaflet leaflet_extras]; };
   leaflet_extras = derive2 { name="leaflet.extras"; version="1.0.0"; sha256="0li7651cwlz7sg04xdrmvhkrf0n6amaydck7gqz0wkb6wq8hcyzw"; depends=[htmltools htmlwidgets leaflet magrittr stringr]; };
   leaflet_minicharts = derive2 { name="leaflet.minicharts"; version="0.5.4"; sha256="17lrchpry3in36jdkinsxs9lzqnx65xyk9g939knc8nmjw6z2j2r"; depends=[htmltools leaflet]; };
   leafletCN = derive2 { name="leafletCN"; version="0.2.1"; sha256="1rg39n4bjacwss9nbdnz8y2zh8hxlc7a5ygndhjbmzajnbxfh09b"; depends=[htmltools jsonlite leaflet magrittr rgeos sp]; };
   leafletR = derive2 { name="leafletR"; version="0.4-0"; sha256="0j1i971dl3smq8rcsa5s4rfmmk936k2q6xa4hppfzwhrxs3xkkkx"; depends=[brew jsonlite]; };
+  leanpubr = derive2 { name="leanpubr"; version="0.3.1"; sha256="0c8pmzn25cwv0wccf30zrrqrs5amlk8iqyyva9vp9976wzwgbxrx"; depends=[httr jsonlite xml2]; };
   leapp = derive2 { name="leapp"; version="1.2"; sha256="1yiqzmhgl5f3zwpcc5sz3yqrvp8p6r4w2ffdfyirirayqc96ar17"; depends=[corpcor MASS sva]; };
   leaps = derive2 { name="leaps"; version="3.0"; sha256="11gjmn1azrjw5xlvdb4gknj9985kck9x8zb9np1rnk2smp6pka2m"; depends=[]; };
   learNN = derive2 { name="learNN"; version="0.2.0"; sha256="0q0j25vi7hrwaf38y10m24czf3rsvj937jvkz3ns12bd8srlflah"; depends=[]; };
+  learnPopGen = derive2 { name="learnPopGen"; version="0.9.8"; sha256="1f1wf7g3r68vd0d89cbqb3ik61h67sy40j86628yb7r0x0xk85dn"; depends=[gtools phytools]; };
   learningCurve = derive2 { name="learningCurve"; version="1.1.2"; sha256="02dl5rlvwa8dvhknf4kdfg3aial54shnxrq7k2k8yj2dj0qh062c"; depends=[ggplot2 gridExtra scales tibble]; };
   learningr = derive2 { name="learningr"; version="0.29"; sha256="1nr4ydcq2mskv4c0pmf0kxv5wm8pvjqmv19xz5yaq0j834b0n5q7"; depends=[plyr]; };
   learnr = derive2 { name="learnr"; version="0.9.2.1"; sha256="0jbk0g6fkw7zs8ykzhsvh9vvz8xmc4v03bqzjsa5mmpxpqan5vx5"; depends=[evaluate htmltools htmlwidgets jsonlite knitr markdown rappdirs rmarkdown rprojroot shiny withr]; };
   learnrbook = derive2 { name="learnrbook"; version="0.0.2"; sha256="1k17dk8ahn1ifwid1hhx0k7fpgc62zg82y66bbf6nhd4dgdbbv2p"; depends=[]; };
   learnstats = derive2 { name="learnstats"; version="0.1.1"; sha256="1sa064cr7ykl4s1ssdfmb3v1sjrnkbwdh04hmwwd9b3x0llsi9vv"; depends=[ggplot2 Rcmdr shiny]; };
+  ledger = derive2 { name="ledger"; version="1.0.1"; sha256="0f97wxzkhssf0z5kslsx530b4a27fdiiakiylqbfam7xzlqz34yj"; depends=[dplyr rio rlang tidyr]; };
   leerSIECyL = derive2 { name="leerSIECyL"; version="1.0.2"; sha256="1zx28gpnys9mmhq7wwljfnq92wj1h1vxgqiirnfmn36z942nvmxl"; depends=[RCurl]; };
   lefse = derive2 { name="lefse"; version="0.1"; sha256="1zdmjxr5xa5p3miw79mhsswsh289hgzfmn3mpj1lyzal1qgw1h5m"; depends=[ape fBasics geiger picante SDMTools vegan]; };
   leiv = derive2 { name="leiv"; version="2.0-7"; sha256="15ay50886xx9k298npyksfpva8pck7fhqa40h9n3d7fzvqm5h1jp"; depends=[]; };
   lemon = derive2 { name="lemon"; version="0.4.1"; sha256="16zr2xg72vxplrvsrrz2fp0akqs4am1k2ymk4mdn2yzzby41dn40"; depends=[ggplot2 gridExtra gtable knitr lattice plyr]; };
-  lero_lero = derive2 { name="lero.lero"; version="0.1"; sha256="1jndsgy48fn085ilkh8dfc3w76kfnfj0x70d1m3h59zxi3x9lb82"; depends=[stringr]; };
-  lessR = derive2 { name="lessR"; version="3.7.5"; sha256="1irsi3i6kih7mdkwvd42dknhgz16v7mdrdvfqsrqa85cshpl7aad"; depends=[colorspace ellipse foreign lattice latticeExtra leaps openxlsx png robustbase sas7bdat triangle]; };
+  lero_lero = derive2 { name="lero.lero"; version="0.2"; sha256="03ll7jzcay0swwpmxyf0y9k2h8mxx4p5v3ggm9dgdz4j99934l70"; depends=[]; };
+  lessR = derive2 { name="lessR"; version="3.7.6"; sha256="04gwdfbj5ix6zpwazl2f83x7jhdyrhhkz4s0dz1609c10m8zjpm1"; depends=[colorspace ellipse foreign lattice latticeExtra leaps openxlsx png robustbase sas7bdat triangle]; };
+  lest = derive2 { name="lest"; version="1.0.0"; sha256="06ng0dpj37bhhwc34ilpks2ics97m9yjdpj4q993h3s2fn8kdgxw"; depends=[]; };
   lestat = derive2 { name="lestat"; version="1.9"; sha256="1skxymdf3ncmdbskh7711xxgwsmwxfxnl52gcgw06jscx6s6wrsd"; depends=[MASS]; };
   letsR = derive2 { name="letsR"; version="3.1"; sha256="0wyqqq7w21k87md3pwsz3kdaws345fdhh2xgavwiiywalg0gvxxx"; depends=[fields geosphere maps maptools raster rgdal rgeos sp XML]; };
   lettercase = derive2 { name="lettercase"; version="0.13.1"; sha256="0s2s42v6a3mlz6084sk5wcbap3czgbd53f9p64pxwd1yfj18lbyx"; depends=[stringr]; };
   lexRankr = derive2 { name="lexRankr"; version="0.5.0"; sha256="1l0p4qg6lcpp1f2n6mh1glvxzy3bis0c1ra8x9z5v26x31wmwq68"; depends=[igraph Rcpp SnowballC]; };
-  lexicon = derive2 { name="lexicon"; version="1.0.0"; sha256="0wgf5gvmvybdsijnm4hqkigzr25p3i50y3mxp98cngrm1nqdiq7m"; depends=[data_table syuzhet]; };
+  lexicon = derive2 { name="lexicon"; version="1.1.3"; sha256="085s7k1ywzmsadwmsp1gc2yspv8hp3pp3cjvpq1s39cnwpgi0h0w"; depends=[data_table syuzhet]; };
   lexiconPT = derive2 { name="lexiconPT"; version="0.1.0"; sha256="0w53gnr29nzc1ib54rnxdycs0c5f7vpv586qmvxxzy4ar16kisaq"; depends=[]; };
   lfactors = derive2 { name="lfactors"; version="1.0.4"; sha256="1r8qlwj3zsm233jfx9ag0q5g1knvjmbwl3785pwcd12zi6f68dcc"; depends=[]; };
   lfda = derive2 { name="lfda"; version="1.1.2"; sha256="0y59iigcpmyrmsiwrpv5agja6vz3wxmxd9sl5hbf1ybm4d0lyky4"; depends=[plyr rARPACK]; };
-  lfe = derive2 { name="lfe"; version="2.8"; sha256="138lnrag64hwjgcsyp9y56kq4gby5c9dqfcsl88b7j02hfly7kfv"; depends=[Formula Matrix sandwich xtable]; };
-  lfl = derive2 { name="lfl"; version="1.4.1"; sha256="0r9459mmnx1khpw24w943y1x4xl3zcws2cvv61216yzb0xbqwhc0"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; };
+  lfe = derive2 { name="lfe"; version="2.8-2"; sha256="1j06mnp3jii427dqbdy5hqw6f254nr5is91y24vacmxwk2m44pzd"; depends=[Formula Matrix sandwich xtable]; };
+  lfl = derive2 { name="lfl"; version="1.4.2"; sha256="0lr7r04jpsrp54g4flpwihymvwa3idxhzfjxfbx4ah16rd47nk5x"; depends=[e1071 foreach forecast plyr Rcpp tseries zoo]; };
   lfstat = derive2 { name="lfstat"; version="0.9.4"; sha256="0lm9fyw45kdkkjldkmagykn9p3l3jlw2ky3h00f7j6rqkizjm6r0"; depends=[dygraphs lattice latticeExtra lmom lmomRFA plyr xts zoo]; };
-  lg = derive2 { name="lg"; version="0.1.0"; sha256="0gaid5aihc9dk3igbm8jhsspl1k4k3prqvn7j2vsm92jc7m00iyw"; depends=[ggplot2 ks localgauss logspline mvtnorm]; };
+  lg = derive2 { name="lg"; version="0.2.0"; sha256="0127dprv1zdr9m3m84lak4998d0mjfv9809ylzhr7r8a6zy1qdv8"; depends=[ggplot2 ks localgauss logspline mvtnorm]; };
   lga = derive2 { name="lga"; version="1.1-1"; sha256="1nkvar9lmdvsc3c21xmrnpn0haqk03jwvc9zfxvk5nwi4m9457lg"; depends=[boot lattice]; };
   lgarch = derive2 { name="lgarch"; version="0.6-2"; sha256="05xksc4d6dbf5ls4lf2gpk9xyi99fikr7dva88b84rfgads1yhrh"; depends=[zoo]; };
   lgcp = derive2 { name="lgcp"; version="1.5"; sha256="1n1f87qg0y9r22p3q1qjnfrs7xarvsidgqgg6v2bsb55viwy11g3"; depends=[fields iterators maptools Matrix ncdf4 RandomFields raster rgeos rpanel sp spatstat spatstat_utils]; };
@@ -8016,15 +8368,16 @@ in with self; {
   lhs = derive2 { name="lhs"; version="0.16"; sha256="09clh386i5iig8x36lx02p01zqq0kb9hzvw5slv1ggmjnp1rklcw"; depends=[]; };
   libamtrack = derive2 { name="libamtrack"; version="0.6.3"; sha256="0pdwrz19q1yls0rgr4579f31j86awizx3j31h7vdh6y70ngpmb82"; depends=[]; };
   libcoin = derive2 { name="libcoin"; version="1.0-1"; sha256="1i38v0pq5snx9clhgfiymk6lq87h41pajhp2dvin30snnq0py6qq"; depends=[mvtnorm]; };
+  librarian = derive2 { name="librarian"; version="1.3.0"; sha256="1nlk5v7lk56w4gq97lv1d4k1wza8zankvrzcl0996zqlgz6imz0d"; depends=[devtools]; };
   librarysnapshot = derive2 { name="librarysnapshot"; version="0.1.2"; sha256="0v4x564zpm58kxs5n84bi6mcjhbzjg6a2lc30vsc8kbm3qy0nq38"; depends=[]; };
   libsoc = derive2 { name="libsoc"; version="0.6.4"; sha256="1hdnqgnvzm5116gphxa55k2bc3ksr607px2s2yg1ilmmxdghdccw"; depends=[]; };
-  libstableR = derive2 { name="libstableR"; version="1.0"; sha256="0qk70rl76lz2izgp2c1asx0yvi8xgfq1yg579kcygxk4pnxjdwv4"; depends=[Rcpp]; };
-  lidR = derive2 { name="lidR"; version="1.5.1"; sha256="0r6y07ciajn13rhb8n57xnj1lzvz3hvjb4hm29hxclny93c45l16"; depends=[data_table future gdalUtils geometry gstat lazyeval mapedit mapview memoise RANN raster Rcpp rgeos rgl rlas settings sp]; };
-  lifecontingencies = derive2 { name="lifecontingencies"; version="1.3.2"; sha256="012pfiz4l8xrwrjlzwfc0vxw1wpw2n2f2vj39mlpmg5aswg4mm8k"; depends=[markovchain Rcpp]; };
+  libstableR = derive2 { name="libstableR"; version="1.0.2"; sha256="1gkcgbc8a7ks9x8mqmlz98hk55q3qy62izam7csz1s0r5dzsyqcr"; depends=[Rcpp RcppGSL]; };
+  lidR = derive2 { name="lidR"; version="1.6.1"; sha256="0x5ns3p1qvakk999x42qlrhy71plvcqxp65fbj9kc07npyj6bfgw"; depends=[assertive concaveman data_table future gdalUtils geometry glue gstat lazyeval mapedit mapview memoise RANN raster Rcpp rgeos rgl rlas settings sp]; };
+  lifecontingencies = derive2 { name="lifecontingencies"; version="1.3.5"; sha256="18dlp6bm9hsr99y85fxdbapn8s1daqsynpiqf2cfhyffqiwll97f"; depends=[markovchain Rcpp]; };
   lifecourse = derive2 { name="lifecourse"; version="2.0"; sha256="1m8ihqvzhzpq2m2pdvh37bpq9pdbj23r3y0jkl3q8farh3qj473d"; depends=[TraMineR]; };
   lifelogr = derive2 { name="lifelogr"; version="0.1.0"; sha256="1wygvw61ygpww0kahxhmjdncwg4zc2cshs0brzw18nfqaj8vpfav"; depends=[dplyr fitbitScraper ggplot2 lazyeval lubridate modelr plyr R6 shiny stringr tibble tidyr]; };
   lift = derive2 { name="lift"; version="0.0.2"; sha256="0ynsyl6lw7z7bvwzk2idgxzzqji5ffnnc3bll9h4gwdw666g7fln"; depends=[]; };
-  liftLRD = derive2 { name="liftLRD"; version="1.0-7"; sha256="18gcp5b5jmx37ri4b3nnqvsd0crk5wp53dh5p50arflzw0pn7qn1"; depends=[adlift nlt]; };
+  liftLRD = derive2 { name="liftLRD"; version="1.0-8"; sha256="1m24f4mc70l808cpkcdm91hzb5b3bkzibvgyfi9zs6cs8apcvmy3"; depends=[adlift nlt]; };
   liftr = derive2 { name="liftr"; version="0.9"; sha256="1yg9ql6rklrdcd2qds223naryg3rbdi1mbqrlf5jc3cwzhllcsa9"; depends=[knitr rmarkdown rstudioapi stringr yaml]; };
   liger = derive2 { name="liger"; version="0.1"; sha256="0q26qdy7kgqj70ka2gcpji8ni2w8kxnznhp4ig2251xllw9j7dz4"; depends=[matrixStats Rcpp RcppArmadillo]; };
   lightsout = derive2 { name="lightsout"; version="0.3"; sha256="0ypniqf9wk35dd9j57wd7gxchr5hy25fwhmkndz2z8b9ajhm3c9b"; depends=[magrittr shiny shinyjs]; };
@@ -8033,6 +8386,7 @@ in with self; {
   likelihoodAsy = derive2 { name="likelihoodAsy"; version="0.50"; sha256="009alsxsv9fjpihp3zl0a94y6cvr49nh21skba64lzz9fypm9j8l"; depends=[alabama cond digest nleqslv pracma Rsolnp]; };
   likelihoodExplore = derive2 { name="likelihoodExplore"; version="0.1.0"; sha256="13cnql7pbx8qq1j3cfb3lkzzf2k55shpfa0jd00z30ys6imxzcfn"; depends=[lazyeval plyr]; };
   likert = derive2 { name="likert"; version="1.3.5"; sha256="0c4irxs7pp1z8nj4s8cq23daw4h94n3h7x4f6q1d85614qcl9l3p"; depends=[ggplot2 gridExtra plyr psych reshape2 xtable]; };
+  lilikoi = derive2 { name="lilikoi"; version="0.1.0"; sha256="1v7xrkv8xxmq6cdww4z1p9vlvy71cqgd3yb5mal4v9w2wrfaps6z"; depends=[caret corrplot devtools dplyr e1071 gbm ggplot2 glmnet hash Hmisc infotheo Matrix pamr princurve pROC R_oo randomForest reshape2 RWeka stringr]; };
   limSolve = derive2 { name="limSolve"; version="1.5.5.3"; sha256="1ll6ir42h3g2fzf0wqai213bm82gpwjj2hfma2np3mz024sc09rg"; depends=[lpSolve MASS quadprog]; };
   lime = derive2 { name="lime"; version="0.4.0"; sha256="0hml1f3fq21s45h1cg3qi4w7vdfdxcsz8q4h1429gbppbdanz9i1"; depends=[assertthat ggplot2 glmnet gower htmlwidgets magick Matrix Rcpp RcppEigen shiny shinythemes stringdist stringi]; };
   limitplot = derive2 { name="limitplot"; version="1.2"; sha256="0wj1xalm80fa5pvjwh2zf5hpvxa3r1hnkh2z9z285wkbrcl0qfl2"; depends=[]; };
@@ -8043,16 +8397,20 @@ in with self; {
   linear_tools = derive2 { name="linear.tools"; version="1.3.0"; sha256="14lp3gifzbid82lkr7rdqajz2abp8m7y8irpwx6s8w66djjfckda"; depends=[ggplot2 magrittr plyr pryr scales stringr]; };
   linearQ = derive2 { name="linearQ"; version="1.0"; sha256="0c6ccllv4zf8zgs3957zjvnkdwbv2ryrs0f5lzk1clc233vm7acm"; depends=[Rcpp stepR]; };
   linemap = derive2 { name="linemap"; version="0.1.0"; sha256="0qkbmpfr742xbs3xn5ppx6q0prwrr9mk1c1mv050cm47dm7jcs6l"; depends=[sf]; };
+  lineqGPR = derive2 { name="lineqGPR"; version="0.0.3"; sha256="0adrjsfqwy9wrw4hf48p7jgn985bbpv6jyhhkab19fabc84iy1jg"; depends=[broom ggplot2 MASS Matrix mvtnorm nloptr quadprog restrictedMVN tmg TruncatedNormal]; };
   lineup = derive2 { name="lineup"; version="0.37-10"; sha256="1w45ll6phynn03ala0wadmp06rrgg8rcqnhz7hqy4w6q7khbkk6r"; depends=[class qtl]; };
   lingtypology = derive2 { name="lingtypology"; version="1.0.13"; sha256="1v6n2wdz5zkkc1k88jpjrh6nwias496dg2vvglrjd7g4bymb7715"; depends=[leaflet leaflet_minicharts magrittr MASS rgeos rowr sp stringdist]; };
-  link2GI = derive2 { name="link2GI"; version="0.3-0"; sha256="0jzk1p9cygcw0xz9hqfzx74acl4ymn3jmcjj0dxrmknsvfdzcl2d"; depends=[gdalUtils raster rgdal rgrass7 RSAGA sf sp]; };
+  linguisticsdown = derive2 { name="linguisticsdown"; version="1.0.1"; sha256="1y0iwbdkm37h6777p409ac7w8xqp70g2jjcfhxpvnrvvk4v0hrrk"; depends=[dplyr DT knitr magrittr miniUI rstudioapi shiny stringr tidyr]; };
+  link2GI = derive2 { name="link2GI"; version="0.3-5"; sha256="1mxbahxn5kfkvqdyg5mr4gqpbw90ik1xmxvl6a7d4dcacpsqzkl8"; depends=[devtools gdalUtils raster rgdal rgrass7 roxygen2 RSAGA sf sp]; };
   linkR = derive2 { name="linkR"; version="1.1.1"; sha256="1748r7s5g0gvsmghrb7l5lmdbzb9f4vkbgj51v308jr64r1k7l93"; depends=[svgViewR]; };
   linkcomm = derive2 { name="linkcomm"; version="1.0-11"; sha256="1w5sfmzvrk30fr161pk0cy5nj8kasqm6hqgyafq6r280b5s272cb"; depends=[dynamicTreeCut igraph RColorBrewer]; };
   linkim = derive2 { name="linkim"; version="0.1"; sha256="0yvyid9x59ias8h436a202hd2kmqvn8k1zcrgja2l4z2pzcvfn91"; depends=[]; };
+  linkprediction = derive2 { name="linkprediction"; version="1.0-0"; sha256="0p2abdq6ad689236w2d0khlycpjgy6j7xrlb96ngl6csgxwm07bl"; depends=[igraph intergraph]; };
+  linkspotter = derive2 { name="linkspotter"; version="1.2.0"; sha256="0wk27jn8jr5rskjxbixshmp2dl0l74hrc8r6x3rvhy0x0b00zks2"; depends=[dplyr energy ggplot2 Hmisc infotheo mclust minerva pbapply rAmCharts shiny tidyr visNetwork]; };
   linl = derive2 { name="linl"; version="0.0.2"; sha256="1n3sljyycsppk11ri9jijsif3g7v4n8xvk1n4hhx0qg65kh7wmry"; depends=[knitr rmarkdown]; };
   linpk = derive2 { name="linpk"; version="1.0"; sha256="14l3vv507z7x63ziynp07902599syah0icvzq4rxfjf48bf96l63"; depends=[mvtnorm]; };
   linprog = derive2 { name="linprog"; version="0.9-2"; sha256="1ki14an0pmhs2mnmfjjvdzd76pshiyvi659zf7hqvqwj0viv4dw9"; depends=[lpSolve]; };
-  lintools = derive2 { name="lintools"; version="0.1.1.4"; sha256="18rqpm0cg233hclcqskdh3mfpwpbawc582j800mjalii233jzr36"; depends=[]; };
+  lintools = derive2 { name="lintools"; version="0.1.2"; sha256="18layj6a202p0sy9rs022fp0a6fwvixwwmwlyzn7h9kh4y9gvxjz"; depends=[]; };
   lintr = derive2 { name="lintr"; version="1.0.2"; sha256="14l6fi2mdc2swi4xw865q63yngk2b5k553qbyvnhmwq2w4pv07pn"; depends=[codetools crayon digest httr igraph jsonlite knitr rex rstudioapi stringdist testthat]; };
   liqueueR = derive2 { name="liqueueR"; version="0.0.1"; sha256="0rpjib0dz39la63gy9bw9gmdfq2fcx40y4y4wcb6ky41qcjdp1nd"; depends=[itertools]; };
   liquidSVM = derive2 { name="liquidSVM"; version="1.2.1"; sha256="0nw8n4qg2jijbnlza15ifzqsl4pj7gjzi4nd71zp7h0aw5mnp80x"; depends=[]; };
@@ -8065,24 +8423,24 @@ in with self; {
   listdtr = derive2 { name="listdtr"; version="1.0"; sha256="08drps03nndpdxswyv8bjm1bcckjav5pjj7fdx3dzyn0v4dfy619"; depends=[ggplot2]; };
   listenv = derive2 { name="listenv"; version="0.7.0"; sha256="0ma5jsri2zqkrlsm9nqpikl7imbwfy1glsmk13mblw0q245h49k1"; depends=[]; };
   listless = derive2 { name="listless"; version="0.0-2"; sha256="1gr6l4vih7j28kg2mj1xj2yhlpwjc4p894vsxri25vq0r9kgcdym"; depends=[magrittr tidyr]; };
-  listviewer = derive2 { name="listviewer"; version="2.0.0"; sha256="0fq9jdb9yahm095m5ja9j7hlv3ggigj14nlf1pdk26xj2685j8n9"; depends=[htmltools htmlwidgets shiny]; };
+  listviewer = derive2 { name="listviewer"; version="2.1.0"; sha256="09jkrrq4zyzgi66vkpm5n7isxpbckx5hjk39nik766hzarj5i7rs"; depends=[htmltools htmlwidgets shiny]; };
   liteq = derive2 { name="liteq"; version="1.0.1"; sha256="080ljgb2qsfmyppnlp9acmskgq94pmdbbgbhygqkxvzda5bbas8h"; depends=[assertthat DBI rappdirs RSQLite]; };
-  littler = derive2 { name="littler"; version="0.3.3"; sha256="1cbsnm4ffzld93b9q8g6g6h6yskjfwa8j1xani5682ipb7r290x7"; depends=[]; };
+  littler = derive2 { name="littler"; version="0.3.5"; sha256="0zv6yr23swiw7w21qdw26jrw882wh0si7wz73fwl8d554rbhqinw"; depends=[]; };
   liureg = derive2 { name="liureg"; version="1.1.2"; sha256="1zhc5fs47whjvvwwiivykxfchzbjbldyvdmqh9rp7ccwba2q3956"; depends=[]; };
-  live = derive2 { name="live"; version="1.5.7"; sha256="018k2l3klhkxsb6b8xvrvxajgahb6zd02cngkkayfz2477iy8kdl"; depends=[breakDown data_table dplyr forestmodel ggplot2 lubridate MASS mlr shiny]; };
+  live = derive2 { name="live"; version="1.5.8"; sha256="0idnavgmvhq2w6fa46ssaxhj5v8p3x1q8zcgmknp47s9c2h8yfrc"; depends=[breakDown data_table dplyr forestmodel ggplot2 gower lubridate MASS mlr shiny]; };
   livechatR = derive2 { name="livechatR"; version="0.1.0"; sha256="1k0z6q3s9iw962m1lwlx45p95flzl5jg1xh6ng426v9jh1yyrbb2"; depends=[data_table dplyr jsonlite magrittr purrr]; };
   ljr = derive2 { name="ljr"; version="1.4-0"; sha256="0jby94ml8w6pwnxbmv6qfjww2myvvnn9vrmlqpdh71dhgp3z35py"; depends=[]; };
-  llama = derive2 { name="llama"; version="0.9.1"; sha256="1cvm58kivjw77a2fy1jwsajzl1d0i3i123p6glpwdlqn6rlharck"; depends=[BBmisc checkmate ggplot2 mlr parallelMap plyr rJava]; };
+  llama = derive2 { name="llama"; version="0.9.2"; sha256="0knlmfddp70ddhjb9slyibbb9qj7pfybqccv3i4f545qxmmykj2n"; depends=[BBmisc checkmate ggplot2 mlr parallelMap plyr rJava]; };
   lle = derive2 { name="lle"; version="1.1"; sha256="09wq7mzw48czp5k0b4ij399cflc1jz876fqv0mfvlrydc9igmjhk"; depends=[MASS scatterplot3d snowfall]; };
   lllcrc = derive2 { name="lllcrc"; version="1.2"; sha256="06n1fcd3g3z5rl2cyx8jhyscq9fb52mmh0cxg81cnbmai3sliccb"; depends=[combinat data_table plyr VGAM]; };
   llogistic = derive2 { name="llogistic"; version="1.0.0"; sha256="1mddwcfp6c5g36japybjrlirz0q8l7am8akbiv8c6z7jka2nwi00"; depends=[]; };
   lm_beta = derive2 { name="lm.beta"; version="1.5-1"; sha256="0p224y9pm72brbcq8y1agkcwc82j7clsnszqzl1qsc0gw0bx9id3"; depends=[]; };
   lm_br = derive2 { name="lm.br"; version="2.9.3"; sha256="1xadz0rygm58igk0ig0w45132gnsvjxvwqzca4m6v6i6lz9x55pf"; depends=[Rcpp]; };
   lmPerm = derive2 { name="lmPerm"; version="2.1.0"; sha256="1ss2hcfxqvfq4n6hypv7jp0n0apby9payxzaswaysr5368lkidn3"; depends=[]; };
-  lmQCM = derive2 { name="lmQCM"; version="0.1.1"; sha256="1rznr5ky9ngfl8afqh22r4bxkzjyibrwr62f30dcdvpyh863hj0h"; depends=[Biobase genefilter nnet]; };
+  lmQCM = derive2 { name="lmQCM"; version="0.1.2"; sha256="0flir861pnvg6kkkccv7f162gd9ml4mks7pjs0041jrs7bijbh68"; depends=[Biobase genefilter nnet]; };
   lmSubsets = derive2 { name="lmSubsets"; version="0.3"; sha256="1d78gbmxybxb98lapy5m7nyxc7slyxlj50xdh6a4nyckixmf9plp"; depends=[]; };
   lmSupport = derive2 { name="lmSupport"; version="2.9.13"; sha256="0ln5c91mbxkymgnv2nw5m3nrm5bwckpikgb9x1qhmjc55m98wkb8"; depends=[AICcmodavg car gplots gvlma lme4 pbkrtest psych pwr]; };
-  lme4 = derive2 { name="lme4"; version="1.1-17"; sha256="0czwdy1s8h3slaw73pz0h8qmqczf5135fz6i46i2dv1ql2pbq49x"; depends=[lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; };
+  lme4 = derive2 { name="lme4"; version="1.1-18-1"; sha256="01ar4fak8zj7c1vmh9m576wchxj5qzpfqn637s7fh3fl6cpz0alq"; depends=[lattice MASS Matrix minqa nlme nloptr Rcpp RcppEigen]; };
   lmeNB = derive2 { name="lmeNB"; version="1.3"; sha256="03khn9wgjbz34sx0p5b9wd3mhbknw8qyvyd5pvllmjipnir63d3q"; depends=[lmeNBBayes numDeriv statmod]; };
   lmeNBBayes = derive2 { name="lmeNBBayes"; version="1.3.1"; sha256="13shfsh9x6151xy8gicb25sind90imrwclnmfj96b76p5dvhzabm"; depends=[]; };
   lmeSplines = derive2 { name="lmeSplines"; version="1.1-10"; sha256="0fy6hspk7rqqkzv0czvvs8r4ishvs7zsf4ykvia65nj26w7yhyia"; depends=[nlme]; };
@@ -8104,11 +8462,12 @@ in with self; {
   lmom = derive2 { name="lmom"; version="2.6"; sha256="0wxlclzypg6dnvk09k26pdgn3nijl06xsa9rny5l03xzar01mz5s"; depends=[]; };
   lmomPi = derive2 { name="lmomPi"; version="0.5.0"; sha256="07ggfzgvhc6kkqs8bbs6z01rbhgb0ki2y4li6r0nkiby1wcpx0py"; depends=[lmom stringr]; };
   lmomRFA = derive2 { name="lmomRFA"; version="3.1"; sha256="1gq5sjdywz1jbsshrh350zad7iifml2yj8an5xa63ghxiskrxscx"; depends=[lmom]; };
-  lmomco = derive2 { name="lmomco"; version="2.3.1"; sha256="0nyl18kipsab4ka5ywbmw28kkr6i09w4lc9pa96m1fh765zghjxi"; depends=[goftest Lmoments MASS]; };
-  lmridge = derive2 { name="lmridge"; version="1.1"; sha256="1r4g7482iz4b7jk0gj169bj96ip2wyrff1ndkwhf0qzg6r6vqa8d"; depends=[]; };
+  lmomco = derive2 { name="lmomco"; version="2.3.2"; sha256="1gqwn5yjd3zcwd5nysayf88vjhj2j1qxfgqcw63q7f2ih0xk1lqp"; depends=[goftest Lmoments MASS]; };
+  lmridge = derive2 { name="lmridge"; version="1.2"; sha256="091rznzh77bmsv7sw9xmsq6s9pnljyq7qyl74kgcxss718134jr3"; depends=[]; };
   lmtest = derive2 { name="lmtest"; version="0.9-36"; sha256="0sym9sm1vl6bbgq01jhz1plxqmgh8hrgrn7rw0mwvsalcn6id7xy"; depends=[zoo]; };
   lmvar = derive2 { name="lmvar"; version="1.5.0"; sha256="068ib0abpvds0ibb0d6m71svv7d3l0is4kdin1wzsn633kk3zcfy"; depends=[Matrix matrixcalc maxLik]; };
-  loa = derive2 { name="loa"; version="0.2.43.3"; sha256="0krrv5sicm4xvgilri8nwby6jlidx375b4sk273hxq7bhayw4hqq"; depends=[lattice MASS mgcv plyr png RColorBrewer RgoogleMaps]; };
+  loa = derive2 { name="loa"; version="0.2.44.2"; sha256="16yrkl8l4wa4i3iizncm58l75l46acfr2lf4vn53crcci9xra333"; depends=[lattice MASS mgcv plyr png RColorBrewer RgoogleMaps]; };
+  localIV = derive2 { name="localIV"; version="0.1.0"; sha256="0q2vjiwj301g0lqaafpk6i1cxdwgaanz9ckwj2zkzk4h3gx2afw3"; depends=[KernSmooth mgcv sampleSelection]; };
   localgauss = derive2 { name="localgauss"; version="0.40"; sha256="0y0pcg2i7lr4wipxawn06hy0q11znhcn2ah6rqwnlyy8pab70pyq"; depends=[foreach MASS matrixStats]; };
   localsolver = derive2 { name="localsolver"; version="2.3"; sha256="1d18rihzqf1f5j9agfp8jysll7lqk1ai23hkdqkn6wwxj442llv4"; depends=[]; };
   locfdr = derive2 { name="locfdr"; version="1.1-8"; sha256="1falkbp2xz07am8jlhwlvyqvxnli4nwl188kd0g58vdfjcjy3mj2"; depends=[]; };
@@ -8119,9 +8478,10 @@ in with self; {
   loder = derive2 { name="loder"; version="0.2.0"; sha256="0m6g8c25dmq0wgpy8y6cbggymxdvqwb6lp2yzs5bgpq183512spb"; depends=[]; };
   loe = derive2 { name="loe"; version="1.1"; sha256="1n16pgfxg9vcn729xxjbbvavg2ywbdcch9v2ph8nv3z7psc0q46c"; depends=[MASS]; };
   log4r = derive2 { name="log4r"; version="0.2"; sha256="07q8m7z2sxm6n25a62invf76qakxdsijfh3272spc8xrmdmyw6rj"; depends=[]; };
-  logKDE = derive2 { name="logKDE"; version="0.1.0"; sha256="1jp36v8dfdli85lzcya4nvw17fjrsfldm8v487k1s1d1s9qz55vl"; depends=[pracma Rcpp]; };
+  logKDE = derive2 { name="logKDE"; version="0.3.2"; sha256="09gachibj0klqa9ijw572lwphbh9qj6zqray5byq1dh7zsiq516q"; depends=[pracma Rcpp]; };
+  logNormReg = derive2 { name="logNormReg"; version="0.2-0"; sha256="1mry2vqb9sqv17xw26k637w3i3zqjgayz2ql43rbz2f5248lm0yc"; depends=[]; };
   logOfGamma = derive2 { name="logOfGamma"; version="0.0.1"; sha256="0r7di0l646ycfmdjk8hli6b0v7qj0i8z3i8i7rwd3fsblb2q22vd"; depends=[]; };
-  logbin = derive2 { name="logbin"; version="2.0.3"; sha256="0jvld5lh69288g80ypvqyg0s0nip9hgd8p09b91xp11vnlap0g02"; depends=[glm2 turboEM]; };
+  logbin = derive2 { name="logbin"; version="2.0.4"; sha256="01gwfq9r2yy28iymxa402r8jp8km953cb5i60xnskcpzh8bv4rmf"; depends=[glm2 turboEM]; };
   logconcens = derive2 { name="logconcens"; version="0.16-4"; sha256="11bk03kjlb747g54axmb0nayz226g41xvanbw79aij76vjbglv7y"; depends=[]; };
   logcondens = derive2 { name="logcondens"; version="2.1.5"; sha256="1sq27klnphp74hq0l0460m9bb7lrl06mpgkg4qq8iciy3yy1mrkj"; depends=[ks]; };
   logcondens_mode = derive2 { name="logcondens.mode"; version="1.0.1"; sha256="1i2c2prk5j863p3a3q3xnsv684igfi5czz3dib7zfjldpf0qyaq7"; depends=[distr logcondens]; };
@@ -8131,16 +8491,19 @@ in with self; {
   loggle = derive2 { name="loggle"; version="1.0"; sha256="0r1r8m2ckva17vbvwkzhq1lx6bap0kbfj9hxyk46adslcf3xxrxp"; depends=[doParallel foreach glasso igraph Matrix sm]; };
   logiBin = derive2 { name="logiBin"; version="0.3"; sha256="06y5bqm3j6xdr1cd607v2sqkghnd2bv6bvxc6cz8dvp8jabqa0zm"; depends=[data_table doParallel foreach iterators partykit]; };
   logihist = derive2 { name="logihist"; version="1.0"; sha256="1q3322rh3g31c5i80aw54pln0m1jgxmbx30cn31nlh3ijkvnpq9a"; depends=[ggplot2]; };
-  logistf = derive2 { name="logistf"; version="1.22"; sha256="0npwqbl8rfvn6w2y0qpkckj44mvjjccj0cn9axp2wcs03cmz0rp8"; depends=[mgcv mice]; };
+  logistf = derive2 { name="logistf"; version="1.23"; sha256="0f1qn7q3h0qg2qdiz69ab03qvl4xhizqg304vjak72390nj25nss"; depends=[mgcv mice]; };
   logistic4p = derive2 { name="logistic4p"; version="1.5"; sha256="0h0dxyklqc95ykyril1a3d2bdnszj5l9dqbxzh2wbfmk06prvh8b"; depends=[MASS]; };
   logisticPCA = derive2 { name="logisticPCA"; version="0.2"; sha256="07ikyn127ld0fjdw7x911wrswqwqpw4lbcz0iffvh6jfjkgyk341"; depends=[ggplot2]; };
+  logisticRR = derive2 { name="logisticRR"; version="0.1.0"; sha256="1bk3dj3pn0rprcypwwal96xfszx3nfzfypyr8l7lp4h3v5mqbrxw"; depends=[]; };
   logitchoice = derive2 { name="logitchoice"; version="0.9.4"; sha256="1vkw7cwp7nwrsj9ifn4gz21zbw9da5rph9lr3w466zxkzdkbldqj"; depends=[]; };
-  logitnorm = derive2 { name="logitnorm"; version="0.8.36"; sha256="0iag05fhzrizi74bjkl909ky7zxi9yzqx6im2ki86bpczijyfxb8"; depends=[]; };
+  logitnorm = derive2 { name="logitnorm"; version="0.8.37"; sha256="1a9plxsxy29j9xpvwsznbbj150h9daay5zfzlmkh5y0f7f15w3a9"; depends=[]; };
   loglognorm = derive2 { name="loglognorm"; version="1.0.1"; sha256="0rhx769a5nmidpbpngs2vglsbkpgw9badz3kj3jfmpj873jfnbln"; depends=[]; };
-  logmult = derive2 { name="logmult"; version="0.6.5"; sha256="0ak13nfgaima6g75rxbghl7xmagfp4qshj09x1fxh2r2rcags7dk"; depends=[gnm qvcalc]; };
+  logmult = derive2 { name="logmult"; version="0.7.0"; sha256="05asjafpairgvix8gs9n5bwiwxv857wzbmni67clm2dzkh7vsn22"; depends=[gnm qvcalc]; };
+  lognorm = derive2 { name="lognorm"; version="0.1.3"; sha256="02f3z7m11lnwndlahw03936l95lrhjil3ygrhi40qk5ihnq27d9z"; depends=[Matrix]; };
   logspline = derive2 { name="logspline"; version="2.1.11"; sha256="0747xl0p6kigc936kyqxqgmwxsh01lb9913w7wq0q05766pnw7kq"; depends=[]; };
   lokern = derive2 { name="lokern"; version="1.1-8"; sha256="1dlyvgd2i4dckd8ic3x75r4sikwalch9b2f13xp5rhkzmfzbprxq"; depends=[sfsmisc]; };
   lolR = derive2 { name="lolR"; version="2.0"; sha256="0ygxm5qym1s64pa8a04jf44y786svrkhscda2x781jx8gpil753v"; depends=[abind ggplot2 irlba MASS pls]; };
+  lolog = derive2 { name="lolog"; version="1.1"; sha256="03bhmzd7qw6hq82lymy183x4q2lzm5f9ish2fy7dqif1iqvkq3fq"; depends=[BH ggplot2 intergraph Matrix network Rcpp reshape2]; };
   lomb = derive2 { name="lomb"; version="1.0"; sha256="06lbk7s1ilqx6xsgj628wzdwmnvbs0p03hdpx8665fhddcxh3ryy"; depends=[]; };
   longCatEDA = derive2 { name="longCatEDA"; version="0.31"; sha256="0dji41lsknfwmgb2fczzm37dm97wvi45rh878w7pwlzwdh9vq8va"; depends=[]; };
   longROC = derive2 { name="longROC"; version="1.0"; sha256="1fs11vqi4hy99d7shzzdvd6ic5gay6rh2027w6j0qpd04n8q88m8"; depends=[survival]; };
@@ -8148,17 +8511,19 @@ in with self; {
   longclust = derive2 { name="longclust"; version="1.2.2"; sha256="1yxxz8apbl1vaqzrsiq7r5ss87j2li595bkvibpkwslgwzv47dcs"; depends=[]; };
   longitudinal = derive2 { name="longitudinal"; version="1.1.12"; sha256="1d83ws28nxi3kw5lgd5n5y7865djq7ky72fw3ddi1fkkhg1r9y6l"; depends=[corpcor]; };
   longitudinalData = derive2 { name="longitudinalData"; version="2.4.1"; sha256="0lnvcfgj721bawl1ciz0jw83mfsnzkhg6jn824vr3qdm4rbib2vd"; depends=[class clv misc3d rgl]; };
-  longmemo = derive2 { name="longmemo"; version="1.0-0"; sha256="1jnck5nfwxywj74awl4s9i9jn431655mmi85g0nfbg4y71aprzdc"; depends=[]; };
-  longpower = derive2 { name="longpower"; version="1.0-16"; sha256="0hbv43y0fgbv1qiczy4kibqc7pk7whrz4kyxshg8730y8g9wyxdi"; depends=[lme4 nlme]; };
+  longmemo = derive2 { name="longmemo"; version="1.1-1"; sha256="0myn2xpg0mw3x5zma0y1dza2jg3x9zj9z8xv2z8l2q9pm228xn0d"; depends=[]; };
+  longpower = derive2 { name="longpower"; version="1.0-16.1"; sha256="0ywzx9rsh53mqlzxm0dzmwpxdyj187pxhjwd7cf463l4vm49qgmy"; depends=[lme4 nlme]; };
   longurl = derive2 { name="longurl"; version="0.3.0"; sha256="0ysa70zlkk3ybddj3yd3vbhjnkjbrisiz5a2hgbjx10p33m1r3am"; depends=[dplyr httr purrr]; };
   loo = derive2 { name="loo"; version="2.0.0"; sha256="1k2qhma7gm4l3h9wf5gh1gm09map2jqcdzz3pba4gf039n8h3gsl"; depends=[matrixStats]; };
   lookupTable = derive2 { name="lookupTable"; version="0.1"; sha256="0ipy0glrad2gfr75kd8p3999xnfw4pgpbg6p064qa8ljqg0n1s49"; depends=[data_table dplyr]; };
-  loon = derive2 { name="loon"; version="1.1.1"; sha256="023vrnbn4pikiq6l57phwy9zy1lp6vxrkinrffaxwicvaj58c931"; depends=[]; };
+  loon = derive2 { name="loon"; version="1.2.0"; sha256="1ch5hzpyvq0vil8fwpkpjh8yxyq876shy9kyr6svs2x7jc132qvr"; depends=[gridExtra]; };
   loop = derive2 { name="loop"; version="1.1"; sha256="1gr257fm92rfh1sdhsb4hy0fzwjkwvwm3v85302gzn02f86qr5dm"; depends=[MASS]; };
   loopr = derive2 { name="loopr"; version="1.0.1"; sha256="1qzfjv15ymk8mnvb556g2bfk64jpl0qcvh4bm3wihplr1whrwq6y"; depends=[dplyr lazyeval magrittr plyr R6]; };
+  loose_rock = derive2 { name="loose.rock"; version="1.0.9"; sha256="03713ac7farwgjidnx46j6mzm6if10b33lrpzban9lis713s8qqm"; depends=[biomaRt digest dplyr futile_options ggfortify ggplot2 MASS reshape2 rlang]; };
   lordif = derive2 { name="lordif"; version="0.3-3"; sha256="1yby9fvzdi1dzvzp6d6h144k1p9nfacd8l5bd66dmhnc8sp2nlx5"; depends=[mirt rms]; };
   lorec = derive2 { name="lorec"; version="0.6.1"; sha256="0mgypd8awixh1lzbh5559br4k7vi3pfmwniqhgh68wc06sc6bn65"; depends=[]; };
-  lori = derive2 { name="lori"; version="0.1.0"; sha256="1sqwfai0h776i3g0gxqfagisayv428gzw9540d90nzbrg9vkj28j"; depends=[ade4 FactoMineR glmnet lars lattice logmult NLRoot pdist psych svd]; };
+  lorentz = derive2 { name="lorentz"; version="1.0-0"; sha256="0irnmzsvp4jdych2j68y68yvly1w3c0fxkply7lqhw2h1hbxhlgx"; depends=[emulator magrittr]; };
+  lori = derive2 { name="lori"; version="0.2.1"; sha256="0440hnb05lmvww9w7nf568j2azh4bk28z2r2fjba1mx3c2wk8h63"; depends=[ade4 FactoMineR glmnet gridExtra lars lattice NLRoot pdist psych svd]; };
   lowmemtkmeans = derive2 { name="lowmemtkmeans"; version="0.1.2"; sha256="08zhdw48rzw47yzhg4s37bkliyngxs46cyb57dvng1s3m0w0dhvi"; depends=[Rcpp RcppArmadillo]; };
   lpSolve = derive2 { name="lpSolve"; version="5.6.13"; sha256="13a9ry8xf5j1f2j6imqrxdgxqz3nqp9sj9b4ivyx9sid459irm6m"; depends=[]; };
   lpSolveAPI = derive2 { name="lpSolveAPI"; version="5.5.2.0-17"; sha256="1gfxnjkhhyybhyg29qdrdqzwq569b6pgwjgacmw3q7aldc724cyz"; depends=[]; };
@@ -8166,12 +8531,11 @@ in with self; {
   lpc = derive2 { name="lpc"; version="1.0.2"; sha256="1r6ynkhqjic1m7fqrqsp7f8rpxqih5idn4j96fqrdj8nj01znv29"; depends=[]; };
   lpdensity = derive2 { name="lpdensity"; version="0.2.2"; sha256="1fv1biyc12zg0wfqcr5kp761fy6n6879knvlxr2zjp6rjssi3h6d"; depends=[ggplot2]; };
   lpint = derive2 { name="lpint"; version="2.0"; sha256="0p1np8wlfbax0c7ysc5fs9dai8s00h1v0gan89dbd6bx06307w2r"; depends=[]; };
-  lpirfs = derive2 { name="lpirfs"; version="0.1.0"; sha256="0xkm6ds44v3g0vnh6nribysg1fbphgx81zklx82xmi5cvl5z69c1"; depends=[doParallel dplyr foreach ggplot2 mFilter Rcpp RcppArmadillo vars]; };
+  lpirfs = derive2 { name="lpirfs"; version="0.1.3"; sha256="17jgk0y5xgm3g1wl0mq0sjjw1ghvs009cr5qhh5hpb1k5yk14q4n"; depends=[doParallel dplyr foreach ggplot2 Rcpp RcppArmadillo]; };
   lplyr = derive2 { name="lplyr"; version="0.1.12"; sha256="1wcab8wwdzpgb61q83gfn2d34vsrd3qa4xyb9sqna6krss1ii1in"; depends=[bazar dplyr lazyeval magrittr]; };
   lpme = derive2 { name="lpme"; version="1.1.1"; sha256="0si90nkgl8bqk8yvd2igdsrngiwqh8891072pfpzipifnd0f5448"; depends=[decon flexmix locpol Rcpp RcppArmadillo]; };
   lpmodeler = derive2 { name="lpmodeler"; version="0.2-1"; sha256="17k67l03dkjx61p4hwswghjm6awk0zx173x9xafxrfd8jrgsf6kf"; depends=[slam]; };
   lpridge = derive2 { name="lpridge"; version="1.0-8"; sha256="0jk4l95z9rcdqkc8lpp4sf1mg2dqj67rhqw1iafrxy5lx4jfaqqx"; depends=[]; };
-  lqa = derive2 { name="lqa"; version="1.0-3"; sha256="141r2cd9kybi6n9jbdsvhza8jdxxqch4z3qizvpazjy8qifng29q"; depends=[]; };
   lqmm = derive2 { name="lqmm"; version="1.5.4"; sha256="117g38m650mi28ff19nd71dadbdphd1ladmrip2kbsnkpcz2q37p"; depends=[nlme SparseGrid]; };
   lqr = derive2 { name="lqr"; version="1.7"; sha256="110c18wc3y3nkdwjgrksw20kvvy65822njrpy4gwb100ifigw0v7"; depends=[ghyp spatstat]; };
   lrequire = derive2 { name="lrequire"; version="0.1.3"; sha256="03c8h9v2xhlv7bj5jv117a27gaqaly2kdxs9zyihsm9yh9rg3d79"; depends=[]; };
@@ -8180,39 +8544,40 @@ in with self; {
   lsa = derive2 { name="lsa"; version="0.73.1"; sha256="1af8s32hkri1hpngl9skd6s5x6vb8nqzgnkv0s38yvgsja4xm1g5"; depends=[SnowballC]; };
   lsasim = derive2 { name="lsasim"; version="1.0.1"; sha256="0bwk6bv0wp30v6p55nyd1hcvwnjjddwccyy1swf6sg7lw3fy657p"; depends=[]; };
   lsbclust = derive2 { name="lsbclust"; version="1.0.5"; sha256="005kswkpp3qmrg5ij8999xambyyry5wajkawiwhv45niyi2hlkxv"; depends=[clue doParallel foreach ggplot2 gridExtra mvtnorm plyr Rcpp reshape2]; };
+  lsbs = derive2 { name="lsbs"; version="0.1"; sha256="14aq80zg89lq7hffv1v1m4n7hbzqzxkazcga4y2fq40ij3v7kv6n"; depends=[ks Matrix numDeriv]; };
   lsdv = derive2 { name="lsdv"; version="1.1"; sha256="0rl1xszr9r8v71j98gjpav30n2ncsci19hjlc9flzs1s20sb1xpr"; depends=[]; };
   lsei = derive2 { name="lsei"; version="1.2-0"; sha256="1xl06fb3is744pxlh42wx5hn1h0ab1k31wnmsmh0524kxzcyp0a7"; depends=[]; };
   lshorth = derive2 { name="lshorth"; version="0.1-6"; sha256="0nbjakx0zx4fg09fv26pr9dlrbvb7ybi6swg84m2kwjky8399vvx"; depends=[]; };
   lsl = derive2 { name="lsl"; version="0.5.6"; sha256="1hwzklx1qp5ljc059j2hridg3caw4cgn7rbqs8xh2arzcvqdw3rb"; depends=[ggplot2 lavaan reshape2]; };
-  lslx = derive2 { name="lslx"; version="0.6.2"; sha256="0girzjmkmqym5bnw492991smyhvlz7xw70n8hlswpa4lw3x15q2n"; depends=[ggplot2 lavaan R6 Rcpp RcppEigen]; };
-  lsm = derive2 { name="lsm"; version="0.1.6"; sha256="1j68jvb7gvgr77wpq1gzh1jw3cs94im1zrlnvw4jnbgbzsmpql99"; depends=[]; };
+  lslx = derive2 { name="lslx"; version="0.6.3"; sha256="1a6s1a2g87h1fd0w5ckjgmanqpvwfp6hh8mshc61917w3g8y1rdg"; depends=[ggplot2 lavaan R6 Rcpp RcppEigen]; };
+  lsm = derive2 { name="lsm"; version="0.1.8"; sha256="0h7gyc4wb0y3hvs21h22l57czdd3xfycg400ncz5c9s63r47wzx3"; depends=[]; };
   lsmeans = derive2 { name="lsmeans"; version="2.27-62"; sha256="1db9ldk8maj8qr2ha3aa5bz01wv4irkiw561fzjcm9slb0iz1k7z"; depends=[coda estimability multcomp mvtnorm nlme plyr xtable]; };
   lspartition = derive2 { name="lspartition"; version="0.1"; sha256="1c2wp9yl0jzvbh181flzywwqmm6xr5jg9qbfibw4ja9wf6xnfx8w"; depends=[combinat ggplot2 MASS matrixStats mgcv pracma]; };
   lspline = derive2 { name="lspline"; version="1.0-0"; sha256="0bc1nfpp1r5fi8rrg295k4r8pm03baqplrzwmk3sn4kdbp0apvgk"; depends=[]; };
-  lspls = derive2 { name="lspls"; version="0.2-1"; sha256="1g27fqhnx9db0zrxbhqr76agvxy8a5fx1bfy58j2ni76pki1y4rl"; depends=[pls]; };
+  lspls = derive2 { name="lspls"; version="0.2-2"; sha256="1cmffkyc881659l9m1miwhr3jfpwb0xb9n5chg317vcm8l9r4wcn"; depends=[pls]; };
   lsplsGlm = derive2 { name="lsplsGlm"; version="1.0"; sha256="1qh68r033fwq1hc19h2srl1k6znvvvrcp38ghxadsksjfxllvniy"; depends=[]; };
   lsr = derive2 { name="lsr"; version="0.5"; sha256="0q385a3q19i8462lm9fx2bw779n4n8azra5ydrzw59zilprhn03f"; depends=[]; };
   lss = derive2 { name="lss"; version="0.52"; sha256="1fvs8p9rhx81xfn450smnd0i1ym06ar6nwwcpl74a66pfi9a5sbp"; depends=[quantreg]; };
+  ltable = derive2 { name="ltable"; version="1.0"; sha256="1sx6bknbfkays899yq7wqpvc7izz757smaw9g9i7wii7d7a75plr"; depends=[]; };
   ltbayes = derive2 { name="ltbayes"; version="0.4"; sha256="0kv5k56hmc1m7bv5pmmmk46822szsgwqgpwydn0x56az7xn6hjk6"; depends=[mcmc MHadaptive numDeriv]; };
   ltm = derive2 { name="ltm"; version="1.1-1"; sha256="1qrgzwx5l58qf5rfp1knxc84r0g943q5sdr3ky74zzwpnmrf2vf7"; depends=[MASS msm polycor]; };
-  ltmle = derive2 { name="ltmle"; version="1.0-1"; sha256="0g3nybhxz7mivqkzvlzkasc1m489s4fsi4874wvlhqg3x3mww0x9"; depends=[Matrix matrixStats speedglm]; };
+  ltmle = derive2 { name="ltmle"; version="1.1-0"; sha256="1mlsggl0vdnlgf8j0bjmh4zrfdpmkfi9jhar35npxz9r0yfjmw8f"; depends=[Matrix matrixStats speedglm]; };
   ltsa = derive2 { name="ltsa"; version="1.4.6"; sha256="10wmw9r00400ng2zlysd8jqgypjclshxj83x32002j2a9cz4f186"; depends=[]; };
   ltsbase = derive2 { name="ltsbase"; version="1.0.1"; sha256="16p5ln9ak3h7h0icv5jfi0a3fbw5wdqs3si69sjbn8f5qs2hz7yp"; depends=[MASS robustbase]; };
-  ltsk = derive2 { name="ltsk"; version="1.0.5"; sha256="0x142w2l6qaqw1kmx5kix7lkadaw2kl8dqx11d091vqj2imi9wlr"; depends=[fields gstat sp]; };
   ltxsparklines = derive2 { name="ltxsparklines"; version="1.1.2"; sha256="1jnygg7wm2768lrrzball8rn8f60xy4nc3a18h4d32jpnbhifj13"; depends=[]; };
   lubridate = derive2 { name="lubridate"; version="1.7.4"; sha256="14a823il77w3wmmnzr89vwrqp50y56dh5raycnaw6c8nv5xsh32i"; depends=[Rcpp stringr]; };
   luca = derive2 { name="luca"; version="1.0-5"; sha256="1jiqwibkrgga4ahz0qgpfkvrsxjqc55i2nwnm60xddb8hpb6a6qx"; depends=[genetics survival]; };
-  lucid = derive2 { name="lucid"; version="1.4"; sha256="1kwl9h7ynp8nhny51xskrbgc3060bawxjkdijhsjzss2hbbygwds"; depends=[nlme]; };
+  lucid = derive2 { name="lucid"; version="1.6"; sha256="0acsnvxvr9qr6ib48dg6byqvfdw5rl65j72nvv3pvvisqj22b0pg"; depends=[nlme]; };
   lucr = derive2 { name="lucr"; version="0.2.0"; sha256="0v5g72cl9fg3b3ix34bsmjwwqrnm4ivgcd5mm98c5jd8rrz1xkwq"; depends=[httr Rcpp]; };
   ludic = derive2 { name="ludic"; version="0.1.6"; sha256="0srs3bx9cw89mlpg8b8vcmz2gnsv729j3n23pnnxgbh2w7xf705b"; depends=[fGarch landpred Matrix Rcpp RcppArmadillo]; };
   lue = derive2 { name="lue"; version="0.2.1"; sha256="0is5rd1dz91bzphmfbbzi3s6rgc5g9qza2r26k70xs67dgn0qbjq"; depends=[ncdf4 raster]; };
   lulcc = derive2 { name="lulcc"; version="1.0.2"; sha256="1vlaidyqgx5vnf8w2y1a1jmmq7z4195avnv1mryhh414r5r1kpy0"; depends=[lattice raster rasterVis ROCR]; };
-  lumberjack = derive2 { name="lumberjack"; version="0.2.0"; sha256="0yn6482wrwinabys3awp0jjnzs6mnv29jjpvr980m1jm15nwva4g"; depends=[R6]; };
+  lumberjack = derive2 { name="lumberjack"; version="0.3.0"; sha256="00br82x9n6x96ksqqgahc1ydffl9cv8lysm57pk2mxm0fzbcph2p"; depends=[R6]; };
   lunar = derive2 { name="lunar"; version="0.1-04"; sha256="0nkzy6sf40hxkvsnkzmqxk4sfb3nk7ay4rjdnwf2zym30qax74kk"; depends=[]; };
   lutz = derive2 { name="lutz"; version="0.2.0"; sha256="1ypi61b0l5pig2lvvq9lmqkqcsxhnf154lxridp0amv5rcmf2fxy"; depends=[V8]; };
   luzlogr = derive2 { name="luzlogr"; version="0.2.0"; sha256="0n0cm94aianwcypa0gwdjvyy3dwbkfv6zi1gq2jn57b41fg20lq5"; depends=[assertthat]; };
   lvec = derive2 { name="lvec"; version="0.2.2"; sha256="0n1l26n4khlalqd0b9bi7vc3kr5jh6mr56ca0rmnnl6bl9742nr5"; depends=[BH Rcpp]; };
-  lvm4net = derive2 { name="lvm4net"; version="0.2"; sha256="0al0answp3rngq69bl3ch6ylil22wdp1c047yi5gbga853p7db0c"; depends=[ellipse ergm igraph MASS network]; };
+  lvm4net = derive2 { name="lvm4net"; version="0.2.1"; sha256="0syl3bzrmpm960b2fx893xw79d7lvlhr94r5kdq9z6jayvcyq66c"; depends=[ellipse ergm igraph MASS network]; };
   lvnet = derive2 { name="lvnet"; version="0.3.3"; sha256="14jik7kxljlpk0fp3gmy0i6by78higmqz1n88dy8wczcvms66ci0"; depends=[corpcor dplyr glasso lavaan Matrix mvtnorm OpenMx psych qgraph semPlot]; };
   lvplot = derive2 { name="lvplot"; version="0.2.0"; sha256="01sisj2vbx2yb5w9cjzyaf9j46vh4kkw05xccq1f7wmsg69zmj6b"; depends=[ggplot2 RColorBrewer]; };
   lwgeom = derive2 { name="lwgeom"; version="0.1-4"; sha256="0x58a04sklrr6vr38hbd2900b3bigdfj7zyk6pzj9y7yy5mr2cjg"; depends=[Rcpp sf units]; };
@@ -8221,12 +8586,12 @@ in with self; {
   m2b = derive2 { name="m2b"; version="1.0"; sha256="0agzw67mmwrw1f61yn24z5w1pgjssdapg3li0a53i3ylnij45mzr"; depends=[caret caTools e1071 geosphere ggplot2 randomForest]; };
   m2r = derive2 { name="m2r"; version="1.0.0"; sha256="07zrqhva00jsp9da9ryzi8pjdrwri2mw0mqgg91r3rnl7id8safq"; depends=[gmp memoise mpoly pryr stringr]; };
   mAr = derive2 { name="mAr"; version="1.1-2"; sha256="0i9zp8n8i3fxldgvwj045scss533zsv8p476lsla294gp174njr7"; depends=[MASS]; };
-  mBvs = derive2 { name="mBvs"; version="1.1"; sha256="0nkm0yyzl3ajjfhprnkr7d4mkvwd86lf6ic9cyqx76isfwwz3wyq"; depends=[]; };
+  mBvs = derive2 { name="mBvs"; version="1.3"; sha256="0vxwdi45pd79c3lz507wlw2alvf501q27lwvd34j6y68p3vyv1vj"; depends=[]; };
   mExplorer = derive2 { name="mExplorer"; version="1.0.0"; sha256="1563d9r7f25vw5vsph21z3dwz9n40dpaiyx28ay1bbp5i1x2l3rb"; depends=[nnet qusage]; };
-  mFilter = derive2 { name="mFilter"; version="0.1-3"; sha256="1cz9d8447iiy7sq47civ1lcjafqdqs40lzxm2a4alw4wy57hc2h6"; depends=[]; };
+  mFilter = derive2 { name="mFilter"; version="0.1-4"; sha256="0zfsa301f1sh1wqg9ap63n5p3952y6b37c4whi2sijinfkx4q2vv"; depends=[]; };
   mGSZ = derive2 { name="mGSZ"; version="1.0"; sha256="08l98i75h2h8kx9ksvzp5qr8jhf0l6n4j7rg8fcn7hk8chn8v5zh"; depends=[Biobase GSA ismev limma MASS]; };
   mHG = derive2 { name="mHG"; version="1.1"; sha256="1rz5ncrvvv9h9grls15apa63v2nh9j87fmp4mwjjil37jx6a5zki"; depends=[]; };
-  mMPA = derive2 { name="mMPA"; version="0.1.0"; sha256="1p9rzk1x5ldb3afr53f195vb4jdj8kw50rmv961k2jsw128mrzr5"; depends=[]; };
+  mMPA = derive2 { name="mMPA"; version="1.2.0"; sha256="0g4zjknz52fpk7f436j95aw93aa8q2jwcrb1pqkm294kr276nnd9"; depends=[]; };
   mQTL = derive2 { name="mQTL"; version="1.0"; sha256="0k80xvkr0b0mp3bj2s558fjxi2zf4k7ggnw6hsjm8lr84i108dks"; depends=[MASS outliers qtl]; };
   mRMRe = derive2 { name="mRMRe"; version="2.0.7"; sha256="1njapjphy4b8nvrsnzrf2nbfp7mjizb7wlxgx1igfqncfhbskqfn"; depends=[igraph survival]; };
   mRchmadness = derive2 { name="mRchmadness"; version="1.0.0"; sha256="0f6cb3d5dhp6b0dd0fshplp75jjbhx3v9r53pa8gmcfd10hvbqba"; depends=[dplyr glmnet Matrix rvest shiny xml2]; };
@@ -8234,6 +8599,7 @@ in with self; {
   maGUI = derive2 { name="maGUI"; version="2.2"; sha256="0b0iprpb4mnaj4lpaismr0f1rnq4m0b61imcx8mrffw9mx45qapv"; depends=[affy amap annotate beadarray Biobase BiocInstaller Biostrings Category convert genefilter GEOmetadb GEOquery globaltest GO_db GOstats graph gWidgets gWidgetsRGtk2 impute KEGGgraph KEGGREST limma lumi marray oligo pdInfoBuilder RBGL Rgraphviz RGtk2 RSQLite simpleaffy ssize WGCNA]; };
   maRketSim = derive2 { name="maRketSim"; version="0.9.2"; sha256="1cq17zjwyf4i5lcqgxqkw805s4mr6qp89blgpmpxy8gdrbfj93m4"; depends=[]; };
   maSAE = derive2 { name="maSAE"; version="0.1-5"; sha256="0v0vlj41j3ddyxv8lld39k1ryrdjin7r6bj13x2agbklb1fd4an1"; depends=[]; };
+  mable = derive2 { name="mable"; version="1.0"; sha256="1ny8nfnyqj9c1n4b0m34kadpmnb4k2d81nd66cqxnz8dm9129vqj"; depends=[]; };
   maboost = derive2 { name="maboost"; version="1.0-0"; sha256="18d36cgvn8p75nidfr6al458jbzwc1i7x77y1ks50y9phrz3wf65"; depends=[C50 rpart]; };
   macc = derive2 { name="macc"; version="1.0.1"; sha256="1qj4mlikbqrxa6m46527xmxdbk7b3l95z6jdgpmi0ifywjiv52a4"; depends=[car lme4 MASS nlme optimx]; };
   machQA = derive2 { name="machQA"; version="0.1.4"; sha256="1rdrjy9sxql2c9y691a1jrmgsv7m1ihsschixxb6wc7aahf7mav6"; depends=[machina plyr]; };
@@ -8241,32 +8607,33 @@ in with self; {
   macleish = derive2 { name="macleish"; version="0.3.2"; sha256="1kna1wq3p6xfzfdhw8dpdfvy4l656xcrra1f0ir86a815pm2a8l3"; depends=[dplyr etl lubridate readr rgdal rgeos sp]; };
   mada = derive2 { name="mada"; version="0.5.8"; sha256="17d41kpxjf6h8j83w6jhxm71f03nc8i2aw0xaqzrpcf5rxxy8wv8"; depends=[ellipse mvmeta mvtnorm]; };
   maddison = derive2 { name="maddison"; version="0.1"; sha256="1ji51wnj0ybjd30b4bwn5npyswrmcfrbxcmdlngwzvca1knh8g1c"; depends=[]; };
-  maditr = derive2 { name="maditr"; version="0.5.1"; sha256="029jhapxssnrnmdf8cmdaw87gdd970538jvz6cq9k9iavw7zki7y"; depends=[data_table magrittr]; };
-  madness = derive2 { name="madness"; version="0.2.3"; sha256="0qmqgrjxb0853m9kdi8cl1b9q9dljdi2zylw22asfv77f323413z"; depends=[expm Matrix matrixcalc]; };
+  maditr = derive2 { name="maditr"; version="0.6.0"; sha256="1h2qvl84v0lp4fnsraar9kvlglifxjbpsascnrz3db5lrn1w53j0"; depends=[data_table magrittr]; };
+  madness = derive2 { name="madness"; version="0.2.5"; sha256="1cdryb65hlqc5b1xm5xs5r3gv8zd4kq17q79345b0p8r0m6addip"; depends=[expm Matrix matrixcalc]; };
   madr = derive2 { name="madr"; version="1.0.0"; sha256="0lzg75kphz4a0w6n0jbsq87g72jvrbkyas4j813mryq2nv4lmsl4"; depends=[]; };
   madrat = derive2 { name="madrat"; version="1.22.1"; sha256="0wk2svhi4209p8ab8i2g9q22kswpisphb2a9ln5lzwdhnryk4ya9"; depends=[digest magclass spam stringr]; };
   mads = derive2 { name="mads"; version="0.1.5"; sha256="1ac34iff9hvl1bxk3gs5s3i311g9y59nd6v9jhvnfd6wfhck7krs"; depends=[mrds]; };
   madsim = derive2 { name="madsim"; version="1.2.1"; sha256="11gfyimbz363p5xy1x6rsz5fcgzcr55myc5aaz5lazjkcnfn17aq"; depends=[]; };
   mafs = derive2 { name="mafs"; version="0.0.3"; sha256="1apacrk8y5b5ids62vd1kn2k28bya9pydxxmdw2dhjyzkgrakdhn"; depends=[cmprsk colorspace CombMSC Epi etm forecast forecastHybrid fracdiff ggplot2 ggseas gtable munsell numDeriv plyr quadprog Rcpp scales tictoc tidyr timeDate tseries zoo]; };
   magclass = derive2 { name="magclass"; version="4.51.1"; sha256="1p4pbwjkn9ic3vqjh9m4b18s78f8wx0815n4dyg9pin8p14klzil"; depends=[abind maptools ncdf4 reshape2 sp]; };
-  magic = derive2 { name="magic"; version="1.5-8"; sha256="083cgpp3v03li0h8597b3g21pd9lkbmn9pyssblnhc800mpc52vz"; depends=[abind]; };
+  magic = derive2 { name="magic"; version="1.5-9"; sha256="0snmdh6vk0p6ar1swsihisinxrx7l8371dri5lk0z24ysgr5w7gs"; depends=[abind]; };
   magicLamp = derive2 { name="magicLamp"; version="0.1.0"; sha256="1nfcnbqd6vawz8l3vgkbhmm462xdvaa4pn6axzmz8hl05xv2k3cv"; depends=[httr tibble]; };
   magicaxis = derive2 { name="magicaxis"; version="2.0.3"; sha256="08nkf9k2ijlm52ybncfiwrghy911wpvwpvdvllcz2d4slk1vdakj"; depends=[celestial mapproj MASS plotrix sm]; };
   magicfor = derive2 { name="magicfor"; version="0.1.0"; sha256="07l33fczr1x42sfxrsqq4q6r65sdflin6l8f5cgclnvx1858jdip"; depends=[]; };
-  magick = derive2 { name="magick"; version="1.9"; sha256="1z6wci73kaqp3ky0pfzq9mifrhs3fdsnlzqx57c3f7aryh6f2ry2"; depends=[curl knitr magrittr Rcpp]; };
+  magick = derive2 { name="magick"; version="2.0"; sha256="18y465325mhf48x2jn3jz9khwq1z2aj13wfbdkv8k3hln1sd572m"; depends=[curl magrittr Rcpp]; };
   magree = derive2 { name="magree"; version="1.0"; sha256="1qkd6p5g3aigcb0f4d08gc5323alvahzmazm3bzsmz1w033xd1hh"; depends=[]; };
   magrittr = derive2 { name="magrittr"; version="1.5"; sha256="1s1ar6rag8m277qcqmdp02gn4awn9bdj9ax0r8s32i59mm1mki05"; depends=[]; };
   mail = derive2 { name="mail"; version="1.0"; sha256="1m89cvw5ba4d87kp2dj3f8bvd6sgj9k56prqmw761q919xwprgw6"; depends=[]; };
   mailR = derive2 { name="mailR"; version="0.4.1"; sha256="1bfh3fxdqx9f9y3fgklxyslpcvhr9gcj7wsamaxzgrcsaxm8fdlw"; depends=[R_utils rJava stringr]; };
   makeFlow = derive2 { name="makeFlow"; version="1.0.2"; sha256="0r7a0klgx144rnks0fhjflnf8vfyyx2544n86nnxkp6cdvw0b4pw"; depends=[dplyr RColorBrewer]; };
+  makeParallel = derive2 { name="makeParallel"; version="0.1.1"; sha256="1zm8k3gzxcirq221lh1vbxsjym68vc5s58lxd03s194pgixbwydr"; depends=[CodeDepends codetools whisker]; };
   makeProject = derive2 { name="makeProject"; version="1.0"; sha256="09q8xa5j4s5spgzzr3y06l3xis93lqxlx0q66s2nczrhd8nrz3ca"; depends=[]; };
-  makedummies = derive2 { name="makedummies"; version="1.1.1"; sha256="0aqf7hfbajfsszmqx1id8pp8yj6fzvdsdis9z4s87llf0vxq4agl"; depends=[]; };
+  makedummies = derive2 { name="makedummies"; version="1.1.2"; sha256="122s8cizycbnqc00d1njhnn3xbz9vg42f8vjqgzc9k5dhxx4v8n1"; depends=[]; };
   malani = derive2 { name="malani"; version="1.0"; sha256="1jps28gfkiysr356ackxf1my5xz6rpx3a2bv68pziy2614hrqbs9"; depends=[e1071]; };
-  malariaAtlas = derive2 { name="malariaAtlas"; version="0.0.1"; sha256="1c1bvfs1azvlci2yrgw5xlr460fdjwikm3vsdfz8lj1xzs1w220c"; depends=[curl dplyr ggplot2 gridExtra httr raster rgdal sp stringi tidyr xml2]; };
+  malariaAtlas = derive2 { name="malariaAtlas"; version="0.0.2"; sha256="07hmnaacqkywalsajx5mzql7sil0196k930faaha0ync09idz7kz"; depends=[curl dplyr ggplot2 gridExtra httr raster rgdal rlang sp stringi tidyr xml2]; };
   mallet = derive2 { name="mallet"; version="1.0"; sha256="06rksf5nvxp4sizgya7h4sb6fgw3yz212a01dqmc9p5a5wqi76x0"; depends=[rJava]; };
   managelocalrepo = derive2 { name="managelocalrepo"; version="0.1.5"; sha256="180b7ikas1kb7phm4l2z1d8wi45wi0qyz2c8rl8ml3f71b4mlzgc"; depends=[assertthat stringr]; };
   mandelbrot = derive2 { name="mandelbrot"; version="0.2.0"; sha256="04a288jj8h1a04r584a02wg9dm3c6zifhqwj964ybsvgb4m6g99s"; depends=[reshape2]; };
-  manet = derive2 { name="manet"; version="1.0"; sha256="1hb5mv05zcv4s2bpyh3vgkyf4r78fyvcwl3p1kwlwqn9cv1lgci2"; depends=[combinat igraph MCMCpack]; };
+  manet = derive2 { name="manet"; version="2.0"; sha256="1dnacgkdjmn7yiqk71qx5jgfipbpvqfdnrdd8wm0b9p8kgw4x7n4"; depends=[combinat igraph mclust MCMCpack]; };
   mangoTraining = derive2 { name="mangoTraining"; version="1.0-7"; sha256="0lw46j44jhdcyh079a7zjmxcnv5c6qsfachinlwv3ild1gwggr3p"; depends=[]; };
   manhattanly = derive2 { name="manhattanly"; version="0.2.0"; sha256="185fkakx4v35n4gmlpk2kfm2bm8p320q4khkw936m09zx3aqz398"; depends=[ggplot2 magrittr plotly]; };
   manifestoR = derive2 { name="manifestoR"; version="1.3.0"; sha256="1bxmlg6fmr4ky9m7b65rrylspwhwc8k9s1cbxnx9dyl33wh39ci6"; depends=[base64enc dplyr DT functional htmltools htmlwidgets httr jsonlite magrittr NLP psych tibble tm zoo]; };
@@ -8275,7 +8642,8 @@ in with self; {
   mapReasy = derive2 { name="mapReasy"; version="1.0"; sha256="13va0z967ckwxnnianki5aj66km0x6r37nj4mz9qd3b0bps4g2kj"; depends=[Hmisc rgdal sp]; };
   mapStats = derive2 { name="mapStats"; version="2.4"; sha256="18pp1sb9p4p300ffvmzjrg5bv1i7f78mhpggq83myc26c3a593na"; depends=[classInt colorspace Hmisc lattice maptools RColorBrewer reshape2 sp survey]; };
   mapdata = derive2 { name="mapdata"; version="2.3.0"; sha256="0xnxh73rgcq55zrw81a2bq8yd67bxc2rafp4shf6nyrqj04iip0y"; depends=[maps]; };
-  mapedit = derive2 { name="mapedit"; version="0.4.1"; sha256="1dy87kmwra917716r99hp139fbxy3z0cx03cw61b832isizd0b51"; depends=[dplyr htmltools htmlwidgets jsonlite leaflet leaflet_extras mapview miniUI sf shiny]; };
+  mapdeck = derive2 { name="mapdeck"; version="0.1.0"; sha256="1d93gg0s0xn4gqrrc6p94fppyhqibfjsmxml2ck6skacryd40wm3"; depends=[googlePolylines htmltools htmlwidgets jsonlite magrittr scales shiny viridisLite]; };
+  mapedit = derive2 { name="mapedit"; version="0.4.3"; sha256="0ybd9vbdpr3i3wfpcn36dqj3n9i885xycris2nwgxzc9dxb5ad7a"; depends=[dplyr htmltools htmlwidgets jsonlite leaflet leaflet_extras mapview miniUI sf shiny]; };
   mapfit = derive2 { name="mapfit"; version="0.9.7"; sha256="16a318bz3my27qj0xzf40g0q4bh9alg2bm6c8jbwgswf1paq1xmx"; depends=[Matrix]; };
   mapfuser = derive2 { name="mapfuser"; version="0.1.2"; sha256="1q7l6rfs6dv76ifizfqq4pdpjpb2zwzd3vvrnhdzh8vw2mrlqcjg"; depends=[doParallel dplyr foreach ggplot2 igraph lazyeval LPmerge mgcv plotly stringi tidyr visNetwork]; };
   mapmisc = derive2 { name="mapmisc"; version="1.7.2"; sha256="0w0yvdnxk6gjcc86b6imq764va9f9hjan3ayw7qrbjpqx16fs7dx"; depends=[raster sp]; };
@@ -8284,12 +8652,12 @@ in with self; {
   mapr = derive2 { name="mapr"; version="0.4.0"; sha256="169ah9v7cpw3hmaj6n575gi1zwazf4vh59n46zghb1x68nc2gqs0"; depends=[data_table ggplot2 gistr jsonlite leaflet RColorBrewer rworldmap sp spocc]; };
   maps = derive2 { name="maps"; version="3.3.0"; sha256="05i2ppl5z4p8rawgqmy3z4ia05fcblpq1vvrmrkgkkpdlhczx6hr"; depends=[]; };
   mapsRinteractive = derive2 { name="mapsRinteractive"; version="0.1.0"; sha256="1qjc5hffrk2bjw6ihlna1h0k3q9s9i19l0q0mgvcm9wpjy4c8gra"; depends=[gstat raster rgdal rgeos sp]; };
-  mapsapi = derive2 { name="mapsapi"; version="0.3.5"; sha256="0v33kkny98xql6m6rp2xh39rsp00r1crpin8gqw5wh5x28n20sna"; depends=[bitops magrittr plyr sf xml2]; };
-  maptools = derive2 { name="maptools"; version="0.9-2"; sha256="075lmb3b62171cw2dg8fv1vwmvfzg39r1ji7jwb8s5k9dz88ry1v"; depends=[foreign lattice sp]; };
+  mapsapi = derive2 { name="mapsapi"; version="0.3.7"; sha256="1mf971himbcmyfbbjppp1clwdi102kh5cvgyzpfwj9rsgx4mqjfw"; depends=[bitops magrittr plyr sf xml2]; };
+  maptools = derive2 { name="maptools"; version="0.9-4"; sha256="1753kgyc4kmbb5h6knz5wgvvvj8v77kzm8lz0kwz05m5k3spa24k"; depends=[foreign lattice sp]; };
   maptpx = derive2 { name="maptpx"; version="1.9-2"; sha256="1i5djmjg0lsi7xlkbvn90njq1lbyi74zwc2nldisay4xsbgqg7fj"; depends=[slam]; };
   maptree = derive2 { name="maptree"; version="1.4-7"; sha256="1k7v84wvy6wz6g0dyiwvd3lvf78rlfidk60ll4fz7chvr2nrqdp4"; depends=[cluster rpart]; };
-  mapview = derive2 { name="mapview"; version="2.4.0"; sha256="0gm9swj2i9f6wk0lc4kpr2f1171lys9pbycw272h3l984x8syy61"; depends=[base64enc brew gdalUtils htmltools htmlwidgets lattice leaflet png raster Rcpp satellite scales sf sp svglite uuid viridisLite webshot]; };
-  mar1s = derive2 { name="mar1s"; version="2.1"; sha256="0psjva7nsgar5sj03adjx44pw0sdqnsd96m4g6k8d76pv30m1g7l"; depends=[cmrutils fda zoo]; };
+  mapview = derive2 { name="mapview"; version="2.6.0"; sha256="1k8y9kj3qrih3fn0xw7nz0irhprdv8fqpxjad2djsvabmn11l51b"; depends=[base64enc brew htmltools htmlwidgets lattice leaflet png raster Rcpp satellite scales sf sp stars svglite uuid viridisLite webshot]; };
+  mar1s = derive2 { name="mar1s"; version="2.1.1"; sha256="1ljkvgxrramfx1rnp2rg6516mjxaa6s96amrnmqymnyjz7wlf37l"; depends=[cmrutils fda zoo]; };
   march = derive2 { name="march"; version="1.4"; sha256="1wfhm33k2j5yim56sg0wd02ypfhlp9fc138vmdsdjp6nh4y23hnj"; depends=[]; };
   marcher = derive2 { name="marcher"; version="0.0-2"; sha256="0hcxbfrwniih4kvx5sxhlffz1pc87kf52v8hvaf193rhhdykis5q"; depends=[magrittr Matrix minpack_lm mvtnorm numDeriv plyr RColorBrewer scales zoo]; };
   marelac = derive2 { name="marelac"; version="2.1.9"; sha256="07xhlsdzz2j5smh3v4hpm8zp4ljg9aa3i67j65hs1cq27q1jg1n7"; depends=[seacarb shape]; };
@@ -8301,27 +8669,29 @@ in with self; {
   marked = derive2 { name="marked"; version="1.2.1"; sha256="138m1clidyhahpz111iblff2w44m8zp0302vcj46frk1c60c46qi"; depends=[coda expm lme4 Matrix numDeriv optimx R2admb Rcpp TMB truncnorm]; };
   markmyassignment = derive2 { name="markmyassignment"; version="0.8.1"; sha256="1y388s73b1zs482d1d7z40kg4hizp46lc3279xspm2ryx4m49mzj"; depends=[checkmate codetools httr lazyeval rlang testthat yaml]; };
   markophylo = derive2 { name="markophylo"; version="1.0.6"; sha256="1gyj3ykwh4ljrb5s80hihy7wl89y3p4xkckspvv4ynl9lnsbm7cs"; depends=[ape numDeriv phangorn Rcpp RcppArmadillo]; };
-  markovchain = derive2 { name="markovchain"; version="0.6.9.11"; sha256="0mmsj5vskbp7cs28iak5wmvx6ixq9xdd14niv7iixa19mmwc8p1d"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; };
+  markovchain = derive2 { name="markovchain"; version="0.6.9.12"; sha256="042qwp0zywbqz99sp70ykjlckfpch5p02szah651x1inp2im8fc6"; depends=[expm igraph matlab Matrix Rcpp RcppArmadillo RcppParallel]; };
   marl = derive2 { name="marl"; version="1.0"; sha256="0rndnf3rbcibv3gsrw1kfp5zhg37cw9wwlz0b7dbwprd0m71l3pm"; depends=[]; };
-  marmap = derive2 { name="marmap"; version="1.0"; sha256="187zqmpdd4kl5dviphfzdhjlaa9bss1gx4wxxc8zgn4q1g66f4c2"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; };
+  marmap = derive2 { name="marmap"; version="1.0.2"; sha256="03xmp7jz2jja7m92yczc2nlcyv4qlcy7lnj3nk5wb3alh1vxlyga"; depends=[adehabitatMA DBI gdistance geosphere ggplot2 ncdf4 plotrix raster reshape2 RSQLite shape sp]; };
   marqLevAlg = derive2 { name="marqLevAlg"; version="1.1"; sha256="1wmqi68g0flrlmj87vwgvyxap0miss0n42qiiw7ypyj4jw9kwm8j"; depends=[]; };
-  mase = derive2 { name="mase"; version="0.1.1"; sha256="1s8hcsz3ja3rghsv0fz82mlz4sx7dwx8y7h97minhrnj9aby9g82"; depends=[boot dplyr foreach glmnet magrittr MASS Matrix Rdpack rpms survey]; };
+  mase = derive2 { name="mase"; version="0.1.2"; sha256="1023xvv6yngbc183hb13057spjildywqd0jw2w9jway3zv4dbw9v"; depends=[boot dplyr foreach glmnet magrittr Matrix Rdpack rpms survey]; };
   mason = derive2 { name="mason"; version="0.2.6"; sha256="01ppc7f18kf4xv4lrhib0cfm85v658grmxpny3h3kdb4pi4rbspy"; depends=[broom dplyr lazyeval magrittr tidyr]; };
   matR = derive2 { name="matR"; version="0.9.1"; sha256="1qw2vqmpq7gc3dmr9r000ccjj7xa0h82waxnvryz3l17ggryyjjm"; depends=[BIOM_utils MGRASTer]; };
   matchMulti = derive2 { name="matchMulti"; version="1.1.7"; sha256="0k5psmjzcyr7pm603vni7w2hvslck05r81cngm26pql2prdrv5yk"; depends=[coin Hmisc MASS mvtnorm plyr rcbsubset weights]; };
   matchbook = derive2 { name="matchbook"; version="1.0.7"; sha256="0xfqg8z2zkn215kqmjjkqdwrgsk7cn4jdpxfgd6razhcbvflg48j"; depends=[]; };
-  matchingMarkets = derive2 { name="matchingMarkets"; version="0.3-5"; sha256="083gnqjxvzgqd0lvg13qwzw3cp1imp4xn2nacspfxqg4878jjpn3"; depends=[lattice lpSolve partitions Rcpp RcppArmadillo RcppProgress rJava]; };
+  matchingMarkets = derive2 { name="matchingMarkets"; version="0.3-6"; sha256="1vl9gmz155l6qrz0sqpirwhbd99j15zxp7gj8q6m88y5dpnhpkqs"; depends=[lattice lpSolve partitions Rcpp RcppArmadillo RcppProgress rJava]; };
   matchingR = derive2 { name="matchingR"; version="1.3.0"; sha256="1rpw5a52alh5diiqr7f87vhpgp3w3f8lg8wkaqvr5idid9fkll1i"; depends=[Rcpp RcppArmadillo]; };
   matconv = derive2 { name="matconv"; version="0.3.2"; sha256="0vnmqz5vzv5n0cfpgr30gkl0pv8p2b5cp3ap6mn01sxd671lx38z"; depends=[]; };
   mateable = derive2 { name="mateable"; version="0.3.1"; sha256="1ka9xxicibpfg6k3njq5f5576jwj734r1mb46a2cmiyq676ks7pp"; depends=[FNN Rcpp sn]; };
+  mathgraph = derive2 { name="mathgraph"; version="0.9-14"; sha256="11wcnjligjc0m0ibi7v5f9w4j2g0fmw33za8407d9fqdb0i5pf60"; depends=[]; };
   mathpix = derive2 { name="mathpix"; version="0.3.0"; sha256="1a49yda4r9a6pbs641ch2kmxg3pf8zxfrfi30r19z6g15jfgdrvf"; depends=[base64enc httr magick purrr rstudioapi texPreview]; };
   matie = derive2 { name="matie"; version="1.2"; sha256="1ymx49cyvz63imqw5n48grilphiqvvdirwsrv82p7jgxdyav2xv0"; depends=[cba dfoptim gplots igraph mvtnorm seriation]; };
   matlab = derive2 { name="matlab"; version="1.0.2"; sha256="0m21k2vzbc5d3c93p2hk4208xyd2av2slg55q5j1ibjidiryqgd2"; depends=[]; };
-  matlabr = derive2 { name="matlabr"; version="1.5.0"; sha256="0gy639fv0b85h4z96b2b3m635q4w62q63kfxfqny3pwr0r5vsc2p"; depends=[stringr]; };
+  matlabr = derive2 { name="matlabr"; version="1.5.2"; sha256="1ba6cajnzldb1gmn7rf0b198h6mdh58r3frm0z0cmvbinspwz3x7"; depends=[stringr]; };
   matlib = derive2 { name="matlib"; version="0.9.1"; sha256="03991ckrfk663pdi9q2a4sms9csr1dkr075dsycqggr96yp1cwh8"; depends=[car MASS rgl xtable]; };
   matpow = derive2 { name="matpow"; version="0.1.1"; sha256="1a6q21ba16qfdpykmjwgmrb1kkvvyx48qg8cbgpdmch0vhibcgcp"; depends=[]; };
   matrixLaplacian = derive2 { name="matrixLaplacian"; version="1.0"; sha256="1ixqdv3sz3sc79wn3vqhlq79j7x7cvl878m5hgvbcg6klfvlmmci"; depends=[scatterplot3d]; };
-  matrixStats = derive2 { name="matrixStats"; version="0.53.1"; sha256="0bkiz5fm09d3512mfr2ymj9qsb1b8aic5l5m6fkaf5j7nsgvqw6z"; depends=[]; };
+  matrixProfile = derive2 { name="matrixProfile"; version="0.5.0"; sha256="0nd54k878xf7hzwxawh03c3na4jfvb68afarkwrmmffjlp3i8a9g"; depends=[fftw signal TTR zoo]; };
+  matrixStats = derive2 { name="matrixStats"; version="0.54.0"; sha256="0vx00ldsg2zvdrjn49jxczk2c9iaabgvzgpdka5j02ihh7hv83cg"; depends=[]; };
   matrixTests = derive2 { name="matrixTests"; version="0.1.0"; sha256="0784wfp14z7lh6ylzgh9kvzs5gwapfs7ksx63jf3qwb95zfwyixx"; depends=[matrixStats]; };
   matrixcalc = derive2 { name="matrixcalc"; version="1.0-3"; sha256="1c4w9dhi5w98qj1wwh9bbpnfk39rhiwjbanalr8bi5nmxkpcmrhp"; depends=[]; };
   matrixpls = derive2 { name="matrixpls"; version="1.0.5"; sha256="04sshb88rq2mp3y4rrs6nkzr4kc380vx380r911c7j975l55a183"; depends=[assertive lavaan MASS matrixcalc psych]; };
@@ -8331,6 +8701,7 @@ in with self; {
   maxTPR = derive2 { name="maxTPR"; version="0.1.0"; sha256="13x5rz0mfha5pzahkk4x67ncz9v77sa690cyl6wigwsldsrvzr3h"; depends=[aucm Rsolnp]; };
   maxadjAUC = derive2 { name="maxadjAUC"; version="0.1.0"; sha256="04zdaqmavhhrj63s2k5pqncvlzbfnxan7r0fagfka9dypwwcl5qm"; depends=[aucm Hmisc Rsolnp survival]; };
   maxent = derive2 { name="maxent"; version="1.3.3.1"; sha256="1skc7d0p6kg0gi1bpgaqn2dmxjzbvcphx5x3idpscxfbplm5v96p"; depends=[Rcpp SparseM tm]; };
+  maximin = derive2 { name="maximin"; version="1.0-1"; sha256="1w3b24p6r974jgd7i93wisb25n7hjk0va8bb5n0xxfdrv3z0k591"; depends=[plgp]; };
   maxlike = derive2 { name="maxlike"; version="0.1-7"; sha256="0gi33hcjj456sjw7l3q4n46k4cb6m3ml3ycd93pnajxacl24swbb"; depends=[raster]; };
   maxmatching = derive2 { name="maxmatching"; version="0.1.0"; sha256="1xbwrhmr8gzvlcprib7nzvqrcd355bhx7wkqxrvfk4g7dvskf9ka"; depends=[igraph]; };
   maxnet = derive2 { name="maxnet"; version="0.1.2"; sha256="1rfcylbv068pz4jgry5ijszwf5fibz566s5iv0ar8dhv0fhjr86z"; depends=[glmnet]; };
@@ -8338,23 +8709,25 @@ in with self; {
   mazeGen = derive2 { name="mazeGen"; version="0.1.3"; sha256="192xygg3l4rpqp49sgd5hpp4h3f8wjhyldn0l8abxhsks7jd2kfb"; depends=[igraph]; };
   mazealls = derive2 { name="mazealls"; version="0.2.0"; sha256="14j6syw1zkgs4cnmxzqpm6klmgvck2gg97wkzmy9al6n0biy8gmb"; depends=[TurtleGraphics]; };
   mazeinda = derive2 { name="mazeinda"; version="0.0.1"; sha256="0ns4ib73y4fghf7p1wg0a05js4mqr66dpp49p1h039pqrb0f1vwd"; depends=[foreach]; };
-  mbbefd = derive2 { name="mbbefd"; version="0.8.8.2"; sha256="1168r9gkz3z1qzh3pjh8s0wlpwlrk2rr1p91ldch9c001ym9y6mz"; depends=[actuar alabama fitdistrplus gsl MASS Rcpp]; };
+  mbbefd = derive2 { name="mbbefd"; version="0.8.8.3"; sha256="02iijakxl96m6n1rv0xsacsyjj5b093sl07lmp62hwyv9hf3jh4k"; depends=[actuar alabama fitdistrplus gsl MASS Rcpp]; };
   mbclusterwise = derive2 { name="mbclusterwise"; version="1.0"; sha256="1ilqaxcxf1k3ck910s0xqwnp88w8ag5rn1dpvaa1i7jlcldsbnhp"; depends=[ade4 doParallel foreach kknn]; };
   mbest = derive2 { name="mbest"; version="0.6"; sha256="1x0f7y5hj6a35wq1xn6g7jyjn9c4zryahwlf07qrypgrcnj2m8vx"; depends=[abind bigmemory foreach lme4 logging nlme]; };
   mbgraphic = derive2 { name="mbgraphic"; version="1.0.0"; sha256="0b4xr2ycx8v56fp40lnxv69qfp0yzai2hdwk3kw4wsmir91d2a91"; depends=[diptest dplyr extracat GGally ggplot2 gridExtra hexbin magrittr mgcv Rcpp scagnostics scales seriation shiny]; };
-  mbir = derive2 { name="mbir"; version="1.3.1"; sha256="0wprbgjf02ybjn3yakyvz0niv2szarlmmcizdyjsaksh21byd46x"; depends=[]; };
+  mbir = derive2 { name="mbir"; version="1.3.4"; sha256="151pixrqg6wj8605vf8cscmh2a1f171k8a4fzkqv4dl8f1ivwphp"; depends=[effsize psych]; };
   mblm = derive2 { name="mblm"; version="0.12"; sha256="17h65bapvz89g5in3gkxq541bxgpj9pciz6i5hzhqn0bdbsb3k6r"; depends=[]; };
   mbmdr = derive2 { name="mbmdr"; version="2.6"; sha256="0ss5w66hcgd8v8j9bbbp12a720sblhr2hy9kidqfr8hgjaqlch86"; depends=[logistf]; };
-  mboost = derive2 { name="mboost"; version="2.9-0"; sha256="0hfw69h3j4hwwrdinmazl4abhij2drki5jp9i9qz30gyy16wf0f2"; depends=[lattice Matrix nnls partykit quadprog stabs survival]; };
+  mboost = derive2 { name="mboost"; version="2.9-1"; sha256="02ia3y0fxfjl02fb1nnl93j640fyl18jm15cgxyybhf27w4jdvb7"; depends=[lattice Matrix nnls partykit quadprog stabs survival]; };
   mbrglm = derive2 { name="mbrglm"; version="0.0.1"; sha256="0yxq1xk8qy5hpiqqldyrs78lp4ggdp5lj2lmh8rqq1xvsfr6nrh4"; depends=[enrichwith nleqslv]; };
   mc2d = derive2 { name="mc2d"; version="0.1-18"; sha256="1ljw8ms661bsdqbfpjvvrif9n0c2i6lzxyqj4rxhxsp3dj18w3g3"; depends=[mvtnorm]; };
   mcGlobaloptim = derive2 { name="mcGlobaloptim"; version="0.1"; sha256="1p8841y9a4yq51prv6iirgw9ln8jznx8nk547sc5xlznksjy1g9n"; depends=[randtoolbox snow]; };
   mcMST = derive2 { name="mcMST"; version="1.0.1"; sha256="18ka76g9pgpycaw0hl8vxpabd8584q1l5d3xmrzy1zwincsg7vgs"; depends=[BBmisc checkmate ecr ggplot2 gtools lhs parallelMap reshape2 vegan]; };
   mcPAFit = derive2 { name="mcPAFit"; version="0.1.4"; sha256="1h5kiry8bvdrgyqf7cqsag0b7rscwc7phayzf6h4css1667bvm0g"; depends=[PAFit RColorBrewer Rcpp]; };
-  mcbiopi = derive2 { name="mcbiopi"; version="1.1.2"; sha256="12h4bv3hx1m6bsqdxj5n3b5gh98ms508am8pigz7ckmv0xkyhx85"; depends=[]; };
+  mcbiopi = derive2 { name="mcbiopi"; version="1.1.6"; sha256="1caw2sy15hw2zw0bdynwnsa7hn4rly34hlxp06nwm5lssz8l2597"; depends=[]; };
   mcc = derive2 { name="mcc"; version="1.0"; sha256="0p661a870bvh3xhcahqqq85azn9rjl3vacjy96jsdn86irj4s0vi"; depends=[]; };
-  mcca = derive2 { name="mcca"; version="0.3.0"; sha256="0fmlqk4q2vy7gzxhvb9249f1644jlvy755cpda8kvwp9qk55bp4p"; depends=[caret e1071 MASS nnet pROC rpart]; };
+  mcca = derive2 { name="mcca"; version="0.4.0"; sha256="07qqd1v70322s8z20zmhni5kfvy9izl5k2z62gdwkk29d76rg8s1"; depends=[caret e1071 MASS nnet pROC rpart]; };
+  mccf1 = derive2 { name="mccf1"; version="1.0"; sha256="1d8dw3kb2p3n3kgpihbxmwvg4blvaiss4s09452xz0d1gkjk4y01"; depends=[ggplot2 ROCR]; };
   mcclust = derive2 { name="mcclust"; version="1.0"; sha256="00qprmsjwbn2d0jl7p9mz8pv7k8ld3mzk862pr1grigk0lqwhx06"; depends=[lpSolve]; };
+  mccmeiv = derive2 { name="mccmeiv"; version="1.1"; sha256="0k9hbdxzj2nhwckxhm4w69n93xin56c1s3fw93pp5mp82m586y5c"; depends=[numDeriv survival]; };
   mccr = derive2 { name="mccr"; version="0.4.4"; sha256="1scqds1yx317qmjappy2h1m564dcmsqqfpdm8pm3plalag16xrhj"; depends=[]; };
   mcemGLM = derive2 { name="mcemGLM"; version="1.1"; sha256="07ky3bvcns24qia9pyvf5lp7764h8gn2g8zr304iz4x9bq6jvsi0"; depends=[Rcpp RcppArmadillo trust]; };
   mcen = derive2 { name="mcen"; version="1.0"; sha256="0dgic137n3qvxljj3f7j3kq3x2rkblxzg55hjbknspwp0i7i4lx8"; depends=[faraway flexclust glmnet Matrix]; };
@@ -8364,9 +8737,9 @@ in with self; {
   mcheatmaps = derive2 { name="mcheatmaps"; version="1.0.0"; sha256="1gglm32xpmim38m7fziczgqfbpcq2899lxardsrzg6j1vhmf765y"; depends=[gridBase]; };
   mclcar = derive2 { name="mclcar"; version="0.1-9"; sha256="0bwnivmajsrvmwskhk44qhz4nnc0irxq83g0kzbj4wshhivnwryp"; depends=[fields maxLik nleqslv rsm spam spdep]; };
   mcll = derive2 { name="mcll"; version="1.2"; sha256="0i9zqbh0l9a9mv4558gbdq9mh52chanykyfwmiymmxygxhp809sz"; depends=[locfit statmod]; };
-  mclogit = derive2 { name="mclogit"; version="0.6"; sha256="13n3xbdjbpj0ddq9jv2ssd6llrif38ala6c4schih0328cklgpcj"; depends=[Matrix memisc]; };
+  mclogit = derive2 { name="mclogit"; version="0.6.1"; sha256="1flq3g5jbp8nnx066wz35bg8wzlnnp9jp731w87vba483amakcds"; depends=[Matrix memisc]; };
   mclust = derive2 { name="mclust"; version="5.4.1"; sha256="1vcl4nl8by2vj2k9k84imy5m850khkgd8q02a8ica1h8vz9ijgn4"; depends=[]; };
-  mclustcomp = derive2 { name="mclustcomp"; version="0.3.0"; sha256="02j87p2z9z3b8kxnvnm1syjpv6axcs09fs3mnrl1n2q6jyc4gwsr"; depends=[Rcpp RcppArmadillo Rdpack]; };
+  mclustcomp = derive2 { name="mclustcomp"; version="0.3.1"; sha256="0jdfdmgd46w7b38nbpd0lj9vqzi2nnf8fv0crj08lfin5ng7jvaa"; depends=[Rcpp RcppArmadillo Rdpack]; };
   mcmc = derive2 { name="mcmc"; version="0.9-5"; sha256="1i3rahph8pbhi5dsyjnkazqklg4lhh3azlyvx4kvabx50q0awxn6"; depends=[]; };
   mcmcplots = derive2 { name="mcmcplots"; version="0.4.3"; sha256="0187z79gmvcrwqybxh3ckhcrqi0nqhvcvlczgxfkpq95y5czprdq"; depends=[coda colorspace denstrip sfsmisc]; };
   mcmcr = derive2 { name="mcmcr"; version="0.0.1"; sha256="0g64df8v6snbcmk0kynfppq1mqaz9z8apfsm1zn3ch5q2afg0kqy"; depends=[abind checkr coda tibble]; };
@@ -8381,29 +8754,31 @@ in with self; {
   md = derive2 { name="md"; version="1.0.4"; sha256="13z8f3p84kivk6j58fb1qpzrmml41mq9pgv9nv2gvxrhyhanzi46"; depends=[]; };
   md_log = derive2 { name="md.log"; version="0.1.1"; sha256="0ix5nz38xzlhrga40hfhlfss938mrfbni2wysvz2qbpm59qxrhg0"; depends=[futile_logger]; };
   mda = derive2 { name="mda"; version="0.4-10"; sha256="19g6kn6g0shidrjfffklbmzc5w7mcimrxhagx4nmpslg59ibqdkh"; depends=[class]; };
-  mdatools = derive2 { name="mdatools"; version="0.8.2"; sha256="11xlfgcn8gb19alfjp268mlid9g2rl69s1nlm5plwyy5h8x0hvcj"; depends=[]; };
+  mdatools = derive2 { name="mdatools"; version="0.9.1"; sha256="14q4565l7xghwrizc7qn2c6x1wq337h68gww3gxgc9jxs74axzz2"; depends=[]; };
   mded = derive2 { name="mded"; version="0.1-2"; sha256="1j8fcz5yc70p9qd9l010xj1b625scdps8z1pqh75b45p2hiqbhlc"; depends=[]; };
   mdendro = derive2 { name="mdendro"; version="1.0.0"; sha256="0pxw4zkv38syajcsbcp5f5wn8bw0ah4ay950iyhql044hlmav99j"; depends=[rJava]; };
   mdftracks = derive2 { name="mdftracks"; version="0.2.0"; sha256="0l8dc6ljrhbm8jwadaa3xkf6nx90vyiig15p7rryswczz9hw5ga6"; depends=[hellno]; };
-  mdmb = derive2 { name="mdmb"; version="0.7-19"; sha256="0clygi60wllc04spbm4982qpnsabjapmbjn5k0k9yl1xbd6960g1"; depends=[CDM coda MASS miceadds Rcpp RcppArmadillo sirt TAM]; };
+  mdhglm = derive2 { name="mdhglm"; version="1.8"; sha256="1myky8d2ilwdliqrzd2i5qvja82iz7w6qbigl7h4znpk8pdgrjb3"; depends=[boot Matrix mvtnorm]; };
+  mdir_logrank = derive2 { name="mdir.logrank"; version="0.0.4"; sha256="0bhsr005dq9v85sjm2g9xlpksxwzsmsk14g0q5v3hkjvm5wk6xmv"; depends=[MASS]; };
+  mdmb = derive2 { name="mdmb"; version="0.11-7"; sha256="15czj7vfghaipppv41ma6ysq1zcfx9v5v33ivvlrzg7cv0dqf6jp"; depends=[CDM coda MASS miceadds Rcpp RcppArmadillo sirt TAM]; };
   mdpeer = derive2 { name="mdpeer"; version="1.0.1"; sha256="1vsqhah8h47s8k687fwa352549mdz16mwk1g7rcmhx75c2k85w2q"; depends=[boot ggplot2 glmnet magic nlme nloptr psych reshape2 rootSolve]; };
-  mds = derive2 { name="mds"; version="0.1.0"; sha256="16c40m5fmj02is4vw9w284dn9pimlqp905p5ka0jw91krawasd2x"; depends=[lubridate parsedate]; };
-  mdsOpt = derive2 { name="mdsOpt"; version="0.3-1"; sha256="0fyzmbaqnj42nhl32cj1kycrqkfx2qvb5vpi0qj98fi6iwsa4psq"; depends=[animation clusterSim plotrix smacof smds spdep symbolicDA]; };
+  mds = derive2 { name="mds"; version="0.2.0"; sha256="1z98lz6nfh4x8zg906glj3jfq005hh8h0gzmzmdf7n6fx613p4x2"; depends=[lubridate parsedate]; };
+  mdsOpt = derive2 { name="mdsOpt"; version="0.3-2"; sha256="1cdsg4adxy3x1ml68i47v0bgyyrsha2wghc504pski1df1nxz2kg"; depends=[animation clusterSim plotrix smacof smds spdep symbolicDA]; };
   mdscore = derive2 { name="mdscore"; version="0.1-3"; sha256="10cl5r6kd9chdik5v0q91x40xpw2cjvvyi220z4bvngpb0989x8j"; depends=[MASS]; };
   mdsdt = derive2 { name="mdsdt"; version="1.2"; sha256="0nbzc54jac4wmfyrs821ycxh749cb1zfxcws0nbpk35rydqkc627"; depends=[ellipse mnormt polycor]; };
   mdsr = derive2 { name="mdsr"; version="0.1.6"; sha256="1z0sjrvnvm1bgifapmaay57lr5dgj84xzppwn579g8kammaav89x"; depends=[babynames DBI dbplyr downloader dplyr ggplot2 mosaic RMySQL]; };
-  mdsstat = derive2 { name="mdsstat"; version="0.1.0"; sha256="0k7sddnydxy39idk8z1j2632xyikpvdjdcm9xk72k0yj0cw6mr9r"; depends=[lubridate mds]; };
+  mdsstat = derive2 { name="mdsstat"; version="0.2.0"; sha256="12gr54lpxzs682mln21899gb3ma202a20j87p030p99fp71vbw42"; depends=[lubridate mds]; };
   mdw = derive2 { name="mdw"; version="2017.12-03"; sha256="054vssnypbik0yf6smicggnkrqf6kx8k21nbf5rminsh00sx39k1"; depends=[]; };
-  meaRtools = derive2 { name="meaRtools"; version="1.0.3"; sha256="03b3267h61kc9xgyl3j2n6i6rmm31rhzdlqa15qifsld23z72rs0"; depends=[emdist ggplot2 gridExtra gtools lattice plyr Rcpp reshape2]; };
+  meaRtools = derive2 { name="meaRtools"; version="1.0.4"; sha256="1nxyvdq4670696mhg0svxxlvk9hnr8szai8b18pw6754kmw1bjvn"; depends=[emdist ggplot2 gridExtra gtools lattice plyr Rcpp reshape2]; };
   meanShiftR = derive2 { name="meanShiftR"; version="0.52"; sha256="0mignhiz6vjpjbxg4dkc4g5mnf5mr7ifdpj7ickhspallj6l8508"; depends=[]; };
   meanr = derive2 { name="meanr"; version="0.1-1"; sha256="080x21jnbsl6qlrgv12p9qd332ciph3lh18fgs9jagfyygf4f9hg"; depends=[]; };
   measuRing = derive2 { name="measuRing"; version="0.5"; sha256="0yblqkv5444y75jkb6d0zs728i6vybm294h7b5622pwfjqlfhnh2"; depends=[dplR pastecs png tiff]; };
   measurements = derive2 { name="measurements"; version="1.2.0"; sha256="1k47xmydgd9lhc6phr40zphnibiq817f5nf8619ibla2pridjn1l"; depends=[]; };
-  measures = derive2 { name="measures"; version="0.1"; sha256="1sksgp7csmwx3z981fhi2pf75kkxhfjy2zkdw8ds5iz95hd236ih"; depends=[]; };
+  measures = derive2 { name="measures"; version="0.2"; sha256="1pp6nz30fbsqsvznim9j4vvz3z57sq5r234807flxfy0w7knydbd"; depends=[]; };
   meboot = derive2 { name="meboot"; version="1.4-7"; sha256="1i0h71aj49hyj889447s611gz668ys7xlr1i82b5nvaf6chfbfin"; depends=[dynlm nlme]; };
   mederrRank = derive2 { name="mederrRank"; version="0.0.8"; sha256="1fvvik3bhjm6c0mhi2ma915986k2nj3lr2839k5hfrr7dg3lw3f4"; depends=[BB numDeriv]; };
   medfate = derive2 { name="medfate"; version="0.2.2"; sha256="1vw9j04063sjwyfdkk94xsgz5zps7vmqha6dbsvi8ncb951cfijp"; depends=[meteoland Rcpp sp spdep]; };
-  medflex = derive2 { name="medflex"; version="0.6-4"; sha256="0nd9izvmmpdw87y5f0hrz2fml51x53zvvn0irdc1ass3cj1b7bxc"; depends=[boot car Matrix multcomp sandwich]; };
+  medflex = derive2 { name="medflex"; version="0.6-6"; sha256="04cjqhyihxf1imbl9y9s58qpy6lmxsh2gwy4bras03hx52slzl5r"; depends=[boot car Matrix multcomp sandwich]; };
   mediation = derive2 { name="mediation"; version="4.4.6"; sha256="0prhpy9y26s388p9gv5sv4h5airixwy6ffjphhxmyp9h07088xxi"; depends=[Hmisc lme4 lpSolve MASS Matrix mvtnorm sandwich]; };
   medicalrisk = derive2 { name="medicalrisk"; version="1.2"; sha256="1zdxv3rj7768kbyxfvr9n0hp4z7y0sf3r7ssqv731hjjp656l6xp"; depends=[hash plyr reshape2]; };
   medicare = derive2 { name="medicare"; version="0.2.1"; sha256="00a1gml2khzisdavnaip6ap4bw45b17nbl9cqb1mqrm4y0p9gm16"; depends=[]; };
@@ -8417,34 +8792,38 @@ in with self; {
   melviewr = derive2 { name="melviewr"; version="0.0.1"; sha256="19syc3d6zc0hmcjjdj7ibrdqxcdlh95ny970f3ska453qh1898b2"; depends=[cairoDevice gtools gWidgets gWidgetsRGtk2 jsonlite RColorBrewer RGtk2 RNifti]; };
   mem = derive2 { name="mem"; version="2.13"; sha256="1k8nda479k7w9jll2wxiasx06nz39vdcz8mssfj33amb6bk874kp"; depends=[boot dplyr EnvStats ggplot2 mclust RColorBrewer RcppRoll reshape2 sm stringr tidyr]; };
   memapp = derive2 { name="memapp"; version="2.10"; sha256="0kkim1mrajpc7b20snsrmwcki2mc2winha4lq4ybb22s16isw4p0"; depends=[dplyr DT foreign formattable ggplot2 haven magrittr mem openxlsx plotly RColorBrewer readxl RODBC shiny shinyBS shinydashboard shinyjs shinythemes stringi stringr tidyr]; };
-  meme = derive2 { name="meme"; version="0.2.0"; sha256="17zpnspc90nlga3iyl4ahasr70mnrhzja4pz7zhmjddhzjs8x3sz"; depends=[ggplot2 magick showtext sysfonts]; };
+  meme = derive2 { name="meme"; version="0.2.1"; sha256="0ddrm82190f8yahnann1l5fwn55msfhhcizbr0vkb098x6m2l251"; depends=[ggplot2 gridGraphics magick showtext sysfonts]; };
   memery = derive2 { name="memery"; version="0.5.0"; sha256="0bin1rmna5z0y568jbnga7pcrkgjy04av3bzcyf3fpvqqmn36r8f"; depends=[Cairo colourpicker cowplot ggplot2 jpeg magrittr png purrr shiny shinyBS shinycssloaders showtext sysfonts]; };
   memgene = derive2 { name="memgene"; version="1.0"; sha256="00b1mi2hvzzps542mh2p96s27kjqkpcic7djklfcwnfn1m4bz0i5"; depends=[ade4 gdistance raster vegan]; };
-  memisc = derive2 { name="memisc"; version="0.99.14.9"; sha256="1gh6shm9nwfjwfi5f4cz2jsldfdnkj6f73279l86wki5gdf36zri"; depends=[lattice MASS repr]; };
+  memisc = derive2 { name="memisc"; version="0.99.14.12"; sha256="0n8gl031n33r4iymlp3mnfilm9qwahxssrk4wlxfyp08w4mjlhjl"; depends=[lattice MASS repr]; };
   memo = derive2 { name="memo"; version="1.0.1"; sha256="14nvqi1qsin45ksd0wp9cigjk1gghr4jijdqkaqh177dwa244r9j"; depends=[digest]; };
   memoise = derive2 { name="memoise"; version="1.1.0"; sha256="034qfc2xlh30x1q2vya239w34a3ir3y2fwnx2agbgbi6592zjxmj"; depends=[digest]; };
+  memor = derive2 { name="memor"; version="0.1.1"; sha256="1l54hrbrccl6imfjj6lmb0rsfl5f5f87vaap43i4j0nbbm0y3jsb"; depends=[knitr rmarkdown yaml]; };
   memuse = derive2 { name="memuse"; version="4.0-0"; sha256="1g63nssxrgqgzw8qjz8202qpwhps8fbck6pn77j2wsc82dm73y7v"; depends=[]; };
-  merDeriv = derive2 { name="merDeriv"; version="0.1-4"; sha256="1gkxc2bf4fx3vbf1nq1g713hhhx7031wchxmgr2ydwfrighwf8qg"; depends=[lme4 Matrix nonnest2 sandwich]; };
+  merDeriv = derive2 { name="merDeriv"; version="0.1-5"; sha256="1mnrjppn4gw5rikmdxpdx8xd31wj9f3mvjkfznvhig869wzr6p4z"; depends=[lme4 Matrix nonnest2 sandwich]; };
   merTools = derive2 { name="merTools"; version="0.4.1"; sha256="1224cmkxbkd3r10z73ww0s1nyzg00x55fv91pn1gp8p7cmpp0ni2"; depends=[abind arm blme broom dplyr DT foreach ggplot2 lme4 mvtnorm shiny]; };
+  merlin = derive2 { name="merlin"; version="0.0.1"; sha256="14k8kz8icj3wgd3li83v0wfl61pdc97r7qjcsmmc5srp36kbw1i9"; depends=[MASS randtoolbox statmod survival]; };
   merror = derive2 { name="merror"; version="2.0.2"; sha256="13d9r5r83zai8jnzxaz1ak40876aw20zbpr244gs55rvj5j7f87q"; depends=[]; };
   messaging = derive2 { name="messaging"; version="0.1.0"; sha256="0q19cqp1zgh0yhk1ql0jqf414bhx6jwhkairq6wx2cmkli2g7k1y"; depends=[dplyr glue magrittr rlang stringr]; };
-  metRology = derive2 { name="metRology"; version="0.9-26-2"; sha256="1i9lxgphn8nmkcp2zgjs6ylbccmfgv9lfch00xmx1xfb538jz82q"; depends=[MASS numDeriv robustbase]; };
+  metRology = derive2 { name="metRology"; version="0.9-28-1"; sha256="1syjwblyd18myxrs0hx4m91fgb6zs3r4g7w701j2f2pw6j9mvz0y"; depends=[MASS numDeriv robustbase]; };
   metScanR = derive2 { name="metScanR"; version="1.2.0"; sha256="1x32f23w5f3s7sc5gbbqzq9s83clarskj9vpnfnwryrx87dg1jjc"; depends=[geosphere leaflet plyr RColorBrewer RCurl]; };
   meta = derive2 { name="meta"; version="4.9-2"; sha256="1hzf6jphgz61d3rq8dqbyw3iddyv2x5a3xik3b606p8si19b66sh"; depends=[]; };
-  meta4diag = derive2 { name="meta4diag"; version="2.0.7"; sha256="024rxnqzw9xydy0mm1w38s739qgkzjsifq23bwpvkwj0x0jnwry0"; depends=[caTools shiny shinyBS sp]; };
+  meta4diag = derive2 { name="meta4diag"; version="2.0.8"; sha256="1ila8x9r1rdmlwfpzfx1zj5yx1m4yrbhyb74db4wqbh1dswn7zsm"; depends=[caTools shiny shinyBS sp]; };
   metaBLUE = derive2 { name="metaBLUE"; version="1.0.0"; sha256="0ppn4bvr10z32pghmv4wjv86k6n5y5bkfxc6h5mvb556v6jnl6d8"; depends=[Matrix]; };
   metaBMA = derive2 { name="metaBMA"; version="0.3.9"; sha256="14c3q4aw89r3apzm0ils886xsc6agbn8d2wgp47dc2ddwf5n8p58"; depends=[coda LaplacesDemon logspline mvtnorm runjags]; };
+  metaDigitise = derive2 { name="metaDigitise"; version="1.0.0"; sha256="04hycv9dpy39l8fhql69mcn5w97f7sjxrhiz5vbpbawvfbkl0f0l"; depends=[magick purrr]; };
   metaLik = derive2 { name="metaLik"; version="0.43.0"; sha256="1li40pgd9z00nrph9njwn6wysb1i9dkpqzcp6fzds6asvcxlqqfl"; depends=[]; };
   metaMA = derive2 { name="metaMA"; version="3.1.2"; sha256="1mjyz06q1kc8lhfixpym4ndpnisi1r849fj3da6riwfd6ab1v181"; depends=[limma SMVar]; };
   metaMix = derive2 { name="metaMix"; version="0.2"; sha256="0xlsdgincxwjzyr4i8qfmfw2wvgf41qbmyhf2rxcbarf7rmwhmqf"; depends=[data_table ggplot2 gtools Matrix Rmpi]; };
   metaRNASeq = derive2 { name="metaRNASeq"; version="1.0.2"; sha256="1xz7df7ypq4326yg429pgxd6aldp14c3h3qi20j5nqr5xgsdgzqa"; depends=[]; };
-  metaSEM = derive2 { name="metaSEM"; version="1.1.0"; sha256="1jhlv93a53pnksllrvqiqv5229cvxfa2mk768yncdfv67d04vwj9"; depends=[ellipse lavaan MASS Matrix mvtnorm numDeriv OpenMx]; };
-  metaboGSE = derive2 { name="metaboGSE"; version="1.0.2"; sha256="1nfcjplry2ba98yi3flk6zcvlys57gri3582mylh543xkcvlrifz"; depends=[AnnotationDbi ape Matrix sybil topGO]; };
+  metaSEM = derive2 { name="metaSEM"; version="1.2.0"; sha256="0b10as2bb5f31r59548v1j8saxd16icrsg915j2yv3nxzyi5iq7f"; depends=[ellipse lavaan MASS Matrix mvtnorm numDeriv OpenMx]; };
+  metaboGSE = derive2 { name="metaboGSE"; version="1.1.0"; sha256="0idx3vsn2jdxyii6y3h5is7rh084brng1dvalqjjqbbhwjcg51vc"; depends=[AnnotationDbi ape Matrix sybil topGO]; };
   metabolomics = derive2 { name="metabolomics"; version="0.1.4"; sha256="0m5d2784mkpkkg396y3vpvf38vmba5kvxarilq3zf818vjs4pnax"; depends=[crmn gplots limma]; };
   metacart = derive2 { name="metacart"; version="1.0-0"; sha256="13dp9yz6yjd2jc7lf3w3ac3vk69ry7zygf6xnvzrcwsdmxd0258n"; depends=[ggplot2 gridExtra rpart rpart_plot]; };
-  metacoder = derive2 { name="metacoder"; version="0.2.1"; sha256="1l054p870679ni57l234bvma88s7cpr2ddryb87dxfh5510y86bb"; depends=[ape biomformat cowplot crayon dplyr GA ggfittext ggplot2 ggrepel igraph lazyeval magrittr phylotate RColorBrewer Rcpp RCurl readr reshape reshape2 rlang scales seqinr stringr taxa taxize traits vegan zoo]; };
-  metacom = derive2 { name="metacom"; version="1.5.0"; sha256="1zsnzzxv3vsj1swybhh6g8ddffp4xrn081y192xa6a78ii8q4kav"; depends=[vegan]; };
+  metacoder = derive2 { name="metacoder"; version="0.3.0"; sha256="10gg7kqp512xdfhkpjk48xcfiwc04967lxkhxhfblm6y5fmgwjba"; depends=[ape biomformat cowplot crayon dplyr GA ggfittext ggplot2 ggrepel igraph lazyeval magrittr phyloseq phylotate RColorBrewer Rcpp RCurl readr reshape reshape2 rlang scales seqinr stringr svglite taxa taxize traits vegan zoo]; };
+  metacom = derive2 { name="metacom"; version="1.5.1"; sha256="18n3mbmjna3db44gscsdgv1j8f11jhikiw7yg3vbw2a9v5w3ypkv"; depends=[vegan]; };
   metacor = derive2 { name="metacor"; version="1.0-2"; sha256="04k3ph0yg3jp8x4g6l1h4m0qwl51mx0626xmm0fzr1pv4b4a1ypw"; depends=[gsl rmeta]; };
+  metadynminer = derive2 { name="metadynminer"; version="0.1.2"; sha256="1py7m8l4fjswap0h41svgg8r1vhsvzxc2g3631php93k1fnpz0v7"; depends=[Rcpp]; };
   metafolio = derive2 { name="metafolio"; version="0.1.0"; sha256="18s78lljwnn3j0l3mqc0svszcb3c8yzyzlpnimndbiq9yxagxnnf"; depends=[colorspace MASS plyr Rcpp RcppArmadillo]; };
   metafor = derive2 { name="metafor"; version="2.0-0"; sha256="0h14wd7hr1d40p5r70f2jgdgj24jwpnr4nrj6yp5qjr466v81z96"; depends=[Matrix nlme]; };
   metaforest = derive2 { name="metaforest"; version="0.1.2"; sha256="0ppv9vdwxggccn2202snl13vid3v2kx5ps81cadghg2kcd8axfbs"; depends=[ggplot2 gtable metafor mmpf ranger]; };
@@ -8453,10 +8832,11 @@ in with self; {
   metagen = derive2 { name="metagen"; version="1.0"; sha256="0jvbm22976aqvmfnjzs51n2w099yj5hpx6hd0pgvbia80jk7b9vk"; depends=[BatchExperiments BatchJobs BBmisc ggplot2 lhs MASS metafor ParamHelpers plyr]; };
   metaheur = derive2 { name="metaheur"; version="0.2.0"; sha256="1rr5mjx3v87alj7cl9hxldvhhbpkz1fzmymmkqv0hs65pny6gbqw"; depends=[doParallel foreach ggplot2 preprocomb reshape2]; };
   metaheuristicOpt = derive2 { name="metaheuristicOpt"; version="1.0.0"; sha256="1wzy5dnmrdfdj1386snjyisrbzbq8v4qsnq57l3wvkg1pgnz1vh2"; depends=[]; };
+  metamedian = derive2 { name="metamedian"; version="0.1.0"; sha256="0xs967cy7z04ry90h8q38znd6idg960g5dq4dy5a8ff5qb34kflc"; depends=[Hmisc metafor]; };
   metamisc = derive2 { name="metamisc"; version="0.1.9"; sha256="0wjwx7ncplpchwbz0l4xmsmy0faj2wnqjxvxyi05992v3rjv4j8k"; depends=[ellipse ggplot2 lme4 metafor mvtnorm plyr]; };
-  metansue = derive2 { name="metansue"; version="2.1"; sha256="0mklpnb9m0pynz3x0fin003zz0n1v6i0fdcahny70y1yxiy5agcs"; depends=[]; };
-  metap = derive2 { name="metap"; version="0.9"; sha256="03vg0mb6q7j2z0pkxykbak0hcp6dcak7zxs1lw9hswz9kqrq5jhz"; depends=[lattice]; };
-  metaplot = derive2 { name="metaplot"; version="0.4.9"; sha256="1nbnyh03n1kkkl4v80nbbbnkrzs1a5ri210x9q4m2v87jrcikllw"; depends=[dplyr encode lattice magrittr rlang tidyr]; };
+  metansue = derive2 { name="metansue"; version="2.2"; sha256="0qawsgskvsaj0h6igb4phajs5wwjrr1j07dpn86b6r0fdc2y2xzj"; depends=[]; };
+  metap = derive2 { name="metap"; version="1.0"; sha256="18rzvqfzyk8fn54gjvy2qd21nk9w69j7ihww477ma3f3ab6i982h"; depends=[lattice Rdpack]; };
+  metaplot = derive2 { name="metaplot"; version="0.8.0"; sha256="10nb3xiy2dqxk51dpyg435r99hmj23agi2kly7y7vy2404142bq6"; depends=[dplyr encode ggplot2 gridExtra gtable lattice magrittr rlang scales tidyr]; };
   metaplotr = derive2 { name="metaplotr"; version="0.0.3"; sha256="01iala6cxsxv30fnlh80md5mpy3ksd2piw90zcls8f68g1c6v1jy"; depends=[ggplot2 gridExtra]; };
   metaplus = derive2 { name="metaplus"; version="0.7-11"; sha256="05pkgw0zlq3q9mvdw2yxz9mxzqwq3c8q6cwvh87cigw1pf8y9an7"; depends=[bbmle boot fastGHQuad lme4 MASS metafor numDeriv]; };
   metasens = derive2 { name="metasens"; version="0.3-2"; sha256="1wxp6gzq3wmas8hm8vqxclawxkc4p8dw2apzmg0nciqvas6dzic8"; depends=[meta]; };
@@ -8467,24 +8847,24 @@ in with self; {
   meteo = derive2 { name="meteo"; version="0.1-5"; sha256="0n37plka9vsxwd03lca3h6m8dcz3f1bi46jn3bz7vyilnkq9hcdk"; depends=[gstat plyr raster rgdal snowfall sp spacetime]; };
   meteoForecast = derive2 { name="meteoForecast"; version="0.52"; sha256="1v9p2l45jzzim10pmy4y1hzc68sxawd996sri6dw7hnalfqfiyxj"; depends=[ncdf4 raster sp XML zoo]; };
   meteogRam = derive2 { name="meteogRam"; version="1.0"; sha256="167gyxjnl4dyfqs3znv8sdpkvpqdxzdqi1g730s30gycrm9snap9"; depends=[ggplot2 RadioSonde]; };
-  meteoland = derive2 { name="meteoland"; version="0.7.1"; sha256="1nsn4z3gbkcdhgyn13fjcpsyb0lb85kiyy6fhirlnw63dwr56a2l"; depends=[curl ncdf4 ncdf4_helpers qmap Rcpp rgdal sp spdep]; };
+  meteoland = derive2 { name="meteoland"; version="0.7.7"; sha256="0gsj44kigfiq92qg7aiw6ln0i421zf4vjs4w298ci0c9hd1lmphl"; depends=[httr jsonlite knitr ncdf4 ncdf4_helpers Rcpp rgdal sp spdep]; };
   metricTester = derive2 { name="metricTester"; version="1.3.4"; sha256="1z4z8km1jr0azh2zxp1sffm5picc9y6w9yn68zr1axli0l64y3a0"; depends=[ape doParallel dplyr foreach geiger MASS picante plotrix spacodiR]; };
   metricsgraphics = derive2 { name="metricsgraphics"; version="0.9.0"; sha256="1zbx82b34y0rr4w7rzvyc1nzk95w6cdkg0j1kkshbmkvplq6v9i4"; depends=[htmltools htmlwidgets magrittr]; };
-  mets = derive2 { name="mets"; version="1.2.3.1"; sha256="0v6w2gy88mds9ynmlbdx67zhl61x71i9nj2km5wvzrn5kcn1500p"; depends=[lava numDeriv Rcpp RcppArmadillo survival timereg]; };
+  mets = derive2 { name="mets"; version="1.2.4"; sha256="1xchww1y9zf2h5qfqa1j0vhzzccrh9qj4xzgr23p5svjgcqx8r1b"; depends=[lava numDeriv Rcpp RcppArmadillo survival timereg]; };
   mev = derive2 { name="mev"; version="1.11"; sha256="0iqcslnchap8zh4s3bllqqb8z0klpzg2pn8ays1xk66lj5ywl390"; depends=[boot evd gmm ismev nleqslv nloptr numDeriv Rcpp RcppArmadillo revdbayes rootSolve]; };
   mewAvg = derive2 { name="mewAvg"; version="0.3.0"; sha256="16gc78ccjffp9qgc7rs622jql54ij83ygvph3hz19wpk22m96glm"; depends=[]; };
   mexhaz = derive2 { name="mexhaz"; version="1.5"; sha256="0my53dg321xfbbkxawxcggnh5gw9qkliji5gsdb8m1fi37djd67w"; depends=[MASS numDeriv statmod survival]; };
-  mfGARCH = derive2 { name="mfGARCH"; version="0.1.5"; sha256="0p7cnizhf1cgkzhja74p257k31hb6b7y4qnn3k9yawscdmg3zy50"; depends=[numDeriv Rcpp zoo]; };
+  mfGARCH = derive2 { name="mfGARCH"; version="0.1.7"; sha256="086596dj6xz7by6rwddvyl7ap341q5hmpc6pslcjn0yvbc7j0wkh"; depends=[numDeriv Rcpp zoo]; };
   mfe = derive2 { name="mfe"; version="0.1.1"; sha256="0z9ddkck1z14b9cwvaam0xh869lh2fsjm1d3i8giyrcry0vvpp61"; depends=[cluster e1071 infotheo MASS rpart rrcov]; };
   mfp = derive2 { name="mfp"; version="1.5.2"; sha256="1i90ggbyk2p1ym7xvbf4rhyl51kmfp6ibc1dnmphgw15wy56y97a"; depends=[survival]; };
   mfx = derive2 { name="mfx"; version="1.1"; sha256="1zhpk38k7vdq0pyqi1s858ns19qycs3nznpa00yv8sz9n798wnn5"; depends=[betareg lmtest MASS sandwich]; };
   mgarchBEKK = derive2 { name="mgarchBEKK"; version="0.0.2"; sha256="1k4c34srnckbh5kchzmm44l91ma9sw0gi4y225igs3cl79212q9c"; depends=[mvtnorm tseries]; };
   mgc = derive2 { name="mgc"; version="1.0.1"; sha256="0bdj890v2rinsddny8kwa48cgqh9qlzfd7k5s4i9mg40ajr0f291"; depends=[MASS SDMTools]; };
   mgcViz = derive2 { name="mgcViz"; version="0.1.1"; sha256="1vv76cmfva1lsi921i337m44m9vykfp4rb9xidxww8dk3i9agg97"; depends=[colourpicker data_table dplyr GGally ggplot2 gridExtra KernSmooth matrixStats mgcv miniUI mvnfast plotly plyr qgam rgl rstudioapi shiny viridis]; };
-  mgcv = derive2 { name="mgcv"; version="1.8-24"; sha256="15b76m1f0hz8dbmj9shqvslihdx5b7c48vck9grj5xs1z2y45r9c"; depends=[Matrix nlme]; };
+  mgcv = derive2 { name="mgcv"; version="1.8-25"; sha256="1y2rq6v45pr2wcxihhgmingcdvcsilim2cvskrlb7k2n00qg6v2q"; depends=[Matrix nlme]; };
   mglR = derive2 { name="mglR"; version="0.1.0"; sha256="1b7nd913d4a1szgw2qnhlnjqhfxr95xag6jwjcb2wnnxd12lib7n"; depends=[biomaRt dplyr gdata ggplot2 gplots magrittr stringr]; };
   mglmn = derive2 { name="mglmn"; version="0.0.2"; sha256="1ijkmr85s4yya0hfwcyqqskbprnkcbq8sc9c889i0gy0543fgqz4"; depends=[mvabund snowfall]; };
-  mgm = derive2 { name="mgm"; version="1.2-3"; sha256="066k5z99dssp9w5iav68mka68li1r7f5x2qbp21gnc89syrsqwnw"; depends=[glmnet gtools Hmisc matrixcalc qgraph stringr]; };
+  mgm = derive2 { name="mgm"; version="1.2-4"; sha256="0fyg9dxvrl3biamqc908z1vc7pji1n4l2bwxjfdkwjb5cf6snd3f"; depends=[glmnet gtools Hmisc matrixcalc qgraph stringr]; };
   mgpd = derive2 { name="mgpd"; version="1.99"; sha256="0cxpgza9i0hjm5w1i5crzlgh740v143120zwjn95cav8pk8n2wyb"; depends=[corpcor evd fields numDeriv]; };
   mgraph = derive2 { name="mgraph"; version="1.03"; sha256="0av2c0jvqsdfb3i0s0498wcms0n2mm0z3nnl98mx2fy7wz34z8b2"; depends=[rgdal]; };
   mgsub = derive2 { name="mgsub"; version="1.5.0"; sha256="03w40vs3vfyrksnzbawyvp02kwrmn7cqhlv6xhfzfbh8jmz55wvr"; depends=[]; };
@@ -8493,6 +8873,7 @@ in with self; {
   mhsmm = derive2 { name="mhsmm"; version="0.4.16"; sha256="009dj0zkj1zry7jr9hf4cknb686z50a2l967if64xm0dvjmp7dgs"; depends=[mvtnorm]; };
   mht = derive2 { name="mht"; version="3.1.2"; sha256="01zcaf9k0qayzm8dn5dvnm5n3qgqpj8r96qhqaa5vbjcr6ci2x2r"; depends=[glmnet Matrix]; };
   mhtboot = derive2 { name="mhtboot"; version="1.3.3"; sha256="1z0p8ny9lpnrshgas7cad2lv7j0blw0n6ihiimw600n70h73jwrn"; depends=[ggplot2 reshape2]; };
+  mhurdle = derive2 { name="mhurdle"; version="1.1-8"; sha256="0nnzhcp9ghx2ifaj8lvhvv1acb3dpwi8m9n1al8zjvfg35wmxwwm"; depends=[Formula maxLik survival texreg truncreg]; };
   mi = derive2 { name="mi"; version="1.0"; sha256="1h47k5mpbvhid83277dvvj2di493bgzz9iarpyv3r30y219l7x1l"; depends=[arm Matrix]; };
   miCoPTCM = derive2 { name="miCoPTCM"; version="1.0"; sha256="1lmf6zahfp59ylhdp2cbr7y3vayhim72zazimg4qfld4r9d6kygc"; depends=[distr MASS nleqslv survival]; };
   miLineage = derive2 { name="miLineage"; version="2.1"; sha256="0660vk44ywmj0q2cw7pa2z1r039ncw693dnz7zlgc0ipwak3b0ry"; depends=[data_table geepack MASS]; };
@@ -8504,24 +8885,24 @@ in with self; {
   micEconCES = derive2 { name="micEconCES"; version="0.9-8"; sha256="06g6z8hf7y9d942w6gya0fd5aidzfjkx3280gjygdlwpv7nlpqzv"; depends=[car DEoptim micEcon minpack_lm miscTools systemfit]; };
   micEconIndex = derive2 { name="micEconIndex"; version="0.1-6"; sha256="1ihly6qpyg1pms4nkvs6khxxqwr3fwg57i8pg0yhyy1apqxyj2xl"; depends=[miscTools]; };
   micEconSNQP = derive2 { name="micEconSNQP"; version="0.6-6"; sha256="1n3pxapc90iz1w3plaqflayd0b1jqd65yw5nbbm9xz0ih132dby9"; depends=[MASS miscTools systemfit]; };
-  mice = derive2 { name="mice"; version="3.1.0"; sha256="0xpn215yfzib4hw09cwilnyg9zbvq460njavfvm84mvgwbm25byi"; depends=[broom dplyr lattice MASS mitml nnet Rcpp rlang rpart survival]; };
+  mice = derive2 { name="mice"; version="3.3.0"; sha256="1p0ipbqk5aqdi7iikw3qrjyvdi9sdhpnw1h5mwakwvv0yl0pzbyx"; depends=[broom dplyr lattice MASS mitml nnet Rcpp rlang rpart survival]; };
   miceExt = derive2 { name="miceExt"; version="1.1.0"; sha256="07xj9f5w0kh4d1yj8mx1jydvhd0vwpvvrb6h67xz5gb1ban4k6c6"; depends=[mice RANN RANN_L1]; };
   miceFast = derive2 { name="miceFast"; version="0.2.3"; sha256="0ngb2qs71x0i8ffyb1qlbz2wk6c87m1r74l547c5pc9agnc227m0"; depends=[Rcpp RcppArmadillo]; };
-  miceMNAR = derive2 { name="miceMNAR"; version="1.0.1"; sha256="1f9cikqcyj5hh8ray2bx8yhhvv378vsk5d6k7hl44c54qgna61cf"; depends=[GJRM mice mvtnorm pbivnorm sampleSelection]; };
-  miceadds = derive2 { name="miceadds"; version="2.13-63"; sha256="1a4d0bvvc2w9d6zp8pxrcgsn8jrydbkl5wwafm6zak54z6rsipj4"; depends=[CDM coda lme4 MASS mice mitools mvtnorm Rcpp RcppArmadillo sirt TAM]; };
-  micemd = derive2 { name="micemd"; version="1.2.0"; sha256="0l4qzhkxy43xwgfqp2c638fimixdrm94hgiabfds3sc1vbxma4r8"; depends=[abind digest jomo lme4 MASS Matrix mice mvmeta mvtnorm nlme]; };
+  miceMNAR = derive2 { name="miceMNAR"; version="1.0.2"; sha256="1s607icaf3c25mn8xdi3zkzmm8m7qd9a6vjdlz5j7ig2gc9f2y2d"; depends=[GJRM mice mvtnorm pbivnorm sampleSelection]; };
+  miceadds = derive2 { name="miceadds"; version="2.15-22"; sha256="0069qijlk1nvk1rgm5ki5d3914sgxszk1d9hlnpipq0qwrn99kmy"; depends=[CDM coda lme4 MASS mice mitools mvtnorm Rcpp RcppArmadillo sirt TAM]; };
+  micemd = derive2 { name="micemd"; version="1.4.0"; sha256="0annxirq2klldbx5fkfkzmf2gqy7zk1mpwmyhqr8halagmwa12k6"; depends=[abind digest jomo lme4 MASS Matrix mice mvmeta mvtnorm nlme]; };
   micompr = derive2 { name="micompr"; version="1.1.0"; sha256="0qsxs35mmqx8hpszcb1z87xczh0vh0m0plqrj22af5mjjvif76n9"; depends=[]; };
   microPop = derive2 { name="microPop"; version="1.4"; sha256="0dfqn7g445w4nydklvsq5vlkiin6kcz8kkazj7jfbm98ikdywzm8"; depends=[deSolve]; };
   microbats = derive2 { name="microbats"; version="0.1-1"; sha256="1mahvblaiwg1xk2s34wd1ic8ddc9lh6g0azik2pd97bsf0krkyw8"; depends=[]; };
-  microbenchmark = derive2 { name="microbenchmark"; version="1.4-4"; sha256="0fv2w2vsiz18imf4115nd9chhmf275w2mb49pn7pkxi6z3bamc9c"; depends=[]; };
+  microbenchmark = derive2 { name="microbenchmark"; version="1.4-6"; sha256="1sn1fxgzakm5iqbgc35g3k4yi0iqrkmwz33cvdrphrzh1lxnmi3s"; depends=[]; };
   microclass = derive2 { name="microclass"; version="1.1"; sha256="0hl2s4135k187f0vqmj9snvmnwa5k9fg8ahivfs7ciknrcxfv3nk"; depends=[microcontax microseq Rcpp RcppEigen RcppParallel]; };
   microcontax = derive2 { name="microcontax"; version="1.0"; sha256="0l5mfgda5xagjbh9bwv328k3m7kgggdm90rc8fr1ic59hvg56f3g"; depends=[microseq]; };
-  microdemic = derive2 { name="microdemic"; version="0.3.0"; sha256="1hrl458jwrgjm7ds4scmicf39ssw1gbjxqaq95lhlwi9n0prd7jn"; depends=[crul data_table jsonlite tibble]; };
+  microdemic = derive2 { name="microdemic"; version="0.4.0"; sha256="0i4pkrw02ad8ssvryndf7pxgk5wcyn4126yvl28fxk38249kvc9v"; depends=[crul data_table jsonlite tibble]; };
   micromap = derive2 { name="micromap"; version="1.9.3"; sha256="1iciwy0kcg4qa0xc4gkqcilq33ac1s184vw13cbbkv0d1b5cgkgv"; depends=[ggplot2 maptools RColorBrewer rgdal sp]; };
   micromapST = derive2 { name="micromapST"; version="1.1.1"; sha256="15ch132x3wnpf7rmy25nah7iyfxfk90p7lvavqjhrnavhjsfxbxx"; depends=[labeling RColorBrewer stringr]; };
   micropan = derive2 { name="micropan"; version="1.2"; sha256="1b3hd5c6l9njns372zhqfryibrpqmrjxmc1p5gzdwm7450cs7qky"; depends=[BH igraph microseq Rcpp]; };
-  microplot = derive2 { name="microplot"; version="1.0-39"; sha256="191rgmcq405c91dv0zk7in2r71n8d1m04w624950ykq6qhdjpmpp"; depends=[cowplot ggplot2 HH Hmisc htmltools lattice ReporteRs]; };
-  microsamplingDesign = derive2 { name="microsamplingDesign"; version="1.0.2"; sha256="1wddf09p803hi28kzn6sq86zhgldxi34rrj7c0bpzy476abnp45s"; depends=[abind deSolve devtools ggplot2 gridExtra gtools knitr MASS matrixcalc matrixStats plyr Rcpp RcppArmadillo readr reshape2 shiny stringr]; };
+  microplot = derive2 { name="microplot"; version="1.0-42"; sha256="062dd4k6ryyl44lwbc2qgdsfcs1fiv9j2n6lx9driw6vng533b6q"; depends=[cowplot flextable ggplot2 HH Hmisc htmltools lattice officer]; };
+  microsamplingDesign = derive2 { name="microsamplingDesign"; version="1.0.5"; sha256="0dybi3l1cyndn72h7dic2n8ll8xnkd837pyvmqkcivckhsl43p9w"; depends=[abind deSolve devtools ggplot2 gridExtra gtools knitr MASS matrixcalc matrixStats plyr Rcpp RcppArmadillo readr reshape2 shiny stringr]; };
   microseq = derive2 { name="microseq"; version="1.2.2"; sha256="1h828iviraqrm43lhd0s3r7rdlakc6yfc6ngrcrkacpflfcmx3c7"; depends=[Rcpp]; };
   microsynth = derive2 { name="microsynth"; version="1.0.9"; sha256="06k7lag0vlzhrq5x6h7m8q9n209hfal3dzzmpjgxb6i9xdigkr6h"; depends=[boot kernlab LowRankQP MASS nleqslv pracma survey]; };
   midas = derive2 { name="midas"; version="1.0.1"; sha256="1alqxk23651jnkg0xn4rpvk71z5rhvx3y0wjrgkw2qw95s7jjn72"; depends=[shiny xml2]; };
@@ -8533,9 +8914,9 @@ in with self; {
   migui = derive2 { name="migui"; version="1.1"; sha256="1qchjsc7ff2b6s9w6ncj9knjv6pyp90jd4jxljn2rr1ix1gc45za"; depends=[arm gWidgets2 mi]; };
   miic = derive2 { name="miic"; version="1.0.3"; sha256="088szscn9v9279w86mypxphp3avv17iijvcvlckx3h1ka75lkx27"; depends=[bnlearn igraph MASS ppcor Rcpp]; };
   milr = derive2 { name="milr"; version="0.3.0"; sha256="0z4d22fd6gd3zbi973vws9jqyh4c4m4i4ajcpxv934vxmbj0cma9"; depends=[glmnet numDeriv pipeR Rcpp RcppArmadillo RcppParallel]; };
-  mime = derive2 { name="mime"; version="0.5"; sha256="0i91m3ivaja1k33jwcvz16pfjypkci27awm8glil7sxhmwaj3izw"; depends=[]; };
+  mime = derive2 { name="mime"; version="0.6"; sha256="00f4gw4sg1kn03s67gficxgb7a7fb6pwhlvrxrml05q1mc2vcxa7"; depends=[]; };
   minPtest = derive2 { name="minPtest"; version="1.7"; sha256="088kckpbfy2yp0pk3zrixrimywrvkaib5ywa7fkr5phnzlsl80sv"; depends=[Epi scrime]; };
-  mindr = derive2 { name="mindr"; version="1.1.0"; sha256="102r7m6jiadgmkw4w7535ba2qfxknj00y4b9hhawcjqm5v67jipz"; depends=[htmlwidgets]; };
+  mindr = derive2 { name="mindr"; version="1.1.5"; sha256="02yszk13h5mm2wyx81byij152r8lj5j7r65icq3cl5skxygl43y7"; depends=[htmlwidgets]; };
   mineCitrus = derive2 { name="mineCitrus"; version="1.0.0"; sha256="031nfhrsc5rlqls3vyrk18lx0pd4ssdk96cmfr4ifaciz0rgv8h2"; depends=[ggplot2]; };
   minerva = derive2 { name="minerva"; version="1.4.7"; sha256="19snlbnk4y0lj7kfypa2g1d1s7bl3xkrxabn8p15hlwwcfb0x7vm"; depends=[]; };
   miniCRAN = derive2 { name="miniCRAN"; version="0.2.11"; sha256="1ffc367ipcxyk2a8f2y46xa01rbr5254cryf1qzzfflb3xj8n6pa"; depends=[httr igraph XML]; };
@@ -8551,9 +8932,9 @@ in with self; {
   minque = derive2 { name="minque"; version="1.1"; sha256="1hx4j38213hs8lssf9kj5s423imk7dzv60mdbzrpbp7la7jk2n57"; depends=[klaR Matrix]; };
   minval = derive2 { name="minval"; version="0.8-1"; sha256="11sr69hmqnh5g2zbfajy3wqc57759basky1w72dnrd38rq50llxs"; depends=[]; };
   minxent = derive2 { name="minxent"; version="0.01"; sha256="1a0kak4ff1mnpvc9arr3sihp4adialnxxyaacdgmwpw61wgcir7h"; depends=[]; };
-  mipfp = derive2 { name="mipfp"; version="3.2"; sha256="1mds51vkqs2jc5kvxhzh2dmazxgbc14ahg1lxs9mn82my2p743f8"; depends=[cmm numDeriv Rsolnp]; };
-  mirt = derive2 { name="mirt"; version="1.28"; sha256="1ykki146wgdb0smdly0b2hqzvk7b31xmd1kgw69505mbm49yhzvh"; depends=[dcurver Deriv GPArotation lattice mgcv Rcpp RcppArmadillo vegan]; };
-  mirtCAT = derive2 { name="mirtCAT"; version="1.7"; sha256="038jp680hn17q8hcz346j4i0p913h7gbkqfswn0ygf1kwgsz1mpa"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; };
+  mipfp = derive2 { name="mipfp"; version="3.2.1"; sha256="1gxazpg81vj5dywpb6jb29188jw28qil6pfygawa7znnjn3k5ca6"; depends=[cmm numDeriv Rsolnp]; };
+  mirt = derive2 { name="mirt"; version="1.29"; sha256="0rmnzs39x4b6v5sb8v23cxnsndnck4mb9757987r8wdnhbdx0hkr"; depends=[dcurver Deriv GPArotation lattice mgcv Rcpp RcppArmadillo vegan]; };
+  mirtCAT = derive2 { name="mirtCAT"; version="1.8"; sha256="1syv0j4gcdx5860kxshmr0m2d1klmxfi4bwcsc7lc5ss5kw63yi1"; depends=[lattice lpSolve markdown mirt pbapply Rcpp RcppArmadillo shiny]; };
   misc3d = derive2 { name="misc3d"; version="0.8-4"; sha256="0qjzpw3h09qi2gfz52b7nhzd95p7yyxsd03fldc9wzzn6wi3vpkm"; depends=[]; };
   miscF = derive2 { name="miscF"; version="0.1-4"; sha256="1kvkbvrmaqclwdfghkrsmnzb6xbi97icay2wwb7k5m34xhx4ha82"; depends=[MASS MCMCpack mvtnorm R2jags]; };
   miscFuncs = derive2 { name="miscFuncs"; version="1.2-10"; sha256="1kqya581n76ff9avhj6xm6nwsbw7zlm4mwy0vyvdlqlf7c381qq0"; depends=[mvtnorm roxygen2]; };
@@ -8570,21 +8951,21 @@ in with self; {
   missRanger = derive2 { name="missRanger"; version="1.0.3"; sha256="00gcnpvvy65v6k5qjk6xavdis02l8s9a56vwi39kw0rw8yhkla73"; depends=[FNN ranger]; };
   mistat = derive2 { name="mistat"; version="1.0-5"; sha256="1vyx918b7iv1wcnk23bnlxljwy0hglpdx5drhrs5qcd45f6jrghc"; depends=[]; };
   mistral = derive2 { name="mistral"; version="2.1.0"; sha256="1cr79p8q82lpj9d0y6q24xmfkxmnlqv8ivkd0baj7fxfb1nb8sak"; depends=[DiceKriging doParallel e1071 emoa foreach ggplot2 iterators Matrix mvtnorm quadprog]; };
-  mitml = derive2 { name="mitml"; version="0.3-5"; sha256="1s888r9y2ri39b48h1iypps6lddqkqv3g31l2sjmi2pvyccfpkwb"; depends=[haven jomo pan]; };
+  mitml = derive2 { name="mitml"; version="0.3-6"; sha256="1pkqv4qazih3byws5z6629pp232n8ra56lip7502727b0b4bsndw"; depends=[haven jomo pan]; };
   mitools = derive2 { name="mitools"; version="2.3"; sha256="0w76zcl8mfgd7d4njhh0k473hagf9ndcadnnjd35c94ym98jja33"; depends=[]; };
   mix = derive2 { name="mix"; version="1.0-10"; sha256="0z16ddbh79kqxi64bl1h2sd8anpgc48n9d1nyr2zlln39nhv8w8g"; depends=[]; };
   mixAK = derive2 { name="mixAK"; version="5.1"; sha256="0i9gp66d1mzskiif0bk0w88cinc923fsj4vi7pv0im2cwmxksiiq"; depends=[coda colorspace fastGHQuad lme4 mnormt]; };
   mixEMM = derive2 { name="mixEMM"; version="1.0"; sha256="0344ay1avi37kvh5w9bknayx67yh7rflj6zhw68d2888v7cbghjy"; depends=[]; };
-  mixKernel = derive2 { name="mixKernel"; version="0.1"; sha256="0p0m081ivpc22z3p8308z12fcdjnid86niwk4i97dvz12dr8v9ws"; depends=[corrplot ggplot2 LDRTools mixOmics phyloseq psych quadprog]; };
+  mixKernel = derive2 { name="mixKernel"; version="0.2"; sha256="0jhgyipy4635inzm0lsbi8inlbiahyfffn2ccnhyil6kaw3ky2pr"; depends=[corrplot ggplot2 LDRTools Matrix mixOmics phyloseq psych quadprog vegan]; };
   mixOmics = derive2 { name="mixOmics"; version="6.3.2"; sha256="1lqhrgsfdlv1ji965zf9ndg6ngylbmqahcslwirwd5vrjvlbzjb2"; depends=[corpcor dplyr ellipse ggplot2 gridExtra igraph lattice MASS matrixStats rARPACK RColorBrewer reshape2 rgl tidyr]; };
   mixPHM = derive2 { name="mixPHM"; version="0.7-2"; sha256="1wvkdb9zj2j8dpppnyins05rg877zbydqsl3qaan62wznkknxcac"; depends=[lattice survival]; };
   mixR = derive2 { name="mixR"; version="0.1.1"; sha256="1xd3v5rk59380zh7r6l5blmcy4gib9xp44j5dcrk6ivs6fgycsxh"; depends=[ggplot2 Rcpp]; };
   mixRasch = derive2 { name="mixRasch"; version="1.1"; sha256="1r067pv7b54y1bz8p496wxv4by96dxfi2n1c99gziqf5ramx3qzp"; depends=[]; };
-  mixcat = derive2 { name="mixcat"; version="1.0-3"; sha256="0xszngygd3yj61pvv6jrrb5j0sxgpxzhlic69xrd5mv5iyw0cmxd"; depends=[statmod]; };
+  mixchar = derive2 { name="mixchar"; version="0.1.0"; sha256="1az2gggwipkzg86pvn9w2csgfgrpdc88kca51f5qcw0zk4wx5hlx"; depends=[minpack_lm nloptr tmvtnorm zoo]; };
   mixdir = derive2 { name="mixdir"; version="0.1.0"; sha256="0kr82g7s9vp3i1vyqfpn30avdxg86xh0hgngbqmm5l2brd5sa4wx"; depends=[extraDistr Rcpp]; };
   mixdist = derive2 { name="mixdist"; version="0.5-5"; sha256="1wchhysd33xz395hq4wgd3zv1qc92pbiqxqd7g2v6m1pb0j8ma9g"; depends=[]; };
   mixedMem = derive2 { name="mixedMem"; version="1.1.0"; sha256="0j8w3qfhanyrkkxipdxfdajv15qba8r2rm06iiv3kywficzgkxgv"; depends=[BH gtools Rcpp RcppArmadillo]; };
-  mixedsde = derive2 { name="mixedsde"; version="4.0"; sha256="1hryscff4i4ayqxv9imnx4g56497s1s95fzqv8wkwcpfcqi20bqf"; depends=[MASS moments plot3D sde]; };
+  mixedsde = derive2 { name="mixedsde"; version="5.0"; sha256="0ss1ng4nx91gxj85wxxfyh9ljxsj3ag6lsj1a5d2815p9jzl7dsv"; depends=[MASS moments plot3D sde]; };
   mixexp = derive2 { name="mixexp"; version="1.2.5"; sha256="0nbf10xhrr51rb1b2apcj4p3ci8xbi7flgz500ar3mxh8h8l74sq"; depends=[daewr gdata lattice]; };
   mixlink = derive2 { name="mixlink"; version="0.1.5"; sha256="0ywgrcplhspc0x5fniw52xqz20y7j9mwgy4ky8lv3vii659mr52m"; depends=[mvtnorm numDeriv Rcpp RcppGSL]; };
   mixlm = derive2 { name="mixlm"; version="1.2.3"; sha256="0i7nrn31yaicdpwfssnid1x8w51iv17lcl96zfr1pgrf97d7gkqd"; depends=[car leaps multcomp pls pracma]; };
@@ -8597,15 +8978,15 @@ in with self; {
   mixtools = derive2 { name="mixtools"; version="1.1.0"; sha256="13wdm0xs5bakhpa8ypg6lvhjaqkxyabwz4glxdwn0jwdvkcdhgsl"; depends=[MASS segmented survival]; };
   mixtox = derive2 { name="mixtox"; version="1.3.2"; sha256="0mdnp1yrcxvan5l7jj91s41vq5y1kdnkhhinqrklmg4ph5f29dmq"; depends=[minpack_lm]; };
   mixture = derive2 { name="mixture"; version="1.5"; sha256="1ahr8jw93xnd5hmy3h4sr209ql7gmkwbvnnfmiplbpc17czqgcn4"; depends=[]; };
-  mize = derive2 { name="mize"; version="0.1.1"; sha256="18mnpwwbwlyx0ixsjqai28ahp4g0wncv8c5qwy17xq2zbhwlq3jh"; depends=[]; };
+  mize = derive2 { name="mize"; version="0.2.0"; sha256="13l6f0i6k2y2cqad80zi35vqpkd0p8xl0hmf8djrsk1nmjqap1gc"; depends=[]; };
   mizer = derive2 { name="mizer"; version="1.0"; sha256="0qsf3wd8ipql344i8brv1d7qbr9g5y0qhh00lxj9n8sgjg52x7a5"; depends=[deSolve ggplot2 plyr progress Rcpp reshape2]; };
   mkde = derive2 { name="mkde"; version="0.1"; sha256="04v84arpnmjrkk88ffphnhkz32x7y0dypk75jfmbbgcgv59xlglv"; depends=[raster Rcpp sp]; };
-  mkin = derive2 { name="mkin"; version="0.9.47.1"; sha256="1cz6f9122im594dvqdmdm9yjlnmwzrx2ka63dgj0zf1ysqzf0872"; depends=[deSolve FME inline minpack_lm R6 rootSolve]; };
+  mkin = derive2 { name="mkin"; version="0.9.47.5"; sha256="1cnzvq3wbkyzxajwk8h7pxyabfw0dbiv6dwga337ssf643rq9a8v"; depends=[deSolve FME inline minpack_lm R6 rootSolve]; };
   mknapsack = derive2 { name="mknapsack"; version="0.1.0"; sha256="1kzmx7d512681a4hjirfgcd7a8rvndb4da66p16gms5nnxzsby9c"; depends=[assertthat data_table lpSolve]; };
   mkssd = derive2 { name="mkssd"; version="1.1"; sha256="1qqzy6fn6sc3lxahc19hzzf1hzxsyvxqi7npynw0vkknlrvh2ijp"; depends=[]; };
   mlDNA = derive2 { name="mlDNA"; version="1.1"; sha256="0d9lydiwar98hin26slnym4svn0g1xmyn212vvzsx9lzlvs5a9k4"; depends=[e1071 igraph pROC randomForest ROCR rsgcc snowfall]; };
   mlPhaser = derive2 { name="mlPhaser"; version="0.01"; sha256="1s2mqlnbcjdkx0ghvr2sw9rzggqa4jy2vzi9vbyqkh6795lgck6n"; depends=[]; };
-  mlVAR = derive2 { name="mlVAR"; version="0.4"; sha256="08iaq6wq0ngd60nhmlj8c0x8r1fal1zfv2zpd6ll54szcvdbxahr"; depends=[abind arm clusterGeneration corpcor dplyr lme4 MplusAutomation mvtnorm plyr qgraph]; };
+  mlVAR = derive2 { name="mlVAR"; version="0.4.1"; sha256="04ginifm625k7qy5s2s7rwqa5gwi8frrd2vs332jiw2sgpbi45ig"; depends=[abind arm clusterGeneration corpcor dplyr graphicalVAR lme4 MplusAutomation mvtnorm plyr qgraph]; };
   mlapi = derive2 { name="mlapi"; version="0.1.0"; sha256="023vk5bp8cjcq88sapkl87kdxr92bay1dyxl6xirnyj699pyj51k"; depends=[Matrix R6]; };
   mlbench = derive2 { name="mlbench"; version="2.1-1"; sha256="1rp035qxfgh5ail92zjh9jh57dj0b8babw3wsg29v8ricpal30bl"; depends=[]; };
   mlbgameday = derive2 { name="mlbgameday"; version="0.1.2"; sha256="03mz88y29wkn3510p8kzhapx0gj0mkqf0bgcjc0jpph2r1020c9a"; depends=[DBI doParallel dplyr foreach iterators magrittr purrr stringr tidyr xml2]; };
@@ -8618,24 +8999,24 @@ in with self; {
   mlegp = derive2 { name="mlegp"; version="3.1.7"; sha256="1q0mxvr23qcxvf8k2cgs4m8yfp1gbkmprp964w8viy30japmx16l"; depends=[]; };
   mleur = derive2 { name="mleur"; version="1.0-6"; sha256="0mddphq3b6y2jaafaa9y41842kcaqdl3dh7j4pva55q2vcjcclj7"; depends=[fGarch lattice stabledist urca]; };
   mlf = derive2 { name="mlf"; version="1.2.1"; sha256="09ihnibpknpp26hdlbxyr99yz7z0n8qpsjs5aq3zngng0yh3wdn9"; depends=[]; };
+  mlflow = derive2 { name="mlflow"; version="0.7.0"; sha256="1dx6g4656y6z90dmsfpb0l9wb1yf8g40m62x8fwny51ld3d3cfxm"; depends=[aws_s3 forge fs git2r httpuv httr jsonlite openssl packrat processx pryr purrr reticulate rlang swagger withr xml2 yaml]; };
   mlgt = derive2 { name="mlgt"; version="0.16"; sha256="1nvdq6mvgr39ikkf73aggsb6pmbw132injj8fdkr8hgcmwm6lgd9"; depends=[seqinr]; };
   mlica2 = derive2 { name="mlica2"; version="2.1"; sha256="0c3m1zd9x99n6lw12hfzmd59355z51xa8rhg1h7qwfn9p86r826f"; depends=[]; };
   mljar = derive2 { name="mljar"; version="0.1.1"; sha256="1mw45aqjwklsnrfwf8656jf30miyrlxpz87z97nkv9i135yhwfx3"; depends=[httr jsonlite readr]; };
   mlmRev = derive2 { name="mlmRev"; version="1.0-6"; sha256="0mvmahnbbp478xwldj4wlsjib4v4afhs07643gxgcqpi56zbd5h7"; depends=[lme4]; };
   mlma = derive2 { name="mlma"; version="4.0-1"; sha256="0pk2h4m74r95dfkqzliixi6z1rwdfc6gbz8c3162y22m919f00vc"; depends=[car gplots lme4]; };
   mlmc = derive2 { name="mlmc"; version="1.0.0"; sha256="01h7w0ajyg3bccynlpbi3yjpy089wczbfbajpg6yw5v4dppw7k7a"; depends=[ggplot2 Rcpp]; };
-  mlmm_gwas = derive2 { name="mlmm.gwas"; version="1.0.3"; sha256="0k0q7l0dja6q5jl4p7fd16c95m83db8c7g34lnaymxll824ai1lq"; depends=[coxme Matrix multcomp multcompView sommer]; };
+  mlmm_gwas = derive2 { name="mlmm.gwas"; version="1.0.4"; sha256="1m58fp0izp03filb9wzw8fjrgy383p20jpynvgmxngbfp8bvspy6"; depends=[coxme Matrix multcomp multcompView sommer]; };
   mlmmm = derive2 { name="mlmmm"; version="0.3-1.2"; sha256="1m5ziiqs3ll1xjm1yf7x4sdc910jypn3kjnbadf95xxkvqmfrsqq"; depends=[]; };
   mlogit = derive2 { name="mlogit"; version="0.3-0"; sha256="0frggwb1yzfs229ys60qc4acfnq2zwjr6a1zb4fv07s1zlwrvnf1"; depends=[Formula lmtest MASS maxLik statmod zoo]; };
   mlogitBMA = derive2 { name="mlogitBMA"; version="0.1-6"; sha256="1wl8ljh6rr1wx7dxmd1rq5wjbpz3426z8dpg7pkf1x9wr94a2q25"; depends=[abind BMA maxLik]; };
-  mlr = derive2 { name="mlr"; version="2.12.1"; sha256="0b68pgx55f19i3pnci1n87cq2a7kfs6s2248zs1vg4xl5sw9ifww"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival XML]; };
-  mlrCPO = derive2 { name="mlrCPO"; version="0.3.4"; sha256="126kbfgcaqlvrpmz7v1l391x4v8sfzw7ccimz341im6n9ygp43rp"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; };
+  mlr = derive2 { name="mlr"; version="2.13"; sha256="07816gbswlv56qacf2byp5a5yg4hicx4kya49h9fmhfxmkkrnwp8"; depends=[backports BBmisc checkmate data_table ggplot2 parallelMap ParamHelpers stringi survival XML]; };
+  mlrCPO = derive2 { name="mlrCPO"; version="0.3.4-1"; sha256="1kq8y24vvzxp1jbn52cddh0gq183pbfqs0gpi17my5xh892aszi9"; depends=[backports BBmisc checkmate mlr ParamHelpers stringi]; };
   mlrMBO = derive2 { name="mlrMBO"; version="1.1.2"; sha256="1ziyiycgwr4vgilji8dkf1c0kyqjnbmqi3qj35q3si2xbnmcm14f"; depends=[backports BBmisc checkmate data_table lhs mlr parallelMap ParamHelpers smoof]; };
   mlsjunkgen = derive2 { name="mlsjunkgen"; version="0.1.1"; sha256="109ag52x4y3rzx8yccilrnl24mz4ximzx6v4lrbak7dpiclqrw7a"; depends=[]; };
-  mlt = derive2 { name="mlt"; version="1.0-2"; sha256="0yc1dij3q6nk15259mvl5bhnm9b70ix8nq5lniq40j1arh5v9nq0"; depends=[alabama basefun BB coneproj numDeriv sandwich survival variables]; };
-  mlt_docreg = derive2 { name="mlt.docreg"; version="1.0-1"; sha256="140bi0kjz5m7amwdxm2mpqn04i5wb1yjviwv34f1qjpzi4walml3"; depends=[mlt numDeriv]; };
+  mlt = derive2 { name="mlt"; version="1.0-3"; sha256="067j6gp5xh30ad46lp7x2n7kd8asbnchzlvsdgm8gq8gkd19icxx"; depends=[alabama basefun BB coneproj numDeriv sandwich survival variables]; };
+  mlt_docreg = derive2 { name="mlt.docreg"; version="1.0-2"; sha256="1dk27iq7ix7j06m34c8wi9433f7kd36499x24bswy89y10lqqsn9"; depends=[mlt numDeriv]; };
   mltools = derive2 { name="mltools"; version="0.3.5"; sha256="045v28w7vz1zjxim8vfc6ncvg2mavr1q332x0hzlqpfzrk7gz4vh"; depends=[data_table Matrix]; };
-  mlvocab = derive2 { name="mlvocab"; version="0.0.1"; sha256="0lv9aqrwm00jdklig80yi5lxj87sh6ysg7qkg0kf1nv05lkvrpb0"; depends=[digest Matrix Rcpp sparsepp]; };
   mlxR = derive2 { name="mlxR"; version="3.3.0"; sha256="0qbhmxmsyqfc2csk96qwizpjj7yk35r85rr5xaqkyr72mjn2m3gh"; depends=[ggplot2 Rcpp XML]; };
   mma = derive2 { name="mma"; version="6.1-0"; sha256="1rrnm7szlaly8klqgi8wdh5qvfx4kx5bkl1q2y9y6zjpxmb4zvi6"; depends=[car doParallel foreach gbm gplots plotrix survival]; };
   mmabig = derive2 { name="mmabig"; version="1.0-0"; sha256="1srrfk6dqqfc504w8rhrfag3lzsc55sw3ckkmgph6k8ss99zn285"; depends=[car glmnet gplots mma survival]; };
@@ -8651,7 +9032,7 @@ in with self; {
   mmm2 = derive2 { name="mmm2"; version="1.2"; sha256="1h9pn5s3jjs4bydrr1qysjb4hv7vs4h3m7mvi22ggs2dzyz3b298"; depends=[gee]; };
   mmmgee = derive2 { name="mmmgee"; version="1.12"; sha256="083hv7g2cy2r9qkwc2fihglf4avsl1dsjyy74mj39gk1pss8mh6j"; depends=[Matrix mvtnorm]; };
   mmod = derive2 { name="mmod"; version="1.3.3"; sha256="1dz6887mlqbagjj98wcabmxj9hvsz8pgsizy1fqkwjhhs44c62y4"; depends=[adegenet pegas]; };
-  mmpf = derive2 { name="mmpf"; version="0.0.4"; sha256="1lskpnhqiimf7ch5xg5f0mpvhxy18a5w9daxpp4133vx1dydm4c2"; depends=[checkmate data_table]; };
+  mmpf = derive2 { name="mmpf"; version="0.0.5"; sha256="1w1ll1l7yzwb1wmlrcfpgqyzni7yb20kxy422y867hx2ndxlfwpz"; depends=[checkmate data_table]; };
   mmpp = derive2 { name="mmpp"; version="0.6"; sha256="16aypjf4i0ya3qgxqrrg8y0xbnq1pnqky1dpkgln5q494hphyg91"; depends=[]; };
   mmppr = derive2 { name="mmppr"; version="0.1"; sha256="0fswkqcw0xkqd9gmqabb61i32zscp5jzfx0z43wq7mrlwynryylv"; depends=[expm reshape2]; };
   mmtfa = derive2 { name="mmtfa"; version="0.3"; sha256="0qfszr6f10v27w1pfns78dyarznqryl4m1ppyqap7l8fc12sliky"; depends=[matrixStats mvnfast]; };
@@ -8660,10 +9041,10 @@ in with self; {
   mnlogit = derive2 { name="mnlogit"; version="1.2.5"; sha256="0vwragk71hisz7dy4h5i6zl9yp6wvzwlnfyw2kprnd94y02laq63"; depends=[Formula lmtest mlogit]; };
   mnormpow = derive2 { name="mnormpow"; version="0.1.1"; sha256="0z53vwhkhkkr6zrjhd3yr14mb02vh7lr63frf0ivajndxiap0s9v"; depends=[]; };
   mnormt = derive2 { name="mnormt"; version="1.5-5"; sha256="1b34xxrnf35khsx82mhvmk96sgfr2flyasaah7qkb2976pwxay7z"; depends=[]; };
-  mnreadR = derive2 { name="mnreadR"; version="2.0.0"; sha256="0m8h4g43iwq2ri6y9xk68g2rrikxngqcpqy6jlva84gsxigbzbql"; depends=[dplyr ggplot2 nlme tibble tidyr]; };
+  mnreadR = derive2 { name="mnreadR"; version="2.1.0"; sha256="1299jc72rr8c14kl5510jc5pj2l7l2xwi593a9zg853j4bmx3nim"; depends=[dplyr ggplot2 nlme tibble tidyr]; };
   mobForest = derive2 { name="mobForest"; version="1.3.0"; sha256="0gzn3lyi9ph5dcrfbw4xs4rkf5ngf28abf1n8vap96fdhc6nmg88"; depends=[modeltools party sandwich strucchange zoo]; };
   mobsim = derive2 { name="mobsim"; version="0.1.0"; sha256="077hw1162giwc90y5dvj9052i5hxdf2ii29m9q8ky028375dsd0f"; depends=[Rcpp sads vegan]; };
-  mockery = derive2 { name="mockery"; version="0.4.1"; sha256="1h8976rlwykpqrh2p6x3bcyxdhlhcwsi1wvkdk08k6hynbw877cm"; depends=[testthat]; };
+  mockery = derive2 { name="mockery"; version="0.4.1.1"; sha256="1vfmjcjjyw2v5y64hmpfib6v0f6ms4k5ycvc9pmj9l4nkzq2al6b"; depends=[testthat]; };
   mockr = derive2 { name="mockr"; version="0.1"; sha256="0340v6189ivlzzriwk7yhf3v2k651x05fd1xrqfxxjgwhysaqj6z"; depends=[lazyeval]; };
   mod09nrt = derive2 { name="mod09nrt"; version="0.14"; sha256="1wn1y33bj9r712l0f063j5gcl423anjzmvgfy0ddihcrbpz4l7a0"; depends=[]; };
   modEvA = derive2 { name="modEvA"; version="1.3.2"; sha256="0p41fl0k780rx1vmq9laknz01ar6507sj8ss8kphrqkjnymsi2a0"; depends=[]; };
@@ -8678,39 +9059,41 @@ in with self; {
   modelObj = derive2 { name="modelObj"; version="3.0"; sha256="0wc67zsh26zyr7x9s229g2mppfk6g6z12j74zj2bdhk2m7i2x3zq"; depends=[]; };
   modeldb = derive2 { name="modeldb"; version="0.1.0"; sha256="1pb9vnviz0sy9cz2jns34j7fwadi0j250smixr840hjjvvgxyzwf"; depends=[dplyr ggplot2 progress purrr readr rlang tibble tidyr]; };
   modelfree = derive2 { name="modelfree"; version="1.1-1"; sha256="0ammka2wxx90z31zfzypw9dk5n118l0vxhykxbx6srfig2vdyn82"; depends=[PolynomF SparseM]; };
+  modelgrid = derive2 { name="modelgrid"; version="1.1.0.0"; sha256="0ljqdr479rv0glpf5grmx23f9g6dmc62pps47wdr89ja0iv7abp9"; depends=[caret dplyr ggplot2 lattice magrittr purrr]; };
   modelr = derive2 { name="modelr"; version="0.1.2"; sha256="09whg3q5xq6csbqwgwfwav09vda8vgady5j70sk52xcn232k363a"; depends=[broom dplyr magrittr purrr rlang tibble tidyr]; };
-  modeltools = derive2 { name="modeltools"; version="0.2-21"; sha256="0ynds453xprxv0jqqzi3blnv5w6vrdww9pvd1sq4lrr5ar3k3cq7"; depends=[]; };
+  modeltools = derive2 { name="modeltools"; version="0.2-22"; sha256="1s9lmkac3rl0nknf4wizfhg7ryq7c8yvvyc4z619238br27hhsi5"; depends=[]; };
   modelwordcloud = derive2 { name="modelwordcloud"; version="0.1"; sha256="0ardib0h923i7jk8bgcq6pn2zazx9acf9sdggifsk46hdz8hvqnm"; depends=[]; };
-  moderndive = derive2 { name="moderndive"; version="0.1.1"; sha256="11xxklaqizlx36nyx3nzj9xkszg99qsmjqmr59z235h4wkrw8xg3"; depends=[assertive broom dplyr formula_tools janitor knitr magrittr rlang stringr tibble]; };
+  moderndive = derive2 { name="moderndive"; version="0.2.0"; sha256="165dll1bkjmd949mwy165hrz22ajbkn3ap5l8f8pqwksw78rsgqb"; depends=[assertive broom dplyr formula_tools infer janitor knitr magrittr rlang stringr tibble]; };
   modes = derive2 { name="modes"; version="0.7.0"; sha256="185qjrmz2sj0l5931g4d3kx3jpgjn4rf4lln84h6g97prk1ykqmj"; depends=[]; };
   modest = derive2 { name="modest"; version="0.3-1"; sha256="07rs014hdcabp2n0gg14pz2gmqgbw38vjv7a80vkzzh3601hxqws"; depends=[knitr rhandsontable shiny shinyBS]; };
   modifiedmk = derive2 { name="modifiedmk"; version="1.1.0"; sha256="08nyn1rh28rs9wpz9jvi4pyrhrlh4qaklkx4za0h027lv3086ja3"; depends=[boot]; };
   modiscloud = derive2 { name="modiscloud"; version="0.14"; sha256="0vwhfp50yb21xkanvzk983vk0laflv60kj1ybx3fydfljwqx0rwj"; depends=[date raster rgdal sfsmisc sp]; };
   modmarg = derive2 { name="modmarg"; version="0.9.2"; sha256="1clyfvn5k87nyh5cj4b0yi2zkavwvnirhlirxkzi8m2qijdl9vgh"; depends=[]; };
+  modopt_matlab = derive2 { name="modopt.matlab"; version="1.0-2"; sha256="0g5mswalv4y7p1k3n8a6qf7wb072m4bjq2ml2j83dz2j2bmvygsd"; depends=[ROI ROI_plugin_glpk ROI_plugin_quadprog]; };
   moduleColor = derive2 { name="moduleColor"; version="1.08-3"; sha256="183l968l49b7jbmvsjjnmk1xd36cpjkp777c00gw1f73h6nb2na8"; depends=[dynamicTreeCut impute]; };
-  modules = derive2 { name="modules"; version="0.6.0"; sha256="0nzypmx8p84dd7pdw7ilrjrc2nji5qzwylb9yn1zmr8wp5lzvidc"; depends=[stringr]; };
+  modules = derive2 { name="modules"; version="0.7.0"; sha256="0ww2abbrd4s6qf8hfhpwg92gpyvbsrwjf6l0837x0705d81cmgw3"; depends=[stringr]; };
   modygliani = derive2 { name="modygliani"; version="1.0"; sha256="01g96cdm4hgbsh6xsdfjg7vp7zb138sxwgv0msrlm27a6p4fcnlx"; depends=[]; };
   moezipfR = derive2 { name="moezipfR"; version="1.0.2"; sha256="0sfl1c7cvm1milcglcvz9lyvgricsdm7shx0jxyn50y7xz0padww"; depends=[tolerance VGAM]; };
   mogavs = derive2 { name="mogavs"; version="1.1.0"; sha256="0lhmwdv991bv7j8k066jr7ii94w60ydjpf5pzmv8jlblf3w2pr02"; depends=[cvTools]; };
   mokken = derive2 { name="mokken"; version="2.8.11"; sha256="1dypdf5gdz0hr3izafzfknyqx2vbr1z77c4c7vqdygv2wzhwy5i1"; depends=[poLCA]; };
   moko = derive2 { name="moko"; version="1.0.1"; sha256="1d1gyv44z8k196hfh8a9iccmlrwb42bj1xzabs07h306gpi9m73d"; depends=[DiceKriging DiceOptim emoa GenSA GPareto mco]; };
-  molaR = derive2 { name="molaR"; version="4.3"; sha256="1bzk7k6d1zbi0fhf9xwdg5mv7dcgajjbb6wxafx4nc2fjxhlldzi"; depends=[alphahull rgl Rvcg]; };
+  molaR = derive2 { name="molaR"; version="4.4"; sha256="0prd2avg3aj4y8zi7yd2sgcary8igqxrjcp0igail84kpnal53zq"; depends=[alphahull rgl Rvcg]; };
   mombf = derive2 { name="mombf"; version="2.1.2"; sha256="1lbg91ih8djxv8brwzwpxwzpbnhl7p3rj585kagykknknq5r6csj"; depends=[mclust mgcv mvtnorm ncvreg survival]; };
   momentchi2 = derive2 { name="momentchi2"; version="0.1.5"; sha256="1fv0jmwws4mkl9dsaybfpj29ncvqx2idsijgwz2qjblcg309a6k9"; depends=[]; };
   moments = derive2 { name="moments"; version="0.14"; sha256="0f9y58w1hxcz4bqivirx25ywlmc80gbi6dfx5cnhkpdg1pk82fra"; depends=[]; };
   momentuHMM = derive2 { name="momentuHMM"; version="1.4.2"; sha256="02ia80h78msgb4c474h47cbd8n0j3bfrjcq4wl2937licdzfl43s"; depends=[argosfilter boot Brobdingnag car CircStats conicfit crawl doParallel dplyr foreach geosphere ggmap ggplot2 gstat LaplacesDemon magrittr MASS mitools moveHMM mvtnorm nleqslv numDeriv prodlim qdapRegex raster Rcpp RcppArmadillo sp survival]; };
   momr = derive2 { name="momr"; version="1.1"; sha256="091vzaw8dm29q89lg2iys25rbg2aslgdn9sk06x038nngxdrn95r"; depends=[gplots Hmisc nortest]; };
   mondate = derive2 { name="mondate"; version="0.10.01.02"; sha256="18v15y7fkll47q6kg7xzmj5777bz0yw4c7qfiw2bjp0f3b11qrd2"; depends=[]; };
-  mongolite = derive2 { name="mongolite"; version="1.6"; sha256="0wam3sbf5p7d5ikvmf0z8cghk2lrw2c3qyh9pbffm62vdbq7wx86"; depends=[jsonlite mime openssl]; };
+  mongolite = derive2 { name="mongolite"; version="2.0"; sha256="1icbxsnrah9dxcn1rf678853g8whdj41pj3zwv8kl61vjrg8r6rn"; depends=[jsonlite mime openssl]; };
   monitoR = derive2 { name="monitoR"; version="1.0.7"; sha256="1h1g0m1j13mz37xxwck4s7a0bfqvi0nrzfw60j7bkzaah8zxcc9n"; depends=[tuneR]; };
   monkeylearn = derive2 { name="monkeylearn"; version="0.2.0"; sha256="18lpfs64h0hy4vkdjlnmxwgagvf54kn8a1c866vv00ckyp85fvn2"; depends=[cowsay digest dplyr httr jsonlite magrittr purrr ratelimitr tibble tidyr]; };
   monmlp = derive2 { name="monmlp"; version="1.1.5"; sha256="19cx60csm8mnf6ksg64vlhi8wi1c7bmv9l55y9zmaljblr0kmzxf"; depends=[optimx]; };
   monographaR = derive2 { name="monographaR"; version="1.2.0"; sha256="0sis2kw07ifq54w6p56zspmlnvxvq6ajb0sdvc9fk480sfxg9806"; depends=[circular maptools png raster rmarkdown sp]; };
-  monomvn = derive2 { name="monomvn"; version="1.9-7"; sha256="1bz967sl6ji84x9v0fypjn75d39naaqgvw31n9lgcd5lyj39hbsk"; depends=[lars MASS mvtnorm pls quadprog]; };
+  monomvn = derive2 { name="monomvn"; version="1.9-8"; sha256="1bsn3i0j4mf39cxcyqwb1fgafdyv6bmvsh803d7692h93zc3llqj"; depends=[lars MASS mvtnorm pls quadprog]; };
   monoreg = derive2 { name="monoreg"; version="1.2"; sha256="16n622j1j998a5fhn1c1qbzk5bfa5h09d95ry89gsd00p40hqg0a"; depends=[]; };
   monotonicity = derive2 { name="monotonicity"; version="1.1"; sha256="06irf6jlmhmj70c45ilf66yy2k81i3rg1qgw9ch08mj1j8ahyx7x"; depends=[lmtest MASS sandwich]; };
   monreg = derive2 { name="monreg"; version="0.1.3"; sha256="08rcg2xffa61cgqy8g98b0f7jqhd4yp8nx6g4bq3g722aqx4nfg3"; depends=[]; };
-  moonBook = derive2 { name="moonBook"; version="0.1.8"; sha256="1gdzpjc16l2alvf968011njgl8i7fhi2l5v97b47dh4wlnziq68x"; depends=[nortest survival]; };
+  moonBook = derive2 { name="moonBook"; version="0.2.3"; sha256="0hys56mwbm776ff7dibi8wzyf69qiais9rs1jazv79lk6h56s9s6"; depends=[magrittr nortest purrr sjmisc stringr survival]; };
   moonsun = derive2 { name="moonsun"; version="0.1.3"; sha256="1y8mwxmcy4iz444c2fayyi4i0jk1k561dp6cbjg2b3lmdml0whmi"; depends=[]; };
   mopa = derive2 { name="mopa"; version="1.0.1"; sha256="1v876al1afli002v44b4j2acb6n66f0hzz4bmcl60jyny43d1n0c"; depends=[abind dismo e1071 earth gtools lattice PresenceAbsence randomForest ranger raster rpart sampling sp spam spatstat splancs tree]; };
   mopsocd = derive2 { name="mopsocd"; version="0.5.1"; sha256="10hssnm1afqmxa9kw6ifqnz3p3yyjrmxgi98zlj31a5g4nis8wb1"; depends=[]; };
@@ -8718,7 +9101,7 @@ in with self; {
   morpheus = derive2 { name="morpheus"; version="0.2-0"; sha256="07gk05qpabbg96svgnp2m9sw3fxsh2mgfwyda423c03yhxn1pnsm"; depends=[jointDiag MASS pracma]; };
   morse = derive2 { name="morse"; version="3.1.1"; sha256="0j0h8jx3mx20dfdzzkn48amq5fc6mdfkb06fznqbyxrahdgwj5wg"; depends=[coda dplyr epitools ggplot2 gridExtra magrittr reshape2 rjags tibble tidyr zoo]; };
   mortAAR = derive2 { name="mortAAR"; version="1.0.1"; sha256="1dgxx5sh0nskzbigr8yq389lsnalp45d6m92q6g07jpqm7nzbazd"; depends=[magrittr Rdpack reshape2]; };
-  mosaic = derive2 { name="mosaic"; version="1.3.0"; sha256="1iaiddg81b49296jch45m9hlybv6iia5vkl2s6pkzjp2ii5yvf8k"; depends=[broom dplyr ggdendro ggformula ggplot2 glue gridExtra lattice latticeExtra lazyeval MASS Matrix mosaicCore mosaicData readr tidyr]; };
+  mosaic = derive2 { name="mosaic"; version="1.4.0"; sha256="10jbrg8kli00kfgbh2f67bymm5cnlancc9dplb1j7fl552yjddn2"; depends=[broom dplyr ggdendro ggformula ggplot2 ggrepel glue gridExtra lattice latticeExtra lazyeval MASS Matrix mosaicCore mosaicData readr tidyr]; };
   mosaicCalc = derive2 { name="mosaicCalc"; version="0.5.0"; sha256="05s14rmgi15xcz50hcz7l26l95yx9g4i3kihzh0laz8bpi443i39"; depends=[MASS mosaic mosaicCore]; };
   mosaicCore = derive2 { name="mosaicCore"; version="0.6.0"; sha256="1klw97h6lchw1cpcl8s637ikcl428cckmjq0czi7mibh9q9mw72z"; depends=[dplyr lazyeval MASS rlang tidyr]; };
   mosaicData = derive2 { name="mosaicData"; version="0.17.0"; sha256="04z0mdm52mykqsxsinhmsihn181zf6cw321gayk2rjp7lj7mwdq9"; depends=[]; };
@@ -8728,16 +9111,17 @@ in with self; {
   moult = derive2 { name="moult"; version="2.1.0"; sha256="0k0969fwy648x25xw42w5ncimyw2cbq305rzf4m77p3pf0k50m9b"; depends=[Formula Matrix]; };
   mountainplot = derive2 { name="mountainplot"; version="1.2"; sha256="1bbgkps1yhfa0lmapqkhhl5mc63p0gzszxw2g910dbi1cjc0pphx"; depends=[lattice]; };
   mousetrack = derive2 { name="mousetrack"; version="1.0.0"; sha256="0lf0xh0c3xl27nh5w8wwyrm2jfzfajm2f73xjdgf746dp365qc8n"; depends=[pracma]; };
-  mousetrap = derive2 { name="mousetrap"; version="3.1.0"; sha256="1r1cpfn6bcgk66lw0la6r3bsv62yhp2m3jkwn0g8rbwrhp9jyl6p"; depends=[cstab diptest dplyr fastcluster fields ggplot2 magrittr pracma psych RColorBrewer Rcpp scales tidyr]; };
-  movMF = derive2 { name="movMF"; version="0.2-2"; sha256="0kk3b16vlr6nbqn9fzgk5pb4nyy9w9b5x7khyvn34b9r0pnqmmds"; depends=[clue skmeans slam]; };
-  move = derive2 { name="move"; version="3.0.2"; sha256="0pi59k2kq1z92qgsbbqn1cjx0rbkjzjhaskk76wv95s3078k062d"; depends=[geosphere httr raster Rcpp rgdal sp xml2]; };
+  mousetrap = derive2 { name="mousetrap"; version="3.1.1"; sha256="150760bpalssalh2grh4jfpw3vsbysnnfvnvy2xk1yrcn3234ynj"; depends=[cstab diptest dplyr fastcluster fields ggplot2 magrittr pracma psych RColorBrewer Rcpp scales tidyr]; };
+  movMF = derive2 { name="movMF"; version="0.2-4"; sha256="0j5gp1l374479lsijw1hz00pxs09zzh7hapljv80lsvr24vfscpa"; depends=[clue skmeans slam]; };
+  move = derive2 { name="move"; version="3.1.0"; sha256="0f5h5apwhp2z4ya8mkiflqfp46kmhfdr4zssi3rpkyl615d3dz9z"; depends=[geosphere httr memoise raster Rcpp rgdal sp xml2]; };
   moveHMM = derive2 { name="moveHMM"; version="1.6"; sha256="1wz8yg87rxkq70hnahv1jd027938vl9g4wr9zvnq24vwc7hzdafz"; depends=[boot CircStats geosphere ggmap ggplot2 MASS numDeriv Rcpp RcppArmadillo sp]; };
-  moveVis = derive2 { name="moveVis"; version="0.9.6"; sha256="15w11zdi2amzvq7xgz5wsf9136s127inc44x8cl3ra7jy2sbgpiy"; depends=[dismo geosphere ggplot2 gridExtra lubridate maptools move pbapply plyr raster rasterVis RCurl RStoolbox simecol sp zoo]; };
+  moveVis = derive2 { name="moveVis"; version="0.9.8"; sha256="0dvspbivmw7h9safhwl5cm435617ir9xig07vng57lmiwkjlfm3v"; depends=[dismo geosphere ggplot2 gridExtra lubridate maptools move pbapply plyr raster rasterVis RStoolbox simecol sp zoo]; };
   moveWindSpeed = derive2 { name="moveWindSpeed"; version="0.2.1"; sha256="020bl3i0i393dfknix03k8y70fjsf0lbw0mqrnhwsvz8kwrw3hi1"; depends=[move Rcpp]; };
+  movecost = derive2 { name="movecost"; version="0.1"; sha256="0h1xc5985r696lvwqncxd6blvzxzrgsw27wcw8cllg92yfzjnwks"; depends=[gdistance raster rgdal rgeos sp]; };
   mozzie = derive2 { name="mozzie"; version="0.1.0"; sha256="09dwrv4r0hi19gzi1vpif3q4wlbny9h22430g1hhv0wkqs86mhmw"; depends=[]; };
   mp = derive2 { name="mp"; version="0.4.1"; sha256="0awvwqwb25q47j14b450k1k5mh2yzwhn7gizjv5j7lyiamk30iwq"; depends=[Rcpp RcppArmadillo]; };
   mpa = derive2 { name="mpa"; version="0.7.3"; sha256="0mhnsbgr77fkn957zfiw8skyvgd084rja1y4wk5zf08q5xjs2zvn"; depends=[network]; };
-  mpath = derive2 { name="mpath"; version="0.3-4"; sha256="0qn2nqravnfjjr76p2049z24cwfzy4av8xr2rvpgkan14jcm6xra"; depends=[bst doParallel foreach glmnet MASS numDeriv pscl]; };
+  mpath = derive2 { name="mpath"; version="0.3-5"; sha256="1yv4pl6ph3d5cfrg1li5capcsvl3h321s0bvzl6mkcn0vnm23jdm"; depends=[bst doParallel foreach glmnet MASS numDeriv pscl]; };
   mpbart = derive2 { name="mpbart"; version="0.2"; sha256="1145n0lxmm0kjm2lc358d79hqws48crj17pjvmchl1pbfd7zi4r8"; depends=[bayesm cvTools mlbench mlogit]; };
   mpcv = derive2 { name="mpcv"; version="1.1"; sha256="0vwycspiw9saj811f6alkbijivy7szpahf35bxn2rpn2bdhbn21i"; depends=[lpSolve]; };
   mpe = derive2 { name="mpe"; version="1.0"; sha256="17bgdbg1zrf78djd3mwycidwibxvsis7pwkrcynvghcc8l2zfci9"; depends=[mvtnorm]; };
@@ -8752,15 +9136,15 @@ in with self; {
   mpt = derive2 { name="mpt"; version="0.5-4"; sha256="01akz72z6z5ybzika120v4v6ah13hfynh98rzbmqgbchijxbbkz6"; depends=[]; };
   mptools = derive2 { name="mptools"; version="1.0.1"; sha256="1g4fbfwxv9hir0jn22nh9854blgkh0b5jan3lv0888izj4isa1hc"; depends=[animation lattice latticeExtra raster rasterVis sp viridis zoo]; };
   mr_raps = derive2 { name="mr.raps"; version="0.2"; sha256="069vyvsdgc5m7n2fd0h7jrllz789zvsxka7h5wiy36dc7lagd6f8"; depends=[nortest]; };
-  mrMLM = derive2 { name="mrMLM"; version="3.0"; sha256="174d12dxrsndd8hkc4ivfa5wd7ixh3vkkvd1br5zm5rwxbq3c71l"; depends=[coin data_table doParallel foreach ggplot2 lars MASS ncvreg openxlsx qqman sampling stringr]; };
-  mrMLM_GUI = derive2 { name="mrMLM.GUI"; version="3.1"; sha256="17rqky58im1aax29fi3lc6i7kpy3n35ysdhjz9dgmykzhx41xmn2"; depends=[coin data_table doParallel foreach ggplot2 lars MASS mrMLM ncvreg openxlsx qqman sampling shiny shinyjs stringr]; };
+  mrMLM = derive2 { name="mrMLM"; version="3.1"; sha256="0mmnqgirbihq25fcy7bqs6qsw9dz6v1mzlm5ccs6pfpi852460c9"; depends=[bigmemory coin data_table doParallel foreach ggplot2 lars MASS ncvreg openxlsx qqman sampling stringr]; };
+  mrMLM_GUI = derive2 { name="mrMLM.GUI"; version="3.2"; sha256="0xhbkvq9bd0spnpd8acnmf3spsi1kz43wf2na5b122iv7ppwl3ix"; depends=[bigmemory coin data_table doParallel foreach ggplot2 lars MASS mrMLM ncvreg openxlsx qqman sampling shiny shinyjs stringr]; };
   mra = derive2 { name="mra"; version="2.16.11"; sha256="0268msdy4cs2ifpagmwiabi6aav54ckn214ai18aqv2h97hmixw0"; depends=[]; };
   mratios = derive2 { name="mratios"; version="1.4.0"; sha256="0pjcwqx3zykpwyykwgqziwignd41sjm2s1blyjwc1lhymis4ldzq"; depends=[mvtnorm]; };
   mrbsizeR = derive2 { name="mrbsizeR"; version="1.1.1"; sha256="0a69yyxxf4p84c2sx9kkaxgpfyck88cn0ajlnm64arrr9r99iiir"; depends=[fields maps Rcpp]; };
   mrds = derive2 { name="mrds"; version="2.2.0"; sha256="08m5a61rpbw5pv0v0yspihkzihcxazsh6w5kmfvg68s4akjwcnqi"; depends=[mgcv numDeriv optimx Rsolnp]; };
   mreg = derive2 { name="mreg"; version="1.1"; sha256="06la0yy2yys161jhlzlcm5lcv0664wm6sa8gjdnpd1s1nx52jkqf"; depends=[]; };
   mregions = derive2 { name="mregions"; version="0.1.6"; sha256="0ix77hqcllhcpldchlnvciiflm6ysylynnnqvczpf8vx7gwa3lrk"; depends=[data_table httr jsonlite rappdirs sp tibble wellknown xml2]; };
-  mrfDepth = derive2 { name="mrfDepth"; version="1.0.7"; sha256="1v0d1vm7jihg88xd4hwi5j940r5kh74c3nidh6hyvajqq97nidjq"; depends=[abind geometry ggplot2 matrixStats Rcpp RcppArmadillo RcppEigen reshape2]; };
+  mrfDepth = derive2 { name="mrfDepth"; version="1.0.10"; sha256="138nsjcxrs3ihzscaw0cv15hkr0xnrjnjlyyf9igpcpg76d5m1bb"; depends=[abind geometry ggplot2 matrixStats Rcpp RcppArmadillo RcppEigen reshape2]; };
   mrgsolve = derive2 { name="mrgsolve"; version="0.8.12"; sha256="04k7mj64gqwnvwsshfn4l3iiqfbsy92qil14ysq4ncjj2h40lgkj"; depends=[BH dplyr magrittr Rcpp RcppArmadillo rlang tibble]; };
   mri = derive2 { name="mri"; version="0.1.1"; sha256="07lqr9fv0nqd626jpqa6x1qxf85r1j4r5brv760dll1p2kl060gw"; depends=[]; };
   mritc = derive2 { name="mritc"; version="0.5-1"; sha256="12sfyw5b1lryczl92xvyvhl37qfx3ybg4y9awsl0b7f51zi0lzy3"; depends=[lattice misc3d oro_nifti]; };
@@ -8774,16 +9158,16 @@ in with self; {
   msap = derive2 { name="msap"; version="1.1.8"; sha256="0z5lm782jjb9w1h5vgz8bmxjdcrq9zb3xp1w5cb479jjc7krlgg3"; depends=[ade4 ape]; };
   mschart = derive2 { name="mschart"; version="0.2.3"; sha256="0lq2hhbwy3hycbvzhrhny7jk5cc4iq89a4mff5q2jjfff13vmm6g"; depends=[cellranger data_table htmltools officer R6 writexl xml2]; };
   mscstexta4r = derive2 { name="mscstexta4r"; version="0.1.2"; sha256="1hjcasmn33xav2mw085lcndv0432l6sz327aikf63491wj1sj7mw"; depends=[dplyr httr jsonlite pander stringi]; };
-  mscstts = derive2 { name="mscstts"; version="0.2.2"; sha256="1aa8pvg3immcrpr7b6q1lf4nm8gvq9316s28jvzpp2az5hvc1w00"; depends=[httr jsonlite]; };
+  mscstts = derive2 { name="mscstts"; version="0.3.0"; sha256="1fl3s5hhqkh7paaafm2dy4066g3p3rqcjmbxlsq4v60l3x448p5p"; depends=[httr jsonlite]; };
   mscsweblm4r = derive2 { name="mscsweblm4r"; version="0.1.2"; sha256="031s00wpr9zfjpii56m67q1phn05vqlhb8cfzhyf6fbrxvpb8k7n"; depends=[httr jsonlite pander]; };
   msda = derive2 { name="msda"; version="1.0.2"; sha256="05khpa5qasnngn6yvk87gv5262plqpw4knb6hzgy52w401k0y80r"; depends=[MASS Matrix]; };
   msde = derive2 { name="msde"; version="1.0.3"; sha256="18l5ca4s1ryyb9i0zsb03klm53f25klwyg171dqkn5z4bqwznp2m"; depends=[Rcpp RcppProgress]; };
   mseapca = derive2 { name="mseapca"; version="1.0"; sha256="115njdk8cv55zxd38hq9qaca686ykckni0f3xl8w3bn32gb5g9a7"; depends=[XML]; };
+  msgl = derive2 { name="msgl"; version="2.3.7"; sha256="18mcn2b7bk6z85yfmpgv8ics3fr2vbafpkn8fcnsc2amklpaplcd"; depends=[BH Matrix Rcpp RcppArmadillo RcppProgress sglOptim]; };
   msgpack = derive2 { name="msgpack"; version="1.0"; sha256="1j1nnca9nm3l1r4wjjlb15zr8p6zw1lcgyj4383ndy156bbh1f5a"; depends=[]; };
   msgpackR = derive2 { name="msgpackR"; version="1.1"; sha256="0a6vm4q1zfy8wlvhl9wfy09ig1iag9fvjasz5w9bll7idky4ldx5"; depends=[]; };
   msgps = derive2 { name="msgps"; version="1.3"; sha256="0nvxy9a41z5d111gqr1gh521imm795l1li70g1mzrag1gpg810c5"; depends=[]; };
-  msgtools = derive2 { name="msgtools"; version="0.2.7"; sha256="1lk4r9gdhlfarl5z6a48aih682q7dvwa6lf31119lljpa5gmi92y"; depends=[devtools digest hunspell poio tibble]; };
-  msigdbr = derive2 { name="msigdbr"; version="6.1.1"; sha256="0d8jxkfnlybs17s0qfxr1qcg6r4pp4q6c3srmm2r8zp7ln0qkj8j"; depends=[dplyr magrittr rlang tibble]; };
+  msigdbr = derive2 { name="msigdbr"; version="6.2.1"; sha256="1264j1hs74kq7hyh68vfynadfi6mdpq46qm1hnwzkzzhmbzpb9cg"; depends=[dplyr magrittr rlang tibble]; };
   msir = derive2 { name="msir"; version="1.3.1"; sha256="1ipzgdffsqly3dp91pw7yp3h5cwn08l9qsj7cdmrykd42jc98950"; depends=[mclust rgl]; };
   msltrend = derive2 { name="msltrend"; version="1.0"; sha256="1rwy77ijf3hzq2zp47cijwvqcq34rdlfxwhrd9l56bvmlmzr1dqx"; depends=[changepoint forecast plyr Rssa tseries zoo]; };
   msm = derive2 { name="msm"; version="1.6.6"; sha256="06m7fflb6lgjfnj9v4wjc63x2as8jvc24qmz6jvgm9fw7hnm24px"; depends=[expm mvtnorm survival]; };
@@ -8791,21 +9175,21 @@ in with self; {
   msme = derive2 { name="msme"; version="0.5.3"; sha256="0mq57zdas1s87nblnvbif9lisgahfhvmabglvp9imr1mvpwybpbh"; depends=[lattice MASS]; };
   msmtools = derive2 { name="msmtools"; version="1.3"; sha256="0p7xpj78cjc1s015ma7vc38kqiy6wvpyixrdinx4ngig1pqfrq4p"; depends=[data_table msm survival]; };
   msos = derive2 { name="msos"; version="1.1.0"; sha256="1dlqmjz5f8h71334kzdjbzvkn0dhysp7fb18g45qqs79cqpf1vzf"; depends=[mclust tree]; };
-  msr = derive2 { name="msr"; version="0.4.4"; sha256="1r7kzicyi380xylw4vl88918gqmvs875f3rssx57yg28swb93sv0"; depends=[colorspace e1071 glmnet RColorBrewer rgl]; };
   mssqlR = derive2 { name="mssqlR"; version="1.0.0"; sha256="0qdnm7cx9cg14vfcnkmcjqr1jpxsw8xlrbnxldvzz44mzv2n878l"; depends=[magrittr RODBC]; };
   mstR = derive2 { name="mstR"; version="1.2"; sha256="0v8cv9pswkvw0lva6jx5vavsb20dawgq83gn4rgydyhvigcl5szd"; depends=[]; };
   mstate = derive2 { name="mstate"; version="0.2.11"; sha256="13kw1n1p2f1f0k5hkcc4732wlhiy3csx8nx2ajrgw06svzksgh3y"; depends=[RColorBrewer survival]; };
   mstherm = derive2 { name="mstherm"; version="0.4.7"; sha256="04jrp0w17svwmrvx356jmh04npbwhk9nvfy3r39vqr82yrvn6jip"; depends=[doParallel foreach nls2 plotrix RColorBrewer]; };
+  mstrio = derive2 { name="mstrio"; version="10.11.1"; sha256="1k407b75kfvqlvlr9wcklf81b2cby3yi6jdi5ka661n5rybcs4nn"; depends=[httr jsonlite openssl]; };
   msu = derive2 { name="msu"; version="0.0.1"; sha256="1vhh9725dbywmzihnmsq1jircpn91r8227j2f76fvma9rwss90p7"; depends=[entropy]; };
   mtconnectR = derive2 { name="mtconnectR"; version="1.1.0"; sha256="068rp4n2afl9qgqrnp0a4lmnq7mq9wrc2yi361bfvib96gzg1fdw"; depends=[data_table dplyr dtw ggplot2 magrittr plyr proxy stringr tidyr XML]; };
   mthapower = derive2 { name="mthapower"; version="0.1.0"; sha256="17svh0q9a982a390fgwgvrc2kygxxgyacb3j6gcksbikjrvkcfpw"; depends=[]; };
   mtk = derive2 { name="mtk"; version="1.0"; sha256="0vq2xlxf86l92fl91qm8m4yfjyz1h8szmwxiics7sc9f0as0dkmy"; depends=[lhs rgl sensitivity stringr XML]; };
   mtsdi = derive2 { name="mtsdi"; version="0.3.5"; sha256="0j4hl690n8x7zfpygw5qv0m0jyl8dnz1d3r4314w06h7c578n2kp"; depends=[gam]; };
-  muHVT = derive2 { name="muHVT"; version="0.1.0"; sha256="1lkqas8ghnkgdnnhjmm1aivgabnqgpd3hfk8i3z7bajvi201qvx4"; depends=[conf_design deldir Hmisc MASS plyr sp splancs]; };
+  muHVT = derive2 { name="muHVT"; version="0.2.1"; sha256="0qndbg9m3267s8h7gphcm4rkchfgkyzd1301wr6iajv0shrc98rv"; depends=[conf_design deldir dplyr ggplot2 Hmisc magrittr MASS purrr sp splancs]; };
   muRL = derive2 { name="muRL"; version="0.1-11"; sha256="1pyspp1wpd80hcla1zwnl3misqggfk0ls54akwnx5aa617bibzz8"; depends=[maps stringr]; };
   muStat = derive2 { name="muStat"; version="1.7.0"; sha256="18727xj9i9hcnpdfnl1b9wd6cp7wl1g74byqpda2gsrcardl57wz"; depends=[]; };
   muckrock = derive2 { name="muckrock"; version="0.1.0"; sha256="16lm1iiaaws7clby7qgblqdiznw6abjjgvsxlfpza7l2xdvplxpg"; depends=[]; };
-  mudata2 = derive2 { name="mudata2"; version="1.0.2"; sha256="14jd0fwc11a5640p0vr5dgfw7f1h7473ybqhalg20n7519jybfcb"; depends=[dplyr ggplot2 jsonlite lubridate magrittr readr rlang stringr tibble tidyr tidyselect]; };
+  mudata2 = derive2 { name="mudata2"; version="1.0.3"; sha256="14nzi90gglq2dzwdq2bkpnwiz5fdfsf987ailii0c77xkd6j98jm"; depends=[dplyr ggplot2 jsonlite lubridate magrittr readr rlang stringr tibble tidyr tidyselect]; };
   mudfold = derive2 { name="mudfold"; version="1.1.0"; sha256="0mp25lad79dx2101srarx26my172jbkd6a0bzr87hjdgqr1pys5b"; depends=[ggplot2 gtools reshape2 yesno zoo]; };
   mueRelativeRisk = derive2 { name="mueRelativeRisk"; version="0.1.1"; sha256="16yclfmgxc32pv00vyb9fjdh4syax8ynizr8a29haiq22q5fqclh"; depends=[]; };
   muhaz = derive2 { name="muhaz"; version="1.2.6"; sha256="1b7gzygbb5qss0sf9kdwp7rnj8iz58yq9267n9ffqsl9gwiwa1b7"; depends=[survival]; };
@@ -8824,14 +9208,15 @@ in with self; {
   multiROC = derive2 { name="multiROC"; version="1.1.1"; sha256="15ydbxpkdyvsc55di13jvwh9p6dzxc1yj93w1cwsd8jp2y10wsd3"; depends=[boot magrittr zoo]; };
   multiband = derive2 { name="multiband"; version="0.1.0"; sha256="1f4gmy0yf9zid7kl05zncvvig6hs4nl1h9wkrkc24rxx9risw9k9"; depends=[]; };
   multibiplotGUI = derive2 { name="multibiplotGUI"; version="1.0"; sha256="0ig7r4p8mq594cjwclbqwjk8saqkvjqjbbnnxj1hc1sdj7qdlcpf"; depends=[cluster dendroextras Matrix rgl shapes tcltk2 tkrplot]; };
-  multicastR = derive2 { name="multicastR"; version="1.0.0"; sha256="0gs5pbnf9jr7l1hi6dq54a2isx43gdvbxx0p354r060gddj2xwqd"; depends=[data_table]; };
+  multicastR = derive2 { name="multicastR"; version="1.0.1"; sha256="1sf5mn5hgz34ildga00462j92cr6v19132ns0sf9klwcrir8fqfb"; depends=[data_table stringi xml2]; };
   multichull = derive2 { name="multichull"; version="1.0.0"; sha256="1gc7kxxlbanc6rmmbf6h85jf7kj0a78h23m5vwwqqliv018qsv2n"; depends=[igraph plotly shiny shinythemes]; };
   multicmp = derive2 { name="multicmp"; version="1.1"; sha256="0mz7ksc5h6dy95l3kbsamm191372blhlrj573krc57bj93lmp1a5"; depends=[numDeriv]; };
+  multicolor = derive2 { name="multicolor"; version="0.1.1"; sha256="1n7mxjkpd54y41lr3kwn3gwlka9p812jgazhlm9m6s9bc34sw3y9"; depends=[cowsay crayon dplyr glue magrittr purrr stringr tibble tidyr]; };
   multicon = derive2 { name="multicon"; version="1.6"; sha256="16glkgnm4vlpxkhf1xw1gl1q10yavx9479i21v29lldag35z8pqx"; depends=[abind foreach mvtnorm psych sciplot]; };
   multicool = derive2 { name="multicool"; version="0.1-10"; sha256="1ybg9piya9psqg42w9i3zsnavbxhkfklfwl7cb420i5nkq6wpc2v"; depends=[Rcpp]; };
-  multifluo = derive2 { name="multifluo"; version="1.0"; sha256="1blmr2cdbdwfyivvla0nmv2n44m168f3d11g5i7vydh8fl17l8vr"; depends=[ellipse imager]; };
+  multifluo = derive2 { name="multifluo"; version="1.1"; sha256="1hnh1gj6lfnh2fn0v064bszydgsr6p9f7p8yxyw5rdxfrxymiw09"; depends=[agricolae ellipse imager]; };
   multifwf = derive2 { name="multifwf"; version="0.2.2"; sha256="1l6z3pzz6g6w1spp1f918jh6w0jm93qyc882rj8jhn1198d2s8nd"; depends=[]; };
-  multigraph = derive2 { name="multigraph"; version="0.75"; sha256="0y4ibyy7v5hgxilrw5fxhj12597yl9q8zla5xvvhn9g7ir6xvmxd"; depends=[multiplex]; };
+  multigraph = derive2 { name="multigraph"; version="0.91"; sha256="1ind8zqqcy4k97sdimn7bn85nbqwda92z0dp80kilcsvlhf47y35"; depends=[multiplex]; };
   multigroup = derive2 { name="multigroup"; version="0.4.4"; sha256="1r79zapziz3jkd654bwsc5g0rphrk9hkp1fpik8jvjsa1cix40mq"; depends=[MASS]; };
   multilaterals = derive2 { name="multilaterals"; version="1.0"; sha256="11zfdhn6qzqz0n31g23bn40wnfzkjndb753iiqvihirphzb74v5v"; depends=[ape igraph]; };
   multilevel = derive2 { name="multilevel"; version="2.6"; sha256="19zrvpq23dn69d7kai1rgw5b8ibmgybnbg6isliq0n8bv9jvrzia"; depends=[MASS nlme]; };
@@ -8840,11 +9225,11 @@ in with self; {
   multimode = derive2 { name="multimode"; version="1.3"; sha256="130sh1r92z7415j4liz7ka1lpq0b5dxwqdh8s2lnd0wyjz8ysh3k"; depends=[diptest ks rootSolve]; };
   multinbmod = derive2 { name="multinbmod"; version="1.0"; sha256="1c4jyzlcjkqdafj9b6hrqp6zs33q6qnp3wb3d7ldlij7ns9fhg71"; depends=[]; };
   multinet = derive2 { name="multinet"; version="1.1.5"; sha256="15zwwksyfacvlkwrbslr2rz108xb1qmq37r6zxk022hi9gkh4mnz"; depends=[igraph Rcpp]; };
-  multinets = derive2 { name="multinets"; version="0.2.0"; sha256="05m0xin8wxshmwb3b9cgsvi8037wvmirbyyim1xxx2ppfwrdr2a6"; depends=[igraph Rcpp]; };
+  multinets = derive2 { name="multinets"; version="0.2.1"; sha256="00h1nqi49mix5rxp39i46pimmr3rl0c2869g7ss8cy0kl8hl41hz"; depends=[igraph igraphdata Rcpp]; };
   multinomRob = derive2 { name="multinomRob"; version="1.8-6.1"; sha256="1fdjfk77a79fy7jczhpd2jlbyj6dyscl1w95g64jwxiq4hsix9s6"; depends=[MASS mvtnorm rgenoud]; };
-  multipanelfigure = derive2 { name="multipanelfigure"; version="1.0.0"; sha256="08vwz3d3gwybb1dzxhmzzik636k7y6dvrwkxpdsij7zw9p5gbbgs"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types caTools ggplot2 gridGraphics gtable jpeg magrittr png rsvg tiff]; };
+  multipanelfigure = derive2 { name="multipanelfigure"; version="2.0.0"; sha256="0p9dipwkqfrfdd50s002byhwrdbzwp7nj1bswf8anpzvqnd8iz1a"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_types ggplot2 gridGraphics gtable magick magrittr stringi]; };
   multipleNCC = derive2 { name="multipleNCC"; version="1.2-1"; sha256="080wpyifpw41p6jip2ia7439jdhzyb7lbhs2qzzg0hn6c0qq7mrr"; depends=[mgcv survival]; };
-  multiplex = derive2 { name="multiplex"; version="2.8"; sha256="01l3kmvsrrq0c98dv5m25yjjcbc99in6dv9k5h54cyjsw4jsjhns"; depends=[]; };
+  multiplex = derive2 { name="multiplex"; version="2.9"; sha256="1na0w4kzaswgzyw4wq8qmihasgbvbl426a2cx3y672l80rgjhhdh"; depends=[]; };
   multipol = derive2 { name="multipol"; version="1.0-7"; sha256="1rkrg3kayxa05jayg8bk1mm3hcvi76570wqfja5953hd9j4krgha"; depends=[abind]; };
   multirich = derive2 { name="multirich"; version="2.1.1"; sha256="04jr5jvds70j2psyxz12d2my61jcj5hvdyv10pvar2rpqaw0yxyh"; depends=[]; };
   multiselect = derive2 { name="multiselect"; version="0.1.0"; sha256="1cda38zq7c1r56wdfpr5dg0jfw4kzi9p7jq59qm04j461j9ag3q6"; depends=[Hmisc]; };
@@ -8852,19 +9237,19 @@ in with self; {
   multisom = derive2 { name="multisom"; version="1.3"; sha256="0msxmrj4iawxg4vf4r7kj26zalxz4di2w4nxgxiakiig4g4ggy9z"; depends=[class kohonen]; };
   multispatialCCM = derive2 { name="multispatialCCM"; version="1.0"; sha256="1fzd91w10iln8qb81z240lq3fi4gq22l4rh9npkav6fiq6g6rlp8"; depends=[]; };
   multistate = derive2 { name="multistate"; version="0.2"; sha256="0jdgyzc99k4py39g98c4dlcdl918568ihcyhb7csxbsn1zn1qm9l"; depends=[date relsurv statmod survival]; };
-  multistateutils = derive2 { name="multistateutils"; version="1.1.0"; sha256="1fpfmqwspvrhq4n02ha5vpaybnhg8ylqmixm2r2xrk2x3kq7733r"; depends=[data_table dplyr magrittr networkD3 Rcpp survival tidyr]; };
+  multistateutils = derive2 { name="multistateutils"; version="1.2.0"; sha256="0dngc2vyqgcck1iaf9r116r6xp65axivqq8hl6sa7ib6rgwknhkw"; depends=[data_table dplyr magrittr networkD3 Rcpp survival tidyr]; };
   multitaper = derive2 { name="multitaper"; version="1.0-14"; sha256="04wd9bbhyx7697pfy0fpj02v1csr48hkpqj62h9p8a6w84ji4k68"; depends=[]; };
-  multivariance = derive2 { name="multivariance"; version="1.1.0"; sha256="1yl1qfckpf98j4ca3wv8zw8vd79isaqvq7qkakyhxy0ljx20jmlk"; depends=[abind igraph]; };
+  multivariance = derive2 { name="multivariance"; version="1.2.0"; sha256="07cm2qji04lmxkm4sqigln7rihanaww98d4k8p1rn6d62mcxyizv"; depends=[abind igraph Rcpp]; };
   multivator = derive2 { name="multivator"; version="1.1-9"; sha256="0vbqvhmym46zjr1h4s53sjrddfjpv8wi0sq4lrh2rmqarq068416"; depends=[emulator mvtnorm]; };
   multiwave = derive2 { name="multiwave"; version="1.2"; sha256="1bw071izjxrsk5gx8s49nrlryabpgpg7k2z1ghmk8p6i9m5apnl8"; depends=[]; };
   multiway = derive2 { name="multiway"; version="1.0-5"; sha256="0ni38h16nddwib9nvcby59rsn9913qwhrlkpdkz99fwz8cnl8rw2"; depends=[CMLS]; };
   multiwayvcov = derive2 { name="multiwayvcov"; version="1.2.3"; sha256="1znsmca16jac8s5z0j64cck27pvf88anm1mfblabqchqqcz1ykfc"; depends=[boot sandwich]; };
   multxpert = derive2 { name="multxpert"; version="0.1"; sha256="03mvf4m0kabm22vy4zkj1cfh884larpj8cbgg3p9l3pag20snf1l"; depends=[mvtnorm]; };
   muma = derive2 { name="muma"; version="1.4"; sha256="0midx3wzyvcz8rk9kvsfll3xg41pkz40si4jw2ps54ykkf9rkm99"; depends=[bitops car caTools gplots gtools mvtnorm pcaPP pdist pls robustbase rrcov]; };
-  mumm = derive2 { name="mumm"; version="0.2.0"; sha256="1dizjqi29cw2bpsr0i3a27mys2rs90yhbg1lc7a2nkg7lwqgb993"; depends=[lme4 Matrix Rcpp RcppEigen stringr TMB]; };
+  mumm = derive2 { name="mumm"; version="0.2.1"; sha256="1wjg2pqn2wb9hk9mqgpi3k26qwjnkmp4apx09lxcwrz35bbwhfzv"; depends=[lme4 Matrix Rcpp RcppEigen stringr TMB]; };
   munfold = derive2 { name="munfold"; version="0.3.5"; sha256="17zizx9r0f8dxb7dkgn1nn0fp7ydy6r155p1zfz0v93jc26lc1hb"; depends=[MASS memisc]; };
   munsell = derive2 { name="munsell"; version="0.5.0"; sha256="16g1fzisbpqb15yh3pqf3iia4csppva5dnv1z88x9dg263xskwyh"; depends=[colorspace]; };
-  munsellinterpol = derive2 { name="munsellinterpol"; version="2.0.1"; sha256="1pyqsgx2fhrh264yvg6ybkr4skksn1hlanh8950df1f77h70ji6i"; depends=[geometry rootSolve spacesRGB]; };
+  munsellinterpol = derive2 { name="munsellinterpol"; version="2.1-3"; sha256="0y0ab133sh4c4avdgwjja14z290gczkzv3xlgr0lwdwhfbb60cc2"; depends=[geometry rootSolve spacesRGB spacesXYZ]; };
   murphydiagram = derive2 { name="murphydiagram"; version="0.11"; sha256="0wax9gjhzz8nphzwijqzllz4y25jksf1vqfcbnfb7zafsfv40rib"; depends=[]; };
   musicNMR = derive2 { name="musicNMR"; version="0.0.2"; sha256="09xxc78ajk428yc3617jfxqp5fy89nfc24f1rig6cw28fflwqj0k"; depends=[seewave]; };
   musica = derive2 { name="musica"; version="0.1.3"; sha256="0cfzfar706l0xdb0n11m18mayj5rrplvf4qry36vgxsiaxcba90r"; depends=[data_table lubridate magrittr qmap]; };
@@ -8872,9 +9257,9 @@ in with self; {
   mutSignatures = derive2 { name="mutSignatures"; version="1.2"; sha256="1kbp221lm43a5wiw754yjkd3qidmca20m0i8jlxsqk8ijbp40ky2"; depends=[cluster doParallel foreach ggplot2 pracma proxy]; };
   mutoss = derive2 { name="mutoss"; version="0.1-12"; sha256="1yk7p7pb2xm38d3j19ysgwmix48lvimbhkhjjwk5jmr1a0ysx298"; depends=[multcomp multtest mvtnorm plotrix]; };
   mutossGUI = derive2 { name="mutossGUI"; version="0.1-11"; sha256="08pcca9gzns83az6jbjzv4xhm1wgmchhzz4f54x1aq0nmvsz3qq1"; depends=[CommonJavaJars JavaGD JGR multcomp mutoss plotrix rJava]; };
-  mvLSW = derive2 { name="mvLSW"; version="1.2.1"; sha256="012p828pyzz6xnv2akax5hx79v522dg4a2gqrjss526qylpg5j9l"; depends=[fields wavethresh xts zoo]; };
+  mvLSW = derive2 { name="mvLSW"; version="1.2.2"; sha256="19bz1hryw9jhw2y3cnx4bqykdqpfgdlnmkx7ka8i96yb5xg4791q"; depends=[fields wavethresh xts zoo]; };
   mvMISE = derive2 { name="mvMISE"; version="1.0"; sha256="0lnc5g3ksl5cvwylh8p8baxyvq3z32a2i337q7lhg00j031ccy5c"; depends=[lme4 MASS]; };
-  mvMORPH = derive2 { name="mvMORPH"; version="1.0.9"; sha256="09368vgyb1s18awfr07hs1s40n2h15hy08fmir3ayhdfrdain4k6"; depends=[ape corpcor phytools spam subplex]; };
+  mvMORPH = derive2 { name="mvMORPH"; version="1.1.0"; sha256="0v63wi4la5kw59xdl1bmsc8hh8gfpm89s79dzrkbdkmakm740vvx"; depends=[ape corpcor glassoFast phytools spam subplex]; };
   mvMonitoring = derive2 { name="mvMonitoring"; version="0.1.0"; sha256="03nvq8nmrmrpzyxlsqzww5ghk640115l1jgmgwfahhjxkdpkzfxx"; depends=[BMS dplyr lazyeval plyr rlang robustbase xts zoo]; };
   mvPot = derive2 { name="mvPot"; version="0.1.4"; sha256="04l9dn8amwp366b6lic5fkl4kck0x2m3xcsqz6as4c3h772nhq1w"; depends=[evd gmp MASS numbers]; };
   mvProbit = derive2 { name="mvProbit"; version="0.1-8"; sha256="07dizclqjlwj29yb3xwjihjh8kmn6jiq5cpf8rcirylzykfdv3wk"; depends=[abind bayesm maxLik miscTools mvtnorm]; };
@@ -8885,10 +9270,10 @@ in with self; {
   mvbutils = derive2 { name="mvbutils"; version="2.7.4.1"; sha256="1vs97yia78xh35sdfv5pj3ddqmy83qgamvyyh9gjg0vdznqhffzg"; depends=[]; };
   mvc = derive2 { name="mvc"; version="1.3"; sha256="0kmh6vp7c2y9jf71f4a29b0fxcl0h7m4p8wig4dk3fi7alhjf7ym"; depends=[rattle]; };
   mvcluster = derive2 { name="mvcluster"; version="1.0"; sha256="0yfl31scdgsiljvpv1yxc5bwwzr6kbhpjwqh2kql7xf0m0hc1pr4"; depends=[Rcpp RcppArmadillo]; };
-  mvctm = derive2 { name="mvctm"; version="1.1"; sha256="00lrnqnzpnvrl84b41ai33iwpyb4qzpjyqrw1d18hj6szybdfhsv"; depends=[Formula MNM nlme quantreg Rfit SpatialNP]; };
+  mvctm = derive2 { name="mvctm"; version="1.2"; sha256="0810bmk748cvbls4djspqvkk65j605djqicqg4rkwy2a799l3rgc"; depends=[Formula MNM nlme quantreg Rfit SpatialNP]; };
   mvcwt = derive2 { name="mvcwt"; version="1.3"; sha256="0fqdyypmszm00rpl04z8kiiw6jd416a0b2rap3dqq3kchnz8h4s2"; depends=[foreach RColorBrewer]; };
   mvdalab = derive2 { name="mvdalab"; version="1.4"; sha256="18wchy517qd45w5y0sr8lcafb7kmscy0q9vsryk9if6x2jq22lqz"; depends=[car dummies ggplot2 MASS moments penalized plyr reshape2 sn]; };
-  mvglmmRank = derive2 { name="mvglmmRank"; version="1.2-1"; sha256="1gyc1xjyapadrv43kd4kngld37q8drhx4qfcimsvf7jdp33y6g5d"; depends=[MASS Matrix numDeriv]; };
+  mvglmmRank = derive2 { name="mvglmmRank"; version="1.2-2"; sha256="00zxqby8syb959fqgw9i7b0yamgjwddq32jlin6qmnzys5bg1556"; depends=[MASS Matrix numDeriv]; };
   mvinfluence = derive2 { name="mvinfluence"; version="0.8-3"; sha256="0nygsldkm61ny5ljcc1r667rywj239j4x59ssi81cb2005kkjgm5"; depends=[car heplots]; };
   mvmesh = derive2 { name="mvmesh"; version="1.5"; sha256="0my43559jh8ln1fx5rh5vw24vr6kxpd2h5scylfxfv2qfk794l0b"; depends=[abind geometry rcdd rgl SimplicialCubature]; };
   mvmeta = derive2 { name="mvmeta"; version="0.4.11"; sha256="1h1393s7xdi4sv461srsard6w961mcxxmxq9mkmfsgw5hdmkwkr2"; depends=[]; };
@@ -8899,12 +9284,12 @@ in with self; {
   mvnmle = derive2 { name="mvnmle"; version="0.1-11.1"; sha256="131k2bnn6194y3f35r9cgys8g1z2y52123ng8iijpkpbfd147y92"; depends=[]; };
   mvnormtest = derive2 { name="mvnormtest"; version="0.1-9"; sha256="1iaxjwp7bgxhaa4xqvgqb61316mq2fb0452d0pabhmbxkvmvdnj6"; depends=[]; };
   mvnpermute = derive2 { name="mvnpermute"; version="1.0.0"; sha256="0mbyj5i5vysrnl3pgypl0cjf3sylsvzfl1pcxkn0q16560vqh2ba"; depends=[]; };
-  mvord = derive2 { name="mvord"; version="0.3.1"; sha256="1i1jhvs9h5s07zqa84i1lm3gx70v32agsiymc0v1msqai12plknb"; depends=[MASS Matrix mnormt numDeriv optimx pbivnorm]; };
+  mvord = derive2 { name="mvord"; version="0.3.2"; sha256="0gpm7biwmvimsv7zcc8h8gmzl6f1n52gx68cmz2ppz0d1fv0w8sb"; depends=[BB dfoptim MASS Matrix minqa mnormt numDeriv optimx pbivnorm ucminf]; };
   mvoutlier = derive2 { name="mvoutlier"; version="2.0.9"; sha256="1d562h3xicq962h27fi95qhrz9vkwxk0p8axhps1cy4b49w4bygi"; depends=[robCompositions robustbase sgeostat]; };
   mvprpb = derive2 { name="mvprpb"; version="1.0.4"; sha256="1kcjynz9s7vrvcgjb9sbqv7g50yiymbpkpg6ci34wznd33f7nrxm"; depends=[]; };
   mvrtn = derive2 { name="mvrtn"; version="1.0"; sha256="0k0k76wk5zq0cjydncsrb60rdhmb58mlf7zhclhaqmli1cy697k8"; depends=[]; };
   mvsf = derive2 { name="mvsf"; version="1.0"; sha256="1krvsxvj38c5ndvnsd1m18fkqld748kn5j2jbgdr3ca9m3i5nlwf"; depends=[mvnormtest nortest]; };
-  mvst = derive2 { name="mvst"; version="1.0.1"; sha256="0sv8pd1524pr3xpxplq468dxfd0wipdr41awqwvcljpw5wgl34qa"; depends=[MCMCpack mnormt mvtnorm]; };
+  mvst = derive2 { name="mvst"; version="1.1.0"; sha256="03q0kdychsmn4wcn50b6dqhxn4f2mjvrr5rac942xdv75w8qklc9"; depends=[MCMCpack mnormt mvtnorm]; };
   mvtboost = derive2 { name="mvtboost"; version="0.5.0"; sha256="06zgx1c2470bh3x6s2awzkxbyij6bvzv23xbvamg77v5pz5bjj6h"; depends=[gbm RColorBrewer]; };
   mvtmeta = derive2 { name="mvtmeta"; version="1.0"; sha256="0g0d4lrz854wkd0dz5aiad54i46aqkfhsq6cpbsfv0w5l2kwiqqz"; depends=[gtools]; };
   mvtnorm = derive2 { name="mvtnorm"; version="1.0-8"; sha256="0la42lylb7cjrcrc285bn69bz9kyg556xw317iz139dp1yswl410"; depends=[]; };
@@ -8917,28 +9302,29 @@ in with self; {
   mycor = derive2 { name="mycor"; version="0.1.1"; sha256="00hqmvga22bv43833s974s7ky7lbry3r2bb5kza7kvkn1p6773rg"; depends=[lattice]; };
   myepisodes = derive2 { name="myepisodes"; version="1.1.1"; sha256="0xk9bwgpl630nhc8qa2pc0rwqbqk3haxnp78gfxq6sn6z7i44k1p"; depends=[XML]; };
   mztwinreg = derive2 { name="mztwinreg"; version="1.0-1"; sha256="1rg6ikaqdrc7q44s3r3km8h45prnvcpzpxd7nxbmh209iz9j19ai"; depends=[mclogit rms]; };
-  n1qn1 = derive2 { name="n1qn1"; version="6.0.0-1"; sha256="01bci81lhanxpfl454gl09krgb4229dnq9f34bngwm8ygvdadfgy"; depends=[Rcpp RcppArmadillo]; };
+  n1qn1 = derive2 { name="n1qn1"; version="6.0.1-3"; sha256="1k13x4h2rbcra3b8873ymvn4bgj6psaw05ba0hac0spymbp01fzi"; depends=[Rcpp RcppArmadillo]; };
   nCDunnett = derive2 { name="nCDunnett"; version="1.1.0"; sha256="0q2db1pixqr0wbx4bd05c98i1p0vgaqsfa1iwjxr08c62a5xhkks"; depends=[]; };
-  nCal = derive2 { name="nCal"; version="2017.12-3"; sha256="1k03zrf67il7miap81r2fdnsi15i98wmwc3a8zxn54qfr2w9pcy6"; depends=[drc gdata gWidgets kyotil]; };
+  nCal = derive2 { name="nCal"; version="2018.8-20"; sha256="1idgpzivw5wa423z86rf60ri50cyh8p38p4r493i9b2m9qzzqf1x"; depends=[drc gdata gWidgets kyotil]; };
   nFCA = derive2 { name="nFCA"; version="0.3"; sha256="1jyyzagmppm3i7vh3ia4ic0zql1w04f66z81v0zpdihd4cbl5ra7"; depends=[]; };
   nFactors = derive2 { name="nFactors"; version="2.3.3"; sha256="016d76yfxz7gx7zz5dgwjmj2c5m6kxdmqj0lln5w6d70r9g1kxg7"; depends=[boot lattice MASS psych]; };
   nLTT = derive2 { name="nLTT"; version="1.4"; sha256="0718r93xw8hw639xpa5w6lax7agr2k3avqx9dcdybqdp19x9qia0"; depends=[ape coda deSolve testit]; };
   nVennR = derive2 { name="nVennR"; version="0.2.1"; sha256="11qkwd8laf67iqyzx3ia424vykvsvy0k9d7labdgqfx2ihd95hh2"; depends=[Rcpp]; };
   na_tools = derive2 { name="na.tools"; version="0.3.1"; sha256="1lbzsckfg297n85kzbin65x1l6qgg9l50hd3xi2gflxc7n2xb8bw"; depends=[]; };
-  nabor = derive2 { name="nabor"; version="0.4.7"; sha256="16dxnvq6yxlrignzvxjdwzwm32fn2a8bsjqjsg5qz94ir7g3pzm6"; depends=[BH Rcpp RcppEigen]; };
+  nabor = derive2 { name="nabor"; version="0.5.0"; sha256="1nj39cdfwrmhgsi3cq8imxv3n6xzc1v6dzdb2cf2hybjk368v4s7"; depends=[BH Rcpp RcppEigen]; };
   nadiv = derive2 { name="nadiv"; version="2.16.0.0"; sha256="0pfg9hbhcjgbfmakl1jqqaf9i07i5z5jk7sh2x7x7p4354z30z9y"; depends=[Matrix]; };
   naivebayes = derive2 { name="naivebayes"; version="0.9.2"; sha256="0xmgcvvhfh7v8afi8fywaldawbx3s5hwgpvyyp2c9m6nrhw1kknl"; depends=[]; };
   naivereg = derive2 { name="naivereg"; version="1.0.1"; sha256="0wvyv54q3r4jz03jdbsmnxsinzpqcac6xjvzcrjjdzbkqfxicxal"; depends=[gmm grpreg]; };
   namedCapture = derive2 { name="namedCapture"; version="2017.06.01"; sha256="14zimn3wbavbkwra8vfmqdm1q5bmlmsbg0b29cjly5dd4zlfzzb0"; depends=[]; };
   namespace = derive2 { name="namespace"; version="0.9.1"; sha256="1bsx5q19l7m3q2qys87izvq06zgb22b7hqblx0spkvzgiiwlq236"; depends=[]; };
   nandb = derive2 { name="nandb"; version="1.0.1"; sha256="1hg6j8sv2fhaqwp2hzkgdwfymr2f3j6506vz2kshj3h3387nfhm4"; depends=[autothresholdr checkmate detrendr dplyr filesstrings ijtiff magrittr MASS purrr Rcpp rlang stringr]; };
-  naniar = derive2 { name="naniar"; version="0.3.1"; sha256="0mscn99x3wwf5jdi6khlf6n9w737icf07vhz6yqsqpkzsd8z825w"; depends=[dplyr forcats ggplot2 glue magrittr purrr rlang tibble tidyr viridis visdat]; };
+  naniar = derive2 { name="naniar"; version="0.4.0.0"; sha256="0b8hi00x6anlkkpw7mr6hiizpw6ljv3m5h9w6c4rj05psv5nm3w2"; depends=[dplyr forcats ggplot2 glue magrittr purrr rlang tibble tidyr UpSetR viridis visdat]; };
   nanop = derive2 { name="nanop"; version="2.0-6"; sha256="007gdc93pk0vpfmsw7zgfma2k1045n2cxwwsyy276smy0ys9fdhp"; depends=[distrEx rgl]; };
-  nanotime = derive2 { name="nanotime"; version="0.2.1"; sha256="0zb6gwxzmcmk2v1020xc2l3bzrz8kz1b445x3ci6s7pgwh0njxra"; depends=[bit64 RcppCCTZ zoo]; };
+  nanotime = derive2 { name="nanotime"; version="0.2.3"; sha256="0pcz49rm9l97xj5s7pvff2mf9373xhj0wr8bc57ibbi38adgcvbx"; depends=[bit64 RcppCCTZ zoo]; };
   naptime = derive2 { name="naptime"; version="1.3.0"; sha256="1cadfv5sdsmz61kf96hf2gbnghf24q40g5c3h9b8prvkxslap691"; depends=[lubridate]; };
   nardl = derive2 { name="nardl"; version="0.1.5"; sha256="1xi1fkwgkfc1b8qsgi4lrjx419778qk0vxzl23azcziwa6fha5p8"; depends=[Formula gtools strucchange tseries]; };
-  narray = derive2 { name="narray"; version="0.4.0"; sha256="0cr0y8mqwprxk0bv9160xvqxgvqkihn3avzsjm6ccivvb8zlkqxv"; depends=[reshape2 stringr]; };
+  narray = derive2 { name="narray"; version="0.4.1"; sha256="09n50shk2gy1m85kmvq8g3zh2nrikpllv8gph9x2id1p62rbqf1y"; depends=[progress stringr]; };
   nasadata = derive2 { name="nasadata"; version="0.9.0"; sha256="0y88qdy8c1y0prsajxic5vdqfixv9knjsbhw3vbfac8wv3a69bjl"; depends=[dplyr jsonlite plyr png]; };
+  nasapower = derive2 { name="nasapower"; version="1.0.2"; sha256="1p99yl47l1dvyhkl38alzszbk5vs28a2zh3miqxsqmsqzmmjbsd3"; depends=[APSIM crul curl jsonlite lubridate readr tibble]; };
   nasaweather = derive2 { name="nasaweather"; version="0.1"; sha256="05pqrsf2vmkzc7l4jvvqbi8wf9f46854y73q2gilag62s85vm9xb"; depends=[]; };
   nat = derive2 { name="nat"; version="1.8.11"; sha256="1s5hbi1b20jq0qv4px0zrwsivhi2mdlqbwx4lv55mdhj447rxk1x"; depends=[digest filehash igraph nabor nat_utils plyr rgl yaml]; };
   nat_nblast = derive2 { name="nat.nblast"; version="1.6.2"; sha256="0b2gzyzszj2v5girxyv31nvds0837lzvim7x7bs9h897yrxs57k8"; depends=[dendroextras nabor nat plyr rgl spam]; };
@@ -8947,25 +9333,26 @@ in with self; {
   natserv = derive2 { name="natserv"; version="0.1.4"; sha256="0qwf7lapx5gchk8xmdnmxr10j5dnkp52mqnh1ja216z7l841cl07"; depends=[crul data_table tibble xml2]; };
   natural = derive2 { name="natural"; version="0.9.0"; sha256="0zxwbf3gg2h0bhl2w0md3rd162vlsgg0dv3187hc0ax7333cc4cx"; depends=[glmnet Matrix]; };
   naturalsort = derive2 { name="naturalsort"; version="0.1.3"; sha256="0mz801y9mzld9ypp3xmsjw2d8l9q97sdnv09wrci9xi3yg2sjf6d"; depends=[]; };
-  nbc4va = derive2 { name="nbc4va"; version="1.0"; sha256="0y1qpkzjr327qyvmqf129m400rvn6gwk72ccnly6cqq53icrarn4"; depends=[]; };
+  nbc4va = derive2 { name="nbc4va"; version="1.1"; sha256="025p9h1ghrsq4h439gx25ffpyvh2kp1i51hm7kbzx8nmh4ka8aff"; depends=[]; };
   nbconvertR = derive2 { name="nbconvertR"; version="1.0.2"; sha256="1dc9jxfibvb27qwiykj93322nb1ahwrg69zqcc0p9xp0rpsim02w"; depends=[]; };
   nbpMatching = derive2 { name="nbpMatching"; version="1.5.1"; sha256="0f90k9vq05gkc0sgywb98frig63df0ih4z41dq7m2inx1zk5rqns"; depends=[Hmisc MASS]; };
-  ncar = derive2 { name="ncar"; version="0.4.0"; sha256="0in8nvkxgd6p5xdwyqnqlnhskysbja9lw1pw3hl8zfn1qhcgqxl9"; depends=[NonCompart rtf]; };
+  ncappc = derive2 { name="ncappc"; version="0.3.0"; sha256="0bf00iskrd3x43839bwn957mi3qvm2dhcmqa7hl1ib0gp2r1cnzx"; depends=[bookdown Cairo dplyr ggplot2 gridExtra gtable knitr lazyeval magrittr PopED purrr readr reshape2 rlang rmarkdown scales tibble tidyr xtable]; };
+  ncar = derive2 { name="ncar"; version="0.4.1"; sha256="0nqc3ari3ghxygqvb3vfzdqclh77mbhyh3pki86wwx6ym62b1bx0"; depends=[NonCompart rtf]; };
   ncbit = derive2 { name="ncbit"; version="2013.03.29"; sha256="0f07h8v68119rjvgm84b75j0j7dvcrl6dq62vp41adlm2hgjg024"; depends=[]; };
   ncdf_tools = derive2 { name="ncdf.tools"; version="0.7.1.295"; sha256="1jgxivmg2gzvkn09n13i5xr1v0xcyp5ckhwxz6g5kdh9z2dkjhc2"; depends=[abind chron JBTools plotrix raster RColorBrewer RNetCDF]; };
   ncdf4 = derive2 { name="ncdf4"; version="1.16"; sha256="0lwjjis0b83c4l3xvqai4ckzrskd6mychck1iwxcxgjvh0d77mgd"; depends=[]; };
   ncdf4_helpers = derive2 { name="ncdf4.helpers"; version="0.3-3"; sha256="051akd7r6zx805a0xwcs95q5sd8alag0f1gzqjk3n188q8r3ji5j"; depends=[abind ncdf4 PCICt]; };
   ncdump = derive2 { name="ncdump"; version="0.0.3"; sha256="09g98mzpky32z41jf23ahzhyv34l34y1gqq99j2hl4pqlvvhxs9i"; depends=[dplyr ncdf4]; };
-  ncf = derive2 { name="ncf"; version="1.2-5"; sha256="0w7zaiiy1ddahq8nw3q23k6qh4yw2d1iw4wybwiii3spn8hab57s"; depends=[]; };
+  ncf = derive2 { name="ncf"; version="1.2-6"; sha256="1ac1jc7f6ywngbf9h9vb4rfm10cakljn1i48ga815h3m71cagmak"; depends=[]; };
   ncg = derive2 { name="ncg"; version="0.1.1"; sha256="1jzkzp61cc5jxmdnl867lcrjjm7y2iw9imzprbd098p1j3w8fvj7"; depends=[]; };
-  ncmeta = derive2 { name="ncmeta"; version="0.0.2"; sha256="1qr0zfyy8g3zrmvg6i6b7sfvl3lavr391rqgf6pqhslg7i9cgpiz"; depends=[dplyr rlang RNetCDF tibble]; };
-  ncodeR = derive2 { name="ncodeR"; version="0.1.0"; sha256="0bjjz9x6cfgkgc6z32pkl5b6khhdl5yjn9mi2b3n184kvpszjygj"; depends=[cli R6 rhoR]; };
+  ncmeta = derive2 { name="ncmeta"; version="0.0.3"; sha256="14gbl7ln5ylplj12rsksyw0wlimh1gjnjm1c26mc8yg2h1cv3667"; depends=[dplyr rlang RNetCDF tibble]; };
+  ncodeR = derive2 { name="ncodeR"; version="0.1.2"; sha256="1wa87shdcngf6x22gcysylkxvj8h2k6f88r867wiagz0c01mq9bf"; depends=[cli R6 rhoR]; };
   ncpen = derive2 { name="ncpen"; version="0.2.0"; sha256="1wrpscd9n7z9lz7537qyy4rn4pjznlb8zwb79kkzmnfvyj21fi1r"; depends=[Rcpp RcppArmadillo]; };
-  ncvreg = derive2 { name="ncvreg"; version="3.10-0"; sha256="0q9rk1mz2rm1h99m093kz7a2p6fl3pj4nqzblp3154q8i1kva7za"; depends=[]; };
-  ndjson = derive2 { name="ndjson"; version="0.6.0"; sha256="0w7a587q45hkzmjhzlyrhk0hw4c8avkfzf4ai0wib5qk3al8gk6n"; depends=[data_table dplyr dtplyr Rcpp]; };
-  ndl = derive2 { name="ndl"; version="0.2.17"; sha256="08h01rw7gsa31zp91q2rsw1ba9yf0fyhz3w8s9xq5788qwc80280"; depends=[Hmisc MASS Rcpp]; };
-  ndtv = derive2 { name="ndtv"; version="0.12.2"; sha256="0jyzdi19n2h6kf8kbibg1lap3mxq9bbn390xwrv2abnc3y437vqb"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; };
-  nearfar = derive2 { name="nearfar"; version="1.1"; sha256="0i2nc1b4vslgjj29x5q24yxv9l3i0g5hcrbm9xy1b3039n70cwix"; depends=[car GenSA MASS nbpMatching]; };
+  ncvreg = derive2 { name="ncvreg"; version="3.11-0"; sha256="0348xngd9357x3nzhpqbcxcp1vgb5ycz8wjv023lm9lmzyj8frzc"; depends=[]; };
+  ndjson = derive2 { name="ndjson"; version="0.7.0"; sha256="1hqbp5aii3x2yygsy4zfv3j2zl78fzrydqj3ycfl3k3nnrkrf8h5"; depends=[data_table dplyr dtplyr Rcpp]; };
+  ndl = derive2 { name="ndl"; version="0.2.18"; sha256="0b235v6jf98rrqp5aqw3jkk7mq8dbqmhb758zbzza1mavh4n2k7s"; depends=[Hmisc MASS Rcpp]; };
+  ndtv = derive2 { name="ndtv"; version="0.12.3"; sha256="08bvkfraj2sl879fywsl5k403xfhxfg55yd72nms2z8d3fqgcvj8"; depends=[animation base64 jsonlite MASS network networkDynamic sna statnet_common]; };
+  nearfar = derive2 { name="nearfar"; version="1.2"; sha256="116rq797a5fascirz8xg465fywjf40j1k5czryvqzpik0if0w00r"; depends=[car GenSA MASS nbpMatching]; };
   neariso = derive2 { name="neariso"; version="1.0"; sha256="1npfd5g5xqjpsm5hvhwy7y84sj5lqw9yzbnxk6aqi80gfxhfml4c"; depends=[]; };
   neat = derive2 { name="neat"; version="1.1.3"; sha256="0d8igx576jhi7f666nwn0wpdyvin974k5cfm7wdszzbnpng5961k"; depends=[igraph]; };
   neatmaps = derive2 { name="neatmaps"; version="1.1.0"; sha256="0qsc0jwnyadbm45qrskpmw12i980q11i988mga8ky3x4fa4jp82d"; depends=[dendextend ggplot2 heatmaply igraph pvclust]; };
@@ -8974,25 +9361,26 @@ in with self; {
   negenes = derive2 { name="negenes"; version="1.0-8"; sha256="0qyhypryp3p8c876jffg1syg05b370mw24clwlx733yx86qhmb1v"; depends=[]; };
   neighbr = derive2 { name="neighbr"; version="1.0"; sha256="0612nzpryj4xp0ncpvpn56x5n9ammzjp3ysq1rj1fc84h0p7nml3"; depends=[]; };
   neldermead = derive2 { name="neldermead"; version="1.0-11"; sha256="0gf9rfwz48sadl6960mpfb6a3l9n5p28yq3n0a9vz8mr57vh1dzg"; depends=[optimbase optimsimplex]; };
-  neotoma = derive2 { name="neotoma"; version="1.7.0"; sha256="0f4s5yw0yj4n8lkvbl2l3ivdclg9pknyss7qhppp85rdxzwxilpq"; depends=[analogue httr jsonlite leaflet plyr reshape2 xml2]; };
+  neotoma = derive2 { name="neotoma"; version="1.7.2"; sha256="0kxx1ymdy2grjmi7wb2lrk5hwrfgrlxpvhwwwkwxaqrpxmx6sk7v"; depends=[analogue dplyr httr jsonlite leaflet plyr reshape2 xml2]; };
   nephro = derive2 { name="nephro"; version="1.2"; sha256="1izmzx8lah322xzb42asfnrvr2c9yqd0zf7fmrhwd3p4rr1rqa7d"; depends=[]; };
-  nesRdata = derive2 { name="nesRdata"; version="0.1.0"; sha256="1h33hql0vgkr2ps1ysisdxxb0cnm18mh8sbd3fxy9xf42icwfwdb"; depends=[dataone dplyr purrr rappdirs readr]; };
+  nesRdata = derive2 { name="nesRdata"; version="0.2.0"; sha256="1cr5d600bnslxbm2kknzwivvb4zyfsrf8rbrk3kk0j6dpclx5x6s"; depends=[dataone dplyr purrr rappdirs readr]; };
   nestedRanksTest = derive2 { name="nestedRanksTest"; version="0.2"; sha256="0r08jp8036cz2dl1mjf4qvv5qdcvsrad3cwj88x31xx35c4dnjgj"; depends=[]; };
-  nestfs = derive2 { name="nestfs"; version="0.8.4"; sha256="1w2wb3wphpx8y17jwpnbqq9igyq854rsa35bhk51m422zhygqygk"; depends=[dgof foreach]; };
+  nestfs = derive2 { name="nestfs"; version="0.9"; sha256="0vx6bvm4wpx4hnyxnldvkj0il7j7hlrmlpiza1dawqr3kx08c86l"; depends=[dgof foreach pROC]; };
   net_security = derive2 { name="net.security"; version="0.3.0"; sha256="15vvcmakl9hl1srdhjf73g2bwwcxn93220i4gv0rcsw5732mjanz"; depends=[data_table dplyr jsonlite plyr R_utils stringr XML]; };
-  netCoin = derive2 { name="netCoin"; version="0.2.8"; sha256="0axac72fj5qhssdpx8k20lgayzpwzcd3pp7cz4mv6cwfzc0y8768"; depends=[haven igraph Matrix]; };
+  netCoin = derive2 { name="netCoin"; version="0.3.0"; sha256="1lzzl28q3ald01yaxiiwqj716cpslya8i2m89nydpylh0c1pgs52"; depends=[haven igraph Matrix]; };
   netSEM = derive2 { name="netSEM"; version="0.5.0"; sha256="0gcs38r3xwwcxhgs1xfbkccz9k0y7dk5kky48fvmys8v1p4rsjpp"; depends=[DiagrammeR DiagrammeRsvg gtools htmlwidgets knitr magrittr MASS png rsvg segmented svglite]; };
   netassoc = derive2 { name="netassoc"; version="0.6.3"; sha256="1hyshnbpq60a3y13b4sh1c2rk78x09q01b7q6xrgv10w7bn9r2sg"; depends=[corpcor huge igraph infotheo vegan]; };
   netcoh = derive2 { name="netcoh"; version="0.2"; sha256="0q60hvyparlwdww6as6hcdzfs6q3n8z1rfpj53r5q2s77x6q07xx"; depends=[Matrix Rcpp RcppArmadillo]; };
   netcom = derive2 { name="netcom"; version="1.0.4"; sha256="0fka14sffm0p1gldk27fd62ng05spfpbn665b4w5hdf1z4z0bs20"; depends=[clue expm igraph Matrix pdist pracma vegan]; };
+  netdep = derive2 { name="netdep"; version="0.1.0"; sha256="0mrbqn5d8iqvs98a0kski0vya135z7l902xafya96s2h288jchx7"; depends=[igraph igraphdata MASS mvrtn]; };
   netdiffuseR = derive2 { name="netdiffuseR"; version="1.20.0"; sha256="0z7k62dipksc8gfppicbknh5sig7jdlr80h15q89bbk26jg5lqsr"; depends=[boot igraph MASS MatchIt Matrix network networkDynamic Rcpp RcppArmadillo sna SparseM viridis]; };
   netgen = derive2 { name="netgen"; version="1.3"; sha256="1iywpl9n1yplnd38dff8m9mz1vlfbvplw393grhpav5czcknj160"; depends=[BBmisc checkmate ggplot2 igraph lhs lpSolve mvtnorm stringr]; };
   netgsa = derive2 { name="netgsa"; version="3.0"; sha256="0cqyiilpxhdi6zmibn85y1aqwpcs1aialz34klakmllzn6kvdsng"; depends=[corpcor glasso glmnet igraph Matrix]; };
-  netgwas = derive2 { name="netgwas"; version="1.5.0"; sha256="0ixdk602v58ii4awrvj63j0zn90z3csc0lcwajfa8j8ymryc0hgs"; depends=[glasso huge igraph MASS Matrix RBGL tmvtnorm]; };
-  netjack = derive2 { name="netjack"; version="1.0.0"; sha256="016byr8qsmmiyk5wdafn809w2sc71mav7jdxyg4cs48gzp7zslpp"; depends=[brainGraph ggplot2 igraph Rdpack]; };
+  netgwas = derive2 { name="netgwas"; version="1.7.0"; sha256="1jyn0i3i5pjvik9jpgyd9sd28p0ln1xh5nxzssw3nynp4hyqmvix"; depends=[glasso huge igraph MASS Matrix qtl RBGL tmvtnorm]; };
+  netjack = derive2 { name="netjack"; version="1.1.1"; sha256="0pb9phfdjfp8yxlv5p0qb6vxhh8vb9iviffzrbj8x8dy3y3c9vp5"; depends=[brainGraph ggplot2 igraph Rdpack]; };
   netmeta = derive2 { name="netmeta"; version="0.9-8"; sha256="0bkfxdz14lg9r51ykwmkmpm6vhbvly35hrcgj6f26g36ihagjksd"; depends=[magic MASS meta]; };
-  netrankr = derive2 { name="netrankr"; version="0.2.0"; sha256="1y56y5wv95d7mmjf8rrwr7cs0k64h9a2qbpind4xp0kakpjihn7m"; depends=[igraph Rcpp RcppArmadillo]; };
-  netregR = derive2 { name="netregR"; version="0.3.1"; sha256="0ki0ywnwjba53bram4dxxdxx631b0rywp1rjgj83nvdbg3mdcp7x"; depends=[Matrix]; };
+  netrankr = derive2 { name="netrankr"; version="0.2.1"; sha256="0csgi09ijp7ygwk7x057l9xjrzyhr7sav8hamh0p6i72l6719ssl"; depends=[igraph Rcpp RcppArmadillo]; };
+  netregR = derive2 { name="netregR"; version="1.0.1"; sha256="0n5absjra0imddz1spy1piij5rdz76wi4g568yby3rbhkm1896rs"; depends=[Matrix]; };
   nets = derive2 { name="nets"; version="0.9"; sha256="1wcr0fj50w3rqxw0k9cb81c2psdkb0dwwwzrjvxv50hksbhyi8kn"; depends=[igraph]; };
   network = derive2 { name="network"; version="1.13.0.1"; sha256="1bbkbqkqf1d7irfwh08c13c2pfypir1ssvlqrln83irqns1ikdv0"; depends=[]; };
   networkD3 = derive2 { name="networkD3"; version="0.4"; sha256="02wxki67drppgfka1is1ykg1f2rxf0x0657c0crj7ipfy62jbf1k"; depends=[htmlwidgets igraph magrittr]; };
@@ -9015,32 +9403,35 @@ in with self; {
   neutralitytestr = derive2 { name="neutralitytestr"; version="0.0.2"; sha256="1p1zjc3fiphkxflsyzrxx8af98aa0gp9pvby63mmrsjb0z7ps948"; depends=[cowplot dplyr ggplot2 ggpmisc pracma scales]; };
   neverhpfilter = derive2 { name="neverhpfilter"; version="0.2-0"; sha256="0m4gbqnjw2nmhf25svznlf6pd0b0mslk52lpirmlj1iv04w1aq1i"; depends=[xts zoo]; };
   newTestSurvRec = derive2 { name="newTestSurvRec"; version="1.0.2"; sha256="06p782md33wqh5wa1735yg5i01d42p74kl7h5qhqs9cd732ls6pz"; depends=[]; };
+  newsmap = derive2 { name="newsmap"; version="0.6"; sha256="1zcpwh8v7lswg0anjhjq8hmz8z9rjmvlyrh6jr5p01sj53mv9sha"; depends=[Matrix quanteda stringi]; };
   ngram = derive2 { name="ngram"; version="3.0.4"; sha256="1q4y64dy7vcjikbfx20fpdiy1kwvxay4y90xr5j8d8zkqnva0way"; depends=[]; };
   ngramrr = derive2 { name="ngramrr"; version="0.2.0"; sha256="1p8s4p3h27g647rxx9qjfad5dzbngjbmvhw4gz0jbsmfqrsf72by"; depends=[tau tm]; };
   ngspatial = derive2 { name="ngspatial"; version="1.2-1"; sha256="1c65ws9b9s2grr44lqg8026c4p2875d0426dfmrakpb44mw2zppp"; depends=[batchmeans Rcpp RcppArmadillo]; };
   ngstk = derive2 { name="ngstk"; version="0.2.1"; sha256="12zpl20i07d1f9navs9jjrialfh798wrfn1241j7s9h3rd6xi40l"; depends=[configr data_table stringr]; };
-  nhanesA = derive2 { name="nhanesA"; version="0.6.4.4"; sha256="0vl8bg718fk97x3yrjkg48hj3lap4gzhri53gzcwz9g4rfyrlwxp"; depends=[Hmisc magrittr plyr rvest stringr xml2]; };
+  nhanesA = derive2 { name="nhanesA"; version="0.6.5"; sha256="0bb53s379qrm8xqp4bsi5vgk6v6hvwadzjv09pvdp1n45z7rqj86"; depends=[Hmisc magrittr plyr rvest stringr xml2]; };
   nhlscrapr = derive2 { name="nhlscrapr"; version="1.8.1"; sha256="107k063279w9cy6in99rn03w2rq42ci8s6dvb9x6f9w7y3bdpvzn"; depends=[biglm bitops RCurl rjson]; };
   nhstplot = derive2 { name="nhstplot"; version="1.0.1"; sha256="1f07gfmbx80as54mlzdbs2z1vzc78rjy6i6m7zd4jplgcqdcynws"; depends=[ggplot2]; };
   nice = derive2 { name="nice"; version="0.4-1"; sha256="1p8vmimiq9sbjvbx6c2wqwwkpnzw4kkdvjry6qyadmm3frwhj5qb"; depends=[]; };
   nicheROVER = derive2 { name="nicheROVER"; version="1.0"; sha256="0sa7wfpzkin78vz48vwa5iac82v5l1s3zczdxz8sc2kyg22fj0aw"; depends=[mvtnorm]; };
-  nilde = derive2 { name="nilde"; version="1.1-1"; sha256="09r8xfwpz243xmb5l33fw7wf09lw5q9m57anqd2n5wrxfqzzz57h"; depends=[]; };
+  nilde = derive2 { name="nilde"; version="1.1-2"; sha256="07m52c4gw0vcyb6pya5z7m4y1kiy2zvh0gnhp80hxc7nhyx0rnqd"; depends=[]; };
   nima = derive2 { name="nima"; version="0.5.0"; sha256="1xpzq1mg2l9hnh83hbmxcqz3v0ai62ii7k688i8lpj0xnpsm25pl"; depends=[assertthat devtools ggplot2 ggthemes gridExtra gtools plyr ProjectTemplate scales survival]; };
-  nimble = derive2 { name="nimble"; version="0.6-11"; sha256="12vprr5snz05y3k4lq7x51yz1q4crwx5cn42dvbnff4pf7kpj218"; depends=[coda igraph R6]; };
-  nipals = derive2 { name="nipals"; version="0.4"; sha256="0h9jxmj44x3lllxk1y2izkslafbiab175qrsxlnfcvhnaj13zsds"; depends=[]; };
+  nimble = derive2 { name="nimble"; version="0.6-12"; sha256="1vgyqrcki9z60sxqfyj6smqrq2422g9g95fv5gmmqiwqiv89blxj"; depends=[coda igraph R6]; };
+  nipals = derive2 { name="nipals"; version="0.5"; sha256="1zrn1ykl9scd988wj3mm0j6g5q6lq04iwn2ibgap1lrsd0rw1zbf"; depends=[]; };
   nitrcbot = derive2 { name="nitrcbot"; version="1.2"; sha256="0lainbw9j5aj9s824afpxdjl3q2f728jfpdfji7kpi9hdg8jixhx"; depends=[dplyr httr jsonlite RCurl]; };
   nivm = derive2 { name="nivm"; version="0.3"; sha256="111jkgirgsl1j36xgwi81wzwxial3vdw8mqzi1faldxxd9a2cixm"; depends=[bpcp ssanv]; };
   nlWaldTest = derive2 { name="nlWaldTest"; version="1.1.3"; sha256="1cppdz8qvigjdz4sgr1gm2j09zi407xxmryc28zc7ps7rvgy344h"; depends=[]; };
+  nlaR = derive2 { name="nlaR"; version="0.3"; sha256="1s54dpz6z7pgj6jn0jjx8s1m318fbk6ra8wrzfvfbz9bcvgp0i2m"; depends=[rappdirs]; };
   nlcv = derive2 { name="nlcv"; version="0.3.5"; sha256="1ywnm8a13ifqa1bxnf659h1j6mg9iy02vaszyh9p966ps9c1pjab"; depends=[a4Core Biobase e1071 ipred kernlab limma MASS MLInterfaces multtest pamr randomForest RColorBrewer ROCR xtable]; };
   nleqslv = derive2 { name="nleqslv"; version="3.3.2"; sha256="1v9znvncyigw9r25wx2ma0b7ib179b488dl0qsrhp5zrcz7mcjgm"; depends=[]; };
+  nlgeocoder = derive2 { name="nlgeocoder"; version="0.1.3"; sha256="13d30kfgfsny5gnn3yjfnclky6yixaa8sg0m689rszqxrvbrj79x"; depends=[jsonlite]; };
   nlirms = derive2 { name="nlirms"; version="3.4.4"; sha256="1njyfip377a0f6hf9y32s077b4jv4h8ydbjgnl68yfypxbfn2xyx"; depends=[gridExtra gtable]; };
   nlme = derive2 { name="nlme"; version="3.1-137"; sha256="11vyxxc0n36vb8d8g02zr0402ymicvbifwdsqm7gy9iqqnwrn101"; depends=[lattice]; };
   nlmeODE = derive2 { name="nlmeODE"; version="1.1"; sha256="1zp1p98mzbfxidl87yrj2i9m21zlfp622dfnmyg8f2pyijhhn0y2"; depends=[deSolve lattice nlme]; };
   nlmeU = derive2 { name="nlmeU"; version="0.70-3"; sha256="05kxymgybziiijpb17bhcd9aq4awmp5km67l2py9ypakivi0hc6l"; depends=[nlme]; };
-  nlmixr = derive2 { name="nlmixr"; version="0.9.1-3"; sha256="0pl9dm09wc4wa0y64ncqcrrarmimahgcdzf1hz09aj5r5l5pvfvd"; depends=[BH brew cli crayon dparser fastGHQuad ggplot2 lattice lbfgs magrittr Matrix memoise minqa n1qn1 nlme numDeriv PreciseSums R_utils Rcpp RcppArmadillo RcppEigen rex RxODE StanHeaders vpc]; };
+  nlmixr = derive2 { name="nlmixr"; version="1.0.0-7"; sha256="1ibj2cxf09jnsf08idrd9q0fxg34i2wp56i4f6q4rq21aswh92qd"; depends=[BH brew cli crayon dparser fastGHQuad ggplot2 lattice lbfgs magrittr Matrix memoise minqa n1qn1 nlme numDeriv PreciseSums R_utils Rcpp RcppArmadillo RcppEigen rex RxODE StanHeaders tidyr vpc]; };
   nlmrt = derive2 { name="nlmrt"; version="2016.3.2"; sha256="1g0qq0a933ay65gkp04qgn2wqk6vw79pj2a228c2ski4rcmkjxyn"; depends=[]; };
   nlnet = derive2 { name="nlnet"; version="1.2"; sha256="00lcyz5csjj9qbhh7yw0qlbnyv32k0c2dpm23v04n9wkdgs67jy0"; depends=[coin e1071 earth fdrtool igraph randomForest ROCR TSP]; };
-  nloptr = derive2 { name="nloptr"; version="1.0.4"; sha256="1cypz91z28vhvwq2rzqjrbdc6a2lvfr2g16vid2sax618q6ai089"; depends=[]; };
+  nloptr = derive2 { name="nloptr"; version="1.2.1"; sha256="15yz60kljxwnhm2m3gryjzxl3ynhkhd5jiwc179b1hz6rlzf71hz"; depends=[]; };
   nlr = derive2 { name="nlr"; version="0.1-1"; sha256="12j2hp5fgpdz7pvlpykhf9zp1sw1f6vzhh5ykk9b2diaf3l55zsl"; depends=[GA MASS nlme quantreg robcor TSA tseries]; };
   nlreg = derive2 { name="nlreg"; version="1.2-2.1"; sha256="08pz3qycnsvz175ppj23i2i0wcif6imi6fc117n8802ln3npwm64"; depends=[statmod survival]; };
   nlrr = derive2 { name="nlrr"; version="0.1"; sha256="09wm8s5sadkhkq9pb3fjk66cb2xn8py46w1d7yp7fjhczh31bjsq"; depends=[Hmisc rms]; };
@@ -9053,44 +9444,44 @@ in with self; {
   nlsmsn = derive2 { name="nlsmsn"; version="0.0-4"; sha256="1gvpy8rq020l64bdw6n7kv354l7gwa2rgxarm6k0mqq7z21fxf58"; depends=[]; };
   nlsr = derive2 { name="nlsr"; version="2018.1.28"; sha256="113g656j6zqdqip6dw55pimmwq36xrxgfyix10y3qqn9lxvqrpqq"; depends=[digest]; };
   nlsrk = derive2 { name="nlsrk"; version="1.1"; sha256="0yqcsz5pdhqsrd86g0yx8bdac13fbmvg89phj3v4qvla2jfznjba"; depends=[]; };
-  nlstimedist = derive2 { name="nlstimedist"; version="1.1.1"; sha256="1222vj2w4f8xh7fkrzlyarr7980a6wj047p5p0nw3cfna3mmhi5b"; depends=[broom dplyr ggplot2 lazyeval minpack_lm nlstools]; };
+  nlstimedist = derive2 { name="nlstimedist"; version="1.1.3"; sha256="0wjf18fcm5w82sqza3nmwvqvd14zidvdf72wvkbgfjk4vgcrqj5l"; depends=[broom dplyr ggplot2 lazyeval minpack_lm nlstools]; };
   nlstools = derive2 { name="nlstools"; version="1.0-2"; sha256="0mjn1j9fqqgr3qgdr0ki4lfbd0yrkanvya4y2483q3wklqa6qvjc"; depends=[]; };
-  nlt = derive2 { name="nlt"; version="2.1-3"; sha256="1j0xrrbr1hvfda8rvnc17lj96m6cz24faxvwn68ilf7j1ab2lkgn"; depends=[adlift EbayesThresh]; };
-  nlts = derive2 { name="nlts"; version="0.2-2"; sha256="0bx6xqa3j0k01p43vnv5lcv2pryjzgsak77y1cr9rm2xwqa3j6az"; depends=[acepack locfit]; };
-  nmaINLA = derive2 { name="nmaINLA"; version="0.1.1"; sha256="0976jafmdhy2rz5fcarb7hh1vaanm8l2610hk06f5k93xjhypg8j"; depends=[]; };
+  nlt = derive2 { name="nlt"; version="2.2-1"; sha256="10wf00qzf28dxjfvv12wsqxlfn6xz15wk8njrzgsgm9px1g6s21f"; depends=[adlift EbayesThresh]; };
+  nlts = derive2 { name="nlts"; version="1.0-2"; sha256="0s49qjwavl9ns2746nn4zy4h4dh0njfcvznm3qd61qhs7np9w1db"; depends=[acepack locfit]; };
+  nmaINLA = derive2 { name="nmaINLA"; version="0.1.2"; sha256="0layk1pqry2g3xiwmasrnsvmw91sgg7iz15d6iz6hbq4za61hr0k"; depends=[]; };
   nmathresh = derive2 { name="nmathresh"; version="0.1.3"; sha256="09pxbizmvdp2l5j1gs0v3xk2lsyclx5rndaw6b4ccn61m3x060ls"; depends=[ggplot2 gridExtra gtable Matrix nnls]; };
   nmfem = derive2 { name="nmfem"; version="1.0.3"; sha256="1v808k25g0ph1wvx1j89izfxy9szn0m4sf965d8nkygrk184i9gj"; depends=[d3heatmap dplyr mixtools plyr tidyr]; };
   nmfgpu4R = derive2 { name="nmfgpu4R"; version="0.2.5.2"; sha256="05066rgbbp6kj2d67nzf3d1pf32gypz9ammz4ba88yxblydb3cwk"; depends=[Matrix Rcpp SparseM stringr]; };
   nmixgof = derive2 { name="nmixgof"; version="0.1.0"; sha256="0cbwrsxrcf8pn4ycn6r0z8jdidw5l6kdvwyrks69fq4pjzx988d6"; depends=[Rcpp unmarked]; };
-  nmslibR = derive2 { name="nmslibR"; version="1.0.2"; sha256="1ya3dqnkrlvpil2nypcl3pp6f3x20ip40avnrbqgbylak7yqg9yw"; depends=[KernelKnn Matrix R6 Rcpp RcppArmadillo reticulate]; };
+  nmslibR = derive2 { name="nmslibR"; version="1.0.3"; sha256="1m3bq0vg774kqragdx1ydm4q2if3yn9llbd6ybv3c8bmbdb9h405"; depends=[KernelKnn Matrix R6 Rcpp RcppArmadillo reticulate]; };
   nmw = derive2 { name="nmw"; version="0.1.4"; sha256="1vj7b2p40x0h3xp45qzar86i9439mj8y3r5hnlbwa025jqdf2g0q"; depends=[numDeriv]; };
-  nnTensor = derive2 { name="nnTensor"; version="0.99.1"; sha256="0ai3mqyw24mwl6gcz2jmlvfv59y937n675gram1ajwxdlx76fxff"; depends=[fields plot3D rTensor tagcloud]; };
+  nnTensor = derive2 { name="nnTensor"; version="0.99.4"; sha256="1z5dafcnj9cnslxljij5ycmzagvvp27z8b7p6i3hz134z4vbx5jb"; depends=[fields plot3D rTensor tagcloud]; };
   nna = derive2 { name="nna"; version="0.0.2.1"; sha256="17cz1jf7iv61wspqldfdwbdjhlr0wq09idkzlivfb8aik5w9f0z5"; depends=[]; };
   nneo = derive2 { name="nneo"; version="0.1.0"; sha256="0jaaz15y1csh3bwmzp7mgx86m3f0w3ykzb8qdvg8ak2grxw3wl6a"; depends=[crul data_table fauxpas jsonlite tibble]; };
   nnet = derive2 { name="nnet"; version="7.3-12"; sha256="17amqnw9dpap2w8ivx53hxha2xrm0drwfnj32li0xk41hlz548r7"; depends=[]; };
   nnetpredint = derive2 { name="nnetpredint"; version="1.2"; sha256="1c6s9wm6vhylwv4xhp2hkllw18zj8hdr17ls9vlxm9qs3wx1v48w"; depends=[RSNNS]; };
   nnfor = derive2 { name="nnfor"; version="0.9.2"; sha256="1wxv8s5547spw155rj7nlilsfn5d7m40xpfy87mady93n25pwm3d"; depends=[forecast glmnet MASS neuralnet plotrix]; };
-  nngeo = derive2 { name="nngeo"; version="0.1.8"; sha256="0fxiq65kd1q7w95m9hhg18xw3l8czi0li60wkr9h3dakmy2s9j7m"; depends=[geosphere lwgeom RANN Rcpp sf sp units]; };
+  nngeo = derive2 { name="nngeo"; version="0.2.2"; sha256="0wjbw1b0ldsl28k3k8i6x0f9msv4a2wwgbvb0wshq0kk0yamanpz"; depends=[geosphere lwgeom RANN Rcpp sf sp units]; };
   nnlasso = derive2 { name="nnlasso"; version="0.3"; sha256="1n7karlmgq61z9ywfx9xb5wvmxx40ydpnzzazj1xr70qlv5m0qk4"; depends=[]; };
   nnls = derive2 { name="nnls"; version="1.4"; sha256="07vcrrxvswrvfiha6f3ikn640yg0m2b4yd9lkmim1g0jmsmpfp8f"; depends=[]; };
   noaastormevents = derive2 { name="noaastormevents"; version="0.1.0"; sha256="1pkfmvp20f6xi2iy7l6c67zspp9f4wkrh7s308hlklms2difhp6m"; depends=[choroplethr choroplethrMaps data_table dplyr forcats ggplot2 htmltab hurricaneexposure lubridate maps plyr RColorBrewer stringr tidyr viridis XML]; };
+  nodbi = derive2 { name="nodbi"; version="0.1.0"; sha256="0i82713yhasl5n5zdncpsfplvfm77dvxjvhb4vvlsnfwk364gadf"; depends=[data_table jsonlite]; };
   nodeHarvest = derive2 { name="nodeHarvest"; version="0.7-3"; sha256="0nh3g50rk9qzrarpf29kijwkz9v60682i0ag77j2ipyvhhbpwpkc"; depends=[quadprog randomForest]; };
   nodiv = derive2 { name="nodiv"; version="1.2.0"; sha256="0bdhlq5nd169hbwnik4z843xzh5bbmahrvyxj54626zxyvf1fmfb"; depends=[ape picante raster sp vegan]; };
   nofrills = derive2 { name="nofrills"; version="0.3.0"; sha256="18hryq6clywlr2f45az6ryslkkarly45nacln4bwk6ip0yfl5s98"; depends=[rlang]; };
   noia = derive2 { name="noia"; version="0.97.1"; sha256="0yldfmnb4ads4s9v9cj1js8zf1w1hxasqq6qjyzwknmvmp7kh62h"; depends=[]; };
   noise = derive2 { name="noise"; version="1.0"; sha256="1a48s9vpz3nc058966lad8hydmg7z0vbzfwcf6nxc9g3c8mw4nig"; depends=[preprocessCore]; };
   nomclust = derive2 { name="nomclust"; version="1.1.1106"; sha256="17hb89k72sw3ya0wm3n95mpx4vj7mpl4mzs8qwl2773dh2mcjgjq"; depends=[cluster dummies]; };
-  nomine = derive2 { name="nomine"; version="1.0.0"; sha256="1yaxhac002fxcyiz5x562fnhrsq9h9nx0qmw4rykjsc5l2qbi9gd"; depends=[httr RCurl]; };
-  nomisr = derive2 { name="nomisr"; version="0.3.0"; sha256="0ia1i3gzp7wp8hf57arajbf7063m4jpbb2hl0l03rwg1z4afb7jd"; depends=[dplyr httr jsonlite readr rlang rsdmx tibble]; };
+  nomisr = derive2 { name="nomisr"; version="0.4.0"; sha256="1ns05jpq20ql3pqandfil7zln4b9lls4vpscnaai3mxf9434ga9x"; depends=[dplyr httr jsonlite readr rlang rsdmx tibble]; };
   nomogramEx = derive2 { name="nomogramEx"; version="3.0"; sha256="16235rwblnzn8k53817llwy2pzhnpifh6ij159nxymjm8ar9qpbp"; depends=[pracma rms]; };
   noncensus = derive2 { name="noncensus"; version="0.1"; sha256="0cfj17bfzddfshhhzv2ijhrp9ylcscmsysswjcsjfxmy3gbkd00q"; depends=[]; };
   noncompliance = derive2 { name="noncompliance"; version="0.2.2"; sha256="1lcybgj95z7lz7p26xbsdiv0vvms4ab4f8kad0pclacf1l43v0j6"; depends=[data_table Rcpp]; };
   noncomplyR = derive2 { name="noncomplyR"; version="1.0"; sha256="1a9m6r9cizw42nmy24jdsrsbllg5z84fs8b239axnh1fxzskg2qy"; depends=[MCMCpack]; };
   nonlinearICP = derive2 { name="nonlinearICP"; version="0.1.2.1"; sha256="1m9a1f0yrbjl0nx2l7r76pyi78b2bxj8v4jx92yga91f975mw6np"; depends=[caTools CondIndTests data_tree randomForest]; };
-  nonlinearTseries = derive2 { name="nonlinearTseries"; version="0.2.3"; sha256="1pcah255hh3lqabxgjb5fsaap4s2d92lvxw9a48l1p4dkmm1lbsx"; depends=[Matrix Rcpp rgl TSA tseries]; };
-  nonmem2R = derive2 { name="nonmem2R"; version="0.1.9"; sha256="06irvlyhfimcx3izbfivvrxc9xbiwvqajvl5n47krgbkbd4r4ag0"; depends=[ggplot2 lattice latticeExtra MASS mvtnorm]; };
-  nonmemica = derive2 { name="nonmemica"; version="0.8.2"; sha256="1nz0sq8a1xgpasii2hpxiz79d501nnfs6awaqpp8m8lviimnhv68"; depends=[csv dplyr encode lazyeval magrittr metaplot rlang spec tidyr xml2]; };
-  nonnest2 = derive2 { name="nonnest2"; version="0.5-1"; sha256="02pflg6frvsq7azwcr660qj9mpj4q3kjx6xr6v5lshg77mjfhgdg"; depends=[CompQuadForm lavaan mvtnorm sandwich]; };
+  nonlinearTseries = derive2 { name="nonlinearTseries"; version="0.2.5"; sha256="0vpa8r8b7j2d19da49cw4jg8zm74kvg9npwf4aqwxw8ndkfgpyj0"; depends=[Matrix Rcpp RcppArmadillo rgl TSA tseries zoo]; };
+  nonmem2R = derive2 { name="nonmem2R"; version="0.1.10"; sha256="05ipdkvryx21kqc2kajy1xmpd9w33k8w0z6zq786kp9ks76pmfrb"; depends=[ggplot2 lattice latticeExtra MASS mvtnorm splines2]; };
+  nonmemica = derive2 { name="nonmemica"; version="0.8.3"; sha256="07n6cz2vlg5mk0wvbi86j2v9v12vxpll6zkc6f4nf7cb700r9kwa"; depends=[csv dplyr encode lazyeval magrittr metaplot rlang spec tidyr xml2]; };
+  nonnest2 = derive2 { name="nonnest2"; version="0.5-2"; sha256="1bq44qqmm59j91m0sny4xnqmxqlga4cm48qdsw8xfs3x19xwmxk6"; depends=[CompQuadForm lavaan mvtnorm sandwich]; };
   nonpar = derive2 { name="nonpar"; version="1.0.1"; sha256="0pxks3nga7jrcvq0pzr1axj3a9xvzky836fl7966a09ws1vff7i4"; depends=[]; };
   nonparaeff = derive2 { name="nonparaeff"; version="0.5-8"; sha256="1kkn68m7cqlzx3v539cjxw3x5a2y86lvmyv2k98s87m3yvqg0gdk"; depends=[gdata geometry Hmisc lpSolve psych pwt rms]; };
   nonrandom = derive2 { name="nonrandom"; version="1.42"; sha256="0icm23hw593322z41wmjkwxqknh2pa9kpzbrch7xw1mhp93sd5ll"; depends=[lme4]; };
@@ -9102,7 +9493,7 @@ in with self; {
   nord = derive2 { name="nord"; version="0.0.1"; sha256="0ajymjn2xw7zik62nhjp11g8bkvsqhhsrzi3bl2k70y544wbl3kn"; depends=[ggplot2]; };
   nordklimdata1 = derive2 { name="nordklimdata1"; version="1.2"; sha256="0c2hbh3qy8nrs275lxpzfgqsfgwp81m4kv0layvnjj09fcybm54x"; depends=[]; };
   norm = derive2 { name="norm"; version="1.0-9.5"; sha256="01j1h412yfjx5r4dd0w8rhlf55997spgb6zd6pawy19rgw0byp1h"; depends=[]; };
-  normalp = derive2 { name="normalp"; version="0.7.0"; sha256="1s12x2qln3s4bbqsm4p3cq4g6461z73r858g6ym1awamhbmncnrl"; depends=[]; };
+  normalp = derive2 { name="normalp"; version="0.7.0.1"; sha256="1gvbqirvb0q6c3831qqm5x7nj7rls1v7nfj7mf1nmwg5b0ljakp0"; depends=[]; };
   normalr = derive2 { name="normalr"; version="1.0.0"; sha256="1ahrg188vbhnrnwag0zi6lcb3g0y1mbz06sl3j1wyllq5l918cc7"; depends=[magrittr MASS purrr rlang shiny]; };
   normtest = derive2 { name="normtest"; version="1.1"; sha256="073r2mwfs6c4vqh8921nlyygl0f20nhv997s0iwf00d3jckkc4pp"; depends=[]; };
   normwhn_test = derive2 { name="normwhn.test"; version="1.0"; sha256="1kr45bfydk40hgdg24i2f28cdaw65hg9gmsgv4lsvvr2m3r74vi6"; depends=[]; };
@@ -9116,7 +9507,7 @@ in with self; {
   notifyme = derive2 { name="notifyme"; version="0.3.0"; sha256="0b6xrv6c4id7rs0dafg96pl4brn4yma5xh9wjz78ql44bg3w5s91"; depends=[dplyr httr magrittr]; };
   nowcasting = derive2 { name="nowcasting"; version="0.1.3"; sha256="1b74rqz7y4g5zyrbmns27v60jpv13s5aax9dyiyvnk2y7ng1kp5x"; depends=[corpcor DBI httr lubridate magic matlab Matrix RCurl RMySQL xts zoo]; };
   noweb = derive2 { name="noweb"; version="1.0-4"; sha256="17s65m1m8bj286l9m2h54a8j799xaqadwfrml11732f8vyrzb191"; depends=[]; };
-  np = derive2 { name="np"; version="0.60-8"; sha256="17h67a510wh83800ri6g02wvznrlhigxni8shyijz1iaxcpk8k4j"; depends=[boot cubature quadprog quantreg]; };
+  np = derive2 { name="np"; version="0.60-9"; sha256="1z4jcpx8bbgwslv42wrphfd1qfq965qjn0kmfxm5f6hbbycahcgy"; depends=[boot cubature quadprog quantreg]; };
   npIntFactRep = derive2 { name="npIntFactRep"; version="1.5"; sha256="14ms66ppzb4jjsa3fparic6gdn913f6wv2ccjyb02j1ahs4iaa4g"; depends=[ez plyr]; };
   npROCRegression = derive2 { name="npROCRegression"; version="1.0-5"; sha256="09ngfj0bd9cp19lpwsbknp2y71x36k03ph84bmf67wm1q2na7f93"; depends=[lattice]; };
   nparACT = derive2 { name="nparACT"; version="0.8"; sha256="0zwhz52j526n3xd21s7kghjaby56a8g296bkkc6scaa23zn1xg4b"; depends=[ggplot2 stringr zoo]; };
@@ -9130,7 +9521,7 @@ in with self; {
   nplplot = derive2 { name="nplplot"; version="4.5"; sha256="1dpbs0jb34gv0zj528357z1j2pwahjbp04rm7jir6qk0jhyaxxgh"; depends=[]; };
   nplr = derive2 { name="nplr"; version="0.1-7"; sha256="1h3qv9dlw2gx8km3slyvrl588nif1n87df8xwmm6p75ziqhn2f56"; depends=[]; };
   npmlda = derive2 { name="npmlda"; version="1.0.0"; sha256="1dr25an7cac89jyb8zhmj3ry6lq7sh7zxci1injplnk4gzy17mc5"; depends=[]; };
-  npmlreg = derive2 { name="npmlreg"; version="0.46-3"; sha256="1k1l977g1a86918k6w7h2m8145x7adb8r7q2s4jky8s9ixa14hz3"; depends=[statmod]; };
+  npmlreg = derive2 { name="npmlreg"; version="0.46-5"; sha256="1f0bzccmral2y56aih37gmi6mjww6wmp2a8z6yxm501fgj2lgzfc"; depends=[statmod]; };
   npmr = derive2 { name="npmr"; version="1.1"; sha256="1ss8ypvv6qcdxv7l3szivliwmhidmzi3572p3nz96ysndf56akl4"; depends=[]; };
   npmv = derive2 { name="npmv"; version="2.4.0"; sha256="04lfks2rlax59gxdnbgkpmk2vaax718z6hkgsvmyxf52iby6rvlr"; depends=[Formula]; };
   nppbib = derive2 { name="nppbib"; version="1.0-0"; sha256="075jb13zckkh66jwdmdlq4d2drjcc3lkj26px3w79b91223yymf2"; depends=[]; };
@@ -9138,7 +9529,8 @@ in with self; {
   npregfast = derive2 { name="npregfast"; version="1.5.1"; sha256="0s9ci3nybzwykrgi9z2rqp6l15mqbxf759ks0clvkbm7wxv3whk5"; depends=[doParallel foreach ggplot2 mgcv sfsmisc shiny shinyjs wesanderson]; };
   nprobust = derive2 { name="nprobust"; version="0.1.3"; sha256="1zr89myhamcxzk7j04rxcc4mbi86pf09kl70p8niklm0b3wmsjzj"; depends=[ggplot2 Rcpp RcppArmadillo]; };
   nproc = derive2 { name="nproc"; version="2.1.1"; sha256="0wpny7c1n9mmv1yywlws8gjbidkrikvcqcckrxpba9avjw2c5df8"; depends=[ada e1071 glmnet MASS naivebayes randomForest ROCR tree]; };
-  npsf = derive2 { name="npsf"; version="0.3.1"; sha256="1mv2dzn3gc7b9ynpw8dv22xd31igg4hmkgrds12n9920pghkya44"; depends=[Formula Rcpp]; };
+  nprotreg = derive2 { name="nprotreg"; version="1.0.0"; sha256="06n82i5m7sgfj759zdwwh8fqybkbchvnaaqcds64m6hbms592bh3"; depends=[expm]; };
+  npsf = derive2 { name="npsf"; version="0.4.1"; sha256="0vl02ysfmbxfzzbrjhiz8j129waz9cnpmds978fmv08l6wsjr3mi"; depends=[Formula Rcpp]; };
   npsm = derive2 { name="npsm"; version="0.5"; sha256="12jq6ygp3di5rknh7izrr3bxvpn6bqnj3jhfxzf29yf0bd86hzqk"; depends=[plyr Rfit]; };
   npsp = derive2 { name="npsp"; version="0.5-3"; sha256="0ck6iymfc73bzrifdc2sagcliz1yakqk1yv67a3ykha996jsrx99"; depends=[quadprog]; };
   npsr = derive2 { name="npsr"; version="0.1.1"; sha256="1fzvilzjg9z05991sr1s1bdp17kfl6d1580qdllk8is9ac06np0v"; depends=[gmp infotheo MASS]; };
@@ -9146,29 +9538,31 @@ in with self; {
   npsurv = derive2 { name="npsurv"; version="0.4-0"; sha256="1wq4c9yfha5azjhrn40iiqkshmvh611sa90jp3lh82n4bl9zfk20"; depends=[lsei]; };
   nricens = derive2 { name="nricens"; version="1.6"; sha256="0fpgp6k3mhb0qxbx6248k9bscnmlzwj70mqh631a1nc4cpdjvw3q"; depends=[survival]; };
   nsRFA = derive2 { name="nsRFA"; version="0.7-14"; sha256="0sd3br2a5jf6mqbxk8s2i7px9vi9bk3pl8bd5884k40xqcj77irs"; depends=[]; };
-  nsROC = derive2 { name="nsROC"; version="1.0"; sha256="0c99z8kknbrnbyyv7p79sj848aq7b5n4m4r7v1yrcs61ackrdn2n"; depends=[sde survival]; };
+  nsROC = derive2 { name="nsROC"; version="1.1"; sha256="1fi7k61fja98kpn528jprjdycwz01rnqm368m82anxh21k7q4s1m"; depends=[sde survival]; };
+  nsapi = derive2 { name="nsapi"; version="0.1.1"; sha256="06xf2p6f911vwpzky47r35fjgjvlhp13p9pf1zlvjrv66kdw8vbp"; depends=[crul xml2]; };
   nscancor = derive2 { name="nscancor"; version="0.6.1-25"; sha256="183kvzlln5lhmi51dm0skq1165c3hhy1yz5h2g7nxwqk2b4p23xj"; depends=[]; };
   nscprepr = derive2 { name="nscprepr"; version="0.1.1"; sha256="1rd32zywrzyxz6hpn9s6cwjlg8q8rz3cc0p3b5gan8bicx0ilwjc"; depends=[dplyr lubridate stringr]; };
-  nse = derive2 { name="nse"; version="1-00.17"; sha256="16zam539ir29m9ixyim9bqnf3sdy8aaaaly3wf96i3csgysf8pjc"; depends=[coda mcmc mcmcse np Rcpp sandwich sapa]; };
+  nse = derive2 { name="nse"; version="1.19"; sha256="107ri9325ga4kgvs5a3j3698dc3m4v28cb02ypc4dan6f3fa9h8i"; depends=[coda mcmc mcmcse np Rcpp sandwich]; };
+  nseval = derive2 { name="nseval"; version="0.4"; sha256="18avir5zllvm2sbi9616k7dlb8yxhvnbji7xshr4kcfvy1fvn2ia"; depends=[]; };
   nsga2R = derive2 { name="nsga2R"; version="1.0"; sha256="04jj0a3isfc348vg46il5x9l33cr7xawz5w0mm4pwr6djhd8nfhx"; depends=[mco]; };
   nsgp = derive2 { name="nsgp"; version="1.0.5"; sha256="0piajjz3r71dnjw7lwpjhbaygxcrbbxfvhf8p3n2izyr2pw5fml9"; depends=[MASS]; };
   nspmix = derive2 { name="nspmix"; version="1.4-0"; sha256="1cd133ncnr4g0n6w4c44q6mda8y1n7cfmsgy1x1kczvwp7cm9kk2"; depends=[lsei]; };
   nsprcomp = derive2 { name="nsprcomp"; version="0.5.1-2"; sha256="1zlc1ximx96f235c0l8qfs6vbp1kpnbf943wxsfahnnlnxvwi59f"; depends=[]; };
-  nucim = derive2 { name="nucim"; version="1.0.0"; sha256="0fyapw6f5wkybr4mwmqpk9wy349j5sa4q26pci1bsy4ly2wf9wx6"; depends=[bioimagetools EBImage fields stringr]; };
-  nullabor = derive2 { name="nullabor"; version="0.3.1"; sha256="0anwla6x9y2i7yd6r0yi1xhy0zfqwfpp5h1f18gji11nmiva9d81"; depends=[dplyr fpc ggplot2 MASS moments plyr]; };
+  nucim = derive2 { name="nucim"; version="1.0.6"; sha256="0bw9a2xz2w5jlr2qlbia6jfm2yp09n3gzg8a630p1ks75xvlmkbx"; depends=[bioimagetools EBImage fields stringr]; };
+  nullabor = derive2 { name="nullabor"; version="0.3.5"; sha256="0hnrawf8s2g0xjc9kh2p3pbdnbai7q71z7arab5mnrz6qbiyym34"; depends=[dplyr forecast fpc ggplot2 magrittr MASS moments purrr rlang tibble tidyr tidyverse tsibble]; };
   numDeriv = derive2 { name="numDeriv"; version="2016.8-1"; sha256="07ni52rwiap4wilfz94w5mrqaxr59axxmgn57857ip4p6qkiss0v"; depends=[]; };
   numGen = derive2 { name="numGen"; version="0.1.1"; sha256="1y41wq31r8126dz1sj23smq2k6v9yqczq4ddgzqb73dsrx9dmmc0"; depends=[]; };
   numKM = derive2 { name="numKM"; version="0.1.0"; sha256="0pnwb7skp5jx5ibgfkympq59m9sf71gvk5zc0fwik539vrzfykdf"; depends=[survival]; };
-  numOSL = derive2 { name="numOSL"; version="2.5"; sha256="0wrddd5yvilp66p2m9jbchd0spb55zgl3k63zf3yq3dc8jdrvzvy"; depends=[]; };
+  numOSL = derive2 { name="numOSL"; version="2.6"; sha256="03h1p56650x4my5vq5jlmjsz5xj0w2j75qfr08rh7nr38dwgp1k8"; depends=[]; };
   numbers = derive2 { name="numbers"; version="0.7-1"; sha256="1k5a24pnjhn3h330q0s7ivk2v5dsjmg2xwlhfinzixihnwhc12xy"; depends=[]; };
   numbersBR = derive2 { name="numbersBR"; version="0.0.2"; sha256="0ihxlny745gpz1ngq862rydn1zwn8zni1xw9mmgw8hkylsrnjfq8"; depends=[stringr]; };
   numform = derive2 { name="numform"; version="0.4.0"; sha256="09vim4ajnnkdf27ag5j8pj7p8qyfakfh3ar1dki8bqzms2d7bkcm"; depends=[]; };
   nutshell = derive2 { name="nutshell"; version="2.0"; sha256="1v11g5wqyxnj29b7akl0cwa34hcqs79ijbiv735pg3df4ggyrzvm"; depends=[nutshell_audioscrobbler nutshell_bbdb]; };
   nutshell_audioscrobbler = derive2 { name="nutshell.audioscrobbler"; version="1.0"; sha256="10fvc5d22gnfb0bkgbww48f0vvcaja96g5gfv85kap939j11172j"; depends=[]; };
   nutshell_bbdb = derive2 { name="nutshell.bbdb"; version="1.0"; sha256="19c4047rjahyh6wa6kcf82pj09smskskvhka9lnpchj13br8rizw"; depends=[]; };
+  nvmix = derive2 { name="nvmix"; version="0.0-1"; sha256="13pp664n5f06gavny586xrwm1n18jndr0hlqx5fdy68n6py0vz9r"; depends=[qrng]; };
   nws = derive2 { name="nws"; version="1.7.0.1"; sha256="1fn92n6brjhh8hpvhax7211cphx2cn0rl99kjqksig6z7242c316"; depends=[]; };
   nycflights13 = derive2 { name="nycflights13"; version="1.0.0"; sha256="10b05cxpiysvlif59lriprxcyhgk59d3qmcpwwzk88wy6bicl9hn"; depends=[tibble]; };
-  nyctaxi = derive2 { name="nyctaxi"; version="0.0.1"; sha256="187fs819g45f8irx2s9bgwnzr00lyamfv2ra88kyb8q2cq1icwwy"; depends=[DBI dplyr etl rlang stringr]; };
   nzelect = derive2 { name="nzelect"; version="0.4.0"; sha256="19kcbq454yg9g76ix7v3nibgw2203d7vv6f2d6d2zkcc0h08bjm7"; depends=[]; };
   nzpullover = derive2 { name="nzpullover"; version="0.3.0"; sha256="0b3mz5i58m48fa1x7gv4l3gqj0gvrar201ph2l1gkbcnfmazwjp8"; depends=[]; };
   oXim = derive2 { name="oXim"; version="1.2.2"; sha256="1hi4ps36amvgqgj64yc3cvy4sx32z1az6lk5yy1sciy6074k5byb"; depends=[gstat imagine R_matlab sp]; };
@@ -9188,24 +9582,26 @@ in with self; {
   observer = derive2 { name="observer"; version="0.1.2"; sha256="1027827k57qb4xppx0xxxffd1s3n7pz754irdx3v1v3piix8xi8m"; depends=[bazar bit dplyr lazyeval magrittr tibble]; };
   oc = derive2 { name="oc"; version="1.01"; sha256="12idrh4jxxq28lgqzr6jzgrvmmwysh5amzhmmaqn3yz49i17gcaf"; depends=[pscl]; };
   occ = derive2 { name="occ"; version="1.1"; sha256="1aka29qqwbd494kvi15yyyqkb9hks4ky2gcvykxhx2drm2fnsn4g"; depends=[]; };
-  oce = derive2 { name="oce"; version="0.9-23"; sha256="0k5h6k4y9bas2aqwkh1dkxmwgx4d41hxy87zfih5iq8ff61d03rr"; depends=[gsw testthat]; };
+  oce = derive2 { name="oce"; version="1.0-1"; sha256="0wn49xp7zvfipxvx0jdbqqldinbq0ccsqipljsidc3gzhf7jh67p"; depends=[gsw Rcpp testthat]; };
   oceanmap = derive2 { name="oceanmap"; version="0.1.0"; sha256="1kkjc213nn2ks7cqzchbmjvyp9hci8qndv8migpmyf5vjbm7d297"; depends=[abind extrafont fields lubridate mapdata maps maptools ncdf4 plotrix raster sp]; };
   ocedata = derive2 { name="ocedata"; version="0.1.3"; sha256="0lzsyaz8zb6kiw86fnaav2g2wfdhyicxvm81ly5a9z4mjch3qj02"; depends=[]; };
   ockc = derive2 { name="ockc"; version="1.0"; sha256="0chzrs3ipa2518r4d35z4fxffgq12p1mwj0hzkxw19gdgq6aa8s7"; depends=[flexclust modeltools]; };
   ocomposition = derive2 { name="ocomposition"; version="1.1"; sha256="0fk8ia95yjlvyvmjw7qg72piqa40kcqq9wlb3flc6a81pys1ycb5"; depends=[bayesm coda]; };
   odbc = derive2 { name="odbc"; version="1.1.6"; sha256="146phrsks0hfd1bfxx452kkq7ximk3fwjz9lqg9fdykar5sr6vjj"; depends=[BH bit64 blob DBI hms Rcpp]; };
   odds_converter = derive2 { name="odds.converter"; version="1.4.8"; sha256="09s8pg55gpsxmrbimzg5rsr1n07la93781sar6vab5p9zn9zxgx4"; depends=[]; };
-  oddsratio = derive2 { name="oddsratio"; version="1.0.2"; sha256="0s9w5iqcabkc7lqdh27nmg7xnw2jpwik5djjlqxb6xgabzls97d6"; depends=[cowplot ggplot2 MASS mgcv]; };
+  oddsratio = derive2 { name="oddsratio"; version="1.0.3"; sha256="1kdqnai8hbhxg9gjn9j7zgm8mw4bd765jkdrwrk9q65fpvc62f5k"; depends=[cowplot ggplot2 MASS mgcv]; };
   odeintr = derive2 { name="odeintr"; version="1.7.1"; sha256="0wfb5lgv10p0qyfbn9hdg14bda37v43lpgbwv6nbw63zzbsbazqi"; depends=[BH Rcpp]; };
   odk = derive2 { name="odk"; version="1.5"; sha256="0fcnr4c1clwx1sk6fgg4cx506gdi90n2h05g0i47p4s5bra0qwwl"; depends=[gsheet openxlsx]; };
-  odpc = derive2 { name="odpc"; version="1.0.0"; sha256="1mhak9drp0a7h1yrbk08cs00hbvkfkj8r1y6klhr40sdych4q506"; depends=[forecast gdpc Rcpp RcppArmadillo]; };
-  odr = derive2 { name="odr"; version="0.7.3"; sha256="07jfd809wv92ijgw1r1nq9516zi2rkf3ik243br42glf6lszn19p"; depends=[]; };
+  odpc = derive2 { name="odpc"; version="2.0.0"; sha256="1lpd7x2vq8qdgf0nag0sqzf1jpbig52zr3glk17n7cl50v2m19ii"; depends=[doParallel foreach forecast Rcpp RcppArmadillo]; };
+  odr = derive2 { name="odr"; version="1.0.0"; sha256="0niadinljx5pph329dgixivdc9s1l27ik9755fbfhmplhj92ihi2"; depends=[]; };
   oec = derive2 { name="oec"; version="2.7.8"; sha256="0qi5xkyh5xgwcivihnc9wv96lzhdzlcz4zv08pvpxf7dx1qhafrj"; depends=[curl dplyr jsonlite magrittr purrr readr rlang stringr]; };
   oem = derive2 { name="oem"; version="2.0.8"; sha256="08j9y9vq31skvdpg0kyqj50d77aijd2d95vcwm92df5vcvw9bpwz"; depends=[BH bigmemory foreach Matrix Rcpp RcppArmadillo RcppEigen]; };
-  officer = derive2 { name="officer"; version="0.3.1"; sha256="1qpy2srk4sqmnqmpaivgp5j5nc3b58mjbibzkq5nw784jni13jmj"; depends=[base64enc digest htmltools magrittr R6 Rcpp uuid xml2 zip]; };
+  ofGEM = derive2 { name="ofGEM"; version="1.0"; sha256="0xdkl8k12an9pdy6i5nay4m2iakrwsp0lr3zl8gphii75j0ywz7k"; depends=[CompQuadForm forestplot MASS]; };
+  officer = derive2 { name="officer"; version="0.3.2"; sha256="14b6ii9h3fi5g8ja929mfhxps9r7x78flqjdy437y9aygkhmiz2i"; depends=[base64enc digest htmltools magrittr R6 Rcpp uuid xml2 zip]; };
   oglmx = derive2 { name="oglmx"; version="3.0.0.0"; sha256="13axmhbqhv4kkcdsdmp9r7p0d0kyqlsaqgyyllbkxlxb4hfz79b6"; depends=[maxLik]; };
-  ohtadstats = derive2 { name="ohtadstats"; version="1.1.1"; sha256="1d011xcrn9zhb4pf9wkwlynvz3kkk95yk2l5qs352ra1dhki7b6k"; depends=[lattice]; };
+  ohtadstats = derive2 { name="ohtadstats"; version="2.0.0"; sha256="0vi0hi90l8p80kf0769iidlaq9j11myhxrj41lvxr70q4h4slr8j"; depends=[lattice]; };
   oii = derive2 { name="oii"; version="1.0.2.1"; sha256="1n41hikn53ikyynsravg127cw5csa8s0s1l63w5hym7c6j625ya5"; depends=[Deducer gmodels rapportools]; };
+  ojUtils = derive2 { name="ojUtils"; version="0.1.0"; sha256="0q1w99wfahi8n2278njbxk3qn3xd6q2rhqr7afc904x9xpxadazc"; depends=[Rcpp testthat]; };
   okcupiddata = derive2 { name="okcupiddata"; version="0.1.0"; sha256="1l04rr4yr73a6q2am9ylyr5prf347hkf2jx735w78rsb6472kbaq"; depends=[]; };
   okmesonet = derive2 { name="okmesonet"; version="0.1.5"; sha256="1kzyzmg702ayzphn9jsk64m51mlnz37ylxiwq5gsr23vaiida680"; depends=[plyr]; };
   olctools = derive2 { name="olctools"; version="0.3.0"; sha256="1gbchwynvmryarz32f24v56kj57h7x6nrrm878fkjkpq140cqwzz"; depends=[Rcpp]; };
@@ -9214,10 +9610,11 @@ in with self; {
   omics = derive2 { name="omics"; version="0.1-5"; sha256="1y2x33mfgq98nglhvpr1wq1v6nfiq4njy2yac47x72rpwxsj9vb1"; depends=[lme4 pheatmap]; };
   ompr = derive2 { name="ompr"; version="0.8.0"; sha256="1nmd5wa1g2xzmwqfqf882bxcrmkxbb5b414cbbzvmqzfs34yk6bl"; depends=[data_table lazyeval Matrix progress Rcpp rlang]; };
   ompr_roi = derive2 { name="ompr.roi"; version="0.8.0"; sha256="1cbrchvpd31lxpxvw2l3q9k5jmffarb1shca8kwm76y5a6zxxq63"; depends=[Matrix ompr ROI slam]; };
+  omu = derive2 { name="omu"; version="1.0.2"; sha256="03mj5xk447gadsnvqrm97cjcyfq4xzkgc46kw85gishv7w9qmqrk"; depends=[dplyr ggfortify ggplot2 KEGGREST magrittr plyr reshape2 stringr tidyr]; };
   oncomodel = derive2 { name="oncomodel"; version="1.0"; sha256="1jyyq9znffiv7rg26mjldbwc5yi2f4f8npsd2ykhxyacb3g96fp1"; depends=[ade4]; };
   onehot = derive2 { name="onehot"; version="0.1.1"; sha256="1cdsz007wr054k5phvihhg4qx0fc039k2s6484m92kws8mb2ziix"; depends=[]; };
   onemap = derive2 { name="onemap"; version="2.1.1"; sha256="0j9c0ynwpzyr548n72wzmmk8gi52qvxlxgzqzn8g6n4v5zmzlkhy"; depends=[fields ggplot2 maps Rcpp reshape2 tkrplot]; };
-  onewaytests = derive2 { name="onewaytests"; version="1.7"; sha256="1lly2pxw08mmm4gqgj3wxa9ayhf90fyqjhnj8hcvr408k9p7bgsb"; depends=[car ggplot2 moments nortest]; };
+  onewaytests = derive2 { name="onewaytests"; version="1.9"; sha256="15zs39krrf7i5g0bp830il3cihwbichsd6swhjxp53j77hwcb0hy"; depends=[car ggplot2 moments nortest]; };
   onion = derive2 { name="onion"; version="1.2-7"; sha256="17jx7saxcsahyyivln4v9fzzcmidy6ygjd9n81skv5jpr491zkgk"; depends=[]; };
   onlinePCA = derive2 { name="onlinePCA"; version="1.3.1"; sha256="08qivsfnwz5vp089lv9czsaz3nfi42kn9yhgzf27dji18y2xscic"; depends=[Rcpp RcppArmadillo RSpectra]; };
   onlineVAR = derive2 { name="onlineVAR"; version="0.1-0"; sha256="1hqriwrlxhbi5v5wpqxfvvcb6np1iaarb3zf84ykfzi4llqqgz24"; depends=[lattice]; };
@@ -9229,19 +9626,19 @@ in with self; {
   oompaBase = derive2 { name="oompaBase"; version="3.2.6"; sha256="0lighs2546nyhpgbjsn4k53c7jw6xyla5b82v8jp3l1sqxj68a3s"; depends=[cluster]; };
   oompaData = derive2 { name="oompaData"; version="3.1.1"; sha256="0by9qfxlx6fdmp12qnphlli5hdn5balvx4ckg64fw6vwa291g7b0"; depends=[]; };
   openCR = derive2 { name="openCR"; version="1.2.0"; sha256="1wz31rnvdz1s253krf423ipkmfsxia66d5adnbyp3r59mc48yh1k"; depends=[abind MASS nlme plyr R2ucare Rcpp RcppParallel secr stringr]; };
-  openEBGM = derive2 { name="openEBGM"; version="0.6.0"; sha256="0xzcdahfxdk1zjq6019yvr2mlhyqxbsqx6vd4w95mjq9h3bd5vmr"; depends=[data_table ggplot2]; };
+  openEBGM = derive2 { name="openEBGM"; version="0.7.0"; sha256="1a4jcc15995id2fh22v18f1wrwlknfx3mlh6chjl0b93z60aad6k"; depends=[data_table ggplot2]; };
   openNLP = derive2 { name="openNLP"; version="0.2-6"; sha256="1173cng877sg6ynbs3csfnn956wwrq3yldhhzfbqdsz35draganj"; depends=[NLP openNLPdata rJava]; };
   openNLPdata = derive2 { name="openNLPdata"; version="1.5.3-4"; sha256="0j45rh9qki8r5wavaysrfsvb3wc3x8jjicqff2yi0r34j58xvlv8"; depends=[rJava]; };
   openSTARS = derive2 { name="openSTARS"; version="1.1.0"; sha256="1cjws49r22cmdax136zcy3k35yzbajkm6pyfibgcw2iqdxy1vcxg"; depends=[data_table progress raster rgdal rgrass7 sf sp SSN]; };
-  openVA = derive2 { name="openVA"; version="1.0.4"; sha256="1lfc8h64y7zlcyf30pw0zrmzrjh4x4kkij0awmwwzhw402cvb16r"; depends=[ggplot2 InSilicoVA InterVA4 InterVA5 nbc4va Tariff]; };
+  openVA = derive2 { name="openVA"; version="1.0.7"; sha256="1hv0i2h9vw2l4gzsz31apc1w7k8rkrr5szxzfxhznchyv0sr9625"; depends=[cli crayon ggplot2 InSilicoVA InterVA4 InterVA5 purrr Tariff]; };
   openadds = derive2 { name="openadds"; version="0.2.0"; sha256="1jb8zd3rpxfkjkg895iab6m4cfi53p5vy3nnpjkgq7ym6499qjcv"; depends=[crul dplyr jsonlite maptools rappdirs readr tibble xml2]; };
-  openair = derive2 { name="openair"; version="2.4-2"; sha256="1kaq0ww3829qh6wsnaa2asyyqmqhdgm9am70g0vphf7lp9vjk9x1"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr RColorBrewer Rcpp rlang tidyr]; };
+  openair = derive2 { name="openair"; version="2.5-0"; sha256="1zsgqzp5rpyg4jr0vqk5jn1p0lba2lagsvw6idnwb1kjw82y82fd"; depends=[cluster dplyr hexbin lattice latticeExtra lubridate mapproj MASS mgcv purrr RColorBrewer Rcpp rlang tidyr]; };
   opencage = derive2 { name="opencage"; version="0.1.4"; sha256="1lqs38lml73axsjlsjkmcsb2irgs40mjrx2cn3k0bjb63qyb9hf5"; depends=[dplyr httr jsonlite memoise]; };
-  opencpu = derive2 { name="opencpu"; version="2.0.5"; sha256="1bs2z3y2zc3aqzfjh6bq3qrpzm106f5xhw7lbyng1bpcp4rch6y3"; depends=[brew curl devtools evaluate httpuv jsonlite knitr mime openssl protolite rappdirs sendmailR sys webutils zip]; };
+  opencpu = derive2 { name="opencpu"; version="2.0.8"; sha256="1x5z1galq8m45fr2jnik4gx28gn2cdwaj2871c7cx5rang6rv1jp"; depends=[brew curl devtools evaluate httpuv jsonlite knitr mime openssl protolite rappdirs sendmailR sys webutils zip]; };
   opendotaR = derive2 { name="opendotaR"; version="0.1.4"; sha256="17cygsw3nkg6zincfrcdh1509rlz3n5zrv9wvv7mjngm61sn79nf"; depends=[dplyr jsonlite lubridate]; };
   openintro = derive2 { name="openintro"; version="1.7.1"; sha256="059azlasdkmp8f54qpjf3mq5dyqakw0dgx0kx85wfdmhq38zal5n"; depends=[]; };
-  opensensmapr = derive2 { name="opensensmapr"; version="0.4.1"; sha256="1yq0fxlfb203di2y0n23zfy4xyjy1ij52s4kp1fn44pb3gmqhndm"; depends=[digest dplyr httr magrittr]; };
-  openssl = derive2 { name="openssl"; version="1.0.1"; sha256="1qyql5gpwf88bkm1qarjhbqbq4hn6w0d8j4pxb5x7i96is30ap30"; depends=[]; };
+  opensensmapr = derive2 { name="opensensmapr"; version="0.5.0"; sha256="0bv03p2fprgkqg2vm6ydqi5wjswkjlxwwmkk3r6lq2m4xq909d4r"; depends=[digest dplyr httr lazyeval magrittr purrr readr]; };
+  openssl = derive2 { name="openssl"; version="1.0.2"; sha256="1djfpnphkcxx8idk5rjfzg8r8dnqsgc0shh2pw8lns5hap2wc5rc"; depends=[]; };
   opentraj = derive2 { name="opentraj"; version="1.0"; sha256="13nqal96199l8vkgmkvl542ksnappkscb6rbdmdapxyi977qrgxk"; depends=[doParallel foreach maptools openair plyr raster reshape rgdal sp]; };
   openxlsx = derive2 { name="openxlsx"; version="4.1.0"; sha256="1n7z22pm78xa77fvn77kdn68az6xzxk36y11sqf0w6h6adri4yxb"; depends=[Rcpp zip]; };
   opera = derive2 { name="opera"; version="1.0"; sha256="0p2wg3srg088l420ykrq0wqvzh1mp6l753rdw35f7kdmaj08mqfq"; depends=[quadprog quantreg RColorBrewer]; };
@@ -9257,34 +9654,36 @@ in with self; {
   optbdmaeAT = derive2 { name="optbdmaeAT"; version="1.0.1"; sha256="1y1mvcyjihpj1wgjmifhmd10717wr1srp7h87azs4gfypgsiqchn"; depends=[igraph MASS Matrix]; };
   optextras = derive2 { name="optextras"; version="2016-8.8"; sha256="03wqz16q8kn0ndk241h541fa0g5y0nrfg17vph85cm5xvzdd14cc"; depends=[numDeriv]; };
   optiRum = derive2 { name="optiRum"; version="0.40.1"; sha256="1kl9mzh53pwhrxbn89dsjjpfji7k8vmysscd1qd9sw7vqdan8g6x"; depends=[AUC data_table ggplot2 knitr plyr scales stringr XML]; };
-  optiSel = derive2 { name="optiSel"; version="2.0.1"; sha256="0bk2yf7wlkf2v76dybcqvqjy6n4cr72h0l05yfxba3zl8fw7r7na"; depends=[data_table doParallel ECOSolveR foreach kinship2 magic MASS Matrix nadiv optiSolve pedigree plyr pspline purrr quadprog Rcpp RcppArmadillo reshape2 stringr]; };
+  optiSel = derive2 { name="optiSel"; version="2.0.2"; sha256="0k3651h7ih59w13jzkbh8m5pddi1g1zci5rn9dm3b873yjr2nalx"; depends=[data_table doParallel ECOSolveR foreach kinship2 magic MASS Matrix nadiv optiSolve pedigree plyr pspline purrr quadprog Rcpp RcppArmadillo reshape2 stringr]; };
   optiSolve = derive2 { name="optiSolve"; version="0.1"; sha256="1wnpj7z0vqf91gzgz6r2ympnljq4mczxnnyk3sq7gvf6df4ic2m1"; depends=[alabama cccp MASS Matrix nloptr plyr Rcpp Rcsdp shapes stringr]; };
   opticut = derive2 { name="opticut"; version="0.1-2"; sha256="1j479wa7mlp62c2y7shha1w7ybhfy8wvjfaz27kmwd1f61ma1g0l"; depends=[betareg MASS mefa4 pbapply pscl ResourceSelection]; };
   optifunset = derive2 { name="optifunset"; version="1.0"; sha256="18pvdl04ln1i0w30ljdb3k86j27zg2nvrn3ws54c1g6zg9haqhbg"; depends=[]; };
   optigrab = derive2 { name="optigrab"; version="0.7.3"; sha256="1vd4b6mh4a137nvsbpx71jibfd67va1m8iya1gasqiflm6qzszcx"; depends=[magrittr stringi]; };
   optim_functions = derive2 { name="optim.functions"; version="0.1"; sha256="1la3v8yd9cdichp3mka4x86hr9lynh6qfg7h9ab6cwijw6kzkn6g"; depends=[lhs randtoolbox stringr]; };
-  optimParallel = derive2 { name="optimParallel"; version="0.7-2"; sha256="1b705gn0f3m3cn1hy5ga6qazvl2kvgc9dmnqky2px1zbkw2n3qy0"; depends=[]; };
+  optimParallel = derive2 { name="optimParallel"; version="0.7-4"; sha256="0415lz5qrhb423h55plws1hjf1fsddg2qf9phm1srvd24dvz2khw"; depends=[]; };
+  optimStrat = derive2 { name="optimStrat"; version="1.1"; sha256="0wlkk0wmhzkxkam0d6lzr5s6hyb51fnvvd64syffgr084ivxymra"; depends=[shiny]; };
   optimbase = derive2 { name="optimbase"; version="1.0-9"; sha256="0ivz24kf3yacgq5bl3s3az1pcyhsz0cza5f8vdksy5gchwqplm8n"; depends=[Matrix]; };
   optimization = derive2 { name="optimization"; version="1.0-7"; sha256="09s62ax3w8zijfp2cmh2lvdqbl3nijbjkwq4n3icasi53lzg2179"; depends=[colorspace Rcpp]; };
   optimr = derive2 { name="optimr"; version="2016-8.16"; sha256="02dgwkcjhf6ciwb6x6gyk7nn4v2jras7l1icfd4pjbypiapwnck9"; depends=[numDeriv optextras Rcgmin Rvmmin setRNG]; };
   optimsimplex = derive2 { name="optimsimplex"; version="1.0-7"; sha256="1if32133556zwmijlz6085fg1h65442hy03lzia0ahap3yndqfqy"; depends=[optimbase]; };
   optimus = derive2 { name="optimus"; version="0.2.0"; sha256="01njyjfrm6kjwx2qq41c0hsgxzydnrmr3538cpbfdn5i0z5blgyx"; depends=[mvabund ordinal]; };
-  optimx = derive2 { name="optimx"; version="2013.8.7"; sha256="0pbd7s02isj24npi4m1m1f008xqwzvwp3kn472wz8nmy4zrid30s"; depends=[BB dfoptim minqa numDeriv Rcgmin Rvmmin setRNG svUnit ucminf]; };
+  optimx = derive2 { name="optimx"; version="2018-7.10"; sha256="0npzgb5ky3p2iky4917grmysawh7mb5gwz4i7ssmh73ypqnndfhk"; depends=[numDeriv]; };
   optional = derive2 { name="optional"; version="1.1"; sha256="13ajzybylw0q0x6yy6i8qr6l1ar53cyl708zgqaqaj0lkj183zhz"; depends=[magrittr]; };
   optiscale = derive2 { name="optiscale"; version="1.1"; sha256="1c263w9df66m7lgvzpdfm2zwx9nj8wcdpgh5gijachr2dzffmrp2"; depends=[lattice]; };
   optismixture = derive2 { name="optismixture"; version="0.1"; sha256="0nacfbqlnzajp1hfhf0yzm2d86fxpp4kw2zy33q8k2d4sr56bird"; depends=[Matrix mvtnorm]; };
-  optmatch = derive2 { name="optmatch"; version="0.9-9"; sha256="04w6ma1f09rjlz2qalfqk894pdkvqszr13n010y7015b3dsyqnkk"; depends=[digest Rcpp RItools survival]; };
+  optmatch = derive2 { name="optmatch"; version="0.9-10"; sha256="1jnvk9r7jc8w5rg8xvhbhj0wmy0l1hhjm8iwyf703939p4xc5z71"; depends=[digest Rcpp RItools survival]; };
   optparse = derive2 { name="optparse"; version="1.6.0"; sha256="1d7v5gl45x4amsfmzn5zyyffyqlc7a82h01szlnda22viyxids0h"; depends=[getopt]; };
   optpart = derive2 { name="optpart"; version="2.3-0"; sha256="125b9sfdk4bdcj1vq5rxlrskv1zra31x8d96pdxnqvcnkmwxm4zh"; depends=[cluster labdsv MASS plotrix]; };
   optrcdmaeAT = derive2 { name="optrcdmaeAT"; version="1.0.0"; sha256="16g4612mwyfsckn6l71fbrjnnjv4yvnac1cccbrn3k8jh07qgb1h"; depends=[igraph MASS Matrix]; };
-  optrdd = derive2 { name="optrdd"; version="1.0.1"; sha256="1nvrl04vg5ayrqqf6n3sb8jp37xifl5inh9nyr7pv6szckih6cd2"; depends=[CVXR Matrix quadprog]; };
+  optrdd = derive2 { name="optrdd"; version="1.0.2"; sha256="04c0dz68bs9h7l7bw9l0fahbbr2d0472xcq23pj91c8953n2mkak"; depends=[CVXR glmnet Matrix quadprog]; };
   optrees = derive2 { name="optrees"; version="1.0"; sha256="1zqpjii8dsfs98n58qpif81ckvyxkr0661svhlbgzi19xb2vszqs"; depends=[igraph]; };
+  optweight = derive2 { name="optweight"; version="0.2.0"; sha256="0qpm5i9anzmv03cgdpk3r7pr6gg9l32hrnbrrd65cmkvf5wdxcyj"; depends=[ggplot2 Matrix rosqp]; };
   opusminer = derive2 { name="opusminer"; version="0.1-0"; sha256="1m4gsjylz58pbmhgcy4l9hqdsgy8ra1zg0d3rb6h2qiwfyfm0yh4"; depends=[arules Matrix Rcpp]; };
   orQA = derive2 { name="orQA"; version="0.2.1"; sha256="0vivjrpcbql42y078gi91kfpfdpv73j23jkiv8fpazzwzdi8ydqq"; depends=[genefilter gtools nlme Rcpp]; };
   ora = derive2 { name="ora"; version="2.0-1"; sha256="0albxqma220rnrpfdq3z9cawr83q1a0zzczbbcy4nijjm4mswphy"; depends=[DBI ROracle]; };
   orca = derive2 { name="orca"; version="1.1-1"; sha256="1wd5nh2vh6j1rp78hbw17qipi67f0wimrbkiarak8f7k5pfiy1zn"; depends=[]; };
   orclus = derive2 { name="orclus"; version="0.2-6"; sha256="0d78mn2vl2yxlvdswyxkxp9zg59b8cvfksz9m56kddn79aps1ikl"; depends=[]; };
-  orcutt = derive2 { name="orcutt"; version="2.2"; sha256="0mwfbbsn39nla083p845xbbgh3y8kkrg0q735kap64jf4pgcyac7"; depends=[lmtest]; };
+  orcutt = derive2 { name="orcutt"; version="2.3"; sha256="0pj7pqzbcg4gp35nsz3avyawmx69dgj0l2w0x8ypw5qwl4zhmnyk"; depends=[lmtest]; };
   ordBTL = derive2 { name="ordBTL"; version="0.8"; sha256="09x3zfmss4fsh3rjghgmpv8y34dnkz4mw696b3k3nvlgk55a1423"; depends=[caret gtools VGAM wikibooks]; };
   ordDisp = derive2 { name="ordDisp"; version="1.0.1"; sha256="1vjki73h8933z36ikwmjn84ldz154mahp2jkd9cbj5n6xsi47fnw"; depends=[VGAM]; };
   ordPens = derive2 { name="ordPens"; version="0.3-1"; sha256="0yzf3qzi4p7xqimihjvr0wkdvj3sy9n3wc86bf4bjbavniq6m69r"; depends=[grplasso mgcv RLRsim]; };
@@ -9294,22 +9693,22 @@ in with self; {
   orderedLasso = derive2 { name="orderedLasso"; version="1.7"; sha256="0vrh89nrmpi8xscvambcb1y70gqqi5819a2gxh02h4pnyjn8axql"; depends=[ggplot2 Iso Matrix quadprog reshape2]; };
   orderstats = derive2 { name="orderstats"; version="0.1.0"; sha256="0a3ga0cjryvbininspsx5wzc96s3fza06s3d5fhbllbixz0rap4a"; depends=[]; };
   ordiBreadth = derive2 { name="ordiBreadth"; version="1.0"; sha256="04faqhas1p9lxhghd4xq07yq1nxv7ns18avhvkql7sy5a9g7bfs1"; depends=[vegan]; };
-  ordinal = derive2 { name="ordinal"; version="2018.4-19"; sha256="04fpm4jsjfd90ig2rzd11jafkip74814b60ixis0sii2gr9c8zxb"; depends=[MASS Matrix ucminf]; };
-  ordinalClust = derive2 { name="ordinalClust"; version="1.2.1"; sha256="1035471ni5f8129w23kkj7263p5pa9jlihqdq2skda410lj50vnk"; depends=[progress Rcpp RcppArmadillo]; };
+  ordinal = derive2 { name="ordinal"; version="2018.8-25"; sha256="03cv9hcrw8j3lhamzhz8sk2p3ns4cw9z41x49h301k2b3pajv43h"; depends=[MASS Matrix numDeriv ucminf]; };
+  ordinalClust = derive2 { name="ordinalClust"; version="1.3.1"; sha256="10wk2brp8a3k1pjsl7wify4ki59ad4vbpqgmbi5va99hfnywz5ml"; depends=[Rcpp RcppArmadillo RcppProgress]; };
   ordinalCont = derive2 { name="ordinalCont"; version="1.3.0"; sha256="0zi9cfvkb811hhcplp159zpnmmk4rs0nid19gi4g9g3dgn9pa296"; depends=[boot]; };
-  ordinalForest = derive2 { name="ordinalForest"; version="2.1"; sha256="1ancr7xdwhbqq3rj5hijrkjbrcaih8rqcx5r41mykrrp1k1s55dd"; depends=[combinat ggplot2 Rcpp]; };
-  ordinalNet = derive2 { name="ordinalNet"; version="2.4"; sha256="0c9k3p62d482sl0vg94xm6hllk2mic2nd1c5m4vhci5ycavqzdd3"; depends=[]; };
+  ordinalForest = derive2 { name="ordinalForest"; version="2.2"; sha256="1cfcdk7nndw7z1shq966pdk6448hdvfqc6c1z4fwrrlkp75gnjr5"; depends=[combinat ggplot2 nnet Rcpp]; };
+  ordinalNet = derive2 { name="ordinalNet"; version="2.5"; sha256="1lx8jacidb6irwb2mwsc75dy90fnvrpgwcg8s2wzkvql1lasc6wy"; depends=[]; };
   ordinalRR = derive2 { name="ordinalRR"; version="1.0"; sha256="07gihg8hppxa7bp5wxcshqawj3vkzicmdsrnjyrasr3glv08b9lj"; depends=[rjags]; };
-  ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.4"; sha256="1s8f8fpiyyxxqlcwa5pn2aj1iggf5r1q7zkvzsik6265krcsbqn6"; depends=[survival]; };
-  ore = derive2 { name="ore"; version="1.6.1"; sha256="0hy1xm03zbmd336g9jjrkdsx1z7ai32jvj1hk8a7bj9wqb5rl8g5"; depends=[]; };
+  ordinalgmifs = derive2 { name="ordinalgmifs"; version="1.0.5"; sha256="0i66i0qwsc52yj4hpfzk4d8v2nwdd4zr7zgqlxvsk3n8vi65lnqf"; depends=[survival]; };
+  ore = derive2 { name="ore"; version="1.6.2"; sha256="1l1ziljgm5gwjhvjq42wi5vcwbxlaj5dl9w8bhz0wh8vx4ajj07m"; depends=[]; };
   ores = derive2 { name="ores"; version="0.3.1"; sha256="12war455cfcn2llig7pkx05b70dp5y7warjq03ayqq6i7c945mhb"; depends=[httr]; };
   orgR = derive2 { name="orgR"; version="0.9.0"; sha256="1q4qbwnbhmja8rqiph7g7m4wxhzhk9mh91x1jgbnky8bs4ljdgrx"; depends=[data_table ggplot2 ggthemes lubridate stringr]; };
   orgutils = derive2 { name="orgutils"; version="0.4-1"; sha256="1yc3avhq3786his7nd60zfbzd9inkfrfz938r8378z59zbb1mzqq"; depends=[textutils]; };
   orientlib = derive2 { name="orientlib"; version="0.10.3"; sha256="1qi46hkz73b8722zc3w6wvsq1ydlk37yxn9rd1dqygqbs1svkmvv"; depends=[]; };
   origami = derive2 { name="origami"; version="1.0.0"; sha256="0692n4javr0lwxcd0b83sbbhxbmxxs41sjvlsq5bc5l7n140qaca"; depends=[abind data_table future future_apply listenv]; };
   originr = derive2 { name="originr"; version="0.3.0"; sha256="1r4w8gilr25gdqm3slviwas3s7qkpiyv4ifzp7qkby6vrdswnngb"; depends=[crul data_table jsonlite taxize xml2]; };
-  orloca = derive2 { name="orloca"; version="4.5"; sha256="1zkd80b8rqy3x389c5pwsh0k8q6hy9bg4vvqs2xigxbprz4gyzl7"; depends=[png ucminf]; };
-  orloca_es = derive2 { name="orloca.es"; version="4.5"; sha256="0lnv565c7g69649481w3rlnx0yya7bw9fkpwim9bs639flwh6w96"; depends=[orloca]; };
+  orloca = derive2 { name="orloca"; version="4.6"; sha256="1mhm4m0qmhhb1kca2s5z630f52h3a5ms16aqxrq9a8j9nyd65xh4"; depends=[knitr png ucminf]; };
+  orloca_es = derive2 { name="orloca.es"; version="4.6"; sha256="1yfsvihm8p4ggdfam50i2xg7dy7khww5qqk6g4lry3m1icwx6vsy"; depends=[orloca]; };
   oro_dicom = derive2 { name="oro.dicom"; version="0.5.0"; sha256="05dmhfglp76apyilwicf3n2ylyjhp1gq6b9bnzsiiblpjnfpia43"; depends=[oro_nifti]; };
   oro_nifti = derive2 { name="oro.nifti"; version="0.9.1"; sha256="19w9dzyfmfgxgxb5i0l06b6gzqksx879iwicfs76fwmb1q2ph540"; depends=[abind bitops RNifti]; };
   oro_pet = derive2 { name="oro.pet"; version="0.2.6"; sha256="1dczii7knh9241ksswxk9zg1d69mhk2ilrk4kjv7cj9nfm8fgmja"; depends=[minpack_lm msm oro_dicom oro_nifti]; };
@@ -9323,10 +9722,10 @@ in with self; {
   osd = derive2 { name="osd"; version="0.1"; sha256="1py9p15nrcydr8w9ilxkxabiz9zlqnls8xn9avjkxd8x6602jx6p"; depends=[JADE nnls]; };
   oshka = derive2 { name="oshka"; version="0.1.2"; sha256="02hglpq5lknq93zbcf219lhnhppzgygkhxqixb15f89rxf9fczgs"; depends=[]; };
   osmar = derive2 { name="osmar"; version="1.1-7"; sha256="0q6d8nw7d580bnx66mjc282dx45zw9srczz90b520hjcli4w3i3r"; depends=[geosphere RCurl XML]; };
-  osmdata = derive2 { name="osmdata"; version="0.0.7"; sha256="0gpb8anvm9wmhvdkirhclkyppqz1sd5siclszigff11fw4bxnwj3"; depends=[curl httr jsonlite lubridate magrittr Rcpp rvest sp xml2]; };
+  osmdata = derive2 { name="osmdata"; version="0.0.8"; sha256="0hhfnraxjj54z5p3lnpvklhpmdhihs9lgfb9dm3s9h7kjcknf6x3"; depends=[curl httr jsonlite lubridate magrittr Rcpp rvest sp xml2]; };
   osmose = derive2 { name="osmose"; version="0.1.1"; sha256="0fiijnrvvydhj6j9yb02rn5sg8arcpj3jz977m2zwjgqy878cffg"; depends=[rlist stringr]; };
   osmplotr = derive2 { name="osmplotr"; version="0.3.0"; sha256="0w45riwwjigh1bxf9gx0wdj2yhdizwi6ydprp83pss2z9wph66yb"; depends=[curl e1071 ggm ggplot2 httr osmdata rgeos sp spatstat]; };
-  osqp = derive2 { name="osqp"; version="0.3.1"; sha256="1q7f009xbl15prsn6l18fr307a7z76rw39z6fj380nliq6s5s56z"; depends=[Matrix R6 Rcpp]; };
+  osqp = derive2 { name="osqp"; version="0.4.1"; sha256="0v1sg914l1xz2f2crgwy2pp9k72ak2k1qmqix20j2akqmlvr39p2"; depends=[Matrix R6 Rcpp]; };
   osrm = derive2 { name="osrm"; version="3.1.1"; sha256="14rf5m2pm5w414v2l1dvd6vlvirms93l8rkfbmgcvxwxmc52b187"; depends=[gepaf jsonlite raster RCurl rgeos sp]; };
   osrmr = derive2 { name="osrmr"; version="0.1.29"; sha256="1mkc39v56m7b89nbjzs50kzz8w1i1950gciiw7iyqpdj6g2knwdx"; depends=[assertthat bitops R_utils rjson stringr]; };
   otinference = derive2 { name="otinference"; version="0.1.0"; sha256="1l75jjnkyk8yzaw9zyk45jq9ys304i6pzm2xd5apxrb1jk75a3li"; depends=[MASS Rglpk sm transport]; };
@@ -9337,12 +9736,14 @@ in with self; {
   outbreaker = derive2 { name="outbreaker"; version="1.1-8"; sha256="0przz78jzkwl580w83p0aigaykfki2hdzprwqic7dy6yxnpqlpm3"; depends=[adegenet ape igraph]; };
   outbreaker2 = derive2 { name="outbreaker2"; version="1.0.1"; sha256="1v49i9z4kx9l485ib5q91s4z6r03lyijzjrr9zyjgham59rncyij"; depends=[ape ggplot2 magrittr Rcpp visNetwork]; };
   outbreaks = derive2 { name="outbreaks"; version="1.3.0"; sha256="1k0g9x6wvdw8lkpjiv8z1ijp6pg5hri3gawx7zfpnm05g6ncvg81"; depends=[]; };
+  outcomerate = derive2 { name="outcomerate"; version="1.0.1"; sha256="07mwml7r98qjgvrp938sqf7klyspz110583j0zwb72j69n4whmrj"; depends=[Rdpack]; };
   outliers = derive2 { name="outliers"; version="0.14"; sha256="0vcqfqmmv4yblyp3s6bd25r49pxb7hjzipiic5a82924nqfqzkmn"; depends=[]; };
   outreg = derive2 { name="outreg"; version="0.2.2"; sha256="04f1x7mxq4swbd7bfwjjgx4838jm6qj4piaighmhcscwrdkxa1cp"; depends=[magrittr reshape2 sandwich stringr tidyr]; };
   overlap = derive2 { name="overlap"; version="0.3.2"; sha256="1j3m6ir1chdz0si2fhcw6gs7c9h09bv0chz18rpzxsywww6d4rzy"; depends=[]; };
   overlapping = derive2 { name="overlapping"; version="1.5.0"; sha256="1xqpkyxpdzcvq7s2hzkbnfddffjfs1xrxhrkvl5i4qv1czdsphjn"; depends=[ggplot2]; };
   overlapptest = derive2 { name="overlapptest"; version="1.0"; sha256="1p5xbqbl1kpvx7rjb335k7hfc8i9b13p2r2rr6rrjfa8zs74smml"; depends=[spatstat]; };
   owmr = derive2 { name="owmr"; version="0.7.2"; sha256="0206i5zzmfjdd43qziis6kqc0zsvn0l7v5sspjrywjxw2gyjfmwb"; depends=[httr jsonlite magrittr]; };
+  ows4R = derive2 { name="ows4R"; version="0.1-0"; sha256="1a27h63spy46ms7fgh2vl659znp5g55d1hsk6py6lgfa6hc2f1dx"; depends=[geometa httr openssl R6 rgdal sf XML]; };
   oxcAAR = derive2 { name="oxcAAR"; version="1.0.0"; sha256="19inf2bcpfj4jzfym1v5f1w5fkmcycz5jrfc2hf0wsvixy53lfxa"; depends=[jsonlite stringr]; };
   oz = derive2 { name="oz"; version="1.0-21"; sha256="0p4r8qbpv7q6vad940540pd3lk79pyfj41h2cn22hsy1j0va1qbv"; depends=[]; };
   p2distance = derive2 { name="p2distance"; version="1.0.1"; sha256="1ims8i5z5k97kjpdysgx8g7lgvnvf7amahcrssw7bk38bvbxawni"; depends=[]; };
@@ -9352,10 +9753,11 @@ in with self; {
   pCalibrate = derive2 { name="pCalibrate"; version="0.1-1"; sha256="04a7dmf9sjw44y53i469f8fjm8as2vwr0pgk4s91l63pxdqnjvfl"; depends=[epitools exact2x2 MCMCpack]; };
   pGLS = derive2 { name="pGLS"; version="0.0-1"; sha256="1rlk8q09sikf4vpzsx0c7s6qqh2hxf8dy2bgcm4nnkbv2nfjz438"; depends=[MASS]; };
   pGMGM = derive2 { name="pGMGM"; version="1.0"; sha256="1hkczz38g8a8253jm8vhm8948fs91g6b2rfzkz47srkkby9ksa4x"; depends=[JGL MASS mvtnorm]; };
+  pGPx = derive2 { name="pGPx"; version="0.1.1"; sha256="0b3pjrk7496nlw1cv5m6yfp02c663452z67y21yhhm26b17nrldv"; depends=[DiceKriging KrigInv pbivnorm pracma randtoolbox Rcpp RcppArmadillo rgenoud]; };
   pKSEA = derive2 { name="pKSEA"; version="0.0.1"; sha256="1k9javxbhx28hf5k3i66ggqwlws2w9qwp01g8f7jmyp92pxr3qqd"; depends=[]; };
   pMineR = derive2 { name="pMineR"; version="0.31"; sha256="1j71dcldzmk4kzspx4v5s3vqqkllgwkckfm1g145qgg26c1gyc6l"; depends=[cluster DiagrammeR stringr XML]; };
   pRF = derive2 { name="pRF"; version="1.2"; sha256="17srabk7mam16rdzc5g9ggdrhjjk8wibny40gxvgzkv7qgq7m80x"; depends=[dplyr ggplot2 multtest permute randomForest reshape2]; };
-  pROC = derive2 { name="pROC"; version="1.12.1"; sha256="05ad69a6fxy9k903cw3h4q59ch2jv6qfg9yjdbw3cgiiazcafrlj"; depends=[ggplot2 plyr Rcpp]; };
+  pROC = derive2 { name="pROC"; version="1.13.0"; sha256="0ain17clympkx09ym7gydylcd93096dxzqx1qzci310yq2l7fknm"; depends=[ggplot2 plyr Rcpp]; };
   pRSR = derive2 { name="pRSR"; version="3.1.1"; sha256="1irx95b7cwvx3gpn9brjjn4k947m8frz542r18nilc9f1159mb3s"; depends=[]; };
   pSI = derive2 { name="pSI"; version="1.1"; sha256="0cvw38dqqlyx7cpl27hq33f5xns2d0019lyr98pwndcnbp09mx0b"; depends=[gdata]; };
   pa = derive2 { name="pa"; version="1.2-1"; sha256="1pfgzxirkb0p8f6smjlrbp1qpsh0vsvqf306cvldaj9zx8cw0q9f"; depends=[ggplot2]; };
@@ -9367,9 +9769,9 @@ in with self; {
   packagedocs = derive2 { name="packagedocs"; version="0.4.0"; sha256="0zw9ana7s42ardphhdaklba02yjj1v8gliq4l98397mjmzc6f4xd"; depends=[crayon devtools digest evaluate highlight htmltools lazyrmd magrittr rmarkdown stringr whisker yaml]; };
   packagefinder = derive2 { name="packagefinder"; version="0.0.7"; sha256="030s8r2k0q3vls6vndmdz8a45kqrqx9whqvrcbh3f6xgy1vhs1hs"; depends=[formattable httr jsonlite pander stringr]; };
   packagetrackr = derive2 { name="packagetrackr"; version="0.1.1"; sha256="0xjq27j7bd7lps0vp9gdinxn19wl10k2cp9wb2xjih7p6l0wd57g"; depends=[dplyr httr magrittr rappdirs]; };
-  packcircles = derive2 { name="packcircles"; version="0.3.2"; sha256="1hqzvhk8zm95vsrvf6bifxkgdgik8hixylslfvzpfcq378zi97yb"; depends=[Rcpp]; };
+  packcircles = derive2 { name="packcircles"; version="0.3.3"; sha256="0gik0splf48zfl40297nh7lbgvd2qqlci99wv841mfy7858ai933"; depends=[Rcpp]; };
   packrat = derive2 { name="packrat"; version="0.4.9-3"; sha256="0d42x4qvz9hs7s5sl2lhklsdc8imrnp2k800xdagrpjilww9jac7"; depends=[]; };
-  pacman = derive2 { name="pacman"; version="0.4.6"; sha256="1vdak1hv3j44dsj6cckzc1a86dg933jqhxdys8fyxacmk101l388"; depends=[devtools]; };
+  pacman = derive2 { name="pacman"; version="0.5.0"; sha256="0gb0fsm8rm81j22q93fqx8q6zgjq3w1pv791ac0smc1a45blfab1"; depends=[remotes]; };
   paco = derive2 { name="paco"; version="0.3.2"; sha256="0qf692fqlq0d7hh9yllywaswmj5spy6q1r67nzkhgyh311nhjh6c"; depends=[plyr vegan]; };
   pacotest = derive2 { name="pacotest"; version="0.3"; sha256="135637bidfx71xay6c69lfjvr4i0v3ckgkg0fi838p24is6icbix"; depends=[ggplot2 gridExtra numDeriv Rcpp RcppArmadillo VineCopula]; };
   pact = derive2 { name="pact"; version="0.5.0"; sha256="043hbydj5f6889xrfsrn8jrgid2nnbsz6d7jpn4hywwa97snw4ny"; depends=[glmnet survival]; };
@@ -9378,6 +9780,7 @@ in with self; {
   pafdR = derive2 { name="pafdR"; version="1.0"; sha256="1yimsd4h23hcf752p5flda3dqk8hgn6qm9k0pmbapxj4jbsw14w5"; depends=[curl exams stringr]; };
   pagenum = derive2 { name="pagenum"; version="1.1"; sha256="0908rlr9sd1a2qwz0idw8ccxhji73sk24gyrdl071lpnd1rs2wl7"; depends=[]; };
   pageviews = derive2 { name="pageviews"; version="0.3.0"; sha256="031y67nqqvf3fa2273m7z2cldda0ijh63qwkh4gis3hz9hfril0v"; depends=[curl httr jsonlite]; };
+  painter = derive2 { name="painter"; version="0.1.0"; sha256="0qr6p13h50rlavcsamxmijfr4dfrbv1k088m28qf8a4gam3ap85b"; depends=[]; };
   paintmap = derive2 { name="paintmap"; version="1.0"; sha256="1qw5725yjymxmfhffqjx4lbmzj437c7qwr8xrzmf52f0m28nl3vk"; depends=[]; };
   pairedCI = derive2 { name="pairedCI"; version="0.5-4"; sha256="03wf526n3bbr2ai44zwrdhbfx99pxq1nbng9wsbndrdg2ji4dar2"; depends=[]; };
   pairheatmap = derive2 { name="pairheatmap"; version="1.0.1"; sha256="1awmqr5n9gbqxadkblpxwcjl9hm73019bwwfwy1f006jpn050d6l"; depends=[]; };
@@ -9385,13 +9788,14 @@ in with self; {
   pairwise = derive2 { name="pairwise"; version="0.4.3-2"; sha256="1kb73jsfyp1daqbrmpwh8l9j28fgiapimfwdypz82m46wza1qgww"; depends=[]; };
   pairwiseCI = derive2 { name="pairwiseCI"; version="0.1-26"; sha256="0dislkyvzckkxl2ccdpalyfbp4pfs6yvzwr175h2xcbzm5jjf35j"; depends=[boot coin MASS MCPAN mcprofile]; };
   palaeoSig = derive2 { name="palaeoSig"; version="1.1-3"; sha256="1zm8xr7fpnnh6l4421vjavi6bg44iars3mna4r5fw3spmbswyv7b"; depends=[MASS mgcv rioja TeachingDemos vegan]; };
-  palasso = derive2 { name="palasso"; version="0.0.1"; sha256="00vwp0xbnp8fj8g7qn81r4j15vwp26pjjh51hc8syi8l7457alhm"; depends=[glmnet Matrix survival]; };
+  palasso = derive2 { name="palasso"; version="0.0.2"; sha256="19syj2qlmnrbz75hhlrslh04k8cmi3bh8r15yq8gwy1mr9kwq3i3"; depends=[CorShrink glmnet Matrix survival]; };
   paleoMAS = derive2 { name="paleoMAS"; version="2.0-1"; sha256="1hhb5wbj4m3ch8wnvd1zkl5bk6wa9nl6jl1dhm4z6yqkh29yn9z6"; depends=[lattice MASS vegan]; };
   paleoTS = derive2 { name="paleoTS"; version="0.5-1"; sha256="18f5lkgzvndc8s7w7d7dfdlqf37adrmzabpwkavjw1zkpb1dga8c"; depends=[doParallel foreach iterators mnormt]; };
   paleobioDB = derive2 { name="paleobioDB"; version="0.5.0"; sha256="195w0jzg8bhlqbsd3shi161wqr9cff6q85ik0x8w4laazzxs0jhr"; depends=[gtools maps plyr raster RCurl rjson scales]; };
   paleofire = derive2 { name="paleofire"; version="1.2.2"; sha256="0mg03k3yf68js580ljvwcn7xfl0m1s408hb34a9h3mh3a5knm2zc"; depends=[GCD ggplot2 lattice locfit plyr raster rgdal]; };
   paleomorph = derive2 { name="paleomorph"; version="0.1.4"; sha256="05l55miahkmj8ikq8qz20y6kgxvxmdf04kji898i7fp8qyj4vfpa"; depends=[]; };
-  paleotree = derive2 { name="paleotree"; version="3.1.0"; sha256="1f90f6m6qgywxa134dv8rd43660vkr9n2s82wn0iwq7w89gqlcj2"; depends=[ape phangorn phytools]; };
+  paleotree = derive2 { name="paleotree"; version="3.1.3"; sha256="05669s0lmd9azzpgn5iqayp49lg6sn34z4bqizcbpjviw6jwh72c"; depends=[ape phangorn phytools]; };
+  paletteer = derive2 { name="paletteer"; version="0.1.0"; sha256="02d0k74bxdjphw34v4vvnc2dd04cvm9y6m0x8ngfhqmgv4nfsjx9"; depends=[ggthemes jcolors oompaBase palr pals rlang scico viridisLite]; };
   palettetown = derive2 { name="palettetown"; version="0.1.1"; sha256="1kjj1sqib1ns7895plp8c7h317pxwbyxi2shjkcgadkcsv2yjsxn"; depends=[]; };
   palinsol = derive2 { name="palinsol"; version="0.93"; sha256="0k29sl2j7yf4yc0dhb047rxwg9np9l6pdwv6wyb4j80yc07vc9am"; depends=[gsl]; };
   palm = derive2 { name="palm"; version="1.1.1"; sha256="1fbc5ri5k152ww3cajjjclcas22mfvypfn3hdpkkmf307lvjaja3"; depends=[gsl minqa mvtnorm R6 Rcpp spatstat]; };
@@ -9403,18 +9807,18 @@ in with self; {
   pampe = derive2 { name="pampe"; version="1.1.2"; sha256="092n04nrp886kd163v32f5vhp9r7gnayxzqb6pj57ilm5w1yrcsk"; depends=[leaps]; };
   pamr = derive2 { name="pamr"; version="1.55"; sha256="1hy3khb0gikdr3vpjz0s245m5zang1vq8k93g7n9fq3sjfa034gd"; depends=[cluster survival]; };
   pan = derive2 { name="pan"; version="1.6"; sha256="1dk3jjj826p7xrz10qz04vyc068xnypg7bp0pj4c32z3da0xzh5d"; depends=[]; };
-  pander = derive2 { name="pander"; version="0.6.1"; sha256="1axknd1isfjg4wj5b1smvl7qr4wvjdw1kikrghjnp73xh0glr7pp"; depends=[digest Rcpp]; };
+  pander = derive2 { name="pander"; version="0.6.2"; sha256="0gd7rqkpbraznip8jmri9lqa8ajg1sryyplhd6m633wg91whiipi"; depends=[digest Rcpp]; };
   pandocfilters = derive2 { name="pandocfilters"; version="0.1-1"; sha256="18n155rkbr3gq5lsb0bh1v1v0z0r6xr2ald3nh7xh3v9qwxpmsz1"; depends=[jsonlite]; };
   panelAR = derive2 { name="panelAR"; version="0.1"; sha256="1ka2rbl9gs65xh2y2m4aqwh5qj4szibjy101hqfmza9wmdh25gpq"; depends=[car]; };
-  panelView = derive2 { name="panelView"; version="1.0.1"; sha256="1ianff9clc0318nk0xplnslfqi5sxn773qcvxv3axj247994xpay"; depends=[ggplot2 gridExtra]; };
+  panelView = derive2 { name="panelView"; version="1.0.5"; sha256="1hmb311qimm60l9zvk0nkgh4qy2givm8a8rdmmpfb9bfbbg6clks"; depends=[ggplot2 gridExtra]; };
   panelaggregation = derive2 { name="panelaggregation"; version="0.1.1"; sha256="0x8ldqb9216pclfvs4ymdpian43v2ydkyflpf0k6lcn35r04xfr6"; depends=[data_table]; };
   panelvar = derive2 { name="panelvar"; version="0.5.1"; sha256="1394lvvpzbcvm2mhxw68k784jyvsnzxiq787kdf4y4538lqgfx1n"; depends=[ggplot2 knitr MASS Matrix matrixcalc progress reshape2 texreg]; };
   pangaear = derive2 { name="pangaear"; version="0.6.0"; sha256="0dykacf5ckhck08rbk6l5kyw51i2p1ncy44agcxj79cr290cd5ck"; depends=[crul jsonlite oai png rappdirs tibble xml2]; };
   papayar = derive2 { name="papayar"; version="1.0"; sha256="11vkjhazfwfixsr6dba5jrcsr3r3mqgvj5s070b4gp70d6k1z8s5"; depends=[htmltools neurobase oro_nifti servr]; };
-  papeR = derive2 { name="papeR"; version="1.0-2"; sha256="1pp6zzdqg9lj61f8p90sxl30vp9knmis7154fmfpm6pynbgr46ms"; depends=[car gmodels xtable]; };
+  papeR = derive2 { name="papeR"; version="1.0-3"; sha256="0c3zziy32wnpvnv7d3kh1gs24pmy9ap2hq0l3ss2h79s5vmc76xi"; depends=[car gmodels xtable]; };
   paperplanes = derive2 { name="paperplanes"; version="0.0.1.9"; sha256="1d9grc95xqxn91lvk8v7w3z90bhl8savkhihwshyjp8ij2xpzfkl"; depends=[]; };
   parSim = derive2 { name="parSim"; version="0.1"; sha256="15d3k91mvbv2hmq0l1jfr0hsv2zkz3cr6axg85kf9bd9q79b85qp"; depends=[dplyr]; };
-  parallelDist = derive2 { name="parallelDist"; version="0.2.1"; sha256="1w6c5ijnynqq7q15f5mflmxcad6yblpdaflh378lf9vm2xdq0yjp"; depends=[Rcpp RcppArmadillo RcppParallel]; };
+  parallelDist = derive2 { name="parallelDist"; version="0.2.2"; sha256="0h7bf2mlfpydqr3msirg07wn041fqlcdha9m8rybix1x3vi778qc"; depends=[Rcpp RcppArmadillo RcppParallel]; };
   parallelMCMCcombine = derive2 { name="parallelMCMCcombine"; version="1.0"; sha256="05krkd643awqhfrylq9lxr2cmgvnm1msn2x8p1l1483n2gzyklz7"; depends=[mvtnorm]; };
   parallelML = derive2 { name="parallelML"; version="1.2"; sha256="05j0rb81i8342m8drwgmgi1w30q96yf501d83cdq4zhjbchphbl1"; depends=[doParallel foreach]; };
   parallelMap = derive2 { name="parallelMap"; version="1.3"; sha256="026d018fr2a43cbh8bi2dklzr9fxjzdw5qyq84g2i18v5ibr6bd5"; depends=[BBmisc checkmate]; };
@@ -9424,7 +9828,7 @@ in with self; {
   paramlink = derive2 { name="paramlink"; version="1.1-2"; sha256="0y6wsrxwyavipmrjjznr2n920w0p6qlwapxc9mnkh9c6w3yznka2"; depends=[assertthat kinship2 maxLik]; };
   params = derive2 { name="params"; version="0.6.1"; sha256="0w7k8k7z8p1y2w0dhpfssa868xaikfzfdjw2vlj1yl299k5yisax"; depends=[whisker]; };
   paramtest = derive2 { name="paramtest"; version="0.1.0"; sha256="0yn1s1qkgby8x0qn7cy1zhxzc0wyi7bm30pkvijhn5h5afjpylsy"; depends=[boot]; };
-  paran = derive2 { name="paran"; version="1.5.1"; sha256="0nvgk01z2vypk5bawkd6pp0pnbgb54ljy0p8sc47c8ibk242ljqk"; depends=[MASS]; };
+  paran = derive2 { name="paran"; version="1.5.2"; sha256="0d9la83mxfpfgdfrqa40ck5fcp3j2b70d8c8nl9wmdsgvgqrl23s"; depends=[MASS]; };
   parboost = derive2 { name="parboost"; version="0.1.4"; sha256="087b4as0w8bckwqpisq9mllvm523vlxmld3irrms13la23z6rjvf"; depends=[caret doParallel glmnet iterators mboost party plyr]; };
   parcor = derive2 { name="parcor"; version="0.2-6"; sha256="10bhw50g8c4ln5gapa7wghhb050a3jmd1sw1d1k8yljibwcbbx36"; depends=[Epi GeneNet glmnet MASS ppls]; };
   parfm = derive2 { name="parfm"; version="2.7.5"; sha256="1wnklksqybhaqwsfifwv8gmqjl6g9dm9s4z131mbjn4dm7bj1bra"; depends=[msm optimx sn survival]; };
@@ -9432,21 +9836,22 @@ in with self; {
   parlitools = derive2 { name="parlitools"; version="0.2.1"; sha256="14nzcbjddwnsiwwksl7bf2qk1kzzcnjc0b47ilqiq4nc4c386im3"; depends=[dplyr hansard httr jsonlite mnis sf stringi tibble]; };
   parma = derive2 { name="parma"; version="1.5-3"; sha256="0yjpmxz20v6k107qylw42yf1b231hzym9dizjcq1kalivvscczc5"; depends=[corpcor nloptr quadprog Rglpk slam truncnorm]; };
   parmigene = derive2 { name="parmigene"; version="1.0.2"; sha256="1fsm6pkr17jcbzkj1hbn91jf890fviqk1lq6ls8pihsdgah1zb4d"; depends=[]; };
+  parmsurvfit = derive2 { name="parmsurvfit"; version="0.0.1"; sha256="0sgs2gk2592ly2jkvfnhjcwfxhhwk7758hfnxi6id83aca6l52wm"; depends=[fitdistrplus flexsurv ggplot2]; };
   parsec = derive2 { name="parsec"; version="1.2.0"; sha256="0ilc9d6kv7zb0kwhpqqi3bjx3r1cihyfamphrw83p6zy3xhfmfs6"; depends=[igraph]; };
   parsedate = derive2 { name="parsedate"; version="1.1.3"; sha256="0mg7hbm3903iwvmpn51gjpaaq03rsp72hjb1g8h5g84r81iha002"; depends=[]; };
   parsemsf = derive2 { name="parsemsf"; version="0.1.1"; sha256="0ks4503k06ib5lq4ar2rg0sdni99rjcqxj76b0mclasxbi07kjsa"; depends=[DBI dbplyr dplyr lazyeval RSQLite stringr tidyr]; };
   partDSA = derive2 { name="partDSA"; version="0.9.14"; sha256="1kp0cdsdjiay349jz22iqfzvspny8s343cfan8xahgf931k9h8p6"; depends=[survival]; };
   partialAR = derive2 { name="partialAR"; version="1.0.11"; sha256="1x7vsrjn91nr4bbkzz9mp8h93j9yhwwaqw1abh5n3bsrkq3xmgqj"; depends=[data_table ggplot2 KFAS MASS plot3D Rcpp tseries urca zoo]; };
-  partialCI = derive2 { name="partialCI"; version="1.1.1"; sha256="07c3484v8axqxss877dvb6d5gh4vrr8dbvcqgq2xgwb6wcs59nyy"; depends=[data_table ggplot2 glmnet KFAS MASS partialAR Rcpp TTR zoo]; };
+  partialCI = derive2 { name="partialCI"; version="1.2.0"; sha256="0hi936yg4g5bg61ix2i68f8q4c5nvvshl2728ynz1rl970qfcrp7"; depends=[data_table ggplot2 glmnet KFAS MASS partialAR Rcpp TTR zoo]; };
   partialOR = derive2 { name="partialOR"; version="0.9"; sha256="02vbvln8lswysaafpxq5rxb6crp7yhlc13i42kybv8fr10jaagjj"; depends=[nnet]; };
   particles = derive2 { name="particles"; version="0.2.1"; sha256="0rhxn3c62x3xc9lcy7xbg6r7pgfylan7cz24v8i9icjhl7xfswmv"; depends=[digest dplyr igraph magrittr mgcv Rcpp rlang tidygraph]; };
-  partitionComparison = derive2 { name="partitionComparison"; version="0.2.3"; sha256="1p0f08za30kpmj9ky4jw6i3nl38i7xrslwsj60ih7gvph2jd39ix"; depends=[lpSolve Rdpack]; };
+  partitionComparison = derive2 { name="partitionComparison"; version="0.2.4"; sha256="07w1r4mdi8gv5bjj8shjdjbkply85pp7x5gnwxq96f9g1p4s24pz"; depends=[lpSolve Rdpack]; };
   partitionMap = derive2 { name="partitionMap"; version="0.5"; sha256="0pi066xaaq0iqr0d7cncdzjd7bacmgrivc4qvhqx0y7q1vifrdjm"; depends=[randomForest]; };
   partitionMetric = derive2 { name="partitionMetric"; version="1.1"; sha256="1wry9d3s814yp79ayab7rzf8z5l2mwpgnrc5j7d2sac24vp4pd48"; depends=[]; };
   partitions = derive2 { name="partitions"; version="1.9-19"; sha256="1pklfnjdc094c8nzkqcdvqzdh8v3p5n8jbg4pf9678iw648saiyx"; depends=[gmp polynom]; };
   partools = derive2 { name="partools"; version="1.1.6"; sha256="0w7p88y4ab4v14k16k95cyb5f3yl2g6ban11775rmi2h9xqkfxk8"; depends=[data_table pdist regtools]; };
   partsm = derive2 { name="partsm"; version="1.1-2"; sha256="0cv3lgkdkn97bc85iwlv9w5pmqwwwsgb717zxnbgb5mzf4xn3f3g"; depends=[]; };
-  party = derive2 { name="party"; version="1.3-0"; sha256="1ih3c85s40raq8a0cy952a3g31gf2iwnafy8ij1svzc4hgfzaw2m"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; };
+  party = derive2 { name="party"; version="1.3-1"; sha256="13h8k2m933g9l4df1jjihn9i7ad0jrjyzga6chy0hb54xxi2asni"; depends=[coin modeltools mvtnorm sandwich strucchange survival zoo]; };
   partykit = derive2 { name="partykit"; version="1.2-2"; sha256="118zrf9015kh0gicma98ddm80qhicdlhri2h1nwz0wlng9hkyxbg"; depends=[Formula inum libcoin mvtnorm rpart survival]; };
   parviol = derive2 { name="parviol"; version="1.1"; sha256="1sfgic86ssd5wjf9ydss9kjd3m4jmm2d1v896sjsv8bydwymbpx3"; depends=[vioplot]; };
   passport = derive2 { name="passport"; version="0.2.0"; sha256="1jiwivrz7781zmwxmw13rxl80cr9r5pinnk5bvqz8nhfmlx0zmgd"; depends=[]; };
@@ -9460,15 +9865,16 @@ in with self; {
   patentsview = derive2 { name="patentsview"; version="0.2.1"; sha256="104qq6cqvfk5m2yynpg5iwlp89y5qx18m20qp343mknxjbvqpjdg"; depends=[httr jsonlite]; };
   pathClass = derive2 { name="pathClass"; version="0.9.4"; sha256="1vzmz3bml37wfxsjhkw9fip90sr1iv521ccr7nlf6xd30wavqywk"; depends=[affy Biobase igraph kernlab lpSolve ROCR svmpath]; };
   pathdiagram = derive2 { name="pathdiagram"; version="0.1.9"; sha256="1j2h9mmwfi95nwhk9214kcfpb1qrmw249mjaza7i9gijmlicraxz"; depends=[shape]; };
-  pathfindR = derive2 { name="pathfindR"; version="1.2.0"; sha256="1wf6wv9mdiagv3r4d5nviw8c2zxw7hlxa0mm9kk624g1qfhknnz2"; depends=[AnnotationDbi DBI doParallel foreach fpc ggplot2 knitr org_Hs_eg_db pathview rmarkdown shiny]; };
+  pathfindR = derive2 { name="pathfindR"; version="1.2.3"; sha256="13n8jjzffhr0w7m0h23c16ayd8069ficsx6z98z459805ikzwv9y"; depends=[AnnotationDbi DBI doParallel foreach fpc ggplot2 knitr org_Hs_eg_db pathview rmarkdown shiny]; };
   pathmapping = derive2 { name="pathmapping"; version="1.0.2"; sha256="0kx4wxf6lhi58sif8fzr5w4wa0i5253fq4v0ynp721fv1hkvmhvz"; depends=[]; };
   pathmox = derive2 { name="pathmox"; version="0.2.0"; sha256="0hcllnpjjays35yngz309f1gcx9qg5z9h302kg9mhxs90470x4w0"; depends=[plspm tester]; };
   pathological = derive2 { name="pathological"; version="0.1-2"; sha256="07g7ps6zfxi98y98kwas95rr5ybfd4bpih5mhkjafc7bn99254n2"; depends=[assertive_base assertive_files assertive_numbers assertive_properties assertive_reflection assertive_strings assertive_types magrittr plyr stringi]; };
+  patrick = derive2 { name="patrick"; version="0.0.1"; sha256="16r0q3d9bq06393v46gabn9y9w2w7nqjcl65b7y2ryp35nv0aqsi"; depends=[dplyr purrr rlang testthat tibble]; };
   patternator = derive2 { name="patternator"; version="0.1.0"; sha256="0s4vrhdfblllnhpz2awhhrkwm8d4170xg7fpsp7kvvqy8z8biwvi"; depends=[data_table]; };
   patternize = derive2 { name="patternize"; version="0.0.1"; sha256="0xmz7ca555275a4x89vdmyk9x3m3sk964iwspv0dnxsmx5s1xmz7"; depends=[abind Morpho raster rgdal RNiftyReg sp]; };
   patternplot = derive2 { name="patternplot"; version="0.2.1"; sha256="0ixb9x32fciwxwxnna47z9jb6s1zf3d9jqfiwvv4slaygi2cgydr"; depends=[dplyr ggplot2 gtable jpeg png R6 Rcpp RcppParallel]; };
   pauwels2014 = derive2 { name="pauwels2014"; version="1.0"; sha256="1b7whn13lgydc69kg1fhnwkxirw0nqq75cfvii0yg0j4p8r1lw42"; depends=[deSolve ggplot2]; };
-  pavo = derive2 { name="pavo"; version="1.3.1"; sha256="1vr3crp71dibm3jn88wh4gdia2l3z4aqmfns7v5pllqadk9s1064"; depends=[geometry mapproj pbmcapply rcdd]; };
+  pavo = derive2 { name="pavo"; version="2.0.0"; sha256="1mcrx26lbhldmf1wlkpbpa4ld85wjbvr2kjidzb1hb78lqbv05ad"; depends=[geometry imager mapproj pbmcapply plot3D rcdd sp]; };
   pawacc = derive2 { name="pawacc"; version="1.2.2"; sha256="0d5k0bq8zmb7sjvba3ljp97mba2iycnw44rnsnn2aajs02l1c2xg"; depends=[SparseM]; };
   pawls = derive2 { name="pawls"; version="1.0.0"; sha256="01sf1cmd216ca5iwmw4hfnxi9lvh16r441cfcaa3n77zhq0i4w7n"; depends=[]; };
   pbapply = derive2 { name="pbapply"; version="1.3-4"; sha256="0lk5kxac09xzdv6vf7ix6r5bfrm7cnpyr2l5mkd4igpciadszzfd"; depends=[]; };
@@ -9476,7 +9882,7 @@ in with self; {
   pbdBASE = derive2 { name="pbdBASE"; version="0.4-5.1"; sha256="0ghdq8ry6fiq8qj3plq2n8isjx6iacnhqd1z73bjckmvp99g221n"; depends=[pbdMPI pbdSLAP]; };
   pbdDEMO = derive2 { name="pbdDEMO"; version="0.3-1"; sha256="0vr3dvvhr8j6xvdf308nn37y0lkl2ysm93yf0h7rclvqvsk1pf66"; depends=[pbdBASE pbdDMAT pbdMPI]; };
   pbdDMAT = derive2 { name="pbdDMAT"; version="0.4-2"; sha256="1xiwfpi8r0l8jlfrc35aknm09y4qbn0hvvkscdpcxv9q7zifvl3v"; depends=[pbdBASE pbdMPI]; };
-  pbdMPI = derive2 { name="pbdMPI"; version="0.3-6"; sha256="105nny9d4vm61iarckwf0x6lngkmg3jxys7nigshywhp91073ygk"; depends=[rlecuyer]; };
+  pbdMPI = derive2 { name="pbdMPI"; version="0.3-8"; sha256="0yxzldgvjzzw4adsdv6sh3m3n6xlwfh2rmzn6pgppk8s1brbbjli"; depends=[rlecuyer]; };
   pbdNCDF4 = derive2 { name="pbdNCDF4"; version="0.1-4"; sha256="0fd29mnbns30ck09kkh53dgj24ddrqzks4xrrk2hh1wiy7ap1h95"; depends=[]; };
   pbdPROF = derive2 { name="pbdPROF"; version="0.3-1"; sha256="0a7c31605si062vbwcwngv770axlwyhh00cvdfqw3hv421p61sj8"; depends=[]; };
   pbdRPC = derive2 { name="pbdRPC"; version="0.2-1"; sha256="1pz71zfs9qw96dj3h5mrm734vbbi4drlv9hrw91dbzm3a7jsxg4q"; depends=[]; };
@@ -9501,47 +9907,49 @@ in with self; {
   pcensmix = derive2 { name="pcensmix"; version="1.2-1"; sha256="1yrz4hdj52in8z65qyl18kh7frv75rb8ss5ljv3vbm6yhxi32jnd"; depends=[]; };
   pcev = derive2 { name="pcev"; version="2.2.2"; sha256="1l0afcdzkxzkhkc8ln2fzi50hc7nfq46lg6hhx6rrzkb41w82iqw"; depends=[corpcor RMTstat]; };
   pcg = derive2 { name="pcg"; version="1.1"; sha256="194j72hcp7ywq1q3dd493pwkn1fmdg647gmhxcd1jm6xgijhvv87"; depends=[]; };
+  pcgen = derive2 { name="pcgen"; version="0.1.0.0"; sha256="151dhk1wnc5byrbvx2322bwy047ing3a9zw1q977w347r90h7arr"; depends=[ggm graph Hmisc lme4 MASS Matrix pcalg sommer]; };
   pch = derive2 { name="pch"; version="1.3"; sha256="13pfrvp539fz4hxp08yil93caw3cjdna7xnky5fqd0lhc84fwq76"; depends=[survival]; };
   pcnetmeta = derive2 { name="pcnetmeta"; version="2.6"; sha256="0rpd1bgg932xhj03fnskhbg7ni9nfd8qrvxvix8qmbgw8bwdsbgd"; depends=[coda rjags]; };
   pco = derive2 { name="pco"; version="1.0.1"; sha256="0k1m450wfmlym976g7p9g8arqrvnsxgdpcazk5kh3m3jsrvrcchf"; depends=[]; };
-  pcr = derive2 { name="pcr"; version="1.1.1"; sha256="1bm8c8ajb0imvnp8nwhskjkqdi4v9f11bsz2qdk45i5l2mq16kjc"; depends=[broom devtools dplyr ggplot2 magrittr purrr readr tidyr]; };
+  pcr = derive2 { name="pcr"; version="1.1.2"; sha256="0sms024irkhqyb001lcicrm3dwnnyr2kw9kx10q3v9j6p7rxzhz2"; depends=[devtools dplyr ggplot2 magrittr purrr readr tidyr]; };
   pcrcoal = derive2 { name="pcrcoal"; version="1.2.0"; sha256="0rd610ny8p7by3gi6kk130ii0qcswqsng5mzmxz8hrxqk0cs4c9x"; depends=[ape ggplot2 phylosim]; };
   pcrsim = derive2 { name="pcrsim"; version="1.0.2"; sha256="04177xl513k01prmf93kha91dyxmb9v80d1y4lz73fxsifj6bhar"; depends=[data_table ggplot2 gWidgets mc2d plyr strvalidator]; };
   pcse = derive2 { name="pcse"; version="1.9.1.1"; sha256="1rb9146vjkf36vc5v3frykmsff7kp6qp1hhmj8pak583in4rz8f8"; depends=[]; };
   pdR = derive2 { name="pdR"; version="1.5"; sha256="072ra8czfvgcgkbdfkjhbpk7f23zh717f9sh84vls9j0wyrai6hn"; depends=[boot car coefplot lmtest papeR plm sandwich]; };
-  pdSpecEst = derive2 { name="pdSpecEst"; version="1.2.1"; sha256="0j68jmsm6c9pan195k0l0nm1ldbipl5ywlbwkz61dblspizh04iw"; depends=[ddalpha multitaper Rcpp RcppArmadillo]; };
+  pdSpecEst = derive2 { name="pdSpecEst"; version="1.2.3"; sha256="0kqph8134g1fyzc9b06nighkqsh6jjpckvwxhpslihj5sj3kapdd"; depends=[ddalpha multitaper Rcpp RcppArmadillo Rdpack]; };
   pdc = derive2 { name="pdc"; version="1.0.3"; sha256="0503n7aiy0qrl790yfjvpm7bbyz1i4818rlg96q0fvzb58zqmyvc"; depends=[]; };
   pder = derive2 { name="pder"; version="1.0-0"; sha256="097klk334bjhlss8x73f27l7jcp7d7vh10jr5sazm5kcvi95619i"; depends=[]; };
   pdfCluster = derive2 { name="pdfCluster"; version="1.0-2"; sha256="0kbci54dlzn736835fh18xnf2pmzqrdmwa3jim29xcnwa1r2gklb"; depends=[geometry]; };
   pdfetch = derive2 { name="pdfetch"; version="0.2.3"; sha256="1fcjhq79dcbnghmkfpy1h29gcywr1hq91xij5f21wgp4xx465sha"; depends=[curl httr jsonlite lubridate readr reshape2 XML xml2 xts zoo]; };
-  pdfsearch = derive2 { name="pdfsearch"; version="0.1.1"; sha256="0k62j6ilv8rmmmasqyb3hklhjqg22jiyx0sxd7f8n0xmlfcjgfqi"; depends=[pdftools tibble]; };
+  pdfsearch = derive2 { name="pdfsearch"; version="0.2.3"; sha256="1x6ymj6fk7bf2jx1lqryyzksg049ijdvb9syz244y43i7632ls59"; depends=[pdftools tibble tokenizers]; };
   pdftables = derive2 { name="pdftables"; version="0.1"; sha256="1gnwjijr89cczchc7yi4w5xiw0dalbymvj23rymm8cfra34iwn5p"; depends=[httr]; };
   pdftools = derive2 { name="pdftools"; version="1.8"; sha256="1yyhwr17bln59cr819igd7mxdy5mhqf5fwd68x8w3kgag0v0qyaz"; depends=[Rcpp]; };
   pdist = derive2 { name="pdist"; version="1.2"; sha256="18nd3mgad11f2zmwcp0w3sxlch4a9y6wp8dfdyzvjn7y4b4bq0dd"; depends=[]; };
   pdmod = derive2 { name="pdmod"; version="1.0.1"; sha256="04bk9gjg2c55hk6k1hy0m29927s8a5ig6mr4xb89npam68g0pcms"; depends=[mco]; };
-  pdp = derive2 { name="pdp"; version="0.6.0"; sha256="12x9j3lwnss45wlafd5kc4nw293vhffijmgyafahqwz9if829m10"; depends=[ggplot2 gridExtra lattice magrittr mgcv plyr viridis]; };
+  pdp = derive2 { name="pdp"; version="0.7.0"; sha256="0wcszaq4c14f9a2r1gd32mzhs035jlg2w8mkfklzigcj7fv9xmi8"; depends=[ggplot2 gridExtra lattice magrittr mgcv plyr viridis]; };
   pds3 = derive2 { name="pds3"; version="0.5.0"; sha256="1hipi4ygk30khrrslxq3m9qdichazhrl34k444shs7gi6wjx9ilr"; depends=[rly]; };
   peRiodiCS = derive2 { name="peRiodiCS"; version="0.5.0"; sha256="1366gmn6qfciwcjsfnbl3hfa16ffn11g00fm0kv74ilvm3nnawk3"; depends=[Hmisc rms]; };
   peacots = derive2 { name="peacots"; version="1.3"; sha256="128qpz06b0giz80lp9yq9l6pxcjglfr97yickg7z64vzzl2jilmq"; depends=[]; };
+  peakPantheR = derive2 { name="peakPantheR"; version="1.2.0"; sha256="1g9hj7z99cn0qgyxl4p6fln9mi95q87d25h8n32vlz7n1sv5jhiy"; depends=[doParallel foreach ggplot2 gridExtra minpack_lm MSnbase mzR scales stringr XML]; };
   peakPick = derive2 { name="peakPick"; version="0.11"; sha256="1zf7ff9arm4hkdxrfhb0p8p7npd51icy773g2raaqsfys825xwhm"; depends=[matrixStats]; };
   peakRAM = derive2 { name="peakRAM"; version="1.0.2"; sha256="0mj7f8jqkfky61xag2km0svbgvfmif3c1d8ccav6pv1963cg3cvv"; depends=[]; };
   pear = derive2 { name="pear"; version="1.2"; sha256="1ixmyzm72s18qrfv2m8xzh5503k1q90lhddq4sp46m0q7qyxb192"; depends=[]; };
   pearson7 = derive2 { name="pearson7"; version="1.0-2"; sha256="0x8bnlzgmfah8lzdg8skxs7bm8yq0nkrhqi7q43h902j4jl5b8jy"; depends=[]; };
-  pec = derive2 { name="pec"; version="2018.04.18"; sha256="0a6q37l42zbz566bz0qs5aszd71bb0kd9bz0zmb42q0ak0v4yijd"; depends=[foreach prodlim rms survival timereg]; };
+  pec = derive2 { name="pec"; version="2018.07.26"; sha256="07xr22klvmxpn2k72mjd775fs89f5hppb5xcy4sjy1njalmn3icm"; depends=[foreach prodlim rms survival timereg]; };
   pedantics = derive2 { name="pedantics"; version="1.7"; sha256="14hphziwqrq4fkxlvp94j564q19k9fabvhmdz7zhb6cvak6xv1n6"; depends=[genetics kinship2 MasterBayes MCMCglmm mvtnorm]; };
   pedgene = derive2 { name="pedgene"; version="2.9"; sha256="1200d6blz7n3krnvhw0i9mz6219vwk0vlj17yzr3fqzyn5cyf91z"; depends=[CompQuadForm kinship2 Matrix survey]; };
   pedigree = derive2 { name="pedigree"; version="1.4"; sha256="1dqfvzcl6f15n4d4anjkd0h8vwsbxjg1lmlj33px8rpp3y8xzdgw"; depends=[HaploSim Matrix reshape]; };
   pedigreemm = derive2 { name="pedigreemm"; version="0.3-3"; sha256="1bpkba9nxbaxnivrjarf1p2p9dcz6smf9k2djawis1wq9dhylvsb"; depends=[lme4 Matrix]; };
   pedometrics = derive2 { name="pedometrics"; version="0.6-6"; sha256="1w9wa73wva6z0d56g221l8qmc5igfypwsa2xq4sn4r501bdy8qpq"; depends=[lattice latticeExtra Rcpp]; };
-  pegas = derive2 { name="pegas"; version="0.10"; sha256="1qs2wxbgsraa6vqi7fh391hq2i4g1ysb06q4xqk0rkaymy5bp8ga"; depends=[adegenet ape]; };
+  pegas = derive2 { name="pegas"; version="0.11"; sha256="0l21bapzbjcvblbvks3jh9rpy9hng1ccd7f0glhqw695lc737bpx"; depends=[adegenet ape]; };
   pems_utils = derive2 { name="pems.utils"; version="0.2.17.8"; sha256="1qxsjzxb8gdw1hyxgd923s609k98pjdaxs6wm3pg4bl1w8sxqi8d"; depends=[ggplot2 lattice latticeExtra loa plyr RColorBrewer]; };
   penDvine = derive2 { name="penDvine"; version="0.2.4"; sha256="0znpvsr7zy2wgy7znha1qiajcrz1z6mypi3f5hpims33z7npa7dl"; depends=[doParallel fda foreach lattice latticeExtra Matrix quadprog TSP]; };
   penMSM = derive2 { name="penMSM"; version="0.99"; sha256="1xdcxnagvjdpgnfa5914gb41v5y4lsvh63lbz1d2l8bl9mpff3lm"; depends=[Rcpp]; };
-  penalized = derive2 { name="penalized"; version="0.9-50.1"; sha256="0lhibn0bzdrlvdsp4ni0989jniyfbxnixh32g7qm5qwxf5jbky18"; depends=[Rcpp RcppArmadillo survival]; };
+  penalized = derive2 { name="penalized"; version="0.9-51"; sha256="1zcrwa93mc27qj3g4ayc2k895r6g8q0g6qb2azmvj7wqk750va7a"; depends=[Rcpp RcppArmadillo survival]; };
   penalizedLDA = derive2 { name="penalizedLDA"; version="1.1"; sha256="1bw5wiixmmg1vr3v0d59vh67f0gy2rvr30bi58skvrkb25qcjq6l"; depends=[flsa]; };
-  penalizedSVM = derive2 { name="penalizedSVM"; version="1.1"; sha256="0zc36cgcrdy4rwhg4hhhahymqfalvc5v2zmqq56ikz5blln82qvq"; depends=[corpcor e1071 lhs MASS mlegp statmod tgp]; };
-  penaltyLearning = derive2 { name="penaltyLearning"; version="2017.12.08"; sha256="0pkd853dq7frp0f9aii99qpnx9mk4gzb73iykfa5q9bnp45z8qd0"; depends=[data_table geometry ggplot2]; };
-  pencopula = derive2 { name="pencopula"; version="0.3.5"; sha256="1cy36pprbrfabk9n3x4d1xbj1vd2dda7xq3ihj2hzniwn77j63wi"; depends=[fda lattice latticeExtra quadprog]; };
+  penalizedSVM = derive2 { name="penalizedSVM"; version="1.1.2"; sha256="03zw95bc6svbnzak9x72s3b8l9gh581mxn2di1fl89gxlh864amd"; depends=[corpcor e1071 lhs MASS mlegp statmod tgp]; };
+  penaltyLearning = derive2 { name="penaltyLearning"; version="2018.09.04"; sha256="07ddsq6bwbz0c9pixlw8gj1km6zqhqsqn1a19pgmjrr5mq1iix9p"; depends=[data_table geometry ggplot2]; };
+  pencopula = derive2 { name="pencopula"; version="0.3.5.1"; sha256="1ivnqfq70gvnzc19brkvdlq0ks5dd954dj46j3pqpg6crvdrzh9r"; depends=[fda lattice latticeExtra quadprog]; };
   pencopulaCond = derive2 { name="pencopulaCond"; version="0.2"; sha256="18hjjxnd0l2ms20ddqkghfbd4as5kq2rgwqzpz4y38k6nw76x511"; depends=[doParallel fda foreach igraph lattice latticeExtra pacotest quadprog TSP]; };
   pense = derive2 { name="pense"; version="1.2.0"; sha256="0wilfjhkj5hrgm7mak1hvlk07wrr3f774w26vyvbwlm8xsxxsbzz"; depends=[Matrix Rcpp RcppArmadillo robustbase]; };
   pensim = derive2 { name="pensim"; version="1.2.9"; sha256="10nrnxwfs41bhybs7j6xgnx0pq3c802n9k8irngmh8iy4w3wbhrq"; depends=[MASS penalized]; };
@@ -9550,7 +9958,7 @@ in with self; {
   pequod = derive2 { name="pequod"; version="0.0-5"; sha256="0mwrgyrxgiifpnpy15qxpdrdmd7dxqihccrnj5nh8fq9fvwymamg"; depends=[car ggplot2]; };
   perARMA = derive2 { name="perARMA"; version="1.6"; sha256="0k70lcqhiiffrwzvh51asnhx68qxpnjnxadarvgpgbc7kfy7lv9x"; depends=[corpcor gnm matlab Matrix signal]; };
   perccal = derive2 { name="perccal"; version="1.0"; sha256="1akak068d0g70amj5sbvnqbywzy21l4wz11mhp71b7cp4xmr9n12"; depends=[Rcpp RcppArmadillo RcppEigen]; };
-  perccalc = derive2 { name="perccalc"; version="1.0.1"; sha256="0dq5m7d6jdapbnkh65f5cizqiggpl1922nl4gc6damzvyym95qrj"; depends=[broom dplyr magrittr multcomp purrr tibble tidyr]; };
+  perccalc = derive2 { name="perccalc"; version="1.0.3"; sha256="0x895b75fjipzv7ff9mz7qpcabm9zys3bjsalk6h2q2350lwjmq1"; depends=[broom dplyr magrittr multcomp purrr tibble tidyr]; };
   performanceEstimation = derive2 { name="performanceEstimation"; version="1.1.0"; sha256="08jx2zl6xh0rp54xa70gb717wbfdzfrx9b47i3b3ly41qaf85vrc"; depends=[dplyr ggplot2 parallelMap tidyr]; };
   pergola = derive2 { name="pergola"; version="1.0"; sha256="1650ipp2b455xdkznwm7bnxvimad7nbyr9i1lg2vdh64j1qfh7gl"; depends=[seriation]; };
   perm = derive2 { name="perm"; version="1.0-0.0"; sha256="0075awl66ynv10vypg63fcxk33qzvxddrp8mi4w08ysvimcyxijk"; depends=[]; };
@@ -9558,32 +9966,33 @@ in with self; {
   permGPU = derive2 { name="permGPU"; version="0.14.9"; sha256="10r2qxbvzjxv3520lrn6cwi5akhhwgkhz7yaqxi5vh2f5l0s49wy"; depends=[Biobase foreach RUnit survival]; };
   permGS = derive2 { name="permGS"; version="0.2.5"; sha256="0d2kp3c1fmnjjmsvc2qwh6m66yqvy2vrrxgv1fj2i4clsbavfa0y"; depends=[coin survival]; };
   permPATH = derive2 { name="permPATH"; version="1.1"; sha256="06h1lqpmkg4ajjh4r837qp094h105n4mpvafnp2nsbv9yyayd4h8"; depends=[R2HTML xtable]; };
-  permubiome = derive2 { name="permubiome"; version="1.1"; sha256="02fg1g96pg6a87n8mhrls54xp0vnqqsgg39nnjirxr7hd74l71x9"; depends=[ggplot2]; };
+  permubiome = derive2 { name="permubiome"; version="1.2"; sha256="0np10qhj5rl2gjmq5sfnpaqymmr0wag2b8fwyzndjflvypfmcsyp"; depends=[ggplot2]; };
   permuco = derive2 { name="permuco"; version="1.0.1"; sha256="19spn5ra41v7s4ixdg5pbksfi8linhvhvfmllz72iw6wbzsw8m0m"; depends=[MASS Matrix permute]; };
   permutations = derive2 { name="permutations"; version="1.0-2"; sha256="04lak21x0z1cskgm5w4xdyq59kmyrz64bwfpf332vfka54aiv8lk"; depends=[magic numbers partitions]; };
   permute = derive2 { name="permute"; version="0.9-4"; sha256="1w8wzk1fg9q7wvisnfp2js70dg0m9wi12gkdhpyngpbdcgssahd5"; depends=[]; };
   permutes = derive2 { name="permutes"; version="0.1"; sha256="1m5596l80nyyzassiwb6zd2fnp2jglj5vkp9xsbp28swd0q2wd90"; depends=[ggplot2 lmPerm plyr viridis]; };
   perry = derive2 { name="perry"; version="0.2.0"; sha256="1lfmcq2xsxmfs7cxvhgxcsggslgjicbaks4wcjw1yjh67n559j46"; depends=[ggplot2 robustbase]; };
   persiandictionary = derive2 { name="persiandictionary"; version="1.0"; sha256="0rgi36ngpiax3p5zk4cdgf3463vgx7zg5wxscs2j7834yh37jwax"; depends=[]; };
-  personalized = derive2 { name="personalized"; version="0.1.5"; sha256="1id3ml5n7l7lgd029csn23ffrsqhm4g1id20hxqhqz4knknfxkkf"; depends=[foreach gbm ggplot2 glmnet kernlab mgcv plotly survival]; };
+  personalized = derive2 { name="personalized"; version="0.2.1"; sha256="0qdbnra2ghz3i5xl4gw8ivalci1mqw0qblxvw3mfp0sbj4hvsssy"; depends=[foreach gbm ggplot2 glmnet kernlab mgcv plotly survival]; };
   personograph = derive2 { name="personograph"; version="0.1.3"; sha256="07lrlbw4222l1d5rwn0hfqliyk8sqjf6ipz4n2zwcbk113bb8sy7"; depends=[grImport]; };
   perspectev = derive2 { name="perspectev"; version="1.1"; sha256="175s1nq5z4gfs5qb39lq230g6n0v8fxzs5hr9j2rgx0knpbjfq03"; depends=[ape boot doParallel foreach ggplot2 mapproj sp]; };
   perturb = derive2 { name="perturb"; version="2.05"; sha256="18ydmmp8aq4rf9834dmsr4fr9r07zyn97v8a1jqz3g9njza983la"; depends=[]; };
-  perturbR = derive2 { name="perturbR"; version="0.1.1"; sha256="13in5xjv1854ihalyj4427ix4scc17b95iw72rcb4yivha9jgplq"; depends=[dils ggplot2 igraph mcclust]; };
+  perturbR = derive2 { name="perturbR"; version="0.1.2"; sha256="0hb4bbcij5x9nbvmwr0j59x1hsnf9ddyhkixnbwvmbsha0nkcbww"; depends=[ggplot2 igraph]; };
   petitr = derive2 { name="petitr"; version="1.0"; sha256="0i13zhdrdka0ij0khdzj6ylvvcn4wxvplb8a368i1s64cpgak30c"; depends=[]; };
   petrinetR = derive2 { name="petrinetR"; version="0.2.0"; sha256="04alyjjnwgkbd4qigxki57v3hqa02vr1d5g7slp5njds1vk928ci"; depends=[DiagrammeR dplyr purrr visNetwork xml2]; };
-  petro_One = derive2 { name="petro.One"; version="0.1.3"; sha256="13bxd011lprimy5m3z08l4yng2fkp28b1ad1bqs0piffx5bxw13n"; depends=[cluster data_table dplyr ggplot2 graph magrittr RColorBrewer Rgraphviz rvest RWeka tibble tm urltools wordcloud xml2]; };
   pewdata = derive2 { name="pewdata"; version="0.2.0"; sha256="17j8fdn9x6hannr91zyccya523z3zm03gr517xfcyrd0m486xnqb"; depends=[httr magrittr purrr rvest]; };
   pez = derive2 { name="pez"; version="1.1-1"; sha256="14n9s604wwh07kjir5kw6sra6bbmnpg00h3zvli3zqd8lx892hm8"; depends=[ade4 ape apTreeshape caper FD Matrix mvtnorm picante quantreg vegan]; };
   pfa = derive2 { name="pfa"; version="1.1"; sha256="0ikdd7ps8wnjp9nm66w447m06hqxnnk553jglxikl2w5d9vk6b31"; depends=[lars POET quantreg]; };
   pgam = derive2 { name="pgam"; version="0.4.15"; sha256="12llflsb32dfvxl3nbyb9bsl9bmd35g5g163hd3axzmg1bgi21ls"; depends=[]; };
-  pgbart = derive2 { name="pgbart"; version="0.6.11"; sha256="1xfbpbxqynglw7j311pmx3qsi40r0416yflklh0qggr3pq0qf88k"; depends=[BayesTree]; };
+  pgbart = derive2 { name="pgbart"; version="0.6.12"; sha256="0ykxdrjwswh6kwrs5f83ifqyf23hgq6q73aidmsh1p9iwaxg429r"; depends=[BayesTree]; };
+  pgdraw = derive2 { name="pgdraw"; version="1.0"; sha256="1ips7wxksk69rgirgmd7aqqdf34qis6692wvn7npyzq9y24gwkmb"; depends=[Rcpp]; };
   pgee_mixed = derive2 { name="pgee.mixed"; version="0.1.0"; sha256="115vvpv54q80486i3xs2yhmfyx476cf4g1v43q6l7wj3jwzcrvbg"; depends=[copula mvtnorm Rcpp RcppArmadillo]; };
   pgirmess = derive2 { name="pgirmess"; version="1.6.9"; sha256="1i1qn68isaz2lbpqyydjgj9kri09aknza5qjn6m1wa1alyl7f611"; depends=[boot maptools rgdal rgeos sp spdep splancs]; };
   pglm = derive2 { name="pglm"; version="0.2-1"; sha256="14hnlidf62kzcf83jc7k17n4hjjaj82scdwh8a7qxd056vygkqx2"; depends=[maxLik plm statmod]; };
   pgmm = derive2 { name="pgmm"; version="1.2.2"; sha256="1z39148gvs5nndd54x2afpsqdyqd8apjgnxn0ndv2071aa8gyk1j"; depends=[]; };
   pgnorm = derive2 { name="pgnorm"; version="2.0"; sha256="1k9z7pvmranr8m62v7amc0pj6lwzh3wqi79gg3mflifn1mr6c057"; depends=[]; };
   pgraph = derive2 { name="pgraph"; version="0.8"; sha256="1r784snci5m81qljfh1r3w8qzszmy0476zvsd1alh43afzg9zpr5"; depends=[energy glasso glmnet SAM]; };
+  pgsc = derive2 { name="pgsc"; version="1.0.0"; sha256="1y4szqn1jhp3yn8q738dpbhnqcqk45vgbmczamai154w3wb0qai7"; depends=[nloptr Rcpp RcppArmadillo reshape2]; };
   ph2bayes = derive2 { name="ph2bayes"; version="0.0.2"; sha256="1xm7930gycxrz308dnfnp023yidqik52sbrli35f3773mnfcid2g"; depends=[Rcpp]; };
   ph2bye = derive2 { name="ph2bye"; version="0.1.4"; sha256="0h5d8d4bagkp6g0nb67cb225ki5p1amnclnfj6afgdcsli5clr67"; depends=[animation nleqslv Rcpp VGAM]; };
   ph2hetero = derive2 { name="ph2hetero"; version="1.0.2"; sha256="0aphkdb0ka8lk9q3r4ivkv4hrn7xz62rgqdbpkcwh9s455n38nyi"; depends=[clinfun mvtnorm]; };
@@ -9591,8 +10000,8 @@ in with self; {
   phangorn = derive2 { name="phangorn"; version="2.4.0"; sha256="0xc8k552nxczy19jr0xjjagrzc8x6lafasgk2c099ls8bc1yml1i"; depends=[ape fastmatch igraph magrittr Matrix quadprog Rcpp]; };
   phantom = derive2 { name="phantom"; version="0.1.3"; sha256="0kgw65jziw5s03isq5ywmqijhkbik5i84k30hx5gbi0zzgj8y0h1"; depends=[gplots MASS NMF qusage RColorBrewer Rcpp RcppArmadillo]; };
   phase1RMD = derive2 { name="phase1RMD"; version="1.0.8"; sha256="1wvlajsqb8y8f30asq1lyk87kmakh2risnky98g5gday765y90qa"; depends=[arrayhelpers boot coda ggplot2 mvtnorm rjags]; };
-  phaseR = derive2 { name="phaseR"; version="1.3"; sha256="1hwclb7lys00vc260y3z9428b5dgm7zq474i8yg0w07rxqriaq2h"; depends=[deSolve]; };
-  phateR = derive2 { name="phateR"; version="0.2.8"; sha256="17wlfdcfb14wxv3j45pd5672g5b2w858b65z6x3ck4hi2v8kz19v"; depends=[ggplot2 Matrix reticulate]; };
+  phaseR = derive2 { name="phaseR"; version="2.0"; sha256="14shpsyrcz1j0bl60vh37cpcvmry48s76xlf4f9lmq4l5vynhrcn"; depends=[deSolve]; };
+  phateR = derive2 { name="phateR"; version="0.2.9"; sha256="0zsi047rm0vi5ap4aaiab0ll19xarbg31k4q3fs3dcmsnqg1nrj1"; depends=[ggplot2 Matrix reticulate]; };
   phcfM = derive2 { name="phcfM"; version="1.2"; sha256="0i1vr8rmq5zs34syz2vvy8c9603ifzr9s5v2izh1fh8xhzg7655x"; depends=[coda]; };
   pheatmap = derive2 { name="pheatmap"; version="1.0.10"; sha256="1jzxs5hwbz3r0z2pp09i7fd14sndxnrbm3zibaac3kny4nzydzf7"; depends=[gtable RColorBrewer scales]; };
   phenability = derive2 { name="phenability"; version="2.0"; sha256="0can8qgdpfr4h6jfg23cnwh7hhmwv6538wg2jla9w138la7rhpd1"; depends=[calibrate]; };
@@ -9601,8 +10010,8 @@ in with self; {
   pheno = derive2 { name="pheno"; version="1.6"; sha256="0xdya1g1ap7h12c6zn3apbkxr725rjhcp4gbdchkvcnwz4y9vw8c"; depends=[nlme quantreg SparseM]; };
   pheno2geno = derive2 { name="pheno2geno"; version="1.4.0"; sha256="0fy8z6x1y0sakp07jb6zs0w0f86pbbllicj4qylxzfd5rpn1rqr0"; depends=[mixtools qtl VGAM]; };
   phenoCDM = derive2 { name="phenoCDM"; version="0.1.3"; sha256="1cyqwc36zwa2a4ljy0xnqz0hhw0r98qk2an5y002lrchkqydplwp"; depends=[rjags]; };
-  phenocamr = derive2 { name="phenocamr"; version="1.1.0"; sha256="10k7z82skkf9l15a2b77ygg5lkg0x68z7xbkw4p3mgs68dd9ah63"; depends=[changepoint curl daymetr DT jsonlite leaflet plotly shiny shinydashboard zoo]; };
-  phenology = derive2 { name="phenology"; version="7.0"; sha256="1glbjm7i2kyl04k0sam29zy1lpzfq2mpkgg44jpnby8c9vz8pkmi"; depends=[HelpersMG lmf numDeriv optimx]; };
+  phenocamr = derive2 { name="phenocamr"; version="1.1.1"; sha256="1ic0w9rfh0s50b9kzwmcqam51vibq9ji19vkcscz10grdbwjc502"; depends=[changepoint daymetr httr jsonlite shiny zoo]; };
+  phenology = derive2 { name="phenology"; version="7.2"; sha256="0p39xihqlcapgsb6j90g9hal1jjrd9fra639hxc5gw4kl8nhlndq"; depends=[HelpersMG lmf numDeriv optimx]; };
   phenomap = derive2 { name="phenomap"; version="1.2.1"; sha256="0kpngxqrbahild5nblfvgx2kna43hqqldx5q3b127dnqwzbhfvbb"; depends=[doParallel dplyr phenex plyr raster rgdal stringr]; };
   phenopix = derive2 { name="phenopix"; version="2.3.1"; sha256="1yy163nh2b74m0v7f2gkgxaplvw4whs2h30bkw4chl0zyrcrci86"; depends=[bcp doParallel foreach gtools iterators jpeg plyr raster SDMTools sp stringr strucchange zoo]; };
   phiDelta = derive2 { name="phiDelta"; version="1.0.1"; sha256="0g1g5516p8i1gfpvsy75rdirib8sx1ki2mbf1cvgsnzh70h72gbv"; depends=[]; };
@@ -9611,10 +10020,10 @@ in with self; {
   phonR = derive2 { name="phonR"; version="1.0-7"; sha256="0al2cbynnbvmd90lk1w1g1ppslqq0ng8vbb6bl7m4kqwd2lgv056"; depends=[deldir plotrix splancs]; };
   phonTools = derive2 { name="phonTools"; version="0.2-2.1"; sha256="01i481mhswsys3gpasw9gn6nxkfmi7bz46g5c84m13pg0cv8hxc7"; depends=[]; };
   phonenumber = derive2 { name="phonenumber"; version="0.2.2"; sha256="1m5idp538lvynmfp8m7l89js6hk5lpp26k419bdvj3hd3ap0n9lg"; depends=[]; };
-  phonics = derive2 { name="phonics"; version="1.0.0"; sha256="02bkw589iijlzbw0cbg9qhq99jij2p92cqrxa77chkly4naqkqds"; depends=[BH Rcpp]; };
-  photobiology = derive2 { name="photobiology"; version="0.9.21"; sha256="02516yl2fgfnswyfrhq8s229bniv81ml5vkdq7ap17a2g4v92hvc"; depends=[caTools dplyr lubridate plyr polynom rlang splus2R tibble]; };
+  phonics = derive2 { name="phonics"; version="1.1.0"; sha256="02h26dlhw0hisr2ifa1rkrzw0350pk32mrba7h1rwsh41vxv9sji"; depends=[BH Rcpp]; };
+  photobiology = derive2 { name="photobiology"; version="0.9.24"; sha256="10z9bplknis5zp6m5ayggr7pilv0pkbgyl2hs4qfmddby7cfmbsj"; depends=[dplyr lubridate plyr polynom rlang splus2R tibble zoo]; };
   photobiologyFilters = derive2 { name="photobiologyFilters"; version="0.4.4"; sha256="14aiw5jxd6wnngy1rbbm85l0yx64nxrancal017wvr5n867c32d6"; depends=[photobiology]; };
-  photobiologyInOut = derive2 { name="photobiologyInOut"; version="0.4.14"; sha256="1q0dd3szr06rm6zy2mkb37n4s37554x71jgkhmw88iiy58y2fkv5"; depends=[colorSpec dplyr hyperSpec lazyeval lubridate pavo photobiology readr readxl tibble tidyr]; };
+  photobiologyInOut = derive2 { name="photobiologyInOut"; version="0.4.17-1"; sha256="1m2hjpjciqc1r53qflv7ci2n7jnng11aij8wz91nzi0y0ypics60"; depends=[colorSpec dplyr hyperSpec lazyeval lubridate photobiology readr readxl stringr tibble tidyr]; };
   photobiologyLEDs = derive2 { name="photobiologyLEDs"; version="0.4.3-1"; sha256="0inhl6ba1fzkak4752m60hkm6fzapzyz5kchvz18yv33dmm13v1c"; depends=[photobiology]; };
   photobiologyLamps = derive2 { name="photobiologyLamps"; version="0.4.2"; sha256="0fcin04xc2k39qdipslqd3w3bsd8yl3xlvg7mlgm3aphfwg4hnmj"; depends=[photobiology]; };
   photobiologyPlants = derive2 { name="photobiologyPlants"; version="0.4.1"; sha256="0mpb5sv4wkvqzbhf193zkhap44yzlhxrnjx1p3j9iyjdg4bb1kka"; depends=[photobiology photobiologyWavebands]; };
@@ -9622,10 +10031,10 @@ in with self; {
   photobiologySun = derive2 { name="photobiologySun"; version="0.4.0"; sha256="0aczf1ki623pflsnn08z0nrsx7wwn67b8ql08ar08rpk1bj93nfy"; depends=[photobiology]; };
   photobiologyWavebands = derive2 { name="photobiologyWavebands"; version="0.4.2"; sha256="0l1784xi9hzsxmiqipv0zkb4lq1xd9f890rzsgsjb0km6js5x3q7"; depends=[photobiology]; };
   phrasemachine = derive2 { name="phrasemachine"; version="1.1.2"; sha256="1145c8ymarhbza8253rw4ybnq0k5pcckqxpdcr8s2y23pj182r1p"; depends=[NLP openNLP stringr]; };
-  phreeqc = derive2 { name="phreeqc"; version="3.3.10"; sha256="0hcdjj1wgfknqf5yx50b9vz5f72siw4dslyvk2xbrfnwbzzz4qib"; depends=[]; };
+  phreeqc = derive2 { name="phreeqc"; version="3.4.9"; sha256="0g3xlpwzb6vxz129kh7krf2lbhx6bgwmyjxk09mrzxzh3r5lqd9y"; depends=[]; };
   phtt = derive2 { name="phtt"; version="3.1.2"; sha256="1fvvx5jilq5dlgh3qlfsjxr8jizy4k34a1g3lknfkmvn713ycp7v"; depends=[pspline]; };
   phuassess = derive2 { name="phuassess"; version="1.1"; sha256="0jplj9gih32dllx2hw5aqvc9b94sbrbv66s3a5r8mdbpjh93rhng"; depends=[]; };
-  phuse = derive2 { name="phuse"; version="0.1.5"; sha256="0cl36yxxhadg5rwdz3pxzqly52bv5510rr5ijyzb0x24l7zx6pjk"; depends=[git2r RCurl rlist shiny yaml]; };
+  phuse = derive2 { name="phuse"; version="0.1.6"; sha256="1abfpnf5z88gg0cylfh7j4226yniw3sgx08asrr7xxq6ri0yxl4w"; depends=[git2r httr RCurl rlist shiny yaml]; };
   phybreak = derive2 { name="phybreak"; version="0.2.0"; sha256="0vapc0w308wv1cd72p2xbj3q7jfnxwp08g5g8855a38pcn3njbfg"; depends=[ape phangorn Rcpp stringr]; };
   phyclust = derive2 { name="phyclust"; version="0.1-22"; sha256="0c3w1vafhcshnh5lkb6bykk6w7w91qigz3sf215zqmrra1acri0d"; depends=[ape]; };
   phyext2 = derive2 { name="phyext2"; version="0.0.4"; sha256="0j871kgqm9fll0vdgh071z77ib51y8pxxm0ssjszljvvpx1mb8rb"; depends=[ape phylobase]; };
@@ -9639,31 +10048,34 @@ in with self; {
   phyloland = derive2 { name="phyloland"; version="1.3"; sha256="10g40m6n2s4qvnzlqcwpy3k0j7bxdp79f586jj910b8p00ymrksp"; depends=[ape]; };
   phylolm = derive2 { name="phylolm"; version="2.6"; sha256="0vah8ibicldi57wab4sk1kx7gdq6h34bm6swmxzhq7kikxfwmmyj"; depends=[ape future_apply]; };
   phylometrics = derive2 { name="phylometrics"; version="0.0.1"; sha256="1pmr6l3wmaf91wdlsc5m63l07fibngnly2qzkma0rdi463ii03il"; depends=[mvtnorm]; };
-  phylopath = derive2 { name="phylopath"; version="1.0.0"; sha256="1n6f7piygps3pwqapsvqpz764995kxhdqz1hc5n6znvl01ykdqx5"; depends=[ape dplyr ggm ggplot2 ggraph igraph MuMIn pbapply phylolm purrr tibble tidyr]; };
+  phylopath = derive2 { name="phylopath"; version="1.0.1"; sha256="135b0zhspjns8jdb2y5ajhziyglkr9f5x1618i71dr5848mfkpha"; depends=[ape dplyr ggm ggplot2 ggraph igraph MuMIn pbapply phylolm purrr tibble tidyr]; };
   phyloseqGraphTest = derive2 { name="phyloseqGraphTest"; version="0.0.2"; sha256="1xgv2kf7j3ia5vk10r7w9588rfv7asdaf8f3yxwp5q7aqn3krm6q"; depends=[ggnetwork ggplot2 igraph intergraph phyloseq]; };
   phylosignal = derive2 { name="phylosignal"; version="1.2"; sha256="0apsg4v1n58wn8y8wnl6x1ahl903i29hh8bs2dw6ky2jafkjj4jb"; depends=[adephylo ape boot DBI igraph phylobase Rcpp RcppArmadillo]; };
   phylosim = derive2 { name="phylosim"; version="3.0.2"; sha256="148zm43cgdhr264ffcabjx4abykks07jix6lypqysqy25fbmdngk"; depends=[ape compoisson ggplot2 R_methodsS3 R_oo]; };
+  phylotaR = derive2 { name="phylotaR"; version="1.0.0"; sha256="0plxc3l9fxxj9mfnhnpp5wrxyvxm292fxrwx2g8xysasmjb301v9"; depends=[ggplot2 igraph R_utils rentrez sys treeman treemapify XML]; };
   phylotate = derive2 { name="phylotate"; version="1.2"; sha256="19nssrdax5w5a50159j39jgs7305s48k3h56ivyzs5di6l7x1yxj"; depends=[]; };
   phylotools = derive2 { name="phylotools"; version="0.2.2"; sha256="1dhk1ncp5zi4zl1xfnjz64v983dm7bq7iimfjin80j0bdcpps44w"; depends=[ape]; };
-  phyndr = derive2 { name="phyndr"; version="0.1.0"; sha256="03y3j4ik6flrksqm2dwh2cihn12hzfdik0fsak4zbxjdzaqn5gim"; depends=[ape]; };
   phyreg = derive2 { name="phyreg"; version="1.0.2"; sha256="0m1psq79zl7h8791pl8g6i0ybda7vgddza8r9mwqhg4sw1q4bzcp"; depends=[]; };
-  physiology = derive2 { name="physiology"; version="0.2.2"; sha256="0z394smbnmlrnp9ms5vjczc3avrcn5nxm8np5y58k86x470w6npz"; depends=[]; };
-  phytools = derive2 { name="phytools"; version="0.6-44"; sha256="1y815pv1cksj244vcb7q4qr45gzr4cb1qwi166h65ryggywcj48w"; depends=[animation ape clusterGeneration coda combinat maps MASS mnormt msm nlme numDeriv phangorn plotrix scatterplot3d]; };
+  physiology = derive2 { name="physiology"; version="1.0.1"; sha256="01vza10gfcab8xxq5xszg7yxnsg3cg1x9yhz05jdy34xir7p1jvf"; depends=[Rcpp]; };
+  phytools = derive2 { name="phytools"; version="0.6-60"; sha256="0xxk2r2x81nxsvyggk44fpw3ppfsmmna8lrsy2xpw90da5cxgjjm"; depends=[animation ape clusterGeneration coda combinat expm maps MASS mnormt nlme numDeriv phangorn plotrix scatterplot3d]; };
   phytotools = derive2 { name="phytotools"; version="1.0"; sha256="049znviv2vvzv23biy1l28axm7bc7biwmq4bnn0cnjqgkk48ysz3"; depends=[FME insol]; };
   picante = derive2 { name="picante"; version="1.7"; sha256="0qhaxxmab3c3qw06kx4swfyiqiiqail5h79aarvffryvh0qdgr3m"; depends=[ape nlme vegan]; };
-  picasso = derive2 { name="picasso"; version="1.2.0"; sha256="1bclrv0g2frdw6bfqacjbbzn9vg3354i2bh5zn6hkix7r8rqymzg"; depends=[MASS Matrix]; };
+  picasso = derive2 { name="picasso"; version="1.3.0"; sha256="1s8whczkrxayw6syb4ffgfrxmcflxn31d53bdy9gxzndjd9rpd50"; depends=[MASS Matrix]; };
   pid = derive2 { name="pid"; version="0.36"; sha256="1w6h09ddq8rv7k5xl4v6nhlkm0vnmim57mg0dzk2dv9dc4v8i141"; depends=[DoE_base FrF2 ggplot2 png]; };
-  piecewiseSEM = derive2 { name="piecewiseSEM"; version="2.0.1"; sha256="1pi0jii0yhmvy0rqlchlijrhvdqa07i4wzj4cdd25bbjnfy97ayc"; depends=[car lme4 MASS nlme pbkrtest]; };
+  piecewiseSEM = derive2 { name="piecewiseSEM"; version="2.0.2"; sha256="07vz90cghkbmcar9ps94wydvg4r7mj32pa7vjdmgm5j8dhxq8max"; depends=[car lme4 MASS nlme pbkrtest]; };
   pifpaf = derive2 { name="pifpaf"; version="1.0.1"; sha256="0wj1fbhd871fnw7fjlbh0gdjz848mbwl1bzjp3cgmh9s7jnd2kci"; depends=[ggplot2 gridExtra MASS matrixcalc numDeriv sfsmisc]; };
-  pillar = derive2 { name="pillar"; version="1.2.3"; sha256="1rzhssprqgam1nq3s0f5rzxhxsq02azcghvxf6k8kmsmddf1n7f8"; depends=[cli crayon rlang utf8]; };
+  piggyback = derive2 { name="piggyback"; version="0.0.8"; sha256="1c17yjqpaj6r6spbhm901dilqpsa2s9jc029vdfmrxdk18fzaf1f"; depends=[clisymbols crayon fs gh git2r httr jsonlite lubridate magrittr memoise usethis]; };
+  pillar = derive2 { name="pillar"; version="1.3.0"; sha256="1q6arybmfqxhp5zqj1fri5pb8v7ywcv7bmgf81rrmgl892p4bn5f"; depends=[cli crayon fansi rlang utf8]; };
   pim = derive2 { name="pim"; version="2.0.1"; sha256="1m804clxc8m4nyzi4hhfy118527lgf2sb7589qd61fb83yh6hi8p"; depends=[BB nleqslv]; };
-  pimeta = derive2 { name="pimeta"; version="1.0.1"; sha256="1l50k34xrnhfwwnwa7ym97blhqi84nkgcf9y5yg6hcg75ajgi6zl"; depends=[Rcpp RcppEigen]; };
-  pinbasic = derive2 { name="pinbasic"; version="1.2.0"; sha256="1sn4q9g2pw8z6gyxi302bd7p578ldy1g6419w56z7jgv7m8n7g73"; depends=[fastcluster ggplot2 lubridate Rcpp reshape2 scales]; };
+  pimeta = derive2 { name="pimeta"; version="1.1.1"; sha256="0ylna31x8491q6hppz827ngri0did0bfwy3nlifpagccb2m4psi3"; depends=[Rcpp RcppEigen]; };
+  pinbasic = derive2 { name="pinbasic"; version="1.2.1"; sha256="0ciqqjhbhj1kvf4lkswqi5fc8m32lk2mwhyc96afvjvaig1xv5q8"; depends=[fastcluster ggplot2 lubridate Rcpp reshape2 scales]; };
   pinfsc50 = derive2 { name="pinfsc50"; version="1.1.0"; sha256="1fja8xdqwsm4g223wmb2yg5fqmsg94hchzjd4qrqah1zb8vbdfdn"; depends=[]; };
+  pingers = derive2 { name="pingers"; version="0.1.1"; sha256="09np6aph6rhvdh6mwky8a57i38bi2amwi7x91p9kfb2mzkql8k8w"; depends=[data_table dplyr lubridate plotly reshape2 stringr tibble tictoc tidyselect]; };
   pingr = derive2 { name="pingr"; version="1.1.2"; sha256="17fh2gjlmwy6wy8i24q76fivjig8jm05g9kvfz81q0h6b5zxnpmg"; depends=[]; };
   pinnacle_API = derive2 { name="pinnacle.API"; version="2.3.3"; sha256="1b6adns1xr3cgcj2mdjvl16cm2vjjgsj2l8m2c47plyc5jh05qmb"; depends=[data_table httr jsonlite magrittr openssl purrr rjson uuid]; };
   pinnacle_data = derive2 { name="pinnacle.data"; version="0.1.4"; sha256="1sl36i2857b3xwx7iwgy8mkgjvz7nfa74ch1n8kcxbj59ib7mp8p"; depends=[tibble]; };
-  pinp = derive2 { name="pinp"; version="0.0.5"; sha256="12wypniib0pacgd3lvk64r1xy01yangjk9k2b2pkj8il4ycvijk4"; depends=[knitr rmarkdown]; };
+  pinp = derive2 { name="pinp"; version="0.0.6"; sha256="1424syaxq8p0ldqa0ybn0qyizs4r00xgkf6h5p7frhavy4rf8f2v"; depends=[knitr rmarkdown]; };
+  pinyin = derive2 { name="pinyin"; version="1.1.4"; sha256="0qndd2mc95hbzkb0aqvmyhk2anwk7msd8xqy0rfiyrab94kxmgla"; depends=[data_table splitstackshape]; };
   pipe_design = derive2 { name="pipe.design"; version="0.5.1"; sha256="0r0szkdzifxmnnbr6675w8ij4zwqgxj3gwahc7a74mxr51f7qh8j"; depends=[ggplot2 gtools xtable]; };
   pipeGS = derive2 { name="pipeGS"; version="0.4"; sha256="0ki4i70r5f195b4jfv3hxlxz3zj57mhy2yf4984bwr11impilz5w"; depends=[]; };
   pipeR = derive2 { name="pipeR"; version="0.6.1.3"; sha256="16lj227x24pviqb4dcrj7a55l31p5mm0cbwsb6m3y3n6k5wcd2nh"; depends=[]; };
@@ -9674,18 +10086,20 @@ in with self; {
   piton = derive2 { name="piton"; version="0.1.1"; sha256="1265y4lv2m5nwrh25sahjkxwmivpxgh9shrdidlmaman7zs6cclr"; depends=[Rcpp]; };
   pivot = derive2 { name="pivot"; version="18.4.17"; sha256="0nhf76f2g35cx5f1m00wsy29n6xm2x5wajs5myaasks7hbkk0w3y"; depends=[assertthat colorspace DBI dbplyr dplyr lubridate magrittr purrr rlang tidyr tidyselect]; };
   pivotaltrackR = derive2 { name="pivotaltrackR"; version="0.1.0"; sha256="024srncm288mn3bz6hv7ljzkchmnljk4yc2d4z7i05vsn7dzd2c6"; depends=[curl httr]; };
-  pivottabler = derive2 { name="pivottabler"; version="0.4.0"; sha256="1q7gmfrqx3sn32q9rrr0y3hywq0fvm5gs5d3jj6mqcbs53jqvzqc"; depends=[data_table dplyr htmltools htmlwidgets jsonlite R6]; };
+  pivottabler = derive2 { name="pivottabler"; version="1.0.0"; sha256="106q62bfnkmh328kdzshwz8v01pz2qiyxcgmfbn3rc0cd9ml6wyj"; depends=[data_table dplyr htmltools htmlwidgets jsonlite R6]; };
   pixels = derive2 { name="pixels"; version="0.1.0"; sha256="0lna0z2shs49kh48ipjnyigaa22wb9gm4mq970ldhh9msb7wcv55"; depends=[htmlwidgets miniUI shiny]; };
-  pixiedust = derive2 { name="pixiedust"; version="0.8.4"; sha256="0rq1q30x36p1135kv2s8nfshi8w73167dj14f4c5m3fczhljc7lr"; depends=[broom checkmate dplyr htmltools knitr labelVector magrittr scales tidyr]; };
+  pixiedust = derive2 { name="pixiedust"; version="0.8.5"; sha256="1b3i2l6vzqbpycp9fw439k4jzdy19kvsjj4j6klfvdbkqf911hfw"; depends=[broom checkmate dplyr htmltools knitr labelVector magrittr scales tidyr]; };
   pixmap = derive2 { name="pixmap"; version="0.4-11"; sha256="04klxp6jndw1bp6z40v20fbmdmdpfca2g0czmmmgbkark9s1183g"; depends=[]; };
   pkgKitten = derive2 { name="pkgKitten"; version="0.1.4"; sha256="0c44zrvpyz87s5mjhsqdrkyrvyzhyldnq371bwnn9crbpbac3wnd"; depends=[]; };
-  pkgbuild = derive2 { name="pkgbuild"; version="1.0.0"; sha256="10iz8057mixl9j73pq2cbp4ib6dadfsgi3fcsjjm7l3wwb9issd9"; depends=[callr crayon desc R6 rprojroot withr]; };
-  pkgconfig = derive2 { name="pkgconfig"; version="2.0.1"; sha256="0h2sp93fqqjbfqgq82a3i94ybnndx6ghaal8pbf99firnsjb40mb"; depends=[]; };
+  pkgbuild = derive2 { name="pkgbuild"; version="1.0.2"; sha256="1i1rrax7x7r2bplig5cfc50lx85jc4n9a3qmvbdviaj22wr2lghs"; depends=[callr cli crayon desc prettyunits R6 rprojroot withr]; };
+  pkgconfig = derive2 { name="pkgconfig"; version="2.0.2"; sha256="1jk9ip549xphb3anfixqv1yx5kidnndqgy9v3qjpmgmds5a7g695"; depends=[]; };
   pkgcopier = derive2 { name="pkgcopier"; version="0.0.1"; sha256="04vpjf8nvqnpry54f1wwrnmipd5m6gqd89c3vkryqx88jk85jd8s"; depends=[httr stringr]; };
   pkgdown = derive2 { name="pkgdown"; version="1.1.0"; sha256="0w1f23d600j9s8sa5xq63j2p6pvch8nndcxc63s14szlfjlvmddd"; depends=[callr cli crayon desc devtools digest evaluate fs highlight httr magrittr MASS memoise purrr R6 rematch rlang rmarkdown roxygen2 rsconnect rstudioapi tibble whisker xml2 yaml]; };
   pkggraph = derive2 { name="pkggraph"; version="0.2.2"; sha256="0pzqlim84b22ahq5yr50ybffqa0f5k5ch372v37nw1ndzci211d8"; depends=[curl data_table dplyr ggnetwork ggplot2 htmltools igraph intergraph Matrix network networkD3 plyr RColorBrewer tibble]; };
+  pkgload = derive2 { name="pkgload"; version="1.0.1"; sha256="0mm0avvan528zbrcrxigl5fkd7za01fb0qhlqrqvm3ar0115cqa8"; depends=[desc pkgbuild rlang rprojroot rstudioapi withr]; };
   pkgmaker = derive2 { name="pkgmaker"; version="0.27"; sha256="0spcamjncj78kzjps2rw4v1a4494yazv6xvhn0vmdflnypc8k8hp"; depends=[bibtex codetools digest magrittr registry stringi stringr withr xtable]; };
   pkgnet = derive2 { name="pkgnet"; version="0.2.0"; sha256="0rbwpmkphsy51zncy2pv2cnf7v2dpk8gf8qwmbz4iyiq94kqri6f"; depends=[assertthat covr data_table DT futile_logger igraph knitr magrittr mvbutils R6 rmarkdown visNetwork]; };
+  pkmon = derive2 { name="pkmon"; version="1.0"; sha256="0j2v4zlf7vgy5gld29xiii15m9i85cpiwc25rmzjm02cz2p32c72"; depends=[]; };
   pkr = derive2 { name="pkr"; version="0.1.2"; sha256="0m045dlcq3rls1w0smy4jvk3c57ckpqdv8xnz261k1gnnyjmz1k2"; depends=[binr foreign forestplot rtf]; };
   pks = derive2 { name="pks"; version="0.4-0"; sha256="0fx7p2d83x0ip65aqp9dga59d9cggam8k79mi0drk5birzchqbcr"; depends=[sets]; };
   plRasch = derive2 { name="plRasch"; version="1.0"; sha256="1rnpvxw6pzl5f6zp4xl2wfndgvqz5l3kiv9sh4cpvhga0gl8zjaw"; depends=[survival]; };
@@ -9694,7 +10108,7 @@ in with self; {
   placement = derive2 { name="placement"; version="0.1.1"; sha256="1narjb90sb5prvzfv2x30bz8y9aq8hqggza91ghwi47m99vm1dg6"; depends=[base64enc digest jsonlite RCurl stringi urltools]; };
   plan = derive2 { name="plan"; version="0.4-3"; sha256="0j3mvcy97r7adcs7q6z0w9ng74jcfwii1xp8kcl2cwbzs2fd425r"; depends=[]; };
   planar = derive2 { name="planar"; version="1.6"; sha256="0x5xdb2afpc1w8s217hy765mz938kg5b5j7vzqzhlsh2dzdjccpj"; depends=[cubature dielectric ggplot2 plyr Rcpp RcppArmadillo reshape2 statmod]; };
-  planor = derive2 { name="planor"; version="1.3-9"; sha256="0hivy4iqfw896d2zmcx5c3rmlfj8fkqg1qn2x8mdlial3dzm3mz6"; depends=[bit64 conf_design Rcpp RcppArmadillo]; };
+  planor = derive2 { name="planor"; version="1.4-1"; sha256="1ci4wp18jjc8pjdn89vsz0nfdjif7fz6l5f6x6blqh9cz4hkkrlf"; depends=[bit64 conf_design Rcpp RcppArmadillo]; };
   plantecophys = derive2 { name="plantecophys"; version="1.3-2"; sha256="1jj9rkhdmcnmp6fzbxmkfwmsdx2w7v923rv0xn5c5iv7wys7vwfm"; depends=[]; };
   plaqr = derive2 { name="plaqr"; version="2.0"; sha256="15pdb57123m3cahvcsyrrvxjwxvs2f389yxip91gjxn68jf6cx1l"; depends=[quantreg]; };
   plater = derive2 { name="plater"; version="1.0.1"; sha256="0v5b9r6iha18qvrjpbr1p8fy06nf31x63ch5cnb4axyqa0x5skpp"; depends=[dplyr]; };
@@ -9704,7 +10118,7 @@ in with self; {
   pleiades = derive2 { name="pleiades"; version="0.2.0"; sha256="1h3q4yf0w0al7n8l7ca4vgx2bhrrz8clli15svlds7n402s8rzp5"; depends=[crul DBI dbplyr dplyr gistr jsonlite rappdirs RSQLite]; };
   pleio = derive2 { name="pleio"; version="1.5"; sha256="1y9nkv5bzfkzbl373405v3xq54nz37wjz9zkxfzl8ggr5i9lcbqy"; depends=[Matrix rms]; };
   plfMA = derive2 { name="plfMA"; version="1.0.4"; sha256="0q6wiiknmgw812kcf9qq309zlizyry7ldn6m08lkw6xq6i4f4s85"; depends=[cairoDevice gWidgets gWidgetsRGtk2 limma RGtk2]; };
-  plfm = derive2 { name="plfm"; version="2.2.1"; sha256="00x6yyr32rhh6696z5aazj98nyd01i26ij9hs2sxf6j677fmppdr"; depends=[abind sfsmisc]; };
+  plfm = derive2 { name="plfm"; version="2.2.2"; sha256="1jgf3jrkdpsf77i4lf68s6sxax95c9is4nryhnzanq9i5f23j24v"; depends=[abind sfsmisc]; };
   plgp = derive2 { name="plgp"; version="1.1-7"; sha256="02g6saabrsd8pra0szbwcbilf6w5ywg2gxqb5zdvbxds2vw36hn0"; depends=[mvtnorm tgp]; };
   plink = derive2 { name="plink"; version="1.5-1"; sha256="0rn2i9i8af9aq0xgxhpcdchs2952lq2d2sg8x3js0zi3vcml76k0"; depends=[lattice MASS statmod]; };
   plm = derive2 { name="plm"; version="1.6-6"; sha256="1a14a8zbqzm2a6z44haa0c23ax9j1jk72dhrkca8q0abbd5lkx85"; depends=[bdsmatrix Formula lattice lmtest MASS maxLik nlme sandwich zoo]; };
@@ -9721,22 +10135,23 @@ in with self; {
   plotSEMM = derive2 { name="plotSEMM"; version="2.4"; sha256="0fircrayhz92zvkigkyb1zpn07bvssqs1ip15p926zj3rl77fqgy"; depends=[MplusAutomation plotrix plyr Rcpp shiny]; };
   plotfunctions = derive2 { name="plotfunctions"; version="1.3"; sha256="0cnmwkfjg45187j490sf01gxijhajrpi6j13hfckli2ysn6xrgz3"; depends=[]; };
   plotluck = derive2 { name="plotluck"; version="1.1.0"; sha256="0arbvldg50lyn98vkrys1yjkkraz8jracwal4r2mlw991pnaikpp"; depends=[ggplot2 hexbin Hmisc plyr quantreg RColorBrewer scales]; };
-  plotly = derive2 { name="plotly"; version="4.7.1"; sha256="0wj9lw7w28z8w9ip9vadv6sydjhqyg65kfiai9m3bndzz50b1m3w"; depends=[base64enc crosstalk data_table digest dplyr ggplot2 hexbin htmltools htmlwidgets httr jsonlite lazyeval magrittr purrr RColorBrewer scales tibble tidyr viridisLite]; };
+  plotly = derive2 { name="plotly"; version="4.8.0"; sha256="19p8pa03q9mw5vaan7r56xgd13d90ssiz0flbrkvpfrir2105ybq"; depends=[base64enc crosstalk data_table digest dplyr ggplot2 hexbin htmltools htmlwidgets httr jsonlite lazyeval magrittr promises purrr RColorBrewer rlang scales tibble tidyr viridisLite]; };
   plotlyGeoAssets = derive2 { name="plotlyGeoAssets"; version="0.0.1"; sha256="0if4cahihxm0b2k3r0w6qj91mwwsjy5zm289zk6myg65i7ijqly4"; depends=[]; };
-  plotmo = derive2 { name="plotmo"; version="3.4.2"; sha256="19g3b0pjxzv1nd65q0aimgw16xyq451l8bgyfhvwxm30c4qyafd5"; depends=[plotrix TeachingDemos]; };
+  plotmo = derive2 { name="plotmo"; version="3.5.0"; sha256="14v703ky45sw34iwbqna7f8hylzbnlqm2gnml7avdp2i8ycli8wb"; depends=[plotrix TeachingDemos]; };
   plotpc = derive2 { name="plotpc"; version="1.0.4"; sha256="1sf7n7mfyaijldm24bc8r8pfm8pp9cyaja7am14z2wpj2j9f9vyq"; depends=[]; };
   plotprotein = derive2 { name="plotprotein"; version="1.0"; sha256="14kfb4xxpfp8klz31kb7cpc39636ax2cx2483vqqkciccb28f0ks"; depends=[ade4 plotrix plyr seqinr XML]; };
-  plotrix = derive2 { name="plotrix"; version="3.7-2"; sha256="0hx3xv94gzlyy7ny5k4mzs7w1798h1zka175m5bkzc524493cm88"; depends=[]; };
+  plotrix = derive2 { name="plotrix"; version="3.7-4"; sha256="1hs0zwaqs34559girinvysjfbvznyn8znp9cwvkqx6k2cqvcjinj"; depends=[]; };
   plotrr = derive2 { name="plotrr"; version="1.0.0"; sha256="07ilqpa3ypqb2gpnq23r9v4kkfxz06mcak9si9adr9sf6c7gqwxz"; depends=[dplyr ggplot2]; };
+  plotscale = derive2 { name="plotscale"; version="0.1.6"; sha256="0h2g0rv1lh70nqmqydgg5swwnwmy08wbjajxyb1c2a716rad765j"; depends=[]; };
   plotwidgets = derive2 { name="plotwidgets"; version="0.4"; sha256="1w7c9grw4pyyra230196yq32snr4wdg6xi8vh4dx5df2v500wz22"; depends=[]; };
-  pls = derive2 { name="pls"; version="2.6-0"; sha256="15j59p5x0rkdrk7iqzkipsy50rsyjl31w8zxc4w3v1j5gzxhi1rx"; depends=[]; };
-  plsRbeta = derive2 { name="plsRbeta"; version="0.2.2"; sha256="1ia3hngpzaav3gfcxajb1fxa2ljgbwd5xkrahc2bxi7wfdidngs5"; depends=[betareg boot Formula MASS mvtnorm plsdof plsRglm]; };
-  plsRcox = derive2 { name="plsRcox"; version="1.7.3"; sha256="17x79ihl9xpahva9ibbipyp1z9crvwm3y5g7ynxfjq7rjxwvw13y"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; };
+  pls = derive2 { name="pls"; version="2.7-0"; sha256="0xaqqgmdvfh7g7v1m4bcwjqzph68b9cq3bn4kjisfsadl54i5p2x"; depends=[]; };
+  plsRbeta = derive2 { name="plsRbeta"; version="0.2.3"; sha256="0yk2pirgszpdf33zk9ijh776aw4f238sjmga3w06xbvwf8q2vw8j"; depends=[betareg boot Formula MASS mvtnorm plsdof plsRglm]; };
+  plsRcox = derive2 { name="plsRcox"; version="1.7.3.1"; sha256="1ni1hx54qxk48nnypqd9j189vi4vph3lqg06r39mv7xa4ap8ypmv"; depends=[kernlab lars mixOmics pls plsRglm risksetROC rms survAUC survcomp survival]; };
   plsRglm = derive2 { name="plsRglm"; version="1.2.3"; sha256="0qf3nh3nw6psqr12zw9r5vagrlpwav3xiv3rh7xra13zx821kr4g"; depends=[bipartite boot car mvtnorm]; };
   plsVarSel = derive2 { name="plsVarSel"; version="0.9.4"; sha256="19xz7ds4jx5ql999mwn9zs983rlshf14y4nlah8cfy9gpi0vl1g1"; depends=[bdsmatrix genalg MASS mvtnorm pls progress]; };
   plsdepot = derive2 { name="plsdepot"; version="0.1.17"; sha256="1i00wxr451xpfy6dnvcm11aqf9106jsh5hj7gpds22ysgm4iq5w4"; depends=[]; };
-  plsdof = derive2 { name="plsdof"; version="0.2-7"; sha256="1z8z9m0nsnyy1fipzvm1srpxn3q6wjrlivmmki1f8plwkixkyc5y"; depends=[MASS]; };
-  plsgenomics = derive2 { name="plsgenomics"; version="1.5-1"; sha256="0d2k3h2cwwhcv7mbxqypd7g6yp1l6j32n3wslm348zmcx50j9pn4"; depends=[boot fields MASS plyr reshape2 RhpcBLASctl]; };
+  plsdof = derive2 { name="plsdof"; version="0.2-8"; sha256="00phvvb17s0y2f0xqwak7lp7bdx9lws3m5n5mbd9l8514pfdxcxc"; depends=[MASS]; };
+  plsgenomics = derive2 { name="plsgenomics"; version="1.5-2"; sha256="1pvb50nv6jc99bm2hsxpzazg26y49yi24wwwim5xcjj6j1szbip4"; depends=[boot fields MASS plyr reshape2 RhpcBLASctl]; };
   plspm = derive2 { name="plspm"; version="0.4.9"; sha256="03aj1ffq11hh931dbkxy9ba74xyvzmr1ylrj4fw1rbryrwqg89v6"; depends=[amap diagram shape tester turner]; };
   plspm_formula = derive2 { name="plspm.formula"; version="1.0.1"; sha256="1i2d1q8pz21js1ci8afnqzcky430hh1iwf5f6jr3j9yr9gs365k5"; depends=[plspm]; };
   plspolychaos = derive2 { name="plspolychaos"; version="1.1-1"; sha256="078arfv8z5nfrmsfi0n7hskmv394ysi6nhlskpy5cg37lqiwh0r1"; depends=[lhs MASS]; };
@@ -9747,13 +10162,14 @@ in with self; {
   plus = derive2 { name="plus"; version="1.0"; sha256="1l7lvnq7vahj8m7knmr4q3wj00ar7iq89j45a2dqn2bh0qyj68ls"; depends=[]; };
   plusser = derive2 { name="plusser"; version="0.4-0"; sha256="1g100dh8cvn9q09j0jbkw4xmwjdp1lm4651369975fm99nrlp1j9"; depends=[lubridate plyr RCurl RJSONIO]; };
   plyr = derive2 { name="plyr"; version="1.8.4"; sha256="1igar5pcjqh0jyxv0z3jah8rz617vfa86vw0r5c7c031b7bj5db0"; depends=[Rcpp]; };
-  pmatch = derive2 { name="pmatch"; version="0.1.3"; sha256="1k83ysgc4dwms0k5knh2rj99l3kfclw9a29h2ksphy0g4r1ig9k3"; depends=[dplyr glue purrr rlang tibble]; };
+  pmatch = derive2 { name="pmatch"; version="0.1.4"; sha256="1d04q3kh46pha4yn5xy6ax7qkw9bwrxfkh5x6y4nwsby5j3xw2c0"; depends=[dplyr foolbox glue magrittr purrr rlang tibble]; };
   pmc = derive2 { name="pmc"; version="1.0.3"; sha256="06bsab09i9ydgsjx5i50kdb22ldp4g1v83a01kz3mswybi4lv9w2"; depends=[dplyr geiger ggplot2 ouch tidyr]; };
   pmcgd = derive2 { name="pmcgd"; version="1.1"; sha256="1pybzvyjmzpcnxrjsas06diy3x83i1r5491s6ccyr63l56hs55d5"; depends=[mixture mnormt]; };
   pmclust = derive2 { name="pmclust"; version="0.2-0"; sha256="1bpfix76ylmn5ds6y0v40mfad7znaa6dj5ngr4mzv96yy6mg13ns"; depends=[MASS pbdBASE pbdDMAT pbdMPI]; };
-  pmhtutorial = derive2 { name="pmhtutorial"; version="1.2"; sha256="1dviqazdk3ggxwwyv20409w3qadka0gbcgviwyywssn2x4cg0vih"; depends=[mvtnorm Quandl]; };
-  pmml = derive2 { name="pmml"; version="1.5.4"; sha256="1acld1x0z5rgyxb5id071s3zvf2vbv4b9nngvxrb63ay3yyy124b"; depends=[stringr XML]; };
-  pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.1"; sha256="1cxmp3fgsf3z71v6qpd9l9ilgda5knan7vqifxpgm8m7a30sp3f3"; depends=[]; };
+  pmhtutorial = derive2 { name="pmhtutorial"; version="1.3"; sha256="1acrqjannyhg608g8ap3hj2r6krl0js44q8gsyk7lw0s0xr1k67v"; depends=[mvtnorm Quandl]; };
+  pmml = derive2 { name="pmml"; version="1.5.6"; sha256="0w12gnjf7l59qws9cn87ay5xglixbpiir53ms6y4r0y3vn7xb8yn"; depends=[stringr XML]; };
+  pmmlTransformations = derive2 { name="pmmlTransformations"; version="1.3.2"; sha256="1s222r0zj630gjsvi28wb5mbz9fky967m9jnpaj8nsqv3k9sgkcc"; depends=[]; };
+  pmpp = derive2 { name="pmpp"; version="0.1.0"; sha256="1vmv7aav0rvp7kd5f16ym422ygw1wpnwrhmmp2w1c2fl8i263zh9"; depends=[data_table dplyr ggplot2 magrittr MASS Matrix minqa moments plm pracma]; };
   pmr = derive2 { name="pmr"; version="1.2.5"; sha256="0dq97dfjmgxlhr3a2n20vyyzfmamcicw878hdxpw31lw02xs6yls"; depends=[]; };
   pmultinom = derive2 { name="pmultinom"; version="1.0.0"; sha256="0p2amb3y4jl24r21fii1qpmdbn5pfgywrx8k7x1jxpg49rk7k0rp"; depends=[fftw]; };
   pmxTools = derive2 { name="pmxTools"; version="0.1.0"; sha256="1a242c85ywk026vb778s8bjc331ww11rb15pai02wbvpw9x4kpa0"; depends=[GGally ggplot2 magrittr MASS PKNCA plyr stringr XML xpose]; };
@@ -9769,40 +10185,45 @@ in with self; {
   pointdensityP = derive2 { name="pointdensityP"; version="0.3.4"; sha256="0vv8j1yz8n2vmmp6bg2i8w3dchdbybsdxn3sk5d1ync2knih8l2s"; depends=[data_table]; };
   poio = derive2 { name="poio"; version="0.0-3"; sha256="1smbnqjlicaqq2hswl910yiirzb9zikbk4pqxm9pwpixywj0nkys"; depends=[assertive_base assertive_files assertive_properties assertive_sets assertive_strings assertive_types devtools digest dplyr magrittr R6 stringi tibble whoami]; };
   poisDoubleSamp = derive2 { name="poisDoubleSamp"; version="1.1"; sha256="13wyj9jf161218y4zjv2haavlmanihp9l59cvh7x8pfr9dh2dwr8"; depends=[Rcpp]; };
+  poisFErobust = derive2 { name="poisFErobust"; version="1.0.1"; sha256="0qgwl5gb2rw043zb0h1rrv038ymsd72r8h9gqdr2xkfbi3mnr24r"; depends=[data_table glmmML]; };
   poisbinom = derive2 { name="poisbinom"; version="1.0.1"; sha256="0mjxg0s3nck7qrmq4bbrhwxfwr6fqml54s9k8q1mkfzlifa7qyf7"; depends=[Rcpp]; };
   poisson = derive2 { name="poisson"; version="1.0"; sha256="1diyf1b84sr6iai3ghd3kcp6fc6w7fan49wzs1lzvxxsmp15ag2d"; depends=[]; };
   poisson_glm_mix = derive2 { name="poisson.glm.mix"; version="1.2"; sha256="0328m279jfa1fasi9ha304k4wcybzr7hldww7wn0cl7anfxykbv8"; depends=[]; };
+  poissonMT = derive2 { name="poissonMT"; version="0.3-5"; sha256="14qkc8qz3423b13gp6gsp8cbb1nv9wwjjfa4i9zc15qy5i99ha26"; depends=[checkmate MASS robcbi robustbase]; };
   poistweedie = derive2 { name="poistweedie"; version="1.0"; sha256="18992fafypds3qsb52c09fasm3hzlyh5zya6cw32wnhipmda643m"; depends=[]; };
   poker = derive2 { name="poker"; version="0.8.8"; sha256="14ik77440z22k4kwq0p1fn7adzi0p8mh8j8hd7ayinvrab4b5r85"; depends=[]; };
   polidata = derive2 { name="polidata"; version="0.1.0"; sha256="07641v0dnn161kyxx7viplkf8c3r51hd4hd5pzmcph4y4387r01i"; depends=[jsonlite RCurl]; };
-  poliscidata = derive2 { name="poliscidata"; version="1.2.0"; sha256="0vn9wdlh3bi24mcq0r4ani2b0hhlg1za1z6fw8ikz7952gpacqk8"; depends=[abind car descr ENmisc gplots Hmisc plotrix plyr survey weights xtable]; };
-  politeness = derive2 { name="politeness"; version="0.2.4"; sha256="0r8wsghznbkdl3nn1rh7wi3l9zggdrvi2yjish7inkd8ygs4p8x1"; depends=[data_table ggplot2 glmnet quanteda spacyr stringr textir tm]; };
-  pollen = derive2 { name="pollen"; version="0.70.0"; sha256="1hk9sjxzwglj98ryic3m80lajzv1klnq9dl6i97c8f0ihbf97zdq"; depends=[dplyr lubridate purrr]; };
+  poliscidata = derive2 { name="poliscidata"; version="2.2.3"; sha256="18mmdzf9hrfz36rh1rg1j5q1m131xadppy272y4f4yay0ljafbm2"; depends=[abind car descr ENmisc gplots Hmisc plotrix plyr survey weights xtable]; };
+  politeness = derive2 { name="politeness"; version="0.2.5"; sha256="01lj7zxcijlibzjjvh70xq0qmjf8habqslxwj34h2chvffkakngg"; depends=[data_table ggplot2 glmnet quanteda spacyr stringr textir tm]; };
+  pollen = derive2 { name="pollen"; version="0.71.0"; sha256="0g0g6n8y87jyk7l4s6xpdk60dz4lkg2xp5c5agakkrah8a233920"; depends=[dplyr lubridate purrr]; };
+  pollimetry = derive2 { name="pollimetry"; version="1.0.0"; sha256="11a1ksbf9mgdp0yn823kiwka7vi5d93ivv7zsmhvjinmh3pxn1zb"; depends=[brms repmis]; };
   pollstR = derive2 { name="pollstR"; version="2.0.1"; sha256="13g5z1hix1bmsxznq5qx82yf445rvvyn67ch9bihxm1hr4cr4sbl"; depends=[httr lubridate purrr stringr]; };
-  polmineR = derive2 { name="polmineR"; version="0.7.8"; sha256="18dg0p74drc9awgiwsy3wkdc3z350kvsdsjhnm35047kqg67v2bc"; depends=[data_table DT jsonlite Matrix pbapply R6 RcppCWB slam stringi tm xml2]; };
+  polmineR = derive2 { name="polmineR"; version="0.7.10"; sha256="0ynb9gpphwm1inyagxj5kfn15jbl0paydfy6hcjm4912ncf5bvri"; depends=[data_table DT jsonlite knitr Matrix pbapply R6 RcppCWB slam stringi tm xml2]; };
   polspline = derive2 { name="polspline"; version="1.1.13"; sha256="08hz6wlaipjss3cfk0dvr7yy6fc7cd4hqv9finj40kkm5n262xck"; depends=[]; };
-  polyCub = derive2 { name="polyCub"; version="0.6.1"; sha256="16nr83gmv6pnk89nqxh8ihzacb0y8l4lz05c8sp6whmr26ja9vnf"; depends=[sp]; };
-  polyPK = derive2 { name="polyPK"; version="3.0.0"; sha256="1vdfsad2b9habvm2ikjgn7ihnm851q9lqmgqjlsl737ka1vsgisf"; depends=[circlize corrplot gplots Hmisc impute imputeLCMD mixOmics pcaMethods pkr plyr ropls samr sqldf xlsx]; };
+  polyCub = derive2 { name="polyCub"; version="0.7.0"; sha256="0cigzpdas6alr3fc6w7dhn2pf4n5qc1jmvdjlqw4mvpajn034hid"; depends=[sp]; };
+  polyPK = derive2 { name="polyPK"; version="3.1.0"; sha256="0cb83sq8iz4swr73vwhh8n4k62p6321nsy1sz5fba0wiicycxf55"; depends=[circlize corrplot gplots Hmisc impute imputeLCMD mixOmics pcaMethods pkr plyr ropls sqldf xlsx]; };
+  polyRAD = derive2 { name="polyRAD"; version="0.5-0"; sha256="1g3s12x6m6v3mqz82xssyxh0kzjq2kx6p1bw2z5px06px4d8m7dx"; depends=[fastmatch pcaMethods Rcpp]; };
   polySegratio = derive2 { name="polySegratio"; version="0.2-5"; sha256="0djw49mbhd7x6jr0f5qkb9akw3fw3ax4w9xv8iwa5f65q5gbxpdf"; depends=[gdata]; };
   polySegratioMM = derive2 { name="polySegratioMM"; version="0.6-4"; sha256="162xj52566kaxgfk7c14170xx07isyjmqb9skvhrdg7sz20lc3l1"; depends=[coda gtools lattice polySegratio]; };
   polyaAeppli = derive2 { name="polyaAeppli"; version="2.0"; sha256="0kyz3ap92xz7aqyviyrpggfmicy1gybrx7y19djsmixcwz53zqch"; depends=[]; };
   polyapost = derive2 { name="polyapost"; version="1.5"; sha256="0r2h51l2y0sj0xahdzfy1lyq4kh166crh2j02sk85q577q9d883y"; depends=[boot rcdd]; };
   polychaosbasics = derive2 { name="polychaosbasics"; version="1.1-1"; sha256="1kw5c4dmgpkbk2a30hh5n6xqpnbh6q2swxsdjkmcmhkwrzm4ylm2"; depends=[lhs MASS]; };
-  polyclip = derive2 { name="polyclip"; version="1.9-0"; sha256="0c4xf5m1amig0glnq3nczrl3fww0g57xwkgb6qnkyc7l7chin9ac"; depends=[]; };
+  polyclip = derive2 { name="polyclip"; version="1.9-1"; sha256="0r5izja3ns39as40al04vl4jz17d6cgbsb4sj16c9z9l3fzpimf5"; depends=[]; };
   polycor = derive2 { name="polycor"; version="0.7-9"; sha256="0d0756faksviic5jrc47fg6l3wsm9r2wlbnxiw08563rv7shbvb7"; depends=[Matrix mvtnorm]; };
   polyfreqs = derive2 { name="polyfreqs"; version="1.0.2"; sha256="13859vbpys5yj1qiapyzv9wlvi6x6k0rm335bsi1v07ch3x2bh3b"; depends=[Rcpp]; };
   polyglot = derive2 { name="polyglot"; version="0.1.2"; sha256="01sb3ilr58252yw0b2669vjdf8574br0n2n0ffwd86gc9f3islb3"; depends=[]; };
-  polymapR = derive2 { name="polymapR"; version="1.0.16"; sha256="0j9zsgm4v78scsl4bblrf2rs691296p1sdimqqzs03d56cgaky04"; depends=[combinat doParallel foreach igraph knitr MDSMap]; };
+  polymapR = derive2 { name="polymapR"; version="1.0.17"; sha256="148mnkarrc9k15vy82f2wma6was8p41hg7wlv2kc50sn30v5gkwa"; depends=[combinat doParallel foreach igraph knitr MDSMap]; };
   polynom = derive2 { name="polynom"; version="1.3-9"; sha256="1s4xxv5rvpigawknvq27v9vzvs83phfsj5h8mim2lmf5bj950nnk"; depends=[]; };
   polypoly = derive2 { name="polypoly"; version="0.0.2"; sha256="00c1hrnf575awvh0rlsnf6nkgi9p3fnqhd1knamkgb4icwi5s46d"; depends=[ggplot2 reshape2 rlang tibble]; };
   polysat = derive2 { name="polysat"; version="1.7-3"; sha256="155zcrjvpnqdzakmxqds17wmn5kl4rrkv9bqlxq8hrrly3nf6ynz"; depends=[Rcpp]; };
   polywog = derive2 { name="polywog"; version="0.4-1"; sha256="02qk1cyvkd77mwlvhj1zzzi0bmy7qxz29j2v730wp7rz4w7h5x5n"; depends=[foreach Formula glmnet iterators Matrix miscTools ncvreg Rcpp stringr]; };
   pom = derive2 { name="pom"; version="1.1"; sha256="02jv19apn0kmp1ric2cxajlaad2fmsz4nm4izd2c3691vzas7l83"; depends=[matrixcalc]; };
-  pomp = derive2 { name="pomp"; version="1.17"; sha256="0f7706hgpa70b5l1p34yq57fqyk4w55z8d5rvsv03m2cxilngc9k"; depends=[coda deSolve digest mvtnorm nloptr subplex]; };
-  pompom = derive2 { name="pompom"; version="0.1.4"; sha256="0j37gq6lfccypclhrp7w3yfgsjbhfgqwg7x87r6rgywz6b3fnsgh"; depends=[ggplot2 lavaan qgraph reshape2]; };
+  pomp = derive2 { name="pomp"; version="1.18"; sha256="0x77vx09ps4p1ihcd6yb4halr8jsq67d8zc04hp6vqkk0s7ycvyx"; depends=[coda deSolve digest mvtnorm nloptr subplex]; };
+  pompom = derive2 { name="pompom"; version="0.2.0"; sha256="1alz3lrj7m16vhymsvvrcmf0kmgx88q2f3v4j6wiciqv77bnyai1"; depends=[ggplot2 lavaan qgraph reshape2]; };
   pooh = derive2 { name="pooh"; version="0.3-2"; sha256="0qwa5j91aypasvsf4xcfbl6lz7llawdr38jiflzmfak2ad72rv7j"; depends=[]; };
   pool = derive2 { name="pool"; version="0.1.4.1"; sha256="1a8kyfwylr8gl2z2w2fmf6657yqvw0ylf1pxg00flddf8fnwbh0w"; depends=[DBI dbplyr dplyr later R6]; };
-  poolfstat = derive2 { name="poolfstat"; version="0.0.1"; sha256="1g6qx4518cr77wdlbicda68jm2yji24h14mjv5sq7zq241h4ailh"; depends=[]; };
+  poolVIM = derive2 { name="poolVIM"; version="1.0.0"; sha256="19yw6pp5l3jmla4wjbvpjq132f645yks49pzsdv123f3qfr8f0m6"; depends=[EmpiricalBrownsMethod Hmisc ranger]; };
+  poolfstat = derive2 { name="poolfstat"; version="1.0.0"; sha256="15s9zs13x9w5lxxibkpg40sg2hgaqfx1gbcpdq4yb0zpjpjlg9x1"; depends=[]; };
   pooling = derive2 { name="pooling"; version="1.1.1"; sha256="0011w80pxz01scj2sa69m1bcfq797hq3ihpw46fdlxsxavz8prwy"; depends=[cubature dplyr dvmisc ggplot2 ggrepel mvtnorm pracma]; };
   pop = derive2 { name="pop"; version="0.1"; sha256="0hbxdrkasb69x7ipddvyrzl5vvc7dd6rzj1vy7v3chg3rzgq89cj"; depends=[igraph MASS]; };
   pop_wolf = derive2 { name="pop.wolf"; version="0.1"; sha256="19n00xv47v9j7slvm2ykzlksjfwjzimf88b3nk0y0192c29sdc9x"; depends=[abind]; };
@@ -9814,18 +10235,22 @@ in with self; {
   popdemo = derive2 { name="popdemo"; version="1.3-0"; sha256="0760ajqaq822m0j092gdqzhgw1mk413k09mmmwyzb0jzj6bd15q3"; depends=[expm MCMCpack]; };
   popkin = derive2 { name="popkin"; version="1.0.5"; sha256="147ic0d7cgs4x9vz4jm4wd6ckikn0s8a0q1mknmcrcfisq8zim75"; depends=[RColorBrewer Rcpp RcppEigen]; };
   poplite = derive2 { name="poplite"; version="0.99.19"; sha256="0y1l21clp9b5m50chqnqmvyd6rsk6xgn2bqf1877gx3h1qidh5fm"; depends=[DBI dbplyr dplyr igraph lazyeval RSQLite]; };
-  poppr = derive2 { name="poppr"; version="2.8.0"; sha256="132lfxcdqxhh3f09sdgwas4372yrqcflws936fqyp0isg59siyzx"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph magrittr pegas phangorn polysat rlang shiny vegan]; };
+  poppr = derive2 { name="poppr"; version="2.8.1"; sha256="1pl6lqbcrqrzz28cs70ki8bp749af4b8a9dk1bcdwg290vxzqywp"; depends=[ade4 adegenet ape boot dplyr ggplot2 igraph magrittr pegas phangorn polysat rlang shiny vegan]; };
   popprxl = derive2 { name="popprxl"; version="0.1.4"; sha256="076aia4qbq5yw2nxafq2ys5n5c7wv77i8k1nmzb3all193vjf203"; depends=[poppr readxl]; };
   popsom = derive2 { name="popsom"; version="4.2"; sha256="11d6z3qsq94k0557pnwa0h4pc718360lvg9jkblp8abnj52lcvvv"; depends=[class fields ggplot2 som]; };
   poptrend = derive2 { name="poptrend"; version="0.1.0"; sha256="0hypxpb18azg6q1mqrphbx3x262h9ybwhlkb8fyd6vr7jjb5wn3h"; depends=[mgcv]; };
   population = derive2 { name="population"; version="0.2"; sha256="1k0hwh17dyfbbyw8gprsz1klx6l2ncq5mxkmnjmknlnrkpah0bbl"; depends=[abind]; };
-  populationPDXdesign = derive2 { name="populationPDXdesign"; version="1.0.2"; sha256="00xfpfd1ly2cv82x5r9sy1h7gq2yhhw2gz0sw3z1cpk9vxzvr6d9"; depends=[devtools ggplot2 plyr roxygen2 shiny shinycssloaders]; };
-  portes = derive2 { name="portes"; version="2.1-4"; sha256="09liy2bia76h5dh21s8skq9pj8k4wpq5agwrmr1pnvlpgc8m2b60"; depends=[]; };
+  populationPDXdesign = derive2 { name="populationPDXdesign"; version="1.0.3"; sha256="0p73ddv3j1s1vs4j3axnsf39n626qjv0w1qlq9p7km4s6729bhgv"; depends=[devtools ggplot2 plyr roxygen2 shiny shinycssloaders]; };
+  portes = derive2 { name="portes"; version="3.0"; sha256="144fipskh6yb6xcz3m5bgh2kwjwa58zaw24y88hzzrdvh9glvyrc"; depends=[forecast]; };
   portfolio = derive2 { name="portfolio"; version="0.4-7"; sha256="0gs1a4qh68xsvl7yi6mz67lamwlqyqjbljpyax795piv46kkm06p"; depends=[lattice nlme]; };
+  portfolio_optimization = derive2 { name="portfolio.optimization"; version="1.0-0"; sha256="1rdhwffsjc1pa1qq7rqy6dwk8yrcblkmijz94p2w7sf2v4jmwxxr"; depends=[magrittr MASS modopt_matlab xts]; };
   portfolioSim = derive2 { name="portfolioSim"; version="0.2-7"; sha256="1vf46882ys06ia6gfiibxx1b1g81xrg0zzman9hvsj4iky3pwbar"; depends=[lattice portfolio]; };
+  portsort = derive2 { name="portsort"; version="0.1.0"; sha256="0swl39dn7lzwvps18bva4l64a441gkf6lbwcwrhlf93f1ardvxji"; depends=[xts zoo]; };
   postGIStools = derive2 { name="postGIStools"; version="0.2.2"; sha256="1d1igv17bj17d0nmavvn5814nqb7k0hs2cjbaqgjd6ip1wcclfxz"; depends=[DBI jsonlite rgdal rgeos RPostgreSQL sp stringr]; };
+  postal = derive2 { name="postal"; version="0.1.0"; sha256="1cg9fyiraawxmmfm15lzxwv7pqizjbyrr5aqm8aqrg928ynjy3q9"; depends=[curl dplyr glue janitor jsonlite lubridate magrittr purrr readr stringr tibble tidyr]; };
   postlightmercury = derive2 { name="postlightmercury"; version="1.2"; sha256="1345ckp50jplcdqp3a250c6mhapqh9322jzpxj5dyqmbg2nmgp9i"; depends=[crul jsonlite purrr rvest tibble xml2]; };
   potts = derive2 { name="potts"; version="0.5-7"; sha256="194996wr4rnpr42xqfi5yrcnxvd82all2fxki95dklr2qfjxg98a"; depends=[]; };
+  powdR = derive2 { name="powdR"; version="0.1.0"; sha256="0a2n33x16920v3z909hcnkdi6hp2id3j89svn2qp9g57f9md0hi1"; depends=[ggplot2 ggpubr plotly reshape shiny]; };
   powdist = derive2 { name="powdist"; version="0.1.4"; sha256="1my88ag5q9hwkn2wy79jl9008gpvg0bsrnyc81gkdfi7pjh2mp1z"; depends=[gamlss_dist normalp rmutil]; };
   poweRlaw = derive2 { name="poweRlaw"; version="0.70.1"; sha256="04sr0nhdd1v915m0zf5gasznzgi08ykcy20kkwdw0l5mvvdbic8m"; depends=[VGAM]; };
   powell = derive2 { name="powell"; version="1.0-0"; sha256="160i4ki3ymvq08szaxshqlz7w063493j5zqvnw6cgjmxs7y0vj8y"; depends=[]; };
@@ -9836,39 +10261,39 @@ in with self; {
   powerMediation = derive2 { name="powerMediation"; version="0.2.9"; sha256="1rk8h8qn4b68ra5h5hiy9fvvbpskj9y806rwrvl1l7gs7xlmji7l"; depends=[]; };
   powerSurvEpi = derive2 { name="powerSurvEpi"; version="0.1.0"; sha256="1xxicvw113mc2y889rklws3xml5z64sgjpn4wg95gbw6nadch7zz"; depends=[survival]; };
   powerbydesign = derive2 { name="powerbydesign"; version="1.0.4"; sha256="0xd4hylx7jl4ksycz5gfjcgy92mh5c9d4r34ap1g81ybmyk7yrsj"; depends=[gdata ggplot2 lme4 MASS plyr reshape2 stringr]; };
-  powerlmm = derive2 { name="powerlmm"; version="0.3.0"; sha256="1prg1dw0pzyz4vc7a936bgx56227ab34b3ipwxn1mm8n03xk1zqc"; depends=[lme4 MASS Matrix scales]; };
+  powerlmm = derive2 { name="powerlmm"; version="0.4.0"; sha256="0dpfvbp54lhz7ibzihqqrbl45s6dqxn6qyvv39mk2166hjcgi1h2"; depends=[lme4 MASS Matrix scales]; };
   powerpkg = derive2 { name="powerpkg"; version="1.5"; sha256="0mbk2fda2fvyp1h5lk5b1fg398xybbjv0z6kdx7w7xj345misf7l"; depends=[]; };
   powerplus = derive2 { name="powerplus"; version="3.1"; sha256="0ayp6x34hkzgris4j3zbbs0r23n81bhww3wgfyy630ri4sk6brrn"; depends=[complexplus expm MASS Matrix phonTools]; };
   ppcSpatial = derive2 { name="ppcSpatial"; version="0.2.0"; sha256="1gi57zngc42wcrihg29nn7qa3gaq105ckp76qmczkldshlpd7x4r"; depends=[dplyr ggplot2 htmltools htmlwidgets leaflet magrittr PakPC2017 rgdal scales shiny tidyr tmap]; };
   ppcc = derive2 { name="ppcc"; version="1.0"; sha256="022c8w7ws7fw6yy572rn6m8ki14d2ph7nd2hk2c6mmx2c4lbc20v"; depends=[]; };
   ppclust = derive2 { name="ppclust"; version="0.1.1"; sha256="10fcyayda634lg5g992g21casqx5k0jni9r30km5rczzib7cz9gg"; depends=[inaparc MASS]; };
   ppcor = derive2 { name="ppcor"; version="1.1"; sha256="1x9b2kb8s0bp92b17gby0jwzzr3i4cf3ap9c4nq7m8fav72g0y3a"; depends=[MASS]; };
+  ppgmmga = derive2 { name="ppgmmga"; version="1.0.1"; sha256="16pvpfx353wjn317d3gxfgv6g20prnzwyqrmk0n4pz646mxq9i19"; depends=[cli crayon GA ggplot2 ggthemes mclust Rcpp RcppArmadillo]; };
   ppitables = derive2 { name="ppitables"; version="0.2.0"; sha256="097rrkgv1xvn00gcmv9mfy4qwx4f4wjaj4j0c2az6smkhnzyr37n"; depends=[tibble tidyr]; };
-  ppls = derive2 { name="ppls"; version="1.6-1"; sha256="1r3h4pf79bkzpqdvyg33nwjabsqfv7r8a4ziq2zwx5vvm7mdy7pd"; depends=[MASS]; };
+  ppls = derive2 { name="ppls"; version="1.6-1.1"; sha256="1zyrisy3c4cz896j1bjh61sf57wdl9p8ywdq268cl819szfq78mx"; depends=[MASS]; };
   ppmlasso = derive2 { name="ppmlasso"; version="1.1"; sha256="1w13p1wjl1csds1xfc79m44rlym9id9gwnp3q0bzw05f35zbfryg"; depends=[spatstat]; };
   pps = derive2 { name="pps"; version="0.94"; sha256="0sirxpagqc2ghc01zc6q4dk691six9wkgknfbwaqxbxvda3hcmyq"; depends=[]; };
   ppsbm = derive2 { name="ppsbm"; version="0.2.2"; sha256="0y4whxv14jqx7mqxj7n427vpbxb5rkwj8xvx0mj4knnwy9v437z4"; depends=[clue gtools Rfast]; };
   pqantimalarials = derive2 { name="pqantimalarials"; version="0.2"; sha256="0azxkf1rvk9cyzr4gbp4y2vcxrxw3d4f002d5gjkvv1f4kx8faw1"; depends=[plyr RColorBrewer reshape2 shiny]; };
   prLogistic = derive2 { name="prLogistic"; version="1.2"; sha256="1abwz7nqkz2qbyqyr603kl9a3rkad3f4vxhck6a9kl80xrmfrj9s"; depends=[boot Hmisc lme4]; };
   prabclus = derive2 { name="prabclus"; version="2.2-6"; sha256="0qjsxrx6yv338bxm4ki0w9h8hind1l98abdrz828588bwj02jya1"; depends=[MASS mclust]; };
-  pracma = derive2 { name="pracma"; version="2.1.4"; sha256="1ygm81i7mqvh229dp9935djjyb120p3bqvaf4k572sa4q63fzjhc"; depends=[]; };
+  pracma = derive2 { name="pracma"; version="2.1.8"; sha256="0m8ladhrfyxwybblkcdgg4xv1mk5kibmwarpj2k0c2y34zzcix4z"; depends=[]; };
   pragma = derive2 { name="pragma"; version="0.1.3"; sha256="1n30a346pph4d8cj4p4qx2l6fnwhkxa8yxdisx47pix376ljpjfx"; depends=[]; };
-  prais = derive2 { name="prais"; version="0.1.1"; sha256="0vv6h12gsbipi0gnq0w6xh6qvnvc0ydn341g1gnn3zc2n7cx8zcn"; depends=[]; };
+  prais = derive2 { name="prais"; version="1.0.0"; sha256="176878dyfqfx9x2cd97c43qb0gn0rs04jn3268n9yksfsxmrr4wx"; depends=[]; };
   praise = derive2 { name="praise"; version="1.0.0"; sha256="1gfyypnvmih97p2r0php9qa39grzqpsdbq5g0fdsbpq5zms5w0sw"; depends=[]; };
   praktikum = derive2 { name="praktikum"; version="0.1"; sha256="0kkydgglvqw371fxh46fi86fmdndhwq1n8qj0ynbh2gz1cn86aw1"; depends=[]; };
   praznik = derive2 { name="praznik"; version="5.0.0"; sha256="01xbhcgvq6mf89ryh2gif7aa9956kpka3j4mqaxlglxs53vdrfnk"; depends=[]; };
-  prc = derive2 { name="prc"; version="2018.1-31"; sha256="0xvf1f202qwpjb1kh469jk45l592q7bfzngyi8ifry94bi7mphp7"; depends=[kyotil nlme]; };
+  prc = derive2 { name="prc"; version="2018.8-17"; sha256="13w6nqid3dqmzr39g14g0kgx727qvimyb20x0i206lj37cl347i2"; depends=[kyotil nlme]; };
   prcbench = derive2 { name="prcbench"; version="0.7.3"; sha256="0xdmwjhxpcdaiqawhmlpr4ddlx22xk3rywa70jpm1vk5hc9pwivk"; depends=[assertthat ggplot2 gridExtra memoise precrec PRROC R6 rJava ROCR]; };
   prclust = derive2 { name="prclust"; version="1.3"; sha256="0p0sf8248aigs99py8mpzz743jnrf7n1nv5shag15arxz9yx7zn3"; depends=[Rcpp]; };
   prcr = derive2 { name="prcr"; version="0.1.5"; sha256="1hfr0jijnj5nd25rh16i81bsz8kwz0q9vmn7bqgy467cwvypg9k2"; depends=[class dplyr ggplot2 irr lpSolve purrr tibble tidyr]; };
-  pre = derive2 { name="pre"; version="0.5.0"; sha256="04dfn9nd0ikilz7cf7q0y7z5dn961jjg1gby7h46fixkwnf7fdfs"; depends=[earth Formula glmnet partykit rpart stringr]; };
+  pre = derive2 { name="pre"; version="0.6.0"; sha256="19dxm2khdw9cizxm06z41ywl2imrc9nw42ldcpjm30qfa0xqldjn"; depends=[earth Formula glmnet partykit rpart stringr survival]; };
   preText = derive2 { name="preText"; version="0.6.2"; sha256="0pcnqssv542cfajzrqfsbq0jf628nnmcb3nryvd7d5wk4wdkji4q"; depends=[cowplot ecodist ggplot2 proxy quanteda reshape2 topicmodels vegan]; };
   precintcon = derive2 { name="precintcon"; version="2.3.0"; sha256="1sf0mfqa77aqhbx3hg8pv582ibmfnv6vigqcd3xqsbq7nigy2ms9"; depends=[ggplot2 scales]; };
   precrec = derive2 { name="precrec"; version="0.9.1"; sha256="0kppl4x8ji8hzll5wss1nzlk8qvf4g78f14x4c2b8dcxjikgl939"; depends=[assertthat data_table ggplot2 gridExtra Rcpp]; };
-  predatory = derive2 { name="predatory"; version="1.2"; sha256="1qbkifx16ixzimshm8lsg3d1y7cj453ksn8cpwy03xql6b19r8x4"; depends=[readr stringr]; };
   prediction = derive2 { name="prediction"; version="0.3.6"; sha256="19d7312f5lkqfglfvlgssnvyw7gl161s0xradcry44r1i6qp05j1"; depends=[data_table]; };
   predictionInterval = derive2 { name="predictionInterval"; version="1.0.0"; sha256="029hc57cblfcbqckrghf95l2rkn7acgb4yr36da01bx8bmpww0bn"; depends=[ggplot2 MASS MBESS pbapply]; };
-  predictmeans = derive2 { name="predictmeans"; version="0.99"; sha256="1qfqh21d3m0k2491hv5rl5k4v49j5089xsdk3bxicp30l512rax0"; depends=[ggplot2 lattice lme4 nlme pbkrtest plyr]; };
+  predictmeans = derive2 { name="predictmeans"; version="1.0.1"; sha256="06zspg1v0x1qqaah7xj5jdaqjv7asnzmgybyyzx3j26v4h59p350"; depends=[ggplot2 lme4 Matrix nlme numDeriv pbkrtest plyr]; };
   predkmeans = derive2 { name="predkmeans"; version="0.1.0"; sha256="1xmzdv35hxnslffkj8nbahhxrxmv7995pkdq2igw72x9wbryqlhs"; depends=[e1071 maxLik mgcv Rcpp RcppArmadillo]; };
   predmixcor = derive2 { name="predmixcor"; version="1.1-1"; sha256="0v99as0dzn0lqnbbzycq9j885rgsa1cy4qgbya37bbjd01b3pykd"; depends=[]; };
   predtoolsTS = derive2 { name="predtoolsTS"; version="0.1.1"; sha256="0f9fapw9yjdzj6pwcskbyfwjsvg09ahn20vrv4bgi0dx8am291rl"; depends=[caret forecast Metrics tseries TSPred]; };
@@ -9884,20 +10309,20 @@ in with self; {
   presens = derive2 { name="presens"; version="2.1.0"; sha256="175nr9pqn3m6kh9bcc1gxqmqv05xdsqdw9lx385lmm1g947d2159"; depends=[marelac measurements]; };
   preseqR = derive2 { name="preseqR"; version="4.0.0"; sha256="1g2rnnmi45649vpy6z45v5i3wxm54s138ajqrzwi3a5r7x3xnhq1"; depends=[polynom]; };
   prettyGraphs = derive2 { name="prettyGraphs"; version="2.1.5"; sha256="19jag5cymancxy5lvkj5mkhdbxr37pciqj4vdvmxr82mvw3d75m4"; depends=[]; };
-  prettyR = derive2 { name="prettyR"; version="2.2"; sha256="026cgbrqs799lg06qlwx1r9ramil790qxrb1cyl4w7mzf8sfpgn9"; depends=[]; };
-  prettycode = derive2 { name="prettycode"; version="1.0.1"; sha256="0iw38q5yx92m71wrbp52d14bl3nqwpjrd57l2w9chasmlrjnl2aw"; depends=[crayon withr]; };
+  prettyR = derive2 { name="prettyR"; version="2.2-2"; sha256="01p0g68c6k5hd4a80gmdsqd5sxy6n521ry5sh6iz06f0rbl3jlcf"; depends=[]; };
+  prettycode = derive2 { name="prettycode"; version="1.0.2"; sha256="0yz75qqpvrk4p9mypjnmrg1xwlrhh2iax2897f11cfk8rjj784jg"; depends=[crayon withr]; };
   prettydoc = derive2 { name="prettydoc"; version="0.2.1"; sha256="00amqn0izg2jrn96pmm5papqmp0chn25msjk94nim3avqg9x4x92"; depends=[rmarkdown]; };
   prettymapr = derive2 { name="prettymapr"; version="0.2.2"; sha256="151jp0l728krmxcyzwjh01mvd1zhqijq0nsgjaqsh0q8n3jmndi0"; depends=[digest httr plyr rjson]; };
   prettyunits = derive2 { name="prettyunits"; version="1.0.2"; sha256="0p3z42hnk53x7ky4d1dr2brf7p8gv3agxr71i99m01n2hq2ri91m"; depends=[assertthat magrittr]; };
   prevR = derive2 { name="prevR"; version="3.3"; sha256="11syifnv0mgbybsphgaj3a2j29p2q0l4y4w008n2r9s359arjj8m"; depends=[directlabels fields foreign GenKern ggplot2 gstat maptools rgdal sp]; };
   prevalence = derive2 { name="prevalence"; version="0.4.0"; sha256="0vnmglxj1p66sgkw4ffc4wgn0w4s281fk2yifx5cn4svwijv30q0"; depends=[coda rjags]; };
-  pricesensitivitymeter = derive2 { name="pricesensitivitymeter"; version="0.3.2"; sha256="0hmqhsbpf8sbk5285mm8g0gi0s7s05dzbdci4fp3xyjn30659gdr"; depends=[]; };
+  pricesensitivitymeter = derive2 { name="pricesensitivitymeter"; version="0.4.1"; sha256="1mk6i4rjcm938rpwd3b80y9x4vj45jsddzprzrig91dmmjp6b11i"; depends=[]; };
   prim = derive2 { name="prim"; version="1.0.16"; sha256="0i5jpk798qbvyv9adgjbzpg4dvf7x51bcgbdp38fzdnam6g88y5a"; depends=[misc3d rgl]; };
   primefactr = derive2 { name="primefactr"; version="0.1.1"; sha256="11hi75jwjxrl9p5m8yjwjb20pc9y9vkhi8sjrnisdq2hm53m483w"; depends=[]; };
   primer = derive2 { name="primer"; version="1.0"; sha256="0vkq794a9qmz9klgzz7xz35msnmhdaq3f91lcix762wlchz6v7sg"; depends=[deSolve lattice]; };
   primerTree = derive2 { name="primerTree"; version="1.0.3"; sha256="0k81h6ln9yjg3r4j8n5f8g8xlrq1pvrr5ywrw16s4mjjhx3r1ylg"; depends=[ape directlabels foreach ggplot2 gridExtra httr lubridate plyr scales stringr XML]; };
   primes = derive2 { name="primes"; version="0.1.0"; sha256="0hhkgpkadvai9xcivfalsvr5w0irsxygyz3p2zngwl3g5rvvh5g9"; depends=[Rcpp]; };
-  princurve = derive2 { name="princurve"; version="2.0.3"; sha256="1yc14nychxk2ddhqd2v7cfpx5hgdspxcrg42kvs5jvic54dbjjc2"; depends=[Rcpp]; };
+  princurve = derive2 { name="princurve"; version="2.1.3"; sha256="12ngs63n6qjx08ks99h8m2nyr3h8ygznq5j8ag6ic8p65pis5pdp"; depends=[Rcpp]; };
   prinsimp = derive2 { name="prinsimp"; version="0.8-8"; sha256="074a27ml0x0m23hlznv6qz6wvfqkv08qxh3v1sbkl9nxrc7ak4vn"; depends=[]; };
   printr = derive2 { name="printr"; version="0.1"; sha256="13yqqcwfqnbhvcxwrr6j45qhnbxng3qwn2ygkr809gibg9grw471"; depends=[knitr]; };
   prioritizr = derive2 { name="prioritizr"; version="4.0.2"; sha256="1v5bkarsgi40w9afalsjfgl7azd1q4lzwr0ipw761cnqcnhkkmkh"; depends=[ape assertthat BH data_table doParallel igraph magrittr Matrix plyr proto raster Rcpp RcppArmadillo rgeos sp tibble uuid]; };
@@ -9907,22 +10332,25 @@ in with self; {
   prisonbrief = derive2 { name="prisonbrief"; version="0.1.0"; sha256="1fnhg6vqdabdnhvgd19vnkfrdgz8a53snfrx6m6mmdwb6cvavb8m"; depends=[data_table dplyr httr magrittr passport rlang rnaturalearth rnaturalearthdata rvest stringr tibble tidyr xml2]; };
   pro = derive2 { name="pro"; version="0.1.1"; sha256="0f0iliq7bhf313hi0jbwavljic4laxfc0n3gac5y6hzm39gvvgag"; depends=[]; };
   proPubBills = derive2 { name="proPubBills"; version="0.1"; sha256="1fpn9x31jjahdyk0f30mbb3ijj4dsghrq9q94r04pjsgr2jw23zx"; depends=[dplyr httr stringr]; };
+  prob = derive2 { name="prob"; version="1.0-1"; sha256="05qcrsl790hn7p3ap4zj5i1b1sf674wvvrh42lyb7a0nsc09iq9n"; depends=[combinat fAsianOptions]; };
   probFDA = derive2 { name="probFDA"; version="1.0.1"; sha256="093k50kyady54rkrz0n9x9z98z5ws36phlj42j25yip7pzhfd6sv"; depends=[MASS]; };
   probemod = derive2 { name="probemod"; version="0.2.1"; sha256="1cgjr03amssc9rng8ky4w3abhhijj0d2byzm118dfdjzrgmnrf9g"; depends=[]; };
   probout = derive2 { name="probout"; version="1.1.1"; sha256="1hasrvxdig8n3fhzsbmq27050dyanzp1j0qlybnrkb41k9gyljda"; depends=[FNN MASS mclust]; };
   probsvm = derive2 { name="probsvm"; version="1.00"; sha256="1k0zysym7ncmjy9h7whwi49qsfkpxfk7chfdjrydl6hn6pscis37"; depends=[kernlab]; };
   proccalibrad = derive2 { name="proccalibrad"; version="0.14"; sha256="0vr55rpcqh9wvy3bklssrimp42x85w3sanjgshfij657v68vmx46"; depends=[]; };
-  processanimateR = derive2 { name="processanimateR"; version="0.1.1"; sha256="1him2rdamg4q2kidc7a95pgihhcwfaz678cgdxgzz563dlgqkgac"; depends=[bupaR DiagrammeR DiagrammeRsvg dplyr htmlwidgets magrittr processmapR RColorBrewer rlang scales shiny shinycssloaders tidyr zoo]; };
+  processanimateR = derive2 { name="processanimateR"; version="0.3.0"; sha256="18bzn4x0aiv1z0ips2wkyb5pvdbq1fxh4mi430i44qn64z88wasi"; depends=[bupaR DiagrammeR dplyr htmlwidgets magrittr processmapR rlang scales zoo]; };
+  processcheckR = derive2 { name="processcheckR"; version="0.1.0"; sha256="1arckp3m9z9idq8dq6aghijc6h8i6giir606h1viivrwj0ks0f90"; depends=[bupaR dplyr edeaR glue rlang stringr]; };
   processcontrol = derive2 { name="processcontrol"; version="0.1.0"; sha256="0c0bksgq24blfkdgp5bn49sjnaajrg5bag8qzb5zffxbhnm4s30x"; depends=[plyr]; };
   processmapR = derive2 { name="processmapR"; version="0.3.2"; sha256="0j42791qarxrn5ianbndbx0rkq6av4gvrxjl92svzki1mv5cl59n"; depends=[bupaR data_table DiagrammeR dplyr edeaR forcats ggplot2 ggthemes glue hms miniUI plotly purrr RColorBrewer rlang scales shiny stringr viridis]; };
   processmonitR = derive2 { name="processmonitR"; version="0.1.0"; sha256="1ckr438yifpsh095j6bb65dq3rdm7cfm8k7qsjmcqwjkww4j74z8"; depends=[bupaR dplyr edeaR ggplot2 magrittr miniUI shiny]; };
-  processx = derive2 { name="processx"; version="3.1.0"; sha256="0wjr3cqwvnjxbvln25szffmkns5w0xysivdjr6chxap4nh515b0i"; depends=[assertthat crayon R6 testthat]; };
+  processx = derive2 { name="processx"; version="3.2.0"; sha256="1pzx4ap4xa07gf9zkd6hacdsnb9sp3kb60a7v7ljl0ywrcpn1fn4"; depends=[assertthat crayon ps R6]; };
   prodest = derive2 { name="prodest"; version="1.0.1"; sha256="16nqgd9wrjfxymwbxrnlak54cagbv3fxgbql0w5bxnmyrbbqy509"; depends=[AER DEoptim dplyr Matrix Rsolnp]; };
   prodigenr = derive2 { name="prodigenr"; version="0.4.0"; sha256="1rbfg3jzspw51lbhjbdy0wy5fgl3k3cnb324i73nbgjn7ycmpfqx"; depends=[clipr clisymbols crayon desc devtools fs git2r rmarkdown rprojroot usethis withr]; };
   prodlim = derive2 { name="prodlim"; version="2018.04.18"; sha256="1aslq87sqwikh8chxc378r38146y7kv79zz0kcq3j93ivx7va8jb"; depends=[KernSmooth lava Rcpp survival]; };
   productivity = derive2 { name="productivity"; version="1.1.0"; sha256="1g8b4vlyqq3xyzd4dki01glhc3g9j3ywgwpxylkmzp0ivqic53yc"; depends=[doParallel foreach iterators lpSolveAPI]; };
   productplots = derive2 { name="productplots"; version="0.1.1"; sha256="1igs6d0qwgsfk0z3vxabgv5kva9w2kpzi535gjfdrbx34j4pf3gx"; depends=[ggplot2 plyr]; };
   prof_tree = derive2 { name="prof.tree"; version="0.1.0"; sha256="0mjvxaacrgkzl0f1wn3fpgah4jh720safni66ri0dnriwcxis6rz"; depends=[data_tree]; };
+  profExtrema = derive2 { name="profExtrema"; version="0.2.0"; sha256="13fn32v4jryyw2sc6g76fmf2ivbwql0z39wqpl6ggmiwnj95sfm7"; depends=[DiceKriging KrigInv lhs MASS microbenchmark pGPx quantreg rcdd RColorBrewer]; };
   profdpm = derive2 { name="profdpm"; version="3.3"; sha256="07lhjavrx4fa5950w928mfpddmmnmvdapl5n6mv49m8h3bxs4nmy"; depends=[]; };
   profile = derive2 { name="profile"; version="1.0"; sha256="0m7fm490gqkbmnbdq3lac87zqb9qyx6546rlpa130rq1jnlgxfp6"; depends=[rlang tibble withr]; };
   profileModel = derive2 { name="profileModel"; version="0.5-9"; sha256="1p9b9jr5842im195d60ja82pp7vbk85vs8b0r3fnf62j4b92aky9"; depends=[]; };
@@ -9936,10 +10364,10 @@ in with self; {
   prognosticROC = derive2 { name="prognosticROC"; version="0.7"; sha256="0lscsyll41hpfzihdavygdzqw9xxjp48dmy4i17qsx5h01jl1h4i"; depends=[survival]; };
   progress = derive2 { name="progress"; version="1.2.0"; sha256="1rhwm0bdw30z3rvl0bn56xprjl3zrdy7150w4gl4bkvn2d6h9fav"; depends=[crayon hms prettyunits R6]; };
   proj4 = derive2 { name="proj4"; version="1.0-8"; sha256="06r3lavgixrsa52d1v31laqcbw6fb9xn23akv39hvaib78diglv9"; depends=[]; };
-  projections = derive2 { name="projections"; version="0.3.0"; sha256="1zhyylbp10g2syfj8mybr5cas68wf4h4fk3s7cca4iiihnglcfwz"; depends=[distcrete ggplot2 incidence]; };
+  projections = derive2 { name="projections"; version="0.3.1"; sha256="12vskql6x04jzik72a0vx83amfj01w9f7mxn052vsv7aaljbi124"; depends=[distcrete ggplot2 incidence]; };
   projector = derive2 { name="projector"; version="0.0.2"; sha256="15n5b2xgs0zj87pc3svlmnkjrxgkjkx941g8bs3ms90fg7nh2drc"; depends=[assertthat dbscan plotly RColorBrewer RcppAnnoy Rtsne shiny shinyjs shinythemes]; };
-  projmanr = derive2 { name="projmanr"; version="0.1.1"; sha256="0mmfmp5qf4r75q4hjbra2pxym77m16g28n94z5yj2qdzq46hgl4c"; depends=[ggplot2 igraph R6 tidyr]; };
-  projpred = derive2 { name="projpred"; version="0.8.0"; sha256="06wi8lc88xm45drqhb3mcq5l1g1zm2msgi1m0857vldg6828gjbq"; depends=[ggplot2 loo Rcpp RcppArmadillo rngtools rstan rstanarm]; };
+  projmanr = derive2 { name="projmanr"; version="0.2.1"; sha256="0pj2a79xnhkwik7lq1gm9jv30pkjgv057yd9nlmb58mf2097i7an"; depends=[ggplot2 igraph mc2d R6 Rcpp tidyr]; };
+  projpred = derive2 { name="projpred"; version="1.1.0"; sha256="03lfzlhrch7l87vmpfvyiggq12bzj45kkqp0dy307jnrvfzx9lb1"; depends=[ggplot2 loo Rcpp RcppArmadillo rngtools]; };
   promises = derive2 { name="promises"; version="1.0.1"; sha256="0n2mlv6bvfb4yhgcml696l9vkbw21pz0smqylivr606z99rwgny2"; depends=[later magrittr R6 Rcpp rlang]; };
   promote = derive2 { name="promote"; version="1.0.2"; sha256="0nxbwy6ls7bn0dqxa87a2gc74yvpyvsvn03q4v0sy3jmdyca0c73"; depends=[httr jsonlite stringr]; };
   prop_comb_RR = derive2 { name="prop.comb.RR"; version="1.2"; sha256="10s52fkq7rv6v4gw1yd46f0fbg89ksim0qhgb5jbglzrqh585ny5"; depends=[rootSolve]; };
@@ -9948,7 +10376,7 @@ in with self; {
   properties = derive2 { name="properties"; version="0.0-9"; sha256="1zd66cg31yd53rqsc0cwxhlpfn7kvc67qdh3vyj9qib8kwxaw1zl"; depends=[]; };
   prophet = derive2 { name="prophet"; version="0.3.0.1"; sha256="0ays7qn8vsa8kwzh5fk0b7nbd0l72yczjbg9h0ajkyywz3jda3fv"; depends=[dplyr dygraphs extraDistr ggplot2 Rcpp rstan scales tidyr xts]; };
   proportion = derive2 { name="proportion"; version="2.0.0"; sha256="0a71f6hz6blb7550m9x0di84vp51yjhnn952301rwlrh3axf6dbr"; depends=[ggplot2 TeachingDemos]; };
-  propr = derive2 { name="propr"; version="3.5.1"; sha256="0wja6snr1hd1ms3wzg6scvs30zip5kbq0jx2j31dxrmy6fwd4h2j"; depends=[fastcluster ggplot2 igraph Rcpp]; };
+  propr = derive2 { name="propr"; version="4.0.0"; sha256="1bqprryww8qhivklla2jv0ygy49321racs2msmw4g5y6gpi29593"; depends=[fastcluster ggplot2 igraph Rcpp]; };
   prospectr = derive2 { name="prospectr"; version="0.1.3"; sha256="18lh03xg6bgzsdsl56bjd63xdp16sqgr3s326sgifkkak8ffbv7q"; depends=[foreach iterators Rcpp RcppArmadillo]; };
   protViz = derive2 { name="protViz"; version="0.3.1"; sha256="1im3ajimycsc1zpzbihxlsibjk0462q0vldy7v5ypsqnjbi1ndxm"; depends=[Rcpp]; };
   proteomicdesign = derive2 { name="proteomicdesign"; version="2.0"; sha256="01s47pgwxy4xx10f3qmbfv59gbaj0qw017kpkpsn33s8w7ad63r0"; depends=[MASS]; };
@@ -9960,35 +10388,38 @@ in with self; {
   protolite = derive2 { name="protolite"; version="1.8"; sha256="05w5lgf255agj70qdyjm64ci9j0pncz0k0bxhq2cxjbkv09169lr"; depends=[jsonlite Rcpp]; };
   proton = derive2 { name="proton"; version="1.0"; sha256="1mgaw54is8l6ac1rf8s70rj7kv9xgsfdrlvjz01ggfwg7c6pyr3s"; depends=[digest]; };
   prototest = derive2 { name="prototest"; version="1.1"; sha256="0v65abrn73wgwnrrf6gv9f7p0qy12xlk9ishq9lq4qal1wlsrrjs"; depends=[glmnet intervals MASS Rcpp RcppArmadillo]; };
-  protr = derive2 { name="protr"; version="1.5-0"; sha256="1mi14hph6cqdsgjw4p00miaa4bh2axkwfcmxaiv7f7v4dk8i52y1"; depends=[]; };
+  protr = derive2 { name="protr"; version="1.5-1"; sha256="1hy10pd7lycnagjfbb8a6csprb1x0b30g5d0mwpp5jz2d1nadpgh"; depends=[]; };
   proustr = derive2 { name="proustr"; version="0.2.1"; sha256="17syaxfrwm9kh5q825hj7bsrvi4h9avpdabw9y0vq20y87w8cq1s"; depends=[assertthat dplyr magrittr purrr rlang SnowballC stringr tidyr tokenizers]; };
-  provenance = derive2 { name="provenance"; version="2.0"; sha256="1775dxxk506nwaigyjsvprf4fibmiamwp7p7cl01g3mbr4gyrm0z"; depends=[IsoplotR MASS]; };
+  provenance = derive2 { name="provenance"; version="2.2"; sha256="1g70s5pwgb3cvw4vgxxqp4gi5qi3d02ldq09n4kildms4shxgsmn"; depends=[IsoplotR MASS]; };
   proxy = derive2 { name="proxy"; version="0.4-22"; sha256="0l0ff8irmmvic941is290hd5vszyhaj5nfwna4v3w9c1zk5nr1ma"; depends=[]; };
-  prozor = derive2 { name="prozor"; version="0.2.3"; sha256="1686lfmzmzl1488xnppv95hfr83gf67xfzqsw49gdas0aba3plhh"; depends=[AhoCorasickTrie doParallel foreach Matrix plyr seqinr stringr]; };
+  prozor = derive2 { name="prozor"; version="0.2.11"; sha256="1a2k69fvgi6vxgczk81kh8r2jxc6nirc51w6ac239rqjzb1zyhjm"; depends=[AhoCorasickTrie doParallel dplyr foreach Matrix plyr readr seqinr stringr]; };
   prrd = derive2 { name="prrd"; version="0.0.2"; sha256="0ifs55yqvwbcs3xyc90yi763fgavdhajk1ba73g1kchn2ak39qhb"; depends=[config crayon data_table DBI liteq RSQLite]; };
   pryr = derive2 { name="pryr"; version="0.1.4"; sha256="06vj5xl9x37kbd3l5bw7sbgfdnp37spvrjrn976rxi04clqk966k"; depends=[codetools Rcpp stringr]; };
+  ps = derive2 { name="ps"; version="1.2.0"; sha256="0ai8igdkysmks1ihbp3h3s552da2hskxqwrvp4cx7vwn91x9f3wd"; depends=[]; };
   psData = derive2 { name="psData"; version="0.2.2"; sha256="013hb6lk9rm2w08m5jbw90ndrcd4wyy2h125jx07c9bs60wh4mp4"; depends=[countrycode DataCombine reshape2 rio xlsx]; };
   psbcGroup = derive2 { name="psbcGroup"; version="1.4"; sha256="0l1hmgw4sislryws8hv7r2nglhcs6g9khg0372a70djvhz2l6gfi"; depends=[LearnBayes mvtnorm SuppDists]; };
   pscl = derive2 { name="pscl"; version="1.5.2"; sha256="1phf3awsfr4ncqfqzin5m1pz0g7y1zhbcm2sz7358ssw914fd7rc"; depends=[MASS]; };
   pscore = derive2 { name="pscore"; version="0.1-2"; sha256="1sfkxs2kv8lq87j3q9ci7j38c7gzfkp2l36lwcdhiidr2nls2x0c"; depends=[ggplot2 lavaan reshape2]; };
   psd = derive2 { name="psd"; version="1.0-1"; sha256="1ssda4g98m0bk6gkrb7c6ylfsd2a84fq4yhp472n4k8wd73mkdn6"; depends=[RColorBrewer Rcpp RcppArmadillo signal zoo]; };
-  psda = derive2 { name="psda"; version="1.0.0"; sha256="0zsvm6rqcxv186xbi8nqd4ak93lhrm1hp7339cks140vdp8yl7ys"; depends=[ggplot2 plyr raster rgeos sp]; };
+  psda = derive2 { name="psda"; version="1.0.1"; sha256="0hqagrylfllc7mxbnsgxvc2qb3av1wh6ck7y0bs331s4paz0b2mc"; depends=[ggplot2 plyr raster rgeos sp]; };
   pse = derive2 { name="pse"; version="0.4.7"; sha256="0kigfzsvx3gw7jwym4f19dydwwarwxgmha7hpy54gg0zzi4k9icl"; depends=[boot Hmisc]; };
   pseudo = derive2 { name="pseudo"; version="1.4.3"; sha256="0ccf3gz2g7g5y4acpj2qnb39hrghhdganizlddg6rx7al869fffs"; depends=[geepack KMsurv]; };
-  pseudorank = derive2 { name="pseudorank"; version="0.2.0"; sha256="17zr5q76l0y57n7am3c6zg3cwrhcvv2l8q561jcasacp16yg4gy3"; depends=[doBy Rcpp]; };
+  pseudorank = derive2 { name="pseudorank"; version="0.3.7"; sha256="1wrf91z75yw88wy1b42z05z7lnykvnfkf8mi9li8108m4k9b13rk"; depends=[doBy Rcpp]; };
   pseval = derive2 { name="pseval"; version="1.3.0"; sha256="1iv3fa7ar9i7v9j5axbasmn8l8nvry4zvmb7fd8aql82f22szmbj"; depends=[survival]; };
   psgp = derive2 { name="psgp"; version="0.3-18"; sha256="1jfkqwqnmzj3m1d9gxbp2rjkbqb0di75gh78zg861by5qhhaz1a7"; depends=[automap doParallel foreach gstat intamap Rcpp RcppArmadillo rgdal sp]; };
-  psidR = derive2 { name="psidR"; version="1.5"; sha256="02cyy1dqgg6mcqyvb0py674lyhhk3h0zi9p02yqacbr81swsjpam"; depends=[data_table foreign httr openxlsx RCurl SAScii XML]; };
+  psidR = derive2 { name="psidR"; version="1.9"; sha256="0ljfjxsj6krxyk3ss1n0ccymca4hiwkp9fdb1h1l4rqm0dsj8jj8"; depends=[data_table foreign futile_logger openxlsx RCurl SAScii]; };
   pso = derive2 { name="pso"; version="1.0.3"; sha256="0alar695c6kc1rsvwipsrvlxc93f3sy9l0yhp0mggyqgxkkvy406"; depends=[]; };
   psoptim = derive2 { name="psoptim"; version="1.0"; sha256="1yziabkd3h05cfl5jy5l8ji2y3w21acvxsq3inxyh0iwyr8qdkkl"; depends=[]; };
   pspearman = derive2 { name="pspearman"; version="0.3-0"; sha256="1l5mqga7b5nvm6v9gbl1xsspdqsjqyhhdn4gc4qlz6ld7fqfq6cx"; depends=[]; };
   pspline = derive2 { name="pspline"; version="1.0-18"; sha256="1iwsw52miil1v1yl99mzl28qi8gdjr56rlasmh8faqjlpn9z477p"; depends=[]; };
   pssm = derive2 { name="pssm"; version="1.1"; sha256="0r3d1mzc7bcz238lqq4y518400m2dqm5a1fb9gkfiari1ax099lv"; depends=[abind MASS MHadaptive numDeriv]; };
+  pssmooth = derive2 { name="pssmooth"; version="1.0.1"; sha256="0g43fkls36lsv3z79326x6g1d370dym8879700lq29wl5fslp3an"; depends=[chngpt MASS np osDesign]; };
   pstest = derive2 { name="pstest"; version="0.1.1"; sha256="0k8413ilpbz23v210wz80mli7ajpc8p7y4pbn1za371qw04b81c5"; depends=[harvestr]; };
   psy = derive2 { name="psy"; version="1.1"; sha256="027whr670w65pf8f7x0vfk9wmadl6nn2idyi6z971069lf01wdlk"; depends=[]; };
   psych = derive2 { name="psych"; version="1.8.4"; sha256="1kzv9nc7rwn1sj1zxd8xrbs6c7qlka7j2c8lsr4f20znkd3qx8gf"; depends=[foreign lattice mnormt nlme]; };
-  psychmeta = derive2 { name="psychmeta"; version="2.1.1"; sha256="0sjsmzncbzqrhcmv221jliqvfhdd70ysrxax9dprsl8kyyvifvrl"; depends=[boot cli crayon data_table dplyr fungible ggplot2 knitr MASS metafor nor1mix progress purrr RCurl RefManageR reshape2 rlang rmarkdown stringi stringr tibble tidyr tmvtnorm xml2]; };
-  psycho = derive2 { name="psycho"; version="0.2.8"; sha256="0739y1svarfw6v4jrf3q6n0vnb6wfij9dnmvzvn87wg8rsp0bvrl"; depends=[BayesFactor broom coda DescTools dplyr emmeans ggcorrplot ggplot2 lavaan lmerTest loo MASS MuMIn nFactors pbkrtest ppcor psych purrr qgraph rstanarm rstantools scales stringr tibble tidyr]; };
+  psychReport = derive2 { name="psychReport"; version="0.2"; sha256="1pmxknfvrkwfsa1xw1a6nv9ms0ivrpm7pzzr7az8blj5hnpqm8d5"; depends=[cli crayon dplyr ez reshape2 testthat xtable]; };
+  psychmeta = derive2 { name="psychmeta"; version="2.2.1"; sha256="0x5yxzd78xfz9sbbzx4yxa1vbgwj70fiiiypkk0bai5wjhx40c8v"; depends=[boot cli crayon data_table dplyr ggplot2 knitr MASS metafor nor1mix progress purrr RCurl RefManageR reshape2 rlang rmarkdown stringi stringr tibble tidyr tmvtnorm xml2]; };
+  psycho = derive2 { name="psycho"; version="0.3.7"; sha256="0n9cj841mjf661cik6xyd7hhhw1dm0yshhg8fh3iq15gn88bgmqi"; depends=[BayesFactor broom coda DescTools dplyr emmeans ggcorrplot ggplot2 lavaan lme4 lmerTest loo MASS MuMIn nFactors ppcor psych purrr qgraph rstanarm rstantools scales stringr tibble tidyr]; };
   psychometric = derive2 { name="psychometric"; version="2.2"; sha256="1b7cx6icixh8k3bv60fqxjjks23qn09vlcimqfv2x3m3nkf8p1s9"; depends=[multilevel nlme]; };
   psychomix = derive2 { name="psychomix"; version="1.1-4"; sha256="15yk3z11w4bzk6vljr13bkfhzycypww6blc1djb5iwl635xq1c49"; depends=[flexmix Formula lattice modeltools psychotools]; };
   psychotools = derive2 { name="psychotools"; version="0.4-3"; sha256="023cfh9ks8cdk458g4yvjhdy8g9vkcabgpj24bcs46r8nga3adjv"; depends=[]; };
@@ -10001,10 +10432,11 @@ in with self; {
   ptw = derive2 { name="ptw"; version="1.9-13"; sha256="0iighsx6xn8nbw4qpzmwgi4czmr5m8yrr7fzm7mx7cvx2r5ffmbq"; depends=[nloptr]; };
   ptwikiwords = derive2 { name="ptwikiwords"; version="0.0.3"; sha256="129dad1vy52sf97dqrkwa49vjhv2kvs4pmd5zvq8pxd51hqm6wy9"; depends=[]; };
   ptycho = derive2 { name="ptycho"; version="1.1-4"; sha256="1llk3rpk0lf80vwvs23d6dqhgyic3a6sfjc393csj69hh01nrdvc"; depends=[coda plyr reshape2]; };
-  pubh = derive2 { name="pubh"; version="0.2.2"; sha256="13byp5xha102h9y8dhka4fz9gdan4gshcy6bvkgvkj106h7zhy4q"; depends=[bookdown car descr effects Epi epiR epitools gee lattice latticeExtra lme4 lmtest MASS multcomp nlme nnet ordinal pander papeR rmdformats sandwich survival]; };
-  pubmed_mineR = derive2 { name="pubmed.mineR"; version="1.0.12"; sha256="04zb5lbjdrhdpam4xmkcc947icsnias5pxbv2pwhvyhk7mz16nya"; depends=[boot R2HTML RCurl XML]; };
+  pubchunks = derive2 { name="pubchunks"; version="0.1.0"; sha256="1mi5vzm80fm0vbh9kmmsh7kmgc915i1f1yi2kyw2d3mg98jld9xj"; depends=[data_table xml2]; };
+  pubh = derive2 { name="pubh"; version="0.4.2"; sha256="1g5w600iwpazdm445xn8b22gdr0fx9pyjsignlhrvw65dw7pgykh"; depends=[bookdown car desctable effects Epi epiR epitools knitr latex2exp lattice latticeExtra lme4 lmtest MASS multcomp nlme nnet ordinal pander papeR sandwich survival tactile]; };
+  pubmed_mineR = derive2 { name="pubmed.mineR"; version="1.0.13"; sha256="17pb5y5savh9iga3i7pyp32j41jwfac0vl538gln3n371x5fjh2r"; depends=[boot R2HTML RCurl XML]; };
   pullword = derive2 { name="pullword"; version="0.2"; sha256="14rln0nbd4k2cvf18iwvc56776b9g3m3cs67i7fgzabfrgj8y6db"; depends=[RCurl]; };
-  pulsar = derive2 { name="pulsar"; version="0.3.3"; sha256="1lhc9cvxkxvjcl2hi2kivwqp4gddq32kysy1rhpi34i9w0y3gav6"; depends=[Matrix]; };
+  pulsar = derive2 { name="pulsar"; version="0.3.4"; sha256="076bakisgw2sv4mv9a21ky97zdz7wr733xylpdczmyyhhqi0n8yp"; depends=[Matrix]; };
   pumilioR = derive2 { name="pumilioR"; version="1.3.1"; sha256="1791r5lkr6hafd2rz9f9nfy5vc03c4833f292khvd2cg43sb0bfc"; depends=[RCurl XML]; };
   puniform = derive2 { name="puniform"; version="0.1.0"; sha256="16s5qk17wnag7fqgslxpayaq6nczaj2izgdkrkcssgjxfwnanzgm"; depends=[ADGofTest metafor Rcpp]; };
   purge = derive2 { name="purge"; version="0.2.1"; sha256="1faf8mkaxsnj63wnig5rs50hd3j6vzaj0xkdz8kn0j7y2vvshp9p"; depends=[]; };
@@ -10015,11 +10447,10 @@ in with self; {
   pvclass = derive2 { name="pvclass"; version="1.4"; sha256="1g6x75qz3xybq1xnik0hzi7mcs0gzzqd3f0iwfkzi5d1zcddnw13"; depends=[Matrix]; };
   pvclust = derive2 { name="pvclust"; version="2.0-0"; sha256="0hfpf257k5f1w59m0zq6sk0gaamflc3ldkw6qzbpyc4j94hiaihs"; depends=[]; };
   pvsR = derive2 { name="pvsR"; version="0.3"; sha256="1ijmqlcsc8z0aphdd3j37ci8yqsy50wnr2fwn7h8fxbyd12ax2nj"; depends=[httr nnet XML]; };
-  pweight = derive2 { name="pweight"; version="0.0.1"; sha256="0pxxfrap1bmnhbfbmkddfbqwkpw42hq37s0y26zmkxqlx4wblira"; depends=[qqman]; };
   pwr = derive2 { name="pwr"; version="1.2-2"; sha256="0r5g781lr677vp3zyhgmi7r68c87l8gd05l1s3ffnxgn5wf043sm"; depends=[]; };
   pwr2 = derive2 { name="pwr2"; version="1.0"; sha256="0zfv7z5yymw310r1sqm8ivsc2pv6dgk2k4b1axmm92gsaj53cn7p"; depends=[]; };
   pwrAB = derive2 { name="pwrAB"; version="0.1.0"; sha256="0ifyw40m9gsijw3vm9qb8qk4yydmdixfdpdp45x2hk93j8v61jm1"; depends=[]; };
-  pwrFDR = derive2 { name="pwrFDR"; version="1.90"; sha256="1lphq62k33wd1ay18gyl62yg6d57j2hhyk1pxz67qv5ywj73r34s"; depends=[]; };
+  pwrFDR = derive2 { name="pwrFDR"; version="1.95"; sha256="0xphr4zrn7cav66kw6g52nhc8vvxacvmflvzy32gqy5l7jc89f4q"; depends=[]; };
   pwrRasch = derive2 { name="pwrRasch"; version="0.1-2"; sha256="13fr4yfk8aky1vv36pllx673l4lg9q7i661vbyn2zabyizd2rw3b"; depends=[]; };
   pwt = derive2 { name="pwt"; version="7.1-1"; sha256="0926viwmwldmzlzbnjfijh00wrhgb0h4h0mlrls71pi5pjfldifa"; depends=[]; };
   pwt8 = derive2 { name="pwt8"; version="8.1-1"; sha256="1iig0x90ilzh3hdki0h33qgrra8r94rw4bk1x8y7i6c1may8y0v6"; depends=[]; };
@@ -10029,8 +10460,10 @@ in with self; {
   pycno = derive2 { name="pycno"; version="1.2"; sha256="0ha5css95xb98dq6qk98gnp1al32gy6w5fkz74255vs4hmkwfzw2"; depends=[maptools rgeos sp]; };
   pyinit = derive2 { name="pyinit"; version="1.0.2"; sha256="148b8l5a8c636rgm8dwd8v6ggw9qmkafc5a40bciqc4rk09lfhl3"; depends=[robustbase]; };
   pyramid = derive2 { name="pyramid"; version="1.4"; sha256="0hh0hmckicl0r2r9zlf693j65jr9jgmiz643j2asp57nbs99lgxz"; depends=[]; };
+  pysd2r = derive2 { name="pysd2r"; version="0.1.0"; sha256="1dqvgdxj6m683wkjyjhv685xnhl9328bm921zphm1i9p70fahs0n"; depends=[knitr reticulate tibble]; };
+  pzfx = derive2 { name="pzfx"; version="0.1.0"; sha256="1j4jrkn1qh6902xz0zmyj1y2nzpy2cbvv8qryb9gxm5jpk6zy97i"; depends=[xml2]; };
   qCBA = derive2 { name="qCBA"; version="0.3.1"; sha256="0lr97hig9c4l9k7vjalvgar4f1dic1lqf91li4q63j07lgdyvh4c"; depends=[arc arules rJava]; };
-  qGaussian = derive2 { name="qGaussian"; version="0.1.6"; sha256="0j8n4y4yzidkp52db73zv2snx0kwpg3aiz7vr82ybq3x9scy8c4n"; depends=[Rcpp robustbase zipfR]; };
+  qGaussian = derive2 { name="qGaussian"; version="0.1.8"; sha256="02xy35xg4swr1ldnsbywnz2h0ga1pbsivnj0aqmpll7kvwl9qz4c"; depends=[Rcpp robustbase zipfR]; };
   qLearn = derive2 { name="qLearn"; version="1.0"; sha256="1ilxmgazm8gjz8c1hhbp4fccibnvnalxrag8b0rn081zsqmhf094"; depends=[]; };
   qPCR_CT = derive2 { name="qPCR.CT"; version="1.1"; sha256="19j41fsd2m7p2nxi2h2mj43rjxx6sz2jpf4sk0bfvl1gyj0iz3hi"; depends=[RColorBrewer]; };
   qVarSel = derive2 { name="qVarSel"; version="1.0"; sha256="13x2hnqjsm0ifzmqkkl9ilhykrh80q04lhlkkp06hkysmh5w9rkx"; depends=[lpSolveAPI Rcpp]; };
@@ -10052,19 +10485,20 @@ in with self; {
   qgtools = derive2 { name="qgtools"; version="1.0"; sha256="0irqfaj2qqx7n1jfc0kmfpgzqrhwwlj0qizsmya94zk9d27bcpn5"; depends=[MASS Matrix]; };
   qha = derive2 { name="qha"; version="0.0.8"; sha256="0sdf6g6884wn73i237xkwszg2mq8xddhvyy225qzpplh5za4pnhl"; depends=[ade4 FactoClass FactoMineR]; };
   qicharts = derive2 { name="qicharts"; version="0.5.5"; sha256="0bl1f64b5n8q9jhzh3rqfyh9613qiy9mhcy2xsn16jyrj4hmj0jd"; depends=[ggplot2 lattice latticeExtra scales]; };
-  qicharts2 = derive2 { name="qicharts2"; version="0.4.0"; sha256="0dd7jn7g7b85yvq39ykl75jdixk3dpinscsizxqwcfcjyhpvszq6"; depends=[dplyr ggplot2 scales]; };
+  qicharts2 = derive2 { name="qicharts2"; version="0.5.1"; sha256="1xix0k62zrw6f29fb5yz97lkms669070i42nfdgz64b77axhqjcl"; depends=[dplyr ggplot2 scales]; };
   qiimer = derive2 { name="qiimer"; version="0.9.4"; sha256="0argspi9pin2gjsg0qkl28hj3bw8svfab1cy410zlq76qdnmg7df"; depends=[pheatmap]; };
   qiitr = derive2 { name="qiitr"; version="0.1.0"; sha256="1p0mcwgzvbib20l05wrnshkqx99vwr69dgy15dfwp75skyy5l797"; depends=[httr jsonlite purrr rstudioapi]; };
   qlcData = derive2 { name="qlcData"; version="0.2.1"; sha256="0n1r7462zmyzkyi7mp3hf7pn7bgw1m1zs9flm3n199kjm8f6yyzy"; depends=[ape data_tree docopt phytools shiny stringi yaml]; };
   qlcMatrix = derive2 { name="qlcMatrix"; version="0.9.7"; sha256="0iqkcvvy8rxlk0s83sjq57dd6fadb18p5z31lzy0gnzv1hsy1x8y"; depends=[docopt Matrix slam sparsesvd]; };
   qlcVisualize = derive2 { name="qlcVisualize"; version="0.1.0"; sha256="13rc4z7rz7vngrkxq09flhszvcbg6i7drdkdp8kmvgcxf0im6lv0"; depends=[alphahull fields mapdata mapplots maps maptools MASS qlcMatrix raster seriation sp spatstat]; };
-  qle = derive2 { name="qle"; version="0.17-1"; sha256="1zsvmnxdfd6avr14z5101i4kmks87yrsn15wiq5sx8gsfbxksjkj"; depends=[digest expm lhs mvtnorm nloptr]; };
+  qle = derive2 { name="qle"; version="0.18"; sha256="0b2g5sgx1p94bwc1fivbqy3avgn8f95vy1m1nzv3y67615pa251n"; depends=[digest expm lhs mvtnorm nloptr]; };
   qmap = derive2 { name="qmap"; version="1.0-4"; sha256="02xvq1mw83gln7phacbi3vhkvb100crggbldv13mhwq3wjnmg5k2"; depends=[fitdistrplus]; };
   qmethod = derive2 { name="qmethod"; version="1.5.4"; sha256="1c64b7jy9llz5dhfnk75yamjva043213gd08dsr27pyjkmbyqms1"; depends=[digest GPArotation knitr psych xtable]; };
   qmrparser = derive2 { name="qmrparser"; version="0.1.5"; sha256="0sl9n42j0dx9jqz5vv029ra6dyrg9v7mvdlya8ps3vyd6fjhwh0z"; depends=[]; };
+  qoma_smuggler = derive2 { name="qoma.smuggler"; version="0.0.1"; sha256="03p9i0kr6i3adpb9lcszcmdr9p26nfy7f8hw2sbydazglaw4hscr"; depends=[lubridate rhli tibble]; };
   qpcR = derive2 { name="qpcR"; version="1.4-1"; sha256="1r01q7jv3w59yx1gc0qw91rq7rvdhqsi8y57sqqkmwyqfw2x2vsv"; depends=[MASS Matrix minpack_lm rgl robustbase]; };
   qqman = derive2 { name="qqman"; version="0.1.4"; sha256="1v9s9ag1hfb47py87wb2nad4mbsfx35832hdmrh5kxrb2f11zl1s"; depends=[calibrate]; };
-  qqplotr = derive2 { name="qqplotr"; version="0.0.2"; sha256="1cfzs77labxsfqq3flqz40gihyaz4bsi9vhsx6qqgpl6v4iz0a2h"; depends=[dplyr ggplot2 knitr MASS robustbase]; };
+  qqplotr = derive2 { name="qqplotr"; version="0.0.3"; sha256="0qijdgma702ryi0q2ii2sa04jpz12i8c7xnh9a9zngi9n630a0f2"; depends=[dplyr ggplot2 knitr MASS purrr rmarkdown robustbase]; };
   qqtest = derive2 { name="qqtest"; version="1.1.1"; sha256="08vfpbrgvyhv1w0gqmys9zkhfxh85sk74ig5fn12ma2p87zv7r5l"; depends=[robust]; };
   qqvases = derive2 { name="qqvases"; version="1.0.0"; sha256="1fli4v1slmnwcmzmmfw84sa4mx3xzv3im1q0plb8811sbsgmwdvl"; depends=[shiny shinythemes]; };
   qrLMM = derive2 { name="qrLMM"; version="1.3"; sha256="1k85d09yvhx3pgmvqrsmhd14hqaah4pdr87vp4kg60dp9w5sydjz"; depends=[ald ghyp matrixcalc mvtnorm psych quantreg]; };
@@ -10074,14 +10508,15 @@ in with self; {
   qrcmNP = derive2 { name="qrcmNP"; version="0.1.2"; sha256="0psgnz2fdj530wjj14pv5x2889yzphnlsg10lry9i6dvmxd8m47k"; depends=[qrcm survival]; };
   qrcode = derive2 { name="qrcode"; version="0.1.1"; sha256="12j0db8vidlgkp0dcjyrw5mhhvazl7v7gpn9wsf2m0qnz1rm4igq"; depends=[R_utils stringr]; };
   qrencoder = derive2 { name="qrencoder"; version="0.1.0"; sha256="1lg60lg2fiqdw0m228i8pln2p0kqp9f21qmrx6r6rwxifvwlfhv8"; depends=[base64enc png raster Rcpp]; };
-  qrjoint = derive2 { name="qrjoint"; version="1.0-0"; sha256="18jmxb5wv16gy4vf0cgp4x885s53i3z3qmc46bdr4md513mc980w"; depends=[coda kernlab Matrix quantreg]; };
+  qrjoint = derive2 { name="qrjoint"; version="2.0-2"; sha256="1b8yxlq56z4xgy2k4da75j7gk3l1n6lcl0pzz7c9mx45296d200q"; depends=[coda kernlab Matrix quantreg]; };
   qrmdata = derive2 { name="qrmdata"; version="2016-01-03-1"; sha256="192dcsmvl3xbzlk658cfp2sk5fkgbjhjd4g1mrcs8s63hmzbwdzc"; depends=[xts]; };
   qrmix = derive2 { name="qrmix"; version="0.9.0"; sha256="1r695d9bmmngvblh9jj0rnjymdaln9w0jywz51wla0bdssssf845"; depends=[MASS quantreg]; };
   qrmtools = derive2 { name="qrmtools"; version="0.0-9"; sha256="0q6hp6j4hcj17i1c1rf180rvjcjmka0zq4r89x2rb5cwrhgps99a"; depends=[lattice Quandl quantmod rugarch xts zoo]; };
   qrng = derive2 { name="qrng"; version="0.0-5"; sha256="0ddwbbw5w7y8vns83z4dyh8inl976k2cg55rxbynaks8bdxr38mj"; depends=[]; };
   qrnn = derive2 { name="qrnn"; version="2.0.3"; sha256="0lc1gj674ll168dbcb1wh0zxmvjaqfhfxg7p2zfpakq63qns442g"; depends=[]; };
   qrsvm = derive2 { name="qrsvm"; version="0.2.1"; sha256="0qpj3c8qwrwr2asvp921av0mbdba1ayz0pdq4a52i1waqng4fgis"; depends=[doParallel foreach kernlab Matrix quadprog]; };
-  qsort = derive2 { name="qsort"; version="0.2.1"; sha256="046imyjdbsakhf6i6p63xafb9dx7fcixbdqnkm34wrzzvyjvxh15"; depends=[cowplot ggplot2 gridExtra purrr]; };
+  qsort = derive2 { name="qsort"; version="0.2.3"; sha256="1xvp29dijfa2207wyw3z09rmffn61fngfy0f00qjk284n1jnnvrg"; depends=[cowplot ggplot2 gridExtra purrr]; };
+  qsub = derive2 { name="qsub"; version="1.0.3"; sha256="1ri9bmvqakp0r26mypi8nfpf9fvxkkp3cans8ara3s7wscygycxr"; depends=[dplyr glue processx purrr random readr ssh stringr tidyr]; };
   qtbase = derive2 { name="qtbase"; version="1.0.14"; sha256="1pcgjycq61x9h52sqr6fz83qjnlpbawvpavnn9hyw2b7jlv3nwfd"; depends=[]; };
   qte = derive2 { name="qte"; version="1.2.2"; sha256="0h4kffavw2ii765c4bvwg19nlzk1si8sw09iklwmmb6gdm2v5m81"; depends=[BMisc formula_tools ggplot2 Hmisc pbapply quantreg texreg]; };
   qtl = derive2 { name="qtl"; version="1.42-8"; sha256="1l528dwvfpdlr05imrrm4rq32axp6hld9nqm6mm43kn5n7z2f5k6"; depends=[]; };
@@ -10094,6 +10529,7 @@ in with self; {
   qtlnet = derive2 { name="qtlnet"; version="1.4.4"; sha256="1r9r6wp71i36ffcdxiljvh2c8nva868x2dx6bkinbaq8cixww2cx"; depends=[graph igraph pcalg qtl sem]; };
   qtpaint = derive2 { name="qtpaint"; version="0.9.1"; sha256="08x7qcxwkaclwv1p4s9a5k95x35hzp69whiihkakjv5blm83m3g9"; depends=[qtbase]; };
   quad = derive2 { name="quad"; version="1.0"; sha256="0fak12l19f260k0ygh6zimx8dabzsv7a9i2njw8hnfcs3ndffhv5"; depends=[PearsonDS]; };
+  quadmatrix = derive2 { name="quadmatrix"; version="0.1.0"; sha256="0nngrvvbalmrr6g9bq9f5qrllvwfq5p1b9yhs4zb098s3wga8jms"; depends=[geigen matrixcalc]; };
   quadmesh = derive2 { name="quadmesh"; version="0.1.0"; sha256="1k1midhszmi843krv9sdwbyhjmffgps0xx9aigkp7yw7mpif07vx"; depends=[dplyr raster]; };
   quadprog = derive2 { name="quadprog"; version="1.5-5"; sha256="0jg3r6abmhp8r9vkbhpx9ldjfw6vyl1m4c5vwlyjhk1mi03656fr"; depends=[]; };
   quadprogXT = derive2 { name="quadprogXT"; version="0.0.3"; sha256="1pa494xpmxanbqcpylhhhm4bnsd1vkrixnmi2rg2bdw21x77hlmb"; depends=[quadprog]; };
@@ -10101,34 +10537,35 @@ in with self; {
   qualCI = derive2 { name="qualCI"; version="0.1"; sha256="09mzsy5ryyrn1gz9ahrh95cpfk7g09pmjjy0m82fh4xc7j5w6kpf"; depends=[combinat]; };
   qualV = derive2 { name="qualV"; version="0.3-3"; sha256="1yyqk223ydcc0125gsn33a4mcdp8bd76fpn8kj9bfz9g78b8dqmx"; depends=[KernSmooth]; };
   qualityTools = derive2 { name="qualityTools"; version="1.55"; sha256="1c2p78dhwqvzb2k01dvwb41a6hlr2iwpw6fv91036x30rphjzb88"; depends=[MASS Rsolnp]; };
+  qualmap = derive2 { name="qualmap"; version="0.1.1"; sha256="1z085zyqxnizpx4y1891shhijs2a9gg5ap800ryvfxncg6gk35wa"; depends=[dplyr glue leaflet purrr rlang sf]; };
   qualpalr = derive2 { name="qualpalr"; version="0.4.2"; sha256="0lgg8r7w2fwd2nw8x3k876pyc9r3igqri57akc5fwi92gb8grj5b"; depends=[assertthat randtoolbox Rcpp RcppArmadillo RcppParallel]; };
-  qualtRics = derive2 { name="qualtRics"; version="3.0"; sha256="1cd49jvk04gx278v74yc93f4jni7k30v0anz95mz98x4y3xr45nd"; depends=[assertthat dplyr httr jsonlite readr rlang sjlabelled stringr yaml]; };
   qualvar = derive2 { name="qualvar"; version="0.2.0"; sha256="1c7b7lcyq2l46sslk185r6xfh5fb35z9qihrhnh294sw1k52bffa"; depends=[]; };
   quantable = derive2 { name="quantable"; version="0.3.6"; sha256="15q4phc2j7aihl8f4qzpdwxcvshq2cfzkfcxc8k4qypsxk9a00sb"; depends=[caret dplyr e1071 ggplot2 ggrepel gplots Matrix plyr pROC RColorBrewer readr reshape2 rlang scales stringr tibble tidyr]; };
-  quanteda = derive2 { name="quanteda"; version="1.3.0"; sha256="140xs8581l29p4zn26d9ijzpzcqpgf91l279vbagbpbsj3z8zqky"; depends=[data_table extrafont fastmatch ggplot2 ggrepel lubridate magrittr Matrix network Rcpp RcppArmadillo RcppParallel RSpectra sna SnowballC spacyr stopwords stringi xml2 yaml]; };
+  quanteda = derive2 { name="quanteda"; version="1.3.4"; sha256="1m6qhkhdqrd3lvnxpy66klmi7bbkjgjfjp7y1m9cbjws27fgnspi"; depends=[data_table extrafont fastmatch ggplot2 ggrepel lubridate magrittr Matrix network Rcpp RcppArmadillo RcppParallel RSpectra sna SnowballC spacyr stopwords stringi xml2 yaml]; };
   quantification = derive2 { name="quantification"; version="0.2.0"; sha256="116cp88q9cmizxc2a8lsysa1vwyp1y86457fx5qkq5dcm4g721g8"; depends=[car]; };
   quantileDA = derive2 { name="quantileDA"; version="1.1"; sha256="0jbklxsy33j7clcw97qq4ijwkrb94v2m11gjcfa38vplfxm9913q"; depends=[]; };
+  quantities = derive2 { name="quantities"; version="0.1.1"; sha256="0yi9p0d7k07mfhvl1fhlrzslwmfcj9aaxxj97xdlwvd0kb9qs41j"; depends=[errors Rcpp units]; };
   quantmod = derive2 { name="quantmod"; version="0.4-13"; sha256="16aldg96z7amp5mr90nb8127yy04gxsihfr26km5p3cx3j117yv0"; depends=[curl TTR xts zoo]; };
   quantoptr = derive2 { name="quantoptr"; version="0.1.3"; sha256="0f9vy9yhya4wpya8n345s6n7a5sb29chdkl5fz6dwa31lp1mvvj3"; depends=[quantreg Rdpack rgenoud stringr]; };
   quantreg = derive2 { name="quantreg"; version="5.36"; sha256="023gdzahxp582rpabilpxbl3wyjrgjjnnrhcv9xhrqdfiq5l2yza"; depends=[Matrix MatrixModels SparseM]; };
   quantreg_nonpar = derive2 { name="quantreg.nonpar"; version="1.0"; sha256="1f9120awnkwsgdiqg98lg7xs5l4y80930869x6k9q76595r5m92k"; depends=[fda mnormt quantreg Rearrangement]; };
   quantregForest = derive2 { name="quantregForest"; version="1.3-7"; sha256="0lk7r02i6zpx9sdl2rp0r7fc3a84s8qhg49nh2x7k3vxwa095pjz"; depends=[randomForest RColorBrewer]; };
-  quantregGrowth = derive2 { name="quantregGrowth"; version="0.4-2"; sha256="0g8jlgxivsg788g73ji7vckc6hgncsjkpyc0l8awcpaxi7i3a98l"; depends=[quantreg]; };
+  quantregGrowth = derive2 { name="quantregGrowth"; version="0.4-3"; sha256="0q2yk51hcn7jnvh14nxa7szfj4pr9grh5rdfwazaziilbwqdmw4f"; depends=[quantreg]; };
   quantregRanger = derive2 { name="quantregRanger"; version="1.0"; sha256="1a9q2prr790bpw6s0y5ni5ppd3vqkjr0v4nqp6ywcj5n3sk69pvx"; depends=[ranger Rcpp]; };
   quantspec = derive2 { name="quantspec"; version="1.2-1"; sha256="0kvwifdwy3big0lls5h3wcb48v3jvlfp1l0zjd07jnvj43zj3ysd"; depends=[abind quantreg Rcpp snowfall zoo]; };
   quarrint = derive2 { name="quarrint"; version="1.0.0"; sha256="13fdmmrgn23xd9vpywmcl7pf729gmcxjfl1wxs30axsbp4h1s6rk"; depends=[neuralnet]; };
-  questionr = derive2 { name="questionr"; version="0.6.2"; sha256="0mjgwm6xm753r6bjlz79c9vp7xxkb69hiv3mlzrm50slh34x7jhx"; depends=[classInt highr htmltools labelled miniUI rstudioapi shiny]; };
-  queuecomputer = derive2 { name="queuecomputer"; version="0.8.2"; sha256="0zpyi4hqhsy2jlbf2ygfl25wh3m166ifp9yw4h4ycd1pga9bj43n"; depends=[dplyr Rcpp RcppArmadillo tidyr]; };
+  questionr = derive2 { name="questionr"; version="0.6.3"; sha256="1vak9wlhdgdc1vh8g87ha3gjcnx6kpl67wpsxnpvkgxai6qd8fb9"; depends=[classInt highr htmltools labelled miniUI rstudioapi shiny]; };
+  queuecomputer = derive2 { name="queuecomputer"; version="0.8.3"; sha256="0ravk2bxzq3zhk6mmh6iv11ql3bkpp2318vvrl39ghm5bh6pp6mg"; depends=[dplyr Rcpp RcppArmadillo tidyr]; };
   queueing = derive2 { name="queueing"; version="0.2.11"; sha256="1rgavpivvxwww1qiphbjm25d1avhjcjv31imsrzrkwh1d12b2k7x"; depends=[]; };
   quhomology = derive2 { name="quhomology"; version="1.1.1"; sha256="0wiih00zk4682wy1r4nyifh76h5bnvl3f785wjzmrwylnfy951l3"; depends=[MASS numbers]; };
-  quickPlot = derive2 { name="quickPlot"; version="0.1.4"; sha256="13g86gdfidkvp70w4gscp81c4vzbhbl7b47a7knw4h7hswsb9a1p"; depends=[data_table fpCompare ggplot2 gridBase igraph raster RColorBrewer rgdal rgeos sp]; };
+  quickPlot = derive2 { name="quickPlot"; version="0.1.5"; sha256="0jqfshwb7ykrz5xi0gfp80fs81yv6mfc0vhbgkbzn7kcjfkcydac"; depends=[data_table fpCompare ggplot2 gridBase igraph raster RColorBrewer rgdal rgeos sp]; };
   quickReg = derive2 { name="quickReg"; version="1.5.0"; sha256="1l1v3k8albxlaz18l2b2x2ryifq4pbdq6n4q7555hnfcik9rqmw5"; depends=[dplyr ggplot2 nortest psych rlang survival]; };
-  quickblock = derive2 { name="quickblock"; version="0.1.0"; sha256="15zv7znhq3rl5jkdy0jyxr0h2mkpxir04vvl2hw57c5mn79izcpr"; depends=[distances scclust]; };
+  quickblock = derive2 { name="quickblock"; version="0.2.0"; sha256="0ij4ivpnkjzdixbq7pg4g1xkb031qawadr22qhzp0q210qhmhc0m"; depends=[distances scclust]; };
   quickmapr = derive2 { name="quickmapr"; version="0.3.0"; sha256="0962qm8ak0wpqld8nrb8rvvb78743zfrfsq2xrwdlql681j2nv8c"; depends=[httr raster rgdal rgeos sf sp]; };
-  quickmatch = derive2 { name="quickmatch"; version="0.1.2"; sha256="03wnx6hifr4pmwm6fsxamcaf5ig59nfia9lyn6mzxplinfid71w6"; depends=[distances sandwich scclust]; };
+  quickmatch = derive2 { name="quickmatch"; version="0.2.1"; sha256="1qfslhjlbjpzigz8n6b7w41g8pwdiwri091ivd5igp1xy5pv8a3w"; depends=[distances sandwich scclust]; };
   quickpsy = derive2 { name="quickpsy"; version="0.1.5"; sha256="0r1xjcx02p0fsgfcd2h0dxcagzxxan405cjwh8sjdgi5p01jrym8"; depends=[DEoptim dplyr ggplot2 MPDiR]; };
   quickregression = derive2 { name="quickregression"; version="0.2"; sha256="1z0sspi8q7dvgxqbj5na56v458pv6jhxrssnm6j23156dchgw39h"; depends=[car]; };
-  quint = derive2 { name="quint"; version="1.2.1"; sha256="1d9dnrjnl9cg2yn5snr6x9qr6lf74639j3ymsxpw0wn5c4fm8z46"; depends=[Formula partykit rpart]; };
+  quint = derive2 { name="quint"; version="2.0.0"; sha256="10jcpabsk7bdw7cvq21z0hsrp4gnlbf35iypc2gprrbkk8sw4i8i"; depends=[Formula partykit rpart]; };
   quokar = derive2 { name="quokar"; version="0.1.0"; sha256="1qnl3x1aa665xpyb3ac07xrnnjdwbmj645p103144k5is5b8likc"; depends=[ald ALDqr bayesQR dplyr ggplot2 GIGrvg gridExtra knitr magrittr MCMCpack purrr quantreg robustbase tidyr]; };
   quotedargs = derive2 { name="quotedargs"; version="0.1.2"; sha256="034fhfmfq62yf7akx2i0bim70jq9azkk2h28k79lwax7ysydsjnj"; depends=[]; };
   qut = derive2 { name="qut"; version="2.1"; sha256="1wkk4c4f10a1whrspr5yalp7flcxckzxlx187ymmpnz7qcncz619"; depends=[flare glmnet lars Matrix]; };
@@ -10140,7 +10577,9 @@ in with self; {
   r2dRue = derive2 { name="r2dRue"; version="1.0.4"; sha256="1apdq7zj5fhs349wm9g6y06nn33x24pg3gdp4z1frd18qlacf8z5"; depends=[matrixStats rgdal sp]; };
   r2glmm = derive2 { name="r2glmm"; version="0.1.2"; sha256="0iim92blpa59vgz97c2pi05yhbjjmaffdbkbmk5kplfb2vmazgiy"; depends=[afex data_table dplyr ggplot2 gridExtra lmerTest MASS Matrix mgcv pbkrtest]; };
   r2stl = derive2 { name="r2stl"; version="1.0.0"; sha256="18lvnxr40cm450s8qh09c3cnkl1hg83jhmv1gzsv6nkjrq4mj5wh"; depends=[]; };
+  r4lineups = derive2 { name="r4lineups"; version="0.1.1"; sha256="1p0dnrp21zx1l9lqx01jnq54d5ppb8siibv47i4gsp7c7db9ymxc"; depends=[boot dplyr ggplot2 ggrepel here magick magrittr pROC psych purrr]; };
   r4ss = derive2 { name="r4ss"; version="1.24.0"; sha256="1kifzfg2zx6lq2c8qqbhb096z1wgdayhg5qzx5hnkwpn05w5cma3"; depends=[coda corpcor gplots gtools maps pso truncnorm]; };
+  r511 = derive2 { name="r511"; version="0.1.1"; sha256="1njsnjf0746cv6x7fznq4cg556fczqcfawwb869r3w9zv0zj1iy9"; depends=[assertthat dplyr httr tibble xml2]; };
   r6extended = derive2 { name="r6extended"; version="0.1.1"; sha256="184c3jh84vihbwg81c2wv3ndaddki8cpas3wgvqk2akyq168rnfc"; depends=[digest hellno magrittr R6]; };
   rARPACK = derive2 { name="rARPACK"; version="0.11-0"; sha256="12h2y46xcfldhjdmm960swgn9b23zvkj5vg2bi42s9qxwgi02d63"; depends=[RSpectra]; };
   rAltmetric = derive2 { name="rAltmetric"; version="0.7.0"; sha256="1vbvjv273vg3pi30vxxa2bivlajfsbqrzflk3payp6ym9myi27mg"; depends=[httr jsonlite rlist]; };
@@ -10166,12 +10605,13 @@ in with self; {
   rFDSN = derive2 { name="rFDSN"; version="0.0.0"; sha256="1ffiqpdzy4ipy2aci22zkih4373ifkjkpvsrza8awhyf9fwqwdsl"; depends=[XML]; };
   rFSA = derive2 { name="rFSA"; version="0.9.1"; sha256="14qpxmzy4vy1fydn8yqh1001mqrgv1i67ai42w61dkk0d4m75z60"; depends=[hashmap tibble]; };
   rFTRLProximal = derive2 { name="rFTRLProximal"; version="1.0.0"; sha256="1458gqy2zbaa62vaimawdr1nk0lsgwz1j4pgw21fkw7bskcszz0f"; depends=[data_table FeatureHashing foreach magrittr Matrix Rcpp RcppArmadillo RcppProgress]; };
-  rFerns = derive2 { name="rFerns"; version="2.0.3"; sha256="02lq43mgcz8n21hwb0pjqi0aq5dacnaakpx336q1xzw1kwlvfkhv"; depends=[]; };
+  rFerns = derive2 { name="rFerns"; version="3.0.0"; sha256="0z12201y1b9d3rd02k4y64hpnlrgkg7pi1jpzsh1br4pchdf7rrm"; depends=[]; };
   rGammaGamma = derive2 { name="rGammaGamma"; version="1.0.12"; sha256="1051ah6q11qkxj1my4xybbzc8xcqkxfmps8mv2his5cyfllwidbs"; depends=[gsl]; };
   rGoodData = derive2 { name="rGoodData"; version="0.1.1"; sha256="092sgy6y3dkyr32hrir4jvjwh7n6gfvv9z7i631fipg59255g0zy"; depends=[data_table httr jsonlite]; };
   rGroovy = derive2 { name="rGroovy"; version="1.3"; sha256="172vm4diygzi4ipmw8bl03k0x3aps0h1vkvwvw539kamy7xb5w98"; depends=[rJava]; };
   rHealthDataGov = derive2 { name="rHealthDataGov"; version="1.0.1"; sha256="0lkjprss15yl6n9wgh79r4clip3jndly2ab1lv4iijzxnxay099d"; depends=[bit64 httr jsonlite]; };
   rHpcc = derive2 { name="rHpcc"; version="1.0"; sha256="0096z90mmf1j2xpb9034a5ph52m8z6n6xjh3km2vrhw63g3cpwap"; depends=[RCurl XML]; };
+  rIP = derive2 { name="rIP"; version="0.1.1"; sha256="0fmn48zfp7pkjza6a4dl7hpm2addijxk9990fw845q0awdd181ax"; depends=[httr]; };
   rIsing = derive2 { name="rIsing"; version="0.1.0"; sha256="1208lwfk9j8gghj8xf6i8v6s18h89ydqsd4jq3r88n403yzbzzck"; depends=[data_table Rcpp RcppEigen]; };
   rJPSGCS = derive2 { name="rJPSGCS"; version="0.2-10"; sha256="0a00s10yp22fkvk67dkq43sbphcqla65x9j4qpv076bmdchn7arw"; depends=[chopsticks rJava]; };
   rJava = derive2 { name="rJava"; version="0.9-10"; sha256="0y7yg70i3zwbwl4g36js4dqpl51cmwss5ymrsk24d1z07bflp4y9"; depends=[]; };
@@ -10180,17 +10620,18 @@ in with self; {
   rLDCP = derive2 { name="rLDCP"; version="1.0.2"; sha256="0k7zc1xyqmcl7070hhpqw1d2k1ij6bd4wjym8cw263pds2n7nx21"; depends=[XML]; };
   rLTP = derive2 { name="rLTP"; version="0.1.4"; sha256="04w432m03xwh0szshsrfw5h7wy43q4lj8z0y07k8w6gsf27cy5bx"; depends=[RCurl]; };
   rLakeAnalyzer = derive2 { name="rLakeAnalyzer"; version="1.11.4"; sha256="1fvln3r2zkzhsck53jppchg795qbjbzw0rd688h89if1lkiy51w6"; depends=[plyr]; };
+  rLandsat = derive2 { name="rLandsat"; version="0.1.0"; sha256="0j6p0ba76vhzg69frdf4ykiyc8vy0axd4jw26b72j8pl9rdwnn01"; depends=[dplyr httr jsonlite RCurl readr stringr svMisc]; };
   rLiDAR = derive2 { name="rLiDAR"; version="0.1.1"; sha256="1w0yi4ygw0l9ydbllqjylp30d401bsf7b6fng6qg3pssbi9v3kln"; depends=[bitops deldir geometry plyr raster rgl sp spatstat]; };
   rLindo = derive2 { name="rLindo"; version="8.0.1"; sha256="05qyc4wvpjgw8jxmwn2nwybi695fjn0cdilkprwmjg07c82f0q5n"; depends=[]; };
   rMEA = derive2 { name="rMEA"; version="1.0.0"; sha256="1cxcf2ji2f3kkjlj6lym7zfpmgbbjw7al67dldy2kn9dk2dn087z"; depends=[]; };
   rMR = derive2 { name="rMR"; version="1.1.0"; sha256="0da1hclfnnlkp9by6zf2p079643p8nimplr9p3ipbjdy739j344z"; depends=[biglm]; };
   rMouse = derive2 { name="rMouse"; version="0.1"; sha256="0pzxasap5kwxqq36mb4zi139jllsl4vk06dw2pv9xnwdxiszr3gp"; depends=[rJava]; };
   rNMF = derive2 { name="rNMF"; version="0.5.0"; sha256="1nz6h0j5ywdh48m0swmhp34hbkycd7n13rclrxaw85qi9wc42597"; depends=[knitr nnls]; };
-  rNOMADS = derive2 { name="rNOMADS"; version="2.3.9"; sha256="15l6150vsaa7y2wv896mhdbakxdsg87fx74bbj0rsn0757jss525"; depends=[fields GEOmap MBA RCurl rvest scrapeR stringr XML xml2]; };
+  rNOMADS = derive2 { name="rNOMADS"; version="2.3.10"; sha256="1pbbrx91fq5gpjhf6rqyhl9isj3mz3prbh5g5sfg7y63hhn817z0"; depends=[fields GEOmap MBA RCurl rvest scrapeR stringr uuid XML xml2]; };
   rODE = derive2 { name="rODE"; version="0.99.6"; sha256="0l518ghfw6283kckqcbh45a35vd73njy05v3dwghhhjdj7v3km8b"; depends=[data_table]; };
   rPackedBar = derive2 { name="rPackedBar"; version="0.1.0"; sha256="12jwkch3264m6ksl8rdjirwdzm1g8b4050mm6rysw9v57k3v57ji"; depends=[data_table plotly scales]; };
   rPowerSampleSize = derive2 { name="rPowerSampleSize"; version="1.0.2"; sha256="1insdfvcn1pirsnf7nwfia0kzgsmh2zpghgfj2yc35ld1r9j2hp2"; depends=[mvtnorm ssanv]; };
-  rPraat = derive2 { name="rPraat"; version="1.0.8"; sha256="06f97sa43i0b4x8j48higgx5jyj5q73j6mf2730yfm4db6ahz94m"; depends=[dplyr dygraphs readr stringr]; };
+  rPraat = derive2 { name="rPraat"; version="1.1.2"; sha256="1fvawmpv3zxd1gjcal69j5biga1mcd956kr52x0azqprhqdk6r52"; depends=[dplyr dygraphs readr stringr]; };
   rPref = derive2 { name="rPref"; version="1.2"; sha256="19b6rycz73rz3nxymb52gfddqsxprkxazwa8pb75vckk13q1cmj0"; depends=[dplyr igraph lazyeval Rcpp RcppParallel]; };
   rPython = derive2 { name="rPython"; version="0.0-6"; sha256="1aw9jn45mw891cskr51yil60i55xv5x6akjvfdsbb9nwgdwwrqdp"; depends=[RJSONIO]; };
   rRAP = derive2 { name="rRAP"; version="1.1"; sha256="1nzvs8bjkbjraa33azxf9mrxsxh87qhh3qlldrcs5y4fq4ancyqb"; depends=[lars lassoshooting MASS]; };
@@ -10201,30 +10642,34 @@ in with self; {
   rSymPy = derive2 { name="rSymPy"; version="0.2-1.1"; sha256="1mrfpyalrq8b6yicy28jsj0xy7hlawa72imsfhabwd3hrx6ld150"; depends=[rJython]; };
   rTableICC = derive2 { name="rTableICC"; version="1.0.7"; sha256="1z896675kmm9p5dnmcnsz2205ynf05laqcxvlc9y0g5i0x8rf8v6"; depends=[aster partitions]; };
   rTensor = derive2 { name="rTensor"; version="1.3"; sha256="0ra34sn4g92r6asrn4la2wbsi2y0hnyx163wwi4v0j6f57bslhdw"; depends=[]; };
+  rTephra = derive2 { name="rTephra"; version="0.1"; sha256="045f2sp2j4hiwa9k1vs6cxr59x1yr34jq1z2crasxflsxbwa3xz8"; depends=[]; };
   rUnemploymentData = derive2 { name="rUnemploymentData"; version="1.1.0"; sha256="0p5hba8iv060szp23s05hvpmwan518ykakm6vqzdcki0inxw0hyv"; depends=[choroplethr rvest stringr]; };
   rWBclimate = derive2 { name="rWBclimate"; version="0.1.3"; sha256="0vs56hx7a85pw4jx8nb8bdlr9dbkl4zdhzhqsm0505xc3qz18vxh"; depends=[ggplot2 httr jsonlite plyr reshape2 rgdal sp]; };
-  rWind = derive2 { name="rWind"; version="1.0.2"; sha256="0w109l3hibl1w0g2qj2rqm59qfs9zbry5q8azii86mqpgwxk7zln"; depends=[gdistance lubridate Matrix raster]; };
-  rWishart = derive2 { name="rWishart"; version="0.1.0"; sha256="1kg2n8lyfdp76fw36m13rlb0qy1ffk8n701ffmf5dgkfp0x8nnn7"; depends=[lazyeval MASS Matrix]; };
+  rWind = derive2 { name="rWind"; version="1.0.3"; sha256="04b3yz0x07j2fvq0gzmvl071wwnkhzx4wfr7xpdss2nq8vjwxjaj"; depends=[gdistance lubridate Matrix raster]; };
+  rWishart = derive2 { name="rWishart"; version="0.1.1"; sha256="1zv35l2nvwwidx5zxfh7a4jgiaq2mqk69xf974994k1ksfvibkmi"; depends=[lazyeval MASS Matrix]; };
   rYoutheria = derive2 { name="rYoutheria"; version="1.0.3"; sha256="1r63ggy4knwzxnpjkmsn7zwmwfaznm8mmxl7r9ph10wz4sblgygl"; depends=[plyr RCurl reshape2 RJSONIO]; };
   rabi = derive2 { name="rabi"; version="0.1.0"; sha256="02ldpkqpdvh0b660j34bppw5j9pl3a2b4vkzaaiq4kcangahg2r6"; depends=[numbers polynom stringdist]; };
   race = derive2 { name="race"; version="0.1.59"; sha256="13jprlnngribgvyr7fbg9d36i8qf3cax85n71dl71iv0y24al1cy"; depends=[]; };
   radar = derive2 { name="radar"; version="1.0.0"; sha256="1wh5j3cfbj01jx2kbm9ca5cqhbb0vw7ifjn426bllm4lbbd8l273"; depends=[]; };
   radarchart = derive2 { name="radarchart"; version="0.3.1"; sha256="0gcxnbgj8ja1m4wzhbjy67m6zphf0c5ni9yx7sr7f0abm03ry753"; depends=[htmltools htmlwidgets]; };
-  radiant = derive2 { name="radiant"; version="0.9.5"; sha256="0a5dvmvnvn2jd53grvagbxw6lb4mp3l809911dlh2rr4b9z9nkyx"; depends=[AlgDesign psych r_import radiant_basics radiant_data radiant_design radiant_model radiant_multivariate rstudioapi shiny]; };
-  radiant_basics = derive2 { name="radiant.basics"; version="0.9.5"; sha256="0xwsgi4nr9i7wi699cgmfdyb7nxf98af4vgl56i1bbnxl8k0bnxz"; depends=[dplyr ggplot2 gridExtra magrittr psych r_import radiant_data rstudioapi scales shiny tidyr]; };
-  radiant_data = derive2 { name="radiant.data"; version="0.9.5"; sha256="0mbxfqn79nphii4hb6kxl2wc0w0ra16y378rp2yw9a9926zdb7mb"; depends=[base64enc broom car curl dplyr DT ggplot2 glue gridExtra jsonlite knitr lubridate magrittr markdown plotly psych r_import readr readxl rlang rmarkdown rstudioapi scales shiny shinyAce tibble tidyr writexl]; };
-  radiant_design = derive2 { name="radiant.design"; version="0.9.5"; sha256="1lqim49ifw019aqfrz2pqa81yn2kg5hixn3ywd5hfj670n5sd5hr"; depends=[AlgDesign dplyr mvtnorm polycor r_import radiant_data rstudioapi shiny]; };
-  radiant_model = derive2 { name="radiant.model"; version="0.9.5"; sha256="1r1gz8hlrihadzz4x73ccrxqkz744lbr8h29fa77ghkiy9y55abq"; depends=[car data_tree DiagrammeR dplyr e1071 ggplot2 gridExtra lubridate magrittr NeuralNetTools nnet psych r_import radiant_basics radiant_data rlang rpart rstudioapi sandwich shiny stringr tidyr yaml]; };
-  radiant_multivariate = derive2 { name="radiant.multivariate"; version="0.9.5"; sha256="1rpk757r80l38y0y4w94h363xdmrv7mp6qpnwpcbrza20w9dhqvs"; depends=[car dplyr ggplot2 ggrepel Gmedian GPArotation gridExtra magrittr MASS psych r_import radiant_data radiant_model rlang rstudioapi scales shiny]; };
+  radiant = derive2 { name="radiant"; version="0.9.7"; sha256="0vmiypmabimnxdh692x4f2fbv32fmb8rhn5hvf60sk5qzzp0hla3"; depends=[r_import radiant_basics radiant_data radiant_design radiant_model radiant_multivariate shiny]; };
+  radiant_basics = derive2 { name="radiant.basics"; version="0.9.7"; sha256="1lyishpzy51yyi5wqcxxyl1vz16i28fkkg9828f5z6ak109y2mn8"; depends=[dplyr ggplot2 gridExtra magrittr psych r_import radiant_data scales shiny tidyr]; };
+  radiant_data = derive2 { name="radiant.data"; version="0.9.7"; sha256="1f98ahki0kyb27gl55a859zb0lsvk9gddd9f54y767xfs6h89cgk"; depends=[base64enc broom car curl dplyr DT ggplot2 glue gridExtra jsonlite knitr lubridate magrittr markdown plotly psych r_import readr readxl rlang rmarkdown rstudioapi scales shiny shinyAce shinyFiles summarytools tibble tidyr writexl]; };
+  radiant_design = derive2 { name="radiant.design"; version="0.9.7"; sha256="1qfridr70s22agjaiv2522v24pnf4jrk4dad46ghdzzj79s3kqvj"; depends=[AlgDesign dplyr mvtnorm polycor r_import radiant_data shiny]; };
+  radiant_model = derive2 { name="radiant.model"; version="0.9.7"; sha256="18xrvgc3f58m26vng4m9ayn49vf7yb3r1p3nwbhszih5m9sfgxx2"; depends=[car data_tree DiagrammeR dplyr e1071 ggplot2 gridExtra lubridate magrittr NeuralNetTools nnet psych r_import radiant_basics radiant_data rlang rpart sandwich shiny stringr tidyr yaml]; };
+  radiant_multivariate = derive2 { name="radiant.multivariate"; version="0.9.7"; sha256="1p7857h0p8l828hngb0l4qswjifdisi9ya0yxmn9wry50ids9rgf"; depends=[car dplyr ggplot2 ggrepel Gmedian GPArotation gridExtra magrittr MASS psych r_import radiant_data radiant_model rlang scales shiny]; };
   radiomics = derive2 { name="radiomics"; version="0.1.3"; sha256="1ra94yaqw88slznhyv70kbfricxi44m4pnx1zh4ijghm491rphr5"; depends=[Rcpp reshape2 spatstat]; };
   radir = derive2 { name="radir"; version="1.0.3"; sha256="0v1w0jy19fqscwkggyjashb6n9r6xjc0d971zw0lqnh1ap3chg0y"; depends=[hermite]; };
+  radix = derive2 { name="radix"; version="0.5"; sha256="18sjhkrqsdr03sjpdh0crd83r8rk8q3p2saabasbkkbvprh6b769"; depends=[base64enc digest downloader htmltools jsonlite knitr lubridate mime png progress rmarkdown rprojroot rstudioapi stringr whisker xml2 yaml]; };
+  radjust = derive2 { name="radjust"; version="0.1.0"; sha256="0krryhqid16a6jfb007n0k6rc8r7c808h859a9pjid2jbkg0bm7l"; depends=[]; };
   radmixture = derive2 { name="radmixture"; version="0.0.1"; sha256="0rs60xjd43lg5c9972qhpg6bsqfg2578qvrz7gz3bdip10jb1ryj"; depends=[magrittr MCMCpack plyr quadprog]; };
+  radtools = derive2 { name="radtools"; version="1.0.0"; sha256="0xspd3spfr59nciddx4gmfrw52jr0m0gznqb5rjsarshn9y8x3xf"; depends=[dplyr Hmisc magrittr oro_dicom oro_nifti]; };
   rafalib = derive2 { name="rafalib"; version="1.0.0"; sha256="1dmxjl66bfdgrybhwyaa8d4i460liqcdw8b29a6w7shgksh29m0k"; depends=[RColorBrewer]; };
   rags2ridges = derive2 { name="rags2ridges"; version="2.2"; sha256="04f9gvwpgrx54dgbjjixlxa2056aqcz2kryn4jplwf5fc0vj1lyn"; depends=[expm fdrtool ggplot2 graph gRbase Hmisc igraph RBGL Rcpp RcppArmadillo reshape sfsmisc snowfall]; };
   ragt2ridges = derive2 { name="ragt2ridges"; version="0.3.1"; sha256="0zjqrvy1k1lz4caakcj3c6l2j637wp6nxbzfj0gvcn2c4pjcrdyp"; depends=[abind expm fdrtool igraph MASS Matrix mvtnorm rags2ridges Rcpp RcppArmadillo]; };
   ragtop = derive2 { name="ragtop"; version="0.5"; sha256="0h09h9ws9c2d9xc00w4hl000h0kbvq16lz4vgv1w93am8zmsp4wm"; depends=[futile_logger limSolve]; };
   railtrails = derive2 { name="railtrails"; version="0.1.1"; sha256="1hi55rcxmr7k3na3rpjqmd5fpgn51bymrp7yxmw45ff7mlzpa5h6"; depends=[tibble]; };
-  rainbow = derive2 { name="rainbow"; version="3.4"; sha256="09vxdb4j099grnlx10995b74r3h9g1vs8div3nywgnslaj8x7pay"; depends=[cluster colorspace hdrcde ks MASS pcaPP]; };
+  rainbow = derive2 { name="rainbow"; version="3.5"; sha256="1gcaflb3haw9wpx4wl64vgi30jxn2nrzlm5125hhg647rw7ryp8k"; depends=[cluster colorspace hdrcde ks MASS pcaPP]; };
   raincpc = derive2 { name="raincpc"; version="0.4"; sha256="0yzpyidvf24frf82pj7rarjh0ncm5dhm0mmpsf2ycqlvp0qld10i"; depends=[SDMTools]; };
   rainfreq = derive2 { name="rainfreq"; version="0.3"; sha256="0985ck2bglg22gfj7m0hc7kpk0apljsbssf1ci99mgk47yi8fk9v"; depends=[RCurl SDMTools]; };
   rakeR = derive2 { name="rakeR"; version="0.2.1"; sha256="0cd89q6k0y9z1qk9k06iw56lhj4c52ckr0g4qv6q95lkyrbi3qg8"; depends=[ipfp wrswoR]; };
@@ -10241,7 +10686,7 @@ in with self; {
   random_polychor_pa = derive2 { name="random.polychor.pa"; version="1.1.4-2"; sha256="1ybwfn3hdwisxjn85vqrib1zhk8dcddbarbwjdf1vn27ih3c4h2c"; depends=[boot MASS mvtnorm nFactors psych sfsmisc]; };
   randomForest = derive2 { name="randomForest"; version="4.6-14"; sha256="0kbmm0l42fc2d1rdq0l7k09d34kd87q4lx651ffsic4y84h8kf7l"; depends=[]; };
   randomForestExplainer = derive2 { name="randomForestExplainer"; version="0.9"; sha256="0gqqm3784krl6xdx7j6xvvyi2rjbyi6c8shm44yvq59is5i7fypc"; depends=[data_table dplyr DT dtplyr GGally ggplot2 ggrepel MASS randomForest reshape2 rmarkdown]; };
-  randomForestSRC = derive2 { name="randomForestSRC"; version="2.6.1"; sha256="0wmqy1m04iknqzfajhfcb6cjpl9h35x13ihsdx91l1d1yki7yq71"; depends=[]; };
+  randomForestSRC = derive2 { name="randomForestSRC"; version="2.7.0"; sha256="12wqjch4mddb9gqcacihcvlrdj697yr2sjr3pmrf7xm3yws2gjrb"; depends=[]; };
   randomGLM = derive2 { name="randomGLM"; version="1.02-1"; sha256="031338zxy6vqak8ibl2as0l37pa6qndln0g3i9gi4s6cvbdw3xrv"; depends=[doParallel foreach MASS]; };
   randomLCA = derive2 { name="randomLCA"; version="1.0-15"; sha256="10rx2ah50dcjxz5y492c59d3pn0dvlgjaxfdf8sknkf6s4pmwkis"; depends=[boot fastGHQuad lattice Matrix]; };
   randomNames = derive2 { name="randomNames"; version="1.0-0.0"; sha256="12q5bs65qivddiaxbsp128j94h2vyrgjvmm80d52r36ffbaigl09"; depends=[data_table]; };
@@ -10250,7 +10695,7 @@ in with self; {
   randomizationInference = derive2 { name="randomizationInference"; version="1.0.3"; sha256="0x36r9bjmpx90fz47cha4hbas4b31mpnbd8ziw2wld4580jkd6mk"; depends=[matrixStats permute]; };
   randomizeBE = derive2 { name="randomizeBE"; version="0.3-4"; sha256="1x1lh1rrw7ma2wls0dflz18lk9h0qdy9gb11af95hqpabqc85rd7"; depends=[]; };
   randomizeR = derive2 { name="randomizeR"; version="1.4.2"; sha256="0jv0mc40cy4w17jrsb2023l7k7cnzl9czdigl4shq9nx67mccdwx"; depends=[ggplot2 plotrix]; };
-  randomizr = derive2 { name="randomizr"; version="0.16.0"; sha256="0lsba2nzzx8vnkyj8fzf9lfnkq743qdzir9f15pk23xycjzlncfs"; depends=[]; };
+  randomizr = derive2 { name="randomizr"; version="0.16.1"; sha256="1jj04wvn7qrqpvag4ri9fqkw9815kyxhlcqn2f1m0bb94d5ngwzq"; depends=[]; };
   randomsearch = derive2 { name="randomsearch"; version="0.1.0"; sha256="176grqp6rv4hiyzr9fzx2zz360h5nkrw39gidclgmrp7ckn5qs4v"; depends=[checkmate fs parallelMap ParamHelpers smoof]; };
   randquotes = derive2 { name="randquotes"; version="0.1.0"; sha256="1rpcmxkpq8lgfzrjaipf5x573gm6rc31c9fafghiy99c0iphf46w"; depends=[curl jsonlite xml2]; };
   randstr = derive2 { name="randstr"; version="0.2.0"; sha256="17593lbk6r089yasafd21i3v90ya9n92rflpzl0qicd2kqqk2gdh"; depends=[random stringi truncnorm]; };
@@ -10258,59 +10703,64 @@ in with self; {
   randtoolbox = derive2 { name="randtoolbox"; version="1.17.1"; sha256="13akf13qi4yhj9gapym05074b1qzk03vgysy81qsd73pd8r107ls"; depends=[rngWELL]; };
   rangeBuilder = derive2 { name="rangeBuilder"; version="1.4"; sha256="1jjy1d3kljysm3mqgdszdi6incbmg2di63akxswfaiqcp1m68a6y"; depends=[alphahull cleangeo pbapply raster Rcpp rgdal rgeos sp stringi]; };
   rangeMapper = derive2 { name="rangeMapper"; version="0.3-4"; sha256="0qrcxbh8saflqjmaa18fcyk5cqk6h4rz92zhqckswyqynx6m0cps"; depends=[classInt data_table foreach ggplot2 gridExtra lattice magrittr maptools raster RColorBrewer rgdal rgeos RSQLite sp]; };
+  rangeModelMetadata = derive2 { name="rangeModelMetadata"; version="0.1.0"; sha256="0v0hn46s99hidfp0ln28hffyk3mzydxvqslkyif32zcdj0fxmc7l"; depends=[biomod2 dismo dplyr ecospat ENMeval googlesheets jsonlite MASS raster rgdal rgeos shiny sp spatstat spocc]; };
+  rangemodelR = derive2 { name="rangemodelR"; version="1.0.3"; sha256="16pzmiazmfw14xvrlg0k9j15zrmz034hya41zl5z411d8rn0mqva"; depends=[]; };
   ranger = derive2 { name="ranger"; version="0.10.1"; sha256="12z67xkgdmr5cflpd6cln0mn5xxajanqbfwlckv6cfma0gvf2z1j"; depends=[Matrix Rcpp RcppEigen]; };
   rankFD = derive2 { name="rankFD"; version="0.0.1"; sha256="1zb9gxvsmv46mpw5znskhfjxnwkr59hdixcly6i3r78yaqgca0dz"; depends=[coin lattice MASS Matrix]; };
   rankdist = derive2 { name="rankdist"; version="1.1.3"; sha256="1hdafy2zzn7hwl1lx5jksgi974zjn49dwih5s2zdyv4nnmmai003"; depends=[hash optimx permute Rcpp]; };
   rankhazard = derive2 { name="rankhazard"; version="1.1.0"; sha256="0kljn9b74alrd22b5pwfnamdbaqi2wa2z6yzpmgpfs3x0hv72fw7"; depends=[survival]; };
   rapiclient = derive2 { name="rapiclient"; version="0.1.2"; sha256="072rlr7z9rj4agkzmy12cz4axh4pajavfd83lpcx2b1lgxpj6ck4"; depends=[httr jsonlite]; };
-  rapidjsonr = derive2 { name="rapidjsonr"; version="1.0.0"; sha256="064xqvyv83vl188rk18kgi4iaqq299d2y6fr24dk9lndpc4509kc"; depends=[]; };
+  rapidjsonr = derive2 { name="rapidjsonr"; version="1.1"; sha256="0h4phjjhykbb45rg5b1xn48vqxdcvcngbm0416ds8in7j469wbwd"; depends=[]; };
   rapidraker = derive2 { name="rapidraker"; version="0.1.0"; sha256="17jzkzm5hvd8vcqql40bwl89sfgz8yicvi0753nzgkmbvanzjhjx"; depends=[openNLPdata rJava slowraker]; };
   rappdirs = derive2 { name="rappdirs"; version="0.3.1"; sha256="0ji6sg3bdn5gazkq14xmmcq7jnbsyxw4lzmmbgv6526j2vn93n1g"; depends=[]; };
   rapport = derive2 { name="rapport"; version="1.0"; sha256="1i1zawar5yxw23km74mrvaxnc9hr06kqjvbm046c09cqi6pw0hjh"; depends=[pander rapportools stringr yaml]; };
   rapportools = derive2 { name="rapportools"; version="1.0"; sha256="1sgv4sc737i12arh5dc3263kjsz3dzg06qihfmrqyax94mv2d01b"; depends=[pander plyr reshape]; };
   raptr = derive2 { name="raptr"; version="0.1.2"; sha256="17aba9jxlvvf2946wy2y0ck5j85sqzkr8q1yk68cdqkf45lxkvz8"; depends=[adehabitatHR assertthat BH boot doParallel gdalUtils ggplot2 hypervolume ks Matrix mvtnorm PBSmapping plyr RandomFields raster RColorBrewer Rcpp RcppEigen rgdal rgeos RgoogleMaps scales shape sp]; };
+  rare = derive2 { name="rare"; version="0.1.1"; sha256="0j78ilswiaxdp9107psiw8ibxncd7i81z2njhfqf0n7532pbvjss"; depends=[glmnet Matrix Rcpp RcppArmadillo]; };
   rareGE = derive2 { name="rareGE"; version="0.1"; sha256="0v3a2wns77q923ilddicqzg0108f8kmfdnsff1n65icin7cfzsny"; depends=[MASS nlme survey]; };
   rareNMtests = derive2 { name="rareNMtests"; version="1.1"; sha256="13r2hipqsf8z9k48ha5bh53n3plw1whb7crpy8zqqkcac8444b2z"; depends=[vegan]; };
   rarhsmm = derive2 { name="rarhsmm"; version="1.0.7"; sha256="0pvqa6f0ib1jb0rwc6wv6hfinncb21v2g0y0hsy5l33gdagjw2sz"; depends=[glmnet Rcpp RcppArmadillo]; };
   rasclass = derive2 { name="rasclass"; version="0.2.2"; sha256="1lsmv8kh519mz3szb4k9s17fz1480cw0i4qk12givhhm2rpzjy50"; depends=[car e1071 nnet randomForest RSNNS]; };
   rase = derive2 { name="rase"; version="0.3-3"; sha256="03jqf5y5vj354m9psp81wzw6d7dfqr76bfjqv9kannsakkj587sy"; depends=[ape mvtnorm polyCub rgl sm spatstat]; };
-  raster = derive2 { name="raster"; version="2.6-7"; sha256="009bwil3n9gaf11wzifwxyw9j6pl0pyjk3l5v7csd935si7q14gv"; depends=[Rcpp sp]; };
+  raster = derive2 { name="raster"; version="2.7-15"; sha256="1b0js80bypy2nh91y12pfxqwldwq8y09dhkrjqkgj9n89k5fj55s"; depends=[Rcpp sp]; };
   rasterImage = derive2 { name="rasterImage"; version="0.3.0"; sha256="0csx7wqwxdsddypd1c9wv74gcyymasn9n6pn05a35j6xhqbk2zp3"; depends=[plotrix]; };
   rasterKernelEstimates = derive2 { name="rasterKernelEstimates"; version="1.0.1"; sha256="1733ic1hxym3gyibk2ysy5zzq7s9rbf6jx63x7irnrcavq151f8s"; depends=[raster]; };
   rasterList = derive2 { name="rasterList"; version="0.5.8"; sha256="0q7apglxzpah04463z07cpkzyd6l6dbbdhm601brzh6yk75z20vh"; depends=[raster]; };
   rasterVis = derive2 { name="rasterVis"; version="0.45"; sha256="0x1d28jn6l78lhccbnlnzyr18734f16rcfnfyl9vqpkrn7sgwc3i"; depends=[hexbin lattice latticeExtra raster RColorBrewer sp viridisLite zoo]; };
-  ratelimitr = derive2 { name="ratelimitr"; version="0.3.9"; sha256="0w6i9czcbj8ipd9nn4w4h4pqk6xd8anh00cn60hss9hs18fcb21d"; depends=[assertthat]; };
+  ratelimitr = derive2 { name="ratelimitr"; version="0.4.1"; sha256="06x759jxr5zcnvg9q120n5bpipkb16piw15kxrpk7i918mby889b"; depends=[assertthat]; };
   ratematrix = derive2 { name="ratematrix"; version="1.0"; sha256="09nbgybgdgdkc6bdcxjiy1kdgv398lgih1aqzd7abj5lndlh8pny"; depends=[ape coda corpcor ellipse geiger MASS mvMORPH phylolm Rcpp RcppArmadillo readr]; };
   rateratio_test = derive2 { name="rateratio.test"; version="1.0-2"; sha256="1a2v12z2dr893ha80fhada1820z5ih53w4pnsss9r9xw3hi0m6k5"; depends=[]; };
   raters = derive2 { name="raters"; version="2.0.1"; sha256="16jnx6vv39k4niqkdlj4yhqx8qbrdi99bwzxjahsxr12ab5npbp1"; depends=[]; };
   ratesci = derive2 { name="ratesci"; version="0.3-0"; sha256="1mdx47xpgjrjbb3lybajdmxb87dqr6cvv3fsvwfx0n629mjbih4z"; depends=[]; };
   rationalfun = derive2 { name="rationalfun"; version="0.1-0"; sha256="15949vs9pdjz7426zhgqn7y87xzn79ikrpa2vyjnsid1igpyh0mp"; depends=[polynom]; };
   ratios = derive2 { name="ratios"; version="1.2.0"; sha256="16q9v2lhgklvdp3hi9x3afdldznfpwg775p80m2g5074q2dzjpgg"; depends=[data_table stringr]; };
-  rattle = derive2 { name="rattle"; version="5.1.0"; sha256="0xxf2wpazsk29y2byyk010n59vmzmhm4phpsqvklmsr1v3m10pvp"; depends=[cairoDevice dplyr ggplot2 magrittr RGtk2 rpart_plot stringi stringr tidyr XML]; };
+  rattle = derive2 { name="rattle"; version="5.2.0"; sha256="099anyq4spb7dbikxb29aacqp4xswr66hxjgxiwcvhm9jjryb33v"; depends=[dplyr ggplot2 magrittr rpart_plot stringi stringr tidyr XML]; };
   rattle_data = derive2 { name="rattle.data"; version="1.0.2"; sha256="0cnmyzvy23jc4vz521c3jg0w4165waycvy5014l5773fy19zq75c"; depends=[]; };
   raw = derive2 { name="raw"; version="0.1.6"; sha256="0hnqwa9pwj3k2y0bs6hxrvbwksjyq0q6m73c9hhlafg8g3lkyxnf"; depends=[]; };
+  rayshader = derive2 { name="rayshader"; version="0.5.1"; sha256="1qkv25p0n10zgs3r12i8kwgw6188c0k9a80wg9i12mjpy2pbrxmz"; depends=[doParallel foreach imager magrittr png progress raster Rcpp rgl scales]; };
   rbacon = derive2 { name="rbacon"; version="2.3.4"; sha256="1va1rap2n6mcjfzclqg5h58ggrs2kb4nlaam5ch984w9rzq59g2l"; depends=[coda Rcpp]; };
   rbamtools = derive2 { name="rbamtools"; version="2.16.11"; sha256="1pr1isq9yk5mpi41cnihg4zn5g9az7yr9m42759hibqqyb6nw78a"; depends=[refGenome]; };
-  rbcb = derive2 { name="rbcb"; version="0.1.5"; sha256="0w76jgl75i36xb150m5vlqbd6k0nhxx34fcl0vw9l1in5pwd6qgw"; depends=[httr jsonlite tibble xml2 xts]; };
   rbefdata = derive2 { name="rbefdata"; version="0.3.5"; sha256="12mcqz0pqgwfw5fmma0gwddj4zk0hpwmrsb74dvzqvgcvpfjnv98"; depends=[RColorBrewer RCurl rjson rtematres wordcloud XML]; };
   rbenchmark = derive2 { name="rbenchmark"; version="1.0.0"; sha256="010fn3qwnk2k411cbqyvra1d12c3bhhl3spzm8kxffmirj4p2al9"; depends=[]; };
   rbgm = derive2 { name="rbgm"; version="0.0.5"; sha256="1gz9hxlwmj2ch1ds6mx1nlkwy4fm811jkz5fz3cl6675n11bjdpg"; depends=[dplyr geosphere raster readr rlang sp stringr tibble]; };
   rbhl = derive2 { name="rbhl"; version="0.8.0"; sha256="1avx36as99za19acjh7adb72ckdn69rmiwzcrrqxskzny56vxf0d"; depends=[crul jsonlite plyr tibble xml2]; };
   rbi = derive2 { name="rbi"; version="0.9.1"; sha256="0jfaakzl15dz6bsbcd6y2pnf3bdccs3bx90c6hzsjpvck7fcvxpi"; depends=[data_table ncdf4 reshape2]; };
   rbiouml = derive2 { name="rbiouml"; version="1.8"; sha256="0qvc896sf6idczbxix3klf56paxf0wpfbmga8qqlcyjasv1dsdql"; depends=[RCurl RJSONIO]; };
-  rbison = derive2 { name="rbison"; version="0.6.0"; sha256="09mbhk56ns1qldgcj8qard3dsvsfbnlrq4s4drc46lr1s8lqjd1h"; depends=[crul dplyr ggplot2 jsonlite mapproj plyr sp]; };
+  rbison = derive2 { name="rbison"; version="0.7.0"; sha256="0v9i45pdjdspc1xw1mm3zmmsdnq5s7s656mkkhssmhj603f3mswg"; depends=[crul data_table dplyr ggplot2 jsonlite mapproj plyr sp]; };
+  rbit = derive2 { name="rbit"; version="1.0.0"; sha256="09ywr711gv0vgfims2vfcxk3rnd0iadzlksil0q9159yarapfc59"; depends=[R6]; };
   rbitcoinchartsapi = derive2 { name="rbitcoinchartsapi"; version="1.0.4"; sha256="0r272jvjh3rzch8dmn4s0a5n5k6dsir7pr4qswzfvafqjdiwjajz"; depends=[RCurl RJSONIO]; };
   rbmn = derive2 { name="rbmn"; version="0.9-2"; sha256="1zy832y399cmfmhpyfh7vfd293fylf1ylmp8w8krkmzkmyfa80f2"; depends=[MASS]; };
   rbokeh = derive2 { name="rbokeh"; version="0.5.0"; sha256="1lpbph6bhh9rf5rs0ivp8dchx8i8ylz5nr7xc2xv9bnwlwj35729"; depends=[digest ggplot2 gistr hexbin htmlwidgets jsonlite lazyeval magrittr maps pryr scales]; };
   rbounds = derive2 { name="rbounds"; version="2.1"; sha256="1h334bc37r1vbwz1b08jazsdrf6qgzpzkil9axnq5q04jf4rixs3"; depends=[Matching]; };
   rbraries = derive2 { name="rbraries"; version="0.1.0"; sha256="12vdci4rzjvd419nxh99hpkhjlx86nsmrbjca0am5q0rkc68dgmj"; depends=[crul data_table fauxpas jsonlite tibble]; };
+  rbtc = derive2 { name="rbtc"; version="0.1-5"; sha256="1yw5b8qgvznchqx0zndvkhcrl9ww4sn92x7khzwc9hlbr32j14ls"; depends=[gmp httr openssl rjson]; };
   rbtt = derive2 { name="rbtt"; version="0.1.0"; sha256="1gbsb0vmqxcl28c5nn0rz95bxrvl7i0b17lq90cj5ahbk6x9jblz"; depends=[data_table]; };
   rbugs = derive2 { name="rbugs"; version="0.5-9"; sha256="1kvn7x931gjpxymrz0bv50k69s1x1x9mv34vkz54sdkmi08rgb3y"; depends=[]; };
   rbundler = derive2 { name="rbundler"; version="0.3.7"; sha256="0wmahn59h9vqm6bq1gwnf6mvfkyhqh6xvdc5hraszn1419asy26f"; depends=[devtools]; };
   rbvs = derive2 { name="rbvs"; version="1.0.2"; sha256="1wzxz2ca8f1phhbqr9p7c8sk09cyrdq5jc45g4ddrqvi2q29k28y"; depends=[]; };
   rcane = derive2 { name="rcane"; version="1.0"; sha256="0p2mgkq6fh0n289n2h19c52lnqxl05wvpmd6nwvgnjqwa4wwpa7r"; depends=[]; };
   rcanvec = derive2 { name="rcanvec"; version="0.2.1"; sha256="0gsk2cfiysxjw2lrnpl2l524lvhh9nhnyyh79n8p7vykyqj711yn"; depends=[rgdal sp]; };
-  rcarbon = derive2 { name="rcarbon"; version="1.1.3"; sha256="08gg72gakns9akcsi5j79jxsx8cngbzf3sg0qvpj22xsrp7amxr2"; depends=[doParallel foreach knitr sp]; };
+  rcarbon = derive2 { name="rcarbon"; version="1.2.0"; sha256="0dd7x7i8d592gnn9c3dk706drd3irhi1k4iivlngfm44ck3wlpzn"; depends=[doParallel foreach knitr sp]; };
   rcartocolor = derive2 { name="rcartocolor"; version="0.0.22"; sha256="1dh1n01v70sfmymg1w0f272j6nwnrzawqx5x4ljgh46pzqprx56r"; depends=[ggplot2 scales]; };
   rcbalance = derive2 { name="rcbalance"; version="1.8.5"; sha256="15qlk3cqwsvixl17l1fxcajrabmz4y7q5gz0a1pd66f6i1xskcqq"; depends=[MASS plyr]; };
   rcbsubset = derive2 { name="rcbsubset"; version="1.1.4"; sha256="0sfsmnxs4c8blzg0bb2ffb2xcsjv7pp39arnda988f7b2aas59wj"; depends=[MASS plyr]; };
@@ -10318,25 +10768,28 @@ in with self; {
   rccdates = derive2 { name="rccdates"; version="1.0.0"; sha256="1f87qlw62am2qy1zzrz91vmsn8axhld44gak61xa7046675hm98s"; depends=[rccmisc]; };
   rccmisc = derive2 { name="rccmisc"; version="0.3.7"; sha256="171s2ll759xjdnx0z24ih5ix2vcp4qnmf1nf107gij6wv8k450ab"; depends=[dplyr]; };
   rcdd = derive2 { name="rcdd"; version="1.2"; sha256="1s7idrfvl0hhyckrfiakszqw6fk34f9iiyxspzya3rqyhih014ay"; depends=[]; };
-  rcdk = derive2 { name="rcdk"; version="3.4.7"; sha256="1r7cqr9adcbvw5zcnh0vpfahi5ywcjk8axhpj1pqrv24lb208c6j"; depends=[fingerprint iterators itertools png rcdklibs rJava]; };
+  rcdk = derive2 { name="rcdk"; version="3.4.7.1"; sha256="1d08ajji631792b7fyfwzvcaswh8jlanfsxrj6c1wx7xh3qqpigg"; depends=[fingerprint iterators itertools png rcdklibs rJava]; };
   rcdklibs = derive2 { name="rcdklibs"; version="2.0"; sha256="05g0y00bw1bqykfbwn4q42krwcfl50jcavaw7yyw9a5m34hvw0l8"; depends=[rJava]; };
   rchallenge = derive2 { name="rchallenge"; version="1.3.0"; sha256="1qn2pzch5yk771jsjcsmfsi5vddfb2w50vfqlkmsl6nf5z6sdq9k"; depends=[knitr rmarkdown]; };
+  rcheology = derive2 { name="rcheology"; version="3.5.1.1"; sha256="1yb9d55x6ffam4lirpfign3czx5c14nc1qz0cxqyi9ak63p9mb13"; depends=[]; };
   rchess = derive2 { name="rchess"; version="0.1"; sha256="0qnvvvwcl02rmqra9m7qnhy40cbavswbq6i0jm47x6njmr1gpfhy"; depends=[assertthat dplyr ggplot2 htmlwidgets plyr R6 V8]; };
   rcicr = derive2 { name="rcicr"; version="0.3.4.1"; sha256="1sa13sbhx64cf8szr2811iq4a1asb8d3k0igxw6fbssij2lwbxzp"; depends=[aspace dplyr jpeg matlab scales]; };
+  rcites = derive2 { name="rcites"; version="0.1.0"; sha256="0n8wcyjj41ggmry9lrm7j4f1gcq8l97cdsknkgmb4a0l0da1c6xk"; depends=[data_table httr jsonlite]; };
   rclimateca = derive2 { name="rclimateca"; version="1.0.2"; sha256="012p6vj78m43y8n85diaf5z11h4v0p4s898jmlipvsha11q60csn"; depends=[digest dplyr httr lubridate magrittr mudata2 prettymapr purrr readr reshape2 rlang stringr tibble tidyr]; };
   rclipboard = derive2 { name="rclipboard"; version="0.1"; sha256="0qphr3qrp0k2gnzk27bgfiq3ff6b8564gmkrjw1kri1p7ilf71wx"; depends=[shiny]; };
-  rcmdcheck = derive2 { name="rcmdcheck"; version="1.2.1"; sha256="04gh0drvkikn91i5zmpixhrhyjnsyxwz8k8bx4kgwwrmh1dc7f2s"; depends=[callr clisymbols crayon digest withr]; };
-  rcompanion = derive2 { name="rcompanion"; version="1.13.2"; sha256="0kpr0pxfi8al6zdx0imp9nf9m98h8srimij7gf018ik4v6kjyjiv"; depends=[boot BSDA coin DescTools EMT hermite lattice lmtest multcompView nortest ordinal plyr RVAideMemoire WRS2]; };
+  rcmdcheck = derive2 { name="rcmdcheck"; version="1.3.0"; sha256="13liz9lmx9xgc0f7pjiz3sp8ygvazx2zslbiwz3p9fimfsx1yfsg"; depends=[callr cli crayon desc digest pkgbuild prettyunits R6 rprojroot withr xopen]; };
+  rcompanion = derive2 { name="rcompanion"; version="2.0.0"; sha256="1zbx4r43ql14hqwq6hpyy4dv7igbs6dl96127kriiyfvbkj0cmyw"; depends=[boot BSDA coin DescTools EMT lmtest multcompView nortest plyr]; };
   rcongresso = derive2 { name="rcongresso"; version="0.4.6"; sha256="1xd07vlbcp3msmwvg2nk7acdx513v2wfbq64na0045rsv2v96m44"; depends=[dplyr httr jsonlite magrittr stringr tibble tidyr]; };
-  rcoreoa = derive2 { name="rcoreoa"; version="0.1.0"; sha256="13nfziqxxljnczn3idq3zlc9xkklalfnxbakvhs5bw19jmbd11ba"; depends=[crul jsonlite pdftools]; };
-  rcorpora = derive2 { name="rcorpora"; version="1.2.0"; sha256="0nxd2arzz2617xxcngvcrrrsky9f1b9zdmpv81zr89y08b3xh9f1"; depends=[jsonlite]; };
+  rcoreoa = derive2 { name="rcoreoa"; version="0.3.0"; sha256="0z9kllhk1j7c4sgnd88ngxv7xvr396azg9vr9p6i72ficr7flr64"; depends=[crul hoardr jsonlite pdftools]; };
+  rcorpora = derive2 { name="rcorpora"; version="2.0.0"; sha256="1b8xa81mn3afadz77576vda9b0d99f1k096drxrpqd989g993aqy"; depends=[jsonlite]; };
   rcreds = derive2 { name="rcreds"; version="0.6.6"; sha256="1sdrdgn53kgcdnxfjs8jh0h538vb3b9ixz74lbnp54yp09jpqsri"; depends=[collectArgs digest jsonlite magrittr]; };
-  rcrossref = derive2 { name="rcrossref"; version="0.8.0"; sha256="01k3jpd6awan8r4kc5wjw0did30i2bafzjr8mwaaqv87gni2yiyf"; depends=[bibtex crul dplyr jsonlite miniUI plyr R6 shiny stringr xml2]; };
+  rcrossref = derive2 { name="rcrossref"; version="0.8.4"; sha256="1q58wngr28a0vrafwhxj8jvh42aprv2v1s68mdbbq30rn28yplj7"; depends=[bibtex crul dplyr DT jsonlite miniUI plyr R6 shiny stringr xml2]; };
+  rcrtan = derive2 { name="rcrtan"; version="0.1.0"; sha256="1pg0w9amlxnzv5mrh4p3gnh8959m93dx8bfy2gvbm94isilb969z"; depends=[dplyr magrittr purrrlyr tibble tidyr]; };
   rcrypt = derive2 { name="rcrypt"; version="0.1.1"; sha256="002r5wr0bmqbj014iz8wacj883j6gqcxc786m6p9a7zdrjpx2pqi"; depends=[]; };
-  rcube = derive2 { name="rcube"; version="0.2"; sha256="1vfh0bg0awynbv0kafsn7sqj7sc2rjaap9rmy717qv9p0n6gkypr"; depends=[magrittr]; };
+  rcube = derive2 { name="rcube"; version="0.3"; sha256="0y4sw67g0ws3iywbaz56ccg5q6n2885yfl8rvb45yvwjmdmbg85r"; depends=[magrittr]; };
   rcure = derive2 { name="rcure"; version="0.1.0"; sha256="1pcdc168bwn0b90xy8sdwrm2yvhj26xj11wm8z84m48sxy56j4v8"; depends=[arm MASS plyr smcure survival]; };
   rcv = derive2 { name="rcv"; version="0.2.1"; sha256="0i5z3a918ykl56dv3dvzwwcv550gvjjdg5kfh63jlpaxn9ybmv3f"; depends=[dplyr readr stringr tibble tidyr]; };
-  rda = derive2 { name="rda"; version="1.0.2-2"; sha256="1g2q7c0y138i9r7jgjrlpqznvwpqsj6f7vljqqfzh2l6kcj43vjj"; depends=[]; };
+  rda = derive2 { name="rda"; version="1.0.2-2.1"; sha256="1y4fawslr3i6crjaxhsdb47kfsqkyszdx6avq3r5far5a4pvc639"; depends=[]; };
   rdatacite = derive2 { name="rdatacite"; version="0.4.0"; sha256="14p8albilnzf882m499zfps77jrx0zav9wpz3m047xgs2msnwxqw"; depends=[crul jsonlite oai solrium]; };
   rdatamarket = derive2 { name="rdatamarket"; version="0.6.5"; sha256="1y4493cvhcgyg2j5hadx1fzmv2lzwan78jighi2dzyxxzv6pxccn"; depends=[RCurl RJSONIO zoo]; };
   rdataretriever = derive2 { name="rdataretriever"; version="1.0.0"; sha256="1a1dbzs1jravbhidv9wcs52qbd6zf7wf26hixpqjwiq8gsq9l5gh"; depends=[]; };
@@ -10345,7 +10798,7 @@ in with self; {
   rddensity = derive2 { name="rddensity"; version="0.2.2"; sha256="10530il8fxpgcads6yvj09jwanldlpvjgjqcknl2wly4gmwcwjq9"; depends=[ggplot2 lpdensity]; };
   rddtools = derive2 { name="rddtools"; version="0.4.0"; sha256="1z9sl9fwsq8zs1ygmnjnh3p6h9hjkikbm4z7cdkxw66y0hxgn96s"; depends=[AER Formula ggplot2 KernSmooth lmtest locpol np rdd sandwich]; };
   rde = derive2 { name="rde"; version="0.1.0"; sha256="1zw9gdh90hl0wc5c0xwl5x7566r611wk73sbqdmpzpswjyyl9aqm"; depends=[clipr]; };
-  rdefra = derive2 { name="rdefra"; version="0.3.4"; sha256="05fskap0vvrq08m4gql9gczy04lc3dgxgjcsb57dgp3nng358sf6"; depends=[dplyr httr lubridate rgdal sp tibble xml2]; };
+  rdefra = derive2 { name="rdefra"; version="0.3.5"; sha256="0mj5xpr1xk0r2ph9fvbabmzrb9yqgdaj0bl76xrhkzisdkagf705"; depends=[dplyr httr lubridate rgdal sp tibble xml2]; };
   rdetools = derive2 { name="rdetools"; version="1.0"; sha256="0pkl990viv7ifr7ihgdcsww93sk2wlzp2cg931wywagfp8dijd02"; depends=[]; };
   rdflib = derive2 { name="rdflib"; version="0.1.0"; sha256="1xq378nfvbk8b2nbnr6yswqr351pgli7jcmhcr1ipynkl93rl5qm"; depends=[jsonld readr redland stringi]; };
   rdfp = derive2 { name="rdfp"; version="0.1.2"; sha256="1kznr5p5mhplgpgmc0f4vrs1fwpivwjy52hwfc8k0q0vx53h3fs2"; depends=[curl dplyr httr lubridate plyr purrr readr XML xml2]; };
@@ -10354,23 +10807,23 @@ in with self; {
   rdist = derive2 { name="rdist"; version="0.0.3"; sha256="1jp3s4293h973dpz0waq9abpd8ibp4gxdyk3bwn7a32zfpk4kjza"; depends=[Rcpp RcppArmadillo]; };
   rdiversity = derive2 { name="rdiversity"; version="1.2.1"; sha256="0j67b9mnq2xfbi2hrn1x9vgdv63779d0rcbzndljh37b1x5zlr22"; depends=[ape ggplot2 ggthemes phangorn phytools plyr reshape2 tibble tidyr]; };
   rdlocrand = derive2 { name="rdlocrand"; version="0.3"; sha256="1cv69iy5sx9kdplpk9hnriqzgrm5mjbmhax4cybszhsyaly6r78d"; depends=[AER sandwich]; };
-  rdmulti = derive2 { name="rdmulti"; version="0.1"; sha256="0a2nppb59054ns0ya3igva7xjaivnsj023fd30pzwca99zsmnx6s"; depends=[rdrobust]; };
-  rdnb = derive2 { name="rdnb"; version="0.1-1"; sha256="1mg40jad79mk95ndnljvfvyh9rhbxkw7inpg2vbsixf1ywdljri3"; depends=[brew httr xml2]; };
+  rdmulti = derive2 { name="rdmulti"; version="0.2"; sha256="1sl677kaq5qr2m9nzxfslwzai7h07mdfqjjzrak2xbpgqa44288z"; depends=[rdrobust]; };
+  rdnb = derive2 { name="rdnb"; version="0.1-2"; sha256="1phb86jv2caayr4p95p68jrksai9w922rl3y5hjkw3gkc3jxn09f"; depends=[brew httr xml2]; };
   rdoxygen = derive2 { name="rdoxygen"; version="1.0.0"; sha256="16907969w66xvy62k45rw10qfv4x8z6jkkc6i97vppkgnlvf4d4b"; depends=[devtools]; };
   rdpla = derive2 { name="rdpla"; version="0.2.0"; sha256="0d32bp68z1agymcmjwnds4fkblhjrcx8i2q6f5b7sl4kdfdbjchf"; depends=[crul data_table hoardr jsonlite tibble]; };
-  rdpower = derive2 { name="rdpower"; version="0.1"; sha256="1pi0g980zgy0h3kyiksnbpi59fksm17g9lxinqjf7xiam7pgw99n"; depends=[rdrobust]; };
-  rdrobust = derive2 { name="rdrobust"; version="0.99.1"; sha256="18hq4nmyf8327qdbh7m8y0av6f21pcxaxfqs0qrc07yf6sdcj6ri"; depends=[]; };
+  rdpower = derive2 { name="rdpower"; version="0.3"; sha256="1jdr18xrnws07iczi1f52l3py9fhxgvpina230jyr713hz99hzm3"; depends=[rdrobust]; };
+  rdrobust = derive2 { name="rdrobust"; version="0.99.4"; sha256="0ykz9lgkr95l6h7jk9k8k0yv26hd4iyvgr9j298l388ry9w1ph9w"; depends=[]; };
   rdrop2 = derive2 { name="rdrop2"; version="0.8.1"; sha256="1f4ysck58dm40k4wn9nfjaxym0mbgfkm146iidfkz7agmd1x0xyl"; depends=[assertive digest dplyr httr jsonlite magrittr purrr]; };
   rdryad = derive2 { name="rdryad"; version="0.4.0"; sha256="19ca618hymvpk5byrrglc6iidsgm6wn43fypspssa7b3r1c4xhdc"; depends=[crul curl data_table oai solrium tibble xml2]; };
   rdwd = derive2 { name="rdwd"; version="0.10.2"; sha256="18ghcg1arm5k2gan2h71bx0h27hsqr0mkajb5sha0ijyby3wa4h8"; depends=[berryFunctions pbapply]; };
   re2r = derive2 { name="re2r"; version="0.2.0"; sha256="0xv355h4bps4a0picxmi6i15niq4knlail80fp9xvszyn72pm8gq"; depends=[htmlwidgets Rcpp RcppParallel stringi]; };
   reGenotyper = derive2 { name="reGenotyper"; version="1.2.0"; sha256="13g4fhj25kdk6wbl1hcabcaxcpv0dj0hj2l502wl1aywk1fvmy8m"; depends=[gplots MatrixEQTL zoo]; };
-  reReg = derive2 { name="reReg"; version="1.1.4"; sha256="0333r1rv9nshxmg7x2s5pdf7mk7pmpxdzfk617pmjkvf7qbfqfpa"; depends=[BB dplyr ggplot2 MASS nleqslv plyr purrr SQUAREM survival tidyr]; };
-  reactR = derive2 { name="reactR"; version="0.2.0"; sha256="17jdcby95fxfa3imalllnqsp16py5vqqj4y0za4wli91vd37555q"; depends=[htmltools]; };
+  reReg = derive2 { name="reReg"; version="1.1.6"; sha256="198vgf3294if9zmvl54pgx6ram63pswpjnh44fy7n60g8nza44bb"; depends=[BB dplyr ggplot2 MASS nleqslv plyr purrr SQUAREM survival tibble tidyr]; };
+  reactR = derive2 { name="reactR"; version="0.2.1"; sha256="1abj3lh2vk4pni5gn2vb8sym2j2sx7yvnph86nz9hp6r270d0g86"; depends=[htmltools]; };
   read_dbc = derive2 { name="read.dbc"; version="1.0.5"; sha256="1vrvxkcrk3iw5am9rsadxzf0wsr7z2mdpa5wb0v9jbhda710b4yf"; depends=[foreign]; };
   readBrukerFlexData = derive2 { name="readBrukerFlexData"; version="1.8.5"; sha256="1qmimfxwh6d7s5qrnnk20i2f9l5j1ci3wpfs3qlmggz69jzf589m"; depends=[]; };
   readHAC = derive2 { name="readHAC"; version="1.0"; sha256="0z80ai6xfswwgdfh83l9sq279c97n0wz25bk2l7xfb6w0sndzq53"; depends=[]; };
-  readJDX = derive2 { name="readJDX"; version="0.2.3"; sha256="0qqzplyhpyhf24111y12r0h299wz86scjymfrym2ycxm04116vw5"; depends=[stringr]; };
+  readJDX = derive2 { name="readJDX"; version="0.3.250"; sha256="0h7yfc0y4b67rhh949zknqyjx0jknsld1099y9x563a5lhzwrchv"; depends=[stringr]; };
   readMLData = derive2 { name="readMLData"; version="0.9-7"; sha256="0l752j1jq37j9pdcsbmcb23b5l8fkfsbisfr3yjy3q4rxsphc7k6"; depends=[XML]; };
   readMzXmlData = derive2 { name="readMzXmlData"; version="2.8.1"; sha256="03lnhajj75i3imy95n2npr5qpm4birbli922kphj0w3458nq8g8w"; depends=[base64enc digest XML]; };
   readODS = derive2 { name="readODS"; version="1.6.4"; sha256="1kj648phxvpg480fdhr2sj4l8q306gjdl886zqnkwxif5mw1aq7g"; depends=[cellranger readr xml2]; };
@@ -10380,7 +10833,8 @@ in with self; {
   readbulk = derive2 { name="readbulk"; version="1.1.0"; sha256="0m02isvja0ihvy1fscjdl5f9gfdlmfmabgvpirgd2m9j3lz6mi8s"; depends=[plyr]; };
   reader = derive2 { name="reader"; version="1.0.6"; sha256="1x489q3ljap4zpny68mx83mgxaqiwlkglcy57whwhnh33dd7qp4h"; depends=[NCmisc]; };
   readit = derive2 { name="readit"; version="1.0.0"; sha256="1sq2spjgdc9rq8cr5i9qjmqd4vcf7cknpx5dndwjdqrv112y8bk9"; depends=[crayon haven jsonlite readr readxl]; };
-  readobj = derive2 { name="readobj"; version="0.3"; sha256="0hwxfk27azay8hjz702b10cg395is06wnypqdw4788gm25d0i041"; depends=[Rcpp]; };
+  readmnist = derive2 { name="readmnist"; version="1.0.6"; sha256="0f2kp5r04k47gpvbj8x13c47zsis3bw3y8f5f37sh6jggblqr004"; depends=[]; };
+  readobj = derive2 { name="readobj"; version="0.3.1"; sha256="1hnmj6ydvdss7jbl3h16ip0g993wdfyfm15r8f78ihjlh84swima"; depends=[Rcpp]; };
   readr = derive2 { name="readr"; version="1.1.1"; sha256="1cvw5wdcqk88cp5fyv678mnmp66l3whcd2yh33p2qvx0168bja8s"; depends=[BH hms R6 Rcpp tibble]; };
   readroper = derive2 { name="readroper"; version="0.9.1"; sha256="153iy144c4yxcs2cwr73czy69b4fj4q1g77rb8qmvp6blfwdcd71"; depends=[readr]; };
   readstata13 = derive2 { name="readstata13"; version="0.9.2"; sha256="02mqwpzn7n3pqjxivnd1vlfc47xkyiywfz594x0f6vd2dym8rdwd"; depends=[Rcpp]; };
@@ -10388,8 +10842,8 @@ in with self; {
   readxl = derive2 { name="readxl"; version="1.1.0"; sha256="05ii8knrg4jji6h7bv6bfpn279b6x52yrskdx5rv7b0hcpy22gdn"; depends=[cellranger Rcpp tibble]; };
   realestateDK = derive2 { name="realestateDK"; version="0.1.0"; sha256="02y3c2zww9jakh9a0jqxkgcwshjz1hd5mw63603hyic7q4a07iv3"; depends=[statsDK]; };
   reams = derive2 { name="reams"; version="0.1"; sha256="07hqi0y59kv5lg0nl75xy8n48zw03y5m71zx58aiig94bf3yl95c"; depends=[leaps mgcv]; };
-  rebird = derive2 { name="rebird"; version="0.4.0"; sha256="1awwjr0gsd7hksh84fz5p17qwd857zn03fc2q0kzncy6q6iiw481"; depends=[dplyr httr jsonlite]; };
-  rebmix = derive2 { name="rebmix"; version="2.10.2"; sha256="1m6h85kxp7lirx0pqhlibkd6f2wvgyhbmndrw308imkmzyqhgjz3"; depends=[mvtnorm]; };
+  rebird = derive2 { name="rebird"; version="1.0.0"; sha256="0gp8afj6y3vss2b11v0fqyc3ai67kilicr4fnk5zghljfvbxsxm8"; depends=[assertthat dplyr httr jsonlite]; };
+  rebmix = derive2 { name="rebmix"; version="2.10.3"; sha256="0yhazicibq8h2d7ldv59isapc6f68psawa3vrs1fdzwkrraj6893"; depends=[mvtnorm]; };
   rebus = derive2 { name="rebus"; version="0.1-3"; sha256="0ms3dm6g0fq3jycpgjl7q7kyljxc97cczy2jj0lyviwmipdgjg9d"; depends=[rebus_base rebus_datetimes rebus_numbers rebus_unicode]; };
   rebus_base = derive2 { name="rebus.base"; version="0.0-3"; sha256="1n2khszcya9k6379bdkq47xi2nw9jngiwj7z8a14wfswqydczv6y"; depends=[]; };
   rebus_datetimes = derive2 { name="rebus.datetimes"; version="0.0-1"; sha256="09lv41mywm13avxb0xp8x1a2xz50zxazh3lpg27m16d4cgijmhm5"; depends=[rebus_base]; };
@@ -10398,24 +10852,24 @@ in with self; {
   recexcavAAR = derive2 { name="recexcavAAR"; version="0.3.0"; sha256="0b91jbgqzkgzvk658ckk639yyz1daa0xql3qgl0kzgqg68d53x20"; depends=[kriging Rcpp]; };
   rechonest = derive2 { name="rechonest"; version="1.2"; sha256="0vpff8q5p6in7vjyl62bx3wmksravcg4mpx20qlgy5ia47vyhqp2"; depends=[httr jsonlite RCurl]; };
   recipes = derive2 { name="recipes"; version="0.1.3"; sha256="1vqh3pxs4n1azhnd1lzg91vasya6g323kllhbrw177j7kdxqyimy"; depends=[broom ddalpha dimRed dplyr gower ipred lubridate magrittr Matrix pls purrr RcppRoll rlang tibble tidyr tidyselect timeDate]; };
-  reclin = derive2 { name="reclin"; version="0.1.0"; sha256="1r88rk1yb19lhd1y69h016s26390cg5gnmxjjh143lynm3pbh0sv"; depends=[dplyr ldat lpSolve lvec Rcpp stringdist]; };
+  reclin = derive2 { name="reclin"; version="0.1.1"; sha256="15qrdgjmclffivnljgmmipws9ks41fj4q40wnq0fk14mbv2045g2"; depends=[dplyr ldat lpSolve lvec Rcpp stringdist]; };
   recluster = derive2 { name="recluster"; version="2.8"; sha256="05g8k10813zbkgja6gvgscdsjd99q124jx31whncc4awdsgk69s4"; depends=[ape cluster phangorn phytools picante vegan]; };
-  recmap = derive2 { name="recmap"; version="0.5.33"; sha256="0znmsd7s25i2ildb4ysan10ih8s37rb8f794b6kp6cvy3zm81cbp"; depends=[GA Rcpp sp]; };
+  recmap = derive2 { name="recmap"; version="1.0.0"; sha256="09aa6480lsrcqwh82rp9sijf720pkbihb5rrc3a74wr5svry7rd2"; depends=[GA Rcpp sp]; };
   recoder = derive2 { name="recoder"; version="0.1"; sha256="0wh0lqp7hfd4lx2xnmszv1m932ax87k810aqxdb6liwbmvwqnfgd"; depends=[stringr]; };
   recombinator = derive2 { name="recombinator"; version="1.0.0"; sha256="0amcpicsk270l9h7qgv764wp09phsffdpi4adcxrsrwiwm274ibw"; depends=[crayon]; };
   recommenderlab = derive2 { name="recommenderlab"; version="0.2-3"; sha256="0lgfcwxy97cvi893k1dia3nng3yvclnmv95fszzmkcrf4qi9yy7q"; depends=[arules irlba Matrix proxy registry]; };
   recommenderlabBX = derive2 { name="recommenderlabBX"; version="0.1-1"; sha256="042yh0h8qxj7n9hysrfdxnpb3g0zb6s5b683s7hn5mjc55q7nn4g"; depends=[recommenderlab]; };
   recommenderlabJester = derive2 { name="recommenderlabJester"; version="0.1-2"; sha256="0kr9xc2gih2myn1a8h8dxxmdhibv1sjwjsvlrj9d5hvd1mgfhks5"; depends=[recommenderlab]; };
-  reconstructr = derive2 { name="reconstructr"; version="2.0.0"; sha256="1pa6b8zns9495f1bdifvx19hsy5808hqbxb2bn1srwnr4s3ma1zi"; depends=[openssl Rcpp]; };
+  reconstructr = derive2 { name="reconstructr"; version="2.0.2"; sha256="0pzpd2l1b6y1b1lnd95lpc5s8niz7p56vkmxgyi6g6b25vh9c2vi"; depends=[openssl Rcpp]; };
   recosystem = derive2 { name="recosystem"; version="0.4.2"; sha256="1bn6l23gqmfpr6w60ph7zgv53vy3vnq9zdy5x0a8n1yp6b0lw48x"; depends=[Rcpp RcppProgress]; };
   recurse = derive2 { name="recurse"; version="1.1.0"; sha256="1zgzzhbvdzqgmgzj43yvpyc7ahbkn96l5wyr1iqpnn3ha78fy0p3"; depends=[Rcpp]; };
   red = derive2 { name="red"; version="1.4.0"; sha256="1z8ja8qbwgpbmy4ira9q6x482nw5rm4bksm82y0vc4gwpdxls5z3"; depends=[BAT dismo geosphere jsonlite maptools raster rgdal rgeos sp]; };
-  redR = derive2 { name="redR"; version="1.0.0"; sha256="01safawd9ai34fqxjpc161yzpsk31hfyl8ybcfvdj7a9vdbvcb5i"; depends=[imager]; };
+  redR = derive2 { name="redR"; version="1.0.1"; sha256="0bd1jzjip6p449m9ysi4kybxqljh2wj8z9mrgyk1cy08bjivd1cd"; depends=[imager]; };
   reda = derive2 { name="reda"; version="0.4.1"; sha256="0aq6c2h694kdmjis12g4nxq5hdlzsi42nbnpzq7wic305l5r7nxl"; depends=[ggplot2 Rcpp RcppArmadillo splines2]; };
-  redcapAPI = derive2 { name="redcapAPI"; version="2.1"; sha256="1xdhjr970cg7sr014rviznwg27d2rahc9nfj44b3fghv8jzfc272"; depends=[checkmate chron DBI httr labelVector lubridate stringr tidyr]; };
+  redcapAPI = derive2 { name="redcapAPI"; version="2.2"; sha256="0bszw9px7ddcwnc1p3zpd8426mwym5369hglz3qm5x92va1j4036"; depends=[checkmate chron DBI httr labelVector lubridate readr stringr tidyr]; };
   reddPrec = derive2 { name="reddPrec"; version="0.4.0"; sha256="0zmkaiivvjq8mcaz310zgjjc7y0wgsqv29bf8nhli5qawaczvb9a"; depends=[fields snowfall]; };
-  redist = derive2 { name="redist"; version="1.3-1"; sha256="0rivfi3jpjvhd36rkhlazx4vr7wsig9lf3im1masjmzd4s00zrd8"; depends=[coda doParallel foreach Rcpp RcppArmadillo sp spdep]; };
-  redland = derive2 { name="redland"; version="1.0.17-9"; sha256="01jx6r7zznb6cpi2bx36fpsgig3bkc1nv9afz5s2nfqisxiq48w5"; depends=[roxygen2]; };
+  redist = derive2 { name="redist"; version="1.3-2"; sha256="0qkv2n9jianxm95vk2dqsqghhf2zirab8vhzc8cc8zichjv79f69"; depends=[coda doParallel foreach Rcpp RcppArmadillo sp spdep]; };
+  redland = derive2 { name="redland"; version="1.0.17-10"; sha256="0k28896jsxy1qxnn6iyx3xxasq4y171xfjragqkj568nn9lmzfi8"; depends=[roxygen2]; };
   redlistr = derive2 { name="redlistr"; version="1.0.1"; sha256="07zg0yzrcamaag5xcn33mh8i099r2gyz5p47f38lsg33j7am0m8n"; depends=[plyr raster rgeos sp]; };
   redux = derive2 { name="redux"; version="1.1.0"; sha256="0a551w7fph338mqzxda6y21lsad19dway7w18jw9cv1rgvcp9nvc"; depends=[R6 storr]; };
   refGenome = derive2 { name="refGenome"; version="1.7.3"; sha256="15p0ra2p1pwhy5ixbhsz1g79c5sc2aap4i4c8kil0m2syg9y45sn"; depends=[DBI doBy RSQLite]; };
@@ -10424,7 +10878,7 @@ in with self; {
   refinr = derive2 { name="refinr"; version="0.3.1"; sha256="0q76sr050pg3ahwzcxj08mjig0k2jq8yh7nv6d914pwg3dhq05sn"; depends=[Rcpp stringdist stringi]; };
   refnr = derive2 { name="refnr"; version="0.1.0"; sha256="1gjjzxpyxm1kf1pqk99bd7f2j85rzmww3r1268bccivf19rs881i"; depends=[]; };
   refset = derive2 { name="refset"; version="0.1.1"; sha256="1xbwvm9066g3f7pd34z5jh04vph4ddy2lkcgmf4kiwa1k5czpwg1"; depends=[]; };
-  refuge = derive2 { name="refuge"; version="0.1.1"; sha256="1l9zbhx93f3ib978hlfvkczpy7c88g7ymwiq8grkycfzz52bfz0b"; depends=[dplyr httr jsonlite tibble]; };
+  refuge = derive2 { name="refuge"; version="0.2.0"; sha256="15c1052dp13wcwxi15bnh3x700biw0jcy6b7532rqbgdkv67kqxn"; depends=[dplyr httr jsonlite tibble]; };
   refund = derive2 { name="refund"; version="0.1-17"; sha256="1lz90y3zim0vl2gxiy4zw0qhkvg7i0p64jqabblnlx13f3lzn944"; depends=[boot fda gamm4 ggplot2 grpreg lattice lme4 magic MASS Matrix mgcv nlme pbs RLRsim]; };
   refund_shiny = derive2 { name="refund.shiny"; version="0.3.0"; sha256="0r2xrm4wz35wn9zg4vvw2ysl7zzbz9i080vnbrlp4yrhhlkhpkm1"; depends=[dplyr ggplot2 gridExtra lme4 plotly refund reshape2 shiny tidyr]; };
   refund_wave = derive2 { name="refund.wave"; version="0.1"; sha256="1vnhg7gi5r8scwivqjwhrv72sq8asnm4whx3jk39saphdxpk5hxv"; depends=[glmnet wavethresh]; };
@@ -10432,21 +10886,22 @@ in with self; {
   regclass = derive2 { name="regclass"; version="1.5"; sha256="0kha9b5ki55ggwh8cmlphg1alf1dq8if5dknisfbvd3f2x4dqf02"; depends=[bestglm leaps randomForest rpart rpart_plot VGAM]; };
   regexPipes = derive2 { name="regexPipes"; version="0.0.1"; sha256="1hk0rhvmgzcyf5cyl8hjznl3ll25kpasqikfr6nxd6ian2slvmmb"; depends=[]; };
   regexSelect = derive2 { name="regexSelect"; version="1.0.0"; sha256="0xnb9qa8l63ang4r40ky4qhlrs5mbzvmj98dgij26j3mq1ys1pa7"; depends=[shiny shinyjs]; };
-  reghelper = derive2 { name="reghelper"; version="0.3.3"; sha256="0lsdsxi3nawqdzs7k1xma95mmywl86k517cihiv8q2s4maihsja3"; depends=[ggplot2 lme4 nlme]; };
+  reghelper = derive2 { name="reghelper"; version="0.3.4"; sha256="03ddpa8dhvdsqv0fnbaai4rvblqcr8x6r9z42ljm166pnx5h0spk"; depends=[ggplot2 lme4 nlme]; };
   registry = derive2 { name="registry"; version="0.5"; sha256="1yqfl1g6vsl28zn8brzc39659k8lqsmfms7900j7p64ilydyb2sx"; depends=[]; };
-  reglogit = derive2 { name="reglogit"; version="1.2-5"; sha256="123l9n3m2v16skhj0rf77swlhy0ii6ridz13pp68hrxb72sr243c"; depends=[boot Matrix mvtnorm]; };
+  reglogit = derive2 { name="reglogit"; version="1.2-6"; sha256="1nnn8n5sqhbd3nzmwnpmcsmaxxxaqwbna7xm7q9vk4cqz9cm9b9s"; depends=[boot Matrix mvtnorm]; };
   regnet = derive2 { name="regnet"; version="0.3.0"; sha256="1jqy3zkxn3jms9fm950h1bvhvassbfa5yrl7222z3wa0w66kxpp0"; depends=[glmnet Rcpp RcppArmadillo]; };
-  regplot = derive2 { name="regplot"; version="0.1"; sha256="1jw93pplg6qdrfv9jhnifkhclxzrhg84zs8gkfl0nb40jxb6pc34"; depends=[beanplot sm survival vioplot]; };
+  regplot = derive2 { name="regplot"; version="0.2"; sha256="0j2mra5fqcixyl4wqwpzfng98rdh4xnl79ka7ilfi0jvz2jix84x"; depends=[beanplot sm survival vioplot]; };
   regpro = derive2 { name="regpro"; version="0.1.1"; sha256="02axbq63hsqwg3q2ixr0lpsdai9q6wj57s5k1343q9m0pw90vr73"; depends=[denpro]; };
   regress = derive2 { name="regress"; version="1.3-15"; sha256="1cgr0r49cmr8nzs2lr2cm8lli1i8azyas0lbnf1681kyab15c0r7"; depends=[]; };
   regsel = derive2 { name="regsel"; version="0.2"; sha256="0wwwpawqsqimaldy0zxnqsy23nwp30ypa5dnrnndwhbs4qz99c9w"; depends=[elasticnet glmnet]; };
-  regsem = derive2 { name="regsem"; version="1.1.2"; sha256="0d843h1kv78hsn48ibci6w7y69yqd3q32bidgsqs5dxk980kxcsk"; depends=[lavaan Rcpp RcppArmadillo]; };
+  regsem = derive2 { name="regsem"; version="1.2.0"; sha256="156jvnxf885c42xpbd2ddakgxkbjmzanc240dzdc5z89a78vcy74"; depends=[lavaan Rcpp RcppArmadillo Rsolnp]; };
   regspec = derive2 { name="regspec"; version="2.4"; sha256="18i6k2wqaddrc0dz7v8x3s9205dcfwanqhpnxa9hkpyqzbb17pd3"; depends=[]; };
   regsubseq = derive2 { name="regsubseq"; version="0.12"; sha256="0879r4r8kpr8jd6a3fa9cifm7cv0sqzz8z1alkm1b2fr1625md3g"; depends=[]; };
   regtest = derive2 { name="regtest"; version="0.05"; sha256="1wrrpp2hvkas0yc512gya3pvd0v97pn4v51k5jxkwyd1pp68zd1q"; depends=[]; };
   regtools = derive2 { name="regtools"; version="1.0.1"; sha256="0807r8721qmdl8ahvlzcvqaq2rfvlvhblwbwdpi79fm7dk8vvq1i"; depends=[car dummies FNN mvtnorm]; };
   rehh = derive2 { name="rehh"; version="2.0.2"; sha256="00wxx6w9ahddrg3lz14cqyg3dn0rfcxwy1z8arhdp1pn8d48pahw"; depends=[gplots rehh_data]; };
   rehh_data = derive2 { name="rehh.data"; version="1.0.0"; sha256="1jkvwmnnmfa7iyvrabgcfzw3vfzx0dlgq47s6yf4zayi437v4di0"; depends=[]; };
+  reinforcedPred = derive2 { name="reinforcedPred"; version="0.1.0"; sha256="1q83wnp935wr3z7rzfc6jrqm4p72diq1g0mdn69xnv2ljim4ps83"; depends=[glmnet MASS refund]; };
   reinforcelearn = derive2 { name="reinforcelearn"; version="0.1.0"; sha256="025v8flr8q2p473kz760vywczhvx8b4lakm6rasr9ijgxpbd2jpn"; depends=[checkmate nnet purrr R6]; };
   reinstallr = derive2 { name="reinstallr"; version="0.1.4"; sha256="1fcmy2cyqy4zwh815j2jbmziaiq6kypwsnj5bx0f10dlq3522m5q"; depends=[]; };
   reinsureR = derive2 { name="reinsureR"; version="0.1.0"; sha256="19ayikzcq6z4i7xrlby76yy2nwvrsv6xdfrmvzyr7rz934flh8kd"; depends=[data_table dplyr ggplot2 viridis viridisLite]; };
@@ -10465,135 +10920,144 @@ in with self; {
   relevent = derive2 { name="relevent"; version="1.0-4"; sha256="10bf1s7jmas8ck1izqibqcaqg4z55ciwdpd9pm2697y8z0jhr2rj"; depends=[coda sna trust]; };
   reliaR = derive2 { name="reliaR"; version="0.01"; sha256="000nafjp386nzd0n57hshmjzippiha6s6c4nfrcwl059dzmi088i"; depends=[]; };
   relimp = derive2 { name="relimp"; version="1.0-5"; sha256="0ydn82g8xdqzhf34187080bbpcpw1zdjbj2i3dv1d6d35vvprb5c"; depends=[]; };
-  relsurv = derive2 { name="relsurv"; version="2.1-2"; sha256="0hcvp1n8cvcnpqhwi1gcj3krzsarsk73ivwi75bvsvr3dpgxnwrm"; depends=[date survival]; };
-  rem = derive2 { name="rem"; version="1.2.8"; sha256="1w0lkxjhyssl9343z6lw7dn0cazz9firglvcf74nls4ngkgv0bbd"; depends=[doParallel foreach Rcpp]; };
+  relsurv = derive2 { name="relsurv"; version="2.2-2"; sha256="1r8gmqq4jnn697d4a6m48lf4kzkk6cq160ici60zfd7vb1b1y4vf"; depends=[date survival]; };
+  rem = derive2 { name="rem"; version="1.3.1"; sha256="1q4p26irhhl1lvc0ydv9wmng1y635zm16szpl7gwq1kyn2p90rai"; depends=[doParallel foreach Rcpp]; };
   remMap = derive2 { name="remMap"; version="0.2-0"; sha256="1k2niiaq2lr4inrx443clff9cqqvyiiwd45k7yqjd8ixnbaa3mrk"; depends=[]; };
   rematch = derive2 { name="rematch"; version="1.0.1"; sha256="0y3mshvpvz9csmq8hk8jbabx4nxlv5sckvfzvm6920ndg34xw2d4"; depends=[]; };
   rematch2 = derive2 { name="rematch2"; version="2.0.1"; sha256="16k0i5p7fa3qfxv59ijyn638wpz8n4jrkrnilqmh5g9l8f8bn4h6"; depends=[tibble]; };
   remindR = derive2 { name="remindR"; version="0.0.1"; sha256="0b27v2qm3z8l9vcng8f0rkphjidxkw5n017ysflx180qjizqq632"; depends=[assertthat]; };
   remote = derive2 { name="remote"; version="1.2.1"; sha256="1ihzjxbvas7396cwsi9am4pl94naxa9dnhbnh8k0l5p4a50mk33w"; depends=[gridExtra latticeExtra mapdata raster Rcpp scales]; };
   remoter = derive2 { name="remoter"; version="0.4-0"; sha256="1a7m63l8phv5jnazvdqdrqkaqjwqzaac5y4jm2jn0ypy4n8jvkfl"; depends=[argon2 getPass pbdZMQ png]; };
-  remotes = derive2 { name="remotes"; version="1.1.1"; sha256="07sxlwd09jzlfn7xakw9hwkr9k970lw2mnl0l3rpb5w71968km98"; depends=[]; };
+  remotes = derive2 { name="remotes"; version="2.0.1"; sha256="1xkzlciv68jyf4j8hads0i47nxbgsy1kv7258c6zzyq66z0amhss"; depends=[]; };
   renpow = derive2 { name="renpow"; version="0.1-1"; sha256="0kbfpzr17fvf5zzxpzdhvfmrqmlkba2w3rzxl5q5ac1w3h75gfhc"; depends=[]; };
   rentrez = derive2 { name="rentrez"; version="1.2.1"; sha256="115ffrmsg755ynfwywql7xkcnlvv8ch4nlr1ab11i5923fz6vkvl"; depends=[httr jsonlite XML]; };
   repeated = derive2 { name="repeated"; version="1.1.0"; sha256="0cdyzhhv89186q5nwablcjbqvm7ncq2w5d09iidbajrac9wd1y60"; depends=[rmutil]; };
+  repec = derive2 { name="repec"; version="0.1.0"; sha256="0alr9fbmfxmnnnn1qymy65crcycynwz435jj0vangbb4p0qhv8pm"; depends=[jsonlite]; };
   repfdr = derive2 { name="repfdr"; version="1.2.3"; sha256="0jpk44arg1jib0h2w90h851bs5cd1ss32fab9bfvf9iir2jk8985"; depends=[Rcpp]; };
   repijson = derive2 { name="repijson"; version="0.1.0"; sha256="16iypvsmh5r9pk2k6npp17ya5dgkxihsj29pppd3zvdpm3vvd8k1"; depends=[geojsonio ggplot2 jsonlite OutbreakTools plyr sp]; };
   replicatedpp2w = derive2 { name="replicatedpp2w"; version="0.1-2"; sha256="0nskwkqm9z2aphpim6pvykhc3fphlsbap3r49nghkwjpngd0qzj8"; depends=[spatstat spatstat_utils]; };
   replicationInterval = derive2 { name="replicationInterval"; version="2.0.1"; sha256="1jyvyqr8r2fs1cmbz7zjcc8p116bnkslvx27pqi92y5pxgqvsqvr"; depends=[ggplot2 MASS MBESS pbapply]; };
-  replyr = derive2 { name="replyr"; version="0.9.6"; sha256="1ffx8ziiiqpixabypk4lwnzvnrrylfl40rrjq4c3ys83gnbjm5n2"; depends=[DBI dplyr rlang wrapr]; };
+  replyr = derive2 { name="replyr"; version="0.9.8"; sha256="086ck4vgjamifx621pkc9lyw96brvwhr1gfg4j5amg7r8llfws7r"; depends=[DBI dplyr rlang wrapr]; };
   repmis = derive2 { name="repmis"; version="0.5"; sha256="0z5mjbsl24yjbl0aawr35grcal44rf2xbwv1hy7bdkms94ix79b5"; depends=[data_table digest httr plyr R_cache]; };
   repo = derive2 { name="repo"; version="2.1.3"; sha256="1g72zvj2mg8cxfy1w3d46lkk4hayad64ns5w1y43731whzraxk95"; depends=[digest]; };
   repolr = derive2 { name="repolr"; version="3.4"; sha256="13kmy09c7lk8p1mkdss0krcsfb6d7zcnqpwnl38zkanvh8q3fqhm"; depends=[Matrix Rcpp RcppArmadillo]; };
-  reportROC = derive2 { name="reportROC"; version="3.0"; sha256="0jq3y1mia7nsnab14axyrvafw2b64g2zq25n42zplvm4pyfh1czr"; depends=[pROC]; };
+  reportROC = derive2 { name="reportROC"; version="3.2"; sha256="1fskkligymxxfxbimd1sg1lhrd3pj62nkc41wpxfwacfr1zx57qb"; depends=[pROC]; };
   reportReg = derive2 { name="reportReg"; version="0.2.0"; sha256="063z2szsainld9yb0hmpw23ij4d52qs6zjvdfdzj9h48qd50h38d"; depends=[nlme]; };
   reportRx = derive2 { name="reportRx"; version="1.0"; sha256="0npiflql0lq8sqp6xgydxbw7xdr0zdxj1s2h4bnpmn4clc05r7m4"; depends=[aod cmprsk geoR reshape stringr survival xtable]; };
-  reportr = derive2 { name="reportr"; version="1.2.2"; sha256="1fl4hy4ck4aapy152vn9gjd7w5vgvh2gz2ky6p0wwahah7m9b255"; depends=[ore]; };
+  reportr = derive2 { name="reportr"; version="1.3.0"; sha256="0zynplxqvbmf23cm2rsz3wz2jx6mv55z94mn1k44ny3lx625cnpw"; depends=[ore]; };
   reports = derive2 { name="reports"; version="0.1.4"; sha256="0r74fjmdqax2x5fhbkdxb8gsvzi6v794fh81x4la9davz6w1fnxh"; depends=[]; };
   reporttools = derive2 { name="reporttools"; version="1.1.2"; sha256="1i87xmp7zchcb8w8g7nypid06l2439qyrvpwsjz6qny954w6fa2b"; depends=[xtable]; };
   repr = derive2 { name="repr"; version="0.15.0"; sha256="0myg8d9idpp0gbi7nmcrjq3fa0zy4v73hkg6g5zlpw5vhsmvi8h0"; depends=[base64enc htmltools]; };
   represent = derive2 { name="represent"; version="1.0"; sha256="0jvb40i6r1bh9ysfqwsj7s1g933d7z5fq9d618yjrqr6hbbqsvac"; depends=[]; };
   represtools = derive2 { name="represtools"; version="0.1.2"; sha256="1zkabch49q23kd1786km5cb9wcaccbxds11v9hwjzsgrs15g5w35"; depends=[whisker]; };
-  reprex = derive2 { name="reprex"; version="0.2.0"; sha256="1l44pxjiz3g0jkk3v6rg5jps3llihfiah0qyv40s0bxvxa6gm8v9"; depends=[callr clipr rlang rmarkdown whisker withr]; };
+  reprex = derive2 { name="reprex"; version="0.2.1"; sha256="1ws5gds453xgfili87r35rz1wn2i7jbqissq98csbiddpkgls8sx"; depends=[callr clipr fs rlang rmarkdown whisker withr]; };
   reproducer = derive2 { name="reproducer"; version="0.1.9"; sha256="092gz58sanpawgg0jk1634x9ki0jw460csbb6cywp0ndghswfgwh"; depends=[ggplot2 gridExtra lme4 MASS metafor openxlsx xtable]; };
-  reproducible = derive2 { name="reproducible"; version="0.2.0"; sha256="0qaf9sx270hv73vggkschfwqvg39bmjvnz8wywvia722l3bjkh34"; depends=[archivist crayon data_table devtools digest dplyr fastdigest fasterize gdalUtils git2r googledrive httr magrittr memoise quickPlot R_utils raster Rcpp RCurl rgdal rgeos sf sp versions]; };
+  reproducible = derive2 { name="reproducible"; version="0.2.3"; sha256="1cx6d07lsc6x122i1khgqfzh3nzxxfr4kxs0mjp0ghbsvnpk1rg9"; depends=[archivist backports crayon data_table devtools digest dplyr fastdigest fasterize gdalUtils git2r googledrive httr magrittr memoise quickPlot R_utils raster Rcpp RCurl rgdal rgeos sf sp versions]; };
   repurrrsive = derive2 { name="repurrrsive"; version="0.1.0"; sha256="1ffldcs30xa4wcd825bgpcmqsndfyxx70dfmbb3c86ic9kq17p01"; depends=[tibble]; };
   reqres = derive2 { name="reqres"; version="0.2.1"; sha256="056cjdx0nmf32vma2jkpbaznbaf76kc4jn0w6nv7blq33qlvx37z"; depends=[assertthat brotli jsonlite R6 stringi urltools webutils xml2]; };
   request = derive2 { name="request"; version="0.1.0"; sha256="1q7zd6q00gdqmgq7s7nq1ixmns8zn2amr5zah9rwnsn8dkllj9yh"; depends=[curl httr jsonlite lazyeval magrittr R6 whisker]; };
   requireR = derive2 { name="requireR"; version="1.0.0.1"; sha256="192l7i3q7s2a6n737an3fn258agjsdzh0q2w0vc8jbz7v4f3i92d"; depends=[]; };
   rerddap = derive2 { name="rerddap"; version="0.4.2"; sha256="0jn5fqjjn4nqn6hyaiadq8xdg7vd23l09h9ax6nq8r5iiizpv249"; depends=[data_table digest dplyr hoardr httr jsonlite ncdf4 tibble xml2]; };
-  rerf = derive2 { name="rerf"; version="1.0"; sha256="04q2g9pn34cvvzf790s6wlxd3v2qhwi7yx57cmm3h1ak9b4a6ics"; depends=[dummies Rcpp RcppArmadillo RcppZiggurat]; };
+  rerf = derive2 { name="rerf"; version="1.1.3"; sha256="0mc55rwqbqxr655m6rgn5i63yg0pyn225yrmrd46b9h76j5hz3aj"; depends=[dummies Rcpp RcppArmadillo RcppZiggurat]; };
   resample = derive2 { name="resample"; version="0.4"; sha256="1rckzm2p0rkf42isc47x72j17xqrg8b7jpc440kn24mqw4szgmgh"; depends=[]; };
-  resampledata = derive2 { name="resampledata"; version="0.2.0"; sha256="1s683jhrpkhcn7cxjx5cipgkrbmhk5jr7hxniwc8ka7cbq3y22wl"; depends=[]; };
+  resampledata = derive2 { name="resampledata"; version="0.3.0"; sha256="09hp97zk31f016d65vq64gv413c6bx1dwqy74ai34xk00flkwady"; depends=[]; };
   resemble = derive2 { name="resemble"; version="1.2.2"; sha256="189a6b1y720w9ff8cyqazd2d3v1msbfw8zdqr5rmilxvxmnspccs"; depends=[foreach iterators Rcpp RcppArmadillo]; };
   reservoir = derive2 { name="reservoir"; version="1.1.5"; sha256="1qvjq8j2gxp6b8m3k3822f9na8a1kbwzzsmq70m763dcq293rgiz"; depends=[gtools]; };
-  reshape = derive2 { name="reshape"; version="0.8.7"; sha256="14ir3w4bb3bsz8jsak27nj7kpn227pdgr9653gjq5wc93rywi9ig"; depends=[plyr]; };
+  reshape = derive2 { name="reshape"; version="0.8.8"; sha256="0s6i0sqxg1vldxs6miv8mi0zydxbqzgpmzfiwkj8y7jix3yrfmad"; depends=[plyr]; };
   reshape2 = derive2 { name="reshape2"; version="1.4.3"; sha256="03ki5ka1dj208fc0dclbm0b4xp9d769pah2j9cs34l776p4r9zwa"; depends=[plyr Rcpp stringr]; };
   reshapeGUI = derive2 { name="reshapeGUI"; version="0.1.0"; sha256="0kb57isws8gw0nlr6v9lg06c8000hqw0fvhfjsjyf8w6zwbbq3zs"; depends=[gWidgets gWidgetsRGtk2 plyr reshape2]; };
-  respirometry = derive2 { name="respirometry"; version="0.6.0"; sha256="0dglmf3m8wpqs3jlza6lj8hamb1j1h8b85a4bfrcwkyap7pggcc5"; depends=[birk lubridate marelac measurements seacarb]; };
+  respirometry = derive2 { name="respirometry"; version="0.7.0"; sha256="1anmi0pc54gbrbwcpx7sn8p2cqpyf7d5bf3v9zp4mzy4g7nx7vvj"; depends=[birk lubridate marelac measurements seacarb segmented]; };
   restfulr = derive2 { name="restfulr"; version="0.0.13"; sha256="1dk45mzrr6ka92yjz7hfhkj12kpx1wg4szv1h1mg80mgga4ganbv"; depends=[RCurl rjson S4Vectors XML yaml]; };
   restimizeapi = derive2 { name="restimizeapi"; version="1.0.0"; sha256="1ss6fng5pmqg6cafc256g9ddz8f660c68ysxfan6mn4gdaigz7lb"; depends=[RCurl RJSONIO]; };
   restlos = derive2 { name="restlos"; version="0.2-2"; sha256="083w1ldax8bnf3w4119damma2nz75c3ki187b0275i1mqxqrixp7"; depends=[geometry igraph limSolve rgl som]; };
   restrictedMVN = derive2 { name="restrictedMVN"; version="1.0"; sha256="0qynkg244gzq0yjb0716w7g1sxdq66i11ss8jij86h2mz3ykj137"; depends=[MASS]; };
-  restriktor = derive2 { name="restriktor"; version="0.1-80.711"; sha256="10kbfr7gzah119xm4cnx7br9i9fcga38kymjajw7m2571f4jsji9"; depends=[boot ic_infer lavaan MASS mvtnorm quadprog]; };
+  restriktor = derive2 { name="restriktor"; version="0.1-80.811"; sha256="0yyaiv5777apf2hwf7kyhya9pxkqvsj94shn310dl7gfxks5bvqd"; depends=[boot ic_infer lavaan MASS mvtnorm quadprog]; };
   resumer = derive2 { name="resumer"; version="0.0.3"; sha256="0ilya3v75989zqm16x69w4599ax2s5j2n6f16bmhwydrmzxs1g48"; depends=[dplyr rmarkdown useful]; };
   rethinker = derive2 { name="rethinker"; version="1.1.0"; sha256="02zfx08s5xisv1v4y16iqbddi9kb3fcr249b3414fzvs4nm5as94"; depends=[rjson]; };
-  reticulate = derive2 { name="reticulate"; version="1.8"; sha256="0zwb4ikf021nw7axdn7qlr6bq4xkph3anfy314idkspy1iil4nmr"; depends=[jsonlite Matrix Rcpp]; };
+  reticulate = derive2 { name="reticulate"; version="1.10"; sha256="0bz3lxbisjwn6cv23090zivpy0bxcncr82g5qja13l37i8xnvqsq"; depends=[jsonlite Matrix Rcpp]; };
   retimes = derive2 { name="retimes"; version="0.1-2"; sha256="019sllyfahlqnqry2gqw4w5cy4cavrqnwpwrbb25cgjpdb19raja"; depends=[]; };
   retistruct = derive2 { name="retistruct"; version="0.5.12"; sha256="11m4i29i3zqh9chyjgdhzqj4yqlslfm8y4q0x14xxc2r9lqbkj9l"; depends=[foreign geometry png R_matlab rgl RImageJROI RTriangle sp ttutils]; };
   reutils = derive2 { name="reutils"; version="0.2.3"; sha256="09dhf4s7wz3anrkzqi16abx64gk8ck2142kfd8pv71mjy3x548l7"; depends=[assertthat jsonlite RCurl tibble XML]; };
   reval = derive2 { name="reval"; version="2.0.0"; sha256="1yxkyc6wdp5h3cp8i42a9cf0b1cwr4nmpd7svlp7bpfxlcnqqa0d"; depends=[doParallel foreach]; };
   revdbayes = derive2 { name="revdbayes"; version="1.3.2"; sha256="09xxy3yk2fwd0113dgsz0kd2k1k1ghjv9ay2n03b5cnxqaksa99s"; depends=[bayesplot Rcpp RcppArmadillo rust zoo]; };
+  revealedPrefs = derive2 { name="revealedPrefs"; version="0.4"; sha256="1xd1bvji99mgnz772naz95i0xnrvqdkwxjj7mjblk2qdym95s1d0"; depends=[pso Rcpp RcppArmadillo]; };
   revealjs = derive2 { name="revealjs"; version="0.9"; sha256="0h4csxrcl1rzmj3g01nf0mr990zc8swrf4jvmxwqsyzx9v2cqbnc"; depends=[rmarkdown]; };
-  revengc = derive2 { name="revengc"; version="1.0.0"; sha256="0ccbw61xqjf9y15ghhzx57q3l48xpw9pq2nb11nrqapp5w3f9vzy"; depends=[stringr]; };
+  revengc = derive2 { name="revengc"; version="1.0.3"; sha256="0hls00hnwq9f72v4dnaqsmz81lzddvma81p38qrl85v792l16q61"; depends=[dplyr mipfp stringr truncdist]; };
   revgeo = derive2 { name="revgeo"; version="0.15"; sha256="1ns7d1817475lriss6wwgvdm6lj760p40yxqaifla13c2xb73a55"; depends=[RCurl RJSONIO]; };
   revtools = derive2 { name="revtools"; version="0.2.2"; sha256="0sn7k5vcp09vp6j1bf879jrig382ayhfnwp569z9dxgdh7s18v6n"; depends=[ade4 modeltools plotly shiny shinydashboard SnowballC stringdist tm topicmodels viridisLite]; };
   reweight = derive2 { name="reweight"; version="1.2.1"; sha256="0fv7q1zb3f4vplg3b5ykb1ydwbzmiajgd1ihrxl732ll8rkkfa4v"; depends=[]; };
   rex = derive2 { name="rex"; version="1.1.2"; sha256="0alsadgjgass3wr8y5d247j12qqzg454sc84vpskclrkmz778g5x"; depends=[lazyeval magrittr]; };
-  rexpokit = derive2 { name="rexpokit"; version="0.26.3"; sha256="0af9h7p4gx627iin3l8hbwhkf7yfdrr900a1rq8ib9p4ip7inxmd"; depends=[Rcpp]; };
-  rfPermute = derive2 { name="rfPermute"; version="2.1.5"; sha256="0c7yi395j640mvnr1qlm9hy1w6vva33fa2lqb3amzkafy4j1cs63"; depends=[abind ggplot2 gridExtra randomForest reshape2 swfscMisc]; };
+  rexpokit = derive2 { name="rexpokit"; version="0.26.6"; sha256="06h2k1jzn9rvbgyhhgnshwdajl9psks1sx09108appyf7sqlb9bp"; depends=[Rcpp]; };
+  rfPermute = derive2 { name="rfPermute"; version="2.1.6"; sha256="198vvf8jdcjiv55hmlzd4f9jwr55yxk8m3s6dr9lkcq5r4h6xmrk"; depends=[abind dplyr ggplot2 gridExtra magrittr plyr randomForest reshape2 rlang scales swfscMisc tibble tidyr viridis]; };
   rfUtilities = derive2 { name="rfUtilities"; version="2.1-3"; sha256="0vnhvdkqqqn894abznw97j07gwdvvmvk8vsf4aaxx9yzk44cnk5g"; depends=[cluster randomForest]; };
+  rfacebookstat = derive2 { name="rfacebookstat"; version="1.8.3"; sha256="1a9xj0hpbvjp70v8rim0vpqpdjf6x81jw47nzjl9iggny3c1nb1m"; depends=[bitops data_table dplyr httr jsonlite RCurl]; };
   rfbCNPJ = derive2 { name="rfbCNPJ"; version="0.1.1"; sha256="0zvpazxi184ia2wql0120kw7665dn9cs8a2kv91n79pncabb4xfg"; depends=[fs glue httr magrittr progress purrr readr stringr tibble xml2]; };
   rfigshare = derive2 { name="rfigshare"; version="0.3.7"; sha256="1qgzn0mpjy4czy0pnbi395fxxx84arkg8r7rk8aidmd34584gjiq"; depends=[ggplot2 httpuv httr plyr RJSONIO XML yaml]; };
   rfishbase = derive2 { name="rfishbase"; version="2.1.2"; sha256="1w8jk6qfhyzzmxf8qnqqwckm4syrqimi8k6dqmwflgxz6bsxcz0v"; depends=[dplyr httr lazyeval tidyr]; };
   rfisheries = derive2 { name="rfisheries"; version="0.2"; sha256="16j3hn1py8khqadmh81qsg76c62wzqkaq3fn39z0z5mgynmcm62j"; depends=[assertthat data_table ggplot2 httr rjson]; };
   rfm = derive2 { name="rfm"; version="0.1.0"; sha256="0bd71qk6vrd0jnnwdwlh30mn8v8dwwgmffrd71kbq83gbfp8ry3l"; depends=[assertthat dplyr forcats ggplot2 lubridate magrittr purrr RColorBrewer rlang shiny tidyr]; };
   rfml = derive2 { name="rfml"; version="0.1.0"; sha256="133adpfjpp14m47841k6ybq9lrvby9bxgr5zs4i3akjr2575nq1j"; depends=[httr jsonlite PKI XML]; };
-  rfoaas = derive2 { name="rfoaas"; version="1.1.1"; sha256="1rglqmbhnasc3ciypms3qqgfaj19202cnqdimsi69lvig2rnkca5"; depends=[httr]; };
+  rfoaas = derive2 { name="rfoaas"; version="2.0.0"; sha256="04wx3d6v9zci6i5k3c4nfdycgjmng7f533b9k84kf1pa4lwp45ad"; depends=[httr]; };
   rfordummies = derive2 { name="rfordummies"; version="0.1.3"; sha256="13jqvww65wzac1c8ajkljz89vi4j76y9ga52w3ygajjzg0rn15l5"; depends=[]; };
   rforensicbatwing = derive2 { name="rforensicbatwing"; version="1.3.1"; sha256="1i521h2nmlkhcxfxqir8jfjv0llwr6cz0ck5w6hzplk48044bn16"; depends=[Rcpp]; };
   rgabriel = derive2 { name="rgabriel"; version="0.7"; sha256="1c6awfppm1gqg7rm3551k6wyhqvjpyidqikjisg2p2kkhmyfkyzx"; depends=[]; };
   rgam = derive2 { name="rgam"; version="0.6.6"; sha256="0klf2prw5zj76az66c5hzv23yya1b45l61xdy1zbnggvwh62fqik"; depends=[Rcpp RcppArmadillo]; };
-  rgbif = derive2 { name="rgbif"; version="1.0.0"; sha256="1bjapaxp84rm8p7qp3w814b80h2s2m9zpnah85xyg27ba26jixnz"; depends=[crul data_table geoaxe ggplot2 jsonlite lazyeval magrittr oai tibble whisker wicket xml2]; };
+  rgbif = derive2 { name="rgbif"; version="1.1.0"; sha256="1rn4gpl5paf8qmk535y1gg81xdnlglm70spvw2y72kvdl5jyrzhl"; depends=[crul data_table geoaxe ggplot2 jsonlite lazyeval magrittr oai tibble whisker wicket xml2]; };
   rgcvpack = derive2 { name="rgcvpack"; version="0.1-4"; sha256="1vlvw9slrra18qaizqk2xglzky0i6z3bsan85x908wrg8drss4h5"; depends=[]; };
-  rgdal = derive2 { name="rgdal"; version="1.3-3"; sha256="06dvybwz6rgnqhkc05jgi1j9j0bc8hnwrsz5gs1p3xkbxk9fvr0z"; depends=[sp]; };
+  rgdal = derive2 { name="rgdal"; version="1.3-6"; sha256="07yq2bcgjr8my9120v451r567wkxqzh2fqhxmy5iy91aik5bhhxm"; depends=[sp]; };
   rgdax = derive2 { name="rgdax"; version="0.6.0"; sha256="0kls1v9i3fhiyfns41nqqyz4spf5449hc624vwdw86sgbc1w30w8"; depends=[digest httr jsonlite RCurl]; };
   rgen = derive2 { name="rgen"; version="0.0.1"; sha256="0gl82v09q1ha58wd1014s46wzkx1yf348bc7jkl6s4qdc6c4vsb8"; depends=[]; };
   rgenoud = derive2 { name="rgenoud"; version="5.8-2.0"; sha256="0ffjw8kqmi0zkbskyw3h38a8iapv7hdi9819x5w9a5gmdmm4yv0h"; depends=[]; };
   rgeoapi = derive2 { name="rgeoapi"; version="1.1.0"; sha256="0k8p1l0vrgx0bifbc2i9gxxwih513vbqhjh7fiifyfq3r74i4j7k"; depends=[httr magrittr rjson]; };
   rgeolocate = derive2 { name="rgeolocate"; version="1.0.1"; sha256="1v9kd71wpxna1war0rbp91pc5wdqlganmj2c2fc5m5176dnxd2v3"; depends=[httr Rcpp]; };
-  rgeopat2 = derive2 { name="rgeopat2"; version="0.2.5"; sha256="1zdjnbdxj6yfmb5dl4ajlcklgh0iw17ji3arl0wf9j61pw45kk17"; depends=[readr sf stringr]; };
-  rgeos = derive2 { name="rgeos"; version="0.3-28"; sha256="1dfbphf5g4ggd109j7qh4cycxgslppnja8d4ibwajkfgd3f6iq0q"; depends=[sp]; };
+  rgeopat2 = derive2 { name="rgeopat2"; version="0.2.6"; sha256="04r8q3mig7sp38f3m9g20xlb0h046c04hhrzg4n06b5wkn7298s5"; depends=[readr sf stringr]; };
+  rgeos = derive2 { name="rgeos"; version="0.4-1"; sha256="1zash6cfq6wlk1gn30al9gvb5im1kgl2yw2isrc06nnd4cxjaswd"; depends=[sp]; };
   rgexf = derive2 { name="rgexf"; version="0.15.3"; sha256="0iw1vk32ad623aasf6f8hl0qkj59f1dsc2riwqc775zvs5w7k2if"; depends=[igraph Rook XML]; };
-  rggobi = derive2 { name="rggobi"; version="2.1.21"; sha256="0zi4rhggngm0y8dsjxqlr2mmfc5wzi7l1qcp5gin4bjlbyf8yb3z"; depends=[RGtk2]; };
+  rggobi = derive2 { name="rggobi"; version="2.1.22"; sha256="1g7k4xais9xkjlbvrkadr5d6c5rw4jp9c0gljhm71pa1fc9fcqff"; depends=[RGtk2]; };
   rgho = derive2 { name="rgho"; version="1.0.1"; sha256="0jkfmyn3i50vsqciy96wd2fpik6yfg0sz6rrhwb04jv1dmyz2nfa"; depends=[curl dplyr httr jsonlite lazyeval magrittr memoise readr tibble tidyr]; };
   rgl = derive2 { name="rgl"; version="0.99.16"; sha256="0q8sg8fr0140ilssqhscaxkjc29w1rpp6f4k50amw3zzs9g58ak9"; depends=[crosstalk htmltools htmlwidgets jsonlite knitr magrittr manipulateWidget shiny]; };
   rglobi = derive2 { name="rglobi"; version="0.2.14"; sha256="09f4v98m68ssnf1n0ijsrzawpri3jhv4bz7gzzzpijb75mkb0zwz"; depends=[RCurl rjson]; };
   rglwidget = derive2 { name="rglwidget"; version="0.2.1"; sha256="0siqxn3gyl98i84p0yha821b4rdrp2i0942mkx819wnf7qwrpqcv"; depends=[rgl]; };
+  rgoogleslides = derive2 { name="rgoogleslides"; version="0.3.1"; sha256="06i1ljrib0ap87bxlbpnvx5fr05pwzcmza48gbicvg7fwhz9hs05"; depends=[assertthat httr jsonlite R6]; };
   rgr = derive2 { name="rgr"; version="1.1.15"; sha256="1mrnmbh2crhkwdi37q59hx76afvkhgzgaacg3688q7jp23d58z6x"; depends=[fastICA MASS]; };
-  rgrass7 = derive2 { name="rgrass7"; version="0.1-10"; sha256="0w5vy8163xlfmdrpyp00x25wwq4jnaspzggpvj160azigndsc1kr"; depends=[sp XML]; };
+  rgrass7 = derive2 { name="rgrass7"; version="0.1-12"; sha256="1gsy45j6nq4i6lbr4gyhgmnc9l8g6qxbhsqby9r59d6xz49b2xlv"; depends=[sp XML]; };
+  rgsp = derive2 { name="rgsp"; version="0.2.0"; sha256="1fk0k479srfr0f4a5abyzcrzwy9hr1v5xf0jgs36fbim9bh7njlc"; depends=[dplyr magrittr tibble]; };
   rgw = derive2 { name="rgw"; version="0.1.0"; sha256="12f7bsfg24cld9y47jyqxswgc1bk4adbhhdpycapinbcfhyzc91p"; depends=[]; };
   rhandsontable = derive2 { name="rhandsontable"; version="0.3.6"; sha256="1n631vffbfi8mgbcjgav1209ryj88igb17h73xvjdmglh5f0s6dz"; depends=[htmlwidgets jsonlite magrittr]; };
+  rhierbaps = derive2 { name="rhierbaps"; version="1.1.0"; sha256="0c18xa6ikgs1j1xn1f9q3angqki7iwzfnq1kzdcgk0rvxkcn1rir"; depends=[ape ggplot2 LambertW matrixStats purrr]; };
+  rhli = derive2 { name="rhli"; version="0.0.2"; sha256="1mb6bizqkg7zd8nc5a81fw7d0y0vcv6zh6y28k9vikqmc5l1n21q"; depends=[]; };
+  rhmc = derive2 { name="rhmc"; version="1.0.0"; sha256="1m79f1hx404y0k8lk3n6jnzhr6wwrk83xiym68sq1zvj0wjqiqmw"; depends=[]; };
   rhmmer = derive2 { name="rhmmer"; version="0.1.0"; sha256="0875b29i8rl9iypxp7vw514avq0ac4abdlfq3861cdd3kgycw8jh"; depends=[dplyr magrittr readr rlang tidyr]; };
   rhnerm = derive2 { name="rhnerm"; version="1.1"; sha256="1fkh2pr4kzvqvagdyjlyab7p591s913104gyq05q170gmvlpmiww"; depends=[]; };
-  rhoR = derive2 { name="rhoR"; version="1.1.0.0"; sha256="00djh16s144a9cl2z8zm3za1bsnpzd3i5b9nyqad10xlkgll36li"; depends=[]; };
-  rhosp = derive2 { name="rhosp"; version="1.07"; sha256="09wq96micv9wpr3sx8ir7frkanpy3zi3mwn6rbixw2kxvn5wkkfn"; depends=[]; };
+  rhoR = derive2 { name="rhoR"; version="1.2.0.0"; sha256="04v4cb811d1px7k0afa1x4ixkj8q8syr1rhqgf6j801nqn0dvq8v"; depends=[]; };
+  rhosp = derive2 { name="rhosp"; version="1.10"; sha256="1k0rb4fchjlzinky6ysdvyk0xjsx5986aqwn3yc6s7m3v7y9wb9m"; depends=[]; };
   rhub = derive2 { name="rhub"; version="1.0.2"; sha256="18aq28q4vggbp19l9wcw3dylnyv7sd26wg0i5w8jrva5cq1v2n5j"; depends=[assertthat callr clisymbols crayon desc httr jsonlite parsedate prettyunits R6 rappdirs rcmdcheck rematch whoami withr]; };
   rhymer = derive2 { name="rhymer"; version="1.0.0"; sha256="1k15sd5q6a1ijayl585vc54d1zs4nyrxsfck9bn4nlfdiwc5arwf"; depends=[httr jsonlite]; };
   ri = derive2 { name="ri"; version="0.9"; sha256="00y01n9cx95bjhdpnh7vi0xd5p6al3sxbjszbyxafn7m9mygmnhv"; depends=[]; };
   ri2 = derive2 { name="ri2"; version="0.1.1"; sha256="01iyk9cfs6v7jd1z962vrcdb3bfab5pcq9abkb21yqi82f9w97jf"; depends=[estimatr ggplot2 pbapply randomizr]; };
   riceware = derive2 { name="riceware"; version="0.4"; sha256="0pky0bwf10qcdgg9fgysafr35xbmnr9q0jbh56fawj99nbyj3m70"; depends=[random]; };
   rich = derive2 { name="rich"; version="1.0.1"; sha256="0kasr9gb85qhngfayqy3fvrsr0a066krwxsx21nsxcnss0mrqygr"; depends=[boot vegan]; };
-  ridge = derive2 { name="ridge"; version="2.2"; sha256="01yldzzlqg0xqha31l3py62lyq7fw5xfsbmz6ifzff24gqsf029x"; depends=[]; };
+  ridge = derive2 { name="ridge"; version="2.3"; sha256="15m9klxcxj33s8wkxyamc4awzarg2ncahgaz5cg5m926g8haz9c8"; depends=[]; };
   ridigbio = derive2 { name="ridigbio"; version="0.3.5"; sha256="0526nscxynl3857zybpms1wr3230qby29kxglm919pcdvpjb5kz5"; depends=[httr jsonlite plyr]; };
   ridittools = derive2 { name="ridittools"; version="0.1"; sha256="1m9xbwxb277l4cd85qxmpw66gyavpwamgwr8kyf8vqarzfbwiilr"; depends=[]; };
   riem = derive2 { name="riem"; version="0.1.1"; sha256="0lwhsxb4pm26kb65hs8pa63bsbrgy0zchqm4i6pq9f2r9h8vsm1m"; depends=[httr jsonlite lubridate tibble]; };
   rif = derive2 { name="rif"; version="0.2.0"; sha256="0vk3dmg3qzw3i27wbpfih66rx8sdxq033l7h59h3hy960av4hawh"; depends=[crul data_table jsonlite tibble]; };
+  rifle = derive2 { name="rifle"; version="1.0"; sha256="1r0cfj3vzndgiarl9sb38zmpnpm4p8v9l5cm9c1m6g2q9kvpgpbs"; depends=[MASS]; };
   riingo = derive2 { name="riingo"; version="0.1.0"; sha256="1lkg0xmy3mhx99ywbvkmnkj6i61r5x75g4fnnwj6vdyslvwf3s5x"; depends=[crayon glue httr jsonlite purrr rlang tibble]; };
   rijkspalette = derive2 { name="rijkspalette"; version="1.0.0"; sha256="15yn4sp4p4gcm94clyrijp5mxiz2xcslsq2a8x5x2la1l91kf70i"; depends=[crayon curl imager jsonlite]; };
   rinat = derive2 { name="rinat"; version="0.1.5"; sha256="14ql90f8wrxz9nlykbzfpar1yfwh7p71vks7vhhn8ys09wvj30zk"; depends=[ggplot2 httr jsonlite maps plyr]; };
-  rindex = derive2 { name="rindex"; version="0.12"; sha256="1k9zihvrp955c4lh70zjlsssviy2app8w6mv5ln4nawackbz0six"; depends=[regtest]; };
+  rindex = derive2 { name="rindex"; version="0.12.1"; sha256="0q86dvgmrgm94l05inapm7kbgzlmm1xh3x8plvir43rx6gq0am4h"; depends=[regtest]; };
   ring = derive2 { name="ring"; version="1.0.0"; sha256="03sbgxwzms20gp0hkm5s0dihqkx3qf6bw0jrays7jjzrrwzl5657"; depends=[R6]; };
   rintrojs = derive2 { name="rintrojs"; version="0.2.0"; sha256="0qdry88f6ci5g6k0i8mycm9k5ibnmb9zjppjvqqaflw3g3nsnli2"; depends=[jsonlite shiny]; };
   rio = derive2 { name="rio"; version="0.5.10"; sha256="158xg3vj0glk3fslwi6fywwmfym2b6kn3fdmjligdfy5lf68khix"; depends=[curl data_table foreign haven openxlsx readxl tibble]; };
   rioja = derive2 { name="rioja"; version="0.9-15.1"; sha256="18fyqcykg12mf4ap0a2la30656xq32immqz11ddmrfrb0vpd2h7h"; depends=[mgcv vegan]; };
   ripa = derive2 { name="ripa"; version="2.0-2"; sha256="0n1gaga0d4bb9qdlm7gksa1nwi4y28kbgwr3icwqgihf1bfb9m81"; depends=[Rcpp]; };
+  rise = derive2 { name="rise"; version="1.0.4"; sha256="12r7mbaxp9pjypbpjxlsbqg7spw80gjgm2w0lsvgvclffc50a6ni"; depends=[dplyr ggplot2]; };
   riskR = derive2 { name="riskR"; version="1.1"; sha256="1qadfyb07idfw0bs006kb3917rzda83di6jmsr22941gv78z1wyv"; depends=[]; };
-  riskRegression = derive2 { name="riskRegression"; version="2018.04.21"; sha256="0jyk5pdgr8wqyfxzwbmanqp7ff0fkw3nlz7dx19rqxji1lnj74qa"; depends=[abind cmprsk data_table doParallel foreach ggplot2 lava plotrix prodlim Rcpp RcppArmadillo rms survival timereg]; };
+  riskRegression = derive2 { name="riskRegression"; version="2018.10.03"; sha256="1j0q0a9rkh9gmcidl6kwlmiiwn24cxg9yrx0i72py1b2765kqwk2"; depends=[abind cmprsk data_table doParallel foreach ggplot2 lava plotrix prodlim ranger Rcpp RcppArmadillo rms survival timereg]; };
   riskSimul = derive2 { name="riskSimul"; version="0.1"; sha256="0s2a1mn6g11m96gqscb916caj2aykcs3rkacpqcdnlyzryk1gsnb"; depends=[Runuran]; };
   risksetROC = derive2 { name="risksetROC"; version="1.0.4"; sha256="1fh0jf8v536qzf1v3awx3f73wykzicli4r54yg1z926ccqb4h80l"; depends=[MASS survival]; };
   riskyr = derive2 { name="riskyr"; version="0.1.0"; sha256="1s6yrij5d1vhvzc7nnajjnjmxnhrs0r1psppcvwb0qg3ff181y22"; depends=[diagram vcd]; };
-  rite = derive2 { name="rite"; version="0.3.4"; sha256="196ashcfj5p52qpnpnrkg7vxq87v7vhf1d7z40mk134gmxk2784j"; depends=[knitr markdown RCurl tcltk2]; };
   ritis = derive2 { name="ritis"; version="0.7.2"; sha256="1bn7nfgg9f2y19fp747k96r9kmnrfsqib81a9rzbwv4b97ymg31s"; depends=[crul data_table jsonlite solrium tibble]; };
   riv = derive2 { name="riv"; version="2.0-5"; sha256="0n19jlrs12iysq45xyi3zvghkircg0ww5vbsfpnqkw5b22zsv30s"; depends=[MASS quantreg rrcov]; };
   riverdist = derive2 { name="riverdist"; version="0.15.0"; sha256="145mvqnhv12dcvss54wdycgb3wwk95phl4kx5z0jnh3kmm1zsdl4"; depends=[rgdal sp]; };
@@ -10602,10 +11066,10 @@ in with self; {
   rivervis = derive2 { name="rivervis"; version="0.46.0"; sha256="19jsl5g46jcbc0kg47bsif1wrw9z9brgvwdcxqjc89shnx3hzzfv"; depends=[]; };
   rivr = derive2 { name="rivr"; version="1.2"; sha256="0ankpfixggwdv17ba8i5iln0zzmngqrhvh3dg8lis9kqg6wa89yr"; depends=[Rcpp]; };
   rjade = derive2 { name="rjade"; version="0.1"; sha256="0f1jljj6m1almz0na984n0g314y0rl6a0mx04rbrpipgfgz1h37c"; depends=[V8]; };
-  rjags = derive2 { name="rjags"; version="4-6"; sha256="1bc9bzq31liawg3nzwfczf75vgg56fnqjw0997xvlic4ghgbn96g"; depends=[coda]; };
+  rjags = derive2 { name="rjags"; version="4-8"; sha256="17xmjksj69f9wk4x71jxk4cgiqhaf2fj6bjm0mgzp4qln5x84a8m"; depends=[coda]; };
   rjazz = derive2 { name="rjazz"; version="0.1.7"; sha256="0wmqlpgcr98dvapfmdcph5mdv202rzzsvb06iy5sqvpizpg7pbsz"; depends=[RCurl]; };
   rje = derive2 { name="rje"; version="1.9"; sha256="1dyd34z6lb0p6zmyax5dpzflgc9a4saka33mvdfcxi5pj0rnygaz"; depends=[]; };
-  rjmcmc = derive2 { name="rjmcmc"; version="0.4.1"; sha256="0ww94zdrxdyznpsfxy5fr65w1qjxxr5zignj4bw4291694vfazw1"; depends=[coda madness mvtnorm]; };
+  rjmcmc = derive2 { name="rjmcmc"; version="0.4.3"; sha256="0y2bcfkczlmfnkwmpxa8b65jmfp4pv071wsijv7x4pis28v3mvlr"; depends=[coda madness mvtnorm]; };
   rjson = derive2 { name="rjson"; version="0.2.20"; sha256="0v1zvdd3svnavklh7y5xbwrrkbvx6053r4c5hgnk7hz7bqg7qa1s"; depends=[]; };
   rjsonapi = derive2 { name="rjsonapi"; version="0.1.0"; sha256="0qshll0y8b6lbfrqmp69w9kc9hgfrz94dk68nddshk9ilg14lx4d"; depends=[crul jsonlite plumber R6]; };
   rjstat = derive2 { name="rjstat"; version="0.3.0"; sha256="0r772p0a0x6g96k6r26vb6vjxa68mzjslwg71r0wysa9kqhvypm4"; depends=[checkmate jsonlite]; };
@@ -10614,47 +11078,51 @@ in with self; {
   rknn = derive2 { name="rknn"; version="1.2-1"; sha256="1x9r01314q0wgqwqzd7d13ycjzb4jzghzd3whgjvm2rsmnabai95"; depends=[gmp]; };
   rkt = derive2 { name="rkt"; version="1.5"; sha256="1rgf7dnk4d1b46rns2mb2s1ilxq7hqrh057vrrl00324r4h8bs1k"; depends=[]; };
   rkvo = derive2 { name="rkvo"; version="0.1"; sha256="0ci8jqf9nc8hb063nckxdnp0nlyr4ghby356lxm00anw44jlmw8v"; depends=[Rcpp]; };
-  rlang = derive2 { name="rlang"; version="0.2.1"; sha256="0ghg66vyri8nck4p6kl1nh47qdppbmxvjiyms69nhvipphk4ifpj"; depends=[]; };
-  rlas = derive2 { name="rlas"; version="1.2.4"; sha256="12siq75a4dwyfypyrz8550wj6xjjwfs99kxaglx39c8wc0z64wmy"; depends=[data_table Rcpp uuid]; };
+  rlang = derive2 { name="rlang"; version="0.3.0.1"; sha256="0j7kp6h25wbkvpzr7dpc0zgdpjiwsjjlgprj3mv7bgfalfq1si99"; depends=[]; };
+  rlas = derive2 { name="rlas"; version="1.2.9"; sha256="025hh6fv2kpgi7jvgmjdmh26smhpfaxisj1gq5jcc6xl02jxhpp0"; depends=[BH data_table Rcpp rgeos sf sp uuid]; };
   rld = derive2 { name="rld"; version="1.0"; sha256="1glv4q25z14hcwifwg623h77p4awpsn3nk843pnph4sb3p5qbmn3"; depends=[emdbook MASS survival]; };
   rleafmap = derive2 { name="rleafmap"; version="0.2"; sha256="1i2qczipg7lr6fl35lcl896r54jia7libxx83darrfzc1hd9sdcq"; depends=[knitr raster sp]; };
   rlecuyer = derive2 { name="rlecuyer"; version="0.3-4"; sha256="0d5mcdzn6f5nhwzs165a24z36d0b8gd0cyfyzffvr6p96h8qydy7"; depends=[]; };
   rlfsm = derive2 { name="rlfsm"; version="0.2.0"; sha256="08fdllzk5q77fz6ii83vbmz8dnfwwr3ixs11ia2l1vrm1gdj9gf7"; depends=[doParallel elliptic foreach ggplot2 plyr Rdpack reshape2 stabledist]; };
   rlist = derive2 { name="rlist"; version="0.4.6.1"; sha256="08awy2p7rykc272wvvya4ddszbr7b7s7qv4wr3hs8ylr4jqlh0dv"; depends=[data_table jsonlite XML yaml]; };
   rlm = derive2 { name="rlm"; version="1.2"; sha256="18y735z05k9pms6iv1739qg3q12w099qhs42icxhqs5gcdhz92fm"; depends=[]; };
+  rlmDataDriven = derive2 { name="rlmDataDriven"; version="0.1.0"; sha256="1nfa7ivvrmvw91n77dhx128xxhgv031dzvc8cqb7mzz48lwa225n"; depends=[MASS]; };
   rlme = derive2 { name="rlme"; version="0.5"; sha256="0p26mw4g12l279lh80vqcjs3pvjr759ap2m622490k1i2ralxzif"; depends=[magic MASS mgcv nlme quantreg Rcpp robustbase stringr]; };
   rlo = derive2 { name="rlo"; version="0.3.2"; sha256="0abq42dhapzmh6hvmildbn8zya29c6p1aqbv8avc03g014dwbrd0"; depends=[PythonInR]; };
-  rly = derive2 { name="rly"; version="1.6.1"; sha256="13l1ya0f8mbpwainzs1rbl9zjhf3wxrcfkf0xnj9wybs34k9qzxj"; depends=[futile_logger R6]; };
+  rly = derive2 { name="rly"; version="1.6.2"; sha256="1bb55g3rip524dccaxvahjxsi2cimxqvzc897pxplv3bb10pm0r2"; depends=[futile_logger R6]; };
   rma_exact = derive2 { name="rma.exact"; version="0.1.0"; sha256="1igs92la79akyqj84ah23lpcay7i33k7zgzcwm7sii782fhirivx"; depends=[abind metafor]; };
   rmaf = derive2 { name="rmaf"; version="3.0.1"; sha256="0w247mamwgibr5576p5c2lzaiz2lv2c25n7gw9q99s7rc4bps7j7"; depends=[]; };
-  rmake = derive2 { name="rmake"; version="1.0.0"; sha256="1qvbyd68p37nsqrm77w18znsa6m629qzyd7sl8w98p654pqmjhdw"; depends=[assertthat pryr rmarkdown]; };
-  rmapshaper = derive2 { name="rmapshaper"; version="0.4.0"; sha256="0a911f6q9czni6zpijp63rngnil7jkbcy9f7jz55jr225fgm6g6z"; depends=[geojsonio geojsonlint jsonlite readr sf sp V8]; };
-  rmapzen = derive2 { name="rmapzen"; version="0.3.5"; sha256="0n549y6j056cl7c7pdcn9pixhvs8vpwqg50m380pchbxhxnfjvbq"; depends=[assertthat digest dplyr geojsonio httr jsonlite maps maptools purrr rgdal sf sp tibble tidyr]; };
+  rmake = derive2 { name="rmake"; version="1.1.0"; sha256="00qlki2vps505nxzmfykf1iyq4b0y20nb75hbfcj63ap46z7zk3c"; depends=[assertthat pryr rmarkdown visNetwork]; };
+  rmapshaper = derive2 { name="rmapshaper"; version="0.4.1"; sha256="0kd8hppn4d3z527s3kqz0mll7qjy0pbxbif46dfqx3rci6m62a68"; depends=[geojsonio geojsonlint jsonlite readr sf sp V8]; };
+  rmapzen = derive2 { name="rmapzen"; version="0.4.1"; sha256="1vql1cy38c4kv8pyl81877s587kq4l9sx9nslbgk3l41wvyyvphk"; depends=[assertthat digest dplyr geojsonio httr jsonlite maps maptools purrr rgdal sf sp tibble tidyr]; };
   rmarkdown = derive2 { name="rmarkdown"; version="1.10"; sha256="0mh2f3k98w7pgz0ri34149s4kx5y0kfm27nwq64k0qwxd16hwd9r"; depends=[base64enc evaluate htmltools jsonlite knitr mime rprojroot stringr tinytex yaml]; };
   rmatio = derive2 { name="rmatio"; version="0.12.0"; sha256="1cw7j44rgjgbw2xln7lh29ln53lwfadr8rx0sffkjwc7lbh1r6wa"; depends=[Matrix]; };
-  rmcfs = derive2 { name="rmcfs"; version="1.2.11"; sha256="0pzkxhgn4qcynv0rqbisld7hkpmx8aarxwc165bpipw2z11krdqj"; depends=[dplyr ggplot2 igraph reshape2 rJava yaml]; };
+  rmcfs = derive2 { name="rmcfs"; version="1.2.15"; sha256="0qz8b6z1rslsay0m94y013wychajq850bffv6kg2m0jlf4m16320"; depends=[dplyr ggplot2 igraph reshape2 rJava yaml]; };
   rmcorr = derive2 { name="rmcorr"; version="0.3.0"; sha256="1p05ln653yrd02wmn8wfzawiw6a924d8an0568fcbgl1pdna43b1"; depends=[psych RColorBrewer]; };
   rmdHelpers = derive2 { name="rmdHelpers"; version="1.2"; sha256="1ahzbs8z7wvh1dwbq1kq8wrjrknxi2gck63k70gj0swjvgk0ih5r"; depends=[dplyr knitr]; };
-  rmda = derive2 { name="rmda"; version="1.5"; sha256="13119x23xi912s7wl2p2a24msbczgv75x37p2jsr5w0n4l2k01wi"; depends=[caret MASS pander reshape]; };
+  rmda = derive2 { name="rmda"; version="1.6"; sha256="1m7j79jwii9la47w34ka3yl1n7nql8pfn32if0aycn4yw5sy8dmc"; depends=[caret MASS pander reshape]; };
   rmdformats = derive2 { name="rmdformats"; version="0.3.3"; sha256="06nyrdhy26mvgfb1bnlbd8hslybpc01a30a40wwlc3ay7yp0nzrj"; depends=[bookdown htmltools knitr questionr rmarkdown]; };
   rmdshower = derive2 { name="rmdshower"; version="2.1.1"; sha256="1sjpi5ils31adii51gaa8ly7x93l9ganp6in8rsln6si4jc2ppg9"; depends=[rmarkdown]; };
   rmeta = derive2 { name="rmeta"; version="3.0"; sha256="0vkbnxp579v8zmcv1isdbzj5swpr6fq17zwparxcvzswjc2x9ydr"; depends=[]; };
+  rmetalog = derive2 { name="rmetalog"; version="1.0.0"; sha256="1ndw8drzhf74sjx31zfhhx9q1l6pdn4yx2i8l7klp38d5bsc27xm"; depends=[ggplot2 lpSolve]; };
   rmetasim = derive2 { name="rmetasim"; version="3.1.7"; sha256="0sz4mdprdi6sgkfwfdvh2hr9nxiwq17sw0vggq3cvs7lzb0i6m9r"; depends=[ade4 adegenet gtools pegas]; };
-  rmgarch = derive2 { name="rmgarch"; version="1.3-0"; sha256="0brqjhplvzl0bgsi6x057rb2cg5x372i746dhddr013p1mx0rlcx"; depends=[Bessel ff MASS Matrix pcaPP Rcpp RcppArmadillo Rsolnp rugarch shape spd xts zoo]; };
+  rmgarch = derive2 { name="rmgarch"; version="1.3-5"; sha256="1c9rbd56ssa8msw8s181bn3sjyxchai8q63vchdw5g8kqi5v4l0z"; depends=[Bessel corpcor ff MASS Matrix pcaPP Rcpp RcppArmadillo Rsolnp rugarch shape spd xts zoo]; };
+  rmi = derive2 { name="rmi"; version="0.1.1"; sha256="1y0395l9lhskdrk3x9ps2dmv0sznsba0n6a9fmma33dc9dhywgf9"; depends=[BH Rcpp RcppArmadillo]; };
   rminer = derive2 { name="rminer"; version="1.4.2"; sha256="1hjgcawjrwsf0nv2hlznr1cvpm445yyxc6cq28k2yzyivk74si34"; depends=[adabag Cubist e1071 glmnet kernlab kknn lattice MASS mda nnet party plotrix pls randomForest rpart xgboost]; };
   rmonad = derive2 { name="rmonad"; version="0.5.0"; sha256="0m7hhmn87rfh49hxrjlcxcq6q36niyxlh3w2frld68jkbks71jn5"; depends=[digest glue igraph magrittr pryr]; };
-  rmpw = derive2 { name="rmpw"; version="0.0.3"; sha256="1iidiq0pz88wgh155hfy8mw0cwwwcl77zshcjrbw11zpx6p8qy94"; depends=[gtools MASS]; };
+  rmpw = derive2 { name="rmpw"; version="0.0.4"; sha256="1a49rvdwvmccv4gfir48fw0b9jyrpc2q9zfyk5j9b7nxsx6x7abl"; depends=[gtools MASS]; };
   rms = derive2 { name="rms"; version="5.1-2"; sha256="01wjxlqfz6l1bdsvxqq0lsbps0k86hx3ayb6fl2n2hxccvsfxkzi"; depends=[ggplot2 Hmisc htmlTable htmltools lattice multcomp nlme polspline quantreg rpart SparseM survival]; };
   rms_gof = derive2 { name="rms.gof"; version="1.0"; sha256="1n0h3nrp11f2x70mfjxpk2f3g4vwjaf4476pjjwy49smxxlxwz82"; depends=[]; };
   rmsfact = derive2 { name="rmsfact"; version="0.0.3"; sha256="05s23rfs9prr2ia3h4h9y614xhv91lbgppgf3mrrssxkwz220kd5"; depends=[]; };
   rmsfuns = derive2 { name="rmsfuns"; version="0.0.0.2"; sha256="0by2d6l25lf5vidxbkcxghpxycffyldzzbxcw6h4rm86zmkkv1m0"; depends=[magrittr purrr readr tidyverse xts zoo]; };
   rmumps = derive2 { name="rmumps"; version="5.1.2-4"; sha256="1qdpvyxwb18dapa8xqj8kjjmrnrqixkn29qn6q4cnwdwi1zcbdx6"; depends=[Rcpp]; };
   rmutil = derive2 { name="rmutil"; version="1.1.1"; sha256="0yyzypkz6jjqvhafg6ipml8hrhr0w9l6j2vnmf0gdy90xj78mgag"; depends=[]; };
-  rmweather = derive2 { name="rmweather"; version="0.1.1"; sha256="0p9fdvkdyicbyngsg53vf56fbc3q7yxs2m7iisd1hpaz09gazqlm"; depends=[dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange testthat tibble viridis]; };
+  rmweather = derive2 { name="rmweather"; version="0.1.2"; sha256="1w78qp4irgl2v3hcfmdk3c4yzbaf12lb2whf8nxpj1lcajkpcvq4"; depends=[dplyr ggplot2 lubridate magrittr pdp purrr ranger stringr strucchange tibble viridis]; };
+  rmytarget = derive2 { name="rmytarget"; version="1.1"; sha256="1gjmp0mk91f15sswmi8fhkdr7j3zrl49k02m0jmhhp51g4wazxim"; depends=[dplyr httr jsonlite lubridate stringr]; };
   rnaseqWrapper = derive2 { name="rnaseqWrapper"; version="1.0-1"; sha256="1fa3hmwrpccf09dlpginl31lcxpj5ypxspa0mlraynlfl5jrivch"; depends=[ecodist gplots gtools]; };
   rnaturalearth = derive2 { name="rnaturalearth"; version="0.1.0"; sha256="193b31a7n9jhc607mhwxbpx5gr0fpj3qasm9dbi6kcc7vac3ilgm"; depends=[sf sp]; };
   rnaturalearthdata = derive2 { name="rnaturalearthdata"; version="0.1.0"; sha256="1z32j5lz2lb8xgpkr73majw22k0b49iazj6jjc7j4w9k4zxxa102"; depends=[sp]; };
-  rncl = derive2 { name="rncl"; version="0.8.2"; sha256="17inkk6ajdn1x6g253k2yjyivcryjwn903cd369h1bxlr80amqc0"; depends=[progress Rcpp]; };
+  rncl = derive2 { name="rncl"; version="0.8.3"; sha256="03c8sizm32rdilbvf67gsw81w7i623pajn9blrrkq8rq8j3zdbns"; depends=[progress Rcpp]; };
   rneos = derive2 { name="rneos"; version="0.3-2"; sha256="0m5mmhwnrk9ifv91s5ngmlvqqd7bw1n7glzkgk5i72cw0siiwmh0"; depends=[RCurl XML]; };
   rnetcarto = derive2 { name="rnetcarto"; version="0.2.4"; sha256="0fk5rym6zp049bl1f7bkl2231mjh3pgnxn0nhvmzpsah08rh4rr6"; depends=[]; };
   rngSetSeed = derive2 { name="rngSetSeed"; version="0.3-2"; sha256="00mqjjkhbnvxqkf1kz16gipsf98q62vmhx9v8140qs7c4ljbhc3a"; depends=[]; };
@@ -10666,17 +11134,18 @@ in with self; {
   rnpn = derive2 { name="rnpn"; version="0.1.0"; sha256="10xx8fxgdknv71ks42xxvf38xsmjy6s87y67wi21673v0n07fxb5"; depends=[data_table httr jsonlite plyr]; };
   rnr = derive2 { name="rnr"; version="0.2.1"; sha256="1z9bab3qmq8d79bcvjzldbxlah2w8mqp2ifd0cn1348dafwa0dhi"; depends=[assertthat purrr]; };
   rnrfa = derive2 { name="rnrfa"; version="1.4.0"; sha256="007j6a2hihw7h0vhv6aiz7iymzr3lkzmc1dy5f8b22z5n52k4pl3"; depends=[ggmap ggplot2 httr plyr rgdal rjson sp stringr xml2 xts]; };
-  roadoi = derive2 { name="roadoi"; version="0.5.1"; sha256="139i0nhvmkx66f1k3vg5b59m0b12zd6abq38ggx15vshzs5q1f5w"; depends=[dplyr httr jsonlite miniUI plyr purrr shiny tibble tidyr]; };
-  roahd = derive2 { name="roahd"; version="1.4"; sha256="1snbda40lxb0hyk87alljxclwv3lsjy8qm39ynq8299f1ra1l1lh"; depends=[dplyr magrittr robustbase scales]; };
+  roadoi = derive2 { name="roadoi"; version="0.5.2"; sha256="0fzvg75m5yyz2181n2i208525cixyiwclfij47qd3d61qqzlmlp3"; depends=[dplyr httr jsonlite miniUI plyr purrr shiny tibble tidyr]; };
+  roahd = derive2 { name="roahd"; version="1.4.1"; sha256="0d89d21s32bsjkm8bdiqrbccd3m9badh87vrsb1laawhl4hr3dn9"; depends=[dplyr magrittr robustbase scales]; };
   robCompositions = derive2 { name="robCompositions"; version="2.0.8"; sha256="0i7pjp0ir0n7j5r75ha5avsrqniji1zg7jb93nj9ji3qy286yyxw"; depends=[car cluster cvTools data_table e1071 fpc GGally ggplot2 kernlab MASS mclust pls Rcpp robustbase rrcov sROC VIM zCompositions]; };
   robcbi = derive2 { name="robcbi"; version="1.1-2"; sha256="1n8whpnpsm9imiz8l1jxq5x597ydzb2b54jkvrl05hmwh79p97in"; depends=[robeth]; };
   robcor = derive2 { name="robcor"; version="0.1-6"; sha256="1hw8simv93jq8a5y79hblhqz157wr8q9dzgm0xhvvv5nkzyqkpzf"; depends=[]; };
-  robeth = derive2 { name="robeth"; version="2.7-2"; sha256="049j24hxg7jy80xz615lj7l2mqiybm9zkmwznqpbzrz10s38dj3y"; depends=[]; };
+  robeth = derive2 { name="robeth"; version="2.7-4"; sha256="11ghpy88r02844mw99zxl7qzkic8kcl0gw56a4kdyw84r0lyv8rg"; depends=[]; };
   robets = derive2 { name="robets"; version="1.4"; sha256="0lvzfpv6569pjysblhadd05sglx0qvyr9wipb9cpiya4a1992n61"; depends=[forecast Rcpp]; };
   robfilter = derive2 { name="robfilter"; version="4.1.1"; sha256="1fxqva2khk16sj5ka5zdpaknh2w9n925ys0i4v7ahqvzhnxg6l3b"; depends=[lattice MASS robustbase]; };
   robis = derive2 { name="robis"; version="1.0.1"; sha256="11j86nyslh52fxvl6m2vay638n5gqw4akd9d1mkqnpvrvxhm41l5"; depends=[dplyr httr jsonlite leaflet]; };
-  robmed = derive2 { name="robmed"; version="0.1.1"; sha256="1716vzci0lmim4n28bc2pjky1shjxqrclgllj3hc4dzf8j22dxbz"; depends=[boot ggplot2]; };
-  robotstxt = derive2 { name="robotstxt"; version="0.6.0"; sha256="1xia7xivqnqj0xis6i4qzm3v414ga1m7lmv1piz1b431faq9s1ai"; depends=[future httr magrittr spiderbar stringr]; };
+  robmed = derive2 { name="robmed"; version="0.2.0"; sha256="1xrdlmyawzzglv9s41nm470yc6dn21cqqalsnk77vk72dhib7p3k"; depends=[boot ggplot2 robustbase shiny]; };
+  robmixglm = derive2 { name="robmixglm"; version="1.0-2"; sha256="0z23frjv9yscw0q33s5vlrmisg9an5hksyhcrgcnlan6x63r91kq"; depends=[actuar bbmle boot fastGHQuad MASS numDeriv Rcpp VGAM]; };
+  robotstxt = derive2 { name="robotstxt"; version="0.6.2"; sha256="1c1rhiwkdzvbspwa5km6gp3sjhzmb60ljibb2pf26s931lkr5b6l"; depends=[future future_apply httr magrittr spiderbar stringr]; };
   robreg3S = derive2 { name="robreg3S"; version="0.3"; sha256="0rv8qh98wws1f40d1kmysyy9qin0ngsvwq63cnxbwi290wsnrvls"; depends=[GSE MASS robustbase]; };
   robumeta = derive2 { name="robumeta"; version="2.0"; sha256="1ynlfxlzh442jd1cf02j0f948m16d536a30gb4bf7208baqri1vg"; depends=[]; };
   robust = derive2 { name="robust"; version="0.4-18"; sha256="1b7qh1aff500nd6dh4y2ipmjgdiq8991shflb63pc39vpc0ny6g4"; depends=[fit_models lattice MASS robustbase rrcov]; };
@@ -10686,12 +11155,12 @@ in with self; {
   robustHD = derive2 { name="robustHD"; version="0.5.1"; sha256="14v6l0appy206zx1jcv7m14r2z9g12dpkm6zxzv756rca2yj8fp5"; depends=[ggplot2 MASS perry Rcpp RcppArmadillo robustbase]; };
   robustX = derive2 { name="robustX"; version="1.2-2"; sha256="0pgfq78qd8s40ciqval01bwajy6zfdjms1lbh0b5g0rww6920s6f"; depends=[robustbase]; };
   robustarima = derive2 { name="robustarima"; version="0.2.5"; sha256="0mqlp4xmma74rgwb6rihbzs5nillcnddl6smlxmm8lq1wba27jdj"; depends=[splusTimeDate splusTimeSeries]; };
-  robustbase = derive2 { name="robustbase"; version="0.93-1"; sha256="10fsc50vqngi2a26fgi99bacq4rb05jg8kqw38r4n4khssw06rk4"; depends=[DEoptimR]; };
+  robustbase = derive2 { name="robustbase"; version="0.93-3"; sha256="1nqh1qg1qd1qrxl1w585dqx7ql55qzjny1r4f9hqxpwd7lml07cc"; depends=[DEoptimR]; };
   robustfa = derive2 { name="robustfa"; version="1.0-5"; sha256="04nk5ipml54snsmiqf5sbhx490i46gnhs7yibf4wscrsj1bh2mqy"; depends=[rrcov]; };
   robustgam = derive2 { name="robustgam"; version="0.1.7"; sha256="0s1z7jylj757g91najbyi1aiqnssd207jfm9yhias746540qp3kw"; depends=[mgcv Rcpp RcppArmadillo robustbase]; };
   robustlmm = derive2 { name="robustlmm"; version="2.2-1"; sha256="0xh77jrhjybrbcfzvfzywj8nanqyfgn93rhd1bixw4snz7l1n97x"; depends=[cubature fastGHQuad ggplot2 lattice lme4 Matrix nlme Rcpp RcppEigen robustbase xtable]; };
   robustloggamma = derive2 { name="robustloggamma"; version="1.0-2"; sha256="1cifyasrik010zs8jsz0kzzmwm3qmc0y7h2dahg2ibpwxfcqfcpq"; depends=[numDeriv RobustAFT robustbase survival]; };
-  robustrank = derive2 { name="robustrank"; version="2017.12-2"; sha256="0lcjn77lsdfbcby89hfcz2h049v2fndw7rankdcdgnl6lw2bdpvr"; depends=[kyotil]; };
+  robustrank = derive2 { name="robustrank"; version="2018.10-1"; sha256="0fggn4kv56rvjb84lf18q140flcc6n90bqj59g5zpf8q9l7pqy9z"; depends=[kyotil]; };
   robustrao = derive2 { name="robustrao"; version="1.0-3"; sha256="0gcxxizsg380blrv55vl9f3az8gnr274c6idi0pimhh5c26h7ma6"; depends=[doParallel foreach gmp igraph iterpc quadprog]; };
   robustreg = derive2 { name="robustreg"; version="0.1-10"; sha256="1zwfgmla6wna48vq5hbz7c7fvmb29y949790w2j6x8pkjzr781sz"; depends=[Matrix Rcpp RcppArmadillo]; };
   robustsae = derive2 { name="robustsae"; version="0.1.0"; sha256="0fi1fpqnfj6vkmidlr90kqbn1bxxxqb5qpqqrz9rrimlsvrc4ddl"; depends=[coda lattice MCMCpack mvtnorm pscl]; };
@@ -10699,16 +11168,19 @@ in with self; {
   rocNIT = derive2 { name="rocNIT"; version="1.0"; sha256="18vxyh1wcq6dv62xf2dyl4226cd00n4hlbaqnynl9j5gnrmmsvi1"; depends=[]; };
   rocc = derive2 { name="rocc"; version="1.2"; sha256="00yxbbphhwkg4sj2h7pd9vw86yavl711nk8yylwmjd3qv39qjml0"; depends=[ROCR]; };
   roccv = derive2 { name="roccv"; version="1.1"; sha256="13pwrc31w279l7j58wdz24p8j9jdh53rsavj1mymj92jpm52nfzl"; depends=[glmnet pROC]; };
-  rockchalk = derive2 { name="rockchalk"; version="1.8.111"; sha256="0x82mmsvy41cw1chbrxwjj35fwimb3iv9lrlhxsslgix62xlskvx"; depends=[car lme4 MASS]; };
-  rococo = derive2 { name="rococo"; version="1.1.5"; sha256="062pj62haf0xw74p6c1dd20ipcxka8nn0mxsq490d22kqwm4vf5a"; depends=[Rcpp]; };
+  rockchalk = derive2 { name="rockchalk"; version="1.8.117"; sha256="0xy665iypp6c3whzk5qj3n3f69mm23z08cxdgxnvyrnwp5zznqg8"; depends=[carData lme4 MASS]; };
+  rococo = derive2 { name="rococo"; version="1.1.7"; sha256="1fp3kk5j9kc0vyr50rlbsxjc9p3qz5137sifxsbd297p7zj1fcs2"; depends=[Rcpp]; };
+  rocsvm_path = derive2 { name="rocsvm.path"; version="0.1.0"; sha256="1pd59bzcz96sxpp725pqa7pjh2gdrfapbilp4wccjkf5290zw56v"; depends=[quadprog svmpath]; };
   rodd = derive2 { name="rodd"; version="0.2-1"; sha256="01zrkw4lr21vxk2grfc37iyrcipfdcj5m0i7gnxsvs435y9fqagd"; depends=[Matrix matrixcalc numDeriv quadprog rootSolve]; };
   rodeo = derive2 { name="rodeo"; version="0.7.4"; sha256="16yzj12m9wvcrqxc33rpbyzbq019swi5jxnbda9crfwjdvafaa0d"; depends=[deSolve R6]; };
   rodham = derive2 { name="rodham"; version="0.1.1"; sha256="15mrlx7azvwkwjgfplvs5fhk2nwlg9pay2l99q327p8hx87jr8ra"; depends=[jsonlite plyr splitstackshape stringr tibble]; };
-  roll = derive2 { name="roll"; version="1.0.7"; sha256="059n1pl7692grzv4pmnj8s6cs2zi98lr1s5zi9pxg5vpw7r6h2v9"; depends=[Rcpp RcppArmadillo RcppParallel]; };
-  rollRegres = derive2 { name="rollRegres"; version="0.1.0"; sha256="09vb06j8yyxw7k7dmni8s90wnvdk5l5x09gr76cvp4rjkx8jjlpj"; depends=[checkmate Rcpp RcppArmadillo]; };
+  roll = derive2 { name="roll"; version="1.1.1"; sha256="146x0sfalwxykrj0m08kmrjhihdfnss97hk6x76zd46ji305zk9v"; depends=[Rcpp RcppArmadillo RcppParallel]; };
+  rollRegres = derive2 { name="rollRegres"; version="0.1.1"; sha256="1mbwx1rpb5sj6kzsagf3mg7kz11naqqn5fpvnpdvmv7mcp92wj7x"; depends=[checkmate Rcpp RcppArmadillo]; };
   rollbar = derive2 { name="rollbar"; version="0.1.0"; sha256="1q2ym0vkgbdnibxmwx0bp9c20g3bm8fzwwgs3j4bxg1ydg3gnkj4"; depends=[httr]; };
   rollmatch = derive2 { name="rollmatch"; version="1.0.1"; sha256="1bxd31s30jji97m93z4w4hdxdrfyp947dyzhjwmm13zc59mpfnvs"; depends=[dplyr magrittr]; };
   rollply = derive2 { name="rollply"; version="0.5.0"; sha256="01rh4x9352ixdhrqdysapqx5ynksknyf8n230b340pxwaz2d7xhc"; depends=[plyr Rcpp stringr]; };
+  roloc = derive2 { name="roloc"; version="0.1-1"; sha256="0xynj12gp010c23f6ll9p343vwgxwa22s771p1w2pi65cj2ixhas"; depends=[colorspace]; };
+  rolocISCCNBS = derive2 { name="rolocISCCNBS"; version="0.1"; sha256="100jh5m2c1zp5wg3wd4y2i47dzx1j0g6lfwyqmwk4bz99yzzz5am"; depends=[colorspace roloc]; };
   rolr = derive2 { name="rolr"; version="1.0.0"; sha256="04nm4q0mlr4w6jb0frykzlyknfn3gn02ysqr5ll5jch6wawichy2"; depends=[survival]; };
   rolypoly = derive2 { name="rolypoly"; version="0.1.0"; sha256="11nf7in6n03675l11ynl4rp20rlzy7jli3m518s4sqqxdm8f8ci7"; depends=[data_table dplyr foreach ggplot2 glmnet MASS Matrix matrixcalc]; };
   rootSolve = derive2 { name="rootSolve"; version="1.7"; sha256="08ic6ggcc5dw4nv9xsqkm3vnvswmxyhnqnv1rdjv1h2gy1ivpcq8"; depends=[]; };
@@ -10717,8 +11189,10 @@ in with self; {
   rope = derive2 { name="rope"; version="1.0"; sha256="06qp6h8cjnz0yacm4r39k99hrw74iyq16h5mqfcki7sf3zqbfm7r"; depends=[]; };
   ropenaq = derive2 { name="ropenaq"; version="0.2.6"; sha256="065p4c8l4bqxy00clbjhad8hqw4gg2h2c00b06n2fa5n70z0akgq"; depends=[crul dplyr jsonlite lazyeval lubridate tidyr]; };
   ropensecretsapi = derive2 { name="ropensecretsapi"; version="1.0.1"; sha256="0d4yl0h4am3blskdnzk119hk374c3vx0cg99r20w07yh8jfafrw7"; depends=[RCurl RJSONIO]; };
+  roperators = derive2 { name="roperators"; version="1.1.0"; sha256="0klmk1jmh1iysgf345qa6qyjmn1pkz072ha254k90flprgicg7c6"; depends=[]; };
   ropercenter = derive2 { name="ropercenter"; version="0.2.0"; sha256="1ghn666jhwmkxwrr8pc398nhzvg4y4097pa19m4b08d9mkg9iqlj"; depends=[dplyr foreign haven httr readr rvest stringr tibble tidyr xml2]; };
-  roprov = derive2 { name="roprov"; version="0.1.0"; sha256="0g9jg9j91v705kygs4yx1y6s0cx5krr6kbg3jlgcsda9ldjmj7fy"; depends=[CodeDepends fastdigest igraph]; };
+  roprov = derive2 { name="roprov"; version="0.1.1"; sha256="1b03y61h5j5cirk43hf1z520g47iq9jnkh150qshpk52pd4iq1n0"; depends=[CodeDepends fastdigest igraph]; };
+  roptim = derive2 { name="roptim"; version="0.1.1"; sha256="0r06msb8d3i01inzkyc02zy4zg63sww6jb5cdhzzi5iz768lczc1"; depends=[Rcpp RcppArmadillo]; };
   rorcid = derive2 { name="rorcid"; version="0.4.0"; sha256="1diz14b5jzs9i4khyykq58cbgz87qraivv9lhq5nrrrfi2gryl9r"; depends=[crul data_table fauxpas httr jsonlite tibble xml2]; };
   rorutadis = derive2 { name="rorutadis"; version="0.4.2"; sha256="13a7xj4qw1nd8xgrqhrki3php960lgy9gy38sg4kpvs4j2rwijzc"; depends=[ggplot2 gridExtra hitandrun Rglpk]; };
   rosetteApi = derive2 { name="rosetteApi"; version="1.9.0"; sha256="0pnrfc0dcbh5r3qwfwyb0q063bzwpw4ga60965y5qyxz64cyx74r"; depends=[httr jsonlite]; };
@@ -10727,22 +11201,23 @@ in with self; {
   rosqp = derive2 { name="rosqp"; version="0.1.0"; sha256="0975g7p75bq238g7lr200svsqm9i11z7l331r0igm5ycahljrlsm"; depends=[Matrix R6 Rcpp]; };
   rotationForest = derive2 { name="rotationForest"; version="0.1.3"; sha256="1z2wk3mcs5hrahsxralidbc0dd8gxdbwjpr2f71g4g3isfx1ic8d"; depends=[rpart]; };
   rotations = derive2 { name="rotations"; version="1.5"; sha256="1zksh6hyxdkm0lvvrld6dgkmhszn6wsjrjzr2xbn3af3gsvsydaa"; depends=[ggplot2 Rcpp RcppArmadillo rgl sphereplot]; };
-  rotl = derive2 { name="rotl"; version="3.0.4"; sha256="1zc4418gxpd65n60lspsdm15v7apkv6wkf9jqqs152z079ppdrhx"; depends=[ape assertthat httr jsonlite rentrez rncl]; };
+  rotl = derive2 { name="rotl"; version="3.0.5"; sha256="18iq91r7g79nv6qmkb6kp5vlc3jkymfsdzs83il5rd63cvj6gp46"; depends=[ape assertthat httr jsonlite rentrez rncl]; };
   roughrf = derive2 { name="roughrf"; version="1.0"; sha256="0nwdynqfb9yzjvi1lykgdkch3b4g09aj8vbd6sf5pyx473s066y4"; depends=[mice nnet randomForest]; };
+  roundhouse = derive2 { name="roundhouse"; version="0.0.1"; sha256="142dw9ky6fyp5n8zf5lymx083gi56q6wxj4jm0m8cjb0khiqw2lq"; depends=[httr jsonlite]; };
   routr = derive2 { name="routr"; version="0.3.0"; sha256="1mjf1vwrh1k1kjl1kcgqs29zb8h9m05630czsjkz7li3pmvy9mrv"; depends=[assertthat digest httpuv R6 reqres stringi uuid]; };
   rowr = derive2 { name="rowr"; version="1.1.3"; sha256="1f93c2yni956flwnxgphn340pc7p6yagr5xnmhinjgk9kvsd07yh"; depends=[]; };
-  roxygen2 = derive2 { name="roxygen2"; version="6.0.1"; sha256="0xpzziminf225kjwhyl51kgkzhplyzhk5farhf5s822krl2xqbfj"; depends=[brew commonmark desc digest R6 Rcpp stringi stringr xml2]; };
+  roxygen2 = derive2 { name="roxygen2"; version="6.1.0"; sha256="0ji9k4s1bvfbl8wimfqj1lqr33h1claaz30vb5pgksxyg77j5xaa"; depends=[brew commonmark desc digest pkgload purrr R6 Rcpp stringi stringr xml2]; };
   royston = derive2 { name="royston"; version="1.2"; sha256="1rywc89qzx0hldbq10201bjdhz60pq2gmgd9b9j52mza3w4canjz"; depends=[moments nortest]; };
   rpanel = derive2 { name="rpanel"; version="1.1-4"; sha256="0yzasb4k5jcx3wfsll9k9alyrwc0l1x6pk91nj7cqrdiapw8j519"; depends=[]; };
   rpart = derive2 { name="rpart"; version="4.1-13"; sha256="0k29qx3k3pj5sgrpg0p47yd8i811rmdakaw57bigpq1449asc4cf"; depends=[]; };
-  rpart_plot = derive2 { name="rpart.plot"; version="2.2.0"; sha256="1sh45ixd22nl7lxry82h74k4d5y2yvrs9g2ydqqv5jwkk7hmki11"; depends=[rpart]; };
+  rpart_plot = derive2 { name="rpart.plot"; version="3.0.4"; sha256="0b4y1adn0gnx9igi0nghjp2bf5pa2d5fqz00ra505ljdwj8d0lgx"; depends=[rpart]; };
   rpart_utils = derive2 { name="rpart.utils"; version="0.5"; sha256="00ahvmly6cdf7qhhcic0dbjlljqq8kbhx15rc7vrkd3hzd55c0im"; depends=[rpart]; };
   rpartScore = derive2 { name="rpartScore"; version="1.0-1"; sha256="15zamlzbf6avir8zfw88531zg5c0a6sc5r9v5cy9h08ypf34xf4y"; depends=[rpart]; };
   rpartitions = derive2 { name="rpartitions"; version="0.1"; sha256="1gklsi4pqhk16xp9s49n1lr9ldm1vx61pvphjqsqkzrlxwcpx3j8"; depends=[hash]; };
   rpatrec = derive2 { name="rpatrec"; version="1.0.1"; sha256="0zj461frf6n5s97zq7r52q0blsn2xq2759impgz6v4pr87gmq0si"; depends=[np]; };
   rpca = derive2 { name="rpca"; version="0.2.3"; sha256="135q3g8jmn9rwamrc9ss45cnbfyw8kxcbrf0kinw8asz70fihj9z"; depends=[]; };
   rpcdsearch = derive2 { name="rpcdsearch"; version="1.0"; sha256="17g3x15qgv2hamlj451sb88i83n8svw5vnmjpijp5cnn5d1jx0d6"; depends=[assertthat combinat dplyr stringr xlsx]; };
-  rpdo = derive2 { name="rpdo"; version="0.2.3"; sha256="150kd9pvfr7msrh55vsqcj8lv994izlvhxf4g5n1qbzdcaqsdjzp"; depends=[checkr]; };
+  rpdo = derive2 { name="rpdo"; version="0.2.4"; sha256="153xj2fw6ddqxcdriq825nigf6zdakgx5ik2yr4w4bayam1qa5fq"; depends=[checkr]; };
   rpf = derive2 { name="rpf"; version="0.59"; sha256="06gibjngl27mmvmni6ncz5qa4nlbxlna57f13607a9r739146378"; depends=[mvtnorm RcppEigen]; };
   rpg = derive2 { name="rpg"; version="1.6"; sha256="1vn5cswrkmw98z1dr0f0yjkz3n8kwvjb4zknqg81fzqsagfc89yx"; depends=[getPass RApiSerialize Rcpp uuid]; };
   rpgm = derive2 { name="rpgm"; version="1.1.2"; sha256="0pbja877gb3mn7m78lfdl217dm7qsrblq6gwrjh5wbv1nd532hvz"; depends=[]; };
@@ -10750,13 +11225,13 @@ in with self; {
   rpicosat = derive2 { name="rpicosat"; version="1.0.1"; sha256="1zj2d6jairmvya91vhv9kpkf34zmzl9vlha5yvfjj0j0apmqc0li"; depends=[]; };
   rpinterest = derive2 { name="rpinterest"; version="0.3.1"; sha256="0kkf73byhgzqxw85wda3nh7qsq81pc035vi6z3fhnvb9ssszwakc"; depends=[httr magrittr rjson]; };
   rpivotTable = derive2 { name="rpivotTable"; version="0.3.0"; sha256="0ndhsw4nnz6wf0v8dh4sz8867m01jjkzw6aq7f490z1ypa3d9fv5"; depends=[htmlwidgets]; };
-  rplos = derive2 { name="rplos"; version="0.8.0"; sha256="0l38zllzklsy6q2l2r0v2x8wcsldnxjhilcsq5ykl1k35gbva19y"; depends=[crul dplyr ggplot2 jsonlite lubridate plyr reshape2 solrium whisker]; };
-  rplotengine = derive2 { name="rplotengine"; version="1.0-6"; sha256="1x9lf5h6cmjyi5xyvmk2ii2dwkwmjqbg0m1fhfabay0flqc7qdm0"; depends=[xtable]; };
+  rplos = derive2 { name="rplos"; version="0.8.4"; sha256="1hx1r9ag62a2mv8zqag0i1f10k5rfdygjhqinql4cgzgrdi7y3h7"; depends=[crul dplyr ggplot2 jsonlite lubridate plyr reshape2 solrium whisker]; };
+  rplotengine = derive2 { name="rplotengine"; version="1.0-7"; sha256="1bbciq84l0h6g4qajlcqg3v66g2rspflv6k7x5h5qzwlcb4p4dps"; depends=[xtable]; };
   rpms = derive2 { name="rpms"; version="0.3.0"; sha256="0kdxjn2aij83ax0g1ipdb7qrvpqn67vhs3z54ihj1kbx4i8pzs9g"; depends=[Rcpp RcppArmadillo]; };
   rpn = derive2 { name="rpn"; version="1.0"; sha256="0wk8y4yk6wqzbq5bqv6zncfp9az5vn8xgwh426pk3bxm3v4xi16i"; depends=[BBmisc checkmate]; };
   rpnf = derive2 { name="rpnf"; version="1.0.5"; sha256="07byg0ym4d2cr6fp74z379jhsaw4c0xrwf622dvhwa4frn4anl60"; depends=[]; };
   rportfolios = derive2 { name="rportfolios"; version="1.0-1"; sha256="00xxh85jpl0rw8fv84i7zmq0psc92pq7hharnr4szbmhgz8kbc35"; depends=[truncdist]; };
-  rpostgis = derive2 { name="rpostgis"; version="1.4.0"; sha256="0rgi7ax2n2fln12501zshwaz23nns9qk4vy1ylnaqb4bg0x30gn4"; depends=[DBI raster rgeos RPostgreSQL sp]; };
+  rpostgis = derive2 { name="rpostgis"; version="1.4.1"; sha256="15s5k5grg2va5dkszpbrk0kgbmrq5xhg7jm37q90m3ydbgln2ys2"; depends=[DBI raster rgeos RPostgreSQL sp]; };
   rpostgisLT = derive2 { name="rpostgisLT"; version="0.6.0"; sha256="1adwpkfndm6n3s9xcx8zrwnj6bmgvq4nzs072fnl5i6kjy6ngjm6"; depends=[adehabitatLT DBI htmltools leaflet lubridate magrittr mapview rpostgis RPostgreSQL sf shiny shinyWidgets sp]; };
   rppo = derive2 { name="rppo"; version="1.0"; sha256="0agqys52l8bb3mc3bpawym12phl5r1ymalfvgrq5w6n78lpzcxls"; depends=[httr jsonlite plyr readr]; };
   rpql = derive2 { name="rpql"; version="0.6"; sha256="0kbxhh0pacgh5d490665a5k00qh93rv5k7v3g73vrgn6lc085a54"; depends=[gamlss_dist lme4 MASS Matrix mvtnorm Rcpp RcppArmadillo]; };
@@ -10764,14 +11239,14 @@ in with self; {
   rprime = derive2 { name="rprime"; version="0.1.0"; sha256="1v6n1qi0i7x8xgizbyvp1mnwc316lsan4rvam44fgjj45fcd79gd"; depends=[assertthat plyr stringi stringr]; };
   rprintf = derive2 { name="rprintf"; version="0.2.1"; sha256="0rwqpln0igxb4m6d6jyp7h3shfb8sbp0kj7cgkffjp88hn9qm4h3"; depends=[stringi]; };
   rprojroot = derive2 { name="rprojroot"; version="1.3-2"; sha256="12r3fdxmi2pmwn6ic3rhg0b20ll5z420m0d8fziv1n21961namnz"; depends=[backports]; };
-  rpsftm = derive2 { name="rpsftm"; version="1.2.2"; sha256="0xfw2rc8k9nnwzmzf803w5aarhm09hvi8ry5gi21d9n8fxsj1q97"; depends=[ggplot2 rootSolve survival]; };
+  rpsftm = derive2 { name="rpsftm"; version="1.2.3"; sha256="1l0674jsi5ngazmbl13wm73xwxyqy4z6k7p0j46j6wcv84ljj7ss"; depends=[ggplot2 rootSolve survival]; };
   rpst = derive2 { name="rpst"; version="1.0.0"; sha256="10cbgj67lqgh5bawwa0nwj9kfl3jg4vdm121kc61q199v8dw7nrz"; depends=[plotrix survival]; };
   rpsychi = derive2 { name="rpsychi"; version="0.8"; sha256="1h40kbqvvwwjkz5hrclj6j22zhav3yyfbbhqahs1whwjkksnam4w"; depends=[gtools]; };
   rptR = derive2 { name="rptR"; version="0.9.21"; sha256="0wqh9d372s2222qm5w0wx77l2sj7zvdnl7zvxcn5wfs3cz84fj15"; depends=[lme4 pbapply]; };
   rpubchem = derive2 { name="rpubchem"; version="1.5.10"; sha256="06j9ir65ykky5hdbyv74fnddwqd39jxvr6jig0kjqisc75k4spjz"; depends=[base64enc car data_table fingerprint iterators itertools RCurl RJSONIO stringr XML]; };
   rqPen = derive2 { name="rqPen"; version="2.0"; sha256="13m21v753njaramgpbhn0lb793b6946crv5v8vl127w38q0z3wyd"; depends=[quantreg regpro]; };
-  rqdatatable = derive2 { name="rqdatatable"; version="0.1.1"; sha256="14m0sfl46kkzwv4pmgl8wc4sxb9b14lbx3m3c7r6d3iv6jjmaaj2"; depends=[data_table rquery wrapr]; };
-  rquery = derive2 { name="rquery"; version="0.5.0"; sha256="1ssf7mxj8dy78v9a9bmaxppp2cygpcqndir40vavl6fm9v34s0nq"; depends=[wrapr]; };
+  rqdatatable = derive2 { name="rqdatatable"; version="1.1.1"; sha256="1634llj4ykkn85ijj978k9rxclp7ff687vsvr9i2v5xppg7sbr5h"; depends=[data_table rquery wrapr]; };
+  rquery = derive2 { name="rquery"; version="1.1.1"; sha256="0w7fs5mvw8dzaiw7xl75a2rl99nhfay5mwl12smakd1zpsn0v8n3"; depends=[wrapr]; };
   rr = derive2 { name="rr"; version="1.4"; sha256="1c2h6ibjfwrjfqh1if3c90pdh0g2rf3p71j4p9w23xbbrx2l80pl"; depends=[arm coda magic MASS]; };
   rrBLUP = derive2 { name="rrBLUP"; version="4.6"; sha256="1bw4pjj9hm9ik5bvvklnlkykhlqm6k7pbkma1iwc3kbg8shpbd18"; depends=[]; };
   rrBlupMethod6 = derive2 { name="rrBlupMethod6"; version="1.3"; sha256="1qwv954mhry46ff2ax48xcmnasygi5alv8d413g3qbk2da6i0d8l"; depends=[]; };
@@ -10782,7 +11257,7 @@ in with self; {
   rrd = derive2 { name="rrd"; version="0.2.1"; sha256="1n4590h3xzja7j8fzay4b8rp98wnilg2znnkbw4ffk9fdac2wr5l"; depends=[assertthat tibble]; };
   rrecsys = derive2 { name="rrecsys"; version="0.9.7.3"; sha256="034p7ncnzlkniicl5nd58m9wjy7mc00f027zpg5das226svhfywf"; depends=[ggplot2 knitr MASS Rcpp registry]; };
   rredis = derive2 { name="rredis"; version="1.7.0"; sha256="0wzamwpmx20did8xj8x9dllri2ps83viyqjic18ari7i4h1bpixv"; depends=[]; };
-  rredlist = derive2 { name="rredlist"; version="0.4.0"; sha256="0j2hab26zs9dyg9fggza7yffbvwvnmrk5frbfs2ys8h3hg2x6ncy"; depends=[crul jsonlite]; };
+  rredlist = derive2 { name="rredlist"; version="0.5.0"; sha256="12dqilcwyxad5yjz8gh29ycwj2rbm1g0hxfsqkl7zsjaz5lbcka0"; depends=[crul jsonlite]; };
   rrefine = derive2 { name="rrefine"; version="1.0"; sha256="1lh3vddrp5k9bhz5spv93w0qm9z5lskpdgxfksys0l3275hzx1lm"; depends=[httr readr rlist]; };
   rreg = derive2 { name="rreg"; version="0.2.1"; sha256="05c2yj58zn43zkmqp4iyblsixsq76hsjkchffl5rkqynvgxi0qzi"; depends=[directlabels ggplot2]; };
   rrepast = derive2 { name="rrepast"; version="0.7.0"; sha256="1s596sk993aam5rsb4as2y3n5wcgjlnb25b29l59z0xks1v04mnc"; depends=[digest doParallel foreach ggplot2 gridExtra lhs rJava sensitivity xlsx]; };
@@ -10792,44 +11267,45 @@ in with self; {
   rroad = derive2 { name="rroad"; version="0.0.5"; sha256="09q5r9wq3vm5wy5aigx9wffv7m0njlp3sma1djm6cp7hhwgss0nj"; depends=[]; };
   rrpack = derive2 { name="rrpack"; version="0.1-7"; sha256="0svrw2ik59hjyfb0kag4nv8ilcaz7irmkp7ndbxxn0jg7dacb411"; depends=[ggplot2 glmnet lassoshooting MASS Rcpp RcppArmadillo]; };
   rrr = derive2 { name="rrr"; version="1.0.0"; sha256="0sv6k70mv325yjm8yjy4dw8cqc0xc071iiv94fk1l1yfz0n67prz"; depends=[dplyr GGally ggplot2 magrittr MASS plotly Rcpp]; };
-  rsMove = derive2 { name="rsMove"; version="0.2.4"; sha256="01iag63vskm68zjgq5qmgiimhmxcmp0mq6qarzsr3jlgmxix6kqs"; depends=[caret gdalUtils ggplot2 igraph lattice lubridate pryr randomForest raster RCurl rgdal sp spatialEco]; };
+  rrtable = derive2 { name="rrtable"; version="0.1.0"; sha256="1rvqb32fr63dkm5kz291pxzli8yi10k76v0lm1qdn28cx1l6ff3y"; depends=[devEMF editData flextable ggplot2 magrittr moonBook officer purrr readr rmarkdown rvg shiny stringr ztable]; };
+  rsMove = derive2 { name="rsMove"; version="0.2.6"; sha256="15mr2i0fv1k230ncfkbdk564rydsq9zy9bgwackbg9zlix8x7874"; depends=[caret gdalUtils ggplot2 igraph lattice lubridate plyr pryr randomForest raster RCurl rgdal sp spatialEco]; };
   rsae = derive2 { name="rsae"; version="0.1-5"; sha256="1f3ry3jwa6vg2vq2npx2pzzvfwadz8m48hjrqjk860nfjrymwgx5"; depends=[]; };
   rsample = derive2 { name="rsample"; version="0.0.2"; sha256="10lmpy4ca045j2fxbz5xzl1w9242dkp6sc8hhrk0fxs0dkfb7amf"; depends=[broom dplyr purrr recipes rlang tibble tidyr]; };
   rsatscan = derive2 { name="rsatscan"; version="0.3.9200"; sha256="00vgby24jknq8nl7rnqcwg7gawcxhwq8b7m98vjx2hkqx39n4g21"; depends=[foreign]; };
-  rscala = derive2 { name="rscala"; version="3.0.2"; sha256="0gbi2q63pbl8izyq8wjrjn9d0746ylak8fp7zsjzw56gjpak79q3"; depends=[]; };
+  rscala = derive2 { name="rscala"; version="3.2.3"; sha256="11p626ys62xgvs0pd5hsnywnhvgm5m082s6laqg823az8ybs9wyp"; depends=[]; };
   rscimark = derive2 { name="rscimark"; version="1.0"; sha256="1jsjz4d5bnxb90qqzz42m4nyvm8d8w8bs0m1r5g2n78zmckqb8vy"; depends=[checkmate]; };
   rsconnect = derive2 { name="rsconnect"; version="0.8.8"; sha256="019phwamg2irb0ak9y0sn25ihi0a9sfdpa02dz9x0bhpcg55x0li"; depends=[digest packrat PKI RCurl RJSONIO rstudioapi yaml]; };
-  rscopus = derive2 { name="rscopus"; version="0.5.11"; sha256="1h0lj68znfy1jc2b7qbxj0cq8y2blhwz2p82cfn321yhca0s818c"; depends=[dplyr httr plyr tidyr]; };
-  rscorecard = derive2 { name="rscorecard"; version="0.7.1"; sha256="1j7v383gcb13bi6d1v59pkx6d9g4yichyyh5ads9w82qq6v31xnw"; depends=[dplyr httr jsonlite lazyeval magrittr]; };
+  rscopus = derive2 { name="rscopus"; version="0.6.1"; sha256="1nhpgslwhsz6zpk82fsyqk4qrsw9avq1jv2wbz5ahbfkgd5rshwa"; depends=[dplyr httr plyr tidyr]; };
+  rscorecard = derive2 { name="rscorecard"; version="0.10.0"; sha256="1sls4fnr02kwc1d9myd92am1yzj6mi1pxs694n74amyl4m58kqg9"; depends=[dplyr httr jsonlite lazyeval magrittr tidyselect]; };
   rsdepth = derive2 { name="rsdepth"; version="0.1-5"; sha256="064jbb6gnx0sm41w3sbi6mvsbzsfkjqfici6frk8sfm9ybvm591j"; depends=[]; };
-  rsdmx = derive2 { name="rsdmx"; version="0.5-12"; sha256="0qzbn3d6vkvn8qnjymmjbqgcffglnl5qm2zm4v6694xwcc1msvwx"; depends=[plyr RCurl XML]; };
+  rsdmx = derive2 { name="rsdmx"; version="0.5-13"; sha256="1lgy5nbrl4frfn805lghyx1gl2h8lkvgk07365jyvb8rzfcl43av"; depends=[plyr RCurl XML]; };
   rsed = derive2 { name="rsed"; version="0.1.2"; sha256="1rk7wkidvdn1d39a11cbgglz2dg74bbv3v1ijjdx903kgwg3nnrc"; depends=[Smisc]; };
   rseedcalc = derive2 { name="rseedcalc"; version="1.3"; sha256="18zmpjv6g8f7pmvqlp6khxyys9kdnq5x4zxwb6gwybsh4jxrymkp"; depends=[]; };
   rsem = derive2 { name="rsem"; version="0.4.6"; sha256="16nsbp4s20396h2in0zymbpmsn24gqlbik0vgv86zhy1yg1rz9ia"; depends=[lavaan MASS]; };
   rsgcc = derive2 { name="rsgcc"; version="1.0.6"; sha256="12f8xsg6abmhdgkrrc8sfzmv4i1pycq1g0jfad664d17yciw7rhh"; depends=[biwt cairoDevice fBasics gplots gWidgets gWidgetsRGtk2 minerva parmigene snowfall stringr]; };
   rsggm = derive2 { name="rsggm"; version="0.3"; sha256="17yzvd5vs2avp0nzk7x9bi4d7p6n9nv7675qpgfpwkfqp25lax73"; depends=[glasso MASS Matrix QUIC]; };
   rsimsum = derive2 { name="rsimsum"; version="0.3.3"; sha256="0h08klkdn84y32xlaafig1jj5ni79j4yx2pp3pg2qfmpimxcm44w"; depends=[checkmate ggplot2]; };
-  rsinaica = derive2 { name="rsinaica"; version="0.5.0"; sha256="12jzbay7vm1ziqdjx8i7wkb3f354q95qfayasr3prl16sz80kpp7"; depends=[dplyr httr jsonlite lubridate stringr]; };
+  rsinaica = derive2 { name="rsinaica"; version="0.6.0"; sha256="0ygr2mpvmqnv6a71cm93xss8g3pnmb5ax0fb88cjzax993m2l48v"; depends=[dplyr httr jsonlite lubridate stringr]; };
   rslp = derive2 { name="rslp"; version="0.1.0"; sha256="06glpdsd309058kxww114j9sshvj6gw9g5sdm4zkmzq3cl91fa6h"; depends=[magrittr plyr stringi stringr]; };
   rslurm = derive2 { name="rslurm"; version="0.4.0"; sha256="1ck4ky5d0pf8hnxz1ijbjk0nfyj1hfnhf9la5qrqw2spa09z82ki"; depends=[whisker]; };
-  rsm = derive2 { name="rsm"; version="2.9"; sha256="1rj2qdlv44hbv1ipv7hdpssn90ypp6bfc7nqdaf9dak0bd6khwni"; depends=[estimability]; };
-  rsnps = derive2 { name="rsnps"; version="0.2.0"; sha256="10g1b2i2mp0b4p78iiy83sz2jwz73xfjkhc6ih4ag2wmbdmwf9pb"; depends=[httr jsonlite plyr stringr XML]; };
+  rsm = derive2 { name="rsm"; version="2.10"; sha256="0a6bxrb0qad40lnigqjv2pnwwzcwi1rcmh9gb1a1b00k1n3mnmlc"; depends=[estimability]; };
+  rsnps = derive2 { name="rsnps"; version="0.3.0"; sha256="1ym58gqpvn708228pbkq1klvl60a60bwxwm0arzzad3wh1wansxj"; depends=[crul data_table jsonlite plyr stringr XML xml2]; };
   rsoi = derive2 { name="rsoi"; version="0.3.0"; sha256="0syl90akbbg50pyhsa4nyq2r4psi2n6qg48a4nxprgz412n8rjbv"; depends=[dplyr lubridate readr]; };
-  rsolr = derive2 { name="rsolr"; version="0.0.8"; sha256="1swhg7hnkdphnw0d9jrzn18nk2v5a6ny7n652fh8d0k88a27xx4d"; depends=[BiocGenerics graph RCurl restfulr rjson S4Vectors XML]; };
-  rspa = derive2 { name="rspa"; version="0.2.1"; sha256="0m3h25jxfccdqy4gf3cls4wcdpw580yfmb3lvw4ndfva8lj2q6sy"; depends=[lintools validate]; };
-  rsparkling = derive2 { name="rsparkling"; version="0.2.4"; sha256="0ykk8lvigi3hb5iz7rxsi3brf4ydg2kxmaks4vk0vrkanyifs7xp"; depends=[h2o sparklyr]; };
-  rsq = derive2 { name="rsq"; version="1.0.1"; sha256="1c7604g48rcsbfk66xfwia1jaxlqsjiw19zx9pg51n8d6c0l17zb"; depends=[MASS]; };
+  rsolr = derive2 { name="rsolr"; version="0.0.9"; sha256="1mxvzb7wvm1agv35r82pr1hxa3fimixcwf36j98qjlxj9p7valrw"; depends=[BiocGenerics graph RCurl restfulr rjson S4Vectors XML]; };
+  rspa = derive2 { name="rspa"; version="0.2.3"; sha256="171bwyxbjx2w8fz87jsbaghqxgmmkaxixhia0kp2y33ns6fc1hy9"; depends=[lintools validate]; };
+  rsparkling = derive2 { name="rsparkling"; version="0.2.11"; sha256="150lg0zdpnpcgrh10vh7fr8fmmq6qhvf8pc27fil4rq31k4aazr9"; depends=[h2o sparklyr]; };
+  rsq = derive2 { name="rsq"; version="1.1"; sha256="0pvnyf875jybid16mg1y3dmnlrk1vahckhr5zaai1a0k4i6mh4jf"; depends=[MASS]; };
   rstack = derive2 { name="rstack"; version="1.0.0"; sha256="19vbfmkd6ymadah1y1w5rn52f4hviddccyc6qj2cv5viqwbwws2z"; depends=[R6]; };
   rstackdeque = derive2 { name="rstackdeque"; version="1.1.1"; sha256="0i1qqbfj0yrqbkad8bqc1qlxmyxpn7zycbnq83cdmfbilcmi87ql"; depends=[]; };
-  rstan = derive2 { name="rstan"; version="2.17.3"; sha256="10fdasqbdwlisnm7hjmgl5f027ypfhni86d1c5fykb09g1pvkjz3"; depends=[BH ggplot2 gridExtra inline Rcpp RcppEigen StanHeaders]; };
-  rstanarm = derive2 { name="rstanarm"; version="2.17.4"; sha256="1azggccxj6k8nrz8xlmsv42h0rvwmqfih8xxqn45v7fy9la006p0"; depends=[bayesplot BH ggplot2 lme4 loo Matrix nlme Rcpp RcppEigen rstan rstantools shinystan StanHeaders survival]; };
+  rstan = derive2 { name="rstan"; version="2.18.1"; sha256="01cwm4vrlrrcqmda0dgr23bpav1rbb8xp53n9hl8x70995k4lpcf"; depends=[BH ggplot2 gridExtra inline loo pkgbuild Rcpp RcppEigen StanHeaders]; };
+  rstanarm = derive2 { name="rstanarm"; version="2.18.1"; sha256="08md6kjxrq0cpgjj8jq69jxk21lhdf6arav2griz66mgkydg8xkm"; depends=[bayesplot BH ggplot2 lme4 loo Matrix nlme Rcpp RcppEigen rstan rstantools shinystan StanHeaders survival]; };
   rstansim = derive2 { name="rstansim"; version="0.1.1"; sha256="09hg4ishzp6q90nrl94h21al0ad0jn7fr8brp8f0xa9cvkwlzjpg"; depends=[doRNG doSNOW foreach loo Rcpp rstan]; };
-  rstantools = derive2 { name="rstantools"; version="1.5.0"; sha256="19rzcfiirw539hxs98j33gccwigdpwf3nj1w5jwwzank217wmgg4"; depends=[]; };
+  rstantools = derive2 { name="rstantools"; version="1.5.1"; sha256="11dlrz3mj1j9qigh2qff0ixdcfds4ppxd37112yq8bn16b0idasw"; depends=[]; };
   rstatscn = derive2 { name="rstatscn"; version="1.1.1"; sha256="0aj4x3lyrldpgh90v90qbxylndacn5ri5yqff3qy53q45ar7yji3"; depends=[httr jsonlite]; };
   rstiefel = derive2 { name="rstiefel"; version="0.20"; sha256="1wrl7rc4nrnxjs26l9v36x3mpx33mjijk27nbzidwrhp9gppzz1i"; depends=[]; };
   rstpm2 = derive2 { name="rstpm2"; version="1.4.2"; sha256="19cijqx1jblhgwzr0q1p7aaiajnrf5g9l4fw67p69nv4nljcypan"; depends=[bbmle fastGHQuad mgcv numDeriv Rcpp RcppArmadillo survival]; };
   rstream = derive2 { name="rstream"; version="1.3.5"; sha256="1wprsnwl63cc4a6j5h18r09wlh32bq5z6hj6r5klp7rkpjchsplp"; depends=[]; };
-  rstudioapi = derive2 { name="rstudioapi"; version="0.7"; sha256="133s75q2hr6jg28m1wvs96qrbc9c4vw87migwhkjqb88xxvbqhd5"; depends=[]; };
+  rstudioapi = derive2 { name="rstudioapi"; version="0.8"; sha256="0d6r0in13k0rcyr6asanwy0a9dv4lizq6l2w913rr222pq6vrrck"; depends=[]; };
   rsubgroup = derive2 { name="rsubgroup"; version="0.6"; sha256="1hz8rnbsl97ch6sjwxdicn2sjyn6cajg2zwmfp03idzpb3ixlk7l"; depends=[foreign rJava]; };
   rsunlight = derive2 { name="rsunlight"; version="0.7.0"; sha256="0v2wrgq8fxvkf8sf4z4wi4bbvbskw5wzcplns9imwfmm3y2pabyi"; depends=[crul data_table jsonlite plyr stringr tibble]; };
   rsurface = derive2 { name="rsurface"; version="1.1.0"; sha256="1pymbgvr72nqd66wap5wrcizzx2k9bfr6vkxv6dkvjmi8q7jl2gv"; depends=[plotly rsm]; };
@@ -10837,40 +11313,43 @@ in with self; {
   rsvd = derive2 { name="rsvd"; version="0.9"; sha256="1d71y4r27gpwsaq195yys301va8wdc2bvwxjk6501f7ma2yhl7y9"; depends=[]; };
   rsvg = derive2 { name="rsvg"; version="1.3"; sha256="11mccgf6hfskg45wqc114sx3qy2r494y6axdf73z6xwhs1wpm97g"; depends=[]; };
   rsyslog = derive2 { name="rsyslog"; version="1.0.1"; sha256="1i33bpv894jk7cixsvn85h1g532zj39f8dfqq8cyzgsav9wba2y4"; depends=[]; };
+  rt_test = derive2 { name="rt.test"; version="1.18.7.9"; sha256="0ywkdjvfzmrmmsfkz4jbhwzbzv7wivx80xy8wr92dch1862h6ias"; depends=[]; };
   rt3 = derive2 { name="rt3"; version="0.1.2"; sha256="1fqbymkz4csavkxrs26glzrh0kw3qy9x5smgddgda9a1dxh9ljkm"; depends=[]; };
-  rtable = derive2 { name="rtable"; version="0.1.5"; sha256="1a9x0qcbp96wg86nbvx25yh5viwvf5sqb41z3cvr5i7br2ji8n5i"; depends=[knitr ReporteRs shiny tidyr xtable]; };
   rtape = derive2 { name="rtape"; version="2.2"; sha256="0q7rs7pc1k1kayr734lvh367j5qig2nnq5mgak1wbpimhl7z3wm7"; depends=[]; };
-  rtdists = derive2 { name="rtdists"; version="0.8-3"; sha256="1p8j50snlfc4rs7fvzd2ny1i47vy3d6xmik4rhyppvv4kr47nwhm"; depends=[evd gsl msm Rcpp]; };
+  rtdists = derive2 { name="rtdists"; version="0.9-0"; sha256="14ccpn67xdsx5fhwiw32z55gldzdcpaparqb1zpls2r233wg0v99"; depends=[evd gsl msm Rcpp]; };
   rtematres = derive2 { name="rtematres"; version="0.2"; sha256="1d0vrprvnlk4hl2dbc6px9xn9kx9d1qvlqxd798hzda6qg5wwvf2"; depends=[gdata plyr RCurl XML]; };
   rtext = derive2 { name="rtext"; version="0.1.20"; sha256="0455rwfxmpgb4qb925ildqr4km4ndgqjxgvk90x2dhfivgmmn60k"; depends=[digest hellno magrittr R6 Rcpp RSQLite stringb]; };
   rtf = derive2 { name="rtf"; version="0.4-13"; sha256="1gwvw98lnym305z9awjaximrmkl4kkki59blbwqs2js42iqcx2m3"; depends=[R_methodsS3 R_oo]; };
   rtfbs = derive2 { name="rtfbs"; version="0.3.9"; sha256="02irj6c7nfgp42yb5zdmhbr5pi09xgx0z76d1ccfczjf0r1cyvfz"; depends=[rphast]; };
-  rticles = derive2 { name="rticles"; version="0.4.1"; sha256="1f2a60jmlsiga377ihhy8sm9amqn7fd91sd4vx682b97hfh3zn39"; depends=[knitr rmarkdown yaml]; };
-  rtide = derive2 { name="rtide"; version="0.0.4"; sha256="0i3mf3818s62mmn315brv2axpwiiz646k5hv8z26z7s4ahxavrc0"; depends=[abind datacheckr lubridate magrittr plyr stringr tibble tidyr]; };
+  rticles = derive2 { name="rticles"; version="0.6"; sha256="1rdjk5h9li55j3r7pj7q82z2y4phxqwybr3375dyajymd370gsys"; depends=[knitr rmarkdown tinytex xfun yaml]; };
+  rtide = derive2 { name="rtide"; version="0.0.5"; sha256="0ns79xkkl141bbns8zlvx3gf48k4a03qa21pjyhnhgkm9lsihwfc"; depends=[abind checkr lubridate]; };
   rtiff = derive2 { name="rtiff"; version="1.4.5"; sha256="0wpjp8qwfiv1yyirf2zj0696zb7m7fpzn953ii8vbmgzhakgr8kw"; depends=[pixmap]; };
-  rtika = derive2 { name="rtika"; version="0.1.8"; sha256="1lkcrs3cdfcgy86vbvjfxqs2jxw4imz16s6c3pxhdl8r0byjdndk"; depends=[curl rappdirs sys]; };
+  rtika = derive2 { name="rtika"; version="1.1.19"; sha256="0qh6qq3hxhsa2nb3bn468h87k54xjq8f0jj5rixcp95p4krr6wn7"; depends=[curl digest rappdirs sys]; };
   rtimes = derive2 { name="rtimes"; version="0.5.0"; sha256="1z8iaxkvd99fnk46vzbw6lax2qayng6s5n1sxn78kvp8py552f61"; depends=[crul data_table dplyr jsonlite tibble]; };
   rtimicropem = derive2 { name="rtimicropem"; version="1.3"; sha256="1z7nrmzwdgz7fy2i23rl07jd39sdxqsdmmmkaaxzagj7whd58inj"; depends=[changepoint dplyr ggplot2 knitr lazyeval lubridate pathological R6 rbokeh readr stringr tibble tidyr]; };
   rtip = derive2 { name="rtip"; version="1.1.1"; sha256="0lfny8nvgnf90xsmgmr32nzjbw8117m4vw7d0bc3xm4pzpnymjdq"; depends=[boot ggplot2 mvtnorm plyr rootSolve]; };
   rtk = derive2 { name="rtk"; version="0.2.5.4"; sha256="1nh757l4ih5pmmh7b84ca1f5wpz9mcksdb0a4rvs2hhgap38ihg9"; depends=[Rcpp]; };
-  rtkore = derive2 { name="rtkore"; version="1.5.1"; sha256="03vmgrsil5yrrs3ndgqvfcwv9plcawc8v2y2x9nwcashxg40djn6"; depends=[Rcpp]; };
+  rtkore = derive2 { name="rtkore"; version="1.5.5"; sha256="0srk0ih4gbmhb1pl6zf8sjwrkdmgws9cl1397fcqv6l3bc376622"; depends=[inline Rcpp]; };
   rtop = derive2 { name="rtop"; version="0.5-14"; sha256="1wwllckginnzisapbklpsizy47db24r83xahq4qsd8zhqvv9yj33"; depends=[gstat sp]; };
   rtrek = derive2 { name="rtrek"; version="0.1.0"; sha256="05dzqylvv8rgh0sxl2qa2zvxnmilwmxsa6f99mh6ygcf9pal8jzd"; depends=[dplyr jsonlite magrittr purrr]; };
   rtrends = derive2 { name="rtrends"; version="0.1.0"; sha256="04xdggf36m294drb9z8khdjr6fgsg4bwkb4mmbbvqfzjpq4mq4y1"; depends=[dplyr lubridate tidyr]; };
-  rtrim = derive2 { name="rtrim"; version="2.0.4"; sha256="1xl3xai768idnfc30hp20cnpq3a07049p7vpkqpdrpla6a8zhvqk"; depends=[]; };
-  rts = derive2 { name="rts"; version="1.0-45"; sha256="11gvgj5bqiacsf51sg4dj7jpsjgdj6j26vqc8by15325a4c804ml"; depends=[raster RCurl sp xts zoo]; };
+  rtrim = derive2 { name="rtrim"; version="2.0.6"; sha256="18fvi8zbf9dqwi5x0sgy2aay5565ldvqpispqqb5gx2lwb9qra2r"; depends=[]; };
+  rts = derive2 { name="rts"; version="1.0-47"; sha256="0xlwg6c49clb1zyfw8s8qhwdbyl0rwx7ljy8j2rq7hjh07541hdx"; depends=[raster RCurl sp xts zoo]; };
+  rtsdata = derive2 { name="rtsdata"; version="0.1.1"; sha256="1xh5wsc330x49zcid8hpv9jarbp64dgq10k6lbjjsx1n7dg9qm3z"; depends=[alfred anytime curl data_table mongolite Quandl quantmod xts zoo]; };
   rtson = derive2 { name="rtson"; version="1.3"; sha256="1gwvk7nmq9bz90jy1zh7lhr735iw804pmwxykdpaigcsnxk7zx03"; depends=[R6]; };
-  rtsplot = derive2 { name="rtsplot"; version="0.1.0"; sha256="1iz7m1r46d1b84fbbkby42ry8plp226gh38krrdgzshfcf2a6856"; depends=[quantmod RColorBrewer TTR xts zoo]; };
-  rtweet = derive2 { name="rtweet"; version="0.6.7"; sha256="0blyggy559cginfavmwzli1ibjbh1lbipyyi4bs2h9mvx9iwkl2l"; depends=[httr jsonlite magrittr tibble]; };
+  rtsplot = derive2 { name="rtsplot"; version="0.1.1"; sha256="0dkv8pl2937zfpcwyy9ms1ak29nv9mxyb8w6bh2ns8figjp11zmp"; depends=[quantmod RColorBrewer xts zoo]; };
+  rtweet = derive2 { name="rtweet"; version="0.6.8"; sha256="0r2lyiy3wa7v7wq72fvckw3bbff9sjy5bqpag766pl1rwfsbphjm"; depends=[httr jsonlite magrittr tibble]; };
   rtype = derive2 { name="rtype"; version="0.1-1"; sha256="0wjf359w7gb1nrhbxknzg7qdys0hdn6alv07rd9wm6zynnn1vwxy"; depends=[]; };
-  rtypeform = derive2 { name="rtypeform"; version="0.3.3"; sha256="13nqlgi4wwby8ka014ggilnh2m4qr940zbsks27zfd7q56ng7sbq"; depends=[httr jsonlite purrr tibble]; };
+  rtypeform = derive2 { name="rtypeform"; version="2.0.0"; sha256="00as49l9plncc25bn93x36hpxnxachsh382ivhq6k9d9gi8424c0"; depends=[dplyr glue httr jsonlite lubridate purrr tibble tidyr]; };
   rubias = derive2 { name="rubias"; version="0.1.0"; sha256="0k8f1aaj3zpxqkhzjfl7iyyx7pjssp5lldajjsghw110j75qksh4"; depends=[dplyr ggplot2 gtools magrittr Rcpp readr rlang stringr tibble tidyr]; };
   rucm = derive2 { name="rucm"; version="0.6"; sha256="1n6axmxss08f2jf5impvyamyhpbha13lvrk7pplxl0mrrrl5g0n8"; depends=[KFAS]; };
   rucrdtw = derive2 { name="rucrdtw"; version="0.1.3"; sha256="0wbh9zbgqf5bk1ix5qry18lhgdqk90pn5xnv401268gldjy4z777"; depends=[Rcpp]; };
   rugarch = derive2 { name="rugarch"; version="1.4-0"; sha256="0b0rq88v93945g7pr6xin7wfdm8zl2vw8hxwa2kfak4xnrrprsyy"; depends=[chron expm ks nloptr numDeriv Rcpp RcppArmadillo Rsolnp SkewHyperbolic spd xts zoo]; };
+  ruin = derive2 { name="ruin"; version="0.1.1"; sha256="124xs1c2mjfy6z0bp83rwkqw2y73g77xwn3q4yd2xw0v2frnpvpz"; depends=[ggplot2]; };
   ruler = derive2 { name="ruler"; version="0.1.3"; sha256="000hnnnz3zccpshpi725f67kbfr3hnpgr48zyz24pbynyz3d7vap"; depends=[dplyr keyholder rlang tidyr]; };
   runittotestthat = derive2 { name="runittotestthat"; version="0.0-2"; sha256="15zdcvqkr5ivq6wk6dw8k6diginc6z7mdc18pswim90d99j2g9sm"; depends=[assertive RUnit]; };
   runjags = derive2 { name="runjags"; version="2.0.4-2"; sha256="035sxmh0b0m6dwz8qbpsmw2p7ihkx3cxgkhj27i0j6dsjryl3x4p"; depends=[coda lattice]; };
+  runner = derive2 { name="runner"; version="0.1.0"; sha256="0gzh8438pvpg5wwirh0hn5s8fnd8cb6y66syndxarr06v9jy1gza"; depends=[Rcpp]; };
   rusda = derive2 { name="rusda"; version="1.0.8"; sha256="0xx72jjf1pyixwpnvvgx5n2vc5gl46bam1caav043iqki68wb338"; depends=[foreach httr plyr RCurl stringr taxize testthat XML]; };
   rusk = derive2 { name="rusk"; version="0.1.1"; sha256="0a6vbcnfzlfq9fmibiy0cwcfix65qhxq4f7wc7d53riga82s00lk"; depends=[dplyr ggforce ggplot2 reshape2 shiny tidyr]; };
   rust = derive2 { name="rust"; version="1.3.5"; sha256="16jrf1nfn3wnkrbzp5bjkqi0q0vpy82ra6f0vs1pyk5hw5jhshg9"; depends=[Rcpp RcppArmadillo spatstat]; };
@@ -10879,15 +11358,17 @@ in with self; {
   rvHPDT = derive2 { name="rvHPDT"; version="3.0"; sha256="05nrfnyvb8ar7k2bmn227rn20w1yzkp1smwi4sysc00hyjrlyg8s"; depends=[gtools]; };
   rvTDT = derive2 { name="rvTDT"; version="1.0"; sha256="09c2fbqnlwkhaxfmgpsdprl0bb447ajk9xl7qdlda201fvxkdc8v"; depends=[CompQuadForm]; };
   rvalues = derive2 { name="rvalues"; version="0.6.3"; sha256="1bsdvwcijb75f27c8padjx8663as667axc4skwa6xgv5y423kbd0"; depends=[]; };
-  rvcheck = derive2 { name="rvcheck"; version="0.1.0"; sha256="0b3vw1r4aglciwmjqm8dvlizydydwcgnpwkzib2g9k69a355iyi0"; depends=[]; };
+  rvcheck = derive2 { name="rvcheck"; version="0.1.1"; sha256="116cs1ih5m55jyp0f5whjvnbn4gpi4550qkbwzw0mq254x2r8vdg"; depends=[rlang]; };
   rversions = derive2 { name="rversions"; version="1.0.3"; sha256="0i2gi05nrvknr7g89rbppkswyfcwwd4r9gp75fdfhpah8sgq1l11"; depends=[curl xml2]; };
   rvertnet = derive2 { name="rvertnet"; version="0.7.0"; sha256="01z3ij5z21v901hz4l9173r4pa9jz2nl7bx086ka1bxvcy0dgqgj"; depends=[crul dplyr ggplot2 jsonlite maps]; };
   rvest = derive2 { name="rvest"; version="0.3.2"; sha256="04mv99z8dixywx96kfy4215g6ib23s7qvd77hcf9pxqxzcvqhvhd"; depends=[httr magrittr selectr xml2]; };
   rvg = derive2 { name="rvg"; version="0.1.9"; sha256="0r2amwygazq1sff8fl0k618fxs2d5pxp5ryz7kqyjkcnxfghgnxf"; depends=[gdtools officer Rcpp xml2]; };
   rvgtest = derive2 { name="rvgtest"; version="0.7.4"; sha256="1lhha5nh8fk42pckg4ziha8sa6g20m0l4p078pjj51kz0k8929ng"; depends=[]; };
-  rvinecopulib = derive2 { name="rvinecopulib"; version="0.2.8.1.0"; sha256="0n92822pgspq17wy52zmvch2ag9fc577y64myzg5b7hz7fqd96mq"; depends=[assertthat BH cctools kde1d lattice Rcpp RcppEigen RcppThread]; };
-  rwalkr = derive2 { name="rwalkr"; version="0.3.3"; sha256="03kpv4hvlajm09cqrlihia62pcj1skakx28ci4mgbfgpjy6l4jsl"; depends=[dplyr httr tibble tidyr]; };
+  rviewgraph = derive2 { name="rviewgraph"; version="1.2"; sha256="0qw1fdfwg2763a1k1qmryblw5rpagsi5p70rs7fj256zfcjvwrz8"; depends=[rJava]; };
+  rvinecopulib = derive2 { name="rvinecopulib"; version="0.3.0.1.1"; sha256="09zs1ckc5c0z4xg6h348v8nig37b400mkwsa0z4hn7rrhjf5i3gf"; depends=[assertthat BH cctools kde1d lattice Rcpp RcppEigen RcppThread wdm]; };
+  rwalkr = derive2 { name="rwalkr"; version="0.3.4"; sha256="1zx58l92finzkrivp214hbldkcbpdjgx0k6bwz22spp0lgnzi9mp"; depends=[dplyr httr tibble tidyr]; };
   rwars = derive2 { name="rwars"; version="1.0.0"; sha256="0kmwpr6gn3xsf0pqx153vblpjbhc34mzlgyv8xb2nw78nf8znfij"; depends=[httr]; };
+  rwavelet = derive2 { name="rwavelet"; version="0.1.0"; sha256="15shy8v659r3qnx32hrq6zn5fwinwg6aiys71f45k0s9jhj973ki"; depends=[dplyr signal]; };
   rwc = derive2 { name="rwc"; version="1.11"; sha256="1qhgkbkp4nz0wq5c4x8232xiszpiyzcdklfgvpnx4cbp3bbfdi4g"; depends=[MASS Matrix mvtnorm raster]; };
   rwfec = derive2 { name="rwfec"; version="0.2"; sha256="0wmalfms59zi8jdn2s2qbcdckfkifl9vg19hzx4389mm5gk6qsbh"; depends=[Rcpp]; };
   rworldmap = derive2 { name="rworldmap"; version="1.3-6"; sha256="1q1h0n9qr0m5pdx10swrh9ddsvdj8kv5nqngrf3lnx9rg9iwivjk"; depends=[fields maptools sp]; };
@@ -10897,9 +11378,11 @@ in with self; {
   rwunderground = derive2 { name="rwunderground"; version="0.1.8"; sha256="02p26gkicd5v511kb04p1h3wxj57r7j5vr97n3ibywc6ivz7nqxa"; depends=[countrycode dplyr httr lubridate tibble]; };
   rxSeq = derive2 { name="rxSeq"; version="0.99.3"; sha256="0g0n2pzbssz61psghjp1vrlspgph4s39x1k1zhcz7ivdn5pjb2nx"; depends=[MASS numDeriv VGAM]; };
   rxylib = derive2 { name="rxylib"; version="0.2.1"; sha256="0qfdd7z9as6igc82i8dbvjz03jk8scxz599jw8xm69y5qs5zf104"; depends=[BH Rcpp]; };
+  rym = derive2 { name="rym"; version="0.4.0"; sha256="1vxc6nk0d90ggwymdyfwaxzsd91zmd3bspz0chj7iaki8cjbbjdw"; depends=[httr stringr]; };
   ryouready = derive2 { name="ryouready"; version="0.4"; sha256="1d9z3paxcrkwsgn5g83x57jwz2iqarks30x0bwg48i5ispw6xbr3"; depends=[car ggplot2 stringr]; };
   rysgran = derive2 { name="rysgran"; version="2.1.0"; sha256="1l2mx297iyipap8cw2wcw5gm7jq4076bf4gvgvij4q35vp62m85z"; depends=[lattice soiltexture]; };
-  rzmq = derive2 { name="rzmq"; version="0.9.3"; sha256="04rb54gr1wr0nczxnhk5jbk9ar65yn2vs8bsa41i1hfhzjhnsvxb"; depends=[]; };
+  rzeit2 = derive2 { name="rzeit2"; version="0.2.0"; sha256="0r74i14bnpw1dp8vzcx8kf87a8v4g3r4wbs4c87s9s4ingvsbl64"; depends=[anytime httr jsonlite openssl rvest stringr xml2]; };
+  rzmq = derive2 { name="rzmq"; version="0.9.4"; sha256="1bbkgxqpjmy3ma76cc9kjxhhwi632di4mfarlgxi2g42dmsxmyq3"; depends=[]; };
   s2 = derive2 { name="s2"; version="0.4-0"; sha256="1mpivllq3r3kn7msb7qn9h8fr31jl5cvfg1pdq1wi69k4bznd8y0"; depends=[Rcpp]; };
   s20x = derive2 { name="s20x"; version="3.1-27"; sha256="021f9l34svx42mnzi080rr44sxz9zjvcnxljakcag02r4hl52pcp"; depends=[]; };
   s2dverification = derive2 { name="s2dverification"; version="2.8.0"; sha256="13cjzxrjwahjhdw5q8lpbwgywgswqrcnj7rkff9kraan9lj83bkk"; depends=[abind bigmemory GEOmap geomapdata mapproj maps NbClust ncdf4 plyr SpecsVerification]; };
@@ -10915,9 +11398,9 @@ in with self; {
   sRDA = derive2 { name="sRDA"; version="1.0.0"; sha256="0g11smn4adm3b79m9w7wzcragxggkf8rrrsgj2yzdhm1d7zzjwbk"; depends=[doParallel elasticnet foreach Matrix mvtnorm]; };
   sROC = derive2 { name="sROC"; version="0.1-2"; sha256="0cp6frhk9ndffb454dqp8fzjrla76dbz0mn4y8zz1nbq1jzmz0d3"; depends=[]; };
   sSDR = derive2 { name="sSDR"; version="1.2.0"; sha256="1fqsglqzsbzdvcdnwwf7mg6x20zfpw66x63r6avac3w1pz3n7kvx"; depends=[MASS Matrix]; };
-  sValues = derive2 { name="sValues"; version="0.1.5"; sha256="0y234nci9pnc10xyiwxllvb5b48ajga2y0k5fv9izlwkbc5wpiaw"; depends=[caTools ggplot2 reshape2]; };
+  sValues = derive2 { name="sValues"; version="0.1.6"; sha256="0830f4w6jgpiysk0vz0bxaxwa8m3k94fgj9l3qb42r3jjf9cdn29"; depends=[ggplot2 reshape2]; };
   saasCNV = derive2 { name="saasCNV"; version="0.3.4"; sha256="12h5vrl55sb4wmx0hzib5iax8p0q2qzk19h15r0asfkh9l7qz94l"; depends=[DNAcopy RANN]; };
-  sabre = derive2 { name="sabre"; version="0.2.0"; sha256="1mcjchw1hw1ry5vkl50jrz4bm82b4fqzhgn2xp2kdzwsgvq61dbm"; depends=[dplyr entropy rlang sf tibble tidyr]; };
+  sabre = derive2 { name="sabre"; version="0.2.1"; sha256="0zfw3mb21p48xjjwvz7p5q5ckh1sk17rymkkhln97jjfy5q1zwz8"; depends=[dplyr entropy rlang sf tibble tidyr]; };
   sac = derive2 { name="sac"; version="1.0.1"; sha256="1rl5ayhg5y84fw9w3zf43dijjlw9x0g0w2z4haw5xmxfni72ms8w"; depends=[]; };
   saccades = derive2 { name="saccades"; version="0.1-1"; sha256="138a6g3hjmcyvflpxx1lhgxnb8svrynplrjnvzij7c4bzkp8zip6"; depends=[zoom]; };
   sadists = derive2 { name="sadists"; version="0.2.3"; sha256="17jlzx5h5l1w7riz0rs99w31n6lxnnxwzbzqn2z5r292j2nxvmkw"; depends=[hypergeo orthopolynom PDQutils]; };
@@ -10926,33 +11409,36 @@ in with self; {
   sae2 = derive2 { name="sae2"; version="0.1-1"; sha256="0fbbh2s0gjhyhypaccnd37b5g2rhyzq7mrm6s0z36ldg1pzi4dd9"; depends=[MASS]; };
   saeRobust = derive2 { name="saeRobust"; version="0.2.0"; sha256="1bdfrsm59xwkga0kxl3r5n83mhhkyzj7gplrgx26gyflashyd1zc"; depends=[aoos assertthat ggplot2 magrittr MASS Matrix memoise modules pbapply Rcpp RcppArmadillo spdep]; };
   saeSim = derive2 { name="saeSim"; version="0.9.0"; sha256="19l41qpwspccphmgxi20p7f473lxxh8d86b0wyy5jq24phhd8awx"; depends=[dplyr functional ggplot2 MASS parallelMap spdep]; };
+  saemix = derive2 { name="saemix"; version="2.2"; sha256="1gp9xww9q3cq9dr6nifp4wlyg9gmamab845py1ag07vnr2gfwx5c"; depends=[]; };
   saery = derive2 { name="saery"; version="1.0"; sha256="09x1v627llqbpiwkh1wr0z7gsndfdrjzag2hprhq1adbzh05k47z"; depends=[]; };
   safeBinaryRegression = derive2 { name="safeBinaryRegression"; version="0.1-3"; sha256="1g68r6pp5l41rbgyfqgcha1gpsisnl0ybdmdqr4ylr43f61dpgvd"; depends=[lpSolveAPI]; };
-  safer = derive2 { name="safer"; version="0.2.0"; sha256="0659xn8jzd5md2mm71p4036ljrfvlhkfshsgidx7l2k9ig532059"; depends=[assertthat base64enc sodium]; };
+  safer = derive2 { name="safer"; version="0.2.1"; sha256="1lmhaj9y0hi4ybxfkllxl99vsagcg73sy4kkcmlvn3bs69jky1r9"; depends=[assertthat base64enc sodium]; };
   salesforcer = derive2 { name="salesforcer"; version="0.1.2"; sha256="02a4xzwphy5zfkd0qza6cm2n7dpf71bmc6r78gj17w4amrp3k5y5"; depends=[dplyr httr jsonlite lubridate purrr readr XML xml2]; };
+  salty = derive2 { name="salty"; version="0.1.0"; sha256="1dxq62yrkv416fy09l03slc7ci6mnwiyvjlsxhbqnj8yjy3kbhr6"; depends=[assertthat purrr stringr]; };
   sambia = derive2 { name="sambia"; version="0.1.0"; sha256="15yz5lrjav5bs8m52crg3l43xmi4gf7wydji76p181ssyg43z2ln"; depends=[dplyr e1071 FNN mvtnorm pROC ranger smotefamily]; };
   samon = derive2 { name="samon"; version="4.0.0"; sha256="0pvv93ahh0i69ncc3sic9481wd5rv5dfxysxyzkl61ds3yvrr09v"; depends=[]; };
   sampSurf = derive2 { name="sampSurf"; version="0.7-4"; sha256="0azs8d1d4cp5vzrlzpn2lbqmbha6rxq109apg6hr2hf7i81g19d7"; depends=[boot lattice latticeExtra raster rasterVis sp]; };
   sampleSelection = derive2 { name="sampleSelection"; version="1.2-0"; sha256="1s3p5fvvxkjkm6vjpxi3rw8ncbmyvqpfb0gghcvf2sspdyzam1s2"; depends=[Formula maxLik miscTools mvtnorm systemfit VGAM]; };
-  sampler = derive2 { name="sampler"; version="0.2.0"; sha256="00c5blf8gfsj8ksf3jwksg3pkh7m39mk23r8v9lkqcp1y91z5p0i"; depends=[dplyr reshape splitstackshape tidyr]; };
+  sampler = derive2 { name="sampler"; version="0.2.2"; sha256="02dk16hywmdrhaqf18dis7canq433wm7pn0haq10h49qav16kj55"; depends=[dplyr purrr reshape tidyr]; };
   samplesize = derive2 { name="samplesize"; version="0.2-4"; sha256="0n6z7jmf665lbj3g1mjy87a9fh53z85546bhrkmkgsysb0r9q6iq"; depends=[]; };
-  samplesize4surveys = derive2 { name="samplesize4surveys"; version="3.1.2.400"; sha256="16q8pird6ic7001i3gkwqb2rlak9l853bf2m1y9njmdprsjs82yl"; depends=[TeachingSampling timeDate]; };
+  samplesize4surveys = derive2 { name="samplesize4surveys"; version="3.6.1.0"; sha256="0qkzhqr67x5rkahbyr5j2nksf0l0jwxsdl19p5gfx7j5kqzlifwq"; depends=[TeachingSampling timeDate]; };
   samplesizeCMH = derive2 { name="samplesizeCMH"; version="0.0.0"; sha256="0gdywqmylid4fkz5syzf1wgcan71whhm9gjylmsg4p05hlwvpv1d"; depends=[]; };
   samplesizelogisticcasecontrol = derive2 { name="samplesizelogisticcasecontrol"; version="0.0.6"; sha256="1xznql86r6snkkmk9g05jhdam06pr0qmg40mdzasl291nc50v5aa"; depends=[mvtnorm]; };
   sampling = derive2 { name="sampling"; version="2.8"; sha256="06pj7dan0mknpsblmlnk7am78qrnwgnql5vvx7vmbfvib7rj6s9m"; depends=[lpSolve MASS]; };
   samplingDataCRT = derive2 { name="samplingDataCRT"; version="1.0"; sha256="0ah3fi2sn642c8nicikhjhl1hdsjzshrf1j02swq0jaqggcqjdvk"; depends=[mvtnorm]; };
   samplingEstimates = derive2 { name="samplingEstimates"; version="0.1-3"; sha256="1srdchlpxksfdqhf5qdvl7nz0qsxkxww7hzqj0q71asbzlq3am3p"; depends=[samplingVarEst]; };
-  samplingVarEst = derive2 { name="samplingVarEst"; version="1.1"; sha256="1ffdw7s3jf5xfcbiqbrk4f3d0ym1s690wlc24yvhp5fvh5rghjn3"; depends=[]; };
+  samplingVarEst = derive2 { name="samplingVarEst"; version="1.3"; sha256="031iwgiw7dcncw1smxidn3kyvl0n06j5ag4pbhnicfqpj0pnx3l3"; depends=[]; };
   samplingbook = derive2 { name="samplingbook"; version="1.2.2"; sha256="1szx9bdlxxn2yhy9i362fcscn5cydvrkw9kggr7yqb715k5n1j6n"; depends=[pps sampling survey]; };
-  samr = derive2 { name="samr"; version="2.0"; sha256="0rsfca07pvmhfn7b49yk2ycw00wsq6dmrpv9haxz8q0xv7n5n2q9"; depends=[impute matrixStats]; };
+  samr = derive2 { name="samr"; version="3.0"; sha256="01km0f7qgm73x19vbvsxl083hs1dq4dj8qm5h64cxbf20b08my15"; depends=[GSA impute matrixStats openxlsx shiny shinyFiles]; };
   sand = derive2 { name="sand"; version="1.0.3"; sha256="0h7djria9v75gqcygjcfznpchqgxjqc6b43arvq9ni1xjrq8sszf"; depends=[igraph igraphdata]; };
-  sandwich = derive2 { name="sandwich"; version="2.4-0"; sha256="1h6c12cfv2x42laxf6ifxfk9hqzagvvvimzak88fv8vnxnf5nc9l"; depends=[zoo]; };
+  sandwich = derive2 { name="sandwich"; version="2.5-0"; sha256="168kq5kk34xbhfsxsanard9zriyp6cw0s09ralzb57kk42pl9hbc"; depends=[zoo]; };
   sanitizers = derive2 { name="sanitizers"; version="0.1.0"; sha256="1c1831fnv1nzpq8nw9krgf9fm8v54w0gvcn4443b6jghnnbhn2n6"; depends=[]; };
   sankey = derive2 { name="sankey"; version="1.0.2"; sha256="0jvcr2bn69aklfbgj4hbsrc047mymrx0jmsg26m0g6w7n1igqvcw"; depends=[simplegraph]; };
   sanon = derive2 { name="sanon"; version="1.5"; sha256="1iikm7ivlz87kbq0ax9r1dz29zdq1kmhxd2imzc4hkvr1rwgciv6"; depends=[]; };
   santaR = derive2 { name="santaR"; version="1.0"; sha256="10g4z951mpxw9d21s5f6zwfch5xs9vx812fb0wyrbw9s8drmlbkh"; depends=[doParallel foreach ggplot2 gridExtra iterators pcaMethods plyr reshape2 shiny shinythemes]; };
   sapa = derive2 { name="sapa"; version="2.0-2"; sha256="056xlh14dnzq4x7sbp7ff2k61jxy7110a742b502vz549qfrr5ds"; depends=[ifultools splus2R]; };
-  sarima = derive2 { name="sarima"; version="0.5-2"; sha256="00xlfd8hrplxn66k2nfc7ivyacrr6rqgsv9ylsjynibpidvkkn17"; depends=[FitAR FitARMA lagged ltsa PolynomF portes Rdpack]; };
+  sarima = derive2 { name="sarima"; version="0.7.6"; sha256="1x0qxvq2sax8c2x3max4ghhdrxcyji92vdz4bg5jkpakrn4ilm8a"; depends=[FitAR FitARMA Formula KFAS lagged ltsa numDeriv PolynomF Rcpp RcppArmadillo Rdpack]; };
+  sars = derive2 { name="sars"; version="1.0.0"; sha256="055h2sldx0yiqipk5rpxpskh7hz2d5qjvylv72rwq7s76jbnyqnn"; depends=[cli crayon dplyr nortest numDeriv]; };
   sas7bdat = derive2 { name="sas7bdat"; version="0.5"; sha256="0qxlapb6wdhzpwlmzlhscy3av7va3h6gkzsppn4sx5q960310an3"; depends=[]; };
   sasMap = derive2 { name="sasMap"; version="1.0.0"; sha256="11vhhxhakqm1gsb3p4s4966sapmrqfyw79zfppbx5lnqi3xr0ngn"; depends=[readr stringi stringr]; };
   satellite = derive2 { name="satellite"; version="1.0.1"; sha256="1g8zzlsdvb56l2jph7i5wjgbpyx5dkwa3nv8mzmg0qyh3zd9pyi0"; depends=[plyr raster Rcpp]; };
@@ -10960,31 +11446,36 @@ in with self; {
   saturnin = derive2 { name="saturnin"; version="1.1.1"; sha256="0cjp4h1s9ivn17v8ar48mxflaj9vgv92c8p9l2k5bc9yqx9mcs36"; depends=[Rcpp RcppEigen]; };
   saves = derive2 { name="saves"; version="0.5"; sha256="1b4mfi2851bwcp0frx079h5yl6y1bhc2s8ziigmr8kwy1y1cxw10"; depends=[]; };
   saws = derive2 { name="saws"; version="0.9-6.1"; sha256="0w40j6xczqs74z1z3na4510w06px7yn55s2mw9mddd6736l56fv1"; depends=[gee]; };
+  sazedR = derive2 { name="sazedR"; version="1.0.0"; sha256="1cpc27rla0wn19fjxr0rflmmd4f1rh5phprny39abwx81nqx8s2p"; depends=[bspec fftwtools forecast pracma signal zoo]; };
   sbart = derive2 { name="sbart"; version="0.1.1"; sha256="0552dbdj7rm1h7dbl34m4r4disra6x3p919d9c4719ks88i78255"; depends=[LaplacesDemon msm Rcpp]; };
   sbfc = derive2 { name="sbfc"; version="1.0.1"; sha256="1xz8h1m5d5ahrz4wsy55amd5mxh3acjs5qmcn7gl6yh3pn0c8phf"; depends=[DiagrammeR discretization Matrix Rcpp RcppArmadillo]; };
   sbgcop = derive2 { name="sbgcop"; version="0.980"; sha256="0vmg8b4462qghlyx6hq0raf9xqvygzgwi5y0cbqcljhmbmqjrwxs"; depends=[]; };
   sbioPN = derive2 { name="sbioPN"; version="1.1.0"; sha256="0yvg55xnkhm35hfl7rldy2grb26hm4a68jr4x9n45fs7hhdylxri"; depends=[]; };
+  sbl = derive2 { name="sbl"; version="0.1.0"; sha256="1wxzscii0kp55sngmjccrqvc8zm1zamfh406r12irrz2wbxwqnkw"; depends=[]; };
   sbmSDP = derive2 { name="sbmSDP"; version="0.2"; sha256="1sl46lqi6w0s7ghv4bywhic56cm2vib3kawprga760m6igargx4y"; depends=[Rcpp RcppArmadillo]; };
+  sboost = derive2 { name="sboost"; version="0.1.0"; sha256="1pnl64yyppffi730rp230cfhwfnpzn7s8dcii3k0m9in3z31j002"; depends=[dplyr Rcpp rlang]; };
   sbpiper = derive2 { name="sbpiper"; version="1.9.0"; sha256="0pjq88ixk494wlz4nh5anbsn59mmh9wg564qh3vzwwqgxf1k61cg"; depends=[colorRamps data_table factoextra FactoMineR ggplot2 Hmisc reshape2 scales stringr]; };
   sbrl = derive2 { name="sbrl"; version="1.2"; sha256="1d0f2mlzzcghhvqagrr954qa69b5v47milw3iazxihh8q1qlird2"; depends=[arules Rcpp]; };
   sbtools = derive2 { name="sbtools"; version="1.1.6"; sha256="1wvd7xbkfyx88bi1vz30c6jb20fgsrcgpvkw4g4ym0966vhv1ca1"; depends=[curl httr jsonlite stringr]; };
+  scBio = derive2 { name="scBio"; version="0.1.2"; sha256="01yqfqddgak0iaysphsf08mbkqbgbpr0gsyvkj3hpyj7kk1937h4"; depends=[doSNOW fields foreach LiblineaR limma raster sp]; };
+  scPDSI = derive2 { name="scPDSI"; version="0.1.0"; sha256="1p5hrahklm85hawssp223hc1binyhz3fadd9qkr7hw3a47yn9cc5"; depends=[Rcpp]; };
   scRNAtools = derive2 { name="scRNAtools"; version="1.0"; sha256="0x0lniqhq6q87y08kkkyvmk1g5b8i73hm3h86ba8rcv0v0n7ap9a"; depends=[ALL ConsensusClusterPlus corrplot edgeR foreach ggplot2 ggthemes Hmisc igraph lattice limma PerformanceAnalytics plyr reshape2 Rmisc Rtsne scatterplot3d survival TPEA]; };
   scaRabee = derive2 { name="scaRabee"; version="1.1-3"; sha256="1yap3hi36f8hk93jn59nxrbgq8iw0xwkkm3pc2gb50cpcpaq41pd"; depends=[deSolve lattice neldermead]; };
   scagnostics = derive2 { name="scagnostics"; version="0.2-4.1"; sha256="1azg1xlid63l9mcyns9yyl3a3hykbl0sl0h5jhyvzjzahfyanq53"; depends=[rJava]; };
   scaleboot = derive2 { name="scaleboot"; version="0.3-4"; sha256="16shdj4b8pbdbphqzw7r5xzx6k2qfkr729inv21gkp9qcp4h0vrm"; depends=[mvtnorm pvclust]; };
-  scales = derive2 { name="scales"; version="0.5.0"; sha256="0zg9wfzmsdjxpbld0nzv7hcpq5r0wazqxmn7grvvif2agj0w1z6v"; depends=[dichromat labeling munsell plyr R6 RColorBrewer Rcpp viridisLite]; };
-  scalpel = derive2 { name="scalpel"; version="1.0.0"; sha256="0zk81q2f49vrbprlvjq3q4s2ak7rrlpj55rrfkqr8nq1vvi6nxd2"; depends=[gam igraph Matrix protoclust R_matlab SDMTools]; };
+  scales = derive2 { name="scales"; version="1.0.0"; sha256="0353dkh3d7x78463c6ds80hcml59lrqwr8rlv82a8dnkxla4l7qc"; depends=[labeling munsell R6 RColorBrewer Rcpp viridisLite]; };
+  scalpel = derive2 { name="scalpel"; version="1.0.1"; sha256="18mapg96xl9a1g85h5xhqsz1333hkc28z0ivfjaff933p1kc6sng"; depends=[gam igraph Matrix protoclust R_matlab SDMTools]; };
   scalreg = derive2 { name="scalreg"; version="1.0"; sha256="06iqij1cyiw55ijzk2byrwh3m5iwsra7clx8l4v69rc236q8zbdi"; depends=[lars MASS]; };
-  scam = derive2 { name="scam"; version="1.2-2"; sha256="04w0y2l4h3xddb6mzyhf0mcx6kbphrmjyfc59cqw9z88sssfrmm7"; depends=[Matrix mgcv]; };
+  scam = derive2 { name="scam"; version="1.2-3"; sha256="0ray17cbfd25x61kvpbg1kplpgz1dak4kp3p6lalffgjh94qry27"; depends=[Matrix mgcv]; };
   scan = derive2 { name="scan"; version="0.20"; sha256="1xyng9dlfmp7n2h91n4xy9lx3jm205gjiizdqk1yj1qw8mmahvqc"; depends=[nlme]; };
   scanstatistics = derive2 { name="scanstatistics"; version="1.0.1"; sha256="147fhq34vqkq50bw0g3a112048s5jaxxcwm3iv5wykp8zl45msmz"; depends=[dplyr emdbook ismev magrittr plyr purrr Rcpp RcppArmadillo reliaR sets tibble tidyr]; };
   scape = derive2 { name="scape"; version="2.3-2"; sha256="1i3k37r7lisrj1pblni5xn76kf6py52s4yd51fm78c3286yfaasf"; depends=[coda Hmisc lattice]; };
   scar = derive2 { name="scar"; version="0.2-1"; sha256="04x42414qxrz8c7xrnmpr00r46png2jy5giwicdx6gx8jwrkzhzs"; depends=[]; };
   scatr = derive2 { name="scatr"; version="1.0.1"; sha256="1c2z722i7d7qflh4mzb8kkix5i22wph98kwz2p98x2mhaml8802d"; depends=[cowplot ggplot2 ggridges ggstance jmvcore R6]; };
   scatterD3 = derive2 { name="scatterD3"; version="0.8.2"; sha256="1cfh060ffwxy33b1f7n8mba1sbbwgx28mqn08im16dqbphkcmx1z"; depends=[digest ellipse htmlwidgets]; };
-  scatterpie = derive2 { name="scatterpie"; version="0.1.0"; sha256="0ssfvnwwfyavzxxrbimb623pc0y72qvbis16sdr6fxvyfif4qmm5"; depends=[ggforce ggplot2 rlang tidyr]; };
+  scatterpie = derive2 { name="scatterpie"; version="0.1.2"; sha256="0r3m3781jvzxr0ry7rhd085c0xl5620sf5zcq9nnfl613imwxj2b"; depends=[ggforce ggplot2 rlang rvcheck tidyr]; };
   scatterplot3d = derive2 { name="scatterplot3d"; version="0.3-41"; sha256="152xqz9c70qab86mpgng049gxsg5f4fpf1m8dh93fb9v1avjd0sc"; depends=[]; };
-  scclust = derive2 { name="scclust"; version="0.1.1"; sha256="1bml4qyyspwaqxzwjhqy8i450614p3f3dj0s0qdkv6psa60h0w5z"; depends=[distances]; };
+  scclust = derive2 { name="scclust"; version="0.2.0"; sha256="11jnjij62vcnvbd9m27xjdmyjib35isviqb07435yas93bn01vz4"; depends=[distances]; };
   scdensity = derive2 { name="scdensity"; version="1.0.2"; sha256="173xm3bf8vxl30zk4n451al7m003byg9q4d1l1pfyfa4xnv8qdg9"; depends=[lpSolve quadprog]; };
   scdhlm = derive2 { name="scdhlm"; version="0.3.1"; sha256="1b5x4kqvmkpb8wbgfhnwqakisw6hfnvama2bsnd8kvw4alfanxhm"; depends=[nlme]; };
   scenario = derive2 { name="scenario"; version="1.0"; sha256="0v1b00kiny21yx4qkk2x51cy1zqibdnd68z76qia7h5py28yhxsi"; depends=[]; };
@@ -11001,13 +11492,14 @@ in with self; {
   sciplot = derive2 { name="sciplot"; version="1.1-1"; sha256="1ydwx9kh778z3x7s3i6gqinqi6bmsf6bslaf0mgszj0nrgcmj6y3"; depends=[]; };
   sclero = derive2 { name="sclero"; version="0.2"; sha256="1vqysby822s958msnwcqmz78193vrgmpf6si1jnfb9cj90hh7wgg"; depends=[plyr RImageJROI spatstat]; };
   scmamp = derive2 { name="scmamp"; version="0.2.55"; sha256="17qhj9l1akxachaimy9d5rls8adph8aalj3qr6ckip29a8ma9gf7"; depends=[ggplot2 graph reshape2 Rgraphviz]; };
+  scoper = derive2 { name="scoper"; version="0.1.0"; sha256="1a170x1h2wglsmqp0fjga2q29yfnfdbgjcm62412n575j9d4xp5n"; depends=[alakazam doParallel dplyr foreach ggplot2 iterators lazyeval shazam stringi]; };
   scopr = derive2 { name="scopr"; version="0.3.2"; sha256="0wssxfhkgpqzw5gbqbidawj7wizwcbra8inrxvnmsjxq0fhhzazy"; depends=[behavr data_table memoise readr RSQLite stringr]; };
   score = derive2 { name="score"; version="1.0.2"; sha256="1p289k1vmc7qg70rv15x05dyb92r7s6315whr1ibi40sqln62a5s"; depends=[msm]; };
-  scorecard = derive2 { name="scorecard"; version="0.1.8"; sha256="04zjlpchdbbm40n12am5094ha36bdiycbq5vzbh0vc3kmc6xhjp1"; depends=[data_table doParallel foreach ggplot2 gridExtra]; };
+  scorecard = derive2 { name="scorecard"; version="0.1.9"; sha256="1786j57kg6v8yl88p5zhyi3g7vp5j4j8bci7bill134x9z63nacq"; depends=[data_table doParallel foreach ggplot2 gridExtra]; };
   scorecardModelUtils = derive2 { name="scorecardModelUtils"; version="0.0.0.9"; sha256="1hnz9dgx5fxbhh54psalrr50n22vc250v2xxxl49j09q26xh37kl"; depends=[car e1071 gbm ggplot2 partykit randomForest reshape2 sqldf stringr]; };
   scorer = derive2 { name="scorer"; version="0.2.0"; sha256="1mc4hxcrqzh4dmz5fy40740bnrp4fxia81fj3cdw9382p67ivhim"; depends=[Rcpp]; };
   scoring = derive2 { name="scoring"; version="0.6"; sha256="114jlpbnm15fdan5lr40adxdzwajy3yhdw6dm4kvkvky6qhcx7q5"; depends=[]; };
-  scoringRules = derive2 { name="scoringRules"; version="0.9.4"; sha256="0m8050qqb3j0miwfbadp6lmd2q5vicsqn4waw4jszz52fhb8mv27"; depends=[MASS Rcpp RcppArmadillo]; };
+  scoringRules = derive2 { name="scoringRules"; version="0.9.5"; sha256="0aby9il4jd6ky8py0qk651al8c0ffqnmfnnzphy6pvndc0q0m085"; depends=[knitr MASS Rcpp RcppArmadillo]; };
   scout = derive2 { name="scout"; version="1.0.4"; sha256="0vr497g7g1xhf75cwjbjsns2fvdzy86iibbf5w0g2xylw82s4lh2"; depends=[glasso]; };
   scpm = derive2 { name="scpm"; version="1.0-2"; sha256="0jrr90lcalchfqmq5c8ja7ws88rpri3gjdc5z4jfpazn2vznx26n"; depends=[geoR interp lattice MASS Matrix mvtnorm RandomFields rgl]; };
   scraEP = derive2 { name="scraEP"; version="1.1"; sha256="0dimvdjlgaymjmd3gf60hxcavpr58bpffrfhlksnrfzbb7an65dd"; depends=[data_table RCurl XML]; };
@@ -11015,42 +11507,43 @@ in with self; {
   scrime = derive2 { name="scrime"; version="1.3.3"; sha256="1vp7ai10m0f3s0hywyqh0yllxj6z6p795zqpr6vp58fh6yq20x73"; depends=[]; };
   scriptName = derive2 { name="scriptName"; version="1.0.0"; sha256="0jpr9x5hf45cik5zxqw0j3vkvbk04a7ck2crvb2472hrv7s9al55"; depends=[purrr rlang]; };
   scriptests = derive2 { name="scriptests"; version="1.0-16"; sha256="11l145gvzkxqwbzw976rq94krly1p4lahqw051dwaacarq4hnrdg"; depends=[]; };
-  scriptexec = derive2 { name="scriptexec"; version="0.2.1"; sha256="09gaccqadb51ia66xk9vi3p9472s82bg6v8i6ba390g04yipbipi"; depends=[]; };
+  scriptexec = derive2 { name="scriptexec"; version="0.2.3"; sha256="0smpn7d1lqyq5x8l5rdhybzv0sqrps0czv1r8bni67i80zjaaff8"; depends=[]; };
   scrm = derive2 { name="scrm"; version="1.7.2-4"; sha256="1fj0204hc0yvahg3plz3ia9kwa93mimk721mf2dljwdnj46lb067"; depends=[Rcpp]; };
   scrubr = derive2 { name="scrubr"; version="0.1.1"; sha256="0dqsk6vvc79qmjcr1gdksqzbd064nkyqfj2mxg6z7aifqgxs8zzz"; depends=[lazyeval magrittr Matrix qlcMatrix]; };
   scs = derive2 { name="scs"; version="1.1-1"; sha256="1qx8b73g5v7mjx85lx5bln6j6i9r7m238i7hm8adr2jrbl33532y"; depends=[Matrix]; };
   scuba = derive2 { name="scuba"; version="1.9-1"; sha256="1b92b6p9dn54rmcaw2ng41pvvvkmrzgg12d6zcr3yh8qgi89pvdi"; depends=[]; };
-  sdPrior = derive2 { name="sdPrior"; version="0.5"; sha256="1l086a4ghx36fi951z968mpqdjpd64ilqvim6hcm05pl8dj7xcva"; depends=[BayesX caTools doParallel GB2 MASS mgcv mvtnorm pscl rsvd]; };
+  sdPrior = derive2 { name="sdPrior"; version="1.0-0"; sha256="0g4crlasnvxz752n3az5jc681jvvj2g87c3a8s2h1i2vh64p5h37"; depends=[doParallel GB2 MASS mgcv mvtnorm pscl]; };
+  sdStaf = derive2 { name="sdStaf"; version="1.0.0"; sha256="0yd6nh2kdg81j4hdwbjjmd7ah4jl0p5vm15jq9v3mkw6rrjdz9bi"; depends=[dismo dplyr ggplot2 raster rasterVis rgdal rgeos sp tidyr]; };
   sda = derive2 { name="sda"; version="1.3.7"; sha256="1v0kp6pnjhazr8brz1k9lypchz8k8gdaby8sqpqzjsj8klghlcjp"; depends=[corpcor entropy fdrtool]; };
   sdat = derive2 { name="sdat"; version="1.1"; sha256="1mxijw2yfblqjvqqb2xrzhfn9c872i1q9ggw24xicvr2fk4lvjw6"; depends=[]; };
   sdcMicro = derive2 { name="sdcMicro"; version="5.3.0"; sha256="0n2pbwm344iw3zm0nf6ybx51hf79jhjzd2780c57n71jl2ybxzpk"; depends=[car carData cluster data_table DT e1071 ggplot2 haven knitr MASS prettydoc Rcpp rhandsontable rmarkdown robustbase sets shiny shinyBS VIM xtable]; };
-  sdcTable = derive2 { name="sdcTable"; version="0.23"; sha256="00zh55zpi6y5mrhyzxj1r9f2r1axikgy0dimxv7978sasxsm3hnm"; depends=[data_table data_tree knitr lpSolveAPI Rcpp Rglpk rlang slam stringr]; };
+  sdcTable = derive2 { name="sdcTable"; version="0.24"; sha256="10qwfa64fji7l24znrhl15ich2bmsq2y219y0pbr6q4xy02vp515"; depends=[data_table data_tree knitr lpSolveAPI Rcpp Rglpk rlang slam stringr]; };
   sdcTarget = derive2 { name="sdcTarget"; version="0.9-11"; sha256="18cf276mh1sv16xn0dn8par4zg8k7y8710byxiih6db4i616fjpi"; depends=[doParallel foreach magic tuple]; };
   sddpack = derive2 { name="sddpack"; version="0.9"; sha256="1963l8jbfwrqhqcpif73di9i5mb996r4f8smjyil6l7sdir7cg9l"; depends=[]; };
   sde = derive2 { name="sde"; version="2.0.15"; sha256="0gxyhq9lafd62y68h7fd746a3jz3jdsm0shgwm2ylmp4a2f5cdmm"; depends=[fda MASS zoo]; };
   sdef = derive2 { name="sdef"; version="1.7"; sha256="0x2b8shp02ik0dd11wi3jcrl9h9m963fnkfy47fwwhav9x6jg0jf"; depends=[]; };
   sdm = derive2 { name="sdm"; version="1.0-46"; sha256="14z8336yxja1j7mx8xszqqi6s24nk6r5bycmw8h01wvq4rqgxi4g"; depends=[raster sp]; };
-  sdmpredictors = derive2 { name="sdmpredictors"; version="0.2.6"; sha256="1kbgv5x5ilzccafl20x86fi9f7jqxnccvb8k7dy8q41s9n36qwfs"; depends=[R_utils raster rgdal]; };
+  sdmpredictors = derive2 { name="sdmpredictors"; version="0.2.8"; sha256="18374f2bnhh3nb62xf1h6fbqgpimlnkc2vbx5xkg5gyfylydz0v9"; depends=[R_utils raster rgdal]; };
   sdmvspecies = derive2 { name="sdmvspecies"; version="0.3.2"; sha256="19avkag13ij1k65vqhmvcy8j50j8vrgw4mjc49x8i63w3d4z1wxh"; depends=[psych raster]; };
   sdnet = derive2 { name="sdnet"; version="2.3.8"; sha256="10c962wbzgl2zpz7yx5kpryldbbq76qrd5pnz4rlmbaa9kfg08s5"; depends=[]; };
   sdols = derive2 { name="sdols"; version="1.6"; sha256="083yvlqgr5151dy0570jkhns12nyj2na2gk39vf8gv0gyw72c3yk"; depends=[commonsMath rscala]; };
   sdprisk = derive2 { name="sdprisk"; version="1.1-5"; sha256="1c6mipq8sh8347i7m7dh47f69fr21xkrsk8yjgsdvcy41h8zijmf"; depends=[numDeriv PolynomF rootSolve]; };
-  sdpt3r = derive2 { name="sdpt3r"; version="0.1"; sha256="06mw1h6c8gkhi3vhal17h7px3bb277xz15k2ryqjwc7agzwhmv8c"; depends=[Matrix]; };
+  sdpt3r = derive2 { name="sdpt3r"; version="0.2"; sha256="0q97gxmf2vka566dm6jry5q2scqnm88fq0v5kqkphihsi52kya23"; depends=[Matrix]; };
   sdtoolkit = derive2 { name="sdtoolkit"; version="2.33-1"; sha256="0pirgzcn8b87hjb35bmg082qp14idc5pfvm6dikpgkswag23hwh8"; depends=[]; };
   sdwd = derive2 { name="sdwd"; version="1.0.2"; sha256="0l0w4jn2p9b7acp8gmlv4w8n662l397kbrm4glslik0vnmjv151w"; depends=[Matrix]; };
   seaaroundus = derive2 { name="seaaroundus"; version="1.2.0"; sha256="09nyypzylb0y04ssd9ak2cw8wpy6a3nmabg9p7jrc8qz54wl6z4q"; depends=[crul ggplot2 jsonlite maps rgdal scales sp wicket]; };
-  seacarb = derive2 { name="seacarb"; version="3.2.8"; sha256="02l10jgjw79vf31c8qfzfpyrfhlc0j2dibs4pkk5y7visggzr47p"; depends=[gsw oce]; };
+  seacarb = derive2 { name="seacarb"; version="3.2.10"; sha256="0l3df69744bsibml6lq3a8cbx846095vgv0icnmrp6rz07x74g7p"; depends=[gsw oce]; };
   sealasso = derive2 { name="sealasso"; version="0.1-2"; sha256="0cjy3fj170p5wa41c2hwscmhqxwkjq22vhg9kbajnq7df2s20jcp"; depends=[lars]; };
   sealr = derive2 { name="sealr"; version="0.1.1"; sha256="1y31k4y3v1mvjagsbr4647hdn8rk4nfdyixidl3myq0qhnaf0x6w"; depends=[clipr clisymbols digest dplyr glue magrittr purrr rlang rstudioapi styler tibble tidyr]; };
   searchConsoleR = derive2 { name="searchConsoleR"; version="0.3.0"; sha256="1z8bdlxq2sk8bcg164wy0yrmsx0inf0aj5ya2pybvadss8wr0qlr"; depends=[googleAuthR stringr]; };
   searchable = derive2 { name="searchable"; version="0.3.3.1"; sha256="0xc87i2q42j7dviv9nj4hkgjvpfiprkkjpgzwsy47vp7q8024dv0"; depends=[magrittr stringi]; };
   searcher = derive2 { name="searcher"; version="0.0.3"; sha256="004k757hn5y80k7kim3049n3mjrsimqpzdz5fis2ggxbdwwf1bs1"; depends=[]; };
   seas = derive2 { name="seas"; version="0.5-2"; sha256="0hn4d5dc01zyycd7l3vj1sx6bq668n7fzffw9ypaa5l20fizs0ay"; depends=[MASS]; };
-  season = derive2 { name="season"; version="0.3.6"; sha256="1q0xih4vj0pv1xcgdi2d6vl56gd1gmzfbyc0aklpjz9iaxmxgb8f"; depends=[coda ggplot2 MASS mgcv survival]; };
+  season = derive2 { name="season"; version="0.3.8"; sha256="0kw3gvy7rv0rms0zj1rvqlfdn3yxr9r9ldm21zl2xrpx9cy04d2d"; depends=[ggplot2 MASS survival]; };
   seasonal = derive2 { name="seasonal"; version="1.6.1"; sha256="1nvavn84f2zb0f6n352br52wcrcmnxv6vprzcpymrnzik7pyp8y6"; depends=[x13binary]; };
   seasonalview = derive2 { name="seasonalview"; version="0.3"; sha256="1l705yc7ssldsfckbgnvd95sh3zzhpkmf1rr6ar2s60s3wsyly4n"; depends=[dygraphs htmlwidgets openxlsx seasonal shiny shinydashboard xtable xts zoo]; };
   seawaveQ = derive2 { name="seawaveQ"; version="1.0.0"; sha256="19vm1f0qkmkkbnfy1hkqnfz6x2a7g9902ka76bhpcscynl69iy56"; depends=[lubridate NADA survival]; };
-  secr = derive2 { name="secr"; version="3.1.6"; sha256="0mf0p7asx2shf630j5xd7ym21f76a0af536wzs9rdbhq0xychv6z"; depends=[abind MASS mgcv nlme raster sp stringr]; };
+  secr = derive2 { name="secr"; version="3.1.7"; sha256="0shshkgv89q2w51nmrqx482d8d28xjyrwdnwr6g4061rxms7plsz"; depends=[abind MASS mgcv nlme raster sp stringr]; };
   secrdesign = derive2 { name="secrdesign"; version="2.5.4"; sha256="1kbqgdjpyns11ag16rgw9n6mvmjgdypk9lv3yzwf4kynds46wbbk"; depends=[abind secr]; };
   secret = derive2 { name="secret"; version="1.0.0"; sha256="09b28f7ndc167bbanbdydralykq718fixnrgs5xr9d3fbdhz1vdl"; depends=[assertthat curl jsonlite openssl rprojroot]; };
   secrlinear = derive2 { name="secrlinear"; version="1.1.1"; sha256="0jcvraypkss1gphh4cjb0b4v9460fj4dw80yd057ah11p9942ggs"; depends=[igraph maptools MASS rgdal secr sp]; };
@@ -11060,7 +11553,7 @@ in with self; {
   seedCCA = derive2 { name="seedCCA"; version="1.0"; sha256="1grs6ykiyp8p5gh93hgb4niggppbh2wzwl6yx0l1qs9fkcz5zvy7"; depends=[CCA corpcor]; };
   seedy = derive2 { name="seedy"; version="1.3"; sha256="1a21sl8i7z12cjaqj08lkq3viazxlgxv82vaarm58fgbpsvdi0m0"; depends=[]; };
   seewave = derive2 { name="seewave"; version="2.1.0"; sha256="0i0zhvgl64fwpabnwvfdxndmw5whhh2fd4lhpg399w4rzrwzv92y"; depends=[tuneR]; };
-  seg = derive2 { name="seg"; version="0.5-1"; sha256="0gsdbq7b5wpknhlilrw771japr63snvx4vpirvzph4fjyby1c7rg"; depends=[sp splancs]; };
+  seg = derive2 { name="seg"; version="0.5-5"; sha256="0q1k3zh29pkxx2sq28dw1vn4nmdv7pa8pw48vmywfcm4vmqnx7xg"; depends=[sp splancs]; };
   segclust2d = derive2 { name="segclust2d"; version="0.1.0"; sha256="0kymw36cvakx84c96npkbnsvv0a1s82773ib5c802ybvkb2r1k9p"; depends=[dplyr ggplot2 magrittr plyr RColorBrewer Rcpp RcppArmadillo reshape2 scales zoo]; };
   segmag = derive2 { name="segmag"; version="1.2.4"; sha256="1i717xg1z7s35pkwzywgjf9wx7zj9xksv0k87h7p1q62y073qbqm"; depends=[plyr Rcpp]; };
   segmented = derive2 { name="segmented"; version="0.5-3.0"; sha256="0nrik5fyq59hwiwjcpbi4p5yfavgfjq6wyrynhkrbm4k6v1g1wlq"; depends=[]; };
@@ -11082,20 +11575,20 @@ in with self; {
   semPLS = derive2 { name="semPLS"; version="1.0-10"; sha256="0q5linjyv5npkw4grx3vq58iq2q1grf06ikivhkg8w7rvb7pqn6b"; depends=[lattice]; };
   semPlot = derive2 { name="semPlot"; version="1.1"; sha256="0fzz580an7mmq6vycxbcvfdqbii0qz0nghlidb6in05j8dppsnsn"; depends=[colorspace corpcor igraph lavaan lisrelToR OpenMx plyr qgraph rockchalk sem semTools XML]; };
   semPower = derive2 { name="semPower"; version="1.0.0"; sha256="0wciz5qrd40q4mxq96pibnya11ac42n37c9xhjd4zfhznhjz06bb"; depends=[]; };
-  semTools = derive2 { name="semTools"; version="0.5-0"; sha256="0akan511aj8qkn37aiw200nvyxwdqrz022ll16av2n7qsp9xdynh"; depends=[lavaan]; };
+  semTools = derive2 { name="semTools"; version="0.5-1"; sha256="0lh10yw888hcj1mdl96p5pw8gi0a1dj8panclghry6b8xaa3w7ni"; depends=[lavaan]; };
   semantic_dashboard = derive2 { name="semantic.dashboard"; version="0.1.1"; sha256="0fd5qnw5jcmf5akkv59z1zjizsczwlmnpkfd8bfminhpa89sgp1y"; depends=[shiny shiny_semantic]; };
   semdiag = derive2 { name="semdiag"; version="0.1.2"; sha256="0kjcflw7dn907zx6790w7hnf5db6bf549whfsc0c2r173kf13irp"; depends=[sem]; };
-  semds = derive2 { name="semds"; version="0.9-4"; sha256="14x6xqv15fgsxhsyxw77i3slpdaax8kcq9sx7ipwp1b83fmmqv1z"; depends=[minpack_lm pracma]; };
+  semds = derive2 { name="semds"; version="0.9-5"; sha256="16zla94jzqrm2gji4sgiz44fw15f2kf4i8s76s1cnjai6saqcf9f"; depends=[minpack_lm pracma]; };
   semiArtificial = derive2 { name="semiArtificial"; version="2.2.5"; sha256="1m8kwjhqjpqjzz22caiwpb4nb70d8y0ssf9j4rfyyh530x2q2k1m"; depends=[cluster CORElearn flexclust fpc ks logspline MASS mcclust nnet robustbase RSNNS StatMatch timeDate]; };
-  seminr = derive2 { name="seminr"; version="0.5.0"; sha256="0f8k1v2g82axhaw5a370f95h9q07qar1by795wfc3yil7pn94xmy"; depends=[]; };
+  seminr = derive2 { name="seminr"; version="0.5.3"; sha256="18yd2pcp4msy6w4gpj5znid4gygh1hg2794lhsjqxvyz36hb3i5p"; depends=[]; };
   semsfa = derive2 { name="semsfa"; version="1.1"; sha256="1k6i1m4r9y7j85rlrsgfjm8w15ax4xgf70xyvqwsszmf9950ldxx"; depends=[doParallel foreach gamlss iterators mgcv moments np]; };
   semtree = derive2 { name="semtree"; version="0.9.12"; sha256="07i82f3bnn9x7gy8gsjyd99mzcq9pk3xqb3479d338vpky2afv43"; depends=[bitops cluster digest OpenMx plotrix rpart rpart_plot sets]; };
   semver = derive2 { name="semver"; version="0.2.0"; sha256="10wpkyms2cix3bsin2q0qhkbl445pwwpa5gm2s4jjw1989namkxy"; depends=[assertthat Rcpp]; };
   sendmailR = derive2 { name="sendmailR"; version="1.2-1"; sha256="0z7ipywnzgkhfvl4zb2fjwl1xq7b5wib296vn9c9qgbndj6b1zh4"; depends=[base64enc]; };
   sendplot = derive2 { name="sendplot"; version="4.0.0"; sha256="0ia2xck94nwirwxi38nv0viz5wb8291yiak6f0wgwh84irsrfp1h"; depends=[rtiff]; };
   sensR = derive2 { name="sensR"; version="1.5-1"; sha256="0hqnk6gvlkl9harz7rh5ikbp0s0vjwi63gxixqjfhkyk02ilaa3z"; depends=[MASS multcomp numDeriv]; };
-  sensiPhy = derive2 { name="sensiPhy"; version="0.8.2"; sha256="19sbcl3873r2jayxpr83n8w36br12c6p31y830gzi7a4q0cxaxxq"; depends=[ape caper geiger ggplot2 phylolm phytools]; };
-  sensitivity = derive2 { name="sensitivity"; version="1.15.0"; sha256="02vqs1pqzivxpg2ql3wi0530cshdkz7hxvablpd1dzhvjnindknm"; depends=[boot]; };
+  sensiPhy = derive2 { name="sensiPhy"; version="0.8.3"; sha256="03qrxal0wvgiyr5vnnzc8n95h4460p11idnmr6vnr73c5f8q905h"; depends=[ape caper geiger ggplot2 phylolm phytools]; };
+  sensitivity = derive2 { name="sensitivity"; version="1.15.2"; sha256="0ilb79bbplnv5qlismp21jrzfxr1is59vww3s1p99ax303614w7m"; depends=[boot]; };
   sensitivity2x2xk = derive2 { name="sensitivity2x2xk"; version="1.01"; sha256="1r829k939zzmi0j4chdaniajchcflmmjrl3a9hwnkg0wkfnjbvdl"; depends=[BiasedUrn mvtnorm]; };
   sensitivityPStrat = derive2 { name="sensitivityPStrat"; version="1.0-6"; sha256="0rfzvkpz7dll3173gll6np65dyb40zms63fkvaiwn0lk4aryinlh"; depends=[survival]; };
   sensitivityfull = derive2 { name="sensitivityfull"; version="1.5.6"; sha256="0g2gc4rms6gd34d23kxj50pjh0yq1h6yiybj4dxwyf6i2652irhq"; depends=[]; };
@@ -11105,10 +11598,10 @@ in with self; {
   sensors4plumes = derive2 { name="sensors4plumes"; version="0.9.3"; sha256="1r9sddnlxpjck7rhm2w7z8jak7wmrxg3d62dydc5dqcqhgp54r6p"; depends=[automap conf_design emdist FNN genalg gstat lattice raster rgdal sp]; };
   sensory = derive2 { name="sensory"; version="1.1"; sha256="1zd0ajrymxi6gygcq9fqgwgy0g6c3cqz53x0k5m0ihbmh11rc7s7"; depends=[gtools MASS Matrix]; };
   senstrat = derive2 { name="senstrat"; version="1.0.3"; sha256="0j6mb55v5ivqvk8nn8fjlzrbdgj6csa58yc6gy1g07m7gk2qz2np"; depends=[BiasedUrn MASS]; };
-  sentimentr = derive2 { name="sentimentr"; version="2.3.2"; sha256="14f5zac5ywz864fbcia05kdlxx4bgvasc1l1abcrk34i2jvh8zwl"; depends=[data_table ggplot2 lexicon stringi syuzhet textclean textshape]; };
-  sentometrics = derive2 { name="sentometrics"; version="0.4"; sha256="0mr064qb1wr0bpbrx1bl3imxy95ybxlx4bxpy25qcz07v5nynk5l"; depends=[abind caret data_table doParallel foreach ggplot2 ggthemes glmnet ISOweek MCS quanteda Rcpp RcppArmadillo RcppRoll stringi zoo]; };
+  sentimentr = derive2 { name="sentimentr"; version="2.6.1"; sha256="1xwi3rjyhx3w042r2g4a8rzqr2svam7fdx2ivc9vyhj9y81az7fh"; depends=[data_table ggplot2 lexicon stringi syuzhet textclean textshape]; };
+  sentometrics = derive2 { name="sentometrics"; version="0.5.1"; sha256="1icnf7p45hgh2z02xmxc5a7bx9k5r0jjs3mnpr1j97vnm19rk8jx"; depends=[abind caret data_table foreach ggplot2 glmnet ISOweek quanteda Rcpp RcppArmadillo RcppParallel RcppRoll stringi zoo]; };
   separationplot = derive2 { name="separationplot"; version="1.1"; sha256="0qfkrk8n6jj8l7ywngwsaikfwmd9hbrpr43x0l9wkjjp1asgs5l6"; depends=[]; };
-  seplyr = derive2 { name="seplyr"; version="0.5.8"; sha256="0ca9mg2fx3jdgybbiq2a22q5p6613awxwysrpgdbs5lrqdm1ywim"; depends=[dplyr rlang tidyr wrapr]; };
+  seplyr = derive2 { name="seplyr"; version="0.8.2"; sha256="0inqnrqf2dld2dkhwp16iz8hzrvi01jbj437ghhvprfp06320lxg"; depends=[dplyr rlang tidyr wrapr]; };
   seqCBS = derive2 { name="seqCBS"; version="1.2"; sha256="1kywi3kvvl9y6nm7cwf6fj8gz9gzznp5va336g1akzgy77k82d8v"; depends=[clue]; };
   seqDesign = derive2 { name="seqDesign"; version="1.1"; sha256="1694swd8ik9fbiflmnw4xpq82kq18rqzkw0dv5pvq30c47xjgamv"; depends=[survival xtable]; };
   seqHMM = derive2 { name="seqHMM"; version="1.0.8-1"; sha256="18rpmncm5xn34l336kzg0pby59pw16s5cdv3h946yhrcjigz0kkn"; depends=[gridBase igraph Matrix nloptr numDeriv Rcpp RcppArmadillo TraMineR]; };
@@ -11116,86 +11609,90 @@ in with self; {
   seqMeta = derive2 { name="seqMeta"; version="1.6.7"; sha256="11dscdrlnk5jzg0q2g59qis4xjr4xs86bi463jmhq53n9gsb4i1l"; depends=[CompQuadForm coxme Matrix survival]; };
   seqRFLP = derive2 { name="seqRFLP"; version="1.0.1"; sha256="1i98hm8wgwr8b6hd237y2i9i0xgn35w4n2rxy4lqc5zq71gkwkvk"; depends=[]; };
   seqinr = derive2 { name="seqinr"; version="3.4-5"; sha256="17zv0n5cji17izwmwg0jcbxbjl3w5rls91w15svcnlpxjms38ahn"; depends=[ade4 segmented]; };
-  seqminer = derive2 { name="seqminer"; version="6.0"; sha256="057j1l6dip35l1aivilapl2zv9db677b3di2pb3sfgq2sxg0ps3l"; depends=[]; };
+  seqminer = derive2 { name="seqminer"; version="6.1"; sha256="15yhg4vfc7jg1jnqb3371j00pgbmbyc9l1xx63hq1l3p34lazq2l"; depends=[]; };
   seqmon = derive2 { name="seqmon"; version="2.1"; sha256="0p7vbrx0l59wyxhg59a8nnnk1z46inys30rpchj0v5ggadaazjkx"; depends=[]; };
   seqtest = derive2 { name="seqtest"; version="0.1-0"; sha256="1bdfww9szh7h278id5xpfc39mxkcix3yvsdwc68wx3q3x0wxhqhq"; depends=[]; };
   sequences = derive2 { name="sequences"; version="0.5.9"; sha256="17571m525b6a3k4f0m936wfq401181gx1fpb7x4v0fhaldzdmk3a"; depends=[Rcpp]; };
   sequenza = derive2 { name="sequenza"; version="2.1.2"; sha256="0f3aj96qvbr1wqimlv6rxg0v34zlrgc6pbdy7sfkwfzs1n44q1xf"; depends=[copynumber squash]; };
-  sequoia = derive2 { name="sequoia"; version="1.0.2"; sha256="1pn282s40ssprjrfh5drjr123ldlp84z3kviv6mmavrwhkp5lq5g"; depends=[plyr]; };
+  sequoia = derive2 { name="sequoia"; version="1.1.1"; sha256="12s6890jr9rvp45h1hrfwpndsrr7na0kz1a29hd96ycnk7bvd1ic"; depends=[plyr]; };
   sergeant = derive2 { name="sergeant"; version="0.5.2"; sha256="02chkyvmwd4nimw62v82rfbid1xqw5b1335na44pdi675g904250"; depends=[DBI dbplyr dplyr htmltools httr jsonlite purrr readr scales]; };
   serial = derive2 { name="serial"; version="1.3"; sha256="1ibwd8xmkd0pwdhivm6h3yd3rsi28mai5n7qcs1bq2mx8hb5lg7f"; depends=[]; };
   seriation = derive2 { name="seriation"; version="1.2-3"; sha256="1q6hw4hjw224b4y0dc0j630v2pgj6sn455nwkilb70w8k31hpk92"; depends=[cluster colorspace dendextend gclus gplots MASS qap registry TSP]; };
-  serieslcb = derive2 { name="serieslcb"; version="0.1.0"; sha256="09mg8x738q7p16z95rrfj9fzmsrl34fvx9nsz1ndkp4h6cwf679l"; depends=[gplots shiny]; };
+  serieslcb = derive2 { name="serieslcb"; version="0.2.0"; sha256="1af7mvfiv40hwjlf6f53grw48c343rnmzxiyw4yx95mf8rk46bsd"; depends=[gplots shiny]; };
   seroincidence = derive2 { name="seroincidence"; version="2.0.0"; sha256="0sam4y7w6prswz0izkm1a9v2k5rv7z22g1ajy15n9xix9aml5ms4"; depends=[]; };
   serrsBayes = derive2 { name="serrsBayes"; version="0.3-13"; sha256="1s38mva66l684i0wrk65r3gdafjlih7bglsmi9fr44yk0wavygrm"; depends=[MASS Matrix Rcpp RcppEigen truncnorm]; };
-  servr = derive2 { name="servr"; version="0.10"; sha256="0yz3igqsiyqnjj1ngh199zicg3spx4kbmvl0wc8i8xahk6l9g06v"; depends=[httpuv jsonlite mime xfun]; };
+  servr = derive2 { name="servr"; version="0.11"; sha256="0yj3p1risf269n25dd56lqv82dsxv6a0aq4bcc1ddn9wv7h2xdfi"; depends=[httpuv jsonlite mime xfun]; };
   sesem = derive2 { name="sesem"; version="1.0.2"; sha256="0b1xzv38wpkhhlq87xrvlh45b8ksbi8bg4ar5hrf8gxa19r9rmi5"; depends=[gplots lavaan mgcv]; };
   session = derive2 { name="session"; version="1.0.3"; sha256="04mcy1ac75fd33bg70c47nxqxrmqh665m9r8b1zsz5jij1sbl8q5"; depends=[]; };
-  sessioninfo = derive2 { name="sessioninfo"; version="1.0.0"; sha256="00g3lbvk1cjjzckl70fn5n3579qb301im4lbm3cip5c2v8k283dk"; depends=[clisymbols withr]; };
+  sessioninfo = derive2 { name="sessioninfo"; version="1.1.0"; sha256="01c0m8yzadpwd825hky6as0f8ka4xyz7zfy0ih2iy7qqw11w6qn5"; depends=[cli withr]; };
   setRNG = derive2 { name="setRNG"; version="2013.9-1"; sha256="02198cikj769yc32v8m2qrv5c01l2fxmx61l77m5ysm0hab3j6hs"; depends=[]; };
   sets = derive2 { name="sets"; version="1.0-18"; sha256="16v7650p47khqrbbw0z98llmwmmhswqmhri0n7nrfhdqwmby1lbl"; depends=[]; };
   setter = derive2 { name="setter"; version="0.0-1"; sha256="10fwrx8yysp99rrkbnn3rbz79vyzr2h3p7zxxlqapw1k2lllp0r5"; depends=[assertive_base]; };
   settings = derive2 { name="settings"; version="0.2.4"; sha256="092sv6nccm6p2d695l9w0zfi2xgymk12c8p8lhl9nb86mxrb3nry"; depends=[]; };
   severity = derive2 { name="severity"; version="2.0"; sha256="1mp19y2pn7nl9m8xfljc515kk5dirv0r2kypazpmd956lcivziqq"; depends=[]; };
-  sf = derive2 { name="sf"; version="0.6-3"; sha256="0c6ayyclhlna2jnpwi6glafw7ip7ar0ycsmms79x451mdqb5xvja"; depends=[classInt DBI magrittr Rcpp units]; };
+  sf = derive2 { name="sf"; version="0.7-1"; sha256="0xpgv1fyha61s5sa2msgsznl23yi2rpki6jnjv7xg1a26bl0il89"; depends=[classInt DBI magrittr Rcpp units]; };
   sfa = derive2 { name="sfa"; version="1.0-1"; sha256="1acqxgydf8j5csdkx0yf169x3yaa31r0ccdrqarh6vj1hacm89ad"; depends=[]; };
   sfadv = derive2 { name="sfadv"; version="1.0.1"; sha256="1rfpm6km5pckwhqgpvidm6qsj5sjdaqqj5b0sgvpslivfa4c80cr"; depends=[gmm minpack_lm]; };
   sfc = derive2 { name="sfc"; version="0.1.0"; sha256="0cm4mfcfd9bhf2j5fppsihzrfipnldb6q3xradd88z9pwgrkfx2a"; depends=[dplyr sna tidyr triangle zoo]; };
   sfdct = derive2 { name="sfdct"; version="0.0.6"; sha256="0ilh89mfwp1yqn44yn80vz1a6g65hryk6w87ngzvak3pd6jxq6aa"; depends=[dplyr RTriangle sf sp tibble]; };
   sfinx = derive2 { name="sfinx"; version="1.7.99"; sha256="14v47y00qwvc2s0vzjw19hwn85nzj8lna539c75qq6zkn6kir6va"; depends=[]; };
   sfsmisc = derive2 { name="sfsmisc"; version="1.1-2"; sha256="0cgq2h11ngkzd6p34k6mqjnvlvc5vj4lnqrl64k05lb391j391w0"; depends=[]; };
-  sft = derive2 { name="sft"; version="2.2-0"; sha256="0d1yiimc899i09yyrv1x40ixqss87xjpy08ab16h9faxd4bsk3y2"; depends=[fda SuppDists]; };
+  sft = derive2 { name="sft"; version="2.2-1"; sha256="0fxz64ba58n6ghfqsgq64n1c7qkvi8c3lsa86732mil9w71yxw33"; depends=[fda SuppDists]; };
   sgPLS = derive2 { name="sgPLS"; version="1.7"; sha256="1jk2j1zn5vq82rcjflnk7g6y2q0v5jl14k804dmigqg013gbykql"; depends=[mixOmics mvtnorm]; };
   sgRSEA = derive2 { name="sgRSEA"; version="0.1"; sha256="0vyypnq81l36x0j44q2l9wbf3x4krz4fzypi7vyqhaq97mkzaw5j"; depends=[]; };
   sgee = derive2 { name="sgee"; version="0.6-0"; sha256="055iydainzywb1s5id5rl9i94dj5arr9b6qz15p8wps49vm2mlp3"; depends=[copula mvtnorm]; };
   sgeostat = derive2 { name="sgeostat"; version="1.0-27"; sha256="1iq9p2jk8bpv1h853a1l91d5c5dxnhkk3cmkd01siqqvj04hv4vb"; depends=[]; };
+  sglOptim = derive2 { name="sglOptim"; version="1.3.7"; sha256="19rwich72xzdlwkp6cpqdjxa6hcfd4ys1ia66gzpvkyqs05m3561"; depends=[BH doParallel foreach Matrix Rcpp RcppArmadillo RcppProgress]; };
   sglasso = derive2 { name="sglasso"; version="1.2.3"; sha256="1xf4jni7gybk66wp542p92jxrp4lf63ypbwsnb3av5db04bis7ll"; depends=[igraph Matrix]; };
   sglg = derive2 { name="sglg"; version="0.1.3"; sha256="17w9mfb53ll8aqasl4ysnb0b7sk6cgp7s1cfvn07rg5win2swqrj"; depends=[Formula robustloggamma ssym survival]; };
   sglr = derive2 { name="sglr"; version="0.7"; sha256="11gjbvq51xq7xbmpziyzwqfzf4avyxj2wpiz0kp4vfdj3v7p4fp9"; depends=[ggplot2 shiny]; };
-  sgmcmc = derive2 { name="sgmcmc"; version="0.2.2"; sha256="1ga3dynhldkl98fd7fzbbhb4bryf6nyijwvxsj8i1szy4jsv8q3q"; depends=[tensorflow]; };
+  sgmcmc = derive2 { name="sgmcmc"; version="0.2.3"; sha256="08n2m1aksa5frasmc4xa7c9b444icnzj0ycixvnq3d13v803ham4"; depends=[reticulate tensorflow]; };
+  sgmodel = derive2 { name="sgmodel"; version="0.1.0"; sha256="03s9z7n7w3pys5dp1z5x91bszgv3q1sax5z591dz9rvmn5glp2lj"; depends=[ggplot2 ramify Rtauchen tidyverse]; };
   sgof = derive2 { name="sgof"; version="2.3"; sha256="12bpyvg5df1m2ar6frpi10zlj3dk9h61r13rzn3w5a3nyk8gljsg"; depends=[poibin]; };
   sgr = derive2 { name="sgr"; version="1.3"; sha256="0zxmrbv3fyb686hcgfy2w1w2jffxf41ab8yc90dsgf931s9c55wn"; depends=[MASS]; };
   sgt = derive2 { name="sgt"; version="2.0"; sha256="0qb3maj5idwafs40fpdfrwzkadnh5yg8fvfzfs51p9yy69kbmlkx"; depends=[numDeriv optimx]; };
   shades = derive2 { name="shades"; version="1.2.0"; sha256="06mz09rrrjp4dkzbw6nnv6n3k80ddwzaw4pkp4127d1f4cij9pnj"; depends=[]; };
-  shadow = derive2 { name="shadow"; version="0.5.3"; sha256="036jh63y3i42yfjm96yp0xp3p77v1mzj77q0vl9msjhd246l5gm8"; depends=[plyr raster rgeos sp]; };
-  shadowtext = derive2 { name="shadowtext"; version="0.0.2"; sha256="17ccylxnl6837cf81fwkgywjmqizmcm6mhqak10sl5apnqm5n1nl"; depends=[ggplot2]; };
+  shadow = derive2 { name="shadow"; version="0.5.7"; sha256="11x3vrkar0cf0x8dgsylhk4j53mcpw1vcja0wfxa08y9rcbjlb5b"; depends=[plyr raster rgeos sp]; };
+  shadowtext = derive2 { name="shadowtext"; version="0.0.3"; sha256="1mqi7n6m9mm86z3gv6cf37qbq8p4n0lqlzs9d7x873a27bpclca0"; depends=[ggplot2]; };
   shallot = derive2 { name="shallot"; version="0.4.4"; sha256="0bjbw8l5lzz5d6nxgwjby40fxvxrfli0wkipdf84pg4nigy84w2w"; depends=[commonsMath rscala sdols]; };
   shape = derive2 { name="shape"; version="1.4.4"; sha256="0hadk3mapkhbh8xjkiz52vxdagmmgvm15xwpzb90ikw4giyipjzl"; depends=[]; };
   shapeR = derive2 { name="shapeR"; version="0.1-5"; sha256="17fq4gsdvyniq7n4x1xdvb5kk50184i7why3pdf1djjhknym087j"; depends=[gplots jpeg MASS pixmap vegan wavethresh]; };
   shapefiles = derive2 { name="shapefiles"; version="0.7"; sha256="08ghndihs45kylbzd9wnxffn8ixvxjhjnjldjyd526ai2sj8xcgf"; depends=[foreign]; };
-  shapes = derive2 { name="shapes"; version="1.2.3"; sha256="1fzwpqa0paql4n652diqsqylz5r5crblfip6g6c0vszrvy7avi4q"; depends=[MASS rgl scatterplot3d]; };
+  shapes = derive2 { name="shapes"; version="1.2.4"; sha256="1zqykhx8rz1k2ahi2lmmzll1c8k0as6vw4gbd3rpfb5fvpni3ni0"; depends=[MASS minpack_lm rgl scatterplot3d]; };
   sharpeRratio = derive2 { name="sharpeRratio"; version="1.1"; sha256="0rgsad8idhjyjgwlzk358jlqkqf6sk7g6vl3fchkamjzxnhbb8p9"; depends=[ghyp Rcpp]; };
   sharpr2 = derive2 { name="sharpr2"; version="1.1.1.0"; sha256="1r7anfr296l5sbhgry6rb15hlca6mpcm24qssdzz9bckavyfvqgi"; depends=[Matrix mvtnorm]; };
   sharpshootR = derive2 { name="sharpshootR"; version="1.0"; sha256="1x9cava7b9lg8qpmjqlbkqmpc9a2dn8k4kl71s4himr4wzp9z4y3"; depends=[ape aqp circular cluster digest Hmisc igraph lattice latticeExtra plyr RColorBrewer reshape2 scales soilDB sp vegan]; };
   sharx = derive2 { name="sharx"; version="1.0-5"; sha256="10sfjg6946jfk4051da0w1v89503av40wckqaabr12syf8kn0aw8"; depends=[dclone dcmle Formula]; };
-  shazam = derive2 { name="shazam"; version="0.1.9"; sha256="1dm553l1qwqajy5p13x3ms6x45ax33zh7b79iw6xx1chbrpalhmk"; depends=[alakazam ape diptest doParallel dplyr foreach ggplot2 igraph iterators kedd KernSmooth lazyeval MASS progress scales SDMTools seqinr stringi tidyr]; };
+  shazam = derive2 { name="shazam"; version="0.1.10"; sha256="1rhd2jh8s548z4p984l0cqn0hgdvnv4mgfbb82k5l4m9p2rsii81"; depends=[alakazam ape diptest doParallel dplyr foreach ggplot2 igraph iterators kedd KernSmooth lazyeval MASS progress scales SDMTools seqinr stringi tidyr]; };
   shelltrace = derive2 { name="shelltrace"; version="3.5.1"; sha256="1xgbavaa26185i6q3907ds3bzq4xrw027x1sw5vsybqrxdz04jiz"; depends=[bmp tiff xlsx]; };
   shiftR = derive2 { name="shiftR"; version="1.4"; sha256="12mb4b5zhiq7hfkpc9hgi004hqli1kkkzdy2169svwrjv7bfifrn"; depends=[]; };
   shiny = derive2 { name="shiny"; version="1.1.0"; sha256="12aw4kmf0j993fj4lpyqlyqzzn0bnniwd55w22p9pa0b3g6n9dbh"; depends=[crayon digest htmltools httpuv jsonlite later mime promises R6 rlang sourcetools xtable]; };
+  shiny_i18n = derive2 { name="shiny.i18n"; version="0.1.0"; sha256="15llwr4yrx6rlk32b92wcq3dn360y5cvy4mh2aqkza9ikcvlhcvv"; depends=[jsonlite yaml]; };
+  shiny_router = derive2 { name="shiny.router"; version="0.1.1"; sha256="0biwni6bk39qafvsh8w32crlgm4hf8r9kwkmnlc3w5za2x2fja4c"; depends=[magrittr shiny]; };
   shiny_semantic = derive2 { name="shiny.semantic"; version="0.2.1"; sha256="0m0f22qlmf7f2cf33myn72dm48yslqyx4kwzb96i78a3yz6a2awp"; depends=[htmltools htmlwidgets jsonlite magrittr purrr shiny]; };
-  shinyAce = derive2 { name="shinyAce"; version="0.3.1"; sha256="1hqgszbiv99dibhwr21v21ll4s2hjn3ccqdicsm0z3gk77bh8iyb"; depends=[jsonlite shiny]; };
+  shinyAce = derive2 { name="shinyAce"; version="0.3.2"; sha256="1fbk5i6w6cpam8s3acf4bgdp8hajn4digjjix3i6i4q3p2rvn6zx"; depends=[jsonlite shiny]; };
   shinyBS = derive2 { name="shinyBS"; version="0.61"; sha256="0rhim4mbp4x9vvm7xkmpl7mhb9qd1gr96cr4dv330v863ra2kgji"; depends=[htmltools shiny]; };
   shinyDND = derive2 { name="shinyDND"; version="0.1.0"; sha256="0nkvz4hmjzmxlzj4vkjrdy8xlbxapg1amk180irgvwicqldi4jpm"; depends=[htmltools shiny]; };
-  shinyFeedback = derive2 { name="shinyFeedback"; version="0.0.4"; sha256="14lvr99nfldlr101ysmpwz0zw0bjvr6b7lfm0msx57ymh6gjzg3n"; depends=[digest shiny]; };
-  shinyFiles = derive2 { name="shinyFiles"; version="0.7.0"; sha256="1bs1dj84scg4gkrdlw1jvmnwckcjcdpzc8drwmr8h6cxk3yklijc"; depends=[htmltools jsonlite shiny]; };
+  shinyFeedback = derive2 { name="shinyFeedback"; version="0.1.0"; sha256="01qp75c5dsvc4xs1id1yhn81gmjl0hnjz8msf8mkvf4ifqal563f"; depends=[digest shiny]; };
+  shinyFiles = derive2 { name="shinyFiles"; version="0.7.1"; sha256="1cbg09l7w2zbgxb4qjm9p873p0lzrihlzsk5xxi3cpxdckn6zsrm"; depends=[fs htmltools jsonlite shiny tibble]; };
   shinyHeatmaply = derive2 { name="shinyHeatmaply"; version="0.1.0"; sha256="1vl80vp7yslnh0dvcrpysfn5rndjavphy31y15546q7ax7d0fn6v"; depends=[dplyr DT heatmaply htmltools htmlwidgets jsonlite plotly RColorBrewer readxl shiny viridis xtable]; };
   shinyKGode = derive2 { name="shinyKGode"; version="1.0.5"; sha256="004zwz4kqfijzvvwkq8v1gi25w1wrdlg8230g93w36gbi6cl2vk1"; depends=[ggplot2 gridExtra KGode mvtnorm pracma pspline reshape2 shiny shinyjs XML]; };
   shinyLP = derive2 { name="shinyLP"; version="1.1.2"; sha256="1sjcll10ciq6pj9h8c6ybjqp8763wc423hddlalcblxxpajf6avz"; depends=[shiny]; };
   shinyRGL = derive2 { name="shinyRGL"; version="0.1.0"; sha256="07llg1yg5vmsp89jk60ly695zvxky6n06ar77mjxzlyc294akwmy"; depends=[rgl shiny]; };
   shinyShortcut = derive2 { name="shinyShortcut"; version="0.1.0"; sha256="101wz9s4rk7fbaqgm0r2v3v8za20vdxwq4vhkz8xr7y5pr65sxiq"; depends=[]; };
   shinyTime = derive2 { name="shinyTime"; version="0.2.1"; sha256="0gpa6kypchvvlq71nnlilciclcrhaa488prjz46sddrsxjy09mp7"; depends=[htmltools shiny]; };
-  shinyTree = derive2 { name="shinyTree"; version="0.2.2"; sha256="08n2s6pppbxn23ijp6vms609p4qwlmfh9g0k5hdfqsqxjrz1nndi"; depends=[shiny]; };
+  shinyTree = derive2 { name="shinyTree"; version="0.2.6"; sha256="1rw6nwvjsmzfj5fprvg0fasfq079pmdid6vv6rj11wvy7rf40y6j"; depends=[jsonlite shiny]; };
   shinyWidgets = derive2 { name="shinyWidgets"; version="0.4.3"; sha256="070yy6vq9w97bz17nxbc2z65v05k50hr24dxfcld994bw0910ldx"; depends=[htmltools jsonlite shiny]; };
   shinyaframe = derive2 { name="shinyaframe"; version="1.0.1"; sha256="1flhgsm4q7p5acb41v73pf8ni92y9dwdppxjb9czlz1sxwf03p1s"; depends=[htmltools htmlwidgets shiny]; };
   shinyalert = derive2 { name="shinyalert"; version="1.0"; sha256="0ngmpbzw6fw1gs6sv9m3xv2c9bmrxg0bs6lnvxn8hm8cwr4440xi"; depends=[digest shiny]; };
-  shinyanimate = derive2 { name="shinyanimate"; version="0.1.0"; sha256="0vbzfcw4d0fvmpdn2pjbsl3najikhm6p60w5vxc0d3x7d8sfq57z"; depends=[shiny]; };
+  shinyanimate = derive2 { name="shinyanimate"; version="0.2.0"; sha256="04knbwv8ls23ibwj0gnnpmvnich9nbakx4pjfawghwlm75z9bpdk"; depends=[shiny]; };
   shinybootstrap2 = derive2 { name="shinybootstrap2"; version="0.2.1"; sha256="17634l3swlvgj1sv56nvrpgd6rqv7y7qjq0gygljbrgpwmfj198c"; depends=[htmltools jsonlite shiny]; };
   shinycssloaders = derive2 { name="shinycssloaders"; version="0.2.0"; sha256="1bpzsm7m7c366sjl1qndp4m5dg2vlm68rjgdy9n1ija9xbp0r2g4"; depends=[digest glue shiny]; };
   shinycustomloader = derive2 { name="shinycustomloader"; version="0.9.0"; sha256="1klx71vr26g0gjf6hbiia1qidqii5d467i1sdjvlrg1hxdcggqff"; depends=[glue shiny]; };
-  shinydashboard = derive2 { name="shinydashboard"; version="0.7.0"; sha256="10yqcqqcxgfqwkmscqwvvgr710im583qsqnsqkfpisjvkqp10yqb"; depends=[htmltools shiny]; };
-  shinydashboardPlus = derive2 { name="shinydashboardPlus"; version="0.5.0"; sha256="0wj388lys7jlh45il6vvln0bpjg1rr91xyypzz55hp46r8z31vl2"; depends=[htmltools shiny shinydashboard]; };
-  shinyhelper = derive2 { name="shinyhelper"; version="0.3.0"; sha256="1ypd9wc0h9yfh4awjmjn952g2cfsgcyrm25zk575b17jrkjl5skj"; depends=[markdown shiny]; };
-  shinyjqui = derive2 { name="shinyjqui"; version="0.3.0"; sha256="0x7pyb897apmdfpys2kc7bkaa8i4a9rlmdlmlps1n8cxj8kx3dal"; depends=[htmltools htmlwidgets jsonlite shiny]; };
+  shinydashboard = derive2 { name="shinydashboard"; version="0.7.1"; sha256="0khac8b27q3swdw07kl609hm0fjfjsjv591b388q99mqqr2rk92i"; depends=[htmltools promises shiny]; };
+  shinydashboardPlus = derive2 { name="shinydashboardPlus"; version="0.6.0"; sha256="01yfijdh6ynxzd45bidywvdk0rlx7fzfzq5pbapbvknb7sbasi0y"; depends=[htmltools shiny shinydashboard]; };
+  shinyhelper = derive2 { name="shinyhelper"; version="0.3.1"; sha256="1z3wb3vdpz9pcn6rfmpbxky05cf8bxldhpwzldrmhn03spz3n987"; depends=[markdown shiny]; };
+  shinyjqui = derive2 { name="shinyjqui"; version="0.3.2"; sha256="1a73vsq1wc3xf14y64hkgnk5jgxj98b8aj3g0fs7mgayar3an5g0"; depends=[htmltools htmlwidgets jsonlite shiny]; };
   shinyjs = derive2 { name="shinyjs"; version="1.0"; sha256="113zpijri0l80rlgrvqn6bxk0sdqgl79h7yhja2p76f9dc9i2sr8"; depends=[digest htmltools jsonlite shiny]; };
   shinymaterial = derive2 { name="shinymaterial"; version="0.5.3"; sha256="0lddw626mlb6vv474vv22pbjlwl1hgnjs8py3a30d84m94wg7p3z"; depends=[jsonlite shiny]; };
   shinystan = derive2 { name="shinystan"; version="2.5.0"; sha256="18alf5kiqw7y2l6m5nxxizwc2znsf9frxfsqhvgcad8hld9cbya5"; depends=[bayesplot colourpicker DT dygraphs ggplot2 gridExtra gtools markdown reshape2 rsconnect rstan shiny shinyjs shinythemes threejs xtable xts]; };
@@ -11208,7 +11705,7 @@ in with self; {
   showimage = derive2 { name="showimage"; version="1.0.0"; sha256="1c0x3iqjdjsz3cdhc02b3qm2pwxjr1q2k87jwvxj9lnzzw81f1pl"; depends=[png]; };
   showtext = derive2 { name="showtext"; version="0.5-1"; sha256="0zb9h6frw580cql0nbkvfb0jajq6k4yhqaifvz8cpysd32dk35wm"; depends=[showtextdb sysfonts]; };
   showtextdb = derive2 { name="showtextdb"; version="2.0"; sha256="1qwwj9x2jvadvwn60h75k99c9xi7yhqjsgaakahz5paxgj583bsh"; depends=[sysfonts]; };
-  shp2graph = derive2 { name="shp2graph"; version="0-4"; sha256="13hpj2yjai3yf8q6dnhpdqzsw4nkdpi06fxxdgn82ycx0sp7zk4v"; depends=[igraph maptools sp]; };
+  shp2graph = derive2 { name="shp2graph"; version="0-5"; sha256="1l9mg98hkb0bvr5dzd2p26g8mw5hqjxrym2gmbm10kyapvccfk56"; depends=[igraph maptools sp]; };
   shrink = derive2 { name="shrink"; version="1.2.1"; sha256="0pd967wsys8fd7gyvr9y08km118yamfk5c1a1i2k8nr2ifpqmy0w"; depends=[MASS mfp rms survival]; };
   shuffle = derive2 { name="shuffle"; version="1.0.1"; sha256="0aqb11h340picx7z2jg3k46l3pr6fkknlpyzc0z89hhrc90pss48"; depends=[]; };
   shuffleCI = derive2 { name="shuffleCI"; version="0.1.0"; sha256="1n9k28m1fcnw1my9a7v0gy9waygd48lab45vj9k2wwijbc325zai"; depends=[plotrix]; };
@@ -11216,25 +11713,26 @@ in with self; {
   siar = derive2 { name="siar"; version="4.2"; sha256="1c4z72jr81dzkp9xqyrrkwjsalvvksl67pnbaadkc52v84fhzx3r"; depends=[bayesm coda hdrcde MASS mnormt spatstat]; };
   sicegar = derive2 { name="sicegar"; version="0.2.2"; sha256="0fnr0wv8zbhs2i5y1kqyvhm0kzisc68ys3iy0wxwbdj3bnfgzj70"; depends=[dplyr fBasics ggplot2 minpack_lm]; };
   sideChannelAttack = derive2 { name="sideChannelAttack"; version="1.0-6"; sha256="1xcsy1h8gc8a4f9nzs7zv8x6v55g1pg8vy1kg64iqxm0gnz2f20l"; depends=[ade4 corpcor infotheo MASS mmap]; };
-  sidier = derive2 { name="sidier"; version="4.0.2"; sha256="1zzlgd20aw2asbsb3g9m5gvlmmgkai3bqrxyn48mphc2ncl4y7w0"; depends=[ape ggmap ggplot2 gridBase igraph network]; };
+  sidier = derive2 { name="sidier"; version="4.0.3"; sha256="0pfzx0a5f597iqigq9xidm9b9xv18zaiqa35yp4xlk1y7gv0nj6c"; depends=[ape ggmap ggplot2 gridBase igraph network]; };
   sidrar = derive2 { name="sidrar"; version="0.2.4"; sha256="1zwxafc4xaa4386a9jdg3gwflpdxql3f33bkqx1l2yl30x3517rw"; depends=[dplyr magrittr RCurl rjson rvest stringr tidyr xml2]; };
   sievetest = derive2 { name="sievetest"; version="1.2.3"; sha256="17qrm7axvlr2yzp8brbibp26f8qdpqm85hc2kjzxm5zqwfvd6dfs"; depends=[]; };
   sig = derive2 { name="sig"; version="0.0-5"; sha256="084wwpj5mnmq4k98ijbv23z80sj4axadc7c6hn3917dazsaa6ngn"; depends=[]; };
-  sigQC = derive2 { name="sigQC"; version="0.1.20"; sha256="1s0z5pd8183q1v5pn07zwxckafhq0rhh7fzzny7xpjs79r50l9ii"; depends=[biclust circlize class cluster ComplexHeatmap fmsb gplots gridGraphics GSVA KernSmooth lattice MASS mclust moments nnet RankProd]; };
+  sigQC = derive2 { name="sigQC"; version="0.1.21"; sha256="0794xvkz4fd81gqqpxzn5njv3d34nfxy0jl5zpixlnz0ap4c9vhx"; depends=[biclust circlize class cluster ComplexHeatmap fmsb gplots gridGraphics GSVA KernSmooth lattice MASS mclust moments nnet RankProd]; };
   sigclust = derive2 { name="sigclust"; version="1.1.0"; sha256="0151v7lr4n4yyn93j0s06gzc9jh9xhdgvfw6kvpfy24jl6wdii7g"; depends=[]; };
   sigmaNet = derive2 { name="sigmaNet"; version="1.1.0"; sha256="1i0xikwad9kiyrqxi1klkc4h4hyqfkxr388sw4mrx9pswfpbv3xr"; depends=[htmlwidgets igraph jsonlite RColorBrewer]; };
+  sigmajs = derive2 { name="sigmajs"; version="0.1.1"; sha256="05fkwm0lkk3mg59ldc68y8sc58223zw1c3vgvxn09100bf6kfvyr"; depends=[crosstalk dplyr htmltools htmlwidgets igraph jsonlite magrittr purrr shiny]; };
   sigmoid = derive2 { name="sigmoid"; version="0.3.0"; sha256="1sa6nmip3fizdk3r47pvx0h3qldn267arpmid0wa1pb7k5j2g682"; depends=[]; };
   signal = derive2 { name="signal"; version="0.7-6"; sha256="1vsxramz5qd9q9s3vlqzmfdpmwl2rhlb2n904zw6f0fg0xxjfq3b"; depends=[MASS]; };
   signalHsmm = derive2 { name="signalHsmm"; version="1.4"; sha256="1plyvx0pdid4zydxjwph6v96c8ilzgn55vcdszkslp3a4s2sns65"; depends=[Rcpp seqinr shiny]; };
   signmedian_test = derive2 { name="signmedian.test"; version="1.5.1"; sha256="05n7a4h2bibv2r64cqschzhjnm204m2lm1yrwxvx17cwdp847hkm"; depends=[]; };
-  sigora = derive2 { name="sigora"; version="2.0.1"; sha256="1sgjafr2f7carwnvp0vsvp80jn2bzwlkay38ch63qk9gapsh4imh"; depends=[]; };
-  sigr = derive2 { name="sigr"; version="0.2.7"; sha256="0fdqlwblinb2dqlmcr7p679ppjh73aykgsmjffyaz0liiyk0zsc7"; depends=[wrapr]; };
+  sigora = derive2 { name="sigora"; version="3.0.1"; sha256="1pz9jibxjvvbc0wmd7sj2fss6hd8h1fvcg8vg72qwqvfy3f9jdry"; depends=[]; };
+  sigr = derive2 { name="sigr"; version="1.0.2"; sha256="1477xc3ba4zm0z73aqyrqd47x84184vp4v0zkzfxjw4y7rkw1anh"; depends=[wrapr]; };
   siland = derive2 { name="siland"; version="1.0"; sha256="0zqwslg0vak22q475azwank81wr4kfx33h21w84lsg7iihrb08nv"; depends=[lme4 raster rgdal sp]; };
   sim1000G = derive2 { name="sim1000G"; version="1.39"; sha256="1qxl7lsdsd4skn6x8iw7jx60ly0rwsj27yh5yiqmhxa34jpyjg0m"; depends=[hapsim MASS readr stringr]; };
   simEd = derive2 { name="simEd"; version="1.0.3"; sha256="1yq0qblrz0zddx682rzwdaa0k0r223i123la7wbp73spnn38g4br"; depends=[rstream]; };
   simFrame = derive2 { name="simFrame"; version="0.5.3"; sha256="154d4k6x074ib813dp42l5l8v81x9bq2c8q0p5mwm63pj0rgf5f3"; depends=[lattice Rcpp]; };
   simIReff = derive2 { name="simIReff"; version="1.0"; sha256="0yi43splda8chnh4bq5x6chbrl5c0y9sv1k2m31763da0czayall"; depends=[bde extraDistr ks MASS np rvinecopulib truncnorm]; };
-  simLife = derive2 { name="simLife"; version="0.3"; sha256="0bqhixr4zg7mwgxdsjk0h5a82dyfkhiv9xafw43w2bpnmyxywdia"; depends=[splancs unfoldr]; };
+  simLife = derive2 { name="simLife"; version="0.5.1"; sha256="16idgxvc06m10k67y86agcdsv79ndi1d05zrajlnd5fap7n1w3d5"; depends=[splancs]; };
   simMP = derive2 { name="simMP"; version="0.17.3"; sha256="1pzg79dd08ds3pfzxnk9h95gaibicv00mnm0jb4i8v5is4gzrdhr"; depends=[Biostrings BSgenome doParallel foreach GenomeInfoDb GenomicRanges IRanges XVector]; };
   simMSM = derive2 { name="simMSM"; version="1.1.41"; sha256="04icijrdc269b4hwbdl3qz2lyxcxx6z63y2wbak1884spn6bzbs8"; depends=[mvna survival]; };
   simPATHy = derive2 { name="simPATHy"; version="0.2"; sha256="0ai5wmjz8k0glbwkclgg3m3ncsjghja4iys2mn1psn3r8gxk79yc"; depends=[ggm graph gRbase htmlwidgets igraph mvtnorm qpgraph R_utils shiny shinydashboard]; };
@@ -11244,18 +11742,18 @@ in with self; {
   simTool = derive2 { name="simTool"; version="1.1.0"; sha256="121nv0s14jzxgcmj2fsj1k0msziknwbix2a49f7igic2l8yv869p"; depends=[dplyr plyr purrr reshape tibble tidyr]; };
   simba = derive2 { name="simba"; version="0.3-5"; sha256="14kqxqavacckl5s1518iiwzrmlgbxz1lxy33y8c9qq7xaln41g9h"; depends=[vegan]; };
   simboot = derive2 { name="simboot"; version="0.2-6"; sha256="0bgibrqb9j62p1chldi1lvdsgc6sgsr7afyq4lvyrc2h861f3j9d"; depends=[boot mvtnorm]; };
-  simcausal = derive2 { name="simcausal"; version="0.5.4"; sha256="19mqabxqz2mvfhslbln5vsnlrnmgcfmgp7ypf5k2yd03755b0k4b"; depends=[assertthat data_table igraph Matrix R6 stringr]; };
   simctest = derive2 { name="simctest"; version="2.5"; sha256="038ipxww0n09sh8al5isbm1fikr8kazwxn9cj2d0wgm6cdpy681n"; depends=[]; };
   simdistr = derive2 { name="simdistr"; version="1.0.0"; sha256="0r7qfrq4vcjqrzajc6xmn0rrkinqwbr8cqghgp4iklbhsjbk2xfl"; depends=[]; };
   simecol = derive2 { name="simecol"; version="0.8-12"; sha256="06zw9xhj8jwhmqwxxbj8hgz9cxrw1b4syy6z79aawv9cg1bnwfhf"; depends=[deSolve minqa]; };
   simest = derive2 { name="simest"; version="0.4"; sha256="1wp08dkbshn5parq69d7iizp4g16qzpdim37kcg09pgsc3aghwaj"; depends=[cobs nnls]; };
   simex = derive2 { name="simex"; version="1.7"; sha256="0dmyxhg3bk23y08xbgwlg791pcl3131im3jkh9x5pjqczfjvim0a"; depends=[]; };
   simexaft = derive2 { name="simexaft"; version="1.0.7"; sha256="13w9m35qrrp8kkz4gqp7fg9jv8fs99y19n21bdxsd3f5mlkbvqgl"; depends=[mvtnorm survival]; };
-  simglm = derive2 { name="simglm"; version="0.7.0"; sha256="1p29v8y3ahdkid35ky9sbj5227cvj0nn0ljzjpliyqwbkmxpncmj"; depends=[broom dplyr Matrix purrr rlang]; };
-  simmer = derive2 { name="simmer"; version="3.8.0"; sha256="0d1m93ffnajvkf3wiqvbim5l1i10k30pr702wyazrg6b0c2kybkf"; depends=[BH codetools magrittr R6 Rcpp]; };
-  simmer_bricks = derive2 { name="simmer.bricks"; version="0.1.0"; sha256="1sb1ayh56sbgs4p0r3frjjfn4vcdr43xm85lvb9aqk3wmj2lddqy"; depends=[simmer]; };
-  simmer_plot = derive2 { name="simmer.plot"; version="0.1.13"; sha256="0afp4il95dmdgw815rk0c3cyf56gli237v4i716l4agag5l1rp60"; depends=[DiagrammeR dplyr ggplot2 scales simmer tidyr]; };
+  simglm = derive2 { name="simglm"; version="0.7.1"; sha256="1y5j0a09svxq7gygw02l906pgs0lwv26qsikjy8vf5rmds58mcfd"; depends=[broom dplyr Matrix purrr rlang]; };
+  simmer = derive2 { name="simmer"; version="4.0.1"; sha256="1vsg4540id6006pp7wdfwz3s7ny6adc3z9ynaw1qad2z0xnxcn6y"; depends=[BH codetools magrittr R6 Rcpp]; };
+  simmer_bricks = derive2 { name="simmer.bricks"; version="0.2.0"; sha256="1i4vhklky7d837z35859jp5q43aabcw5zk3936017awdsn4fkn9r"; depends=[simmer]; };
+  simmer_plot = derive2 { name="simmer.plot"; version="0.1.14"; sha256="0w72064h8s6b2fhz5nv3i6c86wvcxfvhybb96vh5ykr1xkqpybbh"; depends=[DiagrammeR dplyr ggplot2 scales simmer tidyr]; };
   simmr = derive2 { name="simmr"; version="0.3"; sha256="18ycrd7qbz7frvd3bgbqaaapslw1jw89fy3np5qyb9sswyk08w9m"; depends=[boot coda compositions ggplot2 MASS reshape2 rjags viridis]; };
+  simode = derive2 { name="simode"; version="1.1.1"; sha256="1v72ja8jf33biljqc64s35iv2q8igk62z852y5fxwssckm1nhcdd"; depends=[deSolve pracma quadprog]; };
   simpleCache = derive2 { name="simpleCache"; version="0.3.1"; sha256="14jrsfxcrndfgi7yl5frfsyixxkhagc7cfav8h6mf6apfxx0v1ls"; depends=[]; };
   simpleNeural = derive2 { name="simpleNeural"; version="0.1.1"; sha256="0rm6kvz1mppvgcvwsgg3nz6ci37l95ins64g0jh4rw6lfmy0grjc"; depends=[]; };
   simpleRCache = derive2 { name="simpleRCache"; version="0.3.2"; sha256="0ldmxa5rw1kcb24swnk8s471ww11jfbscynaahnnsi0zzqmhwirk"; depends=[digest]; };
@@ -11268,43 +11766,45 @@ in with self; {
   simrel = derive2 { name="simrel"; version="1.0-1"; sha256="0905rjqh8c08vyg090h0i7sx89vdryignslldzfz2r5yrszl4ga8"; depends=[FrF2 sfsmisc]; };
   simsalapar = derive2 { name="simsalapar"; version="1.0-10"; sha256="1q7kh44xl7q48vpqbyrp85my6x97l4fqq36bry8vg3k5riihirzf"; depends=[colorspace gridBase sfsmisc]; };
   simsem = derive2 { name="simsem"; version="0.5-14"; sha256="1sg1zmngpviqpbsy8kxnw4f4x93gy3gh02ykmcw8j9falfnd7g6i"; depends=[lavaan]; };
-  simstudy = derive2 { name="simstudy"; version="0.1.9"; sha256="0lix46xi02sfkd3nslqgcbnyfpgqhdz8kj5hh85b6ajly4hgw103"; depends=[data_table mvnfast Rcpp]; };
+  simstandard = derive2 { name="simstandard"; version="0.1.0"; sha256="09jggrcfjjyr248rjr3nfrwmpr843z8h379cyxkl302s9g1qz57s"; depends=[lavaan mvtnorm tibble]; };
+  simstudy = derive2 { name="simstudy"; version="0.1.10"; sha256="0wc3464np94m429jrwdna3im1z2r2yq2xxxr212ndw6is0bb5w9s"; depends=[data_table mvnfast mvtnorm Rcpp]; };
   simsurv = derive2 { name="simsurv"; version="0.2.2"; sha256="1dfn156mm08l1cyp6wy69rd9a2lyy7qlbqa59jq35n9fhpjbrif0"; depends=[]; };
   simtimer = derive2 { name="simtimer"; version="3.0.0"; sha256="0hfp652s97dz07fs92gfsaiwd6pwg95qsvr6qjwj1k5d3h6hzf8y"; depends=[]; };
-  simukde = derive2 { name="simukde"; version="1.0.0"; sha256="1v4shnyba05mh0qaylivcjby6niz2yc4zb67qfbycifbj0cl14vh"; depends=[ks mvtnorm]; };
+  simukde = derive2 { name="simukde"; version="1.1.0"; sha256="0g4qb57q1g9ixl70zwiw8y934gcr421xmz4dl515lxzfzk0605fc"; depends=[ks MASS mvtnorm]; };
   simulator = derive2 { name="simulator"; version="0.2.0"; sha256="18x0c9bf9anbykq9f46fxnnx7g36bh01s4cdmrn7mdygs6ac9c8z"; depends=[magrittr]; };
   simule = derive2 { name="simule"; version="1.3.0"; sha256="0jzyk1r2jfs7qivmy9x44c5bagy55jpy3hf0xpl9xnk409c3y2wd"; depends=[igraph lpSolve pcaPP]; };
   sinaplot = derive2 { name="sinaplot"; version="1.1.0"; sha256="0zfq6l8wjvdj7rndsfyh0a2xjlxmn2ij1q50hg3xjfpwrjxcsck8"; depends=[plyr]; };
-  sinew = derive2 { name="sinew"; version="0.3.5.1"; sha256="0fp5afjnkah3ig1c1fy23zlfxkfg590jai8iqf5s8wl8r4s0ywgm"; depends=[miniUI rstudioapi shiny sos stringi yaml]; };
+  sindyr = derive2 { name="sindyr"; version="0.2.1"; sha256="0977qb9f2247y6bzlsp9lqfbmncq2prqr57myrgd6f60jc09n3mj"; depends=[arrangements crqa igraph matrixStats pracma]; };
+  sinew = derive2 { name="sinew"; version="0.3.8"; sha256="1ggx7wgmgnsv69nnc55mg9g7rzjv5m23sygz7x8q68pybmjr7fc1"; depends=[cli crayon miniUI rematch2 rstudioapi shiny sos stringi yaml]; };
   sinib = derive2 { name="sinib"; version="1.0.0"; sha256="08x2a5hn41vcsai3r36w1kgzka4ks53pkp6dxn90bsqh40ydb0db"; depends=[]; };
-  siplab = derive2 { name="siplab"; version="1.2"; sha256="0r7gk9qsmbc3ln67cb8p87bq3s2rx6fbavlly1fpzqqv2isf5pq9"; depends=[spatstat]; };
+  siplab = derive2 { name="siplab"; version="1.3"; sha256="1wl7i8i24mwmndkfjbk38kn49x4hrcs52sq1hfw8crqa20knaf12"; depends=[spatstat]; };
   sirad = derive2 { name="sirad"; version="2.3-3"; sha256="0vhmk2fmq4797gj6c8803zw1ipmdxfvdfgi2bygzxbn5bqd4da2n"; depends=[raster zoo]; };
-  sirt = derive2 { name="sirt"; version="2.6-9"; sha256="06iz4dxlsxdfgmn52pyiyng0bbxffc5b7sszwbzq5i64ad1j0d48"; depends=[CDM coda lavaan lavaan_survey MASS mirt mvtnorm Rcpp RcppArmadillo sfsmisc survey TAM]; };
+  sirt = derive2 { name="sirt"; version="2.7-50"; sha256="1l1y65qr1ziapszm4n309q8gahcf55jfi7i2jj5v8wrg2b3g660w"; depends=[CDM coda lavaan lavaan_survey MASS mirt mvtnorm Rcpp RcppArmadillo sfsmisc survey TAM]; };
   sisVIVE = derive2 { name="sisVIVE"; version="1.4"; sha256="1vh53irxgk8ahw52cdqbbm89dvmzyf54izg4lm8a3v92k5p6nzwz"; depends=[lars]; };
   sisal = derive2 { name="sisal"; version="0.46"; sha256="00szc3l69i0cksxmd0lyrs4p6plf05sl4vxs3nl4gkbja5y4lvpc"; depends=[boot digest lattice mgcv R_matlab R_methodsS3]; };
   sisus = derive2 { name="sisus"; version="3.9-13"; sha256="0lz9ww07dvdx6l3k5san8gwq09hycc3mqwpgzmr2ya9z8y27zadr"; depends=[coda gdata gtools MASS moments polyapost rcdd RColorBrewer]; };
   sitar = derive2 { name="sitar"; version="1.1.0"; sha256="1a2x6igzq0i1vac54xyiq14vzx0m20431nv7aw0anv0lss7xy6r8"; depends=[dplyr nlme quantreg rlang tibble]; };
   sitmo = derive2 { name="sitmo"; version="2.0.0"; sha256="11mzkdh01cfazxqxxlhm0ifbiggpw54k5n9qpz3vxbq10v9720h9"; depends=[Rcpp]; };
   sitools = derive2 { name="sitools"; version="1.4"; sha256="0c0qnvsv06g6v7hxad96fkp9j641v8472mbphvaxa60k3xc7ackb"; depends=[]; };
-  sitree = derive2 { name="sitree"; version="0.1-3"; sha256="1rs109sxvmsbx8w75iifbc14z685k9brk7fgfy0mjgkcxszafjwk"; depends=[data_table lattice latticeExtra]; };
+  sitree = derive2 { name="sitree"; version="0.1-4"; sha256="0ypn9y1kighvh17yj1v83dkj973vqgzbr5lmkl761lam3m1fglq0"; depends=[data_table lattice latticeExtra]; };
   sitreeE = derive2 { name="sitreeE"; version="0.0-2"; sha256="0w4gbdjphanfy614jv4zp70kl901zz5hblk35lyv7rjxifq5bpx0"; depends=[sitree]; };
   sivipm = derive2 { name="sivipm"; version="1.1-3"; sha256="1l0j1bi38s09ax4kwikk615lyd074gzg1aa1j2jfmhr3igannm3z"; depends=[seqinr]; };
-  sizeMat = derive2 { name="sizeMat"; version="0.3.0"; sha256="0766wxcc1980ivlib2saagl20y9dm0ar7i43qcqk2jpdbbaky33z"; depends=[MASS matrixStats mcmc MCMCpack]; };
-  sjPlot = derive2 { name="sjPlot"; version="2.4.1"; sha256="0aazxrqsbp5jsd5yfm6hrx17rmlqbh5vs314xms7g620aj383zrh"; depends=[arm broom dplyr effects forcats ggeffects ggplot2 glmmTMB knitr lme4 magrittr MASS merTools modelr nlme psych purrr rlang scales sjlabelled sjmisc sjstats tibble tidyr tidyselect]; };
+  sizeMat = derive2 { name="sizeMat"; version="1.0.0"; sha256="05dw4hgpw5msgy5cabf5dixr6ma66i9wz9wlajihqkpbg134jz1k"; depends=[MASS matrixStats mcmc MCMCpack]; };
+  sjPlot = derive2 { name="sjPlot"; version="2.6.1"; sha256="13qvw2s3r96qfi8kfsn76m050ccnmckl31a9qv94xws8da99v2fk"; depends=[broom dplyr forcats ggeffects ggplot2 glmmTMB knitr lme4 magrittr MASS modelr nlme psych purrr rlang scales sjlabelled sjmisc sjstats tidyr]; };
   sjdbc = derive2 { name="sjdbc"; version="1.6.0"; sha256="17ncgj2s2pjn3w3c1dgxv8g7y17h4p78iic86gsj2ahn0xpsmkcc"; depends=[rJava]; };
-  sjlabelled = derive2 { name="sjlabelled"; version="1.0.11"; sha256="1bkjv36v7vwvwfal9qwfyvirnv72r080cq333q161bnq6vcp648y"; depends=[broom dplyr haven magrittr prediction purrr rlang snakecase tibble tidyselect]; };
-  sjmisc = derive2 { name="sjmisc"; version="2.7.3"; sha256="1d588cpgnyhxyclchiv5fx0vi155mkh7ac252swg5fp4752skff7"; depends=[broom crayon dplyr haven magrittr pillar purrr rlang sjlabelled stringdist stringr tibble tidyr tidyselect]; };
-  sjstats = derive2 { name="sjstats"; version="0.15.0"; sha256="1gy37k3ziyxlf336b9s5j2shp9qapwnr8ya8sfjyrs56naai411b"; depends=[bayesplot broom coin crayon dplyr emmeans glmmTMB lme4 lmtest magrittr MASS Matrix modelr nlme prediction purrr pwr rlang sandwich sjlabelled sjmisc tibble tidyr tidyselect]; };
+  sjlabelled = derive2 { name="sjlabelled"; version="1.0.14"; sha256="0ayfzhm9bwjfaarq5z0gvn9kapjwj3532azgin97nr5fnjdhvgaw"; depends=[broom dplyr haven magrittr prediction purrr rlang snakecase]; };
+  sjmisc = derive2 { name="sjmisc"; version="2.7.5"; sha256="05fjqfr2rfk11065zqkzb9mbqd6mgdkw9jdhq3by425a7f8m2dcg"; depends=[broom crayon dplyr haven magrittr purrr rlang sjlabelled stringdist stringr tidyr]; };
+  sjstats = derive2 { name="sjstats"; version="0.17.1"; sha256="0s9b0xr8gmcm0kh48jkwk8ns0lqknd8kpys4f7czf0xwzmcx2n1z"; depends=[bayesplot broom coin crayon dplyr emmeans glmmTMB lme4 magrittr MASS Matrix modelr nlme purrr pwr rlang sjlabelled sjmisc tidyr]; };
   skda = derive2 { name="skda"; version="0.1"; sha256="0a6mksr1d0j3pd0kz4jb6yh466gvl4fkrvgvnlmvivpv6b2gqs3q"; depends=[]; };
   skeleSim = derive2 { name="skeleSim"; version="0.9.8"; sha256="1wxdl30cy8vr1cd0wcjxyklp6crw4bv8r77ma2dkzmxm2ma5jw92"; depends=[adegenet ape hierfstat igraph markdown pegas reshape2 rmetasim shiny shinyFiles strataG swfscMisc]; };
   skeletor = derive2 { name="skeletor"; version="1.0.4"; sha256="1jfbfbkjx8mdwamsrkhvcnyn470in702vgcyw3g2dbgs84gl29q8"; depends=[]; };
   skellam = derive2 { name="skellam"; version="0.2.0"; sha256="0r5wbs5h7xc3k2vjxd4axwnxr9cmwm008fcyj1vyixkg8fa680gx"; depends=[]; };
   skewt = derive2 { name="skewt"; version="0.1"; sha256="1xm00zfzjv53cq9drfcx7w2ri5dwsq7kajrk2hc1mvw0b6s4x2ix"; depends=[]; };
   skimr = derive2 { name="skimr"; version="1.0.3"; sha256="1c6szryq4w6gipmz7s5nn5936dbwly013czlcl6fky2yrhhjf25v"; depends=[cli dplyr knitr magrittr pander purrr rlang stringr tibble tidyr tidyselect]; };
-  sklarsomega = derive2 { name="sklarsomega"; version="1.0"; sha256="0zyaycsbi4nnqx80lvipa43zphc032gw8bmxrx4blqb67xlfhp98"; depends=[hash LaplacesDemon Matrix numDeriv spam]; };
+  sklarsomega = derive2 { name="sklarsomega"; version="2.0"; sha256="05ar391bsaixv83dah3qzfi50avsjhn85niyq5n05sb8d5943z9h"; depends=[extraDistr hash LaplacesDemon Matrix mcmcse numDeriv spam]; };
   skm = derive2 { name="skm"; version="0.1.5.4"; sha256="06g3bdncq2r56d8k3dr87gqnibypbsps0gj4jxkw9q1sq1yaff3v"; depends=[data_table magrittr plyr Rcpp RcppArmadillo RcppParallel]; };
   skmeans = derive2 { name="skmeans"; version="0.2-11"; sha256="1a8nwlym6pf0z13nnw1id2wls9lq788860yhjaqd56c3slzfsymn"; depends=[clue cluster slam]; };
-  skpr = derive2 { name="skpr"; version="0.49.1"; sha256="0qsqa9lbrch5vs0hfp6k8vcrh0xgcjm23lpi5prrdh3h93lqjhxf"; depends=[doParallel doRNG foreach iterators kableExtra knitr lme4 nlme Rcpp RcppEigen rintrojs shiny shinythemes survival]; };
+  skpr = derive2 { name="skpr"; version="0.56.1"; sha256="110qlb4ksp7c6ipv2w445ziwykqqbvs188gkg6sclb4rnzjy4lix"; depends=[car doParallel doRNG foreach future iterators kableExtra knitr lme4 magrittr nlme promises Rcpp RcppEigen rintrojs shiny shinyjs shinythemes survival viridis]; };
   skynet = derive2 { name="skynet"; version="1.2.2"; sha256="1k6909fm40g6ianzjzbrv93x0fx2l8lnwl38krb7r50g1yk7lnrd"; depends=[data_table dplyr ggplot2 ggrepel igraph maps stringr]; };
   skyscapeR = derive2 { name="skyscapeR"; version="0.2.2"; sha256="08h3vvn9zglw3xrl0xpyj95r1n3v6lk835a4nbanxdvi21mgpi77"; depends=[astrolibR doParallel foreach MESS numDeriv oce plotrix png pracma RColorBrewer rootSolve]; };
   slackr = derive2 { name="slackr"; version="1.4.2"; sha256="1vm2h5fzcss3xx1annx68wrvv6c0s6h2ci0bipxmdl9amdaqw85w"; depends=[dplyr ggplot2 httr jsonlite]; };
@@ -11315,22 +11815,24 @@ in with self; {
   slickR = derive2 { name="slickR"; version="0.2.4"; sha256="14y4rwa450xqw6prdgp2l7xs9vv6zqbxwg7hc3hjgq47jy8qsdm1"; depends=[base64enc htmltools htmlwidgets xml2]; };
   slim = derive2 { name="slim"; version="0.1.1"; sha256="0x9bk6w6lmw15s85gw9g8d1wlb57kkvnmx1wsyasn93x9llkjva1"; depends=[data_table MASS]; };
   slimrec = derive2 { name="slimrec"; version="0.1.0"; sha256="1qzcvk7z8y11hwmybvppk1gf8di596zxy7qs22fclp6h6y18s377"; depends=[assertthat bigmemory glmnet Matrix pbapply]; };
+  slouch = derive2 { name="slouch"; version="2.1.1"; sha256="1pzvlbqyby12m0pfspbih222mbhdcgmians8khd3yj9570djxqa7"; depends=[ape memoise]; };
   slowraker = derive2 { name="slowraker"; version="0.1.1"; sha256="0glc3ldvbqkvzfvhs4s5mzx1kfz05px4k7rx5jfp9dm9d0gfpvsx"; depends=[NLP openNLP SnowballC]; };
   slp = derive2 { name="slp"; version="1.0-5"; sha256="0i9iv0s1wdp9cyzr8qixh6c7qvrj025vll13gyf8dfbidrp6hryl"; depends=[mgcv]; };
-  sm = derive2 { name="sm"; version="2.2-5.5"; sha256="1rw2mxygxsmk8mn4wag1ppjgzk0rlvh6zd8q02qrhjrn9jhi5qj3"; depends=[]; };
+  sm = derive2 { name="sm"; version="2.2-5.6"; sha256="0c4whcx879gb4lwvqnzxl5n9xgpcqh2c54ip9ami3mwfprzcv45q"; depends=[]; };
   smaa = derive2 { name="smaa"; version="0.3-0"; sha256="0y7j4q147fdk7fffyinc803mfzzsmcdfx8bp695w3wkq1wwy9kyl"; depends=[]; };
   smac = derive2 { name="smac"; version="1.0"; sha256="1inn7i5k0q5vln24kazh3gl3szf6lxwnjr2rw70jcyn9dr9iy952"; depends=[]; };
   smacof = derive2 { name="smacof"; version="1.10-8"; sha256="1q3xpfpcgsm98gzavkpsmsidch7sdxwr6iyqpz7cm8qiki8jgjzb"; depends=[candisc colorspace ellipse Hmisc MASS nnls plotrix polynom weights wordcloud]; };
   smacpod = derive2 { name="smacpod"; version="2.0.4"; sha256="0dh8n3rxrffr09a8q7vdlin9hq5f2v0hjjjqsmzgwf7ln1b9wcr1"; depends=[abind pbapply plotrix sp spatstat]; };
   smallarea = derive2 { name="smallarea"; version="0.1"; sha256="0jcv0xbh8v4g6zxxs4yyd0divwzk9d2w7g01r4s65khxvy3av7yx"; depends=[MASS]; };
-  smam = derive2 { name="smam"; version="0.3-0"; sha256="1sdr0ki2y9smiwfglgh97kj6y0n1z3blyyxk823xp3467byk1rnb"; depends=[Matrix numDeriv Rcpp]; };
-  smapr = derive2 { name="smapr"; version="0.1.2"; sha256="0j4ddlj5km0hmz9q61l93rm6gc7x6iyfgq1fbkjajmij0099mscr"; depends=[httr rappdirs raster rhdf5 rvest xml2]; };
+  smam = derive2 { name="smam"; version="0.4.0"; sha256="00fgjcx0pqj03f4bhbzdcj8194l0y1rp34qp51p5vnnagdksj11j"; depends=[doParallel foreach Matrix nloptr numDeriv Rcpp RcppGSL RcppParallel]; };
+  smapr = derive2 { name="smapr"; version="0.2.0"; sha256="13nvcfz4c2ipfb6ad9x59fm950prpdd991lzvszkdhsp53d0z9l4"; depends=[httr rappdirs raster rhdf5 rvest xml2]; };
   smart = derive2 { name="smart"; version="1.0.1"; sha256="0ki3qn71zrw0nyv395qijcwahnxyv1p21j8x6cxr9spah2wzz8lb"; depends=[elasticnet gplots gtools igraph Matrix pcaPP PMA]; };
+  smartdata = derive2 { name="smartdata"; version="1.0.0"; sha256="011yhhyfczzp90bzzfy6zh9nl7ikr6g7d0nghx63qvh89i823g2s"; depends=[adaptiveGPCA Amelia Boruta checkmate class clusterSim denoiseR discretization DMwR FSelector functional imbalance infotheo lle magrittr mice missForest missMDA MVN NoiseFiltersR outliers RoughSets unbalanced VIM]; };
   smartsizer = derive2 { name="smartsizer"; version="1.0.1"; sha256="0m474f6dz0izwdh2xvgx6shsbkpr969ckcld56d7c589kjhapbrl"; depends=[MASS]; };
   smatr = derive2 { name="smatr"; version="3.4-8"; sha256="0qqqbg65flxh48sw7x90zvgzbpcfzb1811h0pz3zlhdw9a7khs9n"; depends=[]; };
-  smbinning = derive2 { name="smbinning"; version="0.6"; sha256="13izdq2pl7hi8ppzmpmiiz4pmc43m63ixjrbj9lwa371vx60ndmh"; depends=[Formula gsubfn partykit sqldf]; };
+  smbinning = derive2 { name="smbinning"; version="0.7"; sha256="1pf74ys0jgm160zrwf8kv5j5bgb4i9z8cayirfxhwjdw9rc0w61p"; depends=[Formula gsubfn partykit sqldf]; };
   smcUtils = derive2 { name="smcUtils"; version="0.2.2"; sha256="0d1kmg386j0zrpp8vgxjwvpf1i25l86xrh82767xkp0n9qj8srwq"; depends=[]; };
-  smcfcs = derive2 { name="smcfcs"; version="1.3.0"; sha256="1860qzhfpdr78a8ha8537izbkm0dx9j63l9fv6mswcs5sjl25i09"; depends=[MASS survival VGAM]; };
+  smcfcs = derive2 { name="smcfcs"; version="1.3.1"; sha256="0f3sd4pz46wjpyw932qrxw4hr3fmdbjrhcrgfmvm89hp0r09vz74"; depends=[MASS survival VGAM]; };
   smco = derive2 { name="smco"; version="0.1"; sha256="1sj3y1x6pc32cwzyhn9gaxs964xh5xl4vw08hsa8kfcxhh2r0s99"; depends=[]; };
   smcure = derive2 { name="smcure"; version="2.0"; sha256="1j7fxnb0sx57a0l929c3haz4f1y829ymlq0cvdh0cia4qp6ydv60"; depends=[survival]; };
   smdata = derive2 { name="smdata"; version="1.2"; sha256="1p26b46kg4hmhs2fl9h9vchar00llqv58ylx438bjgzz4f229qvr"; depends=[]; };
@@ -11338,15 +11840,15 @@ in with self; {
   smds = derive2 { name="smds"; version="1.0"; sha256="0aqf3wfn6mlsl8a32gaf9qdpyxwsx19g6mma8qzgaysdmk6vhbpd"; depends=[MASS]; };
   sme = derive2 { name="sme"; version="1.0.2"; sha256="0gszpy1sx2qsypps3iza79sab475wcrscl7wnbbrv97a3ry0ybp6"; depends=[lattice]; };
   smerc = derive2 { name="smerc"; version="0.4.5"; sha256="1455fjfihznzivz80jad7pyfjms8yyvmsz6wqdvqv3n6dsyr8fvb"; depends=[fields maps matrixStats smacpod sp SpatialTools spdep]; };
-  smfsb = derive2 { name="smfsb"; version="1.1"; sha256="0khd23b6k9zgxz2x6g6c6k2g32mbpli32izdq6fgk1a990kdsp6j"; depends=[]; };
-  smicd = derive2 { name="smicd"; version="1.0.1"; sha256="05v1lwl2jacrzd4fcp7d386gd70q1kcrr96pnq39zdsniq2j7dn9"; depends=[formula_tools ineq laeken lme4 MuMIn mvtnorm spatstat truncnorm weights]; };
+  smfsb = derive2 { name="smfsb"; version="1.3"; sha256="1328w7zpwd3nam6ha4bh14g919jjl87v323ijmbp1j71gc64nn2i"; depends=[abind]; };
+  smicd = derive2 { name="smicd"; version="1.0.2"; sha256="1hylmii2nd0v2k8zksrd0bh882mqj16vdrxmal2lv79x3fb7jpkb"; depends=[formula_tools ineq laeken lme4 MuMIn mvtnorm spatstat truncnorm weights]; };
   smirnov = derive2 { name="smirnov"; version="1.0-1"; sha256="09mpb45wj8rfi6n6822h4c335xp2pl0xsyxgin1bkfw97yjcvrgk"; depends=[]; };
   smnet = derive2 { name="smnet"; version="2.1.1"; sha256="0fa47zgm7jxvs3jfai54wsc6qa9ycqw4f3yr941fvkczwzh4ch02"; depends=[DBI RSQLite spam SSN]; };
   smoof = derive2 { name="smoof"; version="1.5.1"; sha256="01jkldmxn86vmcmmz81mdlhpm1m3bddj4sv550a3b4wm1r3gddng"; depends=[BBmisc checkmate ggplot2 mco ParamHelpers plot3D plotly RColorBrewer Rcpp RcppArmadillo RJSONIO]; };
-  smooth = derive2 { name="smooth"; version="2.4.5"; sha256="0yp7ziikd1w0j091c49zqbfwypp49rfxpn410kbh09bay2fb58x1"; depends=[forecast greybox nloptr Rcpp RcppArmadillo zoo]; };
+  smooth = derive2 { name="smooth"; version="2.4.6"; sha256="1fcfhf7vzhvfa977a8wwgg4j1pb763a0yr4jzjkk1ah350h49vc4"; depends=[forecast greybox nloptr Rcpp RcppArmadillo zoo]; };
   smoothAPC = derive2 { name="smoothAPC"; version="0.3"; sha256="11f34qqdm8m0hmy9jf29q439slchvmqgdfrmak7vcdhfnjcylr5r"; depends=[colorspace lmtest quantreg rgl SparseM]; };
   smoothHR = derive2 { name="smoothHR"; version="1.0.2"; sha256="0l33xg3p9pyfrp4rhavz8m1jakk4wr8i14g6jjiizb03rpxdpzqy"; depends=[survival]; };
-  smoothSurv = derive2 { name="smoothSurv"; version="2.0"; sha256="0ypgmqf7mj0x0ibid9qx6cbqn4cpig8333g095b64297bf0syvjc"; depends=[survival]; };
+  smoothSurv = derive2 { name="smoothSurv"; version="2.0.1"; sha256="0srb6ms1ag3mllkf2rh0pnji9zp8c11mh8i5zgb6zh1nx2s86x93"; depends=[survival]; };
   smoother = derive2 { name="smoother"; version="1.1"; sha256="0nqr1bvlr5bnasqg74zmknjjl4x28kla9h5cxpga3kq5z215pdci"; depends=[TTR]; };
   smoothie = derive2 { name="smoothie"; version="1.0-1"; sha256="12p4ig8fbmlsby5jjd3d27njv8j7aiwx0m2n1nmgvjj0n330s1kj"; depends=[]; };
   smoothmest = derive2 { name="smoothmest"; version="0.1-2"; sha256="14cri1b6ha8w4h8m26b3d7qip211wfv1sywgdxw3a6vqgc65hmk5"; depends=[MASS]; };
@@ -11359,16 +11861,16 @@ in with self; {
   smss = derive2 { name="smss"; version="1.0-2"; sha256="04lgfdcvnzpnpplyl62fy7slyiy8wkqpjjrzmclgqis3c9zkkncp"; depends=[]; };
   sn = derive2 { name="sn"; version="1.5-2"; sha256="16gwr68zzj5v83bqfmzxnzwig3dnjrkxdhs6clri1caqkvrq6aig"; depends=[mnormt numDeriv]; };
   sna = derive2 { name="sna"; version="2.4"; sha256="1ks8819qvpdfansfqj9p32s1rhvl26frvbi78m4rx1wd1qcv74i2"; depends=[network statnet_common]; };
-  snakecase = derive2 { name="snakecase"; version="0.9.1"; sha256="02462vd08asm4ah2brrc3z2s1lqcya80shrd6w743cylv3h3hpyv"; depends=[stringi stringr]; };
+  snakecase = derive2 { name="snakecase"; version="0.9.2"; sha256="1g6xai53dl24ws0mwhqrkcv583ziaq505cv3z8v5dhjgy98kilyj"; depends=[stringi stringr]; };
   snappier = derive2 { name="snappier"; version="0.1.0"; sha256="0334zwhqdl3lfw7rg8ql7z10qj8jjrm17yi9mgdcxnzaf3f1p859"; depends=[]; };
   snapshot = derive2 { name="snapshot"; version="0.1.2"; sha256="0cif1ybxxjpyp3spnh98qpyw1i5sgi1jlafcbcldbqhsdzfz4q10"; depends=[]; };
   snht = derive2 { name="snht"; version="1.0.5"; sha256="0k8w1118b2qrf5zfi902gm6zf7b1mwv7py7wg57vsibh2r2ra8ah"; depends=[ggplot2 gridExtra mgcv plyr reshape2 zoo]; };
   snipEM = derive2 { name="snipEM"; version="1.0"; sha256="0f98c3ycl0g0l3sgjgk7xrjp6ss7n8zzlyzvpcb6agc60cnw3w03"; depends=[GSE MASS mvtnorm Rcpp RcppArmadillo]; };
   snn = derive2 { name="snn"; version="1.1"; sha256="0yywn3v1iz9xizwli3gmzprkx66b5a813mbp8hq2vsj8n4lfj8r5"; depends=[]; };
   snnR = derive2 { name="snnR"; version="1.0"; sha256="0qrl5ivpmipibszx8k9fvd8g462zzdcmzbjj1hb8apv4z79gzima"; depends=[]; };
-  snow = derive2 { name="snow"; version="0.4-2"; sha256="1mxbrkpnmq32x4wd0194d541661yvfrrjlr3lsf7qq53ms3h21zf"; depends=[]; };
+  snow = derive2 { name="snow"; version="0.4-3"; sha256="1n3n8pva9s34fvlw32yng0x416lmbv7q1fsd0ywa4kikmxym64l5"; depends=[]; };
   snowFT = derive2 { name="snowFT"; version="1.6-0"; sha256="00rq2xibzhx7441v9jg138a4fkmx28hifs4yyj3pwi8najf0df4n"; depends=[rlecuyer snow]; };
-  snowboot = derive2 { name="snowboot"; version="0.5.2"; sha256="07mly89x9mj5cvpmi45xmlr4d1l1d2fdcagmniviqqqhmllc50pi"; depends=[igraph Rcpp VGAM]; };
+  snowboot = derive2 { name="snowboot"; version="1.0.0"; sha256="1fqvij959699bfyzc2b2dmgkm3nm119b2zg0jh29mpka3v5qqy3n"; depends=[igraph Rcpp Rdpack VGAM]; };
   snowfall = derive2 { name="snowfall"; version="1.84-6.1"; sha256="13941rlw1jsdjsndp1plzj1cq5aqravizkrqn6l25r9im7rnsi2w"; depends=[snow]; };
   snowflakes = derive2 { name="snowflakes"; version="1.0.0"; sha256="0adna9jfs0wv4dhyjczxhq7c0ldjfai07p1q9119avxyilv9x0vi"; depends=[]; };
   snp_plotter = derive2 { name="snp.plotter"; version="0.5.1"; sha256="16apsqvkah5l0d5qcwp3lq2jspkb6n62wzr0wskmj84jblx483vv"; depends=[genetics]; };
@@ -11381,7 +11883,7 @@ in with self; {
   sns = derive2 { name="sns"; version="1.1.2"; sha256="132zd57xb2y0nshw4lakf49r2mvvkv7j32f7l7hqrh91mw7wyqpr"; depends=[coda mvtnorm numDeriv]; };
   soc_ca = derive2 { name="soc.ca"; version="0.7.3"; sha256="0z3phmvgwd3s6swfaywq851my12a2n48i6k26vhggc6pf9d28phl"; depends=[ellipse ggplot2 ggrepel gridExtra reshape2 shiny]; };
   social = derive2 { name="social"; version="1.0"; sha256="0ny81bhj80rlwwa6cgbkdz2rxz6bp0f3nvjr1sqxr4s8l8rnf4ic"; depends=[Rcpp]; };
-  socialmixr = derive2 { name="socialmixr"; version="0.1.2"; sha256="0cj8l1gl7c9hk3hpznfqhblmh79qvi9866713sry538f3kkv897c"; depends=[countrycode curl data_table httr jsonlite oai stringr wpp2015 XML]; };
+  socialmixr = derive2 { name="socialmixr"; version="0.1.3"; sha256="16z0ykbji9vh2j0d02x6vcrxwwqpzjckfxr1wjkvfc86mqpgpqmd"; depends=[countrycode curl data_table httr jsonlite oai stringr wpp2015 XML]; };
   sodavis = derive2 { name="sodavis"; version="1.2"; sha256="1jf5sml51qxlpgv5b1rvyig4dm4ijw2hpnk85zf790jp22xm64jw"; depends=[MASS mvtnorm nnet]; };
   sodium = derive2 { name="sodium"; version="1.1"; sha256="1zxzi8xvxnhgcd5qrylf08nz1cdq3aslrswjas440qg63ypmbf6w"; depends=[]; };
   sofa = derive2 { name="sofa"; version="0.3.0"; sha256="10f01a23bq6a30f95cilfan588dg0bg36y7g14q46rmcz15cqbrx"; depends=[crul jsonlite mime R6]; };
@@ -11393,7 +11895,7 @@ in with self; {
   soilDB = derive2 { name="soilDB"; version="2.0-1"; sha256="0nzi0fss77x0bjdzslhy0flwvhap0i0cq3xw82x7sggnbmc3ya72"; depends=[aqp curl Hmisc plyr raster reshape2 sp xml2]; };
   soilcarbon = derive2 { name="soilcarbon"; version="1.2.0"; sha256="1gxq7np5xh3jcqbsf8xva4b82rv6rab2j23mbkc4pjs6nbnzvzba"; depends=[devtools ggplot2 openxlsx shiny]; };
   soilphysics = derive2 { name="soilphysics"; version="3.1"; sha256="11c094bqbwhggh0n3hdva1321gqzz2k1b7v3767wyyk1xpgzg98r"; depends=[boot MASS rpanel tkrplot]; };
-  soiltexture = derive2 { name="soiltexture"; version="1.4.6"; sha256="1ak8vp6y2cb04118bw5inmwwgjvbxmzpbarr6ga7r1w5i16c7nk7"; depends=[MASS sp]; };
+  soiltexture = derive2 { name="soiltexture"; version="1.5.1"; sha256="1l9npvk910488qzd45ibc7ss557hnkb78lx1p6fs3nhl8sacgyxh"; depends=[MASS sp]; };
   soilwater = derive2 { name="soilwater"; version="1.0.5"; sha256="11gal7hj73j82qx65krmzpmf0gpm41ph8hw70df46dbf4w23vvjn"; depends=[]; };
   sokoban = derive2 { name="sokoban"; version="0.1.0"; sha256="07r2zv9rynvw06fpncrz3rsmkdy6z2pcvmm559bhs428kmnq2xib"; depends=[]; };
   solaR = derive2 { name="solaR"; version="0.44"; sha256="1waxi2zfns4dh1vpsl3khbgaw07icp4f1ax9l0pry9qipmk0nk3k"; depends=[lattice latticeExtra RColorBrewer zoo]; };
@@ -11401,14 +11903,14 @@ in with self; {
   solarius = derive2 { name="solarius"; version="0.3.0.2"; sha256="17c765nxq81xshyyl4lfhqjmgvmhn9xyzc6x4qd33wvhh4148f38"; depends=[data_table ggplot2 plyr]; };
   solrad = derive2 { name="solrad"; version="0.99.0"; sha256="1r3bz2nvg660bfba9xbqlzrysvn0wpmn948qx3hfbqcv5ihcnly3"; depends=[]; };
   solrium = derive2 { name="solrium"; version="1.0.0"; sha256="1rlf60kynqb8pvzllfdkiabxgnqx60hwm8vy86y9f2bh7d7jsdhf"; depends=[crul dplyr jsonlite plyr R6 tibble xml2]; };
-  solvebio = derive2 { name="solvebio"; version="2.5.0"; sha256="1053pmmm1bl5kfrgmlbfnb6xywvv4nwrd6mwn9kyj2p63akvwq1s"; depends=[dplyr httr jsonlite mime]; };
+  solvebio = derive2 { name="solvebio"; version="2.6.1"; sha256="17zcnfmccfl2njv1ph40jchxb06x0qhgn82fz4yg8nqyf8b9cq5h"; depends=[dplyr httr jsonlite mime]; };
   som = derive2 { name="som"; version="0.3-5.1"; sha256="1fbza1jxvwrkf5x3inkj36vshhkn7mz0ajqlxalbfmk6ngjw1x56"; depends=[]; };
   som_nn = derive2 { name="som.nn"; version="1.1.0"; sha256="0mw2c2lqvdq9bhndpjyawjy43l4x7clcsx2350j45g7fnchhy602"; depends=[class hexbin kohonen som]; };
   soma = derive2 { name="soma"; version="1.1.1"; sha256="1mc1yr9sq9h2z60v40aqmil0xswj5hgxfdh4racq297qw3a97my4"; depends=[reportr]; };
   someKfwer = derive2 { name="someKfwer"; version="1.2"; sha256="0widny5l04ja91fy16x4giwrabwqhx0fs3yl48pv9xh4zj6sx563"; depends=[]; };
   someMTP = derive2 { name="someMTP"; version="1.4.1"; sha256="19bsn8rny1vv9343bvk8xzhh82sskl0zg0f5r59g9k812q5llchn"; depends=[]; };
   somebm = derive2 { name="somebm"; version="0.1"; sha256="1iwwc94k6znh4d3bbjnvwp4chc4wg0iy4v2f99cs4jasrsimb4p8"; depends=[]; };
-  sommer = derive2 { name="sommer"; version="3.5"; sha256="1qsg822y3fsqs7knc8vwlhnnh51d8f8rn7yzvmxiqd8qnrkkmbix"; depends=[data_table lattice MASS Matrix]; };
+  sommer = derive2 { name="sommer"; version="3.6"; sha256="1znp5svj2l2632ivnilc0060x8k8mbiv55ppgfcmnj5d22vlb06q"; depends=[data_table lattice MASS Matrix]; };
   somplot = derive2 { name="somplot"; version="1.6.4"; sha256="06c8p2lqz3yxmxdl7ji8a3czvxnsbl7bwyiig76pkwc3a5qqfbb9"; depends=[hexbin]; };
   sonar = derive2 { name="sonar"; version="1.0.2"; sha256="1f0f5iqi3y9vnxyym14nm8dqxw0vcpnxmvvkx4sm612i4fclg1f9"; depends=[]; };
   sonicLength = derive2 { name="sonicLength"; version="1.4.4"; sha256="1v46xzx3jxxxs2biyrq6xbv2lhpz1i95la93hj6dl4jfyikmx0im"; depends=[]; };
@@ -11424,7 +11926,7 @@ in with self; {
   sotu = derive2 { name="sotu"; version="1.0.2"; sha256="0aqwkawaydsm91hz13msjg1a5llg7xmv6hxmfmsaganrl7iaym3c"; depends=[]; };
   sound = derive2 { name="sound"; version="1.4.5"; sha256="1kbbb614d0fmj9l0yjiwf5yqnl7sby4xklp7qwp6rwjvq9bnm0ab"; depends=[]; };
   soundecology = derive2 { name="soundecology"; version="1.3.3"; sha256="16h6gbdlyav7wbfisdv1f2zsqhr45liidgj7qqk8giwjxgan8q97"; depends=[ineq oce pracma seewave tuneR vegan]; };
-  soundgen = derive2 { name="soundgen"; version="1.2.0"; sha256="1k6my6lcwy36fa25glyd8vfr3b57fwx7nz4s24bkf40vp0vkpsc2"; depends=[dtw mvtnorm phonTools plyr reshape2 seewave shiny tuneR zoo]; };
+  soundgen = derive2 { name="soundgen"; version="1.3.1"; sha256="0hsd00bmm6szvx0pjlprqg4749pwr39hippwvl5fkwm8fqb482p5"; depends=[dtw mvtnorm phonTools plyr reshape2 seewave shiny tuneR zoo]; };
   source_gist = derive2 { name="source.gist"; version="1.0.0"; sha256="03bv0l4ccz9p41cjw18wlz081vbjxzfgq3imlhq3pgy9jdwcd8fp"; depends=[RCurl rjson]; };
   sourceR = derive2 { name="sourceR"; version="1.0.1"; sha256="01qxa44s9szaxl0rdcx4p0wn4vby17hdzdjzpsbls3prsnr0jaad"; depends=[assertthat cluster dplyr gplots gtools hashmap R6 reshape2 SPIn tensorA]; };
   sourcetools = derive2 { name="sourcetools"; version="0.1.7"; sha256="1jnjir0q2dj724f1mjm6p5h77yzyx6xcqy9r2g7gmcxkxw349627"; depends=[]; };
@@ -11433,46 +11935,48 @@ in with self; {
   spAddins = derive2 { name="spAddins"; version="0.2.0"; sha256="19wbcghcf0f9qvqy92jhsdcpmd9b4lkhxndvr71cyhzga539lh1n"; depends=[magrittr purrr rstudioapi stringr]; };
   spBayes = derive2 { name="spBayes"; version="0.4-1"; sha256="1cypl3kvcr7nwdkq59zpdhkasz0z5r2gk8hr6wf1a1992k8c33ag"; depends=[abind coda Formula magic]; };
   spBayesSurv = derive2 { name="spBayesSurv"; version="1.1.3"; sha256="0syb4x05j878jhcql8prfw1aqxmpi1idxk1d4xl52j32wngkpn8b"; depends=[coda fields MASS Rcpp RcppArmadillo survival]; };
-  spData = derive2 { name="spData"; version="0.2.9.0"; sha256="1yzgfbihpx9xj2vw6amm5sqib9d8xs4p964hlqbvypp4hfphnpwc"; depends=[]; };
+  spCP = derive2 { name="spCP"; version="1.0"; sha256="1qi5p77kjwkv8c84j20mx0zm4y4vycip4ghgf6jqhn14d4ifvkmj"; depends=[msm mvtnorm Rcpp RcppArmadillo]; };
+  spData = derive2 { name="spData"; version="0.2.9.4"; sha256="039rf7c5npv0xhw46ja5igravi3l0zcg9vfkngza1vn4zwgg1yi8"; depends=[]; };
   spFSR = derive2 { name="spFSR"; version="1.0.0"; sha256="0094plnjlyhnnjqw3i4an5q95bw6hjy1gzc7zr6wy77faivqsbms"; depends=[class ggplot2 mlbench mlr parallelMap tictoc]; };
-  spGARCH = derive2 { name="spGARCH"; version="0.1.5"; sha256="14r8b2hj211r3bqk44l5y4zvlqbk6h8pa5i25rn0d9fqr37cks1f"; depends=[Matrix Rcpp RcppEigen Rsolnp spdep truncnorm]; };
+  spGARCH = derive2 { name="spGARCH"; version="0.1.6"; sha256="10ksbqk5s9qq6lz17h07kmg2gr1ppq2rjm06kipscs9v0zldki9l"; depends=[Matrix Rcpp RcppEigen Rsolnp spdep truncnorm]; };
   spMC = derive2 { name="spMC"; version="0.3.9"; sha256="10cvha5j2pi3b2qiq3jbrc10yi84a595zlg0wshx3wrzxb1rim85"; depends=[]; };
   spMaps = derive2 { name="spMaps"; version="0.3"; sha256="0w4rrzbybaf9zgb09zg0zkf2hgvfrwx57yzbxm4px1ygdfxyi4cm"; depends=[raster rgeos sp]; };
   spNNGP = derive2 { name="spNNGP"; version="0.1.1"; sha256="0b55arvy5xr592bs2082djyzaa48jbv0y85h7nnj479f8c31grqp"; depends=[coda Formula RANN]; };
   spTDyn = derive2 { name="spTDyn"; version="2.0"; sha256="0wandd5iqyqb474096lky04rrgj31gnyqnlmgw8ypxsypd0gqdy0"; depends=[coda sp spacetime spTimer]; };
   spTest = derive2 { name="spTest"; version="0.2.5"; sha256="11x2wq3031mqbj4n6hvb4l3sp4382qankdl1v1qh7ab2xa0h6xw8"; depends=[geoR sp]; };
   spThin = derive2 { name="spThin"; version="0.1.0"; sha256="06qbk0qiaw7ly1ywbr4cnkmqfasymr7gbhvq8jjbljm0l69fgjpp"; depends=[fields knitr spam]; };
-  spTimer = derive2 { name="spTimer"; version="3.1"; sha256="1b3d8z8bb8jagr4vcxwqfcq2y37hb975v75ggmpc02jvy228xs1z"; depends=[coda extraDistr sp spacetime]; };
+  spTimer = derive2 { name="spTimer"; version="3.2"; sha256="1hw40jb8n9amg3i1lyjlc26gpafxd0jjf3yw5r24pqlh0d11n0i7"; depends=[coda extraDistr sp spacetime]; };
   spa = derive2 { name="spa"; version="2.0"; sha256="1np50qiiy3481xs8w0xfmyfl3aypikl1i1w8aa5n2qr16ksxrnq3"; depends=[cluster MASS]; };
-  spaMM = derive2 { name="spaMM"; version="2.4.35"; sha256="1b013kyrhld2y4wr69v4bkii4qjp38hrp1srmmj5ldb68zw3vadz"; depends=[MASS Matrix nlme nloptr pbapply proxy Rcpp RcppEigen]; };
+  spaMM = derive2 { name="spaMM"; version="2.5.0"; sha256="00y2n0k9qq54qa1vz72q7g6m3nq62n6wm3vxx2c540k404kil8p3"; depends=[MASS Matrix nlme nloptr pbapply proxy Rcpp RcppEigen]; };
   spaa = derive2 { name="spaa"; version="0.2.2"; sha256="163iipz1knxx1lzby9a3n1f014yqkf25z1wpwwy4gbx7sia499d5"; depends=[]; };
   space = derive2 { name="space"; version="0.1-1"; sha256="1qigfz62xz47hqi43aii3yr4h7ddvaf11a5nil7rqprgkd0k6mv3"; depends=[]; };
   spaceNet = derive2 { name="spaceNet"; version="1.0.1"; sha256="005jz7bm3c7zi3pgm8wyivc2kl058c0lwdjjzv0qb1vdsq9mpxx1"; depends=[MASS permute RcppTN Rfast sna vegan]; };
   spacejam = derive2 { name="spacejam"; version="1.1"; sha256="1mdxmfa1aifh3h279cklm4inin0cx3h0z2lm738bai34j6hpvar7"; depends=[igraph Matrix]; };
-  spacesRGB = derive2 { name="spacesRGB"; version="1.0-4"; sha256="0bifagywaksn27cdfsln52f5nwsaj347xilp812shmcma29b08ig"; depends=[]; };
-  spacetime = derive2 { name="spacetime"; version="1.2-1"; sha256="1i6yrmyr9vc5lr99w7qhr0jqdx97ckjqay5g0lqdrk98sygpfl4g"; depends=[intervals lattice sp xts zoo]; };
+  spacesRGB = derive2 { name="spacesRGB"; version="1.1-1"; sha256="1298dxzli8f4bpv8114y7d9r7d2i80qvbmc9n67znpg5wdib79b7"; depends=[]; };
+  spacesXYZ = derive2 { name="spacesXYZ"; version="1.0-1"; sha256="1v6ancnd0k6rpf5b4bh4ndk9d8rlvlqd17snnlq53mr1pm9a2hp8"; depends=[]; };
+  spacetime = derive2 { name="spacetime"; version="1.2-2"; sha256="0bgaarh2ibj3z6z504mzcb94x6w2bh5vyn1ar1lllqf4wn93z78y"; depends=[intervals lattice sp xts zoo]; };
   spacodiR = derive2 { name="spacodiR"; version="0.13.0115"; sha256="0c0grrvillpwjzv6fixviizq9l33y7486ypxniwg7i5j6k36nkpl"; depends=[colorspace picante Rcpp]; };
   spacom = derive2 { name="spacom"; version="1.0-5"; sha256="0b6yh4q9f0ibwlwyckwaya9m645j22x6bdz9mz3chass8qza6bls"; depends=[foreach iterators lme4 Matrix nlme spdep]; };
-  spacyr = derive2 { name="spacyr"; version="0.9.9"; sha256="1zdn57k5iacy73xmac32mslqzidpn3d38qyrnbzkzv2slysqwgkw"; depends=[data_table reticulate]; };
-  spaero = derive2 { name="spaero"; version="0.2.0"; sha256="0srkah89z23j30y2smlnyhf97mm123apma8vgmgfarbx188bkwpn"; depends=[]; };
-  spagmix = derive2 { name="spagmix"; version="0.2-0"; sha256="16yzkq1z5qj21milyw98a5bk7gvi6k3mbwgvnw7s8ckr40pbp48l"; depends=[abind MCMCpack mvtnorm sparr spatstat]; };
+  spacyr = derive2 { name="spacyr"; version="0.9.91"; sha256="03dpp26lq4a5x0p5l3l8d2gs9v2pc13c14ir8vf7ws46970f6var"; depends=[data_table reticulate]; };
+  spaero = derive2 { name="spaero"; version="0.3.0"; sha256="1l6h6mri78b49mw6b1d9dirygfj57pdyqx6822llnj3wkdn2x87v"; depends=[]; };
+  spagmix = derive2 { name="spagmix"; version="0.3-1"; sha256="0xfrm4i28sy490g5324bc43dxlrgcnzxg27gsd5b81mqi03sry9j"; depends=[abind mvtnorm RandomFields sparr spatstat]; };
   spam = derive2 { name="spam"; version="2.2-0"; sha256="02v78dmf263drmz3y099gbakbcvaxkb18900s7sw440cjfv691d1"; depends=[dotCall64]; };
   spam64 = derive2 { name="spam64"; version="2.2-0"; sha256="1kyj93drzvd4ph6x7wr318xq3ldrrdxb17rwxws39wa4gj7jkmkg"; depends=[]; };
   spanel = derive2 { name="spanel"; version="0.1"; sha256="1riyvvfij277mclgik41gyi01qv0k466wyk2wbqqhlvrlj79yzsc"; depends=[]; };
   spanish = derive2 { name="spanish"; version="0.3.2"; sha256="1dg4wnvxhybhagag9xx27af6760dlclaivx27mfxywfha312xfpn"; depends=[magrittr xml2]; };
-  spant = derive2 { name="spant"; version="0.10.0"; sha256="0kvxaaqij2wnjchp4zrqkwnsp6g767mx840xvyb8lq01a9k7jjyn"; depends=[abind complexplus foreach magrittr matrixcalc minpack_lm nnls plyr pracma readr signal smoother stringr svd tibble tkrplot]; };
+  spant = derive2 { name="spant"; version="0.11.0"; sha256="0fy5fsiqf4sgrlzrfy16affdz83f564qm6369jsv6jcdxcsl3pmv"; depends=[abind complexplus foreach magrittr matrixcalc minpack_lm nnls plyr pracma readr signal smoother stringr svd tibble tkrplot]; };
   sparc = derive2 { name="sparc"; version="0.9.0"; sha256="0jsirrkmvrfxav9sphk8a4n52fg0d1vnk3i8m804i4xl0s7lrg8s"; depends=[]; };
-  sparcl = derive2 { name="sparcl"; version="1.0.3"; sha256="1348pi8akx1k6b7cf4bhpm4jqr5v8l5k086c7s6rbi5p6qlpsrvz"; depends=[]; };
+  sparcl = derive2 { name="sparcl"; version="1.0.4"; sha256="138krflvfdlx4hlh90mswds51i8aw2vv00gm5lgkfsvxj4w324jg"; depends=[]; };
   spareserver = derive2 { name="spareserver"; version="1.0.1"; sha256="094q5i6v4v37hzfdyps8zni394z312r802hl04jw0xzzps922rq4"; depends=[assertthat httr pingr]; };
-  spark = derive2 { name="spark"; version="2.0.0"; sha256="062i9qah9zws6p555pk1b42qmd04l8sx22h71skpx76vgb0lsn83"; depends=[clisymbols]; };
   spark_sas7bdat = derive2 { name="spark.sas7bdat"; version="1.2"; sha256="1kvzfjhf1q5jzlq5d04s7d96j63vnvqqrh8s03rwkl79h1dhqhhp"; depends=[sparklyr]; };
   sparkTable = derive2 { name="sparkTable"; version="1.3.0"; sha256="1fc2nihxfrjpmxm9g9296mz5czd3ydvi1v37g8qgb20j7b73c64h"; depends=[boot Cairo ggplot2 gridExtra pixmap Rglpk RGraphics shiny StatMatch xtable]; };
   sparkavro = derive2 { name="sparkavro"; version="0.1.0"; sha256="0jihqvjs7dgyxhyzhsbki7khy7fjniwf9xwlangzqfi4rcan8g7x"; depends=[DBI dplyr sparklyr]; };
+  sparkbq = derive2 { name="sparkbq"; version="0.1.0"; sha256="0jcxnivi5zfbixmdywhn1v42lxi085wh7r4c26laclz9j2wvj8mk"; depends=[sparklyr]; };
   sparkline = derive2 { name="sparkline"; version="2.0"; sha256="0lrr1lm7603di7x3mf53cp13d9ssjh9gmb43wa6z9yqapis2djm2"; depends=[htmltools htmlwidgets]; };
-  sparklyr = derive2 { name="sparklyr"; version="0.8.4"; sha256="1gmzg8464wqygx8r0rh1d67a2h9zpm98y6jwi3ay4adw7bnffhvx"; depends=[assertthat base64enc broom config DBI dbplyr digest dplyr httr jsonlite lazyeval openssl rappdirs readr rlang rprojroot rstudioapi shiny tidyr withr xml2]; };
+  sparklyr = derive2 { name="sparklyr"; version="0.9.2"; sha256="06jkxp7y57fs2ij1rzr56lf3a5900l6a0aq24qapyyn6jsvrk00h"; depends=[assertthat base64enc broom config DBI dbplyr digest dplyr forge httr jsonlite lazyeval openssl purrr r2d3 rappdirs rlang rprojroot rstudioapi shiny tibble tidyr withr xml2]; };
   sparktex = derive2 { name="sparktex"; version="0.1"; sha256="0r6jnn9fj166pdhnjbsaqmfmnkq0qr1cjprihlnln9jad05mrkjx"; depends=[]; };
   sparkwarc = derive2 { name="sparkwarc"; version="0.1.1"; sha256="07b66f12fz19042kj7d9p32j9sy3103zvil36xkf21hm9iyg6xph"; depends=[DBI sparklyr]; };
-  sparr = derive2 { name="sparr"; version="2.2-11"; sha256="01li60cybv9kg54zkc9rh4ra6danzbnap9rx59pgfj7zkhs2phmn"; depends=[doParallel foreach misc3d spatstat spatstat_utils]; };
+  sparr = derive2 { name="sparr"; version="2.2-13"; sha256="1cn8bzlfairfrxfwwdap0pnaa97rn9h13jz54il8cn9zacnzb8yc"; depends=[doParallel foreach misc3d spatstat spatstat_utils]; };
   sparseBC = derive2 { name="sparseBC"; version="1.1"; sha256="1w60n2875n809lbrn0hd4kdmsyfd64aikgzxchza8b59x77l0psy"; depends=[fields glasso]; };
   sparseEigen = derive2 { name="sparseEigen"; version="0.1.0"; sha256="0vqcy61rarmp3liz8fr3vs3y40hkb3wfw89b5xsj1byaiap4772s"; depends=[]; };
   sparseFLMM = derive2 { name="sparseFLMM"; version="0.2.2"; sha256="12143qij3p8vry9i02i52nj00m1ckkwg2rq99dq00dq43axcpvgw"; depends=[data_table MASS Matrix mgcv refund]; };
@@ -11485,17 +11989,16 @@ in with self; {
   sparseSVM = derive2 { name="sparseSVM"; version="1.1-6"; sha256="0b0qiikjyyh9qfd4jl69zqnlp7adxq63mwsxvgwvyc0pv5ccg8i0"; depends=[]; };
   sparsebn = derive2 { name="sparsebn"; version="0.0.5"; sha256="19315nzj9pz98498amlhas6ii3vwvn3qxz5a6136nh2xfwfg2bhc"; depends=[ccdrAlgorithm discretecdAlgorithm sparsebnUtils]; };
   sparsebnUtils = derive2 { name="sparsebnUtils"; version="0.0.6"; sha256="02a75ldvxfn0awn2aaws3fgd4zzk1jjfry4nxjf3y1grdbbz396y"; depends=[Matrix nnet]; };
-  sparsediscrim = derive2 { name="sparsediscrim"; version="0.2.4"; sha256="1sa3yssncbpx8yid5wrnxdq7jl3hy5rskyh60v5x592ijcb2mif0"; depends=[bdsmatrix corpcor dplyr ggplot2 mvtnorm]; };
-  sparseinv = derive2 { name="sparseinv"; version="0.1.2"; sha256="1lf0lbk8dslasd6m1rq4wzpxa1v427j5i9j0rrw5xjx80z1gc206"; depends=[Matrix spam]; };
+  sparseinv = derive2 { name="sparseinv"; version="0.1.3"; sha256="06inzix9m7b5g7c97lyvyl2g7fdr4iz60791hl2w9mah7nd6bfja"; depends=[Matrix Rcpp spam]; };
   sparsepca = derive2 { name="sparsepca"; version="0.1.2"; sha256="0wk2nm37p15gb8i4s45izzzdmwywr56kv4g0j3jd5s3slm224vv4"; depends=[rsvd]; };
-  sparsepp = derive2 { name="sparsepp"; version="0.2.0"; sha256="0ibadyv7lchxw3y1dspjnbhc4pin4dxwqj9rdrdxfbvlx0i3jgxr"; depends=[]; };
+  sparsepp = derive2 { name="sparsepp"; version="1.22"; sha256="0wa1585pkbn3y11apyim4z1ixn300c1yyv9bf2qldb6cjfiv7699"; depends=[]; };
   sparsereg = derive2 { name="sparsereg"; version="1.2"; sha256="1ipsang2fppmjx4h5ljgzx3c44z3lggc376ghrqqgmxb5ql8bcp3"; depends=[coda ggplot2 GIGrvg glmnet gridExtra MASS MCMCpack msm Rcpp RcppArmadillo VGAM]; };
   sparsestep = derive2 { name="sparsestep"; version="1.0.0"; sha256="0f3wrwiyn990sn3x9r50zgs8cr76nmyisdc7qismgx1nn5yx5z0g"; depends=[Matrix]; };
   sparsesvd = derive2 { name="sparsesvd"; version="0.1-4"; sha256="1yf373552wvdnd65r7hfcqa3v29dqn7jd4cn431mqd2acnqjrsam"; depends=[Matrix]; };
   sparsevar = derive2 { name="sparsevar"; version="0.0.10"; sha256="069r0kbypmx7pw3z2v9l17qidw3d73rzf5zs6yn1adyvpsddjxi8"; depends=[doParallel flare ggplot2 glmnet Matrix mvtnorm ncvreg picasso reshape2]; };
   sparsio = derive2 { name="sparsio"; version="1.0.0"; sha256="12nbydgzl3qlanlsfdy8bvg6rxa439lv0z0vbyqssqwky3mmg5c3"; depends=[Matrix Rcpp]; };
   spartan = derive2 { name="spartan"; version="3.0.1"; sha256="15gn72cgbb3hf6grq2hhh2vxd3in0jp62k11qfap6fy9rm4cnqg6"; depends=[e1071 ggplot2 gplots lhs mco mlegp neuralnet plotrix psych randomForest XML]; };
-  spass = derive2 { name="spass"; version="1.1"; sha256="1kr2ixyvsm82h2brdm51bzll69632mkj9f88a2ny0pcyqrbggg83"; depends=[geepack MASS multcomp mvtnorm Rcpp]; };
+  spass = derive2 { name="spass"; version="1.2"; sha256="0vf7fl68ibv6bwj6v3mh7d0l809kxlcjjgpwqhpgrkqmk1qvzgss"; depends=[geepack MASS multcomp mvtnorm Rcpp]; };
   spate = derive2 { name="spate"; version="1.5"; sha256="1hlh4iwx1lrl8r2gag33z2xdv6k4hg86ch4f0jlqnqkhm9hapshf"; depends=[mvtnorm truncnorm]; };
   spatgraphs = derive2 { name="spatgraphs"; version="3.2-1"; sha256="0n7f3r4ahv1w5mwx5mnib3g4263kz73rh1fcfk5wb12y52x8n1iz"; depends=[Matrix Rcpp]; };
   spatial = derive2 { name="spatial"; version="7.3-11"; sha256="04aw8j533sn63ybyrf4hyhrqm4058vfcb7yhjy07kq92mk94hi32"; depends=[]; };
@@ -11509,12 +12012,14 @@ in with self; {
   spatialkernel = derive2 { name="spatialkernel"; version="0.4-23"; sha256="0kvhirh7afk2gfy21pa6117yk6kzbaf2dxfkr1ax3b554rnrv4p0"; depends=[spatstat]; };
   spatialnbda = derive2 { name="spatialnbda"; version="1.0"; sha256="14mx5jybymasyia752f3vnr5vmswcavbz8bpqr69vlxphw27qkwk"; depends=[mvtnorm SocialNetworks]; };
   spatialprobit = derive2 { name="spatialprobit"; version="0.9-11"; sha256="1cpxxylc0pm7h9m83m2cklrh4jni5x79r5m5gibxi6viahwxn9kc"; depends=[Matrix mvtnorm spdep tmvtnorm]; };
+  spatialrisk = derive2 { name="spatialrisk"; version="0.4.1"; sha256="0r65y3ch53gbfb0di0svlb2zr39b5v0gbgjh713jgnw44g2g43r3"; depends=[Rcpp RcppProgress]; };
   spatialsegregation = derive2 { name="spatialsegregation"; version="2.44"; sha256="02s75q6ylzm6xzr1q23fhps3svlb0ix86dzgr23wf42369gs7h0g"; depends=[spatstat]; };
   spatialwarnings = derive2 { name="spatialwarnings"; version="1.2"; sha256="1kpyx1jl23ml4gpbwz5p4srmdq58634dxznw1g6f618wml13ab3s"; depends=[ggplot2 plyr Rcpp RcppArmadillo reshape2 tidyr VGAM]; };
-  spatstat = derive2 { name="spatstat"; version="1.56-0"; sha256="0gigb7vpgpwg4hrwsl9wncknrl2c7i4iv9aab2qskbc5z7xxjs4v"; depends=[abind deldir goftest Matrix mgcv nlme polyclip rpart spatstat_data spatstat_utils tensor]; };
-  spatstat_data = derive2 { name="spatstat.data"; version="1.3-1"; sha256="13wb9c1r7g2lrrjv7a2qmkyz27yjmcasl9qrzgk09akqgikkbbf3"; depends=[spatstat_utils]; };
+  spatsoc = derive2 { name="spatsoc"; version="0.1.4"; sha256="0h41ql1ll1ypmwfjczk3pls78z75xz8qakl61xrynqmw0y7l9fys"; depends=[adehabitatHR data_table igraph rgeos sp]; };
+  spatstat = derive2 { name="spatstat"; version="1.56-1"; sha256="0q3srg3rdnvwz52lqpamhhj97nkxkl55kqk2dw1707iic14dv0w6"; depends=[abind deldir goftest Matrix mgcv nlme polyclip rpart spatstat_data spatstat_utils tensor]; };
+  spatstat_data = derive2 { name="spatstat.data"; version="1.4-0"; sha256="137cf9x6qcp7lw3rpjqizsy73z99yihff8gr434wlz7b5fwmn7hj"; depends=[spatstat_utils]; };
   spatstat_local = derive2 { name="spatstat.local"; version="3.5-7"; sha256="1sdcx4qxv0z5q97rljn34mssbs4w6qbqxhn71xmkns01xypl1wr2"; depends=[spatstat spatstat_utils tensor]; };
-  spatstat_utils = derive2 { name="spatstat.utils"; version="1.8-2"; sha256="1wjvwhhyqh8f4cm3xw7vhrnj5qr9vlwkcxkj1l6s4sbjbcli2y2p"; depends=[]; };
+  spatstat_utils = derive2 { name="spatstat.utils"; version="1.10-0"; sha256="1wmakkc9b8vzyjdjwgr15hf676lrx11kxgmg3mbl0r9i72lflnvs"; depends=[]; };
   spatsurv = derive2 { name="spatsurv"; version="1.2"; sha256="0acg6n5qs3z9c7y2n3amla61dm3z1p16njkx0h52dlgdbj5v1nhn"; depends=[fields geostatsp iterators lubridate Matrix OpenStreetMap RandomFields raster RColorBrewer rgeos rgl sp spatstat stringr survival]; };
   spbabel = derive2 { name="spbabel"; version="0.4.8"; sha256="1f0lradf7a3fjkdhbviw24awpqj1pzw1wfvigrqhnmf0jjw3nng3"; depends=[dplyr sp tibble]; };
   spc = derive2 { name="spc"; version="0.6.0"; sha256="118r2yjfmzm0bi3ccx9pzi56vw2kbjz0pbxrjqdks0075fk7ij0q"; depends=[]; };
@@ -11524,7 +12029,7 @@ in with self; {
   spcov = derive2 { name="spcov"; version="1.01"; sha256="1brmy64wbk56bwz9va7mc86a0ajbfy09qpjafyq2jv7gm7a35ph5"; depends=[]; };
   spcr = derive2 { name="spcr"; version="2.0"; sha256="1n0lva9brpzxysw6p7l88cj8d46jng2zd7zvr5brqldzd3yl63l9"; depends=[]; };
   spd = derive2 { name="spd"; version="2.0-1"; sha256="00zxh4ri47b61jkcjf5idl9hhlfld6rhczsnhmjsax59884f2i8m"; depends=[KernSmooth]; };
-  spdep = derive2 { name="spdep"; version="0.7-7"; sha256="0wrlximy4w5y5aszy3pacmf3ag224chl12q4rj4r7ky6zw2sn1ns"; depends=[boot coda deldir expm gmodels LearnBayes MASS Matrix nlme sp spData]; };
+  spdep = derive2 { name="spdep"; version="0.7-9"; sha256="17sx6zkrnmbhhqqjb9qgp9mmykszqqr2hw3npk8q74k567mgxgcm"; depends=[boot coda deldir expm gmodels LearnBayes MASS Matrix nlme sp spData]; };
   spdownscale = derive2 { name="spdownscale"; version="0.1.0"; sha256="0pl560km9629iwy13h7359ab7ixzs09hg986kvk0xbnc348srb86"; depends=[]; };
   spdplyr = derive2 { name="spdplyr"; version="0.1.3"; sha256="1f34yzj9z4f1dj7pqaayk0mvabzwa6kc3kwi1pmpikl1afgsyv25"; depends=[dplyr lazyeval rlang sp spbabel tibble]; };
   spduration = derive2 { name="spduration"; version="0.17.1"; sha256="1hsz4hcw85f1rj2pd8ppzsd1r8fh4yf6axc11yf2hd287ghzzxzy"; depends=[corpcor forecast MASS plyr Rcpp RcppArmadillo separationplot xtable]; };
@@ -11541,12 +12046,12 @@ in with self; {
   spectral_methods = derive2 { name="spectral.methods"; version="0.7.2.133"; sha256="0k8kpk94d2qzqdk3fnf6h9jmwdyp8h3klr0ilm5siwq5wkcz339l"; depends=[abind DistributionUtils foreach JBTools ncdf_tools nnet raster RColorBrewer RNetCDF Rssa]; };
   spectralAnalysis = derive2 { name="spectralAnalysis"; version="3.12.0"; sha256="0mz01hx86qi65k6vzz9k1j9q7gi10dh14cqvrlfy93f3kmi52q0x"; depends=[baseline BiocGenerics data_table ggplot2 hNMF jsonlite magrittr NMF nnls plotly plyr RColorBrewer signal viridis]; };
   spectralGP = derive2 { name="spectralGP"; version="1.3.3"; sha256="1jf09nsil4r90vdj7n1k6ma9dzzx3bwv0fa7svil9pxrd2zlbkbs"; depends=[]; };
-  spectrolab = derive2 { name="spectrolab"; version="0.0.6"; sha256="0pzisyi64f9wm79qxw22rmgm6lsgn6jqavxh688yrm94nnn1qv5h"; depends=[devtools prospectr RColorBrewer shiny shinyjs]; };
+  spectrolab = derive2 { name="spectrolab"; version="0.0.8"; sha256="1hjvi9na94f7n7yr64p0bvh0mzckwmfh36d6zxisrxr08zxwyxzz"; depends=[devtools prospectr RColorBrewer shiny shinyjs usethis]; };
   speedglm = derive2 { name="speedglm"; version="0.3-2"; sha256="1b25zimk0z7ad62yacqdg0zk0qs0jja4i918ym942xfw4j1z3jjz"; depends=[MASS Matrix]; };
-  spef = derive2 { name="spef"; version="1.0-7"; sha256="006qp0qsqrlbbbv4b86ikqz1ig0php0cahqz4c9n3js1kxwsdi7d"; depends=[BB ggplot2 nleqslv plyr sm SQUAREM survival]; };
+  spef = derive2 { name="spef"; version="1.0.8"; sha256="1c4hpm19zqh869z8qbixkfbidnygc3fy91d0m2l4bp2s6bq1wdnz"; depends=[BB ggplot2 nleqslv plyr sm SQUAREM survival]; };
   speff2trial = derive2 { name="speff2trial"; version="1.0.4"; sha256="0dj5mh2sdp6j4ijgv14hjr39rasab8g83lx1d9y50av11yhbf2pw"; depends=[leaps survival]; };
   spellcheckr = derive2 { name="spellcheckr"; version="0.1.2"; sha256="09snc1ymzr4njnr3w502b84dqwjjd414higjxqi48jvh27br5k1l"; depends=[data_table dplyr stringr]; };
-  spelling = derive2 { name="spelling"; version="1.1"; sha256="10zhzbpyjw5lkg4iyjwgs5xp2c8bgwyzjg146fcml6cjs6xhl8ni"; depends=[commonmark hunspell knitr xml2]; };
+  spelling = derive2 { name="spelling"; version="1.2"; sha256="1gdxxwz0n2z05d8xqk0kcvv2zffa810hda57i23zsysbrpn751s4"; depends=[commonmark hunspell knitr xml2]; };
   spemd = derive2 { name="spemd"; version="0.1-1"; sha256="1aw8dg2fm8qd95bgim2kjwp7ax4b2g78521llsxv7fhdj9hl7rgw"; depends=[MBA sp spdep]; };
   sperich = derive2 { name="sperich"; version="1.5-7"; sha256="1apgq5nsl6nw674dy7bc7r7z962wcmqsia5n67a8n6c5lcgcif3f"; depends=[foreach rgdal SDMTools sp]; };
   sperrorest = derive2 { name="sperrorest"; version="2.1.5"; sha256="126vwk3bxs27gblakc5nplj0k90a21gks9d0kbyanlxc2ihsy243"; depends=[doFuture foreach future future_apply gdata glue magrittr pbapply pbmcapply purrr ROCR rpart stringr]; };
@@ -11563,35 +12068,37 @@ in with self; {
   spider = derive2 { name="spider"; version="1.5.0"; sha256="1y034v42jxjl3vj87iz5kaizq7fwppmn56z7yyvrrmk5ps4nqr1j"; depends=[ape pegas]; };
   spiderbar = derive2 { name="spiderbar"; version="0.2.1"; sha256="1mm9g58riyjxpfwjj28shlw9zlycsgcxl6xw8im0gm815v2plyhv"; depends=[Rcpp]; };
   spiders = derive2 { name="spiders"; version="1.2"; sha256="1qklm178bgkgpvrjf024jphsdh9can8300sf0702l4h0rk2daqbq"; depends=[plyr]; };
-  spikeSlabGAM = derive2 { name="spikeSlabGAM"; version="1.1-11"; sha256="1f16jvdj6kbiiypnbbj10nj7l88kkrxasrribqpjv7ai62dlximn"; depends=[akima cluster coda ggplot2 gridExtra MASS MCMCpack mvtnorm R2WinBUGS reshape scales]; };
+  spikeSlabGAM = derive2 { name="spikeSlabGAM"; version="1.1-14"; sha256="1ha2ngs5jkrcd3ay26vynrd31fqf9pva5r0p954dyfbpbinizxgf"; depends=[akima cluster coda ggplot2 gridExtra MASS MCMCpack mvtnorm R2WinBUGS reshape scales]; };
   spikes = derive2 { name="spikes"; version="1.1"; sha256="080sna0sgii61kai5sirs6cijnvk1012djwfw705di9y2lvk1hqk"; depends=[emdbook]; };
   spikeslab = derive2 { name="spikeslab"; version="1.1.5"; sha256="0dzkipbrpwki6fyk4hqlql3yhadwmclgbrx00bxahrmlaz1vjzh2"; depends=[lars randomForest]; };
-  spind = derive2 { name="spind"; version="2.1.3"; sha256="173jpyq13vdhcwbxwx188fp7jg8l67yh6kxlai13z8lqnlpl1xqh"; depends=[gee geepack ggplot2 lattice MASS RColorBrewer rje splancs stringr waveslim]; };
+  spind = derive2 { name="spind"; version="2.2.0"; sha256="1qswvj8hcjds3mjffzlxq87g79gijsk3mw26lfr81vyf5zmwm4w4"; depends=[gee geepack ggplot2 lattice MASS RColorBrewer rje rlang splancs stringr waveslim]; };
   spinyReg = derive2 { name="spinyReg"; version="0.1-0"; sha256="0kbg7rncrrl5xdsaw9vj909x97mfp77mjnvghczplmnwmmanyn72"; depends=[]; };
   splancs = derive2 { name="splancs"; version="2.01-40"; sha256="0qs3lwyllrkahnvqbm8bzrf03bm9zk4s7p1n19s638y4xf0l6x3r"; depends=[sp]; };
   splashr = derive2 { name="splashr"; version="0.4.1"; sha256="1gydnl6qdkqxvgzy3j6n8y4nan4wz6p7wybcgnm5p37n7q6m2rhk"; depends=[curl docker formatR HARtools httr jsonlite lubridate magick openssl purrr scales stringi xml2]; };
   splines2 = derive2 { name="splines2"; version="0.2.8"; sha256="0ygzqq0swhcss5v8bn7qg98fpvp3wibbnbzkbpw4nvfd8bg51m1v"; depends=[]; };
+  splinetree = derive2 { name="splinetree"; version="0.1.0"; sha256="14bqdad538nm4vps43gpyq3c9lv5hl28064mq9vyldgvvbdr40w2"; depends=[ggplot2 mclust mosaic nlme rpart treeClust]; };
   splitFeas = derive2 { name="splitFeas"; version="0.1.0"; sha256="1cfiis32h5kkp8r1mndmj4xss9gw96vdzk7q68q3jhbwqiaxp9rp"; depends=[corpcor matrixStats]; };
   splitfngr = derive2 { name="splitfngr"; version="0.1.1"; sha256="0gz65acnkil9xjspl2kzpzyhj7lslga9g3p0k79xh25ia6qal5ws"; depends=[lbfgs]; };
   splithalf = derive2 { name="splithalf"; version="0.3.1"; sha256="01ip3brnlyxlxr1hmnmc2w6jg4vm5gjk8fwavclmv7m7hr2bb4xh"; depends=[dplyr tidyr]; };
-  splitstackshape = derive2 { name="splitstackshape"; version="1.4.4"; sha256="0vhgb4pysp7hbph7kq8b38m4gqhal40j4p7gij2wrc2rajspzhkq"; depends=[data_table]; };
-  splm = derive2 { name="splm"; version="1.4-10"; sha256="0zz28mfs84nqyvl1l0ba7yrhgcxxzw1v0542jc39h4pr537yz1nc"; depends=[bdsmatrix ibdreg MASS Matrix maxLik nlme plm spam spdep]; };
+  splitstackshape = derive2 { name="splitstackshape"; version="1.4.6"; sha256="03w6h64ga4zqilffdway4l38l5cbman4yrspkzhbigds12aqz25r"; depends=[data_table]; };
+  splm = derive2 { name="splm"; version="1.4-11"; sha256="15app94mxs6xlmqqhpa0q041skc4n4l2wfi6pmmhwinrgcqgncln"; depends=[bdsmatrix ibdreg MASS Matrix maxLik nlme plm spam spdep]; };
   splot = derive2 { name="splot"; version="0.4.0"; sha256="1g6n10pjjfhxa8sycr1iamwfdhjhp6g2zn5dkynfhg9j7v0dxnyf"; depends=[]; };
   spls = derive2 { name="spls"; version="2.2-2"; sha256="11xp6wnxizc8g91ci9fd7lbjc8pin84c9ak8lr8yg2jyd2l351j9"; depends=[MASS nnet pls]; };
   splus2R = derive2 { name="splus2R"; version="1.2-2"; sha256="0xrbj8vxy0pc6hl7m8abv71d3hjw47cl51s7j7priadyqczkq6sz"; depends=[]; };
   splusTimeDate = derive2 { name="splusTimeDate"; version="2.5.0-141"; sha256="1z29djg6az8dl47w0b9fpfwhng74xnbh5bq1asv55i8kdm1a4v1s"; depends=[]; };
   splusTimeSeries = derive2 { name="splusTimeSeries"; version="1.5.0-75"; sha256="14bg0yzwk3v0b1qrlfaxv48dpk380ha6wb2w4k02c9vmb51ysmw0"; depends=[splusTimeDate]; };
-  spm = derive2 { name="spm"; version="1.1.0"; sha256="0xx1g6ir0sanj2p6xgsdghymx1iy2bzsany2j87q49y5hah7349j"; depends=[biomod2 gbm gstat psy randomForest ranger sp]; };
-  spm12r = derive2 { name="spm12r"; version="2.7.4"; sha256="0v0zmsbzk6446n1yipz3w99n0n4yya6idff3gfyj7fgq10pcalgz"; depends=[git2r matlabr neurobase oro_nifti R_utils]; };
-  spmoran = derive2 { name="spmoran"; version="0.1.4"; sha256="0b58c2v57qj14icd577mpsgxwa84lyib4v9qxcbl26im4dhikmfm"; depends=[doParallel fields foreach ggplot2 Matrix vegan]; };
+  spm = derive2 { name="spm"; version="1.1.1"; sha256="0yz1fmh25yv5rdh5ny9xm3k177650ll03bp6pd1d2p8dgqyimv15"; depends=[biomod2 gbm gstat psy randomForest ranger sp]; };
+  spm12r = derive2 { name="spm12r"; version="2.8.0"; sha256="1f18f4z017j98kihixjsi9lngxp4fz2bnslfb0xqjzy7wq8d3y6x"; depends=[git2r matlabr neurobase oro_nifti R_utils]; };
+  spmoran = derive2 { name="spmoran"; version="0.1.6"; sha256="15cz3ivs20yspdz36279gjcc4w4lr5anb5dyyl96lvz6gjdacb4g"; depends=[doParallel fields foreach ggplot2 Matrix rARPACK spdep vegan]; };
   spnet = derive2 { name="spnet"; version="0.9.1-0"; sha256="1fy0fpgz2k985brfqyza1l49y0w2j9z308n542pgmkzqsnsdscpw"; depends=[shape sp]; };
   spnn = derive2 { name="spnn"; version="1.1"; sha256="0i77lpxrfa1jxi9znlmn5knmcjpf17q4hf8999b1x8lhqlhiizc1"; depends=[MASS]; };
   spocc = derive2 { name="spocc"; version="0.8.0"; sha256="00wm3fkwzcma847kfxliap66sr0i6vfr0kpkvcdjidgk3z51y3bw"; depends=[crul data_table jsonlite lubridate rbison rebird rgbif ridigbio rvertnet tibble whisker wicket]; };
   spongecake = derive2 { name="spongecake"; version="0.1.2"; sha256="13fxizbfjvqkhkmxk5bwv2fj2xyjkbxrxicpdgwpg0wsk4dhj3s8"; depends=[ggplot2 jpeg magrittr plyr]; };
   sporm = derive2 { name="sporm"; version="1.1"; sha256="07sxz62h4jb7xlqg08sj4wpx121n9jfk65196mnxdvb36lqmb4hp"; depends=[]; };
-  spotGUI = derive2 { name="spotGUI"; version="0.2.0"; sha256="05x8i1295qjdzyr1ri5c85lgcmj3sahamdwgzknf87dsc9r4hjcz"; depends=[gridExtra httpuv plotly rclipboard rhandsontable shiny shinyBS shinydashboard shinyjs smoof SPOT XML]; };
+  sport = derive2 { name="sport"; version="0.1.1"; sha256="0sqlnapmfdmpsxs5gapcw8k4dbc5jfc48qa6lirvfqz85yg2xzxs"; depends=[data_table ggplot2 Rcpp]; };
+  spotGUI = derive2 { name="spotGUI"; version="0.2.1"; sha256="1z664ricdsn8c29ks6hslm89f0qq6ls94pz4k256427cs95pk3ay"; depends=[gridExtra httpuv plotly rclipboard rhandsontable shiny shinyBS shinydashboard shinyjs smoof SPOT XML]; };
   spotifyr = derive2 { name="spotifyr"; version="1.0.0"; sha256="1f7sv6qc8bim8vkcsma96zdzd1ci73dpag2dp27mqjcbh716xfy0"; depends=[dplyr httr lubridate purrr tidyr]; };
-  spp = derive2 { name="spp"; version="1.15.4"; sha256="0gjg0g30y9w445mimrd29s44ryla1bmh1mdwj4hb85s1yi1l4h25"; depends=[BH caTools Rcpp Rsamtools]; };
+  spp = derive2 { name="spp"; version="1.15.5"; sha256="097rb34kk20varsdf0d9gf3k2hxbislsirzgjm61ksrzmj96fj0w"; depends=[BH caTools Rcpp Rsamtools]; };
   sppmix = derive2 { name="sppmix"; version="1.0.2"; sha256="1924lrxjlijlbvjbkkwb3pfa4klg49ph6hz66b7kyy1371wa2b9y"; depends=[fields ggplot2 mvtnorm Rcpp RcppArmadillo rgl spatstat]; };
   spray = derive2 { name="spray"; version="1.0-3"; sha256="0zy2dwzk33cwch0pdhhsyiy169z39iij3zvvjg81gxa29pq0h1ab"; depends=[magic partitions Rcpp]; };
   sprex = derive2 { name="sprex"; version="1.4.1"; sha256="14idml4mipd4wyza7hqf49ww4dparmwaps35hxm8jg5h0w1pgh7j"; depends=[swfscMisc]; };
@@ -11603,7 +12110,7 @@ in with self; {
   spsi = derive2 { name="spsi"; version="0.1"; sha256="0q995hdp7knic6nca0kf5yzkvv8rsskisbzpkh9pijxjmp1wnjrx"; depends=[plot3D]; };
   spsurvey = derive2 { name="spsurvey"; version="3.4"; sha256="0bi2d5jfqbnhhfhs79wid7ksg77vh8r5r8q2g4zbzpjgc9c67lj4"; depends=[deldir foreign Hmisc MASS rgeos sp]; };
   spt = derive2 { name="spt"; version="2.5.1"; sha256="04j38d2b35p4798znnc49vqrg8r8bygwi07vybfj3nzimlp2mkrn"; depends=[]; };
-  sptemExp = derive2 { name="sptemExp"; version="0.1.1"; sha256="0a4y355j24sll8jmm17lh4j13k21b3nlalsxzpzx2gp5xw1x7jr6"; depends=[automap BayesX BayesXsrc bcv deldir doParallel foreach limSolve ncdf4 plyr R2BayesX raster Rcpp RcppEigen rgdal rgeos sp SpatioTemporal]; };
+  sptemExp = derive2 { name="sptemExp"; version="0.1.3"; sha256="1j5c63mywv92c2zyqaa1rp22s5dmsj0as1f3q93455wjvvr42sz6"; depends=[automap BayesX BayesXsrc bcv deldir doParallel foreach limSolve ncdf4 plyr R2BayesX raster Rcpp RcppEigen rgdal rgeos sp SpatioTemporal]; };
   sptm = derive2 { name="sptm"; version="17.12-7"; sha256="1l5in0jkqg44rr2id3h25jrfbn7x855p31z338hnmdpfwkpm2b1a"; depends=[kyotil survey survival]; };
   spuRs = derive2 { name="spuRs"; version="2.0.2"; sha256="00c0hnyrcbkbj269czxbfgmgi88y0vxzm79sxclllkzr9rdd1p53"; depends=[lattice MASS]; };
   spup = derive2 { name="spup"; version="1.3-1"; sha256="0xq9z9iy3bwqhzq783qydgmczxvh7knkk9vdvwnbpbk0rbjgq3kn"; depends=[gstat magrittr mvtnorm purrr raster whisker]; };
@@ -11614,7 +12121,7 @@ in with self; {
   squash = derive2 { name="squash"; version="1.0.8"; sha256="1x1rw0ny2kas0x8y5vv9czyqmwml7s5d2c8a33vqap0x8q52r4z6"; depends=[]; };
   squid = derive2 { name="squid"; version="0.1.1"; sha256="0qv9lazgiqazhq096ybmllalm2l2h794ry4p1r93c10msxg37sdp"; depends=[arm data_table ggplot2 lme4 MASS shiny]; };
   sra = derive2 { name="sra"; version="0.1.1"; sha256="03nqjcydl58ld0wq1f9f5p666qnvdfxb5vhd584sdilw1b730ykd"; depends=[]; };
-  srp = derive2 { name="srp"; version="1.0.0"; sha256="10mpyy8q419dw0zd96l0z8lkxpcyn1l5fvnyvr3n0lyl6jmf91sy"; depends=[fda mgcv]; };
+  srp = derive2 { name="srp"; version="1.1.0"; sha256="1655p3f7y50qjprm03gp5vffgnkin0c7ahzcrj6s8qfrd6gh2vsp"; depends=[fda mgcv]; };
   srvyr = derive2 { name="srvyr"; version="0.3.3"; sha256="0xarb92xhsb3c6g45lqq9kgp5yy0y9psi7yrn7yvv1a130lwzs40"; depends=[dplyr magrittr rlang survey tibble]; };
   ss3sim = derive2 { name="ss3sim"; version="0.9.5"; sha256="0rdb49bfxvyh0jrqycrv1hxvh7y4kvw81jccjg5ma734x44q0vm5"; depends=[bbmle dplyr foreach ggplot2 gtools lubridate magrittr plyr r4ss]; };
   ssa = derive2 { name="ssa"; version="1.2.1"; sha256="10x58c57pa9x6svm4h4xrss72ikin9lpf3ihjwmnkgnaicvsd0bx"; depends=[iterators]; };
@@ -11622,19 +12129,19 @@ in with self; {
   ssc = derive2 { name="ssc"; version="2.0.0"; sha256="0w7c0blqny7dyjh1a6l9lr7nysgpmasfqbf7wf368rwmv59pk0b3"; depends=[proxy]; };
   sscor = derive2 { name="sscor"; version="0.2"; sha256="1kcrr90cxg6k4qkc3pidhkwf4dsnlgbxczxigr2afwpd9cpf104c"; depends=[mvtnorm pcaPP robustbase]; };
   ssd = derive2 { name="ssd"; version="0.3"; sha256="1z61n9m6vn0ijawyz924ak0zfl9z13jsb4k4575b7c424ci2p6gy"; depends=[]; };
+  ssdtools = derive2 { name="ssdtools"; version="0.0.2"; sha256="193b7qq57vzhv45bvnqz0vh8z89zm83gq8c6ayadw8sbxcras4rs"; depends=[actuar checkr dplyr FAdist fitdistrplus ggplot2 magrittr plyr pryr purrr scales tibble VGAM]; };
   ssfa = derive2 { name="ssfa"; version="1.1"; sha256="0fkyalhsjmx2sf8xxkppf4vd272n99nbkxh1scidrsgp4jk6z7fx"; depends=[Matrix maxLik sp spdep]; };
   ssfit = derive2 { name="ssfit"; version="1.1"; sha256="1fais0msi2ppgfp0vbx3qri7s9zs51i7n90w36xkwwac4f46bq5y"; depends=[survey]; };
-  ssgraph = derive2 { name="ssgraph"; version="1.4"; sha256="1k1ignb6gsjwwsqlkxjlr3pm6avzf9z3aj069f6y0hglz3g74qv0"; depends=[BDgraph igraph Matrix]; };
-  ssh = derive2 { name="ssh"; version="0.2"; sha256="12v5yfkaqlbixifw6sfdbjw88fc604sryg4ygml7k383nr8rpklf"; depends=[getPass]; };
+  ssgraph = derive2 { name="ssgraph"; version="1.5"; sha256="0d8zfk6q3q2krjyhkpb7h08cmgx7hsw4q7qhpzsbb3pjma0pkad7"; depends=[BDgraph igraph Matrix]; };
+  ssh = derive2 { name="ssh"; version="0.3"; sha256="0javjjl8bay18hg69fwwkmkzfin42yqlcafw0g6w9wslbm5a7fxh"; depends=[getPass]; };
   ssh_utils = derive2 { name="ssh.utils"; version="1.0"; sha256="08313zzzgcyvzkrkq0w0yf748ya1a9shx5xnan5891v0lah9v0b1"; depends=[stringr]; };
   ssize_fdr = derive2 { name="ssize.fdr"; version="1.2"; sha256="0y723lwsnmk3rxbhlsrny9hiy07a5p255ygy9qkj6mri64gk1hby"; depends=[]; };
   ssizeRNA = derive2 { name="ssizeRNA"; version="1.2.9"; sha256="1916r0hmhpfa0p1s8myqk8g4i8fgjqkm4wvpb4nf3sl69kfdva95"; depends=[Biobase edgeR limma MASS qvalue ssize_fdr]; };
-  sskm = derive2 { name="sskm"; version="1.0.0"; sha256="1qji34v66qj4k9axy5i2lf3j5zps8sjhwk3h3mqfln3pi9z6gmv8"; depends=[fpc sparcl]; };
   ssmn = derive2 { name="ssmn"; version="1.1"; sha256="1rab9yjb05g5rphqlhwvdwmsyqlv1f4m0rqxfv8c5pbh170nbwbc"; depends=[mnormt moments sn truncdist]; };
   ssmrob = derive2 { name="ssmrob"; version="0.4"; sha256="1inndspir7571f54kalbj0h599v9k6dxdmp0n1l5r3a62vn45hd3"; depends=[MASS mvtnorm robustbase sampleSelection]; };
   ssmsn = derive2 { name="ssmsn"; version="0.2.0"; sha256="0fzqdkqhj5hh8pzcwh7i0rglgdq22a5mriyis8r1vhlkdc7n5m39"; depends=[MCMCpack]; };
   sspline = derive2 { name="sspline"; version="0.1-6"; sha256="0d6ms8szyn39c7v0397d5ar2hrl8v1l2b7m8hlj37hgp70b9s55h"; depends=[]; };
-  sspse = derive2 { name="sspse"; version="0.5-5"; sha256="07656miqrv9g5nn3ahyfj7wb010cwkr3qjhysbsih0p43dwczq0y"; depends=[coda]; };
+  sspse = derive2 { name="sspse"; version="0.6"; sha256="1296893wgg0s6z5bv9a3k39gbxazvljl4dxiv4ma1s73nhz0xan9"; depends=[coda RDS scam]; };
   ssrm_logmer = derive2 { name="ssrm.logmer"; version="0.1"; sha256="1i9rrsixl3swd04w1gf9gf1r2wb9nkvwhc8ld4bx4zxzm1031f67"; depends=[sfsmisc statmod]; };
   sss = derive2 { name="sss"; version="0.1-0"; sha256="1qg56g60h8c52l8lpxihxsdgnqkxiag1mzh3p388r9hhff7g3g0k"; depends=[assertthat xml2]; };
   sssc = derive2 { name="sssc"; version="1.0.0"; sha256="00m5zfd3jnbxa8x76v4pfyl4qdfq90n8rqx4hngany0ka1z5g7m6"; depends=[changepoint e1071 ggplot2 VGAM]; };
@@ -11643,17 +12150,18 @@ in with self; {
   ssym = derive2 { name="ssym"; version="1.5.7"; sha256="0l5d921vlhd4qwddllrgcxpq3bhivvy5ikh3ixdy3s140rzpgwrv"; depends=[Formula GIGrvg normalp numDeriv sandwich survival]; };
   st = derive2 { name="st"; version="1.2.5"; sha256="0dnyfjcz37gjjv87nrabb11gw2dlkqhq3mrxdpkzahx0w0g0q0pb"; depends=[corpcor fdrtool sda]; };
   stR = derive2 { name="stR"; version="0.4"; sha256="120k8k1l8cfy8x746808jym7lnaplgh4s3lycgyq2wia2c35r0rc"; depends=[foreach forecast Matrix quantreg rgl SparseM]; };
-  stUPscales = derive2 { name="stUPscales"; version="1.0.3.1"; sha256="0qs8lj50jrkyh4dmiinpg6dxfs68x6zlp0knr2ckpgik3v51r52z"; depends=[data_table doParallel EmiStatR foreach ggplot2 hydroGOF lattice lmom mAr moments msm xts zoo]; };
+  stUPscales = derive2 { name="stUPscales"; version="1.0.3.3"; sha256="1hby7z9j23pd0z2hvyvprjl4gglb2rg9rh5fpkqy26x24nwkgk3h"; depends=[data_table doParallel EmiStatR foreach ggplot2 hydroGOF lattice lmom mAr moments msm xts zoo]; };
   staRdom = derive2 { name="staRdom"; version="1.0.8"; sha256="15khv32jbhjq73kr60al39ppf4pps7n48220jhp7sc04fcbi8fwd"; depends=[data_table doParallel dplyr drc eemR foreach GGally ggplot2 matrixStats multiway plotly pracma readr stringr tibble tidyr zoo]; };
   staTools = derive2 { name="staTools"; version="0.1.0"; sha256="1ksr0sjkhlwh0fkwcxjcxzbyxs1g78m4spkhrmgdpfzmk5zskqf9"; depends=[magicaxis Rcpp VGAM]; };
-  stability = derive2 { name="stability"; version="0.2.0"; sha256="154dp26aghznibnp9h7j86hi30caylvyxp87jkf2p7cb4l3qn5r4"; depends=[dplyr ggfortify ggplot2 lme4 magrittr matrixStats reshape2 rlang scales tibble tidyr]; };
+  stability = derive2 { name="stability"; version="0.5.0"; sha256="0mz7ikfhpfbdcp72klq7fi4zfmx2w18gz46yhwywcc4dyi277m11"; depends=[dplyr ggfortify ggplot2 lme4 magrittr matrixStats reshape2 rlang scales tibble tidyr]; };
   stable = derive2 { name="stable"; version="1.1.3"; sha256="1fbyba91qi536mbb7hs6bvi1zgwdjvnv6ih7ykyyhkxk85cmfmq3"; depends=[rmutil stabledist]; };
   stabledist = derive2 { name="stabledist"; version="0.7-1"; sha256="0scar396wiq6wkbkvwp4qrxqc1m075y56p37i6iry5rw796p1i86"; depends=[]; };
+  stablelearner = derive2 { name="stablelearner"; version="0.1-1"; sha256="19mvk6dzg8zg0nj1q4sraqg6h3zj8xvnfc0jql1xiqas9wcypx7d"; depends=[e1071 MASS partykit]; };
   stablespec = derive2 { name="stablespec"; version="0.3.0"; sha256="0m143cq0baj2lyakhr31mqk2lg78jzpdlpv2bhwz6bzzip7mqi22"; depends=[foreach ggm graph matrixcalc nsga2R polycor Rgraphviz sem]; };
   stabs = derive2 { name="stabs"; version="0.6-3"; sha256="17sa0sjxf6h7gx1ga1pxhv17yrz3qisaivbf5cbc3asvshhswqg9"; depends=[]; };
   stackoverflow = derive2 { name="stackoverflow"; version="0.1.2"; sha256="1psw96iscgsx11drmcnh0yjg2jjcaa4akmywh337i6gbgam8kj61"; depends=[]; };
-  stacomiR = derive2 { name="stacomiR"; version="0.5.3.1"; sha256="1d05k8s8239d615vqjs6r6rx7r3vqc5gmms8iqds6lhr59bxv83g"; depends=[dplyr ggplot2 gWidgets gWidgetsRGtk2 Hmisc intervals lattice lubridate magrittr mgcv RColorBrewer reshape2 RGtk2 RODBC RPostgreSQL sqldf stacomirtools stringr xtable]; };
-  stacomirtools = derive2 { name="stacomirtools"; version="0.5.2"; sha256="1a33yy594699b05lb32zwx6yhmvxzwly6vvf8xzqg6lac64p26r5"; depends=[RODBC xtable]; };
+  stacomiR = derive2 { name="stacomiR"; version="0.5.4.0"; sha256="0spkv1xx6mh2v41pba0gasymsb80xvqi42a3v0qqvd0ib8sgj2k7"; depends=[dplyr ggplot2 gWidgets gWidgetsRGtk2 Hmisc intervals lattice lubridate magrittr mgcv RColorBrewer reshape2 RGtk2 RODBC RPostgreSQL sqldf stacomirtools stringr xtable]; };
+  stacomirtools = derive2 { name="stacomirtools"; version="0.5.3"; sha256="00zpsfrw0gcjbjr3xdxf2wacrr1zfw6wq7a2ycq32pbh2smbkz4k"; depends=[RODBC xtable]; };
   stagePop = derive2 { name="stagePop"; version="1.1-1"; sha256="0949r5ibl3sb10sr5xsswxap3wd824riglrylk7fx43ynsv5hzpy"; depends=[deSolve PBSddesolve]; };
   stam = derive2 { name="stam"; version="0.0-1"; sha256="1x1j45fir64kffny0nssb2hwn4rcp8gd2cjv6fw4yy0l4d0xi5iv"; depends=[np sp]; };
   stampr = derive2 { name="stampr"; version="0.2"; sha256="10mc71kgnw5712q2gvzd4bmjaw1879r7s599hfsjap21idqb2k2m"; depends=[deldir maptools raster rgdal rgeos sp spdep]; };
@@ -11663,21 +12171,22 @@ in with self; {
   stargazer = derive2 { name="stargazer"; version="5.2.2"; sha256="1pij76r60hkjlvxw6zw1v7gkib81smiqmjq7mwszn6xclq9lmsvh"; depends=[]; };
   starma = derive2 { name="starma"; version="1.3"; sha256="07r0kyabhgbm2v39fcrw0qhxcxj9a9cb45g9chzcnn9qmvramcwx"; depends=[ggplot2 Rcpp RcppArmadillo scales]; };
   starmie = derive2 { name="starmie"; version="0.1.2"; sha256="06cvl8gk78c55kcf4rd27d4gfzh2lcg7ldynvx4hclvbw7ak9zdq"; depends=[combinat data_table ggdendro ggplot2 ggrepel gridExtra iterpc label_switching MCL MCMCpack proxy purrr readr stringr tidyr]; };
+  stars = derive2 { name="stars"; version="0.2-0"; sha256="0fsl88bg0mxqvijyj7q7a05p1r48lwamhz9vwdj7icv8alz0higr"; depends=[abind classInt ncdf4 ncmeta rlang sf units]; };
   startR = derive2 { name="startR"; version="0.0.1"; sha256="12y57n3yip5rz4rln41896a15zv5b4c67k164282fh1p6ww9gr3r"; depends=[abind bigmemory future]; };
-  startup = derive2 { name="startup"; version="0.10.0"; sha256="1j9vb1008sg6wwbz8ilxqnqzy7b18cscxiyaijszzx4ygxmcq39j"; depends=[]; };
-  startupmsg = derive2 { name="startupmsg"; version="0.9.4"; sha256="1r9dqrfznsrj7s11m56hkzgfnw3qcgzh07pqipl007zr2av9xwqw"; depends=[]; };
+  startup = derive2 { name="startup"; version="0.11.0"; sha256="1ibplrnzqv0z7mm8c3py5prlp4wg95xhk1jxv5i3z1w9ndqimbfv"; depends=[]; };
+  startupmsg = derive2 { name="startupmsg"; version="0.9.5"; sha256="1dn7yr957qa47c0hxdq2c27qvdpg9iy5i0lwz4kijz9yph2daahh"; depends=[]; };
   statGraph = derive2 { name="statGraph"; version="0.1.0"; sha256="13wfylb92lzw08fn3p000v87abs7ij2rb82np1rkgsl8w2kica73"; depends=[igraph MASS]; };
   statar = derive2 { name="statar"; version="0.6.5"; sha256="0vmdrdq6db16vfl0rb39x8yfnbdzpcrvywfgp4lss6jby3nvjwd9"; depends=[data_table dplyr ggplot2 lazyeval matrixStats rlang stringr tidyr]; };
   statcheck = derive2 { name="statcheck"; version="1.3.0"; sha256="0ivybdcrymlsfv6pg6p5bv70qdvgxf2vgp0kf4r0pf2fcvav1mcp"; depends=[ggplot2 plyr rmarkdown]; };
   statebins = derive2 { name="statebins"; version="1.2.2"; sha256="0qfs796dk5x983qah32w3npv9mxzljp3g7kffdd0ansn3z7i1zbb"; depends=[ggplot2 gridExtra RColorBrewer scales]; };
   states = derive2 { name="states"; version="0.2.1"; sha256="1f0cwv1jkl4nw0p31p147g71nira5f4hwq8lhjnmns28xq04by24"; depends=[dplyr lubridate]; };
   statesRcontiguous = derive2 { name="statesRcontiguous"; version="0.1.0"; sha256="0yzi6ycfj4cc4q0zzzckdz65wp9m4yx6fi7kp9nssj9pj6a8xlrp"; depends=[dplyr magrittr sf]; };
-  stationaRy = derive2 { name="stationaRy"; version="0.4.1"; sha256="1iyzg40vi1l4s68kh50in1p97pcb28z6n932cgrx5k1rv3api13g"; depends=[downloader dplyr leaflet lubridate plyr progress readr stringr]; };
-  statip = derive2 { name="statip"; version="0.1.5"; sha256="1gyn86kg96yrs9drc23xabf4s8ii32hgjla310sy6pd7c97bwqgf"; depends=[bazar dplyr]; };
+  stationery = derive2 { name="stationery"; version="0.98.5.5"; sha256="0c7v9nhbcmdi4c2i185j3fbckqcjr6f0x1pw5dchsp4cw59nr1mc"; depends=[knitr kutils rmarkdown]; };
+  statip = derive2 { name="statip"; version="0.2.0"; sha256="012caxqa04qv3z49cz09qzh9crfbdc4il2d2b96l5d3qnqv9xbh9"; depends=[bazar clue rpart]; };
   statmod = derive2 { name="statmod"; version="1.4.30"; sha256="07v4x8af60alcw6vbiwf5fp25bhra61kvxz9kqx64lszm0i1fb4x"; depends=[]; };
-  statnet = derive2 { name="statnet"; version="2016.9"; sha256="1j5z7awvac3sb66ma1lrc9j23m6hmzqfnqxc0znsm36h324y3y6s"; depends=[ergm ergm_count network networkDynamic sna statnet_common tergm]; };
+  statnet = derive2 { name="statnet"; version="2018.10"; sha256="1v0l8bjnqzz9b0b32b31kqmasw0aw4hnlwidlr3xfhbd9clyhyiq"; depends=[ergm ergm_count network networkDynamic sna statnet_common tergm tsna]; };
   statnet_common = derive2 { name="statnet.common"; version="4.1.4"; sha256="14dydm4c4dzc4v6ldxpn04q551nczzfablwibrd8lzgja8x9ksic"; depends=[coda]; };
-  statnetWeb = derive2 { name="statnetWeb"; version="0.4.0"; sha256="0gqvvpz9435wakpgf5jsznwgd3fix1vyabh87bnnfsm3pfs7rf2x"; depends=[ergm lattice latticeExtra network RColorBrewer shiny sna]; };
+  statnetWeb = derive2 { name="statnetWeb"; version="0.5.0"; sha256="02344i8rhjxy8ainfvf5vn39g1nk2n448l76cg74cyxv6zv4f55w"; depends=[ergm lattice latticeExtra network RColorBrewer shiny sna]; };
   statprograms = derive2 { name="statprograms"; version="0.2.0"; sha256="0m7px7fmpz2zzlfdi7rbllcjvcjp8iy94f6fa1w4xinh7vz3y6vq"; depends=[]; };
   statquotes = derive2 { name="statquotes"; version="0.2.2"; sha256="1xzc3ndddjrlyld0p4zcwwxkj7i3m3adj7c78x9l4lhlw9mxbbqg"; depends=[stringr tidytext wordcloud]; };
   statsDK = derive2 { name="statsDK"; version="0.1.1"; sha256="0insx4sivac0nfxaa11iz9dd7374g51fcndsgljj3f14zw1xyq66"; depends=[dplyr ggplot2 httr jsonlite lubridate readr stringr tibble tidyr]; };
@@ -11687,43 +12196,45 @@ in with self; {
   stddiff = derive2 { name="stddiff"; version="2.0"; sha256="0mik01a8agcdpjq4r7lcdf3w2jcy6s9gx9zl7plzvnl2r3s5xw5b"; depends=[]; };
   stdvectors = derive2 { name="stdvectors"; version="0.0.5"; sha256="0gxylknr146qyg9aj22md076cdhrsz75dg25a1hx8525cm71nwd6"; depends=[Rcpp]; };
   steadyICA = derive2 { name="steadyICA"; version="1.0"; sha256="0mcalbsgajdpk45k9vpyavn079063hw4ihkw72n9wcy5nb0da14g"; depends=[clue combinat MASS Rcpp]; };
-  steemr = derive2 { name="steemr"; version="0.0.4"; sha256="10x90l00mq1aq7xf69vl7lpax0gl9grq182ixp3iwn3pa1wifmpm"; depends=[lattice openair RCurl rlist tm VennDiagram wordcloud XML zoo]; };
+  steemr = derive2 { name="steemr"; version="0.0.5"; sha256="012kiglvdpkwd701m5brhb87bljrkvw3j3v95ga5irjlddrgww34"; depends=[RCurl XML]; };
   steepness = derive2 { name="steepness"; version="0.2-2"; sha256="0bw7wm7n2xspkmj90qsjfssnig683s3qwg1ndkq2aw3f6clh4ilm"; depends=[]; };
   stellaR = derive2 { name="stellaR"; version="0.3-3"; sha256="098sz6b8pl3fyca3g6myp97nna368xhxf8krmibadnnsr49q5zs9"; depends=[]; };
-  stellaRbase = derive2 { name="stellaRbase"; version="0.1.0"; sha256="1jwhh14wk57z8acg8vjd7m3nwq0vq4w0x9ml8zhk3gnl4czq8m04"; depends=[data_table httr RJSONIO]; };
   stemmatology = derive2 { name="stemmatology"; version="0.3.1"; sha256="1ln5cvn4yldr8xdgadlfzkgxbv6im39mdsdz597zailqnfsr576g"; depends=[cluster igraph xml2]; };
+  stepPenal = derive2 { name="stepPenal"; version="0.2"; sha256="08gizl6c606ibbv7x2rdvfw37rghkrprwszha79yngkzpajw8gql"; depends=[caret dfoptim glmnet mvtnorm pROC]; };
   stepPlr = derive2 { name="stepPlr"; version="0.93"; sha256="1i54nyz8z5vq3mzfh6h2vd1q0hsdazc4mhrj9ad0zdvn0qnz61lv"; depends=[]; };
   stepR = derive2 { name="stepR"; version="2.0-2"; sha256="0inxlgihyivfr0l4gk8zq0043l9s5w4r3x3hwjlzfwbqjkwy1rjs"; depends=[digest R_cache Rcpp]; };
-  stepp = derive2 { name="stepp"; version="3.0-11"; sha256="0jrwfvcgh3sjm3zag93kjyny2qqsyiw988vnx6jw7s31bv9g0d6s"; depends=[car survival]; };
+  stepp = derive2 { name="stepp"; version="3.2.0.0"; sha256="0fnjqbncadscv6ryvqyqf8qqgpfzh2hka5ld2zvw39mjqzy5gadi"; depends=[car survival]; };
   stepwise = derive2 { name="stepwise"; version="0.3"; sha256="1lbx1bxwkf9dw6q46w40pp7h5nkxgghmx8rkpaymm6iybc7gyir2"; depends=[]; };
   stheoreme = derive2 { name="stheoreme"; version="1.2"; sha256="14w3jcbs8y8cz44xlq8yybr2jwgk3w7s2msgjhlp1vazy8959s65"; depends=[]; };
   sticky = derive2 { name="sticky"; version="0.5.2"; sha256="0yib9llvlxyzcwam3qd3wxz91mdacvh4v888ifxwjhhjihffqvbj"; depends=[]; };
-  stilt = derive2 { name="stilt"; version="1.2.0"; sha256="1b9z64g1v5764h3y75xk1zkcv3imskvd44nqjp5m2dzmsw33nzji"; depends=[fields]; };
-  stinepack = derive2 { name="stinepack"; version="1.3"; sha256="0kjpcjqkwndqs7cyc6w62z1nnkqmhkifz2w0bi341jh0ybmak4fq"; depends=[]; };
+  stilt = derive2 { name="stilt"; version="1.3.0"; sha256="0b1bs849hw2wcvaldybxk8h8wgwl6p7x4i7winncvngmhplgrvx4"; depends=[fields]; };
+  stima = derive2 { name="stima"; version="1.2"; sha256="1784807cdscjy441f41bbqq7fx7c59c4mwwnhg1nnizybnwa993r"; depends=[rpart]; };
+  stinepack = derive2 { name="stinepack"; version="1.4"; sha256="0crl77gr4x2bz2zp0a0lqiw5iqlrcx7vj67igkbzg64d1fxai85d"; depends=[]; };
   stlplus = derive2 { name="stlplus"; version="0.5.1"; sha256="14728xsm982z9sg4rbqg307pbwqlsiyzj8z3sr9wr6fi0dayf6z5"; depends=[lattice Rcpp yaImpute]; };
   stm = derive2 { name="stm"; version="1.3.3"; sha256="1b1i4r161i92f5q63zjfghzg39bw9d2rqdxx0y6zjd8n2p0ni3wv"; depends=[data_table glmnet lda Matrix matrixStats quadprog quanteda Rcpp RcppArmadillo slam stringr]; };
   stmCorrViz = derive2 { name="stmCorrViz"; version="1.3"; sha256="1a4pckrbzsihyf1bqvw3cl0hxrc4yq1pnkgxgf4b8jday6zkxwcv"; depends=[jsonlite SnowballC stm tm]; };
   stmgp = derive2 { name="stmgp"; version="1.0"; sha256="1v6ahg4icyrz8p0lfiyi2x90allhjvcq8rycinas5mffg7xgpv7d"; depends=[MASS]; };
   stmgui = derive2 { name="stmgui"; version="0.1.6"; sha256="1fn2m5l7y3p1riw39g6r3hpjxdccygih7yipp7dvc4msl9fm4h5c"; depends=[markdown shiny shinyBS shinyjs shinythemes stm tm]; };
-  stminsights = derive2 { name="stminsights"; version="0.2.0"; sha256="0s4gnb3cb5vb4x4vmwa2dz7l7m8d0mqhrc8lmaa912s16y05y63z"; depends=[dplyr ggplot2 ggraph ggrepel huge igraph purrr scales shiny shinyBS shinydashboard shinyjs stm stringr tibble tidygraph]; };
+  stminsights = derive2 { name="stminsights"; version="0.2.2"; sha256="13b94z4wp24hbmwz1hkyds2p7adp48rvp6rd7lh0l3qm0k3q6krb"; depends=[dplyr ggplot2 ggraph ggrepel huge igraph purrr readr scales shiny shinyBS shinydashboard shinyjs stm stringr tibble tidygraph]; };
   stoRy = derive2 { name="stoRy"; version="0.1.2"; sha256="1n2ivdv6fa3qkk2xhgcy8cixpbw6mijr4p8q34q8d9fvh9qs9g11"; depends=[data_tree R6]; };
   stocc = derive2 { name="stocc"; version="1.30"; sha256="0xpf9101094l5l75p9lr64gwh2b8jh4saw6z6m2nbn197la3acpw"; depends=[coda fields Matrix rARPACK truncnorm]; };
   stochprofML = derive2 { name="stochprofML"; version="1.2"; sha256="0gqfm2l2hq1dy3cvg9v2ksphydqdmaj8lppl5s5as2khnh6bd1l1"; depends=[MASS numDeriv]; };
   stochvol = derive2 { name="stochvol"; version="1.3.3"; sha256="0cg61djjfw4jmq71g8kddrihdy9n2vlpzlf7kl2f3p8njc1f8kk2"; depends=[coda Rcpp RcppArmadillo]; };
   stockR = derive2 { name="stockR"; version="1.0.68"; sha256="0pgyxh19csv21vgji1sjpqaaqb1wwz62mnsf85a97ba9aph9lxwb"; depends=[gtools]; };
-  stocks = derive2 { name="stocks"; version="1.1.3"; sha256="0zpmx32dxv672ifk1m725ww286g4r09dvxvnk146vpwlk4mk11d0"; depends=[dvmisc Hmisc lubridate quantmod rbenchmark RColorBrewer Rcpp zoo]; };
+  stocks = derive2 { name="stocks"; version="1.1.4"; sha256="0b6rl7pfkgzbpwnv7zzkr36hs5f1zb60d16ijslf7g9m25vvcyg6"; depends=[dvmisc Hmisc lubridate quantmod rbenchmark RColorBrewer Rcpp TTR zoo]; };
   stoichcalc = derive2 { name="stoichcalc"; version="1.1-3"; sha256="0z9fnapibfp070jxg27k74fdxpgszl07xiqfj448dkydpg8ydkrb"; depends=[]; };
   stopwords = derive2 { name="stopwords"; version="0.9.0"; sha256="050v3hq1wd3w83zrp76nv6n67qsf5fss2cbihb6waijancm7zfzh"; depends=[ISOcodes]; };
-  stormwindmodel = derive2 { name="stormwindmodel"; version="0.1.0"; sha256="1pxkb0ijx04c4bk6szxhj8lxq6x76m8pyhxpf8xq63h4gh57fxh3"; depends=[dplyr ggplot2 lubridate maps plyr stringr tidyr weathermetrics]; };
-  storr = derive2 { name="storr"; version="1.2.0"; sha256="0rsj84yfvy3y02cv0s25fq6ji4rfh7nnrpacbka0lhrxf698h5ga"; depends=[digest R6]; };
+  stormwindmodel = derive2 { name="stormwindmodel"; version="0.1.1"; sha256="16w6si2icpsyhkn0d3l6sh64nj6ynyymp7jxfwa792ds2wrz2mkm"; depends=[dplyr ggplot2 lubridate maps plyr stringr tidyr weathermetrics]; };
+  storr = derive2 { name="storr"; version="1.2.1"; sha256="0409gb6wji3cjxkdcd0wc3jvsx61h3rxd8a3nr018y8rh1rpsaj6"; depends=[digest R6]; };
   stosim = derive2 { name="stosim"; version="0.0.14"; sha256="10k8j7manskjsrjc1l44yhy682b1qh0k2jx3cs5k69j2z42mnhmk"; depends=[Rcpp]; };
-  stplanr = derive2 { name="stplanr"; version="0.2.5"; sha256="0r386bvsmglap6cxs6k3mn8bdahlbxb3qv2k4iqg2fr2r62dalf7"; depends=[curl dplyr geosphere httr igraph jsonlite lubridate lwgeom maptools nabor openxlsx R_utils raster Rcpp RcppArmadillo readr rgdal rgeos rlang sf sp stringi stringr]; };
-  stpm = derive2 { name="stpm"; version="1.6.9"; sha256="1pj8lxych7fgrimi5c237f4vi6yc51ya3zwcq0qk3py96nixcpxn"; depends=[knitcitations nloptr Rcpp RcppArmadillo sas7bdat survival]; };
+  stplanr = derive2 { name="stplanr"; version="0.2.6"; sha256="1v8x8gql4y6avxkpnjg4wb31hwim3admshwp4wcvfingxvzplxb2"; depends=[curl dplyr geosphere httr igraph jsonlite lubridate lwgeom maptools nabor openxlsx R_utils raster Rcpp RcppArmadillo readr rgdal rgeos rlang sf sp stringi stringr]; };
+  stpm = derive2 { name="stpm"; version="1.7.7"; sha256="1l40zb9qwshg7saqmgi7c49a3jd93ycrbvmysgzs0q8pl94vgcfs"; depends=[knitcitations MASS nloptr Rcpp RcppArmadillo sas7bdat survival]; };
   stpp = derive2 { name="stpp"; version="2.0-3"; sha256="18icnfrlrcibrpw7vqkrhzfx880ak24xk6llwgiqw18r929mq1hw"; depends=[ggplot2 gridExtra KernSmooth plot3D rgl rpanel spatstat splancs]; };
   strandCet = derive2 { name="strandCet"; version="1.0"; sha256="019cacj0g9f6i8v03rq7qyph7f14d8n0qw0axvczijvnk99q602a"; depends=[boot corpcor MASS minpack_lm mvtnorm numDeriv]; };
   stranger = derive2 { name="stranger"; version="0.3.3"; sha256="0p0ssba5q192g7pviv1shmh1lpcdjmzdim3rp1qs3hrd1d3pn4vq"; depends=[assertthat data_table dplyr ggplot2 tidyr]; };
   strap = derive2 { name="strap"; version="1.4"; sha256="0gdvx02w0dv1cq9bb2yvap00lsssklfnqw0mwsgblcy2j6fln7b0"; depends=[ape geoscale]; };
   strat = derive2 { name="strat"; version="0.1"; sha256="1axxrp750kjzcgxjdqfscjmryv1mkv4l23zk8k23z8l4ymhd2f5w"; depends=[Hmisc Rcpp RcppArmadillo]; };
+  stratEst = derive2 { name="stratEst"; version="0.1.0"; sha256="06xddfgddrcd0fjc2hiqmxh9i7szrvay5phhd7k5y1bdmjav7q2c"; depends=[Rcpp RcppArmadillo]; };
   strataG = derive2 { name="strataG"; version="2.0.2"; sha256="1rf1xf07yb0dzasgig9sfm4i9ggdkjgy5iiysqgdapk3sxs26c8r"; depends=[adegenet ape apex copula data_table DT ggplot2 gridExtra Hmisc pegas phangorn RColorBrewer Rcpp shiny shinyFiles survival swfscMisc]; };
   stratbr = derive2 { name="stratbr"; version="1.2"; sha256="15vkymmc61yz9szhfhc5663hfyqvh499ahwhr9mv1lhv5bikk0kb"; depends=[Rglpk snowfall stratification]; };
   strategicplayers = derive2 { name="strategicplayers"; version="1.0"; sha256="19vijrlzawd701vvk9ig7yhzbirh39dxxcwfz8ywwvxxiaky5x55"; depends=[sna]; };
@@ -11732,28 +12243,31 @@ in with self; {
   stratvns = derive2 { name="stratvns"; version="1.0"; sha256="1bw9l389lxiji4h7hrsshf24v135h6la9dg3xxjly53d4fi56ifh"; depends=[MultAlloc Rglpk sampling snowfall stratification]; };
   stream = derive2 { name="stream"; version="1.3-0"; sha256="0wj6j070wmiw50vmjs075jm7k7aaryq4qm8dnj522vr7g0ryvkdh"; depends=[animation BH clue cluster clusterGeneration dbscan fpc MASS mlbench proxy Rcpp]; };
   streamMOA = derive2 { name="streamMOA"; version="1.1-4"; sha256="09vspcz806j2f397hr8h685vy4xbx419bbha91f44s3bhks1y7fr"; depends=[rJava stream]; };
-  streamR = derive2 { name="streamR"; version="0.4.3"; sha256="174iliizvr050mm3z9gz44f264xp1kclbvq1amynqal2kv8k7yj1"; depends=[ndjson RCurl rjson]; };
+  streamR = derive2 { name="streamR"; version="0.4.4"; sha256="0xb0bzp3axflwrbxc6zsscmq8bn7qhlsk00l10qlxm4h1mh8xnlb"; depends=[ndjson RCurl rjson]; };
   streambugs = derive2 { name="streambugs"; version="1.0"; sha256="1dyh5rwi47dn584nyy7f7vg5j5nlpz7ygcl8lwkj7prahplmzg5d"; depends=[deSolve]; };
   stressr = derive2 { name="stressr"; version="1.0.0"; sha256="00b93gfh1jd5r7i3dhsfqjidrczf693kyqlsa1krdndg8f0jkyj7"; depends=[lattice latticeExtra XML xts]; };
+  strex = derive2 { name="strex"; version="0.1.2"; sha256="12hbzlkihzvmyd8qx147bk57cia2db4w9k6wh7csbbqp95cy77bi"; depends=[checkmate glue magrittr matrixStats ore purrr Rcpp rlang stringr tibble]; };
   strider = derive2 { name="strider"; version="1.1"; sha256="00r6gbvwmla5h27iyi7rdfd0kr4alxz19fd7g2ba0in3779za3sw"; depends=[BH Rcpp]; };
   stringb = derive2 { name="stringb"; version="0.1.13"; sha256="004bp75yhrgr480v9774kfq7z5l9z0761cnrwj4yk7fxygk89a1x"; depends=[backports]; };
   stringdist = derive2 { name="stringdist"; version="0.9.5.1"; sha256="0gap1g9xwhp0zxqsznkc2carpvi80z03prr4q8m528684lznx2xa"; depends=[]; };
   stringformattr = derive2 { name="stringformattr"; version="0.1.2"; sha256="0x56k30clj5ajk0qg5sr8b9l0asz6ldivwr1ddy1vp1djliih1fx"; depends=[stringr]; };
-  stringi = derive2 { name="stringi"; version="1.2.3"; sha256="1sgg4krw03qkz1n4dwiya0djggk7giwd0w21qlp0pfjqi0rxq6qx"; depends=[]; };
+  stringi = derive2 { name="stringi"; version="1.2.4"; sha256="1y46xab7g1lsjmilp4hbl7pjad6pcxp66hdj8wnfdg9518h0lmq1"; depends=[]; };
   stringr = derive2 { name="stringr"; version="1.3.1"; sha256="0hq3ybz7clnifi5wdm2s6p2i0kzljdkv26blg6yphng472h8x2vs"; depends=[glue magrittr stringi]; };
-  strip = derive2 { name="strip"; version="0.1.1"; sha256="18pz6ix6d661fvg1k1yyyiiwa1gdixynmpxl725ffd9lpykmfqbw"; depends=[rlist]; };
+  strip = derive2 { name="strip"; version="0.1.7"; sha256="1nzl5513s0gfd3mhnp9xzmhaj8q46lmdpv7j5jni8f50pnm3niay"; depends=[rlist]; };
   stripless = derive2 { name="stripless"; version="1.0-3"; sha256="08mdp7kq6r5bk77j09477d1dnn7iwa346pr24b5bqsxwnbknyrsr"; depends=[lattice]; };
   striprtf = derive2 { name="striprtf"; version="0.5.1"; sha256="1pv67grm8fb1plsfxrfrmv0yk6cjnf44ssawddlcxy9mvg3ka5mm"; depends=[magrittr Rcpp stringr]; };
   strucchange = derive2 { name="strucchange"; version="1.5-1"; sha256="0cdgvl6kphm2i59bmnppn1y3kv65ml111bk7yzpcx7vv8wh2w3kl"; depends=[sandwich zoo]; };
   structSSI = derive2 { name="structSSI"; version="1.1.1"; sha256="06rwmrgqc4qy4x0bhlshjdsjxfmp5fr9d1wjglhlb1gbp72fmkdv"; depends=[ggplot2 igraph multtest reshape2 rjson]; };
   structree = derive2 { name="structree"; version="1.1.5"; sha256="0m14jzhmkfn8dpxjzj8xh9zf6cggqj3awnfz7zh1xlkkka91jz8d"; depends=[lme4 mgcv penalized]; };
   strum = derive2 { name="strum"; version="0.6.2"; sha256="0f5cb7cfvqhmnv4sjfr58lns4fclmr8iyka595zddy9f6dv5rqp1"; depends=[graph MASS Matrix pedigree Rcpp RcppArmadillo Rgraphviz]; };
-  strvalidator = derive2 { name="strvalidator"; version="2.0.0"; sha256="03f7clhs1hda3lkard7lbx4pfyqvhwm35r3d9sz2yksp5s78wbjk"; depends=[data_table ggplot2 gridExtra gtable gWidgets2 gWidgets2RGtk2 MASS plyr RGtk2 scales]; };
+  strvalidator = derive2 { name="strvalidator"; version="2.1.0"; sha256="15qpdbqr740bn2zimfyspj6arzigc39hdf73yy9lbk6vhiq43yyq"; depends=[data_table ggplot2 gridExtra gtable gWidgets2 gWidgets2RGtk2 MASS plyr RGtk2 scales]; };
   stsm = derive2 { name="stsm"; version="1.9"; sha256="18ypmkd7l7m7qkahb0nqf8f1m8g4irxlw48v2ms0dq1bsnhbzx7j"; depends=[KFKSDS]; };
   stsm_class = derive2 { name="stsm.class"; version="1.3"; sha256="19jrja5ff31gh5k2zqhqsyd7w2ivr4s6bkliash6x8fmd22h5zs8"; depends=[]; };
+  stuart = derive2 { name="stuart"; version="0.7.3"; sha256="0xd85ijshhsyzkm22vacjl2p7ni8x3zfypmrwmvvba5x9l82s3hi"; depends=[]; };
   stubthat = derive2 { name="stubthat"; version="1.2.1"; sha256="130naxzvswcyadwcgldvwnxxdxbfwx5vljac7901vn3ahjp75d8z"; depends=[testthat]; };
   styler = derive2 { name="styler"; version="1.0.2"; sha256="0rsbaszwr0089imcwracjss52ivjzlcba9j0sqvpza4qgd0yjmd4"; depends=[backports cli enc magrittr purrr rematch2 rlang rprojroot tibble withr]; };
-  stylo = derive2 { name="stylo"; version="0.6.7"; sha256="0l5msnv6sk90p3l7ma2q31yn93y1zj86y5hzzg2fws4r0pi09p19"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; };
+  stylest = derive2 { name="stylest"; version="0.1.0"; sha256="0dr7j9fh8kp6wsqql38s3rk596xl6m9nx0w1l5v25hv2bphidxzr"; depends=[corpus Matrix]; };
+  stylo = derive2 { name="stylo"; version="0.6.8"; sha256="1j27hyjsjs3y76lb0pn92ng23q0lk7w69vdx3429q610dixqdfim"; depends=[ape class e1071 lattice pamr tcltk2 tsne]; };
   suRtex = derive2 { name="suRtex"; version="0.9"; sha256="0xcy3x1079v10bn3n3y6lxignb9n3h57w4hhrvzi5y14x05jjyda"; depends=[]; };
   subcopem2D = derive2 { name="subcopem2D"; version="1.2"; sha256="1yrjqg3y6i5m6k0zljq1p1pciicmc1vig3qd0wxaicz708rbp3yq"; depends=[]; };
   subdetect = derive2 { name="subdetect"; version="1.1"; sha256="1bcc13avs5w9vmwyf71cnjd2kwmcavmzpwyv8gvsn61n7b4j8wlk"; depends=[]; };
@@ -11763,7 +12277,7 @@ in with self; {
   submax = derive2 { name="submax"; version="1.1.1"; sha256="0b9x55gqzw20smr3hx9izvyr0i8zv0h03hadn4c7ks7w8ga5i0kj"; depends=[mvtnorm sensitivityfull]; };
   subniche = derive2 { name="subniche"; version="0.9.7"; sha256="1jsdcaf6d38j7c0ppjyilj0jd2dbpdldw6w4prmsbmx8mh7lplww"; depends=[ade4]; };
   subplex = derive2 { name="subplex"; version="1.5-4"; sha256="10cbgbx1bgsax5z7gz6716g360xpq4mvq19cf4qqrxv02mmwz57z"; depends=[]; };
-  subprocess = derive2 { name="subprocess"; version="0.8.2"; sha256="1qyl8726vq94vqd6iyh9kca6wwxi3g7yv4b784wn2ifrm4waixxd"; depends=[]; };
+  subprocess = derive2 { name="subprocess"; version="0.8.3"; sha256="00720hj685449vhjqm9q6rrsn5jyxnxwq3pgxpbsnrhmwa697w89"; depends=[]; };
   subrank = derive2 { name="subrank"; version="0.9.9.1"; sha256="19lgw7248jq6b34i17c7vw208wsvmppni7njswd02i9xdgyjn95z"; depends=[]; };
   subsamp = derive2 { name="subsamp"; version="0.1.0"; sha256="1bfz2z2qy1war3id8qr1asygwvwxgf2hhlh075hr6bjdkxz0j0nd"; depends=[]; };
   subscore = derive2 { name="subscore"; version="2.0"; sha256="1vscmzw6ama2kc7ic6b2rfbbczcpyhp0m4dd5khg9vkyihww5b5h"; depends=[CTT irtoys]; };
@@ -11775,14 +12289,14 @@ in with self; {
   subtype = derive2 { name="subtype"; version="1.0"; sha256="1094q46j0njkkqv09slliclp3jf8hkg4147hmisggy433xwd19xh"; depends=[penalized ROCR]; };
   sudoku = derive2 { name="sudoku"; version="2.6"; sha256="13j7m06m38s654wn75kbbrin5nqda4faiawlsharxgrljcibcbrk"; depends=[]; };
   sudokuAlt = derive2 { name="sudokuAlt"; version="0.1-11"; sha256="1hv9d99ir1xz6p0arxr77dv5qb45sr8jhapm6wf755l7pxlqqklq"; depends=[magrittr]; };
-  sugrrants = derive2 { name="sugrrants"; version="0.1.2"; sha256="0l9v2wqb8wsp002gc802xcawwyv56rn765ipp6d1mzds3sp438h7"; depends=[dplyr ggplot2 lubridate purrr readr rlang tidyr timeDate tsibble]; };
+  sugrrants = derive2 { name="sugrrants"; version="0.2.0"; sha256="0860jc979f5j0697hksx5bzrrmq7jqi9461w3f1m9xbgd0d01ag2"; depends=[dplyr ggplot2 gtable lubridate rlang]; };
   sumFREGAT = derive2 { name="sumFREGAT"; version="1.0.0"; sha256="13g3px3c3dxacrvgwrvqdp8lm7k185npr0dlq3siq9x9mgjr7hsj"; depends=[Matrix]; };
   summariser = derive2 { name="summariser"; version="0.1.0"; sha256="0a6wyb0r1i0cynld002q96ylr58jz76n5jqjz8gm6a3csjn9qss7"; depends=[dplyr ggplot2 lazyeval plotrix]; };
-  summarytools = derive2 { name="summarytools"; version="0.8.5"; sha256="0455csyz3hd9armpw18r1lgbzbyr6i43wyampp4n0s0lr95flp46"; depends=[htmltools lubridate matrixStats pander pryr rapportools RCurl]; };
-  sunburstR = derive2 { name="sunburstR"; version="2.0.0"; sha256="1gkrgm90ps5i1k5cqdw6sbvd4jgbk4yq82gwd5m1z1jhv1shfsf4"; depends=[d3r dplyr htmltools htmlwidgets]; };
+  summarytools = derive2 { name="summarytools"; version="0.8.8"; sha256="0z836m6ib9bznwcawn6xf8gck05ydxwi3bx4jbrbyqql4kci8zwb"; depends=[htmltools lubridate matrixStats pander pryr rapportools RCurl]; };
+  sunburstR = derive2 { name="sunburstR"; version="2.1.0"; sha256="0dg988fnm9z1p14j2l604q4aqb83vrijvafbpc1l4kn0dg3cs1ff"; depends=[d3r dplyr htmltools htmlwidgets]; };
   suncalc = derive2 { name="suncalc"; version="0.4"; sha256="190bnh26bl26piq6512ijrx2hygzdscryjsjyz8y4ara8bf646r3"; depends=[V8]; };
-  sundialr = derive2 { name="sundialr"; version="0.1.0"; sha256="0r6nijpj6vbz9ssrdhxn01frhahnqg4n1bsfg6d43c1smj563y6m"; depends=[Rcpp]; };
-  supc = derive2 { name="supc"; version="0.1"; sha256="1cq0lr04m409xr3i1hphww4ldr8z3kqq2gmp7hm3yp0iz2gy3m9a"; depends=[BH Rcpp]; };
+  sundialr = derive2 { name="sundialr"; version="0.1.1"; sha256="1f56hqh9ah5chwwr4ak39hc4q49hpzz398spifkv6zyd0sy8kc8s"; depends=[Rcpp]; };
+  supc = derive2 { name="supc"; version="0.2.1"; sha256="121dy7ymvxvq3ksf17hg0df74ycd2nag2z2ggnw4p2rwzj99vgc5"; depends=[BH Rcpp]; };
   supclust = derive2 { name="supclust"; version="1.0-7"; sha256="0437pccagvqv6ikdsgzpif9yyiv6p24lhn5frk6yqby2asj09727"; depends=[class rpart]; };
   supcluster = derive2 { name="supcluster"; version="1.0"; sha256="1rkd4bpzzvzbmqaj907pqv53hxcgic0jklbsf5iayf0ra768b5w6"; depends=[gtools mvtnorm]; };
   superMDS = derive2 { name="superMDS"; version="1.0.2"; sha256="0jxbwm3izk7bc3bd01ygisn6ihnapg9k5lr6nbkr96d3blpikk04"; depends=[]; };
@@ -11792,22 +12306,21 @@ in with self; {
   supernova = derive2 { name="supernova"; version="1.1"; sha256="0n34fkscml6ldbcr6kk8c6n4f5z4j398qn1vsp06h3b0h6sl5rrb"; depends=[]; };
   superpc = derive2 { name="superpc"; version="1.09"; sha256="1p3xlg2n7p57n54g2w4frfrng5vjh97kp6ax4mrgvj3pqmd1m69z"; depends=[survival]; };
   supervisedPRIM = derive2 { name="supervisedPRIM"; version="2.0.0"; sha256="1j5gsy119pvrhkkg048lyk6hjvn9x1bhmfy5g824gj3k1w5slrib"; depends=[prim]; };
-  support = derive2 { name="support"; version="0.1.1"; sha256="0031dqkjwsi7s7bmvidjnivqxlh43q0ak2jnqnzm8h7sp0kfwjwf"; depends=[BH doParallel matrixStats MHadaptive nloptr randtoolbox Rcpp RcppArmadillo]; };
+  support = derive2 { name="support"; version="0.1.2"; sha256="1ih32hhgkbrdmjprqqf1sqlijgibzsrzh37i8jfmfb8n0d6h4x5a"; depends=[BH doParallel matrixStats MHadaptive nloptr randtoolbox Rcpp RcppArmadillo]; };
   support_BWS = derive2 { name="support.BWS"; version="0.2-0"; sha256="1yfjpr9v9zsbkysm3r6zk9r0a072g038lmj9wk4014a3rk9kmm80"; depends=[]; };
   support_BWS2 = derive2 { name="support.BWS2"; version="0.1-2"; sha256="069n7kxl74v42rjxb153yk1p81izkbvi7k6r8zd5d78jx54w7igb"; depends=[]; };
   support_CEs = derive2 { name="support.CEs"; version="0.4-1"; sha256="1rbyl7v6m07dsp08kkk9020bh39rhx89q7d05rc5kxb6f7y66jyz"; depends=[DoE_base MASS RCurl simex XML]; };
   supportInt = derive2 { name="supportInt"; version="1.1"; sha256="14fh75sds05c06xkcfbijd8my3sa9kpnczzh96xx0gwj1193yya9"; depends=[ProfileLikelihood]; };
   sure = derive2 { name="sure"; version="0.2.0"; sha256="0gwr2j321i2vq98rin5b1m4sl123dm1nih1ghcmj0zd1wd6x5x54"; depends=[ggplot2 goftest gridExtra]; };
   surface = derive2 { name="surface"; version="0.4-1"; sha256="0z7fh09hjmxfmqzi588gjwqqlpj1a475aixrnvy911lkx3zfk146"; depends=[ape geiger MASS ouch]; };
-  surrosurv = derive2 { name="surrosurv"; version="1.1.24"; sha256="0c18pjkqgp5nm927jvcbgpfa4knrhnsq0492d1ysfr1li8sf9n7q"; depends=[copula eha lme4 MASS Matrix msm mvmeta optextras optimx parfm SurvCorr survival]; };
+  surrosurvROC = derive2 { name="surrosurvROC"; version="0.1.0"; sha256="1dpqr9dqzckgvdfrb2ndxazra0lbp6db9wbjch4vig3kyz6nyw4y"; depends=[survival]; };
   surv2sampleComp = derive2 { name="surv2sampleComp"; version="1.0-5"; sha256="0pk70q33il9clz0ikzx1cypg5ygnsqp5hgk67xczzbidksjzs4dn"; depends=[flexsurv plotrix survival]; };
   survAUC = derive2 { name="survAUC"; version="1.0-5"; sha256="0bcj982ib1h0sjql09zbvx3h1m96jy9q37krmk6kfzw25ms6bzzr"; depends=[survival]; };
   survAWKMT2 = derive2 { name="survAWKMT2"; version="1.0.0"; sha256="1cv39rf1ia4nwrri9d9izy6lxndnfwqy2vzrb9rrxga2qplxl79k"; depends=[survival]; };
   survAccuracyMeasures = derive2 { name="survAccuracyMeasures"; version="1.2"; sha256="1i41xkvqpxpq9spryh1syp57ymlzw71ygdjqn41rv8jjc9q52x9g"; depends=[Rcpp RcppArmadillo survival]; };
   survBootOutliers = derive2 { name="survBootOutliers"; version="1.0"; sha256="1gfh2n1kd1m4bpd1j7islm5ar1qmzycnmfpb8zl8ghv0z5rf5f09"; depends=[survival]; };
   survC1 = derive2 { name="survC1"; version="1.0-2"; sha256="1bidjhq3k5ab7gqj1b2afngip7pp6c9c7q0m6ww7h7i2vg505l7v"; depends=[survival]; };
-  survClip = derive2 { name="survClip"; version="0.2.3"; sha256="1s82z8cld6qlg6dv0l4j4vyg58ji9qp7xkg6sxd9s88fpcjdnz3g"; depends=[checkmate clipper corpcor elasticnet FactoMineR graph qpgraph rrcov survival]; };
-  survHE = derive2 { name="survHE"; version="1.0.6"; sha256="128pjnm1m12qqhnz2izwmir64m99389qjr73vcqr19dgbkbgv28c"; depends=[BH flexsurv Rcpp RcppEigen rms rstan StanHeaders xlsx]; };
+  survHE = derive2 { name="survHE"; version="1.0.64"; sha256="1vqfvmr2dza8hw61b5q0wl22b7gpca7llpq5swdclnll1narff5i"; depends=[BH flexsurv Rcpp RcppEigen rms rstan StanHeaders xlsx]; };
   survIDINRI = derive2 { name="survIDINRI"; version="1.1-1"; sha256="03lsypx189zm28gv764gdq24a18jj3kpdk91ssa501qxj5jv7v29"; depends=[survC1 survival]; };
   survJamda = derive2 { name="survJamda"; version="1.1.4"; sha256="14ly1g548ysm8jgsyrhj12zmd6i2lca7rsgby3jbwikyqyk1mx5q"; depends=[ecodist survcomp survival survivalROC survJamda_data]; };
   survJamda_data = derive2 { name="survJamda.data"; version="1.0.2"; sha256="0a010v2ar48i5m0jiqjvdyqm93ckfgfmcmym9a02h0rclnizd75r"; depends=[]; };
@@ -11816,9 +12329,9 @@ in with self; {
   survRM2 = derive2 { name="survRM2"; version="1.0-2"; sha256="0pvp65c1kkbkcci4l3cvq4a5krmv58jwb9abz5225ql6jyawzlsw"; depends=[survival]; };
   survRM2adapt = derive2 { name="survRM2adapt"; version="1.0-1"; sha256="1r3jvjbc2sb7b00s95b3sdx4d99rmrnd573fx1n4914ydiggi9nn"; depends=[survival]; };
   survSNP = derive2 { name="survSNP"; version="0.24"; sha256="0mzwcp8zfqvsiapa446si9qb6wyymnw5zj6acj6f2cfjpyi76k4w"; depends=[foreach lattice Rcpp survival xtable]; };
-  surveillance = derive2 { name="surveillance"; version="1.16.1"; sha256="0pr6fy0n684ncl9hf0bp6jfahmihziyyfj2zwnqigkc4bcl091h3"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat xtable]; };
+  surveillance = derive2 { name="surveillance"; version="1.16.2"; sha256="1k6wpzsagsq2ixpdhx6b4zzb5wv2j95nsmxyfwvlxkxafahx986h"; depends=[MASS Matrix nlme polyCub Rcpp sp spatstat xtable]; };
   survexp_fr = derive2 { name="survexp.fr"; version="1.0"; sha256="12rjpnih0xld4dg5gl7gwxdxmrdmyzsymm7j05v98ynldd1jkjl8"; depends=[survival]; };
-  survey = derive2 { name="survey"; version="3.33-2"; sha256="1c4q0005663b0y87ckmf1ra7gm2i5hnlw955pgb11bywh60hg9hl"; depends=[lattice Matrix survival]; };
+  survey = derive2 { name="survey"; version="3.34"; sha256="09024mqkbm5aak9rsi9qw97d3xrq2dba3z2hyvydncygjmjymy65"; depends=[lattice Matrix minqa numDeriv survival]; };
   surveybootstrap = derive2 { name="surveybootstrap"; version="0.0.1"; sha256="13rp6gj1dgdzcjbi2403pldygp1dyqx8zj0r1nvyghpi06x5gpb7"; depends=[dplyr functional plyr Rcpp RcppArmadillo stringr]; };
   surveydata = derive2 { name="surveydata"; version="0.2.0"; sha256="1iwhjhazfy38dbcj224kz3zbw2nvpq01ry54wmmkg9d0n6mb02h4"; depends=[dplyr magrittr plyr purrr stringr]; };
   surveyeditor = derive2 { name="surveyeditor"; version="1.0"; sha256="073219bcn1hlxl9ql6gncfvgn0m37pz5sb7h94nq6lf35dymq5zq"; depends=[]; };
@@ -11826,14 +12339,17 @@ in with self; {
   surveyplanning = derive2 { name="surveyplanning"; version="2.9"; sha256="0ad4122m78hbzhkkaspzpr62bl59w1j8z0qa67slqljjldhq1akv"; depends=[data_table laeken]; };
   survidm = derive2 { name="survidm"; version="1.1.0"; sha256="1piwhb8zsqnw284xp0l3ajs8r9amyn8yfng19hkci574mkdgsw4f"; depends=[doParallel doRNG foreach KernSmooth np survival TPmsm]; };
   survivALL = derive2 { name="survivALL"; version="0.9.3"; sha256="0lnvs7b097sl21gvnfafdprzvh197p1q4nzzagkdf4xm1xw8pj0h"; depends=[cowplot desiR ggplot2 ggthemes survcomp survival viridis]; };
-  survival = derive2 { name="survival"; version="2.42-4"; sha256="0gnv6r6qrapw867gb9napa8f00dm15aw97lgn6556mn9i9k6d0k7"; depends=[Matrix]; };
+  survival = derive2 { name="survival"; version="2.42-6"; sha256="1bsxc2fir9pbvdzy9n474fkl7har606h9zhspp0z67wnjpp48g73"; depends=[Matrix]; };
+  survivalAnalysis = derive2 { name="survivalAnalysis"; version="0.1.0"; sha256="148l6qp9gwzpjh7hky9bayggal9cw629xabl34iklqvqlz1im7gb"; depends=[cowplot dplyr forcats ggplot2 gridExtra magrittr purrr rlang scales stringr survival survminer tibble tidyr tidytidbits]; };
   survivalMPL = derive2 { name="survivalMPL"; version="0.2"; sha256="05bfa9fx841kh9g2jcs1dimsxkjnf4bxgamcnjpisx3a644c1gkn"; depends=[MASS survival]; };
   survivalROC = derive2 { name="survivalROC"; version="1.0.3"; sha256="0wnd65ff5w679hxa1zrpfrx9qg47q21pjxppsga6m3h4iq1yfj8l"; depends=[]; };
   survivalsvm = derive2 { name="survivalsvm"; version="0.0.5"; sha256="1b4hrdrqq1z0kfn8vpdwg54388m25df2s6w9i574x3mkxkmkjkga"; depends=[Hmisc kernlab Matrix pracma quadprog survival]; };
-  survminer = derive2 { name="survminer"; version="0.4.2"; sha256="15npx3q7xf7sl7pbb1476khgfpqrvidqcb101iim3iym125sl54r"; depends=[broom cmprsk dplyr ggplot2 ggpubr gridExtra magrittr maxstat purrr scales survival survMisc tibble tidyr]; };
+  survminer = derive2 { name="survminer"; version="0.4.3"; sha256="0bsjvs7q2ydxvvjka28zsgcpwabqqpvwvb8m5fhhx4rgwlwimfbf"; depends=[broom cmprsk dplyr ggplot2 ggpubr gridExtra magrittr maxstat purrr scales survival survMisc tibble tidyr]; };
   survsim = derive2 { name="survsim"; version="1.1.5"; sha256="0194w1h3v4p546wibp3xyhy2r84w3p9r6ggzhlf11v8467mjy0l9"; depends=[eha statmod]; };
+  survsup = derive2 { name="survsup"; version="0.0.1"; sha256="16j7ip9qr7q3drb8jzb7ha1ni1m8mr56686blnvlcwih5yqmfkb5"; depends=[broom colorspace dplyr ggplot2 gridExtra survival]; };
   survtmle = derive2 { name="survtmle"; version="1.1.0"; sha256="0q1ym4a13xqy3lqjwg40wp28xlp1iqybwq7dd0gp6fnmx3n6373g"; depends=[dplyr ggplot2 ggsci Matrix plyr speedglm stringr SuperLearner tidyr]; };
-  survutils = derive2 { name="survutils"; version="1.0.1"; sha256="09844i5nfyn0fm5i8ca96xz8dza21shh2f89w41zh17xaxvidjsw"; depends=[broom dplyr ggplot2 glue lazyeval magrittr purrr survC1 survival]; };
+  survutils = derive2 { name="survutils"; version="1.0.2"; sha256="1ws4r5chz0cbf6vjmlj2xv9hmr968xyw8dc5g3j937xpbz40i75h"; depends=[broom dplyr ggplot2 glue lazyeval magrittr purrr survC1 survival]; };
+  survxai = derive2 { name="survxai"; version="0.2.0"; sha256="09sk7i0bsk5ql8dibqyykyv95i945bf43xpr4gv22w73zwc0n8hh"; depends=[breakDown ggplot2 pec prodlim scales survival survminer]; };
   sutteForecastR = derive2 { name="sutteForecastR"; version="0.1"; sha256="13dd0v3l3s7xb1wnpf6qvnvclzab87831z8bsxsq53vpb26xcw1b"; depends=[forecast forecastHybrid fracdiff robets]; };
   svDialogs = derive2 { name="svDialogs"; version="1.0.0"; sha256="0xqppydfawnwk84kb5qiybwbcmv38vn4imgz01mz2pnq4xb80p97"; depends=[rstudioapi svGUI]; };
   svDialogstcltk = derive2 { name="svDialogstcltk"; version="0.9-4"; sha256="16166f8i6nsg7palqmnlp5b9s91d6ja9n0zm6rcvd2fwnw2ljkr4"; depends=[svDialogs svGUI]; };
@@ -11848,10 +12364,9 @@ in with self; {
   svUnit = derive2 { name="svUnit"; version="0.7-12"; sha256="16iiryj3v34zbnk1x05g30paza7al1frqx52fkw8ka61icizsrf5"; depends=[]; };
   svWidgets = derive2 { name="svWidgets"; version="0.9-45"; sha256="08cpsy4abypjnv33arsgxk5i0gpdvdzj60wa1b22ca1n7d35mc80"; depends=[svMisc]; };
   svapls = derive2 { name="svapls"; version="1.4"; sha256="12gk8wrgp556phdv89jqza22zmsnachsydr5vlz38s664d2lplbg"; depends=[class pls]; };
-  svars = derive2 { name="svars"; version="1.2.0"; sha256="06kg9z5clsgg65gjrcb456ppdwk8cja2cmzfwlwmnz5yf3m6lk8k"; depends=[clue copula DEoptim expm ggplot2 pbapply reshape2 steadyICA tsDyn vars zoo]; };
+  svars = derive2 { name="svars"; version="1.2.1"; sha256="1kdnrwwrb903a53qr8ppwyw7p0nhgxwgpj2yyd0w248nwswfwhfz"; depends=[clue copula DEoptim expm ggplot2 pbapply reshape2 steadyICA strucchange tsDyn vars zoo]; };
   svcm = derive2 { name="svcm"; version="0.1.2"; sha256="1lkik65md8xdxzkmi990dvmbkc6zwkyxv8maypv2vbi2x534jkhl"; depends=[Matrix]; };
   svd = derive2 { name="svd"; version="0.4.1"; sha256="00plnwrjnp3majssr3qbz2zp25z9cfivgpggyfvy4lnc4av5qn3g"; depends=[]; };
-  svdvis = derive2 { name="svdvis"; version="0.1"; sha256="1z3z86izl2gpxllpx56vn6kkdg9cjjikfd90hdjnfi4bmmpx50dn"; depends=[GGally ggplot2 gridExtra RColorBrewer reshape2 scales]; };
   svdvisual = derive2 { name="svdvisual"; version="1.1"; sha256="02mzh2cy4jzb62fd4m1iyq499fzwar99p12pyanbdnmqlx206mc2"; depends=[lattice]; };
   svenssonm = derive2 { name="svenssonm"; version="0.1.0"; sha256="0pvay9vfrcafaq270pq6glp2b74zdfgldksl13cwdb0wk7qx7731"; depends=[]; };
   svgPanZoom = derive2 { name="svgPanZoom"; version="0.3.3"; sha256="09gfa2943bvmjpnhnc2nr85wddkv662k30pxsqvvvq1va64rzpkc"; depends=[htmlwidgets]; };
@@ -11869,47 +12384,51 @@ in with self; {
   swamp = derive2 { name="swamp"; version="1.4.1"; sha256="01w44d7rqh6q9wpapd3g7rzllhbm2brwilmna9vk2dwqx57jyim6"; depends=[amap gplots impute MASS]; };
   swapClass = derive2 { name="swapClass"; version="1.0.1"; sha256="0wg6km261xdywakxi64dw4wwprbrkw217q4c6622z0mgm9sjgpym"; depends=[inline]; };
   swatches = derive2 { name="swatches"; version="0.5.0"; sha256="1kivscgka8gn44rjj0s5sjan1s04znnyn0nd37a74zaik0hm8zs0"; depends=[colorspace httr pack stringr xml2]; };
-  sweep = derive2 { name="sweep"; version="0.2.1"; sha256="0v6166p1h14klf1avqvry8jj3as498qnydksy0da8q1bp1sy007f"; depends=[broom devtools dplyr forecast lazyeval lubridate tibble tidyr timetk]; };
+  swdft = derive2 { name="swdft"; version="0.0.1"; sha256="0971iyyw537n24wsm7wh126zgb7b3p9161sc2ny293qzbsb7hm1g"; depends=[]; };
+  sweep = derive2 { name="sweep"; version="0.2.1.1"; sha256="0hfvgvzr5mh9niwpsr9jcly426dz457afrg4q5w13ahsasx7c9jg"; depends=[broom devtools dplyr forecast lazyeval lubridate tibble tidyr timetk]; };
   sweidnumbr = derive2 { name="sweidnumbr"; version="1.4.1"; sha256="014zbp6a66gv7b0f2gmzvifllz266zrc14ihawksvyp1mcxz2ipg"; depends=[lubridate stringr]; };
   swfscMisc = derive2 { name="swfscMisc"; version="1.2"; sha256="08p2crsx8zi6qprs14mhdyq9x5sjlp3a46c1zzvp6741an4fy640"; depends=[ggplot2 mapdata maps reshape2 spatstat]; };
-  swgee = derive2 { name="swgee"; version="1.2"; sha256="1blfxhvcpfbc0k25xlkw8bxqdmgz3c9ksd9ww2p8k0dy5jd2z64r"; depends=[gee geepack mvtnorm]; };
+  swgee = derive2 { name="swgee"; version="1.3"; sha256="0shacrrj72c2yhnbrrryy98yvxb16882zawvfhy1hpf39gspld7n"; depends=[gee geepack mvtnorm]; };
   swirl = derive2 { name="swirl"; version="2.4.3"; sha256="1l7gwisk3sjslh6zh4cq3vxf5y84af2fr078cp4i86rw1w2j9d44"; depends=[digest httr RCurl stringr testthat yaml]; };
   swirlify = derive2 { name="swirlify"; version="0.5.2"; sha256="07r6rdj079ryafdgs0p8jhnk4h7iqm7agh9wjhvm12abbwjr9g1x"; depends=[base64enc readr rmarkdown shiny shinyAce stringr swirl whisker yaml]; };
   swissMrP = derive2 { name="swissMrP"; version="0.62"; sha256="1vy6h6c4v49zlsli77ilj4df8cfh67rqmki71v6j1aqw6kf3b649"; depends=[arm blme lme4 maptools sp]; };
   switchnpreg = derive2 { name="switchnpreg"; version="0.8-0"; sha256="1vaanz01vd62ds2g2xv4kjlnvp13h59n8yqikwx07293ixd4qhpw"; depends=[expm fda HiddenMarkov MASS]; };
-  switchr = derive2 { name="switchr"; version="0.12.7"; sha256="1ymvghjvbrbsgn49mp8f9n4kv81626pa4pv05hrx813ly8h30mmq"; depends=[RCurl RJSONIO]; };
+  switchr = derive2 { name="switchr"; version="0.13.0"; sha256="1ij97gz31gxbmd0fwsw950vhgyd1py3xr4vlh7q98ba1ldzw8dg1"; depends=[RCurl RJSONIO]; };
   swmmr = derive2 { name="swmmr"; version="0.8.1"; sha256="0zl00864x9q6a2aqdbqs3b5kw6z50wgr46c62kxk9xkns8317sa7"; depends=[dplyr purrr Rcpp readr tibble tidyr xts zoo]; };
-  sybil = derive2 { name="sybil"; version="2.1.1"; sha256="1hgxlwpb5libvv126vh01ngxqs8hlvll8xjgxw5xxhfbgsadfp1m"; depends=[lattice Matrix]; };
+  sybil = derive2 { name="sybil"; version="2.1.2"; sha256="1nfhh696hrajmxg3z36rjgp7bmgsxiz7hpyz00y0w1qkjczbbph3"; depends=[lattice Matrix]; };
   sybilDynFBA = derive2 { name="sybilDynFBA"; version="1.0.1"; sha256="1zyhvlzkcwnq3sh6gvi0v1crq94mr16bc5jnh0g9c8rbdl4v8r4x"; depends=[sybil]; };
   sybilccFBA = derive2 { name="sybilccFBA"; version="2.0.0"; sha256="0x0is1a56jyahaba6dk9inj5v248m8n46f70ynqyqp1xpiax1fkr"; depends=[Matrix sybil]; };
   sybilcycleFreeFlux = derive2 { name="sybilcycleFreeFlux"; version="2.0.0"; sha256="0p3w7ipyrqrh7nf52h8qmr4fikyinm8an7npmcb7kwjd59rcy554"; depends=[MASS Matrix sybil]; };
   sylcount = derive2 { name="sylcount"; version="0.1-0"; sha256="1dxbqbjyvkg7cx234icby9fjdjz1z4l4crqd7kv8m05fv69pg224"; depends=[]; };
-  sylly = derive2 { name="sylly"; version="0.1-4"; sha256="14lw5sxrdvidk0465a7x0jz74cvqjbqv0wlqdy78qzbq4ilcmcaa"; depends=[]; };
+  syllabifyr = derive2 { name="syllabifyr"; version="0.1.0"; sha256="1pd5zjgcmpxg7xqhcljxck80pjs84ihhkr5bl4i8h2mc6xqmy1kf"; depends=[dplyr purrr stringr tibble tidyr]; };
+  sylly = derive2 { name="sylly"; version="0.1-5"; sha256="01c7mpsk32kcsjyzzv52bn8bj28lqbmyhhfa1cwhphva5c5nkqwx"; depends=[]; };
   sylly_en = derive2 { name="sylly.en"; version="0.1-3"; sha256="0jw48qin172vv7skcpvcpi9wzgav5l9afzb09hhgcxvivbz6dl93"; depends=[sylly]; };
-  symDMatrix = derive2 { name="symDMatrix"; version="1.0.0"; sha256="0xss7f7hkrf2afchccfavymylfybnp9nxawqxd2vdjni95kbd595"; depends=[]; };
+  sym_arma = derive2 { name="sym.arma"; version="1.0"; sha256="13fhmgzd50mwlnz9m6nnn4arr4jdqf5h7dgli5lk08da9wx6cy69"; depends=[]; };
+  symDMatrix = derive2 { name="symDMatrix"; version="2.0.2"; sha256="1lf0yhid47107c2vnr4g7xz4hrjb2cgr5zpgik4xf5gypli6xh6x"; depends=[bit ff LinkedMatrix]; };
   symbolicDA = derive2 { name="symbolicDA"; version="0.5-3"; sha256="1zbr8b19m3fnzx0bdajl86s6aijiycjdibf9q83wd6mgpq66jb85"; depends=[ade4 cluster clusterSim e1071 rgl shapes XML]; };
   symbols = derive2 { name="symbols"; version="1.1"; sha256="1234rx3divhg60p0h0zn11viqn51fm6b8876m6rip2i6z8vrg319"; depends=[shape]; };
   symmoments = derive2 { name="symmoments"; version="1.2"; sha256="074k0285c0yri39zags420kjls6kjlvlhymg3r7y24h42zdy82d4"; depends=[combinat cubature multipol mvtnorm]; };
   synRNASeqNet = derive2 { name="synRNASeqNet"; version="1.0"; sha256="05ncwbv8kvvhqqrxa8qq7s0jc6krs5a56ph04z50iwgd91rzyi7x"; depends=[GenKern igraph KernSmooth parmigene]; };
   synbreed = derive2 { name="synbreed"; version="0.12-9"; sha256="0h85z9bhzgsr783qx3zjqyi461a0q52wbqifwm3gc1kapl5irxhd"; depends=[abind BGLR doBy doParallel foreach igraph lattice LDheatmap MASS qtl regress]; };
   synbreedData = derive2 { name="synbreedData"; version="1.5"; sha256="16wv9r7p0n8726qv0jlizmkvnrqwjj1q4xaxvfmj9611rm47vckx"; depends=[]; };
-  synchronicity = derive2 { name="synchronicity"; version="1.3.4"; sha256="1km5hx82gy71m5nc6pkcksv0dn32fylhg2axpdsnarrxva14mgdg"; depends=[BH bigmemory_sri Rcpp uuid]; };
+  synchronicity = derive2 { name="synchronicity"; version="1.3.5"; sha256="1kgsk64aifjm3mfj102y3va7x1abypq2zi0cqbnjhl8fqyzp69hx"; depends=[BH bigmemory_sri Rcpp uuid]; };
   synchrony = derive2 { name="synchrony"; version="0.3.7"; sha256="0lnin4aphy1lq20bn7nsdj0ymy2xdwjzdj2f89xq0qwkc7w7b5jb"; depends=[]; };
   synlik = derive2 { name="synlik"; version="0.1.2"; sha256="1pscfqg5x7wpq3vp1i7fy29dwa7cw5g3kzxinanwrwbcznv9nyms"; depends=[Matrix Rcpp RcppArmadillo]; };
-  synthACS = derive2 { name="synthACS"; version="1.4.2"; sha256="069cqmp9whal7z490jh6my8fqmmc4d2mm693xi4lsci2afc5plzc"; depends=[acs data_table Rcpp]; };
-  synthpop = derive2 { name="synthpop"; version="1.4-4"; sha256="1q3vmsagdaha97182cf3ak51rjx018h8c72zv9v6slf7h71a0d53"; depends=[classInt foreign ggplot2 lattice MASS nnet party plyr polspline proto randomForest rpart]; };
-  sys = derive2 { name="sys"; version="1.5"; sha256="0yskm5mzps4435yvld9nfp6i5lqdy5ckpdwydvvbyjznz5yv01x2"; depends=[]; };
-  sysfonts = derive2 { name="sysfonts"; version="0.7.2"; sha256="1jl66pyw9khi117523zanjjzdpnpgqdqx190w829xc4ljxzi8n55"; depends=[]; };
+  synoptReg = derive2 { name="synoptReg"; version="0.1.0"; sha256="1d1341b2al6qjhdx2s2ww9lfr3pz7hxc9gv41vgvh4bw8pxcd48d"; depends=[fields maps ncdf4 raster zoo]; };
+  synthpop = derive2 { name="synthpop"; version="1.5-0"; sha256="0p0dszrh66xzfaiks89qli23c8qzq8gvi4d7wwlngkmq4k8y80rq"; depends=[classInt foreign ggplot2 lattice MASS mipfp nnet party plyr polspline proto randomForest rpart]; };
+  sys = derive2 { name="sys"; version="1.6"; sha256="16jkdfik3n7h1cjas7qgxkv9z1fv8mcsm0mx6jsfyj180bp2a49v"; depends=[]; };
+  sysfonts = derive2 { name="sysfonts"; version="0.8"; sha256="0wng902plryf2d8fc7k7m3jx11acz51kb2d91cqbyhq7xpk06z43"; depends=[]; };
   sysid = derive2 { name="sysid"; version="1.0.4"; sha256="0fr9gf5yjin3zvz850z4r4pqc1r4mwx8d46sl64i4csdm9qnqagy"; depends=[bitops ggplot2 polynom reshape2 signal tframe zoo]; };
   systemfit = derive2 { name="systemfit"; version="1.1-22"; sha256="19nmhidnzyk2wcwi5v28n9lkvylfw4in63vg5naqlk3w4fbwm2wb"; depends=[car lmtest MASS Matrix sandwich]; };
   systemicrisk = derive2 { name="systemicrisk"; version="0.4.1"; sha256="1zimkyj58lk3iq5x4g6a76dain65j36s8c8jhx25sqjr5z2zmfsr"; depends=[lpSolve Rcpp]; };
+  syt = derive2 { name="syt"; version="0.1.0"; sha256="1qagd67wznyc6sfvs22lw2lwnwap1hlpf92i0ck5aif514ysi886"; depends=[Matrix partitions]; };
   syuzhet = derive2 { name="syuzhet"; version="1.0.4"; sha256="0wf4rls7v7h7zkq2k550d16aqvaij27iim85cwif7dkbinajfngi"; depends=[dplyr dtt NLP textshape tidyr zoo]; };
   tRophicPosition = derive2 { name="tRophicPosition"; version="0.7.5"; sha256="0qmkdsl0b2aw485vpbdqxdlfwg5a3i5bj4l67xv6h51fnbyfqfiz"; depends=[ArgumentCheck coda data_table ggplot2 gridExtra hdrcde MCMCglmm plyr rjags]; };
-  taRifx = derive2 { name="taRifx"; version="1.0.6"; sha256="10kp06hkdx1qrzh2zs9mkrgcnn6d31cldjczmk5h9n98r34hmirx"; depends=[plyr reshape2]; };
+  taRifx = derive2 { name="taRifx"; version="1.0.6.1"; sha256="1qnp2562irhb516jfapmpg4260172ckc8jc3vxfkjsj7dnr35j6l"; depends=[plyr reshape2]; };
   tab = derive2 { name="tab"; version="3.1.2"; sha256="1vc5swfy9p3bsv5bqqgk4w81apzk6d0m1xz0cbhii7rpn7x6zh1h"; depends=[gee survey survival xtable]; };
   taber = derive2 { name="taber"; version="0.1.0"; sha256="07a18kn65b4cxxf1z568n7adp6y3qx96nrff3a3714x241sd5p6i"; depends=[dplyr magrittr]; };
   tablaxlsx = derive2 { name="tablaxlsx"; version="1.2.2"; sha256="1q7ap1dmymf3aj5g860794jfn9zrn3qiwwcdzl95lsbpkhgyspmz"; depends=[openxlsx]; };
-  table1 = derive2 { name="table1"; version="1.0"; sha256="06cidli3k8cxzvnj1n6vysamkd3qsim2i6ly9fl7rwiyj4g64rw8"; depends=[Formula]; };
+  table1 = derive2 { name="table1"; version="1.1"; sha256="01r6zlhv3d0ggniv6aaszmzqbappy9zycayiwwlknbwrgiwkp58z"; depends=[Formula htmltools knitr]; };
   table1xls = derive2 { name="table1xls"; version="0.4.0"; sha256="0ixbshbp9hkcg12hj32vgb5bp0pj4rbc3i6g1xdg2zhqp7zanics"; depends=[XLConnect]; };
   tableHTML = derive2 { name="tableHTML"; version="1.1.0"; sha256="0j2dk11h0dvibppyxjix4pxr6i9ji9ipzaizsr1fadrpk5xzawd5"; depends=[htmltools magrittr shiny]; };
   tableMatrix = derive2 { name="tableMatrix"; version="0.82.0"; sha256="1sskijhbqakamrk2rv7v5zpjsdi8jw0jl2z96l0vhsvsiq0cz1c8"; depends=[data_table]; };
@@ -11929,84 +12448,93 @@ in with self; {
   tailDepFun = derive2 { name="tailDepFun"; version="1.0.0"; sha256="1z2jrzly1adiwi8y0pndyfggpr0li6sjv9rkrc5mi47s0qjvr5qj"; depends=[copula cubature mvtnorm SpatialExtremes]; };
   tailloss = derive2 { name="tailloss"; version="1.0"; sha256="0lmjgjs6d94b70i10vx66fyvlxm5swwqbcjsnqa3lmldzz6m4jc1"; depends=[MASS]; };
   tailr = derive2 { name="tailr"; version="0.1.2"; sha256="1z47akvm2y05ih8q5ci03jm29xzp4m52shvbm4d9h2bipnq5crys"; depends=[glue rlang]; };
+  taipan = derive2 { name="taipan"; version="0.1.2"; sha256="192sy5pgq74vs31p7jfn6svdzf9mk9ybppzhp1rlki1bagmm5f1r"; depends=[shiny]; };
+  takos = derive2 { name="takos"; version="0.1.0"; sha256="0a26jmxccpyk36sah9nz7pqpkc1rd9kbwrvwh0r0zp7lwvxbjb8w"; depends=[baseline broom colorRamps data_table devEMF MASS minpack_lm pracma segmented sfsmisc smoother]; };
   tangram = derive2 { name="tangram"; version="0.4"; sha256="1yj5vwc8jkiic4zjag9k7w3j6dibqw5zsi78q6gssshsi9z0zbgy"; depends=[base64enc digest htmltools magrittr R6 stringi stringr]; };
+  tatest = derive2 { name="tatest"; version="1.0"; sha256="1yd9pdpdhxwpllnj5wxa7ly29qiw8qywx9lx0w3nizczlx35fgjy"; depends=[]; };
   tatoo = derive2 { name="tatoo"; version="1.1.0"; sha256="1dsycdp3vln1m1w3nhhrr60x8raw6gbihjpav0d4ad8qla2fq8nh"; depends=[assertthat colt crayon data_table magrittr openxlsx purrr rlang stringi withr]; };
   tau = derive2 { name="tau"; version="0.0-20"; sha256="1inpqc2cz1vvjkmp8h3jpjvnvj0y5cwbbj92jlq0322w5w45vip9"; depends=[]; };
-  tauturri = derive2 { name="tauturri"; version="0.1.1"; sha256="0v0p1avrx9vgnrli4zp6figm3s9265k9yny0acblbjlmz3z8smai"; depends=[httr magrittr plyr purrr tibble]; };
+  tauturri = derive2 { name="tauturri"; version="0.3.0"; sha256="014301f5mzy6vblqzb61bxjv46kdynmmrxjpxyvk01w1k8wkwfcn"; depends=[httr magrittr plyr purrr tibble]; };
   tawny = derive2 { name="tawny"; version="2.1.7"; sha256="1b2v0cgkmhzxy36dcdn6hnbqk6l5ac5c3myvwryf7wlp19xi786d"; depends=[futile_logger futile_matrix lambda_r lambda_tools PerformanceAnalytics quantmod tawny_types xts zoo]; };
   tawny_types = derive2 { name="tawny.types"; version="1.1.5"; sha256="1vg0hv91dif6cfqfzrf7m1qbk57fp8v97fp88whwmvs83yd521hq"; depends=[futile_logger futile_options lambda_r lambda_tools quantmod xts zoo]; };
-  taxa = derive2 { name="taxa"; version="0.2.1"; sha256="0jh3isjlh6bx9mdhavg1c43aayq1zl5jqx3x4690lwgvphnzl1dn"; depends=[crayon dplyr jsonlite knitr lazyeval magrittr R6 rlang stringr taxize tibble tidyr]; };
-  taxize = derive2 { name="taxize"; version="0.9.3"; sha256="05llhgv6a440va80fs45r8q6865q45gi4z28b1ldcln0dmx77r7c"; depends=[ape bold crul data_table foreach httr jsonlite natserv plyr reshape2 ritis rotl rredlist stringr tibble wikitaxa worrms xml2 zoo]; };
+  taxa = derive2 { name="taxa"; version="0.3.1"; sha256="19bfgcibryvvqsqyjw3jgiw4raraas82w1dhkmnv9j7jny3v2677"; depends=[crayon dplyr jsonlite knitr lazyeval magrittr R6 rlang stringr taxize tibble tidyr]; };
+  taxize = derive2 { name="taxize"; version="0.9.4"; sha256="1p5rlc93q62rk2z3qcq02xfrs4pz699qdakk05pz6g9rlbqj342m"; depends=[ape bold crul data_table foreach httr jsonlite natserv plyr reshape2 ritis rotl rredlist stringr tibble wikitaxa worrms xml2 zoo]; };
   taxizedb = derive2 { name="taxizedb"; version="0.1.4"; sha256="15gj9i18ysd83v9fidrrvw938dah04i10ahi3wh5dgjs5fd5ch2s"; depends=[curl DBI dbplyr dplyr hoardr magrittr RMySQL RPostgreSQL RSQLite]; };
   taxlist = derive2 { name="taxlist"; version="0.1.5"; sha256="17b7sdjjzragi8k08304idic0p8cj095h4p9vlpfidn8k6csrkv8"; depends=[foreign stringdist taxize vegdata]; };
-  taxonomizr = derive2 { name="taxonomizr"; version="0.2.2"; sha256="0drzsbr23kr3da6bawjrz8rl976mai0vcz19fr5aypsliqz32b41"; depends=[data_table R_utils RSQLite]; };
+  taxonomizr = derive2 { name="taxonomizr"; version="0.5.1"; sha256="0a8knjyjs9w9nk9xmbny2hh5yfgmwmrj0d9wa58i28x6a7x54aq9"; depends=[data_table R_utils RSQLite]; };
+  taxotools = derive2 { name="taxotools"; version="0.0.4"; sha256="0jvzyr476s21q1n9vylrpsahwqlyx1qalpaprf8kncv8407c1lwl"; depends=[taxize wikitaxa]; };
   tbart = derive2 { name="tbart"; version="1.0"; sha256="0m8l9ic7na70il6r9ha0pyrjwznbgjq7gk5xwa5k9px4ysws29k5"; depends=[Rcpp sp]; };
   tbdiag = derive2 { name="tbdiag"; version="0.1"; sha256="1wr2whgdk84426hb2pf8iiyradh9c61gyazvcrnbkgx2injkz65q"; depends=[]; };
   tbl2xts = derive2 { name="tbl2xts"; version="0.1.2"; sha256="1zz310253s6gz0hzzldil5r03mm7ngvvnba7hxm8fm9dhfmvkbj6"; depends=[dplyr lazyeval PerformanceAnalytics xts zoo]; };
-  tcR = derive2 { name="tcR"; version="2.2.1.11"; sha256="1wyxjwyba08m80g2c40sdg3d5brs3qmq8azb6vzwh2wmgqlb5400"; depends=[data_table dplyr ggplot2 gridExtra gtable igraph Rcpp reshape2 scales stringdist]; };
+  tbrf = derive2 { name="tbrf"; version="0.1.0"; sha256="011p14jbgswbkb1habk09117a8aywzg8zzdaz0qmyr9icab7dpf1"; depends=[boot dplyr lubridate purrr rlang tibble tidyr]; };
+  tcR = derive2 { name="tcR"; version="2.2.2"; sha256="0r44l47pyvj8zc0qa74y048yzjvwf7qrcf635cq656spmf1yszl0"; depends=[data_table dplyr ggplot2 gridExtra gtable igraph Rcpp reshape2 scales stringdist]; };
   tcgsaseq = derive2 { name="tcgsaseq"; version="1.6.6"; sha256="0sk8fydhfx1c3mrir3qx8bqcif220l6ggzmlw9yw8faha210ak2y"; depends=[CompQuadForm ggplot2 GSA KernSmooth]; };
   tcltk2 = derive2 { name="tcltk2"; version="1.2-11"; sha256="1ibxld379600xx7kiqq3fck083s8psry12859980218rnzikl65d"; depends=[]; };
   tclust = derive2 { name="tclust"; version="1.4-1"; sha256="17md6l9v9dl9b72l84df01b52h2xiynbcjm437mv9mzcr09fc2sb"; depends=[]; };
   tcpl = derive2 { name="tcpl"; version="1.4.3"; sha256="0b588in2xmdvybzfbbr0ik9mf0ls6k31nbrdpl7ijvxg2xfxfr1w"; depends=[data_table DBI numDeriv RColorBrewer RMySQL RSQLite]; };
   tdROC = derive2 { name="tdROC"; version="1.0"; sha256="137j1m9pysjcz1gsfcym0438by3c7na21ccjlqf7xfccr1y8k2k6"; depends=[survival]; };
   tdr = derive2 { name="tdr"; version="0.13"; sha256="0i0hnb3fc4d1mbbxcpzmyfh1w2rahfjabg5iyxym3yjd6377al15"; depends=[ggplot2 lattice RColorBrewer]; };
+  tdsc = derive2 { name="tdsc"; version="1.0.0.1"; sha256="17nr5fa4f16ww8si8qikbqmixl38jxjy185b80ff2i5v4129mnwd"; depends=[data_table]; };
   tdthap = derive2 { name="tdthap"; version="1.1-9"; sha256="0y01x0hcf0rw06cpn4pk17b0shf4v2c9was7vfs0zhsbq8qcwx7r"; depends=[]; };
   tea = derive2 { name="tea"; version="1.0"; sha256="03wxhbgx17hl9bbzbfjmfa30q4fqszhs5y9imbp768fmzwbppn24"; depends=[eva]; };
   teachingApps = derive2 { name="teachingApps"; version="1.0.4"; sha256="0wi25wdpkz7kh8r1s42wa9kiky8ilmcg8kgw0j1caygwg0bml2fa"; depends=[actuar BH d3heatmap data_table devtools diagram DiagrammeR dplyr DT dygraphs ggplot2 knitr leaflet magrittr markdown metricsgraphics miniUI networkD3 pacman plotly radarchart Rcpp RcppEigen RcppNumerical rprojroot scales shiny shinyAce shinydashboard shinythemes threejs tidyr visNetwork yaml]; };
   teamcolors = derive2 { name="teamcolors"; version="0.0.1"; sha256="07mqsbhrsy23qc4j1w1wji36cbh6dijkp6p7g3598nlzhw7ln3aj"; depends=[]; };
   teda = derive2 { name="teda"; version="0.1.1"; sha256="0yx469jbkw9cgx73zi5mkykrdn16kn01zh524x9411314aa32avx"; depends=[]; };
   teigen = derive2 { name="teigen"; version="2.2.2"; sha256="1k5k3lj6av5pyx130w1j7avd0jdmm12ryc71mi5mq49sp95ndl4v"; depends=[]; };
+  telefit = derive2 { name="telefit"; version="1.0.0"; sha256="1g54alrkigbrcf9p7np4cbzdzn3hjch70wvv5d0qxrj1xbbz0rgg"; depends=[abind coda cowplot doRNG dplyr fields foreach ggplot2 gtable itertools mvtnorm raster Rcpp RcppArmadillo RcppEigen reshape2 scales scoringRules SDMTools sp stringr]; };
   telegram = derive2 { name="telegram"; version="0.6.0"; sha256="02wwa115f0vz2d9y4nf01397hjkpc3cv2gdl47snrajrm41gji7y"; depends=[curl httr jsonlite R6]; };
   telegram_bot = derive2 { name="telegram.bot"; version="1.0.0"; sha256="10i126wa5dbpzxvr8f9zysfwg53051sk9cjdpdrjva1p3yvyn143"; depends=[httr R6 telegram]; };
   tempR = derive2 { name="tempR"; version="0.9.9.15"; sha256="00xxrwzbqcsvb50xcrr4aii4fjcfa8bc25jn0zvg4dxmww8w4s1r"; depends=[]; };
   tempcyclesdata = derive2 { name="tempcyclesdata"; version="1.0.1"; sha256="0hciachv59kjpjs119r4z24jskzgnassi1yjg3cgl2r0hyglxxc3"; depends=[]; };
   tempdisagg = derive2 { name="tempdisagg"; version="0.25.0"; sha256="0zi11jqb3i5kd2z1bbkz8y7g16kmkcn3xpkwj2brv0s86wxwsny7"; depends=[]; };
-  temperatureresponse = derive2 { name="temperatureresponse"; version="0.1"; sha256="0q2x09cyy4zacbgmnwd43h1rwv2g3f2rk9cbg2phsvgxqx9vfm24"; depends=[AICcmodavg broom dplyr minpack_lm nlme numDeriv rootSolve tidyr]; };
   templates = derive2 { name="templates"; version="0.3.0"; sha256="0xnzj3cvhw1r7zfqaijbfdyclka61jwixcdh05a5z9qwgv0076sh"; depends=[dat magrittr stringr]; };
   tensor = derive2 { name="tensor"; version="1.5"; sha256="19mfsgr6vz4lgwidm80i4yw0y1dr3n8i6qz7g4n2xa0k74zc5pp1"; depends=[]; };
-  tensorA = derive2 { name="tensorA"; version="0.36"; sha256="1xpczn94a6vfkfibfvr71a7wccksg16pc22h0inpafna4qpygcwp"; depends=[]; };
+  tensorA = derive2 { name="tensorA"; version="0.36.1"; sha256="176hjy3bvg3in62r97wxbhq187sjz6c1gwy9x6spaxl6k4my3zy7"; depends=[]; };
+  tensorBF = derive2 { name="tensorBF"; version="1.0.2"; sha256="1dw1a6xqcsl4isbzbfiplgqq5nak5n9ffzm23mzzmkh1r1a8kl1y"; depends=[tensor]; };
   tensorBSS = derive2 { name="tensorBSS"; version="0.3.4"; sha256="0wh14qy7fa7klb7yy272d16cvgfgnrf25wba3bqbpral9pv5nkmv"; depends=[ICtest JADE Rcpp RcppArmadillo tensor tsBSS]; };
-  tensorflow = derive2 { name="tensorflow"; version="1.8"; sha256="1ixli2m7lbkp5pv7a8waxvhi04l41dcrrplzgdyzqi3ifaarr2sk"; depends=[config jsonlite processx reticulate rstudioapi tfruns yaml]; };
+  tensorflow = derive2 { name="tensorflow"; version="1.9"; sha256="0g346xzjkq7bsbdchcp6k5lzx7242vamf1zj0clgmpidqz4afhf3"; depends=[config jsonlite processx reticulate rstudioapi tfruns yaml]; };
   tensorr = derive2 { name="tensorr"; version="0.1.0"; sha256="00zqklz3hqjv20giwqnd1d62x5hdm620hfdkn1x75i87dv92qn8m"; depends=[assertive_base assertive_properties assertive_types Matrix purrr]; };
-  tensr = derive2 { name="tensr"; version="1.0.0"; sha256="05gclhljflkz98hgiq5bgbqjz8icxbdq6b84bn2995cx7v0x85ds"; depends=[]; };
-  tergm = derive2 { name="tergm"; version="3.4.1"; sha256="10sanqbnqdyqafjjcwm99zfnpgrv18z4y2rgaq5wqq7nni184hfm"; depends=[coda ergm MASS network networkDynamic nlme robustbase statnet_common]; };
-  tesseract = derive2 { name="tesseract"; version="2.1"; sha256="11v4z79sdrms5in5qvg5c6bvf2lynibwzpi7ficf7w240nq23d15"; depends=[curl digest pdftools rappdirs Rcpp tibble]; };
+  tensr = derive2 { name="tensr"; version="1.0.1"; sha256="1z6b3ra7fgn88mxbhsq65x3frj5j7p17n119s9kbw7sg9y633vfx"; depends=[assertthat]; };
+  tergm = derive2 { name="tergm"; version="3.5.2"; sha256="0p7qcr59p6n7snzspv02m8gn26rgk3rp2hxilmp5jailk43zid35"; depends=[coda ergm MASS network networkDynamic nlme robustbase statnet_common]; };
+  tesseract = derive2 { name="tesseract"; version="2.3"; sha256="14v6ac0p6nc76ks1vkrcz74lpmib7hrp5m6gw4vh6pl68cwmd0y6"; depends=[curl digest pdftools rappdirs Rcpp tibble]; };
+  testDriveR = derive2 { name="testDriveR"; version="0.4.0"; sha256="1ri5wa0qab3mn921vycxrmzhs0g95dsdj1vxvcr5a999wggwabak"; depends=[]; };
   testassay = derive2 { name="testassay"; version="0.1.0"; sha256="06gks3k04m45kn946i525261v33ymwxpvgdy84kc7sp01xxx4rfv"; depends=[]; };
   tester = derive2 { name="tester"; version="0.1.7"; sha256="1x5m43abk3x3fvb2yrb1xwa7rb4jxl8wjrnkyd899ii1kh8lbimr"; depends=[]; };
   testforDEP = derive2 { name="testforDEP"; version="0.2.0"; sha256="1mgzhj8b35r5cm4bl0nnyxj0h7rwd28d17qvgvaky2kvm2r83cf9"; depends=[Hmisc minerva Rcpp]; };
   testit = derive2 { name="testit"; version="0.8"; sha256="1xwpimphcv23ps824s6s77y9w8xww0imm22qmgs61bifjsfc3a88"; depends=[]; };
-  testthat = derive2 { name="testthat"; version="2.0.0"; sha256="155l53kb69jga5d8c5nvdwqlvlgfmk4vzyyl4d0108j53jnlgh1v"; depends=[cli crayon digest magrittr praise R6 rlang withr]; };
-  testthis = derive2 { name="testthis"; version="1.0.3"; sha256="1q42nhp4nsazn31lxymb3zfj928ygbiv6jy7f0j4m3p02w2hqz5n"; depends=[assertthat devtools magrittr rprojroot stringi testthat usethis]; };
+  testthat = derive2 { name="testthat"; version="2.0.1"; sha256="1cafy5xsjx6m08s45456mjsal7mfxzwpbrds0p4z3gwam948gpzy"; depends=[cli crayon digest magrittr praise R6 rlang withr]; };
+  testthis = derive2 { name="testthis"; version="1.0.4"; sha256="1gdfpxrgk801ai98mla7hczsa4m85wqsjbc3xk7ngq0dd0knz2j3"; depends=[assertthat devtools magrittr pkgload stringi testthat usethis]; };
   tetraclasse = derive2 { name="tetraclasse"; version="0.1.21"; sha256="1cl2cah0xi6x3rvvdy56iszai6rkbxc1w3x13v0l1z1nryff7c6a"; depends=[dplyr FactoMineR ggplot2 ggrepel magrittr reshape2 tibble tidyr]; };
-  texPreview = derive2 { name="texPreview"; version="1.1.4"; sha256="1xix13vh3haganyb67rrmrsy2nsk053wq83y9ky99wk5gmxpjmxf"; depends=[base64enc htmltools magick rstudioapi svgPanZoom xml2]; };
-  texmex = derive2 { name="texmex"; version="2.4"; sha256="0s3x681f1qnbgmzi5iwqpmkfzpx9gsccd3q1vz1dppzq8fbid3c2"; depends=[ggplot2 mvtnorm]; };
+  texPreview = derive2 { name="texPreview"; version="1.2.3"; sha256="0yl8y94jc6b23nmby2ff52yzgx95xma4bzd3w46az7b6pg7a2bxb"; depends=[base64enc htmltools magick rematch2 rstudioapi svgPanZoom whisker xml2]; };
+  texmex = derive2 { name="texmex"; version="2.4.2"; sha256="01qx4f5f0gf0xz85lzxxv79fp7syd7x484iw711rbnv0nw3aqwa2"; depends=[ggplot2 mvtnorm Rcpp]; };
   texreg = derive2 { name="texreg"; version="1.36.23"; sha256="0yxaqimd7cyfrfpia6fnqm15lgs0bf5zyjzmnfm1v4qmf8kj8x6v"; depends=[]; };
   text2vec = derive2 { name="text2vec"; version="0.5.1"; sha256="0vcp50mgpgxbf534vd8l56m8006i3sh8a4v9nrf9vxkq2pv7xygc"; depends=[data_table digest foreach futile_logger irlba Matrix mlapi R6 Rcpp RcppParallel sparsepp stringi]; };
-  textTinyR = derive2 { name="textTinyR"; version="1.1.1"; sha256="0i35mfvrqz524089zysd1dyhfk6ndr1azxps01vls9rvgyw9452i"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; };
+  textTinyR = derive2 { name="textTinyR"; version="1.1.2"; sha256="177m3mh61isjk9svbnv5gdlpyfy7fdmafi2znxh2m7fqcwn7k3af"; depends=[BH data_table Matrix R6 Rcpp RcppArmadillo]; };
   textcat = derive2 { name="textcat"; version="1.0-5"; sha256="039bzyz4jvh1hl2a2pfp328kr2mpb1a07j79yqf5cbqk3d5a197b"; depends=[slam tau]; };
-  textclean = derive2 { name="textclean"; version="0.9.2"; sha256="1xf5krbc8nr0yk63mcdlzbn3r58m4l4wgxhp54bahvn0ff8cwsjb"; depends=[data_table english glue lexicon mgsub qdapRegex stringi textshape]; };
+  textclean = derive2 { name="textclean"; version="0.9.3"; sha256="0kgjh6c4f14qkjc4fds7q7rpf4nkma3p0igm54fplmm3p853nvrz"; depends=[data_table english glue lexicon mgsub qdapRegex stringi textshape]; };
   texteffect = derive2 { name="texteffect"; version="0.1"; sha256="0fwcbz7bpynvcivac16z77j8d398bf7vl4l8sppi9yvg72l0k94w"; depends=[boot ggplot2 MASS]; };
   textfeatures = derive2 { name="textfeatures"; version="0.1.1"; sha256="0pcs3nax21npb5blbwrmzl7q85ya8n7vgjn83z2abjr80gj3f5lj"; depends=[dplyr rlang tibble]; };
   textgRid = derive2 { name="textgRid"; version="1.0.1"; sha256="1wi5vq5f7ixhz39l5hqi2jlmjjacx4lyrs4h8xfbd47pj6g16lc6"; depends=[]; };
   textile = derive2 { name="textile"; version="0.1.2"; sha256="067zli6sl7bp9843spgx47hmw55aq61yinqw1lqifmrpk7b0ywk5"; depends=[]; };
   textir = derive2 { name="textir"; version="2.0-5"; sha256="0ban5qiinlxizqpcgafv4b5gwxlil6jdfarjd6l1m48awxh3mlnb"; depends=[distrom gamlr Matrix]; };
-  textmineR = derive2 { name="textmineR"; version="2.1.2"; sha256="1lhk4ix8h138vrn2l1ivcwgv2d9i7xgccn7c6h6gxxc5dpzwdsyk"; depends=[lda Matrix Rcpp RcppArmadillo RcppProgress RSpectra SnowballC stringr text2vec tm topicmodels]; };
+  textmineR = derive2 { name="textmineR"; version="2.1.3"; sha256="120zhg63q09m1fs08kivw15scvy2dc66xc9f1vrd4vgx8wlgn70b"; depends=[lda Matrix Rcpp RcppArmadillo RcppProgress RSpectra SnowballC stringr text2vec tm]; };
   textmining = derive2 { name="textmining"; version="0.0.1"; sha256="16wiykhrjs4djwa7q2wm4g8b3mrhh6hq9d9876w1j7c2s6zx69gd"; depends=[caret dplyr koRpus mallet networkD3 NLP rJava slam SnowballC stylo tm topicmodels wordcloud]; };
   textometry = derive2 { name="textometry"; version="0.1.4"; sha256="17k3v9r5d5yqgp25bz69pj6sw2j55dxdchq63wljxqkhcwxyy9lh"; depends=[]; };
   textrank = derive2 { name="textrank"; version="0.2.0"; sha256="0s2mnid3dha3nyyc9abhb36vlij4bg0024i9ay4pvvy4l1x947gr"; depends=[data_table digest igraph]; };
-  textreadr = derive2 { name="textreadr"; version="0.7.0"; sha256="081lqqclx2dlrv341178dagd5zajndf27lbrkrv78668cdfk58xr"; depends=[antiword curl data_table pdftools readxl rvest striprtf textshape xml2]; };
-  textreg = derive2 { name="textreg"; version="0.1.4"; sha256="0k7hpvvhacz29d3mvnygg6rqmh9f3ghkcp7kjmvv9jnr2ipw2j21"; depends=[NLP Rcpp tm]; };
+  textreadr = derive2 { name="textreadr"; version="0.9.0"; sha256="04nyjrfxgwq8g3bdj12nnkia2xn2zngk1rprlkpyicrisgq36agk"; depends=[antiword curl data_table pdftools readxl rvest striprtf textshape xml2]; };
+  textreg = derive2 { name="textreg"; version="0.1.5"; sha256="0h44z5hyndnvzd9axix7gpmhbdx347dfgxw9r8w38kyw6dklbjy6"; depends=[NLP Rcpp tm]; };
   textreuse = derive2 { name="textreuse"; version="0.1.4"; sha256="0qfp7ffzb5p3k3wiw8i1zjskni8f38rzkjnss97j9f3vhhb8j4r7"; depends=[assertthat BH digest dplyr NLP Rcpp RcppProgress stringr tidyr]; };
   textshape = derive2 { name="textshape"; version="1.6.0"; sha256="1pl85wjq5rl25gdlh4cp0l14hn76rrmpl7l1fn7kq9lwj9yfpcs8"; depends=[data_table slam stringi]; };
   textstem = derive2 { name="textstem"; version="0.1.4"; sha256="1pbhi5ia3w16vsix2x3if51zd2v9bcv0j4lj9hfikgq1yz9zxmw2"; depends=[dplyr hunspell koRpus koRpus_lang_en lexicon quanteda SnowballC stringi textclean textshape]; };
-  textutils = derive2 { name="textutils"; version="0.1-6"; sha256="0xvsd6pfg4kv40l14xcvmirqiq8rmky4s8v8diagzri3a7i45nqn"; depends=[]; };
-  tfdatasets = derive2 { name="tfdatasets"; version="1.5"; sha256="1ik6rzfnjmm54m7s2rvp1bq5jk0k2vl631bz3db3dk639jndiz6a"; depends=[magrittr reticulate rlang tensorflow tidyselect]; };
+  textutils = derive2 { name="textutils"; version="0.1-9"; sha256="13fy5krm8giprw0jjdws8p4c5fra6r4vhbyzpf5aksacy125j66y"; depends=[]; };
+  tfdatasets = derive2 { name="tfdatasets"; version="1.9"; sha256="1djq3ywkzbnmmfr3fbdi6pg4sapqjh53dm2p5bil8f41maak12b7"; depends=[magrittr reticulate rlang tensorflow tidyselect]; };
   tfer = derive2 { name="tfer"; version="1.1"; sha256="19d31hkxs6dc4hvj5495a3kmydm29mhp9b2wp65mmig5c82cl9ck"; depends=[]; };
-  tfestimators = derive2 { name="tfestimators"; version="1.5"; sha256="069j6d5i19yc3nhxrrzwzassv4fv3bdhygxvqqc49nndyf5vwwbj"; depends=[magrittr progress purrr reticulate rlang tensorflow tfruns tibble tidyr tidyselect]; };
+  tfestimators = derive2 { name="tfestimators"; version="1.9.0"; sha256="0yfnwiszxypzinzl2qzbl317lm1xfshg4228c7h6z8im5da59x9p"; depends=[magrittr progress purrr reticulate rlang tensorflow tfruns tibble tidyr tidyselect]; };
   tfplot = derive2 { name="tfplot"; version="2015.12-1"; sha256="1x007j6ibbzfr0kncvsr4c7295jv3c4amg2dpyjvdir9h665nc23"; depends=[tframe]; };
   tframe = derive2 { name="tframe"; version="2015.12-1"; sha256="0k0favda3z6zdg7ykc2nnl28gxz7sfzbyr5pcifiyi984pa2zgfx"; depends=[]; };
   tframePlus = derive2 { name="tframePlus"; version="2016.7-1"; sha256="12xi2xw4pr78n3cppfknpxmjp2263pb4kqj9v412yxwp82rgb6yk"; depends=[tframe timeSeries]; };
-  tfruns = derive2 { name="tfruns"; version="1.3"; sha256="02ib3k3jsmskk5cdxl2nyvnvpn7nlkgjb353z7qlwal0fgrssaln"; depends=[base64enc config jsonlite magrittr reticulate rlang rstudioapi tidyselect whisker yaml]; };
+  tfruns = derive2 { name="tfruns"; version="1.4"; sha256="1mqv5m13qm1dqz0622jd5ayb3nk76lfa657y2hyqv261flxizhvg"; depends=[base64enc config jsonlite magrittr reticulate rlang rstudioapi tidyselect whisker yaml]; };
+  tfse = derive2 { name="tfse"; version="0.4.2"; sha256="06d2v69xcikzilbc1hkl1hw54r3sjng7mgiswyg0san50swgs7l2"; depends=[]; };
   tgcd = derive2 { name="tgcd"; version="2.0"; sha256="1553f464jpmngdj8fmbjn9cpmrcp4ysgsfx4w7q4pm4csslsqvlr"; depends=[]; };
   tggd = derive2 { name="tggd"; version="0.1.1"; sha256="1izar1b3w148vp2r8gv3vpwfndib8ilxcjxgbfzbxn7q5mr73mwa"; depends=[gsl]; };
   tgp = derive2 { name="tgp"; version="2.4-14"; sha256="1l3kssjkh5sbrh75qdpmynjfnidgz8vmzq1jml1qm1yfwval8ak1"; depends=[maptree]; };
@@ -12018,34 +12546,40 @@ in with self; {
   thgenetics = derive2 { name="thgenetics"; version="0.4-2"; sha256="1314gry3xs9v4jy13g08q16qy4ax3s0bc7d74gi0wbpkgdrk3lql"; depends=[]; };
   thief = derive2 { name="thief"; version="0.3"; sha256="12ymkkisg5p0g1gmvlczhp4dc7mirjg55fqqmz2d90673vlg6rfq"; depends=[forecast ggplot2 hts]; };
   thinkr = derive2 { name="thinkr"; version="0.13"; sha256="1j43mjznriq8d5ki50rb41vgmzj2gq8sahvhj11742ggxd0bzvdb"; depends=[assertthat devtools dplyr ggplot2 lazyeval lubridate magrittr officer rvg stringi stringr tidyr]; };
+  thor = derive2 { name="thor"; version="1.0.1"; sha256="02yyn8sp2s8qhxhwhc4f4921014c5q70b5x2r00jbqlwg069szj2"; depends=[R6 storr]; };
   threeboost = derive2 { name="threeboost"; version="1.1"; sha256="033vwn42ys81w6z90w5ii41xfihjilk61vdnsgap269l9l0c8gmn"; depends=[Matrix]; };
   threejs = derive2 { name="threejs"; version="0.3.1"; sha256="1s3rdlzy7man6177ycayg6xsh6k8y1r9rdj9yzn3b93j2rs0nxbi"; depends=[base64enc crosstalk htmlwidgets igraph]; };
   threewords = derive2 { name="threewords"; version="0.1.0"; sha256="083y5i4qyl1wj017wy5ywl2yx9wvrpjl9g9k9clvnrbwzbycx2cg"; depends=[httr]; };
   threg = derive2 { name="threg"; version="1.0.3"; sha256="1ja0w4hhdkw3b1cipbpw8ym27k5lh2m7gibd74mj6gij7rpixrnb"; depends=[Formula survival]; };
   thregI = derive2 { name="thregI"; version="1.0.4"; sha256="0zddd32fnfi98zwq08akkvhkg3c66sj3jii6ap8p1m9a0wg2k2k3"; depends=[Formula survival]; };
   threshr = derive2 { name="threshr"; version="1.0.0"; sha256="1zrhmqpz3k2gyddrzg96yyyc1jffj3aic2dmbidxxc97b9g5hi53"; depends=[revdbayes rust]; };
+  thriftr = derive2 { name="thriftr"; version="1.0.3"; sha256="08d9xi0czy8ci0aci75prjvfhpkmdw23qvcviap9kz2hr9x23183"; depends=[R6 rly stringi]; };
   thsls = derive2 { name="thsls"; version="0.1"; sha256="18z7apskydkg7iqrs2hgnzby578qsvyd73wx8v4z3aa338lssdi7"; depends=[Formula]; };
   tibble = derive2 { name="tibble"; version="1.4.2"; sha256="05svbjkm1xqv56ybjgsqqg2pp8nn6hams1yxcr8aanbhzx9h6rqi"; depends=[cli crayon pillar rlang]; };
   tibbletime = derive2 { name="tibbletime"; version="0.1.1"; sha256="15rp66p4pgiv7fd0rx1pzqlpsg4i4j5j368cwqm1mf1m4xknz6yy"; depends=[assertthat dplyr glue hms lubridate purrr Rcpp rlang tibble zoo]; };
   tibbrConnector = derive2 { name="tibbrConnector"; version="1.5.1"; sha256="1r58myi7x4hqqvyrphxy4ppa1lnad6x2ginfq2j52ax53zr07ajp"; depends=[RCurl rjson]; };
   tictactoe = derive2 { name="tictactoe"; version="0.2.2"; sha256="1fx8plj5zr04xwk5hfj3zqhcknidxlzya2q14cf0m3y33a86lx42"; depends=[hash]; };
   tictoc = derive2 { name="tictoc"; version="1.0"; sha256="1zp2n8k2ax2jjw89dsri268asmm5ry3ijf32wbca5ji231y0knj7"; depends=[]; };
-  tidyLPA = derive2 { name="tidyLPA"; version="0.1.3"; sha256="1yk9abn21ycfdr1h43shjaymga5j9z862mp1zbwj2wbxxv6m5pp7"; depends=[dplyr forcats ggplot2 magrittr mclust purrr readr rlang stringr tibble tidyr]; };
-  tidyRSS = derive2 { name="tidyRSS"; version="1.2.4"; sha256="0dvpaawwm6jbwxiilxllzmifjwx9spbl57jmi8lkcq948abn84vg"; depends=[dplyr httr jsonlite lubridate magrittr purrr sf stringr testthat tibble xml2]; };
+  tidyLPA = derive2 { name="tidyLPA"; version="0.2.2"; sha256="0z9yh4wa9mzly5g3jkqap70zh7l3s2xzgjjrhzyvshd82g1bs7ac"; depends=[dplyr forcats ggplot2 magrittr mclust purrr readr rlang stringr tibble tidyr]; };
+  tidyRSS = derive2 { name="tidyRSS"; version="1.2.6"; sha256="1kwc0bnpz4gi05j2yz6c4r30jhd1dvcqcpajaxlmnwnblpcp033f"; depends=[dplyr httr jsonlite lubridate magrittr purrr sf stringr testthat tibble xml2]; };
+  tidybayes = derive2 { name="tidybayes"; version="1.0.3"; sha256="1dkkzfbbq94vrrswf3g6dcds4vpvjn2kldf91f7642qf6kdgy135"; depends=[arrayhelpers coda dplyr forcats ggplot2 ggridges ggstance HDInterval LaplacesDemon magrittr MASS plyr purrr rlang stringi stringr tibble tidyr tidyselect]; };
   tidyboot = derive2 { name="tidyboot"; version="0.1.1"; sha256="0nss1ci763g9p5f33g163ppamx72axc8xhrils0cql3ka8439pmn"; depends=[dplyr modelr purrr rlang tidyr]; };
-  tidycensus = derive2 { name="tidycensus"; version="0.4.6"; sha256="1czfdwm5bn0xpqm43mvb5bd30m5kdxikaq21gxkj41r78z69qncl"; depends=[dplyr httr jsonlite purrr rappdirs readr rvest sf stringr tidyr tigris units xml2]; };
+  tidycensus = derive2 { name="tidycensus"; version="0.8.1"; sha256="1xw3r53wy3sy8rc08nprs4xfxplq6h1gmy1lhcwi8db922nyb671"; depends=[dplyr httr jsonlite purrr rappdirs readr rvest sf stringr tidyr tigris units xml2]; };
   tidygenomics = derive2 { name="tidygenomics"; version="0.1.0"; sha256="0n6km2zhdmbgacn6rzamrn506d9y3sl6yp2q6fd9x7kzgz09aq4n"; depends=[dplyr fuzzyjoin IRanges purrr Rcpp tidyr]; };
   tidygraph = derive2 { name="tidygraph"; version="1.1.0"; sha256="1cqmii1pia5s8cj1hfm5jh4qgg9dn65dcb666bqfhq51nzgwy6b4"; depends=[dplyr igraph magrittr R6 Rcpp rlang tibble tidyr]; };
-  tidyhydat = derive2 { name="tidyhydat"; version="0.3.4"; sha256="03kjcvh6g6xwd72fm8yyflyy72zm6fd8d0rlb6wabzq7hbzhfpp0"; depends=[cli crayon DBI dbplyr dplyr httr lubridate rappdirs readr rlang RSQLite tidyr]; };
+  tidyhydat = derive2 { name="tidyhydat"; version="0.3.5"; sha256="1b82pxkn54kil661hkc5dp52nkl4sdbc0qr835ax1j00ix4hzi0b"; depends=[cli crayon DBI dbplyr dplyr httr lubridate rappdirs readr rlang RSQLite tidyr]; };
   tidyimpute = derive2 { name="tidyimpute"; version="0.1.0"; sha256="03b475nn206hxq3i0n7j1qws82rwwk5vqivmdg5mff44dvz4gl5s"; depends=[dplyr na_tools rlang]; };
+  tidymodels = derive2 { name="tidymodels"; version="0.0.1"; sha256="1ijl9hkdnqiszzgnm7bk8mq34anm6xqwa1hv3q9kh3iwph9mi10c"; depends=[broom cli crayon dplyr ggplot2 infer magrittr pillar purrr recipes rlang rsample rstudioapi tibble tidyposterior tidypredict tidytext yardstick]; };
   tidyposterior = derive2 { name="tidyposterior"; version="0.0.1"; sha256="09q2j6kjwqphdzi60w26mlax9fnmndw7s3fsxfcj0pjjl8688w52"; depends=[broom dplyr ggplot2 purrr rlang rsample rstanarm tibble tidyr]; };
   tidypredict = derive2 { name="tidypredict"; version="0.2.0"; sha256="1hq9xzaa234679qvf02nc5w8l21yh1f3dhl76zxzqc7na7chn13k"; depends=[dplyr purrr rlang tibble tidyr]; };
   tidyquant = derive2 { name="tidyquant"; version="0.5.5"; sha256="0kh3y291j5d6qbqr45jjzjpwa02r0ymb7gdr0zd9g3d4czllwv95"; depends=[dplyr ggplot2 httr lazyeval lubridate magrittr PerformanceAnalytics purrr Quandl quantmod rlang stringr tibble tidyr tidyverse timetk TTR xml2 xts]; };
-  tidyr = derive2 { name="tidyr"; version="0.8.1"; sha256="0485f19mkkglc4bv57y6bm6l9rfgd878hsz2xdg1nwgbqchjhgix"; depends=[dplyr glue magrittr purrr Rcpp rlang stringi tibble tidyselect]; };
-  tidyselect = derive2 { name="tidyselect"; version="0.2.4"; sha256="1592dbzawhd1hpsp9919l4sifyiaaj6xr7lnhsbwa6jwmmb0xcsw"; depends=[glue purrr Rcpp rlang]; };
+  tidyr = derive2 { name="tidyr"; version="0.8.2"; sha256="03s9dv6c2dj65a769h8fgy9878y46rdq7x65i53kd44kag80i9cr"; depends=[dplyr glue magrittr purrr Rcpp rlang stringi tibble tidyselect]; };
+  tidyselect = derive2 { name="tidyselect"; version="0.2.5"; sha256="0x3cp36byhfjajikr1lwffjm85ayw3bcs7d7kb0cydgs61ifiqjw"; depends=[glue purrr Rcpp rlang]; };
   tidystats = derive2 { name="tidystats"; version="0.2"; sha256="15f12zizgql1y303pr4vhmvpmpxib0wpybd0b5gbx281iglpdsc0"; depends=[dplyr knitr magrittr purrr readr stringr tibble tidyr]; };
   tidystringdist = derive2 { name="tidystringdist"; version="0.1.2"; sha256="1jk5yqkjf33arbbfgfzk7ym943gy95n3yncybmvwbjsff07qpmaw"; depends=[attempt dplyr magrittr purrr rlang stringdist]; };
-  tidytext = derive2 { name="tidytext"; version="0.1.9"; sha256="1hkxg23cc44496w8nvrm1zsbk05fhk423k12ss6ay2da3n8khi0f"; depends=[broom dplyr hunspell janeaustenr Matrix purrr rlang stopwords stringr tokenizers]; };
+  tidytext = derive2 { name="tidytext"; version="0.2.0"; sha256="15xyn7mz81cm6dqsjvdb681q2sag9pp62kv11y0blyxd81wpy994"; depends=[broom dplyr hunspell janeaustenr Matrix purrr rlang stopwords stringr tokenizers]; };
+  tidytidbits = derive2 { name="tidytidbits"; version="0.1.0"; sha256="154k3gn87fnmzhldyp7h0rq5gxpndwaf4gahqydhsh9i6dq61lk7"; depends=[dplyr extrafont forcats magrittr purrr rlang stringr tibble tidyr tidyselect]; };
+  tidytransit = derive2 { name="tidytransit"; version="0.3.5"; sha256="0pxkn162i601lc8lwci1j4ns44yxc1d7zy7c7423ccqjpj85nm7g"; depends=[assertthat dplyr here htmltools httr lubridate magrittr readr rlang scales sf stringr tibble tidyr zip]; };
   tidytree = derive2 { name="tidytree"; version="0.1.9"; sha256="0bxgmwamiclr4fnn5dk7hnkl7jf4p1fgwga2gfa3a6lwa79qgpwn"; depends=[ape dplyr lazyeval magrittr tibble]; };
   tidyverse = derive2 { name="tidyverse"; version="1.2.1"; sha256="0yy3fkjksgcn6wkbgsb0pbnmsyqs4m01mziqafhig578nixs4rxd"; depends=[broom cli crayon dbplyr dplyr forcats ggplot2 haven hms httr jsonlite lubridate magrittr modelr purrr readr readxl reprex rlang rstudioapi rvest stringr tibble tidyr xml2]; };
   tidyxl = derive2 { name="tidyxl"; version="1.0.3"; sha256="02icd5xwyimdlzrn6ikj6rrs3kj3qw1ngap69cf89mvmlkp93y79"; depends=[piton Rcpp]; };
@@ -12053,7 +12587,7 @@ in with self; {
   tiger = derive2 { name="tiger"; version="0.2.3.1"; sha256="0xr56c46b956yiwkili6vp8rhk885pcmfyd3j0rr4h8sz085md6n"; depends=[e1071 hexbin klaR lattice qualV som]; };
   tigerhitteR = derive2 { name="tigerhitteR"; version="1.1.0"; sha256="0inyi12lf8bn7nbklf2rjixk6wrgrjcp8njv7knai4dgvv7v0rfa"; depends=[Hmisc magrittr openxlsx zoo]; };
   tigerstats = derive2 { name="tigerstats"; version="0.3"; sha256="12wrghipgypkhwwkmaxb6n0qx9fgxk82dc6wlh56rblsvciv2hj0"; depends=[abd ggplot2 lattice manipulate MASS mosaic mosaicData]; };
-  tigger = derive2 { name="tigger"; version="0.2.11"; sha256="1kbqlfr3lsiiv0l7dzahna706zb4mx0gfx91220n2ckfc81pyrv5"; depends=[alakazam doParallel dplyr foreach ggplot2 iterators lazyeval tidyr]; };
+  tigger = derive2 { name="tigger"; version="0.3.1"; sha256="1ay8al764adpzabwsinxg97y2mz28k6y1m8ckfxhi9h11az23hid"; depends=[alakazam doParallel dplyr foreach ggplot2 gridExtra gtools iterators lazyeval rlang shazam stringi tidyr]; };
   tightClust = derive2 { name="tightClust"; version="1.1"; sha256="0vqkp2g6z8y3b6dhzglmacjhf2qi1sg80kb941mwfafin2k40zbm"; depends=[]; };
   tigreBrowserWriter = derive2 { name="tigreBrowserWriter"; version="0.1.5"; sha256="0izgx1khci6qc6pz85dxj75kzxvpr30l0vhcv9476jrcbwqs4k8m"; depends=[DBI RSQLite]; };
   tigris = derive2 { name="tigris"; version="0.7"; sha256="0azfp8ahf63a10862669wsamf0270rcyrmknc331vjs52b3qlrvl"; depends=[dplyr httr magrittr maptools rappdirs rgdal sf sp stringr uuid]; };
@@ -12074,8 +12608,8 @@ in with self; {
   timeordered = derive2 { name="timeordered"; version="0.9.9"; sha256="0rfga5i6kckmlz2dzqb1pp634dl93wxp7v3kisxlbjl7mgnbck3k"; depends=[igraph plyr]; };
   timereg = derive2 { name="timereg"; version="1.9.2"; sha256="0ddckk8vrfkk4kwlrjms6niry6g6c8dz0yf96z2kq03jgs06kfdh"; depends=[lava numDeriv survival]; };
   timesboot = derive2 { name="timesboot"; version="1.0"; sha256="1ixmcigi1bf42np93md8d3w464papg9hp85v0c3hg3vl4nsm2bji"; depends=[boot]; };
-  timeseriesdb = derive2 { name="timeseriesdb"; version="0.2.1"; sha256="0150zs8c8184jzry33aki21prmpnxp3rclp84q6igwxi4grdhlr0"; depends=[DBI reshape2 RJSONIO RPostgreSQL shiny xts zoo]; };
-  timetk = derive2 { name="timetk"; version="0.1.1"; sha256="0m8l9ivww5aykdfab6bk9khy7jqkd3yrzbz2r78xnsfzipa9bzmk"; depends=[devtools dplyr forecast lazyeval lubridate padr purrr readr stringi tibble tidyr xts zoo]; };
+  timeseriesdb = derive2 { name="timeseriesdb"; version="0.4.1"; sha256="1ghb3lg63fs9zx34l5qczv39mdccnmqzlc74l1zhb8qmsg8sm1g2"; depends=[data_table DBI jsonlite openxlsx RPostgreSQL shiny xtable xts zoo]; };
+  timetk = derive2 { name="timetk"; version="0.1.1.1"; sha256="0ca6xnsidc98yjb52gbafvfgxzdgszj8l9hvc77mwgc33g0ydvs1"; depends=[devtools dplyr forecast lazyeval lubridate padr purrr readr stringi tibble tidyr xts zoo]; };
   timetools = derive2 { name="timetools"; version="1.14"; sha256="13jchgd9fc8hxj74wm1kg4rwcng4yxblkq04i33djsqghgb5f9mj"; depends=[]; };
   timetree = derive2 { name="timetree"; version="1.0"; sha256="1fpdp6mkwm67svqvkfflvqxn52y2041zl09rxrms28ybbd5f84c0"; depends=[phangorn XML]; };
   timevis = derive2 { name="timevis"; version="0.4"; sha256="08caa5gilh1c0z41lm3ghf6cpnlsdjfm1v7ha73jxv1655kznmpx"; depends=[htmltools htmlwidgets jsonlite magrittr rmarkdown shiny]; };
@@ -12084,46 +12618,48 @@ in with self; {
   tinsel = derive2 { name="tinsel"; version="0.0.1"; sha256="0n1x0cf4x6cq1yks0444nxd9snga4m6inc5lfvb7k96fzjb3xgbp"; depends=[]; };
   tint = derive2 { name="tint"; version="0.1.0"; sha256="1hczc2nrm8xgvw3igkfnlqyz73686l447kigsrd6m796v8ny1gbf"; depends=[htmltools knitr rmarkdown]; };
   tinyProject = derive2 { name="tinyProject"; version="0.5"; sha256="10sllhjcla4pfgp5n1y5vi318q9bcy82j88rx3k1sgzmbq1nc1c2"; depends=[brew devtools]; };
-  tinytex = derive2 { name="tinytex"; version="0.5"; sha256="1pg4jfyvandjwz3lmr38pbqi9d045iwkk3xklhsfhhxq6aviq9p7"; depends=[]; };
-  tiobeindexr = derive2 { name="tiobeindexr"; version="0.1.0"; sha256="045b0c0mn3qlasclpzc2k3x1xlmcdvg2ixc2n9m6gjmhp2fdm499"; depends=[rvest xml2]; };
+  tinytex = derive2 { name="tinytex"; version="0.9"; sha256="08w5hyq3ysh631d5whgcfv1bb007cdc0bjhb83vwmhazs6rgvyjy"; depends=[xfun]; };
+  tiobeindexr = derive2 { name="tiobeindexr"; version="0.1.1"; sha256="09vw83hkf7lgd3xyhbmqkyv57g3dz856230xkf8630jiicfvcg3b"; depends=[rvest xml2]; };
   tipom = derive2 { name="tipom"; version="1.0.2-1"; sha256="1gdfv0g5dw742j6ycmi0baqh6xcchp3yf2n1g8vn7jmqgz5mlhdr"; depends=[]; };
   tippy = derive2 { name="tippy"; version="0.0.1"; sha256="0kkyi4s4ffpyjyfl89cd5y788ab1p253rx179k422y3y1z6w1md7"; depends=[htmltools htmlwidgets jsonlite shiny]; };
   tipr = derive2 { name="tipr"; version="0.1.1"; sha256="138xmkfad0xjrmr9v3ladbwsyknyad27wxcav03n6f72plhxmxb6"; depends=[broom purrr tibble]; };
   tis = derive2 { name="tis"; version="1.34"; sha256="01bpl8q2n49wpr2gghkcv1zf16b3375xa71mv0q7wwn0da3n7m0n"; depends=[]; };
   titan = derive2 { name="titan"; version="1.0-16"; sha256="0x30a877vj99z3fh3cw9762j5ci56964j2466xfbwcywhn9njz5r"; depends=[boot lattice MASS]; };
   titanic = derive2 { name="titanic"; version="0.1.0"; sha256="0mdmh0ciwfig00847bmvp50cyvj8pra6q4i4vdg7md19z5rjlx3j"; depends=[]; };
+  titeIR = derive2 { name="titeIR"; version="0.1.0"; sha256="047vidn3zydbjijwgz6qm2d9j2ny8ng2sv5jzm8zb300y7k2426c"; depends=[Iso]; };
   titrationCurves = derive2 { name="titrationCurves"; version="0.1.0"; sha256="0z127sihd262mdik46sq9vcf05s7jsqmkpm3p4d779viw74bl768"; depends=[]; };
   tkRplotR = derive2 { name="tkRplotR"; version="0.1.1"; sha256="0fr30c2xjgpjh0pkqv0m7g413wkzzffbak7ak26k7bsi2ls341qa"; depends=[]; };
   tkrgl = derive2 { name="tkrgl"; version="0.8"; sha256="1c5jiahqpf3nfybkzmks785dlkchjdisvknxkb0biv3xj9nzgz14"; depends=[rgl]; };
-  tkrplot = derive2 { name="tkrplot"; version="0.0-23"; sha256="1cnyszn3rmr1kwvi5a178dr3074skdijfixf5ln8av5wwcy35947"; depends=[]; };
+  tkrplot = derive2 { name="tkrplot"; version="0.0-24"; sha256="04gk48vm8ilj1n3b3ir66pcfv504ra4rlgc0ll4ixbnp6w566wr8"; depends=[]; };
   tlemix = derive2 { name="tlemix"; version="0.1.3"; sha256="0c4mvdxlhbmyxj070xyipx4c27hwxlb3c5ps65ipm6gi8v8r6spj"; depends=[]; };
   tlm = derive2 { name="tlm"; version="0.1.5"; sha256="1iw08pa70nb25fnv64834s5c8vl456a2rcng7x6v9vs5q37610g6"; depends=[boot]; };
   tlmec = derive2 { name="tlmec"; version="0.0-2"; sha256="1gak8vxmfjf05bhaj6lych7bm8hgav1x3h14k2ra7236v82rqbw7"; depends=[mvtnorm]; };
-  tm = derive2 { name="tm"; version="0.7-4"; sha256="1vvc0arl1w5g8r8bp5w95w79d7hnyfvkhsw5nq2qxql1sjsq69ya"; depends=[BH NLP Rcpp slam xml2]; };
+  tls = derive2 { name="tls"; version="0.1.0"; sha256="183b5m70s2whlgp9s1gb4xnylhlp4hnh3lw6b8f2vx4kahaid763"; depends=[]; };
+  tm = derive2 { name="tm"; version="0.7-5"; sha256="05x3kj6dxffcfyn42q2fw9bby5f4wdmslc3ww1dl0r09pz950cax"; depends=[BH NLP Rcpp slam xml2]; };
   tm_plugin_alceste = derive2 { name="tm.plugin.alceste"; version="1.1"; sha256="0wid51bbbx01mjfhnaiv50vfyxxmjxw8alb73c1hq9wlsh3x3vjf"; depends=[NLP tm]; };
   tm_plugin_dc = derive2 { name="tm.plugin.dc"; version="0.2-8"; sha256="0z843i2wlmx75748p95jz3j45d9bzmlmqa3awgya24k7bdhpd6kd"; depends=[DSL NLP slam tm]; };
   tm_plugin_europresse = derive2 { name="tm.plugin.europresse"; version="1.4"; sha256="03qi9rkfwgjvir4cjpi9imc8zaldvan42v9lqfr5d6zhr0ajy6wx"; depends=[NLP tm XML]; };
   tm_plugin_factiva = derive2 { name="tm.plugin.factiva"; version="1.7"; sha256="1zcddarjd083p3sly49wvsnbn6bmpx5wd1bqm3acgydxk8y84nif"; depends=[NLP rvest tm xml2]; };
   tm_plugin_lexisnexis = derive2 { name="tm.plugin.lexisnexis"; version="1.4.0"; sha256="0q4njhfpwqym9d8xfbb577vn6g9ks4nkpb4bh6j31nzg7yp96av7"; depends=[ISOcodes NLP tm xml2]; };
-  tm_plugin_mail = derive2 { name="tm.plugin.mail"; version="0.1"; sha256="0ca2w2p5zv3qr4zi0cj3lfz36g6xkgkbck8pdxq5k65kqi5ndzyp"; depends=[NLP tm]; };
+  tm_plugin_mail = derive2 { name="tm.plugin.mail"; version="0.2-1"; sha256="0rn8jqv622qmc0zkz534ka5qnbca2rlabxm3vjbqplr6fh1ahwb1"; depends=[NLP tm]; };
   tm_plugin_webmining = derive2 { name="tm.plugin.webmining"; version="1.3"; sha256="1694jidf01ilyk286q43bjchh1gg2fk33a2cwsf5jxv7jky3gl7h"; depends=[boilerpipeR NLP RCurl RJSONIO tm XML]; };
-  tmap = derive2 { name="tmap"; version="1.11-2"; sha256="1cinbsfhi8pngidxp3brmba1willknavlrpjzywm85wp7973y045"; depends=[classInt htmltools htmlwidgets leaflet mapview raster RColorBrewer rgdal rgeos sp spdep tmaptools]; };
-  tmaptools = derive2 { name="tmaptools"; version="1.2-4"; sha256="1dymngn3hrpky5v767lghijlbagmz57dqrkw57r0gy8a9k06bsx8"; depends=[classInt dichromat geosphere KernSmooth magrittr osmar raster RColorBrewer rgdal rgeos rmapshaper sp spdep XML]; };
+  tm1r = derive2 { name="tm1r"; version="1.1.0"; sha256="0vzl1w5x1gpbfkxkqhf6lafvnqzh7z4ahhd38g9a7miw27c60a5a"; depends=[httr jsonlite]; };
+  tmap = derive2 { name="tmap"; version="2.1-1"; sha256="0928f7cqwqy66hp959mpaq7idb3riz6ahhfh26aidpaqc85lwqpw"; depends=[classInt htmltools htmlwidgets leaflet mapview raster RColorBrewer sf tmaptools units viridisLite]; };
+  tmaptools = derive2 { name="tmaptools"; version="2.0-1"; sha256="0zfj2q3p4xmb7xzpiidfn20g569fscyhryzcpmvwkp98a7fg9swz"; depends=[classInt dichromat KernSmooth lwgeom magrittr raster RColorBrewer rgdal rgeos sf sp units viridisLite XML]; };
   tmbstan = derive2 { name="tmbstan"; version="1.0.0"; sha256="01x1nw0mlbpsldrd6hx2g040d9slrhk7hm2pm1v7pci3vxgbpgy9"; depends=[BH Rcpp RcppEigen rstan StanHeaders TMB]; };
   tmcn = derive2 { name="tmcn"; version="0.2-12"; sha256="1gqmq3f0plgd44056905l5jd7x9k4ls06hcp006w8skxj1rnwzb9"; depends=[]; };
   tmg = derive2 { name="tmg"; version="0.3"; sha256="0yqavibinzsdh85izzsx8b3bb9l36vzkp5a3bdwdbh410s62j68a"; depends=[Rcpp RcppEigen]; };
   tmle = derive2 { name="tmle"; version="1.3.0-1"; sha256="1y7fjj2492a70idnqwrlcdpz2bqphdxbaz96yjxnkfhx940y26b5"; depends=[SuperLearner]; };
   tmle_npvi = derive2 { name="tmle.npvi"; version="0.10.0"; sha256="00jav1ql3lv18wh9msxnjvz36z2ds44fdi6lrp1pfphh1in4vdcl"; depends=[geometry MASS Matrix R_methodsS3 R_oo R_utils]; };
-  tmlenet = derive2 { name="tmlenet"; version="0.1.0"; sha256="1pg9w7yci9j0m1cxi0nwdpp6jwap0b7ql4xkh25kjbq3w5r8w8pr"; depends=[assertthat data_table Matrix R6 Rcpp simcausal speedglm stringr]; };
   tmod = derive2 { name="tmod"; version="0.36"; sha256="054kg3rwcmrn1y1x1ba8wflb6m76nmf69g4yj3x1vw0qjjs421nh"; depends=[beeswarm plotwidgets tagcloud XML]; };
   tmpm = derive2 { name="tmpm"; version="1.0.3"; sha256="1fqk39zyc07gh0ygi7pfljlnj6ih37jsb7bcxm05zcd4796wil8j"; depends=[reshape2]; };
+  tmvmixnorm = derive2 { name="tmvmixnorm"; version="1.0.2"; sha256="04bjdlrz82v9skirap2fmngi2sv9xakkgmkgpwdv3qshszvx3wz4"; depends=[]; };
   tmvnsim = derive2 { name="tmvnsim"; version="1.0-2"; sha256="03xsvsg9bqvgl98ywid3h91mmlhax5s6wvmypp3hq91vmc5kvxlp"; depends=[]; };
   tmvtnorm = derive2 { name="tmvtnorm"; version="1.4-10"; sha256="1w3kmpx25l7rb80vpclqq4pbbv12qgysyqxjq3lp55l9nklkb7qs"; depends=[gmm Matrix mvtnorm]; };
   tnam = derive2 { name="tnam"; version="1.6.5"; sha256="0jbwnsnn6875yprmh6y2i0bvr875hfsg7wfsj6ydmjpr5cpqqk56"; depends=[igraph lme4 network Rcpp sna vegan xergm_common]; };
   tnet = derive2 { name="tnet"; version="3.0.14"; sha256="05cc6jrkjbwxzmgzq30h63xzhlgq8f0l3wx2q54vrv0wpvlvfphn"; depends=[igraph survival]; };
   toOrdinal = derive2 { name="toOrdinal"; version="1.0-0.0"; sha256="1y46rcm6v2c5n71hdf5rgsgvy913wiazmml60mlxqb70dvz42649"; depends=[crayon testthat]; };
-  toaster = derive2 { name="toaster"; version="0.5.5"; sha256="0ga4l3zp422scrgvz701rjznn013vhsbp4gh7v1inqp7kpxafky9"; depends=[foreach GGally ggmap ggplot2 ggthemes memoise network plyr RColorBrewer reshape2 RODBC scales slam wordcloud]; };
-  togglr = derive2 { name="togglr"; version="0.1.3"; sha256="033d4mcl2w7nbjmaa5bc28skd63x34k4k4ib94nf11iwdj7bipkw"; depends=[assertthat dplyr getPass glue httr jsonlite keyring lubridate magrittr prettyunits purrr rstudioapi]; };
+  togglr = derive2 { name="togglr"; version="0.1.33"; sha256="105c9vxa67bqccj31ksk5myfd0v7v0wbz6qqjhxqndlg7v6ggfzc"; depends=[assertthat dplyr getPass glue httr jsonlite keyring lubridate magrittr parsedate prettyunits purrr rstudioapi]; };
   tokenizers = derive2 { name="tokenizers"; version="0.2.1"; sha256="006xf1vdrmp9skhpss9ldhmk4cwqk512cjp1pxm2gxfybpf7qq98"; depends=[Rcpp SnowballC stringi]; };
   tolBasis = derive2 { name="tolBasis"; version="1.0"; sha256="0g4jdwklx92dffrz38kpm1sjzmvhdqzv6mj6hslsjii6sawiyibh"; depends=[lubridate polynom]; };
   tolerance = derive2 { name="tolerance"; version="1.3.0"; sha256="17qh4ad1f3fbcpwlxxqh8qr9bnwjcl4yxk0l3fkbr6b2l4rc5p86"; depends=[rgl]; };
@@ -12132,9 +12668,11 @@ in with self; {
   topmodel = derive2 { name="topmodel"; version="0.7.3"; sha256="15w9id90d6l0i0ji3ln3sxnpispb6pgabk4waysqn0nh6y4lfdgb"; depends=[]; };
   topologyGSA = derive2 { name="topologyGSA"; version="1.4.6"; sha256="0vas7qab5a86jb277ql63qjvfvx7iqqbcrwky7iyr0s8p8p794ia"; depends=[fields graph gRbase qpgraph]; };
   topsis = derive2 { name="topsis"; version="1.0"; sha256="056cgi684qy2chh1rvhgkxwhfv9nnfd7dfzc05m24gy2wyypgxj3"; depends=[]; };
+  tosca = derive2 { name="tosca"; version="0.1-2"; sha256="0zr0q0l4ic0hmmahgzm4hzjqzy0vxb31xsgmvqnvi8kya2bb68sh"; depends=[data_table htmltools lda lubridate RColorBrewer stringr tm WikipediR]; };
   tosls = derive2 { name="tosls"; version="1.0"; sha256="03nqwahap504yvcksvxdhykplbzmf5wdwgpzm7svn8bymdc472v2"; depends=[Formula]; };
-  totalcensus = derive2 { name="totalcensus"; version="0.3.0"; sha256="0i7srsfhskfcq7fdc3sq2rq2p6x508pwgbig86l92zki3ljm7qgs"; depends=[data_table magrittr purrr stringr]; };
-  touch = derive2 { name="touch"; version="0.1-3"; sha256="1zzc4h6y0xmr3p7jl0vlvn4yswxz5akgvz8laxgmjgqzk926g9jl"; depends=[stringr]; };
+  totalcensus = derive2 { name="totalcensus"; version="0.5.0"; sha256="0qmx1vmkvywkdl837vvyx8wl2ldab80m9gks2dfcqfancl8ijkm8"; depends=[data_table magrittr purrr stringr]; };
+  touch = derive2 { name="touch"; version="0.1-4"; sha256="0xz3mvwhyn7wbqhbfp2klrnf89gvsncrv5y7fmk9ym3nkq7z26cg"; depends=[Rcpp]; };
+  touchard = derive2 { name="touchard"; version="1.0"; sha256="0hjki9y94kzapkik48dpdz3x5ybi1miy94mvn4klsgs54z68apsi"; depends=[MASS nleqslv numDeriv plotrix]; };
   tourr = derive2 { name="tourr"; version="0.5.5"; sha256="12293kp36kz056zd3fnsaf2gy4g8mcs79ws0vgbs7b0hx09sy9vp"; depends=[]; };
   tourrGui = derive2 { name="tourrGui"; version="0.4"; sha256="1g9928q3x9rrd9k3k84r201wss3vjd2pngvbaflk5dqh9yf75jpq"; depends=[Cairo colorspace gWidgets RGtk2 tourr]; };
   toxboot = derive2 { name="toxboot"; version="0.1.1"; sha256="0sw0mxhcq5k11swlhfpn6xk0nfsambh2yx1721zx75lya27wkmq1"; depends=[data_table tcpl]; };
@@ -12146,23 +12684,25 @@ in with self; {
   tracer = derive2 { name="tracer"; version="1.0.0"; sha256="1jdh4ljcz7d0w2y5miggqkvv397jdx7fn108hbjw93af2gnh698q"; depends=[clisymbols crayon prettycode]; };
   tracheideR = derive2 { name="tracheideR"; version="0.1.1"; sha256="1x1jwzgs2aqb3k17mm9mhfhnbwcmilhkjaz9rl40rcg84xjqdrpl"; depends=[tgram]; };
   track = derive2 { name="track"; version="1.1.9"; sha256="1d0hab7xyayyhyyrbv8nvpka1kzry4yx10fg8aqwkca3nm7n2q3c"; depends=[]; };
-  trackdem = derive2 { name="trackdem"; version="0.4.1"; sha256="0r33ph7vk5i4nl3bw4642cpy743arly9xmn3n5jk2961q80m0kq5"; depends=[MASS neuralnet png raster Rcpp RcppArmadillo SDMTools shiny]; };
-  trackeR = derive2 { name="trackeR"; version="1.0.0"; sha256="0z200jlkgcdxwss0ckbh3vqcfw56fi7pivr9vzf4rkwyf2n6v25s"; depends=[fda ggmap ggplot2 gridExtra gtable jsonlite leaflet raster RSQLite scam XML zoo]; };
-  trackr = derive2 { name="trackr"; version="0.7.5"; sha256="1achrnkqnpdjp2vr1s7xsl8fdfdyifgv5vr00b3xq9pkr4jggj6z"; depends=[CodeDepends fastdigest ggplot2 gridGraphics histry htmltools knitr lattice miniUI RJSONIO rmarkdown rsolr shiny]; };
+  trackdem = derive2 { name="trackdem"; version="0.4.2"; sha256="0isd3cs10z6sqm8sh2q577z8bhnagq9gqsvdlsv377lk1z7wd1ln"; depends=[MASS neuralnet png raster Rcpp RcppArmadillo SDMTools shiny]; };
+  trackeR = derive2 { name="trackeR"; version="1.2.0"; sha256="07kfnla6dq1x62k43nl2d2s2bn1m1djzqzhks09f8fjz7vcbjgsy"; depends=[fda foreach ggmap ggplot2 ggridges gridExtra gtable jsonlite leaflet raster RSQLite scam sp xml2 zoo]; };
+  trackr = derive2 { name="trackr"; version="0.10.2"; sha256="0nl4f476a6rq5hhbsh8snhgaspalrx7r74n6i7z51p39z8rdfsik"; depends=[CodeDepends fastdigest ggplot2 gridGraphics histry htmltools lattice miniUI RJSONIO rlang rmarkdown roprov rsolr shiny]; };
   tractor_base = derive2 { name="tractor.base"; version="3.2.2"; sha256="1pbh9hand7h68vxap2qis3a7zs5qkrj2wxk8flqyvhx50p98wigv"; depends=[ore reportr shades]; };
   trade = derive2 { name="trade"; version="0.5.3"; sha256="0v0yw261daag0hw3sc7dh2bpm8sd3r46xbcbcbxv7qb59rad756w"; depends=[antitrust]; };
+  trafo = derive2 { name="trafo"; version="1.0.0"; sha256="03s341v264yvcyfli4smrsgak15123bilm8a944kg64s0z3hg79y"; depends=[FNN lmtest moments pryr]; };
   traitr = derive2 { name="traitr"; version="0.14"; sha256="1pkc8wcq55229wkwb54hg9ndbhlxziv51n8880z6yq73zac1hbmf"; depends=[digest gWidgets proto]; };
   traits = derive2 { name="traits"; version="0.3.0"; sha256="155y8j69214xxi1bfk07k30zlpm3q6fmz7ydhnkvw0kv4l0i5pc5"; depends=[crul data_table hoardr httr jsonlite readr rvest taxize tibble xml2]; };
   traj = derive2 { name="traj"; version="1.2"; sha256="0mq6xdbxjqjivxyy7cwaghwmnmb5pccrah44nmalssc6qfrgys4n"; depends=[cluster GPArotation NbClust pastecs psych]; };
-  trajectories = derive2 { name="trajectories"; version="0.1-4"; sha256="0vwfbx5s8ywasxwv8cld4s6r96vlyknxipp49rsfpqn94nawhwnx"; depends=[lattice sp spacetime]; };
+  trajectories = derive2 { name="trajectories"; version="0.2-0"; sha256="0zd2a57pfc6aamh6d3n79sxlsvdwzrnq77xsfjyil4kvgh9ajd9c"; depends=[lattice sp spacetime]; };
   trajr = derive2 { name="trajr"; version="1.1.0"; sha256="1wfncd3ays8wqz8hhwz46diyac49ivz31qm1rvy1gkbw71icmnd7"; depends=[plotrix signal]; };
-  tram = derive2 { name="tram"; version="0.2-2"; sha256="1lyk2srbj5axh2h8y54sxn5l36sa9q9nkkb7vvbhms5dinld1z6j"; depends=[basefun Formula mlt multcomp sandwich survival variables]; };
+  tram = derive2 { name="tram"; version="0.2-3"; sha256="1bbz9a57pmdalb9xmhawy9wjswcvr7lcb390plrs43lka2j55j6n"; depends=[basefun Formula mlt multcomp sandwich survival variables]; };
   transcribeR = derive2 { name="transcribeR"; version="0.0.0"; sha256="0y2kxg2da71i962fhsjxsr2ic3b31fmffhj3gg97b0nykfpcviib"; depends=[httr]; };
   translate = derive2 { name="translate"; version="0.1.2"; sha256="1w0xrg1xxwfdanlammmixf06hwq700ssbjlc3cfigl50p87dbc5x"; depends=[functional lisp RCurl RJSONIO]; };
   translateR = derive2 { name="translateR"; version="1.0"; sha256="11kh9hjpsj5rfmzybnh345n1gzb0pdksrjp04nzlv948yc0mg5gm"; depends=[httr RCurl RJSONIO textcat]; };
   translation_ko = derive2 { name="translation.ko"; version="0.0.1.5.2"; sha256="1w5xibg4znhd39f3i0vsqckp6iia43nblqxnzgj0ny6s7zmdq1wd"; depends=[]; };
   transport = derive2 { name="transport"; version="0.9-4"; sha256="0ham0cla4qwfd6fqyckpdl2n2gm3qnl7ry1xi9kjvbajlcc0xwi2"; depends=[Rcpp]; };
   trapezoid = derive2 { name="trapezoid"; version="2.0-0"; sha256="0f6rwmnn61bj97xxdgbydi94jizv1dbq0qycl60jb4dsxvif8l3n"; depends=[]; };
+  trawl = derive2 { name="trawl"; version="0.2.1"; sha256="1ns4nk8zdnl2z9clc2q38sbb1ijkj86lcifxq7d111mcwsmpb6fi"; depends=[DEoptim MASS rootSolve Runuran squash TSA]; };
   treatSens = derive2 { name="treatSens"; version="2.1.3"; sha256="159dpd4wg0i4cidg40lad665sm3j4qch8d1y3k9chwggbhcad5jn"; depends=[BH dbarts lme4 mvtnorm nlme Rcpp RcppEigen]; };
   tree = derive2 { name="tree"; version="1.0-39"; sha256="0q2dnl1hvyaw76lkfq0i9d92z68r29ssb3a9j8jknnzx896x055x"; depends=[]; };
   tree_bins = derive2 { name="tree.bins"; version="0.1.1"; sha256="1flrkhdqimsn8dxn97xzl1fykx916i1dis1bfany44yk0cjmd85g"; depends=[data_table dplyr rpart rpart_utils]; };
@@ -12173,27 +12713,29 @@ in with self; {
   treecm = derive2 { name="treecm"; version="1.2.2"; sha256="0vrawg4vvy270dn20gb2k99xi4q89l4mjz0mm7ikpz8wxqypzq2l"; depends=[plyr]; };
   treedater = derive2 { name="treedater"; version="0.2.0"; sha256="18y1nbpinpcnczyn0kwlcnhbmnxv7814ms6l5qfikdqrxd2gx3si"; depends=[ape limSolve]; };
   treelet = derive2 { name="treelet"; version="1.1"; sha256="0k3qhxjg7ws6jfhcvvv9jmy26v2wzi4ghnxnwpjm8nh7b90lbysd"; depends=[]; };
-  treeman = derive2 { name="treeman"; version="1.1.2"; sha256="0imwg4wi85gjhbhpym5gs0my8kacx28l74m5xbfwqdi4gxpz3kkc"; depends=[ape bigmemory plyr RJSONIO stringr]; };
+  treeman = derive2 { name="treeman"; version="1.1.3"; sha256="0xvazizpi3dbdgjd48ff4kg4dhsi2yzbnkk43pgyi21zii673yyn"; depends=[ape bigmemory plyr RJSONIO stringr]; };
   treemap = derive2 { name="treemap"; version="2.4-2"; sha256="15bdgkdwryb55v82b3hpcx4ykfg5z7zf10h0wwknf6kl1kn34v90"; depends=[colorspace data_table ggplot2 gridBase igraph RColorBrewer shiny]; };
-  treemapify = derive2 { name="treemapify"; version="2.5.0"; sha256="0s8qrm2ifbpm31zwyc2f2f6jyc04r06vy6vgq3k99aq67mz6krdq"; depends=[ggfittext ggplot2]; };
+  treemapify = derive2 { name="treemapify"; version="2.5.2"; sha256="0iraqkvlk97xk8iv23nvcb144h195l3kbis3lm4r58prlgffyac3"; depends=[ggfittext ggplot2]; };
   treeperm = derive2 { name="treeperm"; version="1.6"; sha256="0mz7p9khrsq4dbkijymfvlwr01y4fvs0x6si4x5xid16s2zsnmm4"; depends=[]; };
   treeplyr = derive2 { name="treeplyr"; version="0.1.4"; sha256="140j1cd8a34fww8bi6b7mi3c7c1nik5sajk085nyfmjq7lxds0cy"; depends=[ape dplyr geiger lazyeval phytools Rcpp]; };
   treespace = derive2 { name="treespace"; version="1.1.3"; sha256="0s3hmmjx2hf8l0piwz6mddd80hb5jsljnpzpakighqj9iiah5jjv"; depends=[ade4 adegenet adegraphics adephylo ape combinat distory fields htmlwidgets MASS phangorn phytools Rcpp rgl RLumShiny scatterD3 shiny shinyBS]; };
   treethresh = derive2 { name="treethresh"; version="0.1-11"; sha256="1fksyn9mycr6dpw1yh5b3fa7fk7ndz7q39174daplm55jbrz1dr5"; depends=[EbayesThresh wavethresh]; };
   trekfont = derive2 { name="trekfont"; version="0.9.2"; sha256="1njmllp6i10rafjq5c9z1qp3bmy8zr3nxv9cjw75w5fnrh50rlzh"; depends=[]; };
-  trelliscope = derive2 { name="trelliscope"; version="0.9.8"; sha256="1581ss5c3f7mnv6s3p9f8kfwnks0l80kxwpxv9mq61w3lf9fksm2"; depends=[base64enc curl data_table datadr digest DistributionUtils ggplot2 hexbin htmltools htmlwidgets jpeg jsonlite lattice png rsconnect shiny]; };
+  trelliscopejs = derive2 { name="trelliscopejs"; version="0.1.14"; sha256="1yjgn0a7jdfp1l3b1l8ss4pl23z9j4w27ny73mgmdbji02xqklyv"; depends=[autocogs base64enc digest DistributionUtils dplyr ggplot2 gtable htmltools htmlwidgets jsonlite knitr progress purrr rlang tidyr webshot]; };
   trelloR = derive2 { name="trelloR"; version="0.1.0"; sha256="0d549yw9pfxs8a3q716z08fzg68bkm5l09cv5iqqkm4gyasrxsf4"; depends=[dplyr httr jsonlite]; };
-  trend = derive2 { name="trend"; version="1.1.0"; sha256="06yifqbsvxbmk5gld4z2nnyhf59v8ks5xjwacmb25mv9r6bn388b"; depends=[extraDistr]; };
-  trialr = derive2 { name="trialr"; version="0.0.1"; sha256="0v274a4w9pamlp9y7xs8hw783ib7z3p19gx94dciyvgm2wj9h7di"; depends=[BH gtools Rcpp RcppEigen rstan rstantools StanHeaders]; };
+  trend = derive2 { name="trend"; version="1.1.1"; sha256="1bd567n15k2vpmgbx02584k5kglrc58mlb5kgd07wdss3knpa48q"; depends=[extraDistr]; };
+  trialr = derive2 { name="trialr"; version="0.0.4"; sha256="1vav3kvmwl7lf2hp89i0vh6a8zc294m0ch24mw0a0ml6mvw9iwpx"; depends=[BH dplyr ggplot2 gtools loo magrittr Rcpp RcppEigen rstan rstantools StanHeaders stringr tidyr]; };
   triangle = derive2 { name="triangle"; version="0.11"; sha256="0983bvywbyl0sms29j1hby2qy6p984vy4r0q1awh1f8gr01bbk5b"; depends=[]; };
   triangulation = derive2 { name="triangulation"; version="0.5.0"; sha256="1zp09g0s0qpqgz2k6jx32pswh2zqyyd0b62lf1dx1p46m28dafkn"; depends=[]; };
-  tribe = derive2 { name="tribe"; version="0.1.6"; sha256="0sx6hyfyg8x0vxq4l4gvv5kb8afrbjp3qk3s48l85vf5v1chwnhf"; depends=[bazar dplyr lazyeval magrittr rlist rstudioapi]; };
-  tricolore = derive2 { name="tricolore"; version="1.0.3"; sha256="0lycsb29havx911q0fv4r184nr81w1c7yvy4sn6jqg35g2p1qqdv"; depends=[assertthat dplyr ggplot2 ggtern shiny]; };
+  tribe = derive2 { name="tribe"; version="0.1.7"; sha256="1k12yzicf3p5wpgzpsv4kk5xzrdfx712z67kj9xmcr1mbs8l5skb"; depends=[bazar dplyr lazyeval magrittr rlist rstudioapi]; };
+  tricolore = derive2 { name="tricolore"; version="1.2.0"; sha256="0mv72lh5z8drdn96nb39dz9gnzia6vm6vbl8z6ldmd952x727y0a"; depends=[assertthat dplyr ggplot2 ggtern shiny]; };
   triebeard = derive2 { name="triebeard"; version="0.3.0"; sha256="1hqyz57gph02c9fdc07lxz113bbklif3g18sw8jan6pakhhdc7dz"; depends=[Rcpp]; };
   trifield = derive2 { name="trifield"; version="1.1"; sha256="0xk48fkd5xa3mfn3pwdya0ihpkwnh20sgj3rc7fmzjil47kqscvy"; depends=[]; };
+  trigpoints = derive2 { name="trigpoints"; version="1.0.0"; sha256="1hckjh2gb0fvd2c8x6mj0idpk3im7b831y7mbli1hqhry6qqdw15"; depends=[sf tibble]; };
   trimTrees = derive2 { name="trimTrees"; version="1.2"; sha256="0v75xf5186dy76332x4w7vdwcz7zpqga8mxrb5all2miq2v45fi8"; depends=[mlbench randomForest]; };
-  trimcluster = derive2 { name="trimcluster"; version="0.1-2"; sha256="0lsgbg93hm0w1rdb813ry0ks2l0jfpyqzqkf3h3bj6fch0avcbv2"; depends=[]; };
+  trimcluster = derive2 { name="trimcluster"; version="0.1-2.1"; sha256="0013bpyq6mkvjn38qsmwnsxfiwxgwngnqxycxvgpgmiadhm8fjmn"; depends=[]; };
   trimr = derive2 { name="trimr"; version="1.0.1"; sha256="0gcn18nwxmax9c35is0nldyh74cw8rg3gj60cixzs9qjnpb9xx3d"; depends=[]; };
+  trinROC = derive2 { name="trinROC"; version="0.2"; sha256="1hdqf845sb44wrzjb0lk1n24zcf9psv7ck6cwvpjvlwscrqbfd0p"; depends=[ggplot2 gridExtra rgl]; };
   trioGxE = derive2 { name="trioGxE"; version="0.1-1"; sha256="1ra86l3i7fhb6nsy8izixyvm6z23shv7fcjmnnpil54995j15ax4"; depends=[gtools mgcv msm]; };
   trip = derive2 { name="trip"; version="1.5.0"; sha256="1qdq3hbqqaa0cmb47ssg3pr3jksni7g4xsc7bsj6wwdw62d9wzf6"; depends=[maptools MASS raster sp spatstat]; };
   tripEstimation = derive2 { name="tripEstimation"; version="0.0-44"; sha256="1ylpyzlqr6l5haxq4icnlxw6vgvc2lsfz5sm2wqqm4m6h3p0i6s6"; depends=[lattice mgcv rgdal sp zoo]; };
@@ -12201,24 +12743,24 @@ in with self; {
   triversity = derive2 { name="triversity"; version="1.0"; sha256="1bar2bpy8jvj91jmzzdwy6rlvirsbxrzqnx4r825irqhc69gc53r"; depends=[data_tree Matrix]; };
   tropAlgebra = derive2 { name="tropAlgebra"; version="0.1.1"; sha256="1idvhxhw2f6z8iq0nfdj6jmzy8913vid84rvln6rx2dkzw3s9wnl"; depends=[]; };
   tropicalSparse = derive2 { name="tropicalSparse"; version="0.1.0"; sha256="1ay6i3pzz5lpvznxqln31mijp86p6z0df7rvp0gm4lxvn294m7f8"; depends=[]; };
-  tropr = derive2 { name="tropr"; version="0.1.2"; sha256="1nm97sqmj4nfy7h8z58gmd9ipyrkw6skh2wx2g3ivm9pn3m50bwl"; depends=[digest httr magrittr rvest stringr xml2]; };
   trotter = derive2 { name="trotter"; version="0.6"; sha256="0i8r2f2klkkfnjm7jhvga3gx6m7r97pd73d88004jzlm9ficspgy"; depends=[]; };
-  trtf = derive2 { name="trtf"; version="0.3-2"; sha256="16nsrg68vn9p4s5al7fg6fg02cr3ccswzmhig7k4irprsnhdy4fr"; depends=[Formula libcoin mlt partykit sandwich variables]; };
+  trread = derive2 { name="trread"; version="0.2.5"; sha256="0rygk71qrp9k3hw3fq80q5kf9fwwfpwlgl268ij2x84n399g16p2"; depends=[assertthat dplyr here htmltools httr magrittr readr scales stringr tibble]; };
+  trtf = derive2 { name="trtf"; version="0.3-3"; sha256="1jvbh4c1s8nd4yf04i2rmrzx6rw92imdyp41wl40097133x9a0fb"; depends=[Formula libcoin mlt partykit sandwich variables]; };
   trueskill = derive2 { name="trueskill"; version="0.1"; sha256="0mqvm64fcsxjlh789lqdk6l28q31yhh6jjirwjlgbpxxb90c5107"; depends=[]; };
   truncSP = derive2 { name="truncSP"; version="1.2.2"; sha256="1hdi518j3sg9273g01l1jqlmqya3ppim82ma7zakwqpmsjmzw18q"; depends=[boot truncreg]; };
   truncdist = derive2 { name="truncdist"; version="1.0-2"; sha256="02ihw4ixhadwr3sqm6r264i8vpcaz8pn69vkzabd8fwqvn5vcj5q"; depends=[evd]; };
   truncgof = derive2 { name="truncgof"; version="0.6-0"; sha256="0b499i9zjwvva5jfl9fj02jjrgy8myxqfjwa0cjg0jrpgxczgwg8"; depends=[MASS]; };
   truncnorm = derive2 { name="truncnorm"; version="1.0-8"; sha256="0zn88wdd58223kibk085rhsikl4yhlrwiyq109hzjg06hy6lwmj9"; depends=[]; };
-  truncreg = derive2 { name="truncreg"; version="0.2-4"; sha256="1rmf1v2khsx82yzyyk51k7fbnbchf21lj9yqrays1z2mx3p1l1fc"; depends=[maxLik]; };
+  truncreg = derive2 { name="truncreg"; version="0.2-5"; sha256="1scbjh5k1b8cjjavax08grlxdfs75s63dss0ifpz4d0axc4nm3iy"; depends=[maxLik]; };
   trust = derive2 { name="trust"; version="0.1-7"; sha256="013gmiqb6frzsl6fsb5pqfdapwdxas0llg954hlcvgki9al5mlg3"; depends=[]; };
   trustOptim = derive2 { name="trustOptim"; version="0.8.6.2"; sha256="1nsl8jd6cna52b5dd92jw3sh84jqpg7gazskn7166bcjbph19bf7"; depends=[Matrix Rcpp RcppEigen]; };
   tryCatchLog = derive2 { name="tryCatchLog"; version="1.0.2"; sha256="0452xcfv98d2nfdhi9l2033s381lsa1kjghmrk05d3kc88d22np7"; depends=[futile_logger]; };
-  tsBSS = derive2 { name="tsBSS"; version="0.5.1"; sha256="0hysb132cjymlqg5bcsqdvii7kyx3rh07c4bsds636j1cypi86kd"; depends=[boot forecast ICtest JADE Rcpp RcppArmadillo]; };
+  tsBSS = derive2 { name="tsBSS"; version="0.5.2"; sha256="00brzy0dkvdwrsf5jlpyp6ggwc2wkmdkb3l6h8fx1i3lmhnaqhkg"; depends=[boot forecast ICtest JADE Rcpp RcppArmadillo]; };
   tsDyn = derive2 { name="tsDyn"; version="0.9-48"; sha256="01yqfd156ffnxy9wyd3s9vkpkc9n0davs1cq606sbpvvkmphnws3"; depends=[foreach forecast MASS Matrix mgcv mnormt nnet tseries tseriesChaos urca vars]; };
   tsModel = derive2 { name="tsModel"; version="0.6"; sha256="0mkmhzj4g38ngzfcfx0zsiqpxs2qpw82kgmm1b8gl671s4rz00zs"; depends=[]; };
   tsPI = derive2 { name="tsPI"; version="1.0.2"; sha256="0lw4s7gxn4xldsk5f3dz27bb9jywa14195703b5q1497h9j966gk"; depends=[KFAS]; };
   tsSelect = derive2 { name="tsSelect"; version="0.1.8"; sha256="0ysijzhhwaj5n7h50jacshnla6d0h61q0f6lj19ic0lwvlz4yazy"; depends=[forecast]; };
-  tsallisqexp = derive2 { name="tsallisqexp"; version="0.9-2"; sha256="19535zlr6gjg45f8z6hm98pamgn20z19m8qb63997vbj4azsrjfv"; depends=[]; };
+  tsallisqexp = derive2 { name="tsallisqexp"; version="0.9-3"; sha256="0mzqplsj2w4a7jnav43afyk8ymy6p444j7km6kc8c2g4aifpgxcb"; depends=[]; };
   tsbox = derive2 { name="tsbox"; version="0.0.3"; sha256="1dcfp0lg6fvhhkspgk9a41crnfq7gx50ll4a4a0qil795349srnj"; depends=[anytime data_table]; };
   tsbridge = derive2 { name="tsbridge"; version="1.1"; sha256="0mry3ia54cdfydpzm8asrq1ldj70gnpb5dqzj51w0jiyps2zlw6f"; depends=[mvtnorm tsbugs]; };
   tsbugs = derive2 { name="tsbugs"; version="1.2"; sha256="130v4x6cfy7ddvhijsnvipm4ycrispkj1j0z5f326yb4v5lrk91x"; depends=[]; };
@@ -12235,17 +12777,18 @@ in with self; {
   tsfknn = derive2 { name="tsfknn"; version="0.1.0"; sha256="0gzij2fbgwavpsqmr7cp012lhii23fav4nsrbc2w9qingglcnqd1"; depends=[ggplot2]; };
   tsgui = derive2 { name="tsgui"; version="0.0.3"; sha256="16cx68gq2f63wx7mhbv0aq6pr71wfbc035kjbjjsfrbagaq4ib13"; depends=[RandomFieldsUtils tcltk2 tkrplot]; };
   tsiR = derive2 { name="tsiR"; version="0.3.0"; sha256="1brlwsbs4rac8z6cf1q3xm1apdi4ban5hj7p3qvz2yx810gbxp1d"; depends=[ggplot2 kernlab reshape2]; };
-  tsibble = derive2 { name="tsibble"; version="0.3.0"; sha256="0rakw6fwkxlvdwzw5cj31a6dkq88jr2ffrkdwc41vasdxzf6xwrc"; depends=[dplyr lubridate pillar purrr Rcpp rlang tibble tidyr tidyselect]; };
+  tsibble = derive2 { name="tsibble"; version="0.5.3"; sha256="0i026q33zsv184rbywbmcd8m7cilg89m7ai0n1m74z6c57zs8lc0"; depends=[anytime dplyr lubridate purrr Rcpp rlang tibble tidyr tidyselect]; };
   tsintermittent = derive2 { name="tsintermittent"; version="1.9"; sha256="1mrb6yrsjwj6j40n97sgg42ddvwhjnaiq9k7ka249bbq01gf2975"; depends=[MAPA]; };
+  tsmp = derive2 { name="tsmp"; version="0.3.2"; sha256="1q1rdlx90dwk2p9s7i3246yi192pwysflphfvd20ldc0qm815sml"; depends=[audio doSNOW foreach magrittr progress]; };
   tsna = derive2 { name="tsna"; version="0.2.0"; sha256="09q01jzj1rnv2f2jf7djnq5xrkp7lvykdbf4bfswsy0f95j0asx2"; depends=[network networkDynamic statnet_common]; };
   tsne = derive2 { name="tsne"; version="0.1-3"; sha256="0s8cv2pndkddq62rzlgzgfdjp1vjv5hz5i5957sllnb97vbzbzb6"; depends=[]; };
   tsoutliers = derive2 { name="tsoutliers"; version="0.6-6"; sha256="0q4lkqasnsps8lzpiyk074nfhv29sbma080729c8l3ba1sa9pmyn"; depends=[forecast KFKSDS stsm]; };
   tspmeta = derive2 { name="tspmeta"; version="1.2"; sha256="028jbbd0pwpbjq4r6jcc1h0p7c4djcb9d2mvgzw1rmpphaxjvrkd"; depends=[BBmisc checkmate fpc ggplot2 MASS splancs stringr TSP vegan]; };
   tsqn = derive2 { name="tsqn"; version="1.0.0"; sha256="1iv1wwa6a9824dbgfk5a609szppc3a8j250z74hb8csjvwwx9qq9"; depends=[fracdiff MASS robustbase]; };
-  tstools = derive2 { name="tstools"; version="0.3.6.1"; sha256="066bkm4hqkbhslk3f3vk9w4hzv3smg718vpav04byrvlcdiibv0c"; depends=[data_table jsonlite xts zoo]; };
+  tstools = derive2 { name="tstools"; version="0.3.8"; sha256="0daxrp91hxc367hlzla0s7x5dddnx462239jcq0ickx6awkk753g"; depends=[data_table jsonlite xts zoo]; };
   tswge = derive2 { name="tswge"; version="1.0.0"; sha256="0wj0kyb1dcwfn8wjp7skgcflc48cr4va0i0jg8x970658if7z6fz"; depends=[astsa MASS PolynomF signal waveslim]; };
   tsxtreme = derive2 { name="tsxtreme"; version="0.3.1"; sha256="0cfska93ws5x11pslcdhf5rrshxzh6ddlgmfkl9zlci2rqdbwz35"; depends=[evd MASS mvtnorm]; };
-  ttScreening = derive2 { name="ttScreening"; version="1.5"; sha256="0qn8lkvgvqpmm368fwpqkm09yaj9mw42mjlikyiwpv2wrgbpmg9n"; depends=[corpcor limma MASS matrixStats sva]; };
+  ttScreening = derive2 { name="ttScreening"; version="1.6"; sha256="1i8c9l3sdkzl99zxxyfqm84vkh6wjdh3a32l5q8ikf74g9dhxkf4"; depends=[corpcor limma MASS matrixStats simsalapar sva]; };
   ttbbeer = derive2 { name="ttbbeer"; version="1.1.0"; sha256="1azffcizm3460kxvrxxkilc6qxspyi247x8drrw5ywfichwhmdhc"; depends=[]; };
   tth = derive2 { name="tth"; version="4.3-2-1"; sha256="19rvmyprl1nk9mmngk6dax8rnli10msfvm3vzp86pbdjxnsh3hjc"; depends=[]; };
   tttplot = derive2 { name="tttplot"; version="1.1.1"; sha256="0rmgp1888y07w0h8kwq1azpr6bysjq4pyjf6ygpra75jj4563wx9"; depends=[]; };
@@ -12254,71 +12797,76 @@ in with self; {
   tuber = derive2 { name="tuber"; version="0.9.7"; sha256="0ypfzxk0cyb81y61xxj4bhr5v9afnd7z9wi09xippjv8djbm78yb"; depends=[dplyr httr jsonlite plyr purrr]; };
   tubern = derive2 { name="tubern"; version="0.1.0"; sha256="0wpn4aig6r1kpncrgrqra4kr0f07rdq7z4p2k0h28f7kww6l52vv"; depends=[httr jsonlite]; };
   tuckerR_mmgg = derive2 { name="tuckerR.mmgg"; version="1.5.1"; sha256="0lrylh0np0kbl4xx3gmlvid0g11fh0ad39wdwbz6hrmf5pzsjdjq"; depends=[]; };
-  tufte = derive2 { name="tufte"; version="0.3"; sha256="1fpv9ilf8ajynz38ny0abfnq20xzpgwbxaxj8ijwy8viki893bd0"; depends=[htmltools knitr rmarkdown xfun]; };
+  tufte = derive2 { name="tufte"; version="0.4"; sha256="0vp7rsb8qa21mkcfxy57sgb26nm4s492r0069rmn8fcpazcsbzqb"; depends=[htmltools knitr rmarkdown xfun]; };
   tufterhandout = derive2 { name="tufterhandout"; version="1.2.1"; sha256="04fvvbx69a28nk7i4wz5ynamz1yvsa2ibz542r1xaq1ikk0ywqbw"; depends=[knitr rmarkdown]; };
   tukeytrend = derive2 { name="tukeytrend"; version="0.6"; sha256="0lsxfpkim4fkrm2lrjhn3w55c0p694vbkal3mjqk6vnmnycg9d71"; depends=[lme4 Matrix mgcv multcomp nlme pbkrtest]; };
   tumblR = derive2 { name="tumblR"; version="1.1"; sha256="0gl6q6rff9bp21gvi3bz8kmwbhimxqrv1mmzwshl1ys9r7d4dvps"; depends=[httr RCurl RJSONIO stringr]; };
   tumgr = derive2 { name="tumgr"; version="0.0.4"; sha256="1ylfmrsg177g75l2scjpgw6v4dpz62r7cy89pql9zd5zqy167xqj"; depends=[minpack_lm]; };
-  tuneR = derive2 { name="tuneR"; version="1.3.2"; sha256="1xk66rrahfvvbjzpx2mkbmlmyj0l3vidd8kz24f72wh56gbdgbsa"; depends=[signal]; };
-  tuneRanger = derive2 { name="tuneRanger"; version="0.2"; sha256="0dk8nnh3sp0mlfr4vfc33r83a5kdgdi3sbqs0v4311i6dv72c1hn"; depends=[BBmisc DiceKriging lhs lubridate mlr mlrMBO ParamHelpers ranger smoof]; };
+  tuneR = derive2 { name="tuneR"; version="1.3.3"; sha256="0av978m4h2iqazyfq6n2cgkh4wpllihh7s29lah2nb8ngc0w5hxx"; depends=[signal]; };
+  tuneRanger = derive2 { name="tuneRanger"; version="0.3"; sha256="1hj77fy522lr68h3ypsms96pkrahhn0sp50cggmnf60qdqcgdbjq"; depends=[BBmisc DiceKriging lhs lubridate mlr mlrMBO ParamHelpers ranger smoof]; };
   tuple = derive2 { name="tuple"; version="0.4-02"; sha256="0fm8fsdfiwknjpc20ivi5m5b19r9scdxhzij70l8qi3ixw1f0rnk"; depends=[]; };
   turboEM = derive2 { name="turboEM"; version="2018.1"; sha256="1xjpm2dxn48nflqriplxxbrjxv0spix6v7cp76gyh4kj8ylnbna6"; depends=[doParallel foreach iterators numDeriv quantreg]; };
   turfR = derive2 { name="turfR"; version="0.8-7"; sha256="007jmkppfv1x4zzvvd65fhg5k15ybjhsya2zfjgwm77wm34y81ca"; depends=[dplyr]; };
   turner = derive2 { name="turner"; version="0.1.7"; sha256="1xckb750hbfmzhvabj0lzrsscib7g187b44ag831z58zvawwh772"; depends=[tester]; };
   tutorial = derive2 { name="tutorial"; version="0.4.3"; sha256="0sxdlpw0w4azlaxdlk36ycrric6pbj2zi4nyv26pgsp0cr1hrx6r"; depends=[base64enc knitr markdown rjson]; };
   tuts = derive2 { name="tuts"; version="0.1.1"; sha256="0mwc6lsnhxww041wh3020wz7w812asp1d6djv4n9pl7jil0kvkry"; depends=[coda doParallel foreach lomb mcmcplots rjags truncnorm]; };
-  tvR = derive2 { name="tvR"; version="0.2.0"; sha256="06h90r0mlflsbbvg09s1ap8b16yfk285ma8rzzdi7cmkfdc5hlyx"; depends=[filling Matrix Rcpp RcppArmadillo Rdpack]; };
+  tvR = derive2 { name="tvR"; version="0.3.0"; sha256="1pg13bvndqyyi2yl1bg3bkdh2xq060ihl25j3a91nahwasy3225m"; depends=[Matrix Rcpp RcppArmadillo Rdpack]; };
   tvReg = derive2 { name="tvReg"; version="0.3.0"; sha256="16z032j5wxyvgc29m8sgh4wcvsdam6a0srjwym52885rdslbkmjy"; depends=[bvarsv MASS Matrix systemfit vars]; };
   tvd = derive2 { name="tvd"; version="0.1.0"; sha256="07al7gpm81a16q5nppsyc5rhv6zzkcvw72isx955b1q189v073aw"; depends=[Rcpp]; };
   tvm = derive2 { name="tvm"; version="0.3.0"; sha256="1iv0qrks1zdiq8jaqr1h46snq8wc3g3q017hxc8zc6fqnsz1whf6"; depends=[ggplot2 reshape2]; };
   twang = derive2 { name="twang"; version="1.5"; sha256="1sp1vb6l0mwpy9b9my5d3spc0q0zs7xg4dkmi4cl7hy7m9xy1dbk"; depends=[gbm lattice latticeExtra survey xtable]; };
   tweedie = derive2 { name="tweedie"; version="2.3.2"; sha256="10fv998qjxsyx0h94fi0xbh6xbf24nwgh254n9zfnmix9vk2cqls"; depends=[]; };
-  tweenr = derive2 { name="tweenr"; version="0.1.5"; sha256="06h0vhxlljmvxg4a62sqrq53lpbvl5w19dqcpyw1jqvrb5agidnq"; depends=[Rcpp]; };
-  tweet2r = derive2 { name="tweet2r"; version="1.0"; sha256="0v7xshk389k3aws72ww9kqc2ycw6l6q9xmhps47g3bdl64jy8bay"; depends=[ggmap ggplot2 maptools plyr rgdal ROAuth RPostgreSQL RSQLite sp spacetime spatstat splancs streamR]; };
+  tweenr = derive2 { name="tweenr"; version="1.0.0"; sha256="0r98ln17fdzdda66rsj6lqwi843anl6m7c287kbzc4gkj931cifh"; depends=[farver magrittr Rcpp rlang]; };
+  tweet2r = derive2 { name="tweet2r"; version="1.1"; sha256="1ivzc05af3fbdxn99lcphm74qs64lz8577zzi6r52r9xjpsqpqzi"; depends=[ggmap ggplot2 maptools plyr rgdal ROAuth RPostgreSQL RSQLite sp spacetime spatstat splancs streamR]; };
   twfy = derive2 { name="twfy"; version="0.1.0"; sha256="14xxl9y8iagnn5jd06k6jyy4wk7crm64svz8h0zmzcvg47k8bwc7"; depends=[httr jsonlite]; };
   twiddler = derive2 { name="twiddler"; version="0.5-0"; sha256="0r16nfk2afcw7w0j0n3g0sjs07dnafrp88abwcqg3jyvldp3kxnx"; depends=[]; };
   twilio = derive2 { name="twilio"; version="0.1.0"; sha256="0b70vcc2bd5jpd2d82i2k828q90viah0b9abz2r627bbyxivpcnd"; depends=[httr jsonlite lubridate magrittr purrr]; };
   twitteR = derive2 { name="twitteR"; version="1.1.9"; sha256="1hh055aqb8iddk9bdqw82r3df9rwjqsg5a0d2i0rs1bry8z4kzbr"; depends=[bit64 DBI httr rjson]; };
+  twl = derive2 { name="twl"; version="1.0"; sha256="0n2r40ddsr5zpzi92k7f0lvq78k5cmfbqzjxvr78hwq6j13dhar3"; depends=[corrplot data_table MCMCpack Rfast]; };
   twoStageGwasPower = derive2 { name="twoStageGwasPower"; version="0.99.0"; sha256="1xvy6v444v47i29aw54y29xiizkmryv8p3mjha93xr3xq9bx2mq7"; depends=[]; };
   twostageTE = derive2 { name="twostageTE"; version="1.3"; sha256="0mkxs3lmzja51zdrf5himhwcdygpj6czhdd2bydakm26kvw7znwr"; depends=[isotone]; };
+  twoway = derive2 { name="twoway"; version="0.6.2"; sha256="0q053jvb2sa762bjnpzkxzdcq1wk82ynp4rjl4j6qncqccvqq0c3"; depends=[]; };
   txtplot = derive2 { name="txtplot"; version="1.0-3"; sha256="1949ab1bzvysdb79g8x1gaknj0ih3d6g63pv9512h5m5l3a6c31h"; depends=[]; };
-  txtq = derive2 { name="txtq"; version="0.0.4"; sha256="0ipfc68m7l72wdnd4lmy7jm2dxs4xayzrd0g58m44dbikgwnw20i"; depends=[base64url filelock fs R6]; };
+  txtq = derive2 { name="txtq"; version="0.1.1"; sha256="1nnwxqxmh820b8ksbqk3g7lnf895684k60k5r1ahh105mqccq2x9"; depends=[base64url filelock fs R6]; };
   types = derive2 { name="types"; version="1.0.0"; sha256="01shcin8wjbhbmzl979fj3008xqxssw90g3bjg42cnjxkmnaql59"; depends=[]; };
   uCAREChemSuiteCLI = derive2 { name="uCAREChemSuiteCLI"; version="0.1.2"; sha256="0nvpmlp8dd250xn3g936wm52s2m6hb82lpvgpdak44ydhhswds0m"; depends=[ChemmineR usethis]; };
-  uGMAR = derive2 { name="uGMAR"; version="2.0.2"; sha256="1rbhinq3s818c11kj5ybz1v3xmfpzz55i7mh20a0r3pq64jdh7kc"; depends=[Brobdingnag]; };
+  uGMAR = derive2 { name="uGMAR"; version="3.0.1"; sha256="19sxzsz21nysxiydcgm0g4sd40jmqvysrxka0j2zcg7yfmg3hr5w"; depends=[Brobdingnag pbapply]; };
   uHMM = derive2 { name="uHMM"; version="1.0"; sha256="1516ipadxi7rc1dbinr5rva2fbcr5i2zg3rlli5wy7r6naf8fzzl"; depends=[chron class cluster clValid corrplot FactoMineR HMM tcltk2 tkrplot]; };
   uaparserjs = derive2 { name="uaparserjs"; version="0.1.0"; sha256="1zhz39jrvi64sj0wvwkm4y8gakfp6kz1knw4wn08kk4fa9ymyjvq"; depends=[dplyr purrr V8]; };
-  uavRmp = derive2 { name="uavRmp"; version="0.5.3"; sha256="05annx1vzpssxf5ycrgk2dizgl83zbwvl2x3bj8r5d8w5lvlpwrb"; depends=[brew data_table devtools gdalUtils geosphere htmltools htmlwidgets log4r maptools raster rgdal rgeos roxygen2 sf sp spatial_tools stringr zoo]; };
-  ubci = derive2 { name="ubci"; version="0.0.2"; sha256="1k2fgzz286qyzqk216saz52s6044zhwgzgv6ra03513vgm9w45ld"; depends=[dplyr httr lubridate magrittr tibble tidyr]; };
+  uavRmp = derive2 { name="uavRmp"; version="0.5.4"; sha256="0djx6z9489pr03bf01y2d79ar840q4ffj39j72c8phz27yz40y04"; depends=[brew data_table devtools gdalUtils geosphere htmltools htmlwidgets log4r maptools raster rgdal rgeos roxygen2 sf sp spatial_tools stringr zoo]; };
+  ubci = derive2 { name="ubci"; version="0.0.3"; sha256="0pczbasicng6zl44kh61jcx8mbmg2na14q2lni10z1liwwk3swsp"; depends=[dplyr httr lubridate magrittr tibble tidyr]; };
   ubeR = derive2 { name="ubeR"; version="0.1.4"; sha256="1ilclna04hd1ykcp2b3gcj0v4qznwx0d24yavxnf2yh5d91wr6z2"; depends=[dplyr ggmap ggplot2 ggthemes googleway httpuv httr jsonlite]; };
   ucbthesis = derive2 { name="ucbthesis"; version="1.0"; sha256="0l855if3a7862lxlnkbx52qa617mby634sbb2gkprj21rwd7lcbp"; depends=[knitr stringr]; };
   ucminf = derive2 { name="ucminf"; version="1.1-4"; sha256="01vggwg1w71k98qs6fhb0x1843vi322mf4g3hbclks94kcpkisx2"; depends=[]; };
-  udapi = derive2 { name="udapi"; version="0.1.1"; sha256="0mhkf1s7pv8d5hbianzcpc3jxps2i6y955n6bplikcz1l1pnb9ib"; depends=[curl httr]; };
-  udpipe = derive2 { name="udpipe"; version="0.6"; sha256="0mzqyp3mhcchfknpspc79fmf5sf9n94dxpvssl393p2fd92gkajy"; depends=[data_table Matrix Rcpp]; };
+  udapi = derive2 { name="udapi"; version="0.1.3"; sha256="0qyn6fdh8ia913hn2dl0x99xsm20ps8zm52snswlyb00prinm668"; depends=[curl httr]; };
+  udpipe = derive2 { name="udpipe"; version="0.7"; sha256="1dmrnlmj3aj01jzhixdkvglqfdsrkqnp52xrvz5pblmwmcdmjflf"; depends=[data_table Matrix Rcpp]; };
   udunits2 = derive2 { name="udunits2"; version="0.13"; sha256="0yav7rm2afcx67xqrknybxgz7x63w78zyxa0xifvc0k2gz0d6mfi"; depends=[]; };
-  uiucthemes = derive2 { name="uiucthemes"; version="0.2.0"; sha256="1z1wx89b2d7z1a2zc4ai05v9slfpidja8f561jcsrcdi9hz2yp81"; depends=[rmarkdown]; };
+  ufs = derive2 { name="ufs"; version="0.0.1"; sha256="0sp4963ijhn5zgni2kcx1shf59p7dr0pigb368fp8b01077q8qqn"; depends=[]; };
+  uiucthemes = derive2 { name="uiucthemes"; version="0.2.1"; sha256="1l96mch9r5npsdv1v4qfyj43ana7a2ff7yj04q6fzhh27v0fx7ak"; depends=[rmarkdown]; };
   ukbabynames = derive2 { name="ukbabynames"; version="0.1.1"; sha256="0vrwcf3hixd40ag6kb289anq2ys2k6vdhhsrjbizvndkyn8sr0r0"; depends=[]; };
   ukbtools = derive2 { name="ukbtools"; version="0.11.0"; sha256="0ww8knrivykk8zx0mqc0bg9f1m64psdpjcxvdn4alhs88ywc71cf"; depends=[data_table dplyr ggplot2 magrittr plyr purrr readr scales stringr tibble tidyr XML]; };
-  ukgasapi = derive2 { name="ukgasapi"; version="0.13"; sha256="0bnblha96ldbxj0nqhcj26d1dk2xm6nkjqqval1jlc2pki20mr9n"; depends=[RCurl XML]; };
-  umap = derive2 { name="umap"; version="0.1.0.3"; sha256="039pmpbh60m9p3i07mg4gv01p3x4ad0ngpcw76dgarr3yqkx4ic6"; depends=[Rcpp reticulate]; };
+  ukgasapi = derive2 { name="ukgasapi"; version="0.15"; sha256="051bavhsqybg0m1nkv52k9vy5a80aanas146ndx0k9dn2mqmpsw7"; depends=[RCurl XML]; };
+  umap = derive2 { name="umap"; version="0.2.0.0"; sha256="1qdq3isrv6dqz462sfwk1albbs6h8lcnqidhwr1jxa09bwinhk7q"; depends=[Rcpp reticulate RSpectra]; };
   ump = derive2 { name="ump"; version="0.5-8"; sha256="1sg226caq9y41cwl7wr5s9z3bpq2j5p6rj6fy2pasbzimgzw0byx"; depends=[]; };
-  umx = derive2 { name="umx"; version="2.8.0"; sha256="06r93dli8rxj0b7kz2s5395xnr8ka4bikdvfda882jjnv2rprdbb"; depends=[cowplot DiagrammeR ggplot2 knitr MASS Matrix mvtnorm nlme numDeriv OpenMx polycor R2HTML RCurl sfsmisc xtable]; };
+  umx = derive2 { name="umx"; version="2.8.5"; sha256="1fi4k6asw3rmh88rvdwrf63xi5yqdd9h0bq1bs10j7h9mw9a119j"; depends=[cowplot DiagrammeR ggplot2 knitr MASS Matrix MuMIn mvtnorm nlme numDeriv OpenMx polycor R2HTML RCurl sfsmisc xtable]; };
   unbalanced = derive2 { name="unbalanced"; version="2.0"; sha256="18hy9nnq42s1viij0a5i9wzrrfmmbf7y3yzjzymz2wnrx4f2pqwv"; depends=[doParallel FNN foreach mlr RANN]; };
   unbalhaar = derive2 { name="unbalhaar"; version="2.0"; sha256="0v6bkin1cakwl9lmv49s0jnccl9d6vdslbi1a7kfvmr5dgy760hs"; depends=[]; };
   uncertainty = derive2 { name="uncertainty"; version="0.2.0"; sha256="1mq14ny7l3gy3wjsqijnm37azavyapxszjnckd861h4hgcpdcdjz"; depends=[mvtnorm triangle]; };
   uncmbb = derive2 { name="uncmbb"; version="0.2.0"; sha256="0cvbh7a81g52hd2qzp23jwwjd5406iszf4wilgrz8sjfrfgybgfm"; depends=[dplyr rlang]; };
   understandBPMN = derive2 { name="understandBPMN"; version="1.1.0"; sha256="11ijxr5nzg6ivx2c9shgba9nfjb8ixypbj8jvhl7zjkwjrpb6f1y"; depends=[devtools dplyr purrr R_utils Rcpp tibble tidyr XML]; };
-  unfoldr = derive2 { name="unfoldr"; version="0.6.5"; sha256="18k1bq3vdsiyg55zvs0sx5wgmslxvj283g742rkh214mfy5d89l5"; depends=[]; };
+  unfoldr = derive2 { name="unfoldr"; version="0.6.9"; sha256="1zr5k1vcqp16zc9i538fk5gcs900nsl140vx2dpi818jv84md1ij"; depends=[]; };
   ungeneanno = derive2 { name="ungeneanno"; version="0.1.6"; sha256="0fm47vmzn4z73pn37p94r84lbkg5amk0sl78304ibwz0rhlda0y5"; depends=[httr XML]; };
+  ungroup = derive2 { name="ungroup"; version="1.1.1"; sha256="0jrxxp93ak9bva98j3nmkhrb7znz7lpywk56415k4b2rzpy3j7fs"; depends=[MortalitySmooth pbapply Rcpp RcppEigen Rdpack rgl]; };
   uniCox = derive2 { name="uniCox"; version="1.0"; sha256="1glgk6k8gwxk3haqaswd2gmr7a2hgwjkwk2i1qc5ya7gg8svyavv"; depends=[survival]; };
   uniReg = derive2 { name="uniReg"; version="1.1"; sha256="0wjc7pgaisvk26j7grxp2ypsabb5my9wg6c9i5w9zhh5jdx1fdab"; depends=[DoseFinding MASS mvtnorm quadprog SEL]; };
   uniah = derive2 { name="uniah"; version="1.0"; sha256="19zwy33gwa749i81mi9h05k8k3l4xbbln3k6q70fa7ic5lqbbdzj"; depends=[ahaz Iso survival]; };
   unifDAG = derive2 { name="unifDAG"; version="1.0.1"; sha256="1zf2pclddswrssil7ikq75449ks3070jxkzy2lmggq9gyipdypps"; depends=[gmp graph]; };
+  uniformly = derive2 { name="uniformly"; version="0.1.0"; sha256="0n3s0x05v4d79jn51nwj06gm074rgy269f57y2q5z0bkwyp6yc7n"; depends=[pgnorm]; };
   uniftest = derive2 { name="uniftest"; version="1.1"; sha256="0a37m7l3lc6rznx10w9h9krnn5paim2i2wvw47ckwag7bv0d4pm4"; depends=[orthopolynom]; };
   uniqtag = derive2 { name="uniqtag"; version="1.0"; sha256="025q71mzdv3n1jw1fa37bbw8116msnfzcia01p1864si04ch5358"; depends=[]; };
   unitedR = derive2 { name="unitedR"; version="0.3.1"; sha256="06plbhjbn1gflpxarn21knhiwfr02vxprak9qcghl30fkkymd02r"; depends=[plyr]; };
   unitizer = derive2 { name="unitizer"; version="1.4.5"; sha256="1ml1x9jvwmh8mg2w2j2g8ffibw6a1ihj0aih11zzf4gjhs0w5p9d"; depends=[crayon diffobj]; };
-  units = derive2 { name="units"; version="0.6-0"; sha256="06g4ihhxvcc9d28zd1nznd2h5fd8zamq7jcxw6qj0ghb8878mw2n"; depends=[Rcpp]; };
+  units = derive2 { name="units"; version="0.6-1"; sha256="0gafl1d89gvmpndmkb9ng7dqhvnb5cx9igza0rjdrdn285icb07i"; depends=[Rcpp]; };
   unittest = derive2 { name="unittest"; version="1.3-0"; sha256="0haf3s3pc5bhsm6y5njghr9w8ifsjxczm5r7g0ynylwzvd019n8b"; depends=[]; };
   univOutl = derive2 { name="univOutl"; version="0.1-4"; sha256="041cc1jn95zababc4i84c378i204zkn865k2vd7mk1piwm3qkrj5"; depends=[Hmisc robustbase]; };
   unix = derive2 { name="unix"; version="1.3"; sha256="1l5w22j0h3qzya13wx7y8lx2baw496vcmn39l2y8r1v38as9dybc"; depends=[]; };
@@ -12330,6 +12878,7 @@ in with self; {
   unsystation = derive2 { name="unsystation"; version="0.2.0"; sha256="02da7wzzk5bwd475i67v5x04ay2bn5yd5xffl1asqcqxcc5sy0m8"; depends=[doParallel foreach iterators Rcpp RcppArmadillo]; };
   untb = derive2 { name="untb"; version="1.7-3"; sha256="1324gn42qxw4cf3jg9vd8nwxiw4w4fg6p2xhzmn636q5wlziln5c"; depends=[Brobdingnag partitions polynom]; };
   unvotes = derive2 { name="unvotes"; version="0.2.0"; sha256="0wanvivwm1nmqadq2vapg27kasnjnr0a4np2kw54wj9pg21izqic"; depends=[]; };
+  updog = derive2 { name="updog"; version="1.0.1"; sha256="0y2w62f25an1d7fpkiqhimak0ww201r873sjb08akwf82v4k34wz"; depends=[assertthat doParallel foreach ggplot2 ggthemes Rcpp RcppArmadillo stringr]; };
   uplift = derive2 { name="uplift"; version="0.3.5"; sha256="11xikfmg6dg8mhwqq6wq9j9aw4ljh84vywpm9v0fk8r5a1wyy2f6"; depends=[coin MASS penalized RItools tables]; };
   upmfit = derive2 { name="upmfit"; version="0.1.0"; sha256="0f0rk606v17abgw3mwlwihl6fsxprp44h2xbhv1675i18i36vbgx"; depends=[mcmcplots R2jags]; };
   uptasticsearch = derive2 { name="uptasticsearch"; version="0.3.0"; sha256="09g50szxbgc7x2py647lzwmljspks7s6xbbjplbzbpkdc2z4pndh"; depends=[assertthat data_table futile_logger httr jsonlite purrr stringr uuid]; };
@@ -12338,32 +12887,33 @@ in with self; {
   uqr = derive2 { name="uqr"; version="1.0.0"; sha256="0f7isjfb5almp1zypxzw3lfkygkcixmg0xdsw0zznf61r6qhbqyr"; depends=[gtools Hmisc]; };
   urca = derive2 { name="urca"; version="1.3-0"; sha256="1akaqwf3fvvvx4sgfn641fd4sj51s0701pvfl6s5hnz2k0iwh732"; depends=[nlme]; };
   urlshorteneR = derive2 { name="urlshorteneR"; version="0.9.2"; sha256="1y5n1rn2c7yj5ncxfnsrj9lvaam2j3vvx8ld1vqyjay1r8flzifd"; depends=[httr jsonlite stringr]; };
-  urltools = derive2 { name="urltools"; version="1.7.0"; sha256="0kxv54j4rf8jwyfv3z3plyb9vycwi0m1jv7z2nxnm3729p72y9xl"; depends=[Rcpp triebeard]; };
+  urltools = derive2 { name="urltools"; version="1.7.1"; sha256="01h3fwk5mzicy2isvdla9r0zxrxhaf902xx4dg3f16a1l4fgi1a4"; depends=[Rcpp triebeard]; };
   uroot = derive2 { name="uroot"; version="2.0-9"; sha256="0nxc8d4v9v5z3wbnj325iq2yrh0mipqgg2rn8pp2jyyq9vb1cxlv"; depends=[]; };
   usdm = derive2 { name="usdm"; version="1.1-18"; sha256="1sis47fri2lrbx2ll5ps7bvycjqhncnia800izf11szgayim5lrv"; depends=[raster sp]; };
   usedist = derive2 { name="usedist"; version="0.1.0"; sha256="17mldp0888ig2xc8cp1nhldj5g3srwmbx3mfcnzz21n1fz31jkmg"; depends=[]; };
-  useful = derive2 { name="useful"; version="1.2.5"; sha256="05198zzlvzmmsic3g6nlxlwivpaszkzx61ximw0v4i4sahblxmp7"; depends=[assertthat dplyr ggplot2 magrittr Matrix plyr purrr scales]; };
-  userfriendlyscience = derive2 { name="userfriendlyscience"; version="0.7.1"; sha256="1lkxzd5j51q57m5fqv21y6m37fgjwzjh0hhf940czhlwkk1idyld"; depends=[BiasedUrn car data_tree DiagrammeR digest diptest fBasics GGally ggplot2 ggrepel ggridges GPArotation gridExtra gtable knitr lavaan lme4 MASS MBESS minpack_lm pander plyr psych pwr RColorBrewer rio scales SCRT SuppDists viridis XML xtable]; };
-  usethis = derive2 { name="usethis"; version="1.3.0"; sha256="0r61pf8qisjvrshm6jpcb76ck1v79s7lg9zwdgad4fasyyrzrcx2"; depends=[backports clipr clisymbols crayon curl desc gh git2r httr rematch2 rmarkdown rprojroot rstudioapi styler whisker]; };
+  useful = derive2 { name="useful"; version="1.2.6"; sha256="0n50v1q75k518sq23id14jphwla35q4sasahrnrnllwrachl67v1"; depends=[assertthat dplyr ggplot2 magrittr Matrix plyr purrr scales]; };
+  userfriendlyscience = derive2 { name="userfriendlyscience"; version="0.7.2"; sha256="17arxxha8qr876nrf9szpymgamxlvacj3lfbmpiv973kyi3hr7m4"; depends=[BiasedUrn car data_tree DiagrammeR digest diptest GGally ggplot2 ggrepel ggridges GPArotation gridExtra gtable knitr lavaan lme4 MASS MBESS minpack_lm pander plyr psych pwr RColorBrewer rio scales SCRT SuppDists ufs viridis XML xtable]; };
+  usethis = derive2 { name="usethis"; version="1.4.0"; sha256="1gadckx3sxz9gxvpkprj9x7zcgg2nz5m4q0vi76ya9li1v03rwwn"; depends=[clipr clisymbols crayon curl desc fs gh git2r glue rlang rprojroot rstudioapi whisker]; };
   usfertilizer = derive2 { name="usfertilizer"; version="0.1.5"; sha256="05zjn39hqjjzzp4v4b1zbqq59205s7k0kikms951h57kbyvjz6vk"; depends=[tidyverse]; };
   uskewFactors = derive2 { name="uskewFactors"; version="2.0"; sha256="0ndi5987ak8sa7krgiglsibfg0k7z9j8fg47hg1m8ar0sq4r1yj6"; depends=[MASS MCMCpack mvtnorm tmvtnorm]; };
   usl = derive2 { name="usl"; version="1.8.0"; sha256="04w7p9i08a51smgg11kh4hablic5rjmr5hndrnlg49j5h20i7w1v"; depends=[nlsr]; };
-  usmap = derive2 { name="usmap"; version="0.3.0"; sha256="0zf3frhdg08fa5m25gln5b7xpbyjr0sbybyih0yd5hgvw0fnk4dm"; depends=[]; };
+  usmap = derive2 { name="usmap"; version="0.4.0"; sha256="1sslvh2wbc52dnc9sy8m312amykcl5bvqhws1lvma5d21jn3scmh"; depends=[]; };
   ustyc = derive2 { name="ustyc"; version="1.0.0"; sha256="1267bng2dz3229cbbq47w22i2yq2ydpw26ngqa1nbi3ma6hwqsv4"; depends=[plyr XML]; };
   utf8 = derive2 { name="utf8"; version="1.1.4"; sha256="0m0ywg8k3blfiahxvh1i4zn9dksrlc937d2lbza5fc38zjnrrnpn"; depends=[]; };
   utf8latex = derive2 { name="utf8latex"; version="1.0.4"; sha256="12isrl056h7y7nr7wk52dnvf3frcp66qqy7si869ark2aj81f959"; depends=[]; };
-  utility = derive2 { name="utility"; version="1.4.2"; sha256="0q08yc0sxbcjhsr0nkgc2pyxkd93zwlbf0jyq21cf535mj4036gq"; depends=[]; };
+  utility = derive2 { name="utility"; version="1.4.3"; sha256="12g2y9xzzi2sl3ya3va1p7nc7hrjhr4arsz06f8xlxw5n8kvdxag"; depends=[]; };
   utilsIPEA = derive2 { name="utilsIPEA"; version="0.0.6"; sha256="07avc0j6qkzqmznbydn0zdg743g7g7kn2bcx5n03m3wg0fqyggr7"; depends=[data_table dplyr RCurl stringdist stringr]; };
   utiml = derive2 { name="utiml"; version="0.1.4"; sha256="1z93a7ldgkab6hsa9a0hzyhxsbac45sgqn7fy2jh615d2kw7pqr1"; depends=[mldr]; };
   uuid = derive2 { name="uuid"; version="0.1-2"; sha256="1gmisd630fc8ybg845hbg13wmm3pk3npaamrh5wqbc1nqd6p0wfx"; depends=[]; };
+  uwIntroStats = derive2 { name="uwIntroStats"; version="0.0.7"; sha256="0lihcjd79sqnw64bd2d4p02rl7fmzpyykrdi7b5dsnnwjhr0ks6r"; depends=[Exact geepack plyr sandwich survival]; };
   vMask = derive2 { name="vMask"; version="1.0"; sha256="14zfmgidlvlmm9anjcz3wvz4crc24ysq7jj1j1078fp7px5vvr8z"; depends=[]; };
   vaersNDvax = derive2 { name="vaersNDvax"; version="1.0.4"; sha256="0hvw7vbxs87c9xkdv3617fkjwz2dbawscbd7dgaixhdhcr3k823a"; depends=[]; };
-  vaersvax = derive2 { name="vaersvax"; version="1.0.4"; sha256="15znkwbhr624qgwlcrdhaxpdfl85ym845mr2sy8b016d3ngz7n94"; depends=[]; };
-  vagalumeR = derive2 { name="vagalumeR"; version="0.1.1"; sha256="1l1p63yhwqvkh8kgqii9n96vdm86jfc64nrinjp5l7jhx99sn013"; depends=[httr jsonlite plyr stringr]; };
+  vaersvax = derive2 { name="vaersvax"; version="1.0.5"; sha256="0bfbpdjnykvb9r0p28bz8lrqxksy4jvwnd28y6gdlprpisiipiic"; depends=[]; };
+  vagalumeR = derive2 { name="vagalumeR"; version="0.1.3"; sha256="11f3jk5arpfbjdh1a84iwdr8hn3lq3g03n457lmlhkvl49vh5fq9"; depends=[httr jsonlite plyr stringr]; };
   valaddin = derive2 { name="valaddin"; version="0.1.2"; sha256="0j1c3g9gn2j0manz3jjh58cnl7b1rfwm9494xqrfqpia8948p9vq"; depends=[lazyeval purrr]; };
   valection = derive2 { name="valection"; version="1.0.0"; sha256="0104zcg3cw57ksgmb321hnyv095mn3frxci9vikj1smwarpnrpzc"; depends=[testthat]; };
   validann = derive2 { name="validann"; version="1.2.1"; sha256="00c0hkjiv8n7mksx6sknb4xkkivxr1ml31k697csv4imwrk09dy5"; depends=[moments]; };
-  validate = derive2 { name="validate"; version="0.2.5"; sha256="069r6a0l719napmrf37rwi2dvm4ql5ip3g7kba3s96b1qamh8afi"; depends=[settings yaml]; };
+  validate = derive2 { name="validate"; version="0.2.6"; sha256="0aadfqk02c3qjzyn0n7g62b5dv1mhyic76xprfa2cdy3sg8vp8jd"; depends=[settings yaml]; };
   validateRS = derive2 { name="validateRS"; version="1.0.0"; sha256="1ivw9ddr6z2wrsqvhbn87p5pikhkxlz8p45pb5nq13dvs359vkww"; depends=[data_table reshape2 triangle truncnorm]; };
   validatejsonr = derive2 { name="validatejsonr"; version="1.0.4"; sha256="1n8jf7j3hvz47z1x3gqz5yj5wxfjzz0zgzkgckdvy1nbsqf7w3cr"; depends=[Rcpp]; };
   validatetools = derive2 { name="validatetools"; version="0.4.3"; sha256="1v6mmk3iq5nzzjkkj1spiqfmqq2133xg2qyy3y8h4pwwfynp4v7c"; depends=[lpSolveAPI validate]; };
@@ -12371,46 +12921,51 @@ in with self; {
   valottery = derive2 { name="valottery"; version="0.0.1"; sha256="0rlv8agm9ng4jcb9ixqifh7kjczvkx7047brq8yf9kg7rb8mzgpz"; depends=[]; };
   valr = derive2 { name="valr"; version="0.4.1"; sha256="0w9hgcyvmny2z1k2phnid60y8qvwbp47dy7q85ppd3j1cxyik5id"; depends=[BH bindrcpp broom dplyr ggplot2 plogr Rcpp readr rlang stringr tibble]; };
   valuer = derive2 { name="valuer"; version="1.1.2"; sha256="0mbwzsvy34ppngyxdzpd9w1r4f00cik4maqab9kpiflrrv9xdp78"; depends=[ggplot2 orthopolynom R6 Rcpp RcppEigen timeDate yuima]; };
+  vamc = derive2 { name="vamc"; version="0.1.0"; sha256="1rcyj2zsx33rxmhw7p1i45cm6z6380df0bayxlyizi7vh43ggy6p"; depends=[Rdpack]; };
   vanddraabe = derive2 { name="vanddraabe"; version="1.0.0"; sha256="0hnfkwrrk50a5rica3lk2d52qi77xya3aspf13g0zygbyvv7ls72"; depends=[bio3d cowplot fastcluster ggplot2 openxlsx reshape2 scales]; };
+  vanquish = derive2 { name="vanquish"; version="1.0.0"; sha256="01di1j36npl7vnyhgsagvyf6j8bxcw867dwf9dgi7l1328s7lf0l"; depends=[changepoint e1071 ggplot2 VGAM]; };
+  vapour = derive2 { name="vapour"; version="0.1.0"; sha256="0skayxfwr9dqdr0mxj7h0gz08niib9mgv5vgl621fnzw481282fn"; depends=[Rcpp]; };
+  varImp = derive2 { name="varImp"; version="0.2"; sha256="1jc6aadcqqrmn5wsh2spq21nc20jpfdh9rspzsk99aymnv46sdyv"; depends=[measures party]; };
   varSel = derive2 { name="varSel"; version="0.1"; sha256="0ddj3swfxzchs75kfi6h25h3c33hpapnd5kcwcijnqhlh902b1r0"; depends=[]; };
   varSelRF = derive2 { name="varSelRF"; version="0.7-8"; sha256="0h49rl1j13yfh97rsfsyh9s2c4wajny4rzms2qw77d0cavxqg53i"; depends=[randomForest]; };
   varband = derive2 { name="varband"; version="0.9.0"; sha256="16z66rx7xq5zan8pnw100c9r5syw1ml4hgzi9mch52aia23v21p9"; depends=[Rcpp RcppArmadillo]; };
+  varbin = derive2 { name="varbin"; version="0.2.1"; sha256="0gcynwc0vx7qlp3z0pcc4i7mjlnxkwy8ydxz2wr244fw32qgp4kq"; depends=[rpart]; };
   varbvs = derive2 { name="varbvs"; version="2.4-0"; sha256="0f6c9acrir8c8m8mg928azlp31yh49faz5s2g7cbgf5f1pxi07nl"; depends=[lattice latticeExtra Matrix Rcpp]; };
   vardiag = derive2 { name="vardiag"; version="0.2-1"; sha256="07i0wv84sw035bpjil3cfw69fdgbcf2j8wq4k22narkrz83iyi2z"; depends=[]; };
-  vardpoor = derive2 { name="vardpoor"; version="0.10.0"; sha256="0v1l6rw8in0nr1a7g1mgfimjxjzjww174y8vxvmgirlifnnjxkc8"; depends=[data_table foreach laeken MASS plyr stringr surveyplanning]; };
+  vardpoor = derive2 { name="vardpoor"; version="0.12.0"; sha256="1a6s2zip5lks4yfmpdiplqzfx97xsfyhr61yizvmm0yrnwr1a4g9"; depends=[data_table foreach ggplot2 laeken MASS plyr pracma stringr surveyplanning]; };
   varhandle = derive2 { name="varhandle"; version="2.0.3"; sha256="11yisjgqc8fq0sj1kzgp51i926cs4yqkpfmbis5ak786wqalc6na"; depends=[]; };
-  variables = derive2 { name="variables"; version="1.0-0"; sha256="0i1nmrbps1snyzdwlki7sfxf2vpqghd9ap8pmy235d5r399jmpkb"; depends=[]; };
+  variables = derive2 { name="variables"; version="1.0-1"; sha256="05bqhkzava24z7dqg79vf9144d226rr5mby6ry32lqyx7w0gql9x"; depends=[]; };
   varian = derive2 { name="varian"; version="0.2.2"; sha256="0jyw46qx2w19h02mrwv3w3n8qc1n4b3ckm38qly1y4a4w9ib6c2i"; depends=[Formula ggplot2 gridExtra MASS rstan]; };
   variosig = derive2 { name="variosig"; version="0.1"; sha256="191d4f52z686s8xbx7aw9c3qjp77iri43l52n8nxjgfjl877x5m4"; depends=[geoR gstat sp]; };
   varjmcm = derive2 { name="varjmcm"; version="0.1.0"; sha256="02l0d896faakh9pdq2rzl2psmrj7l2pvacz7nk3r6552glsk7h18"; depends=[expm jmcm MASS Matrix]; };
   varrank = derive2 { name="varrank"; version="0.1"; sha256="1ynpnzfvwbwfpcv7rqlkvxmmafnjgdssr5l42rr3bklm9j1z71vm"; depends=[FNN]; };
-  vars = derive2 { name="vars"; version="1.5-2"; sha256="1q45z5b07ww4nafrvjl48z0w1zpck3cd8fssgwgh4pw84id3dyjh"; depends=[lmtest MASS sandwich strucchange urca]; };
+  vars = derive2 { name="vars"; version="1.5-3"; sha256="0zc6v827ll19n088n31afgjf65zqwvyzmmj4q3ab1xhqzxfsgbw6"; depends=[lmtest MASS sandwich strucchange urca]; };
   vbdm = derive2 { name="vbdm"; version="0.0.4"; sha256="1rbff0whhbfcf6q5wpr3ws1n4n2kcr79yifcni12vxg69a3v6dd3"; depends=[]; };
   vbsr = derive2 { name="vbsr"; version="0.0.5"; sha256="1avskbxxyinjjdga4rnghcfvd4sypv4m39ysfaij5avvmi89bx3b"; depends=[]; };
   vcd = derive2 { name="vcd"; version="1.4-4"; sha256="1lp99h0wvsc61l1dgcqjxdrcgpgw88ak430cdsv43kmm43qssqd5"; depends=[colorspace lmtest MASS]; };
   vcdExtra = derive2 { name="vcdExtra"; version="0.7-1"; sha256="163x9hhvhgdmrqbcig7b120lk63svy0y652scbrcb11f85zrgb0c"; depends=[ca gnm MASS vcd]; };
   vcfR = derive2 { name="vcfR"; version="1.8.0"; sha256="1684lamsivwaqzvmwzhrrziwczkaqn3mhbdr86zbjdhr1jcgkz2z"; depends=[ape dplyr magrittr memuse pinfsc50 Rcpp stringr tibble vegan viridisLite]; };
   vcov = derive2 { name="vcov"; version="0.0.1"; sha256="1w89mr8dk6436bxap28rszajgm9k7sjfqsr1i4p68dlhw8zk4yq1"; depends=[]; };
-  vcr = derive2 { name="vcr"; version="0.1.0"; sha256="1f0hjfip7k9gd7lbaqk97idan2qfns7yiw6rsxp8q7szmjyhb6ga"; depends=[base64enc crul lazyeval R6 urltools webmockr yaml]; };
+  vcr = derive2 { name="vcr"; version="0.2.0"; sha256="1zr94hxch8k8pcgpm43fip8wrlqswb0pjv0py66rpf9nn08nwjvy"; depends=[base64enc crul httr lazyeval R6 urltools webmockr yaml]; };
   vcrpart = derive2 { name="vcrpart"; version="1.0-2"; sha256="1xfvsxgyf39d2qxnm40nzkqp7q12y8nbpn9h154n876zxxfs7gh1"; depends=[formula_tools nlme numDeriv partykit rpart sandwich strucchange ucminf zoo]; };
   vdg = derive2 { name="vdg"; version="1.2.0"; sha256="1hi5d14nh9q784sbdk018awrawh9f1aix0wl26x7n0xb4707rcmy"; depends=[ggplot2 gridExtra proxy quantreg]; };
   vdiffr = derive2 { name="vdiffr"; version="0.2.3"; sha256="0rsznvbymlwdjl9qdll98x8cqkf8rdi20c5sw4w547sfxr664yl0"; depends=[devtools fontquiver gdtools glue htmlwidgets purrr R6 Rcpp rlang shiny svglite testthat xml2]; };
-  vdmR = derive2 { name="vdmR"; version="0.2.5"; sha256="1v96khvg3k33kg3aavanl8g05n5mjkbqsbf8c4lya73f3rs4sfgb"; depends=[broom dplyr GGally ggplot2 gridSVG maptools plyr Rdpack rgdal rgeos rjson Rook sp]; };
+  vdmR = derive2 { name="vdmR"; version="0.2.6"; sha256="15d3yrwiqs7cfyzl6v5vqgi33arx9lxjbqpif9zzfb56j0x1xsk5"; depends=[broom dplyr GGally ggplot2 gridSVG maptools plyr Rdpack rgdal rgeos rjson Rook sp]; };
   vec2dtransf = derive2 { name="vec2dtransf"; version="1.1"; sha256="029xynay9f9rn0syphh2rhd3szv50ib4r0h0xfhhvbbb37h5dc9s"; depends=[sp]; };
   veccompare = derive2 { name="veccompare"; version="0.1.0"; sha256="03nyyxvhhwfxxg5w6qflk7q234ipbhj9fd4abcp50sxz3diabch1"; depends=[corrplot gtools pander purrr qgraph reshape2 VennDiagram]; };
   vecsets = derive2 { name="vecsets"; version="1.2.1"; sha256="086af6swjpbkd140yvb76affy5gn4p9xm41m3akm8axc3qk0hybg"; depends=[]; };
   vegalite = derive2 { name="vegalite"; version="0.6.1"; sha256="0dlzhvrg3nj6knyycdgg3d1vzq3dn9vxb34fjin9hzilszqmarbk"; depends=[base64 clipr digest htmltools htmlwidgets jsonlite magrittr webshot]; };
-  vegan = derive2 { name="vegan"; version="2.5-2"; sha256="13pyqvlpz64qibi8k5d109v7q09j06mbv6ndix3n4cn21mjx391c"; depends=[cluster lattice MASS mgcv permute]; };
-  vegan3d = derive2 { name="vegan3d"; version="1.1-1"; sha256="1jd9m2immkhgb1zr39gsgl746y7qpi5fhj8awmqq5lyr5j6jp6jh"; depends=[cluster rgl scatterplot3d vegan]; };
+  vegan = derive2 { name="vegan"; version="2.5-3"; sha256="023xznh0iy0496icpchadmp7a3rk3nj9s48fvwlvp3dssw58yp3c"; depends=[cluster lattice MASS mgcv permute]; };
+  vegan3d = derive2 { name="vegan3d"; version="1.1-2"; sha256="01yyhrapdvs6rr5hw1ij4jnpz7mq005s35pn96snpy8ngn6ir386"; depends=[cluster rgl scatterplot3d vegan]; };
   vegclust = derive2 { name="vegclust"; version="1.7.4"; sha256="1fz3p5jpqy99r601dj9fahgv32vw0v54jlrq48wn81rzg2wwfmk7"; depends=[Kendall Rcpp sp vegan]; };
-  vegdata = derive2 { name="vegdata"; version="0.9.1"; sha256="0w4dk7qcl89w04qgnlna5lk5hxnyrvwmgjjxmnvb6r5dspq7qyad"; depends=[foreign httr jsonlite XML]; };
+  vegdata = derive2 { name="vegdata"; version="0.9.5"; sha256="145frmlsdb7m5z8qa03js4061pqmgvy3gykxkpiv1wv2wnfzyvnr"; depends=[foreign XML]; };
   vegetarian = derive2 { name="vegetarian"; version="1.2"; sha256="15ys1m8p3067dfsjwz6ds837n6rqd19my23yj8vw78xli3qmn445"; depends=[]; };
   vegtable = derive2 { name="vegtable"; version="0.1.3"; sha256="1pjbqhc09bmyjxx21z01dysbvwbx7v0mxm9xbcmfxdmr10adhian"; depends=[foreign plotKML qdapRegex sp stringi taxlist vegdata]; };
-  vein = derive2 { name="vein"; version="0.3.35"; sha256="0jmsr7vw2p7r6z3s1kqkrnkd5f0w6mjzv2ln3s446c1z3bmvv5zv"; depends=[data_table eixport sf sp units]; };
+  vein = derive2 { name="vein"; version="0.5.2"; sha256="1iwmh8kd4sa4bby9vycsg6wby63yri3vj310q3kvkd8b7k7z2vlw"; depends=[data_table eixport sf sp units]; };
   velociraptr = derive2 { name="velociraptr"; version="1.0"; sha256="1n7q08i37qbbh5cjq6jb4gmpzzip3wx2wx8xx5wpkln8n3nyiqki"; depends=[RCurl rgdal]; };
   velox = derive2 { name="velox"; version="0.2.0"; sha256="1jrarfsfflvpc0dqh5gnw92fk8zic222n7pr7hd0lhr5d389k6d0"; depends=[BH raster Rcpp rgdal rgeos sf sp]; };
   vembedr = derive2 { name="vembedr"; version="0.1.3"; sha256="0zg6j0g9l7j36ifwabhxrin5z0dics66bqkc7x6rqijmizk1xpba"; depends=[htmltools httr magrittr stringr]; };
-  venn = derive2 { name="venn"; version="1.6"; sha256="0ipfysb9kjq07rvf6szy1cci4waw905bavk9bs60aii5858k9rcs"; depends=[]; };
+  venn = derive2 { name="venn"; version="1.7"; sha256="0lll5bcwx64di4m0k56f00vsfaas2l2mkcbblniq302v0g12v8cj"; depends=[]; };
   vennLasso = derive2 { name="vennLasso"; version="0.1.2"; sha256="1lma34msdl8ik0375bh4adbfgvcy0crv29gpsk7p6x75464jsp9y"; depends=[foreach igraph MASS Matrix Rcpp RcppEigen RcppNumerical survival VennDiagram visNetwork]; };
   venneuler = derive2 { name="venneuler"; version="1.1-0"; sha256="10fviqv9vr7zkmqm6iy2l9bjxglf2ljb7sx423vi4s9vffcxjp17"; depends=[rJava]; };
   vennplot = derive2 { name="vennplot"; version="1.0"; sha256="0x59awa1zsjwk5qb1jzv6d2mn2fm4aq1lq8zlbnf1da0h4837yab"; depends=[Rcpp rgl stringr]; };
@@ -12419,29 +12974,29 @@ in with self; {
   vertexenum = derive2 { name="vertexenum"; version="1.0.2"; sha256="16ywz3z1kzhb3knhhi2i5igm3djdaaxyyrw69wkc5saa7ayhdb4y"; depends=[numbers]; };
   vesselr = derive2 { name="vesselr"; version="0.2.1"; sha256="1wzprnpiv04gxhqgki36gp1a0xj9l3mchllphwkfsdja4axq3prk"; depends=[oro_nifti pbapply pbmcapply]; };
   vetools = derive2 { name="vetools"; version="1.3-28"; sha256="1470xgqdq9n5kj86gdfds15k3vqidk3h99zi3g76hhyfl8gyl1c0"; depends=[lubridate maptools plyr scales sp stringr tis xts]; };
-  vetr = derive2 { name="vetr"; version="0.2.5"; sha256="164zs1bxhkjzicip95lhyb2yi4hgg08zm6i18z6g4bjgn1ban1id"; depends=[]; };
+  vetr = derive2 { name="vetr"; version="0.2.6"; sha256="02sa0l4dh0n066y0ls377dh6q4fdhlx2jj80gk5c5x9l5ms649xk"; depends=[]; };
   vfcp = derive2 { name="vfcp"; version="1.4.0"; sha256="0zj1ihqdx5x1695al1xyi8k001yw8x7gdss72myxlnh7b4flnp9m"; depends=[copula extraDistr stringr]; };
   vhica = derive2 { name="vhica"; version="0.2.4"; sha256="0km49lrzn9rm3wxadwxc290dvx3bsblbmna7f9lnkq6g1z5jdqwg"; depends=[]; };
   vietnamcode = derive2 { name="vietnamcode"; version="0.1.1"; sha256="0vc0c1fg30afar2dkch5h27b8jbglcd9ja6d5hcypnibqz4c68vz"; depends=[]; };
-  vimp = derive2 { name="vimp"; version="1.0.0"; sha256="0q92zgs52nxrxswnvascbpfvg51hvy08cwjy2vjjvzjydicsfnxh"; depends=[SuperLearner]; };
-  vinereg = derive2 { name="vinereg"; version="0.3.0"; sha256="05vd9ilnx9cswsa21bnw6p5q44yyc7adm4xh966dnsdrsdj6dd7s"; depends=[cctools furrr future kde1d rvinecopulib]; };
+  vimp = derive2 { name="vimp"; version="1.1.4"; sha256="146z6xismk97613cdiz508hn0mgg0w0rqnjb9as66sq57kqgn5yn"; depends=[SuperLearner]; };
+  vinereg = derive2 { name="vinereg"; version="0.5.0"; sha256="17qni21jaizmfzl975xd39ahlc5flfnmy6xy7n9adfv346f3zwp0"; depends=[cctools furrr future kde1d rvinecopulib]; };
   vines = derive2 { name="vines"; version="1.1.5"; sha256="057d2fdh03cq9kh4vz94arqscahmz14xbr2g59l0vn205lnyilf1"; depends=[ADGofTest copula cubature TSP]; };
   violinmplot = derive2 { name="violinmplot"; version="0.2.1"; sha256="1j3hb03y988xa704kp25v1z1pmpxw5k1502zfqjaf8cy4lr3kzsc"; depends=[lattice]; };
   vioplot = derive2 { name="vioplot"; version="0.2"; sha256="16wkb26kv6qr34hv5zgqmgq6zzgysg9i78pvy2c097lr60v087v0"; depends=[sm]; };
   viopoints = derive2 { name="viopoints"; version="0.2-1"; sha256="0cpbkkzm1rxch8gnvlmmzy8g521f5ang3nhlcnin419gha0w6avf"; depends=[]; };
-  vip = derive2 { name="vip"; version="0.1.0"; sha256="1blyyy17f4gxhbw7jwwf0xrq4ha142k356dfhasnvk4jqrpajcxc"; depends=[dplyr ggplot2 gridExtra magrittr pdp plyr tibble tidyr]; };
+  vip = derive2 { name="vip"; version="0.1.2"; sha256="1y4v0qd7qag9jw9vazlnl3hp4813lcbhmbq60s3znhdmxnbb4irw"; depends=[ggplot2 gridExtra magrittr ModelMetrics pdp plyr tibble]; };
   vipor = derive2 { name="vipor"; version="0.4.5"; sha256="112gc0d7f8iavgf56pnzfxb7hy75yhd0zlyjzshdcfbnqcd2a6bx"; depends=[]; };
   viridis = derive2 { name="viridis"; version="0.5.1"; sha256="060rf1jn29dq53y3nhb0hykvcap6rqsk04rq544ypiiqb18ngwnx"; depends=[ggplot2 gridExtra viridisLite]; };
   viridisLite = derive2 { name="viridisLite"; version="0.3.0"; sha256="1by2l05f0yabwvv64lhnv7bbhx0w683s3wr9j2xda920ghpa23kq"; depends=[]; };
-  virtualspecies = derive2 { name="virtualspecies"; version="1.4-2"; sha256="19qw8vqf08x6fgm8w159qabpgr2wv2cxishpj6888ihcaa9ykp8f"; depends=[ade4 dismo raster rworldmap]; };
+  virtualspecies = derive2 { name="virtualspecies"; version="1.4-4"; sha256="04byc39id5vn22h06b0yqb08bxnpsfdgig4v5r8hjv240c0p8q91"; depends=[ade4 raster rworldmap sp]; };
   virustotal = derive2 { name="virustotal"; version="0.2.1"; sha256="0lky75al8zcvmfgx7a2s3bij8ya4avdsnv046lk7564zfd8rbymw"; depends=[httr plyr]; };
   visNetwork = derive2 { name="visNetwork"; version="2.0.4"; sha256="05gdsma70zvkgly9qscbwy98x8zrqgsk93czb37jp0as365l00q5"; depends=[htmltools htmlwidgets jsonlite magrittr]; };
   visdat = derive2 { name="visdat"; version="0.5.1"; sha256="1vnfwldzq5ddqk8prj4cg0dmkbjhpchdkb6v8kicd876dv8vxy2q"; depends=[dplyr ggplot2 magrittr plotly purrr readr rlang tibble tidyr]; };
   visreg = derive2 { name="visreg"; version="2.5-0"; sha256="0n19k6rsmpqga6r8lyhjviqs3nw881dhr211621m2cl7knqhhi4y"; depends=[lattice]; };
-  vistime = derive2 { name="vistime"; version="0.5.0"; sha256="1h7dm66m0qx3hmfx1hlv5na65swdhdykyg1fsqzgnjl6p98cg81j"; depends=[plotly RColorBrewer]; };
+  vistime = derive2 { name="vistime"; version="0.6.0"; sha256="1ah3zwz2ikzd8y2rbff65mdd9lp4yd328mb2971afr2xdd9gvvqd"; depends=[plotly RColorBrewer]; };
   visualFields = derive2 { name="visualFields"; version="0.5.4"; sha256="19fb1qq4kyhln21dmf7wm6kqf7g94ls7nsaspl2q9d3rlmcgz5h3"; depends=[deldir flip gtools Hmisc matrixStats spatstat]; };
   visualize = derive2 { name="visualize"; version="4.3.0"; sha256="1s49sx828f25d4n93mn28xdbc81zflk2sr3h8ffs2mkjr888qd8y"; depends=[]; };
-  visvow = derive2 { name="visvow"; version="0.1.0"; sha256="0nb849m6dqfanqlaqcargw0rlf4ch9v09zmf0zqmxkwcil0w0dka"; depends=[Cairo DT ggplot2 plot3D plyr pracma psych Rdpack readxl shiny shinyBS svglite WriteXLS]; };
+  visvow = derive2 { name="visvow"; version="0.2.0"; sha256="1518vhvhx64k18sf003j5bafhdpkx4m8hahvksgcp2a1n3660l1i"; depends=[Cairo DT ggdendro ggplot2 ggrepel MASS plot3D plyr pracma psych Rdpack readxl Rtsne shiny shinyBS svglite WriteXLS]; };
   vita = derive2 { name="vita"; version="1.0.0"; sha256="114p2lzcr8rn68f0z4kmjdnragqlmi18axda9ma4sbqh8mrmjs9v"; depends=[randomForest Rcpp]; };
   vitality = derive2 { name="vitality"; version="1.3"; sha256="17micfmlksnw167vavvhlk431fm20k74y5ggs47pgz5fwpm854zp"; depends=[]; };
   vkR = derive2 { name="vkR"; version="0.1"; sha256="0rb66am3y009wli8ykl58i02kzm6cdqz5v5d4vvzlbngz8crdkyy"; depends=[httr jsonlite XML]; };
@@ -12453,13 +13008,13 @@ in with self; {
   vortexRdata = derive2 { name="vortexRdata"; version="1.0.3"; sha256="1pq910xaqk6d5amg8hj7xagb5wn2ahfrmqairf3vhwqx55lhjbg1"; depends=[]; };
   vosonSML = derive2 { name="vosonSML"; version="0.23.4"; sha256="0y2jyrkld02ksn2ipkkxzc724dhbqbja120gg7sm67v6x444pma7"; depends=[bitops data_table Hmisc httpuv httr igraph instaR plyr RCurl Rfacebook rjson stringr tm twitteR]; };
   vote = derive2 { name="vote"; version="1.1-0"; sha256="1kxbv4062g4x9vn4gh74c6zwdshysw5n7vx9qljhq2wrdnqzjpyg"; depends=[formattable knitr]; };
-  voteogram = derive2 { name="voteogram"; version="0.2.0"; sha256="0m4j7iz7mc6z536vk0kmqfd8ank87ingv5vnjl7mn62r53c5fbsf"; depends=[dplyr ggplot2 jsonlite scales]; };
+  voteogram = derive2 { name="voteogram"; version="0.3.1"; sha256="12xv0c3g4vr23c8adkk8z7m7sx31w5mjvdg9h4qbvaimb99p2r7z"; depends=[dplyr ggplot2 jsonlite scales]; };
   votesys = derive2 { name="votesys"; version="0.1.1"; sha256="1z7cx3rj3bfrkb6jkmf1m1wad5ff46zrab5vhk69wf3jbwd9h920"; depends=[data_table gtools Matrix]; };
   vottrans = derive2 { name="vottrans"; version="1.0"; sha256="1fp7jrw072ws39bqsg88bm2qndcv68aa2vdqwgnza58p1dfq3x9f"; depends=[quadprog]; };
   vowels = derive2 { name="vowels"; version="1.2-2"; sha256="0xhfn3avx9h6kg3jwd47n2x7w8q8c9h13wsxd74hhbbn2gkjrs84"; depends=[]; };
   vows = derive2 { name="vows"; version="0.5"; sha256="06akjdbab9v7r47di7syvcm7gf4k81djizg8maszs5l1ksyhmv6b"; depends=[fda gamm4 mgcv oro_nifti RLRsim shape stringr]; };
   voxel = derive2 { name="voxel"; version="1.3.5"; sha256="1xlym8xc22dq67h0lylrr16z7b4zdidpgrkvbs7n9fnkh6vijw2j"; depends=[gamm4 ggplot2 lmerTest mgcv oro_nifti purrr]; };
-  vpc = derive2 { name="vpc"; version="1.0.1"; sha256="0zxiakls7wi0278f6v74xdcaw500am8gfs8lp7cciaxnw2clvsbv"; depends=[classInt dplyr ggplot2 MASS readr reshape2 survival]; };
+  vpc = derive2 { name="vpc"; version="1.1.0"; sha256="15ws6zfizyryn3bvjvs053n81k2g9k641dqmwvgy152bsg7w7fwx"; depends=[classInt dplyr ggplot2 MASS readr reshape2 survival]; };
   vqtl = derive2 { name="vqtl"; version="2.0.4"; sha256="1jp7h2afnfgn8i65qg64lwbjw56s37w8fgwfajcgxn2mwb5z0jcb"; depends=[dglm doParallel dplyr evd foreach ggplot2 gtools iterators knitr lazyeval purrr qtl stringr testthat tidyr]; };
   vrcp = derive2 { name="vrcp"; version="0.1.1"; sha256="1wrch1dqy752gkj24h1dgi2x3kf1797xj4pf1s9mszf3x3ic905d"; depends=[ggplot2]; };
   vrmlgen = derive2 { name="vrmlgen"; version="1.4.9"; sha256="0lifhhf41yml4k83wpkssl14jgn8jaw1lcknwbci1sd8s1c4478l"; depends=[]; };
@@ -12467,7 +13022,7 @@ in with self; {
   vscc = derive2 { name="vscc"; version="0.2"; sha256="1p14v8vd8kckd44g4dvzh51gdkd8jvsc4bkd2i4csx8vjiwrni5w"; depends=[mclust teigen]; };
   vsgoftest = derive2 { name="vsgoftest"; version="0.3-2"; sha256="020kghcfv8h0i7fzq3p2grhhbwvqmc9ya9r7lc1kiqg1bfgljg91"; depends=[fitdistrplus Rcpp]; };
   vstsr = derive2 { name="vstsr"; version="1.0.0"; sha256="0flsw5yw1vmj5x866klxmjqz5aimkvjiwl1zdciz63p9zffmb4gz"; depends=[httr jsonlite magrittr R6 RCurl xml2]; };
-  vtreat = derive2 { name="vtreat"; version="1.2.2"; sha256="06r8ib4l3cyxrx8ykkvjj7ycrjsrv5d5y0lm6zj12lc9l298zj49"; depends=[wrapr]; };
+  vtreat = derive2 { name="vtreat"; version="1.3.1"; sha256="00iwxfn42zanhs2bwk73731nzwzpjwb127dig91dqhdsvng9585s"; depends=[wrapr]; };
   vudc = derive2 { name="vudc"; version="1.1"; sha256="0zxz6n3ixa3xjzcinky8ymqjx9w8y8z65mz8d84dl00mxzkmkz4h"; depends=[]; };
   vwr = derive2 { name="vwr"; version="0.3.0"; sha256="1h790vjcdfngs1siwldvqz8jrxpkajl3266lzadfnmchfan1x7xv"; depends=[lattice latticeExtra stringdist]; };
   wBoot = derive2 { name="wBoot"; version="1.0.3"; sha256="08qgkkv6jvqmxq5gvfp7jbrc3k8mxajfww7k8a3p8888aq411p7q"; depends=[boot simpleboot]; };
@@ -12476,24 +13031,25 @@ in with self; {
   wNNSel = derive2 { name="wNNSel"; version="0.1"; sha256="19j2yz6lvkxpmjr0vv6pjc7j1c02y0hb3gay5sy1y0xk706aggb5"; depends=[]; };
   wPerm = derive2 { name="wPerm"; version="1.0.1"; sha256="0f3v0kba87wkwyii0pzvs6a8ja897aifpvwkvryl2hzxxxaml7z4"; depends=[]; };
   wSVM = derive2 { name="wSVM"; version="0.1-7"; sha256="0c7rblzgagwfb8mmddkc0nd0f9rv6kapw8znpwapv3fv0j2qzq7h"; depends=[MASS quadprog]; };
-  wTO = derive2 { name="wTO"; version="1.6.1"; sha256="0iw5vg3qpjgyx6n2p10a2ma9dpcm1hchvrm2brh1a0j1xmjwpsrl"; depends=[data_table igraph magrittr plyr reshape2 shiny som visNetwork]; };
+  wTO = derive2 { name="wTO"; version="1.6.2"; sha256="04393rwl74m8qj89kcsnyayvhwkf9bynga33pc09spvjnpnfjj14"; depends=[data_table igraph magrittr plyr reshape2 shiny som visNetwork]; };
   waccR = derive2 { name="waccR"; version="0.1.0"; sha256="092p1bibyqx1gcrch68l9ilzilg5aqf46b6iagm562292cfi074l"; depends=[dplyr lubridate magrittr rvest tibble xml2]; };
   waffect = derive2 { name="waffect"; version="1.2"; sha256="0r5dvm0ggyxyv81hxdr1an658wkqkhqq2xaqzqpnh4sh4wbak35a"; depends=[Rcpp]; };
   waffle = derive2 { name="waffle"; version="0.7.0"; sha256="1qjmai33p96cyavi9lgi6k30h6fj7db5sr569v9jf4kwx92c61df"; depends=[extrafont ggplot2 gridExtra gtable RColorBrewer]; };
   wahc = derive2 { name="wahc"; version="1.0"; sha256="1324xhajgmxq6dxzpnkcvxdpm2m3g47drhyb2b3h227cn3aakxyg"; depends=[]; };
   wakefield = derive2 { name="wakefield"; version="0.3.3"; sha256="05z9a6g1cdavalp50wss7klnlcdbv3y1jvz1v8ry1x2bziy216y2"; depends=[chron dplyr ggplot2 stringi]; };
   walkalytics = derive2 { name="walkalytics"; version="0.1.0"; sha256="1kl6kwwnl67d45akna01xp389wjxsxlc84l0bcpadbipsqyb3kd1"; depends=[base64enc dplyr httr purrr sp stringr tibble]; };
-  walker = derive2 { name="walker"; version="0.2.1"; sha256="1q99nny7mdh7wc3yj4dz0s2454aqyxjcsp5hpjrha14h4p3fcirf"; depends=[bayesplot BH dplyr ggplot2 KFAS Rcpp RcppArmadillo RcppEigen rstan StanHeaders]; };
+  walker = derive2 { name="walker"; version="0.2.3"; sha256="0wnrqlkv6nrl2mb3pxmvv1fahx0vv4jcr86lhxhwgvjgff50idfl"; depends=[bayesplot BH dplyr ggplot2 KFAS Rcpp RcppArmadillo RcppEigen rstan StanHeaders]; };
   walkr = derive2 { name="walkr"; version="0.3.4"; sha256="01278hfa9mppwqmr54826gb65pswhqbh7ai8ij6m4ncc0fk6pvvd"; depends=[ggplot2 hitandrun limSolve MASS Rcpp RcppEigen shinystan]; };
   walkscoreAPI = derive2 { name="walkscoreAPI"; version="1.2"; sha256="1c2gfkl5yl3mkviah8s8zjnqk6lnzma1yilxgfxckdh5wywi39fx"; depends=[]; };
-  wallace = derive2 { name="wallace"; version="1.0.5"; sha256="1c3ghc5prkw44sq93klj1cfgllsz3830y78i4b1y6r23bj2z9520"; depends=[dismo dplyr DT ENMeval leaflet leaflet_extras magrittr maptools raster RColorBrewer rgdal rgeos rmarkdown shiny shinyjs shinythemes spocc spThin testthat XML]; };
+  wallace = derive2 { name="wallace"; version="1.0.6"; sha256="0pnkwdfmimnvyygbz1iz1b9fhcdi7k53wjw44kmnr2b7ln9pbcl2"; depends=[dismo dplyr DT ENMeval leaflet leaflet_extras magrittr maptools raster RColorBrewer rgdal rgeos rmarkdown shiny shinyjs shinythemes spocc spThin XML zip]; };
   wally = derive2 { name="wally"; version="1.0.9"; sha256="1g6dywny8s8fpdnfvrlbzsp9d9dhxdxrm1j4dd3b9r6rpiajf964"; depends=[data_table prodlim riskRegression]; };
   walmartAPI = derive2 { name="walmartAPI"; version="0.1.5"; sha256="1nng8izncj2nmmpywn1ggpzvjh8q7y3q6260qhy9kbmvrrl26spf"; depends=[dplyr glue httr magrittr purrr stringr tibble]; };
   walrus = derive2 { name="walrus"; version="1.0.3"; sha256="1nk2glcvy4hyksl5ipq2mz8jy4fss90hx6cq98m3w96kzjni6jjj"; depends=[ggplot2 jmvcore R6 WRS2]; };
   wand = derive2 { name="wand"; version="0.2.0"; sha256="1p2r96nyr36jv418xi4j2ldarymb4xmpis6d2iz7mq9755kb4fnh"; depends=[dplyr purrr rappdirs Rcpp stringi tibble tidyr]; };
-  warbleR = derive2 { name="warbleR"; version="1.1.14"; sha256="0wr0m950y404chh8gipx1v5mvldypm0iwyiqn4ypz5143fzlhwih"; depends=[bitops dtw fftw iterators jpeg maps monitoR NatureSounds pbapply pracma RCurl rjson seewave Sim_DiffProc tuneR]; };
+  warbleR = derive2 { name="warbleR"; version="1.1.15"; sha256="1vd2yvb1crzxbrbfk8iv31ir09xc646m8glfgqkgazhnj0y6l6yr"; depends=[bioacoustics bitops dtw fftw iterators jpeg maps monitoR NatureSounds pbapply pracma RCurl rjson seewave Sim_DiffProc soundgen tuneR]; };
   warpMix = derive2 { name="warpMix"; version="0.1.0"; sha256="13zbl4aifhg7j5b3vpwgzgs09hr7yblz0rckmj5qh40s78j8cpfn"; depends=[fda fields lme4 MASS nlme reshape2]; };
   washdata = derive2 { name="washdata"; version="0.1.2"; sha256="01cnlhymh3qg9c7fda8s6lvm4j2vklmb72dfk17sn4p0kkikf9m8"; depends=[]; };
+  washeR = derive2 { name="washeR"; version="0.1.2"; sha256="0sb5sgwf7y9sd291qfj1az3x6h6gmznnnsdmqizkmv2xz9029rxz"; depends=[gplots]; };
   wasim = derive2 { name="wasim"; version="1.1.2"; sha256="1zydzw7cihhdwv0474fnc4lgaq5fwrv8jinz79vkbidbgcy7i2fd"; depends=[fast MASS qualV tiger]; };
   water = derive2 { name="water"; version="0.8"; sha256="0qglf922dlgi41jzz3sivq7ckmzl8axqjfg4klcgnddycmm3ha5j"; depends=[raster rgdal sp]; };
   waterData = derive2 { name="waterData"; version="1.0.8"; sha256="0884agh876wf3qlbc75fbaa47x2iwvncz7r2l25qw34n8lxq1yr6"; depends=[dataRetrieval lattice latticeExtra lubridate xml2]; };
@@ -12511,33 +13067,35 @@ in with self; {
   wbstats = derive2 { name="wbstats"; version="0.2"; sha256="0rfc9c6892jq7y17dwp6vsn62ggnac964xndmxq3mip6k2pk8yi0"; depends=[httr jsonlite tidyr]; };
   wbsts = derive2 { name="wbsts"; version="2.0"; sha256="12k68nsrrxglrm9ik53rm8160xvjlsgzi7v4wp78jhmh2slmyxw3"; depends=[mvtnorm Rcpp wmtsa]; };
   wdm = derive2 { name="wdm"; version="0.1.1"; sha256="0mr901l2378dyygdhc5agx93lm46a44fs3kr3ax2wnv1cdhmc379"; depends=[Rcpp]; };
-  weathercan = derive2 { name="weathercan"; version="0.2.7"; sha256="09465l1gy349vgnpasxazp3i5x82hld8k06ba6556k4r9jypx08v"; depends=[dplyr httr lubridate purrr stringi tidyr xml2]; };
+  wdman = derive2 { name="wdman"; version="0.2.4"; sha256="00q9qk8qgz7fjbd9j8pxknrw8lk1ardifg8w4agyrk8r4q56b1a0"; depends=[assertthat binman semver subprocess yaml]; };
+  weathercan = derive2 { name="weathercan"; version="0.2.8"; sha256="1hspjij4rhlnl3k1hidpa9sclml95q9igwf9dsy0kihlsl0g35h1"; depends=[dplyr httr lubridate purrr rlang stringi tidyr xml2]; };
   weathermetrics = derive2 { name="weathermetrics"; version="1.2.2"; sha256="1hjhgsy3v8328hv4czxxz7kp68sxc10sy10f3dv5j8f6pka6qlsp"; depends=[]; };
   weatherr = derive2 { name="weatherr"; version="0.1.2"; sha256="11sb5bmqccqkvlabsw4siy9n6ivsrvxavywvaffgrs3blmnygql9"; depends=[ggmap lubridate RJSONIO XML]; };
-  webTRISr = derive2 { name="webTRISr"; version="0.1.0"; sha256="19xal5zg9mg25vzvkz55zm6gkd8b0y3sw3zbbrxn73a1jg8x5v0l"; depends=[dplyr httr jsonlite lubridate magrittr purrr readr stringr]; };
+  webTRISr = derive2 { name="webTRISr"; version="0.1.1"; sha256="044a079fj4ryykj2n8zlfipmjyrfyfvhrqcd1wbb6r440yjkvali"; depends=[dplyr httr jsonlite lubridate magrittr purrr readr stringr]; };
   webchem = derive2 { name="webchem"; version="0.4.0"; sha256="032bsfnkn7s33y42fyf8yradsh8jhms4ryjkh0r76hqnx3j00ph0"; depends=[httr jsonlite RCurl rvest stringr xml2]; };
   webdriver = derive2 { name="webdriver"; version="1.0.5"; sha256="0l3nz7gf62jlkvkn5sfxfvn0prxz3ds7nlpfb1yhnmdljhbzrgzf"; depends=[base64enc callr curl debugme httr jsonlite R6 showimage withr]; };
   webglobe = derive2 { name="webglobe"; version="1.0.2"; sha256="1277d6fkgrgixlhikfwf0r6z8g5b7mah905xi219qsfycxmifgn9"; depends=[geojsonio httpuv jsonlite]; };
-  webmockr = derive2 { name="webmockr"; version="0.2.6"; sha256="00akqj7lw3hvwxllnn48zpq5wk70bbr4ghzilh6064jwkk365c8v"; depends=[crul curl fauxpas jsonlite lazyeval magrittr R6 urltools]; };
+  webmockr = derive2 { name="webmockr"; version="0.2.8"; sha256="03744y89d1cklidd5lyqw23yaz71yyv6w8gk5qqibg2alq58gcn8"; depends=[crul curl fauxpas jsonlite lazyeval magrittr R6 urltools]; };
   webp = derive2 { name="webp"; version="0.4"; sha256="0jsyjynrsrqpbg93rn48xrjclkvwmz2c2lhcfli5djny122ymh6r"; depends=[]; };
   webr = derive2 { name="webr"; version="0.1.0"; sha256="0fjbk933034cgmqd41cw7q5xcvrwgylcic6lxav9jv3b2sspzw06"; depends=[ggplot2 moonBook stringr]; };
   webreadr = derive2 { name="webreadr"; version="0.4.0"; sha256="0l3l5g4zj5faxqi1kqwx9lq91gbj40z2q3csrsmpal08qnwkxs90"; depends=[Rcpp readr]; };
-  websearchr = derive2 { name="websearchr"; version="0.0.2"; sha256="1yf8ch86khg5syppcxs94mxgc3i5623qyhzh174nssw1wzyqb9ba"; depends=[]; };
-  webshot = derive2 { name="webshot"; version="0.5.0"; sha256="07r71zzmggp4jf92x4ws4wg6v1x98vaj01lsar85bnb30n5vx8gh"; depends=[jsonlite magrittr processx withr]; };
-  webuse = derive2 { name="webuse"; version="0.1.2"; sha256="0ks3pb9ir778j9x4l0s4ly2xa1jc9syddqm65wkck52q3lrarg3l"; depends=[haven]; };
+  websearchr = derive2 { name="websearchr"; version="0.0.3"; sha256="1c6dwm5g5rjq0b12zrwwi5k9760jb0ph83v4j2gm8zm0x9dhiqm9"; depends=[]; };
+  webshot = derive2 { name="webshot"; version="0.5.1"; sha256="08sb1xi376pfy1vwilk2d68zljsg9yiv04n2dkqz383gdhh0sxdr"; depends=[callr jsonlite magrittr]; };
+  webuse = derive2 { name="webuse"; version="0.1.3"; sha256="09xvw0v991cq1ck2kfxblp5cngfh9j6swvh5xv420mvky0kshv32"; depends=[haven]; };
   webutils = derive2 { name="webutils"; version="0.6"; sha256="1basl7q2m8y9nw5ksi1kdz6an9pybvsmdd4snrm7a37041xymnps"; depends=[curl jsonlite]; };
   wec = derive2 { name="wec"; version="0.4-1"; sha256="10lqh43536d44d6082rpp11q1323pmjbmgrgb8v9mrk9c1ysf50w"; depends=[dplyr]; };
   weco = derive2 { name="weco"; version="1.2"; sha256="1prk8hn782pd8g2rbbaj7y10vjimqs9n8i4rab6aw6fc3k759d6b"; depends=[]; };
   weibullness = derive2 { name="weibullness"; version="1.18.6"; sha256="046fs6b5yb6ckddcb9vplc5478c7xprnafsj4rvzb1gmcpcrqqck"; depends=[]; };
+  weibulltools = derive2 { name="weibulltools"; version="0.5.4"; sha256="0xxqcvxd489qhdais7f2xnscz8bfcsl4k1qggl35v65bn7bm7hjw"; depends=[dplyr magrittr plotly Rcpp sandwich segmented SPREDA survival]; };
   weightTAPSPACK = derive2 { name="weightTAPSPACK"; version="0.1"; sha256="0kpfw477qka5qrc6sh73had38xbrwrqp1yv0dj2qiihkiyrp67ks"; depends=[HotDeckImputation mice plyr survey]; };
   weightedScores = derive2 { name="weightedScores"; version="0.9.5.1"; sha256="118hzwaarcb8pk2zz83m6zzzndlpbbzb7gz87vc7zggpa998k1gr"; depends=[mvtnorm rootSolve]; };
   weightr = derive2 { name="weightr"; version="1.1.2"; sha256="13wy7ygx7khbmymg2r0rr6mrl4lbapf5bnnq1rq8izl38sjk7csx"; depends=[]; };
-  weights = derive2 { name="weights"; version="0.90"; sha256="0wgh2nb2y0xr20y6ig9mric34zhwpndb71ddpbrf5sjqg3hijj96"; depends=[gdata Hmisc mice]; };
+  weights = derive2 { name="weights"; version="1.0"; sha256="0186bfpkhxngrshac6bpg37alp6slwhwd43inrm8hqg0vhpfgc4c"; depends=[gdata Hmisc mice]; };
   weirs = derive2 { name="weirs"; version="0.25"; sha256="17a0ppi7ghikrwn39zvhg2cvhmnr3w0qi7r9lj22x65ii9nzadd7"; depends=[]; };
   welchADF = derive2 { name="welchADF"; version="0.3"; sha256="0k2di5fwh5jv87mw4bjnhbk2rmhf2v2f5ksjr5dgnyhnawwxqq97"; depends=[lme4]; };
   wellknown = derive2 { name="wellknown"; version="0.5.0"; sha256="1y3hi5ajqaxx3s40cx24ayfcd3c6d1ydlhsm0gg2fxgmidm6bhwy"; depends=[jsonlite V8]; };
   wesanderson = derive2 { name="wesanderson"; version="0.3.6"; sha256="09mr6p2jmqdjq27cz974w5hyxgn929zp9z3inhxqmmh1582fmdi2"; depends=[]; };
-  wevid = derive2 { name="wevid"; version="0.4.2"; sha256="0d771r3xrd7nwnpwnhzqaqybimjg0gaikqqagbf483x423ijfdny"; depends=[ggplot2 pROC reshape2 zoo]; };
+  wevid = derive2 { name="wevid"; version="0.5.1"; sha256="1dw4ypdmhnvwv89ydjbl2jbaf6913gx966qvcbm82apvjbb624vy"; depends=[ggplot2 pROC reshape2 zoo]; };
   wfe = derive2 { name="wfe"; version="1.6"; sha256="0y8f042hzlqwgsr63rl2apl7hkw9bs69a287dynvz9w078am61ch"; depends=[arm MASS Matrix]; };
   wfg = derive2 { name="wfg"; version="0.1"; sha256="1r6wb8v42mpapjfhmkmghm9fq21c3s4zmdxy8nlh31nsja71c37d"; depends=[igraph]; };
   wfindr = derive2 { name="wfindr"; version="0.1.0"; sha256="0m5xj50hqdjj4lpbgx1kp3my4njr0nz09hd63rf4qf1ls8r7zil9"; depends=[dplyr magrittr]; };
@@ -12546,8 +13104,9 @@ in with self; {
   wheatmap = derive2 { name="wheatmap"; version="0.1.0"; sha256="1c1xvzy194vw3idkwkqp9kyrfldzczj30cl15jw1bbnw87zcwdzy"; depends=[colorspace RColorBrewer]; };
   whereport = derive2 { name="whereport"; version="0.1"; sha256="1gdqzr2hrnpxbwl7cfps4m3xja8wkgwfs50i2nailybympvdnxm4"; depends=[dplyr]; };
   whisker = derive2 { name="whisker"; version="0.3-2"; sha256="0z4cn115gxcl086d6bnqr8afi67b6a7xqg6ivmk3l4ng1x8kcj28"; depends=[]; };
-  whitening = derive2 { name="whitening"; version="1.0.0"; sha256="0vncjbrw9gafplz6r02x0j1fnrfvxq027h1pqcbdwqykjzg0zcym"; depends=[corpcor]; };
-  whoami = derive2 { name="whoami"; version="1.1.2"; sha256="1wkgh8mxm2ci5ylwppbh38sx5fm5rsm06bimdpc07z35bz4825xg"; depends=[httr jsonlite]; };
+  whitechapelR = derive2 { name="whitechapelR"; version="0.3.0"; sha256="0mnq5m59mw8w5g1p0h2xzlz738j397b3444km59bm5yln3j0nsbi"; depends=[igraph plyr]; };
+  whitening = derive2 { name="whitening"; version="1.1.0"; sha256="19p0l2vim9nc1m381v9m3icg238n1xamvwz3v2v00sb1fan9nr9s"; depends=[corpcor]; };
+  whoami = derive2 { name="whoami"; version="1.2.0"; sha256="1b1zvbvmyh979fq72qa5k83888wpfr44l0qjz0pgdlad1li0nfnc"; depends=[httr jsonlite]; };
   whoapi = derive2 { name="whoapi"; version="0.1.2"; sha256="0ib0an08xsxan24q8mb5ai375njmkdc61lh4321rzgr25iqvi682"; depends=[httr]; };
   wicket = derive2 { name="wicket"; version="0.4.0"; sha256="1lizzmj69bswzlk18fv2v4yxxc6dynvmkymdiafznzcyyz4a8xnf"; depends=[BH Rcpp]; };
   widals = derive2 { name="widals"; version="0.5.4"; sha256="1bl59s1r4gkvq4nkf94fk7m0zvhbrszkgmig66lfxhyvk9r84fvb"; depends=[snowfall]; };
@@ -12557,10 +13116,12 @@ in with self; {
   wikibooks = derive2 { name="wikibooks"; version="0.2"; sha256="178lhri1b8if2j7y7l9kqgyvmkn4z0bxp5l4dmm97x3pav98c7ks"; depends=[]; };
   wikilake = derive2 { name="wikilake"; version="0.4"; sha256="0pm0brzkf2k6aknwl4b3fba5ly7mhah8qfb0h94fckiaqbnpyx9v"; depends=[maps rvest selectr sp stringi stringr units WikipediR xml2]; };
   wikipediatrend = derive2 { name="wikipediatrend"; version="1.1.14"; sha256="00i38py9n4l0iqkn3257a3jbiwh3hrmx1p9x6rfh9sgfcch8yyj5"; depends=[hellno httr jsonlite RColorBrewer rvest stringr xml2]; };
-  wikitaxa = derive2 { name="wikitaxa"; version="0.2.0"; sha256="06ccb1ix5lsz3jgr3aq2ywq9bdnz020sa5dzlq1ayw95gdqj6icl"; depends=[crul curl data_table jsonlite tibble WikidataR xml2]; };
+  wikisourcer = derive2 { name="wikisourcer"; version="0.1.1"; sha256="03n813w281y6zk0xl248jdis6jr10dgpax7lcmx8av18dipssf1d"; depends=[dplyr purrr rvest stringr urltools xml2]; };
+  wikitaxa = derive2 { name="wikitaxa"; version="0.3.0"; sha256="0v681qac33dlcdlah20qf5qb9g5h917rpzv67brx1handjnapnqh"; depends=[crul curl data_table jsonlite tibble WikidataR xml2]; };
   wildcard = derive2 { name="wildcard"; version="1.1.0"; sha256="0qkzab84z95g5f4fv3v4wisccgd7k9m3210pz4nvm1x8rfaqfjf1"; depends=[magrittr stringi]; };
   wildlifeDI = derive2 { name="wildlifeDI"; version="0.2"; sha256="0z8zyrl3d73x2j32l6xqz5nwhygzy7c9sjfp6bql5acyfvn7ngjv"; depends=[adehabitatLT rgeos sp]; };
   wildpoker = derive2 { name="wildpoker"; version="1.1"; sha256="1302ain55spz34irmq49sp9b1pvrn2nxmzmqs8m9wdk6g82h3s27"; depends=[]; };
+  wilson = derive2 { name="wilson"; version="2.0.2"; sha256="0ivd3cm6swhbcg38f66505rwf8h19wcg69mf3p4f9vjif8l13q4s"; depends=[circlize colourpicker ComplexHeatmap data_table DESeq2 DT factoextra FactoMineR ggplot2 ggrepel gplots heatmaply log4r openssl plotly plyr R6 RColorBrewer reshape rintrojs rje rjson RJSONIO scales shiny shinycssloaders shinydashboard shinyjs viridis]; };
   winRatioAnalysis = derive2 { name="winRatioAnalysis"; version="0.1.0"; sha256="1msvc06bfzw9clinxbvr5fdw38dff0c0xii46182nwnk5kj0libr"; depends=[data_table JM Matrix MLEcens mvtnorm nlme plyr pssm survival]; };
   windex = derive2 { name="windex"; version="1.0"; sha256="0ci10x6mm5i03j05fyadxa0ic0ngpyp5nsn05p9m7v1is5jhxci0"; depends=[ape geiger scatterplot3d]; };
   windfarmGA = derive2 { name="windfarmGA"; version="1.2.1"; sha256="1v4brwi92a2kchak43z0vxjq11373amh190fnmpmnpz58zbls448"; depends=[calibrate data_table doParallel dplyr foreach geoR ggplot2 googleVis gstat gtools leaflet magrittr maptools RandomFields raster RColorBrewer rgdal rgeos rgl RgoogleMaps sp spatstat]; };
@@ -12576,22 +13137,22 @@ in with self; {
   wnl = derive2 { name="wnl"; version="0.4.1"; sha256="0gr0jf549nmavlzra6b1jg9306chl2l5qivizn5xkkcf8hmq5rm6"; depends=[numDeriv]; };
   wnominate = derive2 { name="wnominate"; version="1.2.5"; sha256="0pvw36jzx90z7ah4f7cyf95csdn5x7n9rh3ddsppa61y1dmjsn5k"; depends=[pscl]; };
   woe = derive2 { name="woe"; version="0.2"; sha256="15mvcmwnrqxpzn054lq85vyzq5rgxkiwbd40gnn4s3ny1xdrwgsm"; depends=[]; };
-  woeBinning = derive2 { name="woeBinning"; version="0.1.5"; sha256="04pw32vng31v1n4r1g1fisvv8cacxmcx7m65vw4a2byamp2d25yq"; depends=[]; };
+  woeBinning = derive2 { name="woeBinning"; version="0.1.6"; sha256="0x890h5fh59n54587adyzphr956fkg3px8i7c378aq1fs7k35gxs"; depends=[]; };
   woeR = derive2 { name="woeR"; version="0.1.3"; sha256="15bdhgjq39svzaqzmfykyaq4r543lq15jf0sz8m9bwjv2c6vlx5l"; depends=[dplyr]; };
   womblR = derive2 { name="womblR"; version="1.0.3"; sha256="0g8r98lfycvsaii3zczr55pah5ffqrpinbrax41yp62w6hzgkq9b"; depends=[msm mvtnorm Rcpp RcppArmadillo]; };
-  wooldridge = derive2 { name="wooldridge"; version="1.3.0"; sha256="029vdiglwkr7ilr7jvzarvphcc71n1majn6bh427b4qq7n01a7wb"; depends=[]; };
+  wooldridge = derive2 { name="wooldridge"; version="1.3.1"; sha256="0471x3vszf1c4fj9pk5ix8bdmp2bnq1ghnqvwzad9chvvkpzmg3l"; depends=[]; };
   word_alignment = derive2 { name="word.alignment"; version="1.0.9"; sha256="02dy4a9agfb99rjbqxy35nf11bpxyjcq15bnyzjkbvcy0ppfgz0l"; depends=[data_table openxlsx quanteda]; };
   wordbankr = derive2 { name="wordbankr"; version="0.3.0"; sha256="0aa1gz3fg7h9wnk93ialwj0wjyk8wxani8galwkrms4fp7d5lmf4"; depends=[assertthat DBI dbplyr dplyr purrr rlang RMySQL robustbase stringr tidyr]; };
-  wordcloud = derive2 { name="wordcloud"; version="2.5"; sha256="1ajqdkm8h1wid3d41zd8v7xzf2swid998w31zrghd45a5lcp7qcm"; depends=[RColorBrewer Rcpp slam]; };
+  wordcloud = derive2 { name="wordcloud"; version="2.6"; sha256="0j96yyvm6bcrrpbdx4w26piqx44a0vbsr3px9cb4zk8a8da6jwak"; depends=[RColorBrewer Rcpp]; };
   wordcloud2 = derive2 { name="wordcloud2"; version="0.2.1"; sha256="1a2q42bn65q4idxq0vxysyam16q6c18inxv4dqhfy0x52j8z9x6k"; depends=[base64enc htmlwidgets]; };
   wordmatch = derive2 { name="wordmatch"; version="1.0"; sha256="0zscp361qf79y1zsliga18hc7wj36cnydshrqb9pv67b65njrznz"; depends=[plyr reshape2]; };
   wordnet = derive2 { name="wordnet"; version="0.1-14"; sha256="12a21zlc7h973gi1632gngbk8b09vhp3sldh1mh9b5n6h18ga25p"; depends=[rJava]; };
   wordspace = derive2 { name="wordspace"; version="0.2-0"; sha256="0rrnbimf68ax1qxsyn7g0kd76abijzxg5i11h93l0fnzi2g2a9xn"; depends=[cluster iotools MASS Matrix Rcpp sparsesvd]; };
-  workflowr = derive2 { name="workflowr"; version="1.1.0"; sha256="0vpnrldn798g3hcf1i30l5306259idbn5h3s23hjx3vxqjznss7f"; depends=[callr getPass git2r glue knitr R_utils rmarkdown rprojroot rstudioapi stringr whisker yaml]; };
+  workflowr = derive2 { name="workflowr"; version="1.1.1"; sha256="0qkppim5b6kb5jf0xmgaqpzhyxdcg5qfbmy3vafi5w4yw08q23q2"; depends=[callr getPass git2r glue knitr R_utils rmarkdown rprojroot rstudioapi stringr whisker yaml]; };
   worldmet = derive2 { name="worldmet"; version="0.8.4"; sha256="15crnmlcj1yi9rm35n8f34jprms24r2xwx550zz627bdvq4vmam4"; depends=[doParallel dplyr foreach leaflet openair readr zoo]; };
   worms = derive2 { name="worms"; version="0.2.2"; sha256="183chjdi5qvsmdznvc9igcxaz769a37rwh5nzgvf5zf012a85wir"; depends=[httr plyr]; };
   worrms = derive2 { name="worrms"; version="0.2.8"; sha256="1f25x46b7hzrjz6y8ps29cfl8qa17smxbnrghf3bwhr4qc0vf5k5"; depends=[crul data_table jsonlite tibble]; };
-  wosr = derive2 { name="wosr"; version="0.1.1"; sha256="1jmq4z5myjxww2lz20i70vyvsvjxm1n9ayvxggxvzl28kwhpi5ca"; depends=[httr jsonlite pbapply xml2]; };
+  wosr = derive2 { name="wosr"; version="0.2.0"; sha256="0q8mswxb3w4d9pgc2fi64142i3dad4f2999vr1jvc9n8sjrmmmfc"; depends=[httr jsonlite pbapply xml2]; };
   wpp2008 = derive2 { name="wpp2008"; version="1.0-1"; sha256="0gd3vjw1fpzhp3qlf1jpc24f76i0pxsjs5pb1v3k2si6df7q4msd"; depends=[]; };
   wpp2010 = derive2 { name="wpp2010"; version="1.2-0"; sha256="1h87r1cn4lnx80dprvawsyzfkriscqjgr27gvv7n19wvsx8qd57k"; depends=[]; };
   wpp2012 = derive2 { name="wpp2012"; version="2.2-1"; sha256="00283s4r36zzwn67fydrl7ldg6jhn14qkf47h0ifmsky95bd1n5k"; depends=[]; };
@@ -12601,8 +13162,8 @@ in with self; {
   wql = derive2 { name="wql"; version="0.4.9"; sha256="0m16l807mhcjkbqhlzhc24pw4hl78fjyykiszlg337x3qs803fg2"; depends=[ggplot2 reshape2 zoo]; };
   wqs = derive2 { name="wqs"; version="0.0.1"; sha256="14qaa9g9v4nqrv897laflib3wwhflyfaf9wpllmbi5xfv9223rcg"; depends=[glm2 Rsolnp]; };
   wrangle = derive2 { name="wrangle"; version="0.4"; sha256="0d1xdcvgcv8bn20s90sn1dmzhcdz39yr1m2bkcjbvavm132p96bl"; depends=[dplyr lazyeval magrittr tidyr]; };
-  wrapr = derive2 { name="wrapr"; version="1.5.0"; sha256="1r3h4h9vd0j4pbxh72557vqhdm1b79d35ialxr5919afx0nw1sg8"; depends=[]; };
-  wrassp = derive2 { name="wrassp"; version="0.1.7"; sha256="0wbgrpxp4ck8cpfnv6n5lf04ga12gn8cm3rm5jj32gcm4gvdvzjl"; depends=[]; };
+  wrapr = derive2 { name="wrapr"; version="1.6.3"; sha256="0qvlyj3wnvy6wxdnkb49c7a16v14xkk5zb9bw27w06p9iikc66i0"; depends=[]; };
+  wrassp = derive2 { name="wrassp"; version="0.1.8"; sha256="052x0lxpchr6f97yfj3vmhh8gc8qg5pp1m91h5akrav4yfawbs7k"; depends=[]; };
   write_snns = derive2 { name="write.snns"; version="0.0-4.2"; sha256="0sxg7z8rnh4lssbivkrfxldv4ivy37wkndzzndpbvq2gbvbjnp4l"; depends=[]; };
   writexl = derive2 { name="writexl"; version="1.0"; sha256="0r2v12dc4zqmr1agp6vbw0fc48i278018684x84psjjqfmnv14cf"; depends=[]; };
   wrspathrow = derive2 { name="wrspathrow"; version="0.1"; sha256="1xkh12aal85qhk8d0pdj2qbi6pp4jnr6zbxkhdw2zwav57ly3f4i"; depends=[raster rgdal rgeos sp wrspathrowData]; };
@@ -12613,7 +13174,7 @@ in with self; {
   wskm = derive2 { name="wskm"; version="1.4.28"; sha256="0d9hcriakg6fxzc8wjsahc4zkyjza31mb9dv2h4xcf8298xa96i4"; depends=[clv lattice latticeExtra]; };
   wsrf = derive2 { name="wsrf"; version="1.7.17"; sha256="0gmlvfcy2iqa5sqhwps3hx0hl9fir8nf5xq62f25sn8i3llw752z"; depends=[Rcpp]; };
   wtest = derive2 { name="wtest"; version="3.1"; sha256="1rlas9jn57mcyjic9dhkqj355djldc95q07b076w847cd4pmzqvb"; depends=[]; };
-  wtss = derive2 { name="wtss"; version="1.0.0"; sha256="041686mnhqcljxm3ska35mslpq30ah47anvnmrgnkx5y05pwa8pj"; depends=[jsonlite lubridate RCurl roxygen2 zoo]; };
+  wtss = derive2 { name="wtss"; version="1.1.0"; sha256="019zvmq4z5xy5dwcf4g0z43x2mb14d1lgqhs1zp6821izffpbd0s"; depends=[jsonlite lubridate RCurl roxygen2 zoo]; };
   wunderscraper = derive2 { name="wunderscraper"; version="0.1.0"; sha256="1h9nhxvs673n2ivw466qm77k20541cwgmmq35iv3dcb3hvw36p0r"; depends=[httr jsonlite sf tigris]; };
   wux = derive2 { name="wux"; version="2.2-1"; sha256="0iw0kf0wfspnpc83v7gxhcakmp0z34cccnm0jn9c2za9ay9l2swv"; depends=[abind class corpcor fields gdata Hmisc ncdf4 reshape rgdal rgeos rworldmap sp stringr]; };
   wvtool = derive2 { name="wvtool"; version="1.0"; sha256="0x9awj6g5lzqp2lhwgh9ib7jmfdzyhwazrjvw1vwacqqfhbz8qxv"; depends=[]; };
@@ -12623,20 +13184,23 @@ in with self; {
   x13binary = derive2 { name="x13binary"; version="1.1.39-1"; sha256="1v6slh5136av3l7bk99a57gj6i6khx2j55qv4pyz1zmrzzgaayyc"; depends=[]; };
   x3ptools = derive2 { name="x3ptools"; version="0.0.1"; sha256="16kms5hbpa5hz5i0pdwx49yp2hmhyr8hd4w672vmwi94s5d84i1q"; depends=[digest rgl xml2 zoo]; };
   xLLiM = derive2 { name="xLLiM"; version="2.1"; sha256="1q6ryw9z5wi0amv5f4drz14p36zy8gc2a0s59q10jixhhyas7ycl"; depends=[abind capushe corpcor igraph MASS Matrix]; };
-  xROI = derive2 { name="xROI"; version="0.1.2"; sha256="01xicw6ffrzs0df69dmylfxxfszqy5j81vba1w1l99h7hxq5a6bs"; depends=[colourpicker data_table jpeg lubridate moments plotly raster RCurl rgdal rjson shiny shinyAce shinyBS shinydashboard shinyFiles shinyjs shinythemes shinyTime sp stringr tiff]; };
-  xSub = derive2 { name="xSub"; version="0.0.1"; sha256="0ccvkdylsia8qkfjlbbyggpy4l8z3r05cmvp4xb3j4628fa82jav"; depends=[countrycode haven RCurl]; };
+  xROI = derive2 { name="xROI"; version="0.9.9"; sha256="10wr1298066mncycmcbgqrpbd3fnd36f8ydrq11mjg0gxcs8m3i8"; depends=[colourpicker data_table jpeg lubridate moments plotly raster RCurl rgdal rjson shiny shinyAce shinyBS shinydashboard shinyFiles shinyjs shinythemes shinyTime sp stringr tiff]; };
+  xRing = derive2 { name="xRing"; version="0.1.0"; sha256="17f1jif8yw2508k86p8mjgw1h20ml5wzaff04ix9xq96plqzi8ma"; depends=[dplR imager tcltk2 tkRplotR]; };
+  xSub = derive2 { name="xSub"; version="2.0.1"; sha256="0pharrgncczdq06f6cspv4is595jrbc0zik0jcps2619khs7b1q8"; depends=[countrycode haven RCurl]; };
   xVA = derive2 { name="xVA"; version="0.8.1"; sha256="0wr4i37sya5gg6v63ka16g9077gxbhvjqyqfaahhban8skzl2adf"; depends=[SACCR Trading]; };
-  xaringan = derive2 { name="xaringan"; version="0.6"; sha256="0jgdixgbkwp9jnvjnrzdmlawz8f24z8in56cma3hn79glbvxfaw4"; depends=[htmltools knitr rmarkdown servr xfun]; };
+  xaringan = derive2 { name="xaringan"; version="0.8"; sha256="05a2x3a8irvj34zvpbnivwi73i2i6hsh63rw56lj0b4y8d8cqgby"; depends=[htmltools knitr rmarkdown servr xfun]; };
   xbreed = derive2 { name="xbreed"; version="1.0.1"; sha256="0grrfra9j0k3mqikmrif5qawh4260ayr40irskzpp9ywsixim63h"; depends=[BGLR]; };
-  xergm = derive2 { name="xergm"; version="1.8.2"; sha256="0rg8b0r27nzjnf0zkwfbkw96439h0b40k1l5lqi5igyr0bm7w0cc"; depends=[btergm GERGM rem tnam xergm_common]; };
+  xdcclarge = derive2 { name="xdcclarge"; version="0.1.0"; sha256="1j8wsidwmfjygqlwavxinv4bqc6rddy42jdmlknsjfrrs49yj8kn"; depends=[nlshrink Rcpp RcppArmadillo]; };
+  xergm = derive2 { name="xergm"; version="1.8.3"; sha256="155469550rsdwszrhw7vdgwz2h0d72a8f4hirrb6hny7f1q63ykk"; depends=[btergm GERGM rem tnam xergm_common]; };
   xergm_common = derive2 { name="xergm.common"; version="1.7.7"; sha256="0nfls8a1knmnjjrrw0q93qsfrrb9p3yqsm5dxp13z0780vrzxvcj"; depends=[ergm network]; };
   xesreadR = derive2 { name="xesreadR"; version="0.2.2"; sha256="1y7iilqdj9jv5snzylihs996hvpcj9s3yaiy7wr20m5yh1ngwkvj"; depends=[bupaR data_table dplyr lubridate purrr stringr tidyr XML xml2]; };
-  xfun = derive2 { name="xfun"; version="0.2"; sha256="0zl22fcw90kdvzkjyf6vbmdmn9rz3bl51522fasvmykypffyng4a"; depends=[]; };
+  xfun = derive2 { name="xfun"; version="0.4"; sha256="0991ywgc2dsraba91kkj37akhfzhzn02cnz7c88hhdis9kag3pwv"; depends=[]; };
   xgboost = derive2 { name="xgboost"; version="0.71.2"; sha256="134q69xbi93ajjlwrp838jgypjdjipmbkzmr31mvc100i9nsr14x"; depends=[data_table magrittr Matrix stringi]; };
   xgobi = derive2 { name="xgobi"; version="1.2-15"; sha256="03ym5mm16rb1bdwrymr393r3xgprp0ign45ryym3g0x2zi8dy557"; depends=[]; };
   xhmmScripts = derive2 { name="xhmmScripts"; version="1.1"; sha256="1qryyb34jx9c64l8bnwp40b08y81agdj5w0icj8dk052x50ip1hl"; depends=[gplots plotrix]; };
-  xkcd = derive2 { name="xkcd"; version="0.0.5"; sha256="1cq4n7w4adj24qq658z15jkqvrn4pd5abxpcsdkzb2cq98m69iis"; depends=[extrafont ggplot2 Hmisc]; };
+  xkcd = derive2 { name="xkcd"; version="0.0.6"; sha256="1z2y0ihn68ppay7xkglhw7djki5654g6z4bbpyy41if57z9q554f"; depends=[extrafont ggplot2 Hmisc]; };
   xkcdcolors = derive2 { name="xkcdcolors"; version="1.0"; sha256="07fnjv01r3b951dqca2zs9b9f6hsgbpbpsrggvb8rps53kpid0i7"; depends=[FNN]; };
+  xlm = derive2 { name="xlm"; version="0.1.1"; sha256="0hr95x3s3gbyj12xb8kvy2kzlmjr2ycdw79r2kfcqvvabd2h41dv"; depends=[data_table httr R6 RJSONIO]; };
   xlsimple = derive2 { name="xlsimple"; version="0.0.1"; sha256="1x0b2pb1sg2sqmh4z03bchsc9fhcphi6mxk4nbb6my2cr0kqrrdq"; depends=[]; };
   xlsx = derive2 { name="xlsx"; version="0.6.1"; sha256="1d58qlzdj4vrk4vnlyzri600ix7z3wnc30gnbcc1qz27nlbbv055"; depends=[rJava xlsxjars]; };
   xlsxjars = derive2 { name="xlsxjars"; version="0.6.1"; sha256="1rka5smm7yqnhhlblpihhciydfap4i6kjaa4a7isdg7qjmzm3h9p"; depends=[rJava]; };
@@ -12644,32 +13208,33 @@ in with self; {
   xlutils3 = derive2 { name="xlutils3"; version="0.1.0"; sha256="1cxishi62bd36zlsy5qhzix1p68akdf9kpjg9gfm9aqpcijzccb9"; depends=[magrittr readxl]; };
   xmeta = derive2 { name="xmeta"; version="1.1-4"; sha256="1y9jldi8qn4jpr05g8fnvb23gig180hh36pc2v4y8n8289s9yvg2"; depends=[aod glmmML metafor mvmeta numDeriv]; };
   xml2 = derive2 { name="xml2"; version="1.2.0"; sha256="154lmksfiwkhnlmryas25mjhfg6k4mmnnk7bbb29mnn5x5pr2yha"; depends=[Rcpp]; };
-  xmlparsedata = derive2 { name="xmlparsedata"; version="1.0.1"; sha256="0q9d4l3p4ypc0qswnjwrd3as9bx9f1niixsc19y1msva51sg5h39"; depends=[]; };
-  xmlrpc2 = derive2 { name="xmlrpc2"; version="1.0"; sha256="1h99z0kmmp5rmyglqwpaan6hbb8kg8q4783kjsyww43fl0l3imd8"; depends=[base64enc curl xml2]; };
-  xmrr = derive2 { name="xmrr"; version="1.0.1"; sha256="0h5861mym7k7xkby6zilcxq8i3yr06kcaam5pzi2y0q85iycb88f"; depends=[dplyr ggplot2 tidyr]; };
+  xmlparsedata = derive2 { name="xmlparsedata"; version="1.0.2"; sha256="1npf4ng9d34k56ib1ac4cb3p2x8gqm3jha1sc25nv6546ahcrcjh"; depends=[]; };
+  xmlrpc2 = derive2 { name="xmlrpc2"; version="1.1"; sha256="13rfw0civp3hzi4hn31x1idliid1qb73495x4c31z5msd35lzxrs"; depends=[base64enc curl xml2]; };
+  xmrr = derive2 { name="xmrr"; version="1.0.36"; sha256="0xxi8z9sp156508y5a7f4ax8yry7lg4qmn0hyk04dn1xr7syd4gs"; depends=[dplyr ggplot2 tidyr]; };
   xoi = derive2 { name="xoi"; version="0.67-4"; sha256="180zzc81d883qzl1xgj88d9aslqmsgdvv8w1mx2613h1rkirkpdp"; depends=[qtl]; };
+  xopen = derive2 { name="xopen"; version="1.0.0"; sha256="1vrvgdika1d63dwygynbv2wmd87ll8dji5dy89hj576n8hw601z2"; depends=[processx]; };
   xplain = derive2 { name="xplain"; version="0.2.1"; sha256="01hl9dxiqqxzdixqccga0sywlhv97pi1l51r9sr7v106s7q11jxn"; depends=[RCurl readr XML]; };
-  xpose = derive2 { name="xpose"; version="0.4.2"; sha256="11k07z76fpp4fvp3kfx1jc7bx1mwc1xfwyp46xwfhgfbazbvyfd7"; depends=[dplyr ggforce ggplot2 purrr readr rlang stringr tibble tidyr vpc]; };
+  xpose = derive2 { name="xpose"; version="0.4.3"; sha256="1h1wx0pyr2l93pc59ybgg124fs1qhwhhyarafmh4s9b0ps0a451c"; depends=[dplyr ggforce ggplot2 purrr readr rlang stringr tibble tidyr vpc]; };
   xpose4 = derive2 { name="xpose4"; version="4.6.1"; sha256="1722ai8r94dmy4d2r728iir0hl2b2gmym8xjsqscfc6jw070734i"; depends=[dplyr gam Hmisc lattice lazyeval readr survival]; };
   xptr = derive2 { name="xptr"; version="1.1"; sha256="12yvgbwm311hap3kk24wdx5zz084h0lhkj9k10mjzqp4a6aayi88"; depends=[]; };
   xray = derive2 { name="xray"; version="0.2"; sha256="1ibj92ljlj8a5rmbrci691yhpd4kwrfyl944nzl2dcbf58l01dzq"; depends=[dplyr foreach ggplot2 lubridate scales]; };
   xseq = derive2 { name="xseq"; version="0.2.1"; sha256="0bsakbfvkfv39q2ch2g21b17g84470sq4v73355cljlshsi6404i"; depends=[e1071 gptk impute preprocessCore RColorBrewer sfsmisc]; };
   xslt = derive2 { name="xslt"; version="1.3"; sha256="0giqzmdby9ax8gwx9b7xqka28k3hgymv4289k8p8dvg26d683p3l"; depends=[Rcpp xml2]; };
   xsp = derive2 { name="xsp"; version="0.1.2"; sha256="1jbmxa234v52qji8sz4bkg24c2n65b0zh9py1wyyfzw9n1wx5w0r"; depends=[ggplot2 reshape2]; };
-  xtable = derive2 { name="xtable"; version="1.8-2"; sha256="0398qkpvlw3dv0myz4mjcyqwpwc2m31l127r8vdzwc71wb6s28qn"; depends=[]; };
+  xtable = derive2 { name="xtable"; version="1.8-3"; sha256="09f311gq9g7dzf8jdvcx72j11xb7p00jlg066jjbpa6pz3zv1cjk"; depends=[]; };
   xtal = derive2 { name="xtal"; version="1.15"; sha256="1zq3vd5x3vw6acn47yd2x7kflr9sm3znmdkm68cs64ha54jbl3vs"; depends=[]; };
-  xtensor = derive2 { name="xtensor"; version="0.6.1-0"; sha256="0ajxzjj8nyn7a0z16agj499j6qwj0ykag152pvmqvdm000dx5n1l"; depends=[Rcpp]; };
+  xtensor = derive2 { name="xtensor"; version="0.8.1-0"; sha256="0qyqadg2yvvf51ch2w1aqsi1j0yfgw1167fps4s0k7gjvv692zfx"; depends=[Rcpp]; };
   xtermStyle = derive2 { name="xtermStyle"; version="3.0.5"; sha256="1q4qq8w4sgxbbb1x0i4k5xndvwisvjszg830wspwb37wigxz8xvz"; depends=[]; };
   xtractomatic = derive2 { name="xtractomatic"; version="3.4.2"; sha256="1w70kk608avnf7zdjx79gxqmj12cw86ma4x0b9j92md1vmpw5389"; depends=[dplyr httr ncdf4 readr sp]; };
-  xts = derive2 { name="xts"; version="0.10-2"; sha256="1i11fczks4lh8rpi6xbm9bm7f3jpcp6xw03kv178g3n3361qhmc1"; depends=[zoo]; };
-  xwf = derive2 { name="xwf"; version="0.2-1"; sha256="1g94wbsq8flnkxxfxx6yg87siiwpyrx219an9a2cf1blnwjv9b68"; depends=[mgcv]; };
-  xxIRT = derive2 { name="xxIRT"; version="2.1.0"; sha256="17cyvbywfvbs93ky8qmzh6fp94dk24p3wpzb76lxb8nfsvakq5pf"; depends=[ggplot2 lpSolveAPI reshape2]; };
+  xts = derive2 { name="xts"; version="0.11-1"; sha256="17d3g14xkxa1a5z5gd3gk1xjqfkjg1ik3i12q0arina8frql3jhd"; depends=[zoo]; };
+  xwf = derive2 { name="xwf"; version="0.2-2"; sha256="1psryam65pg7flfa20smm6lx184f76dhjv1lig8sy7y9hphfv3s1"; depends=[mgcv]; };
+  xxIRT = derive2 { name="xxIRT"; version="2.1.1"; sha256="1y21yc840kq98sy06qcnlnzizv5aya5yllx4mjx9njv7mvcsp1wr"; depends=[ggplot2 glpkAPI lpSolveAPI reshape2]; };
   xyloplot = derive2 { name="xyloplot"; version="1.6"; sha256="0d1dv3syfjwcp9fil9bl1my19d0kdyz1qrp1yf7ykrk8aq91762v"; depends=[]; };
   xyz = derive2 { name="xyz"; version="0.2"; sha256="13w4sb4pvgciwr8wsz785dafj2k2kpx7znz46r5d32wx88vkycp4"; depends=[Rcpp]; };
-  yaImpute = derive2 { name="yaImpute"; version="1.0-29"; sha256="1zxl4l54y9f9lmi17hlhsbsc4f1qb0dnnl5dg9frhq6bhw2lqxqb"; depends=[]; };
-  yacca = derive2 { name="yacca"; version="1.1"; sha256="0wg2wgvh1najmccmgzyigj11mshrdb8w4r2pqq360dracpn0ak6x"; depends=[]; };
+  yaImpute = derive2 { name="yaImpute"; version="1.0-30"; sha256="0s997gb9ig2if6nc4g89vi1yz6my3z9m7ai3bgjqw836643dmhg9"; depends=[]; };
+  yacca = derive2 { name="yacca"; version="1.1.1"; sha256="1hxgkyxipk27p74vdkiy8a3wjymhcsc6ad3y9mf15qsl2xim6wwl"; depends=[]; };
   yakmoR = derive2 { name="yakmoR"; version="0.1.1"; sha256="09aklz79s0911p2wnpd7gc6vrbr9lmiskhkahsc63pdigggmq9f7"; depends=[BBmisc checkmate Rcpp]; };
-  yaml = derive2 { name="yaml"; version="2.1.19"; sha256="04bzrnfgbpk0rhkvzwp3k3ip7jpq26bjxz71bx5mwxmcjdb07nz5"; depends=[]; };
+  yaml = derive2 { name="yaml"; version="2.2.0"; sha256="0in562nd0i23cg91a8kdbqgim656fgscykwi0icsnq53xj3srg2m"; depends=[]; };
   yardstick = derive2 { name="yardstick"; version="0.0.1"; sha256="165czwi62nrhhci06fb0rfpk2gki94aiyl4wlflmgpzmspmgz7m8"; depends=[broom dplyr MLmetrics pROC rlang tibble tidyr tidyselect]; };
   yarrr = derive2 { name="yarrr"; version="0.1.5"; sha256="1258bj7x4icaxfabnnd3fgwydnqbzxkih7zw0sdlwdax3q8fw5c5"; depends=[BayesFactor circlize jpeg]; };
   yasp = derive2 { name="yasp"; version="0.2.0"; sha256="0fza8h9y1wmarsmjcvw4r970d6j4ii795pd2h4xh9nlsirv50adi"; depends=[]; };
@@ -12683,7 +13248,7 @@ in with self; {
   yuima = derive2 { name="yuima"; version="1.8.1"; sha256="1jzk3623c1cpw9j8d9b96x6n0jwz8h2izzhrdp01cwwskbnv3hq2"; depends=[boot cubature expm mvtnorm Rcpp RcppArmadillo zoo]; };
   yuimaGUI = derive2 { name="yuimaGUI"; version="1.2.0"; sha256="166hsq1nc0jzkqbz08y3dl0qdi58swascbkm1lc7zhsh6g93azjs"; depends=[DT ggplot2 plotly quantmod sde shiny shinyBS shinydashboard shinyjs yuima]; };
   yummlyr = derive2 { name="yummlyr"; version="0.1.1"; sha256="0xrk6g58laksz92d8mxck923sk4j92g55szrkxk123wjp5kg9vx6"; depends=[httr jsonlite]; };
-  zCompositions = derive2 { name="zCompositions"; version="1.1.1"; sha256="1j6v7mfxhn67mr3q6cvcjj9pqc8a02w114z8q74h3l6jw8ahjg6m"; depends=[MASS NADA truncnorm]; };
+  zCompositions = derive2 { name="zCompositions"; version="1.1.1-1"; sha256="147layq5hj7hba2a5q9sb7dwv6rwha9d8040p1npmdif3nbap2zd"; depends=[MASS NADA truncnorm]; };
   zFactor = derive2 { name="zFactor"; version="0.1.7"; sha256="0vsjafg65qydfz0j75rrw40si5v2hwbf09z6d58wzffrwzgrwpvd"; depends=[data_table dplyr ggplot2 rootSolve tibble tidyr]; };
   zTree = derive2 { name="zTree"; version="1.0.4"; sha256="058vjvxn1lw07nxw8rs1b8vnw6ccxh3swrmvjicvr35xmakj8qa0"; depends=[plyr]; };
   zeallot = derive2 { name="zeallot"; version="0.1.0"; sha256="1sd1igcfnv27pa3bqxlbyxchi562h7grnjg1l7wxx3bwr49i57s3"; depends=[]; };
@@ -12692,6 +13257,7 @@ in with self; {
   zeligverse = derive2 { name="zeligverse"; version="0.1.1"; sha256="1hf3hbgzdlhhyy2gvg984dwp8d0qm0ziyn8i9h5x00gwf74vn9dr"; depends=[Amelia dplyr MatchIt purrr rstudioapi tibble WhatIf Zelig ZeligChoice ZeligEI]; };
   zendeskR = derive2 { name="zendeskR"; version="0.4"; sha256="06cjwk08w3x6dx717123psinid5bx6c563jnfn890373jw6xnfrk"; depends=[RCurl rjson]; };
   zenplots = derive2 { name="zenplots"; version="0.0-3"; sha256="1ba9xv522knzbirl6ac5hzbmsw8ignsmymbkps2w057w0fsc9iyz"; depends=[graph MASS PairViz]; };
+  zeroEQpart = derive2 { name="zeroEQpart"; version="0.1.0"; sha256="1n24nqyl0irpyspwx4b73xy228a84aa8zsn9fcf2lrlni5vyzmm0"; depends=[MASS ppcor]; };
   zetadiv = derive2 { name="zetadiv"; version="1.1.1"; sha256="0laxp2pd5s0s9wcnvs1r4shid2gi8ap4y9py6gpl207ywq6cxmgz"; depends=[car glm2 Imap mgcv nnls scam vegan]; };
   zfa = derive2 { name="zfa"; version="1.0"; sha256="0lddwpifkzggzvy56ans5pfknfr8laxcg264f3ph2z150gw1plsh"; depends=[SKAT]; };
   zic = derive2 { name="zic"; version="0.9.1"; sha256="1vd64ljigf6iwgzlgdxgj65nlwir176h7ddznddpaz2abh6n6zwp"; depends=[coda Rcpp RcppArmadillo]; };
@@ -12703,16 +13269,16 @@ in with self; {
   zoeppritz = derive2 { name="zoeppritz"; version="1.0-7"; sha256="14j9jl2g7gn94nzs96mwsgwlxnfbr1crjfmfwbi3rk367xi197jb"; depends=[]; };
   zoib = derive2 { name="zoib"; version="1.5.1"; sha256="0lsyr8hfhk4dk129x2l1793v6nmf2k97wnsc44ir6ymip3i4zfld"; depends=[abind coda Formula matrixcalc rjags]; };
   zonator = derive2 { name="zonator"; version="0.5.9"; sha256="04gjrm9nxnxsigrc30zghmv37ijsx27134hfnrbm51smw2y60dm4"; depends=[ggplot2 raster RColorBrewer reshape2 rgdal]; };
-  zoo = derive2 { name="zoo"; version="1.8-2"; sha256="1lpwigxmi5sc23xrha4gcsccsm4yfsg0sa97y6vac3pg1lliblvx"; depends=[lattice]; };
+  zoo = derive2 { name="zoo"; version="1.8-4"; sha256="1pywcp86kqijdrvl42qwdy75szrag9pzj0p88zbrj2r1klb8rn5i"; depends=[lattice]; };
   zooaRch = derive2 { name="zooaRch"; version="1.2"; sha256="0grc378xppv0303sf4flfqz5002vq5a23nzbq4bsff41rww7dihc"; depends=[ggplot2]; };
   zooaRchGUI = derive2 { name="zooaRchGUI"; version="1.0.2"; sha256="0snggx0d69ajz6xxwnv03l12jpjrjkpy2dgf4lrpm2l8rspd27i4"; depends=[car coda foreign geomorph ggplot2 MASS pgirmess raster readxl rjags sp spdep splancs tcltk2 tkrplot vegan]; };
-  zoocat = derive2 { name="zoocat"; version="0.2.0"; sha256="1xqi90jnpqjdf3zr4pldh1a2gjppjwjrgkq71rvdhmcrf5s8jav0"; depends=[plyr reshape2 scales zoo]; };
+  zoocat = derive2 { name="zoocat"; version="0.2.0.1"; sha256="0rdjgf1gvnixqwxrnvzswb53yzcvjgvfkrms6d38bhfyw320kgdp"; depends=[plyr reshape2 scales zoo]; };
   zooimage = derive2 { name="zooimage"; version="5.5.2"; sha256="0ck8w0zb9l1n9xvjwqshq9q9l8pigy3yslq2hnfbgcwk17kk9mp8"; depends=[digest DT filehash jpeg MASS mda mlearning png shiny svDialogs svMisc tiff]; };
   zoom = derive2 { name="zoom"; version="2.0.4"; sha256="03f5rxfr6ncf1j6vpn7pip21q7ylj4bx0a5xphqb6x6i33lxf1g5"; depends=[]; };
   zoon = derive2 { name="zoon"; version="0.6.3"; sha256="11accyiv9n2zk7fq5bapbmv1ixadab19666i8w41bw642lafgivq"; depends=[dismo plyr randomForest raster RCurl rfigshare rgdal roxygen2 rworldmap SDMTools sp testthat]; };
   zscorer = derive2 { name="zscorer"; version="0.1.0"; sha256="1199d72v9hm7k5jnll2ngn3jlfsiaxrrpbqzrkl0fghm6wnxcc6h"; depends=[]; };
   zstdr = derive2 { name="zstdr"; version="0.1.1"; sha256="1rigsdh0f68l6vvvxp277cp8hbxj10x4588s6az1njxfpxrc8ajj"; depends=[Rcpp]; };
-  ztable = derive2 { name="ztable"; version="0.1.8"; sha256="1hk5k9614n52dpfrhdws06w4gvwhnz8q47x4cwxx88qmrzm8z2m3"; depends=[]; };
+  ztable = derive2 { name="ztable"; version="0.2.0"; sha256="0g7khk5ifsdh9p31wlwh2l5mn1hzxzpv6qcn1wh34vsfjdmijjwy"; depends=[flextable magrittr moonBook officer RColorBrewer scales stringr]; };
   ztype = derive2 { name="ztype"; version="0.1.0"; sha256="0brbq2rgkl4mhjbb70kkfv47lzs66k9ppfs2klavcbripirxn5fx"; depends=[assertthat dplyr ggplot2 lubridate magrittr rvest stringr]; };
   zyp = derive2 { name="zyp"; version="0.10-1"; sha256="0f1fqqxysf3psnvn08s5qly2c958h1hhznjjj8mvpjr5g6hqlr1k"; depends=[Kendall]; };
 }
diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix
index c9766a985f6f..066ad48d9539 100644
--- a/pkgs/development/r-modules/default.nix
+++ b/pkgs/development/r-modules/default.nix
@@ -278,7 +278,6 @@ let
     kza = [ pkgs.fftw.dev ];
     libamtrack = [ pkgs.gsl_1 ];
     magick = [ pkgs.imagemagick.dev ];
-    mixcat = [ pkgs.gsl_1 ];
     mvabund = [ pkgs.gsl_1 ];
     mwaved = [ pkgs.fftw.dev ];
     ncdf4 = [ pkgs.netcdf ];
@@ -353,7 +352,6 @@ let
     sf = [ pkgs.gdal pkgs.proj pkgs.geos ];
     showtext = [ pkgs.zlib pkgs.libpng pkgs.icu pkgs.freetype.dev ];
     simplexreg = [ pkgs.gsl_1 ];
-    SOD = [ pkgs.opencl-headers ];
     spate = [ pkgs.fftw.dev ];
     ssanv = [ pkgs.proj ];
     stsm = [ pkgs.gsl_1 ];
@@ -602,11 +600,9 @@ let
     "RcmdrPlugin_coin"
     "RcmdrPlugin_depthTools"
     "RcmdrPlugin_DoE"
-    "RcmdrPlugin_doex"
     "RcmdrPlugin_EACSPIR"
     "RcmdrPlugin_EBM"
     "RcmdrPlugin_EcoVirtual"
-    "RcmdrPlugin_epack"
     "RcmdrPlugin_EZR"
     "RcmdrPlugin_FactoMineR"
     "RcmdrPlugin_HH"
@@ -624,7 +620,6 @@ let
     "RcmdrPlugin_sampling"
     "RcmdrPlugin_SCDA"
     "RcmdrPlugin_SLC"
-    "RcmdrPlugin_SM"
     "RcmdrPlugin_sos"
     "RcmdrPlugin_steepness"
     "RcmdrPlugin_survival"
@@ -641,7 +636,6 @@ let
     "rich"
     "rioja"
     "ripa"
-    "rite"
     "RNCEP"
     "RQDA"
     "RSDA"

From 9b63cc63131176cf232d8677ba56b4e57563982c Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Fri, 2 Nov 2018 11:46:37 +0100
Subject: [PATCH 0327/1129] r-rlang: patch shebang in configure script to fix
 the build

---
 pkgs/development/r-modules/default.nix | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix
index 066ad48d9539..56c707c6fa76 100644
--- a/pkgs/development/r-modules/default.nix
+++ b/pkgs/development/r-modules/default.nix
@@ -942,6 +942,11 @@ let
       PKGCONFIG_CFLAGS = "-I${pkgs.openssl.dev}/include -I${pkgs.cyrus_sasl.dev}/include -I${pkgs.zlib.dev}/include";
       PKGCONFIG_LIBS = "-Wl,-rpath,${pkgs.openssl.out}/lib -L${pkgs.openssl.out}/lib -L${pkgs.cyrus_sasl.out}/lib -L${pkgs.zlib.out}/lib -lssl -lcrypto -lsasl2 -lz";
     });
+
+    rlang = old.rlang.overrideDerivation (attrs: {
+      preConfigure = "patchShebangs configure";
+    });
+
   };
 in
   self

From 9f9fc7ae1545306837948cda08a16c10fdbcce2a Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Fri, 2 Nov 2018 12:44:08 +0100
Subject: [PATCH 0328/1129] nlopt: update from 2.4.2 to 2.5.0

---
 pkgs/development/libraries/nlopt/default.nix | 19 +++++++++++++------
 1 file changed, 13 insertions(+), 6 deletions(-)

diff --git a/pkgs/development/libraries/nlopt/default.nix b/pkgs/development/libraries/nlopt/default.nix
index 904cdc6a3daa..48b7acf2896c 100644
--- a/pkgs/development/libraries/nlopt/default.nix
+++ b/pkgs/development/libraries/nlopt/default.nix
@@ -1,13 +1,20 @@
-{ fetchurl, stdenv, octave ? null }:
+{ fetchurl, stdenv, octave ? null, cmake }:
 
-stdenv.mkDerivation rec {
-  name = "nlopt-2.4.2";
+let
+
+  version = "2.5.0";
+
+in
+
+stdenv.mkDerivation {
+  name = "nlopt-${version}";
 
   src = fetchurl {
-    url = "http://ab-initio.mit.edu/nlopt/${name}.tar.gz";
-    sha256 = "12cfkkhcdf4zmb6h7y6qvvdvqjs2xf9sjpa3rl3bq76px4yn76c0";
+    url = "https://github.com/stevengj/nlopt/archive/v${version}.tar.gz";
+    sha256 = "1bmlsdzkw8xbigiihffyb0kdaqbyfn7dr8s5pdgavy7z05bpmpf6";
   };
 
+  nativeBuildInputs = [ cmake ];
   buildInputs = [ octave ];
 
   configureFlags = [
@@ -24,7 +31,7 @@ stdenv.mkDerivation rec {
   ];
 
   meta = {
-    homepage = http://ab-initio.mit.edu/nlopt/;
+    homepage = "https://nlopt.readthedocs.io/en/latest/";
     description = "Free open-source library for nonlinear optimization";
     license = stdenv.lib.licenses.lgpl21Plus;
     hydraPlatforms = stdenv.lib.platforms.linux;

From c9e13806267f7fd3351d52a19cc6db5fa2985ca9 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Fri, 2 Nov 2018 12:41:45 +0100
Subject: [PATCH 0329/1129] r-nloptr: fix build by adding pkgconfig

---
 pkgs/development/r-modules/default.nix | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix
index 56c707c6fa76..f40c0fcb5592 100644
--- a/pkgs/development/r-modules/default.nix
+++ b/pkgs/development/r-modules/default.nix
@@ -281,7 +281,7 @@ let
     mvabund = [ pkgs.gsl_1 ];
     mwaved = [ pkgs.fftw.dev ];
     ncdf4 = [ pkgs.netcdf ];
-    nloptr = [ pkgs.nlopt ];
+    nloptr = [ pkgs.nlopt pkgs.pkgconfig ];
     odbc = [ pkgs.unixODBC ];
     outbreaker = [ pkgs.gsl_1 ];
     pander = [ pkgs.pandoc pkgs.which ];
@@ -855,10 +855,9 @@ let
     });
 
     nloptr = old.nloptr.overrideDerivation (attrs: {
-      configureFlags = [
-        "--with-nlopt-cflags=-I${pkgs.nlopt}/include"
-        "--with-nlopt-libs='-L${pkgs.nlopt}/lib -lnlopt_cxx -lm'"
-      ];
+      # Drop bundled nlopt source code. Probably unnecessary, but I want to be
+      # sure we're using the system library, not this one.
+      preConfigure = "rm -r src/nlopt_src";
     });
 
     V8 = old.V8.overrideDerivation (attrs: {

From 7f05d6186c22d50fc54f166e0083c0c2cd065cbe Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Dani=C3=ABl=20de=20Kok?= <me@danieldk.eu>
Date: Fri, 2 Nov 2018 18:47:58 +0100
Subject: [PATCH 0330/1129] picard: 1.4.2 -> 2.0.4

Changes:

https://github.com/metabrainz/picard/releases
https://blog.musicbrainz.org/2018/07/19/picard-2-0-released/

Upgrades to Python 3 and PyQt 5.
---
 pkgs/applications/audio/picard/default.nix | 16 +++++++++++-----
 1 file changed, 11 insertions(+), 5 deletions(-)

diff --git a/pkgs/applications/audio/picard/default.nix b/pkgs/applications/audio/picard/default.nix
index d7e6173da9ad..3dae0ca5d7c4 100644
--- a/pkgs/applications/audio/picard/default.nix
+++ b/pkgs/applications/audio/picard/default.nix
@@ -1,21 +1,22 @@
-{ stdenv, python2Packages, fetchurl, gettext }:
+{ stdenv, python3Packages, fetchurl, gettext, chromaprint }:
 
 let
-  pythonPackages = python2Packages;
+  pythonPackages = python3Packages;
 in pythonPackages.buildPythonApplication rec {
   pname = "picard";
-  version = "1.4.2";
+  version = "2.0.4";
 
   src = fetchurl {
     url = "http://ftp.musicbrainz.org/pub/musicbrainz/picard/picard-${version}.tar.gz";
-    sha256 = "0d12k40d9fbcn801gp5zdsgvjdrh4g97vda3ga16rmmvfwwfxbgh";
+    sha256 = "0ds3ylpqn717fnzcjrfn05v5xram01bj6n3hwn9igmkd1jgf8vhc";
   };
 
   buildInputs = [ gettext ];
 
   propagatedBuildInputs = with pythonPackages; [
-    pyqt4
+    pyqt5
     mutagen
+    chromaprint
     discid
   ];
 
@@ -23,6 +24,11 @@ in pythonPackages.buildPythonApplication rec {
     python setup.py install --prefix="$out"
   '';
 
+  prePatch = ''
+    # Pesky unicode punctuation.
+    substituteInPlace setup.cfg --replace "‘" "'"
+  '';
+
   doCheck = false;
 
   meta = with stdenv.lib; {

From c78761b5bdd814956364d851bbcb08cab4279876 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Fri, 2 Nov 2018 13:12:54 -0500
Subject: [PATCH 0331/1129] tor: 0.3.4.8 -> 0.3.4.9

https://gitweb.torproject.org/tor.git/plain/ChangeLog?h=tor-0.3.4.9

Please confirm the sha256 is correct for a verified tarball,
I'm not setup (or know how offhand but docs look promising)
to do this myself.
---
 pkgs/tools/security/tor/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/security/tor/default.nix b/pkgs/tools/security/tor/default.nix
index d7344884951c..d43b8598c18b 100644
--- a/pkgs/tools/security/tor/default.nix
+++ b/pkgs/tools/security/tor/default.nix
@@ -14,11 +14,11 @@
 }:
 
 stdenv.mkDerivation rec {
-  name = "tor-0.3.4.8";
+  name = "tor-0.3.4.9";
 
   src = fetchurl {
     url = "https://dist.torproject.org/${name}.tar.gz";
-    sha256 = "08qhzcmzxp5xr2l5721vagksqnnbrzzzy5hmz5y9r8lrq2r4qsl2";
+    sha256 = "0jhnvnp08hsfrzgsvg5xnfxyaw3nzgg9h24cwbwnz6iby20i05qs";
   };
 
   outputs = [ "out" "geoip" ];

From 508ce6e208c2cce1522c6b399a1344c3008133d4 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Fri, 2 Nov 2018 17:42:42 +0100
Subject: [PATCH 0332/1129] haskellPackages: default to ghc 8.4.4 as per
 Stackage LTS 12.16

---
 .../haskell-modules/configuration-hackage2nix.yaml | 14 +++++++-------
 pkgs/top-level/all-packages.nix                    |  2 +-
 pkgs/top-level/haskell-packages.nix                |  2 +-
 3 files changed, 9 insertions(+), 9 deletions(-)

diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
index 1b85a564e31b..aa96bebc21b8 100644
--- a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
+++ b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
@@ -1,6 +1,6 @@
 # pkgs/development/haskell-modules/configuration-hackage2nix.yaml
 
-compiler: ghc-8.4.3
+compiler: ghc-8.4.4
 
 core-packages:
   - array-0.5.2.0
@@ -12,12 +12,12 @@ core-packages:
   - deepseq-1.4.3.0
   - directory-1.3.1.5
   - filepath-1.4.2
-  - ghc-8.4.3
-  - ghc-boot-8.4.3
-  - ghc-boot-th-8.4.3
+  - ghc-8.4.4
+  - ghc-boot-8.4.4
+  - ghc-boot-th-8.4.4
   - ghc-compact-0.1.0.0
   - ghc-prim-0.5.2.0
-  - ghci-8.4.3
+  - ghci-8.4.4
   - haskeline-0.7.4.2
   - hpc-0.6.0.3
   - integer-gmp-1.0.2.0
@@ -26,10 +26,10 @@ core-packages:
   - pretty-1.1.3.6
   - process-1.6.3.0
   - rts-1.0
-  - stm-2.4.5.0
+  - stm-2.4.5.1
   - template-haskell-2.13.0.0
   - terminfo-0.4.1.1
-  - text-1.2.3.0
+  - text-1.2.3.1
   - time-1.8.0.2
   - transformers-0.5.5.0
   - unix-2.7.2.2
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 192d90132298..9b9bcacc4512 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -6861,7 +6861,7 @@ with pkgs;
 
   haskell = callPackage ./haskell-packages.nix { };
 
-  haskellPackages = haskell.packages.ghc843.override {
+  haskellPackages = haskell.packages.ghc844.override {
     overrides = config.haskellPackageOverrides or haskell.packageOverrides;
   };
 
diff --git a/pkgs/top-level/haskell-packages.nix b/pkgs/top-level/haskell-packages.nix
index e654b35d258d..dea3ba954253 100644
--- a/pkgs/top-level/haskell-packages.nix
+++ b/pkgs/top-level/haskell-packages.nix
@@ -103,7 +103,7 @@ in {
       stage0 = ../development/compilers/ghcjs-ng/8.2/stage0.nix;
     };
     ghcjs84 = callPackage ../development/compilers/ghcjs-ng {
-      bootPkgs = packages.ghc843;
+      bootPkgs = packages.ghc844;
       ghcjsSrcJson = ../development/compilers/ghcjs-ng/8.4/git.json;
       stage0 = ../development/compilers/ghcjs-ng/8.4/stage0.nix;
       ghcjsDepOverrides = callPackage ../development/compilers/ghcjs-ng/8.4/dep-overrides.nix {};

From 7766df8eba9869813c1a031d28601eabb7325652 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Thu, 1 Nov 2018 02:31:11 +0100
Subject: [PATCH 0333/1129] hackage-packages.nix: automatic Haskell package set
 update

This update was generated by hackage2nix v2.11.1-2-g57c4f0f from Hackage revision
https://github.com/commercialhaskell/all-cabal-hashes/commit/98ec0eee2ddef5d4a00e2ac4a95e8add46d23b69.
---
 .../haskell-modules/hackage-packages.nix      | 705 +++++++++++++++---
 1 file changed, 604 insertions(+), 101 deletions(-)

diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix
index bb6e6da1e0cb..34c638217563 100644
--- a/pkgs/development/haskell-modules/hackage-packages.nix
+++ b/pkgs/development/haskell-modules/hackage-packages.nix
@@ -30439,8 +30439,8 @@ self: {
      }:
      mkDerivation {
        pname = "ats-pkg";
-       version = "3.2.3.0";
-       sha256 = "0yirmngvkmkxdbhh3r6b1j9385hhwnqpr6mmw9kf50axd7czx421";
+       version = "3.2.4.0";
+       sha256 = "0pj7zyf38rbi48lh8jhcm54wrflkdyh1583d9h4iy9nj5apa85ip";
        isLibrary = true;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -31563,7 +31563,7 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
-  "avro_0_3_6_1" = callPackage
+  "avro_0_4_0_0" = callPackage
     ({ mkDerivation, aeson, array, base, base16-bytestring, binary
      , bytestring, containers, data-binary-ieee754, directory, entropy
      , extra, fail, hashable, hspec, lens, lens-aeson, mtl, pure-zlib
@@ -31572,8 +31572,8 @@ self: {
      }:
      mkDerivation {
        pname = "avro";
-       version = "0.3.6.1";
-       sha256 = "0b1pj47nfpbqvcp5vzraa1przq1c9ll8n76qbyg05fjfvamycbq3";
+       version = "0.4.0.0";
+       sha256 = "1cly3x4lmibcjm5sz68s2fncakpx2cfvyimv4ck1mm5v94yfp8pi";
        libraryHaskellDepends = [
          aeson array base base16-bytestring binary bytestring containers
          data-binary-ieee754 entropy fail hashable mtl pure-zlib scientific
@@ -33786,6 +33786,20 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "bazel-runfiles" = callPackage
+    ({ mkDerivation, base, directory, filepath }:
+     mkDerivation {
+       pname = "bazel-runfiles";
+       version = "0.7.0.1";
+       sha256 = "000awjykargiirnmb3nfqp8dk1p87f5aqx2d07nxrrgflxs7y8ad";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [ base directory filepath ];
+       executableHaskellDepends = [ base filepath ];
+       description = "Locate Bazel runfiles location";
+       license = stdenv.lib.licenses.asl20;
+     }) {};
+
   "bbdb" = callPackage
     ({ mkDerivation, base, hspec, parsec }:
      mkDerivation {
@@ -47925,8 +47939,8 @@ self: {
      }:
      mkDerivation {
        pname = "cloben";
-       version = "0.1.0.3";
-       sha256 = "1nzks0p5p0a76jys5dza6iqp48kd1lgxla3k3dfd8znlg9nd7dy2";
+       version = "0.1.1.0";
+       sha256 = "14vkga43sm995rg4s4npjca7xslgs33kl1ivknbflfidvgpdlxmb";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
@@ -50289,8 +50303,8 @@ self: {
      }:
      mkDerivation {
        pname = "compdata-fixplate";
-       version = "0.1.2";
-       sha256 = "1ljnmwgjllpcrgibfxxb4zghfl76g7951i2r9haycpwmikz7dggz";
+       version = "0.1.3";
+       sha256 = "1b9xmp2lps9k9fvvpqlha0vkncs4pivixyyqs71zl4dxcrsa8ryx";
        libraryHaskellDepends = [
          base composition containers deriving-compat fixplate tree-view
        ];
@@ -54868,8 +54882,8 @@ self: {
      }:
      mkDerivation {
        pname = "creatur";
-       version = "5.9.25";
-       sha256 = "00bhszbjz7in5z1bilb1m3ld5sdd6xk5s95h6cw882qz0i1dmlp5";
+       version = "5.9.27";
+       sha256 = "016f5rzn2dvd85mdjcdrc7jmy4v75sa4qf98rqyp8qc8cpcqcx4c";
        libraryHaskellDepends = [
          array base binary bytestring cereal cond directory exceptions
          filepath gray-extended hdaemonize hsyslog MonadRandom mtl random
@@ -61900,6 +61914,8 @@ self: {
        pname = "deriving-compat";
        version = "0.5.2";
        sha256 = "0h5jfpwawp7xn9vi82zqskaypa3vypm97lz2farmmfqvnkw60mj9";
+       revision = "1";
+       editedCabalFile = "1s672vc7w96fmvr1p3fkqi9q80sn860j14545sskpxb8iz9f7sxg";
        libraryHaskellDepends = [
          base containers ghc-boot-th ghc-prim template-haskell
          th-abstraction transformers transformers-compat
@@ -85876,19 +85892,20 @@ self: {
      , edit-distance, esqueleto, exceptions, fdo-notify, feed, filepath
      , free, git, gnupg, hinotify, hslogger, http-client
      , http-client-tls, http-conduit, http-types, IfElse, lsof, magic
-     , memory, monad-control, monad-logger, mountpoints, mtl, network
-     , network-info, network-multicast, network-uri, old-locale, openssh
-     , optparse-applicative, perl, persistent, persistent-sqlite
-     , persistent-template, process, QuickCheck, random, regex-tdfa
-     , resourcet, rsync, SafeSemaphore, sandi, securemem, socks, split
-     , stm, stm-chans, tagsoup, tasty, tasty-hunit, tasty-quickcheck
-     , tasty-rerun, text, time, torrent, transformers, unix, unix-compat
-     , unordered-containers, utf8-string, uuid, vector, wget, which
+     , memory, microlens, monad-control, monad-logger, mountpoints, mtl
+     , network, network-info, network-multicast, network-uri, old-locale
+     , openssh, optparse-applicative, perl, persistent
+     , persistent-sqlite, persistent-template, process, QuickCheck
+     , random, regex-tdfa, resourcet, rsync, SafeSemaphore, sandi
+     , securemem, socks, split, stm, stm-chans, tagsoup, tasty
+     , tasty-hunit, tasty-quickcheck, tasty-rerun, text, time, torrent
+     , transformers, unix, unix-compat, unordered-containers
+     , utf8-string, uuid, vector, wget, which
      }:
      mkDerivation {
        pname = "git-annex";
-       version = "6.20181011";
-       sha256 = "0k18vrk5g9fdlhvklg14fyjk7x9css18i82xzl8wsycjbcq9ncgf";
+       version = "7.20181031";
+       sha256 = "02h3c77mdlr4c6l7c14ai0i2kq8c7pawvsf33my449b1srviazlm";
        configureFlags = [
          "-fassistant" "-fcryptonite" "-fdbus" "-fdesktopnotify" "-fdns"
          "-ffeed" "-finotify" "-fpairing" "-fproduction" "-fquvi" "-f-s3"
@@ -85907,7 +85924,7 @@ self: {
          crypto-api cryptonite data-default DAV dbus directory
          disk-free-space dlist edit-distance esqueleto exceptions fdo-notify
          feed filepath free hinotify hslogger http-client http-client-tls
-         http-conduit http-types IfElse magic memory monad-control
+         http-conduit http-types IfElse magic memory microlens monad-control
          monad-logger mountpoints mtl network network-info network-multicast
          network-uri old-locale optparse-applicative persistent
          persistent-sqlite persistent-template process QuickCheck random
@@ -94388,8 +94405,8 @@ self: {
      }:
      mkDerivation {
        pname = "hadolint";
-       version = "1.14.0";
-       sha256 = "0cypqvl04fd0gdakl2kf087fjy6qw968isx2hmli5z5gza18hl0b";
+       version = "1.15.0";
+       sha256 = "13xpbwnh6xs3lj6vgqanww3ipz8bsfh3q305rkrb7kgl338nqgsm";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -100220,8 +100237,8 @@ self: {
      }:
      mkDerivation {
        pname = "haskoin-node";
-       version = "0.9.3";
-       sha256 = "149k9b11c0dj3qqdbinwqnjxy8bxmc4bk65lfxpic2zy26n46k7q";
+       version = "0.9.4";
+       sha256 = "1lwlbi5pw9wngmhk6dkyc05ahq1w1a0jxipkf9g5spq7ipfw4v6y";
        libraryHaskellDepends = [
          base bytestring cereal conduit conduit-extra data-default hashable
          haskoin-core monad-logger mtl network nqe random resourcet
@@ -100292,8 +100309,8 @@ self: {
      }:
      mkDerivation {
        pname = "haskoin-store";
-       version = "0.4.2";
-       sha256 = "0fjp566icp76dqhivl9jn3s3k2fvxmjysj4rpmrvwfyzb7snlqvp";
+       version = "0.6.0";
+       sha256 = "1qzxx1rbwv792f96wcsqmbsshd6qf34fqj6byi17la51s900zr09";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -100556,6 +100573,35 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "hasktorch" = callPackage
+    ({ mkDerivation, backprop, base, dimensions, generic-lens
+     , ghc-typelits-natnormalise, hasktorch-ffi-th, hasktorch-ffi-thc
+     , hasktorch-indef, hasktorch-signatures-partial, hasktorch-types-th
+     , hasktorch-types-thc, hspec, microlens-platform, monad-loops, mtl
+     , QuickCheck, safe-exceptions, singletons, text, time, transformers
+     }:
+     mkDerivation {
+       pname = "hasktorch";
+       version = "0.0.1.0";
+       sha256 = "10lmas8x4nk7z7phxj1a2bhzjz7qhbmy472f9j584mbagvklfkmc";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         base dimensions hasktorch-ffi-th hasktorch-ffi-thc hasktorch-indef
+         hasktorch-signatures-partial hasktorch-types-th hasktorch-types-thc
+         safe-exceptions singletons text
+       ];
+       executableHaskellDepends = [ base ];
+       testHaskellDepends = [
+         backprop base dimensions generic-lens ghc-typelits-natnormalise
+         hspec microlens-platform monad-loops mtl QuickCheck singletons time
+         transformers
+       ];
+       doHaddock = false;
+       description = "Torch for tensors and neural networks in Haskell";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "hasktorch-codegen" = callPackage
     ({ mkDerivation, base, containers, directory, hashable, hspec
      , hspec-discover, megaparsec, optparse-applicative, pretty-show
@@ -100563,8 +100609,8 @@ self: {
      }:
      mkDerivation {
        pname = "hasktorch-codegen";
-       version = "0.0.1.0";
-       sha256 = "0s48myr8k96kb0mwvfcc9h5razp8y5k8dk987hfg101h2nfz5k10";
+       version = "0.0.1.1";
+       sha256 = "0yygx1w7i9mnyxrqzz94vrni5y7rkn92yycax7rqg2r5cds2xb6g";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -100583,6 +100629,180 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "hasktorch-ffi-tests" = callPackage
+    ({ mkDerivation, base, hasktorch-types-th, hspec, QuickCheck, text
+     }:
+     mkDerivation {
+       pname = "hasktorch-ffi-tests";
+       version = "0.0.1.0";
+       sha256 = "0850v3wqf0x5hkk5py7k1glh591p59fs1y1kn2jf2giqmy05qzlc";
+       libraryHaskellDepends = [
+         base hasktorch-types-th hspec QuickCheck text
+       ];
+       description = "Testing library for Hasktorch's FFI bindings";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
+  "hasktorch-ffi-th" = callPackage
+    ({ mkDerivation, ATen, base, c2hs, hasktorch-ffi-tests
+     , hasktorch-types-th, hspec, inline-c, QuickCheck, text
+     }:
+     mkDerivation {
+       pname = "hasktorch-ffi-th";
+       version = "0.0.1.0";
+       sha256 = "10gdvkwcjjzmrvmlz8vf823ja1jpab1nrph5lq46fcz8nqycsjq0";
+       libraryHaskellDepends = [ base hasktorch-types-th inline-c text ];
+       librarySystemDepends = [ ATen ];
+       libraryToolDepends = [ c2hs ];
+       testHaskellDepends = [
+         base hasktorch-ffi-tests hasktorch-types-th hspec QuickCheck text
+       ];
+       description = "Bindings to Torch";
+       license = stdenv.lib.licenses.bsd3;
+     }) {ATen = null;};
+
+  "hasktorch-ffi-thc" = callPackage
+    ({ mkDerivation, ATen, base, c2hs, hasktorch-ffi-tests
+     , hasktorch-ffi-th, hasktorch-types-th, hasktorch-types-thc, hspec
+     , inline-c, QuickCheck, text
+     }:
+     mkDerivation {
+       pname = "hasktorch-ffi-thc";
+       version = "0.0.1.0";
+       sha256 = "0l3xvhdyn2dzw999fbhihl20s3q01r5vp247d0rh27zvyszg7l3y";
+       libraryHaskellDepends = [
+         base hasktorch-types-th hasktorch-types-thc inline-c text
+       ];
+       librarySystemDepends = [ ATen ];
+       libraryToolDepends = [ c2hs ];
+       testHaskellDepends = [
+         base hasktorch-ffi-tests hasktorch-ffi-th hasktorch-types-th
+         hasktorch-types-thc hspec QuickCheck text
+       ];
+       description = "Bindings to Cutorch";
+       license = stdenv.lib.licenses.bsd3;
+     }) {ATen = null;};
+
+  "hasktorch-indef" = callPackage
+    ({ mkDerivation, backprop, base, containers, deepseq, dimensions
+     , ghc-typelits-natnormalise, hasktorch-ffi-th, hasktorch-signatures
+     , hasktorch-signatures-partial, hasktorch-signatures-support
+     , hasktorch-types-th, hspec, managed, mtl, QuickCheck
+     , safe-exceptions, singletons, text, transformers, vector
+     }:
+     mkDerivation {
+       pname = "hasktorch-indef";
+       version = "0.0.1.0";
+       sha256 = "0xmz7jid3sg3d2b4q1051fs7g0fljgvqxqwhzhd4g85fx7zr5nk3";
+       libraryHaskellDepends = [
+         backprop base containers deepseq dimensions
+         ghc-typelits-natnormalise hasktorch-ffi-th hasktorch-signatures
+         hasktorch-signatures-partial hasktorch-signatures-support
+         hasktorch-types-th managed mtl safe-exceptions singletons text
+         transformers vector
+       ];
+       testHaskellDepends = [
+         backprop base dimensions ghc-typelits-natnormalise hasktorch-ffi-th
+         hasktorch-types-th hspec mtl QuickCheck singletons text
+         transformers
+       ];
+       doHaddock = false;
+       description = "Core Hasktorch abstractions wrapping FFI bindings";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
+  "hasktorch-signatures" = callPackage
+    ({ mkDerivation, base, hasktorch-ffi-th, hasktorch-ffi-thc
+     , hasktorch-signatures-partial, hasktorch-signatures-support
+     , hasktorch-signatures-types, hasktorch-types-th
+     , hasktorch-types-thc
+     }:
+     mkDerivation {
+       pname = "hasktorch-signatures";
+       version = "0.0.1.0";
+       sha256 = "1p8c3h0naqcbjxb3jbiss9zgfyg0hj0wcb6qlid6kwy925i4cyk1";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         base hasktorch-signatures-partial hasktorch-signatures-support
+         hasktorch-signatures-types hasktorch-types-th hasktorch-types-thc
+       ];
+       executableHaskellDepends = [
+         base hasktorch-ffi-th hasktorch-ffi-thc hasktorch-types-th
+         hasktorch-types-thc
+       ];
+       doHaddock = false;
+       description = "Backpack signatures for Tensor operations";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
+  "hasktorch-signatures-partial" = callPackage
+    ({ mkDerivation, base, hasktorch-signatures-types
+     , hasktorch-types-th
+     }:
+     mkDerivation {
+       pname = "hasktorch-signatures-partial";
+       version = "0.0.1.0";
+       sha256 = "12dc5i4818j4q09mdshygz16zq1zyp32k6c1imgp9dl6bl4l05ss";
+       libraryHaskellDepends = [
+         base hasktorch-signatures-types hasktorch-types-th
+       ];
+       description = "Functions to partially satisfy tensor signatures";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
+  "hasktorch-signatures-support" = callPackage
+    ({ mkDerivation, base, hasktorch-signatures-types
+     , hasktorch-types-th
+     }:
+     mkDerivation {
+       pname = "hasktorch-signatures-support";
+       version = "0.0.1.0";
+       sha256 = "1vfmpsmgak4ifhpqh15ycf01p8l3a5qas3m7lkg09y8mqimwq5hh";
+       libraryHaskellDepends = [
+         base hasktorch-signatures-types hasktorch-types-th
+       ];
+       doHaddock = false;
+       description = "Signatures for support tensors in hasktorch";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
+  "hasktorch-signatures-types" = callPackage
+    ({ mkDerivation, base, deepseq }:
+     mkDerivation {
+       pname = "hasktorch-signatures-types";
+       version = "0.0.1.0";
+       sha256 = "0zaa0ihgbsiwqla46dixmxki75miy5dz91agvvd147rmr2khx1j2";
+       libraryHaskellDepends = [ base deepseq ];
+       doHaddock = false;
+       description = "Core types for Hasktorch backpack signatures";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
+  "hasktorch-types-th" = callPackage
+    ({ mkDerivation, base, c2hs, inline-c }:
+     mkDerivation {
+       pname = "hasktorch-types-th";
+       version = "0.0.1.0";
+       sha256 = "0irlf1lvadnr3j3zjakvkvrwdw8gpg5smk69w9l54idwsi6yvhdd";
+       libraryHaskellDepends = [ base inline-c ];
+       libraryToolDepends = [ c2hs ];
+       description = "C-types for Torch";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
+  "hasktorch-types-thc" = callPackage
+    ({ mkDerivation, base, c2hs, hasktorch-types-th, inline-c }:
+     mkDerivation {
+       pname = "hasktorch-types-thc";
+       version = "0.0.1.0";
+       sha256 = "06jxjn9s34myy4v8ad42xqmkyad5qraj99a3vpcxfagjxwcn4hbd";
+       libraryHaskellDepends = [ base hasktorch-types-th inline-c ];
+       libraryToolDepends = [ c2hs ];
+       description = "C-types for Cutorch";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "haskus-binary" = callPackage
     ({ mkDerivation, base, bytestring, cereal, criterion, haskus-utils
      , mtl, QuickCheck, tasty, tasty-quickcheck
@@ -107893,8 +108113,8 @@ self: {
      }:
      mkDerivation {
        pname = "hoauth2";
-       version = "1.8.0";
-       sha256 = "02pirdgq1l638n126qj6sccfkjc6scxl53m584fxq79gfdwarx2q";
+       version = "1.8.1";
+       sha256 = "1b2rjqd8q0ybx26pmmsb1am9v6pnbp0xb3fzqvivxppdr5z6kl29";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -111060,17 +111280,18 @@ self: {
 
   "hs2ats" = callPackage
     ({ mkDerivation, ansi-wl-pprint, base, casing, composition-prelude
-     , criterion, deepseq, haskell-src-exts, hspec, hspec-dirstream
-     , language-ats, microlens, optparse-generic, system-filepath
+     , cpphs, criterion, deepseq, haskell-src-exts, hspec
+     , hspec-dirstream, language-ats, microlens, optparse-generic
+     , system-filepath
      }:
      mkDerivation {
        pname = "hs2ats";
-       version = "0.4.0.0";
-       sha256 = "1564xybdqli5i3096xmccy6z0xgm5yvfmjmz60r9ny3h54ahlj7r";
+       version = "0.5.0.0";
+       sha256 = "0ga90mkz11iis5knd51dqpqd4qyj6fwl15nbdbwzlynpk0wsdsga";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
-         ansi-wl-pprint base casing composition-prelude deepseq
+         ansi-wl-pprint base casing composition-prelude cpphs deepseq
          haskell-src-exts language-ats microlens
        ];
        executableHaskellDepends = [ base optparse-generic ];
@@ -114182,6 +114403,29 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {seccomp = null;};
 
+  "hssh" = callPackage
+    ({ mkDerivation, async, base, bytestring, cereal, containers
+     , cryptonite, data-default, memory, stm, tasty, tasty-hunit
+     , tasty-quickcheck
+     }:
+     mkDerivation {
+       pname = "hssh";
+       version = "0.1.0.0";
+       sha256 = "00g87418fhzcxf1xmrj9s40g6i1cgjx65ki027sqgkss49w1w6ig";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         async base bytestring cereal containers cryptonite data-default
+         memory stm
+       ];
+       testHaskellDepends = [
+         async base bytestring cereal containers cryptonite data-default
+         memory stm tasty tasty-hunit tasty-quickcheck
+       ];
+       description = "SSH protocol implementation";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
   "hsshellscript" = callPackage
     ({ mkDerivation, base, c2hs, directory, parsec, random, unix }:
      mkDerivation {
@@ -117583,6 +117827,30 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "hw-prim_0_6_2_18" = callPackage
+    ({ mkDerivation, base, bytestring, criterion, directory, exceptions
+     , hedgehog, hspec, hw-hspec-hedgehog, mmap, QuickCheck, semigroups
+     , transformers, vector
+     }:
+     mkDerivation {
+       pname = "hw-prim";
+       version = "0.6.2.18";
+       sha256 = "1sm6rji0vv3ddi4sjp1q8nz271a084xpnv86n0adqzvd7b7sihip";
+       libraryHaskellDepends = [
+         base bytestring mmap semigroups transformers vector
+       ];
+       testHaskellDepends = [
+         base bytestring directory exceptions hedgehog hspec
+         hw-hspec-hedgehog mmap QuickCheck semigroups transformers vector
+       ];
+       benchmarkHaskellDepends = [
+         base bytestring criterion mmap semigroups transformers vector
+       ];
+       description = "Primitive functions and data types";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "hw-prim-bits" = callPackage
     ({ mkDerivation, base, criterion, hedgehog, hspec, hw-hedgehog
      , hw-hspec-hedgehog, QuickCheck, vector
@@ -117731,8 +117999,8 @@ self: {
      }:
      mkDerivation {
        pname = "hw-streams";
-       version = "0.0.0.4";
-       sha256 = "08dmcbvw3z53plzgq5z3pa9ns9rjj0xs9rx70pyfrqrrc2f98hwi";
+       version = "0.0.0.5";
+       sha256 = "0qhpkgxip9bnx6bcg1cnz9gbnwifkp9vinvp89152h720rsawh4i";
        libraryHaskellDepends = [
          base bytestring ghc-prim hw-bits hw-prim mmap primitive semigroups
          transformers vector
@@ -122172,8 +122440,8 @@ self: {
      }:
      mkDerivation {
        pname = "intero";
-       version = "0.1.32";
-       sha256 = "0xk693yhq2hkilznjzsszamvg7pg1l0qyb2y17ffr2s966i4pfr0";
+       version = "0.1.34";
+       sha256 = "02yq6rxg50za2lcsf6hvld5f1ab4q91kmw74j6kngm7921fa8fi3";
        isLibrary = false;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -122437,15 +122705,15 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
-  "intro_0_5_1_0" = callPackage
+  "intro_0_5_2_1" = callPackage
     ({ mkDerivation, base, bytestring, containers, deepseq, dlist
      , extra, hashable, lens, mtl, QuickCheck, safe, text, transformers
      , unordered-containers, writer-cps-mtl
      }:
      mkDerivation {
        pname = "intro";
-       version = "0.5.1.0";
-       sha256 = "0gsj5l0vgvpbdw2vwlr9r869jwc08lqbypp24g33dlnd338pjxzs";
+       version = "0.5.2.1";
+       sha256 = "0i5cpa5jx82nb1gi1wdhgnbmxlb7s4nbya46k6byajf7g50i5qp8";
        libraryHaskellDepends = [
          base bytestring containers deepseq dlist extra hashable mtl safe
          text transformers unordered-containers writer-cps-mtl
@@ -122559,6 +122827,8 @@ self: {
        pname = "invariant";
        version = "0.5.1";
        sha256 = "0aqj7z55632qdg45074kgn9qfdxzb0a2f8lgjzr0l0i4mm2rr37b";
+       revision = "1";
+       editedCabalFile = "100gsacbpal53khj94m5qs4aq70hbsp4dz4065czfm49ysd4yqq4";
        libraryHaskellDepends = [
          array base bifunctors comonad containers contravariant ghc-prim
          profunctors semigroups StateVar stm tagged template-haskell
@@ -130164,13 +130434,17 @@ self: {
      }) {};
 
   "language-elm" = callPackage
-    ({ mkDerivation, base, hspec, MissingH, mtl, pretty, protolude }:
+    ({ mkDerivation, base, doctest, hspec, MissingH, mtl, pretty
+     , protolude
+     }:
      mkDerivation {
        pname = "language-elm";
-       version = "0.1.0.3";
-       sha256 = "07pyj3ibrpa3mrqn6skjpk0w44hi32mm0c08yqpnql3qv2xy4wcz";
+       version = "0.1.1.0";
+       sha256 = "0hg9b8cyw08gwbsdmqhadnx0clj3rvjavrd3hw597bh2iss3rafl";
        libraryHaskellDepends = [ base MissingH mtl pretty protolude ];
+       libraryToolDepends = [ doctest ];
        testHaskellDepends = [ base hspec mtl pretty protolude ];
+       testToolDepends = [ doctest ];
        description = "Generate elm code";
        license = stdenv.lib.licenses.bsd3;
        hydraPlatforms = stdenv.lib.platforms.none;
@@ -132529,8 +132803,8 @@ self: {
      }:
      mkDerivation {
        pname = "lentil";
-       version = "1.1.0.0";
-       sha256 = "0qw6nvhlczqywwzinsj0x5p2xw8490bbizl2lmj48dr71mndxdz0";
+       version = "1.1.0.1";
+       sha256 = "1psb3ywbzg6k0cir5bxphjqmbzd0n1l2w3skkr31px79haa4wbm7";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
@@ -141302,7 +141576,7 @@ self: {
        license = stdenv.lib.licenses.bsd2;
      }) {};
 
-  "megaparsec_7_0_2" = callPackage
+  "megaparsec_7_0_3" = callPackage
     ({ mkDerivation, base, bytestring, case-insensitive, containers
      , criterion, deepseq, hspec, hspec-expectations, mtl
      , parser-combinators, QuickCheck, scientific, text, transformers
@@ -141310,8 +141584,8 @@ self: {
      }:
      mkDerivation {
        pname = "megaparsec";
-       version = "7.0.2";
-       sha256 = "1ny54saxiz0md50mp24gz267gmqjbl8d8b1zi74hi6bcxyhzd278";
+       version = "7.0.3";
+       sha256 = "1zngs6x7d1yp192pg8b0j5banq4y1vr1fwh1mxrxx0834bmqrll0";
        libraryHaskellDepends = [
          base bytestring case-insensitive containers deepseq mtl
          parser-combinators scientific text transformers
@@ -145988,12 +146262,17 @@ self: {
      }) {};
 
   "monopati" = callPackage
-    ({ mkDerivation, base, directory, free, split }:
+    ({ mkDerivation, base, directory, free, hedgehog, split
+     , transformers
+     }:
      mkDerivation {
        pname = "monopati";
-       version = "0.1.2";
-       sha256 = "1bimppfh14754a8dra6cjd2ricdyry5fmm0shryf974h9l6wbrp8";
+       version = "0.1.3";
+       sha256 = "1g7n1m6df2c9rl99fii7x4a7z3xwv2mcvxd96gg1maji9709chqb";
        libraryHaskellDepends = [ base directory free split ];
+       testHaskellDepends = [
+         base directory free hedgehog split transformers
+       ];
        description = "Well-typed paths";
        license = stdenv.lib.licenses.bsd3;
      }) {};
@@ -147415,6 +147694,44 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "multilinear" = callPackage
+    ({ mkDerivation, base, containers, criterion, deepseq, mwc-random
+     , primitive, statistics, vector
+     }:
+     mkDerivation {
+       pname = "multilinear";
+       version = "0.2.2.1";
+       sha256 = "0clqjf37gsgkc2lghrvdqjpzxxx1ly4zymkcflaph5x3klqlv4xy";
+       libraryHaskellDepends = [
+         base containers deepseq mwc-random primitive statistics vector
+       ];
+       testHaskellDepends = [ base criterion deepseq ];
+       benchmarkHaskellDepends = [ base criterion deepseq ];
+       description = "Comprehensive and efficient (multi)linear algebra implementation";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
+  "multilinear-io" = callPackage
+    ({ mkDerivation, aeson, base, bytestring, cereal, cereal-vector
+     , criterion, csv-enumerator, deepseq, either, multilinear
+     , transformers, vector, zlib
+     }:
+     mkDerivation {
+       pname = "multilinear-io";
+       version = "0.2.1.2";
+       sha256 = "12kydrh8rzvwlgd634x6swd1yv9pyxa23yh2yxj86mnisb467llj";
+       libraryHaskellDepends = [
+         aeson base bytestring cereal cereal-vector csv-enumerator either
+         multilinear transformers vector zlib
+       ];
+       testHaskellDepends = [ base either multilinear transformers ];
+       benchmarkHaskellDepends = [
+         base criterion deepseq either multilinear transformers
+       ];
+       description = "Input/output capability for multilinear package";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "multimap" = callPackage
     ({ mkDerivation, base, containers }:
      mkDerivation {
@@ -148958,6 +149275,68 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "n2o" = callPackage
+    ({ mkDerivation, base, binary, bytestring, containers, hspec, text
+     }:
+     mkDerivation {
+       pname = "n2o";
+       version = "0.11.1";
+       sha256 = "0yvgis2v2jgdny50py8xmc9b1p2zi5kjgf45xsgsyyhzjyr30kb7";
+       libraryHaskellDepends = [ base binary bytestring containers text ];
+       testHaskellDepends = [ base hspec ];
+       description = "Abstract Protocol Loop";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
+  "n2o-nitro" = callPackage
+    ({ mkDerivation, base, base64-bytestring, binary, bytestring
+     , containers, n2o, text
+     }:
+     mkDerivation {
+       pname = "n2o-nitro";
+       version = "0.11.2";
+       sha256 = "1vh0r03h0k60z4q722pw4h5q0l7l56fmyp57im0nankci8vj0s38";
+       libraryHaskellDepends = [
+         base base64-bytestring binary bytestring containers n2o text
+       ];
+       description = "Nitro Elements, Events and Actions";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
+  "n2o-protocols" = callPackage
+    ({ mkDerivation, base, base64-bytestring, binary, bytestring
+     , containers, n2o, n2o-nitro, time
+     }:
+     mkDerivation {
+       pname = "n2o-protocols";
+       version = "0.11.2";
+       sha256 = "1w5r99k9wvhbwvx0hzgpn1aahhnb84ib0n7xgq1ybpgy3s9cggzk";
+       libraryHaskellDepends = [
+         base base64-bytestring binary bytestring containers n2o n2o-nitro
+         time
+       ];
+       description = "N2O Protocols Starter Pack";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
+  "n2o-web" = callPackage
+    ({ mkDerivation, attoparsec, base, base64-bytestring, binary
+     , bytestring, case-insensitive, containers, n2o, n2o-protocols
+     , network, text, websockets
+     }:
+     mkDerivation {
+       pname = "n2o-web";
+       version = "0.11.2";
+       sha256 = "0d01lsfd2rwavzm01bkk3020r0wpfqyyqjbdf1pc8hw1im3843p6";
+       libraryHaskellDepends = [
+         attoparsec base base64-bytestring binary bytestring
+         case-insensitive containers n2o n2o-protocols network text
+         websockets
+       ];
+       description = "N2O adapter for WebSockets";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "nagios-check" = callPackage
     ({ mkDerivation, base, bifunctors, exceptions, hspec, mtl
      , QuickCheck, text
@@ -151891,8 +152270,8 @@ self: {
      }:
      mkDerivation {
        pname = "ngx-export-tools";
-       version = "0.2.1.0";
-       sha256 = "1xavggdab7khi8isvrcf85xlrxhy852fb2ccj7jhmdnfmqzbzyyq";
+       version = "0.2.1.1";
+       sha256 = "0z406bmfk9b1b6knpxwzkwh8n2cpfwgxdh52vghpgjf69c0yrjq1";
        libraryHaskellDepends = [
          aeson base binary bytestring ngx-export safe template-haskell
        ];
@@ -153703,17 +154082,19 @@ self: {
      }) {};
 
   "nuxeo" = callPackage
-    ({ mkDerivation, attoparsec, base, bytestring, conduit
-     , conduit-extra, optparse-applicative, text, time
+    ({ mkDerivation, aeson, attoparsec, base, bytestring, conduit
+     , conduit-extra, http-conduit, http-types, optparse-applicative
+     , text, time, url
      }:
      mkDerivation {
        pname = "nuxeo";
-       version = "0.3.0.2";
-       sha256 = "1h0asiqlffy0wy76q2dz7id6nzsid5nqkmsy1mxdl77zm3d9id4f";
+       version = "0.3.2";
+       sha256 = "0m0rnrcay92vi47dd6cbba5vdjzdrmwb9s7wic95cbsb7wmajc72";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
-         attoparsec base bytestring conduit conduit-extra text time
+         aeson attoparsec base bytestring conduit conduit-extra http-conduit
+         http-types text time url
        ];
        executableHaskellDepends = [ base optparse-applicative text ];
        license = stdenv.lib.licenses.bsd3;
@@ -156279,8 +156660,8 @@ self: {
      }:
      mkDerivation {
        pname = "order-statistic-tree";
-       version = "0.1.1.0";
-       sha256 = "1gcjlvb0wbjkb3vg1bsiqip3wmacpvbc3s96f0vcm67dssdaws80";
+       version = "0.1.1.1";
+       sha256 = "13fhnbsx95w79r7lb1mfah8hj3cp6cqpphy31ajc6gcnzbiaqgk5";
        libraryHaskellDepends = [ base ];
        testHaskellDepends = [ base tasty tasty-hunit tasty-quickcheck ];
        benchmarkHaskellDepends = [
@@ -156323,8 +156704,8 @@ self: {
     ({ mkDerivation, base, containers }:
      mkDerivation {
        pname = "ordered-containers";
-       version = "0.1.0";
-       sha256 = "11smyc3z6xhb8j23wlgvvs8dvr82xmzpx2nhvkzazmgzrx3rf26b";
+       version = "0.1.1";
+       sha256 = "0m86imawwvr0bl18bbv9np8hlhs8ssn4l2dvxswa8f83fm61ai5a";
        libraryHaskellDepends = [ base containers ];
        description = "Set- and Map-like types that remember the order elements were inserted";
        license = stdenv.lib.licenses.bsd3;
@@ -156411,8 +156792,8 @@ self: {
      }:
      mkDerivation {
        pname = "orgmode-parse";
-       version = "0.2.2";
-       sha256 = "1f6wcxkln5ddaa2z7wbkp6wndgq38qv9h1wnn27gqcms02758v2r";
+       version = "0.3.0";
+       sha256 = "0p1lb3ba060nnr3msqzqy0ymbm4i0nkmwix8xx5zz6hir74ix3y9";
        libraryHaskellDepends = [
          aeson attoparsec base bytestring containers free hashable
          old-locale semigroups text thyme unordered-containers
@@ -157629,10 +158010,8 @@ self: {
      }:
      mkDerivation {
        pname = "pandoc-pyplot";
-       version = "1.0.2.0";
-       sha256 = "0q6qj45g8d95z86lqkwpxw7c929x7q68611602mp2ip31dib11xc";
-       revision = "1";
-       editedCabalFile = "0zmvgzqhb4cggsr3m5xw1lhcns586jq5b0s9fhpwq1c3c6k5nq96";
+       version = "1.0.3.0";
+       sha256 = "0nzpww21j79s1ww2q26856m6zq325pz32jjd4hanki7ch0ni2kg2";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -158995,8 +159374,8 @@ self: {
      }:
      mkDerivation {
        pname = "parsers-megaparsec";
-       version = "0.1.0.0";
-       sha256 = "1xn12jbxv72hgkp9xarm9nr9rpqcijlyma47y31jz985r32nhaxj";
+       version = "0.1.0.1";
+       sha256 = "1fgxnxv5ispf7zg40fa35f1n7x7mk1pc8r96sbqpjbzasga79rx8";
        libraryHaskellDepends = [
          base fail megaparsec mtl parsers semigroups text transformers
        ];
@@ -161604,6 +161983,26 @@ self: {
        maintainers = with stdenv.lib.maintainers; [ psibi ];
      }) {};
 
+  "persistent-template-classy" = callPackage
+    ({ mkDerivation, base, lens, persistent, persistent-sqlite
+     , persistent-template, template-haskell, text
+     }:
+     mkDerivation {
+       pname = "persistent-template-classy";
+       version = "0.1.0.1";
+       sha256 = "0ph5cfm5gj6qydv70s9bmb5ynymqnrhqiwcqpd0s87xj2iv9v46a";
+       libraryHaskellDepends = [
+         base lens persistent persistent-sqlite persistent-template
+         template-haskell text
+       ];
+       testHaskellDepends = [
+         base lens persistent persistent-sqlite persistent-template
+         template-haskell text
+       ];
+       description = "Generate classy lens field accessors for persistent models";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "persistent-test" = callPackage
     ({ mkDerivation, aeson, aeson-compat, attoparsec, base
      , base64-bytestring, blaze-builder, blaze-html, blaze-markup
@@ -163959,6 +164358,29 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "pixela" = callPackage
+    ({ mkDerivation, aeson, base, bytestring, data-default, http-client
+     , http-client-tls, http-types, split, text, unordered-containers
+     , uri-encode, vector
+     }:
+     mkDerivation {
+       pname = "pixela";
+       version = "0.1.0.0";
+       sha256 = "02ab3n56j3y93wrwdj8rd3ff9zw9kskily1s9j2yq49zwpjnilpj";
+       revision = "3";
+       editedCabalFile = "0kndzh00saxdinyz5hbqkir9n578fz8db291nqynqpymw6lwkyc3";
+       libraryHaskellDepends = [
+         aeson base bytestring data-default http-client http-client-tls
+         http-types split text unordered-containers uri-encode vector
+       ];
+       testHaskellDepends = [
+         aeson base bytestring data-default http-client http-client-tls
+         http-types split text unordered-containers uri-encode vector
+       ];
+       description = "Pixela client";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "pixelated-avatar-generator" = callPackage
     ({ mkDerivation, async, base, bytestring, cli, hspec, JuicyPixels
      , pureMD5, QuickCheck, random, split
@@ -165677,6 +166099,18 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "port-utils" = callPackage
+    ({ mkDerivation, async, base, hspec, network, stm }:
+     mkDerivation {
+       pname = "port-utils";
+       version = "0.1.0.2";
+       sha256 = "0a27xsz4agm4bf1i8nrsmlz509yv65fvf3a8pzaqm6qxj7ir7g8i";
+       libraryHaskellDepends = [ base network ];
+       testHaskellDepends = [ async base hspec network stm ];
+       description = "Utilities for creating and waiting on ports";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "portable-lines" = callPackage
     ({ mkDerivation, base, bytestring }:
      mkDerivation {
@@ -175656,8 +176090,8 @@ self: {
        pname = "recursion-schemes";
        version = "5.0.3";
        sha256 = "17x0kjl3yqanx234mb838yy21gw4if6qgzpi5l0b17m8llvp086v";
-       revision = "2";
-       editedCabalFile = "13n38bchrkkijvy6jvhjskqn1b2kahfa9rvjvjcdn4bih4ylivk7";
+       revision = "3";
+       editedCabalFile = "05fvpi3dc44h2a097fb9cq1jqdjq2b3sdf5hzfn9g00bid37bb5q";
        libraryHaskellDepends = [
          base base-orphans comonad free template-haskell th-abstraction
          transformers
@@ -181028,15 +181462,15 @@ self: {
      }:
      mkDerivation {
        pname = "rounded";
-       version = "0.1";
-       sha256 = "02xlc369yi8wvf41z4d3291i63rcryl0yjp0k5lkn3c2f0k5w244";
+       version = "0.1.0.1";
+       sha256 = "04abl192vq1xq7kf9fackcb17wjyxw4068fsks3pxm9dd4iymgls";
        libraryHaskellDepends = [
          base ghc-prim hgmp long-double reflection singletons
        ];
        librarySystemDepends = [ gmp mpfr ];
        testHaskellDepends = [ base long-double ];
        description = "Correctly-rounded arbitrary-precision floating-point arithmetic";
-       license = "LGPL";
+       license = stdenv.lib.licenses.bsd3;
      }) {inherit (pkgs) gmp; inherit (pkgs) mpfr;};
 
   "rounding" = callPackage
@@ -181490,6 +181924,17 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "rstream" = callPackage
+    ({ mkDerivation, base, ghc-prim }:
+     mkDerivation {
+       pname = "rstream";
+       version = "0.1.0.0";
+       sha256 = "14l2jww91w993b61xn1m9y9wh27dvy1l1x2fh7g9f0l8mc5a9dpv";
+       libraryHaskellDepends = [ base ghc-prim ];
+       description = "stream-fusion framework from vector";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "rtcm" = callPackage
     ({ mkDerivation, aeson, array, base, base64-bytestring
      , basic-prelude, binary, binary-bits, binary-conduit, bytestring
@@ -188261,7 +188706,7 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
-  "serverless-haskell_0_8_1" = callPackage
+  "serverless-haskell_0_8_2" = callPackage
     ({ mkDerivation, aeson, aeson-casing, aeson-extra, amazonka-core
      , amazonka-kinesis, amazonka-s3, base, bytestring, case-insensitive
      , hspec, hspec-discover, http-types, iproute, lens, raw-strings-qq
@@ -188269,8 +188714,8 @@ self: {
      }:
      mkDerivation {
        pname = "serverless-haskell";
-       version = "0.8.1";
-       sha256 = "1s5i2l57s0crpk3lysdw0v7kvfx567bhl0v5i18mdsa331bifcpd";
+       version = "0.8.2";
+       sha256 = "1ia1vjiw71qkqdpbna2jgxznwlhbh184fr5m95dcyl5kwwlb3nb8";
        libraryHaskellDepends = [
          aeson aeson-casing aeson-extra amazonka-core amazonka-kinesis
          amazonka-s3 base bytestring case-insensitive http-types iproute
@@ -189198,8 +189643,8 @@ self: {
      }:
      mkDerivation {
        pname = "shake-ats";
-       version = "1.10.1.0";
-       sha256 = "1b5mbb3azjn2wwagciayd5lyb6jd2siwn1l9ispnqrkrh1bqgzb5";
+       version = "1.10.2.0";
+       sha256 = "0kc7yy2qv4d2n3j0qwsg37ga9yyb380d6zni08l1jabrl84maly8";
        libraryHaskellDepends = [
          base binary dependency directory hs2ats language-ats microlens
          shake shake-c shake-cabal shake-ext text
@@ -190004,6 +190449,27 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "shh" = callPackage
+    ({ mkDerivation, async, base, deepseq, directory, filepath, mtl
+     , process, split, tasty, tasty-hunit, tasty-quickcheck
+     , template-haskell, unix
+     }:
+     mkDerivation {
+       pname = "shh";
+       version = "0.1.0.0";
+       sha256 = "0ixvfwrz1bsj1c2ln7fhvf6wawf75nzqfb784xgral33hmflm518";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         async base deepseq directory filepath mtl process split
+         template-haskell unix
+       ];
+       executableHaskellDepends = [ base ];
+       testHaskellDepends = [ base tasty tasty-hunit tasty-quickcheck ];
+       description = "Simple shell scripting from Haskell";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "shift" = callPackage
     ({ mkDerivation, ansi-terminal, base, binary, bytestring
      , composition-prelude, data-default, microlens
@@ -194872,8 +195338,8 @@ self: {
      }:
      mkDerivation {
        pname = "socket";
-       version = "0.8.1.0";
-       sha256 = "1sbxcs1fmd7x95yk7sqv3q6gg2azn77l6sngiiv692966a0bxba0";
+       version = "0.8.2.0";
+       sha256 = "176px9n2f8mnxi3r2sqshrpbp7i11fskch1nkjhgqzq917sz0zgb";
        libraryHaskellDepends = [ base bytestring ];
        testHaskellDepends = [
          async base bytestring QuickCheck tasty tasty-hunit tasty-quickcheck
@@ -201243,8 +201709,8 @@ self: {
      }:
      mkDerivation {
        pname = "structured-cli";
-       version = "2.2.0.0";
-       sha256 = "1ia9xbbshzx0p69i8gq3y88qbg60cks52kb6hxm2ylkm7jnzgxzj";
+       version = "2.2.1.0";
+       sha256 = "1b75wnmprbb4sfnwyn5arc205ad5rlyz4hv63ai35i9iryax875s";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -205919,6 +206385,8 @@ self: {
        pname = "tdigest";
        version = "0.2.1";
        sha256 = "0kmqmzjcs406hv2fv9bkfayxpsd41dbry8bpkhy4y1jdgh33hvnl";
+       revision = "1";
+       editedCabalFile = "1jrq22j9jbvx31pspwjvyb539gix7vfb8cinqkkb2abmr0jrhibn";
        setupHaskellDepends = [ base Cabal cabal-doctest ];
        libraryHaskellDepends = [
          base base-compat binary deepseq reducers semigroupoids transformers
@@ -208393,6 +208861,8 @@ self: {
        pname = "text-show";
        version = "3.7.5";
        sha256 = "1by89i3c6qyjh7jjld06wb2sphb236rbvwb1mmvq8f6mxliiyf1r";
+       revision = "1";
+       editedCabalFile = "1v8czpi9mn54850k0pilqh1f3yfr5n5vykmg5k57wmrdpx25vkws";
        libraryHaskellDepends = [
          array base base-compat-batteries bifunctors bytestring
          bytestring-builder containers contravariant generic-deriving
@@ -211983,8 +212453,8 @@ self: {
      }:
      mkDerivation {
        pname = "toodles";
-       version = "0.1.0.16";
-       sha256 = "1xr9cl69v5m08d44xgprlpk9j5j2lby84lzcp3fjzlvfdnnx0q72";
+       version = "0.1.1";
+       sha256 = "1g806bdm6l52yg6q3jni94iacp7sfdacfx6rddnsdzqb0cj6ym0w";
        isLibrary = false;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -217582,7 +218052,7 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
-  "universum_1_4_0" = callPackage
+  "universum_1_5_0" = callPackage
     ({ mkDerivation, base, bytestring, containers, deepseq, doctest
      , gauge, ghc-prim, Glob, hashable, hedgehog, microlens
      , microlens-mtl, mtl, safe-exceptions, stm, tasty, tasty-hedgehog
@@ -217590,8 +218060,8 @@ self: {
      }:
      mkDerivation {
        pname = "universum";
-       version = "1.4.0";
-       sha256 = "1qhpz4wlvhrdjb1pvs0lgm0pghrciqasb3378zw32lqh3pv2pnrk";
+       version = "1.5.0";
+       sha256 = "17rzi17k2wj3p6dzd0dggzgyhh0c2mma4znkci1hqcihwr6rrljk";
        libraryHaskellDepends = [
          base bytestring containers deepseq ghc-prim hashable microlens
          microlens-mtl mtl safe-exceptions stm text transformers
@@ -218444,8 +218914,8 @@ self: {
     ({ mkDerivation, aeson, base, bytestring, text, uri-bytestring }:
      mkDerivation {
        pname = "uri-bytestring-aeson";
-       version = "0.1.0.6";
-       sha256 = "02pgzkgmcam06qy1lqbmmjbah95b08hl5d5q61smmx78f83mzgfq";
+       version = "0.1.0.7";
+       sha256 = "16zg0fsxzdii72119jyhn2g2gy7j6pk7r8i7w5hk9a353kmvb43y";
        libraryHaskellDepends = [
          aeson base bytestring text uri-bytestring
        ];
@@ -221760,23 +222230,24 @@ self: {
 
   "voicebase" = callPackage
     ({ mkDerivation, aeson, base, bytestring, filepath, HsOpenSSL
-     , http-client, http-client-openssl, json-autotype, lens, mime-types
-     , optparse-applicative, text, wreq
+     , hspec, http-client, http-client-openssl, lens, lens-aeson
+     , mime-types, mtl, optparse-applicative, roundtrip, roundtrip-aeson
+     , text, wreq
      }:
      mkDerivation {
        pname = "voicebase";
-       version = "0.1.1.4";
-       sha256 = "17yrdrvvd3kyd6qnkfhqdwjxc5ripmzwa056rvn38ny3cxcfkd78";
+       version = "0.2.0.0";
+       sha256 = "0ih0z27vz7767gr11lz227vb84i2kwc6wn9z1yd0zma5nj8x73hw";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
          aeson base bytestring HsOpenSSL http-client http-client-openssl
-         json-autotype lens mime-types text wreq
+         lens lens-aeson mime-types mtl roundtrip roundtrip-aeson text wreq
        ];
        executableHaskellDepends = [
          aeson base bytestring filepath mime-types optparse-applicative text
        ];
-       testHaskellDepends = [ aeson base ];
+       testHaskellDepends = [ aeson base hspec roundtrip-aeson ];
        description = "Upload audio files to voicebase to get a transcription";
        license = stdenv.lib.licenses.bsd3;
      }) {};
@@ -222062,6 +222533,38 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "waargonaut" = callPackage
+    ({ mkDerivation, attoparsec, base, bifunctors, bytestring, Cabal
+     , cabal-doctest, containers, contravariant, digit, directory
+     , distributive, doctest, errors, filepath, generics-sop, hedgehog
+     , hoist-error, hw-balancedparens, hw-bits, hw-json, hw-prim
+     , hw-rankselect, lens, mmorph, mtl, nats, parsers, scientific
+     , semigroups, tagged, tasty, tasty-expected-failure, tasty-hedgehog
+     , tasty-hunit, template-haskell, text, transformers, vector
+     , witherable, wl-pprint-annotated, zippers
+     }:
+     mkDerivation {
+       pname = "waargonaut";
+       version = "0.1.0.0";
+       sha256 = "0y3h1kgh7n639h714ji4fycj6b8vcsa79jfv36w995p9gbjxxdjc";
+       setupHaskellDepends = [ base Cabal cabal-doctest ];
+       libraryHaskellDepends = [
+         base bifunctors bytestring containers contravariant digit
+         distributive errors generics-sop hoist-error hw-balancedparens
+         hw-bits hw-json hw-prim hw-rankselect lens mmorph mtl nats parsers
+         scientific semigroups tagged text transformers vector witherable
+         wl-pprint-annotated zippers
+       ];
+       testHaskellDepends = [
+         attoparsec base bytestring digit directory distributive doctest
+         filepath generics-sop hedgehog lens scientific semigroups tagged
+         tasty tasty-expected-failure tasty-hedgehog tasty-hunit
+         template-haskell text vector zippers
+       ];
+       description = "JSON wrangling";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "wacom-daemon" = callPackage
     ({ mkDerivation, aeson, base, bytestring, containers, directory
      , filepath, Glob, libnotify, process, select, text, udev

From 1bc120fa5faf996a248bdbb4cb7c4327ca368e06 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Fri, 2 Nov 2018 17:29:06 +0100
Subject: [PATCH 0334/1129] git-annex: update sha256 hash for new version
 7.20181031

---
 pkgs/development/haskell-modules/configuration-common.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix
index 33f498d922b0..08597e4644c1 100644
--- a/pkgs/development/haskell-modules/configuration-common.nix
+++ b/pkgs/development/haskell-modules/configuration-common.nix
@@ -86,7 +86,7 @@ self: super: {
       name = "git-annex-${super.git-annex.version}-src";
       url = "git://git-annex.branchable.com/";
       rev = "refs/tags/" + super.git-annex.version;
-      sha256 = "069w4gdb104lc3vp48k3wywmgql56yc5g2g2i240xrr88in3qvqw";
+      sha256 = "0mgmxcr36b86jh56my3vhp9y4cravi0hbppa463q3c21a1cmjc19";
     };
   }).override {
     dbus = if pkgs.stdenv.isLinux then self.dbus else null;

From f648605b4e521667baeeda71d8bf5573100bdb7b Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Fri, 2 Nov 2018 17:48:16 +0100
Subject: [PATCH 0335/1129] all-cabal-hashes: update to Hackage at
 2018-11-02T16:36:33Z

---
 pkgs/data/misc/hackage/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/data/misc/hackage/default.nix b/pkgs/data/misc/hackage/default.nix
index 0be9abba71d6..5fac16067882 100644
--- a/pkgs/data/misc/hackage/default.nix
+++ b/pkgs/data/misc/hackage/default.nix
@@ -1,6 +1,6 @@
 { fetchurl }:
 
 fetchurl {
-  url = "https://github.com/commercialhaskell/all-cabal-hashes/archive/420a405e4dbccd78b2a471b632b9fe1a1e04502b.tar.gz";
-  sha256 = "01vdbp1yh2s0afijz9ap4590mlpiica7l6k0mpfc0jwzymn9w86n";
+  url = "https://github.com/commercialhaskell/all-cabal-hashes/archive/98ec0eee2ddef5d4a00e2ac4a95e8add46d23b69.tar.gz";
+  sha256 = "0svcaaflqi5c815z3yrh61bjny1jnwp42sylmsnwryjldqvizc1a";
 }

From 95a1054a48a26ed4a5de8730d1ccb8c21fd6d3df Mon Sep 17 00:00:00 2001
From: Raphael Borun Das Gupta <git@raphael.dasgupta.ch>
Date: Sun, 28 Oct 2018 10:42:19 +0100
Subject: [PATCH 0336/1129] protozero: init at 1.6.3

---
 .../libraries/protozero/default.nix           | 22 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 24 insertions(+)
 create mode 100644 pkgs/development/libraries/protozero/default.nix

diff --git a/pkgs/development/libraries/protozero/default.nix b/pkgs/development/libraries/protozero/default.nix
new file mode 100644
index 000000000000..c2d8f5e74c90
--- /dev/null
+++ b/pkgs/development/libraries/protozero/default.nix
@@ -0,0 +1,22 @@
+{ stdenv, fetchFromGitHub, cmake }:
+
+stdenv.mkDerivation rec {
+  name = "protozero-${version}";
+  version = "1.6.3";
+
+  src = fetchFromGitHub {
+    owner = "mapbox";
+    repo = "protozero";
+    rev = "v${version}";
+    sha256 = "0lalk6hp7hqfn4fhhl2zb214idwm4y8dj32vi383arckzmsryhiw";
+  };
+
+  nativeBuildInputs = [ cmake ];
+
+  meta = with stdenv.lib; {
+    description = "Minimalistic protocol buffer decoder and encoder in C++";
+    homepage = "https://github.com/mapbox/protozero";
+    license = with licenses; [ bsd2 asl20 ];
+    maintainers = with maintainers; [ das-g ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index dc12e6b0c7e5..01e40a995b37 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -11772,6 +11772,8 @@ with pkgs;
 
   protobufc = callPackage ../development/libraries/protobufc/1.3.nix { };
 
+  protozero = callPackage ../development/libraries/protozero { };
+
   flatbuffers = callPackage ../development/libraries/flatbuffers { };
 
   gnupth = callPackage ../development/libraries/pth { };

From 2266f2014b41e29ccf8c70a67a0af0133f8eb270 Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Fri, 2 Nov 2018 13:31:20 -0500
Subject: [PATCH 0337/1129] nixos/postgresql: add myself as maintainer

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 nixos/modules/services/databases/postgresql.nix | 2 +-
 pkgs/servers/sql/postgresql/default.nix         | 8 ++++----
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/nixos/modules/services/databases/postgresql.nix b/nixos/modules/services/databases/postgresql.nix
index 6edb1503c233..f592be0e768b 100644
--- a/nixos/modules/services/databases/postgresql.nix
+++ b/nixos/modules/services/databases/postgresql.nix
@@ -271,5 +271,5 @@ in
   };
 
   meta.doc = ./postgresql.xml;
-
+  meta.maintainers = with lib.maintainers; [ thoughtpolice ];
 }
diff --git a/pkgs/servers/sql/postgresql/default.nix b/pkgs/servers/sql/postgresql/default.nix
index b81b4340d767..f8bf08b55b7d 100644
--- a/pkgs/servers/sql/postgresql/default.nix
+++ b/pkgs/servers/sql/postgresql/default.nix
@@ -89,11 +89,11 @@ let
     };
 
     meta = with lib; {
-      homepage = https://www.postgresql.org;
+      homepage    = https://www.postgresql.org;
       description = "A powerful, open source object-relational database system";
-      license = licenses.postgresql;
-      maintainers = [ maintainers.ocharles ];
-      platforms = platforms.unix;
+      license     = licenses.postgresql;
+      maintainers = with maintainers; [ ocharles thoughtpolice ];
+      platforms   = platforms.unix;
     };
   });
 

From 648f4a2769d46ec532c259ed082e36193ff7349e Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Mon, 6 Aug 2018 10:17:54 -0500
Subject: [PATCH 0338/1129] nixpkgs: tidy up pgjwt package

This makes pgjwt take a dummy 'postgresql' argument, which it does not *need*
in the buildInputs (it is purely a SQL extension with no C code). However, this
argument will be necessary for an upcoming change that will parameterize the
extensions over a particular PostgreSQL version.

It also does some tiny cleanup, setting a null build phase.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 pkgs/servers/sql/postgresql/pgjwt/default.nix | 16 ++++++++++------
 1 file changed, 10 insertions(+), 6 deletions(-)

diff --git a/pkgs/servers/sql/postgresql/pgjwt/default.nix b/pkgs/servers/sql/postgresql/pgjwt/default.nix
index 3e01d9bfe2ca..ab7ba8943a7b 100644
--- a/pkgs/servers/sql/postgresql/pgjwt/default.nix
+++ b/pkgs/servers/sql/postgresql/pgjwt/default.nix
@@ -1,19 +1,23 @@
-{ stdenv, fetchFromGitHub }:
+{ stdenv, fetchFromGitHub, postgresql }:
+
 stdenv.mkDerivation rec {
-  name = "pgjwt-${version}";
+  name    = "pgjwt-${version}";
   version = "unstable-2017-04-24";
+
   src = fetchFromGitHub {
-    owner = "michelp";
-    repo = "pgjwt";
-    rev = "546a2911027b716586e241be7fd4c6f1785237cd";
+    owner  = "michelp";
+    repo   = "pgjwt";
+    rev    = "546a2911027b716586e241be7fd4c6f1785237cd";
     sha256 = "1riz0xvwb6y02j0fljbr9hcbqb2jqs4njlivmavy9ysbcrrv1vrf";
   };
-  dontBuild = true;
+
+  buildPhase = ":";
   installPhase = ''
     mkdir -p $out/bin  # current postgresql extension mechanism in nixos requires bin directory
     mkdir -p $out/share/extension
     cp pg*sql *.control $out/share/extension
   '';
+
   meta = with stdenv.lib; {
     description = "PostgreSQL implementation of JSON Web Tokens";
     longDescription = ''

From 32dcb6051a9a2fa687283f4883d3552c3a46c081 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Fri, 2 Nov 2018 19:59:05 +0100
Subject: [PATCH 0339/1129] haskell-brick: drop obsolete jailbreak for
 ghc-8.6.x

---
 pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
index b92777276504..fa14d21afa28 100644
--- a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
+++ b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
@@ -46,7 +46,7 @@ self: super: {
 
   # LTS-12.x versions do not compile.
   base-orphans = self.base-orphans_0_8;
-  brick = doJailbreak super.brick_0_41_2;      # https://github.com/jtdaugherty/brick/pull/188
+  brick = self.brick_0_41_2;
   cassava-megaparsec = doJailbreak super.cassava-megaparsec;
   config-ini = doJailbreak super.config-ini;   # https://github.com/aisamanra/config-ini/issues/18
   contravariant = self.contravariant_1_5;

From 2f0de54ddbfdb03540128f8d2abcc47221d42b25 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Fri, 2 Nov 2018 20:13:55 +0100
Subject: [PATCH 0340/1129] Drop obsolete GHC versions 7.10.3, 8.0.2, and
 8.4.3.

We keep the latest minor release of each one of the last 3 major releases,
which currently are GHC versions 8.2.2, 8.4.4, and 8.6.1. We also have
ghc-HEAD, but this doesn't count.

Dropping these compilers implied that we have to drop the corresponding
versions of ghcjs, too. We can also drop a shitload of obsolete compiler
patches that newer versions no longer need.

At some point, we can probably simplify the generic builder, too.
---
 pkgs/development/compilers/ghc/7.10.3.nix     | 194 -------
 pkgs/development/compilers/ghc/8.0.2.nix      | 201 -------
 pkgs/development/compilers/ghc/8.4.3.nix      | 247 --------
 .../ghc/ghc-8.0.2-no-cpp-warnings.patch       |  23 -
 .../compilers/ghc/ghc-gold-linker.patch       |  54 --
 .../compilers/ghc/ghc-no-madv-free.patch      |  18 -
 .../compilers/ghc/relocation.patch            |  27 -
 .../compilers/ghcjs/7.10/boot.patch           | 104 ----
 .../compilers/ghcjs/7.10/default.nix          |  50 --
 .../compilers/ghcjs/7.10/shims.nix            |   7 -
 .../compilers/ghcjs/7.10/stage2.nix           | 344 -----------
 .../compilers/ghcjs/8.0/boot.patch            |  86 ---
 .../compilers/ghcjs/8.0/default.nix           |  50 --
 .../development/compilers/ghcjs/8.0/shims.nix |   7 -
 .../compilers/ghcjs/8.0/stage2.nix            | 545 ------------------
 .../configuration-ghc-7.10.x.nix              | 239 --------
 .../configuration-ghc-8.0.x.nix               |  91 ---
 .../configuration-halvm-2.4.0.nix             |  59 --
 pkgs/top-level/haskell-packages.nix           |  40 --
 19 files changed, 2386 deletions(-)
 delete mode 100644 pkgs/development/compilers/ghc/7.10.3.nix
 delete mode 100644 pkgs/development/compilers/ghc/8.0.2.nix
 delete mode 100644 pkgs/development/compilers/ghc/8.4.3.nix
 delete mode 100644 pkgs/development/compilers/ghc/ghc-8.0.2-no-cpp-warnings.patch
 delete mode 100644 pkgs/development/compilers/ghc/ghc-gold-linker.patch
 delete mode 100644 pkgs/development/compilers/ghc/ghc-no-madv-free.patch
 delete mode 100644 pkgs/development/compilers/ghc/relocation.patch
 delete mode 100644 pkgs/development/compilers/ghcjs/7.10/boot.patch
 delete mode 100644 pkgs/development/compilers/ghcjs/7.10/default.nix
 delete mode 100644 pkgs/development/compilers/ghcjs/7.10/shims.nix
 delete mode 100644 pkgs/development/compilers/ghcjs/7.10/stage2.nix
 delete mode 100644 pkgs/development/compilers/ghcjs/8.0/boot.patch
 delete mode 100644 pkgs/development/compilers/ghcjs/8.0/default.nix
 delete mode 100644 pkgs/development/compilers/ghcjs/8.0/shims.nix
 delete mode 100644 pkgs/development/compilers/ghcjs/8.0/stage2.nix
 delete mode 100644 pkgs/development/haskell-modules/configuration-ghc-7.10.x.nix
 delete mode 100644 pkgs/development/haskell-modules/configuration-ghc-8.0.x.nix
 delete mode 100644 pkgs/development/haskell-modules/configuration-halvm-2.4.0.nix

diff --git a/pkgs/development/compilers/ghc/7.10.3.nix b/pkgs/development/compilers/ghc/7.10.3.nix
deleted file mode 100644
index b69ae80d0db5..000000000000
--- a/pkgs/development/compilers/ghc/7.10.3.nix
+++ /dev/null
@@ -1,194 +0,0 @@
-{ stdenv, targetPackages
-
-# build-tools
-, bootPkgs
-, coreutils, fetchurl, perl
-, docbook_xsl, docbook_xml_dtd_45, docbook_xml_dtd_42, libxml2, libxslt
-
-, libiconv ? null, ncurses
-
-, useLLVM ? !stdenv.targetPlatform.isx86
-, # LLVM is conceptually a run-time-only depedendency, but for
-  # non-x86, we need LLVM to bootstrap later stages, so it becomes a
-  # build-time dependency too.
-  buildLlvmPackages, llvmPackages
-
-, # If enabled, GHC will be built with the GPL-free but slower integer-simple
-  # library instead of the faster but GPLed integer-gmp library.
-  enableIntegerSimple ? !(stdenv.lib.any (stdenv.lib.meta.platformMatch stdenv.hostPlatform) gmp.meta.platforms), gmp
-
-, # If enabled, use -fPIC when compiling static libs.
-  enableRelocatedStaticLibs ? stdenv.targetPlatform != stdenv.hostPlatform
-
-, # Whether to build dynamic libs for the standard library (on the target
-  # platform). Static libs are always built.
-  enableShared ? true
-
-, # What flavour to build. An empty string indicates no
-  # specific flavour and falls back to ghc default values.
-  ghcFlavour ? stdenv.lib.optionalString (stdenv.targetPlatform != stdenv.hostPlatform) "perf-cross"
-}:
-
-let
-  inherit (stdenv) buildPlatform hostPlatform targetPlatform;
-
-  inherit (bootPkgs) ghc;
-
-  # TODO(@Ericson2314) Make unconditional
-  targetPrefix = stdenv.lib.optionalString
-    (targetPlatform != hostPlatform)
-    "${targetPlatform.config}-";
-
-  docFixes = fetchurl {
-    url = "https://downloads.haskell.org/~ghc/7.10.3/ghc-7.10.3a.patch";
-    sha256 = "1j45z4kcd3w1rzm4hapap2xc16bbh942qnzzdbdjcwqznsccznf0";
-  };
-
-  buildMK = ''
-    BuildFlavour = ${ghcFlavour}
-    ifneq \"\$(BuildFlavour)\" \"\"
-    include mk/flavours/\$(BuildFlavour).mk
-    endif
-    DYNAMIC_GHC_PROGRAMS = ${if enableShared then "YES" else "NO"}
-  '' + stdenv.lib.optionalString enableIntegerSimple ''
-    INTEGER_LIBRARY = integer-simple
-  '' + stdenv.lib.optionalString (targetPlatform != hostPlatform) ''
-    Stage1Only = YES
-    HADDOCK_DOCS = NO
-  '' + stdenv.lib.optionalString enableRelocatedStaticLibs ''
-    GhcLibHcOpts += -fPIC
-    GhcRtsHcOpts += -fPIC
-  '';
-
-  # Splicer will pull out correct variations
-  libDeps = platform: [ ncurses ]
-    ++ stdenv.lib.optional (!enableIntegerSimple) gmp
-    ++ stdenv.lib.optional (platform.libc != "glibc") libiconv;
-
-  toolsForTarget =
-    if hostPlatform == buildPlatform then
-      [ targetPackages.stdenv.cc ] ++ stdenv.lib.optional useLLVM llvmPackages.llvm
-    else assert targetPlatform == hostPlatform; # build != host == target
-      [ stdenv.cc ] ++ stdenv.lib.optional useLLVM buildLlvmPackages.llvm;
-
-  targetCC = builtins.head toolsForTarget;
-
-in
-stdenv.mkDerivation rec {
-  version = "7.10.3";
-  name = "${targetPrefix}ghc-${version}";
-
-  src = fetchurl {
-    url = "https://downloads.haskell.org/~ghc/${version}/ghc-${version}-src.tar.xz";
-    sha256 = "1vsgmic8csczl62ciz51iv8nhrkm72lyhbz7p7id13y2w7fcx46g";
-  };
-
-  enableParallelBuilding = true;
-
-  outputs = [ "out" "doc" ];
-
-  patches = [
-    docFixes
-    ./relocation.patch
-  ];
-
-  postPatch = "patchShebangs .";
-
-  # GHC is a bit confused on its cross terminology.
-  preConfigure = ''
-    for env in $(env | grep '^TARGET_' | sed -E 's|\+?=.*||'); do
-      export "''${env#TARGET_}=''${!env}"
-    done
-    # GHC is a bit confused on its cross terminology, as these would normally be
-    # the *host* tools.
-    export CC="${targetCC}/bin/${targetCC.targetPrefix}cc"
-    export CXX="${targetCC}/bin/${targetCC.targetPrefix}cxx"
-    export LD="${targetCC.bintools}/bin/${targetCC.bintools.targetPrefix}ld"
-    export AS="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}as"
-    export AR="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ar"
-    export NM="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}nm"
-    export RANLIB="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ranlib"
-    export READELF="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}readelf"
-    export STRIP="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}strip"
-
-    echo -n "${buildMK}" > mk/build.mk
-    sed -i -e 's|-isysroot /Developer/SDKs/MacOSX10.5.sdk||' configure
-  '' + stdenv.lib.optionalString (!stdenv.isDarwin) ''
-    export NIX_LDFLAGS+=" -rpath $out/lib/ghc-${version}"
-  '' + stdenv.lib.optionalString stdenv.isDarwin ''
-    export NIX_LDFLAGS+=" -no_dtrace_dof"
-  '';
-
-  # TODO(@Ericson2314): Always pass "--target" and always prefix.
-  configurePlatforms = [ "build" "host" ]
-    ++ stdenv.lib.optional (targetPlatform != hostPlatform) "target";
-  # `--with` flags for libraries needed for RTS linker
-  configureFlags = [
-    "--datadir=$doc/share/doc/ghc"
-    "--with-curses-includes=${ncurses.dev}/include" "--with-curses-libraries=${ncurses.out}/lib"
-  ] ++ stdenv.lib.optional (targetPlatform == hostPlatform && ! enableIntegerSimple) [
-    "--with-gmp-includes=${gmp.dev}/include" "--with-gmp-libraries=${gmp.out}/lib"
-  ] ++ stdenv.lib.optional (targetPlatform == hostPlatform && hostPlatform.libc != "glibc") [
-    "--with-iconv-includes=${libiconv}/include" "--with-iconv-libraries=${libiconv}/lib"
-  ] ++ stdenv.lib.optionals (targetPlatform != hostPlatform) [
-    "--enable-bootstrap-with-devel-snapshot"
-  ] ++ stdenv.lib.optionals (targetPlatform.isDarwin && targetPlatform.isAarch64) [
-    # fix for iOS: https://www.reddit.com/r/haskell/comments/4ttdz1/building_an_osxi386_to_iosarm64_cross_compiler/d5qvd67/
-    "--disable-large-address-space"
-  ];
-
-  # Make sure we never relax`$PATH` and hooks support for compatability.
-  strictDeps = true;
-
-  nativeBuildInputs = [
-    perl libxml2 libxslt docbook_xsl docbook_xml_dtd_45 docbook_xml_dtd_42
-    ghc bootPkgs.hscolour
-  ];
-
-  # For building runtime libs
-  depsBuildTarget = toolsForTarget;
-
-  buildInputs = libDeps hostPlatform;
-
-  propagatedBuildInputs = [ targetPackages.stdenv.cc ]
-    ++ stdenv.lib.optional useLLVM llvmPackages.llvm;
-
-  depsTargetTarget = map stdenv.lib.getDev (libDeps targetPlatform);
-  depsTargetTargetPropagated = map (stdenv.lib.getOutput "out") (libDeps targetPlatform);
-
-  # required, because otherwise all symbols from HSffi.o are stripped, and
-  # that in turn causes GHCi to abort
-  stripDebugFlags = [ "-S" ] ++ stdenv.lib.optional (!targetPlatform.isDarwin) "--keep-file-symbols";
-
-  hardeningDisable = [ "format" ];
-
-  postInstall = ''
-    # Install the bash completion file.
-    install -D -m 444 utils/completion/ghc.bash $out/share/bash-completion/completions/${targetPrefix}ghc
-
-    # Patch scripts to include "readelf" and "cat" in $PATH.
-    for i in "$out/bin/"*; do
-      test ! -h $i || continue
-      egrep --quiet '^#!' <(head -n 1 $i) || continue
-      sed -i -e '2i export PATH="$PATH:${stdenv.lib.makeBinPath [ targetPackages.stdenv.cc.bintools coreutils ]}"' $i
-    done
-  '';
-
-  passthru = {
-    inherit bootPkgs targetPrefix;
-
-    inherit llvmPackages;
-    inherit enableShared;
-
-    # Our Cabal compiler name
-    haskellCompilerName = "ghc-7.10.3";
-  };
-
-  meta = {
-    homepage = http://haskell.org/ghc;
-    description = "The Glasgow Haskell Compiler";
-    maintainers = with stdenv.lib.maintainers; [ marcweber andres peti ];
-    inherit (ghc.meta) license platforms;
-  };
-
-}
diff --git a/pkgs/development/compilers/ghc/8.0.2.nix b/pkgs/development/compilers/ghc/8.0.2.nix
deleted file mode 100644
index f7422d150ac0..000000000000
--- a/pkgs/development/compilers/ghc/8.0.2.nix
+++ /dev/null
@@ -1,201 +0,0 @@
-{ stdenv, targetPackages
-
-# build-tools
-, bootPkgs
-, coreutils, fetchpatch, fetchurl, perl, sphinx
-
-, libiconv ? null, ncurses
-
-, useLLVM ? !stdenv.targetPlatform.isx86
-, # LLVM is conceptually a run-time-only depedendency, but for
-  # non-x86, we need LLVM to bootstrap later stages, so it becomes a
-  # build-time dependency too.
-  buildLlvmPackages, llvmPackages
-
-, # If enabled, GHC will be built with the GPL-free but slower integer-simple
-  # library instead of the faster but GPLed integer-gmp library.
-  enableIntegerSimple ? !(stdenv.lib.any (stdenv.lib.meta.platformMatch stdenv.hostPlatform) gmp.meta.platforms), gmp
-
-, # If enabled, use -fPIC when compiling static libs.
-  enableRelocatedStaticLibs ? stdenv.targetPlatform != stdenv.hostPlatform
-
-, # Whether to build dynamic libs for the standard library (on the target
-  # platform). Static libs are always built.
-  enableShared ? true
-
-, # What flavour to build. An empty string indicates no
-  # specific flavour and falls back to ghc default values.
-  ghcFlavour ? stdenv.lib.optionalString (stdenv.targetPlatform != stdenv.hostPlatform) "perf-cross"
-}:
-
-assert !enableIntegerSimple -> gmp != null;
-
-let
-  inherit (stdenv) buildPlatform hostPlatform targetPlatform;
-
-  inherit (bootPkgs) ghc;
-
-  # TODO(@Ericson2314) Make unconditional
-  targetPrefix = stdenv.lib.optionalString
-    (targetPlatform != hostPlatform)
-    "${targetPlatform.config}-";
-
-  buildMK = ''
-    BuildFlavour = ${ghcFlavour}
-    ifneq \"\$(BuildFlavour)\" \"\"
-    include mk/flavours/\$(BuildFlavour).mk
-    endif
-    DYNAMIC_GHC_PROGRAMS = ${if enableShared then "YES" else "NO"}
-    INTEGER_LIBRARY = ${if enableIntegerSimple then "integer-simple" else "integer-gmp"}
-  '' + stdenv.lib.optionalString (targetPlatform != hostPlatform) ''
-    Stage1Only = YES
-    HADDOCK_DOCS = NO
-  '' + stdenv.lib.optionalString enableRelocatedStaticLibs ''
-    GhcLibHcOpts += -fPIC
-    GhcRtsHcOpts += -fPIC
-  '';
-
-  # Splicer will pull out correct variations
-  libDeps = platform: [ ncurses ]
-    ++ stdenv.lib.optional (!enableIntegerSimple) gmp
-    ++ stdenv.lib.optional (platform.libc != "glibc") libiconv;
-
-  toolsForTarget =
-    if hostPlatform == buildPlatform then
-      [ targetPackages.stdenv.cc ] ++ stdenv.lib.optional useLLVM llvmPackages.llvm
-    else assert targetPlatform == hostPlatform; # build != host == target
-      [ stdenv.cc ] ++ stdenv.lib.optional useLLVM buildLlvmPackages.llvm;
-
-  targetCC = builtins.head toolsForTarget;
-
-in
-stdenv.mkDerivation rec {
-  version = "8.0.2";
-  name = "${targetPrefix}ghc-${version}";
-
-  src = fetchurl {
-    url = "https://downloads.haskell.org/~ghc/${version}/ghc-${version}-src.tar.xz";
-    sha256 = "1c8qc4fhkycynk4g1f9hvk53dj6a1vvqi6bklqznns6hw59m8qhi";
-  };
-
-  enableParallelBuilding = true;
-
-  outputs = [ "out" "man" "doc" ];
-
-  patches = [
-    ./ghc-gold-linker.patch
-    (fetchpatch { # Unreleased 1.24.x commit
-      url = "https://github.com/haskell/cabal/commit/6394cb0b6eba91a8692a3d04b2b56935aed7cccd.patch";
-      sha256 = "14xxjg0nb1j1pw0riac3v385ka92qhxxblfmwyvbghz7kry6axy0";
-      stripLen = 1;
-      extraPrefix = "libraries/Cabal/";
-    })
-  ] ++ stdenv.lib.optional stdenv.isLinux ./ghc-no-madv-free.patch
-    ++ stdenv.lib.optional stdenv.isDarwin ./ghc-8.0.2-no-cpp-warnings.patch
-    ++ stdenv.lib.optional stdenv.isDarwin ./backport-dylib-command-size-limit.patch;
-
-  postPatch = "patchShebangs .";
-
-  # GHC is a bit confused on its cross terminology.
-  preConfigure = ''
-    for env in $(env | grep '^TARGET_' | sed -E 's|\+?=.*||'); do
-      export "''${env#TARGET_}=''${!env}"
-    done
-    # GHC is a bit confused on its cross terminology, as these would normally be
-    # the *host* tools.
-    export CC="${targetCC}/bin/${targetCC.targetPrefix}cc"
-    export CXX="${targetCC}/bin/${targetCC.targetPrefix}cxx"
-    export LD="${targetCC.bintools}/bin/${targetCC.bintools.targetPrefix}ld"
-    export AS="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}as"
-    export AR="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ar"
-    export NM="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}nm"
-    export RANLIB="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ranlib"
-    export READELF="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}readelf"
-    export STRIP="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}strip"
-
-    echo -n "${buildMK}" > mk/build.mk
-    sed -i -e 's|-isysroot /Developer/SDKs/MacOSX10.5.sdk||' configure
-  '' + stdenv.lib.optionalString (!stdenv.isDarwin) ''
-    export NIX_LDFLAGS+=" -rpath $out/lib/ghc-${version}"
-  '' + stdenv.lib.optionalString stdenv.isDarwin ''
-    export NIX_LDFLAGS+=" -no_dtrace_dof"
-  '';
-
-  # TODO(@Ericson2314): Always pass "--target" and always prefix.
-  configurePlatforms = [ "build" "host" ]
-    ++ stdenv.lib.optional (targetPlatform != hostPlatform) "target";
-  # `--with` flags for libraries needed for RTS linker
-  configureFlags = [
-    "--datadir=$doc/share/doc/ghc"
-    "--with-curses-includes=${ncurses.dev}/include" "--with-curses-libraries=${ncurses.out}/lib"
-  ] ++ stdenv.lib.optional (targetPlatform == hostPlatform && ! enableIntegerSimple) [
-    "--with-gmp-includes=${targetPackages.gmp.dev}/include" "--with-gmp-libraries=${targetPackages.gmp.out}/lib"
-  ] ++ stdenv.lib.optional (targetPlatform == hostPlatform && hostPlatform.libc != "glibc") [
-    "--with-iconv-includes=${libiconv}/include" "--with-iconv-libraries=${libiconv}/lib"
-  ] ++ stdenv.lib.optionals (targetPlatform != hostPlatform) [
-    "--enable-bootstrap-with-devel-snapshot"
-  ] ++ stdenv.lib.optionals (targetPlatform.isDarwin && targetPlatform.isAarch64) [
-    # fix for iOS: https://www.reddit.com/r/haskell/comments/4ttdz1/building_an_osxi386_to_iosarm64_cross_compiler/d5qvd67/
-    "--disable-large-address-space"
-  ];
-
-  # Make sure we never relax`$PATH` and hooks support for compatability.
-  strictDeps = true;
-
-  nativeBuildInputs = [
-    perl sphinx
-    ghc bootPkgs.hscolour
-  ];
-
-  # For building runtime libs
-  depsBuildTarget = toolsForTarget;
-
-  buildInputs = libDeps hostPlatform;
-
-  propagatedBuildInputs = [ targetPackages.stdenv.cc ]
-    ++ stdenv.lib.optional useLLVM llvmPackages.llvm;
-
-  depsTargetTarget = map stdenv.lib.getDev (libDeps targetPlatform);
-  depsTargetTargetPropagated = map (stdenv.lib.getOutput "out") (libDeps targetPlatform);
-
-  # required, because otherwise all symbols from HSffi.o are stripped, and
-  # that in turn causes GHCi to abort
-  stripDebugFlags = [ "-S" ] ++ stdenv.lib.optional (!targetPlatform.isDarwin) "--keep-file-symbols";
-
-  hardeningDisable = [ "format" ];
-
-  postInstall = ''
-    for bin in "$out"/lib/${name}/bin/*; do
-      isELF "$bin" || continue
-      paxmark m "$bin"
-    done
-
-    # Install the bash completion file.
-    install -D -m 444 utils/completion/ghc.bash $out/share/bash-completion/completions/${targetPrefix}ghc
-
-    # Patch scripts to include "readelf" and "cat" in $PATH.
-    for i in "$out/bin/"*; do
-      test ! -h $i || continue
-      egrep --quiet '^#!' <(head -n 1 $i) || continue
-      sed -i -e '2i export PATH="$PATH:${stdenv.lib.makeBinPath [ targetPackages.stdenv.cc.bintools coreutils ]}"' $i
-    done
-  '';
-
-  passthru = {
-    inherit bootPkgs targetPrefix;
-
-    inherit llvmPackages;
-    inherit enableShared;
-
-    # Our Cabal compiler name
-    haskellCompilerName = "ghc-8.0.2";
-  };
-
-  meta = {
-    homepage = http://haskell.org/ghc;
-    description = "The Glasgow Haskell Compiler";
-    maintainers = with stdenv.lib.maintainers; [ marcweber andres peti ];
-    inherit (ghc.meta) license platforms;
-  };
-
-}
diff --git a/pkgs/development/compilers/ghc/8.4.3.nix b/pkgs/development/compilers/ghc/8.4.3.nix
deleted file mode 100644
index e43f9a57d0a4..000000000000
--- a/pkgs/development/compilers/ghc/8.4.3.nix
+++ /dev/null
@@ -1,247 +0,0 @@
-{ stdenv, targetPackages
-
-# build-tools
-, bootPkgs
-, autoconf, automake, coreutils, fetchurl, fetchpatch, perl, python3, m4
-
-, libiconv ? null, ncurses
-
-, useLLVM ? !stdenv.targetPlatform.isx86 || (stdenv.targetPlatform.isMusl && stdenv.hostPlatform != stdenv.targetPlatform)
-, # LLVM is conceptually a run-time-only depedendency, but for
-  # non-x86, we need LLVM to bootstrap later stages, so it becomes a
-  # build-time dependency too.
-  buildLlvmPackages, llvmPackages
-
-, # If enabled, GHC will be built with the GPL-free but slower integer-simple
-  # library instead of the faster but GPLed integer-gmp library.
-  enableIntegerSimple ? !(stdenv.lib.any (stdenv.lib.meta.platformMatch stdenv.hostPlatform) gmp.meta.platforms), gmp
-
-, # If enabled, use -fPIC when compiling static libs.
-  enableRelocatedStaticLibs ? stdenv.targetPlatform != stdenv.hostPlatform
-
-, # Whether to build dynamic libs for the standard library (on the target
-  # platform). Static libs are always built.
-  enableShared ? !stdenv.targetPlatform.isWindows && !stdenv.targetPlatform.useiOSPrebuilt
-
-, # Whetherto build terminfo.
-  enableTerminfo ? !stdenv.targetPlatform.isWindows
-
-, # What flavour to build. An empty string indicates no
-  # specific flavour and falls back to ghc default values.
-  ghcFlavour ? stdenv.lib.optionalString (stdenv.targetPlatform != stdenv.hostPlatform) "perf-cross"
-, # Whether to backport https://phabricator.haskell.org/D4388 for
-  # deterministic profiling symbol names, at the cost of a slightly
-  # non-standard GHC API
-  deterministicProfiling ? false
-}:
-
-assert !enableIntegerSimple -> gmp != null;
-
-let
-  inherit (stdenv) buildPlatform hostPlatform targetPlatform;
-
-  inherit (bootPkgs) ghc;
-
-  # TODO(@Ericson2314) Make unconditional
-  targetPrefix = stdenv.lib.optionalString
-    (targetPlatform != hostPlatform)
-    "${targetPlatform.config}-";
-
-  buildMK = ''
-    BuildFlavour = ${ghcFlavour}
-    ifneq \"\$(BuildFlavour)\" \"\"
-    include mk/flavours/\$(BuildFlavour).mk
-    endif
-    DYNAMIC_GHC_PROGRAMS = ${if enableShared then "YES" else "NO"}
-    INTEGER_LIBRARY = ${if enableIntegerSimple then "integer-simple" else "integer-gmp"}
-  '' + stdenv.lib.optionalString (targetPlatform != hostPlatform) ''
-    Stage1Only = ${if targetPlatform.system == hostPlatform.system then "NO" else "YES"}
-    CrossCompilePrefix = ${targetPrefix}
-    HADDOCK_DOCS = NO
-    BUILD_SPHINX_HTML = NO
-    BUILD_SPHINX_PDF = NO
-  '' + stdenv.lib.optionalString enableRelocatedStaticLibs ''
-    GhcLibHcOpts += -fPIC
-    GhcRtsHcOpts += -fPIC
-  '' + stdenv.lib.optionalString targetPlatform.useAndroidPrebuilt ''
-    EXTRA_CC_OPTS += -std=gnu99
-  '';
-
-  # Splicer will pull out correct variations
-  libDeps = platform: stdenv.lib.optional enableTerminfo [ ncurses ]
-    ++ stdenv.lib.optional (!enableIntegerSimple) gmp
-    ++ stdenv.lib.optional (platform.libc != "glibc" && !targetPlatform.isWindows) libiconv;
-
-  toolsForTarget =
-    if hostPlatform == buildPlatform then
-      [ targetPackages.stdenv.cc ] ++ stdenv.lib.optional useLLVM llvmPackages.llvm
-    else assert targetPlatform == hostPlatform; # build != host == target
-      [ stdenv.cc ] ++ stdenv.lib.optional useLLVM buildLlvmPackages.llvm;
-
-  targetCC = builtins.head toolsForTarget;
-
-in
-stdenv.mkDerivation (rec {
-  version = "8.4.3";
-  name = "${targetPrefix}ghc-${version}";
-
-  src = fetchurl {
-    url = "https://downloads.haskell.org/~ghc/${version}/ghc-${version}-src.tar.xz";
-    sha256 = "1mk046vb561j75saz05rghhbkps46ym5aci4264dwc2qk3dayixf";
-  };
-
-  enableParallelBuilding = true;
-
-  outputs = [ "out" "doc" ];
-
-  patches = [(fetchpatch {
-    url = "https://git.haskell.org/hsc2hs.git/patch/738f3666c878ee9e79c3d5e819ef8b3460288edf";
-    sha256 = "0plzsbfaq6vb1023lsarrjglwgr9chld4q3m99rcfzx0yx5mibp3";
-    extraPrefix = "utils/hsc2hs/";
-    stripLen = 1;
-  }) (fetchpatch rec { # https://phabricator.haskell.org/D5123
-    url = "http://tarballs.nixos.org/sha256/${sha256}";
-    name = "D5123.diff";
-    sha256 = "0nhqwdamf2y4gbwqxcgjxs0kqx23w9gv5kj0zv6450dq19rji82n";
-  })] ++ stdenv.lib.optional deterministicProfiling
-    (fetchpatch rec {
-      url = "http://tarballs.nixos.org/sha256/${sha256}";
-      name = "D4388.diff";
-      sha256 = "0w6sdcvnqjlnlzpvnzw20b80v150ijjyjvs9548ildc1928j0w7s";
-    })
-    ++ stdenv.lib.optional stdenv.isDarwin ./backport-dylib-command-size-limit.patch;
-
-  postPatch = "patchShebangs .";
-
-  # GHC is a bit confused on its cross terminology.
-  preConfigure = ''
-    for env in $(env | grep '^TARGET_' | sed -E 's|\+?=.*||'); do
-      export "''${env#TARGET_}=''${!env}"
-    done
-    # GHC is a bit confused on its cross terminology, as these would normally be
-    # the *host* tools.
-    export CC="${targetCC}/bin/${targetCC.targetPrefix}cc"
-    export CXX="${targetCC}/bin/${targetCC.targetPrefix}cxx"
-    # Use gold to work around https://sourceware.org/bugzilla/show_bug.cgi?id=16177
-    export LD="${targetCC.bintools}/bin/${targetCC.bintools.targetPrefix}ld${stdenv.lib.optionalString targetPlatform.isAarch32 ".gold"}"
-    export AS="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}as"
-    export AR="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ar"
-    export NM="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}nm"
-    export RANLIB="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ranlib"
-    export READELF="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}readelf"
-    export STRIP="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}strip"
-
-    echo -n "${buildMK}" > mk/build.mk
-    sed -i -e 's|-isysroot /Developer/SDKs/MacOSX10.5.sdk||' configure
-  '' + stdenv.lib.optionalString (!stdenv.isDarwin) ''
-    export NIX_LDFLAGS+=" -rpath $out/lib/ghc-${version}"
-  '' + stdenv.lib.optionalString stdenv.isDarwin ''
-    export NIX_LDFLAGS+=" -no_dtrace_dof"
-  '' + stdenv.lib.optionalString targetPlatform.useAndroidPrebuilt ''
-    sed -i -e '5i ,("armv7a-unknown-linux-androideabi", ("e-m:e-p:32:32-i64:64-v128:64:128-a:0:32-n32-S64", "cortex-a8", ""))' llvm-targets
-  '' + stdenv.lib.optionalString targetPlatform.isMusl ''
-      echo "patching llvm-targets for musl targets..."
-      echo "Cloning these existing '*-linux-gnu*' targets:"
-      grep linux-gnu llvm-targets | sed 's/^/  /'
-      echo "(go go gadget sed)"
-      sed -i 's,\(^.*linux-\)gnu\(.*\)$,\0\n\1musl\2,' llvm-targets
-      echo "llvm-targets now contains these '*-linux-musl*' targets:"
-      grep linux-musl llvm-targets | sed 's/^/  /'
-
-      echo "And now patching to preserve '-musleabi' as done with '-gnueabi'"
-      # (aclocal.m4 is actual source, but patch configure as well since we don't re-gen)
-      for x in configure aclocal.m4; do
-        substituteInPlace $x \
-          --replace '*-android*|*-gnueabi*)' \
-                    '*-android*|*-gnueabi*|*-musleabi*)'
-      done
-  '';
-
-  # TODO(@Ericson2314): Always pass "--target" and always prefix.
-  configurePlatforms = [ "build" "host" ]
-    ++ stdenv.lib.optional (targetPlatform != hostPlatform) "target";
-  # `--with` flags for libraries needed for RTS linker
-  configureFlags = [
-    "--datadir=$doc/share/doc/ghc"
-    "--with-curses-includes=${ncurses.dev}/include" "--with-curses-libraries=${ncurses.out}/lib"
-  ] ++ stdenv.lib.optional (targetPlatform == hostPlatform && !enableIntegerSimple) [
-    "--with-gmp-includes=${targetPackages.gmp.dev}/include" "--with-gmp-libraries=${targetPackages.gmp.out}/lib"
-  ] ++ stdenv.lib.optional (targetPlatform == hostPlatform && hostPlatform.libc != "glibc" && !targetPlatform.isWindows) [
-    "--with-iconv-includes=${libiconv}/include" "--with-iconv-libraries=${libiconv}/lib"
-  ] ++ stdenv.lib.optionals (targetPlatform != hostPlatform) [
-    "--enable-bootstrap-with-devel-snapshot"
-  ] ++ stdenv.lib.optionals (targetPlatform.isAarch32) [
-    "CFLAGS=-fuse-ld=gold"
-    "CONF_GCC_LINKER_OPTS_STAGE1=-fuse-ld=gold"
-    "CONF_GCC_LINKER_OPTS_STAGE2=-fuse-ld=gold"
-  ] ++ stdenv.lib.optionals (targetPlatform.isDarwin && targetPlatform.isAarch64) [
-    # fix for iOS: https://www.reddit.com/r/haskell/comments/4ttdz1/building_an_osxi386_to_iosarm64_cross_compiler/d5qvd67/
-    "--disable-large-address-space"
-  ];
-
-  # Make sure we never relax`$PATH` and hooks support for compatability.
-  strictDeps = true;
-
-  nativeBuildInputs = [
-    perl autoconf automake m4 python3
-    ghc bootPkgs.alex bootPkgs.happy bootPkgs.hscolour
-  ];
-
-  # For building runtime libs
-  depsBuildTarget = toolsForTarget;
-
-  buildInputs = libDeps hostPlatform;
-
-  propagatedBuildInputs = [ targetPackages.stdenv.cc ]
-    ++ stdenv.lib.optional useLLVM llvmPackages.llvm;
-
-  depsTargetTarget = map stdenv.lib.getDev (libDeps targetPlatform);
-  depsTargetTargetPropagated = map (stdenv.lib.getOutput "out") (libDeps targetPlatform);
-
-  # required, because otherwise all symbols from HSffi.o are stripped, and
-  # that in turn causes GHCi to abort
-  stripDebugFlags = [ "-S" ] ++ stdenv.lib.optional (!targetPlatform.isDarwin) "--keep-file-symbols";
-
-  checkTarget = "test";
-
-  hardeningDisable = [ "format" ];
-
-  postInstall = ''
-    for bin in "$out"/lib/${name}/bin/*; do
-      isELF "$bin" || continue
-      paxmark m "$bin"
-    done
-
-    # Install the bash completion file.
-    install -D -m 444 utils/completion/ghc.bash $out/share/bash-completion/completions/${targetPrefix}ghc
-
-    # Patch scripts to include "readelf" and "cat" in $PATH.
-    for i in "$out/bin/"*; do
-      test ! -h $i || continue
-      egrep --quiet '^#!' <(head -n 1 $i) || continue
-      sed -i -e '2i export PATH="$PATH:${stdenv.lib.makeBinPath [ targetPackages.stdenv.cc.bintools coreutils ]}"' $i
-    done
-  '';
-
-  passthru = {
-    inherit bootPkgs targetPrefix;
-
-    inherit llvmPackages;
-    inherit enableShared;
-
-    # Our Cabal compiler name
-    haskellCompilerName = "ghc-8.4.3";
-  };
-
-  meta = {
-    homepage = http://haskell.org/ghc;
-    description = "The Glasgow Haskell Compiler";
-    maintainers = with stdenv.lib.maintainers; [ marcweber andres peti ];
-    inherit (ghc.meta) license platforms;
-  };
-
-} // stdenv.lib.optionalAttrs targetPlatform.useAndroidPrebuilt {
-  dontStrip = true;
-  dontPatchELF = true;
-  noAuditTmpdir = true;
-})
diff --git a/pkgs/development/compilers/ghc/ghc-8.0.2-no-cpp-warnings.patch b/pkgs/development/compilers/ghc/ghc-8.0.2-no-cpp-warnings.patch
deleted file mode 100644
index 90224df19f61..000000000000
--- a/pkgs/development/compilers/ghc/ghc-8.0.2-no-cpp-warnings.patch
+++ /dev/null
@@ -1,23 +0,0 @@
---- b/includes/rts/storage/ClosureMacros.h        2017-05-21 12:54:09.000000000 +0200
-+++ a/includes/rts/storage/ClosureMacros.h        2017-05-21 12:55:57.000000000 +0200
-@@ -499,8 +499,17 @@
-
-    -------------------------------------------------------------------------- */
-
--#define ZERO_SLOP_FOR_LDV_PROF     (defined(PROFILING))
--#define ZERO_SLOP_FOR_SANITY_CHECK (defined(DEBUG) && !defined(THREADED_RTS))
-+#if defined(PROFILING)
-+#define ZERO_SLOP_FOR_LDV_PROF 1
-+#else
-+#define ZERO_SLOP_FOR_LDV_PROF 0
-+#endif
-+
-+#if defined(DEBUG) && !defined(THREADED_RTS)
-+#define ZERO_SLOP_FOR_SANITY_CHECK 1
-+#else
-+#define ZERO_SLOP_FOR_SANITY_CHECK 0
-+#endif
-
- #if ZERO_SLOP_FOR_LDV_PROF || ZERO_SLOP_FOR_SANITY_CHECK
- #define OVERWRITING_CLOSURE(c) overwritingClosure(c)
-
diff --git a/pkgs/development/compilers/ghc/ghc-gold-linker.patch b/pkgs/development/compilers/ghc/ghc-gold-linker.patch
deleted file mode 100644
index edce7ef3a178..000000000000
--- a/pkgs/development/compilers/ghc/ghc-gold-linker.patch
+++ /dev/null
@@ -1,54 +0,0 @@
-From 46fe80ab7c0013a929d0934e61429820042a70a9 Mon Sep 17 00:00:00 2001
-From: =?UTF-8?q?Niklas=20Hamb=C3=BCchen?= <mail@nh2.me>
-Date: Fri, 21 Jul 2017 20:09:11 +0200
-Subject: [PATCH 1/2] base: Add `extra-libraries: m` because base uses libm
- functions.
-
-Linking with gold needs this because in contrast to ld, gold
-doesn't implicitly link libm.
-
-Found by Michael Bishop <cleverca22@gmail.com>.
----
- libraries/base/base.cabal | 4 ++++
- 1 file changed, 4 insertions(+)
-
-diff --git a/libraries/base/base.cabal b/libraries/base/base.cabal
-index f00fb8768e5..fd91f268ffe 100644
---- a/libraries/base/base.cabal
-+++ b/libraries/base/base.cabal
-@@ -342,6 +342,10 @@ Library
-         WCsubst.h
-         consUtils.h
- 
-+    -- Base uses libm functions. ld.bfd links libm implicitly when necessary.
-+    -- Other linkers, like gold, don't, so we have to declare it explicitly.
-+    extra-libraries: m
-+
-     -- OS Specific
-     if os(windows)
-         -- Windows requires some extra libraries for linking because the RTS
-
-From 900a8f4931e9bc6d3219d9263cfecfc6af8fc766 Mon Sep 17 00:00:00 2001
-From: michael bishop <cleverca22@gmail.com>
-Date: Sat, 22 Jul 2017 13:12:39 -0300
-Subject: [PATCH 2/2] also add -lm to ghc-prim
-
----
- libraries/ghc-prim/ghc-prim.cabal | 4 ++++
- 1 file changed, 4 insertions(+)
-
-diff --git a/libraries/ghc-prim/ghc-prim.cabal b/libraries/ghc-prim/ghc-prim.cabal
-index 00a029efedf..6db85dd69fc 100644
---- a/libraries/ghc-prim/ghc-prim.cabal
-+++ b/libraries/ghc-prim/ghc-prim.cabal
-@@ -42,6 +42,10 @@ Library
-         UnliftedFFITypes
- 
-     build-depends: rts == 1.0.*
-+    
-+    -- Base uses libm functions. ld.bfd links libm implicitly when necessary.
-+    -- Other linkers, like gold, don't, so we have to declare it explicitly.
-+    extra-libraries: m
- 
-     exposed-modules:
-         GHC.CString
diff --git a/pkgs/development/compilers/ghc/ghc-no-madv-free.patch b/pkgs/development/compilers/ghc/ghc-no-madv-free.patch
deleted file mode 100644
index 8fea9f920126..000000000000
--- a/pkgs/development/compilers/ghc/ghc-no-madv-free.patch
+++ /dev/null
@@ -1,18 +0,0 @@
-diff --git a/rts/posix/OSMem.c b/rts/posix/OSMem.c
-index 99620ee..e052a84 100644
---- a/rts/posix/OSMem.c
-+++ b/rts/posix/OSMem.c
-@@ -523,13 +523,7 @@ void osDecommitMemory(void *at, W_ size)
-         sysErrorBelch("unable to make released memory unaccessible");
- #endif
- 
--#ifdef MADV_FREE
--    // Try MADV_FREE first, FreeBSD has both and MADV_DONTNEED
--    // just swaps memory out
--    r = madvise(at, size, MADV_FREE);
--#else
-     r = madvise(at, size, MADV_DONTNEED);
--#endif
-     if(r < 0)
-         sysErrorBelch("unable to decommit memory");
- }
diff --git a/pkgs/development/compilers/ghc/relocation.patch b/pkgs/development/compilers/ghc/relocation.patch
deleted file mode 100644
index b9becfc86b54..000000000000
--- a/pkgs/development/compilers/ghc/relocation.patch
+++ /dev/null
@@ -1,27 +0,0 @@
-Adding support for the R_X86_64_REX_GOTPCRELX relocation type. 
-This relocation is treated by the linker the same as the R_X86_64_GOTPCRELX type
-G + GOT + A - P to generate relative offsets to the GOT.
-The REX prefix has no influence in this stage.
-
-This caused breakage when enabling relro/bindnow hardening e.g. in ghcPaclages.vector
-
-Source: https://phabricator.haskell.org/D2303#67070
-diff --git a/rts/Linker.c b/rts/Linker.c
---- a/rts/Linker.c
-+++ b/rts/Linker.c
-@@ -5681,7 +5681,13 @@
-           *(Elf64_Sword *)P = (Elf64_Sword)value;
- #endif
-           break;
--
-+/* These two relocations were introduced in glibc 2.23 and binutils 2.26.
-+    But in order to use them the system which compiles the bindist for GHC needs
-+    to have glibc >= 2.23. So only use them if they're defined. */
-+#if defined(R_X86_64_REX_GOTPCRELX) && defined(R_X86_64_GOTPCRELX)
-+      case R_X86_64_REX_GOTPCRELX:
-+      case R_X86_64_GOTPCRELX:
-+#endif
-       case R_X86_64_GOTPCREL:
-       {
-           StgInt64 gotAddress = (StgInt64) &makeSymbolExtra(oc, ELF_R_SYM(info), S)->addr;
-
diff --git a/pkgs/development/compilers/ghcjs/7.10/boot.patch b/pkgs/development/compilers/ghcjs/7.10/boot.patch
deleted file mode 100644
index 9f4fa3a8b7ae..000000000000
--- a/pkgs/development/compilers/ghcjs/7.10/boot.patch
+++ /dev/null
@@ -1,104 +0,0 @@
-diff --git a/src-bin/Boot.hs b/src-bin/Boot.hs
-index db8b12e..7b815c5 100644
---- a/src-bin/Boot.hs
-+++ b/src-bin/Boot.hs
-@@ -540,9 +540,7 @@ initPackageDB :: B ()
- initPackageDB = do
-   msg info "creating package databases"
-   initDB "--global" <^> beLocations . blGlobalDB
--  traverseOf_ _Just initUser <^> beLocations . blUserDBDir
-   where
--    initUser dir = rm_f (dir </> "package.conf") >> initDB "--user" (dir </> "package.conf.d")
-     initDB dbName db = do
-       rm_rf db >> mkdir_p db
-       ghcjs_pkg_ ["init", toTextI db] `catchAny_` return ()
-@@ -566,29 +564,22 @@ installDevelopmentTree = subTop $ do
-   msgD info $ "preparing development boot tree"
-   checkpoint' "ghcjs-boot-git" "ghcjs-boot repository already cloned and prepared" $ do
-     testGit "ghcjs-boot" >>= \case
--      Just False -> failWith "ghcjs-boot already exists and is not a git repository"
--      Just True  -> do
--        msg info "ghcjs-boot repository already exists but checkpoint not reached, cleaning first, then cloning"
--        rm_rf "ghcjs-boot"
-+      Just _ -> do
-+        msg info "ghcjs-boot repository already exists; initializing ghcjs-boot"
-         initGhcjsBoot
-       Nothing    -> do
-         msgD info "cloning ghcjs-boot git repository"
-         initGhcjsBoot
-   checkpoint' "shims-git" "shims repository already cloned" $ do
-     testGit "shims" >>= \case
--      Just False -> failWith "shims already exists and is not a git repository"
--      Just True  -> do
--        msgD info "shims repository already exists but checkpoint not reached, cleaning first, then cloning"
--        rm_rf "shims"
--        cloneGit shimsDescr "shims" bsrcShimsDevBranch bsrcShimsDev
-+      Just _ -> do
-+        msgD info "shims repository already exists; moving on"
-       Nothing    -> do
-         msgD info "cloning shims git repository"
-         cloneGit shimsDescr "shims" bsrcShimsDevBranch bsrcShimsDev
-   where
-     initGhcjsBoot = sub $ do
--      cloneGit bootDescr "ghcjs-boot"  bsrcBootDevBranch bsrcBootDev
-       cd "ghcjs-boot"
--      git_ ["submodule", "update", "--init", "--recursive"]
-       mapM_ patchPackage =<< allPackages
-       preparePrimops
-       buildGenPrim
-@@ -1141,7 +1132,7 @@ cabalStage1 pkgs = sub $ do
-   globalFlags <- cabalGlobalFlags
-   flags <- cabalInstallFlags (length pkgs == 1)
-   let args = globalFlags ++ ("install" : pkgs) ++
--             [ "--solver=topdown" -- the modular solver refuses to install stage1 packages
-+             [ "--allow-boot-library-installs"
-              ] ++ map ("--configure-option="<>) configureOpts ++ flags
-   checkInstallPlan pkgs args
-   cabal_ args
-@@ -1162,7 +1153,7 @@ cabalInstall pkgs = do
- -- uses somewhat fragile parsing of --dry-run output, find a better way
- checkInstallPlan :: [Package] -> [Text] -> B ()
- checkInstallPlan pkgs opts = do
--  plan <- cabal (opts ++ ["-v2", "--dry-run"])
-+  plan <- cabal (opts ++ ["-vverbose+nowrap", "--dry-run"])
-   when (hasReinstalls plan || hasUnexpectedInstalls plan || hasNewVersion plan) (err plan)
-   where
-     hasReinstalls = T.isInfixOf "(reinstall)"   -- reject reinstalls
-@@ -1201,14 +1192,14 @@ cabalInstallFlags parmakeGhcjs = do
-            , "--avoid-reinstalls"
-            , "--builddir",      "dist"
-            , "--with-compiler", ghcjs ^. pgmLocText
-+           , "--with-gcc",      "@CC@"
-            , "--with-hc-pkg",   ghcjsPkg ^. pgmLocText
--           , "--prefix",        toTextI instDir
-+           , "--prefix",        "@PREFIX@"
-+           , "--libdir",        "$prefix/lib/$compiler"
-+           , "--libsubdir",     "$pkgid"
-            , bool haddock "--enable-documentation" "--disable-documentation"
-            , "--haddock-html"
---- workaround for hoogle support being broken in haddock for GHC 7.10RC1
--#if !(__GLASGOW_HASKELL__ >= 709)
-            , "--haddock-hoogle"
--#endif
-            , "--haddock-hyperlink-source"
- -- don't slow down Windows builds too much, on other platforms we get this more
- -- or less for free, thanks to dynamic-too
-diff --git a/src/Compiler/Info.hs b/src/Compiler/Info.hs
-index 33a401f..e2405a7 100644
---- a/src/Compiler/Info.hs
-+++ b/src/Compiler/Info.hs
-@@ -48,13 +48,7 @@ compilerInfo nativeToo dflags = do
- 
- -- | the directory to use if started without -B flag
- getDefaultTopDir :: IO FilePath
--getDefaultTopDir = do
--  appdir <- getAppUserDataDirectory "ghcjs"
--  return (appdir </> subdir </> "ghcjs")
--      where
--        targetARCH = arch
--        targetOS   = os
--        subdir     = targetARCH ++ '-':targetOS ++ '-':getFullCompilerVersion
-+getDefaultTopDir = return "@PREFIX@/lib/ghcjs-@VERSION@"
- 
- getDefaultLibDir :: IO FilePath
- getDefaultLibDir = getDefaultTopDir
diff --git a/pkgs/development/compilers/ghcjs/7.10/default.nix b/pkgs/development/compilers/ghcjs/7.10/default.nix
deleted file mode 100644
index f18a094aa3cf..000000000000
--- a/pkgs/development/compilers/ghcjs/7.10/default.nix
+++ /dev/null
@@ -1,50 +0,0 @@
-{ fetchgit, fetchFromGitHub, bootPkgs, cabal-install }:
-
-bootPkgs.callPackage ../base.nix {
-  version = "0.2.0";
-
-  inherit bootPkgs cabal-install;
-
-  ghcjsSrc = fetchFromGitHub {
-    owner = "ghcjs";
-    repo = "ghcjs";
-    rev = "689c7753f50353dd05606ed79c51cd5a94d3922a";
-    sha256 = "076020a9gjv8ldj5ckm43sbzq9s6c5xj6lpd8v28ybpiama3m6b4";
-  };
-  ghcjsBootSrc = fetchgit {
-    url = git://github.com/ghcjs/ghcjs-boot.git;
-    rev = "8c549931da27ba9e607f77195208ec156c840c8a";
-    sha256 = "0yg9bnabja39qysh9pg1335qbvbc0r2mdw6cky94p7kavacndfdv";
-    fetchSubmodules = true;
-  };
-
-  shims = import ./shims.nix { inherit fetchFromGitHub; };
-  stage1Packages = [
-    "array"
-    "base"
-    "binary"
-    "bytestring"
-    "containers"
-    "deepseq"
-    "directory"
-    "filepath"
-    "ghc-boot"
-    "ghc-boot-th"
-    "ghc-prim"
-    "ghci"
-    "ghcjs-prim"
-    "ghcjs-th"
-    "integer-gmp"
-    "pretty"
-    "primitive"
-    "process"
-    "rts"
-    "template-haskell"
-    "time"
-    "transformers"
-    "unix"
-  ];
-  stage2 = import ./stage2.nix;
-
-  patches = [ ./boot.patch ];
-}
diff --git a/pkgs/development/compilers/ghcjs/7.10/shims.nix b/pkgs/development/compilers/ghcjs/7.10/shims.nix
deleted file mode 100644
index fa706699449a..000000000000
--- a/pkgs/development/compilers/ghcjs/7.10/shims.nix
+++ /dev/null
@@ -1,7 +0,0 @@
-{ fetchFromGitHub }:
-fetchFromGitHub {
-  owner = "ghcjs";
-  repo = "shims";
-  rev = "b97015229c58eeab7c1d0bb575794b14a9f6efca";
-  sha256 = "1p5adkqvmb1gsv9hnn3if0rdpnaq3v9a1zkfdy282yw05jaaaggz";
-}
diff --git a/pkgs/development/compilers/ghcjs/7.10/stage2.nix b/pkgs/development/compilers/ghcjs/7.10/stage2.nix
deleted file mode 100644
index 3483afc99ef0..000000000000
--- a/pkgs/development/compilers/ghcjs/7.10/stage2.nix
+++ /dev/null
@@ -1,344 +0,0 @@
-{ ghcjsBoot }: { callPackage }:
-
-{
-  async = callPackage
-    ({ mkDerivation, base, HUnit, stdenv, stm, test-framework
-      , test-framework-hunit
-      }:
-      mkDerivation {
-        pname = "async";
-        version = "2.0.1.6";
-        src = "${ghcjsBoot}/boot/async";
-        doCheck = false;
-        libraryHaskellDepends = [ base stm ];
-        testHaskellDepends = [
-          base HUnit test-framework test-framework-hunit
-        ];
-        jailbreak = true;
-        homepage = https://github.com/simonmar/async;
-        description = "Run IO operations asynchronously and wait for their results";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  aeson = callPackage
-    ({ mkDerivation, attoparsec, base, bytestring, containers, deepseq
-      , dlist, ghc-prim, hashable, HUnit, mtl, QuickCheck, scientific
-      , stdenv, syb, template-haskell, test-framework
-      , test-framework-hunit, test-framework-quickcheck2, text, time
-      , transformers, unordered-containers, vector
-      }:
-      mkDerivation {
-        pname = "aeson";
-        version = "0.9.0.1";
-        src = "${ghcjsBoot}/boot/aeson";
-        doCheck = false;
-        libraryHaskellDepends = [
-          attoparsec base bytestring containers deepseq dlist ghc-prim
-          hashable mtl scientific syb template-haskell text time transformers
-          unordered-containers vector
-        ];
-        testHaskellDepends = [
-          attoparsec base bytestring containers ghc-prim HUnit QuickCheck
-          template-haskell test-framework test-framework-hunit
-          test-framework-quickcheck2 text time unordered-containers vector
-        ];
-        jailbreak = true;
-        homepage = https://github.com/bos/aeson;
-        description = "Fast JSON parsing and encoding";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  attoparsec = callPackage
-    ({ mkDerivation, array, base, bytestring, containers, deepseq
-      , QuickCheck, quickcheck-unicode, scientific, stdenv
-      , test-framework, test-framework-quickcheck2, text, transformers
-      , vector
-      }:
-      mkDerivation {
-        pname = "attoparsec";
-        version = "0.13.0.1";
-        src = "${ghcjsBoot}/boot/attoparsec";
-        doCheck = false;
-        libraryHaskellDepends = [
-          array base bytestring containers deepseq scientific text
-          transformers
-        ];
-        testHaskellDepends = [
-          array base bytestring containers deepseq QuickCheck
-          quickcheck-unicode scientific test-framework
-          test-framework-quickcheck2 text transformers vector
-        ];
-        jailbreak = true;
-        homepage = https://github.com/bos/attoparsec;
-        description = "Fast combinator parsing for bytestrings and text";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  case-insensitive = callPackage
-    ({ mkDerivation, base, bytestring, deepseq, hashable, HUnit, stdenv
-      , test-framework, test-framework-hunit, text
-      }:
-      mkDerivation {
-        pname = "case-insensitive";
-        version = "1.2.0.4";
-        src = "${ghcjsBoot}/boot/case-insensitive";
-        doCheck = false;
-        libraryHaskellDepends = [ base bytestring deepseq hashable text ];
-        testHaskellDepends = [
-          base bytestring HUnit test-framework test-framework-hunit text
-        ];
-        jailbreak = true;
-        homepage = https://github.com/basvandijk/case-insensitive;
-        description = "Case insensitive string comparison";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  dlist = callPackage
-    ({ mkDerivation, base, Cabal, deepseq, QuickCheck, stdenv }:
-      mkDerivation {
-        pname = "dlist";
-        version = "0.7.1.1";
-        src = "${ghcjsBoot}/boot/dlist";
-        doCheck = false;
-        libraryHaskellDepends = [ base deepseq ];
-        testHaskellDepends = [ base Cabal QuickCheck ];
-        jailbreak = true;
-        homepage = https://github.com/spl/dlist;
-        description = "Difference lists";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  extensible-exceptions = callPackage
-    ({ mkDerivation, base, stdenv }:
-      mkDerivation {
-        pname = "extensible-exceptions";
-        version = "0.1.1.4";
-        src = "${ghcjsBoot}/boot/extensible-exceptions";
-        doCheck = false;
-        libraryHaskellDepends = [ base ];
-        jailbreak = true;
-        description = "Extensible exceptions";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  hashable = callPackage
-    ({ mkDerivation, base, bytestring, ghc-prim, HUnit, integer-gmp
-      , QuickCheck, random, stdenv, test-framework, test-framework-hunit
-      , test-framework-quickcheck2, text, unix
-      }:
-      mkDerivation {
-        pname = "hashable";
-        version = "1.2.3.2";
-        src = "${ghcjsBoot}/boot/hashable";
-        doCheck = false;
-        libraryHaskellDepends = [
-          base bytestring ghc-prim integer-gmp text
-        ];
-        testHaskellDepends = [
-          base bytestring ghc-prim HUnit QuickCheck random test-framework
-          test-framework-hunit test-framework-quickcheck2 text unix
-        ];
-        jailbreak = true;
-        homepage = https://github.com/tibbe/hashable;
-        description = "A class for types that can be converted to a hash value";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  mtl = callPackage
-    ({ mkDerivation, base, stdenv, transformers }:
-      mkDerivation {
-        pname = "mtl";
-        version = "2.2.1";
-        src = "${ghcjsBoot}/boot/mtl";
-        doCheck = false;
-        libraryHaskellDepends = [ base transformers ];
-        jailbreak = true;
-        homepage = https://github.com/ekmett/mtl;
-        description = "Monad classes, using functional dependencies";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  old-time = callPackage
-    ({ mkDerivation, base, old-locale, stdenv }:
-      mkDerivation {
-        pname = "old-time";
-        version = "1.1.0.3";
-        src = "${ghcjsBoot}/boot/old-time";
-        doCheck = false;
-        libraryHaskellDepends = [ base old-locale ];
-        jailbreak = true;
-        description = "Time library";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  parallel = callPackage
-    ({ mkDerivation, array, base, containers, deepseq, stdenv }:
-      mkDerivation {
-        pname = "parallel";
-        version = "3.2.0.6";
-        src = "${ghcjsBoot}/boot/parallel";
-        doCheck = false;
-        libraryHaskellDepends = [ array base containers deepseq ];
-        jailbreak = true;
-        description = "Parallel programming library";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  scientific = callPackage
-    ({ mkDerivation, array, base, bytestring, deepseq, ghc-prim
-      , hashable, integer-gmp, QuickCheck, smallcheck, stdenv, tasty
-      , tasty-ant-xml, tasty-hunit, tasty-quickcheck, tasty-smallcheck
-      , text
-      }:
-      mkDerivation {
-        pname = "scientific";
-        version = "0.3.3.8";
-        src = "${ghcjsBoot}/boot/scientific";
-        doCheck = false;
-        libraryHaskellDepends = [
-          array base bytestring deepseq ghc-prim hashable integer-gmp text
-        ];
-        testHaskellDepends = [
-          base bytestring QuickCheck smallcheck tasty tasty-ant-xml
-          tasty-hunit tasty-quickcheck tasty-smallcheck text
-        ];
-        jailbreak = true;
-        homepage = https://github.com/basvandijk/scientific;
-        description = "Numbers represented using scientific notation";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  stm = callPackage
-    ({ mkDerivation, array, base, stdenv }:
-      mkDerivation {
-        pname = "stm";
-        version = "2.4.4";
-        src = "${ghcjsBoot}/boot/stm";
-        doCheck = false;
-        libraryHaskellDepends = [ array base ];
-        jailbreak = true;
-        description = "Software Transactional Memory";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  syb = callPackage
-    ({ mkDerivation, base, containers, HUnit, mtl, stdenv }:
-      mkDerivation {
-        pname = "syb";
-        version = "0.5.1";
-        src = "${ghcjsBoot}/boot/syb";
-        doCheck = false;
-        libraryHaskellDepends = [ base ];
-        testHaskellDepends = [ base containers HUnit mtl ];
-        jailbreak = true;
-        homepage = http://www.cs.uu.nl/wiki/GenericProgramming/SYB;
-        description = "Scrap Your Boilerplate";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  text = callPackage
-    ({ mkDerivation, array, base, binary, bytestring, deepseq, directory
-      , ghc-prim, HUnit, integer-gmp, QuickCheck, quickcheck-unicode
-      , random, stdenv, test-framework, test-framework-hunit
-      , test-framework-quickcheck2
-      }:
-      mkDerivation {
-        pname = "text";
-        version = "1.2.1.1";
-        src = "${ghcjsBoot}/boot/text";
-        doCheck = false;
-        libraryHaskellDepends = [
-          array base binary bytestring deepseq ghc-prim integer-gmp
-        ];
-        testHaskellDepends = [
-          array base binary bytestring deepseq directory ghc-prim HUnit
-          integer-gmp QuickCheck quickcheck-unicode random test-framework
-          test-framework-hunit test-framework-quickcheck2
-        ];
-        jailbreak = true;
-        homepage = https://github.com/bos/text;
-        description = "An efficient packed Unicode text type";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  unordered-containers = callPackage
-    ({ mkDerivation, base, ChasingBottoms, containers, deepseq, hashable
-      , HUnit, QuickCheck, stdenv, test-framework, test-framework-hunit
-      , test-framework-quickcheck2
-      }:
-      mkDerivation {
-        pname = "unordered-containers";
-        version = "0.2.5.1";
-        src = "${ghcjsBoot}/boot/unordered-containers";
-        doCheck = false;
-        libraryHaskellDepends = [ base deepseq hashable ];
-        testHaskellDepends = [
-          base ChasingBottoms containers hashable HUnit QuickCheck
-          test-framework test-framework-hunit test-framework-quickcheck2
-        ];
-        jailbreak = true;
-        homepage = https://github.com/tibbe/unordered-containers;
-        description = "Efficient hashing-based container types";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  vector = callPackage
-    ({ mkDerivation, base, deepseq, ghc-prim, primitive, QuickCheck
-      , random, stdenv, template-haskell, test-framework
-      , test-framework-quickcheck2, transformers
-      }:
-      mkDerivation {
-        pname = "vector";
-        version = "0.11.0.0";
-        src = "${ghcjsBoot}/boot/vector";
-        doCheck = false;
-        libraryHaskellDepends = [ base deepseq ghc-prim primitive ];
-        testHaskellDepends = [
-          base QuickCheck random template-haskell test-framework
-          test-framework-quickcheck2 transformers
-        ];
-        jailbreak = true;
-        homepage = https://github.com/haskell/vector;
-        description = "Efficient Arrays";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  ghcjs-base = callPackage
-    ({ mkDerivation, aeson, array, attoparsec, base, bytestring
-      , containers, deepseq, directory, dlist, ghc-prim, ghcjs-prim
-      , hashable, HUnit, integer-gmp, primitive, QuickCheck
-      , quickcheck-unicode, random, scientific, stdenv, test-framework
-      , test-framework-hunit, test-framework-quickcheck2, text, time
-      , transformers, unordered-containers, vector
-      }:
-      mkDerivation {
-        pname = "ghcjs-base";
-        version = "0.2.0.0";
-        src = "${ghcjsBoot}/ghcjs/ghcjs-base";
-        doCheck = false;
-        libraryHaskellDepends = [
-          aeson attoparsec base bytestring containers deepseq dlist ghc-prim
-          ghcjs-prim hashable integer-gmp primitive scientific text time
-          transformers unordered-containers vector
-        ];
-        testHaskellDepends = [
-          array base bytestring deepseq directory ghc-prim ghcjs-prim HUnit
-          primitive QuickCheck quickcheck-unicode random test-framework
-          test-framework-hunit test-framework-quickcheck2 text
-        ];
-        jailbreak = true;
-        homepage = https://github.com/ghcjs/ghcjs-base;
-        description = "Base library for GHCJS";
-        license = stdenv.lib.licenses.mit;
-      }) {};
-  Cabal = callPackage
-    ({ mkDerivation, array, base, binary, bytestring, containers
-      , deepseq, directory, extensible-exceptions, filepath, HUnit
-      , old-time, pretty, process, QuickCheck, regex-posix, stdenv
-      , test-framework, test-framework-hunit, test-framework-quickcheck2
-      , time, unix
-      }:
-      mkDerivation {
-        pname = "Cabal";
-        version = "1.22.8.0";
-        src = "${ghcjsBoot}/boot/cabal/Cabal";
-        doCheck = false;
-        libraryHaskellDepends = [
-          array base binary bytestring containers deepseq directory filepath
-          pretty process time unix
-        ];
-        testHaskellDepends = [
-          base bytestring containers directory extensible-exceptions filepath
-          HUnit old-time process QuickCheck regex-posix test-framework
-          test-framework-hunit test-framework-quickcheck2 unix
-        ];
-        jailbreak = true;
-        homepage = http://www.haskell.org/cabal/;
-        description = "A framework for packaging Haskell software";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-}
diff --git a/pkgs/development/compilers/ghcjs/8.0/boot.patch b/pkgs/development/compilers/ghcjs/8.0/boot.patch
deleted file mode 100644
index bbb5b30468cb..000000000000
--- a/pkgs/development/compilers/ghcjs/8.0/boot.patch
+++ /dev/null
@@ -1,86 +0,0 @@
-diff --git a/src-bin/Boot.hs b/src-bin/Boot.hs
-index db8b12e..7b815c5 100644
---- a/src-bin/Boot.hs
-+++ b/src-bin/Boot.hs
-@@ -540,9 +540,7 @@ initPackageDB :: B ()
- initPackageDB = do
-   msg info "creating package databases"
-   initDB "--global" <^> beLocations . blGlobalDB
--  traverseOf_ _Just initUser <^> beLocations . blUserDBDir
-   where
--    initUser dir = rm_f (dir </> "package.conf") >> initDB "--user" (dir </> "package.conf.d")
-     initDB dbName db = do
-       rm_rf db >> mkdir_p db
-       ghcjs_pkg_ ["init", toTextI db] `catchAny_` return ()
-@@ -566,29 +564,22 @@ installDevelopmentTree = subTop $ do
-   msgD info $ "preparing development boot tree"
-   checkpoint' "ghcjs-boot-git" "ghcjs-boot repository already cloned and prepared" $ do
-     testGit "ghcjs-boot" >>= \case
--      Just False -> failWith "ghcjs-boot already exists and is not a git repository"
--      Just True  -> do
--        msg info "ghcjs-boot repository already exists but checkpoint not reached, cleaning first, then cloning"
--        rm_rf "ghcjs-boot"
-+      Just _ -> do
-+        msg info "ghcjs-boot repository already exists; initializing ghcjs-boot"
-         initGhcjsBoot
-       Nothing    -> do
-         msgD info "cloning ghcjs-boot git repository"
-         initGhcjsBoot
-   checkpoint' "shims-git" "shims repository already cloned" $ do
-     testGit "shims" >>= \case
--      Just False -> failWith "shims already exists and is not a git repository"
--      Just True  -> do
--        msgD info "shims repository already exists but checkpoint not reached, cleaning first, then cloning"
--        rm_rf "shims"
--        cloneGit shimsDescr "shims" bsrcShimsDevBranch bsrcShimsDev
-+      Just _ -> do
-+        msgD info "shims repository already exists; moving on"
-       Nothing    -> do
-         msgD info "cloning shims git repository"
-         cloneGit shimsDescr "shims" bsrcShimsDevBranch bsrcShimsDev
-   where
-     initGhcjsBoot = sub $ do
--      cloneGit bootDescr "ghcjs-boot"  bsrcBootDevBranch bsrcBootDev
-       cd "ghcjs-boot"
--      git_ ["submodule", "update", "--init", "--recursive"]
-       mapM_ patchPackage =<< allPackages
-       preparePrimops
-       buildGenPrim
-@@ -1201,14 +1192,14 @@ cabalInstallFlags parmakeGhcjs = do
-            , "--avoid-reinstalls"
-            , "--builddir",      "dist"
-            , "--with-compiler", ghcjs ^. pgmLocText
-+           , "--with-gcc",      "@CC@"
-            , "--with-hc-pkg",   ghcjsPkg ^. pgmLocText
--           , "--prefix",        toTextI instDir
-+           , "--prefix",        "@PREFIX@"
-+           , "--libdir",        "$prefix/lib/$compiler"
-+           , "--libsubdir",     "$pkgid"
-            , bool haddock "--enable-documentation" "--disable-documentation"
-            , "--haddock-html"
---- workaround for hoogle support being broken in haddock for GHC 7.10RC1
--#if !(__GLASGOW_HASKELL__ >= 709)
-            , "--haddock-hoogle"
--#endif
-            , "--haddock-hyperlink-source"
- -- don't slow down Windows builds too much, on other platforms we get this more
- -- or less for free, thanks to dynamic-too
-diff --git a/src/Compiler/Info.hs b/src/Compiler/Info.hs
-index 33a401f..e2405a7 100644
---- a/src/Compiler/Info.hs
-+++ b/src/Compiler/Info.hs
-@@ -48,13 +48,7 @@ compilerInfo nativeToo dflags = do
- 
- -- | the directory to use if started without -B flag
- getDefaultTopDir :: IO FilePath
--getDefaultTopDir = do
--  appdir <- getAppUserDataDirectory "ghcjs"
--  return (appdir </> subdir </> "ghcjs")
--      where
--        targetARCH = arch
--        targetOS   = os
--        subdir     = targetARCH ++ '-':targetOS ++ '-':getFullCompilerVersion
-+getDefaultTopDir = return "@PREFIX@/lib/ghcjs-@VERSION@"
- 
- getDefaultLibDir :: IO FilePath
- getDefaultLibDir = getDefaultTopDir
diff --git a/pkgs/development/compilers/ghcjs/8.0/default.nix b/pkgs/development/compilers/ghcjs/8.0/default.nix
deleted file mode 100644
index a786f536eb9b..000000000000
--- a/pkgs/development/compilers/ghcjs/8.0/default.nix
+++ /dev/null
@@ -1,50 +0,0 @@
-{ fetchgit, fetchFromGitHub, bootPkgs, cabal-install }:
-
-bootPkgs.callPackage ../base.nix {
-  version = "0.2.020170323";
-
-  inherit bootPkgs cabal-install;
-
-  ghcjsSrc = fetchFromGitHub {
-    owner = "ghcjs";
-    repo = "ghcjs";
-    rev = "2b3759942fb5b2fc1a58d314d9b098d4622fa6b6";
-    sha256 = "15asapg0va8dvcdycsx8dgk4xcpdnhml4h31wka6vvxf5anzz8aw";
-  };
-  ghcjsBootSrc = fetchgit {
-    url = git://github.com/ghcjs/ghcjs-boot.git;
-    rev = "106e144cca6529a1b9612c11aea5d6ef65b96745";
-    sha256 = "0gxg8iiwvm93x1dwhxypczn9qiz4m1xvj8i7cf4snfdy2jdyhi5l";
-    fetchSubmodules = true;
-  };
-
-  shims = import ./shims.nix { inherit fetchFromGitHub; };
-  stage1Packages = [
-    "array"
-    "base"
-    "binary"
-    "bytestring"
-    "containers"
-    "deepseq"
-    "directory"
-    "filepath"
-    "ghc-boot"
-    "ghc-boot-th"
-    "ghc-prim"
-    "ghci"
-    "ghcjs-prim"
-    "ghcjs-th"
-    "integer-gmp"
-    "pretty"
-    "primitive"
-    "process"
-    "rts"
-    "template-haskell"
-    "time"
-    "transformers"
-    "unix"
-  ];
-  stage2 = import ./stage2.nix;
-
-  patches = [ ./boot.patch ];
-}
diff --git a/pkgs/development/compilers/ghcjs/8.0/shims.nix b/pkgs/development/compilers/ghcjs/8.0/shims.nix
deleted file mode 100644
index a9a7f8d45e27..000000000000
--- a/pkgs/development/compilers/ghcjs/8.0/shims.nix
+++ /dev/null
@@ -1,7 +0,0 @@
-{ fetchFromGitHub }:
-fetchFromGitHub {
-  owner = "ghcjs";
-  repo = "shims";
-  rev = "85395dce971e23a39e5f93af4ed139ca36d4e448";
-  sha256 = "1kqgik75jx681s1kjx1s7dryigr3m940c3zb9vy0r3psxrw6sf2g";
-}
diff --git a/pkgs/development/compilers/ghcjs/8.0/stage2.nix b/pkgs/development/compilers/ghcjs/8.0/stage2.nix
deleted file mode 100644
index 18c7a76dd3af..000000000000
--- a/pkgs/development/compilers/ghcjs/8.0/stage2.nix
+++ /dev/null
@@ -1,545 +0,0 @@
-{ ghcjsBoot }: { callPackage }:
-
-{
-  async = callPackage
-    ({ mkDerivation, base, HUnit, stdenv, stm, test-framework
-      , test-framework-hunit
-      }:
-      mkDerivation {
-        pname = "async";
-        version = "2.1.1";
-        src = "${ghcjsBoot}/boot/async";
-        doCheck = false;
-        libraryHaskellDepends = [ base stm ];
-        testHaskellDepends = [
-          base HUnit test-framework test-framework-hunit
-        ];
-        jailbreak = true;
-        homepage = "https://github.com/simonmar/async";
-        description = "Run IO operations asynchronously and wait for their results";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  aeson = callPackage
-    ({ mkDerivation, attoparsec, base, base-compat, base-orphans
-      , base16-bytestring, bytestring, containers, deepseq, directory
-      , dlist, filepath, generic-deriving, ghc-prim, hashable
-      , hashable-time, HUnit, integer-logarithms, QuickCheck
-      , quickcheck-instances, scientific, stdenv, tagged
-      , template-haskell, test-framework, test-framework-hunit
-      , test-framework-quickcheck2, text, th-abstraction, time
-      , time-locale-compat, unordered-containers, uuid-types, vector
-      }:
-      mkDerivation {
-        pname = "aeson";
-        version = "1.2.2.0";
-        src = "${ghcjsBoot}/boot/aeson";
-        doCheck = false;
-        libraryHaskellDepends = [
-          attoparsec base base-compat bytestring containers deepseq dlist
-          ghc-prim hashable scientific tagged template-haskell text
-          th-abstraction time time-locale-compat unordered-containers
-          uuid-types vector
-        ];
-        testHaskellDepends = [
-          attoparsec base base-compat base-orphans base16-bytestring
-          bytestring containers directory dlist filepath generic-deriving
-          ghc-prim hashable hashable-time HUnit integer-logarithms QuickCheck
-          quickcheck-instances scientific tagged template-haskell
-          test-framework test-framework-hunit test-framework-quickcheck2 text
-          time time-locale-compat unordered-containers uuid-types vector
-        ];
-        jailbreak = true;
-        homepage = "https://github.com/bos/aeson";
-        description = "Fast JSON parsing and encoding";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  attoparsec = callPackage
-    ({ mkDerivation, array, base, bytestring, case-insensitive
-      , containers, criterion, deepseq, directory, filepath, ghc-prim
-      , http-types, parsec, QuickCheck, quickcheck-unicode, scientific
-      , stdenv, tasty, tasty-quickcheck, text, transformers
-      , unordered-containers, vector
-      }:
-      mkDerivation {
-        pname = "attoparsec";
-        version = "0.13.1.0";
-        src = "${ghcjsBoot}/boot/attoparsec";
-        doCheck = false;
-        libraryHaskellDepends = [
-          array base bytestring containers deepseq scientific text
-          transformers
-        ];
-        testHaskellDepends = [
-          array base bytestring deepseq QuickCheck quickcheck-unicode
-          scientific tasty tasty-quickcheck text transformers vector
-        ];
-        benchmarkHaskellDepends = [
-          array base bytestring case-insensitive containers criterion deepseq
-          directory filepath ghc-prim http-types parsec scientific text
-          transformers unordered-containers vector
-        ];
-        jailbreak = true;
-        homepage = "https://github.com/bos/attoparsec";
-        description = "Fast combinator parsing for bytestrings and text";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  base-compat = callPackage
-    ({ mkDerivation, base, hspec, QuickCheck, stdenv, unix }:
-      mkDerivation {
-        pname = "base-compat";
-        version = "0.9.3";
-        src = "${ghcjsBoot}/boot/base-compat";
-        doCheck = false;
-        libraryHaskellDepends = [ base unix ];
-        testHaskellDepends = [ base hspec QuickCheck ];
-        jailbreak = true;
-        description = "A compatibility layer for base";
-        license = stdenv.lib.licenses.mit;
-      }) {};
-  bytestring-builder = callPackage
-    ({ mkDerivation, base, bytestring, deepseq, stdenv }:
-      mkDerivation {
-        pname = "bytestring-builder";
-        version = "0.10.8.1.0";
-        src = "${ghcjsBoot}/boot/bytestring-builder";
-        doCheck = false;
-        libraryHaskellDepends = [ base bytestring deepseq ];
-        jailbreak = true;
-        description = "The new bytestring builder, packaged outside of GHC";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  case-insensitive = callPackage
-    ({ mkDerivation, base, bytestring, criterion, deepseq, hashable
-      , HUnit, stdenv, test-framework, test-framework-hunit, text
-      }:
-      mkDerivation {
-        pname = "case-insensitive";
-        version = "1.2.0.8";
-        src = "${ghcjsBoot}/boot/case-insensitive";
-        doCheck = false;
-        libraryHaskellDepends = [ base bytestring deepseq hashable text ];
-        testHaskellDepends = [
-          base bytestring HUnit test-framework test-framework-hunit text
-        ];
-        benchmarkHaskellDepends = [ base bytestring criterion deepseq ];
-        jailbreak = true;
-        homepage = "https://github.com/basvandijk/case-insensitive";
-        description = "Case insensitive string comparison";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  dlist = callPackage
-    ({ mkDerivation, base, Cabal, deepseq, QuickCheck, stdenv }:
-      mkDerivation {
-        pname = "dlist";
-        version = "0.8.0.2";
-        src = "${ghcjsBoot}/boot/dlist";
-        doCheck = false;
-        libraryHaskellDepends = [ base deepseq ];
-        testHaskellDepends = [ base Cabal QuickCheck ];
-        jailbreak = true;
-        homepage = "https://github.com/spl/dlist";
-        description = "Difference lists";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  extensible-exceptions = callPackage
-    ({ mkDerivation, base, stdenv }:
-      mkDerivation {
-        pname = "extensible-exceptions";
-        version = "0.1.1.4";
-        src = "${ghcjsBoot}/boot/extensible-exceptions";
-        doCheck = false;
-        libraryHaskellDepends = [ base ];
-        jailbreak = true;
-        description = "Extensible exceptions";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  fail = callPackage
-    ({ mkDerivation, stdenv }:
-      mkDerivation {
-        pname = "fail";
-        version = "4.9.0.0";
-        src = "${ghcjsBoot}/boot/fail";
-        jailbreak = true;
-        homepage = "https://prime.haskell.org/wiki/Libraries/Proposals/MonadFail";
-        description = "Forward-compatible MonadFail class";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  hashable = callPackage
-    ({ mkDerivation, base, bytestring, criterion, ghc-prim, HUnit
-      , integer-gmp, QuickCheck, random, siphash, stdenv, test-framework
-      , test-framework-hunit, test-framework-quickcheck2, text, unix
-      }:
-      mkDerivation {
-        pname = "hashable";
-        version = "1.2.4.0";
-        src = "${ghcjsBoot}/boot/hashable";
-        doCheck = false;
-        libraryHaskellDepends = [
-          base bytestring ghc-prim integer-gmp text
-        ];
-        testHaskellDepends = [
-          base bytestring ghc-prim HUnit QuickCheck random test-framework
-          test-framework-hunit test-framework-quickcheck2 text unix
-        ];
-        benchmarkHaskellDepends = [
-          base bytestring criterion ghc-prim integer-gmp siphash text
-        ];
-        jailbreak = true;
-        homepage = "http://github.com/tibbe/hashable";
-        description = "A class for types that can be converted to a hash value";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  integer-logarithms = callPackage
-    ({ mkDerivation, array, base, ghc-prim, integer-gmp, QuickCheck
-      , smallcheck, stdenv, tasty, tasty-hunit, tasty-quickcheck
-      , tasty-smallcheck
-      }:
-      mkDerivation {
-        pname = "integer-logarithms";
-        version = "1.0.2";
-        src = "${ghcjsBoot}/boot/integer-logarithms";
-        doCheck = false;
-        libraryHaskellDepends = [ array base ghc-prim integer-gmp ];
-        testHaskellDepends = [
-          base QuickCheck smallcheck tasty tasty-hunit tasty-quickcheck
-          tasty-smallcheck
-        ];
-        jailbreak = true;
-        homepage = "https://github.com/phadej/integer-logarithms";
-        description = "Integer logarithms";
-        license = stdenv.lib.licenses.mit;
-      }) {};
-  mtl = callPackage
-    ({ mkDerivation, base, stdenv, transformers }:
-      mkDerivation {
-        pname = "mtl";
-        version = "2.2.1";
-        src = "${ghcjsBoot}/boot/mtl";
-        doCheck = false;
-        libraryHaskellDepends = [ base transformers ];
-        jailbreak = true;
-        homepage = "http://github.com/ekmett/mtl";
-        description = "Monad classes, using functional dependencies";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  nats = callPackage
-    ({ mkDerivation, stdenv }:
-      mkDerivation {
-        pname = "nats";
-        version = "1.1.1";
-        src = "${ghcjsBoot}/boot/nats";
-        jailbreak = true;
-        homepage = "http://github.com/ekmett/nats/";
-        description = "Natural numbers";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  old-time = callPackage
-    ({ mkDerivation, base, old-locale, stdenv }:
-      mkDerivation {
-        pname = "old-time";
-        version = "1.1.0.3";
-        src = "${ghcjsBoot}/boot/old-time";
-        doCheck = false;
-        libraryHaskellDepends = [ base old-locale ];
-        jailbreak = true;
-        description = "Time library";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  parallel = callPackage
-    ({ mkDerivation, array, base, containers, deepseq, stdenv }:
-      mkDerivation {
-        pname = "parallel";
-        version = "3.2.1.0";
-        src = "${ghcjsBoot}/boot/parallel";
-        doCheck = false;
-        libraryHaskellDepends = [ array base containers deepseq ];
-        jailbreak = true;
-        description = "Parallel programming library";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  random = callPackage
-    ({ mkDerivation, base, stdenv, time }:
-      mkDerivation {
-        pname = "random";
-        version = "1.1";
-        src = "${ghcjsBoot}/boot/random";
-        doCheck = false;
-        libraryHaskellDepends = [ base time ];
-        testHaskellDepends = [ base ];
-        jailbreak = true;
-        description = "random number library";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  scientific = callPackage
-    ({ mkDerivation, base, binary, bytestring, containers, criterion
-      , deepseq, ghc-prim, hashable, integer-gmp, integer-logarithms
-      , QuickCheck, smallcheck, stdenv, tasty, tasty-ant-xml, tasty-hunit
-      , tasty-quickcheck, tasty-smallcheck, text, vector
-      }:
-      mkDerivation {
-        pname = "scientific";
-        version = "0.3.4.10";
-        src = "${ghcjsBoot}/boot/scientific";
-        doCheck = false;
-        libraryHaskellDepends = [
-          base binary bytestring containers deepseq ghc-prim hashable
-          integer-gmp integer-logarithms text vector
-        ];
-        testHaskellDepends = [
-          base binary bytestring QuickCheck smallcheck tasty tasty-ant-xml
-          tasty-hunit tasty-quickcheck tasty-smallcheck text
-        ];
-        benchmarkHaskellDepends = [ base criterion ];
-        jailbreak = true;
-        homepage = "https://github.com/basvandijk/scientific";
-        description = "Numbers represented using scientific notation";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  semigroups = callPackage
-    ({ mkDerivation, base, stdenv }:
-      mkDerivation {
-        pname = "semigroups";
-        version = "0.18.3";
-        src = "${ghcjsBoot}/boot/semigroups";
-        doCheck = false;
-        libraryHaskellDepends = [ base ];
-        jailbreak = true;
-        homepage = "http://github.com/ekmett/semigroups/";
-        description = "Anything that associates";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  stm = callPackage
-    ({ mkDerivation, array, base, stdenv }:
-      mkDerivation {
-        pname = "stm";
-        version = "2.4.4.1";
-        src = "${ghcjsBoot}/boot/stm";
-        doCheck = false;
-        libraryHaskellDepends = [ array base ];
-        jailbreak = true;
-        description = "Software Transactional Memory";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  syb = callPackage
-    ({ mkDerivation, base, containers, HUnit, mtl, stdenv }:
-      mkDerivation {
-        pname = "syb";
-        version = "0.6";
-        src = "${ghcjsBoot}/boot/syb";
-        doCheck = false;
-        libraryHaskellDepends = [ base ];
-        testHaskellDepends = [ base containers HUnit mtl ];
-        jailbreak = true;
-        homepage = "http://www.cs.uu.nl/wiki/GenericProgramming/SYB";
-        description = "Scrap Your Boilerplate";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  tagged = callPackage
-    ({ mkDerivation, base, deepseq, stdenv, template-haskell
-      , transformers, transformers-compat
-      }:
-      mkDerivation {
-        pname = "tagged";
-        version = "0.8.5";
-        src = "${ghcjsBoot}/boot/tagged";
-        doCheck = false;
-        libraryHaskellDepends = [
-          base deepseq template-haskell transformers transformers-compat
-        ];
-        jailbreak = true;
-        homepage = "http://github.com/ekmett/tagged";
-        description = "Haskell 98 phantom types to avoid unsafely passing dummy arguments";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  text = callPackage
-    ({ mkDerivation, array, base, binary, bytestring, deepseq, directory
-      , ghc-prim, HUnit, integer-gmp, QuickCheck, quickcheck-unicode
-      , random, stdenv, test-framework, test-framework-hunit
-      , test-framework-quickcheck2
-      }:
-      mkDerivation {
-        pname = "text";
-        version = "1.2.2.1";
-        src = "${ghcjsBoot}/boot/text";
-        doCheck = false;
-        libraryHaskellDepends = [
-          array base binary bytestring deepseq ghc-prim integer-gmp
-        ];
-        testHaskellDepends = [
-          array base binary bytestring deepseq directory ghc-prim HUnit
-          integer-gmp QuickCheck quickcheck-unicode random test-framework
-          test-framework-hunit test-framework-quickcheck2
-        ];
-        jailbreak = true;
-        homepage = "https://github.com/bos/text";
-        description = "An efficient packed Unicode text type";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  th-abstraction = callPackage
-    ({ mkDerivation, base, containers, ghc-prim, stdenv
-      , template-haskell
-      }:
-      mkDerivation {
-        pname = "th-abstraction";
-        version = "0.2.6.0";
-        src = "${ghcjsBoot}/boot/th-abstraction";
-        doCheck = false;
-        libraryHaskellDepends = [
-          base containers ghc-prim template-haskell
-        ];
-        testHaskellDepends = [ base containers template-haskell ];
-        jailbreak = true;
-        homepage = "https://github.com/glguy/th-abstraction";
-        description = "Nicer interface for reified information about data types";
-        license = stdenv.lib.licenses.isc;
-      }) {};
-  time-locale-compat = callPackage
-    ({ mkDerivation, base, old-locale, stdenv, time }:
-      mkDerivation {
-        pname = "time-locale-compat";
-        version = "0.1.1.3";
-        src = "${ghcjsBoot}/boot/time-locale-compat";
-        doCheck = false;
-        libraryHaskellDepends = [ base old-locale time ];
-        jailbreak = true;
-        homepage = "https://github.com/khibino/haskell-time-locale-compat";
-        description = "Compatibility of TimeLocale between old-locale and time-1.5";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  transformers-compat = callPackage
-    ({ mkDerivation, base, ghc-prim, stdenv, transformers }:
-      mkDerivation {
-        pname = "transformers-compat";
-        version = "0.5.1.4";
-        src = "${ghcjsBoot}/boot/transformers-compat";
-        doCheck = false;
-        libraryHaskellDepends = [ base ghc-prim transformers ];
-        jailbreak = true;
-        homepage = "http://github.com/ekmett/transformers-compat/";
-        description = "A small compatibility shim exposing the new types from transformers 0.3 and 0.4 to older Haskell platforms.";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  unordered-containers = callPackage
-    ({ mkDerivation, base, bytestring, ChasingBottoms, containers
-      , criterion, deepseq, deepseq-generics, hashable, hashmap, HUnit
-      , mtl, QuickCheck, random, stdenv, test-framework
-      , test-framework-hunit, test-framework-quickcheck2
-      }:
-      mkDerivation {
-        pname = "unordered-containers";
-        version = "0.2.7.2";
-        src = "${ghcjsBoot}/boot/unordered-containers";
-        doCheck = false;
-        libraryHaskellDepends = [ base deepseq hashable ];
-        testHaskellDepends = [
-          base ChasingBottoms containers hashable HUnit QuickCheck
-          test-framework test-framework-hunit test-framework-quickcheck2
-        ];
-        benchmarkHaskellDepends = [
-          base bytestring containers criterion deepseq deepseq-generics
-          hashable hashmap mtl random
-        ];
-        jailbreak = true;
-        homepage = "https://github.com/tibbe/unordered-containers";
-        description = "Efficient hashing-based container types";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  uuid-types = callPackage
-    ({ mkDerivation, base, binary, bytestring, containers, criterion
-      , deepseq, hashable, HUnit, QuickCheck, random, stdenv, tasty
-      , tasty-hunit, tasty-quickcheck, text, unordered-containers
-      }:
-      mkDerivation {
-        pname = "uuid-types";
-        version = "1.0.3";
-        src = "${ghcjsBoot}/boot/uuid/uuid-types";
-        doCheck = false;
-        libraryHaskellDepends = [
-          base binary bytestring deepseq hashable random text
-        ];
-        testHaskellDepends = [
-          base bytestring HUnit QuickCheck tasty tasty-hunit tasty-quickcheck
-        ];
-        benchmarkHaskellDepends = [
-          base bytestring containers criterion deepseq random
-          unordered-containers
-        ];
-        jailbreak = true;
-        homepage = "https://github.com/hvr/uuid";
-        description = "Type definitions for Universally Unique Identifiers";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  vector = callPackage
-    ({ mkDerivation, base, deepseq, ghc-prim, primitive, QuickCheck
-      , random, stdenv, template-haskell, test-framework
-      , test-framework-quickcheck2, transformers
-      }:
-      mkDerivation {
-        pname = "vector";
-        version = "0.11.0.0";
-        src = "${ghcjsBoot}/boot/vector";
-        doCheck = false;
-        libraryHaskellDepends = [ base deepseq ghc-prim primitive ];
-        testHaskellDepends = [
-          base QuickCheck random template-haskell test-framework
-          test-framework-quickcheck2 transformers
-        ];
-        jailbreak = true;
-        homepage = "https://github.com/haskell/vector";
-        description = "Efficient Arrays";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-  ghcjs-base = callPackage
-    ({ mkDerivation, aeson, array, attoparsec, base, bytestring
-      , containers, deepseq, directory, dlist, ghc-prim, ghcjs-prim
-      , hashable, HUnit, integer-gmp, primitive, QuickCheck
-      , quickcheck-unicode, random, scientific, stdenv, test-framework
-      , test-framework-hunit, test-framework-quickcheck2, text, time
-      , transformers, unordered-containers, vector
-      }:
-      mkDerivation {
-        pname = "ghcjs-base";
-        version = "0.2.0.0";
-        src = "${ghcjsBoot}/ghcjs/ghcjs-base";
-        doCheck = false;
-        libraryHaskellDepends = [
-          aeson attoparsec base bytestring containers deepseq dlist ghc-prim
-          ghcjs-prim hashable integer-gmp primitive scientific text time
-          transformers unordered-containers vector
-        ];
-        testHaskellDepends = [
-          array base bytestring deepseq directory ghc-prim ghcjs-prim HUnit
-          primitive QuickCheck quickcheck-unicode random test-framework
-          test-framework-hunit test-framework-quickcheck2 text
-        ];
-        jailbreak = true;
-        homepage = "http://github.com/ghcjs/ghcjs-base";
-        description = "base library for GHCJS";
-        license = stdenv.lib.licenses.mit;
-      }) {};
-  Cabal = callPackage
-    ({ mkDerivation, array, base, binary, bytestring, containers
-      , deepseq, directory, exceptions, filepath, old-time, pretty
-      , process, QuickCheck, regex-posix, stdenv, tagged, tasty
-      , tasty-hunit, tasty-quickcheck, time, transformers, unix
-      }:
-      mkDerivation {
-        pname = "Cabal";
-        version = "1.24.0.0";
-        src = "${ghcjsBoot}/boot/cabal/Cabal";
-        doCheck = false;
-        libraryHaskellDepends = [
-          array base binary bytestring containers deepseq directory filepath
-          pretty process time unix
-        ];
-        testHaskellDepends = [
-          base bytestring containers directory exceptions filepath old-time
-          pretty process QuickCheck regex-posix tagged tasty tasty-hunit
-          tasty-quickcheck transformers unix
-        ];
-        jailbreak = true;
-        homepage = "http://www.haskell.org/cabal/";
-        description = "A framework for packaging Haskell software";
-        license = stdenv.lib.licenses.bsd3;
-      }) {};
-}
diff --git a/pkgs/development/haskell-modules/configuration-ghc-7.10.x.nix b/pkgs/development/haskell-modules/configuration-ghc-7.10.x.nix
deleted file mode 100644
index 85efecc8ed3b..000000000000
--- a/pkgs/development/haskell-modules/configuration-ghc-7.10.x.nix
+++ /dev/null
@@ -1,239 +0,0 @@
-{ pkgs, haskellLib }:
-
-with haskellLib;
-
-self: super: {
-
-  # Suitable LLVM version.
-  llvmPackages = pkgs.llvmPackages_35;
-
-  # Disable GHC 7.10.x core libraries.
-  array = null;
-  base = null;
-  binary = null;
-  bin-package-db = null;
-  bytestring = null;
-  Cabal = null;
-  containers = null;
-  deepseq = null;
-  directory = null;
-  filepath = null;
-  ghc-boot = null;
-  ghc-boot-th = null;
-  ghc-prim = null;
-  ghci = null;
-  haskeline = null;
-  hoopl = null;
-  hpc = null;
-  integer-gmp = null;
-  pretty = null;
-  process = null;
-  rts = null;
-  template-haskell = null;
-  terminfo = null;
-  time = null;
-  transformers = null;
-  unix = null;
-  xhtml = null;
-
-  # These are now core libraries in GHC 8.4.x.
-  mtl = self.mtl_2_2_2;
-  parsec = self.parsec_3_1_13_0;
-  parsec_3_1_13_0 = addBuildDepends super.parsec_3_1_13_0 [self.fail self.semigroups];
-  stm = self.stm_2_5_0_0;
-  text = self.text_1_2_3_1;
-
-  # Build jailbreak-cabal with the latest version of Cabal.
-  jailbreak-cabal = super.jailbreak-cabal.override { Cabal = self.Cabal_1_24_2_0; };
-
-  gtk2hs-buildtools = super.gtk2hs-buildtools.override { Cabal = self.buildHaskellPackages.Cabal_1_24_2_0; };
-
-  # https://github.com/mrkkrp/megaparsec/issues/282
-  megaparsec = addBuildDepend (dontCheck super.megaparsec) self.fail;
-
-  Extra = appendPatch super.Extra (pkgs.fetchpatch {
-    url = "https://github.com/seereason/sr-extra/commit/29787ad4c20c962924b823d02a7335da98143603.patch";
-    sha256 = "193i1xmq6z0jalwmq0mhqk1khz6zz0i1hs6lgfd7ybd6qyaqnf5f";
-  });
-
-  # Requires ghc 8.2
-  ghc-proofs = dontDistribute super.ghc-proofs;
-
-  # haddock: No input file(s).
-  nats = dontHaddock super.nats;
-  bytestring-builder = dontHaddock super.bytestring-builder;
-
-  # Setup: At least the following dependencies are missing: base <4.8
-  hspec-expectations = overrideCabal super.hspec-expectations (drv: {
-    postPatch = "sed -i -e 's|base < 4.8|base|' hspec-expectations.cabal";
-  });
-  utf8-string = overrideCabal super.utf8-string (drv: {
-    postPatch = "sed -i -e 's|base >= 3 && < 4.8|base|' utf8-string.cabal";
-  });
-
-  # acid-state/safecopy#25 acid-state/safecopy#26
-  safecopy = dontCheck (super.safecopy);
-
-  # test suite broken, some instance is declared twice.
-  # https://bitbucket.org/FlorianHartwig/attobencode/issue/1
-  AttoBencode = dontCheck super.AttoBencode;
-
-  # Test suite fails with some (seemingly harmless) error.
-  # https://code.google.com/p/scrapyourboilerplate/issues/detail?id=24
-  syb = dontCheck super.syb;
-
-  # Test suite has stricter version bounds
-  retry = dontCheck super.retry;
-
-  # test/System/Posix/Types/OrphansSpec.hs:19:13:
-  #    Not in scope: type constructor or class ‘Int32’
-  base-orphans = dontCheck super.base-orphans;
-
-  # Test suite fails with time >= 1.5
-  http-date = dontCheck super.http-date;
-
-  # Version 1.19.5 fails its test suite.
-  happy = dontCheck super.happy;
-
-  # Upstream was notified about the over-specified constraint on 'base'
-  # but refused to do anything about it because he "doesn't want to
-  # support a moving target". Go figure.
-  barecheck = doJailbreak super.barecheck;
-
-  # https://github.com/kazu-yamamoto/unix-time/issues/30
-  unix-time = dontCheck super.unix-time;
-
-  # diagrams/monoid-extras#19
-  monoid-extras = overrideCabal super.monoid-extras (drv: {
-    prePatch = "sed -i 's|4\.8|4.9|' monoid-extras.cabal";
-  });
-
-  # diagrams/statestack#5
-  statestack = overrideCabal super.statestack (drv: {
-    prePatch = "sed -i 's|4\.8|4.9|' statestack.cabal";
-  });
-
-  # diagrams/diagrams-core#83
-  diagrams-core = overrideCabal super.diagrams-core (drv: {
-    prePatch = "sed -i 's|4\.8|4.9|' diagrams-core.cabal";
-  });
-
-  timezone-olson = doJailbreak super.timezone-olson;
-  xmonad-extras = overrideCabal super.xmonad-extras (drv: {
-    postPatch = ''
-      sed -i -e "s,<\*,<¤,g" XMonad/Actions/Volume.hs
-    '';
-  });
-
-  # Workaround for a workaround, see comment for "ghcjs" flag.
-  jsaddle = let jsaddle' = disableCabalFlag super.jsaddle "ghcjs";
-            in addBuildDepends jsaddle' [ self.glib self.gtk3 self.webkitgtk3
-                                          self.webkitgtk3-javascriptcore ];
-
-  # https://github.com/lymar/hastache/issues/47
-  hastache = dontCheck super.hastache;
-
-  # The compat library is empty in the presence of mtl 2.2.x.
-  mtl-compat = dontHaddock super.mtl-compat;
-
-  # https://github.com/bos/bloomfilter/issues/11
-  bloomfilter = dontHaddock (appendConfigureFlag super.bloomfilter "--ghc-option=-XFlexibleContexts");
-
-  # https://github.com/ocharles/tasty-rerun/issues/5
-  tasty-rerun = dontHaddock (appendConfigureFlag super.tasty-rerun "--ghc-option=-XFlexibleContexts");
-
-  # http://hub.darcs.net/ivanm/graphviz/issue/5
-  graphviz = dontCheck (appendPatch super.graphviz ./patches/graphviz-fix-ghc710.patch);
-
-  # https://github.com/HugoDaniel/RFC3339/issues/14
-  timerep = dontCheck super.timerep;
-
-  # Required to fix version 0.91.0.0.
-  wx = dontHaddock (appendConfigureFlag super.wx "--ghc-option=-XFlexibleContexts");
-
-  # Inexplicable haddock failure
-  # https://github.com/gregwebs/aeson-applicative/issues/2
-  aeson-applicative = dontHaddock super.aeson-applicative;
-
-  # GHC 7.10.1 is affected by https://github.com/srijs/hwsl2/issues/1.
-  hwsl2 = dontCheck super.hwsl2;
-
-  # https://github.com/haskell/haddock/issues/427
-  haddock = dontCheck self.haddock_2_16_1;
-
-  # haddock-api >= 2.17 is GHC 8.0 only
-  haddock-api = self.haddock-api_2_16_1;
-  haddock-library = self.haddock-library_1_2_1;
-
-  # The tests in vty-ui do not build, but vty-ui itself builds.
-  vty-ui = enableCabalFlag super.vty-ui "no-tests";
-
-  # https://github.com/fpco/stackage/issues/1112
-  vector-algorithms = addBuildDepends (dontCheck super.vector-algorithms) [ self.mtl self.mwc-random ];
-
-  # vector with ghc < 8.0 needs semigroups
-  vector = addBuildDepend super.vector self.semigroups;
-
-  # too strict dependency on directory
-  tasty-ant-xml = doJailbreak super.tasty-ant-xml;
-
-  # https://github.com/thoughtpolice/hs-ed25519/issues/13
-  ed25519 = dontCheck super.ed25519;
-
-  # Breaks a dependency cycle between QuickCheck and semigroups
-  hashable = dontCheck super.hashable;
-  unordered-containers = dontCheck super.unordered-containers;
-
-  # GHC versions prior to 8.x require additional build inputs.
-  aeson = disableCabalFlag (addBuildDepend super.aeson self.semigroups) "old-locale";
-  ansi-wl-pprint = addBuildDepend super.ansi-wl-pprint self.semigroups;
-  attoparsec = addBuildDepends super.attoparsec (with self; [semigroups fail]);
-  bytes = addBuildDepend super.bytes self.doctest;
-  case-insensitive = addBuildDepend super.case-insensitive self.semigroups;
-  cmdargs = addBuildDepend super.cmdargs self.semigroups;
-  contravariant = addBuildDepend super.contravariant self.semigroups;
-  dependent-map = addBuildDepend super.dependent-map self.semigroups;
-  distributive = addBuildDepend (dontCheck super.distributive) self.semigroups;
-  Glob = addBuildDepends super.Glob (with self; [semigroups]);
-  hoauth2 = overrideCabal super.hoauth2 (drv: { testDepends = (drv.testDepends or []) ++ [ self.wai self.warp ]; });
-  hslogger = addBuildDepend super.hslogger self.HUnit;
-  intervals = addBuildDepends super.intervals (with self; [doctest QuickCheck]);
-  lens = addBuildDepend super.lens self.generic-deriving;
-  mono-traversable = addBuildDepend super.mono-traversable self.semigroups;
-  natural-transformation = addBuildDepend super.natural-transformation self.semigroups;
-  optparse-applicative = addBuildDepends super.optparse-applicative [self.semigroups self.fail];
-  parser-combinators = addBuildDepend super.parser-combinators self.semigroups;
-  QuickCheck = addBuildDepend super.QuickCheck self.semigroups;
-  reflection = addBuildDepend super.reflection self.semigroups;
-  semigroups = addBuildDepends (dontCheck super.semigroups) (with self; [hashable tagged text unordered-containers]);
-  tar = addBuildDepend super.tar self.semigroups;
-  texmath = addBuildDepend super.texmath self.network-uri;
-  yesod-auth-oauth2 = overrideCabal super.yesod-auth-oauth2 (drv: { testDepends = (drv.testDepends or []) ++ [ self.load-env self.yesod ]; });
-
-  # cereal must have `fail` in pre-ghc-8.0.x versions and tests require
-  # bytestring>=0.10.8.1.
-  cereal = dontCheck (addBuildDepend super.cereal self.fail);
-
-  # The test suite requires Cabal 1.24.x or later to compile.
-  comonad = dontCheck super.comonad;
-  semigroupoids = dontCheck super.semigroupoids;
-
-  # Newer versions require base >=4.9 && <5.
-  colour = self.colour_2_3_3;
-
-  # https://github.com/atzedijkstra/chr/issues/1
-  chr-pretty = doJailbreak super.chr-pretty;
-  chr-parse = doJailbreak super.chr-parse;
-
-  # The autogenerated Nix expressions don't take into
-  # account `if impl(ghc >= x.y)`, which is a common method to depend
-  # on `semigroups` or `fail` when building with GHC < 8.0.
-  system-filepath = addBuildDepend super.system-filepath self.semigroups;
-  haskell-src-exts = addBuildDepend super.haskell-src-exts self.semigroups;
-  free = addBuildDepend super.free self.fail;
-
-  # Newer versions don't build without base-4.9
-  resourcet = self.resourcet_1_1_11;
-  conduit = self.conduit_1_2_13_1;
-
-}
diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.0.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.0.x.nix
deleted file mode 100644
index 43f769ff6fd5..000000000000
--- a/pkgs/development/haskell-modules/configuration-ghc-8.0.x.nix
+++ /dev/null
@@ -1,91 +0,0 @@
-{ pkgs, haskellLib }:
-
-with haskellLib;
-
-self: super: {
-
-  # Suitable LLVM version.
-  llvmPackages = pkgs.llvmPackages_37;
-
-  # Disable GHC 8.0.x core libraries.
-  array = null;
-  base = null;
-  binary = null;
-  bytestring = null;
-  Cabal = null;
-  containers = null;
-  deepseq = null;
-  directory = null;
-  filepath = null;
-  ghc-boot = null;
-  ghc-boot-th = null;
-  ghc-compact = null;
-  ghc-prim = null;
-  ghci = null;
-  haskeline = null;
-  hoopl = null;
-  hpc = null;
-  integer-gmp = null;
-  pretty = null;
-  process = null;
-  rts = null;
-  template-haskell = null;
-  terminfo = null;
-  time = null;
-  transformers = null;
-  unix = null;
-  xhtml = null;
-
-  # These are now core libraries in GHC 8.4.x.
-  mtl = self.mtl_2_2_2;
-  parsec = self.parsec_3_1_13_0;
-  stm = self.stm_2_5_0_0;
-  text = self.text_1_2_3_1;
-
-  # https://github.com/bmillwood/applicative-quoters/issues/6
-  applicative-quoters = appendPatch super.applicative-quoters (pkgs.fetchpatch {
-    url = "https://patch-diff.githubusercontent.com/raw/bmillwood/applicative-quoters/pull/7.patch";
-    sha256 = "026vv2k3ks73jngwifszv8l59clg88pcdr4mz0wr0gamivkfa1zy";
-  });
-
-  # Requires ghc 8.2
-  ghc-proofs = dontDistribute super.ghc-proofs;
-
-  # https://github.com/thoughtbot/yesod-auth-oauth2/pull/77
-  yesod-auth-oauth2 = doJailbreak super.yesod-auth-oauth2;
-
-  # https://github.com/nominolo/ghc-syb/issues/20
-  ghc-syb-utils = dontCheck super.ghc-syb-utils;
-
-  # Newer versions require ghc>=8.2
-  apply-refact = super.apply-refact_0_3_0_1;
-
-  # This builds needs the latest Cabal version.
-  cabal2nix = super.cabal2nix.overrideScope (self: super: { Cabal = self.Cabal_2_0_1_1; });
-
-  # Add appropriate Cabal library to build this code.
-  stack = addSetupDepend super.stack self.Cabal_2_0_1_1;
-
-  # inline-c > 0.5.6.0 requires template-haskell >= 2.12
-  inline-c = super.inline-c_0_5_6_1;
-  inline-c-cpp = super.inline-c-cpp_0_1_0_0;
-
-  # test dep hedgehog pulls in concurrent-output, which does not build
-  # due to processing version mismatch
-  either = dontCheck super.either;
-
-  # test dep tasty has a version mismatch
-  indents = dontCheck super.indents;
-
-  # Newer versions require GHC 8.2.
-  haddock-library = self.haddock-library_1_4_3;
-  haddock-api = self.haddock-api_2_17_4;
-  haddock = self.haddock_2_17_5;
-
-  # GHC 8.0 doesn't have semigroups included by default
-  ListLike = addBuildDepend super.ListLike self.semigroups;
-
-  # Add missing build depedency for this compiler.
-  base-compat-batteries = addBuildDepend super.base-compat-batteries self.bifunctors;
-
-}
diff --git a/pkgs/development/haskell-modules/configuration-halvm-2.4.0.nix b/pkgs/development/haskell-modules/configuration-halvm-2.4.0.nix
deleted file mode 100644
index be90794f58d9..000000000000
--- a/pkgs/development/haskell-modules/configuration-halvm-2.4.0.nix
+++ /dev/null
@@ -1,59 +0,0 @@
-{ pkgs, haskellLib }:
-
-with haskellLib;
-
-self: super: {
-
-  # Suitable LLVM version.
-  llvmPackages = pkgs.llvmPackages_35;
-
-  # Disable GHC 8.0.x core libraries.
-  array = null;
-  base = null;
-  binary = null;
-  bytestring = null;
-  Cabal = null;
-  containers = null;
-  deepseq = null;
-  directory = null;
-  filepath = null;
-  ghc-boot = null;
-  ghc-boot-th = null;
-  ghc-prim = null;
-  ghci = null;
-  haskeline = null;
-  hoopl = null;
-  hpc = null;
-  integer-gmp = null;
-  pretty = null;
-  process = null;
-  rts = null;
-  template-haskell = null;
-  terminfo = null;
-  time = null;
-  transformers = null;
-  unix = null;
-  xhtml = null;
-
-  # cabal-install can use the native Cabal library.
-  cabal-install = super.cabal-install.override { Cabal = null; };
-
-  # jailbreak-cabal can use the native Cabal library.
-  jailbreak-cabal = super.jailbreak-cabal.override { Cabal = null; };
-
-  # https://github.com/bmillwood/applicative-quoters/issues/6
-  applicative-quoters = appendPatch super.applicative-quoters (pkgs.fetchpatch {
-    url = "https://patch-diff.githubusercontent.com/raw/bmillwood/applicative-quoters/pull/7.patch";
-    sha256 = "026vv2k3ks73jngwifszv8l59clg88pcdr4mz0wr0gamivkfa1zy";
-  });
-
-  # https://github.com/christian-marie/xxhash/issues/3
-  xxhash = doJailbreak super.xxhash;
-
-  # https://github.com/Deewiant/glob/issues/8
-  Glob = doJailbreak super.Glob;
-
-  # http://hub.darcs.net/dolio/vector-algorithms/issue/9#comment-20170112T145715
-  vector-algorithms = dontCheck super.vector-algorithms;
-
-}
diff --git a/pkgs/top-level/haskell-packages.nix b/pkgs/top-level/haskell-packages.nix
index dea3ba954253..13250ea8814b 100644
--- a/pkgs/top-level/haskell-packages.nix
+++ b/pkgs/top-level/haskell-packages.nix
@@ -8,8 +8,6 @@ let
     "ghc7103Binary"
     "ghc821Binary"
     "ghcjs"
-    "ghcjs710"
-    "ghcjs80"
     "ghcjs82"
     "ghcjs84"
     "integer-simple"
@@ -47,28 +45,12 @@ in {
     ghc7103Binary = callPackage ../development/compilers/ghc/7.10.3-binary.nix { };
     ghc821Binary = callPackage ../development/compilers/ghc/8.2.1-binary.nix { };
 
-    ghc7103 = callPackage ../development/compilers/ghc/7.10.3.nix {
-      bootPkgs = packages.ghc7103Binary;
-      buildLlvmPackages = buildPackages.llvmPackages_35;
-      llvmPackages = pkgs.llvmPackages_35;
-    };
-    ghc802 = callPackage ../development/compilers/ghc/8.0.2.nix {
-      bootPkgs = packages.ghc7103Binary;
-      inherit (buildPackages.python27Packages) sphinx;
-      buildLlvmPackages = buildPackages.llvmPackages_37;
-      llvmPackages = pkgs.llvmPackages_37;
-    };
     ghc822 = callPackage ../development/compilers/ghc/8.2.2.nix {
       bootPkgs = packages.ghc821Binary;
       inherit (buildPackages.python3Packages) sphinx;
       buildLlvmPackages = buildPackages.llvmPackages_39;
       llvmPackages = pkgs.llvmPackages_39;
     };
-    ghc843 = callPackage ../development/compilers/ghc/8.4.3.nix {
-      bootPkgs = packages.ghc821Binary;
-      buildLlvmPackages = buildPackages.llvmPackages_5;
-      llvmPackages = pkgs.llvmPackages_5;
-    };
     ghc844 = callPackage ../development/compilers/ghc/8.4.4.nix {
       bootPkgs = packages.ghc821Binary;
       buildLlvmPackages = buildPackages.llvmPackages_5;
@@ -85,18 +67,6 @@ in {
       llvmPackages = pkgs.llvmPackages_5;
     };
     ghcjs = compiler.ghcjs84;
-    # Use `import` because `callPackage inside`.
-    ghcjs710 = import ../development/compilers/ghcjs/7.10 {
-      bootPkgs = packages.ghc7103;
-      inherit (pkgs) cabal-install;
-      inherit (buildPackages) fetchgit fetchFromGitHub;
-    };
-    # `import` on purpose; see above.
-    ghcjs80 = import ../development/compilers/ghcjs/8.0 {
-      bootPkgs = packages.ghc802;
-      inherit (pkgs) cabal-install;
-      inherit (buildPackages) fetchgit fetchFromGitHub;
-    };
     ghcjs82 = callPackage ../development/compilers/ghcjs-ng {
       bootPkgs = packages.ghc822;
       ghcjsSrcJson = ../development/compilers/ghcjs-ng/8.2/git.json;
@@ -126,22 +96,12 @@ in {
   # Always get compilers from `buildPackages`
   packages = let bh = buildPackages.haskell; in {
 
-    ghc7103 = callPackage ../development/haskell-modules {
-      buildHaskellPackages = bh.packages.ghc7103;
-      ghc = bh.compiler.ghc7103;
-      compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-7.10.x.nix { };
-    };
     ghc7103Binary = callPackage ../development/haskell-modules {
       buildHaskellPackages = bh.packages.ghc7103Binary;
       ghc = bh.compiler.ghc7103Binary;
       compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-7.10.x.nix { };
       packageSetConfig = bootstrapPackageSet;
     };
-    ghc802 = callPackage ../development/haskell-modules {
-      buildHaskellPackages = bh.packages.ghc802;
-      ghc = bh.compiler.ghc802;
-      compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-8.0.x.nix { };
-    };
     ghc821Binary = callPackage ../development/haskell-modules {
       buildHaskellPackages = bh.packages.ghc821Binary;
       ghc = bh.compiler.ghc821Binary;

From 5ca1b19dab954a5b1f59776b4e9ea4b8798bd44d Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Tue, 7 Aug 2018 17:17:18 -0500
Subject: [PATCH 0341/1129] timescaledb-parallel-copy: init at 2018-05-14

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 .../timescaledb-parallel-copy/default.nix     | 26 +++++++++++++++++++
 .../timescaledb-parallel-copy/deps.nix        | 21 +++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 3 files changed, 49 insertions(+)
 create mode 100644 pkgs/development/tools/database/timescaledb-parallel-copy/default.nix
 create mode 100644 pkgs/development/tools/database/timescaledb-parallel-copy/deps.nix

diff --git a/pkgs/development/tools/database/timescaledb-parallel-copy/default.nix b/pkgs/development/tools/database/timescaledb-parallel-copy/default.nix
new file mode 100644
index 000000000000..d667e49e7cbe
--- /dev/null
+++ b/pkgs/development/tools/database/timescaledb-parallel-copy/default.nix
@@ -0,0 +1,26 @@
+{ stdenv, buildGoPackage, fetchFromGitHub }:
+
+buildGoPackage rec {
+  name = "timescaledb-parallel-copy-${version}";
+  version = "2018-05-14";
+
+  owner  = "timescale";
+  repo   = "timescaledb-parallel-copy";
+
+  goPackagePath = with src; "github.com/${owner}/${repo}";
+  goDeps = ./deps.nix;
+
+  src = fetchFromGitHub {
+    inherit owner repo;
+    rev    = "20d3e8f8219329f2f4b0a5aa985f280dd04d10bb";
+    sha256 = "0waaccw991cnxaxjdxh9ksb94kiiyx1r7gif6pkd5k58js0kfvdn";
+  };
+
+  meta = with stdenv.lib; {
+    description = "Bulk, parallel insert of CSV records into PostgreSQL";
+    homepage    = http://github.com/timescale/timescaledb-parallel-copy;
+    license     = licenses.asl20;
+    platforms   = platforms.linux;
+    maintainers = with maintainers; [ thoughtpolice ];
+  };
+}
diff --git a/pkgs/development/tools/database/timescaledb-parallel-copy/deps.nix b/pkgs/development/tools/database/timescaledb-parallel-copy/deps.nix
new file mode 100644
index 000000000000..c672611e09c1
--- /dev/null
+++ b/pkgs/development/tools/database/timescaledb-parallel-copy/deps.nix
@@ -0,0 +1,21 @@
+# This file was generated by https://github.com/kamilchm/go2nix v1.2.1
+[
+  {
+    goPackagePath = "github.com/jmoiron/sqlx";
+    fetch = {
+      type = "git";
+      url = "https://github.com/jmoiron/sqlx";
+      rev = "0dae4fefe7c0e190f7b5a78dac28a1c82cc8d849";
+      sha256 = "0r8fyj70n0v84byvagw8w8rzz532s94mjr72b9sx018j0b6xglmy";
+    };
+  }
+  {
+    goPackagePath = "github.com/lib/pq";
+    fetch = {
+      type = "git";
+      url = "https://github.com/lib/pq";
+      rev = "90697d60dd844d5ef6ff15135d0203f65d2f53b8";
+      sha256 = "0hb4bfsk8g5473yzbf3lzrb373xicakjznkf0v085xgimz991i9r";
+    };
+  }
+]
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 9b9bcacc4512..73f2d4489092 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -13594,6 +13594,8 @@ with pkgs;
     libmemcached = null; # Detection is broken upstream
   };
 
+  timescaledb-parallel-copy = callPackage ../development/tools/database/timescaledb-parallel-copy { };
+
   postgresql = postgresql_9_6;
 
   inherit (callPackages ../servers/sql/postgresql { })

From bf26876a2829232b45061976ed455c2048ebab1c Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Fri, 2 Nov 2018 20:16:56 +0100
Subject: [PATCH 0342/1129] zsh-git-prompt: don't hard-code any particular
 compiler version

Just use whatever is the current default.
---
 pkgs/shells/zsh/zsh-git-prompt/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/shells/zsh/zsh-git-prompt/default.nix b/pkgs/shells/zsh/zsh-git-prompt/default.nix
index 7318da83d176..761ad071da95 100644
--- a/pkgs/shells/zsh/zsh-git-prompt/default.nix
+++ b/pkgs/shells/zsh/zsh-git-prompt/default.nix
@@ -29,10 +29,10 @@
 , python
 , git
 , lib
-, ghcVersion ? "ghc802"
+, haskellPackages
 }:
 
-haskell.packages.${ghcVersion}.callPackage
+haskellPackages.callPackage
   ({ mkDerivation, base, HUnit, parsec, process, QuickCheck, stdenv }:
    mkDerivation rec {
      pname = "zsh-git-prompt";

From fdc19ff3111baa03de4c2d5f1a64318886dc4b63 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Fri, 2 Nov 2018 20:23:22 +0100
Subject: [PATCH 0343/1129] haskell-polyparse: use latest version for ghc-8.6.1

---
 pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
index fa14d21afa28..bf021956593c 100644
--- a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
+++ b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
@@ -69,6 +69,7 @@ self: super: {
   megaparsec = dontCheck (doJailbreak super.megaparsec);
   neat-interpolation = dontCheck super.neat-interpolation;  # test suite depends on broken HTF
   patience = markBrokenVersion "0.1.1" super.patience;
+  polyparse = self.polyparse_1_12_1;
   primitive = self.primitive_0_6_4_0;
   QuickCheck = self.QuickCheck_2_12_6_1;
   semigroupoids = self.semigroupoids_5_3_1;

From 0a2420bccd5660b3af642039d945e512490d51ae Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Fri, 2 Nov 2018 16:01:05 -0400
Subject: [PATCH 0344/1129] nasc: 0.4.7 -> 0.5.0

---
 .../science/math/nasc/default.nix             | 30 +++++++------------
 1 file changed, 10 insertions(+), 20 deletions(-)

diff --git a/pkgs/applications/science/math/nasc/default.nix b/pkgs/applications/science/math/nasc/default.nix
index cac403b131b8..bba08e3ae291 100644
--- a/pkgs/applications/science/math/nasc/default.nix
+++ b/pkgs/applications/science/math/nasc/default.nix
@@ -7,49 +7,39 @@
 , gnome3
 , cmake
 , ninja
-, vala
+, vala_0_40
 , libqalculate
 , gobjectIntrospection
 , wrapGAppsHook }:
 
 stdenv.mkDerivation rec {
   name = "nasc-${version}";
-  version = "0.4.7";
+  version = "0.5.0";
 
   src = fetchFromGitHub {
     owner = "parnold-x";
     repo = "nasc";
     rev = version;
-    sha256 = "0p74953pdgsijvqj3msssqiwm6sc1hzp68dlmjamqrqirwgqv5aa";
+    sha256 = "1rrp3djsv7lrgsqjn7x50msv0c5ffhz90lj1v11di0kp05m6q9j9";
   };
 
-  patches = [
-    # Install libqalculatenasc.so
-    (fetchpatch {
-      url = https://github.com/parnold-x/nasc/commit/93a799f9afb3e32f3f1a54e056b59570aae2e437.patch;
-      sha256 = "1m32w2zaswzxnzbr7p3lf8s6fac4mjvfhm8v9k59b4jyzmvrl631";
-    })
-    (fetchpatch {
-      url = https://github.com/parnold-x/nasc/commit/570b49169326de154af2cf43c5f12268fff1dc6d.patch;
-      sha256 = "1y3w6rxn0453iscx2xg427wy1bd5kv4z1c41hhbjmg614ycp6bka";
-    })
-  ];
-
   nativeBuildInputs = [
     pkgconfig
     wrapGAppsHook
-    vala
+    vala_0_40 # should be `elementary.vala` when elementary attribute set is merged
     cmake
     ninja
     gobjectIntrospection # for setup-hook
   ];
+  
   buildInputs = [
-    libqalculate
-    gtk3
-    granite
+    gnome3.defaultIconTheme # should be `elementary.defaultIconTheme`when elementary attribute set is merged
+    gnome3.gtksourceview
     gnome3.libgee
     gnome3.libsoup
-    gnome3.gtksourceview
+    granite
+    gtk3
+    libqalculate
   ];
 
   meta = with stdenv.lib; {

From 45db4162014e32ac3039dbabe524766789c58413 Mon Sep 17 00:00:00 2001
From: Langston Barrett <langston.barrett@gmail.com>
Date: Fri, 2 Nov 2018 13:03:35 -0700
Subject: [PATCH 0345/1129] folly: 2018.08.27.00 -> 2018.10.29.00

Folly disabled autotools-based builds in favor of CMake.
---
 pkgs/development/libraries/folly/default.nix | 27 +++++++++++---------
 1 file changed, 15 insertions(+), 12 deletions(-)

diff --git a/pkgs/development/libraries/folly/default.nix b/pkgs/development/libraries/folly/default.nix
index 9694765bb93f..1598dafaad05 100644
--- a/pkgs/development/libraries/folly/default.nix
+++ b/pkgs/development/libraries/folly/default.nix
@@ -1,26 +1,29 @@
-{ stdenv, fetchFromGitHub, autoreconfHook, pkgconfig, boost, libevent
-, double-conversion, glog, google-gflags, python, libiberty, openssl }:
+{ stdenv, fetchFromGitHub, cmake, boost, libevent, double-conversion, glog
+, google-gflags, libiberty, openssl }:
 
 stdenv.mkDerivation rec {
   name = "folly-${version}";
-  version = "2018.08.27.00";
+  version = "2018.10.29.00";
 
   src = fetchFromGitHub {
     owner = "facebook";
     repo = "folly";
     rev = "v${version}";
-    sha256 = "0slnhn8q26mj23gm36c61b4ar857q8c844ifpvw4q329nndbrgcz";
+    sha256 = "0bbp4w8wbawh3ilgkl7rwvbqkdczpvfn92f9lcvxj8sili0nldab";
   };
 
-  nativeBuildInputs = [ autoreconfHook python pkgconfig ];
-  buildInputs = [ libiberty boost libevent double-conversion glog google-gflags openssl ];
+  nativeBuildInputs = [ cmake ];
 
-  postPatch = "cd folly";
-  preBuild = ''
-    patchShebangs build
-  '';
-
-  configureFlags = [ "--with-boost-libdir=${boost.out}/lib" ];
+  # See CMake/folly-deps.cmake in the Folly source tree.
+  buildInputs = [
+    boost
+    double-conversion
+    glog
+    google-gflags
+    libevent
+    libiberty
+    openssl
+  ];
 
   enableParallelBuilding = true;
 

From 0b66270adac94937ee3c4a3ad4de644e8b65c679 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 2 Nov 2018 15:10:57 -0500
Subject: [PATCH 0346/1129] avrlibc: set platforms to avr-none

It will only build on avr architectures.
---
 pkgs/development/misc/avr/libc/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/misc/avr/libc/default.nix b/pkgs/development/misc/avr/libc/default.nix
index afe30e4b5eef..ab9a696afb00 100644
--- a/pkgs/development/misc/avr/libc/default.nix
+++ b/pkgs/development/misc/avr/libc/default.nix
@@ -25,7 +25,7 @@ stdenv.mkDerivation {
     description = "a C runtime library for AVR microcontrollers";
     homepage = http://savannah.nongnu.org/projects/avr-libc/;
     license = licenses.bsd3;
-    platforms = platforms.all;
+    platforms = [ "avr-none" ];
     maintainers = with maintainers; [ mguentner ];
   };
 }

From 836cbf6a5ca44fd18219c7ea80550d0e38a66f90 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 2 Nov 2018 15:28:53 -0500
Subject: [PATCH 0347/1129] =?UTF-8?q?opentx:=20don=E2=80=99t=20use=20nano?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Vanilla newlib doesn’t install nano.
---
 pkgs/applications/misc/opentx/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/applications/misc/opentx/default.nix b/pkgs/applications/misc/opentx/default.nix
index 0aecc43d1e53..95a2f2b940c2 100644
--- a/pkgs/applications/misc/opentx/default.nix
+++ b/pkgs/applications/misc/opentx/default.nix
@@ -42,6 +42,7 @@ in stdenv.mkDerivation {
     # XXX I would prefer to include these here, though we will need to file a bug upstream to get that changed.
     #"-DDFU_UTIL_PATH=${dfu-util}/bin/dfu-util"
     #"-DAVRDUDE_PATH=${avrdude}/bin/avrdude"
+    "-DNANO=OFF"
   ];
 
   meta = with stdenv.lib; {

From 5df22e343d17213cf986653f5d730f738f9cac71 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 2 Nov 2018 15:29:30 -0500
Subject: [PATCH 0348/1129] =?UTF-8?q?axoloti:=20don=E2=80=99t=20hardode=20?=
 =?UTF-8?q?paths?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Some of these paths are not in gcc-arm-embedded (instead binutils-arm-embedded).
---
 pkgs/applications/audio/axoloti/default.nix | 9 ---------
 1 file changed, 9 deletions(-)

diff --git a/pkgs/applications/audio/axoloti/default.nix b/pkgs/applications/audio/axoloti/default.nix
index 3c3198e17348..e3f1b6acf874 100644
--- a/pkgs/applications/audio/axoloti/default.nix
+++ b/pkgs/applications/audio/axoloti/default.nix
@@ -40,15 +40,6 @@ stdenv.mkDerivation rec {
     substituteInPlace "chibios/os/various/shell.c" \
       --replace "#ifdef __DATE__" "#if 0"
 
-    # Hardcode full path to compiler tools
-    for f in "firmware/Makefile.patch" \
-             "firmware/Makefile" \
-             "firmware/flasher/Makefile" \
-             "firmware/mounter/Makefile"; do
-      substituteInPlace "$f" \
-        --replace "arm-none-eabi-" "${gcc-arm-embedded}/bin/arm-none-eabi-"
-    done
-
     # Hardcode path to "make"
     for f in "firmware/compile_firmware_linux.sh" \
              "firmware/compile_patch_linux.sh"; do

From 94a2cdebaa0f25d52a08e3b2d3bdcdabd62e16ba Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 2 Nov 2018 15:30:10 -0500
Subject: [PATCH 0349/1129] =?UTF-8?q?inav:=20don=E2=80=99t=20use=20nano?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

not in newlib
---
 pkgs/development/misc/stm32/inav/default.nix | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/pkgs/development/misc/stm32/inav/default.nix b/pkgs/development/misc/stm32/inav/default.nix
index 9c35ac2ffce1..102b1eb8048d 100644
--- a/pkgs/development/misc/stm32/inav/default.nix
+++ b/pkgs/development/misc/stm32/inav/default.nix
@@ -26,6 +26,9 @@ in stdenv.mkDerivation rec {
     sed -ri "s/REVISION.*=.*shell git.*/REVISION = ${builtins.substring 0 10 src.rev}/" Makefile # Simulate abbrev'd rev.
     sed -ri "s/-j *[0-9]+//" Makefile # Eliminate parallel build args in submakes
     sed -ri "s/binary hex/hex/" Makefile # No need for anything besides .hex
+
+    substitutateInPlace Makefile \
+      --replace "--specs=nano.specs" ""
   '';
 
   enableParallelBuilding = true;

From a4234645fe2445fe503413b159a842dbb280a777 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 2 Nov 2018 15:30:30 -0500
Subject: [PATCH 0350/1129] =?UTF-8?q?betaflight:=20don=E2=80=99t=20use=20n?=
 =?UTF-8?q?ano?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

not in newlib
---
 pkgs/development/misc/stm32/betaflight/default.nix | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/pkgs/development/misc/stm32/betaflight/default.nix b/pkgs/development/misc/stm32/betaflight/default.nix
index 21230464e747..fbe48803f2db 100644
--- a/pkgs/development/misc/stm32/betaflight/default.nix
+++ b/pkgs/development/misc/stm32/betaflight/default.nix
@@ -32,6 +32,9 @@ in stdenv.mkDerivation rec {
   postPatch = ''
     sed -ri "s/REVISION.*=.*git log.*/REVISION = ${builtins.substring 0 10 src.rev}/" Makefile # Simulate abbrev'd rev.
     sed -ri "s/binary hex/hex/" Makefile # No need for anything besides .hex
+
+    substitutateInPlace Makefile \
+      --replace "--specs=nano.specs" ""
   '';
 
   enableParallelBuilding = true;

From ec7cb84bf07ef1064a28b0b4dbb370efacd9e56e Mon Sep 17 00:00:00 2001
From: Robin Gloster <mail@glob.in>
Date: Fri, 2 Nov 2018 21:22:51 +0100
Subject: [PATCH 0351/1129] gitlab: refactor and fix test

---
 nixos/modules/services/misc/gitlab.nix        | 214 ++++++++----------
 nixos/release.nix                             |   2 +-
 nixos/tests/gitlab.nix                        |  18 +-
 .../version-management/gitlab/default.nix     |  12 +-
 4 files changed, 109 insertions(+), 137 deletions(-)

diff --git a/nixos/modules/services/misc/gitlab.nix b/nixos/modules/services/misc/gitlab.nix
index 8ea831afb7c1..ce1cb6ad37f2 100644
--- a/nixos/modules/services/misc/gitlab.nix
+++ b/nixos/modules/services/misc/gitlab.nix
@@ -14,15 +14,16 @@ let
   pathUrlQuote = url: replaceStrings ["/"] ["%2F"] url;
   pgSuperUser = config.services.postgresql.superUser;
 
-  databaseYml = ''
-    production:
-      adapter: postgresql
-      database: ${cfg.databaseName}
-      host: ${cfg.databaseHost}
-      password: ${cfg.databasePassword}
-      username: ${cfg.databaseUsername}
-      encoding: utf8
-  '';
+  databaseConfig = {
+    production = {
+      adapter = "postgresql";
+      database = cfg.databaseName;
+      host = cfg.databaseHost;
+      password = cfg.databasePassword;
+      username = cfg.databaseUsername;
+      encoding = "utf8";
+    };
+  };
 
   gitalyToml = pkgs.writeText "gitaly.toml" ''
     socket_path = "${lib.escape ["\""] gitalySocket}"
@@ -45,35 +46,31 @@ let
     '') gitlabConfig.production.repositories.storages))}
   '';
 
-  gitlabShellYml = ''
-    user: ${cfg.user}
-    gitlab_url: "http+unix://${pathUrlQuote gitlabSocket}"
-    http_settings:
-      self_signed_cert: false
-    repos_path: "${cfg.statePath}/repositories"
-    secret_file: "${cfg.statePath}/config/gitlab_shell_secret"
-    log_file: "${cfg.statePath}/log/gitlab-shell.log"
-    custom_hooks_dir: "${cfg.statePath}/custom_hooks"
-    redis:
-      bin: ${pkgs.redis}/bin/redis-cli
-      host: 127.0.0.1
-      port: 6379
-      database: 0
-      namespace: resque:gitlab
-  '';
+  gitlabShellConfig = {
+    user = cfg.user;
+    gitlab_url = "http+unix://${pathUrlQuote gitlabSocket}";
+    http_settings.self_signed_cert = false;
+    repos_path = "${cfg.statePath}/repositories";
+    secret_file = "${cfg.statePath}/config/gitlab_shell_secret";
+    log_file = "${cfg.statePath}/log/gitlab-shell.log";
+    custom_hooks_dir = "${cfg.statePath}/custom_hooks";
+    redis = {
+      bin = "${pkgs.redis}/bin/redis-cli";
+      host = "127.0.0.1";
+      port = 6379;
+      database = 0;
+      namespace = "resque:gitlab";
+    };
+  };
 
-  redisYml = ''
-    production:
-      url: redis://localhost:6379/
-  '';
+  redisConfig.production.url = "redis://localhost:6379/";
 
-  secretsYml = ''
-    production:
-      secret_key_base: ${cfg.secrets.secret}
-      otp_key_base: ${cfg.secrets.otp}
-      db_key_base: ${cfg.secrets.db}
-      openid_connect_signing_key: ${builtins.toJSON cfg.secrets.jws}
-  '';
+  secretsConfig.production = {
+    secret_key_base = cfg.secrets.secret;
+    otp_key_base = cfg.secrets.otp;
+    db_key_base = cfg.secrets.db;
+    openid_connect_signing_key = cfg.secrets.jws;
+  };
 
   gitlabConfig = {
     # These are the default settings from config/gitlab.example.yml
@@ -115,12 +112,8 @@ let
         upload_pack = true;
         receive_pack = true;
       };
-      workhorse = {
-        secret_file = "${cfg.statePath}/.gitlab_workhorse_secret";
-      };
-      git = {
-        bin_path = "git";
-      };
+      workhorse.secret_file = "${cfg.statePath}/.gitlab_workhorse_secret";
+      git.bin_path = "git";
       monitoring = {
         ip_whitelist = [ "127.0.0.0/8" "::1/128" ];
         sidekiq_exporter = {
@@ -138,7 +131,7 @@ let
     HOME = "${cfg.statePath}/home";
     UNICORN_PATH = "${cfg.statePath}/";
     GITLAB_PATH = "${cfg.packages.gitlab}/share/gitlab/";
-    GITLAB_STATE_PATH = "${cfg.statePath}";
+    GITLAB_STATE_PATH = cfg.statePath;
     GITLAB_UPLOADS_PATH = "${cfg.statePath}/uploads";
     SCHEMA = "${cfg.statePath}/db/schema.rb";
     GITLAB_LOG_PATH = "${cfg.statePath}/log";
@@ -146,13 +139,11 @@ let
     GITLAB_SHELL_CONFIG_PATH = "${cfg.statePath}/shell/config.yml";
     GITLAB_SHELL_SECRET_PATH = "${cfg.statePath}/config/gitlab_shell_secret";
     GITLAB_SHELL_HOOKS_PATH = "${cfg.statePath}/shell/hooks";
-    GITLAB_REDIS_CONFIG_FILE = pkgs.writeText "gitlab-redis.yml" redisYml;
+    GITLAB_REDIS_CONFIG_FILE = pkgs.writeText "redis.yml" (builtins.toJSON redisConfig);
     prometheus_multiproc_dir = "/run/gitlab";
     RAILS_ENV = "production";
   };
 
-  unicornConfig = builtins.readFile ./defaultUnicornConfig.rb;
-
   gitlab-rake = pkgs.stdenv.mkDerivation rec {
     name = "gitlab-rake";
     buildInputs = [ pkgs.makeWrapper ];
@@ -162,7 +153,6 @@ let
       mkdir -p $out/bin
       makeWrapper ${cfg.packages.gitlab.rubyEnv}/bin/rake $out/bin/gitlab-rake \
           ${concatStrings (mapAttrsToList (name: value: "--set ${name} '${value}' ") gitlabEnv)} \
-          --set GITLAB_CONFIG_PATH '${cfg.statePath}/config' \
           --set PATH '${lib.makeBinPath [ pkgs.nodejs pkgs.gzip pkgs.git pkgs.gnutar config.services.postgresql.package pkgs.coreutils pkgs.procps ]}:$PATH' \
           --set RAKEOPT '-f ${cfg.packages.gitlab}/share/gitlab/Rakefile' \
           --run 'cd ${cfg.packages.gitlab}/share/gitlab'
@@ -306,7 +296,6 @@ in {
 
       initialRootPassword = mkOption {
         type = types.str;
-        default = "UseNixOS!";
         description = ''
           Initial password of the root account if this is a new install.
         '';
@@ -461,10 +450,30 @@ in {
       }
     ];
 
+    systemd.tmpfiles.rules = [
+      "d /run/gitlab 0755 ${cfg.user} ${cfg.group} -"
+      "d ${gitlabEnv.HOME} 0750 ${cfg.user} ${cfg.group} -"
+      "d ${cfg.backupPath} 0750 ${cfg.user} ${cfg.group} -"
+      "d ${cfg.statePath}/builds 0750 ${cfg.user} ${cfg.group} -"
+      "d ${cfg.statePath}/config 0750 ${cfg.user} ${cfg.group} -"
+      "d ${cfg.statePath}/db 0750 ${cfg.user} ${cfg.group} -"
+      "d ${cfg.statePath}/log 0750 ${cfg.user} ${cfg.group} -"
+      "d ${cfg.statePath}/repositories 2770 ${cfg.user} ${cfg.group} -"
+      "d ${cfg.statePath}/shell 0750 ${cfg.user} ${cfg.group} -"
+      "d ${cfg.statePath}/tmp/pids 0750 ${cfg.user} ${cfg.group} -"
+      "d ${cfg.statePath}/tmp/sockets 0750 ${cfg.user} ${cfg.group} -"
+      "d ${cfg.statePath}/uploads 0700 ${cfg.user} ${cfg.group} -"
+      "d ${cfg.statePath}/custom_hooks/pre-receive.d 0700 ${cfg.user} ${cfg.group} -"
+      "d ${cfg.statePath}/custom_hooks/post-receive.d 0700 ${cfg.user} ${cfg.group} -"
+      "d ${cfg.statePath}/custom_hooks/update.d 0700 ${cfg.user} ${cfg.group} -"
+      "d ${gitlabConfig.production.shared.path}/artifacts 0750 ${cfg.user} ${cfg.group} -"
+      "d ${gitlabConfig.production.shared.path}/lfs-objects 0750 ${cfg.user} ${cfg.group} -"
+      "d ${gitlabConfig.production.shared.path}/pages 0750 ${cfg.user} ${cfg.group} -"
+    ];
+
     systemd.services.gitlab-sidekiq = {
-      after = [ "network.target" "redis.service" ];
+      after = [ "network.target" "redis.service" "gitlab.service" ];
       wantedBy = [ "multi-user.target" ];
-      partOf = [ "gitlab.service" ];
       environment = gitlabEnv;
       path = with pkgs; [
         config.services.postgresql.package
@@ -486,10 +495,8 @@ in {
     };
 
     systemd.services.gitaly = {
-      after = [ "network.target" "gitlab.service" ];
+      after = [ "network.target" ];
       wantedBy = [ "multi-user.target" ];
-      environment.HOME = gitlabEnv.HOME;
-      environment.GITLAB_SHELL_CONFIG_PATH = gitlabEnv.GITLAB_SHELL_CONFIG_PATH;
       path = with pkgs; [ gitAndTools.git cfg.packages.gitaly.rubyEnv cfg.packages.gitaly.rubyEnv.wrappedRuby ];
       serviceConfig = {
         Type = "simple";
@@ -505,8 +512,6 @@ in {
     systemd.services.gitlab-workhorse = {
       after = [ "network.target" ];
       wantedBy = [ "multi-user.target" ];
-      environment.HOME = gitlabEnv.HOME;
-      environment.GITLAB_SHELL_CONFIG_PATH = gitlabEnv.GITLAB_SHELL_CONFIG_PATH;
       path = with pkgs; [
         gitAndTools.git
         gnutar
@@ -514,10 +519,6 @@ in {
         openssh
         gitlab-workhorse
       ];
-      preStart = ''
-        mkdir -p /run/gitlab
-        chown ${cfg.user}:${cfg.group} /run/gitlab
-      '';
       serviceConfig = {
         PermissionsStartOnly = true; # preStart must be run as root
         Type = "simple";
@@ -538,7 +539,7 @@ in {
     };
 
     systemd.services.gitlab = {
-      after = [ "network.target" "postgresql.service" "redis.service" ];
+      after = [ "gitlab-workhorse.service" "gitaly.service" "network.target" "postgresql.service" "redis.service" ];
       requires = [ "gitlab-sidekiq.service" ];
       wantedBy = [ "multi-user.target" ];
       environment = gitlabEnv;
@@ -551,102 +552,75 @@ in {
         gnupg
       ];
       preStart = ''
-        mkdir -p ${cfg.backupPath}
-        mkdir -p ${cfg.statePath}/builds
-        mkdir -p ${cfg.statePath}/repositories
-        mkdir -p ${gitlabConfig.production.shared.path}/artifacts
-        mkdir -p ${gitlabConfig.production.shared.path}/lfs-objects
-        mkdir -p ${gitlabConfig.production.shared.path}/pages
-        mkdir -p ${cfg.statePath}/log
-        mkdir -p ${cfg.statePath}/tmp/pids
-        mkdir -p ${cfg.statePath}/tmp/sockets
-        mkdir -p ${cfg.statePath}/shell
-        mkdir -p ${cfg.statePath}/db
-        mkdir -p ${cfg.statePath}/uploads
-        mkdir -p ${cfg.statePath}/custom_hooks/pre-receive.d
-        mkdir -p ${cfg.statePath}/custom_hooks/post-receive.d
-        mkdir -p ${cfg.statePath}/custom_hooks/update.d
-
-        rm -rf ${cfg.statePath}/config ${cfg.statePath}/shell/hooks
-        mkdir -p ${cfg.statePath}/config
-
         ${pkgs.openssl}/bin/openssl rand -hex 32 > ${cfg.statePath}/config/gitlab_shell_secret
 
-        mkdir -p /run/gitlab
-        mkdir -p ${cfg.statePath}/log
-        [ -d /run/gitlab/log ] || ln -sf ${cfg.statePath}/log /run/gitlab/log
-        [ -d /run/gitlab/tmp ] || ln -sf ${cfg.statePath}/tmp /run/gitlab/tmp
-        [ -d /run/gitlab/uploads ] || ln -sf ${cfg.statePath}/uploads /run/gitlab/uploads
-        ln -sf $GITLAB_SHELL_CONFIG_PATH /run/gitlab/shell-config.yml
-        chown -R ${cfg.user}:${cfg.group} /run/gitlab
-
-        # Prepare home directory
-        mkdir -p ${gitlabEnv.HOME}/.ssh
-        touch ${gitlabEnv.HOME}/.ssh/authorized_keys
-        chown -R ${cfg.user}:${cfg.group} ${gitlabEnv.HOME}/
-
         cp -rf ${cfg.packages.gitlab}/share/gitlab/db/* ${cfg.statePath}/db
         cp -rf ${cfg.packages.gitlab}/share/gitlab/config.dist/* ${cfg.statePath}/config
-        ${optionalString cfg.smtp.enable ''
-          ln -sf ${smtpSettings} ${cfg.statePath}/config/initializers/smtp_settings.rb
-        ''}
-        ln -sf ${cfg.statePath}/config /run/gitlab/config
         if [ -e ${cfg.statePath}/lib ]; then
           rm ${cfg.statePath}/lib
         fi
-        ln -sf ${pkgs.gitlab}/share/gitlab/lib ${cfg.statePath}/lib
+
+        ln -sf ${cfg.packages.gitlab}/share/gitlab/lib ${cfg.statePath}/lib
+        [ -L /run/gitlab/config ] || ln -sf ${cfg.statePath}/config /run/gitlab/config
+        [ -L /run/gitlab/log ] || ln -sf ${cfg.statePath}/log /run/gitlab/log
+        [ -L /run/gitlab/tmp ] || ln -sf ${cfg.statePath}/tmp /run/gitlab/tmp
+        [ -L /run/gitlab/uploads ] || ln -sf ${cfg.statePath}/uploads /run/gitlab/uploads
+        ${optionalString cfg.smtp.enable ''
+          ln -sf ${smtpSettings} ${cfg.statePath}/config/initializers/smtp_settings.rb
+        ''}
         cp ${cfg.packages.gitlab}/share/gitlab/VERSION ${cfg.statePath}/VERSION
 
         # JSON is a subset of YAML
-        ln -fs ${pkgs.writeText "gitlab.yml" (builtins.toJSON gitlabConfig)} ${cfg.statePath}/config/gitlab.yml
-        ln -fs ${pkgs.writeText "database.yml" databaseYml} ${cfg.statePath}/config/database.yml
-        ln -fs ${pkgs.writeText "secrets.yml" secretsYml} ${cfg.statePath}/config/secrets.yml
-        ln -fs ${pkgs.writeText "unicorn.rb" unicornConfig} ${cfg.statePath}/config/unicorn.rb
+        ln -sf ${pkgs.writeText "gitlab.yml" (builtins.toJSON gitlabConfig)} ${cfg.statePath}/config/gitlab.yml
+        ln -sf ${pkgs.writeText "database.yml" (builtins.toJSON databaseConfig)} ${cfg.statePath}/config/database.yml
+        ln -sf ${pkgs.writeText "secrets.yml" (builtins.toJSON secretsConfig)} ${cfg.statePath}/config/secrets.yml
+        ln -sf ${./defaultUnicornConfig.rb} ${cfg.statePath}/config/unicorn.rb
+
+        # Install the shell required to push repositories
+        ln -sf ${pkgs.writeText "config.yml" (builtins.toJSON gitlabShellConfig)} /run/gitlab/shell-config.yml
+        [ -L ${cfg.statePath}/shell/hooks ] ||  ln -sf ${cfg.packages.gitlab-shell}/hooks ${cfg.statePath}/shell/hooks
+        ${cfg.packages.gitlab-shell}/bin/install
 
         chown -R ${cfg.user}:${cfg.group} ${cfg.statePath}/
         chmod -R ug+rwX,o-rwx+X ${cfg.statePath}/
+        chown -R ${cfg.user}:${cfg.group} /run/gitlab
 
-        # Install the shell required to push repositories
-        ln -fs ${pkgs.writeText "config.yml" gitlabShellYml} "$GITLAB_SHELL_CONFIG_PATH"
-        ln -fs ${cfg.packages.gitlab-shell}/hooks "$GITLAB_SHELL_HOOKS_PATH"
-        ${cfg.packages.gitlab-shell}/bin/install
-
-        if [ "${cfg.databaseHost}" = "127.0.0.1" ]; then
-          if ! test -e "${cfg.statePath}/db-created"; then
+        if ! test -e "${cfg.statePath}/db-created"; then
+          if [ "${cfg.databaseHost}" = "127.0.0.1" ]; then
             ${pkgs.sudo}/bin/sudo -u ${pgSuperUser} psql postgres -c "CREATE ROLE ${cfg.databaseUsername} WITH LOGIN NOCREATEDB NOCREATEROLE ENCRYPTED PASSWORD '${cfg.databasePassword}'"
             ${pkgs.sudo}/bin/sudo -u ${pgSuperUser} ${config.services.postgresql.package}/bin/createdb --owner ${cfg.databaseUsername} ${cfg.databaseName}
-            touch "${cfg.statePath}/db-created"
+
+            # enable required pg_trgm extension for gitlab
+            ${pkgs.sudo}/bin/sudo -u ${pgSuperUser} psql ${cfg.databaseName} -c "CREATE EXTENSION IF NOT EXISTS pg_trgm"
           fi
 
-          # enable required pg_trgm extension for gitlab
-          ${pkgs.sudo}/bin/sudo -u ${pgSuperUser} psql ${cfg.databaseName} -c "CREATE EXTENSION IF NOT EXISTS pg_trgm"
+          ${pkgs.sudo}/bin/sudo -u ${cfg.user} -H ${gitlab-rake}/bin/gitlab-rake db:schema:load
+
+          touch "${cfg.statePath}/db-created"
         fi
 
         # Always do the db migrations just to be sure the database is up-to-date
-        ${gitlab-rake}/bin/gitlab-rake db:migrate RAILS_ENV=production
+        ${pkgs.sudo}/bin/sudo -u ${cfg.user} -H ${gitlab-rake}/bin/gitlab-rake db:migrate
 
-        # The gitlab:setup task is horribly broken somehow, the db:migrate
-        # task above and the db:seed_fu below will do the same for setting
-        # up the initial database
         if ! test -e "${cfg.statePath}/db-seeded"; then
-          ${gitlab-rake}/bin/gitlab-rake db:seed_fu RAILS_ENV=production \
+          ${pkgs.sudo}/bin/sudo -u ${cfg.user} ${gitlab-rake}/bin/gitlab-rake db:seed_fu \
             GITLAB_ROOT_PASSWORD='${cfg.initialRootPassword}' GITLAB_ROOT_EMAIL='${cfg.initialRootEmail}'
           touch "${cfg.statePath}/db-seeded"
         fi
 
         # The gitlab:shell:setup regenerates the authorized_keys file so that
         # the store path to the gitlab-shell in it gets updated
-        ${pkgs.sudo}/bin/sudo -u ${cfg.user} force=yes ${gitlab-rake}/bin/gitlab-rake gitlab:shell:setup RAILS_ENV=production
+        ${pkgs.sudo}/bin/sudo -u ${cfg.user} -H force=yes ${gitlab-rake}/bin/gitlab-rake gitlab:shell:setup
 
         # The gitlab:shell:create_hooks task seems broken for fixing links
         # so we instead delete all the hooks and create them anew
         rm -f ${cfg.statePath}/repositories/**/*.git/hooks
-        ${gitlab-rake}/bin/gitlab-rake gitlab:shell:create_hooks RAILS_ENV=production
+        ${pkgs.sudo}/bin/sudo -u ${cfg.user} -H ${gitlab-rake}/bin/gitlab-rake gitlab:shell:create_hooks
+
+        ${pkgs.sudo}/bin/sudo -u ${cfg.user} -H ${pkgs.git}/bin/git config --global core.autocrlf "input"
 
         # Change permissions in the last step because some of the
         # intermediary scripts like to create directories as root.
-        chown -R ${cfg.user}:${cfg.group} ${cfg.statePath}
-        chmod -R ug+rwX,o-rwx+X ${cfg.statePath}
         chmod -R u+rwX,go-rwx+X ${gitlabEnv.HOME}
         chmod -R ug+rwX,o-rwx ${cfg.statePath}/repositories
         chmod -R ug-s ${cfg.statePath}/repositories
diff --git a/nixos/release.nix b/nixos/release.nix
index 51505d6aab9d..96d2e11fff3c 100644
--- a/nixos/release.nix
+++ b/nixos/release.nix
@@ -300,7 +300,7 @@ in rec {
   tests.fsck = callTest tests/fsck.nix {};
   tests.fwupd = callTest tests/fwupd.nix {};
   tests.gdk-pixbuf = callTest tests/gdk-pixbuf.nix {};
-  #tests.gitlab = callTest tests/gitlab.nix {};
+  tests.gitlab = callTest tests/gitlab.nix {};
   tests.gitolite = callTest tests/gitolite.nix {};
   tests.gjs = callTest tests/gjs.nix {};
   tests.gocd-agent = callTest tests/gocd-agent.nix {};
diff --git a/nixos/tests/gitlab.nix b/nixos/tests/gitlab.nix
index 3af2cbcd0988..53675c375e31 100644
--- a/nixos/tests/gitlab.nix
+++ b/nixos/tests/gitlab.nix
@@ -1,14 +1,18 @@
 # This test runs gitlab and checks if it works
 
-import ./make-test.nix ({ pkgs, ...} : {
+import ./make-test.nix ({ pkgs, lib, ...} : with lib; {
   name = "gitlab";
   meta = with pkgs.stdenv.lib.maintainers; {
-    maintainers = [ domenkozar offline ];
+    maintainers = [ globin ];
   };
 
   nodes = {
     gitlab = { ... }: {
-      virtualisation.memorySize = 768;
+      virtualisation.memorySize = 4096;
+      systemd.services.gitlab.serviceConfig.Restart = mkForce "no";
+      systemd.services.gitlab-workhorse.serviceConfig.Restart = mkForce "no";
+      systemd.services.gitaly.serviceConfig.Restart = mkForce "no";
+      systemd.services.gitlab-sidekiq.serviceConfig.Restart = mkForce "no";
 
       services.nginx = {
         enable = true;
@@ -19,10 +23,10 @@ import ./make-test.nix ({ pkgs, ...} : {
         };
       };
 
-      systemd.services.gitlab.serviceConfig.TimeoutStartSec = "10min";
       services.gitlab = {
         enable = true;
         databasePassword = "dbPassword";
+        initialRootPassword = "notproduction";
         secrets = {
           secret = "secret";
           otp = "otpsecret";
@@ -65,8 +69,12 @@ import ./make-test.nix ({ pkgs, ...} : {
 
   testScript = ''
     $gitlab->start();
+    $gitlab->waitForUnit("gitaly.service");
+    $gitlab->waitForUnit("gitlab-workhorse.service");
     $gitlab->waitForUnit("gitlab.service");
     $gitlab->waitForUnit("gitlab-sidekiq.service");
-    $gitlab->waitUntilSucceeds("curl http://localhost:80/users/sign_in");
+    $gitlab->waitForFile("/var/gitlab/state/tmp/sockets/gitlab.socket");
+    $gitlab->waitUntilSucceeds("curl -sSf http://localhost/users/sign_in");
+    $gitlab->succeed("${pkgs.sudo}/bin/sudo -u gitlab -H gitlab-rake gitlab:check 1>&2")
   '';
 })
diff --git a/pkgs/applications/version-management/gitlab/default.nix b/pkgs/applications/version-management/gitlab/default.nix
index ace0df5efdfd..933db40cfc0e 100644
--- a/pkgs/applications/version-management/gitlab/default.nix
+++ b/pkgs/applications/version-management/gitlab/default.nix
@@ -63,17 +63,7 @@ stdenv.mkDerivation rec {
         --replace "ps -U" "${procps}/bin/ps -U"
 
     sed -i '/ask_to_continue/d' lib/tasks/gitlab/two_factor.rake
-
-    # required for some gems:
-    cat > config/database.yml <<EOF
-      production:
-        adapter: <%= ENV["GITLAB_DATABASE_ADAPTER"] || sqlite %>
-        database: gitlab
-        host: <%= ENV["GITLAB_DATABASE_HOST"] || "127.0.0.1" %>
-        password: <%= ENV["GITLAB_DATABASE_PASSWORD"] || "blerg" %>
-        username: gitlab
-        encoding: utf8
-    EOF
+    sed -ri -e '/log_level/a config.logger = Logger.new(STDERR)' config/environments/production.rb
   '';
 
   buildPhase = ''

From 25e68e30487548091e6936c23d13ea53de3d2fc9 Mon Sep 17 00:00:00 2001
From: Averell Dalton <averell+nixpkgs@rxd4.com>
Date: Fri, 2 Nov 2018 23:02:04 +0100
Subject: [PATCH 0352/1129] r-ps: patchShebangs in ./configure to fix build

---
 pkgs/development/r-modules/default.nix | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/pkgs/development/r-modules/default.nix b/pkgs/development/r-modules/default.nix
index f40c0fcb5592..428d6c60546e 100644
--- a/pkgs/development/r-modules/default.nix
+++ b/pkgs/development/r-modules/default.nix
@@ -942,6 +942,10 @@ let
       PKGCONFIG_LIBS = "-Wl,-rpath,${pkgs.openssl.out}/lib -L${pkgs.openssl.out}/lib -L${pkgs.cyrus_sasl.out}/lib -L${pkgs.zlib.out}/lib -lssl -lcrypto -lsasl2 -lz";
     });
 
+    ps = old.ps.overrideDerivation (attrs: {
+      preConfigure = "patchShebangs configure";
+    });
+
     rlang = old.rlang.overrideDerivation (attrs: {
       preConfigure = "patchShebangs configure";
     });

From a562c5fc751633e40c23eddebfca4f162411878b Mon Sep 17 00:00:00 2001
From: Robert Helgesson <robert@rycee.net>
Date: Fri, 2 Nov 2018 22:55:26 +0100
Subject: [PATCH 0353/1129] josm: 14289 -> 14382

---
 pkgs/applications/misc/josm/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/josm/default.nix b/pkgs/applications/misc/josm/default.nix
index 808ff2d6f610..f529fa395d93 100644
--- a/pkgs/applications/misc/josm/default.nix
+++ b/pkgs/applications/misc/josm/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "josm-${version}";
-  version = "14289";
+  version = "14382";
 
   src = fetchurl {
     url = "https://josm.openstreetmap.de/download/josm-snapshot-${version}.jar";
-    sha256 = "102dph3479qskzf72cpb9139pq9ifka6pzna1c6s5rs2il6mfvsb";
+    sha256 = "1a2nx9jr1fvw95gdvl9kj3z0cs6ndafm0k4l0lwfx9p9qn4lgzjg";
   };
 
   buildInputs = [ jdk11 makeWrapper ];

From 811509e5a3b7d7328ecafa2503205fef43c39cb4 Mon Sep 17 00:00:00 2001
From: Robert Helgesson <robert@rycee.net>
Date: Fri, 2 Nov 2018 22:55:45 +0100
Subject: [PATCH 0354/1129] abcmidi: 2018.06.23 -> 2018.10.25

---
 pkgs/tools/audio/abcmidi/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/audio/abcmidi/default.nix b/pkgs/tools/audio/abcmidi/default.nix
index 2d54c182349c..1a215d4ca83b 100644
--- a/pkgs/tools/audio/abcmidi/default.nix
+++ b/pkgs/tools/audio/abcmidi/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "abcMIDI-${version}";
-  version = "2018.06.23";
+  version = "2018.10.25";
 
   src = fetchzip {
     url = "https://ifdo.ca/~seymour/runabc/${name}.zip";
-    sha256 = "0487dlw9v4ayb929w8bk71fs4nbcs1liyk59g6sfr4yn6dx2sl2d";
+    sha256 = "0q7yrds1hpis1821mdsz31c2cvn7hs73a10fi1mrk1v4hqql8vv3";
   };
 
   # There is also a file called "makefile" which seems to be preferred by the standard build phase

From 2db8372554d190c6fd00b990152eef196b740d9a Mon Sep 17 00:00:00 2001
From: Robert Helgesson <robert@rycee.net>
Date: Fri, 2 Nov 2018 23:10:17 +0100
Subject: [PATCH 0355/1129] pythonPackages.PyICU: 2.0.3 -> 2.2

---
 pkgs/top-level/python-packages.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 49bc322d4798..381cdea938e2 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -4454,21 +4454,21 @@ in {
   };
 
   PyICU = buildPythonPackage rec {
-    name = "PyICU-2.0.3";
+    name = "PyICU-2.2";
 
     src = pkgs.fetchurl {
       url = "mirror://pypi/P/PyICU/${name}.tar.gz";
-      sha256 = "0pzss3l0b0vcsyr7wlqdd6pkcqldspajfgd9k2iijf6r152d2ln4";
+      sha256 = "0wq9y5fi1ighgf5aws9nr87vi1w44p7q1k83rx2y3qj5d2xyhspa";
     };
 
     patches = [
       (pkgs.fetchpatch {
-        url = https://sources.debian.org/data/main/p/pyicu/2.0.3-1/debian/patches/icu_test.patch;
+        url = https://sources.debian.org/data/main/p/pyicu/2.2-1/debian/patches/icu_test.patch;
         sha256 = "1iavdkyqixm9i753svl17barla93b7jzgkw09dn3hnggamx7zwx9";
       })
     ];
 
-    buildInputs = [ pkgs.icu self.pytest ];
+    buildInputs = [ pkgs.icu60 self.pytest ];
 
     propagatedBuildInputs = [ self.six ];
 

From 7bade1b0f3ab78c46d265d279b738c4b20037a4a Mon Sep 17 00:00:00 2001
From: Robert Helgesson <robert@rycee.net>
Date: Fri, 2 Nov 2018 23:23:33 +0100
Subject: [PATCH 0356/1129] overpass: 3.0.2 -> 3.0.3

---
 pkgs/data/fonts/overpass/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/data/fonts/overpass/default.nix b/pkgs/data/fonts/overpass/default.nix
index 8bb4e82747ad..c39bb945f48d 100644
--- a/pkgs/data/fonts/overpass/default.nix
+++ b/pkgs/data/fonts/overpass/default.nix
@@ -1,7 +1,7 @@
 { stdenv, fetchzip }:
 
 let
-  version = "3.0.2";
+  version = "3.0.3";
 in fetchzip rec {
   name = "overpass-${version}";
 
@@ -12,7 +12,7 @@ in fetchzip rec {
     mkdir -p $out/share/doc/${name}    ; unzip -j $downloadedFile \*.md  -d $out/share/doc/${name}
   '';
 
-  sha256 = "05zv3zcfc9a707sn3hhf46b126k19d9byzvi5ixp5y2548vjvl6s";
+  sha256 = "1m6p7rrlyqikjvypp4698sn0lp3a4z0z5al4swblfhg8qaxzv5pg";
 
   meta = with stdenv.lib; {
     homepage = http://overpassfont.org/;

From 6b9e570bc2a04e9184ee40edc90426f9ccb5ed65 Mon Sep 17 00:00:00 2001
From: Robert Helgesson <robert@rycee.net>
Date: Fri, 2 Nov 2018 23:29:29 +0100
Subject: [PATCH 0357/1129] open-dyslexic: 2014-11-11 -> 2016-06-23

---
 pkgs/data/fonts/open-dyslexic/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/data/fonts/open-dyslexic/default.nix b/pkgs/data/fonts/open-dyslexic/default.nix
index 40a9be3282e0..7fa57463ece3 100644
--- a/pkgs/data/fonts/open-dyslexic/default.nix
+++ b/pkgs/data/fonts/open-dyslexic/default.nix
@@ -1,11 +1,11 @@
 {stdenv, fetchzip}:
 
 let
-  version = "2014-11-11";
+  version = "2016-06-23";
 in fetchzip {
   name = "open-dyslexic-${version}";
 
-  url = https://github.com/antijingoist/open-dyslexic/archive/f4b5ba89018b44d633608907e15f93fb3fabbabc.zip;
+  url = https://github.com/antijingoist/open-dyslexic/archive/20160623-Stable.zip;
 
   postFetch = ''
     mkdir -p $out/share/{doc,fonts}
@@ -13,7 +13,7 @@ in fetchzip {
     unzip -j $downloadedFile \*/README.md -d $out/share/doc/open-dyslexic
   '';
 
-  sha256 = "045xc7kj56q4ygnjppm8f8fwqqvf21x1piabm4nh8hwgly42a3w2";
+  sha256 = "1vl8z5rknh2hpr2f0v4b2qgs5kclx5pzyk8al7243k5db82a2cyi";
 
   meta = with stdenv.lib; {
     homepage = https://opendyslexic.org/;

From 1851203c7b16cb1d61e824bb83cccda28817f296 Mon Sep 17 00:00:00 2001
From: Robert Helgesson <robert@rycee.net>
Date: Fri, 2 Nov 2018 23:38:37 +0100
Subject: [PATCH 0358/1129] comfortaa: 2.004 -> 3.001

---
 pkgs/data/fonts/comfortaa/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/data/fonts/comfortaa/default.nix b/pkgs/data/fonts/comfortaa/default.nix
index 0dd4f727ad25..f7ec6e8b8c87 100644
--- a/pkgs/data/fonts/comfortaa/default.nix
+++ b/pkgs/data/fonts/comfortaa/default.nix
@@ -1,18 +1,18 @@
 {stdenv, fetchzip}:
 
 let
-  version = "2.004";
+  version = "3.001";
 in fetchzip rec {
   name = "comfortaa-${version}";
 
-  url = "http://openfontlibrary.org/assets/downloads/comfortaa/38318a69b56162733bf82bc0170b7521/comfortaa.zip";
+  url = "https://orig00.deviantart.net/40a3/f/2017/093/d/4/comfortaa___font_by_aajohan-d1qr019.zip";
   postFetch = ''
     mkdir -p $out/share/fonts $out/share/doc
     unzip -l $downloadedFile
     unzip -j $downloadedFile \*.ttf                        -d $out/share/fonts/truetype
     unzip -j $downloadedFile \*/FONTLOG.txt \*/donate.html -d $out/share/doc/${name}
   '';
-  sha256 = "1gnscf3kw9p5gbc5594a22cc6nmiir9mhp1nl3mkbzd4v1jfbh2h";
+  sha256 = "0z7xr0cnn6ghwivrm5b5awq9bzhnay3y99qq6dkdgfkfdsaz0n9h";
 
   meta = with stdenv.lib; {
     homepage = http://aajohan.deviantart.com/art/Comfortaa-font-105395949;

From 411c665f336d6b8a44f27170abd2c0efc19d0c4d Mon Sep 17 00:00:00 2001
From: Kevin Quick <kquick@galois.com>
Date: Fri, 2 Nov 2018 15:49:09 -0700
Subject: [PATCH 0359/1129] yices: 2.6.0 -> 2.6.1

---
 pkgs/applications/science/logic/yices/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/science/logic/yices/default.nix b/pkgs/applications/science/logic/yices/default.nix
index 3121a83e5b98..0ab08db67465 100644
--- a/pkgs/applications/science/logic/yices/default.nix
+++ b/pkgs/applications/science/logic/yices/default.nix
@@ -2,12 +2,12 @@
 
 stdenv.mkDerivation rec {
   name    = "yices-${version}";
-  version = "2.6.0";
+  version = "2.6.1";
 
   src = fetchurl {
     url = "https://github.com/SRI-CSL/yices2/archive/Yices-${version}.tar.gz";
     name = "${name}-src.tar.gz";
-    sha256 = "10ikq7ib8jhx7hlxfm6mp5qg6r8dflqs8242q5zaicn80qixpm12";
+    sha256 = "14xvflv14qn8ssm8rklvckp6l1q94vn49qz2snz73j40nwzshaww";
   };
 
   nativeBuildInputs = [ autoreconfHook ];

From 79dace1b308667722543b16291b58628f8538f18 Mon Sep 17 00:00:00 2001
From: Eric Wolf <ericwolf42@gmail.com>
Date: Sat, 3 Nov 2018 00:11:11 +0100
Subject: [PATCH 0360/1129] haskellPackages.sdl2: test-suite needs x server, so
 deactivate it

---
 pkgs/development/haskell-modules/configuration-common.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix
index 2c9d9d307ae3..56ffd6ee54ee 100644
--- a/pkgs/development/haskell-modules/configuration-common.nix
+++ b/pkgs/development/haskell-modules/configuration-common.nix
@@ -370,6 +370,7 @@ self: super: {
   safecopy = dontCheck super.safecopy;
   sai-shape-syb = dontCheck super.sai-shape-syb;
   scp-streams = dontCheck super.scp-streams;
+  sdl2 = dontCheck super.sdl2; # the test suite needs an x server
   sdl2-ttf = dontCheck super.sdl2-ttf; # as of version 0.2.1, the test suite requires user intervention
   separated = dontCheck super.separated;
   shadowsocks = dontCheck super.shadowsocks;

From de8a3e3125baddc22ef0472ca941b49acf5ca8fd Mon Sep 17 00:00:00 2001
From: Thilo Uttendorfer <tlo@sengaya.de>
Date: Fri, 2 Nov 2018 23:16:07 +0100
Subject: [PATCH 0361/1129] ansible_2_5: 2.5.2 -> 2.5.11

---
 pkgs/tools/admin/ansible/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/admin/ansible/default.nix b/pkgs/tools/admin/ansible/default.nix
index 2b6877cb25f5..b3abd230b74a 100644
--- a/pkgs/tools/admin/ansible/default.nix
+++ b/pkgs/tools/admin/ansible/default.nix
@@ -53,8 +53,8 @@ in rec {
   };
 
   ansible_2_5 = generic {
-    version = "2.5.2";
-    sha256  = "1r9sq30xz3jrvx6yqssj5wmkml1f75rx1amd7g89f3ryngrq6m59";
+    version = "2.5.11";
+    sha256  = "07rhgkl3a2ba59rqh9pyz1p661gc389shlwa2sw1m6wwifg4lm24";
   };
 
   ansible_2_6 = generic {

From e63509a651d1ecac2ab712cbc9b7e7c00ed96cbd Mon Sep 17 00:00:00 2001
From: Thilo Uttendorfer <tlo@sengaya.de>
Date: Fri, 2 Nov 2018 23:18:57 +0100
Subject: [PATCH 0362/1129] ansible_2_6: 2.6.2 -> 2.6.7

---
 pkgs/tools/admin/ansible/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/admin/ansible/default.nix b/pkgs/tools/admin/ansible/default.nix
index b3abd230b74a..9ed4b36f20b8 100644
--- a/pkgs/tools/admin/ansible/default.nix
+++ b/pkgs/tools/admin/ansible/default.nix
@@ -58,8 +58,8 @@ in rec {
   };
 
   ansible_2_6 = generic {
-    version = "2.6.2";
-    sha256  = "1y5gd9h641p6pphwd7j99yyqglyj23rkmid7wgzk62611754qzkl";
+    version = "2.6.7";
+    sha256  = "10pakw9k9wd3cy1qk3ah2253ph7c7h3qzpal4k0s5lschzgy2fh0";
   };
 
   ansible2 = ansible_2_6;

From c0d30e5f034cbc72dae15a8986b0a9d70fbe7540 Mon Sep 17 00:00:00 2001
From: Thilo Uttendorfer <tlo@sengaya.de>
Date: Fri, 2 Nov 2018 23:21:53 +0100
Subject: [PATCH 0363/1129] ansible_2_7: init at 2.7.1

---
 pkgs/tools/admin/ansible/default.nix | 7 ++++++-
 pkgs/top-level/all-packages.nix      | 1 +
 2 files changed, 7 insertions(+), 1 deletion(-)

diff --git a/pkgs/tools/admin/ansible/default.nix b/pkgs/tools/admin/ansible/default.nix
index 9ed4b36f20b8..c86a108fc425 100644
--- a/pkgs/tools/admin/ansible/default.nix
+++ b/pkgs/tools/admin/ansible/default.nix
@@ -62,6 +62,11 @@ in rec {
     sha256  = "10pakw9k9wd3cy1qk3ah2253ph7c7h3qzpal4k0s5lschzgy2fh0";
   };
 
-  ansible2 = ansible_2_6;
+  ansible_2_7 = generic {
+    version = "2.7.1";
+    sha256  = "0fg95x2nr3j4rwnlyd2n03h91xx9fssi34c32356vk3z6ir395g7";
+  };
+
+  ansible2 = ansible_2_7;
   ansible  = ansible2;
 }
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 62cef2d50689..aa2ed6d2c592 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -8059,6 +8059,7 @@ with pkgs;
     ansible_2_4
     ansible_2_5
     ansible_2_6
+    ansible_2_7
     ansible2
     ansible;
 

From a3739a908ce4c2e6dfe1fe08d537867825d84d5e Mon Sep 17 00:00:00 2001
From: Thilo Uttendorfer <tlo@sengaya.de>
Date: Fri, 2 Nov 2018 23:46:13 +0100
Subject: [PATCH 0364/1129] ansible-lint: fix install tests

---
 pkgs/development/tools/ansible-lint/default.nix | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/pkgs/development/tools/ansible-lint/default.nix b/pkgs/development/tools/ansible-lint/default.nix
index c460662f4f88..5433725b3050 100644
--- a/pkgs/development/tools/ansible-lint/default.nix
+++ b/pkgs/development/tools/ansible-lint/default.nix
@@ -19,6 +19,10 @@ pythonPackages.buildPythonPackage rec {
     patchShebangs bin/ansible-lint
   '';
 
+   preBuild = ''
+     export HOME="$TMP"
+   '';
+
   checkPhase = ''
     nosetests test
   '';

From 78dbe695436200b0d6ffd5f85f372411700afb6c Mon Sep 17 00:00:00 2001
From: Raphael Borun Das Gupta <git@raphael.dasgupta.ch>
Date: Sun, 28 Oct 2018 16:37:49 +0100
Subject: [PATCH 0365/1129] libosmium: init at 2.14.2

---
 .../libraries/libosmium/default.nix           | 24 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 26 insertions(+)
 create mode 100644 pkgs/development/libraries/libosmium/default.nix

diff --git a/pkgs/development/libraries/libosmium/default.nix b/pkgs/development/libraries/libosmium/default.nix
new file mode 100644
index 000000000000..e889a3cb275c
--- /dev/null
+++ b/pkgs/development/libraries/libosmium/default.nix
@@ -0,0 +1,24 @@
+{ stdenv, fetchFromGitHub, cmake, protozero, expat, zlib, bzip2, boost }:
+
+stdenv.mkDerivation rec {
+  name = "libosmium-${version}";
+  version = "2.14.2";
+
+  src = fetchFromGitHub {
+    owner = "osmcode";
+    repo = "libosmium";
+    rev = "v${version}";
+    sha256 = "123ri1l0a2b9fljgpwsl7z2w4i3kmgxz79d4ns9z4mwbp8sw0250";
+  };
+
+  nativeBuildInputs = [ cmake ];
+  buildInputs = [ protozero zlib bzip2 expat boost ];
+
+
+  meta = with stdenv.lib; {
+    description = "Fast and flexible C++ library for working with OpenStreetMap data";
+    homepage = "https://osmcode.org/libosmium/";
+    license = licenses.boost;
+    maintainers = with maintainers; [ das-g ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 01e40a995b37..f2d735497e36 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -10976,6 +10976,8 @@ with pkgs;
 
   libosip_3 = callPackage ../development/libraries/osip/3.nix {};
 
+  libosmium = callPackage ../development/libraries/libosmium { };
+
   libosmocore = callPackage ../applications/misc/libosmocore { };
 
   libosmpbf = callPackage ../development/libraries/libosmpbf {};

From 295cae7f1c8a609116acb0637178b829e116500b Mon Sep 17 00:00:00 2001
From: Raphael Borun Das Gupta <git@raphael.dasgupta.ch>
Date: Sun, 28 Oct 2018 18:09:25 +0100
Subject: [PATCH 0366/1129] osmium-tool: init at 1.9.1

---
 .../applications/misc/osmium-tool/default.nix | 23 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 25 insertions(+)
 create mode 100644 pkgs/applications/misc/osmium-tool/default.nix

diff --git a/pkgs/applications/misc/osmium-tool/default.nix b/pkgs/applications/misc/osmium-tool/default.nix
new file mode 100644
index 000000000000..36e58cf5070b
--- /dev/null
+++ b/pkgs/applications/misc/osmium-tool/default.nix
@@ -0,0 +1,23 @@
+{ stdenv, fetchFromGitHub, cmake, libosmium, protozero, boost, bzip2, zlib, expat }:
+
+stdenv.mkDerivation rec {
+  name = "osmium-tool-${version}";
+  version = "1.9.1";
+
+  src = fetchFromGitHub {
+    owner = "osmcode";
+    repo = "osmium-tool";
+    rev = "v${version}";
+    sha256 = "1cwabjbrdpqbi2gl7448sgniiwwa73avi9l6pnvh4r0jia2wi5wk";
+  };
+
+  nativeBuildInputs = [ cmake ];
+  buildInputs = [ libosmium protozero boost bzip2 zlib expat ];
+
+  meta = with stdenv.lib; {
+    description = "Multipurpose command line tool for working with OpenStreetMap data based on the Osmium library";
+    homepage = "https://osmcode.org/osmium-tool/";
+    license = with licenses; [ gpl3 mit bsd3 ];
+    maintainers = with maintainers; [ das-g ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index f2d735497e36..031104880162 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -18267,6 +18267,8 @@ with pkgs;
 
   osmctools = callPackage ../applications/misc/osmctools { };
 
+  osmium-tool = callPackage ../applications/misc/osmium-tool { };
+
   owamp = callPackage ../applications/networking/owamp { };
 
   vivaldi = callPackage ../applications/networking/browsers/vivaldi {};

From 29b4ac8e41b339afdeced9e69224773d0a109da9 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 2 Nov 2018 18:42:58 -0500
Subject: [PATCH 0367/1129] release-corss.nix: fix ppc-embedded name

s/powerpc-embedded/ppc-embedded
---
 pkgs/top-level/release-cross.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/top-level/release-cross.nix b/pkgs/top-level/release-cross.nix
index 456bacb106b1..6cf0cb57be4f 100644
--- a/pkgs/top-level/release-cross.nix
+++ b/pkgs/top-level/release-cross.nix
@@ -142,7 +142,7 @@ in
 
   avr = mapTestOnCross lib.systems.examples.avr embedded;
   arm-embedded = mapTestOnCross lib.systems.examples.arm-embedded embedded;
-  powerpc-embedded = mapTestOnCross lib.systems.examples.powerpc-embedded embedded;
+  powerpc-embedded = mapTestOnCross lib.systems.examples.ppc-embedded embedded;
   aarch64-embedded = mapTestOnCross lib.systems.examples.aarch64-embedded embedded;
   i686-embedded = mapTestOnCross lib.systems.examples.i686-embedded embedded;
   x86_64-embedded = mapTestOnCross lib.systems.examples.x86_64-embedded embedded;

From 13effc913dd016ef5b829fbdea1437f32fa43709 Mon Sep 17 00:00:00 2001
From: Arian van Putten <arian.vanputten@gmail.com>
Date: Sat, 3 Nov 2018 00:50:35 +0100
Subject: [PATCH 0368/1129] terraform-providers: Bump all releases (#49582)

Does what it says on the tin. Auto-generated.
---
 .../cluster/terraform-providers/data.nix      | 132 +++++++++++-------
 1 file changed, 80 insertions(+), 52 deletions(-)

diff --git a/pkgs/applications/networking/cluster/terraform-providers/data.nix b/pkgs/applications/networking/cluster/terraform-providers/data.nix
index 261d067eb1d0..421fc652a328 100644
--- a/pkgs/applications/networking/cluster/terraform-providers/data.nix
+++ b/pkgs/applications/networking/cluster/terraform-providers/data.nix
@@ -11,8 +11,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-alicloud";
-      version = "1.17.0";
-      sha256  = "1zmywmcgfmx5ccp0qxj912sqymisxdg2s84b4qclfa225hrbaqpn";
+      version = "1.21.0";
+      sha256  = "17853l2s5z1y2g24wdkapdp26hw0sx5w73y118h0px85fiwhkq79";
     };
   archive =
     {
@@ -39,15 +39,15 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-aws";
-      version = "1.38.0";
-      sha256  = "1jhr2l8p7wf7kgr2y0c40n1jb9p2153xkpcp4b2half2vhsh1nwi";
+      version = "1.42.0";
+      sha256  = "1wi1m7i6vq53p36x1prax4yaz400834024q494zg0ckk4rvngfp6";
     };
   azurerm =
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-azurerm";
-      version = "1.15.0";
-      sha256  = "1pdmj0ww5y2nwxivlf5l886nwd76hpqhwdayab2fp16zyl1qbpfd";
+      version = "1.17.0";
+      sha256  = "03sjlqkwy0qa382sjwi21g6h2fz1mpsiqcd4naj5zh76fkp8aslw";
     };
   azurestack =
     {
@@ -88,8 +88,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-circonus";
-      version = "0.1.1";
-      sha256  = "05n1q9hc0h31icxsmyi2y60wiwd5fs2hz1dqm3bl6hgh5x3ss1im";
+      version = "0.2.0";
+      sha256  = "1vcia3p31cgdwjs06k4244bk7ib2qp1f2lhc7hmyhdfi1c8jym45";
     };
   clc =
     {
@@ -102,8 +102,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-cloudflare";
-      version = "1.5.0";
-      sha256  = "0l8bmnxmjr2g3xxw8w0ay91cvs4kzc65wkdwybfahvq9r6mww45n";
+      version = "1.7.0";
+      sha256  = "0sqq6miwyh6z86b3wq2bhkaj4x39g2nqq784py8nm8gvs06gcm5a";
     };
   cloudscale =
     {
@@ -130,22 +130,22 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-consul";
-      version = "2.1.0";
-      sha256  = "1qm29vj8ms37zb4b3bhdv4b4vrl0am134zmc654lb2g582cnj9yw";
+      version = "2.2.0";
+      sha256  = "13jwvf7n7238pzvdq9m6vnl9vqa9hkr1mrcf9sa1q9lxkim9ijfk";
     };
   datadog =
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-datadog";
-      version = "1.3.0";
-      sha256  = "0d3xccfkzibjp4jl8irja1cdhppdn3b7nh4wy857zvfxpfhz7aj2";
+      version = "1.4.0";
+      sha256  = "06ik2k0jkm4200d8njpsidwfjl12ikn5ciqkmlxfwr3b8s1w8kpa";
     };
   digitalocean =
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-digitalocean";
-      version = "0.1.3";
-      sha256  = "10crxciw7y2gnm8vqp007vw0k7c1a1xk2z2zsjr5rksk6qlnri4k";
+      version = "1.0.2";
+      sha256  = "0ilkdnadzsidq8hia5wk4jyk6034pmajrpkgwf4ryz7kx41vy2g6";
     };
   dme =
     {
@@ -172,8 +172,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-docker";
-      version = "1.0.1";
-      sha256  = "1q5bsdvp47gvpiyqlzgrpxczlh6m9g870pn84ks49xfkwk5izpz6";
+      version = "1.1.0";
+      sha256  = "1ba9z9fd69hpg6kg30nf95zzskzipi74s1aadywc068gfrkdm9jj";
     };
   dyn =
     {
@@ -193,15 +193,15 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-fastly";
-      version = "0.3.0";
-      sha256  = "1hh4s81g256iy1rvp9snqbyhidz8n6p7pzanlxp89ffrq9p32sp0";
+      version = "0.4.0";
+      sha256  = "1fkn9b6ibs36cmhknb3x05g31rf73w70xwx05rh9fhybrz5dd9z9";
     };
   flexibleengine =
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-flexibleengine";
-      version = "1.1.0";
-      sha256  = "07g6kc211crxf9nvgvghg05jdahd1fb09lpwfcps9ph259pwwam3";
+      version = "1.2.1";
+      sha256  = "000v6fmmnwfibzfssk23s9qwrb8a9l0j1qd14x2dqsc7ql0kbnz8";
     };
   github =
     {
@@ -221,8 +221,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-google";
-      version = "1.18.0";
-      sha256  = "0zwy1imby0xqvb86a82rdvglipf2sfpi3rmsj72iikp7vi3mqk64";
+      version = "1.19.1";
+      sha256  = "1n2a1y9103xkndmvr5cvj7i1m8s9lv61vgijgk3m2f73pb4znak0";
     };
   grafana =
     {
@@ -235,15 +235,22 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-hcloud";
-      version = "1.3.0";
-      sha256  = "0sb9pajsy0if18vgw5pllgv8qvb4v7pv65m2f3hfkck2za82ndwb";
+      version = "1.4.0";
+      sha256  = "00mq6p2y61z4hg9dncf3mj59cp6fx4iqrn86m96wkw346shs6prs";
+    };
+  helm =
+    {
+      owner   = "terraform-providers";
+      repo    = "terraform-provider-helm";
+      version = "0.6.2";
+      sha256  = "11j4lpzbrdszgkjf1gjyibh9c5w0fly01qdkrflv98ry5csx9q5b";
     };
   heroku =
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-heroku";
-      version = "1.4.0";
-      sha256  = "159a9add5v4dj2bry1b85i74q2lb4pjjypkm5hzrbqys6gn2imhn";
+      version = "1.5.0";
+      sha256  = "0hzzhqd87vkcbzndsn15g4nl3qhv2kvnhs9zv6kbxaxm7p7rm3pz";
     };
   http =
     {
@@ -284,8 +291,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-kubernetes";
-      version = "1.2.0";
-      sha256  = "0slvhj8f7p27r9v4vb5vjyqpmzlpaji1djzwsxsf247df68mka61";
+      version = "1.3.0";
+      sha256  = "0fhh0r92whcxqz4z2kb6qx9dyygms5mz7ifhb9c7s2r22jnfz1j3";
     };
   librato =
     {
@@ -294,6 +301,13 @@
       version = "0.1.0";
       sha256  = "0bxadwj5s7bvc4vlymn3w6qckf14hz82r7q98w2nh55sqr52d923";
     };
+  linode =
+    {
+      owner   = "terraform-providers";
+      repo    = "terraform-provider-linode";
+      version = "1.1.0";
+      sha256  = "19c269w8jjx04a8rhm4x7bg2xad3y0s74wgis446mwaw7mhla3l3";
+    };
   local =
     {
       owner   = "terraform-providers";
@@ -340,8 +354,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-newrelic";
-      version = "1.0.1";
-      sha256  = "0g4fd2rvx90f2bmjl6jjdvrsx7ayhf30vj9y3mklhxgsd9x83wpq";
+      version = "1.1.0";
+      sha256  = "040pxbr4xp0h6s0njdwy0phlkblnk5p3xrcms2gkwyzkqpd82s8b";
     };
   nomad =
     {
@@ -371,12 +385,19 @@
       version = "1.0.0";
       sha256  = "12vpa09xrq8z1pjq0bwzq3889c4fl6c5kvynwqy0z1pdx21m60ha";
     };
+  nutanix =
+    {
+      owner   = "terraform-providers";
+      repo    = "terraform-provider-nutanix";
+      version = "1.0.0";
+      sha256  = "16nky5ryyjvv7vny18ymxvy20ivwmqw7lagnz48pq8mnwwrp5541";
+    };
   oci =
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-oci";
-      version = "3.1.1";
-      sha256  = "0wrvb44gs0c1khvam5lrq53l2889japg7d4nyk2hrpywy9japc8m";
+      version = "3.5.0";
+      sha256  = "0f4m6rahis1n62w0h0amg8sjs5bb3ifnrfzq1dys7r01k5411wcf";
     };
   oneandone =
     {
@@ -389,22 +410,22 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-opc";
-      version = "1.2.1";
-      sha256  = "0mnvi47kbdwwpfzdlcd1mhd15w5b0ivwxi1a5lvs0zyqf0g0cas8";
+      version = "1.3.0";
+      sha256  = "1ksqjfp6gxgrpc9gcs9jv3wj5058z93h7prv4mhvc2bilal4gc0p";
     };
   openstack =
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-openstack";
-      version = "1.9.0";
-      sha256  = "0prmdj78jsyrns876cglfp8a3dbpfl33bwb0dj072flh4yknfrdr";
+      version = "1.11.0";
+      sha256  = "1wqb7q10nyr4jy9ny4giazblwhh3qrn4s1f0xb5q702b5igbfwwm";
     };
   opentelekomcloud =
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-opentelekomcloud";
-      version = "1.1.0";
-      sha256  = "04pcgygcz2ld5hp7f29j2z3d4ypy4fm4m1zbbs9l9gc3fya88iny";
+      version = "1.2.0";
+      sha256  = "05w899l18gmdywfhakjvaxqxxzd9cxga3s932ljfibr0ssipkhh9";
     };
   opsgenie =
     {
@@ -431,8 +452,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-packet";
-      version = "1.2.4";
-      sha256  = "11ga29d5bzmn6rzlb6sb28nh1zbbwglinzn185pysqx6n21l6wva";
+      version = "1.2.5";
+      sha256  = "1c40w1q18piip4fn572mnf67g07h6g03hnin23c7jw265m4yr222";
     };
   pagerduty =
     {
@@ -445,8 +466,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-panos";
-      version = "1.4.0";
-      sha256  = "033xpglbn0q805b129kf1ywl13m4pgrkwlvgl347nldysryiasxq";
+      version = "1.4.1";
+      sha256  = "1mlz01v01675cf9ja8i42c6ssklf65kd8wpjzf0j472lfwki4xpp";
     };
   postgresql =
     {
@@ -508,15 +529,15 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-runscope";
-      version = "0.4.0";
-      sha256  = "1n3q2hdwvkkn5rphrcl5qfv4ry2mrr13dcjwzhbym2i1nhpxkld0";
+      version = "0.5.0";
+      sha256  = "0n0m39gaiwhqigjny51a7g36ldik33alimkqqbv6hqyzrhk0qs8h";
     };
   scaleway =
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-scaleway";
-      version = "1.6.0";
-      sha256  = "1ykcakfw0gp239jp4brpjynxzzvlhldfpv12hkgymj22s37n5jnn";
+      version = "1.7.0";
+      sha256  = "0gsjvpwfw2sc6ncy8v3j6gs0aanq3b08j3gid43687mfd782f4gk";
     };
   softlayer =
     {
@@ -553,6 +574,13 @@
       version = "1.0.0";
       sha256  = "0jl6bp6gwg96sdk5j6s13vv1j9gxjpy2yva3barmzv9138i665mz";
     };
+  tencentcloud =
+    {
+      owner   = "terraform-providers";
+      repo    = "terraform-provider-tencentcloud";
+      version = "1.2.2";
+      sha256  = "1ypsfm48c30szg3zc1sknblhwcnca8aapfgp62bhszyqxq6zq37s";
+    };
   terraform =
     {
       owner   = "terraform-providers";
@@ -592,8 +620,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-vault";
-      version = "1.1.4";
-      sha256  = "00i9rl9pnmicvndkmvcmlj6y80341dmkqnhq09f94yljh1w1zpvv";
+      version = "1.2.0";
+      sha256  = "1z92dcr5b665l69gxs1hw1rizc5znvf0ck1lksphd301l2ywk97b";
     };
   vcd =
     {
@@ -606,8 +634,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-vsphere";
-      version = "1.8.1";
-      sha256  = "0y6n7mvv1f3jqsxlvf68iq85k69fj7a333203vkvc83dba84aqki";
+      version = "1.9.0";
+      sha256  = "1by9klwvdw3m854jffimfnsz1lnbaixi4zcv4zzs63dc3flwy2b2";
     };
   matchbox =
     {

From f9bf6cef541542a3b02885e6d28dbacd5b8b8450 Mon Sep 17 00:00:00 2001
From: zimbatm <zimbatm@zimbatm.com>
Date: Sat, 3 Nov 2018 00:52:12 +0100
Subject: [PATCH 0369/1129] terraform_0_11: 0.11.8 -> 0.11.10

---
 pkgs/applications/networking/cluster/terraform/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/cluster/terraform/default.nix b/pkgs/applications/networking/cluster/terraform/default.nix
index a4ffe27102a6..583b6a06aeab 100644
--- a/pkgs/applications/networking/cluster/terraform/default.nix
+++ b/pkgs/applications/networking/cluster/terraform/default.nix
@@ -113,8 +113,8 @@ in rec {
   terraform_0_10-full = terraform_0_10.withPlugins lib.attrValues;
 
   terraform_0_11 = pluggable (generic {
-    version = "0.11.8";
-    sha256 = "1kdmx21l32vj5kvkimkx0s5mxgmgkdwlgbin4f3iqjflzip0cddh";
+    version = "0.11.10";
+    sha256 = "08mapla89g106bvqr41zfd7l4ki55by6207qlxq9caiha54nx4nb";
     patches = [ ./provider-path.patch ];
     passthru = { inherit plugins; };
   });

From 3fb4eb1c432a4f8cc92965db0e7b2c2856bde596 Mon Sep 17 00:00:00 2001
From: lewo <lewo@abesis.fr>
Date: Sat, 3 Nov 2018 01:00:53 +0100
Subject: [PATCH 0370/1129] nixos/dockerPreloader: preload docker images
 (#49379)

This module permits to preload Docker image in a VM in order to reduce
OIs on file copies. This module has to be only used in testing
environments, when the test requires several Docker images such as in
Kubernetes tests. In this case,
`virtualisation.dockerPreloader.images` can replace the
`services.kubernetes.kubelet.seedDockerImages` options.

The idea is to populate the /var/lib/docker directory by mounting qcow
files (we uses qcow file to avoid permission issues) that contain images.

For each image specified in
config.virtualisation.dockerPreloader.images:
1. The image is loaded by Docker in a VM
2. The resulting /var/lib/docker is written to a QCOW file

This set of QCOW files can then be used to populate the
/var/lib/docker:
1. Each QCOW is mounted in the VM
2. Symlink are created from these mount points to /var/lib/docker
3. A /var/lib/docker/image/overlay2/repositories.json file is generated
4. The docker daemon is started.
---
 .../virtualisation/docker-preloader.nix       | 135 ++++++++++++++++++
 nixos/modules/virtualisation/qemu-vm.nix      |   5 +-
 nixos/release.nix                             |   1 +
 nixos/tests/docker-preloader.nix              |  27 ++++
 4 files changed, 167 insertions(+), 1 deletion(-)
 create mode 100644 nixos/modules/virtualisation/docker-preloader.nix
 create mode 100644 nixos/tests/docker-preloader.nix

diff --git a/nixos/modules/virtualisation/docker-preloader.nix b/nixos/modules/virtualisation/docker-preloader.nix
new file mode 100644
index 000000000000..faa94f53d98f
--- /dev/null
+++ b/nixos/modules/virtualisation/docker-preloader.nix
@@ -0,0 +1,135 @@
+{ config, lib, pkgs, ... }:
+
+with lib;
+with builtins;
+
+let
+  cfg = config.virtualisation;
+
+  sanitizeImageName = image: replaceStrings ["/"] ["-"] image.imageName;
+  hash = drv: head (split "-" (baseNameOf drv.outPath));
+  # The label of an ext4 FS is limited to 16 bytes
+  labelFromImage = image: substring 0 16 (hash image);
+
+  # The Docker image is loaded and some files from /var/lib/docker/
+  # are written into a qcow image.
+  preload = image: pkgs.vmTools.runInLinuxVM (
+    pkgs.runCommand "docker-preload-image-${sanitizeImageName image}" {
+      buildInputs = with pkgs; [ docker e2fsprogs utillinux curl kmod ];
+      preVM = pkgs.vmTools.createEmptyImage {
+        size = cfg.dockerPreloader.qcowSize;
+        fullName = "docker-deamon-image.qcow2";
+      };
+    }
+    ''
+      mkfs.ext4 /dev/vda
+      e2label /dev/vda ${labelFromImage image}
+      mkdir -p /var/lib/docker
+      mount -t ext4 /dev/vda /var/lib/docker
+
+      modprobe overlay
+
+      # from https://github.com/tianon/cgroupfs-mount/blob/master/cgroupfs-mount
+      mount -t tmpfs -o uid=0,gid=0,mode=0755 cgroup /sys/fs/cgroup
+      cd /sys/fs/cgroup
+      for sys in $(awk '!/^#/ { if ($4 == 1) print $1 }' /proc/cgroups); do
+        mkdir -p $sys
+        if ! mountpoint -q $sys; then
+          if ! mount -n -t cgroup -o $sys cgroup $sys; then
+            rmdir $sys || true
+          fi
+        fi
+      done
+
+      dockerd -H tcp://127.0.0.1:5555 -H unix:///var/run/docker.sock &
+
+      until $(curl --output /dev/null --silent --connect-timeout 2 http://127.0.0.1:5555); do
+        printf '.'
+        sleep 1
+      done
+
+      docker load -i ${image}
+
+      kill %1
+      find /var/lib/docker/ -maxdepth 1 -mindepth 1 -not -name "image" -not -name "overlay2" | xargs rm -rf
+    '');
+
+  preloadedImages = map preload cfg.dockerPreloader.images;
+
+in
+
+{
+  options.virtualisation.dockerPreloader = {
+    images = mkOption {
+      default = [ ];
+      type = types.listOf types.package;
+      description =
+      ''
+        A list of Docker images to preload (in the /var/lib/docker directory).
+      '';
+    };
+    qcowSize = mkOption {
+      default = 1024;
+      type = types.int;
+      description =
+      ''
+        The size (MB) of qcow files.
+      '';
+    };
+  };
+
+  config = {
+    assertions = [{
+      # If docker.storageDriver is null, Docker choose the storage
+      # driver. So, in this case, we cannot be sure overlay2 is used.
+      assertion = cfg.dockerPreloader.images == []
+        || cfg.docker.storageDriver == "overlay2"
+        || cfg.docker.storageDriver == "overlay"
+        || cfg.docker.storageDriver == null;
+      message = "The Docker image Preloader only works with overlay2 storage driver!";
+    }];
+
+    virtualisation.qemu.options =
+      map (path: "-drive if=virtio,file=${path}/disk-image.qcow2,readonly,media=cdrom,format=qcow2")
+      preloadedImages;
+
+
+    # All attached QCOW files are mounted and their contents are linked
+    # to /var/lib/docker/ in order to make image available.
+    systemd.services.docker-preloader = {
+      description = "Preloaded Docker images";
+      wantedBy = ["docker.service"];
+      after = ["network.target"];
+      path = with pkgs; [ mount rsync jq ];
+      script = ''
+        mkdir -p /var/lib/docker/overlay2/l /var/lib/docker/image/overlay2
+        echo '{}' > /tmp/repositories.json
+
+        for i in ${concatStringsSep " " (map labelFromImage cfg.dockerPreloader.images)}; do
+          mkdir -p /mnt/docker-images/$i
+
+          # The ext4 label is limited to 16 bytes
+          mount /dev/disk/by-label/$(echo $i | cut -c1-16) -o ro,noload /mnt/docker-images/$i
+
+          find /mnt/docker-images/$i/overlay2/ -maxdepth 1 -mindepth 1 -not -name l\
+             -exec ln -s '{}' /var/lib/docker/overlay2/ \;
+          cp -P /mnt/docker-images/$i/overlay2/l/* /var/lib/docker/overlay2/l/
+
+          rsync -a /mnt/docker-images/$i/image/ /var/lib/docker/image/
+
+          # Accumulate image definitions
+          cp /tmp/repositories.json /tmp/repositories.json.tmp
+          jq -s '.[0] * .[1]' \
+            /tmp/repositories.json.tmp \
+            /mnt/docker-images/$i/image/overlay2/repositories.json \
+            > /tmp/repositories.json
+        done
+
+        mv /tmp/repositories.json /var/lib/docker/image/overlay2/repositories.json
+      '';
+      serviceConfig = {
+        Type = "oneshot";
+      };
+    };
+  };
+}
diff --git a/nixos/modules/virtualisation/qemu-vm.nix b/nixos/modules/virtualisation/qemu-vm.nix
index 4e9c87222d0a..ed3431554be4 100644
--- a/nixos/modules/virtualisation/qemu-vm.nix
+++ b/nixos/modules/virtualisation/qemu-vm.nix
@@ -185,7 +185,10 @@ let
 in
 
 {
-  imports = [ ../profiles/qemu-guest.nix ];
+  imports = [
+    ../profiles/qemu-guest.nix
+   ./docker-preloader.nix
+  ];
 
   options = {
 
diff --git a/nixos/release.nix b/nixos/release.nix
index 51505d6aab9d..2bd70f7962fe 100644
--- a/nixos/release.nix
+++ b/nixos/release.nix
@@ -283,6 +283,7 @@ in rec {
   tests.docker-tools = callTestOnMatchingSystems ["x86_64-linux"] tests/docker-tools.nix {};
   tests.docker-tools-overlay = callTestOnMatchingSystems ["x86_64-linux"] tests/docker-tools-overlay.nix {};
   tests.docker-edge = callTestOnMatchingSystems ["x86_64-linux"] tests/docker-edge.nix {};
+  tests.docker-preloader = callTestOnMatchingSystems ["x86_64-linux"] tests/docker-preloader.nix {};
   tests.docker-registry = callTest tests/docker-registry.nix {};
   tests.dovecot = callTest tests/dovecot.nix {};
   tests.dnscrypt-proxy = callTestOnMatchingSystems ["x86_64-linux"] tests/dnscrypt-proxy.nix {};
diff --git a/nixos/tests/docker-preloader.nix b/nixos/tests/docker-preloader.nix
new file mode 100644
index 000000000000..eeedec9a392e
--- /dev/null
+++ b/nixos/tests/docker-preloader.nix
@@ -0,0 +1,27 @@
+import ./make-test.nix ({ pkgs, ...} : {
+  name = "docker-preloader";
+  meta = with pkgs.stdenv.lib.maintainers; {
+    maintainers = [ lewo ];
+  };
+
+  nodes = {
+    docker =
+      { pkgs, ... }:
+        {
+          virtualisation.docker.enable = true;
+          virtualisation.dockerPreloader.images = [ pkgs.dockerTools.examples.nix pkgs.dockerTools.examples.bash ];
+
+          services.openssh.enable = true;
+          services.openssh.permitRootLogin = "yes";
+          services.openssh.extraConfig = "PermitEmptyPasswords yes";
+          users.extraUsers.root.password = "";
+        };
+  };    
+  testScript = ''
+    startAll;
+    
+    $docker->waitForUnit("sockets.target");
+    $docker->succeed("docker run nix nix-store --version");
+    $docker->succeed("docker run bash bash --version");
+  '';
+})

From d87a2481d2e7dc8d1a10397c8feb56af0854eaca Mon Sep 17 00:00:00 2001
From: Vladyslav Mykhailichenko <dywedir@pm.me>
Date: Sat, 3 Nov 2018 02:06:08 +0200
Subject: [PATCH 0371/1129] bat: fix build on darwin

---
 pkgs/tools/misc/bat/default.nix | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/pkgs/tools/misc/bat/default.nix b/pkgs/tools/misc/bat/default.nix
index 4bd4a02c7a2d..d449b3b82f92 100644
--- a/pkgs/tools/misc/bat/default.nix
+++ b/pkgs/tools/misc/bat/default.nix
@@ -20,6 +20,9 @@ rustPlatform.buildRustPackage rec {
 
   buildInputs = stdenv.lib.optionals stdenv.isDarwin [ Security libiconv ];
 
+  # https://github.com/NixOS/nixpkgs/issues/49642
+  doCheck = !stdenv.isDarwin;
+
   postInstall = ''
     install -m 444 -Dt $out/share/man/man1 doc/bat.1
 

From 791e98eb900377e7654cdcb1d24e1607d982b940 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 2 Nov 2018 19:07:08 -0500
Subject: [PATCH 0372/1129] Add myself to a few CODEOWNERS paths

---
 .github/CODEOWNERS | 18 ++++++++++++++----
 1 file changed, 14 insertions(+), 4 deletions(-)

diff --git a/.github/CODEOWNERS b/.github/CODEOWNERS
index f222af230bb1..e819d451fd55 100644
--- a/.github/CODEOWNERS
+++ b/.github/CODEOWNERS
@@ -12,7 +12,7 @@
 
 # Libraries
 /lib                        @edolstra @nbp
-/lib/systems                @nbp @ericson2314
+/lib/systems                @nbp @ericson2314 @matthewbauer
 /lib/generators.nix         @edolstra @nbp @Profpatsch
 /lib/debug.nix              @edolstra @nbp @Profpatsch
 
@@ -20,9 +20,11 @@
 /default.nix                          @nbp
 /pkgs/top-level/default.nix           @nbp @Ericson2314
 /pkgs/top-level/impure.nix            @nbp @Ericson2314
-/pkgs/top-level/stage.nix             @nbp @Ericson2314
-/pkgs/stdenv/generic                  @Ericson2314
-/pkgs/stdenv/cross                    @Ericson2314
+/pkgs/top-level/stage.nix             @nbp @Ericson2314 @matthewbauer
+/pkgs/top-level/splice.nix            @Ericson2314 @matthewbauer
+/pkgs/top-level/release-cross.nix     @Ericson2314 @matthewbauer
+/pkgs/stdenv/generic                  @Ericson2314 @matthewbauer
+/pkgs/stdenv/cross                    @Ericson2314 @matthewbauer
 /pkgs/build-support/cc-wrapper        @Ericson2314 @orivej
 /pkgs/build-support/bintools-wrapper  @Ericson2314 @orivej
 /pkgs/build-support/setup-hooks       @Ericson2314
@@ -74,6 +76,14 @@
 /pkgs/stdenv/darwin         @NixOS/darwin-maintainers
 /pkgs/os-specific/darwin    @NixOS/darwin-maintainers
 
+# C compilers
+/pkgs/development/compilers/gcc @matthewbauer
+/pkgs/development/compilers/llvm @matthewbauer
+
+# Compatibility stuff
+/pkgs/top-level/unix-tools.nix @matthewbauer
+/pkgs/development/tools/xcbuild @matthewbauer
+
 # Beam-related (Erlang, Elixir, LFE, etc)
 /pkgs/development/beam-modules                  @gleber
 /pkgs/development/interpreters/erlang           @gleber

From 9e491f732a6c7d2ab61db0b9c0f625bf560c1b87 Mon Sep 17 00:00:00 2001
From: Florian Klink <flokli@flokli.de>
Date: Sat, 3 Nov 2018 01:44:47 +0100
Subject: [PATCH 0373/1129] gitlab: 11.4.3 -> 11.4.4

SSRF in Kubernetes integration
The GitLab Kubernetes integration was vulnerable to a SSRF issue which could allow an attacker to make requests to access any internal URLs. The issue is now mitigated in the latest release and is assigned CVE-2018-18843.
---
 .../applications/version-management/gitlab/default.nix | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/pkgs/applications/version-management/gitlab/default.nix b/pkgs/applications/version-management/gitlab/default.nix
index 933db40cfc0e..c1c4d20feacb 100644
--- a/pkgs/applications/version-management/gitlab/default.nix
+++ b/pkgs/applications/version-management/gitlab/default.nix
@@ -11,29 +11,29 @@ let
     groups = [ "default" "unicorn" "ed25519" "metrics" ];
   };
 
-  version = "11.4.3";
+  version = "11.4.4";
 
   sources = if gitlabEnterprise then {
     gitlabDeb = fetchurl {
       url = "https://packages.gitlab.com/gitlab/gitlab-ee/packages/debian/stretch/gitlab-ee_${version}-ee.0_amd64.deb/download.deb";
-      sha256 = "1cw75qj508z6n00rqgqjzdm2013kyb7c57cypmq0m08nc6f3jspz";
+      sha256 = "15lpcdjcw6lpmzlhqnpd6pgaxh7wvx2mldjd1vqr414r4bcnhgy4";
     };
     gitlab = fetchFromGitLab {
       owner = "gitlab-org";
       repo = "gitlab-ee";
       rev = "v${version}-ee";
-      sha256 = "1vqc77whpbsifbm9vgcmpxnw13v8jz1s9q04i8jfv99c59fjlids";
+      sha256 = "046hchr7q4jnx3j4yxg3rdixfzlva35al3ci26pf9vxrbbl5y8cg";
     };
   } else {
     gitlabDeb = fetchurl {
       url = "https://packages.gitlab.com/gitlab/gitlab-ce/packages/debian/stretch/gitlab-ce_${version}-ce.0_amd64.deb/download.deb";
-      sha256 = "0vk03k42pp92h520wnynl9czcigjhj9m7y68z1x0gwqr9m61r7zm";
+      sha256 = "02p7azyjgb984bk491q6f4zk1mikbcd38rif08kl07bjjzzkir81";
     };
     gitlab = fetchFromGitLab {
       owner = "gitlab-org";
       repo = "gitlab-ce";
       rev = "v${version}";
-      sha256 = "1zvjz2gv2vwqqjz52zcvi0ap3d8rdbpgsqk9wv80hqq4v37a5gfx";
+      sha256 = "1hq9iyp0xrxwmncn61ja3pdj9h2hmdy1l63d1ic3r1dyacybaf2g";
     };
   };
 

From 7959f77fadb43616b1244a61b8a1c46cced4efa0 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Fri, 2 Nov 2018 17:09:25 -0500
Subject: [PATCH 0374/1129] bup: 0.29.1 -> 0.29.2

https://github.com/bup/bup/blob/master/note/0.29.2-from-0.29.1.md
---
 pkgs/tools/backup/bup/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/backup/bup/default.nix b/pkgs/tools/backup/bup/default.nix
index f24e89fcc840..bf10f556b6bb 100644
--- a/pkgs/tools/backup/bup/default.nix
+++ b/pkgs/tools/backup/bup/default.nix
@@ -5,7 +5,7 @@
 
 assert par2Support -> par2cmdline != null;
 
-let version = "0.29.1"; in
+let version = "0.29.2"; in
 
 with stdenv.lib;
 
@@ -16,7 +16,7 @@ stdenv.mkDerivation rec {
     repo = "bup";
     owner = "bup";
     rev = version;
-    sha256 = "0wdr399jf64zzzsdvldhrwvnh5xpbghjvslr1j2cwr5y4i36znxf";
+    sha256 = "17lpbyhf43gcln5s43m2zzgichcx7jq6ragcawfklw6svg1vnj89";
   };
 
   buildInputs = [

From 0923607ff74c78c4055e936c0a5fc89015c7e6bb Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 2 Nov 2018 20:39:40 -0500
Subject: [PATCH 0375/1129] gemrb: add libiconv

https://hydra.nixos.org/build/83508053/
---
 pkgs/games/gemrb/default.nix | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/pkgs/games/gemrb/default.nix b/pkgs/games/gemrb/default.nix
index 0e9025259224..fc7bf7168ddf 100644
--- a/pkgs/games/gemrb/default.nix
+++ b/pkgs/games/gemrb/default.nix
@@ -1,5 +1,6 @@
 { stdenv, fetchFromGitHub, cmake
-, freetype, SDL2, SDL2_mixer, openal, zlib, libpng, python, libvorbis }:
+, freetype, SDL2, SDL2_mixer, openal, zlib, libpng, python, libvorbis
+, libiconv }:
 
 stdenv.mkDerivation rec {
   name = "gemrb-${version}";
@@ -13,7 +14,7 @@ stdenv.mkDerivation rec {
   };
 
   # TODO: make libpng, libvorbis, sdl_mixer, freetype, vlc, glew (and other gl reqs) optional
-  buildInputs = [ freetype python openal SDL2 SDL2_mixer zlib libpng libvorbis ];
+  buildInputs = [ freetype python openal SDL2 SDL2_mixer zlib libpng libvorbis libiconv ];
 
   nativeBuildInputs = [ cmake ];
 

From 8bae7d328e072901386ff1bb255b56484a606ee1 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 2 Nov 2018 20:41:38 -0500
Subject: [PATCH 0376/1129] gsasl: disable check on darwin

---
 pkgs/development/libraries/gsasl/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/libraries/gsasl/default.nix b/pkgs/development/libraries/gsasl/default.nix
index 71da2c716f84..a1df933149fd 100644
--- a/pkgs/development/libraries/gsasl/default.nix
+++ b/pkgs/development/libraries/gsasl/default.nix
@@ -12,7 +12,7 @@ stdenv.mkDerivation rec {
 
   configureFlags = [ "--with-gssapi-impl=mit" ];
 
-  doCheck = true;
+  doCheck = !stdenv.hostPlatform.isDarwin;
 
   meta = {
     description = "GNU SASL, Simple Authentication and Security Layer library";

From 3085f5fcb84f47a6ae0590f4be9c8dcce97c413b Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 2 Nov 2018 21:12:17 -0500
Subject: [PATCH 0377/1129] libobjc2: mark aarch64 as bad platform

Apparently some assembly has not been ported. This commit should fix
it:

https://github.com/gnustep/libobjc2/commit/b952a21abe8b0f9878b1ec5161ea530058512f4a#diff-e49aa4e60f8ccec1be46afc5e6ffcee5

But no release has been made by the gnustep team yet!
---
 pkgs/desktops/gnustep/libobjc2/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/desktops/gnustep/libobjc2/default.nix b/pkgs/desktops/gnustep/libobjc2/default.nix
index a3e718187c7f..3aba235b3a79 100644
--- a/pkgs/desktops/gnustep/libobjc2/default.nix
+++ b/pkgs/desktops/gnustep/libobjc2/default.nix
@@ -24,5 +24,6 @@ stdenv.mkDerivation rec {
     license = licenses.mit;
     maintainers = with maintainers; [ ashalkhakov matthewbauer ];
     platforms = platforms.unix;
+    badPlatforms = [ "aarch64-linux" ];
   };
 }

From e9db1e29172f478a51b34e317cc141886785e734 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 2 Nov 2018 21:17:13 -0500
Subject: [PATCH 0378/1129] grpc: disable werror for unknown warning option

This seems silly to do an error for. It breaks clang builds.
---
 pkgs/development/libraries/grpc/default.nix | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/pkgs/development/libraries/grpc/default.nix b/pkgs/development/libraries/grpc/default.nix
index a21e2aacde2a..e568ea9eb650 100644
--- a/pkgs/development/libraries/grpc/default.nix
+++ b/pkgs/development/libraries/grpc/default.nix
@@ -26,6 +26,8 @@ stdenv.mkDerivation rec {
     rm -vf BUILD
   '';
 
+  NIX_CFLAGS_COMPILE = "-Wno-error=unknown-warning-option";
+
   enableParallelBuilds = true;
 
   meta = with stdenv.lib; {

From 78ca6d885ffbeba8b2cfe1fe68c3980e74fd4e5d Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Fri, 2 Nov 2018 21:22:36 -0500
Subject: [PATCH 0379/1129] stage.nix: pkgsi686Linux only works on x86 family

aarch64 cpus are going to break on pkgsi686Linux packages.

See this error:

https://hydra.nixos.org/build/82962379/
---
 pkgs/top-level/stage.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/top-level/stage.nix b/pkgs/top-level/stage.nix
index 37724a870a30..f838d707b0c0 100644
--- a/pkgs/top-level/stage.nix
+++ b/pkgs/top-level/stage.nix
@@ -150,7 +150,7 @@ let
 
     # All packages built for i686 Linux.
     # Used by wine, firefox with debugging version of Flash, ...
-    pkgsi686Linux = assert stdenv.hostPlatform.isLinux; nixpkgsFun {
+    pkgsi686Linux = assert stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isx86; nixpkgsFun {
       inherit overlays config;
       ${if stdenv.hostPlatform == stdenv.buildPlatform
         then "localSystem" else "crossSystem"} = {

From 126e64e658ad41852637a92c48382fab34d86ff4 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Wed, 31 Oct 2018 11:12:56 -0700
Subject: [PATCH 0380/1129] asmfmt: init at 1.1

---
 pkgs/development/tools/asmfmt/default.nix | 37 +++++++++++++++++++++++
 pkgs/development/tools/asmfmt/deps.nix    | 20 ++++++++++++
 pkgs/top-level/all-packages.nix           |  2 ++
 3 files changed, 59 insertions(+)
 create mode 100644 pkgs/development/tools/asmfmt/default.nix
 create mode 100644 pkgs/development/tools/asmfmt/deps.nix

diff --git a/pkgs/development/tools/asmfmt/default.nix b/pkgs/development/tools/asmfmt/default.nix
new file mode 100644
index 000000000000..d2cb7e807b58
--- /dev/null
+++ b/pkgs/development/tools/asmfmt/default.nix
@@ -0,0 +1,37 @@
+{ buildGoPackage
+, lib
+, fetchFromGitHub
+, fetchpatch
+}:
+
+buildGoPackage rec {
+  name = "asmfmt-${version}";
+  version = "1.1";
+
+  goPackagePath = "github.com/klauspost/asmfmt";
+
+  src = fetchFromGitHub {
+    owner = "klauspost";
+    repo = "asmfmt";
+    rev = "v${version}";
+    sha256 = "08mybfizcvck460axakycz9ndzcgwqilp5mmgm4bl8hfrn36mskw";
+  };
+
+  patches = [
+    (fetchpatch {
+      excludes = ["README.md"];
+      url = "https://github.com/klauspost/asmfmt/commit/39a37c8aed8095e0fdfb07f78fc8acbd465d9627.patch";
+      sha256 = "18bc77l87mf0yvqc3adlakxz6wflyqfsc2wrmh9q0nlqghlmnw5k";
+    })
+  ];
+
+  goDeps = ./deps.nix;
+
+  meta = with lib; {
+    description = "Go Assembler Formatter";
+    homepage = https://github.com/klauspost/asmfmt;
+    license = licenses.mit;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.linux ++ platforms.darwin;
+  };
+}
diff --git a/pkgs/development/tools/asmfmt/deps.nix b/pkgs/development/tools/asmfmt/deps.nix
new file mode 100644
index 000000000000..0288fc206d49
--- /dev/null
+++ b/pkgs/development/tools/asmfmt/deps.nix
@@ -0,0 +1,20 @@
+[
+  {
+    goPackagePath = "golang.org/x/tools";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/tools";
+      rev = "3a10b9bf0a52df7e992a8c3eb712a86d3c896c75";
+      sha256 = "19f3dijcc54jnd7458jab2dgpd0gzccmv2qympd9wi8cc8jpnhws";
+    };
+  }
+  {
+    goPackagePath = "sourcegraph.com/sqs/goreturns";
+    fetch = {
+      type = "git";
+      url = "https://github.com/sqs/goreturns";
+      rev = "538ac601451833c7c4449f8431d65d53c1c60e41";
+      sha256 = "0gcplch8zmcgwl6xvcffxg50g3xnf60n7dlqxgn51179qcjr354p";
+    };
+  }
+]
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 62cef2d50689..9ee9fc5ccd29 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -801,6 +801,8 @@ with pkgs;
   };
   aria = aria2;
 
+  asmfmt = callPackage ../development/tools/asmfmt { };
+
   aspcud = callPackage ../tools/misc/aspcud { };
 
   at = callPackage ../tools/system/at { };

From 6d7413e54aeca2c3fe0314fb3d964c53a9a7fa0e Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Wed, 31 Oct 2018 11:21:52 -0700
Subject: [PATCH 0381/1129] errcheck: init at 1.1.0

---
 pkgs/development/tools/errcheck/default.nix | 29 +++++++++++++++++++++
 pkgs/development/tools/errcheck/deps.nix    | 20 ++++++++++++++
 pkgs/top-level/all-packages.nix             |  2 ++
 3 files changed, 51 insertions(+)
 create mode 100644 pkgs/development/tools/errcheck/default.nix
 create mode 100644 pkgs/development/tools/errcheck/deps.nix

diff --git a/pkgs/development/tools/errcheck/default.nix b/pkgs/development/tools/errcheck/default.nix
new file mode 100644
index 000000000000..1ce49a4cbb9d
--- /dev/null
+++ b/pkgs/development/tools/errcheck/default.nix
@@ -0,0 +1,29 @@
+{ buildGoPackage
+, lib
+, fetchFromGitHub
+}:
+
+buildGoPackage rec {
+  name = "errcheck-${version}";
+  version = "1.1.0";
+
+  goPackagePath = "github.com/kisielk/errcheck";
+  excludedPackages = "\\(testdata\\)";
+
+  src = fetchFromGitHub {
+    owner = "kisielk";
+    repo = "errcheck";
+    rev = "v${version}";
+    sha256 = "19vd4rxmqbk5lpiav3pf7df3yjlz0l0dwx9mn0gjq5f998iyhy6y";
+  };
+
+  goDeps = ./deps.nix;
+
+  meta = with lib; {
+    description = "errcheck is a program for checking for unchecked errors in go programs.";
+    homepage = https://github.com/kisielk/errcheck;
+    license = licenses.mit;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.linux ++ platforms.darwin;
+  };
+}
diff --git a/pkgs/development/tools/errcheck/deps.nix b/pkgs/development/tools/errcheck/deps.nix
new file mode 100644
index 000000000000..8470c9e12aa6
--- /dev/null
+++ b/pkgs/development/tools/errcheck/deps.nix
@@ -0,0 +1,20 @@
+[
+  {
+    goPackagePath = "github.com/kisielk/gotool";
+    fetch = {
+      type = "git";
+      url = "https://github.com/kisielk/gotool";
+      rev = "80517062f582ea3340cd4baf70e86d539ae7d84d";
+      sha256 = "14af2pa0ssyp8bp2mvdw184s5wcysk6akil3wzxmr05wwy951iwn";
+    };
+  }
+  {
+    goPackagePath = "golang.org/x/tools";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/tools";
+      rev = "3a10b9bf0a52df7e992a8c3eb712a86d3c896c75";
+      sha256 = "19f3dijcc54jnd7458jab2dgpd0gzccmv2qympd9wi8cc8jpnhws";
+    };
+  }
+]
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 9ee9fc5ccd29..deea7f6b57c2 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -1313,6 +1313,8 @@ with pkgs;
 
   envsubst = callPackage ../tools/misc/envsubst { };
 
+  errcheck = callPackage ../development/tools/errcheck { };
+
   eschalot = callPackage ../tools/security/eschalot { };
 
   esptool = callPackage ../tools/misc/esptool { };

From f6e78e49fa6bc2f9e613ba95abc38bc4bb0083cc Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Thu, 1 Nov 2018 21:16:46 -0700
Subject: [PATCH 0382/1129] reftools: init at unstable 2018-09-14

---
 pkgs/development/tools/reftools/default.nix | 29 +++++++++++++++++++++
 pkgs/top-level/all-packages.nix             |  2 ++
 2 files changed, 31 insertions(+)
 create mode 100644 pkgs/development/tools/reftools/default.nix

diff --git a/pkgs/development/tools/reftools/default.nix b/pkgs/development/tools/reftools/default.nix
new file mode 100644
index 000000000000..6ef724022e8c
--- /dev/null
+++ b/pkgs/development/tools/reftools/default.nix
@@ -0,0 +1,29 @@
+{ buildGoPackage
+, lib
+, fetchFromGitHub
+}:
+
+buildGoPackage rec {
+  name = "reftools-unstable-${version}";
+  version = "2018-09-14";
+  rev = "654d0ba4f96d62286ca33cd46f7674b84f76d399";
+
+  goPackagePath = "github.com/davidrjenni/reftools";
+  excludedPackages = "\\(cmd/fillswitch/test-fixtures\\)";
+
+  src = fetchFromGitHub {
+    inherit rev;
+
+    owner = "davidrjenni";
+    repo = "reftools";
+    sha256 = "12y2h1h15xadc8pa3xsj11hpdxz5dss6k7xaa4h1ifkvnasjp5w2";
+  };
+
+  meta = with lib; {
+    description = "reftools - refactoring tools for Go";
+    homepage = https://github.com/davidrjenni/reftools;
+    license = licenses.bsd2;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.linux ++ platforms.darwin;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index deea7f6b57c2..6524cf2e1bda 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -5095,6 +5095,8 @@ with pkgs;
 
   recoverjpeg = callPackage ../tools/misc/recoverjpeg { };
 
+  reftools = callPackage ../development/tools/reftools { };
+
   reposurgeon = callPackage ../applications/version-management/reposurgeon { };
 
   reptyr = callPackage ../os-specific/linux/reptyr {};

From f5e493927786805280967c8f04d1a5d5c01c8065 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Thu, 1 Nov 2018 21:34:11 -0700
Subject: [PATCH 0383/1129] gogetdoc: init at unstable 2018-10-25

---
 pkgs/development/tools/gogetdoc/default.nix | 31 +++++++++++++++++++++
 pkgs/development/tools/gogetdoc/deps.nix    | 13 +++++++++
 pkgs/top-level/all-packages.nix             |  2 ++
 3 files changed, 46 insertions(+)
 create mode 100644 pkgs/development/tools/gogetdoc/default.nix
 create mode 100644 pkgs/development/tools/gogetdoc/deps.nix

diff --git a/pkgs/development/tools/gogetdoc/default.nix b/pkgs/development/tools/gogetdoc/default.nix
new file mode 100644
index 000000000000..7724ee49465c
--- /dev/null
+++ b/pkgs/development/tools/gogetdoc/default.nix
@@ -0,0 +1,31 @@
+{ buildGoPackage
+, lib
+, fetchFromGitHub
+}:
+
+buildGoPackage rec {
+  name = "gogetdoc-unstable-${version}";
+  version = "2018-10-25";
+  rev = "9098cf5fc236a5e25060730544af2ba6d65cd968";
+
+  goPackagePath = "github.com/zmb3/gogetdoc";
+  excludedPackages = "\\(testdata\\)";
+
+  src = fetchFromGitHub {
+    inherit rev;
+
+    owner = "zmb3";
+    repo = "gogetdoc";
+    sha256 = "159dgkd2lz07kimbpzminli5p539l4ry0dr93r46iz3lk5q76znl";
+  };
+
+  goDeps = ./deps.nix;
+
+  meta = with lib; {
+    description = "Gets documentation for items in Go source code";
+    homepage = https://github.com/zmb3/gogetdoc;
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.linux ++ platforms.darwin;
+  };
+}
diff --git a/pkgs/development/tools/gogetdoc/deps.nix b/pkgs/development/tools/gogetdoc/deps.nix
new file mode 100644
index 000000000000..d770057d1d78
--- /dev/null
+++ b/pkgs/development/tools/gogetdoc/deps.nix
@@ -0,0 +1,13 @@
+# file generated from go.mod using vgo2nix (https://github.com/adisbladis/vgo2nix)
+[
+
+  {
+    goPackagePath = "golang.org/x/tools";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/tools";
+      rev = "6adeb8aab2de";
+      sha256 = "0kylkki0ksdm12ppl37fghzbma9hmgqwph0nwngv08v4blk6li6k";
+    };
+  }
+]
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 6524cf2e1bda..76ee48be1f4a 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -6949,6 +6949,8 @@ with pkgs;
 
   go-junit-report = callPackage ../development/tools/go-junit-report { };
 
+  gogetdoc = callPackage ../development/tools/gogetdoc { };
+
   gox = callPackage ../development/tools/gox { };
 
   gprolog = callPackage ../development/compilers/gprolog { };

From 9795ad34ddffffe9a0389d29a0a001bcf61e082b Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Fri, 2 Nov 2018 09:36:24 -0700
Subject: [PATCH 0384/1129] deadcode: init at unstable 2016-07-24

---
 pkgs/development/tools/deadcode/default.nix | 31 +++++++++++++++++++++
 pkgs/top-level/all-packages.nix             |  2 ++
 2 files changed, 33 insertions(+)
 create mode 100644 pkgs/development/tools/deadcode/default.nix

diff --git a/pkgs/development/tools/deadcode/default.nix b/pkgs/development/tools/deadcode/default.nix
new file mode 100644
index 000000000000..fbed4e905cfc
--- /dev/null
+++ b/pkgs/development/tools/deadcode/default.nix
@@ -0,0 +1,31 @@
+{ buildGoPackage
+, lib
+, fetchFromGitHub
+}:
+
+# TODO(yl): should we package https://github.com/remyoudompheng/go-misc instead of
+# the standalone extract of deadcode from it?
+buildGoPackage rec {
+  name = "deadcode-unstable-${version}";
+  version = "2016-07-24";
+  rev = "210d2dc333e90c7e3eedf4f2242507a8e83ed4ab";
+
+  goPackagePath = "github.com/tsenart/deadcode";
+  excludedPackages = "\\(cmd/fillswitch/test-fixtures\\)";
+
+  src = fetchFromGitHub {
+    inherit rev;
+
+    owner = "tsenart";
+    repo = "deadcode";
+    sha256 = "05kif593f4wygnrq2fdjhn7kkcpdmgjnykcila85d0gqlb1f36g0";
+  };
+
+  meta = with lib; {
+    description = "deadcode is a very simple utility which detects unused declarations in a Go package.";
+    homepage = https://github.com/remyoudompheng/go-misc/tree/master/deadcode;
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.linux ++ platforms.darwin;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 76ee48be1f4a..ce5d202eaca2 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -122,6 +122,8 @@ with pkgs;
     inherit dhall-nix;
   };
 
+  deadcode = callPackage ../development/tools/deadcode { };
+
   diffPlugins = (callPackage ../build-support/plugins.nix {}).diffPlugins;
 
   dieHook = makeSetupHook {} ../build-support/setup-hooks/die.sh;

From d225933b4e3f543bea9e1935316669f27d4678e5 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Fri, 2 Nov 2018 20:20:14 -0700
Subject: [PATCH 0385/1129] go-tools: init at 2017.2.2

---
 pkgs/development/tools/go-tools/default.nix | 29 +++++++++++++++++++++
 pkgs/development/tools/go-tools/deps.nix    | 20 ++++++++++++++
 pkgs/top-level/all-packages.nix             |  2 ++
 3 files changed, 51 insertions(+)
 create mode 100644 pkgs/development/tools/go-tools/default.nix
 create mode 100644 pkgs/development/tools/go-tools/deps.nix

diff --git a/pkgs/development/tools/go-tools/default.nix b/pkgs/development/tools/go-tools/default.nix
new file mode 100644
index 000000000000..7e599ed8de71
--- /dev/null
+++ b/pkgs/development/tools/go-tools/default.nix
@@ -0,0 +1,29 @@
+{ buildGoPackage
+, lib
+, fetchFromGitHub
+}:
+
+buildGoPackage rec {
+  name = "go-tools-${version}";
+  version = "2017.2.2";
+
+  goPackagePath = "honnef.co/go/tools";
+  excludedPackages = ''\(simple\|ssa\|ssa/ssautil\|lint\|staticcheck\|unused\)/testdata'';
+
+  src = fetchFromGitHub {
+    owner = "dominikh";
+    repo = "go-tools";
+    rev = "${version}";
+    sha256 = "1khl6szjj0skkfqp234p9rf3icik7fw2pk2x0wbj3wa9q3f84hb7";
+  };
+
+  goDeps = ./deps.nix;
+
+  meta = with lib; {
+    description = "A collection of tools and libraries for working with Go code, including linters and static analysis.";
+    homepage = https://staticcheck.io;
+    license = licenses.mit;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.linux ++ platforms.darwin;
+  };
+}
diff --git a/pkgs/development/tools/go-tools/deps.nix b/pkgs/development/tools/go-tools/deps.nix
new file mode 100644
index 000000000000..afe5e50e47bd
--- /dev/null
+++ b/pkgs/development/tools/go-tools/deps.nix
@@ -0,0 +1,20 @@
+[
+  {
+    goPackagePath = "github.com/kisielk/gotool";
+    fetch = {
+      type = "git";
+      url = "https://github.com/kisielk/gotool";
+      rev = "80517062f582ea3340cd4baf70e86d539ae7d84d";
+      sha256 = "14af2pa0ssyp8bp2mvdw184s5wcysk6akil3wzxmr05wwy951iwn";
+    };
+  }
+  {
+    goPackagePath = "golang.org/x/tools";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/tools";
+      rev = "96e9e165b75e735822645eff82850b08c377be36";
+      sha256 = "1zj9ck5sg9b0pphxybmvxf64hhcap7v7j37fx3v5aknf18crjjdg";
+    };
+  }
+]
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index ce5d202eaca2..0f2bf40435c6 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -14739,6 +14739,8 @@ with pkgs;
 
   govendor = callPackage ../development/tools/govendor { };
 
+  go-tools = callPackage ../development/tools/go-tools { };
+
   gotools = callPackage ../development/tools/gotools { };
 
   gotop = callPackage ../tools/system/gotop { };

From df46a94d8b786553fe0f75a69b5164fc597b3a9d Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Fri, 2 Nov 2018 20:29:28 -0700
Subject: [PATCH 0386/1129] ineffassign: init at unstable 2018-09-09

---
 .../development/tools/ineffassign/default.nix | 29 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 31 insertions(+)
 create mode 100644 pkgs/development/tools/ineffassign/default.nix

diff --git a/pkgs/development/tools/ineffassign/default.nix b/pkgs/development/tools/ineffassign/default.nix
new file mode 100644
index 000000000000..10e5c61025ab
--- /dev/null
+++ b/pkgs/development/tools/ineffassign/default.nix
@@ -0,0 +1,29 @@
+{ buildGoPackage
+, lib
+, fetchFromGitHub
+}:
+
+buildGoPackage rec {
+  name = "ineffassign-unstable-${version}";
+  version = "2018-09-09";
+	rev = "1003c8bd00dc2869cb5ca5282e6ce33834fed514";
+
+  goPackagePath = "github.com/gordonklaus/ineffassign";
+  excludedPackages = ''testdata'';
+
+  src = fetchFromGitHub {
+    inherit rev;
+
+    owner = "gordonklaus";
+    repo = "ineffassign";
+    sha256 = "1rkzqvd3z03vq8q8qi9cghvgggsf02ammj9wq8jvpnx6b2sd16nd";
+  };
+
+  meta = with lib; {
+    description = "Detect ineffectual assignments in Go code.";
+    homepage = https://github.com/gordonklaus/ineffassign;
+    license = licenses.mit;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.linux ++ platforms.darwin;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 0f2bf40435c6..50c011729fca 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -10142,6 +10142,8 @@ with pkgs;
 
   imlibsetroot = callPackage ../applications/graphics/imlibsetroot { libXinerama = xorg.libXinerama; } ;
 
+  ineffassign = callPackage ../development/tools/ineffassign { };
+
   ijs = callPackage ../development/libraries/ijs { };
 
   incrtcl = callPackage ../development/libraries/incrtcl { };

From 63d9863394f7359595fc52fc962d8ad58638ee5b Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Fri, 2 Nov 2018 20:43:40 -0700
Subject: [PATCH 0387/1129] unconvert: init at unstable 2018-07-03

---
 pkgs/development/tools/unconvert/default.nix | 31 ++++++++++++++++++++
 pkgs/development/tools/unconvert/deps.nix    | 29 ++++++++++++++++++
 pkgs/top-level/all-packages.nix              |  2 ++
 3 files changed, 62 insertions(+)
 create mode 100644 pkgs/development/tools/unconvert/default.nix
 create mode 100644 pkgs/development/tools/unconvert/deps.nix

diff --git a/pkgs/development/tools/unconvert/default.nix b/pkgs/development/tools/unconvert/default.nix
new file mode 100644
index 000000000000..1e81c5b9f86e
--- /dev/null
+++ b/pkgs/development/tools/unconvert/default.nix
@@ -0,0 +1,31 @@
+
+{ buildGoPackage
+, lib
+, fetchFromGitHub
+}:
+
+buildGoPackage rec {
+  name = "unconvert-unstable-${version}";
+  version = "2018-07-03";
+  rev = "1a9a0a0a3594e9363e49545fb6a4e24ac4c68b7b";
+
+  goPackagePath = "github.com/mdempsky/unconvert";
+
+  src = fetchFromGitHub {
+    inherit rev;
+
+    owner = "mdempsky";
+    repo = "unconvert";
+    sha256 = "1ww5qk1cmdis4ig5mb0b0w7nzrf3734s51plmgdxqsr35y88q4p9";
+  };
+
+  goDeps = ./deps.nix;
+
+  meta = with lib; {
+    description = "Remove unnecessary type conversions from Go source";
+    homepage = https://github.com/mdempsky/unconvert;
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.linux ++ platforms.darwin;
+  };
+}
diff --git a/pkgs/development/tools/unconvert/deps.nix b/pkgs/development/tools/unconvert/deps.nix
new file mode 100644
index 000000000000..333ec7ca3b15
--- /dev/null
+++ b/pkgs/development/tools/unconvert/deps.nix
@@ -0,0 +1,29 @@
+[
+  {
+    goPackagePath = "github.com/kisielk/gotool";
+    fetch = {
+      type = "git";
+      url = "https://github.com/kisielk/gotool";
+      rev = "80517062f582ea3340cd4baf70e86d539ae7d84d";
+      sha256 = "14af2pa0ssyp8bp2mvdw184s5wcysk6akil3wzxmr05wwy951iwn";
+    };
+  }
+  {
+    goPackagePath = "golang.org/x/text";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/text";
+      rev = "6f44c5a2ea40ee3593d98cdcc905cc1fdaa660e2";
+      sha256 = "00mwzxly5isgf0glz7k3k2dkyqkjfc4z55qxajx4lgcp3h8xn9xj";
+    };
+  }
+  {
+    goPackagePath = "golang.org/x/tools";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/tools";
+      rev = "96e9e165b75e735822645eff82850b08c377be36";
+      sha256 = "1zj9ck5sg9b0pphxybmvxf64hhcap7v7j37fx3v5aknf18crjjdg";
+    };
+  }
+]
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 50c011729fca..5237133645d9 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -12535,6 +12535,8 @@ with pkgs;
     vala = vala_0_40;
   };
 
+  unconvert = callPackage ../development/tools/unconvert { };
+
   unibilium = callPackage ../development/libraries/unibilium { };
 
   unicap = callPackage ../development/libraries/unicap {};

From fe83c5c3f58636f78635d9ed721816f091e41470 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Fri, 2 Nov 2018 20:49:58 -0700
Subject: [PATCH 0388/1129] goconst: init at 1.1.0

---
 pkgs/development/tools/goconst/default.nix | 27 ++++++++++++++++++++++
 pkgs/top-level/all-packages.nix            |  2 ++
 2 files changed, 29 insertions(+)
 create mode 100644 pkgs/development/tools/goconst/default.nix

diff --git a/pkgs/development/tools/goconst/default.nix b/pkgs/development/tools/goconst/default.nix
new file mode 100644
index 000000000000..9ef94ffdc7fa
--- /dev/null
+++ b/pkgs/development/tools/goconst/default.nix
@@ -0,0 +1,27 @@
+{ buildGoPackage
+, lib
+, fetchFromGitHub
+}:
+
+buildGoPackage rec {
+  name = "goconst-${version}";
+  version = "1.1.0";
+
+  goPackagePath = "github.com/jgautheron/goconst";
+  excludedPackages = ''testdata'';
+
+  src = fetchFromGitHub {
+    owner = "jgautheron";
+    repo = "goconst";
+    rev = version;
+    sha256 = "0zhscvv9w54q1h2vs8xx3qkz98cf36qhxjvdq0xyz3qvn4vhnyw6";
+  };
+
+  meta = with lib; {
+    description = "Find in Go repeated strings that could be replaced by a constant";
+    homepage = https://github.com/jgautheron/goconst;
+    license = licenses.mit;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.linux ++ platforms.darwin;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 5237133645d9..9e52f8d1b2f9 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -14727,6 +14727,8 @@ with pkgs;
 
   gocode = callPackage ../development/tools/gocode { };
 
+  goconst = callPackage ../development/tools/goconst { };
+
   goconvey = callPackage ../development/tools/goconvey { };
 
   gotags = callPackage ../development/tools/gotags { };

From f10fcf202bf2acac2d276b0689b932babe8998bf Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Fri, 2 Nov 2018 21:01:49 -0700
Subject: [PATCH 0389/1129] go-check: init unstable at 2018-09-12

---
 pkgs/development/tools/check/default.nix | 30 ++++++++++++++++++++++++
 pkgs/development/tools/check/deps.nix    | 11 +++++++++
 pkgs/top-level/all-packages.nix          |  2 ++
 3 files changed, 43 insertions(+)
 create mode 100644 pkgs/development/tools/check/default.nix
 create mode 100644 pkgs/development/tools/check/deps.nix

diff --git a/pkgs/development/tools/check/default.nix b/pkgs/development/tools/check/default.nix
new file mode 100644
index 000000000000..dfa164e6755c
--- /dev/null
+++ b/pkgs/development/tools/check/default.nix
@@ -0,0 +1,30 @@
+{ buildGoPackage
+, lib
+, fetchFromGitLab
+}:
+
+buildGoPackage rec {
+  name = "check-unstable-${version}";
+  version = "2018-09-12";
+  rev = "88db195993f8e991ad402754accd0635490769f9";
+
+  goPackagePath = "gitlab.com/opennota/check";
+
+  src = fetchFromGitLab {
+    inherit rev;
+
+    owner = "opennota";
+    repo = "check";
+    sha256 = "1983xmdkgpqda4qz8ashc6xv1zg5jl4zly3w566grxc5sfxpgf0i";
+  };
+
+  goDeps = ./deps.nix;
+
+  meta = with lib; {
+    description = "A set of utilities for checking Go sources.";
+    homepage = https://gitlab.com/opennota/check;
+    license = licenses.gpl3;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.linux ++ platforms.darwin;
+  };
+}
diff --git a/pkgs/development/tools/check/deps.nix b/pkgs/development/tools/check/deps.nix
new file mode 100644
index 000000000000..b9c50d95d117
--- /dev/null
+++ b/pkgs/development/tools/check/deps.nix
@@ -0,0 +1,11 @@
+[
+  {
+    goPackagePath = "golang.org/x/tools";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/tools";
+      rev = "677d2ff680c1";
+      sha256 = "0vp1w1haqcjd82dxd6x9xrllbfwvm957rxwkpji96cgvhsli2bq5";
+    };
+  }
+]
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 9e52f8d1b2f9..784823d9be64 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -659,6 +659,8 @@ with pkgs;
 
   cconv = callPackage ../tools/text/cconv { };
 
+  go-check = callPackage ../development/tools/check { };
+
   chkcrontab = callPackage ../tools/admin/chkcrontab { };
 
   cozy = callPackage ../applications/audio/cozy-audiobooks { };

From 1efe4d900593f0a34bbd2b32d34071d965fdfd06 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Fri, 2 Nov 2018 21:08:19 -0700
Subject: [PATCH 0390/1129] gocyclo: init unstable at 2015-02-08

---
 pkgs/development/tools/gocyclo/default.nix | 28 ++++++++++++++++++++++
 pkgs/top-level/all-packages.nix            |  2 ++
 2 files changed, 30 insertions(+)
 create mode 100644 pkgs/development/tools/gocyclo/default.nix

diff --git a/pkgs/development/tools/gocyclo/default.nix b/pkgs/development/tools/gocyclo/default.nix
new file mode 100644
index 000000000000..91ebaff803eb
--- /dev/null
+++ b/pkgs/development/tools/gocyclo/default.nix
@@ -0,0 +1,28 @@
+{ buildGoPackage
+, lib
+, fetchFromGitHub
+}:
+
+buildGoPackage rec {
+  name = "gocyclo-unstable-${version}";
+  version = "2015-02-08";
+  rev = "aa8f8b160214d8dfccfe3e17e578dd0fcc6fede7";
+
+  goPackagePath = "github.com/alecthomas/gocyclo";
+
+  src = fetchFromGitHub {
+    inherit rev;
+
+    owner = "alecthomas";
+    repo = "gocyclo";
+    sha256 = "094rj97q38j53lmn2scshrg8kws8c542yq5apih1ahm9wdkv8pxr";
+  };
+
+  meta = with lib; {
+    description = "Calculate cyclomatic complexities of functions in Go source code.";
+    homepage = https://github.com/alecthomas/gocyclo;
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.linux ++ platforms.darwin;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 784823d9be64..4aeb27bd8d7e 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -14739,6 +14739,8 @@ with pkgs;
 
   golangci-lint = callPackage ../development/tools/golangci-lint { };
 
+  gocyclo = callPackage ../development/tools/gocyclo { };
+
   godef = callPackage ../development/tools/godef { };
 
   gopkgs = callPackage ../development/tools/gopkgs { };

From ed31a46727b3fca8ed6a4ff5416fad9026cdc9b4 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Fri, 2 Nov 2018 21:22:07 -0700
Subject: [PATCH 0391/1129] interfacer: init at unstable 2018-08-31

---
 pkgs/development/tools/interfacer/default.nix | 31 +++++++++++++++++++
 pkgs/development/tools/interfacer/deps.nix    | 29 +++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 3 files changed, 62 insertions(+)
 create mode 100644 pkgs/development/tools/interfacer/default.nix
 create mode 100644 pkgs/development/tools/interfacer/deps.nix

diff --git a/pkgs/development/tools/interfacer/default.nix b/pkgs/development/tools/interfacer/default.nix
new file mode 100644
index 000000000000..274ced0b37cd
--- /dev/null
+++ b/pkgs/development/tools/interfacer/default.nix
@@ -0,0 +1,31 @@
+{ buildGoPackage
+, lib
+, fetchFromGitHub
+}:
+
+buildGoPackage rec {
+  name = "interfacer-unstable-${version}";
+  version = "2018-08-31";
+  rev = "c20040233aedb03da82d460eca6130fcd91c629a";
+
+  goPackagePath = "mvdan.cc/interfacer";
+  excludedPackages = ''check/testdata'';
+
+  src = fetchFromGitHub {
+    inherit rev;
+
+    owner = "mvdan";
+    repo = "interfacer";
+    sha256 = "0cx4m74mvn200360pmsqxx4z0apk9fcknwwqh8r94zd3jfv4akq2";
+  };
+
+  goDeps = ./deps.nix;
+
+  meta = with lib; {
+    description = "A linter that suggests interface types.";
+    homepage = https://github.com/mvdan/interfacer;
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.linux ++ platforms.darwin;
+  };
+}
diff --git a/pkgs/development/tools/interfacer/deps.nix b/pkgs/development/tools/interfacer/deps.nix
new file mode 100644
index 000000000000..6810950878be
--- /dev/null
+++ b/pkgs/development/tools/interfacer/deps.nix
@@ -0,0 +1,29 @@
+[
+  {
+    goPackagePath = "github.com/kisielk/gotool";
+    fetch = {
+      type = "git";
+      url = "https://github.com/kisielk/gotool";
+      rev = "80517062f582ea3340cd4baf70e86d539ae7d84d";
+      sha256 = "14af2pa0ssyp8bp2mvdw184s5wcysk6akil3wzxmr05wwy951iwn";
+    };
+  }
+  {
+    goPackagePath = "golang.org/x/tools";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/tools";
+      rev = "96e9e165b75e735822645eff82850b08c377be36";
+      sha256 = "1zj9ck5sg9b0pphxybmvxf64hhcap7v7j37fx3v5aknf18crjjdg";
+    };
+  }
+  {
+    goPackagePath = "mvdan.cc/lint";
+    fetch = {
+      type = "git";
+      url = "https://github.com/mvdan/lint";
+      rev = "adc824a0674b99099789b6188a058d485eaf61c0";
+      sha256 = "17mi2rvkg9kzv1shxcyawzcj4jj3v738d1j82fp4yygx859yvr8r";
+    };
+  }
+]
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 4aeb27bd8d7e..b665ea1d393c 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -15526,6 +15526,8 @@ with pkgs;
 
   hasklig = callPackage ../data/fonts/hasklig {};
 
+  interfacer = callPackage ../development/tools/interfacer { };
+
   inter-ui = callPackage ../data/fonts/inter-ui { };
 
   siji = callPackage ../data/fonts/siji { };

From cfa5c7f89674e4d5505050dda54a73574ca2f294 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Fri, 2 Nov 2018 21:30:19 -0700
Subject: [PATCH 0392/1129] maligned: init unstable at 2018-07-07

---
 pkgs/development/tools/maligned/default.nix | 30 +++++++++++++++++++++
 pkgs/development/tools/maligned/deps.nix    | 20 ++++++++++++++
 pkgs/top-level/all-packages.nix             |  2 ++
 3 files changed, 52 insertions(+)
 create mode 100644 pkgs/development/tools/maligned/default.nix
 create mode 100644 pkgs/development/tools/maligned/deps.nix

diff --git a/pkgs/development/tools/maligned/default.nix b/pkgs/development/tools/maligned/default.nix
new file mode 100644
index 000000000000..7e5cbaddd8b3
--- /dev/null
+++ b/pkgs/development/tools/maligned/default.nix
@@ -0,0 +1,30 @@
+{ buildGoPackage
+, lib
+, fetchFromGitHub
+}:
+
+buildGoPackage rec {
+  name = "maligned-unstable-${version}";
+  version = "2018-07-07";
+  rev = "6e39bd26a8c8b58c5a22129593044655a9e25959";
+
+  goPackagePath = "github.com/mdempsky/maligned";
+
+  src = fetchFromGitHub {
+    inherit rev;
+
+    owner = "mdempsky";
+    repo = "maligned";
+    sha256 = "08inr5xjqv9flrlyhqd8ck1q26y5xb6iilz0xkb6bqa4dl5ialhi";
+  };
+
+  goDeps = ./deps.nix;
+
+  meta = with lib; {
+    description = "Tool to detect Go structs that would take less memory if their fields were sorted.";
+    homepage = https://github.com/mdempsky/maligned;
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.linux ++ platforms.darwin;
+  };
+}
diff --git a/pkgs/development/tools/maligned/deps.nix b/pkgs/development/tools/maligned/deps.nix
new file mode 100644
index 000000000000..afe5e50e47bd
--- /dev/null
+++ b/pkgs/development/tools/maligned/deps.nix
@@ -0,0 +1,20 @@
+[
+  {
+    goPackagePath = "github.com/kisielk/gotool";
+    fetch = {
+      type = "git";
+      url = "https://github.com/kisielk/gotool";
+      rev = "80517062f582ea3340cd4baf70e86d539ae7d84d";
+      sha256 = "14af2pa0ssyp8bp2mvdw184s5wcysk6akil3wzxmr05wwy951iwn";
+    };
+  }
+  {
+    goPackagePath = "golang.org/x/tools";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/tools";
+      rev = "96e9e165b75e735822645eff82850b08c377be36";
+      sha256 = "1zj9ck5sg9b0pphxybmvxf64hhcap7v7j37fx3v5aknf18crjjdg";
+    };
+  }
+]
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index b665ea1d393c..d358f043e380 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -15528,6 +15528,8 @@ with pkgs;
 
   interfacer = callPackage ../development/tools/interfacer { };
 
+  maligned = callPackage ../development/tools/maligned { };
+
   inter-ui = callPackage ../data/fonts/inter-ui { };
 
   siji = callPackage ../data/fonts/siji { };

From a1faa70368d8163acda30d06ad9e9f1a327ac52d Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Fri, 2 Nov 2018 21:38:41 -0700
Subject: [PATCH 0393/1129] gosec: init at 1.1.0

---
 pkgs/development/tools/gosec/default.nix |  29 ++++
 pkgs/development/tools/gosec/deps.nix    | 193 +++++++++++++++++++++++
 pkgs/top-level/all-packages.nix          |   2 +
 3 files changed, 224 insertions(+)
 create mode 100644 pkgs/development/tools/gosec/default.nix
 create mode 100644 pkgs/development/tools/gosec/deps.nix

diff --git a/pkgs/development/tools/gosec/default.nix b/pkgs/development/tools/gosec/default.nix
new file mode 100644
index 000000000000..2cffd86f3965
--- /dev/null
+++ b/pkgs/development/tools/gosec/default.nix
@@ -0,0 +1,29 @@
+{ buildGoPackage
+, lib
+, fetchFromGitHub
+}:
+
+buildGoPackage rec {
+  name = "gosec-${version}";
+  version = "1.1.0";
+
+  goPackagePath = "github.com/securego/gosec";
+  excludedPackages = ''cmd/tlsconfig'';
+
+  src = fetchFromGitHub {
+    owner = "securego";
+    repo = "gosec";
+    rev = "${version}";
+    sha256 = "0vjn3g6w4y4ayx0g766jp31vb78cipl90fcg0mccjr0a539qrpy6";
+  };
+
+  goDeps = ./deps.nix;
+
+  meta = with lib; {
+    description = "Golang security checker";
+    homepage = https://github.com/securego/gosec;
+    license = licenses.asl20 ;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.linux ++ platforms.darwin;
+  };
+}
diff --git a/pkgs/development/tools/gosec/deps.nix b/pkgs/development/tools/gosec/deps.nix
new file mode 100644
index 000000000000..80a77e7fb807
--- /dev/null
+++ b/pkgs/development/tools/gosec/deps.nix
@@ -0,0 +1,193 @@
+# file generated from go.mod using vgo2nix (https://github.com/adisbladis/vgo2nix)
+[
+
+  {
+    goPackagePath = "github.com/davecgh/go-spew";
+    fetch = {
+      type = "git";
+      url = "https://github.com/davecgh/go-spew";
+      rev = "v1.1.1";
+      sha256 = "0hka6hmyvp701adzag2g26cxdj47g21x6jz4sc6jjz1mn59d474y";
+    };
+  }
+
+  {
+    goPackagePath = "github.com/golang/protobuf";
+    fetch = {
+      type = "git";
+      url = "https://github.com/golang/protobuf";
+      rev = "v1.2.0";
+      sha256 = "0kf4b59rcbb1cchfny2dm9jyznp8ri2hsb14n8iak1q8986xa0ab";
+    };
+  }
+
+  {
+    goPackagePath = "github.com/kisielk/gotool";
+    fetch = {
+      type = "git";
+      url = "https://github.com/kisielk/gotool";
+      rev = "0de1eaf82fa3";
+      sha256 = "177af7bjq6clmkqshnmnwlpwvx80kpi2277q275iwq59lp48viq1";
+    };
+  }
+
+  {
+    goPackagePath = "github.com/kr/pretty";
+    fetch = {
+      type = "git";
+      url = "https://github.com/kr/pretty";
+      rev = "v0.1.0";
+      sha256 = "18m4pwg2abd0j9cn5v3k2ksk9ig4vlwxmlw9rrglanziv9l967qp";
+    };
+  }
+
+  {
+    goPackagePath = "github.com/kr/pty";
+    fetch = {
+      type = "git";
+      url = "https://github.com/kr/pty";
+      rev = "v1.1.1";
+      sha256 = "0383f0mb9kqjvncqrfpidsf8y6ns5zlrc91c6a74xpyxjwvzl2y6";
+    };
+  }
+
+  {
+    goPackagePath = "github.com/kr/text";
+    fetch = {
+      type = "git";
+      url = "https://github.com/kr/text";
+      rev = "v0.1.0";
+      sha256 = "1gm5bsl01apvc84bw06hasawyqm4q84vx1pm32wr9jnd7a8vjgj1";
+    };
+  }
+
+  {
+    goPackagePath = "github.com/nbutton23/zxcvbn-go";
+    fetch = {
+      type = "git";
+      url = "https://github.com/nbutton23/zxcvbn-go";
+      rev = "a22cb81b2ecd";
+      sha256 = "0hm16vc7xrw0cqla6xcn59bb7n2sa0j8rkniywn5dqnbrpza12cd";
+    };
+  }
+
+  {
+    goPackagePath = "github.com/onsi/ginkgo";
+    fetch = {
+      type = "git";
+      url = "https://github.com/onsi/ginkgo";
+      rev = "11459a886d9c";
+      sha256 = "1nswc1fnrrs792qbix05h91bilj8rr3wxmxgwi97p2gjk0r292zh";
+    };
+  }
+
+  {
+    goPackagePath = "github.com/onsi/gomega";
+    fetch = {
+      type = "git";
+      url = "https://github.com/onsi/gomega";
+      rev = "dcabb60a477c";
+      sha256 = "1775lv5jbsgv3ghq5v2827slqlhqdadrzc1nkpq4y0hdv2qzrgkm";
+    };
+  }
+
+  {
+    goPackagePath = "github.com/pmezard/go-difflib";
+    fetch = {
+      type = "git";
+      url = "https://github.com/pmezard/go-difflib";
+      rev = "v1.0.0";
+      sha256 = "0c1cn55m4rypmscgf0rrb88pn58j3ysvc2d0432dp3c6fqg6cnzw";
+    };
+  }
+
+  {
+    goPackagePath = "github.com/ryanuber/go-glob";
+    fetch = {
+      type = "git";
+      url = "https://github.com/ryanuber/go-glob";
+      rev = "256dc444b735";
+      sha256 = "07rsd7hranghwc68ib0r2zxd9d5djanzjvd84j9dgj3wqsyg5mi2";
+    };
+  }
+
+  {
+    goPackagePath = "github.com/stretchr/testify";
+    fetch = {
+      type = "git";
+      url = "https://github.com/stretchr/testify";
+      rev = "v1.2.2";
+      sha256 = "0dlszlshlxbmmfxj5hlwgv3r22x0y1af45gn1vd198nvvs3pnvfs";
+    };
+  }
+
+  {
+    goPackagePath = "golang.org/x/net";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/net";
+      rev = "8351a756f30f";
+      sha256 = "0b6m579i3wrx1m69mqkdng5gjfssprxx0pg45kzrdi68sh0zr5d1";
+    };
+  }
+
+  {
+    goPackagePath = "golang.org/x/sync";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/sync";
+      rev = "1d60e4601c6f";
+      sha256 = "046jlanz2lkxq1r57x9bl6s4cvfqaic6p2xybsj8mq1120jv4rs6";
+    };
+  }
+
+  {
+    goPackagePath = "golang.org/x/sys";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/sys";
+      rev = "164713f0dfce";
+      sha256 = "1qn9vvyqsaaj0az0rbilzc4pfv9sl4vh78c2g37yya5gcdnarh3w";
+    };
+  }
+
+  {
+    goPackagePath = "golang.org/x/text";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/text";
+      rev = "1cbadb444a80";
+      sha256 = "0ih9ysagh4ylj08393497sscf3yziybc6acg4mrh0wa7mld75j56";
+    };
+  }
+
+  {
+    goPackagePath = "golang.org/x/tools";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/tools";
+      rev = "e531a2a1c15f";
+      sha256 = "0740w56nmjqdj7ld1h3gpcpi3x8n81bdx0pp267rz9hmwkrb2s1c";
+    };
+  }
+
+  {
+    goPackagePath = "gopkg.in/check.v1";
+    fetch = {
+      type = "git";
+      url = "https://gopkg.in/check.v1";
+      rev = "788fd7840127";
+      sha256 = "0v3bim0j375z81zrpr5qv42knqs0y2qv2vkjiqi5axvb78slki1a";
+    };
+  }
+
+  {
+    goPackagePath = "gopkg.in/yaml.v2";
+    fetch = {
+      type = "git";
+      url = "https://gopkg.in/yaml.v2";
+      rev = "eb3733d160e7";
+      sha256 = "1srhvcaa9db3a6xj29mkjr5kg33y71pclrlx4vcwz5m1lgb5c7q6";
+    };
+  }
+]
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index d358f043e380..4026889d21e6 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -14745,6 +14745,8 @@ with pkgs;
 
   gopkgs = callPackage ../development/tools/gopkgs { };
 
+  gosec = callPackage ../development/tools/gosec { };
+
   govers = callPackage ../development/tools/govers { };
 
   govendor = callPackage ../development/tools/govendor { };

From 6a09bfc8bc57b1635467f94b0afc652d838d37fc Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Fri, 2 Nov 2018 21:39:36 -0700
Subject: [PATCH 0394/1129] gometalinter: init at 2.0.11

---
 .../tools/gometalinter/default.nix            | 70 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 2 files changed, 72 insertions(+)
 create mode 100644 pkgs/development/tools/gometalinter/default.nix

diff --git a/pkgs/development/tools/gometalinter/default.nix b/pkgs/development/tools/gometalinter/default.nix
new file mode 100644
index 000000000000..cce678e9d073
--- /dev/null
+++ b/pkgs/development/tools/gometalinter/default.nix
@@ -0,0 +1,70 @@
+{ buildGoPackage
+, deadcode
+, errcheck
+, fetchFromGitHub
+, go
+, go-check
+, go-tools
+, goconst
+, gocyclo
+, golint
+, gosec
+, gotools
+, ineffassign
+, maligned
+, interfacer
+, lib
+, makeWrapper
+, unconvert
+}:
+
+with lib;
+
+let
+  runtimeDeps = [
+    deadcode
+    errcheck
+    go
+    go-check
+    go-tools
+    goconst
+    gocyclo
+    golint
+    gosec
+    gotools
+    ineffassign
+    interfacer
+    maligned
+    unconvert
+  ];
+
+in buildGoPackage rec {
+  name = "gometalinter-${version}";
+  version = "2.0.11";
+
+  goPackagePath = "github.com/alecthomas/gometalinter";
+  excludedPackages = "\\(regressiontests\\)";
+
+  src = fetchFromGitHub {
+    owner = "alecthomas";
+    repo = "gometalinter";
+    rev = "v${version}";
+    sha256 = "08p7bwvhpgizif8qi59m8mm3mcny70x9msbk8m8vjpphsq55wha4";
+  };
+
+  postInstall = ''
+    wrapProgram $bin/bin/gometalinter --prefix PATH : "${makeBinPath runtimeDeps}"
+  '';
+
+  buildInputs = [ makeWrapper ];
+
+  allowGoReference = true;
+
+  meta = with lib; {
+    description = "Concurrently run Go lint tools and normalise their output";
+    homepage = https://github.com/alecthomas/gometalinter;
+    license = licenses.mit;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.linux ++ platforms.darwin;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 4026889d21e6..79940d958a99 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -6955,6 +6955,8 @@ with pkgs;
 
   gogetdoc = callPackage ../development/tools/gogetdoc { };
 
+  gometalinter = callPackage ../development/tools/gometalinter { };
+
   gox = callPackage ../development/tools/gox { };
 
   gprolog = callPackage ../development/compilers/gprolog { };

From fce50a78806550974ddb4b402e72f4a00129fc96 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Fri, 2 Nov 2018 21:47:38 -0700
Subject: [PATCH 0395/1129] impl: init unstable at 2018-02-27

---
 pkgs/development/tools/impl/default.nix | 30 +++++++++++++++++++++++++
 pkgs/development/tools/impl/deps.nix    | 11 +++++++++
 pkgs/top-level/all-packages.nix         |  2 ++
 3 files changed, 43 insertions(+)
 create mode 100644 pkgs/development/tools/impl/default.nix
 create mode 100644 pkgs/development/tools/impl/deps.nix

diff --git a/pkgs/development/tools/impl/default.nix b/pkgs/development/tools/impl/default.nix
new file mode 100644
index 000000000000..69bbf8afe5ac
--- /dev/null
+++ b/pkgs/development/tools/impl/default.nix
@@ -0,0 +1,30 @@
+{ buildGoPackage
+, lib
+, fetchFromGitHub
+}:
+
+buildGoPackage rec {
+  name = "impl-unstable-${version}";
+  version = "2018-02-27";
+  rev = "3d0f908298c49598b6aa84f101c69670e15d1d03";
+
+  goPackagePath = "github.com/josharian/impl";
+
+  src = fetchFromGitHub {
+    inherit rev;
+
+    owner = "josharian";
+    repo = "impl";
+    sha256 = "0xpip20x5vclrl0by1760lg73v6lj6nmkbiazlskyvpkw44h8a7c";
+  };
+
+  goDeps = ./deps.nix;
+
+  meta = with lib; {
+    description = "impl generates method stubs for implementing an interface.";
+    homepage = https://github.com/josharian/impl;
+    license = licenses.mit;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.linux ++ platforms.darwin;
+  };
+}
diff --git a/pkgs/development/tools/impl/deps.nix b/pkgs/development/tools/impl/deps.nix
new file mode 100644
index 000000000000..3477aaed6075
--- /dev/null
+++ b/pkgs/development/tools/impl/deps.nix
@@ -0,0 +1,11 @@
+[
+  {
+    goPackagePath = "golang.org/x/tools";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/tools";
+      rev = "96e9e165b75e735822645eff82850b08c377be36";
+      sha256 = "1zj9ck5sg9b0pphxybmvxf64hhcap7v7j37fx3v5aknf18crjjdg";
+    };
+  }
+]
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 79940d958a99..d9ddee1454f9 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -14767,6 +14767,8 @@ with pkgs;
 
   gotests = callPackage ../development/tools/gotests { };
 
+  impl = callPackage ../development/tools/impl { };
+
   quicktemplate = callPackage ../development/tools/quicktemplate { };
 
   gogoclient = callPackage ../os-specific/linux/gogoclient { };

From e2355c697335af7a8e132e6acf440418f79dd9e6 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Fri, 2 Nov 2018 21:52:22 -0700
Subject: [PATCH 0396/1129] iferr: init unstable at 2018-06-15

---
 pkgs/development/tools/iferr/default.nix | 28 ++++++++++++++++++++++++
 pkgs/top-level/all-packages.nix          |  3 ++-
 2 files changed, 30 insertions(+), 1 deletion(-)
 create mode 100644 pkgs/development/tools/iferr/default.nix

diff --git a/pkgs/development/tools/iferr/default.nix b/pkgs/development/tools/iferr/default.nix
new file mode 100644
index 000000000000..e2aebe9b2dc2
--- /dev/null
+++ b/pkgs/development/tools/iferr/default.nix
@@ -0,0 +1,28 @@
+{ buildGoPackage
+, lib
+, fetchFromGitHub
+}:
+
+buildGoPackage rec {
+  name = "iferr-unstable-${version}";
+  version = "2018-06-15";
+  rev = "bb332a3b1d9129b6486c7ddcb7030c11b05cfc88";
+
+  goPackagePath = "github.com/koron/iferr";
+
+  src = fetchFromGitHub {
+    inherit rev;
+
+    owner = "koron";
+    repo = "iferr";
+    sha256 = "1nyqy1sgq2afiama4wy7wap8s03c0hiwwa0f6kwq3y59097rfc0c";
+  };
+
+  meta = with lib; {
+    description = ''Generate "if err != nil {" block'';
+    homepage = https://github.com/koron/iferr;
+    license = licenses.mit;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.linux ++ platforms.darwin;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index d9ddee1454f9..536cb68dd17d 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -14718,13 +14718,14 @@ with pkgs;
 
   easyjson = callPackage ../development/tools/easyjson { };
 
+  iferr = callPackage ../development/tools/iferr { };
+
   go-bindata = callPackage ../development/tools/go-bindata { };
 
   go-bindata-assetfs = callPackage ../development/tools/go-bindata-assetfs { };
 
   go-protobuf = callPackage ../development/tools/go-protobuf { };
 
-
   go-symbols = callPackage ../development/tools/go-symbols { };
 
   go-outline = callPackage ../development/tools/go-outline { };

From e09e5297d3cf26472ebb2b4fd80cec2eb56f0f15 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Wed, 31 Oct 2018 10:46:59 -0700
Subject: [PATCH 0397/1129] vim-plugins: vim-go: provide the binaries required
 for the plugin to be functional

---
 pkgs/misc/vim-plugins/overrides.nix | 34 +++++++++++++++++++++++++++++
 1 file changed, 34 insertions(+)

diff --git a/pkgs/misc/vim-plugins/overrides.nix b/pkgs/misc/vim-plugins/overrides.nix
index 6b8bf42c795f..6b1fd423a0ac 100644
--- a/pkgs/misc/vim-plugins/overrides.nix
+++ b/pkgs/misc/vim-plugins/overrides.nix
@@ -9,6 +9,12 @@
 , languagetool
 , Cocoa, CoreFoundation, CoreServices
 , buildVimPluginFrom2Nix
+
+# vim-go denpencies
+, asmfmt, delve, errcheck, godef, golint
+, gomodifytags, gotags, gotools, motion
+, gnused, reftools, gogetdoc, gometalinter
+, impl, iferr
 }:
 
 let
@@ -247,6 +253,34 @@ with generated;
     dependencies = ["vim-misc"];
   });
 
+  # change the go_bin_path to point to a path in the nix store. See the code in
+  # fatih/vim-go here
+  # https://github.com/fatih/vim-go/blob/155836d47052ea9c9bac81ba3e937f6f22c8e384/autoload/go/path.vim#L154-L159
+  vim-go = vim-go.overrideAttrs(old: let
+    binPath = lib.makeBinPath [
+      asmfmt
+      delve
+      errcheck
+      godef
+      gogetdoc
+      golint
+      gometalinter
+      gomodifytags
+      gotags
+      gotools
+      iferr
+      impl
+      motion
+      reftools
+    ];
+    in {
+    postPatch = ''
+      ${gnused}/bin/sed \
+        -Ee 's@let go_bin_path = go#path#BinPath\(\)@let go_bin_path = "${binPath}"@g' \
+        -i autoload/go/path.vim
+    '';
+  });
+
   vim-grammarous = vim-grammarous.overrideAttrs(old: {
     # use `:GrammarousCheck` to initialize checking
     # In neovim, you also want to use set

From 08b5cffe878bcc7ea230043332db53a0ef8d2758 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Sat, 3 Nov 2018 00:47:39 -0500
Subject: [PATCH 0398/1129] Revert "stage.nix: pkgsi686Linux only works on x86
 family"

This reverts commit 78ca6d885ffbeba8b2cfe1fe68c3980e74fd4e5d.

Broke eval on aarch64
---
 pkgs/top-level/stage.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/top-level/stage.nix b/pkgs/top-level/stage.nix
index f838d707b0c0..37724a870a30 100644
--- a/pkgs/top-level/stage.nix
+++ b/pkgs/top-level/stage.nix
@@ -150,7 +150,7 @@ let
 
     # All packages built for i686 Linux.
     # Used by wine, firefox with debugging version of Flash, ...
-    pkgsi686Linux = assert stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isx86; nixpkgsFun {
+    pkgsi686Linux = assert stdenv.hostPlatform.isLinux; nixpkgsFun {
       inherit overlays config;
       ${if stdenv.hostPlatform == stdenv.buildPlatform
         then "localSystem" else "crossSystem"} = {

From b3ab4d1f8e6fc6897fe561039b14d360fe8164f8 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Sat, 3 Nov 2018 00:52:14 -0500
Subject: [PATCH 0399/1129] Revert "Revert "stage.nix: pkgsi686Linux only works
 on x86 family""

This reverts commit 08b5cffe878bcc7ea230043332db53a0ef8d2758.
---
 pkgs/top-level/stage.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/top-level/stage.nix b/pkgs/top-level/stage.nix
index 37724a870a30..f838d707b0c0 100644
--- a/pkgs/top-level/stage.nix
+++ b/pkgs/top-level/stage.nix
@@ -150,7 +150,7 @@ let
 
     # All packages built for i686 Linux.
     # Used by wine, firefox with debugging version of Flash, ...
-    pkgsi686Linux = assert stdenv.hostPlatform.isLinux; nixpkgsFun {
+    pkgsi686Linux = assert stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isx86; nixpkgsFun {
       inherit overlays config;
       ${if stdenv.hostPlatform == stdenv.buildPlatform
         then "localSystem" else "crossSystem"} = {

From 4a8fc5b9aaa486e6bd5f81a60c3def4be675b4ed Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Sat, 3 Nov 2018 00:55:57 -0500
Subject: [PATCH 0400/1129] treewide: remove pkgs_i686

This was getting evaluated eagerly causing assertion failures in
aarch64 systems. We can replace usages of pkgs_i686 with
pkgs.pkgsi686Linux.
---
 nixos/modules/config/pulseaudio.nix              | 8 ++++----
 nixos/modules/hardware/opengl.nix                | 4 ++--
 nixos/modules/hardware/video/amdgpu-pro.nix      | 4 ++--
 nixos/modules/hardware/video/ati.nix             | 4 ++--
 nixos/modules/hardware/video/nvidia.nix          | 4 ++--
 nixos/modules/misc/nixpkgs.nix                   | 1 -
 nixos/modules/virtualisation/parallels-guest.nix | 4 ++--
 7 files changed, 14 insertions(+), 15 deletions(-)

diff --git a/nixos/modules/config/pulseaudio.nix b/nixos/modules/config/pulseaudio.nix
index d4aa59506295..67f7105fe2fe 100644
--- a/nixos/modules/config/pulseaudio.nix
+++ b/nixos/modules/config/pulseaudio.nix
@@ -1,4 +1,4 @@
-{ config, lib, pkgs, pkgs_i686, ... }:
+{ config, lib, pkgs, ... }:
 
 with pkgs;
 with lib;
@@ -19,7 +19,7 @@ let
 
   # Forces 32bit pulseaudio and alsaPlugins to be built/supported for apps
   # using 32bit alsa on 64bit linux.
-  enable32BitAlsaPlugins = cfg.support32Bit && stdenv.isx86_64 && (pkgs_i686.alsaLib != null && pkgs_i686.libpulseaudio != null);
+  enable32BitAlsaPlugins = cfg.support32Bit && stdenv.isx86_64 && (pkgs.pkgsi686Linux.alsaLib != null && pkgs.pkgsi686Linux.libpulseaudio != null);
 
 
   myConfigFile =
@@ -63,7 +63,7 @@ let
     pcm_type.pulse {
       libs.native = ${pkgs.alsaPlugins}/lib/alsa-lib/libasound_module_pcm_pulse.so ;
       ${lib.optionalString enable32BitAlsaPlugins
-     "libs.32Bit = ${pkgs_i686.alsaPlugins}/lib/alsa-lib/libasound_module_pcm_pulse.so ;"}
+     "libs.32Bit = ${pkgs.pkgsi686Linux.alsaPlugins}/lib/alsa-lib/libasound_module_pcm_pulse.so ;"}
     }
     pcm.!default {
       type pulse
@@ -72,7 +72,7 @@ let
     ctl_type.pulse {
       libs.native = ${pkgs.alsaPlugins}/lib/alsa-lib/libasound_module_ctl_pulse.so ;
       ${lib.optionalString enable32BitAlsaPlugins
-     "libs.32Bit = ${pkgs_i686.alsaPlugins}/lib/alsa-lib/libasound_module_ctl_pulse.so ;"}
+     "libs.32Bit = ${pkgs.pkgsi686Linux.alsaPlugins}/lib/alsa-lib/libasound_module_ctl_pulse.so ;"}
     }
     ctl.!default {
       type pulse
diff --git a/nixos/modules/hardware/opengl.nix b/nixos/modules/hardware/opengl.nix
index 46d06d71333a..48e0072e0892 100644
--- a/nixos/modules/hardware/opengl.nix
+++ b/nixos/modules/hardware/opengl.nix
@@ -1,4 +1,4 @@
-{ config, lib, pkgs, pkgs_i686, ... }:
+{ config, lib, pkgs, ... }:
 
 with lib;
 
@@ -148,7 +148,7 @@ in
       [ "/run/opengl-driver/share" ] ++ optional cfg.driSupport32Bit "/run/opengl-driver-32/share";
 
     hardware.opengl.package = mkDefault (makePackage pkgs);
-    hardware.opengl.package32 = mkDefault (makePackage pkgs_i686);
+    hardware.opengl.package32 = mkDefault (makePackage pkgs.pkgsi686Linux);
 
     boot.extraModulePackages = optional (elem "virtualbox" videoDrivers) kernelPackages.virtualboxGuestAdditions;
   };
diff --git a/nixos/modules/hardware/video/amdgpu-pro.nix b/nixos/modules/hardware/video/amdgpu-pro.nix
index 50af022b93c8..ab9e0c92020e 100644
--- a/nixos/modules/hardware/video/amdgpu-pro.nix
+++ b/nixos/modules/hardware/video/amdgpu-pro.nix
@@ -1,6 +1,6 @@
 # This module provides the proprietary AMDGPU-PRO drivers.
 
-{ config, lib, pkgs, pkgs_i686, ... }:
+{ config, lib, pkgs, ... }:
 
 with lib;
 
@@ -11,7 +11,7 @@ let
   enabled = elem "amdgpu-pro" drivers;
 
   package = config.boot.kernelPackages.amdgpu-pro;
-  package32 = pkgs_i686.linuxPackages.amdgpu-pro.override { libsOnly = true; kernel = null; };
+  package32 = pkgs.pkgsi686Linux.linuxPackages.amdgpu-pro.override { libsOnly = true; kernel = null; };
 
   opengl = config.hardware.opengl;
 
diff --git a/nixos/modules/hardware/video/ati.nix b/nixos/modules/hardware/video/ati.nix
index 2fa37af6ca58..6102919f0155 100644
--- a/nixos/modules/hardware/video/ati.nix
+++ b/nixos/modules/hardware/video/ati.nix
@@ -1,6 +1,6 @@
 # This module provides the proprietary ATI X11 / OpenGL drivers.
 
-{ config, lib, pkgs_i686, ... }:
+{ config, lib, pkgs, ... }:
 
 with lib;
 
@@ -24,7 +24,7 @@ in
       { name = "fglrx"; modules = [ ati_x11 ]; libPath = [ "${ati_x11}/lib" ]; };
 
     hardware.opengl.package = ati_x11;
-    hardware.opengl.package32 = pkgs_i686.linuxPackages.ati_drivers_x11.override { libsOnly = true; kernel = null; };
+    hardware.opengl.package32 = pkgs.pkgsi686Linux.linuxPackages.ati_drivers_x11.override { libsOnly = true; kernel = null; };
 
     environment.systemPackages = [ ati_x11 ];
 
diff --git a/nixos/modules/hardware/video/nvidia.nix b/nixos/modules/hardware/video/nvidia.nix
index f8524ab99e8a..21e12395498c 100644
--- a/nixos/modules/hardware/video/nvidia.nix
+++ b/nixos/modules/hardware/video/nvidia.nix
@@ -1,6 +1,6 @@
 # This module provides the proprietary NVIDIA X11 / OpenGL drivers.
 
-{ stdenv, config, lib, pkgs, pkgs_i686, ... }:
+{ stdenv, config, lib, pkgs, ... }:
 
 with lib;
 
@@ -25,7 +25,7 @@ let
   nvidia_x11 = nvidiaForKernel config.boot.kernelPackages;
   nvidia_libs32 =
     if versionOlder nvidia_x11.version "391" then
-      ((nvidiaForKernel pkgs_i686.linuxPackages).override { libsOnly = true; kernel = null; }).out
+      ((nvidiaForKernel pkgs.pkgsi686Linux.linuxPackages).override { libsOnly = true; kernel = null; }).out
     else
       (nvidiaForKernel config.boot.kernelPackages).lib32;
 
diff --git a/nixos/modules/misc/nixpkgs.nix b/nixos/modules/misc/nixpkgs.nix
index 7f9833e184ab..1dfd2c3c6cf3 100644
--- a/nixos/modules/misc/nixpkgs.nix
+++ b/nixos/modules/misc/nixpkgs.nix
@@ -208,7 +208,6 @@ in
   config = {
     _module.args = {
       pkgs = cfg.pkgs;
-      pkgs_i686 = cfg.pkgs.pkgsi686Linux;
     };
   };
 }
diff --git a/nixos/modules/virtualisation/parallels-guest.nix b/nixos/modules/virtualisation/parallels-guest.nix
index 36ca7f356d44..4e0f2cae299e 100644
--- a/nixos/modules/virtualisation/parallels-guest.nix
+++ b/nixos/modules/virtualisation/parallels-guest.nix
@@ -1,4 +1,4 @@
-{ config, lib, pkgs, pkgs_i686, ... }:
+{ config, lib, pkgs, ... }:
 
 with lib;
 
@@ -64,7 +64,7 @@ in
     };
 
     hardware.opengl.package = prl-tools;
-    hardware.opengl.package32 = pkgs_i686.linuxPackages.prl-tools.override { libsOnly = true; kernel = null; };
+    hardware.opengl.package32 = pkgs.pkgsi686Linux.linuxPackages.prl-tools.override { libsOnly = true; kernel = null; };
 
     services.udev.packages = [ prl-tools ];
 

From 370ce8fcd39a3ed1002db0d7fb281576e39fc4ef Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Sat, 3 Nov 2018 00:58:58 -0500
Subject: [PATCH 0401/1129] stage.nix: throw error on incorrect pkgsi686Linux
 usage

pkgsi686Linux now throws an error with a message as opposed to the
previous assertion.
---
 pkgs/top-level/stage.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/top-level/stage.nix b/pkgs/top-level/stage.nix
index f838d707b0c0..4e6531286ee5 100644
--- a/pkgs/top-level/stage.nix
+++ b/pkgs/top-level/stage.nix
@@ -150,7 +150,7 @@ let
 
     # All packages built for i686 Linux.
     # Used by wine, firefox with debugging version of Flash, ...
-    pkgsi686Linux = assert stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isx86; nixpkgsFun {
+    pkgsi686Linux = if stdenv.hostPlatform.isLinux && stdenv.hostPlatform.isx86 then nixpkgsFun {
       inherit overlays config;
       ${if stdenv.hostPlatform == stdenv.buildPlatform
         then "localSystem" else "crossSystem"} = {
@@ -158,7 +158,7 @@ let
           cpu = lib.systems.parse.cpuTypes.i686;
         };
       };
-    };
+    } else throw "i686 Linux package set can only be used with the x86 family.";
 
     # Extend the package set with zero or more overlays. This preserves
     # preexisting overlays. Prefer to initialize with the right overlays

From c64624b8435af07d95effbb928d955963a5fa859 Mon Sep 17 00:00:00 2001
From: aszlig <aszlig@nix.build>
Date: Sat, 3 Nov 2018 04:50:26 +0100
Subject: [PATCH 0402/1129] autoPatchelfHook: Correctly detect PIE binaries

I originally thought it would just be enough to just check for an INTERP
section in isExecutable, however this would mean that we don't detect
statically linked ELF files, which would break our recent improvement to
gracefully handle those.

In theory, we are only interested in ELF files that have an INTERP
section, so checking for INTERP would be enough. Unfortunately the
isExecutable function is already used outside of autoPatchelfHook, so we
can't easily get rid of it now, so let's actually strive for more
correctness and make isExecutable actually match ELF files that are
executable.

So what we're doing instead now is to check whether either the ELF type
is EXEC *or* we have an INTERP section and if one of them is true we
should have an ELF executable, even if it's statically linked.

Along the way I also set LANG=C for the invocations of readelf, just to
be sure we don't get locale-dependent output.

Tested this with the following command (which contains almost[1] all the
packages using autoPatchelfHook), checking whether we run into any
library-related errors:

  nix-build -E 'with import ./. { config.allowUnfree = true; };
    runCommand "test-executables" {
      drvs = [
        anydesk cups-kyodialog3 elasticsearch franz gurobi
        masterpdfeditor oracle-instantclient powershell reaper
        sourcetrail teamviewer unixODBCDrivers.msodbcsql17 virtlyst
        vk-messenger wavebox zoom-us
      ];
    } ("for i in $drvs; do for b in $i/bin/*; do " +
       "[ -x \"$b\" ] && timeout 10 \"$b\" || :; done; done")
  '

Apart from testing against library-related errors I also compared the
resulting store paths against the ones prior to this commit. Only
anydesk and virtlyst had the same as they didn't have self-references,
everything else differed only because of self-references, except
elasticsearch, which had the following PIE binaries:

  * modules/x-pack/x-pack-ml/platform/linux-x86_64/bin/autoconfig
  * modules/x-pack/x-pack-ml/platform/linux-x86_64/bin/autodetect
  * modules/x-pack/x-pack-ml/platform/linux-x86_64/bin/categorize
  * modules/x-pack/x-pack-ml/platform/linux-x86_64/bin/controller
  * modules/x-pack/x-pack-ml/platform/linux-x86_64/bin/normalize

These binaries were now patched, which is what this commit is all about.

[1]: I didn't include the "maxx" package (MaXX Interactive Desktop)
     because the upstream URLs are no longer existing and I couldn't
     find them elsewhere on the web.

Signed-off-by: aszlig <aszlig@nix.build>
Fixes: https://github.com/NixOS/nixpkgs/issues/48330
Cc: @gnidorah (for MaXX Interactive Desktop)
---
 pkgs/build-support/setup-hooks/auto-patchelf.sh | 13 +++++++++++--
 1 file changed, 11 insertions(+), 2 deletions(-)

diff --git a/pkgs/build-support/setup-hooks/auto-patchelf.sh b/pkgs/build-support/setup-hooks/auto-patchelf.sh
index 7c165627f72e..d1ae317ff9a4 100644
--- a/pkgs/build-support/setup-hooks/auto-patchelf.sh
+++ b/pkgs/build-support/setup-hooks/auto-patchelf.sh
@@ -7,7 +7,16 @@ gatherLibraries() {
 addEnvHooks "$targetOffset" gatherLibraries
 
 isExecutable() {
-    readelf -h "$1" 2> /dev/null | grep -q '^ *Type: *EXEC\>'
+    # For dynamically linked ELF files it would be enough to check just for the
+    # INTERP section. However, we won't catch statically linked executables as
+    # they only have an ELF type of EXEC but no INTERP.
+    #
+    # So what we do here is just check whether *either* the ELF type is EXEC
+    # *or* there is an INTERP section. This also catches position-independent
+    # executables, as they typically have an INTERP section but their ELF type
+    # is DYN.
+    LANG=C readelf -h -l "$1" 2> /dev/null \
+        | grep -q '^ *Type: *EXEC\>\|^ *INTERP\>'
 }
 
 # We cache dependencies so that we don't need to search through all of them on
@@ -157,7 +166,7 @@ autoPatchelf() {
       isELF "$file" || continue
       if isExecutable "$file"; then
           # Skip if the executable is statically linked.
-          readelf -l "$file" | grep -q "^ *INTERP\\>" || continue
+          LANG=C readelf -l "$file" | grep -q "^ *INTERP\\>" || continue
       fi
       autoPatchelfFile "$file"
     done < <(find "$prefix" -type f -print0)

From fc96e53587aedcb58f74f20a17301fb19db5d040 Mon Sep 17 00:00:00 2001
From: gnidorah <gnidorah@users.noreply.github.com>
Date: Sat, 3 Nov 2018 10:43:39 +0300
Subject: [PATCH 0403/1129] maxx: fix urls

---
 pkgs/desktops/maxx/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/maxx/default.nix b/pkgs/desktops/maxx/default.nix
index 10fa745d9787..6f515068418e 100644
--- a/pkgs/desktops/maxx/default.nix
+++ b/pkgs/desktops/maxx/default.nix
@@ -18,11 +18,11 @@ in stdenv.mkDerivation {
 
   srcs = [
     (fetchurl {
-      url = "http://maxxinteractive.com/downloads/${version}/FEDORA/MaXX-${version}-NO-ARCH.tar.gz";
+      url = "http://maxxdesktop.arcadedaydream.com/Indy-Releases/Installers/MaXX-${version}-NO-ARCH.tar.gz";
       sha256 = "1d23j08wwrrn5cp7csv70pcz9jppcn0xb1894wkp0caaliy7g31y";
     })
     (fetchurl {
-      url = "http://maxxinteractive.com/downloads/${version}/FEDORA/MaXX-${version}-x86_64.tar.gz";
+      url = "http://maxxdesktop.arcadedaydream.com/Indy-Releases/Installers/MaXX-${version}-x86_64.tar.gz";
       sha256 = "156p2lra184wyvibrihisd7cr1ivqaygsf0zfm26a12gx23b7708";
     })
   ];

From 1f21fc5e47c2bf7d9cf09cc781c76381d017894c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Dani=C3=ABl=20de=20Kok?= <me@danieldk.eu>
Date: Sat, 3 Nov 2018 08:47:18 +0100
Subject: [PATCH 0404/1129] cargo-asm: fix build on macOS Mojave

Building cargo-asm on Mojave fails with

ld: framework not found Security

Add Security as a build input.
---
 pkgs/development/tools/rust/cargo-asm/default.nix | 4 +++-
 pkgs/top-level/all-packages.nix                   | 4 +++-
 2 files changed, 6 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/tools/rust/cargo-asm/default.nix b/pkgs/development/tools/rust/cargo-asm/default.nix
index ca793bf49080..246f5b18843c 100644
--- a/pkgs/development/tools/rust/cargo-asm/default.nix
+++ b/pkgs/development/tools/rust/cargo-asm/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, rustPlatform }:
+{ stdenv, fetchFromGitHub, rustPlatform, Security }:
 
 rustPlatform.buildRustPackage rec {
   name = "cargo-asm-${version}";
@@ -13,6 +13,8 @@ rustPlatform.buildRustPackage rec {
 
   cargoSha256 = "1m2j6i8hc8isdlj77gv9m6sk6q0x3bvzpva2k16g27i1ngy1989b";
 
+  buildInputs = stdenv.lib.optional stdenv.isDarwin Security;
+
   # Test checks against machine code output, which fails with some
   # LLVM/compiler versions.
   doCheck = false;
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 62cef2d50689..9917acbbf10e 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -7357,7 +7357,9 @@ with pkgs;
   cargo-tree = callPackage ../tools/package-management/cargo-tree { };
   cargo-update = callPackage ../tools/package-management/cargo-update { };
 
-  cargo-asm = callPackage ../development/tools/rust/cargo-asm { };
+  cargo-asm = callPackage ../development/tools/rust/cargo-asm {
+    inherit (darwin.apple_sdk.frameworks) Security;
+  };
   cargo-fuzz = callPackage ../development/tools/rust/cargo-fuzz { };
 
   pyo3-pack = callPackage ../development/tools/rust/pyo3-pack { };

From 09d49a1c5d708492dd22d671ea100dd44cba4b64 Mon Sep 17 00:00:00 2001
From: taku0 <mxxouy6x3m_github@tatapa.org>
Date: Thu, 1 Nov 2018 09:12:36 +0900
Subject: [PATCH 0405/1129] thunderbird: 60.2.1 -> 60.3.0

---
 .../networking/mailreaders/thunderbird/default.nix   | 12 ++----------
 1 file changed, 2 insertions(+), 10 deletions(-)

diff --git a/pkgs/applications/networking/mailreaders/thunderbird/default.nix b/pkgs/applications/networking/mailreaders/thunderbird/default.nix
index 419cc2fd2d84..69540d6092f8 100644
--- a/pkgs/applications/networking/mailreaders/thunderbird/default.nix
+++ b/pkgs/applications/networking/mailreaders/thunderbird/default.nix
@@ -24,11 +24,11 @@ let
   gcc = if stdenv.cc.isGNU then stdenv.cc.cc else stdenv.cc.cc.gcc;
 in stdenv.mkDerivation rec {
   name = "thunderbird-${version}";
-  version = "60.2.1";
+  version = "60.3.0";
 
   src = fetchurl {
     url = "mirror://mozilla/thunderbird/releases/${version}/source/thunderbird-${version}.source.tar.xz";
-    sha512 = "018l9pq03nzlirpaf285qpwvb8s4msam8n91d15lzc1bc1caq9zcy2dnrnvn5av3jlapm9ckz028iar66nhqxi2kkqbmiaq0v4s6kfp";
+    sha512 = "39sicxgfzfx4dm50nn2l8mimyjpvfigdpmkbxk6lvvbi8xxl527631xxq0gh1di6iyp590vpwk16z7hvdfbqj2pd3231knjkl991hvc";
   };
 
   # from firefox, but without sound libraries
@@ -48,14 +48,6 @@ in stdenv.mkDerivation rec {
   nativeBuildInputs = [ m4 autoconf213 which gnused pkgconfig perl python wrapperTool cargo rustc ];
 
   patches = [
-    # https://bugzilla.mozilla.org/show_bug.cgi?format=default&id=1479540
-    # https://hg.mozilla.org/releases/mozilla-release/rev/bc651d3d910c
-    (fetchpatch {
-      name = "bc651d3d910c.patch";
-      url = "https://hg.mozilla.org/releases/mozilla-release/raw-rev/bc651d3d910c";
-      sha256 = "0iybkadsgsf6a3pq3jh8z1p110vmpkih8i35jfj8micdkhxzi89g";
-    })
-
     # Remove buildconfig.html to prevent a dependency on clang etc.
     ../../browsers/firefox/no-buildconfig.patch
   ];

From 8a8a2f61a9eebec4e330c59a6de643983dd2162e Mon Sep 17 00:00:00 2001
From: Symphorien Gibol <symphorien+git@xlumurb.eu>
Date: Sat, 3 Nov 2018 11:08:23 +0100
Subject: [PATCH 0406/1129] nix-du: 0.2.0 -> 0.3.0

---
 pkgs/tools/package-management/nix-du/default.nix | 14 ++++++--------
 1 file changed, 6 insertions(+), 8 deletions(-)

diff --git a/pkgs/tools/package-management/nix-du/default.nix b/pkgs/tools/package-management/nix-du/default.nix
index 24672296506d..59ec714261b1 100644
--- a/pkgs/tools/package-management/nix-du/default.nix
+++ b/pkgs/tools/package-management/nix-du/default.nix
@@ -1,25 +1,23 @@
-{ stdenv, fetchFromGitHub, rustPlatform, nix, boost, graphviz }:
+{ stdenv, fetchFromGitHub, rustPlatform, nix, boost, graphviz, darwin }:
 rustPlatform.buildRustPackage rec {
   name = "nix-du-${version}";
-  version = "0.2.0";
+  version = "0.3.0";
 
   src = fetchFromGitHub {
     owner = "symphorien";
     repo = "nix-du";
     rev = "v${version}";
-    sha256 = "1n1qgqjbwbb59xnzgz0dn8h8pckh6yq3crh0w6x2sngijwh678x8";
+    sha256 = "1x6qpivxbn94034jfdxb97xi97fhcdv2z7llq2ccfc80mgd0gz8l";
   };
-  cargoSha256 = "1qidbrkdpf4kliyvy2040qi3a67s8mr2r46rjcblr1v2gar0xgs0";
+  cargoSha256 = "0sva4lnhccm6ly7pa6m99s3fqkmh1dzv7r2727nsg2f55prd4kxc";
 
-  # switch to true when nix includes https://github.com/NixOS/nix/pull/2223 and 
-  # https://github.com/NixOS/nix/pull/2234
-  doCheck = false;
+  doCheck = true;
   checkInputs = [ graphviz ];
 
   buildInputs = [
     boost
     nix
-  ];
+  ] ++ stdenv.lib.optional stdenv.isDarwin darwin.apple_sdk.frameworks.Security;
 
   meta = with stdenv.lib; {
     description = "A tool to determine which gc-roots take space in your nix store";

From ffd083ec44661a263ef5c10760a47a8f92da1991 Mon Sep 17 00:00:00 2001
From: Will Dietz <github@wdtz.org>
Date: Sat, 3 Nov 2018 05:47:35 -0500
Subject: [PATCH 0407/1129] jq: 1.5 -> 1.6

* jq: 1.5 -> 1.6 (!!)

(last release was in 2015! :))

* jq: drop darwin patch, appears resolved by upgrade

commit history isn't that long, and has a few addressing
behavior on osx re:strptime-- and since this patch
doesn't apply it seems likely it's been resolved
but probably can be checked by any interested folks w/darwin.
---
 .../tools/jq/darwin-strptime-test.patch       | 16 ---------------
 pkgs/development/tools/jq/default.nix         | 20 ++-----------------
 2 files changed, 2 insertions(+), 34 deletions(-)
 delete mode 100644 pkgs/development/tools/jq/darwin-strptime-test.patch

diff --git a/pkgs/development/tools/jq/darwin-strptime-test.patch b/pkgs/development/tools/jq/darwin-strptime-test.patch
deleted file mode 100644
index 4ea83fc164a3..000000000000
--- a/pkgs/development/tools/jq/darwin-strptime-test.patch
+++ /dev/null
@@ -1,16 +0,0 @@
-diff --git a/tests/jq.test b/tests/jq.test
-index 4a4018b..f5aa7d5 100644
---- a/src/tests/jq.test
-+++ b/src/tests/jq.test
-@@ -1144,9 +1144,9 @@ bsearch(4)
- [1,2,3]
- -4
- 
--[strptime("%Y-%m-%dT%H:%M:%SZ")|(.,mktime)]
-+[strptime("%Y-%m-%dT%H:%M:%SZ")|mktime]
- "2015-03-05T23:51:47Z"
--[[2015,2,5,23,51,47,4,63],1425599507]
-+[1425599507]
- 
- strftime("%Y-%m-%dT%H:%M:%SZ")
- [2015,2,5,23,51,47,4,63]
diff --git a/pkgs/development/tools/jq/default.nix b/pkgs/development/tools/jq/default.nix
index 712ec64bd416..b7b2b5066b9f 100644
--- a/pkgs/development/tools/jq/default.nix
+++ b/pkgs/development/tools/jq/default.nix
@@ -2,33 +2,17 @@
 
 stdenv.mkDerivation rec {
   name = "jq-${version}";
-  version="1.5";
+  version="1.6";
 
   src = fetchurl {
     url="https://github.com/stedolan/jq/releases/download/jq-${version}/jq-${version}.tar.gz";
-    sha256="0g29kyz4ykasdcrb0zmbrp2jqs9kv1wz9swx849i2d1ncknbzln4";
+    sha256="1a76f46a652i2g333kfvrl6mp2w7whf6h1yly519izg4y967h9cn";
   };
 
   outputs = [ "bin" "doc" "man" "dev" "lib" "out" ];
 
   buildInputs = [ oniguruma ];
 
-  patches = [
-    (fetchpatch {
-      name = "CVE-2015-8863.patch";
-      url = https://github.com/stedolan/jq/commit/8eb1367ca44e772963e704a700ef72ae2e12babd.diff;
-      sha256 = "18bjanzvklfzlzzd690y88725l7iwl4f6wnr429na5pfmircbpvh";
-    })
-    (fetchpatch {
-      name = "CVE-2016-4074.patch";
-      url = https://patch-diff.githubusercontent.com/raw/stedolan/jq/pull/1214.diff;
-      sha256 = "1w8bapnyp56di6p9casbfczfn8258rw0z16grydavdjddfm280l9";
-    })
-  ]
-    ++ stdenv.lib.optional stdenv.isDarwin ./darwin-strptime-test.patch;
-
-  patchFlags = [ "-p2" ]; # `src` subdir was introduced after v1.5 was released
-
   configureFlags =
     [
     "--bindir=\${bin}/bin"

From ca7fa914c3bd96521af466d1ed48cc0ac9657cb4 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sat, 3 Nov 2018 12:40:03 +0100
Subject: [PATCH 0408/1129] python.pkgs.bsddb3: enable python3 and tests

---
 pkgs/development/python-modules/bsddb3/default.nix | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/python-modules/bsddb3/default.nix b/pkgs/development/python-modules/bsddb3/default.nix
index 971aac70ad8e..700f5b3d0c52 100644
--- a/pkgs/development/python-modules/bsddb3/default.nix
+++ b/pkgs/development/python-modules/bsddb3/default.nix
@@ -3,12 +3,12 @@
 , fetchPypi
 , pkgs
 , isPy3k
+, python
 }:
 
 buildPythonPackage rec {
   pname = "bsddb3";
   version = "6.2.6";
-  disabled = isPy3k;
 
   src = fetchPypi {
     inherit pname version;
@@ -17,8 +17,9 @@ buildPythonPackage rec {
 
   buildInputs = [ pkgs.db ];
 
-  # Judging from SyntaxError in test
-  doCheck = false; # test suite breaks python3 compatibility
+  checkPhase = ''
+    ${python.interpreter} test.py
+  '';
 
   # Path to database need to be set.
   # Somehow the setup.py flag is not propagated.

From 9973a266abf266c40f7f1082a917904ece459d53 Mon Sep 17 00:00:00 2001
From: Matthew Harm Bekkema <mbekkema97@gmail.com>
Date: Sat, 3 Nov 2018 22:51:36 +1100
Subject: [PATCH 0409/1129] firefox-esr-60: 60.2.2 -> 60.3.0 [critical security
 fixes]

This update bumps the package to the latest stable version containing a
few security fixes:

- CVE-2018-12392: Crash with nested event loops
  When manipulating user events in nested loops while opening a document
  through script, it is possible to trigger a potentially exploitable
  crash due to poor event handling.

- CVE-2018-12393: Integer overflow during Unicode conversion while loading JavaScript
  A potential vulnerability was found in 32-bit builds where an integer
  overflow during the conversion of scripts to an internal UTF-16
  representation could result in allocating a buffer too small for the
  conversion. This leads to a possible out-of-bounds write.
  Note: 64-bit builds are not vulnerable to this issue.

- CVE-2018-12395: WebExtension bypass of domain restrictions through header rewriting
  By rewriting the Host request headers using the webRequest API, a
  WebExtension can bypass domain restrictions through domain fronting.
  This would allow access to domains that share a host that are
  otherwise restricted.

- CVE-2018-12396: WebExtension content scripts can execute in disallowed contexts
  A vulnerability where a WebExtension can run content scripts in
  disallowed contexts following navigation or other events. This allows
  for potential privilege escalation by the WebExtension on sites where
  content scripts should not be run.

- CVE-2018-12397: Missing warning prompt when WebExtension requests local file access
  A WebExtension can request access to local files without the warning
  prompt stating that the extension will "Access your data for all
  websites" being displayed to the user. This allows extensions to run
  content scripts in local pages without permission warnings when a
  local file is opened.

- CVE-2018-12389: Memory safety bugs fixed in Firefox ESR 60.3
  Mozilla developers and community members Daniel Veditz and Philipp
  reported memory safety bugs present in Firefox ESR 60.2. Some of these
  bugs showed evidence of memory corruption and we presume that with
  enough effort that some of these could be exploited to run arbitrary
  code.

- CVE-2018-12390: Memory safety bugs fixed in Firefox 63 and Firefox ESR 60.3
  Mozilla developers and community members Christian Holler, Bob Owen,
  Boris Zbarsky, Calixte Denizet, Jason Kratzer, Jed Davis, Taegeon Lee,
  Philipp, Ronald Crane, Raul Gurzau, Gary Kwong, Tyson Smith, Raymond
  Forbes, and Bogdan Tara reported memory safety bugs present in Firefox
  62 and Firefox ESR 60.2. Some of these bugs showed evidence of memory
  corruption and we presume that with enough effort that some of these
  could be exploited to run arbitrary code.

Source: https://www.mozilla.org/en-US/security/advisories/mfsa2018-27/
---
 pkgs/applications/networking/browsers/firefox/packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/browsers/firefox/packages.nix b/pkgs/applications/networking/browsers/firefox/packages.nix
index 102b0de3fcc1..c338f9981ef3 100644
--- a/pkgs/applications/networking/browsers/firefox/packages.nix
+++ b/pkgs/applications/networking/browsers/firefox/packages.nix
@@ -70,10 +70,10 @@ rec {
 
   firefox-esr-60 = common rec {
     pname = "firefox-esr";
-    ffversion = "60.2.2esr";
+    ffversion = "60.3.0esr";
     src = fetchurl {
       url = "mirror://mozilla/firefox/releases/${ffversion}/source/firefox-${ffversion}.source.tar.xz";
-      sha512 = "2h2naaxx4lv90bjpcrsma4sdhl4mvsisx3zi09vakjwv2lad91gy41cmcpqprpcbsmlvpqf8yiv52ah4d02a8d9335xhw2ajw6asjc1";
+      sha512 = "36ipksq4408mfkyzna7kkjyg70nqx0hzg8zp34kmsynl42whvsqhsfl198c34shsx9zhfsag3hzx2ihhfnj8ph8b0xdgyrmi2ijbvbx";
     };
 
     patches = nixpkgsPatches ++ [

From f5af5b19f4f151d6e633b8d38234bbde5b7f335a Mon Sep 17 00:00:00 2001
From: Ikarulus <github.ikarulus@zer.one>
Date: Wed, 31 Oct 2018 23:31:24 +0100
Subject: [PATCH 0410/1129] librepcb-unstable: 2018-06-28 -> 2018-10-31

---
 pkgs/applications/science/electronics/librepcb/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/science/electronics/librepcb/default.nix b/pkgs/applications/science/electronics/librepcb/default.nix
index 33eb52c18ee7..c0831847b720 100644
--- a/pkgs/applications/science/electronics/librepcb/default.nix
+++ b/pkgs/applications/science/electronics/librepcb/default.nix
@@ -2,14 +2,14 @@
 
 stdenv.mkDerivation rec {
   name = "librepcb-${version}";
-  version = "20180628";
+  version = "20181031";
 
   src = fetchFromGitHub {
     owner = "LibrePCB";
     repo = "LibrePCB";
     fetchSubmodules = true;
-    rev = "68577ecf8f39299ef4d81ff964b01c3908d1f10b";
-    sha256 = "1ca4q8b8fhp19vq5yi55sq6xlsz14ihw3i0h7rq5fw0kigpjldmz";
+    rev = "3cf8dba9fa88e5b392d639c9fdbcf3a44664170a";
+    sha256 = "0kr4mii5w3kj3kqvhgq7zjxjrq44scx8ky0x77gyqmwvwfwk7nmx";
   };
 
   enableParallelBuilding = true;

From 3cfa035a9957cc0d4169ced909841d7ac3383613 Mon Sep 17 00:00:00 2001
From: taku0 <mxxouy6x3m_github@tatapa.org>
Date: Sat, 3 Nov 2018 21:34:33 +0900
Subject: [PATCH 0411/1129] adoptopenjdk-openj9-bin: 11 -> 11.0.1

---
 .../adoptopenjdk-bin/jdk11-darwin.nix         | 27 +++++++++++++++----
 .../adoptopenjdk-bin/jdk11-linux.nix          | 21 ++++++++++-----
 pkgs/top-level/all-packages.nix               |  9 ++++---
 3 files changed, 42 insertions(+), 15 deletions(-)

diff --git a/pkgs/development/compilers/adoptopenjdk-bin/jdk11-darwin.nix b/pkgs/development/compilers/adoptopenjdk-bin/jdk11-darwin.nix
index 77d9d85aaa93..573f5e175ec6 100644
--- a/pkgs/development/compilers/adoptopenjdk-bin/jdk11-darwin.nix
+++ b/pkgs/development/compilers/adoptopenjdk-bin/jdk11-darwin.nix
@@ -1,26 +1,43 @@
 let
-  version = "11";
-  buildNumber = "28";
-  baseUrl = "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-${version}%2B${buildNumber}";
-  makePackage = { packageType, vmType, sha256 }: import ./jdk-darwin-base.nix {
+  makePackage = { version, buildNumber, packageType, vmType, sha256 }: import ./jdk-darwin-base.nix {
     name = if packageType == "jdk"
       then
         "adoptopenjdk-${vmType}-bin-${version}"
       else
         "adoptopenjdk-${packageType}-${vmType}-bin-${version}";
-    url = "${baseUrl}/OpenJDK${version}-${packageType}_x64_mac_${vmType}_${version}_${buildNumber}.tar.gz";
+
+    url = "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-${version}%2B${buildNumber}/OpenJDK11-${packageType}_x64_mac_${vmType}_${version}_${buildNumber}.tar.gz";
+
     inherit sha256;
   };
 in
 {
   jdk-hotspot = makePackage {
+    version = "11";
+    buildNumber = "28";
     packageType = "jdk";
     vmType = "hotspot";
     sha256 = "ca0ec49548c626904061b491cae0a29b9b4b00fb34d8973dc217e10ab21fb0f3";
   };
   jre-hotspot = makePackage {
+    version = "11";
+    buildNumber = "28";
     packageType = "jre";
     vmType = "hotspot";
     sha256 = "ef4dbfe5aed6ab2278fcc14db6cc73abbaab56e95f6ebb023790a7ebc6d7f30c";
   };
+  jdk-openj9 = makePackage {
+    version = "11.0.1";
+    buildNumber = "13";
+    packageType = "jdk";
+    vmType = "openj9";
+    sha256 = "c5e9b588b4ac5b0bd5b4edd69d59265d1199bb98af7ca3270e119b264ffb6e3f";
+  };
+  jre-openj9 = makePackage {
+    version = "11.0.1";
+    buildNumber = "13";
+    packageType = "jre";
+    vmType = "openj9";
+    sha256 = "0901dc5946fdf967f92f7b719ddfffdcdde5bd3fef86a83d7a3f2f39ddbef1f8";
+  };
 }
diff --git a/pkgs/development/compilers/adoptopenjdk-bin/jdk11-linux.nix b/pkgs/development/compilers/adoptopenjdk-bin/jdk11-linux.nix
index 6e00782c3918..f4990b6effc5 100644
--- a/pkgs/development/compilers/adoptopenjdk-bin/jdk11-linux.nix
+++ b/pkgs/development/compilers/adoptopenjdk-bin/jdk11-linux.nix
@@ -1,36 +1,43 @@
 let
-  version = "11";
-  buildNumber = "28";
-  baseUrl = "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-${version}%2B${buildNumber}";
-  makePackage = { packageType, vmType, sha256 }: import ./jdk-linux-base.nix {
+  makePackage = { version, buildNumber, packageType, vmType, sha256 }: import ./jdk-linux-base.nix {
     name = if packageType == "jdk"
       then
         "adoptopenjdk-${vmType}-bin-${version}"
       else
         "adoptopenjdk-${packageType}-${vmType}-bin-${version}";
-    url = "${baseUrl}/OpenJDK${version}-${packageType}_x64_linux_${vmType}_${version}_${buildNumber}.tar.gz";
+
+    url = "https://github.com/AdoptOpenJDK/openjdk11-binaries/releases/download/jdk-${version}%2B${buildNumber}/OpenJDK11-${packageType}_x64_linux_${vmType}_${version}_${buildNumber}.tar.gz";
+
     inherit sha256;
   };
 in
 {
   jdk-hotspot = makePackage {
+    version = "11";
+    buildNumber = "28";
     packageType = "jdk";
     vmType = "hotspot";
     sha256 = "e1e18fc9ce2917473da3e0acb5a771bc651f600c0195a3cb40ef6f22f21660af";
   };
   jre-hotspot = makePackage {
+    version = "11";
+    buildNumber = "28";
     packageType = "jre";
     vmType = "hotspot";
     sha256 = "346448142d46c6e51d0fadcaadbcde31251d7678922ec3eb010fcb1b6e17804c";
   };
   jdk-openj9 = makePackage {
+    version = "11.0.1";
+    buildNumber = "13";
     packageType = "jdk";
     vmType = "openj9";
-    sha256 = "fd77f22eb74078bcf974415abd888296284d2ceb81dbaca6ff32f59416ebc57f";
+    sha256 = "765947ab9457a29d2aa9d11460a4849611343c1e0ea3b33b9c08409cd4672251";
   };
   jre-openj9 = makePackage {
+    version = "11.0.1";
+    buildNumber = "13";
     packageType = "jre";
     vmType = "openj9";
-    sha256 = "83a7c95e6b2150a739bdd5e8a6fe0315904fd13d8867c95db67c0318304a2c42";
+    sha256 = "a016413fd8415429b42e543fed7a1bee5010b1dbaf71d29a26e1c699f334c6ff";
   };
 }
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index f214f7043b89..973e46071ccd 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -6458,9 +6458,12 @@ with pkgs;
     then callPackage adoptopenjdk-bin-11-packages-linux.jre-hotspot {}
     else callPackage adoptopenjdk-bin-11-packages-darwin.jre-hotspot {};
 
-  # no OpenJ9 for Darwin
-  adoptopenjdk-openj9-bin-11 = callPackage adoptopenjdk-bin-11-packages-linux.jdk-openj9 {};
-  adoptopenjdk-jre-openj9-bin-11 = callPackage adoptopenjdk-bin-11-packages-linux.jre-openj9 {};
+  adoptopenjdk-openj9-bin-11 = if stdenv.isLinux
+    then callPackage adoptopenjdk-bin-11-packages-linux.jdk-openj9 {}
+    else callPackage adoptopenjdk-bin-11-packages-darwin.jdk-openj9 {};
+  adoptopenjdk-jre-openj9-bin-11 = if stdenv.isLinux
+    then callPackage adoptopenjdk-bin-11-packages-linux.jre-openj9 {}
+    else callPackage adoptopenjdk-bin-11-packages-darwin.jre-openj9 {};
 
   adoptopenjdk-bin = adoptopenjdk-hotspot-bin-11;
   adoptopenjdk-jre-bin = adoptopenjdk-jre-hotspot-bin-11;

From c1324d571d7c9ce276d29cd789fc6bba95980acd Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Sat, 3 Nov 2018 15:25:56 +0100
Subject: [PATCH 0412/1129] home-assistant: 0.81.2 -> 0.81.5

---
 pkgs/servers/home-assistant/component-packages.nix | 2 +-
 pkgs/servers/home-assistant/default.nix            | 4 ++--
 pkgs/servers/home-assistant/frontend.nix           | 4 ++--
 3 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/pkgs/servers/home-assistant/component-packages.nix b/pkgs/servers/home-assistant/component-packages.nix
index 73cc01281493..54419022970d 100644
--- a/pkgs/servers/home-assistant/component-packages.nix
+++ b/pkgs/servers/home-assistant/component-packages.nix
@@ -2,7 +2,7 @@
 # Do not edit!
 
 {
-  version = "0.81.2";
+  version = "0.81.5";
   components = {
     "abode" = ps: with ps; [  ];
     "ads" = ps: with ps; [  ];
diff --git a/pkgs/servers/home-assistant/default.nix b/pkgs/servers/home-assistant/default.nix
index 932995513af6..427f35e2fbcd 100644
--- a/pkgs/servers/home-assistant/default.nix
+++ b/pkgs/servers/home-assistant/default.nix
@@ -79,7 +79,7 @@ let
   extraBuildInputs = extraPackages py.pkgs;
 
   # Don't forget to run parse-requirements.py after updating
-  hassVersion = "0.81.2";
+  hassVersion = "0.81.5";
 
 in with py.pkgs; buildPythonApplication rec {
   pname = "homeassistant";
@@ -94,7 +94,7 @@ in with py.pkgs; buildPythonApplication rec {
     owner = "home-assistant";
     repo = "home-assistant";
     rev = version;
-    sha256 = "0qg3kh99bqhsraa8jpqqrvaxz9l1gsbh3aazg3v0d6q6ng42y2bq";
+    sha256 = "1fgf9hrv7q7g8s561sir951vd27a459mh3k685xzfnhkh4si47g4";
   };
 
   propagatedBuildInputs = [
diff --git a/pkgs/servers/home-assistant/frontend.nix b/pkgs/servers/home-assistant/frontend.nix
index 4af2a4ec9220..89d77649d971 100644
--- a/pkgs/servers/home-assistant/frontend.nix
+++ b/pkgs/servers/home-assistant/frontend.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "home-assistant-frontend";
-  version = "20181026.1";
+  version = "20181026.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ea5e7fb769df2f096e2993c23d1aa3dc8652e0f0aa09a89863af22e095b80aa8";
+    sha256 = "b0610206eee06042847d89a581ecfcd71255b0e1ecff77e302237e8aa175b00d";
   };
 
   propagatedBuildInputs = [ user-agents ];

From 4b095c6c05e031ef57808be954244b991cff83d6 Mon Sep 17 00:00:00 2001
From: Jonathan Queiroz <github@johnjq.com>
Date: Sat, 3 Nov 2018 11:41:16 -0300
Subject: [PATCH 0413/1129] pythonPackages.fastpbkdf2: init at 0.2 (#47988)

---
 .../python-modules/fastpbkdf2/default.nix     | 26 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 28 insertions(+)
 create mode 100644 pkgs/development/python-modules/fastpbkdf2/default.nix

diff --git a/pkgs/development/python-modules/fastpbkdf2/default.nix b/pkgs/development/python-modules/fastpbkdf2/default.nix
new file mode 100644
index 000000000000..63a7565cf55a
--- /dev/null
+++ b/pkgs/development/python-modules/fastpbkdf2/default.nix
@@ -0,0 +1,26 @@
+{ stdenv, fetchFromGitHub, buildPythonPackage
+, openssl, pytest, cffi, six }:
+
+buildPythonPackage rec {
+  pname = "fastpbkdf2";
+  version = "0.2";
+
+  # Fetching from GitHub as tests are missing in PyPI
+  src = fetchFromGitHub {
+    owner  = "Ayrx";
+    repo   = "python-fastpbkdf2";
+    rev    = "v${version}";
+    sha256 = "1hvvlk3j28i6nswb6gy3mq7278nq0mgfnpxh1rv6jvi7xhd7qmlc";
+  };
+
+  buildInputs = [ openssl ];
+  checkInputs = [ pytest ];
+  propagatedBuildInputs = [ cffi six ];
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/Ayrx/python-fastpbkdf2;
+    description = "Python bindings for fastpbkdf2";
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ jqueiroz ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index efbb0a3acbbc..cc608eacb1a2 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -340,6 +340,8 @@ in {
 
   eradicate = callPackage ../development/python-modules/eradicate {  };
 
+  fastpbkdf2 = callPackage ../development/python-modules/fastpbkdf2 {  };
+
   fido2 = callPackage ../development/python-modules/fido2 {  };
 
   filterpy = callPackage ../development/python-modules/filterpy { };

From e9d31c85a45c62c8685d30494d10e832031ecd8f Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Fri, 2 Nov 2018 21:00:40 -0500
Subject: [PATCH 0414/1129] tootle: 0.1.5 -> 0.2.0

https://github.com/bleakgrey/tootle/releases/tag/0.2.0
---
 pkgs/applications/misc/tootle/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/tootle/default.nix b/pkgs/applications/misc/tootle/default.nix
index d15b8111fb0b..d7a7de368776 100644
--- a/pkgs/applications/misc/tootle/default.nix
+++ b/pkgs/applications/misc/tootle/default.nix
@@ -7,7 +7,7 @@
 
 let
   pname = "tootle";
-  version = "0.1.5";
+  version = "0.2.0";
 in stdenv.mkDerivation rec {
   name = "${pname}-${version}";
 
@@ -15,7 +15,7 @@ in stdenv.mkDerivation rec {
     owner = "bleakgrey";
     repo = pname;
     rev = version;
-    sha256 = "022h1rh1jk3m1f9al0s1rylmnqnkydyc81idfc8jf1g0frnvn5i6";
+    sha256 = "1z3wyx316nns6gi7vlvcfmalhvxncmvcmmlgclbv6b6hwl5x2ysi";
   };
 
   nativeBuildInputs = [ meson ninja pkgconfig python3 vala gobjectIntrospection wrapGAppsHook ];

From 99c052bac4e5d2c9f0d8d37d18fc414566f6b205 Mon Sep 17 00:00:00 2001
From: Sarah Brofeldt <sbrofeldt@gmail.com>
Date: Sat, 3 Nov 2018 16:16:17 +0100
Subject: [PATCH 0415/1129] nixos/google-network-daemon: systemd job type
 simple instead of oneshot (#49692)

---
 nixos/modules/virtualisation/google-compute-image.nix | 1 -
 1 file changed, 1 deletion(-)

diff --git a/nixos/modules/virtualisation/google-compute-image.nix b/nixos/modules/virtualisation/google-compute-image.nix
index caaf6c0aa59d..795858e5eae2 100644
--- a/nixos/modules/virtualisation/google-compute-image.nix
+++ b/nixos/modules/virtualisation/google-compute-image.nix
@@ -144,7 +144,6 @@ in
     path = with pkgs; [ iproute ];
     serviceConfig = {
       ExecStart = "${gce}/bin/google_network_daemon --debug";
-      Type = "oneshot";
     };
   };
 

From dff14ecfbf7246204f80d5d921ab44562ff9f329 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edward=20Tj=C3=B6rnhammar?= <ed@cflags.cc>
Date: Sat, 3 Nov 2018 16:22:53 +0100
Subject: [PATCH 0416/1129] i2pd: 2.21.0 -> 2.21.1

---
 pkgs/tools/networking/i2pd/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/networking/i2pd/default.nix b/pkgs/tools/networking/i2pd/default.nix
index 9ecf69637872..7ab77b2d2ee7 100644
--- a/pkgs/tools/networking/i2pd/default.nix
+++ b/pkgs/tools/networking/i2pd/default.nix
@@ -11,13 +11,13 @@ stdenv.mkDerivation rec {
 
   name = pname + "-" + version;
   pname = "i2pd";
-  version = "2.21.0";
+  version = "2.21.1";
 
   src = fetchFromGitHub {
     owner = "PurpleI2P";
     repo = pname;
     rev = version;
-    sha256 = "02zsig63cambwm479ckw4kl1dk00g1q2sbzsvn9vy1xpjy928n7v";
+    sha256 = "0j892s9ga9fjc2q1rw3hp5il4mw1jc0aiw60y1rfaiflyv0wd696";
   };
 
   buildInputs = with stdenv.lib; [ boost zlib openssl ]

From 74ef8234224ffed0624b42dc38cc7c47942ff1ab Mon Sep 17 00:00:00 2001
From: Periklis Tsirakidis <periklis.tsirakidis@holidaycheck.com>
Date: Sat, 3 Nov 2018 16:39:14 +0100
Subject: [PATCH 0417/1129] alacritty: fix build on darwin

---
 pkgs/applications/misc/alacritty/default.nix | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/pkgs/applications/misc/alacritty/default.nix b/pkgs/applications/misc/alacritty/default.nix
index e4dffa98f39a..594173f11c62 100644
--- a/pkgs/applications/misc/alacritty/default.nix
+++ b/pkgs/applications/misc/alacritty/default.nix
@@ -73,7 +73,10 @@ in buildRustPackage rec {
   buildInputs = rpathLibs
              ++ lib.optionals stdenv.isDarwin darwinFrameworks;
 
- outputs = [ "out" "terminfo" ];
+  outputs = [ "out" "terminfo" ];
+
+  # https://github.com/NixOS/nixpkgs/issues/49693
+  doCheck = !stdenv.isDarwin;
 
   postPatch = ''
     substituteInPlace copypasta/src/x11.rs \

From 5a1708b1abd7ac6024bb80782d6196afe2fe2e97 Mon Sep 17 00:00:00 2001
From: Tristan Helmich <fadenb@users.noreply.github.com>
Date: Sat, 3 Nov 2018 17:00:30 +0100
Subject: [PATCH 0418/1129] shutter: 0.94 -> 0.94.2 (#49546)

* shutter: 0.94 -> 0.94.2

* shutter: dependencies refresh

procps and perlPackages.FileBaseDir were missing
Perl package JSONMaybeXS replaces JSONXS
Moved makeWrapper to nativeBuildInputs
---
 pkgs/applications/graphics/shutter/default.nix | 15 ++++++++-------
 1 file changed, 8 insertions(+), 7 deletions(-)

diff --git a/pkgs/applications/graphics/shutter/default.nix b/pkgs/applications/graphics/shutter/default.nix
index a409060afdc6..7e7bf644ce79 100644
--- a/pkgs/applications/graphics/shutter/default.nix
+++ b/pkgs/applications/graphics/shutter/default.nix
@@ -1,27 +1,28 @@
 { stdenv, fetchurl, perl, perlPackages, makeWrapper, imagemagick, gdk_pixbuf, librsvg
-, hicolor-icon-theme
+, hicolor-icon-theme, procps
 }:
 
 let
   perlModules = with perlPackages;
     [ Gnome2 Gnome2Canvas Gtk2 Glib Pango Gnome2VFS Gnome2Wnck Gtk2ImageView
-      Gtk2Unique FileWhich FileCopyRecursive XMLSimple NetDBus XMLTwig
+      Gtk2Unique FileBaseDir FileWhich FileCopyRecursive XMLSimple NetDBus XMLTwig
       XMLParser HTTPMessage ProcSimple SortNaturally LocaleGettext
       ProcProcessTable URI ImageExifTool Gtk2AppIndicator LWP JSON
-      PerlMagick WWWMechanize HTTPDate HTMLForm HTMLParser HTMLTagset JSONXS
+      PerlMagick WWWMechanize HTTPDate HTMLForm HTMLParser HTMLTagset JSONMaybeXS
       commonsense HTTPCookies NetOAuth PathClass GooCanvas X11Protocol Cairo
       EncodeLocale TryTiny TypesSerialiser LWPMediaTypes
     ];
 in
 stdenv.mkDerivation rec {
-  name = "shutter-0.94";
+  name = "shutter-0.94.2";
 
   src = fetchurl {
-    url = "https://launchpad.net/shutter/0.9x/0.94/+download/shutter-0.94.tar.gz";
-    sha256 = "943152cdf9e1b2096d38e3da9622d8bf97956a08eda747c3e7fcc564a3f0f40d";
+    url = "https://launchpad.net/shutter/0.9x/0.94.2/+download/shutter-0.94.2.tar.gz";
+    sha256 = "0mas7npm935j4rhqqjn226822s9sa4bsxrkp0b5fjj3z096k6vw0";
   };
 
-  buildInputs = [ perl makeWrapper gdk_pixbuf librsvg ] ++ perlModules;
+  nativeBuildInputs = [ makeWrapper ];
+  buildInputs = [ perl procps gdk_pixbuf librsvg ] ++ perlModules;
 
   installPhase = ''
     mkdir -p "$out"

From b0068a2abe734b2f5cbad8a4cbff29ffa1177cf4 Mon Sep 17 00:00:00 2001
From: Lysergia <prikhi@users.noreply.github.com>
Date: Sat, 3 Nov 2018 12:24:00 -0400
Subject: [PATCH 0419/1129] lightdm-mini-greeter: 0.3.3 -> 0.3.4 (#49655)

New upstream release.
---
 .../display-managers/lightdm-mini-greeter/default.nix         | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/display-managers/lightdm-mini-greeter/default.nix b/pkgs/applications/display-managers/lightdm-mini-greeter/default.nix
index cf5c30a1ead7..91446f73507e 100644
--- a/pkgs/applications/display-managers/lightdm-mini-greeter/default.nix
+++ b/pkgs/applications/display-managers/lightdm-mini-greeter/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "lightdm-mini-greeter-${version}";
-  version = "0.3.3";
+  version = "0.3.4";
 
   src = fetchFromGitHub {
     owner = "prikhi";
     repo = "lightdm-mini-greeter";
     rev = version;
-    sha256 = "1xlj5wqagp765rqw40ci4wir21qwyszasynk82x8308k5d3asvwb";
+    sha256 = "1qi0bsqi8z2zv3303ww0kd7bciz6qx8na5bkvgrqlwyvq31czai5";
   };
 
   nativeBuildInputs = [ autoreconfHook pkgconfig ];

From f6aac1cc66c5aa516803fe06e8764a0130ab5ad4 Mon Sep 17 00:00:00 2001
From: Dmitry Kalinkin <dmitry.kalinkin@gmail.com>
Date: Sat, 3 Nov 2018 12:27:19 -0400
Subject: [PATCH 0420/1129] yoda: 1.7.1 -> 1.7.3 (#49654)

---
 pkgs/development/libraries/physics/yoda/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/libraries/physics/yoda/default.nix b/pkgs/development/libraries/physics/yoda/default.nix
index c86b0ed3d1c8..664d1fa601ee 100644
--- a/pkgs/development/libraries/physics/yoda/default.nix
+++ b/pkgs/development/libraries/physics/yoda/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "yoda-${version}";
-  version = "1.7.1";
+  version = "1.7.3";
 
   src = fetchurl {
     url = "https://www.hepforge.org/archive/yoda/YODA-${version}.tar.bz2";
-    sha256 = "0yq20fnckf6h0a53ghxsgia6ikq71ch9a0w0khq188r7rlg9gmzd";
+    sha256 = "0n40qii2ych5yfx6drj79b3rk29dvc3gysjqs719qgl26d3hkxpb";
   };
 
   pythonPath = []; # python wrapper support
@@ -27,7 +27,7 @@ stdenv.mkDerivation rec {
 
   meta = {
     description = "Provides small set of data analysis (specifically histogramming) classes";
-    license     = stdenv.lib.licenses.gpl2;
+    license     = stdenv.lib.licenses.gpl3;
     homepage    = https://yoda.hepforge.org;
     platforms   = stdenv.lib.platforms.unix;
     maintainers = with stdenv.lib.maintainers; [ veprbl ];

From df28b4b6e5a996a4971a0b32a98e654e4c44a54a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edward=20Tj=C3=B6rnhammar?= <ed@cflags.cc>
Date: Sat, 3 Nov 2018 17:56:04 +0100
Subject: [PATCH 0421/1129] x11basic: init at 1.26

---
 .../compilers/x11basic/default.nix            | 48 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 2 files changed, 50 insertions(+)
 create mode 100644 pkgs/development/compilers/x11basic/default.nix

diff --git a/pkgs/development/compilers/x11basic/default.nix b/pkgs/development/compilers/x11basic/default.nix
new file mode 100644
index 000000000000..a26bc41c5945
--- /dev/null
+++ b/pkgs/development/compilers/x11basic/default.nix
@@ -0,0 +1,48 @@
+{ stdenv, lib, fetchFromGitHub
+, automake, autoconf, readline
+, libX11, bluez, SDL2
+}:
+
+stdenv.mkDerivation rec {
+  pname = "X11basic";
+  version = "1.26";
+  name = pname + "-" + version;
+
+  src = fetchFromGitHub {
+    owner = "kollokollo";
+    repo = pname;
+    rev = version;
+    sha256 = "0rwj9cf496xailply0rgw695bzdladh2dhy7vdqac1pwbkl53nvd";
+  };
+
+  buildInputs = [
+    autoconf automake readline libX11 SDL2 bluez
+  ];
+
+  preConfigure = "cd src;autoconf";
+
+  configureFlags = [
+    "--with-bluetooth"
+    "--with-usb"
+    "--with-readline"
+    "--with-sdl"
+    "--with-x"
+    "--enable-cryptography"
+  ];
+
+  preInstall = ''
+    touch x11basic.{eps,svg}
+    mkdir -p $out/{bin,lib}
+    mkdir -p $out/share/{applications,icons/hicolor/scalable/apps}
+    cp -r ../examples $out/share/.
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = http://x11-basic.sourceforge.net/;
+    description = "A Basic interpreter and compiler with graphics capabilities.";
+    license = licenses.gpl2;
+    maintainers = with maintainers; [ edwtjo ];
+    platforms = platforms.unix;
+  };
+
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index fdf6b93539cc..38ade0014b1b 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -19753,6 +19753,8 @@ with pkgs;
     gtk = gtk2;
   };
 
+  x11basic = callPackage ../development/compilers/x11basic { };
+
   x11vnc = callPackage ../tools/X11/x11vnc { };
 
   x2goclient = libsForQt5.callPackage ../applications/networking/remote/x2goclient { };

From 482228919c80d283130e30afa2bfdee05a5bfb92 Mon Sep 17 00:00:00 2001
From: hyperfekt <adni.online@gmail.com>
Date: Sat, 3 Nov 2018 12:34:35 +0100
Subject: [PATCH 0422/1129] nixos/bcachefs: remove superfluous fsck from initrd

bcachefs checks the filesystem at mount time, therefore no separate fsck binary is needed in initrd.
---
 nixos/modules/system/boot/stage-1-init.sh    | 5 +----
 nixos/modules/tasks/filesystems/bcachefs.nix | 5 -----
 2 files changed, 1 insertion(+), 9 deletions(-)

diff --git a/nixos/modules/system/boot/stage-1-init.sh b/nixos/modules/system/boot/stage-1-init.sh
index 3bc33a20a09f..6a4ac8128ab3 100644
--- a/nixos/modules/system/boot/stage-1-init.sh
+++ b/nixos/modules/system/boot/stage-1-init.sh
@@ -246,10 +246,7 @@ checkFS() {
     if [ "$fsType" = iso9660 -o "$fsType" = udf ]; then return 0; fi
 
     # Don't check resilient COWs as they validate the fs structures at mount time
-    if [ "$fsType" = btrfs -o "$fsType" = zfs ]; then return 0; fi
-
-    # Skip fsck for bcachefs - not implemented yet.
-    if [ "$fsType" = bcachefs ]; then return 0; fi
+    if [ "$fsType" = btrfs -o "$fsType" = zfs -o "$fsType" = bcachefs ]; then return 0; fi
 
     # Skip fsck for nilfs2 - not needed by design and no fsck tool for this filesystem.
     if [ "$fsType" = nilfs2 ]; then return 0; fi
diff --git a/nixos/modules/tasks/filesystems/bcachefs.nix b/nixos/modules/tasks/filesystems/bcachefs.nix
index 227707173a3d..dfb8106d9a5e 100644
--- a/nixos/modules/tasks/filesystems/bcachefs.nix
+++ b/nixos/modules/tasks/filesystems/bcachefs.nix
@@ -17,10 +17,5 @@ in
     boot.kernelPackages = pkgs.linuxPackages_testing_bcachefs;
     boot.initrd.availableKernelModules = mkIf inInitrd [ "bcachefs" ];
 
-    boot.initrd.extraUtilsCommands = mkIf inInitrd
-      ''
-        copy_bin_and_libs ${pkgs.bcachefs-tools}/bin/fsck.bcachefs
-      '';
-
   };
 }

From 1b725def23dcb82281a2f25d2534d5e3ce9b71a7 Mon Sep 17 00:00:00 2001
From: Aaron Andersen <aaron@fosslib.net>
Date: Sat, 3 Nov 2018 13:14:13 -0400
Subject: [PATCH 0423/1129] solr: 4.10.3 -> 7.5.0, refactor service to reflect
 major changes in version bump, NixOS test included

---
 nixos/doc/manual/release-notes/rl-1903.xml |   7 +
 nixos/modules/misc/ids.nix                 |   2 +
 nixos/modules/services/search/solr.nix     | 183 ++++++++-------------
 nixos/release.nix                          |   1 +
 nixos/tests/solr.nix                       |  47 ++++++
 pkgs/servers/search/solr/default.nix       |  23 ++-
 6 files changed, 145 insertions(+), 118 deletions(-)
 create mode 100644 nixos/tests/solr.nix

diff --git a/nixos/doc/manual/release-notes/rl-1903.xml b/nixos/doc/manual/release-notes/rl-1903.xml
index 6121d32346cb..e50624b49064 100644
--- a/nixos/doc/manual/release-notes/rl-1903.xml
+++ b/nixos/doc/manual/release-notes/rl-1903.xml
@@ -182,6 +182,13 @@
       options can occour more than once in the configuration.
     </para>
    </listitem>
+   <listitem>
+    <para>
+      The <literal>solr</literal> package has been upgraded from 4.10.3 to 7.5.0 and has undergone
+      some major changes. The <literal>services.solr</literal> module has been updated to reflect
+      these changes. Please review http://lucene.apache.org/solr/ carefully before upgrading.
+    </para>
+   </listitem>
   </itemizedlist>
  </section>
 
diff --git a/nixos/modules/misc/ids.nix b/nixos/modules/misc/ids.nix
index 16737efb1856..6e7f0a007bc2 100644
--- a/nixos/modules/misc/ids.nix
+++ b/nixos/modules/misc/ids.nix
@@ -333,6 +333,7 @@
       lidarr = 306;
       slurm = 307;
       kapacitor = 308;
+      solr = 309;
 
       # When adding a uid, make sure it doesn't match an existing gid. And don't use uids above 399!
 
@@ -626,6 +627,7 @@
       lidarr = 306;
       slurm = 307;
       kapacitor = 308;
+      solr = 309;
 
       # When adding a gid, make sure it doesn't match an existing
       # uid. Users and groups with the same name should have equal
diff --git a/nixos/modules/services/search/solr.nix b/nixos/modules/services/search/solr.nix
index 90140a337ed8..7200c40e89f7 100644
--- a/nixos/modules/services/search/solr.nix
+++ b/nixos/modules/services/search/solr.nix
@@ -6,142 +6,105 @@ let
 
   cfg = config.services.solr;
 
-  # Assemble all jars needed for solr
-  solrJars = pkgs.stdenv.mkDerivation {
-    name = "solr-jars";
-
-    src = pkgs.fetchurl {
-      url = http://archive.apache.org/dist/tomcat/tomcat-5/v5.5.36/bin/apache-tomcat-5.5.36.tar.gz;
-      sha256 = "01mzvh53wrs1p2ym765jwd00gl6kn8f9k3nhdrnhdqr8dhimfb2p";
-    };
-
-    installPhase = ''
-      mkdir -p $out/lib
-      cp common/lib/*.jar $out/lib/
-      ln -s ${pkgs.ant}/lib/ant/lib/ant.jar $out/lib/
-      ln -s ${cfg.solrPackage}/lib/ext/* $out/lib/
-      ln -s ${pkgs.jdk.home}/lib/tools.jar $out/lib/
-    '' + optionalString (cfg.extraJars != []) ''
-      for f in ${concatStringsSep " " cfg.extraJars}; do
-         cp $f $out/lib
-      done
-    '';
-  };
-
-in {
+in
 
+{
   options = {
     services.solr = {
-      enable = mkOption {
-        type = types.bool;
-        default = false;
-        description = ''
-          Enables the solr service.
-        '';
-      };
+      enable = mkEnableOption "Enables the solr service.";
 
-      javaPackage = mkOption {
-        type = types.package;
-        default = pkgs.jre;
-        defaultText = "pkgs.jre";
-        description = ''
-          Which Java derivation to use for running solr.
-        '';
-      };
-
-      solrPackage = mkOption {
+      package = mkOption {
         type = types.package;
         default = pkgs.solr;
         defaultText = "pkgs.solr";
-        description = ''
-          Which solr derivation to use for running solr.
-        '';
+        description = "Which Solr package to use.";
       };
 
-      extraJars = mkOption {
-        type = types.listOf types.path;
-        default = [];
-        description = ''
-          List of paths pointing to jars. Jars are copied to commonLibFolder to be available to java/solr.
-        '';
+      port = mkOption {
+        type = types.int;
+        default = 8983;
+        description = "Port on which Solr is ran.";
       };
 
-      log4jConfiguration = mkOption {
-        type = types.lines;
-        default = ''
-          log4j.rootLogger=INFO, stdout
-          log4j.appender.stdout=org.apache.log4j.ConsoleAppender
-          log4j.appender.stdout.Target=System.out
-          log4j.appender.stdout.layout=org.apache.log4j.PatternLayout
-          log4j.appender.stdout.layout.ConversionPattern=%d{yyyy-MM-dd HH:mm:ss} %-5p %c{1}:%L - %m%n
-        '';
-        description = ''
-          Contents of the <literal>log4j.properties</literal> used. By default,
-          everything is logged to stdout (picked up by systemd) with level INFO.
-        '';
-      };
-
-      user = mkOption {
-        type = types.str;
-        description = ''
-          The user that should run the solr process and.
-          the working directories.
-        '';
-      };
-
-      group = mkOption {
-        type = types.str;
-        description = ''
-          The group that will own the working directory.
-        '';
-      };
-
-      solrHome = mkOption {
-        type = types.str;
-        description = ''
-          The solr home directory. It is your own responsibility to
-          make sure this directory contains a working solr configuration,
-          and is writeable by the the user running the solr service.
-          Failing to do so, the solr will not start properly.
-        '';
+      stateDir = mkOption {
+        type = types.path;
+        default = "/var/lib/solr";
+        description = "The solr home directory containing config, data, and logging files.";
       };
 
       extraJavaOptions = mkOption {
         type = types.listOf types.str;
         default = [];
-        description = ''
-          Extra command line options given to the java process running
-          solr.
-        '';
+        description = "Extra command line options given to the java process running Solr.";
       };
 
-      extraWinstoneOptions = mkOption {
-        type = types.listOf types.str;
-        default = [];
-        description = ''
-          Extra command line options given to the Winstone, which is
-          the servlet container hosting solr.
-        '';
+      user = mkOption {
+        type = types.str;
+        default = "solr";
+        description = "User under which Solr is ran.";
+      };
+
+      group = mkOption {
+        type = types.str;
+        default = "solr";
+        description = "Group under which Solr is ran.";
       };
     };
   };
 
   config = mkIf cfg.enable {
 
-    services.winstone.solr = {
-      serviceName = "solr";
-      inherit (cfg) user group javaPackage;
-      warFile = "${cfg.solrPackage}/lib/solr.war";
-      extraOptions = [
-        "--commonLibFolder=${solrJars}/lib"
-        "--useJasper"
-      ] ++ cfg.extraWinstoneOptions;
-      extraJavaOptions = [
-        "-Dsolr.solr.home=${cfg.solrHome}"
-        "-Dlog4j.configuration=file://${pkgs.writeText "log4j.properties" cfg.log4jConfiguration}"
-      ] ++ cfg.extraJavaOptions;
+    environment.systemPackages = [ cfg.package ];
+
+    systemd.services.solr = {
+      after = [ "network.target" "remote-fs.target" "nss-lookup.target" "systemd-journald-dev-log.socket" ];
+      wantedBy = [ "multi-user.target" ];
+
+      environment = {
+        SOLR_HOME = "${cfg.stateDir}/data";
+        LOG4J_PROPS = "${cfg.stateDir}/log4j2.xml";
+        SOLR_LOGS_DIR = "${cfg.stateDir}/logs";
+        SOLR_PORT = "${toString cfg.port}";
+      };
+      path = with pkgs; [
+        gawk
+        procps
+      ];
+      preStart = ''
+        mkdir -p "${cfg.stateDir}/data";
+        mkdir -p "${cfg.stateDir}/logs";
+
+        if ! test -e "${cfg.stateDir}/data/solr.xml"; then
+          install -D -m0640 ${cfg.package}/server/solr/solr.xml "${cfg.stateDir}/data/solr.xml"
+          install -D -m0640 ${cfg.package}/server/solr/zoo.cfg "${cfg.stateDir}/data/zoo.cfg"
+        fi
+
+        if ! test -e "${cfg.stateDir}/log4j2.xml"; then
+          install -D -m0640 ${cfg.package}/server/resources/log4j2.xml "${cfg.stateDir}/log4j2.xml"
+        fi
+      '';
+
+      serviceConfig = {
+        User = cfg.user;
+        Group = cfg.group;
+        ExecStart="${cfg.package}/bin/solr start -f -a \"${concatStringsSep " " cfg.extraJavaOptions}\"";
+        ExecStop="${cfg.package}/bin/solr stop";
+      };
     };
 
+    users.users = optionalAttrs (cfg.user == "solr") (singleton
+      { name = "solr";
+        group = cfg.group;
+        home = cfg.stateDir;
+        createHome = true;
+        uid = config.ids.uids.solr;
+      });
+
+    users.groups = optionalAttrs (cfg.group == "solr") (singleton
+      { name = "solr";
+        gid = config.ids.gids.solr;
+      });
+
   };
 
 }
diff --git a/nixos/release.nix b/nixos/release.nix
index c3a10c9d3300..4647f28be186 100644
--- a/nixos/release.nix
+++ b/nixos/release.nix
@@ -410,6 +410,7 @@ in rec {
   tests.slurm = callTest tests/slurm.nix {};
   tests.smokeping = callTest tests/smokeping.nix {};
   tests.snapper = callTest tests/snapper.nix {};
+  tests.solr = callTest tests/solr.nix {};
   #tests.statsd = callTest tests/statsd.nix {}; # statsd is broken: #45946
   tests.strongswan-swanctl = callTest tests/strongswan-swanctl.nix {};
   tests.sudo = callTest tests/sudo.nix {};
diff --git a/nixos/tests/solr.nix b/nixos/tests/solr.nix
new file mode 100644
index 000000000000..9ba3863411ea
--- /dev/null
+++ b/nixos/tests/solr.nix
@@ -0,0 +1,47 @@
+import ./make-test.nix ({ pkgs, lib, ... }:
+{
+  name = "solr";
+  meta.maintainers = [ lib.maintainers.aanderse ];
+
+  machine =
+    { config, pkgs, ... }:
+    {
+      # Ensure the virtual machine has enough memory for Solr to avoid the following error:
+      #
+      #   OpenJDK 64-Bit Server VM warning:
+      #     INFO: os::commit_memory(0x00000000e8000000, 402653184, 0)
+      #     failed; error='Cannot allocate memory' (errno=12)
+      #
+      #   There is insufficient memory for the Java Runtime Environment to continue.
+      #   Native memory allocation (mmap) failed to map 402653184 bytes for committing reserved memory.
+      virtualisation.memorySize = 2000;
+
+      services.solr.enable = true;
+    };
+
+  testScript = ''
+    startAll;
+
+    $machine->waitForUnit('solr.service');
+    $machine->waitForOpenPort('8983');
+    $machine->succeed('curl --fail http://localhost:8983/solr/');
+
+    # adapted from pkgs.solr/examples/films/README.txt
+    $machine->succeed('sudo -u solr solr create -c films');
+    $machine->succeed(q(curl http://localhost:8983/solr/films/schema -X POST -H 'Content-type:application/json' --data-binary '{
+      "add-field" : {
+        "name":"name",
+        "type":"text_general",
+        "multiValued":false,
+        "stored":true
+      },
+      "add-field" : {
+        "name":"initial_release_date",
+        "type":"pdate",
+        "stored":true
+      }
+    }')) =~ /"status":0/ or die;
+    $machine->succeed('sudo -u solr post -c films ${pkgs.solr}/example/films/films.json');
+    $machine->succeed('curl http://localhost:8983/solr/films/query?q=name:batman') =~ /"name":"Batman Begins"/ or die;
+  '';
+})
diff --git a/pkgs/servers/search/solr/default.nix b/pkgs/servers/search/solr/default.nix
index 0326784b2ac8..04e85212f3cd 100644
--- a/pkgs/servers/search/solr/default.nix
+++ b/pkgs/servers/search/solr/default.nix
@@ -1,20 +1,27 @@
-{ stdenv, fetchurl }:
+{ stdenv, fetchurl, jre, makeWrapper }:
 
 stdenv.mkDerivation rec {
   name = "solr-${version}";
-  version = "4.10.3";
+  version = "7.5.0";
 
   src = fetchurl {
     url = "mirror://apache/lucene/solr/${version}/solr-${version}.tgz";
-    sha256 = "1dp269jka4q62qhv47j91wsrsnbxfn23lsx6qcycbijrlyh28w5c";
+    sha256 = "1g6f58j2pzb73phj4hfri9mj7vmql72by7w3xrbq1pbnqgzxmhpa";
   };
 
-  phases = [ "unpackPhase" "installPhase" ];
+  nativeBuildInputs = [ makeWrapper ];
 
   installPhase = ''
-    mkdir -p $out/lib
-    cp dist/${name}.war $out/lib/solr.war
-    cp -r example/lib/ext $out/lib/ext
+    mkdir -p $out $out/bin
+
+    cp -r bin/solr bin/post $out/bin/
+    cp -r contrib $out/
+    cp -r dist $out/
+    cp -r example $out/
+    cp -r server $out/
+
+    wrapProgram $out/bin/solr --set JAVA_HOME "${jre}"
+    wrapProgram $out/bin/post --set JAVA_HOME "${jre}"
   '';
 
   meta = with stdenv.lib; {
@@ -22,7 +29,7 @@ stdenv.mkDerivation rec {
     description = "Open source enterprise search platform from the Apache Lucene project";
     license = licenses.asl20;
     platforms = platforms.all;
-    maintainers = [ maintainers.rickynils maintainers.domenkozar ];
+    maintainers = [ maintainers.rickynils maintainers.domenkozar maintainers.aanderse ];
   };
 
 }

From 15c2fb7ba17b80dad588b8a885f6411881e2684a Mon Sep 17 00:00:00 2001
From: gnidorah <gnidorah@users.noreply.github.com>
Date: Sat, 3 Nov 2018 20:27:40 +0300
Subject: [PATCH 0424/1129] sway-beta module: add missing pieces

---
 nixos/modules/programs/sway-beta.nix | 33 ++++++++++++++++++++++++----
 1 file changed, 29 insertions(+), 4 deletions(-)

diff --git a/nixos/modules/programs/sway-beta.nix b/nixos/modules/programs/sway-beta.nix
index 04f2e0662b86..e651ea4cca33 100644
--- a/nixos/modules/programs/sway-beta.nix
+++ b/nixos/modules/programs/sway-beta.nix
@@ -5,6 +5,15 @@ with lib;
 let
   cfg = config.programs.sway-beta;
   swayPackage = cfg.package;
+
+  swayWrapped = pkgs.writeShellScriptBin "sway" ''
+    ${cfg.extraSessionCommands}
+    exec ${pkgs.dbus.dbus-launch} --exit-with-session ${swayPackage}/bin/sway
+  '';
+  swayJoined = pkgs.symlinkJoin {
+    name = "sway-joined";
+    paths = [ swayWrapped swayPackage ];
+  };
 in {
   options.programs.sway-beta = {
     enable = mkEnableOption ''
@@ -20,13 +29,30 @@ in {
       '';
     };
 
+    extraSessionCommands = mkOption {
+      type = types.lines;
+      default = "";
+      example = ''
+        export SDL_VIDEODRIVER=wayland
+        # needs qt5.qtwayland in systemPackages
+        export QT_QPA_PLATFORM=wayland
+        export QT_WAYLAND_DISABLE_WINDOWDECORATION="1"
+        # Fix for some Java AWT applications (e.g. Android Studio),
+        # use this if they aren't displayed properly:
+        export _JAVA_AWT_WM_NONREPARENTING=1
+      '';
+      description = ''
+        Shell commands executed just before Sway is started.
+      '';
+    };
+
     extraPackages = mkOption {
       type = with types; listOf package;
       default = with pkgs; [
-        xwayland dmenu
+        xwayland rxvt_unicode dmenu
       ];
       defaultText = literalExample ''
-        with pkgs; [ xwayland dmenu ];
+        with pkgs; [ xwayland rxvt_unicode dmenu ];
       '';
       example = literalExample ''
         with pkgs; [
@@ -42,7 +68,7 @@ in {
   };
 
   config = mkIf cfg.enable {
-    environment.systemPackages = [ swayPackage ] ++ cfg.extraPackages;
+    environment.systemPackages = [ swayJoined ] ++ cfg.extraPackages;
     security.pam.services.swaylock = {};
     hardware.opengl.enable = mkDefault true;
     fonts.enableDefaultFonts = mkDefault true;
@@ -51,4 +77,3 @@ in {
 
   meta.maintainers = with lib.maintainers; [ gnidorah primeos colemickens ];
 }
-

From 2cb7f5fb1e502fe5502d37fce0a9b7a16ea24fd0 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Niklas=20Hamb=C3=BCchen?= <mail@nh2.me>
Date: Fri, 26 Oct 2018 18:07:56 +0200
Subject: [PATCH 0425/1129] consul: 0.9.3 -> 1.3.0.
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Removes the old UI build tooling; it is no longer necessary
because as of 1.2.0 it's bundled into the server binary.
It doesn't even need to have JS built, because it's bundled into
the release commit's source tree (see #48714).

The UI is enabled by default, so the NixOS service is
updated to directly use `ui = webUi;` now.

Fixes #48714.
Fixes #44192.
Fixes #41243.
Fixes #35602.

Signed-off-by: Niklas Hambüchen <mail@nh2.me>
---
 nixos/modules/services/networking/consul.nix |  7 ++-
 pkgs/servers/consul/Gemfile                  |  5 --
 pkgs/servers/consul/Gemfile.lock             | 25 --------
 pkgs/servers/consul/default.nix              | 19 +++---
 pkgs/servers/consul/gemset.nix               | 62 --------------------
 pkgs/servers/consul/ui-no-bundle-exec.patch  | 17 ------
 pkgs/servers/consul/ui.nix                   | 41 -------------
 pkgs/top-level/all-packages.nix              |  2 -
 8 files changed, 16 insertions(+), 162 deletions(-)
 delete mode 100644 pkgs/servers/consul/Gemfile
 delete mode 100644 pkgs/servers/consul/Gemfile.lock
 delete mode 100644 pkgs/servers/consul/gemset.nix
 delete mode 100644 pkgs/servers/consul/ui-no-bundle-exec.patch
 delete mode 100644 pkgs/servers/consul/ui.nix

diff --git a/nixos/modules/services/networking/consul.nix b/nixos/modules/services/networking/consul.nix
index ab3f81037681..0e90fed788b9 100644
--- a/nixos/modules/services/networking/consul.nix
+++ b/nixos/modules/services/networking/consul.nix
@@ -6,9 +6,10 @@ let
   dataDir = "/var/lib/consul";
   cfg = config.services.consul;
 
-  configOptions = { data_dir = dataDir; } //
-    (if cfg.webUi then { ui_dir = "${cfg.package.ui}"; } else { }) //
-    cfg.extraConfig;
+  configOptions = {
+    data_dir = dataDir;
+    ui = cfg.webUi;
+  } // cfg.extraConfig;
 
   configFiles = [ "/etc/consul.json" "/etc/consul-addrs.json" ]
     ++ cfg.extraConfigFiles;
diff --git a/pkgs/servers/consul/Gemfile b/pkgs/servers/consul/Gemfile
deleted file mode 100644
index 0e782af6b000..000000000000
--- a/pkgs/servers/consul/Gemfile
+++ /dev/null
@@ -1,5 +0,0 @@
-# A sample Gemfile
-source "https://rubygems.org"
-
-gem "uglifier"
-gem "sass"
diff --git a/pkgs/servers/consul/Gemfile.lock b/pkgs/servers/consul/Gemfile.lock
deleted file mode 100644
index 60a565f66951..000000000000
--- a/pkgs/servers/consul/Gemfile.lock
+++ /dev/null
@@ -1,25 +0,0 @@
-GEM
-  remote: https://rubygems.org/
-  specs:
-    execjs (2.7.0)
-    ffi (1.9.23)
-    rb-fsevent (0.10.3)
-    rb-inotify (0.9.10)
-      ffi (>= 0.5.0, < 2)
-    sass (3.5.6)
-      sass-listen (~> 4.0.0)
-    sass-listen (4.0.0)
-      rb-fsevent (~> 0.9, >= 0.9.4)
-      rb-inotify (~> 0.9, >= 0.9.7)
-    uglifier (4.1.10)
-      execjs (>= 0.3.0, < 3)
-
-PLATFORMS
-  ruby
-
-DEPENDENCIES
-  sass
-  uglifier
-
-BUNDLED WITH
-   1.14.6
diff --git a/pkgs/servers/consul/default.nix b/pkgs/servers/consul/default.nix
index 5cf192791000..d1dcd78667f0 100644
--- a/pkgs/servers/consul/default.nix
+++ b/pkgs/servers/consul/default.nix
@@ -1,22 +1,27 @@
-{ stdenv, buildGoPackage, consul-ui, fetchFromGitHub }:
+{ stdenv, buildGoPackage, fetchFromGitHub }:
 
 buildGoPackage rec {
   name = "consul-${version}";
-  version = "0.9.3";
+  version = "1.3.0";
   rev = "v${version}";
 
   goPackagePath = "github.com/hashicorp/consul";
 
+  # Note: Currently only release tags are supported, because they have the Consul UI
+  # vendored. See
+  #   https://github.com/NixOS/nixpkgs/pull/48714#issuecomment-433454834
+  # If you want to use a non-release commit as `src`, you probably want to improve
+  # this derivation so that it can build the UI's JavaScript from source.
+  # See https://github.com/NixOS/nixpkgs/pull/49082 for something like that.
+  # Or, if you want to patch something that doesn't touch the UI, you may want
+  # to apply your changes as patches on top of a release commit.
   src = fetchFromGitHub {
     owner = "hashicorp";
     repo = "consul";
     inherit rev;
-    sha256 = "1176frp7kimpycsmz9wrbizf46jgxr8jq7hz5w4q1x90lswvrxv3";
+    sha256 = "1zv84snvrjm74w3v3rr27linsbxj00m73xd047sb78a4766xs2h0";
   };
 
-  # Keep consul.ui for backward compatability
-  passthru.ui = consul-ui;
-
   preBuild = ''
     buildFlagsArray+=("-ldflags" "-X github.com/hashicorp/consul/version.GitDescribe=v${version} -X github.com/hashicorp/consul/version.Version=${version} -X github.com/hashicorp/consul/version.VersionPrerelease=")
   '';
@@ -26,6 +31,6 @@ buildGoPackage rec {
     homepage = https://www.consul.io/;
     platforms = platforms.linux ++ platforms.darwin;
     license = licenses.mpl20;
-    maintainers = with maintainers; [ pradeepchhetri ];
+    maintainers = with maintainers; [ pradeepchhetri vdemeester nh2 ];
   };
 }
diff --git a/pkgs/servers/consul/gemset.nix b/pkgs/servers/consul/gemset.nix
deleted file mode 100644
index 2a5425ccf5f5..000000000000
--- a/pkgs/servers/consul/gemset.nix
+++ /dev/null
@@ -1,62 +0,0 @@
-{
-  execjs = {
-    source = {
-      remotes = ["https://rubygems.org"];
-      sha256 = "1yz55sf2nd3l666ms6xr18sm2aggcvmb8qr3v53lr4rir32y1yp1";
-      type = "gem";
-    };
-    version = "2.7.0";
-  };
-  ffi = {
-    source = {
-      remotes = ["https://rubygems.org"];
-      sha256 = "0zw6pbyvmj8wafdc7l5h7w20zkp1vbr2805ql5d941g2b20pk4zr";
-      type = "gem";
-    };
-    version = "1.9.23";
-  };
-  rb-fsevent = {
-    source = {
-      remotes = ["https://rubygems.org"];
-      sha256 = "1lm1k7wpz69jx7jrc92w3ggczkjyjbfziq5mg62vjnxmzs383xx8";
-      type = "gem";
-    };
-    version = "0.10.3";
-  };
-  rb-inotify = {
-    dependencies = ["ffi"];
-    source = {
-      remotes = ["https://rubygems.org"];
-      sha256 = "0yfsgw5n7pkpyky6a9wkf1g9jafxb0ja7gz0qw0y14fd2jnzfh71";
-      type = "gem";
-    };
-    version = "0.9.10";
-  };
-  sass = {
-    dependencies = ["sass-listen"];
-    source = {
-      remotes = ["https://rubygems.org"];
-      sha256 = "19wyzp9qsg8hdkkxlsv713w0qmy66qrdp0shj42587ssx4qhrlag";
-      type = "gem";
-    };
-    version = "3.5.6";
-  };
-  sass-listen = {
-    dependencies = ["rb-fsevent" "rb-inotify"];
-    source = {
-      remotes = ["https://rubygems.org"];
-      sha256 = "0xw3q46cmahkgyldid5hwyiwacp590zj2vmswlll68ryvmvcp7df";
-      type = "gem";
-    };
-    version = "4.0.0";
-  };
-  uglifier = {
-    dependencies = ["execjs"];
-    source = {
-      remotes = ["https://rubygems.org"];
-      sha256 = "0dycp9c5xiricla6sgvg0vf22i3axs5k1v1607dvl7nv1xkkaczi";
-      type = "gem";
-    };
-    version = "4.1.10";
-  };
-}
\ No newline at end of file
diff --git a/pkgs/servers/consul/ui-no-bundle-exec.patch b/pkgs/servers/consul/ui-no-bundle-exec.patch
deleted file mode 100644
index 5707b871049b..000000000000
--- a/pkgs/servers/consul/ui-no-bundle-exec.patch
+++ /dev/null
@@ -1,17 +0,0 @@
-diff --git a/ui/scripts/dist.sh b/ui/scripts/dist.sh
-index 0ad6e28e..db340da0 100755
---- a/ui/scripts/dist.sh
-+++ b/ui/scripts/dist.sh
-@@ -15,10 +15,9 @@ DEPLOY="../pkg/web_ui"
- rm -rf $DEPLOY
- mkdir -p $DEPLOY
- 
--bundle check >/dev/null 2>&1 || bundle install
--bundle exec sass styles/base.scss static/base.css
-+sass styles/base.scss static/base.css
- 
--bundle exec ruby scripts/compile.rb
-+ruby scripts/compile.rb
- 
- # Copy into deploy
- shopt -s dotglob
diff --git a/pkgs/servers/consul/ui.nix b/pkgs/servers/consul/ui.nix
deleted file mode 100644
index da9b518bad73..000000000000
--- a/pkgs/servers/consul/ui.nix
+++ /dev/null
@@ -1,41 +0,0 @@
-{ stdenv, consul, ruby, bundlerEnv, zip, nodejs }:
-
-let
-  # `sass` et al
-  gems = bundlerEnv {
-    name = "consul-ui-deps";
-    gemdir = ./.;
-  };
-in
-
-stdenv.mkDerivation {
-  name = "consul-ui-${consul.version}";
-
-  src = consul.src;
-
-  buildInputs = [ ruby gems zip nodejs ];
-
-  patches = [ ./ui-no-bundle-exec.patch ];
-
-  postPatch = "patchShebangs ./ui/scripts/dist.sh";
-
-  buildPhase = ''
-    # Build ui static files
-    cd ui
-    make dist
-  '';
-
-  installPhase = ''
-    # Install ui static files
-    mkdir -p $out
-    mv ../pkg/web_ui/* $out
-  '';
-
-  meta = with stdenv.lib; {
-    homepage    = https://www.consul.io/;
-    description = "A tool for service discovery, monitoring and configuration";
-    maintainers = with maintainers; [ cstrahan wkennington ];
-    license     = licenses.mpl20 ;
-    platforms   = platforms.unix;
-  };
-}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 38ade0014b1b..d647840fc18d 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -1136,8 +1136,6 @@ with pkgs;
 
   consul = callPackage ../servers/consul { };
 
-  consul-ui = callPackage ../servers/consul/ui.nix { };
-
   consul-alerts = callPackage ../servers/monitoring/consul-alerts { };
 
   consul-template = callPackage ../tools/system/consul-template { };

From 32c2d485244efa80c704cd17e58dafdffd1616bf Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Niklas=20Hamb=C3=BCchen?= <mail@nh2.me>
Date: Fri, 26 Oct 2018 18:25:11 +0200
Subject: [PATCH 0426/1129] nixos manual: Add changelog for consul
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Signed-off-by: Niklas Hambüchen <mail@nh2.me>
---
 nixos/doc/manual/release-notes/rl-1903.xml | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/nixos/doc/manual/release-notes/rl-1903.xml b/nixos/doc/manual/release-notes/rl-1903.xml
index 6121d32346cb..fb5d475f693a 100644
--- a/nixos/doc/manual/release-notes/rl-1903.xml
+++ b/nixos/doc/manual/release-notes/rl-1903.xml
@@ -162,6 +162,14 @@
      has been renamed to <varname>postgresql_9_6</varname>.
     </para>
    </listitem>
+   <listitem>
+    <para>
+     Package <literal>consul-ui</literal> and passthrough <literal>consul.ui</literal> have been removed.
+     The package <literal>consul</literal> now uses upstream releases that vendor the UI into the binary.
+     See <link xlink:href="https://github.com/NixOS/nixpkgs/pull/48714#issuecomment-433454834">#48714</link>
+     for details.
+    </para>
+   </listitem>
    <listitem>
     <para>
       Slurm introduces the new option

From 666e0ab1dd4c9d58f93882b0d012a49823c4f99b Mon Sep 17 00:00:00 2001
From: Robert Hensing <robert@roberthensing.nl>
Date: Sat, 3 Nov 2018 19:05:31 +0100
Subject: [PATCH 0427/1129] pkgs.nixos: Add note about
 systemd.services.*.runner not being systemd

---
 pkgs/top-level/all-packages.nix | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 84b3adf72974..69549dd88ee1 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -22121,7 +22121,10 @@ with pkgs;
                # ...
              };
 
-             # This exports a runner for nginx
+             # Use config.system.build to exports relevant parts of a
+             # configuration. The runner attribute should not be
+             # considered a fully general replacement for systemd
+             # functionality.
              config.system.build.run-nginx = config.systemd.services.nginx.runner;
            });
          in

From f3999f6b3c693061551694ceb56d4102fad6b91c Mon Sep 17 00:00:00 2001
From: Averell Dalton <averell+nixpkgs@rxd4.com>
Date: Sat, 3 Nov 2018 18:57:45 +0100
Subject: [PATCH 0428/1129] Add averelld to maintainers

---
 maintainers/maintainer-list.nix | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index ec4289f19ead..60354432ad9b 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -406,6 +406,11 @@
     github = "AveryLychee";
     name = "Avery Lychee";
   };
+  averelld = {
+    email = "averell+nixos@rxd4.com";
+    github = "averelld";
+    name = "averelld";
+  };
   avnik = {
     email = "avn@avnik.info";
     github = "avnik";

From c93caa5a672da36fdc0052b718c9030c9cfc3c06 Mon Sep 17 00:00:00 2001
From: Averell Dalton <averell+nixpkgs@rxd4.com>
Date: Sat, 3 Nov 2018 19:00:11 +0100
Subject: [PATCH 0429/1129] rstudio-preview: init at f33fb2b2

---
 .../editors/rstudio/clang-location.patch      |  25 ++++
 .../editors/rstudio/fix-cmake.patch           |  15 +++
 pkgs/applications/editors/rstudio/preview.nix | 119 ++++++++++++++++++
 pkgs/top-level/all-packages.nix               |   4 +
 4 files changed, 163 insertions(+)
 create mode 100644 pkgs/applications/editors/rstudio/clang-location.patch
 create mode 100644 pkgs/applications/editors/rstudio/fix-cmake.patch
 create mode 100644 pkgs/applications/editors/rstudio/preview.nix

diff --git a/pkgs/applications/editors/rstudio/clang-location.patch b/pkgs/applications/editors/rstudio/clang-location.patch
new file mode 100644
index 000000000000..402abdd85636
--- /dev/null
+++ b/pkgs/applications/editors/rstudio/clang-location.patch
@@ -0,0 +1,25 @@
+diff --git i/src/cpp/core/libclang/LibClang.cpp w/src/cpp/core/libclang/LibClang.cpp
+index ec12a3a1ff..8c81b633ae 100644
+--- i/src/cpp/core/libclang/LibClang.cpp
++++ w/src/cpp/core/libclang/LibClang.cpp
+@@ -54,7 +54,7 @@ std::vector<std::string> defaultCompileArgs(LibraryVersion version)
+ 
+    // we need to add in the associated libclang headers as
+    // they are not discovered / used by default during compilation
+-   FilePath llvmPath = s_libraryPath.parent().parent();
++   FilePath llvmPath("@clang@");
+    boost::format fmt("%1%/lib/clang/%2%/include");
+    fmt % llvmPath.absolutePath() % version.asString();
+    std::string includePath = fmt.str();
+@@ -77,10 +77,7 @@ std::vector<std::string> systemClangVersions()
+ #elif defined(__unix__)
+    // default set of versions
+    clangVersions = {
+-      "/usr/lib/libclang.so",
+-      "/usr/lib/llvm/libclang.so",
+-      "/usr/lib64/libclang.so",
+-      "/usr/lib64/llvm/libclang.so",
++      "@libclang.so@"
+    };
+    
+    // iterate through the set of available 'llvm' directories
diff --git a/pkgs/applications/editors/rstudio/fix-cmake.patch b/pkgs/applications/editors/rstudio/fix-cmake.patch
new file mode 100644
index 000000000000..3effc0eaa32b
--- /dev/null
+++ b/pkgs/applications/editors/rstudio/fix-cmake.patch
@@ -0,0 +1,15 @@
+diff --git a/src/cpp/desktop/CMakeLists.txt b/src/cpp/desktop/CMakeLists.txt
+index f5701bf735..27af4148ff 100644
+--- a/src/cpp/desktop/CMakeLists.txt
++++ b/src/cpp/desktop/CMakeLists.txt
+@@ -112,6 +112,7 @@ find_package(Qt5WebEngine REQUIRED)
+ find_package(Qt5WebEngineWidgets REQUIRED)
+ find_package(Qt5PrintSupport REQUIRED)
+ find_package(Qt5Quick REQUIRED)
++find_package(Qt5QuickWidgets REQUIRED)
+ find_package(Qt5Positioning REQUIRED)
+ find_package(Qt5Sensors REQUIRED)
+ find_package(Qt5Svg REQUIRED)
+-- 
+2.17.1
+
diff --git a/pkgs/applications/editors/rstudio/preview.nix b/pkgs/applications/editors/rstudio/preview.nix
new file mode 100644
index 000000000000..340aeec15e0f
--- /dev/null
+++ b/pkgs/applications/editors/rstudio/preview.nix
@@ -0,0 +1,119 @@
+{ stdenv, fetchurl, fetchFromGitHub, makeDesktopItem, cmake, boost, zlib
+, openssl, R, qtbase, qtdeclarative, qtsensors, qtwebengine, qtwebchannel
+, libuuid, hunspellDicts, unzip, ant, jdk, gnumake, makeWrapper, pandoc
+, llvmPackages
+}:
+
+let
+  rev = "f33fb2b2f1";
+  ginVer = "2.1.2";
+  gwtVer = "2.8.1";
+in
+stdenv.mkDerivation rec {
+  name = "RStudio-preview-${rev}";
+
+  nativeBuildInputs = [ cmake unzip ant jdk makeWrapper pandoc ];
+
+  buildInputs = [ boost zlib openssl R qtbase qtdeclarative qtsensors
+                  qtwebengine qtwebchannel libuuid ];
+
+  src = fetchFromGitHub {
+    owner = "rstudio";
+    repo = "rstudio";
+    inherit rev;
+    sha256 = "0v3vzqjp74c3m4h9l6w2lrdnjqaimdjzbf7vhnlxj2qa0lwsnykb";
+  };
+
+  # Hack RStudio to only use the input R and provided libclang.
+  patches = [ ./r-location.patch ./clang-location.patch ];
+  postPatch = ''
+    substituteInPlace src/cpp/core/r_util/REnvironmentPosix.cpp --replace '@R@' ${R}
+    substituteInPlace src/cpp/core/libclang/LibClang.cpp \
+      --replace '@clang@' ${llvmPackages.clang.cc} \
+      --replace '@libclang.so@' ${llvmPackages.clang.cc.lib}/lib/libclang.so
+  '';
+
+  ginSrc = fetchurl {
+    url = "https://s3.amazonaws.com/rstudio-buildtools/gin-${ginVer}.zip";
+    sha256 = "16jzmljravpz6p2rxa87k5f7ir8vs7ya75lnfybfajzmci0p13mr";
+  };
+
+  gwtSrc = fetchurl {
+    url = "https://s3.amazonaws.com/rstudio-buildtools/gwt-${gwtVer}.zip";
+    sha256 = "19x000m3jwnkqgi6ic81lkzyjvvxcfacw2j0vcfcaknvvagzhyhb";
+  };
+
+  hunspellDictionaries = with stdenv.lib; filter isDerivation (attrValues hunspellDicts);
+
+  mathJaxSrc = fetchurl {
+    url = https://s3.amazonaws.com/rstudio-buildtools/mathjax-26.zip;
+    sha256 = "0wbcqb9rbfqqvvhqr1pbqax75wp8ydqdyhp91fbqfqp26xzjv6lk";
+  };
+
+  rsconnectSrc = fetchFromGitHub {
+    owner = "rstudio";
+    repo = "rsconnect";
+    rev = "984745d8";
+    sha256 = "037z0y32k1gdda192y5qn5hi7wp8wyap44mkjlklrgcqkmlcylb9";
+  };
+
+  preConfigure =
+    ''
+      GWT_LIB_DIR=src/gwt/lib
+
+      mkdir -p $GWT_LIB_DIR/gin/${ginVer}
+      unzip ${ginSrc} -d $GWT_LIB_DIR/gin/${ginVer}
+
+      unzip ${gwtSrc}
+      mkdir -p $GWT_LIB_DIR/gwt
+      mv gwt-${gwtVer} $GWT_LIB_DIR/gwt/${gwtVer}
+
+      mkdir dependencies/common/dictionaries
+      for dict in ${builtins.concatStringsSep " " hunspellDictionaries}; do
+        for i in "$dict/share/hunspell/"*; do
+          ln -sv $i dependencies/common/dictionaries/
+        done
+      done
+
+      unzip ${mathJaxSrc} -d dependencies/common/mathjax-26
+
+      mkdir -p dependencies/common/pandoc
+      cp ${pandoc}/bin/pandoc dependencies/common/pandoc/
+
+      cp -r ${rsconnectSrc} dependencies/common/rsconnect
+      pushd dependencies/common
+      ${R}/bin/R CMD build -d --no-build-vignettes rsconnect
+      popd
+    '';
+
+  enableParallelBuilding = true;
+
+  cmakeFlags = [ "-DRSTUDIO_TARGET=Desktop" "-DQT_QMAKE_EXECUTABLE=$NIX_QT5_TMP/bin/qmake" ];
+
+  desktopItem = makeDesktopItem {
+    name = name;
+    exec = "rstudio %F";
+    icon = "rstudio";
+    desktopName = "RStudio Preview";
+    genericName = "IDE";
+    comment = meta.description;
+    categories = "Development;";
+    mimeType = "text/x-r-source;text/x-r;text/x-R;text/x-r-doc;text/x-r-sweave;text/x-r-markdown;text/x-r-html;text/x-r-presentation;application/x-r-data;application/x-r-project;text/x-r-history;text/x-r-profile;text/x-tex;text/x-markdown;text/html;text/css;text/javascript;text/x-chdr;text/x-csrc;text/x-c++hdr;text/x-c++src;";
+  };
+
+  postInstall = ''
+      wrapProgram $out/bin/rstudio --suffix PATH : ${gnumake}/bin
+      mkdir $out/share
+      cp -r ${desktopItem}/share/applications $out/share
+      mkdir $out/share/icons
+      ln $out/rstudio.png $out/share/icons
+  '';
+
+  meta = with stdenv.lib;
+    { description = "Set of integrated tools for the R language";
+      homepage = https://www.rstudio.com/;
+      license = licenses.agpl3;
+      maintainers = with maintainers; [ averelld ];
+      platforms = platforms.linux;
+    };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index d647840fc18d..9732e82ff222 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -18765,6 +18765,10 @@ with pkgs;
   rstudio = libsForQt5.callPackage ../applications/editors/rstudio {
     boost = boost166;
   };
+  rstudio-preview = libsForQt5.callPackage ../applications/editors/rstudio/preview.nix {
+    boost = boost166;
+    llvmPackages = llvmPackages_7;
+  };
 
   rsync = callPackage ../applications/networking/sync/rsync {
     enableACLs = !(stdenv.isDarwin || stdenv.isSunOS || stdenv.isFreeBSD);

From 4aa30166d160f2d8f27634b7b09d0bf236b8aa73 Mon Sep 17 00:00:00 2001
From: Robert Hensing <robert@roberthensing.nl>
Date: Sat, 3 Nov 2018 19:17:45 +0100
Subject: [PATCH 0430/1129] rabbitmq module: Update documentation after
 proofreading

Thanks @c0bw3b, @lsix!
---
 nixos/modules/services/amqp/rabbitmq.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/nixos/modules/services/amqp/rabbitmq.nix b/nixos/modules/services/amqp/rabbitmq.nix
index 43998296a18f..7373be2a9b0b 100644
--- a/nixos/modules/services/amqp/rabbitmq.nix
+++ b/nixos/modules/services/amqp/rabbitmq.nix
@@ -95,7 +95,7 @@ in {
 
           If you do need to express nested data structures, you can use
           <literal>config</literal> option. Configuration from <literal>config</literal>
-          will be merged into the these options by RabbitMQ at runtime to
+          will be merged into these options by RabbitMQ at runtime to
           form the final configuration.
 
           See http://www.rabbitmq.com/configure.html#config-items
@@ -110,7 +110,7 @@ in {
           Verbatim advanced configuration file contents using the Erlang syntax.
           This is also known as the <literal>advanced.config</literal> file or the old config format.
 
-          Where possible, the use <literal>configItems</literal> is preferred. However, nested
+          <literal>configItems</literal> is preferred whenever possible. However, nested
           data structures can only be expressed properly using the <literal>config</literal> option.
 
           The contents of this option will be merged into the <literal>configItems</literal>

From f25907413773c2455d1241b93eae8e06d538830e Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Sat, 3 Nov 2018 14:46:18 -0400
Subject: [PATCH 0431/1129] lollypop: 0.9.607 -> 0.9.610

---
 pkgs/applications/audio/lollypop/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/audio/lollypop/default.nix b/pkgs/applications/audio/lollypop/default.nix
index 034d2059283d..8df2be1a0391 100644
--- a/pkgs/applications/audio/lollypop/default.nix
+++ b/pkgs/applications/audio/lollypop/default.nix
@@ -4,7 +4,7 @@
 , gobjectIntrospection, wrapGAppsHook }:
 
 python3.pkgs.buildPythonApplication rec  {
-  version = "0.9.607";
+  version = "0.9.610";
   name = "lollypop-${version}";
 
   format = "other";
@@ -14,7 +14,7 @@ python3.pkgs.buildPythonApplication rec  {
     url = "https://gitlab.gnome.org/World/lollypop";
     rev = "refs/tags/${version}";
     fetchSubmodules = true;
-    sha256 = "04giwp4i7j1qad41fiqlb8s3w03f1ww0p2mhi8n162sajnflr1rd";
+    sha256 = "0nn4cjw0c2ysd3y2a7l08ybcd21v993wsz99f7w0881jhws3q5p4";
   };
 
   nativeBuildInputs = with python3.pkgs; [

From 5341e145c3b685500e9881c118d583dffaa65012 Mon Sep 17 00:00:00 2001
From: Robert Hensing <robert@roberthensing.nl>
Date: Sat, 3 Nov 2018 19:48:42 +0100
Subject: [PATCH 0432/1129] release-notes/19.03: nixpkgs.pkgs and
 nixpkgs.overlays now combine

---
 nixos/doc/manual/release-notes/rl-1903.xml | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/nixos/doc/manual/release-notes/rl-1903.xml b/nixos/doc/manual/release-notes/rl-1903.xml
index 839d75b53bd1..9a24fb940623 100644
--- a/nixos/doc/manual/release-notes/rl-1903.xml
+++ b/nixos/doc/manual/release-notes/rl-1903.xml
@@ -137,6 +137,14 @@
      make sure to update your configuration if you want to keep <literal>proglodyte-wasm</literal>
     </para>
    </listitem>
+   <listitem>
+    <para>
+     When the <literal>nixpkgs.pkgs</literal> option is set, NixOS will no
+     longer ignore the <literal>nixpkgs.overlays</literal> option. The old
+     behavior can be recovered by setting <literal>nixpkgs.overlays =
+     lib.mkForce [];</literal>.
+    </para>
+   </listitem>
   </itemizedlist>
  </section>
 

From ef16e1fe03113b4356aa795741039402cfefe04c Mon Sep 17 00:00:00 2001
From: Edmund Wu <fangkazuto@gmail.com>
Date: Thu, 25 Oct 2018 20:17:47 -0400
Subject: [PATCH 0433/1129] nvidia-x11: 410.66 -> 410.73

---
 pkgs/os-specific/linux/nvidia-x11/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/os-specific/linux/nvidia-x11/default.nix b/pkgs/os-specific/linux/nvidia-x11/default.nix
index 44598588db9d..97e5b3aa70ad 100644
--- a/pkgs/os-specific/linux/nvidia-x11/default.nix
+++ b/pkgs/os-specific/linux/nvidia-x11/default.nix
@@ -19,10 +19,10 @@ rec {
   stable = if stdenv.hostPlatform.system == "x86_64-linux" then stable_410 else stable_390;
 
   stable_410 = generic {
-    version = "410.66";
-    sha256_64bit = "05xjzvj0fgmkpz36dbd7hy2vzl6xxiflzx7kml3k7ad9gy2svdlg";
-    settingsSha256 = "1nsxz1byshgjs3c03lyx6ya36dp0f2vg2l0d9pkh1i6cpzkp53kz";
-    persistencedSha256 = "0m4wdpb8w4y323d8py105p9hizwmf2ai8frkl7h77sn3ski17zw6";
+    version = "410.73";
+    sha256_64bit = "07pzq8rvbsx3v8rgz98amyw0k1mn5mkygpd1q5gfn6r0h7vrrg5y";
+    settingsSha256 = "19xc10b0c074wb9fv9n04dvmi8hrwl6srvvyrjfyj92gch49x6hw";
+    persistencedSha256 = "0vhr7pysv4vk7v96yima0i9zsvvgxaxihjzxlfifpsdki57n2jz7";
   };
 
   # Last one supporting x86

From f0cee6b14f19dfe88aa502d123e11c0ba117b439 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Sat, 3 Nov 2018 14:03:34 -0500
Subject: [PATCH 0434/1129] grpc: only set -Wno-error on clang

Apparently GCC errors on this:

https://hydra.nixos.org/build/83561519/
---
 pkgs/development/libraries/grpc/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/libraries/grpc/default.nix b/pkgs/development/libraries/grpc/default.nix
index e568ea9eb650..f4145c85199b 100644
--- a/pkgs/development/libraries/grpc/default.nix
+++ b/pkgs/development/libraries/grpc/default.nix
@@ -26,7 +26,7 @@ stdenv.mkDerivation rec {
     rm -vf BUILD
   '';
 
-  NIX_CFLAGS_COMPILE = "-Wno-error=unknown-warning-option";
+  NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.cc.isClang "-Wno-error=unknown-warning-option";
 
   enableParallelBuilds = true;
 

From dfd0818aa5c3ef1d6686e8bf8677761740788cd9 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Sat, 3 Nov 2018 14:17:21 -0500
Subject: [PATCH 0435/1129] release-cross: use ghc844 for tests

This GHC version has much better support for cross compilation. It should hopefully fix our mingw breakages from #42407.

/cc @ericson2314
---
 pkgs/top-level/release-cross.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/top-level/release-cross.nix b/pkgs/top-level/release-cross.nix
index 6cf0cb57be4f..058182392e9b 100644
--- a/pkgs/top-level/release-cross.nix
+++ b/pkgs/top-level/release-cross.nix
@@ -30,7 +30,7 @@ let
     buildPackages.gcc = nativePlatforms;
     coreutils = nativePlatforms;
     haskell.packages.ghcHEAD.hello = nativePlatforms;
-    haskell.packages.ghc822.hello = nativePlatforms;
+    haskell.packages.ghc844.hello = nativePlatforms;
   };
 
   linuxCommon = lib.recursiveUpdate gnuCommon {

From ef4d78adedcfbb69392e7634bc6912c019b88bcc Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Sat, 3 Nov 2018 14:37:18 -0500
Subject: [PATCH 0436/1129] krb5: don't pull in keyutils with bionic

keyutils breaks with bionic. since it's an optional dependency, it seems safe to just disable it with libkrb5 (which otherwise works fine with bionic libc).
---
 pkgs/development/libraries/kerberos/krb5.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/libraries/kerberos/krb5.nix b/pkgs/development/libraries/kerberos/krb5.nix
index 4e3ba399cc3f..afb928aff6e9 100644
--- a/pkgs/development/libraries/kerberos/krb5.nix
+++ b/pkgs/development/libraries/kerberos/krb5.nix
@@ -40,7 +40,7 @@ stdenv.mkDerivation rec {
     # Provides the mig command used by the build scripts
     ++ optional stdenv.isDarwin bootstrap_cmds;
   buildInputs = [ openssl ]
-    ++ optionals (stdenv.hostPlatform.isLinux) [ keyutils ]
+    ++ optionals (stdenv.hostPlatform.isLinux && stdenv.hostPlatform.libc != "bionic") [ keyutils ]
     ++ optionals (!libOnly) [ openldap libedit ];
 
   preConfigure = "cd ./src";

From da1f78bd2bd0c7b7c3fc8c902c314c0c391cfaf1 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Sat, 3 Nov 2018 20:03:34 +0000
Subject: [PATCH 0437/1129] linux_beagleboard: remove

The package is out-of-date and has no maintainer.
It should be now possible to just mainline kernel.
Support for that could be added by copying the right dtb file in our linux_rpi kernel.
I do not have the hardware to test this.

cc @dezgeg @dhess
---
 .../linux/kernel/linux-beagleboard.nix        | 34 -------------------
 pkgs/top-level/all-packages.nix               |  9 -----
 2 files changed, 43 deletions(-)
 delete mode 100644 pkgs/os-specific/linux/kernel/linux-beagleboard.nix

diff --git a/pkgs/os-specific/linux/kernel/linux-beagleboard.nix b/pkgs/os-specific/linux/kernel/linux-beagleboard.nix
deleted file mode 100644
index e98104f11ca9..000000000000
--- a/pkgs/os-specific/linux/kernel/linux-beagleboard.nix
+++ /dev/null
@@ -1,34 +0,0 @@
-{ stdenv, buildPackages, fetchFromGitHub, perl, buildLinux, ubootTools, dtc, ... } @ args:
-
-let
-  modDirVersion = "4.14.12";
-  tag = "r23";
-in
-stdenv.lib.overrideDerivation (buildLinux (args // rec {
-  version = "${modDirVersion}-ti-${tag}";
-  inherit modDirVersion;
-
-  src = fetchFromGitHub {
-    owner = "beagleboard";
-    repo = "linux";
-    rev = "${version}";
-    sha256 = "07hdv2h12gsgafxsqqr7b0fir10rv9k66riklpjba2cg6x0p2nr4";
-  };
-
-  kernelPatches = args.kernelPatches;
-
-  features = {
-    efiBootStub = false;
-  } // (args.features or {});
-
-  extraMeta.hydraPlatforms = [ "armv7l-linux" ];
-} // (args.argsOverride or {}))) (oldAttrs: {
-
-  # This kernel will run mkuboot.sh.
-  postPatch = ''
-    patchShebangs scripts/
-  '';
-
-  nativeBuildInputs = oldAttrs.nativeBuildInputs ++ [ dtc ubootTools ];
-
-})
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 38f3264838cf..0962ba73555c 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -14213,14 +14213,6 @@ with pkgs;
 
   klibcShrunk = lowPrio (callPackage ../os-specific/linux/klibc/shrunk.nix { });
 
-  linux_beagleboard = callPackage ../os-specific/linux/kernel/linux-beagleboard.nix {
-    kernelPatches =
-      [ kernelPatches.bridge_stp_helper
-        kernelPatches.cpu-cgroup-v2."4.11"
-        kernelPatches.modinst_arg_list_too_long
-      ];
-  };
-
   linux_mptcp = linux_mptcp_94;
   linux_mptcp_94 = callPackage ../os-specific/linux/kernel/linux-mptcp.nix {
     kernelPatches =
@@ -14511,7 +14503,6 @@ with pkgs;
   linux_latest = linuxPackages_latest.kernel;
 
   # Build the kernel modules for the some of the kernels.
-  linuxPackages_beagleboard = linuxPackagesFor pkgs.linux_beagleboard;
   linuxPackages_mptcp = linuxPackagesFor pkgs.linux_mptcp;
   linuxPackages_rpi = linuxPackagesFor pkgs.linux_rpi;
   linuxPackages_4_4 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_4_4);

From e84291bd23dc2d9936ad9199a9e744e1b25be601 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Sat, 3 Nov 2018 20:57:58 +0000
Subject: [PATCH 0438/1129] linux-samus: remove

The package is out-of-date and has no maintainer.
I don't own a chromebook device and therefore don't know
if an mainline kernel could be used instead.
cc @lheckemann @zohl
---
 .../linux/kernel/linux-samus-4.12.nix            | 16 ----------------
 pkgs/top-level/all-packages.nix                  | 16 ----------------
 2 files changed, 32 deletions(-)
 delete mode 100644 pkgs/os-specific/linux/kernel/linux-samus-4.12.nix

diff --git a/pkgs/os-specific/linux/kernel/linux-samus-4.12.nix b/pkgs/os-specific/linux/kernel/linux-samus-4.12.nix
deleted file mode 100644
index 0a936c6c053b..000000000000
--- a/pkgs/os-specific/linux/kernel/linux-samus-4.12.nix
+++ /dev/null
@@ -1,16 +0,0 @@
-{ stdenv, buildPackages, fetchFromGitHub, perl, buildLinux, ncurses, ... } @ args:
-
-buildLinux (args // rec {
-  version = "4.12.2";
-  extraMeta.branch = "4.12-2";
-
-  src =
-    let upstream = fetchFromGitHub {
-      owner = "raphael";
-      repo = "linux-samus";
-      rev = "v${extraMeta.branch}";
-      sha256 = "1dr74i79p8r13522w2ppi8gnjd9bhngc9d2hsn91ji6f5a8fbxx9";
-    }; in "${upstream}/build/linux";
-
-  extraMeta.platforms = [ "x86_64-linux" ];
-} // (args.argsOverride or {}))
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 38f3264838cf..b954e0474cdc 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -14332,17 +14332,6 @@ with pkgs;
     ];
   };
 
-  linux_samus_4_12 = callPackage ../os-specific/linux/kernel/linux-samus-4.12.nix {
-    kernelPatches =
-      [ kernelPatches.bridge_stp_helper
-        kernelPatches.p9_fixes
-        # See pkgs/os-specific/linux/kernel/cpu-cgroup-v2-patches/README.md
-        # when adding a new linux version
-        kernelPatches.cpu-cgroup-v2."4.11"
-        kernelPatches.modinst_arg_list_too_long
-      ];
-  };
-
   linux_hardkernel_4_14 = callPackage ../os-specific/linux/kernel/linux-hardkernel-4.14.nix {
     kernelPatches = [
       kernelPatches.bridge_stp_helper
@@ -14571,11 +14560,6 @@ with pkgs;
 
   linuxPackages_latest_xen_dom0_hardened = recurseIntoAttrs (hardenedLinuxPackagesFor (pkgs.linux_latest.override { features.xen_dom0=true; }));
 
-  # Samus kernels
-  linuxPackages_samus_4_12 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_samus_4_12);
-  linuxPackages_samus_latest = linuxPackages_samus_4_12;
-  linux_samus_latest = linuxPackages_samus_latest.kernel;
-
   # Hardkernel (Odroid) kernels.
   linuxPackages_hardkernel_4_14 = recurseIntoAttrs (linuxPackagesFor pkgs.linux_hardkernel_4_14);
   linuxPackages_hardkernel_latest = linuxPackages_hardkernel_4_14;

From eadb9985819327f6bce7da87730d32e5018ee848 Mon Sep 17 00:00:00 2001
From: Robin Gloster <mail@glob.in>
Date: Sun, 4 Nov 2018 00:14:52 +0100
Subject: [PATCH 0439/1129] gitlab module: fix config handling

---
 nixos/modules/services/misc/gitlab.nix | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/nixos/modules/services/misc/gitlab.nix b/nixos/modules/services/misc/gitlab.nix
index ce1cb6ad37f2..aa72cda70453 100644
--- a/nixos/modules/services/misc/gitlab.nix
+++ b/nixos/modules/services/misc/gitlab.nix
@@ -552,10 +552,9 @@ in {
         gnupg
       ];
       preStart = ''
-        ${pkgs.openssl}/bin/openssl rand -hex 32 > ${cfg.statePath}/config/gitlab_shell_secret
-
         cp -rf ${cfg.packages.gitlab}/share/gitlab/db/* ${cfg.statePath}/db
-        cp -rf ${cfg.packages.gitlab}/share/gitlab/config.dist/* ${cfg.statePath}/config
+        rm -rf ${cfg.statePath}/config
+        mkdir ${cfg.statePath}/config
         if [ -e ${cfg.statePath}/lib ]; then
           rm ${cfg.statePath}/lib
         fi
@@ -569,6 +568,8 @@ in {
           ln -sf ${smtpSettings} ${cfg.statePath}/config/initializers/smtp_settings.rb
         ''}
         cp ${cfg.packages.gitlab}/share/gitlab/VERSION ${cfg.statePath}/VERSION
+        cp -rf ${cfg.packages.gitlab}/share/gitlab/config.dist/* ${cfg.statePath}/config
+        ${pkgs.openssl}/bin/openssl rand -hex 32 > ${cfg.statePath}/config/gitlab_shell_secret
 
         # JSON is a subset of YAML
         ln -sf ${pkgs.writeText "gitlab.yml" (builtins.toJSON gitlabConfig)} ${cfg.statePath}/config/gitlab.yml

From 2900f824e92f711510e0ae6858865c8af803001a Mon Sep 17 00:00:00 2001
From: Konstantin Nikiforov <nikiforov.ks@gmail.com>
Date: Sun, 4 Nov 2018 03:36:10 +0300
Subject: [PATCH 0440/1129] plex: 1.13.8.5395 ->  1.13.9.5456

---
 pkgs/servers/plex/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/servers/plex/default.nix b/pkgs/servers/plex/default.nix
index b562df681a06..4e783f3a507e 100644
--- a/pkgs/servers/plex/default.nix
+++ b/pkgs/servers/plex/default.nix
@@ -6,9 +6,9 @@
 let
   plexPass = throw "Plex pass has been removed at upstream's request; please unset nixpkgs.config.plex.pass";
   plexpkg = if enablePlexPass then plexPass else {
-    version = "1.13.8.5395";
-    vsnHash = "10d48da0d";
-    sha256 = "0lpsh87kcrqwi2qqkj1ccb86hif535yb45hhc41c0ixsfxbqk5cw";
+    version = "1.13.9.5456";
+    vsnHash = "ecd600442";
+    sha256 = "6d1125d4e6eaa94a84f8c600230b867c2d0764644adbc959a96433b8fc210b61";
   };
 
 in stdenv.mkDerivation rec {

From b5be88c97a1cd51f0f08f52200638700840cb337 Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Sat, 3 Nov 2018 19:44:24 -0500
Subject: [PATCH 0441/1129] pg_hll: 2.10.2-9af41684 -> 2.12

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 pkgs/servers/sql/postgresql/pg_hll/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/servers/sql/postgresql/pg_hll/default.nix b/pkgs/servers/sql/postgresql/pg_hll/default.nix
index 6c453f6a40c3..f91a8b1bf252 100644
--- a/pkgs/servers/sql/postgresql/pg_hll/default.nix
+++ b/pkgs/servers/sql/postgresql/pg_hll/default.nix
@@ -2,15 +2,15 @@
 
 stdenv.mkDerivation rec {
   name = "pg_hll-${version}";
-  version = "2.10.2-${builtins.substring 0 7 src.rev}";
+  version = "2.12";
 
   buildInputs = [ postgresql ];
 
   src = fetchFromGitHub {
     owner  = "citusdata";
     repo   = "postgresql-hll";
-    rev    = "9af41684d479a3097bab87d04936702c9e6baf5c";
-    sha256 = "044x9v9kjhxb0idqb9f5i7c3yygxxsqliswl4kspqy9f9qcblckl";
+    rev    = "refs/tags/v${version}";
+    sha256 = "1jdc9gjqc3dkjxv855q1p594j0awhrrymrcqnl5vw5vx2ny3bpgn";
   };
 
   installPhase = ''

From cecee87f396c9fca6c47a8bd91e176c8550ea3ab Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Sat, 3 Nov 2018 19:46:05 -0500
Subject: [PATCH 0442/1129] pg_repack: reindent to 2-spaces

More or less all the Postgres code uses this, so it's nice to be
consistent.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 .../sql/postgresql/pg_repack/default.nix      | 54 +++++++++----------
 1 file changed, 27 insertions(+), 27 deletions(-)

diff --git a/pkgs/servers/sql/postgresql/pg_repack/default.nix b/pkgs/servers/sql/postgresql/pg_repack/default.nix
index a50605bd0409..14f71b1e2b3b 100644
--- a/pkgs/servers/sql/postgresql/pg_repack/default.nix
+++ b/pkgs/servers/sql/postgresql/pg_repack/default.nix
@@ -1,35 +1,35 @@
 { stdenv, fetchFromGitHub, postgresql, openssl, zlib, readline }:
 
 stdenv.mkDerivation rec {
-    name = "pg_repack-${version}";
-    version = "1.4.4";
+  name = "pg_repack-${version}";
+  version = "1.4.4";
 
-    buildInputs = [ postgresql openssl zlib readline ];
+  buildInputs = [ postgresql openssl zlib readline ];
 
-    src = fetchFromGitHub {
-      owner  = "reorg";
-      repo   = "pg_repack";
-      rev    = "refs/tags/ver_${version}";
-      sha256 = "0ynsmsxfkcp82ccpz2nrgg8wiil8yxqigvw6425lx8v80h5lszbw";
-    };
+  src = fetchFromGitHub {
+    owner  = "reorg";
+    repo   = "pg_repack";
+    rev    = "refs/tags/ver_${version}";
+    sha256 = "0ynsmsxfkcp82ccpz2nrgg8wiil8yxqigvw6425lx8v80h5lszbw";
+  };
 
-    installPhase = ''
-      install -D bin/pg_repack -t $out/bin/
-      install -D lib/pg_repack.so -t $out/lib/
-      install -D lib/{pg_repack--${version}.sql,pg_repack.control} -t $out/share/extension
+  installPhase = ''
+    install -D bin/pg_repack -t $out/bin/
+    install -D lib/pg_repack.so -t $out/lib/
+    install -D lib/{pg_repack--${version}.sql,pg_repack.control} -t $out/share/extension
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Reorganize tables in PostgreSQL databases with minimal locks";
+    longDescription = ''
+      pg_repack is a PostgreSQL extension which lets you remove bloat from tables and indexes, and optionally restore
+      the physical order of clustered indexes. Unlike CLUSTER and VACUUM FULL it works online, without holding an
+      exclusive lock on the processed tables during processing. pg_repack is efficient to boot,
+      with performance comparable to using CLUSTER directly.
     '';
-
-    meta = with stdenv.lib; {
-      description = "Reorganize tables in PostgreSQL databases with minimal locks";
-      longDescription = ''
-        pg_repack is a PostgreSQL extension which lets you remove bloat from tables and indexes, and optionally restore
-        the physical order of clustered indexes. Unlike CLUSTER and VACUUM FULL it works online, without holding an
-        exclusive lock on the processed tables during processing. pg_repack is efficient to boot,
-        with performance comparable to using CLUSTER directly.
-      '';
-      license = licenses.bsd3;
-      maintainers = with maintainers; [ danbst ];
-      inherit (postgresql.meta) platforms;
-      inherit (src.meta) homepage;
-    };
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ danbst ];
+    inherit (postgresql.meta) platforms;
+    inherit (src.meta) homepage;
+  };
 }

From a713251348ac4059a7c2da7ffabdbf2772d90fad Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Sat, 3 Nov 2018 19:49:00 -0500
Subject: [PATCH 0443/1129] timescaledb: 0.11.0 -> 1.0.0

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 pkgs/servers/sql/postgresql/timescaledb/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/servers/sql/postgresql/timescaledb/default.nix b/pkgs/servers/sql/postgresql/timescaledb/default.nix
index fab515035ce6..07dcfb0b7018 100644
--- a/pkgs/servers/sql/postgresql/timescaledb/default.nix
+++ b/pkgs/servers/sql/postgresql/timescaledb/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, cmake, postgresql }:
+{ stdenv, fetchFromGitHub, cmake, postgresql, openssl }:
 
 # # To enable on NixOS:
 # config.services.postgresql = {
@@ -8,16 +8,16 @@
 
 stdenv.mkDerivation rec {
   name = "timescaledb-${version}";
-  version = "0.11.0";
+  version = "1.0.0";
 
   nativeBuildInputs = [ cmake ];
-  buildInputs = [ postgresql ];
+  buildInputs = [ postgresql openssl ];
 
   src = fetchFromGitHub {
     owner  = "timescale";
     repo   = "timescaledb";
     rev    = "refs/tags/${version}";
-    sha256 = "06xysf45r0c2sjfl6vgdbrm7pn7nxx2n0k29bm88q0ipyyp9fr0v";
+    sha256 = "1359jc0dw8q3f0iipqfadzs8lvri9qa5w59ziz00x1d09ppw2q40";
   };
 
   # Fix the install phase which tries to install into the pgsql extension dir,

From d8abcdc1de4b918740b34e1862270118a401f13a Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Sat, 3 Nov 2018 19:50:32 -0500
Subject: [PATCH 0444/1129] pg_topn: 2.0.2 -> 2.2.0

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 pkgs/servers/sql/postgresql/topn/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/sql/postgresql/topn/default.nix b/pkgs/servers/sql/postgresql/topn/default.nix
index 6886c80cf50d..dae30aadabd0 100644
--- a/pkgs/servers/sql/postgresql/topn/default.nix
+++ b/pkgs/servers/sql/postgresql/topn/default.nix
@@ -2,7 +2,7 @@
 
 stdenv.mkDerivation rec {
   name = "pg_topn-${version}";
-  version = "2.0.2";
+  version = "2.2.0";
 
   nativeBuildInputs = [ protobufc ];
   buildInputs = [ postgresql ];
@@ -11,7 +11,7 @@ stdenv.mkDerivation rec {
     owner  = "citusdata";
     repo   = "postgresql-topn";
     rev    = "refs/tags/v${version}";
-    sha256 = "00hc3hgnqv9xaalizbcvprb7s55sydj2qgk3rhgrdlwg2g025h62";
+    sha256 = "1i5fn517mdvzfhlcj7fh4z0iniynanshcn7kzhsq19sgci0g31fr";
   };
 
   installPhase = ''

From 800184df21cfe4924e1e901f387cda49a9a8269c Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Sat, 3 Nov 2018 19:52:55 -0500
Subject: [PATCH 0445/1129] tsearch_extras: 0.3 -> 0.4

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 pkgs/servers/sql/postgresql/tsearch_extras/default.nix | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/pkgs/servers/sql/postgresql/tsearch_extras/default.nix b/pkgs/servers/sql/postgresql/tsearch_extras/default.nix
index 5140ae1a228f..b43a9c51be0c 100644
--- a/pkgs/servers/sql/postgresql/tsearch_extras/default.nix
+++ b/pkgs/servers/sql/postgresql/tsearch_extras/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "tsearch-extras-${version}";
-  version = "0.3";
+  version = "0.4";
 
   src = fetchFromGitHub {
-    owner = "zulip";
-    repo = "tsearch_extras";
-    rev = version;
-    sha256 = "0i3i99lw80jwd4xflgdqabxmn1dnm1gm7dzf1mqv2drllxcy3yix";
+    owner  = "zulip";
+    repo   = "tsearch_extras";
+    rev    = "84e78f00931c4ef261d98197d6b5d94fc141f742"; # no release tag?
+    sha256 = "18j0saqblg3jhrz38splk173xjwdf32c67ymm18m8n5y94h8d2ba";
   };
 
   nativenativeBuildInputs = [ pkgconfig ];

From b81a37549eb9cd7080344f63832b3bd902907b75 Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Sat, 3 Nov 2018 20:32:19 -0500
Subject: [PATCH 0446/1129] ibm-plex: 1.1.6 -> 1.2.1

---
 pkgs/data/fonts/ibm-plex/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/data/fonts/ibm-plex/default.nix b/pkgs/data/fonts/ibm-plex/default.nix
index ba214dd35fd0..e5a281eebf6e 100644
--- a/pkgs/data/fonts/ibm-plex/default.nix
+++ b/pkgs/data/fonts/ibm-plex/default.nix
@@ -1,7 +1,7 @@
 { lib, fetchzip }:
 
 let
-  version = "1.1.6";
+  version = "1.2.1";
 in fetchzip rec {
   name = "ibm-plex-${version}";
   url = "https://github.com/IBM/plex/releases/download/v${version}/OpenType.zip";
@@ -9,7 +9,7 @@ in fetchzip rec {
     mkdir -p $out/share/fonts
     unzip -j $downloadedFile \*.otf -d $out/share/fonts/opentype
   '';
-  sha256 = "0n9qmh6v7gvrl1mfb0knygxlbkb78hvkdrppssx64m3pk4pxw85a";
+  sha256 = "1mwlw39nbqrk08crvgm77l98yyyabwhcgsng89c9s67gq4mlxmxa";
 
   meta = with lib; {
     description = "IBM Plex Typeface";

From b065bb213335cb0228b2831c3d743f8e7f60ea39 Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Sat, 3 Nov 2018 20:36:22 -0500
Subject: [PATCH 0447/1129] 1password: 0.5.3 -> 0.5.4

---
 pkgs/applications/misc/1password/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/misc/1password/default.nix b/pkgs/applications/misc/1password/default.nix
index 331f516c88ce..a25d40e29bd0 100644
--- a/pkgs/applications/misc/1password/default.nix
+++ b/pkgs/applications/misc/1password/default.nix
@@ -2,24 +2,24 @@
 
 stdenv.mkDerivation rec {
   name = "1password-${version}";
-  version = "0.5.3";
+  version = "0.5.4";
   src =
     if stdenv.hostPlatform.system == "i686-linux" then
       fetchzip {
         url = "https://cache.agilebits.com/dist/1P/op/pkg/v${version}/op_linux_386_v${version}.zip";
-        sha256 = "05s223h1yps4k9kmignl0r5sbh6w7m1hnlmafnf1kiwv7gacvxjc";
+        sha256 = "0wni2hk5b1qfr24vi24jiprpi08k3qgaw9lqp61k41a1sjp3izv0";
         stripRoot = false;
       }
     else if stdenv.hostPlatform.system == "x86_64-linux" then
       fetchzip {
         url = "https://cache.agilebits.com/dist/1P/op/pkg/v${version}/op_linux_amd64_v${version}.zip";
-        sha256 = "0p9x1fx0309v8dxxaf88m8x8q15zzqywfmjn6v5wb9v3scp9396v";
+        sha256 = "169d5fl3cfw3xrlpm9nlmwbnp0xgh0la9qybzf8ragp0020nlyih";
         stripRoot = false;
       }
     else if stdenv.hostPlatform.system == "x86_64-darwin" then
       fetchzip {
         url = "https://cache.agilebits.com/dist/1P/op/pkg/v${version}/op_darwin_amd64_v${version}.zip";
-        sha256 = "1z2xp9bn93gr4ha6zx65va1fb58a2xlnnmpv583y96gq3vbnqdcj";
+        sha256 = "1scikv7v33kzg9rqsrz97yklxaskvif84br13zg8annm43k5vlma";
         stripRoot = false;
       }
     else throw "Architecture not supported";

From ccb76eeb3c607704726deb81eacf26b2ec920c6d Mon Sep 17 00:00:00 2001
From: Piotr Bogdan <ppbogdan@gmail.com>
Date: Sun, 4 Nov 2018 03:43:22 +0000
Subject: [PATCH 0448/1129] chrootenv: strip the binary

---
 pkgs/build-support/build-fhs-userenv/chrootenv/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/build-support/build-fhs-userenv/chrootenv/default.nix b/pkgs/build-support/build-fhs-userenv/chrootenv/default.nix
index 375c30e1e463..4ab8c248e2fa 100644
--- a/pkgs/build-support/build-fhs-userenv/chrootenv/default.nix
+++ b/pkgs/build-support/build-fhs-userenv/chrootenv/default.nix
@@ -8,6 +8,7 @@ stdenv.mkDerivation {
 
   buildCommand = ''
     cc ${./chrootenv.c} $(pkg-config --cflags --libs glib-2.0) -o $out
+    ${stdenv.cc.bintools.bintools}/bin/strip $out
   '';
 
   meta = with stdenv.lib; {

From e7be7eb7dce25184a2d8631718324f66c60e4f67 Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Sat, 3 Nov 2018 23:46:31 -0500
Subject: [PATCH 0449/1129] jdupes: 1.10.4 -> 1.11

---
 pkgs/tools/misc/jdupes/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/misc/jdupes/default.nix b/pkgs/tools/misc/jdupes/default.nix
index 991066690ee4..0df351bdd560 100644
--- a/pkgs/tools/misc/jdupes/default.nix
+++ b/pkgs/tools/misc/jdupes/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "jdupes-${version}";
-  version = "1.10.4";
+  version = "1.11";
 
   src = fetchFromGitHub {
     owner = "jbruchon";
     repo  = "jdupes";
     rev   = "v${version}";
-    sha256 = "03a2jxv634xy5qwjrk784k3y3pd8f94pndf5m84yg2y7i8dvppnk";
+    sha256 = "124n9vgnqqhnwgnms7dqmndp25xrcjaykxrzbi4v4as98kxxi3j1";
     # Unicode file names lead to different checksums on HFS+ vs. other
     # filesystems because of unicode normalisation. The testdir
     # directories have such files and will be removed.

From 08ac10397079217ce6118586822e7f42686ed6b9 Mon Sep 17 00:00:00 2001
From: Vincent Laporte <Vincent.Laporte@gmail.com>
Date: Sun, 4 Nov 2018 06:29:27 +0000
Subject: [PATCH 0450/1129] acgtk: 1.3.1 -> 1.5.0

---
 .../science/logic/acgtk/default.nix           | 50 ++++---------------
 .../acgtk/install-emacs-to-site-lisp.patch    | 23 ---------
 .../logic/acgtk/use-nix-ocaml-byteflags.patch | 11 ----
 pkgs/top-level/all-packages.nix               |  4 +-
 4 files changed, 11 insertions(+), 77 deletions(-)
 delete mode 100644 pkgs/applications/science/logic/acgtk/install-emacs-to-site-lisp.patch
 delete mode 100644 pkgs/applications/science/logic/acgtk/use-nix-ocaml-byteflags.patch

diff --git a/pkgs/applications/science/logic/acgtk/default.nix b/pkgs/applications/science/logic/acgtk/default.nix
index b787a4e7a01c..729aef4e21c2 100644
--- a/pkgs/applications/science/logic/acgtk/default.nix
+++ b/pkgs/applications/science/logic/acgtk/default.nix
@@ -1,57 +1,27 @@
-{ stdenv, fetchurl, ocamlPackages,
-  buildBytecode ? true,
-  buildNative ? true,
-  installExamples ? true,
-  installEmacsMode ? true }:
-
-let inherit (stdenv.lib) versionAtLeast optionalString; in
-
-let inherit (ocamlPackages) ocaml camlp4; in
-
-assert buildBytecode || buildNative;
+{ stdenv, fetchurl, dune, ocamlPackages }:
 
 stdenv.mkDerivation {
 
-  name = "acgtk-1.3.1";
+  name = "acgtk-1.5.0";
 
   src = fetchurl {
-    url = http://calligramme.loria.fr/acg/software/acg-1.3.1-20170303.tar.gz;
-    sha256 = "1hhrf6bx2x2wbv5ldn4fnxhpr9lyrj3zh1vcnx8wf8f06ih4rzfq";
+    url = http://calligramme.loria.fr/acg/software/acg-1.5.0-20181019.tar.gz;
+    sha256 = "14n003gxzw5w79hlpw1ja4nq97jqf9zqyg00ihvpxw4bv9jlm8jm";
   };
 
-  buildInputs = with ocamlPackages; [
-    ocaml findlib camlp4 ansiterminal biniou bolt cairo2 dypgen easy-format ocf yojson
-  ];
+  buildInputs = [ dune ] ++ (with ocamlPackages; [
+    ocaml findlib ansiterminal cairo2 fmt logs menhir mtime ocf
+  ]);
 
-  patches = [ ./install-emacs-to-site-lisp.patch
-              ./use-nix-ocaml-byteflags.patch ];
+  buildPhase = "dune build";
 
-  postPatch = optionalString (camlp4 != null) ''
-    substituteInPlace src/Makefile.master.in \
-      --replace "+camlp4" "${camlp4}/lib/ocaml/${ocaml.version}/site-lib/camlp4/"
-  '' + optionalString (versionAtLeast (stdenv.lib.getVersion ocamlPackages.yojson) "1.4") ''
-    substituteInPlace src/scripting/Makefile.in --replace yojson.cmo yojson.cma
-  '';
-
-  # The bytecode executable is dependent on the dynamic library provided by
-  # ANSITerminal. We can use the -dllpath flag of ocamlc (analogous to
-  # -rpath) to make sure that ocamlrun is able to link the library at
-  # runtime and that Nix detects a runtime dependency.
-  NIX_OCAML_BYTEFLAGS = "-dllpath ${ocamlPackages.ansiterminal}/lib/ocaml/${ocaml.version}/site-lib/ANSITerminal";
-
-  buildFlags = optionalString buildBytecode "byte"
-             + " "
-             + optionalString buildNative "opt";
-
-  installTargets = "install"
-                 + " " + optionalString installExamples "install-examples"
-                 + " " + optionalString installEmacsMode "install-emacs";
+  inherit (dune) installPhase;
 
   meta = with stdenv.lib; {
     homepage = http://calligramme.loria.fr/acg/;
     description = "A toolkit for developing ACG signatures and lexicon";
     license = licenses.cecill20;
-    platforms = ocaml.meta.platforms or [];
+    inherit (ocamlPackages.ocaml.meta) platforms;
     maintainers = [ maintainers.jirkamarsik ];
   };
 }
diff --git a/pkgs/applications/science/logic/acgtk/install-emacs-to-site-lisp.patch b/pkgs/applications/science/logic/acgtk/install-emacs-to-site-lisp.patch
deleted file mode 100644
index 43ddd20b4a39..000000000000
--- a/pkgs/applications/science/logic/acgtk/install-emacs-to-site-lisp.patch
+++ /dev/null
@@ -1,23 +0,0 @@
---- acg-1.1-20140905/Makefile.in	2014-10-24 15:21:39.442287208 +0200
-+++ acg-1.1-20140905/Makefile.in.new	2014-10-24 15:24:58.557117228 +0200
-@@ -35,6 +35,7 @@
- ACGC_DIR=src/acg-data
- 
- DATA_DIR=@datarootdir@/acgtk
-+EMACS_DIR=@prefix@/share/emacs/site-lisp
- 
- 
- 
-@@ -82,10 +83,10 @@
- 	rm -r $(DATA_DIR)
- 
- install-emacs:
--	mkdir -p $(DATA_DIR) && cp -r emacs $(DATA_DIR)/.
-+	mkdir -p $(EMACS_DIR) && cp emacs/acg.el $(EMACS_DIR)
- 
- uninstall-emacs:
--	rm -rf $(DATA_DIR)/emacs
-+	rm -rf $(EMACS_DIR)/emacs
- 
- install-examples:
- 	mkdir -p $(DATA_DIR) && cp -r examples $(DATA_DIR)/.
diff --git a/pkgs/applications/science/logic/acgtk/use-nix-ocaml-byteflags.patch b/pkgs/applications/science/logic/acgtk/use-nix-ocaml-byteflags.patch
deleted file mode 100644
index 26ade37e4521..000000000000
--- a/pkgs/applications/science/logic/acgtk/use-nix-ocaml-byteflags.patch
+++ /dev/null
@@ -1,11 +0,0 @@
---- acg-1.1-20140905/src/Makefile.master.in	2014-10-27 10:59:42.263382081 +0100
-+++ acg-1.1-20140905/src/Makefile.master.in.new	2014-10-27 10:59:59.683597972 +0100
-@@ -23,7 +23,7 @@
- # All warnings are treated as errors
- WARNINGS = @OCAML09WARNINGS@ -warn-error A
- COMMONFLAGS= $(WARNINGS) @TYPES@
--BYTEFLAGS = $(COMMONFLAGS) $(DEBUGFLAG)
-+BYTEFLAGS = $(COMMONFLAGS) $(DEBUGFLAG) $(NIX_OCAML_BYTEFLAGS)
- OPTFLAGS = $(COMMONFLAGS)
- LFLAGS= -a
- 
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 6bdb2be44800..23590919a0bd 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -21351,9 +21351,7 @@ with pkgs;
 
   abella = callPackage ../applications/science/logic/abella {};
 
-  acgtk = callPackage ../applications/science/logic/acgtk {
-    ocamlPackages = ocaml-ng.ocamlPackages_4_05;
-  };
+  acgtk = callPackage ../applications/science/logic/acgtk {};
 
   alt-ergo = callPackage ../applications/science/logic/alt-ergo {};
 

From dd21f83950471bcd1878268b525207df4445ad8d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Th=C3=A9o=20Zimmermann?=
 <theo.zimmermann@univ-paris-diderot.fr>
Date: Fri, 2 Nov 2018 10:09:15 +0100
Subject: [PATCH 0451/1129] coq_8_9: init at 8.9+beta1

---
 pkgs/applications/science/logic/coq/default.nix |  1 +
 pkgs/top-level/all-packages.nix                 | 13 +++++++------
 pkgs/top-level/coq-packages.nix                 | 10 +++++-----
 3 files changed, 13 insertions(+), 11 deletions(-)

diff --git a/pkgs/applications/science/logic/coq/default.nix b/pkgs/applications/science/logic/coq/default.nix
index 040d722f9410..5fab9788a94a 100644
--- a/pkgs/applications/science/logic/coq/default.nix
+++ b/pkgs/applications/science/logic/coq/default.nix
@@ -25,6 +25,7 @@ let
    "8.8.0" = "13a4fka22hdxsjk11mgjb9ffzplfxyxp1sg5v1c8nk1grxlscgw8";
    "8.8.1" = "1hlf58gwazywbmfa48219amid38vqdl94yz21i11b4map6jfwhbk";
    "8.8.2" = "1lip3xja924dm6qblisk1bk0x8ai24s5xxqxphbdxj6djglj68fd";
+   "8.9+beta1" = "1yxv2klqal3mh6symi3gc6gv3xm684zlld2c0b6ijhjmp865cin8";
   }."${version}";
   coq-version = builtins.substring 0 3 version;
   ideFlags = if buildIde then "-lablgtkdir ${ocamlPackages.lablgtk}/lib/ocaml/*/site-lib/lablgtk2 -coqide opt" else "";
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 6bdb2be44800..7fc0c9fee9df 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -21364,13 +21364,14 @@ with pkgs;
   boogie = dotnetPackages.Boogie;
 
   inherit (callPackage ./coq-packages.nix {
-    inherit (ocaml-ng) ocamlPackages_4_02
-                       ocamlPackages_4_05
-    ;
+    inherit (ocaml-ng) ocamlPackages_4_05;
   }) mkCoqPackages
-    coq_8_5 coq_8_6 coq_8_7 coq_8_8
-    coqPackages_8_5 coqPackages_8_6 coqPackages_8_7 coqPackages_8_8
-    coqPackages coq
+    coqPackages_8_5  coq_8_5
+    coqPackages_8_6  coq_8_6
+    coqPackages_8_7  coq_8_7
+    coqPackages_8_8  coq_8_8
+    coqPackages_8_9  coq_8_9
+    coqPackages      coq
   ;
 
   coq2html = callPackage ../applications/science/logic/coq2html {
diff --git a/pkgs/top-level/coq-packages.nix b/pkgs/top-level/coq-packages.nix
index a4f44b6fc6f7..3ba90f3b5943 100644
--- a/pkgs/top-level/coq-packages.nix
+++ b/pkgs/top-level/coq-packages.nix
@@ -1,8 +1,4 @@
-{ lib, callPackage, newScope, recurseIntoAttrs
-, gnumake3
-, ocamlPackages_4_02
-, ocamlPackages_4_05
-}:
+{ lib, callPackage, newScope, recurseIntoAttrs, ocamlPackages_4_05 }:
 
 let
   mkCoqPackages' = self: coq:
@@ -70,11 +66,15 @@ in rec {
   coq_8_8 = callPackage ../applications/science/logic/coq {
     version = "8.8.2";
   };
+  coq_8_9 = callPackage ../applications/science/logic/coq {
+    version = "8.9+beta1";
+  };
 
   coqPackages_8_5 = mkCoqPackages coq_8_5;
   coqPackages_8_6 = mkCoqPackages coq_8_6;
   coqPackages_8_7 = mkCoqPackages coq_8_7;
   coqPackages_8_8 = mkCoqPackages coq_8_8;
+  coqPackages_8_9 = mkCoqPackages coq_8_9;
   coqPackages = coqPackages_8_8;
   coq = coqPackages.coq;
 

From 6e052567047166460db229074e48d7e6c393957e Mon Sep 17 00:00:00 2001
From: davidak <git@davidak.de>
Date: Sun, 4 Nov 2018 04:03:57 +0100
Subject: [PATCH 0452/1129] radeon-crimson: fix download

---
 pkgs/os-specific/linux/ati-drivers/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/ati-drivers/default.nix b/pkgs/os-specific/linux/ati-drivers/default.nix
index d5d42faa913e..cda7e03cd066 100644
--- a/pkgs/os-specific/linux/ati-drivers/default.nix
+++ b/pkgs/os-specific/linux/ati-drivers/default.nix
@@ -61,8 +61,8 @@ stdenv.mkDerivation rec {
   src = fetchurl {
     url =
     "https://www2.ati.com/drivers/linux/radeon-crimson-15.12-15.302-151217a-297685e.zip";
-    sha256 = "0n0ynqmjkjp5dl5q07as7ps3rlyyn63hq4mlwgd7c7v82ky2skvh";
-    curlOpts = "--referer http://support.amd.com/en-us/download/desktop?os=Linux+x86_64";
+    sha256 = "704f2dfc14681f76dae3b4120c87b1ded33cf43d5a1d800b6de5ca292bb61e58";
+    curlOpts = "--referer https://www.amd.com/en/support";
   };
 
   hardeningDisable = [ "pic" "format" ];

From 71449e70e91c46020411f806dd242d0932f1b239 Mon Sep 17 00:00:00 2001
From: Uri Baghin <uri@canva.com>
Date: Sun, 4 Nov 2018 20:26:07 +1100
Subject: [PATCH 0453/1129] bazel-deps: 2018-08-16 -> 2018-11-01

---
 .../tools/build-managers/bazel/bazel-deps/default.nix    | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/pkgs/development/tools/build-managers/bazel/bazel-deps/default.nix b/pkgs/development/tools/build-managers/bazel/bazel-deps/default.nix
index af8cd5faacde..142f729517d5 100644
--- a/pkgs/development/tools/build-managers/bazel/bazel-deps/default.nix
+++ b/pkgs/development/tools/build-managers/bazel/bazel-deps/default.nix
@@ -2,7 +2,7 @@
 
 buildBazelPackage rec {
   name = "bazel-deps-${version}";
-  version = "2018-08-16";
+  version = "2018-11-01";
 
   meta = with stdenv.lib; {
     homepage = "https://github.com/johnynek/bazel-deps";
@@ -15,8 +15,8 @@ buildBazelPackage rec {
   src = fetchFromGitHub {
     owner = "johnynek";
     repo = "bazel-deps";
-    rev = "942a0b03cbf159dd6e0f0f40787d6d8e4e832d81";
-    sha256 = "0ls2jvz9cxa169a8pbbykv2d4dik4ipf7dj1lkqx5g0ss7lgs6q5";
+    rev = "1af8921d52f053fad575f26762533a3823b4a847";
+    sha256 = "0srz0sbz4bq9n7cp4g1n3kd3j6rcjqfi25sq8aa64l27yqzbk53x";
   };
 
   bazelTarget = "//src/scala/com/github/johnynek/bazel_deps:parseproject_deploy.jar";
@@ -66,12 +66,13 @@ buildBazelPackage rec {
       find . -type d -empty -delete
     '';
 
-    sha256 = "0jkzf1hay0h8ksk9lhfvdliac6c5d7nih934i1xjbrn6zqlivy19";
+    sha256 = "1gvl4a9z8p4ch2gmcj3lpp0imrkrvy8wng949p3wlkibi14hc6ww";
   };
 
   buildAttrs = {
     installPhase = ''
       mkdir -p $out/bin/bazel-bin/src/scala/com/github/johnynek/bazel_deps
+
       cp gen_maven_deps.sh $out/bin
       wrapProgram "$out/bin/gen_maven_deps.sh" --set JAVA_HOME "${jre}" --prefix PATH : ${lib.makeBinPath [ jre ]}
       cp bazel-bin/src/scala/com/github/johnynek/bazel_deps/parseproject_deploy.jar $out/bin/bazel-bin/src/scala/com/github/johnynek/bazel_deps

From abea6f461ae886544917e32634e5612b0fc73c13 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sun, 4 Nov 2018 11:01:09 +0100
Subject: [PATCH 0454/1129] Revert "Merge pull request #49398 from
 Synthetica9/implement-rfc0035" to fix eval

This reverts commit 3fc7d5eb83804e10ae55b1ae9b102f88b1ea2b08, reversing
changes made to 1fddf2b68996b56804a24b67191e4d883943057d.

The idea is good, however, before enforcing, make sure all occurences
are fixed.
---
 pkgs/stdenv/generic/make-derivation.nix | 13 +------------
 1 file changed, 1 insertion(+), 12 deletions(-)

diff --git a/pkgs/stdenv/generic/make-derivation.nix b/pkgs/stdenv/generic/make-derivation.nix
index cb3731da1934..e06faed30a1e 100644
--- a/pkgs/stdenv/generic/make-derivation.nix
+++ b/pkgs/stdenv/generic/make-derivation.nix
@@ -12,9 +12,7 @@ rec {
   # * https://nixos.org/nix/manual/#ssec-derivation
   #   Explanation about derivations in general
   mkDerivation =
-    { name ? if attrs ? pname && attrs ? version
-        then "${attrs.pname}-${attrs.version}"
-        else ""
+    { name ? ""
 
     # These types of dependencies are all exhaustively documented in
     # the "Specifying Dependencies" section of the "Standard
@@ -67,8 +65,6 @@ rec {
     , pos ? # position used in error messages and for meta.position
         (if attrs.meta.description or null != null
           then builtins.unsafeGetAttrPos "description" attrs.meta
-          else if attrs.version or null != null
-          then builtins.unsafeGetAttrPos "version" attrs
           else builtins.unsafeGetAttrPos "name" attrs)
     , separateDebugInfo ? false
     , outputs ? [ "out" ]
@@ -82,13 +78,6 @@ rec {
 
     , ... } @ attrs:
 
-    # Check that the name is consistent with pname and version:
-    assert lib.assertMsg
-      (lib.lists.all (name: builtins.hasAttr name attrs) ["name" "pname" "version"]
-        -> lib.strings.hasSuffix "${attrs.pname}-${attrs.version}" attrs.name)
-      ("mkDerivation: `name` (\"${attrs.name}\") must be consistent " +
-       "with `pname-version` \"${attrs.pname}-${attrs.version}\"");
-
     let
       # TODO(@oxij, @Ericson2314): This is here to keep the old semantics, remove when
       # no package has `doCheck = true`.

From 058a3c0806e2148ae3d0519bcaa929b7c2486c17 Mon Sep 17 00:00:00 2001
From: Timon Stampfli <timon@timon.ch>
Date: Sat, 27 Oct 2018 15:25:52 +0200
Subject: [PATCH 0455/1129] openjpeg: adding patch for CVE-2018-7648

(cherry picked from commit 3dc0838450ad5ec8c25adcd1c7bfe3b8b630b7e5)
Forward-picking from staging-next.  The CVE is marked as critical,
and the amount of rebuilds isn't that high (~500 linux, ~100 darwin).
---
 pkgs/development/libraries/openjpeg/2.x.nix | 8 ++++++++
 1 file changed, 8 insertions(+)

diff --git a/pkgs/development/libraries/openjpeg/2.x.nix b/pkgs/development/libraries/openjpeg/2.x.nix
index d18c971dc112..77d9e5829a1a 100644
--- a/pkgs/development/libraries/openjpeg/2.x.nix
+++ b/pkgs/development/libraries/openjpeg/2.x.nix
@@ -5,4 +5,12 @@ callPackage ./generic.nix (args // rec {
   branch = "2.3";
   revision = "v${version}";
   sha256 = "08plxrnfl33sn2vh5nwbsngyv6b1sfpplvx881crm1v1ai10m2lz";
+
+  patches = [
+    (fetchpatch {
+      name = "CVE-2018-7648.patch";
+      url = "https://github.com/uclouvain/openjpeg/commit/cc3824767bde397fedb8a1ae4786a222ba860c8d.patch";
+      sha256 = "1j5nxmlgyfkxldk2f1ij6h850xw45q3b5brxqa04dxsfsv8cdj5j";
+    })
+  ];
 })

From 587c3774abc075f117eb73bf01ef4d582de03411 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Vladim=C3=ADr=20=C4=8Cun=C3=A1t?= <vcunat@gmail.com>
Date: Sat, 3 Nov 2018 15:07:45 +0100
Subject: [PATCH 0456/1129] Revert "systemd: 239 -> 239.20181031"

This reverts commit d1de23b8302d02d4699e884533906a3992f370b6.
The changes turned out to be too intrusive, so we'll patch instead.
Discussion: https://github.com/NixOS/systemd/pull/24
---
 pkgs/os-specific/linux/systemd/default.nix | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/pkgs/os-specific/linux/systemd/default.nix b/pkgs/os-specific/linux/systemd/default.nix
index 2a17a0a2875f..db64b8e6f6de 100644
--- a/pkgs/os-specific/linux/systemd/default.nix
+++ b/pkgs/os-specific/linux/systemd/default.nix
@@ -18,7 +18,7 @@ let
   pythonLxmlEnv = buildPackages.python3Packages.python.withPackages ( ps: with ps; [ python3Packages.lxml ]);
 
 in stdenv.mkDerivation rec {
-  version = "239.20181031";
+  version = "239";
   name = "systemd-${version}";
 
   # When updating, use https://github.com/systemd/systemd-stable tree, not the development one!
@@ -26,8 +26,8 @@ in stdenv.mkDerivation rec {
   src = fetchFromGitHub {
     owner = "NixOS";
     repo = "systemd";
-    rev = "nixos-v${version}";
-    sha256 = "1rzl0iqrpa4ajvama5k3cb3yc7893c55kzcxkl3cyavpdzsw5505";
+    rev = "31859ddd35fc3fa82a583744caa836d356c31d7f";
+    sha256 = "1xci0491j95vdjgs397n618zii3sgwnvanirkblqqw6bcvcjvir1";
   };
 
   outputs = [ "out" "lib" "man" "dev" ];
@@ -91,7 +91,6 @@ in stdenv.mkDerivation rec {
     "-Dsulogin-path=${utillinux}/bin/sulogin"
     "-Dmount-path=${utillinux}/bin/mount"
     "-Dumount-path=${utillinux}/bin/umount"
-    "-Ddns-over-tls=false"
   ];
 
   preConfigure = ''

From 179b8146e668636fe59ef7663a6c8cd15d00db7e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Vladim=C3=ADr=20=C4=8Cun=C3=A1t?= <vcunat@gmail.com>
Date: Sat, 3 Nov 2018 15:47:44 +0100
Subject: [PATCH 0457/1129] systemd: apply patches from Debian

There are some security fixes among those.
---
 pkgs/os-specific/linux/systemd/default.nix | 18 +++++++++++++++++-
 1 file changed, 17 insertions(+), 1 deletion(-)

diff --git a/pkgs/os-specific/linux/systemd/default.nix b/pkgs/os-specific/linux/systemd/default.nix
index db64b8e6f6de..1d45109ac852 100644
--- a/pkgs/os-specific/linux/systemd/default.nix
+++ b/pkgs/os-specific/linux/systemd/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, lib, fetchFromGitHub, fetchpatch, pkgconfig, intltool, gperf, libcap, kmod
+{ stdenv, lib, fetchFromGitHub, fetchpatch, fetchurl, pkgconfig, intltool, gperf, libcap, kmod
 , xz, pam, acl, libuuid, m4, utillinux, libffi
 , glib, kbd, libxslt, coreutils, libgcrypt, libgpgerror, libidn2, libapparmor
 , audit, lz4, bzip2, libmicrohttpd, pcre2
@@ -30,6 +30,22 @@ in stdenv.mkDerivation rec {
     sha256 = "1xci0491j95vdjgs397n618zii3sgwnvanirkblqqw6bcvcjvir1";
   };
 
+  prePatch = let
+      # Upstream's maintenance branches are still too intrusive:
+      # https://github.com/systemd/systemd-stable/tree/v239-stable
+      patches-deb = fetchurl {
+        # When the URL disappears, it typically means that Debian has new patches
+        # (probably security) and updating to new tarball will apply them as well.
+        name = "systemd-debian-patches.tar.xz";
+        url = mirror://debian/pool/main/s/systemd/systemd_239-11~bpo9+1.debian.tar.xz;
+        sha256 = "136f6p4jbi4z94mf4g099dfcacwka8jwhza0wxxw2q5l5q3xiysh";
+      };
+      # Note that we skip debian-specific patches, i.e. ./debian/patches/debian/*
+    in ''
+      tar xf ${patches-deb}
+      patches="$patches $(cat debian/patches/series | grep -v '^debian/' | sed 's|^|debian/patches/|')"
+    '';
+
   outputs = [ "out" "lib" "man" "dev" ];
 
   nativeBuildInputs =

From c3cddfcef143e33ed05b742cd7dfe7e09b81a3f6 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Niklas=20Hamb=C3=BCchen?= <mail@nh2.me>
Date: Wed, 21 Mar 2018 20:08:50 +0100
Subject: [PATCH 0458/1129] glusterfs: 3.12.2 -> 4.0.0

---
 .../network-filesystems/glusterfs.nix         |  3 ++
 pkgs/tools/filesystems/glusterfs/default.nix  |  7 +++-
 ...glusterfs-python-remove-find_library.patch | 39 +++++++++++--------
 3 files changed, 30 insertions(+), 19 deletions(-)

diff --git a/nixos/modules/services/network-filesystems/glusterfs.nix b/nixos/modules/services/network-filesystems/glusterfs.nix
index 8ac9f801dcb8..adf59100f067 100644
--- a/nixos/modules/services/network-filesystems/glusterfs.nix
+++ b/nixos/modules/services/network-filesystems/glusterfs.nix
@@ -198,6 +198,9 @@ in
         install -m 0755 -d /var/log/glusterfs
       '';
 
+      # glustereventsd uses the `gluster` executable
+      path = [ glusterfs ];
+
       serviceConfig = {
         Type="simple";
         Environment="PYTHONPATH=${glusterfs}/usr/lib/python2.7/site-packages";
diff --git a/pkgs/tools/filesystems/glusterfs/default.nix b/pkgs/tools/filesystems/glusterfs/default.nix
index f4aa9a52fce3..e915cc1c132a 100644
--- a/pkgs/tools/filesystems/glusterfs/default.nix
+++ b/pkgs/tools/filesystems/glusterfs/default.nix
@@ -15,10 +15,10 @@ let
     #       The command
     #         find /nix/store/...-glusterfs-.../ -name '*.py' -executable
     #       can help with finding new Python scripts.
-    version = "3.12.12";
+    version = "4.0.0";
     name="${baseName}-${version}";
     url="https://github.com/gluster/glusterfs/archive/v${version}.tar.gz";
-    sha256 = "1q6rcf9y98w3kvgwdlbhl65phkdl0mfil6y7i3gnpf3d21gfb6nw";
+    sha256 = "0af3fwiixddds6gdwhkyq3l214mmjl2wpjc2qayp5rpz79lnclq3";
   };
   buildInputs = [
     fuse bison flex_2_5_35 openssl ncurses readline
@@ -70,10 +70,13 @@ rec {
   '';
 
   patches = [
+    # Remove when https://bugzilla.redhat.com/show_bug.cgi?id=1450546 is fixed
     ./glusterfs-use-PATH-instead-of-hardcodes.patch
+    # Remove when https://bugzilla.redhat.com/show_bug.cgi?id=1450593 is fixed
     ./glusterfs-python-remove-find_library.patch
     # Remove when https://bugzilla.redhat.com/show_bug.cgi?id=1489610 is fixed
     ./glusterfs-fix-bug-1489610-glusterfind-var-data-under-prefix.patch
+    # Remove when https://bugzilla.redhat.com/show_bug.cgi?id=1559130 is fixed
     ./glusterfs-glusterfind-log-remote-node_cmd-error.patch
   ];
 
diff --git a/pkgs/tools/filesystems/glusterfs/glusterfs-python-remove-find_library.patch b/pkgs/tools/filesystems/glusterfs/glusterfs-python-remove-find_library.patch
index 6dd1baad5dff..4757f2fce771 100644
--- a/pkgs/tools/filesystems/glusterfs/glusterfs-python-remove-find_library.patch
+++ b/pkgs/tools/filesystems/glusterfs/glusterfs-python-remove-find_library.patch
@@ -1,21 +1,23 @@
-From d321df349d10f038f0c89b9c11f8059572264f1b Mon Sep 17 00:00:00 2001
+From e6293e367f56833457291e32a4df7b21a52365a7 Mon Sep 17 00:00:00 2001
 From: =?UTF-8?q?Niklas=20Hamb=C3=BCchen?= <mail@nh2.me>
 Date: Sat, 13 May 2017 18:54:36 +0200
 Subject: [PATCH] python: Remove all uses of find_library. Fixes #1450593
 
 `find_library()` doesn't consider LD_LIBRARY_PATH on Python < 3.6.
+
+Change-Id: Iee26085cb5d14061001f19f032c2664d69a378a8
 ---
  api/examples/getvolfile.py                                     |  2 +-
  geo-replication/syncdaemon/libcxattr.py                        |  3 +--
- geo-replication/syncdaemon/libgfchangelog.py                   |  3 +--
+ geo-replication/syncdaemon/libgfchangelog.py                   |  6 ++----
  tests/features/ipctest.py                                      | 10 ++--------
  tests/utils/libcxattr.py                                       |  5 ++---
  tools/glusterfind/src/libgfchangelog.py                        |  3 +--
  .../features/changelog/lib/examples/python/libgfchangelog.py   |  3 +--
- 7 files changed, 9 insertions(+), 20 deletions(-)
+ 7 files changed, 10 insertions(+), 22 deletions(-)
 
 diff --git a/api/examples/getvolfile.py b/api/examples/getvolfile.py
-index 0c95213..32c2268 100755
+index 0c95213f0..32c2268b3 100755
 --- a/api/examples/getvolfile.py
 +++ b/api/examples/getvolfile.py
 @@ -3,7 +3,7 @@
@@ -28,7 +30,7 @@ index 0c95213..32c2268 100755
                                   ctypes.c_void_p,
                                   ctypes.c_ulong]
 diff --git a/geo-replication/syncdaemon/libcxattr.py b/geo-replication/syncdaemon/libcxattr.py
-index 3671e10..f576648 100644
+index 3671e102c..f576648b7 100644
 --- a/geo-replication/syncdaemon/libcxattr.py
 +++ b/geo-replication/syncdaemon/libcxattr.py
 @@ -10,7 +10,6 @@
@@ -49,25 +51,28 @@ index 3671e10..f576648 100644
      @classmethod
      def geterrno(cls):
 diff --git a/geo-replication/syncdaemon/libgfchangelog.py b/geo-replication/syncdaemon/libgfchangelog.py
-index d87b56c..003c28c 100644
+index 334f5e9ea..093ae157a 100644
 --- a/geo-replication/syncdaemon/libgfchangelog.py
 +++ b/geo-replication/syncdaemon/libgfchangelog.py
-@@ -10,12 +10,11 @@
+@@ -9,14 +9,12 @@
+ #
  
  import os
- from ctypes import CDLL, RTLD_GLOBAL, create_string_buffer, get_errno, byref, c_ulong
+-from ctypes import CDLL, RTLD_GLOBAL, create_string_buffer, \
+-    get_errno, byref, c_ulong
 -from ctypes.util import find_library
++from ctypes import CDLL, RTLD_GLOBAL, create_string_buffer, get_errno, byref, c_ulong
  from syncdutils import ChangelogException, ChangelogHistoryNotAvailable
  
  
  class Changes(object):
--    libgfc = CDLL(find_library("gfchangelog"), mode=RTLD_GLOBAL, use_errno=True)
-+    libgfc = CDLL("libgfchangelog.so", mode=RTLD_GLOBAL, use_errno=True)
+-    libgfc = CDLL(find_library("gfchangelog"), mode=RTLD_GLOBAL,
++    libgfc = CDLL("libgfchangelog.so", mode=RTLD_GLOBAL,
+                   use_errno=True)
  
      @classmethod
-     def geterrno(cls):
 diff --git a/tests/features/ipctest.py b/tests/features/ipctest.py
-index 5aff319..9339248 100755
+index 5aff319b8..933924861 100755
 --- a/tests/features/ipctest.py
 +++ b/tests/features/ipctest.py
 @@ -1,14 +1,8 @@
@@ -88,7 +93,7 @@ index 5aff319..9339248 100755
  api.glfs_ipc.argtypes = [ ctypes.c_void_p, ctypes.c_int, ctypes.c_void_p, ctypes.c_void_p ]
  api.glfs_ipc.restype = ctypes.c_int
 diff --git a/tests/utils/libcxattr.py b/tests/utils/libcxattr.py
-index 149db72..4e6e6c4 100644
+index 149db72e6..4e6e6c46d 100644
 --- a/tests/utils/libcxattr.py
 +++ b/tests/utils/libcxattr.py
 @@ -11,7 +11,6 @@
@@ -112,10 +117,10 @@ index 149db72..4e6e6c4 100644
      @classmethod
      def geterrno(cls):
 diff --git a/tools/glusterfind/src/libgfchangelog.py b/tools/glusterfind/src/libgfchangelog.py
-index dd8153e..da822cf 100644
+index 0f6b40d6c..9ca3f326b 100644
 --- a/tools/glusterfind/src/libgfchangelog.py
 +++ b/tools/glusterfind/src/libgfchangelog.py
-@@ -12,14 +12,13 @@
+@@ -11,14 +11,13 @@
  import os
  from ctypes import CDLL, get_errno, create_string_buffer, c_ulong, byref
  from ctypes import RTLD_GLOBAL
@@ -132,7 +137,7 @@ index dd8153e..da822cf 100644
  
  def raise_oserr():
 diff --git a/xlators/features/changelog/lib/examples/python/libgfchangelog.py b/xlators/features/changelog/lib/examples/python/libgfchangelog.py
-index 10e73c0..2cdbf11 100644
+index 10e73c02b..2cdbf1152 100644
 --- a/xlators/features/changelog/lib/examples/python/libgfchangelog.py
 +++ b/xlators/features/changelog/lib/examples/python/libgfchangelog.py
 @@ -1,9 +1,8 @@
@@ -147,5 +152,5 @@ index 10e73c0..2cdbf11 100644
      @classmethod
      def geterrno(cls):
 -- 
-2.7.4
+2.12.0
 

From 7859957e569755fe8e1a716e8a8202fb45088148 Mon Sep 17 00:00:00 2001
From: Timo Kaufmann <timokau@zoho.com>
Date: Sun, 4 Nov 2018 11:30:14 +0100
Subject: [PATCH 0459/1129] spotify: 1.0.83.316.ge96b6e67-5 ->
 1.0.93.242.gc2341a27-15

---
 pkgs/applications/audio/spotify/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/audio/spotify/default.nix b/pkgs/applications/audio/spotify/default.nix
index cbcf5220564b..15aaab40a678 100644
--- a/pkgs/applications/audio/spotify/default.nix
+++ b/pkgs/applications/audio/spotify/default.nix
@@ -5,14 +5,14 @@
 let
   # TO UPDATE: just execute the ./update.sh script (won't do anything if there is no update)
   # "rev" decides what is actually being downloaded
-  version = "1.0.83.316.ge96b6e67-5";
+  version = "1.0.93.242.gc2341a27-15";
   # To get the latest stable revision:
   # curl -H 'X-Ubuntu-Series: 16' 'https://api.snapcraft.io/api/v1/snaps/details/spotify?channel=stable' | jq '.download_url,.version,.last_updated'
   # To get general information:
   # curl -H 'Snap-Device-Series: 16' 'https://api.snapcraft.io/v2/snaps/info/spotify' | jq '.'
   # More examples of api usage:
   # https://github.com/canonical-websites/snapcraft.io/blob/master/webapp/publisher/snaps/views.py
-  rev = "17";
+  rev = "24";
 
 
   deps = [
@@ -65,7 +65,7 @@ stdenv.mkDerivation {
   # https://community.spotify.com/t5/Desktop-Linux/Redistribute-Spotify-on-Linux-Distributions/td-p/1695334
   src = fetchurl {
     url = "https://api.snapcraft.io/api/v1/snaps/download/pOBIoZ2LrCB3rDohMxoYGnbN14EHOgD7_${rev}.snap";
-    sha512 = "19bbr4142shsl4qrikf48vq7kyrd4k4jbsada13qxicxps46a9bx51vjm2hkijqv739c1gdkgzwx7llyk95z26lhrz53shm2n5ij8xi";
+    sha512 = "920d55b3dcad4ac6acd9bc73c8ad8eb1668327a175da465ce3d8bba2430da47aaefa5218659315fab43b5182611eb03047d4e2679c1345c57380b7def7a1212d";
   };
 
   buildInputs = [ squashfsTools makeWrapper ];

From cea0e9226f09a7887a82094a06d77809181b615f Mon Sep 17 00:00:00 2001
From: Yegor Timoshenko <yegortimoshenko@riseup.net>
Date: Sun, 4 Nov 2018 11:33:34 +0000
Subject: [PATCH 0460/1129] chrootenv: use meson

---
 .../build-fhs-userenv/chrootenv/default.nix          | 12 ++++--------
 .../build-fhs-userenv/chrootenv/meson.build          |  5 +++++
 pkgs/build-support/build-fhs-userenv/default.nix     |  4 ++--
 3 files changed, 11 insertions(+), 10 deletions(-)
 create mode 100644 pkgs/build-support/build-fhs-userenv/chrootenv/meson.build

diff --git a/pkgs/build-support/build-fhs-userenv/chrootenv/default.nix b/pkgs/build-support/build-fhs-userenv/chrootenv/default.nix
index 4ab8c248e2fa..70a7a43bd398 100644
--- a/pkgs/build-support/build-fhs-userenv/chrootenv/default.nix
+++ b/pkgs/build-support/build-fhs-userenv/chrootenv/default.nix
@@ -1,19 +1,15 @@
-{ stdenv, pkgconfig, glib }:
+{ stdenv, meson, ninja, pkgconfig, glib }:
 
 stdenv.mkDerivation {
   name = "chrootenv";
+  src = ./.;
 
-  nativeBuildInputs = [ pkgconfig ];
+  nativeBuildInputs = [ meson ninja pkgconfig ];
   buildInputs = [ glib ];
 
-  buildCommand = ''
-    cc ${./chrootenv.c} $(pkg-config --cflags --libs glib-2.0) -o $out
-    ${stdenv.cc.bintools.bintools}/bin/strip $out
-  '';
-
   meta = with stdenv.lib; {
     description = "Setup mount/user namespace for FHS emulation";
-    license = licenses.free;
+    license = licenses.mit;
     maintainers = with maintainers; [ yegortimoshenko ];
     platforms = platforms.linux;
   };
diff --git a/pkgs/build-support/build-fhs-userenv/chrootenv/meson.build b/pkgs/build-support/build-fhs-userenv/chrootenv/meson.build
new file mode 100644
index 000000000000..6d0770a0dc4a
--- /dev/null
+++ b/pkgs/build-support/build-fhs-userenv/chrootenv/meson.build
@@ -0,0 +1,5 @@
+project('chrootenv', 'c')
+
+glib = dependency('glib-2.0')
+
+executable('chrootenv', 'chrootenv.c', dependencies: [glib], install: true)
diff --git a/pkgs/build-support/build-fhs-userenv/default.nix b/pkgs/build-support/build-fhs-userenv/default.nix
index 2bad200efc4d..707b256cd4b4 100644
--- a/pkgs/build-support/build-fhs-userenv/default.nix
+++ b/pkgs/build-support/build-fhs-userenv/default.nix
@@ -28,7 +28,7 @@ in runCommand name {
   passthru = passthru // {
     env = runCommand "${name}-shell-env" {
       shellHook = ''
-        exec ${chrootenv} ${init runScript} "$(pwd)"
+        exec ${chrootenv}/bin/chrootenv ${init runScript} "$(pwd)"
       '';
     } ''
       echo >&2 ""
@@ -41,7 +41,7 @@ in runCommand name {
   mkdir -p $out/bin
   cat <<EOF >$out/bin/${name}
   #! ${stdenv.shell}
-  exec ${chrootenv} ${init runScript} "\$(pwd)" "\$@"
+  exec ${chrootenv}/bin/chrootenv ${init runScript} "\$(pwd)" "\$@"
   EOF
   chmod +x $out/bin/${name}
   ${extraInstallCommands}

From 1ee4c6451140b4be277afce6d7d6c50adcdc1e59 Mon Sep 17 00:00:00 2001
From: nyanloutre <paul@nyanlout.re>
Date: Sun, 4 Nov 2018 12:47:22 +0100
Subject: [PATCH 0461/1129] pythonPackages.httmock: init at 1.2.6

---
 .../python-modules/httmock/default.nix        | 22 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 24 insertions(+)
 create mode 100644 pkgs/development/python-modules/httmock/default.nix

diff --git a/pkgs/development/python-modules/httmock/default.nix b/pkgs/development/python-modules/httmock/default.nix
new file mode 100644
index 000000000000..b50753c55864
--- /dev/null
+++ b/pkgs/development/python-modules/httmock/default.nix
@@ -0,0 +1,22 @@
+{ stdenv, buildPythonPackage, fetchFromGitHub, requests }:
+
+buildPythonPackage rec {
+  pname   = "httmock";
+  version = "1.2.6";
+
+  src = fetchFromGitHub {
+    owner = "patrys";
+    repo = "httmock";
+    rev = version;
+    sha256 = "0iya8qsb2jm03s9p6sf1yzgm1irxl3dcq0k0a9ygl0skzjz5pvab";
+  };
+
+  checkInputs = [ requests ];
+
+  meta = with stdenv.lib; {
+    description = "A mocking library for requests";
+    homepage    = https://github.com/patrys/httmock;
+    license     = licenses.asl20;
+    maintainers = with maintainers; [ nyanloutre ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 6c5870b529c1..3d73c3d04b41 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -2438,6 +2438,8 @@ in {
 
   html5lib = callPackage ../development/python-modules/html5lib { };
 
+  httmock = callPackage ../development/python-modules/httmock { };
+
   http_signature = callPackage ../development/python-modules/http_signature { };
 
   httpbin = callPackage ../development/python-modules/httpbin { };

From 2e49503dfe4cc6dd857476bd904729eaba9dfab8 Mon Sep 17 00:00:00 2001
From: nyanloutre <paul@nyanlout.re>
Date: Sun, 4 Nov 2018 12:47:46 +0100
Subject: [PATCH 0462/1129] pythonPackages.python-gitlab: init at 1.6.0

---
 .../python-modules/python-gitlab/default.nix  | 22 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 24 insertions(+)
 create mode 100644 pkgs/development/python-modules/python-gitlab/default.nix

diff --git a/pkgs/development/python-modules/python-gitlab/default.nix b/pkgs/development/python-modules/python-gitlab/default.nix
new file mode 100644
index 000000000000..24ab69f1a0bc
--- /dev/null
+++ b/pkgs/development/python-modules/python-gitlab/default.nix
@@ -0,0 +1,22 @@
+{ stdenv, buildPythonPackage, fetchPypi, requests, six, mock, httmock }:
+
+buildPythonPackage rec {
+  pname   = "python-gitlab";
+  version = "1.6.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "20ceb9232f9a412ce6554056a6b5039013d0755261d57b5c8ada7035773de795";
+  };
+
+  propagatedBuildInputs = [ requests six ];
+
+  checkInputs = [ mock httmock ];
+
+  meta = with stdenv.lib; {
+    description = "Interact with GitLab API";
+    homepage    = https://github.com/python-gitlab/python-gitlab;
+    license     = licenses.lgpl3;
+    maintainers = with maintainers; [ nyanloutre ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 3d73c3d04b41..7e8bd2c3448a 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -1626,6 +1626,8 @@ in {
     inherit (pkgs.gitAndTools) git-annex;
   };
 
+  python-gitlab = callPackage ../development/python-modules/python-gitlab { };
+
   google-cloud-sdk = callPackage ../tools/admin/google-cloud-sdk { };
   google-cloud-sdk-gce = callPackage ../tools/admin/google-cloud-sdk { with-gce=true; };
 

From c4f6745e72ec2db0430c2a91dde28a03700e9147 Mon Sep 17 00:00:00 2001
From: Robert Hensing <roberth@users.noreply.github.com>
Date: Sun, 4 Nov 2018 13:06:13 +0100
Subject: [PATCH 0463/1129] nixos: programs.bash: Fix comment about completion

`XDG_DATA_DIRS` already includes what is typically the `share` directory.
Adding an extra `share` breaks it.
---
 nixos/modules/programs/bash/bash.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nixos/modules/programs/bash/bash.nix b/nixos/modules/programs/bash/bash.nix
index 0fbc77ea44cf..d325fff6a572 100644
--- a/nixos/modules/programs/bash/bash.nix
+++ b/nixos/modules/programs/bash/bash.nix
@@ -16,7 +16,7 @@ let
     # programmable completion. If we do, enable all modules installed in
     # the system and user profile in obsolete /etc/bash_completion.d/
     # directories. Bash loads completions in all
-    # $XDG_DATA_DIRS/share/bash-completion/completions/
+    # $XDG_DATA_DIRS/bash-completion/completions/
     # on demand, so they do not need to be sourced here.
     if shopt -q progcomp &>/dev/null; then
       . "${pkgs.bash-completion}/etc/profile.d/bash_completion.sh"

From b02355b6e137bf71da4429b55311c3ece0c46a0a Mon Sep 17 00:00:00 2001
From: Edmund Wu <fangkazuto@gmail.com>
Date: Sat, 3 Nov 2018 08:39:44 -0400
Subject: [PATCH 0464/1129] glava: 1.5.5 -> 1.5.8

---
 pkgs/applications/misc/glava/default.nix | 11 ++++++-----
 1 file changed, 6 insertions(+), 5 deletions(-)

diff --git a/pkgs/applications/misc/glava/default.nix b/pkgs/applications/misc/glava/default.nix
index 7e32e566234e..0cac0e6fd3f5 100644
--- a/pkgs/applications/misc/glava/default.nix
+++ b/pkgs/applications/misc/glava/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchgit, fetchurl, writeScript
+{ stdenv, writeScript, fetchFromGitHub
 , libGL, libX11, libXext, python3, libXrandr, libXrender, libpulseaudio, libXcomposite
 , enableGlfw ? false, glfw }:
 
@@ -22,12 +22,13 @@ let
 in
   stdenv.mkDerivation rec {
     name = "glava-${version}";
-    version = "1.5.5";
+    version = "1.5.8";
 
-    src = fetchgit {
-      url = "https://github.com/wacossusca34/glava.git";
+    src = fetchFromGitHub {
+      owner = "wacossusca34";
+      repo = "glava";
       rev = "v${version}";
-      sha256 = "0mpbgllwz45wkax6pgvnh1pz2q4yvbzq2l8z8kff13wrsdvl8lh0";
+      sha256 = "0mps82qw2mhxx8069jvqz1v8n4x7ybrrjv92ij6cms8xi1y8v0fm";
     };
 
     buildInputs = [

From b0f7c8609488c7db6d6f7dd0c1b6f92a27cba65d Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Sun, 4 Nov 2018 07:30:14 -0600
Subject: [PATCH 0465/1129] timescaledb: fix license (Apache 2.0, not
 PostgreSQL)

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 pkgs/servers/sql/postgresql/timescaledb/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/servers/sql/postgresql/timescaledb/default.nix b/pkgs/servers/sql/postgresql/timescaledb/default.nix
index 07dcfb0b7018..3c53054ba7de 100644
--- a/pkgs/servers/sql/postgresql/timescaledb/default.nix
+++ b/pkgs/servers/sql/postgresql/timescaledb/default.nix
@@ -46,6 +46,6 @@ stdenv.mkDerivation rec {
     homepage    = https://www.timescale.com/;
     maintainers = with maintainers; [ volth ];
     platforms   = platforms.linux;
-    license     = licenses.postgresql;
+    license     = licenses.asl20;
   };
 }

From 423f4f478ed57fbfa6faebb7de24680fccee690b Mon Sep 17 00:00:00 2001
From: Will Dietz <w@wdtz.org>
Date: Sun, 4 Nov 2018 05:51:13 -0600
Subject: [PATCH 0466/1129] xapian: 1.4.8 -> 1.4.9

https://xapian.org/docs/xapian-core-1.4.9/NEWS
---
 pkgs/development/libraries/xapian/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/libraries/xapian/default.nix b/pkgs/development/libraries/xapian/default.nix
index 7b92c1c66cd7..2d7289ca6647 100644
--- a/pkgs/development/libraries/xapian/default.nix
+++ b/pkgs/development/libraries/xapian/default.nix
@@ -36,5 +36,5 @@ let
 in {
   # xapian-ruby needs 1.2.22 as of 2017-05-06
   xapian_1_2_22 = generic "1.2.22" "0zsji22n0s7cdnbgj0kpil05a6bgm5cfv0mvx12d8ydg7z58g6r6";
-  xapian_1_4 = generic "1.4.8" "0528841hn5lddaa317ax3i3d01zf1izpzh4njiz6s84mxpn06q6s";
+  xapian_1_4 = generic "1.4.9" "1k7m7m9jld96k16ansfw2w3c354pvd8ibhnrb6dw012g06fw7sfd";
 }

From 05f368b60a68cdb76a70a499c2c413e16bf7ab51 Mon Sep 17 00:00:00 2001
From: Jonathan Queiroz <github@johnjq.com>
Date: Sun, 4 Nov 2018 11:00:21 -0300
Subject: [PATCH 0467/1129] pythonPackages.sslib: init at 0.2.0 (#47985)

---
 .../python-modules/sslib/default.nix          | 22 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 24 insertions(+)
 create mode 100644 pkgs/development/python-modules/sslib/default.nix

diff --git a/pkgs/development/python-modules/sslib/default.nix b/pkgs/development/python-modules/sslib/default.nix
new file mode 100644
index 000000000000..3e5be211d42b
--- /dev/null
+++ b/pkgs/development/python-modules/sslib/default.nix
@@ -0,0 +1,22 @@
+{ stdenv, fetchPypi, buildPythonPackage, isPy3k }:
+
+buildPythonPackage rec {
+  pname = "sslib";
+  version = "0.2.0";
+  disabled = !isPy3k;
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0b5zrjkvx4klmv57pzhcmvbkdlyn745mn02k7hp811hvjrhbz417";
+  };
+
+  # No tests available
+  doCheck = false;
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/jqueiroz/python-sslib;
+    description = "A Python3 library for sharing secrets";
+    license = licenses.mit;
+    maintainers = with maintainers; [ jqueiroz ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index cc608eacb1a2..41631a7dba28 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -662,6 +662,8 @@ in {
 
   spglib = callPackage ../development/python-modules/spglib { };
 
+  sslib = callPackage ../development/python-modules/sslib { };
+
   statistics = callPackage ../development/python-modules/statistics { };
 
   sumo = callPackage ../development/python-modules/sumo { };

From 0de150e0f2878995716f398eec04ddca220d6cfc Mon Sep 17 00:00:00 2001
From: Andreas Rammhold <andreas@rammhold.de>
Date: Sun, 4 Nov 2018 14:28:53 +0100
Subject: [PATCH 0468/1129] nixos/prometheus: add `package` option

With a package option we can let the user decide what package to use for
prometheus without requiring an overlay.
---
 .../services/monitoring/prometheus/default.nix        | 11 ++++++++++-
 1 file changed, 10 insertions(+), 1 deletion(-)

diff --git a/nixos/modules/services/monitoring/prometheus/default.nix b/nixos/modules/services/monitoring/prometheus/default.nix
index e2ee995cea80..63b7d1c0bd4e 100644
--- a/nixos/modules/services/monitoring/prometheus/default.nix
+++ b/nixos/modules/services/monitoring/prometheus/default.nix
@@ -376,6 +376,15 @@ in {
         '';
       };
 
+      package = mkOption {
+        type = types.package;
+        default = pkgs.prometheus;
+        defaultText = "pkgs.prometheus";
+        description = ''
+          The prometheus package that should be used.
+        '';
+      };
+
       listenAddress = mkOption {
         type = types.str;
         default = "0.0.0.0:9090";
@@ -495,7 +504,7 @@ in {
       after    = [ "network.target" ];
       script = ''
         #!/bin/sh
-        exec ${pkgs.prometheus}/bin/prometheus \
+        exec ${cfg.package}/bin/prometheus \
           ${concatStringsSep " \\\n  " cmdlineArgs}
       '';
       serviceConfig = {

From 6795bdd58ca1f1504833428365f32bd023bb1aeb Mon Sep 17 00:00:00 2001
From: Andreas Rammhold <andreas@rammhold.de>
Date: Sun, 4 Nov 2018 14:30:47 +0100
Subject: [PATCH 0469/1129] nixos/prometheus: check configuration before
 starting service

With `promtool` we can check the validity of a configuration before
deploying it. This avoids situations where you would end up with a
broken monitoring system without noticing it - since the monitoring
broke down. :-)
---
 .../services/monitoring/prometheus/default.nix | 18 +++++++++++++-----
 1 file changed, 13 insertions(+), 5 deletions(-)

diff --git a/nixos/modules/services/monitoring/prometheus/default.nix b/nixos/modules/services/monitoring/prometheus/default.nix
index 63b7d1c0bd4e..bf4dfc666bb6 100644
--- a/nixos/modules/services/monitoring/prometheus/default.nix
+++ b/nixos/modules/services/monitoring/prometheus/default.nix
@@ -10,6 +10,13 @@ let
   # Get a submodule without any embedded metadata:
   _filter = x: filterAttrs (k: v: k != "_module") x;
 
+  # a wrapper that verifies that the configuration is valid
+  promtoolCheck = what: name: file: pkgs.runCommand "${name}-${what}-checked"
+    { buildInputs = [ cfg.package ]; } ''
+    ln -s ${file} $out
+    promtool ${what} $out
+  '';
+
   # Pretty-print JSON to a file
   writePrettyJSON = name: x:
     pkgs.runCommand name { } ''
@@ -19,18 +26,19 @@ let
   # This becomes the main config file
   promConfig = {
     global = cfg.globalConfig;
-    rule_files = cfg.ruleFiles ++ [
+    rule_files = map (promtoolCheck "check-rules" "rules") (cfg.ruleFiles ++ [
       (pkgs.writeText "prometheus.rules" (concatStringsSep "\n" cfg.rules))
-    ];
+    ]);
     scrape_configs = cfg.scrapeConfigs;
   };
 
   generatedPrometheusYml = writePrettyJSON "prometheus.yml" promConfig;
 
-  prometheusYml =
-    if cfg.configText != null then
+  prometheusYml = let
+    yml =  if cfg.configText != null then
       pkgs.writeText "prometheus.yml" cfg.configText
-    else generatedPrometheusYml;
+      else generatedPrometheusYml;
+    in promtoolCheck "check-config" "prometheus.yml" yml;
 
   cmdlineArgs = cfg.extraFlags ++ [
     "-storage.local.path=${cfg.dataDir}/metrics"

From da0db2102917c6e53aafc77781f61f497b438d02 Mon Sep 17 00:00:00 2001
From: Trolli Schmittlauch <t.schmittlauch@orlives.de>
Date: Sun, 4 Nov 2018 13:23:26 +0100
Subject: [PATCH 0470/1129] vim-plugins: add jedi-vim

As this is a python3 plugin it'd be nice to check for python3 support in
the used vim, but apparently nobody else does this.
---
 pkgs/misc/vim-plugins/generated.nix    | 11 +++++++++++
 pkgs/misc/vim-plugins/overrides.nix    |  9 +++++++++
 pkgs/misc/vim-plugins/vim-plugin-names |  3 ++-
 3 files changed, 22 insertions(+), 1 deletion(-)

diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix
index bd3458b98c8b..9a131b3afabd 100644
--- a/pkgs/misc/vim-plugins/generated.nix
+++ b/pkgs/misc/vim-plugins/generated.nix
@@ -718,6 +718,17 @@
     };
   };
 
+  jedi-vim = buildVimPluginFrom2Nix {
+    name = "jedi-vim-2018-10-14";
+    src = fetchFromGitHub {
+      owner = "davidhalter";
+      repo = "jedi-vim";
+      rev = "b6dfc5fd49c26d4dbe9f54c814956567a7a9b3a8";
+      sha256 = "11wvynjl1m23vdp4wvirhmm7vnpji5affbyhwz67yjkvh6c42xqa";
+      fetchSubmodules = true;
+    };
+  };
+
   Jenkinsfile-vim-syntax = buildVimPluginFrom2Nix {
     name = "Jenkinsfile-vim-syntax-2018-09-25";
     src = fetchFromGitHub {
diff --git a/pkgs/misc/vim-plugins/overrides.nix b/pkgs/misc/vim-plugins/overrides.nix
index 6b8bf42c795f..8ed7a9446711 100644
--- a/pkgs/misc/vim-plugins/overrides.nix
+++ b/pkgs/misc/vim-plugins/overrides.nix
@@ -334,4 +334,13 @@ with generated;
     };
   });
 
+  jedi-vim = jedi-vim.overrideAttrs(old: {
+    # checking for python3 support in vim would be neat, too, but nobody else seems to care
+    buildInputs = [ python3Packages.jedi ];
+    meta = {
+      description = "code-completion for python using python-jedi";
+      license = stdenv.lib.licenses.mit;
+    };
+  });
+
 }
diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names
index bccb97b72d27..33049c834a26 100644
--- a/pkgs/misc/vim-plugins/vim-plugin-names
+++ b/pkgs/misc/vim-plugins/vim-plugin-names
@@ -37,14 +37,15 @@ ctjhoa/spacevim
 ctrlpvim/ctrlp.vim
 dag/vim2hs
 dannyob/quickfixstatus
+davidhalter/jedi-vim
 derekelkins/agda-vim
 derekwyatt/vim-scala
 dhruvasagar/vim-table-mode
 digitaltoad/vim-jade
 dleonard0/pony-vim-syntax
 dracula/vim
-dylanaraps/wal.vim
 drmingdrmer/xptemplate
+dylanaraps/wal.vim
 eagletmt/ghcmod-vim
 eagletmt/neco-ghc
 easymotion/vim-easymotion

From f6b41dd3d1cca1182ebcbddbe2974c9dd92102c4 Mon Sep 17 00:00:00 2001
From: Trolli Schmittlauch <t.schmittlauch@orlives.de>
Date: Sun, 4 Nov 2018 13:24:44 +0100
Subject: [PATCH 0471/1129] vim-plugins: automatic version bumps

The recommended ./update.py script for adding new plugins also bumps the
version of already existing plugins.
---
 pkgs/misc/vim-plugins/generated.nix | 96 ++++++++++++++---------------
 1 file changed, 48 insertions(+), 48 deletions(-)

diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix
index 9a131b3afabd..d9ceb20e9412 100644
--- a/pkgs/misc/vim-plugins/generated.nix
+++ b/pkgs/misc/vim-plugins/generated.nix
@@ -53,12 +53,12 @@
   };
 
   ale = buildVimPluginFrom2Nix {
-    name = "ale-2018-10-29";
+    name = "ale-2018-10-31";
     src = fetchFromGitHub {
       owner = "w0rp";
       repo = "ale";
-      rev = "cae40e1c347064bd3ab5eb4c04e9e357d3d82105";
-      sha256 = "0f7qsp0gpafk7fimcbivx2cm53hpjz6hr6lzdg8wnxcm0gdw7827";
+      rev = "4b841b55869e3ec5b02806f9b2fe962ffdca2750";
+      sha256 = "0wa8phv4b6n1akaii8qy9c0lr17vm4bqgz5chjx28zs73jfxsf2i";
     };
   };
 
@@ -93,12 +93,12 @@
   };
 
   awesome-vim-colorschemes = buildVimPluginFrom2Nix {
-    name = "awesome-vim-colorschemes-2018-01-20";
+    name = "awesome-vim-colorschemes-2018-10-30";
     src = fetchFromGitHub {
       owner = "rafi";
       repo = "awesome-vim-colorschemes";
-      rev = "8d2b6657bdbe4f7253e320c741bc4c1fc2f2f41d";
-      sha256 = "1wfm6rsmyqldxwcz0ic4rq7kf00fgsx00rg42cl9yya35nqiri2z";
+      rev = "21d1c93da95d58bead99f3226f9447f5b035afe1";
+      sha256 = "1niwwyxgq7k7mbi05lnpz12lbmn9mam9x4qvzxcbvxsqqp2zzsj8";
     };
   };
 
@@ -910,12 +910,12 @@
   };
 
   neco-vim = buildVimPluginFrom2Nix {
-    name = "neco-vim-2017-10-01";
+    name = "neco-vim-2018-10-30";
     src = fetchFromGitHub {
       owner = "Shougo";
       repo = "neco-vim";
-      rev = "f5397c5e800d65a58c56d8f1b1b92686b05f4ca9";
-      sha256 = "0yb7ja6qgrazszk4i01cwjj00j9vd43zs2r11b08iy8n10jnzr73";
+      rev = "4c0203b44f8daa7e2f72e2514488d637e8a766a4";
+      sha256 = "03v3h2ks6y9pl960lnvzxlfhnn6l2pcn6d6012znw2wqpralrjq2";
     };
   };
 
@@ -960,12 +960,12 @@
   };
 
   neomake = buildVimPluginFrom2Nix {
-    name = "neomake-2018-10-28";
+    name = "neomake-2018-10-29";
     src = fetchFromGitHub {
       owner = "benekastah";
       repo = "neomake";
-      rev = "35f4c002d55d5f722a08eb9acf126f7717072812";
-      sha256 = "0ad5dqyjpwn78nadg90jd03n0mkllm0r4jxq72h77dwxsd1prgl9";
+      rev = "c15d51ea9f622b8bce469a18833a6ac64f6a1193";
+      sha256 = "1l15y0di6k4v0vrwpd86lp2n5ljfjnzncgpxwmbhqb2xznr7caq7";
     };
   };
 
@@ -1020,12 +1020,12 @@
   };
 
   nerdtree = buildVimPluginFrom2Nix {
-    name = "nerdtree-2018-10-25";
+    name = "nerdtree-2018-10-31";
     src = fetchFromGitHub {
       owner = "scrooloose";
       repo = "nerdtree";
-      rev = "91e0f2253fbecefa7e14f095950341584877ef19";
-      sha256 = "1lkmxplrv211drzmwi93v1fmicdjm146vl471s3h21y77k0hd2f5";
+      rev = "8d005db94f8d1a214d172aeb1008d016c3d201e2";
+      sha256 = "0f8dljl45ph668kwjf0py0891i3aqfdijplarxnblbkp2zn5ij7g";
     };
   };
 
@@ -1490,12 +1490,12 @@
   };
 
   tsuquyomi = buildVimPluginFrom2Nix {
-    name = "tsuquyomi-2018-08-03";
+    name = "tsuquyomi-2018-10-31";
     src = fetchFromGitHub {
       owner = "Quramy";
       repo = "tsuquyomi";
-      rev = "05e6515f6d21545959ac4eb570c917e1d225b1f1";
-      sha256 = "0hbd2d8zb86c8ncrrm4zyj92j523xay2lwk2k9arwacn8fj42hir";
+      rev = "bdd034d06ed47176ec1ee0bd3dae5bc0aeb053e3";
+      sha256 = "119dxmkarbh0b0k4l59mxr19shks4mv96j3mbz02q0kdq18bgrdq";
     };
   };
 
@@ -1550,12 +1550,12 @@
   };
 
   vim = buildVimPluginFrom2Nix {
-    name = "vim-2018-10-27";
+    name = "vim-2018-10-30";
     src = fetchFromGitHub {
       owner = "dracula";
       repo = "vim";
-      rev = "854886980635eb70e119d2bd3bb94a0ce46fc71d";
-      sha256 = "1ff88clly227cj83ng6bwc8jn3zp20614agg94izqhsxr5bpdp5z";
+      rev = "66755a9cb9bdea62720812a1165132de6ff62468";
+      sha256 = "0zca3spgnf00rxa0h5x79ydycz41b0xli7bgwpnbxannzxqswhiy";
     };
   };
 
@@ -1760,12 +1760,12 @@
   };
 
   vim-airline = buildVimPluginFrom2Nix {
-    name = "vim-airline-2018-10-22";
+    name = "vim-airline-2018-11-01";
     src = fetchFromGitHub {
       owner = "vim-airline";
       repo = "vim-airline";
-      rev = "08e9aa5386eecfd6a6cbde1eff240619cd81beed";
-      sha256 = "0g9rlr6067sqyp0l4yacnr14phx1wn2jvjcq2x2zwkc0b28hxyrs";
+      rev = "6516b1b4dccef543d489177431050fe8a5c5c99c";
+      sha256 = "0x4vdxz31vqyd3qy8vr4gcdc649nz72axris5fxj8ln5zphlr6ll";
     };
   };
 
@@ -1980,12 +1980,12 @@
   };
 
   vim-dispatch = buildVimPluginFrom2Nix {
-    name = "vim-dispatch-2018-10-02";
+    name = "vim-dispatch-2018-10-31";
     src = fetchFromGitHub {
       owner = "tpope";
       repo = "vim-dispatch";
-      rev = "ab7470d4b03bae9880bf2b5cef60fc0fb51b1101";
-      sha256 = "01slb3lcbdba0a4xky6i5xflh1cjm0aq6g8yyfzrgn4w8pq50h9p";
+      rev = "d4b8940fd1cd77fc6d300f003b18745a584295b2";
+      sha256 = "06g0xc55z9jpa5rl8c5af5apb8b2agahsxxzayl2vn763v9p1n6b";
     };
   };
 
@@ -2210,12 +2210,12 @@
   };
 
   vim-grepper = buildVimPluginFrom2Nix {
-    name = "vim-grepper-2018-10-29";
+    name = "vim-grepper-2018-10-30";
     src = fetchFromGitHub {
       owner = "mhinz";
       repo = "vim-grepper";
-      rev = "54cb4c55bd8d80fc046f62b8f6486db2de424399";
-      sha256 = "1bzzyh2yav9f54gn17ny8gpi5h70yvjqdyg9lg0b1rglvirjpb1r";
+      rev = "a55a14b97dc8ac848eeb95e71d095b75197ba665";
+      sha256 = "08p5dp43z9bxllr5fvl3hgnyqyxlvpbfczw1ydncmzvrqqccrx08";
     };
   };
 
@@ -2641,12 +2641,12 @@
   };
 
   vim-operator-surround = buildVimPluginFrom2Nix {
-    name = "vim-operator-surround-2017-12-22";
+    name = "vim-operator-surround-2018-11-01";
     src = fetchFromGitHub {
       owner = "rhysd";
       repo = "vim-operator-surround";
-      rev = "001c0da077b5b38a723151b19760d220e02363db";
-      sha256 = "0c6w6id57faw6sjf5wvw9qp2a4i7xj65q0c4hjs0spgzycv2wpkh";
+      rev = "80337a40a829cfc77b065a71d8a609e2ad7d2c8b";
+      sha256 = "0f9shg81bl39hz67ahbi6k6gbhky7gzp8by16fhiz75hbjgp9lq2";
     };
   };
 
@@ -2841,12 +2841,12 @@
   };
 
   vim-rhubarb = buildVimPluginFrom2Nix {
-    name = "vim-rhubarb-2018-09-20";
+    name = "vim-rhubarb-2018-10-31";
     src = fetchFromGitHub {
       owner = "tpope";
       repo = "vim-rhubarb";
-      rev = "3a9ddb8ffa46b9fa49f3d9372bbb5d64bdc5fd23";
-      sha256 = "1swybc30vyf309w1a34jf94xja1kikvrr3xpixfban50s6aiyips";
+      rev = "42072cc349c46db79c0a4411d399a2fe31cfda7e";
+      sha256 = "020fshfrwbycs4saci58k625330i2ndfh6lqnxz5h0pp2m5y6jp8";
     };
   };
 
@@ -2921,12 +2921,12 @@
   };
 
   vim-signify = buildVimPluginFrom2Nix {
-    name = "vim-signify-2018-10-01";
+    name = "vim-signify-2018-10-31";
     src = fetchFromGitHub {
       owner = "mhinz";
       repo = "vim-signify";
-      rev = "ce2dd937bf3a394ef2fbeda8ab56d2b4437be3c3";
-      sha256 = "08ah81bn0cmqphi2lw2y7pjdg8sw2wjwc3p3j6pj0gyqx2bsf408";
+      rev = "4e7faba8d32d56d80090dedc5328849a7128b73a";
+      sha256 = "0wm1kgklvd4b52lrqb9l7n511p8kaw8y9707962l4nrp8cbrbs31";
     };
   };
 
@@ -2991,22 +2991,22 @@
   };
 
   vim-speeddating = buildVimPluginFrom2Nix {
-    name = "vim-speeddating-2017-05-24";
+    name = "vim-speeddating-2018-10-31";
     src = fetchFromGitHub {
       owner = "tpope";
       repo = "vim-speeddating";
-      rev = "a418667791f03694065948342f2d6c5cca8d0f32";
-      sha256 = "1wm33izawazh0dy70zjk6rkg30yrlldba5r1gypnr4barps702gw";
+      rev = "799cd3473bc64adcb6b556bf349f549570666b62";
+      sha256 = "0vyla4lslf1hycx1mvgydhlar2f6bwnwbcp39s1f0m65fqs25rhz";
     };
   };
 
   vim-startify = buildVimPluginFrom2Nix {
-    name = "vim-startify-2018-10-02";
+    name = "vim-startify-2018-10-31";
     src = fetchFromGitHub {
       owner = "mhinz";
       repo = "vim-startify";
-      rev = "556bf1d507dfaddfba4b5795716ea20f8ba902ac";
-      sha256 = "1jjj7iij08455rlc705m3pnbjg87r2l29jclzkiy7nsvjjh3dfwx";
+      rev = "356562270684d8d1647daf0faaf76ac90740990c";
+      sha256 = "0qc9ifq4blixda0kyc0zhmqi6cqz44xnk9x17p0p9qqidf1s1l1r";
     };
   };
 
@@ -3301,12 +3301,12 @@
   };
 
   vimtex = buildVimPluginFrom2Nix {
-    name = "vimtex-2018-10-29";
+    name = "vimtex-2018-11-01";
     src = fetchFromGitHub {
       owner = "lervag";
       repo = "vimtex";
-      rev = "8a32372e4fc3c628d36b8215c6d30bd05eeade28";
-      sha256 = "1h1fp0jnv4wj96mam9dgnr5y1i4a4bdi4law3y1qh937bx7nk2vd";
+      rev = "2aae07e67034f4806d45500a967bf5775ab22baf";
+      sha256 = "1ng1ps5f2vh7xs5lfkid7zwvcjglynw53xvd301zpjbgln2gv3fz";
     };
   };
 

From 965ae0246a2ee176cba658503afe8cd78e01f087 Mon Sep 17 00:00:00 2001
From: adisbladis <adisbladis@gmail.com>
Date: Sun, 4 Nov 2018 14:14:16 +0000
Subject: [PATCH 0472/1129] pulseaudio-modules-bt: unstable-2018-10-16 ->
 unstable-2018-11-01

---
 .../audio/pulseaudio-modules-bt/default.nix       | 10 ++++++----
 .../pulseaudio-modules-bt/fix-install-path.patch  | 15 ++++++++++++---
 2 files changed, 18 insertions(+), 7 deletions(-)

diff --git a/pkgs/applications/audio/pulseaudio-modules-bt/default.nix b/pkgs/applications/audio/pulseaudio-modules-bt/default.nix
index b377db65c0c9..cb267d8bbb66 100644
--- a/pkgs/applications/audio/pulseaudio-modules-bt/default.nix
+++ b/pkgs/applications/audio/pulseaudio-modules-bt/default.nix
@@ -5,6 +5,7 @@
 , pkgconfig
 , ffmpeg_4
 , patchelf
+, fdk_aac
 , libtool
 , cmake
 , bluez
@@ -22,13 +23,13 @@ let
 
 in stdenv.mkDerivation rec {
   name = "pulseaudio-modules-bt-${version}";
-  version = "unstable-2018-10-16";
+  version = "unstable-2018-11-01";
 
   src = fetchFromGitHub {
     owner = "EHfive";
     repo = "pulseaudio-modules-bt";
-    rev = "552c2b48c0cc7dd44d0746b261f7c7d5559e8e30";
-    sha256 = "052jb1hjx1in7bafx4zpn78s7r6f2y7djriwi36dzqy9wmalmyjy";
+    rev = "a2f62fcaa702bb883c07d074ebca8d7135520ab8";
+    sha256 = "1fhg7q9064zikhy0xxldn4fvh49pc47mgikcbd9yhsk66gcn6zj3";
     fetchSubmodules = true;
   };
 
@@ -45,6 +46,7 @@ in stdenv.mkDerivation rec {
   buildInputs = [
     pulseaudio
     ffmpeg_4
+    fdk_aac
     libtool
     bluez
     dbus
@@ -72,7 +74,7 @@ in stdenv.mkDerivation rec {
 
   meta = with stdenv.lib; {
     homepage = https://github.com/EHfive/pulseaudio-modules-bt;
-    description = "SBC, Sony LDAC codec (A2DP Audio) support for Pulseaudio";
+    description = "LDAC, aptX, aptX HD, AAC codecs (A2DP Audio) support for Linux PulseAudio";
     platforms = platforms.linux;
     license = licenses.mit;
     maintainers = with maintainers; [ adisbladis ];
diff --git a/pkgs/applications/audio/pulseaudio-modules-bt/fix-install-path.patch b/pkgs/applications/audio/pulseaudio-modules-bt/fix-install-path.patch
index 2b4ff86ab71b..e500d1fb1333 100644
--- a/pkgs/applications/audio/pulseaudio-modules-bt/fix-install-path.patch
+++ b/pkgs/applications/audio/pulseaudio-modules-bt/fix-install-path.patch
@@ -1,11 +1,20 @@
 diff --git a/CMakeLists.txt b/CMakeLists.txt
-index 0f5baa0..1f35cce 100644
+index d869979..185144d 100644
 --- a/CMakeLists.txt
 +++ b/CMakeLists.txt
-@@ -122,5 +121,4 @@ INSTALL(TARGETS
+@@ -143,13 +143,13 @@ INSTALL(TARGETS
          module-bluez5-device
          module-bluetooth-discover
          module-bluetooth-policy
 -        LIBRARY DESTINATION ${PulseAudio_modlibexecdir})
--
 +        LIBRARY DESTINATION ${CMAKE_INSTALL_PREFIX}/lib/pulse-${PulseAudio_VERSION}/modules/)
+ 
+ if(NOT ${HAVE_SYSTEM_LDAC})
+ 
+ INSTALL(TARGETS
+         ldacBT_enc
+         ldacBT_abr
+-        LIBRARY DESTINATION ${PulseAudio_modlibexecdir})
++        LIBRARY DESTINATION ${CMAKE_INSTALL_PREFIX}/lib/pulse-${PulseAudio_VERSION}/modules/)
+ 
+ endif()

From 4569ee7d74d505f0a9b3fb8754951393e8be7e6f Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Sun, 4 Nov 2018 08:21:07 -0600
Subject: [PATCH 0473/1129] plv8: unbreak build, bump to version 2.3.8

ee58a5b30d6e60407b44fbb02ddade6c20fd8763 broke the plv8 build because it
upgraded the v8_6_x expression everywhere to the 6.9 branch, which came
with API changes. Notably, it seems plv8 only supports up-to v8 6.4.x at
this time.

This keeps a copy of the plv8_6_x expression inside the same directory
as the other v8 versions (so patches, etc are easy to apply), but it is
not exposed to the top-level of all-packages.nix.

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 pkgs/development/libraries/v8/plv8_6_x.nix   | 187 +++++++++++++++++++
 pkgs/servers/sql/postgresql/plv8/default.nix |  12 +-
 pkgs/top-level/all-packages.nix              |   4 +-
 3 files changed, 198 insertions(+), 5 deletions(-)
 create mode 100644 pkgs/development/libraries/v8/plv8_6_x.nix

diff --git a/pkgs/development/libraries/v8/plv8_6_x.nix b/pkgs/development/libraries/v8/plv8_6_x.nix
new file mode 100644
index 000000000000..8d2276def705
--- /dev/null
+++ b/pkgs/development/libraries/v8/plv8_6_x.nix
@@ -0,0 +1,187 @@
+# NOTE: this expression is NOT exported from the top-level of all-packages.nix,
+# it is exclusively used by the 'plv8' PostgreSQL extension, which requires a
+# very exact version.
+
+{ stdenv, lib, fetchgit, fetchFromGitHub, gn, ninja, python, glib, pkgconfig
+, doCheck ? false
+, snapshot ? true
+}:
+
+let
+  arch = if stdenv.isAarch32
+         then if stdenv.is64bit
+              then"arm64"
+              else "arm"
+         else if stdenv.is64bit
+              then"x64"
+              else "ia32";
+  git_url = "https://chromium.googlesource.com";
+
+  # This data is from the DEPS file in the root of a V8 checkout
+  deps = {
+    "base/trace_event/common" = fetchgit {
+      url    = "${git_url}/chromium/src/base/trace_event/common.git";
+      rev    = "0e9a47d74970bee1bbfc063c47215406f8918699";
+      sha256 = "07rbzrlscp8adh4z86yl5jxdnvgkc3xs950xldpk318wf9i3bh6c";
+    };
+    "build" = fetchgit {
+      url    = "${git_url}/chromium/src/build.git";
+      rev    = "9338ce52d0b9bcef34c38285fbd5023b62739fac";
+      sha256 = "1s2sa8dy3waidsirjylc82ggb18l1108bczjc8z0v4ywyj4k0cvh";
+    };
+    "buildtools" = fetchgit {
+      url    = "${git_url}/chromium/buildtools.git";
+      rev    = "505de88083136eefd056e5ee4ca0f01fe9b33de8";
+      sha256 = "0vj216nhb803bggsl0hnyagj8njrm96pn8sim6xcnqb7nhz1vabw";
+    };
+    "test/benchmarks/data" = fetchgit {
+      url    = "${git_url}/v8/deps/third_party/benchmarks.git";
+      rev    = "05d7188267b4560491ff9155c5ee13e207ecd65f";
+      sha256 = "0ad2ay14bn67d61ks4dmzadfnhkj9bw28r4yjdjjyzck7qbnzchl";
+    };
+    "test/mozilla/data" = fetchgit {
+      url    = "${git_url}/v8/deps/third_party/mozilla-tests.git";
+      rev    = "f6c578a10ea707b1a8ab0b88943fe5115ce2b9be";
+      sha256 = "0rfdan76yfawqxbwwb35aa57b723j3z9fx5a2w16nls02yk2kqyn";
+    };
+    "test/test262/data" = fetchgit {
+      url    = "${git_url}/external/github.com/tc39/test262.git";
+      rev    = "5d4c667b271a9b39d0de73aef5ffe6879c6f8811";
+      sha256 = "0q9iwb2nkybf9np95wgf5m372aw2lhx9wlsw41a2a80kbkvb2kqg";
+    };
+    "test/test262/harness" = fetchgit {
+      url    = "${git_url}/external/github.com/test262-utils/test262-harness-py.git";
+      rev    = "0f2acdd882c84cff43b9d60df7574a1901e2cdcd";
+      sha256 = "00brj5avp43yamc92kinba2mg3a2x1rcd7wnm7z093l73idprvkp";
+    };
+    "test/wasm-js" = fetchgit {
+      url    = "${git_url}/external/github.com/WebAssembly/spec.git";
+      rev    = "a7e226a92e660a3d5413cfea4269824f513259d2";
+      sha256 = "0z3aybj3ykajwh2bv5fwd6pwqjjsq8dnwrqc2wncb6r9xcjwbgxp";
+    };
+    "testing/gtest" = fetchgit {
+      url    = "${git_url}/external/github.com/google/googletest.git";
+      rev    = "6f8a66431cb592dad629028a50b3dd418a408c87";
+      sha256 = "0bdba2lr6pg15bla9600zg0r0vm4lnrx0wqz84p376wfdxra24vw";
+    };
+    "third_party/icu" = fetchgit {
+      url    = "${git_url}/chromium/deps/icu.git";
+      rev    = "741688ebf328da9adc52505248bf4e2ef868722c";
+      sha256 = "02ifm18qjlrkn5nm2rxkf9yz9bdlyq7c65jfjndv63vi1drqh1r9";
+    };
+    "third_party/instrumented_libraries" = fetchgit {
+      url    = "${git_url}/chromium/src/third_party/instrumented_libraries.git";
+      rev    = "28417458ac4dc79f68915079d0f283f682504cc0";
+      sha256 = "1qf5c2946n37p843yriv7xawi6ss6samabghq43s49cgd4wq8dc3";
+    };
+    "third_party/jinja2" = fetchgit {
+      url    = "${git_url}/chromium/src/third_party/jinja2.git";
+      rev    = "d34383206fa42d52faa10bb9931d6d538f3a57e0";
+      sha256 = "0d9hyw0bvp3p0dbwy833cm9vdqxcam0qbm9jc561ynphddxlkmgd";
+    };
+    "third_party/markupsafe" = fetchgit {
+      url    = "${git_url}/chromium/src/third_party/markupsafe.git";
+      rev    = "8f45f5cfa0009d2a70589bcda0349b8cb2b72783";
+      sha256 = "168ppjmicfdh4i1l0l25s86mdbrz9fgxmiq1rx33x79mph41scfz";
+    };
+    "tools/clang" = fetchgit {
+      url    = "${git_url}/chromium/src/tools/clang.git";
+      rev    = "8688d267571de76a56746324dcc249bf4232b85a";
+      sha256 = "0krq4zz1vnwp064bm517gwr2napy18wyccdh8w5s4qgkjwwxd63s";
+    };
+    "tools/gyp" = fetchgit {
+      url    = "${git_url}/external/gyp.git";
+      rev    = "d61a9397e668fa9843c4aa7da9e79460fe590bfb";
+      sha256 = "1z081h72mjy285jb1kj5xd0pb4p12n9blvsimsavyn3ldmswv0r0";
+    };
+    "tools/luci-go" = fetchgit {
+      url    = "${git_url}/chromium/src/tools/luci-go.git";
+      rev    = "45a8a51fda92e123619a69e7644d9c64a320b0c1";
+      sha256 = "0r7736gqk7r0i7ig0b5ib10d9q8a8xzsmc0f0fbkm9k78v847vpj";
+    };
+    "tools/swarming_client" = fetchgit {
+      url    = "${git_url}/infra/luci/client-py.git";
+      rev    = "4bd9152f8a975d57c972c071dfb4ddf668e02200";
+      sha256 = "03zk91gzvqv01g1vbl8d7h8al7vs4ymrrdc8ipg9wpq52yh65smh";
+    };
+  };
+
+in
+
+stdenv.mkDerivation rec {
+  name = "v8-${version}";
+  version = "6.4.388.40";
+
+  inherit doCheck;
+
+  src = fetchFromGitHub {
+    owner = "v8";
+    repo = "v8";
+    rev = version;
+    sha256 = "1lq239cgqyidrynz8g3wbdv70ymzv6s0ppad8s219gb3jnizm16a";
+  };
+
+  postUnpack = ''
+    ${lib.concatStringsSep "\n" (
+      lib.mapAttrsToList (n: v: ''
+        mkdir -p $sourceRoot/${n}
+        cp -r ${v}/* $sourceRoot/${n}
+      '') deps)}
+  '';
+
+  prePatch = ''
+    # use our gn, not the bundled one
+    sed -i -e 's#gn_path = .*#gn_path = "${gn}/bin/gn"#' tools/mb/mb.py
+
+    # disable tests
+    if [ "$doCheck" = "" ]; then sed -i -e '/"test:gn_all",/d' BUILD.gn; fi
+
+    # disable sysroot usage
+    chmod u+w build/config build/config/sysroot.gni
+    sed -i build/config/sysroot.gni \
+        -e '/use_sysroot =/ { s#\(use_sysroot =\).*#\1 false#; :a  n; /current_cpu/ { s/^/#/; ba };  }'
+
+    # patch shebangs (/usr/bin/env)
+    patchShebangs tools/dev/v8gen.py
+  '';
+
+  configurePhase = ''
+    tools/dev/v8gen.py -vv ${arch}.release -- \
+        is_component_build=true               \
+        ${if snapshot then "v8_use_external_startup_data=false" else "v8_use_snapshot=false"} \
+        is_clang=false                        \
+        linux_use_bundled_binutils=false      \
+        treat_warnings_as_errors=false        \
+        use_custom_libcxx=false               \
+        use_custom_libcxx_for_host=false
+  '';
+
+  nativeBuildInputs = [ gn ninja pkgconfig ];
+  buildInputs = [ python glib ];
+
+  buildPhase = ''
+    ninja -C out.gn/${arch}.release/
+  '';
+
+  enableParallelBuilding = true;
+
+  installPhase = ''
+    install -vD out.gn/${arch}.release/d8 "$out/bin/d8"
+    install -vD out.gn/${arch}.release/mksnapshot "$out/bin/mksnapshot"
+    mkdir -p "$out/lib"
+    for f in libicui18n.so libicuuc.so libv8_libbase.so libv8_libplatform.so libv8.so; do
+        install -vD out.gn/${arch}.release/$f "$out/lib/$f"
+    done
+    install -vD out.gn/${arch}.release/icudtl.dat "$out/lib/icudtl.dat"
+    mkdir -p "$out/include"
+    cp -vr include/*.h "$out/include"
+    cp -vr include/libplatform "$out/include"
+  '';
+
+  meta = with lib; {
+    description = "Google's open source JavaScript engine";
+    maintainers = with maintainers; [ cstrahan proglodyte ];
+    platforms = platforms.linux;
+    license = licenses.bsd3;
+  };
+}
diff --git a/pkgs/servers/sql/postgresql/plv8/default.nix b/pkgs/servers/sql/postgresql/plv8/default.nix
index 009f65b9d81c..dae3b2fd1af1 100644
--- a/pkgs/servers/sql/postgresql/plv8/default.nix
+++ b/pkgs/servers/sql/postgresql/plv8/default.nix
@@ -2,7 +2,7 @@
 
 stdenv.mkDerivation rec {
   name = "plv8-${version}";
-  version = "2.1.0";
+  version = "2.3.8";
 
   nativeBuildInputs = [ perl ];
   buildInputs = [ v8 postgresql ];
@@ -11,16 +11,20 @@ stdenv.mkDerivation rec {
     owner = "plv8";
     repo = "plv8";
     rev = "v${version}";
-    sha256 = "1sfpxz0zcbinn6822j12lkwgrw9kfacrs83ic968rm489rl9w241";
+    sha256 = "0hrmn1zzzdf52zwldg6axv57p0f3b279l9s8lbpijcv60fqrzx16";
   };
 
+  makeFlags = [ "--makefile=Makefile.shared" ];
+
   preConfigure = ''
-    substituteInPlace Makefile --replace '-lv8_libplatform' '-lv8_libplatform -lv8_libbase'
+    patchShebangs ./generate_upgrade.sh
   '';
 
+  buildPhase = "make -f Makefile.shared all";
+
   installPhase = ''
     mkdir -p $out/bin
-    install -D plv8.so                                         -t $out/lib
+    install -D plv8*.so                                        -t $out/lib
     install -D {plls,plcoffee,plv8}{--${version}.sql,.control} -t $out/share/extension
   '';
 
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 3fb3351f981a..9709ad871041 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -11699,7 +11699,9 @@ with pkgs;
   pgroonga = callPackage ../servers/sql/postgresql/pgroonga {};
 
   plv8 = callPackage ../servers/sql/postgresql/plv8 {
-    v8 = v8_6_x;
+    v8 = callPackage ../development/libraries/v8/plv8_6_x.nix {
+      inherit (python2Packages) python;
+    };
   };
 
   phonon = callPackage ../development/libraries/phonon {};

From 6f3425804c9b41d0450714c4e06cb45879bc1dc7 Mon Sep 17 00:00:00 2001
From: Meghea Iulian <iulian.meghea@gmail.com>
Date: Thu, 1 Nov 2018 11:08:43 +0200
Subject: [PATCH 0474/1129] brightnessctl: fix udev, cleanup & meta update

---
 pkgs/misc/brightnessctl/default.nix | 12 +++++-------
 1 file changed, 5 insertions(+), 7 deletions(-)

diff --git a/pkgs/misc/brightnessctl/default.nix b/pkgs/misc/brightnessctl/default.nix
index f90baee91fcf..6292b8183b28 100644
--- a/pkgs/misc/brightnessctl/default.nix
+++ b/pkgs/misc/brightnessctl/default.nix
@@ -11,20 +11,18 @@ stdenv.mkDerivation rec {
     sha256 = "1n1gb8ldgqv3vs565yhk1w4jfvrviczp94r8wqlkv5q6ab43c8w9";
   };
 
-  makeFlags = [ "MODE=0755" "PREFIX=" "DESTDIR=$(out)" ];
-  installTargets = [ "install" "install_udev_rules" ];
+  makeFlags = [ "PREFIX=" "DESTDIR=$(out)" ];
 
   postPatch = ''
     substituteInPlace 90-brightnessctl.rules --replace /bin/ ${coreutils}/bin/
-    substituteInPlace 90-brightnessctl.rules --replace %k '*'
   '';
 
-  meta = {
+  meta = with stdenv.lib; {
     homepage = "https://github.com/Hummer12007/brightnessctl";
-    maintainers = [ stdenv.lib.maintainers.Dje4321 ];
-    license = stdenv.lib.licenses.mit;
     description = "This program allows you read and control device brightness";
-    platforms = stdenv.lib.platforms.linux;
+    license = licenses.mit;
+    maintainers = with maintainers; [ megheaiulian ];
+    platforms = platforms.linux;
   };
 
 }

From 354379d6ffb5276d1d49301b408b8a6ce386af5c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Niklas=20Th=C3=B6rne?= <notrupertthorne@gmail.com>
Date: Sun, 4 Nov 2018 15:33:32 +0100
Subject: [PATCH 0475/1129] git-big-picture: 0.9.0 -> 0.10.1

https://github.com/esc/git-big-picture/blob/master/README.rst#Changelog
---
 .../git-and-tools/git-big-picture/default.nix               | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/version-management/git-and-tools/git-big-picture/default.nix b/pkgs/applications/version-management/git-and-tools/git-big-picture/default.nix
index 6918f048eae3..7a47ed9a992d 100644
--- a/pkgs/applications/version-management/git-and-tools/git-big-picture/default.nix
+++ b/pkgs/applications/version-management/git-and-tools/git-big-picture/default.nix
@@ -2,7 +2,7 @@
 
 python2Packages.buildPythonApplication rec {
   pname = "git-big-picture";
-  version = "0.9.0";
+  version = "0.10.1";
 
   name = "${pname}-${version}";
 
@@ -10,7 +10,7 @@ python2Packages.buildPythonApplication rec {
     owner = "esc";
     repo = pname;
     rev = "v${version}";
-    sha256 = "1h283gzs4nx8lrarmr454zza52cilmnbdrqn1n33v3cn1rayl3c9";
+    sha256 = "0b0zdq7d7k7f6p3wwc799347fraphbr20rxd1ysnc4xi1cj4wpmi";
   };
 
   buildInputs = [ git graphviz ];
@@ -21,7 +21,7 @@ python2Packages.buildPythonApplication rec {
     '';
 
   meta = {
-    description = "Tool for visualization of Git repositories.";
+    description = "Tool for visualization of Git repositories";
     homepage = https://github.com/esc/git-big-picture;
     license = stdenv.lib.licenses.gpl3;
     platforms = stdenv.lib.platforms.linux;

From bb860565750483d9da007fbfe8310c162764c735 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?L=C3=A9o=20Gaspard?= <leo@gaspard.io>
Date: Fri, 2 Nov 2018 01:48:40 +0900
Subject: [PATCH 0476/1129] matrix-synapse: 0.33.6 -> 0.33.8

Also reworked dependencies:
 * blist and ujson are marked as no longer needed
 * pytz has no mention throughout `git log -p` on synapse's repository
 * systemd and affinity are optional (but turned on by default)
---
 pkgs/servers/matrix-synapse/default.nix | 51 +++++++++++++++++++------
 1 file changed, 39 insertions(+), 12 deletions(-)

diff --git a/pkgs/servers/matrix-synapse/default.nix b/pkgs/servers/matrix-synapse/default.nix
index dab58d2edd6b..e0c666b002a9 100644
--- a/pkgs/servers/matrix-synapse/default.nix
+++ b/pkgs/servers/matrix-synapse/default.nix
@@ -1,4 +1,6 @@
-{ stdenv, python2Packages, fetchurl, fetchFromGitHub }:
+{ lib, stdenv, python2Packages, fetchurl, fetchFromGitHub
+, enableSystemd ? true
+}:
 let
   matrix-angular-sdk = python2Packages.buildPythonPackage rec {
     name = "matrix-angular-sdk-${version}";
@@ -26,13 +28,13 @@ let
   };
 in python2Packages.buildPythonApplication rec {
   name = "matrix-synapse-${version}";
-  version = "0.33.6";
+  version = "0.33.8";
 
   src = fetchFromGitHub {
     owner = "matrix-org";
     repo = "synapse";
     rev = "v${version}";
-    sha256 = "0c1dr09f1msv6xvpmdlncx7yyj6qxnpihd93lqckd115fds12g5h";
+    sha256 = "122ba09xkc1x35qaajcynkjikg342259rgy81m8abz0l8mcg4mkm";
   };
 
   patches = [
@@ -40,16 +42,41 @@ in python2Packages.buildPythonApplication rec {
   ];
 
   propagatedBuildInputs = with python2Packages; [
-    blist canonicaljson daemonize dateutil frozendict pillow pyasn1
-    pydenticon pymacaroons-pynacl pynacl pyopenssl pysaml2 pytz requests
-    signedjson systemd twisted ujson unpaddedbase64 pyyaml prometheus_client
-    matrix-angular-sdk bleach netaddr jinja2 psycopg2
-    psutil msgpack-python lxml matrix-synapse-ldap3
-    phonenumbers jsonschema affinity bcrypt sortedcontainers treq
-  ];
+    bcrypt
+    bleach
+    canonicaljson
+    daemonize
+    dateutil
+    frozendict
+    jinja2
+    jsonschema
+    lxml
+    matrix-angular-sdk
+    matrix-synapse-ldap3
+    msgpack-python
+    netaddr
+    phonenumbers
+    pillow
+    prometheus_client
+    psutil
+    psycopg2
+    pyasn1
+    pydenticon
+    pymacaroons-pynacl
+    pynacl
+    pyopenssl
+    pysaml2
+    pyyaml
+    requests
+    signedjson
+    sortedcontainers
+    treq
+    twisted
+    unpaddedbase64
+  ] ++ lib.optional enableSystemd systemd;
 
-  # Checks fail because of Tox.
-  doCheck = false;
+  doCheck = true;
+  checkPhase = "python -m twisted.trial test";
 
   buildInputs = with python2Packages; [
     mock setuptoolsTrial

From fc84be03be74bac998f0413f62236830ff800453 Mon Sep 17 00:00:00 2001
From: Frank Doepper <github@woffs.de>
Date: Sun, 4 Nov 2018 15:45:44 +0100
Subject: [PATCH 0477/1129] phototonic: 1.7.1 -> 2.1

---
 pkgs/applications/graphics/phototonic/default.nix | 8 +++-----
 1 file changed, 3 insertions(+), 5 deletions(-)

diff --git a/pkgs/applications/graphics/phototonic/default.nix b/pkgs/applications/graphics/phototonic/default.nix
index ce300eaf9f6d..7da1d4b612f9 100644
--- a/pkgs/applications/graphics/phototonic/default.nix
+++ b/pkgs/applications/graphics/phototonic/default.nix
@@ -2,15 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "phototonic-${version}";
-  version = "1.7.1";
+  version = "2.1";
 
   src = fetchFromGitHub {
     repo = "phototonic";
     owner = "oferkv";
-    # There is currently no tag for 1.7.1 see
-    # https://github.com/oferkv/phototonic/issues/214
-    rev = "c37070e4a068570d34ece8de1e48aa0882c80c5b";
-    sha256 = "1agd3bsrpljd019qrjvlbim5l0bhpx53dhpc0gvyn0wmcdzn92gj";
+    rev = "v${version}";
+    sha256 = "0csidmxl1sfmn6gq81vn9f9jckb4swz3sgngnwqa4f75lr6604h7";
   };
 
   buildInputs = [ qtbase exiv2 ];

From 34bf218b16da946e15f5f5e8ea2e7c6044ed7bf7 Mon Sep 17 00:00:00 2001
From: Profpatsch <mail@profpatsch.de>
Date: Thu, 25 Oct 2018 21:10:03 +0200
Subject: [PATCH 0478/1129] Add dhallPackages and add current Prelude

Dhall is a non-turing complete programming language.
---
 .github/CODEOWNERS                            |  4 +++
 pkgs/development/dhall-modules/default.nix    |  9 +++++++
 pkgs/development/dhall-modules/prelude/v3.nix | 25 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 4 files changed, 40 insertions(+)
 create mode 100644 pkgs/development/dhall-modules/default.nix
 create mode 100644 pkgs/development/dhall-modules/prelude/v3.nix

diff --git a/.github/CODEOWNERS b/.github/CODEOWNERS
index e819d451fd55..17b830e5fad0 100644
--- a/.github/CODEOWNERS
+++ b/.github/CODEOWNERS
@@ -113,3 +113,7 @@
 /nixos/modules/services/databases/postgresql.xml @thoughtpolice
 /nixos/modules/services/databases/postgresql.nix @thoughtpolice
 /nixos/tests/postgresql.nix @thoughtpolice
+
+# Dhall
+/pkgs/development/dhall-modules      @Gabriel439 @Profpatsch
+/pkgs/development/interpreters/dhall @Gabriel439 @Profpatsch
diff --git a/pkgs/development/dhall-modules/default.nix b/pkgs/development/dhall-modules/default.nix
new file mode 100644
index 000000000000..b6632a86f31f
--- /dev/null
+++ b/pkgs/development/dhall-modules/default.nix
@@ -0,0 +1,9 @@
+{ pkgs }:
+
+# TODO: add into the toplevel fixpoint instead of using rec
+rec {
+
+  prelude = prelude_3_0_0;
+  prelude_3_0_0 = pkgs.callPackage ./prelude/v3.nix {};
+
+}
diff --git a/pkgs/development/dhall-modules/prelude/v3.nix b/pkgs/development/dhall-modules/prelude/v3.nix
new file mode 100644
index 000000000000..ef673310ceb0
--- /dev/null
+++ b/pkgs/development/dhall-modules/prelude/v3.nix
@@ -0,0 +1,25 @@
+{ stdenv, lib, fetchFromGitHub }:
+
+stdenv.mkDerivation {
+  name = "dhall-prelude";
+
+  src = fetchFromGitHub {
+    owner = "dhall-lang";
+    repo = "dhall-lang";
+    # Commit where the v3.0.0 prelude folder was merged into dhall-lang
+    # and a LICENSE file has been added.
+    rev = "f6aa9399f1ac831d66c34104abe6856023c5b2df";
+    sha256 = "0kqjgh3y1l3cb3rj381j7c09547g1vh2dsfzpm08y1qajhhf9vgf";
+  };
+
+  phases = [ "unpackPhase" "installPhase" ];
+
+  installPhase = ''
+    cp -r Prelude $out
+  '';
+
+  meta = {
+    license = lib.licenses.bsd3;
+    maintainers = with lib.maintainers; [ Profpatsch ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 9709ad871041..75bd3c191c4e 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -7549,6 +7549,8 @@ with pkgs;
 
   dhall-text = haskell.lib.justStaticExecutables haskellPackages.dhall-text;
 
+  dhallPackages = import ../development/dhall-modules { inherit pkgs; };
+
   duktape = callPackage ../development/interpreters/duktape { };
 
   beam = callPackage ./beam-packages.nix { };

From 0ff9a7a2cd58bb306c7bb7fb97ddedac8702dcb9 Mon Sep 17 00:00:00 2001
From: Falco Peijnenburg <fpeijnenburg@gmail.com>
Date: Sun, 4 Nov 2018 17:03:35 +0100
Subject: [PATCH 0479/1129] haskellPackages.*.env: Fixed shellHook being
 ignored

The problem was introduced in 2bafa93b75464eee5744653319d8046e05cf141a
---
 pkgs/development/haskell-modules/generic-builder.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/development/haskell-modules/generic-builder.nix b/pkgs/development/haskell-modules/generic-builder.nix
index 8f230c92aaa1..a0bf655a67b7 100644
--- a/pkgs/development/haskell-modules/generic-builder.nix
+++ b/pkgs/development/haskell-modules/generic-builder.nix
@@ -443,6 +443,7 @@ stdenv.mkDerivation ({
 
     env = shellFor {
       packages = p: [ drv ];
+      inherit shellHook;
     };
 
   };

From a7b471a31c85218e5e27577e198ea0c1193d984e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Andr=C3=A9-Patrick=20Bubel?= <code@andre-bubel.de>
Date: Sun, 4 Nov 2018 17:12:28 +0100
Subject: [PATCH 0480/1129] i3: 4.15 -> 4.16

---
 pkgs/applications/window-managers/i3/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/window-managers/i3/default.nix b/pkgs/applications/window-managers/i3/default.nix
index 5c95b9daf251..2e18636c621b 100644
--- a/pkgs/applications/window-managers/i3/default.nix
+++ b/pkgs/applications/window-managers/i3/default.nix
@@ -5,11 +5,11 @@
 
 stdenv.mkDerivation rec {
   name = "i3-${version}";
-  version = "4.15";
+  version = "4.16";
 
   src = fetchurl {
     url = "https://i3wm.org/downloads/${name}.tar.bz2";
-    sha256 = "09jk70hsdxab24lqvj2f30ijrkbv3f6q9xi5dcsax1dw3x6m4z91";
+    sha256 = "1d2mnryn7m9c6d69awd7lwzadliapd0ahi5n8d0ppqy533ssaq6c";
   };
 
   nativeBuildInputs = [ which pkgconfig makeWrapper ];

From df8817087ef2ad53dd1df3b0dbcf036c4c07e15a Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Sat, 3 Nov 2018 22:18:08 -0400
Subject: [PATCH 0481/1129] graalvm: 1.0.0-rc3 -> 1.0.0-rc8

---
 pkgs/development/compilers/graalvm/default.nix | 18 +++++++++++-------
 1 file changed, 11 insertions(+), 7 deletions(-)

diff --git a/pkgs/development/compilers/graalvm/default.nix b/pkgs/development/compilers/graalvm/default.nix
index 7721ce06a561..349c2ead3ad5 100644
--- a/pkgs/development/compilers/graalvm/default.nix
+++ b/pkgs/development/compilers/graalvm/default.nix
@@ -11,6 +11,7 @@ let
                                   install -D ${fetchurl { inherit url sha1; }} $out/${name}
                                   echo -n ${sha1} > $out/${name}.sha1
                                 '') list}
+        find $out -exec touch -c -m -r '{}' --date="1980-01-01" '{}' \;
       '';
     };
 
@@ -61,13 +62,13 @@ let
 in rec {
 
   mx = stdenv.mkDerivation rec {
-    version = "5.176.4";
+    version = "5.192.0";
     name = "mx";
     src = fetchFromGitHub {
       owner  = "graalvm";
       repo   = "mx";
       rev    = version;
-      sha256 = "0xmx4hpnd6m9hk49lgwnvwd0q11s2m4d8axwq7zzc8wm10d692xw";
+      sha256 = "04gdf1gzlc8a6li8lcnrs2j9zicj11fs1vqqf7cmhb4pm2h72hml";
     };
     nativeBuildInputs = [ makeWrapper ];
     buildPhase = ''
@@ -86,6 +87,7 @@ in rec {
       wrapProgram $out/bin/mx \
         --prefix PATH : ${lib.makeBinPath [ python27 mercurial ]} \
         --set    FINDBUGS_HOME ${findbugs}
+      find $out -exec touch -c -m -r '{}' --date="1980-01-01" '{}' \;
     '';
     meta = with stdenv.lib; {
       homepage = https://github.com/graalvm/mx;
@@ -97,9 +99,9 @@ in rec {
 
   # copy of pkgs.oraclejvm8 with JVMCI interface (TODO: it should work with pkgs.openjdk8 too)
   jvmci8 = stdenv.mkDerivation rec {
-    version = "0.45";
+    version = "0.49";
     name = let
-             n = "jvmci8u171-${version}";
+             n = "jvmci8u191-${version}";
            in if (lib.stringLength n) == (lib.stringLength oraclejdk8.name) then
                 n
               else
@@ -108,7 +110,7 @@ in rec {
       owner  = "graalvm";
       repo   = "graal-jvmci-8";
       rev    = "jvmci-${version}";
-      sha256 = "1nppk9dpamisiadss1iy82i3rf6igndbf1vax85w9lz310kh0d12";
+      sha256 = "1zgin0w1qa7wmfhcisx470fhnmddfxxp5nyyix31yaa7dznql82k";
     };
     buildInputs = [ mx mercurial ];
     postUnpack = ''
@@ -132,6 +134,7 @@ in rec {
 
       export MX_ALT_OUTPUT_ROOT=$NIX_BUILD_TOP/mxbuild
       export MX_CACHE_DIR=${makeMxCache jvmci8-mxcache}
+      find $NIX_BUILD_TOP -exec touch -c -m -r '{}' --date="1980-01-01" '{}' \;
       mx --java-home $(pwd)/writable-copy-of-jdk build
     '';
     installPhase = ''
@@ -146,7 +149,7 @@ in rec {
   };
 
   graalvm8 = stdenv.mkDerivation rec {
-    version = "1.0.0-rc3";
+    version = "1.0.0-rc8";
     name = let
              n = "graal-${version}";
            in if (lib.stringLength n) == (lib.stringLength jvmci8.name) then
@@ -157,7 +160,7 @@ in rec {
       owner  = "oracle";
       repo   = "graal";
       rev    = "vm-${version}";
-      sha256 = "1hcs4m6ailapgi3bikav1i517vqn5pn595cyqqjfvlnkjwihbnc3";
+      sha256 = "1fada4awrr8bhw294xdiq4bagvgrlcr44mw6338gaal0ky3vkm0p";
     };
     buildInputs = [ mx zlib mercurial jvmci8 ];
     postUnpack = ''
@@ -178,6 +181,7 @@ in rec {
 
       export MX_ALT_OUTPUT_ROOT=$NIX_BUILD_TOP/mxbuild
       export MX_CACHE_DIR=${makeMxCache graal-mxcache}
+
       ( cd substratevm
 
         mkdir -p clibraries

From 7bd773832c93d3fae33676d8567eb295d547465e Mon Sep 17 00:00:00 2001
From: volth <volth@webmaster.ms>
Date: Sun, 4 Nov 2018 03:27:58 +0000
Subject: [PATCH 0482/1129] graalvm 1.0.0-rc8 fixes

---
 .../development/compilers/graalvm/default.nix | 29 +++++++++++++------
 1 file changed, 20 insertions(+), 9 deletions(-)

diff --git a/pkgs/development/compilers/graalvm/default.nix b/pkgs/development/compilers/graalvm/default.nix
index 349c2ead3ad5..37c23e81b426 100644
--- a/pkgs/development/compilers/graalvm/default.nix
+++ b/pkgs/development/compilers/graalvm/default.nix
@@ -11,7 +11,6 @@ let
                                   install -D ${fetchurl { inherit url sha1; }} $out/${name}
                                   echo -n ${sha1} > $out/${name}.sha1
                                 '') list}
-        find $out -exec touch -c -m -r '{}' --date="1980-01-01" '{}' \;
       '';
     };
 
@@ -51,6 +50,9 @@ let
     rec { sha1 = "280c265b789e041c02e5c97815793dfc283fb1e6"; name = "LIBFFI_${sha1}/libffi.tar.gz";                                                    url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/libffi-3.2.1.tar.gz; }
     rec { sha1 = "8819cea8bfe22c9c63f55465e296b3855ea41786"; name = "TruffleJSON_${sha1}/trufflejson.jar";                                             url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/trufflejson-20180130.jar; }
     rec { sha1 = "9712a8124c40298015f04a74f61b3d81a51513af"; name = "CHECKSTYLE_8.8_${sha1}/checkstyle-8.8.jar";                                       url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/checkstyle-8.8-all.jar; }
+    rec { sha1 = "a828a4f32caf9ac0b74f2548f87310959558c526"; name = "VISUALVM_COMMON_${sha1}/visualvm-common.tar.gz";                                  url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/visualvm-612.tar.gz; }
+    rec { sha1 = "7ac829f0c9a37f5cc39afd2265588a365480720d"; name = "VISUALVM_PLATFORM_SPECIFIC_${sha1}/visualvm-platform-specific.tar.gz";            url = https://lafo.ssw.uni-linz.ac.at/pub/graal-external-deps/visualvm-612-linux-amd64.tar.gz; }
+    rec { sha1 = "e6e60889b7211a80b21052a249bd7e0f88f79fee"; name = "Java-WebSocket_${sha1}/java-websocket.jar";                                       url = mirror://maven/org/java-websocket/Java-WebSocket/1.3.9/Java-WebSocket-1.3.9.jar; }
   ];
 
   findbugs = fetchzip {
@@ -80,6 +82,11 @@ in rec {
         'def download(path, urls, verbose=False, abortOnError=True, verifyOnly=False):
           print("FAKE download(path={} urls={} verbose={} abortOnError={} verifyOnly={})".format(path, urls, verbose, abortOnError, verifyOnly))
           return True'
+
+      # avoid crash with 'ValueError: ZIP does not support timestamps before 1980'
+      substituteInPlace mx.py --replace \
+        'zipfile.ZipInfo(arcname, time.localtime(os.path.getmtime(join(root, f)))[:6])' \
+        'zipfile.ZipInfo(arcname, time.strptime ("1 Jan 1980", "%d %b %Y"       )[:6])'
     '';
     installPhase = ''
       mkdir -p $out/bin
@@ -87,7 +94,6 @@ in rec {
       wrapProgram $out/bin/mx \
         --prefix PATH : ${lib.makeBinPath [ python27 mercurial ]} \
         --set    FINDBUGS_HOME ${findbugs}
-      find $out -exec touch -c -m -r '{}' --date="1980-01-01" '{}' \;
     '';
     meta = with stdenv.lib; {
       homepage = https://github.com/graalvm/mx;
@@ -101,7 +107,7 @@ in rec {
   jvmci8 = stdenv.mkDerivation rec {
     version = "0.49";
     name = let
-             n = "jvmci8u191-${version}";
+             n = "jvmci${/*"8u191"*/ lib.removePrefix "oraclejdk-" oraclejdk8.name}-${version}";
            in if (lib.stringLength n) == (lib.stringLength oraclejdk8.name) then
                 n
               else
@@ -134,7 +140,6 @@ in rec {
 
       export MX_ALT_OUTPUT_ROOT=$NIX_BUILD_TOP/mxbuild
       export MX_CACHE_DIR=${makeMxCache jvmci8-mxcache}
-      find $NIX_BUILD_TOP -exec touch -c -m -r '{}' --date="1980-01-01" '{}' \;
       mx --java-home $(pwd)/writable-copy-of-jdk build
     '';
     installPhase = ''
@@ -173,6 +178,12 @@ in rec {
         hg checkout ${lib.escapeShellArg src.rev}
       )
     '';
+    postPatch = ''
+      substituteInPlace substratevm/src/com.oracle.svm.core.posix/src/com/oracle/svm/core/posix/headers/PosixDirectives.java \
+        --replace '<zlib.h>' '<${zlib.dev}/include/zlib.h>'
+      substituteInPlace substratevm/src/com.oracle.svm.hosted/src/com/oracle/svm/hosted/image/CCLinkerInvocation.java \
+        --replace 'cmd.add("-v");' 'cmd.add("-v"); cmd.add("-L${zlib}/lib");'
+    '';
     buildPhase = ''
       # make a copy of jvmci8
       cp -dpR ${jvmci8} $out
@@ -188,7 +199,7 @@ in rec {
         mx --java-home $out build
 
         # bootstrap native-image (that was removed from mx build in https://github.com/oracle/graal/commit/140d7a7edf54ec5872a8ff45869cd1ae499efde4)
-        mx --java-home $out native-image -cp $MX_ALT_OUTPUT_ROOT/substratevm/dists/svm-driver.jar com.oracle.svm.driver.NativeImage
+        mx --java-home $out native-image -cp $MX_ALT_OUTPUT_ROOT/substratevm/dists/jdk1.8/svm-driver.jar com.oracle.svm.driver.NativeImage
       )
       ( cd tools
         mx --java-home $out build
@@ -199,17 +210,17 @@ in rec {
       mkdir -p $out/jre/tools/{profiler,chromeinspector,truffle/builder} $out/jre/lib/{graal,include,truffle/include}
       cp -vpLR substratevm/svmbuild/native-image-root/lib/*                         $out/jre/lib/           || true # ignore "same file" error when dereferencing symlinks
       cp -vp   $MX_ALT_OUTPUT_ROOT/truffle/linux-amd64/truffle-nfi-native/bin/*     $out/jre/lib/amd64/
-      cp -vp   $MX_ALT_OUTPUT_ROOT/compiler/dists/graal-*processor*.jar             $out/jre/lib/graal/
+      cp -vp   $MX_ALT_OUTPUT_ROOT/compiler/dists/jdk1.8/graal-*processor*.jar      $out/jre/lib/graal/
       cp -vp   $MX_ALT_OUTPUT_ROOT/truffle/linux-amd64/truffle-nfi-native/include/* $out/jre/lib/include/
-      cp -vp   $MX_ALT_OUTPUT_ROOT/compiler/dists/graal-management.jar              $out/jre/lib/jvmci/
+      cp -vp   $MX_ALT_OUTPUT_ROOT/compiler/dists/jdk1.8/graal-management.jar       $out/jre/lib/jvmci/
       cp -vdpR $out/jre/lib/svm/clibraries                                          $out/jre/lib/svm/builder/
-      cp -vpR  $MX_ALT_OUTPUT_ROOT/truffle/dists/*                                  $out/jre/lib/truffle/
+      cp -vpR  $MX_ALT_OUTPUT_ROOT/truffle/dists/jdk1.8/*                           $out/jre/lib/truffle/
       cp -vp   $MX_ALT_OUTPUT_ROOT/truffle/linux-amd64/truffle-nfi-native/include/* $out/jre/lib/truffle/include/
       cp -vpLR substratevm/svmbuild/native-image-root/tools/*                       $out/jre/tools/
       cp -vpR  $MX_ALT_OUTPUT_ROOT/tools/dists/chromeinspector*                     $out/jre/tools/chromeinspector/
       cp -vpR  $MX_ALT_OUTPUT_ROOT/tools/dists/truffle-profiler*                    $out/jre/tools/profiler/
       cp -vpR  $MX_ALT_OUTPUT_ROOT/truffle/linux-amd64/truffle-nfi-native/*         $out/jre/tools/truffle/
-      cp -vp   $MX_ALT_OUTPUT_ROOT/truffle/dists/truffle-nfi.jar                    $out/jre/tools/truffle/builder/
+      cp -vp   $MX_ALT_OUTPUT_ROOT/truffle/dists/jdk1.8/truffle-nfi.jar             $out/jre/tools/truffle/builder/
 
       echo "name=GraalVM ${version}"                                              > $out/jre/lib/amd64/server/vm.properties
       echo -n "graal"                                                             > $out/jre/lib/jvmci/compiler-name

From 23deb67b7c0862521382e9814d304c434495c0e1 Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Sun, 4 Nov 2018 11:23:51 -0500
Subject: [PATCH 0483/1129] graalvm: More fixes

---
 pkgs/development/compilers/graalvm/default.nix | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/pkgs/development/compilers/graalvm/default.nix b/pkgs/development/compilers/graalvm/default.nix
index 37c23e81b426..a35143b43496 100644
--- a/pkgs/development/compilers/graalvm/default.nix
+++ b/pkgs/development/compilers/graalvm/default.nix
@@ -183,6 +183,11 @@ in rec {
         --replace '<zlib.h>' '<${zlib.dev}/include/zlib.h>'
       substituteInPlace substratevm/src/com.oracle.svm.hosted/src/com/oracle/svm/hosted/image/CCLinkerInvocation.java \
         --replace 'cmd.add("-v");' 'cmd.add("-v"); cmd.add("-L${zlib}/lib");'
+      substituteInPlace substratevm/src/com.oracle.svm.hosted/src/com/oracle/svm/hosted/c/codegen/CCompilerInvoker.java \
+        --replace 'command.add(Platform.includedIn(Platform.WINDOWS.class) ? "CL" : "gcc");' \
+          'command.add(Platform.includedIn(Platform.WINDOWS.class) ? "CL" : "${stdenv.cc}/bin/gcc");'
+      substituteInPlace substratevm/src/com.oracle.svm.hosted/src/com/oracle/svm/hosted/image/CCLinkerInvocation.java \
+        --replace 'protected String compilerCommand = "cc";' 'protected String compilerCommand = "${stdenv.cc}/bin/cc";'
     '';
     buildPhase = ''
       # make a copy of jvmci8

From 26f3e8a3678e4e07f2384350472e8b8fe3a7441c Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Sun, 4 Nov 2018 11:36:24 -0500
Subject: [PATCH 0484/1129] linux: 4.14.78 -> 4.14.79

---
 pkgs/os-specific/linux/kernel/linux-4.14.nix | 4 ++--
 pkgs/top-level/all-packages.nix              | 5 -----
 2 files changed, 2 insertions(+), 7 deletions(-)

diff --git a/pkgs/os-specific/linux/kernel/linux-4.14.nix b/pkgs/os-specific/linux/kernel/linux-4.14.nix
index f4a728c9d25f..a5170edfa261 100644
--- a/pkgs/os-specific/linux/kernel/linux-4.14.nix
+++ b/pkgs/os-specific/linux/kernel/linux-4.14.nix
@@ -3,7 +3,7 @@
 with stdenv.lib;
 
 buildLinux (args // rec {
-  version = "4.14.78";
+  version = "4.14.79";
 
   # modDirVersion needs to be x.y.z, will automatically add .0 if needed
   modDirVersion = if (modDirVersionArg == null) then concatStrings (intersperse "." (take 3 (splitString "." "${version}.0"))) else modDirVersionArg;
@@ -13,6 +13,6 @@ buildLinux (args // rec {
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz";
-    sha256 = "0v2cwykgd2hxlqja4yl4pq45nhd5x8917ixqq7hj1r3ry304vnpl";
+    sha256 = "0flkkgfjzs6z7hkr15lga8jvxgwn6wi885yf5wyr0zxjrqg0f6an";
   };
 } // (args.argsOverride or {}))
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 75bd3c191c4e..3a3f1b301471 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -14278,11 +14278,6 @@ with pkgs;
         # when adding a new linux version
         kernelPatches.cpu-cgroup-v2."4.11"
         kernelPatches.modinst_arg_list_too_long
-        # https://github.com/NixOS/nixpkgs/issues/42755
-        # Remove these xen-netfront patches once they're included in
-        # upstream! Fixes https://github.com/NixOS/nixpkgs/issues/42755
-        kernelPatches.xen-netfront_fix_mismatched_rtnl_unlock
-        kernelPatches.xen-netfront_update_features_after_registering_netdev
       ];
   };
 

From 260aa8089df6d18f099524292b52ef075fcfd031 Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Sun, 4 Nov 2018 11:36:37 -0500
Subject: [PATCH 0485/1129] linux: 4.18.16 -> 4.18.17

---
 pkgs/os-specific/linux/kernel/linux-4.18.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/kernel/linux-4.18.nix b/pkgs/os-specific/linux/kernel/linux-4.18.nix
index d6c4b58b980a..add98cfb2faa 100644
--- a/pkgs/os-specific/linux/kernel/linux-4.18.nix
+++ b/pkgs/os-specific/linux/kernel/linux-4.18.nix
@@ -3,7 +3,7 @@
 with stdenv.lib;
 
 buildLinux (args // rec {
-  version = "4.18.16";
+  version = "4.18.17";
 
   # modDirVersion needs to be x.y.z, will automatically add .0 if needed
   modDirVersion = if (modDirVersionArg == null) then concatStrings (intersperse "." (take 3 (splitString "." "${version}.0"))) else modDirVersionArg;
@@ -13,6 +13,6 @@ buildLinux (args // rec {
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz";
-    sha256 = "1rjjkhl8lz4y4sn7icy8mp6p1x7rvapybp51p92sanbjy3i19fmy";
+    sha256 = "0353ns09i5y0fcygvly20z0qrp6gcqd453186ihm4r7ajgh43bz2";
   };
 } // (args.argsOverride or {}))

From 3e1ca4f1761bb401d54b1fbcfa698a31512e130a Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Sun, 4 Nov 2018 11:36:54 -0500
Subject: [PATCH 0486/1129] linux: 4.19 -> 4.19.1

---
 pkgs/os-specific/linux/kernel/linux-4.19.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/kernel/linux-4.19.nix b/pkgs/os-specific/linux/kernel/linux-4.19.nix
index 5aa033348d4e..d597818dab68 100644
--- a/pkgs/os-specific/linux/kernel/linux-4.19.nix
+++ b/pkgs/os-specific/linux/kernel/linux-4.19.nix
@@ -3,7 +3,7 @@
 with stdenv.lib;
 
 buildLinux (args // rec {
-  version = "4.19";
+  version = "4.19.1";
 
   # modDirVersion needs to be x.y.z, will automatically add .0 if needed
   modDirVersion = if (modDirVersionArg == null) then concatStrings (intersperse "." (take 3 (splitString "." "${version}.0"))) else modDirVersionArg;
@@ -13,6 +13,6 @@ buildLinux (args // rec {
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz";
-    sha256 = "18a92z17alh5kkvjv7l9z8wk5jgdb6raawdfkpwx9bi8amjzas0c";
+    sha256 = "0ac8w310p83z11ksmyad7by7cmacwg4vq68pzxchc88bbk33gmk4";
   };
 } // (args.argsOverride or {}))

From ef9b17b48475f8d75e8a5d90ee3a30b1d461fdd2 Mon Sep 17 00:00:00 2001
From: Philipp Middendorf <pmidden+github@secure.mailbox.org>
Date: Sun, 4 Nov 2018 18:32:33 +0100
Subject: [PATCH 0487/1129] pythonPackages.imageio: 1.6 -> 2.4.1 (#49147)

---
 .../python-modules/imageio/default.nix        | 32 +++++++++++++------
 .../python-modules/moviepy/default.nix        |  1 +
 2 files changed, 24 insertions(+), 9 deletions(-)

diff --git a/pkgs/development/python-modules/imageio/default.nix b/pkgs/development/python-modules/imageio/default.nix
index cdbcfee7180f..de8380280670 100644
--- a/pkgs/development/python-modules/imageio/default.nix
+++ b/pkgs/development/python-modules/imageio/default.nix
@@ -1,28 +1,42 @@
 { stdenv
 , buildPythonPackage
-, fetchurl
+, fetchPypi
+, pillow
+, psutil
 , pytest
 , numpy
+, isPy3k
+, futures
+, enum34
 }:
 
 buildPythonPackage rec {
   pname = "imageio";
-  version = "1.6";
+  version = "2.4.1";
 
-  src = fetchurl {
-    url = "https://github.com/imageio/imageio/archive/v${version}.tar.gz";
-    sha256 = "195snkk3fsbjqd5g1cfsd9alzs5q45gdbi2ka9ph4yxqb31ijrbv";
+  src = fetchPypi {
+    sha256 = "0jjiwf6wjipmykh33prjh448qv8mpgngfi77ndc7mym5r1xhgf0n";
+    inherit pname version;
   };
 
-  buildInputs = [ pytest ];
-  propagatedBuildInputs = [ numpy ];
+  checkInputs = [ pytest psutil ];
+  propagatedBuildInputs = [ numpy pillow ] ++ stdenv.lib.optionals (!isPy3k) [
+    futures
+    enum34
+  ];
 
   checkPhase = ''
+    export IMAGEIO_USERDIR="$TMP"
+    export IMAGEIO_NO_INTERNET="true"
+    export HOME="$(mktemp -d)"
     py.test
   '';
 
-  # Tries to write in /var/tmp/.imageio
-  doCheck = false;
+  # For some reason, importing imageio also imports xml on Nix, see
+  # https://github.com/imageio/imageio/issues/395
+  postPatch = ''
+    substituteInPlace tests/test_meta.py --replace '"urllib",' "\"urllib\",\"xml\""
+  '';
 
   meta = with stdenv.lib; {
     description = "Library for reading and writing a wide range of image, video, scientific, and volumetric data formats";
diff --git a/pkgs/development/python-modules/moviepy/default.nix b/pkgs/development/python-modules/moviepy/default.nix
index 63613b516868..637c014cb1ab 100644
--- a/pkgs/development/python-modules/moviepy/default.nix
+++ b/pkgs/development/python-modules/moviepy/default.nix
@@ -4,6 +4,7 @@
 , numpy
 , decorator
 , imageio
+, isPy3k
 , tqdm
 }:
 

From 76f803f44e2d085c929be6ac78f41631b5adfd35 Mon Sep 17 00:00:00 2001
From: Sander Hollaar <github@humilis.net>
Date: Sun, 4 Nov 2018 18:35:17 +0100
Subject: [PATCH 0488/1129] tmux: fix tmux sha256 hash (#49327)

* tmux: fix tmux sha256 hash

* pin to upstream commit
---
 pkgs/tools/misc/tmux/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/misc/tmux/default.nix b/pkgs/tools/misc/tmux/default.nix
index 038b3206ac24..192c5eb0823b 100644
--- a/pkgs/tools/misc/tmux/default.nix
+++ b/pkgs/tools/misc/tmux/default.nix
@@ -20,8 +20,8 @@ stdenv.mkDerivation rec {
   src = fetchFromGitHub {
     owner = "tmux";
     repo = "tmux";
-    rev = version;
-    sha256 = "0n8sjddy00xgh1rvvw968hh72pyslg1gahmzajfc4b3xax87drpi";
+    rev = "01918cb0170e07288d3aec624516e6470bf5b7fc";
+    sha256 = "1fy87wvxn7r7jzqapvjisc1iizic3kxqk2lv83giqmw1y4g3s7rl";
   };
 
   postPatch = ''

From b1bdce07931dc69e3e3ba7738fac707b66f0f4cf Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sun, 4 Nov 2018 08:17:31 +0100
Subject: [PATCH 0489/1129] python34: remove

Python 3.4 will receive it's final patch release in March 2019 and there won't
be any releases anymore after that, so also not during NixOS 2019.03.

Python 3.4 is not used anymore in Nixpkgs. In any case, migrating code from
3.4 to 3.4+ is trivial.
---
 doc/languages-frameworks/python.section.md    |   9 +-
 .../python/cpython/3.4/default.nix            | 214 ------------------
 .../python/cpython/3.4/ld_library_path.patch  |  51 -----
 .../python/cpython/3.4/no-ldconfig.patch      | 147 ------------
 .../3.4/use-correct-tcl-tk-on-darwin.patch    |  48 ----
 pkgs/top-level/all-packages.nix               |   6 -
 6 files changed, 4 insertions(+), 471 deletions(-)
 delete mode 100644 pkgs/development/interpreters/python/cpython/3.4/default.nix
 delete mode 100644 pkgs/development/interpreters/python/cpython/3.4/ld_library_path.patch
 delete mode 100644 pkgs/development/interpreters/python/cpython/3.4/no-ldconfig.patch
 delete mode 100644 pkgs/development/interpreters/python/cpython/3.4/use-correct-tcl-tk-on-darwin.patch

diff --git a/doc/languages-frameworks/python.section.md b/doc/languages-frameworks/python.section.md
index e6c8ab37d68a..907f4d9152a7 100644
--- a/doc/languages-frameworks/python.section.md
+++ b/doc/languages-frameworks/python.section.md
@@ -483,8 +483,8 @@ and in this case the `python35` interpreter is automatically used.
 
 ### Interpreters
 
-Versions 2.7, 3.4, 3.5, 3.6 and 3.7 of the CPython interpreter are available as
-respectively `python27`, `python34`, `python35` and `python36`. The PyPy interpreter
+Versions 2.7, 3.5, 3.6 and 3.7 of the CPython interpreter are available as
+respectively `python27`, `python35` and `python36`. The PyPy interpreter
 is available as `pypy`. The aliases `python2` and `python3` correspond to respectively `python27` and
 `python35`. The default interpreter, `python`, maps to `python2`.
 The Nix expressions for the interpreters can be found in
@@ -507,7 +507,7 @@ Each interpreter has the following attributes:
 - `buildEnv`. Function to build python interpreter environments with extra packages bundled together. See section *python.buildEnv function* for usage and documentation.
 - `withPackages`. Simpler interface to `buildEnv`. See section *python.withPackages function* for usage and documentation.
 - `sitePackages`. Alias for `lib/${libPrefix}/site-packages`.
-- `executable`. Name of the interpreter executable, e.g. `python3.4`.
+- `executable`. Name of the interpreter executable, e.g. `python3.7`.
 - `pkgs`. Set of Python packages for that specific interpreter. The package set can be modified by overriding the interpreter and passing `packageOverrides`.
 
 ### Building packages and applications
@@ -529,7 +529,6 @@ attribute set is created for each available Python interpreter. The available
 sets are
 
 * `pkgs.python27Packages`
-* `pkgs.python34Packages`
 * `pkgs.python35Packages`
 * `pkgs.python36Packages`
 * `pkgs.python37Packages`
@@ -837,7 +836,7 @@ community to help save time. No tool is preferred at the moment.
 
 ### Deterministic builds
 
-Python 2.7, 3.5 and 3.6 are now built deterministically and 3.4 mostly.
+The Python interpreters are now built deterministically.
 Minor modifications had to be made to the interpreters in order to generate
 deterministic bytecode. This has security implications and is relevant for
 those using Python in a `nix-shell`.
diff --git a/pkgs/development/interpreters/python/cpython/3.4/default.nix b/pkgs/development/interpreters/python/cpython/3.4/default.nix
deleted file mode 100644
index 18b90cd1da46..000000000000
--- a/pkgs/development/interpreters/python/cpython/3.4/default.nix
+++ /dev/null
@@ -1,214 +0,0 @@
-{ stdenv, fetchurl, fetchpatch
-, bzip2
-, expat
-, libffi
-, gdbm
-, lzma
-, ncurses
-, openssl
-, readline
-, sqlite
-, tcl ? null, tk ? null, tix ? null, libX11 ? null, xproto ? null, x11Support ? false
-, zlib
-, callPackage
-, self
-, CF, configd
-, python-setup-hook
-# For the Python package set
-, packageOverrides ? (self: super: {})
-}:
-
-assert x11Support -> tcl != null
-                  && tk != null
-                  && xproto != null
-                  && libX11 != null;
-
-with stdenv.lib;
-
-let
-  majorVersion = "3.4";
-  minorVersion = "9";
-  minorVersionSuffix = "";
-  version = "${majorVersion}.${minorVersion}${minorVersionSuffix}";
-  libPrefix = "python${majorVersion}";
-  sitePackages = "lib/${libPrefix}/site-packages";
-
-  buildInputs = filter (p: p != null) [
-    zlib bzip2 expat lzma libffi gdbm sqlite readline ncurses openssl ]
-    ++ optionals x11Support [ tcl tk libX11 xproto ]
-    ++ optionals stdenv.isDarwin [ CF configd ];
-
-  hasDistutilsCxxPatch = !(stdenv.cc.isGNU or false);
-
-in stdenv.mkDerivation {
-  name = "python3-${version}";
-  pythonVersion = majorVersion;
-  inherit majorVersion version;
-
-  inherit buildInputs;
-
-  src = fetchurl {
-    url = "http://www.python.org/ftp/python/${version}/Python-${version}.tar.xz";
-    sha256 = "1n9b1kavmw8b7rc3gkrka4fjzrbfq9iqy791yncaf09bp9v9cqjr";
-  };
-
-  NIX_LDFLAGS = optionalString stdenv.isLinux "-lgcc_s";
-
-  # Determinism: The interpreter is patched to write null timestamps when compiling python files.
-  # This way python doesn't try to update them when we freeze timestamps in nix store.
-  DETERMINISTIC_BUILD=1;
-  # Determinism: We fix the hashes of str, bytes and datetime objects.
-  PYTHONHASHSEED=0;
-
-  prePatch = optionalString stdenv.isDarwin ''
-    substituteInPlace configure --replace '`/usr/bin/arch`' '"i386"'
-    substituteInPlace configure --replace '-Wl,-stack_size,1000000' ' '
-  '';
-
-  patches = [
-    ./no-ldconfig.patch
-    ./ld_library_path.patch
-  ] ++ optionals (x11Support && stdenv.isDarwin) [
-    ./use-correct-tcl-tk-on-darwin.patch
-  ] ++ optionals hasDistutilsCxxPatch [
-    # Fix for http://bugs.python.org/issue1222585
-    # Upstream distutils is calling C compiler to compile C++ code, which
-    # only works for GCC and Apple Clang. This makes distutils to call C++
-    # compiler when needed.
-    (fetchpatch {
-      url = "https://bugs.python.org/file47046/python-3.x-distutils-C++.patch";
-      sha256 = "0dgdn9k2kmw4wh90vdnjcrnn97ylxgx7mbn9l87fwz6j501jqvk8";
-      extraPrefix = "";
-    })
-  ];
-
-  postPatch = ''
-    # Determinism
-    substituteInPlace "Lib/py_compile.py" --replace "source_stats['mtime']" "(1 if 'DETERMINISTIC_BUILD' in os.environ else source_stats['mtime'])"
-    # Determinism. This is done unconditionally
-    substituteInPlace "Lib/importlib/_bootstrap.py" --replace "source_mtime = int(source_stats['mtime'])" "source_mtime = 1"
-  '' + optionalString (x11Support && (tix != null)) ''
-    substituteInPlace "Lib/tkinter/tix.py" --replace "os.environ.get('TIX_LIBRARY')" "os.environ.get('TIX_LIBRARY') or '${tix}/lib'"
-  ''
-    # Avoid picking up getentropy() from glibc >= 2.25, as that would break
-    # on older kernels.  http://bugs.python.org/issue29157
-    + optionalString stdenv.isLinux ''
-        substituteInPlace Python/random.c --replace 'defined(HAVE_GETENTROPY)' '0'
-        cat Python/random.c
-  '';
-
-  CPPFLAGS="${concatStringsSep " " (map (p: "-I${getDev p}/include") buildInputs)}";
-  LDFLAGS="${concatStringsSep " " (map (p: "-L${getLib p}/lib") buildInputs)}";
-  LIBS="${optionalString (!stdenv.isDarwin) "-lcrypt"} ${optionalString (ncurses != null) "-lncurses"}";
-
-  configureFlags = [
-    "--enable-shared"
-    "--with-threads"
-    "--without-ensurepip"
-    "--with-system-expat"
-    "--with-system-ffi"
-  ]
-    # Never even try to use lchmod on linux,
-    # don't rely on detecting glibc-isms.
-  ++ optional stdenv.hostPlatform.isLinux "ac_cv_func_lchmod=no";
-
-  preConfigure = ''
-    for i in /usr /sw /opt /pkg; do	# improve purity
-      substituteInPlace ./setup.py --replace $i /no-such-path
-    done
-    ${optionalString stdenv.isDarwin ''
-       export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -msse2"
-       export MACOSX_DEPLOYMENT_TARGET=10.6
-     ''
-     + optionalString stdenv.hostPlatform.isMusl ''
-      export NIX_CFLAGS_COMPILE+=" -DTHREAD_STACK_SIZE=0x100000"
-     ''}
-  '';
-
-  setupHook = python-setup-hook sitePackages;
-
-  postInstall = ''
-    # needed for some packages, especially packages that backport functionality
-    # to 2.x from 3.x
-    for item in $out/lib/python${majorVersion}/test/*; do
-      if [[ "$item" != */test_support.py*
-         && "$item" != */test/support
-         && "$item" != */test/libregrtest
-         && "$item" != */test/regrtest.py* ]]; then
-        rm -rf "$item"
-      else
-        echo $item
-      fi
-    done
-    touch $out/lib/python${majorVersion}/test/__init__.py
-
-    ln -s "$out/include/python${majorVersion}m" "$out/include/python${majorVersion}"
-    paxmark E $out/bin/python${majorVersion}
-
-    # Python on Nix is not manylinux1 compatible. https://github.com/NixOS/nixpkgs/issues/18484
-    echo "manylinux1_compatible=False" >> $out/lib/${libPrefix}/_manylinux.py
-
-    # Determinism: Windows installers were not deterministic.
-    # We're also not interested in building Windows installers.
-    find "$out" -name 'wininst*.exe' | xargs -r rm -f
-
-    # Use Python3 as default python
-    ln -s "$out/bin/idle3" "$out/bin/idle"
-    ln -s "$out/bin/pydoc3" "$out/bin/pydoc"
-    ln -s "$out/bin/python3" "$out/bin/python"
-    ln -s "$out/bin/python3-config" "$out/bin/python-config"
-    ln -s "$out/lib/pkgconfig/python3.pc" "$out/lib/pkgconfig/python.pc"
-
-    # Get rid of retained dependencies on -dev packages, and remove
-    # some $TMPDIR references to improve binary reproducibility.
-    # Note that the .pyc file of _sysconfigdata.py should be regenerated!
-    for i in $out/lib/python${majorVersion}/_sysconfigdata.py $out/lib/python${majorVersion}/config-${majorVersion}m/Makefile; do
-      sed -i $i -e "s|-I/nix/store/[^ ']*||g" -e "s|-L/nix/store/[^ ']*||g" -e "s|$TMPDIR|/no-such-path|g"
-    done
-
-    # Determinism: rebuild all bytecode
-    # We exclude lib2to3 because that's Python 2 code which fails
-    # We rebuild three times, once for each optimization level
-    find $out -name "*.py" | $out/bin/python -m compileall -q -f -x "lib2to3" -i -
-    find $out -name "*.py" | $out/bin/python -O -m compileall -q -f -x "lib2to3" -i -
-    find $out -name "*.py" | $out/bin/python -OO -m compileall -q -f -x "lib2to3" -i -
-  '';
-
-  passthru = let
-    pythonPackages = callPackage ../../../../../top-level/python-packages.nix {
-      python = self;
-      overrides = packageOverrides;
-    };
-  in rec {
-    inherit libPrefix sitePackages x11Support hasDistutilsCxxPatch;
-    executable = "${libPrefix}m";
-    buildEnv = callPackage ../../wrapper.nix { python = self; inherit (pythonPackages) requiredPythonModules; };
-    withPackages = import ../../with-packages.nix { inherit buildEnv pythonPackages;};
-    pkgs = pythonPackages;
-    isPy3 = true;
-    isPy34 = true;
-    is_py3k = true;  # deprecated
-    interpreter = "${self}/bin/${executable}";
-  };
-
-  enableParallelBuilding = true;
-
-  doCheck = false; # expensive, and fails
-
-  meta = {
-    homepage = http://python.org;
-    description = "A high-level dynamically-typed programming language";
-    longDescription = ''
-      Python is a remarkably powerful dynamic programming language that
-      is used in a wide variety of application domains. Some of its key
-      distinguishing features include: clear, readable syntax; strong
-      introspection capabilities; intuitive object orientation; natural
-      expression of procedural code; full modularity, supporting
-      hierarchical packages; exception-based error handling; and very
-      high level dynamic data types.
-    '';
-    license = licenses.psfl;
-    platforms = with platforms; linux ++ darwin;
-    maintainers = with maintainers; [ fridh ];
-  };
-}
diff --git a/pkgs/development/interpreters/python/cpython/3.4/ld_library_path.patch b/pkgs/development/interpreters/python/cpython/3.4/ld_library_path.patch
deleted file mode 100644
index 3172eb6d18e4..000000000000
--- a/pkgs/development/interpreters/python/cpython/3.4/ld_library_path.patch
+++ /dev/null
@@ -1,51 +0,0 @@
-From 85991e0d7f0e631240f3f6233bd65d1128a66dec Mon Sep 17 00:00:00 2001
-From: Frederik Rietdijk <fridh@fridh.nl>
-Date: Thu, 14 Sep 2017 10:00:31 +0200
-Subject: [PATCH] ctypes.util: support LD_LIBRARY_PATH
-
-Backports support for LD_LIBRARY_PATH from 3.6
----
- Lib/ctypes/util.py | 26 +++++++++++++++++++++++++-
- 1 file changed, 25 insertions(+), 1 deletion(-)
-
-diff --git a/Lib/ctypes/util.py b/Lib/ctypes/util.py
-index 780cd5d21b..d7ac15070f 100644
---- a/Lib/ctypes/util.py
-+++ b/Lib/ctypes/util.py
-@@ -181,8 +181,32 @@ elif os.name == "posix":
-         def _findSoname_ldconfig(name):
-             return None
- 
-+        def _findLib_ld(name):
-+            # See issue #9998 for why this is needed
-+            expr = r'[^\(\)\s]*lib%s\.[^\(\)\s]*' % re.escape(name)
-+            cmd = ['ld', '-t']
-+            libpath = os.environ.get('LD_LIBRARY_PATH')
-+            if libpath:
-+                for d in libpath.split(':'):
-+                    cmd.extend(['-L', d])
-+            cmd.extend(['-o', os.devnull, '-l%s' % name])
-+            result = None
-+            try:
-+                p = subprocess.Popen(cmd, stdout=subprocess.PIPE,
-+                                     stderr=subprocess.PIPE,
-+                                     universal_newlines=True)
-+                out, _ = p.communicate()
-+                res = re.search(expr, os.fsdecode(out))
-+                if res:
-+                    result = res.group(0)
-+            except Exception as e:
-+                pass  # result will be None
-+            return result
-+
-         def find_library(name):
--            return _findSoname_ldconfig(name) or _get_soname(_findLib_gcc(name))
-+            # See issue #9998
-+            return _findSoname_ldconfig(name) or \
-+                   _get_soname(_findLib_gcc(name) or _findLib_ld(name))
- 
- ################################################################
- # test code
--- 
-2.14.1
-
diff --git a/pkgs/development/interpreters/python/cpython/3.4/no-ldconfig.patch b/pkgs/development/interpreters/python/cpython/3.4/no-ldconfig.patch
deleted file mode 100644
index 3cb77a107254..000000000000
--- a/pkgs/development/interpreters/python/cpython/3.4/no-ldconfig.patch
+++ /dev/null
@@ -1,147 +0,0 @@
-From 81bd99ad9058feb1d0361bc8862e8567c21a6142 Mon Sep 17 00:00:00 2001
-From: Frederik Rietdijk <fridh@fridh.nl>
-Date: Mon, 28 Aug 2017 09:24:06 +0200
-Subject: [PATCH] Don't use ldconfig and speed up uuid load
-
----
- Lib/ctypes/util.py | 52 ++--------------------------------------------------
- Lib/uuid.py        | 50 ++------------------------------------------------
- 2 files changed, 4 insertions(+), 98 deletions(-)
-
-diff --git a/Lib/ctypes/util.py b/Lib/ctypes/util.py
-index 595113bffd..780cd5d21b 100644
---- a/Lib/ctypes/util.py
-+++ b/Lib/ctypes/util.py
-@@ -88,28 +88,7 @@ elif os.name == "posix":
-     import re, tempfile
- 
-     def _findLib_gcc(name):
--        expr = r'[^\(\)\s]*lib%s\.[^\(\)\s]*' % re.escape(name)
--        fdout, ccout = tempfile.mkstemp()
--        os.close(fdout)
--        cmd = 'if type gcc >/dev/null 2>&1; then CC=gcc; elif type cc >/dev/null 2>&1; then CC=cc;else exit 10; fi;' \
--              'LANG=C LC_ALL=C $CC -Wl,-t -o ' + ccout + ' 2>&1 -l' + name
--        try:
--            f = os.popen(cmd)
--            try:
--                trace = f.read()
--            finally:
--                rv = f.close()
--        finally:
--            try:
--                os.unlink(ccout)
--            except FileNotFoundError:
--                pass
--        if rv == 10:
--            raise OSError('gcc or cc command not found')
--        res = re.search(expr, trace)
--        if not res:
--            return None
--        return res.group(0)
-+        return None
- 
- 
-     if sys.platform == "sunos5":
-@@ -200,34 +179,7 @@ elif os.name == "posix":
-     else:
- 
-         def _findSoname_ldconfig(name):
--            import struct
--            if struct.calcsize('l') == 4:
--                machine = os.uname().machine + '-32'
--            else:
--                machine = os.uname().machine + '-64'
--            mach_map = {
--                'x86_64-64': 'libc6,x86-64',
--                'ppc64-64': 'libc6,64bit',
--                'sparc64-64': 'libc6,64bit',
--                's390x-64': 'libc6,64bit',
--                'ia64-64': 'libc6,IA-64',
--                }
--            abi_type = mach_map.get(machine, 'libc6')
--
--            # XXX assuming GLIBC's ldconfig (with option -p)
--            regex = os.fsencode(
--                '\s+(lib%s\.[^\s]+)\s+\(%s' % (re.escape(name), abi_type))
--            try:
--                with subprocess.Popen(['/sbin/ldconfig', '-p'],
--                                      stdin=subprocess.DEVNULL,
--                                      stderr=subprocess.DEVNULL,
--                                      stdout=subprocess.PIPE,
--                                      env={'LC_ALL': 'C', 'LANG': 'C'}) as p:
--                    res = re.search(regex, p.stdout.read())
--                    if res:
--                        return os.fsdecode(res.group(1))
--            except OSError:
--                pass
-+            return None
- 
-         def find_library(name):
-             return _findSoname_ldconfig(name) or _get_soname(_findLib_gcc(name))
-diff --git a/Lib/uuid.py b/Lib/uuid.py
-index 1061bffc43..846f5819f5 100644
---- a/Lib/uuid.py
-+++ b/Lib/uuid.py
-@@ -451,57 +451,11 @@ def _netbios_getnode():
-         return ((bytes[0]<<40) + (bytes[1]<<32) + (bytes[2]<<24) +
-                 (bytes[3]<<16) + (bytes[4]<<8) + bytes[5])
- 
--# Thanks to Thomas Heller for ctypes and for his help with its use here.
- 
--# If ctypes is available, use it to find system routines for UUID generation.
--# XXX This makes the module non-thread-safe!
- _uuid_generate_random = _uuid_generate_time = _UuidCreate = None
--try:
--    import ctypes, ctypes.util
- 
--    # The uuid_generate_* routines are provided by libuuid on at least
--    # Linux and FreeBSD, and provided by libc on Mac OS X.
--    for libname in ['uuid', 'c']:
--        try:
--            lib = ctypes.CDLL(ctypes.util.find_library(libname))
--        except:
--            continue
--        if hasattr(lib, 'uuid_generate_random'):
--            _uuid_generate_random = lib.uuid_generate_random
--        if hasattr(lib, 'uuid_generate_time'):
--            _uuid_generate_time = lib.uuid_generate_time
--            if _uuid_generate_random is not None:
--                break  # found everything we were looking for
--
--    # The uuid_generate_* functions are broken on MacOS X 10.5, as noted
--    # in issue #8621 the function generates the same sequence of values
--    # in the parent process and all children created using fork (unless
--    # those children use exec as well).
--    #
--    # Assume that the uuid_generate functions are broken from 10.5 onward,
--    # the test can be adjusted when a later version is fixed.
--    import sys
--    if sys.platform == 'darwin':
--        import os
--        if int(os.uname().release.split('.')[0]) >= 9:
--            _uuid_generate_random = _uuid_generate_time = None
--
--    # On Windows prior to 2000, UuidCreate gives a UUID containing the
--    # hardware address.  On Windows 2000 and later, UuidCreate makes a
--    # random UUID and UuidCreateSequential gives a UUID containing the
--    # hardware address.  These routines are provided by the RPC runtime.
--    # NOTE:  at least on Tim's WinXP Pro SP2 desktop box, while the last
--    # 6 bytes returned by UuidCreateSequential are fixed, they don't appear
--    # to bear any relationship to the MAC address of any network device
--    # on the box.
--    try:
--        lib = ctypes.windll.rpcrt4
--    except:
--        lib = None
--    _UuidCreate = getattr(lib, 'UuidCreateSequential',
--                          getattr(lib, 'UuidCreate', None))
--except:
--    pass
-+_uuid_generate_time = _UuidCreate = None
-+
- 
- def _unixdll_getnode():
-     """Get the hardware address on Unix using ctypes."""
--- 
-2.14.1
-
diff --git a/pkgs/development/interpreters/python/cpython/3.4/use-correct-tcl-tk-on-darwin.patch b/pkgs/development/interpreters/python/cpython/3.4/use-correct-tcl-tk-on-darwin.patch
deleted file mode 100644
index b73f62b97ec5..000000000000
--- a/pkgs/development/interpreters/python/cpython/3.4/use-correct-tcl-tk-on-darwin.patch
+++ /dev/null
@@ -1,48 +0,0 @@
-diff --git a/setup.py b/setup.py
-index 2779658..902d0eb 100644
---- a/setup.py
-+++ b/setup.py
-@@ -1699,9 +1699,6 @@ class PyBuildExt(build_ext):
-         # Rather than complicate the code below, detecting and building
-         # AquaTk is a separate method. Only one Tkinter will be built on
-         # Darwin - either AquaTk, if it is found, or X11 based Tk.
--        if (host_platform == 'darwin' and
--            self.detect_tkinter_darwin(inc_dirs, lib_dirs)):
--            return
-
-         # Assume we haven't found any of the libraries or include files
-         # The versions with dots are used on Unix, and the versions without
-@@ -1747,22 +1744,6 @@ class PyBuildExt(build_ext):
-             if dir not in include_dirs:
-                 include_dirs.append(dir)
-
--        # Check for various platform-specific directories
--        if host_platform == 'sunos5':
--            include_dirs.append('/usr/openwin/include')
--            added_lib_dirs.append('/usr/openwin/lib')
--        elif os.path.exists('/usr/X11R6/include'):
--            include_dirs.append('/usr/X11R6/include')
--            added_lib_dirs.append('/usr/X11R6/lib64')
--            added_lib_dirs.append('/usr/X11R6/lib')
--        elif os.path.exists('/usr/X11R5/include'):
--            include_dirs.append('/usr/X11R5/include')
--            added_lib_dirs.append('/usr/X11R5/lib')
--        else:
--            # Assume default location for X11
--            include_dirs.append('/usr/X11/include')
--            added_lib_dirs.append('/usr/X11/lib')
--
-         # If Cygwin, then verify that X is installed before proceeding
-         if host_platform == 'cygwin':
-             x11_inc = find_file('X11/Xlib.h', [], include_dirs)
-@@ -1786,10 +1767,6 @@ class PyBuildExt(build_ext):
-         if host_platform in ['aix3', 'aix4']:
-             libs.append('ld')
-
--        # Finally, link with the X11 libraries (not appropriate on cygwin)
--        if host_platform != "cygwin":
--            libs.append('X11')
--
-         ext = Extension('_tkinter', ['_tkinter.c', 'tkappinit.c'],
-                         define_macros=[('WITH_APPINIT', 1)] + defs,
-                         include_dirs = include_dirs,
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 46d32435114b..03aab60f40d2 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -7788,7 +7788,6 @@ with pkgs;
   python2Full = python2.override{x11Support=true;};
   python27Full = python27.override{x11Support=true;};
   python3Full = python3.override{x11Support=true;};
-  python34Full = python34.override{x11Support=true;};
   python35Full = python35.override{x11Support=true;};
   python36Full = python36.override{x11Support=true;};
   python37Full = python37.override{x11Support=true;};
@@ -7802,10 +7801,6 @@ with pkgs;
     self = python27;
     inherit (darwin) CF configd;
   };
-  python34 = callPackage ../development/interpreters/python/cpython/3.4 {
-    inherit (darwin) CF configd;
-    self = python34;
-  };
   python35 = callPackage ../development/interpreters/python/cpython/3.5 {
     inherit (darwin) CF configd;
     self = python35;
@@ -7827,7 +7822,6 @@ with pkgs;
 
   # Python package sets.
   python27Packages = lib.hiPrioSet (recurseIntoAttrs python27.pkgs);
-  python34Packages = python34.pkgs;
   python35Packages = python35.pkgs;
   python36Packages = recurseIntoAttrs python36.pkgs;
   python37Packages = python37.pkgs;

From 795f4b31b9438cc2c070da12b1c949afe0f05ed6 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sun, 4 Nov 2018 11:08:47 +0100
Subject: [PATCH 0490/1129] canto-{curses,daemon}: use python3 instead of
 python34

---
 .../networking/feedreaders/canto-curses/default.nix      | 6 +++---
 .../networking/feedreaders/canto-daemon/default.nix      | 9 ++++-----
 2 files changed, 7 insertions(+), 8 deletions(-)

diff --git a/pkgs/applications/networking/feedreaders/canto-curses/default.nix b/pkgs/applications/networking/feedreaders/canto-curses/default.nix
index 0190d5f9798f..36b4732ca2e7 100644
--- a/pkgs/applications/networking/feedreaders/canto-curses/default.nix
+++ b/pkgs/applications/networking/feedreaders/canto-curses/default.nix
@@ -1,8 +1,8 @@
-{ stdenv, fetchFromGitHub, python34Packages, readline, ncurses, canto-daemon }:
+{ stdenv, fetchFromGitHub, python3Packages, readline, ncurses, canto-daemon }:
 
-python34Packages.buildPythonApplication rec {
+python3Packages.buildPythonApplication rec {
   version = "0.9.9";
-  name = "canto-curses-${version}";
+  pname = "canto-curses";
 
   src = fetchFromGitHub {
     owner = "themoken";
diff --git a/pkgs/applications/networking/feedreaders/canto-daemon/default.nix b/pkgs/applications/networking/feedreaders/canto-daemon/default.nix
index 4b1721278e3d..e700c5634ad6 100644
--- a/pkgs/applications/networking/feedreaders/canto-daemon/default.nix
+++ b/pkgs/applications/networking/feedreaders/canto-daemon/default.nix
@@ -1,9 +1,8 @@
-{ stdenv, fetchFromGitHub, python34Packages, }:
+{ stdenv, fetchFromGitHub, python3Packages, }:
 
-python34Packages.buildPythonApplication rec {
+python3Packages.buildPythonApplication rec {
   version = "0.9.7";
-  name = "canto-daemon-${version}";
-  namePrefix = "";
+  pname = "canto-daemon";
 
   src = fetchFromGitHub {
     owner = "themoken";
@@ -12,7 +11,7 @@ python34Packages.buildPythonApplication rec {
     sha256 = "1si53r8cd4avfc56r315zyrghkppnjd6n125z1agfv59i7hdmk3n";
   };
 
-  propagatedBuildInputs = with python34Packages; [ feedparser ];
+  propagatedBuildInputs = with python3Packages; [ feedparser ];
 
   meta = {
     description = "Daemon for the canto Atom/RSS feed reader";

From 3059cf7f0c9e6bd6560164723059c10c223b03a9 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sun, 4 Nov 2018 11:11:39 +0100
Subject: [PATCH 0491/1129] retroarch: use python3 instead of python34

---
 pkgs/misc/emulators/retroarch/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/misc/emulators/retroarch/default.nix b/pkgs/misc/emulators/retroarch/default.nix
index a37d299fbf70..24b46c8f9caa 100644
--- a/pkgs/misc/emulators/retroarch/default.nix
+++ b/pkgs/misc/emulators/retroarch/default.nix
@@ -1,5 +1,5 @@
 { stdenv, fetchFromGitHub, which, pkgconfig, makeWrapper
-, ffmpeg, libGLU_combined, freetype, libxml2, python34
+, ffmpeg, libGLU_combined, freetype, libxml2, python3
 , libobjc, AppKit, Foundation
 , alsaLib ? null
 , libpulseaudio ? null
@@ -39,7 +39,7 @@ in stdenv.mkDerivation rec {
   nativeBuildInputs = [ pkgconfig ]
                       ++ optional withVulkan [ makeWrapper ];
 
-  buildInputs = [ ffmpeg freetype libxml2 libGLU_combined python34 SDL2 which ]
+  buildInputs = [ ffmpeg freetype libxml2 libGLU_combined python3 SDL2 which ]
                 ++ optional enableNvidiaCgToolkit nvidia_cg_toolkit
                 ++ optional withVulkan [ vulkan-loader ]
                 ++ optionals stdenv.isDarwin [ libobjc AppKit Foundation ]

From 6a0b1b13b6119e90fce8b024fef99fd27bb883b6 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sun, 4 Nov 2018 11:15:26 +0100
Subject: [PATCH 0492/1129] haskellPackages.cpython: set to null

because these are bindings for cpython 3.4 which we no longer distribute.
---
 pkgs/development/haskell-modules/configuration-common.nix | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix
index 56ffd6ee54ee..1a6d38ba5d8d 100644
--- a/pkgs/development/haskell-modules/configuration-common.nix
+++ b/pkgs/development/haskell-modules/configuration-common.nix
@@ -893,6 +893,9 @@ self: super: {
   # https://github.com/aisamanra/config-ini/issues/12
   config-ini = dontCheck super.config-ini;
 
+  # We've remove cpython 3.4 from nixpkgs
+  cpython = null;
+
   # doctest >=0.9 && <0.12
   genvalidity-property = doJailbreak super.genvalidity-property;
   path = dontCheck super.path;

From 17e863d0176f76712b4d12e58364e80bedbf7285 Mon Sep 17 00:00:00 2001
From: Robert Hensing <robert@roberthensing.nl>
Date: Sun, 4 Nov 2018 20:43:41 +0100
Subject: [PATCH 0493/1129] Remove incorrect sentence from make-channel comment

Besides being incorrect, claims like these tend to stick around
after they become incorrect.
---
 nixos/lib/make-channel.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nixos/lib/make-channel.nix b/nixos/lib/make-channel.nix
index 0db4a46151de..9b920b989fcf 100644
--- a/nixos/lib/make-channel.nix
+++ b/nixos/lib/make-channel.nix
@@ -1,6 +1,6 @@
 /* Build a channel tarball. These contain, in addition to the nixpkgs
  * expressions themselves, files that indicate the version of nixpkgs
- * that they represent. This only seems to be used by Travis.
+ * that they represent.
  */
 { pkgs, nixpkgs, version, versionSuffix }:
 

From d2c38d1eefdb7e55f6bd75617e6f9c6e3943123d Mon Sep 17 00:00:00 2001
From: Vincent Laporte <Vincent.Laporte@gmail.com>
Date: Tue, 30 Oct 2018 10:47:44 +0000
Subject: [PATCH 0494/1129] coqPackages.mathcomp: refactor

---
 .../coq-modules/mathcomp/default.nix          | 46 +++++++++++++++++--
 .../coq-modules/mathcomp/generic.nix          | 42 -----------------
 2 files changed, 41 insertions(+), 47 deletions(-)
 delete mode 100644 pkgs/development/coq-modules/mathcomp/generic.nix

diff --git a/pkgs/development/coq-modules/mathcomp/default.nix b/pkgs/development/coq-modules/mathcomp/default.nix
index 92c3c87774ab..99a6fe311a01 100644
--- a/pkgs/development/coq-modules/mathcomp/default.nix
+++ b/pkgs/development/coq-modules/mathcomp/default.nix
@@ -1,6 +1,8 @@
-{ callPackage, fetchurl, coq }:
+{ stdenv, fetchurl, coq, ncurses, which
+, graphviz, withDoc ? false
+}:
 
-let param =
+let params =
 
   let param_1_7 = {
       version = "1.7.0";
@@ -16,14 +18,48 @@ let param =
     "8.6" = param_1_7;
     "8.7" = param_1_7;
     "8.8" = param_1_7;
+    "8.9" = param_1_7;
 
-  }."${coq.coq-version}"
-; in
+  };
+  param = params."${coq.coq-version}";
+in
 
-callPackage ./generic.nix {
+stdenv.mkDerivation {
   name = "coq${coq.coq-version}-mathcomp-${param.version}";
+
   src = fetchurl {
     url = "https://github.com/math-comp/math-comp/archive/mathcomp-${param.version}.tar.gz";
     inherit (param) sha256;
   };
+
+  nativeBuildInputs = stdenv.lib.optionals withDoc [ graphviz ];
+  buildInputs = [ coq ncurses which ] ++ (with coq.ocamlPackages; [ ocaml findlib camlp5 ]);
+
+  enableParallelBuilding = true;
+
+  buildFlags = stdenv.lib.optionalString withDoc "doc";
+
+  preBuild = ''
+    patchShebangs etc/utils/ssrcoqdep || true
+    cd mathcomp
+    export COQBIN=${coq}/bin/
+  '';
+
+  installPhase = ''
+    make -f Makefile.coq COQLIB=$out/lib/coq/${coq.coq-version}/ install
+  '' + stdenv.lib.optionalString withDoc ''
+    make -f Makefile.coq install-doc DOCDIR=$out/share/coq/${coq.coq-version}/
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = http://ssr.msr-inria.inria.fr/;
+    license = licenses.cecill-b;
+    maintainers = [ maintainers.vbgl maintainers.jwiegley ];
+    platforms = coq.meta.platforms;
+  };
+
+  passthru = {
+    compatibleCoqVersions = v: builtins.hasAttr v params;
+  };
+
 }
diff --git a/pkgs/development/coq-modules/mathcomp/generic.nix b/pkgs/development/coq-modules/mathcomp/generic.nix
deleted file mode 100644
index 2a602711965f..000000000000
--- a/pkgs/development/coq-modules/mathcomp/generic.nix
+++ /dev/null
@@ -1,42 +0,0 @@
-{ stdenv, coq, ncurses, which
-, graphviz, withDoc ? false
-, src, name
-}:
-
-stdenv.mkDerivation {
-
-  inherit name;
-  inherit src;
-
-  nativeBuildInputs = stdenv.lib.optionals withDoc [ graphviz ];
-  buildInputs = with coq.ocamlPackages; [ ocaml findlib camlp5 ncurses which ];
-  propagatedBuildInputs = [ coq ];
-
-  enableParallelBuilding = true;
-
-  buildFlags = stdenv.lib.optionalString withDoc "doc";
-
-  preBuild = ''
-    patchShebangs etc/utils/ssrcoqdep || true
-    cd mathcomp
-    export COQBIN=${coq}/bin/
-  '';
-
-  installPhase = ''
-    make -f Makefile.coq COQLIB=$out/lib/coq/${coq.coq-version}/ install
-  '' + stdenv.lib.optionalString withDoc ''
-    make -f Makefile.coq install-doc DOCDIR=$out/share/coq/${coq.coq-version}/
-  '';
-
-  meta = with stdenv.lib; {
-    homepage = http://ssr.msr-inria.inria.fr/;
-    license = licenses.cecill-b;
-    maintainers = [ maintainers.vbgl maintainers.jwiegley ];
-    platforms = coq.meta.platforms;
-  };
-
-  passthru = {
-    compatibleCoqVersions = v: builtins.elem v [ "8.5" "8.6" "8.7" "8.8" ];
-  };
-
-}

From b3f6840d8e8ddba9ce5aa3d5a07479e3663cb38a Mon Sep 17 00:00:00 2001
From: Vincent Laporte <Vincent.Laporte@gmail.com>
Date: Sun, 4 Nov 2018 07:07:46 +0000
Subject: [PATCH 0495/1129] coqPackages.ssreflect: refactor

---
 .../coq-modules/ssreflect/default.nix         | 47 ++++++++++++++++--
 .../coq-modules/ssreflect/generic.nix         | 49 -------------------
 2 files changed, 42 insertions(+), 54 deletions(-)
 delete mode 100644 pkgs/development/coq-modules/ssreflect/generic.nix

diff --git a/pkgs/development/coq-modules/ssreflect/default.nix b/pkgs/development/coq-modules/ssreflect/default.nix
index 9e9c3c7957aa..840189e347a5 100644
--- a/pkgs/development/coq-modules/ssreflect/default.nix
+++ b/pkgs/development/coq-modules/ssreflect/default.nix
@@ -1,6 +1,8 @@
-{ callPackage, fetchurl, coq }:
+{ stdenv, fetchurl, coq, ncurses, which
+, graphviz, withDoc ? false
+}:
 
-let param =
+let params =
 
   let param_1_7 = {
     version = "1.7.0";
@@ -16,14 +18,49 @@ let param =
     "8.6" = param_1_7;
     "8.7" = param_1_7;
     "8.8" = param_1_7;
+    "8.9" = param_1_7;
 
-  }."${coq.coq-version}"
-; in
+  };
+  param = params."${coq.coq-version}";
+in
+
+stdenv.mkDerivation {
 
-callPackage ./generic.nix {
   name = "coq${coq.coq-version}-ssreflect-${param.version}";
   src = fetchurl {
     url = "https://github.com/math-comp/math-comp/archive/mathcomp-${param.version}.tar.gz";
     inherit (param) sha256;
   };
+
+  nativeBuildInputs = stdenv.lib.optionals withDoc [ graphviz ];
+  buildInputs = [ coq ncurses which ] ++ (with coq.ocamlPackages; [ ocaml findlib camlp5 ]);
+
+  enableParallelBuilding = true;
+
+  preBuild = ''
+    patchShebangs etc/utils/ssrcoqdep || true
+    cd mathcomp/ssreflect
+    export COQBIN=${coq}/bin/
+  '';
+
+  installPhase = ''
+    make -f Makefile.coq COQLIB=$out/lib/coq/${coq.coq-version}/ install
+  '';
+
+  postInstall = stdenv.lib.optionalString withDoc ''
+    mkdir -p $out/share/doc/coq/${coq.coq-version}/user-contrib/mathcomp/ssreflect/
+    cp -r html $out/share/doc/coq/${coq.coq-version}/user-contrib/mathcomp/ssreflect/
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = http://ssr.msr-inria.inria.fr/;
+    license = licenses.cecill-b;
+    maintainers = with maintainers; [ vbgl jwiegley ];
+    inherit (coq.meta) platforms;
+  };
+
+  passthru = {
+    compatibleCoqVersions = v: builtins.hasAttr v params;
+  };
+
 }
diff --git a/pkgs/development/coq-modules/ssreflect/generic.nix b/pkgs/development/coq-modules/ssreflect/generic.nix
deleted file mode 100644
index 23e364cd960d..000000000000
--- a/pkgs/development/coq-modules/ssreflect/generic.nix
+++ /dev/null
@@ -1,49 +0,0 @@
-{ stdenv, coq, ncurses, which
-, graphviz, withDoc ? false
-, src, name, patches ? []
-}:
-
-stdenv.mkDerivation {
-
-  inherit name;
-  inherit src;
-
-  nativeBuildInputs = stdenv.lib.optionals withDoc [ graphviz ];
-  buildInputs = with coq.ocamlPackages; [ ocaml findlib camlp5 ncurses which ];
-  propagatedBuildInputs = [ coq ];
-
-  enableParallelBuilding = true;
-
-  inherit patches;
-
-  preBuild = ''
-    patchShebangs etc/utils/ssrcoqdep || true
-    cd mathcomp/ssreflect
-    export COQBIN=${coq}/bin/
-  '';
-
-  installPhase = ''
-    make -f Makefile.coq COQLIB=$out/lib/coq/${coq.coq-version}/ install
-  '';
-
-  postInstall = ''
-    # mkdir -p $out/bin
-    # cp -p bin/ssrcoq $out/bin
-    # cp -p bin/ssrcoq.byte $out/bin
-  '' + stdenv.lib.optionalString withDoc ''
-    mkdir -p $out/share/doc/coq/${coq.coq-version}/user-contrib/mathcomp/ssreflect/
-    cp -r html $out/share/doc/coq/${coq.coq-version}/user-contrib/mathcomp/ssreflect/
-  '';
-
-  meta = with stdenv.lib; {
-    homepage = http://ssr.msr-inria.inria.fr/;
-    license = licenses.cecill-b;
-    maintainers = with maintainers; [ vbgl jwiegley ];
-    platforms = coq.meta.platforms;
-  };
-
-  passthru = {
-    compatibleCoqVersions = v: builtins.elem v [ "8.5" "8.6" "8.7" "8.8" ];
-  };
-
-}

From e338d801e207a888e3125d88108e8166c94034ac Mon Sep 17 00:00:00 2001
From: Vincent Laporte <Vincent.Laporte@gmail.com>
Date: Sun, 4 Nov 2018 17:39:09 +0000
Subject: [PATCH 0496/1129] =?UTF-8?q?mkCoqPackages:=20look=20for=20?=
 =?UTF-8?q?=E2=80=9CdontFilter=E2=80=9D=20in=20coq=20derivation?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 pkgs/top-level/coq-packages.nix | 11 ++++++++++-
 1 file changed, 10 insertions(+), 1 deletion(-)

diff --git a/pkgs/top-level/coq-packages.nix b/pkgs/top-level/coq-packages.nix
index 3ba90f3b5943..2084140c3fd8 100644
--- a/pkgs/top-level/coq-packages.nix
+++ b/pkgs/top-level/coq-packages.nix
@@ -48,9 +48,18 @@ let
 
 in rec {
 
+  /* The function `mkCoqPackages` takes as input a derivation for Coq and produces
+   * a set of libraries built with that specific Coq. More libraries are known to
+   * this function than what is compatible with that version of Coq. Therefore,
+   * libraries that are not known to be compatible are removed (filtered out) from
+   * the resulting set. For meta-programming purposes (inpecting the derivations
+   * rather than building the libraries) this filtering can be disabled by setting
+   * a `dontFilter` attribute into the Coq derivation.
+   */
   mkCoqPackages = coq:
     let self = mkCoqPackages' self coq; in
-    filterCoqPackages coq self;
+    if coq.dontFilter or false then self
+    else filterCoqPackages coq self;
 
   coq_8_5 = callPackage ../applications/science/logic/coq {
     ocamlPackages = ocamlPackages_4_05;

From fa30c8cfca9519944beb063cffea816979a57c55 Mon Sep 17 00:00:00 2001
From: Robert Helgesson <robert@rycee.net>
Date: Sun, 4 Nov 2018 22:36:45 +0100
Subject: [PATCH 0497/1129] lombok: 1.16.22 -> 1.18.4

---
 pkgs/development/libraries/java/lombok/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/java/lombok/default.nix b/pkgs/development/libraries/java/lombok/default.nix
index 5ec4634d6323..7f932d52dc41 100644
--- a/pkgs/development/libraries/java/lombok/default.nix
+++ b/pkgs/development/libraries/java/lombok/default.nix
@@ -1,11 +1,11 @@
 { stdenv, fetchurl }:
 
 stdenv.mkDerivation rec {
-  name = "lombok-1.16.22";
+  name = "lombok-1.18.4";
 
   src = fetchurl {
     url = "https://projectlombok.org/downloads/${name}.jar";
-    sha256 = "1hr2jjlqdnxrw7ablqkf7ljc6n2q6a04ww14di06zs6i3l82zzpa";
+    sha256 = "0hlpycnmzd71ihn59hzf445dvwky2lkv57jimx91i6v7xcnr5wrr";
   };
 
   buildCommand = ''

From b682778366f91bd3a2b5746cfc951ad429904f16 Mon Sep 17 00:00:00 2001
From: Robert Hensing <robert@roberthensing.nl>
Date: Sun, 4 Nov 2018 23:09:43 +0100
Subject: [PATCH 0498/1129] nixos/../nixpkgs.nix: Add assertions to check pkgs'
 system

---
 nixos/modules/misc/nixpkgs.nix | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)

diff --git a/nixos/modules/misc/nixpkgs.nix b/nixos/modules/misc/nixpkgs.nix
index 461a3b68ed61..2bebbdcad94a 100644
--- a/nixos/modules/misc/nixpkgs.nix
+++ b/nixos/modules/misc/nixpkgs.nix
@@ -218,5 +218,24 @@ in
     _module.args = {
       pkgs = finalPkgs;
     };
+
+    assertions = [
+      (
+        let
+          nixosExpectedSystem =
+            if config.nixpkgs.crossSystem != null
+            then config.nixpkgs.crossSystem.system
+            else config.nixpkgs.localSystem.system;
+          nixosOption =
+            if config.nixpkgs.crossSystem != null
+            then "nixpkgs.crossSystem"
+            else "nixpkgs.localSystem";
+          pkgsSystem = finalPkgs.stdenv.targetPlatform.system;
+        in {
+          assertion = nixosExpectedSystem == pkgsSystem;
+          message = "The NixOS nixpkgs.pkgs option was set to a Nixpkgs invocation that compiles to target system ${pkgsSystem} but NixOS was configured for system ${nixosExpectedSystem} via NixOS option ${nixosOption}. The NixOS system settings must match the Nixpkgs target system.";
+        }
+      )
+    ];
   };
 }

From 1d077e6286edd27f57f5ca9a81956a1d0bd5d491 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Mon, 5 Nov 2018 00:09:22 +0100
Subject: [PATCH 0499/1129] remmina: fix version

---
 pkgs/applications/networking/remote/remmina/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/applications/networking/remote/remmina/default.nix b/pkgs/applications/networking/remote/remmina/default.nix
index 81ced3e641bc..dc17ccc4a370 100644
--- a/pkgs/applications/networking/remote/remmina/default.nix
+++ b/pkgs/applications/networking/remote/remmina/default.nix
@@ -11,7 +11,7 @@
 
 with stdenv.lib;
 
-stdenv.mkDerivation {
+stdenv.mkDerivation rec {
   name = "remmina-${version}";
   version = "1.2.32";
 

From 69522a0acf8e840e8b6ac0a9752a034ab74eb3c0 Mon Sep 17 00:00:00 2001
From: Robert Helgesson <robert@rycee.net>
Date: Mon, 5 Nov 2018 00:08:46 +0100
Subject: [PATCH 0500/1129] svtplay-dl: 1.9.11 -> 2.1

---
 pkgs/tools/misc/svtplay-dl/default.nix | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/pkgs/tools/misc/svtplay-dl/default.nix b/pkgs/tools/misc/svtplay-dl/default.nix
index e29e799898c3..5502f2542f12 100644
--- a/pkgs/tools/misc/svtplay-dl/default.nix
+++ b/pkgs/tools/misc/svtplay-dl/default.nix
@@ -1,22 +1,22 @@
 { stdenv, fetchFromGitHub, makeWrapper, python3Packages, perl, zip
-, rtmpdump }:
+, rtmpdump, gitMinimal }:
 
 let
-  inherit (python3Packages) python nose pycrypto requests mock;
+  inherit (python3Packages) python nose pycrypto pyyaml requests mock;
 in stdenv.mkDerivation rec {
   name = "svtplay-dl-${version}";
-  version = "1.9.11";
+  version = "2.1";
 
   src = fetchFromGitHub {
     owner = "spaam";
     repo = "svtplay-dl";
     rev = version;
-    sha256 = "14p2362rzyblma9321z4zrcbzfs9m269ry6sz44ly0bv5fik7gdy";
+    sha256 = "1cnc32gbhs955391hs1x1jpjsl3b6pqy7ysdydmp9q1i2rw105ln";
   };
 
-  pythonPaths = [ pycrypto requests ];
+  pythonPaths = [ pycrypto pyyaml requests ];
   buildInputs = [ python perl nose mock rtmpdump makeWrapper ] ++ pythonPaths;
-  nativeBuildInputs = [ zip ];
+  nativeBuildInputs = [ gitMinimal zip ];
 
   postPatch = ''
     substituteInPlace lib/svtplay_dl/fetcher/rtmp.py \

From f2fadc0e91abc0488fb7127d8513239a5885717c Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Mon, 5 Nov 2018 00:24:04 +0100
Subject: [PATCH 0501/1129] darwin: don't include cf-private in framework
 dependencies

Using cf-private can cause problems, it's better to include it
explicitly in places where it's actually required.
---
 pkgs/os-specific/darwin/apple-sdk/frameworks.nix | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/pkgs/os-specific/darwin/apple-sdk/frameworks.nix b/pkgs/os-specific/darwin/apple-sdk/frameworks.nix
index 9e47b8d02fdf..aab2852c1689 100644
--- a/pkgs/os-specific/darwin/apple-sdk/frameworks.nix
+++ b/pkgs/os-specific/darwin/apple-sdk/frameworks.nix
@@ -34,7 +34,7 @@ with frameworks; with libs; {
   CoreMIDIServer          = [];
   CoreMedia               = [ ApplicationServices AudioToolbox CoreAudio CF CoreGraphics CoreVideo ];
   CoreMediaIO             = [ CF CoreMedia ];
-  CoreText                = [ CF CoreGraphics cf-private ];
+  CoreText                = [ CF CoreGraphics ];
   CoreVideo               = [ ApplicationServices CF CoreGraphics IOSurface OpenGL ];
   CoreWLAN                = [ SecurityFoundation ];
   DVComponentGlue         = [ CoreServices QuickTime ];
@@ -48,8 +48,7 @@ with frameworks; with libs; {
   ExceptionHandling       = [];
   FWAUserLib              = [];
   ForceFeedback           = [ CF IOKit ];
-  # cf-private was moved first in list because of https://github.com/NixOS/nixpkgs/pull/28635
-  Foundation              = [ cf-private CF libobjc Security ApplicationServices SystemConfiguration ];
+  Foundation              = [ CF libobjc Security ApplicationServices SystemConfiguration ];
   GLKit                   = [ CF ];
   GLUT                    = [ OpenGL ];
   GSS                     = [];

From 4056c436c983763ed848d0e35ffafc7509d07b73 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Sun, 4 Nov 2018 20:01:48 -0600
Subject: [PATCH 0502/1129] http-parser: cleanup

---
 .../libraries/http-parser/default.nix         | 40 +++++--------------
 1 file changed, 10 insertions(+), 30 deletions(-)

diff --git a/pkgs/development/libraries/http-parser/default.nix b/pkgs/development/libraries/http-parser/default.nix
index 5d4eae4e0639..02d767000682 100644
--- a/pkgs/development/libraries/http-parser/default.nix
+++ b/pkgs/development/libraries/http-parser/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, python2Packages, utillinux, fixDarwinDylibNames }:
+{ stdenv, fetchurl }:
 
 let
   version = "2.8.1";
@@ -10,38 +10,18 @@ in stdenv.mkDerivation {
     sha256 = "15ids8k2f0xhnnxh4m85w2f78pg5ndiwrpl24kyssznnp1l5yqai";
   };
 
+  NIX_CFLAGS_COMPILE = "-Wno-error";
   patches = [ ./build-shared.patch ];
+  makeFlags = [ "DESTDIR=" "PREFIX=$(out)" ];
+  buildFlags = "library";
+  doCheck = true;
+  checkTarget = "test";
 
-  configurePhase = "gyp -f make --depth=`pwd` http_parser.gyp";
-
-  buildFlags = [ "BUILDTYPE=Release" ];
-
-  buildInputs =
-    [ python2Packages.gyp ]
-    ++ stdenv.lib.optional stdenv.isLinux utillinux
-    ++ stdenv.lib.optionals stdenv.isDarwin [ python2Packages.python fixDarwinDylibNames ];
-
-  doCheck = !stdenv.isDarwin;
-
-  checkPhase = ''
-    out/Release/test-nonstrict
-    out/Release/test-strict
-  '';
-
-  installPhase = ''
-    mkdir -p $out/lib
-    mv out/Release/${if stdenv.isDarwin then "*.dylib" else "lib.target/*"} $out/lib
-
-    mkdir -p $out/include
-    mv http_parser.h $out/include
-  '';
-
-  meta = {
+  meta = with stdenv.lib; {
     description = "An HTTP message parser written in C";
-
     homepage = https://github.com/joyent/http-parser;
-
-    license = stdenv.lib.licenses.mit;
-    platforms = stdenv.lib.platforms.unix;
+    maintainers = with maintainers; [ matthewbauer ];
+    license = licenses.mit;
+    platforms = platforms.unix;
   };
 }

From 95373d3634d6431037d8d752513392227c76c66b Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Sun, 4 Nov 2018 20:12:55 -0600
Subject: [PATCH 0503/1129] atlas: remove

atlas is broken and can apparently be removed.

Fixes #49594
---
 .../science/math/giac/default.nix             |   4 +-
 .../science/physics/xfitter/default.nix       |   4 +-
 .../libraries/science/math/atlas/default.nix  | 126 --------
 .../atlas/disable-timing-accuracy-check.patch |  22 --
 .../libraries/science/math/atlas/tmpdir.patch | 276 ------------------
 .../science/math/liblapack/default.nix        |  18 +-
 pkgs/top-level/all-packages.nix               |  24 +-
 pkgs/top-level/release-small.nix              |   1 -
 8 files changed, 7 insertions(+), 468 deletions(-)
 delete mode 100644 pkgs/development/libraries/science/math/atlas/default.nix
 delete mode 100644 pkgs/development/libraries/science/math/atlas/disable-timing-accuracy-check.patch
 delete mode 100644 pkgs/development/libraries/science/math/atlas/tmpdir.patch

diff --git a/pkgs/applications/science/math/giac/default.nix b/pkgs/applications/science/math/giac/default.nix
index 6a0b686602ff..2823165d0226 100644
--- a/pkgs/applications/science/math/giac/default.nix
+++ b/pkgs/applications/science/math/giac/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, fetchpatch, texlive, bison, flex, liblapackWithoutAtlas
+{ stdenv, fetchurl, fetchpatch, texlive, bison, flex, liblapack
 , gmp, mpfr, pari, ntl, gsl, blas, mpfi
 , readline, gettext, libpng, libao, gfortran, perl
 , enableGUI ? false, libGLU_combined ? null, xorg ? null, fltk ? null
@@ -42,7 +42,7 @@ stdenv.mkDerivation rec {
     # gfortran.cc default output contains static libraries compiled without -fPIC
     # we want libgfortran.so.3 instead
     (stdenv.lib.getLib gfortran.cc)
-    liblapackWithoutAtlas
+    liblapack
   ] ++ stdenv.lib.optionals enableGUI [
     libGLU_combined fltk xorg.libX11
   ];
diff --git a/pkgs/applications/science/physics/xfitter/default.nix b/pkgs/applications/science/physics/xfitter/default.nix
index a6ec9960045d..833370f81443 100644
--- a/pkgs/applications/science/physics/xfitter/default.nix
+++ b/pkgs/applications/science/physics/xfitter/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, apfel, apfelgrid, applgrid, blas, gfortran, lhapdf, liblapackWithoutAtlas, libyaml, lynx, mela, root5, qcdnum, which }:
+{ stdenv, fetchurl, apfel, apfelgrid, applgrid, blas, gfortran, lhapdf, liblapack, libyaml, lynx, mela, root5, qcdnum, which }:
 
 stdenv.mkDerivation rec {
   name = "xfitter-${version}";
@@ -34,7 +34,7 @@ stdenv.mkDerivation rec {
 
   nativeBuildInputs = [ gfortran which ];
   buildInputs =
-    [ apfel apfelgrid applgrid blas lhapdf liblapackWithoutAtlas mela root5 qcdnum ]
+    [ apfel apfelgrid applgrid blas lhapdf liblapack mela root5 qcdnum ]
     # pdf2yaml requires fmemopen and open_memstream which are not readily available on Darwin
     ++ stdenv.lib.optional (!stdenv.isDarwin) libyaml
     ;
diff --git a/pkgs/development/libraries/science/math/atlas/default.nix b/pkgs/development/libraries/science/math/atlas/default.nix
deleted file mode 100644
index fb90ed754da9..000000000000
--- a/pkgs/development/libraries/science/math/atlas/default.nix
+++ /dev/null
@@ -1,126 +0,0 @@
-{ stdenv, fetchurl, gfortran, tolerateCpuTimingInaccuracy ? true, shared ? false
-, cpuConfig ? if stdenv.isi686 then "-b 32 -A 12 -V 1" else "-b 64 -A 14 -V 384"
-, cacheEdge ? "262144"
-, threads ? "0"
-, liblapack, withLapack
-}:
-
-# Atlas detects the CPU and optimizes its build accordingly. This is great when
-# the code is run on the same machine that built the binary, but in case of a
-# central build farm like Hydra, this feature is dangerous because the code may
-# be generated utilizing fancy features that users who download the binary
-# cannot execute.
-#
-# To avoid these issues, the build is configured using the 'cpuConfig'
-# parameter. Upstream recommends these defaults for distributions:
-#
-#   | x86 CPU                                     | x86_64 CPU             |
-#   |---------------------------------------------+------------------------|
-#   | -b 32                                       | -b 64                  |
-#   | -A 12  (x86x87)                             | -A 14 (x86SSE2)        |
-#   | -V 1 (No SIMD)                              | -V 384 (SSE1 and SSE2) |
-#
-# These defaults should give consistent performance across machines.
-# Performance will be substantially lower than an optimized build, but a build
-# optimized for one machine will give even worse performance on others. If you
-# are a serious user of Atlas (e.g., you write code that uses it) you should
-# compile an optimized version for each of your machines.
-#
-# The parameter 'cacheEdge' sets the L2 cache per core (in bytes). Setting this
-# parameter reduces build time because some tests to detect the L2 cache size
-# will not be run. It will also reduce impurity; different build nodes on Hydra
-# may have different L2 cache sizes, but fixing the L2 cache size should
-# account for that. This also makes the performance of binary substitutes more
-# consistent.
-#
-# The -V flags can change with each release as new instruction sets are added
-# because upstream thinks it's a good idea to add entries at the start of an
-# enum, rather than the end. If the build suddenly fails with messages about
-# missing instruction sets, you may need to poke around in the source a bit.
-#
-# Upstream recommends the x86x87/x86SSE2 architectures for generic x86/x86_64
-# for distribution builds. Additionally, we set 'cacheEdge' to reduce impurity.
-# Otherwise, the cache parameters will be detected by timing which will be
-# highly variable on Hydra.
-
-let
-  inherit (stdenv.lib) optional optionalString;
-  # Don't upgrade until https://github.com/math-atlas/math-atlas/issues/44
-  # is resolved.
-  version = "3.10.3";
-in
-
-stdenv.mkDerivation {
-  name = "atlas${optionalString withLapack "-with-lapack"}-${version}";
-
-  src = fetchurl {
-    url = "mirror://sourceforge/math-atlas/atlas${version}.tar.bz2";
-    sha256 = "1dyjlq3fiparvm8ypwk6rsmjzmnwk81l88gkishphpvc79ryp216";
-  };
-
-  buildInputs = [ gfortran ];
-
-  # Atlas aborts the build if it detects that some kind of CPU frequency
-  # scaling is active on the build machine because that feature offsets the
-  # performance timings. We ignore that check, however, because with binaries
-  # being pre-built on Hydra those timings aren't accurate for the local
-  # machine in the first place.
-  patches = optional tolerateCpuTimingInaccuracy ./disable-timing-accuracy-check.patch
-    ++ optional stdenv.isDarwin ./tmpdir.patch;
-
-  hardeningDisable = [ "format" ];
-
-  # Configure outside of the source directory.
-  preConfigure = ''
-    mkdir build
-    cd build
-    configureScript=../configure
-  '';
-
-  # * -t 0 disables use of multi-threading. It's not quite clear what the
-  #   consequences of that setting are and whether it's necessary or not.
-  configureFlags = [
-    "-t ${threads}"
-    cpuConfig
-  ] ++ optional shared "--shared"
-    ++ optional withLapack "--with-netlib-lapack-tarfile=${liblapack.src}";
-
-  postConfigure = ''
-    if [[ -n "${cacheEdge}" ]]; then
-      echo '#define CacheEdge ${cacheEdge}' >> include/atlas_cacheedge.h
-      echo '#define CacheEdge ${cacheEdge}' >> include/atlas_tcacheedge.h
-    fi
-  '';
-
-  doCheck = true;
-
-  postInstall = ''
-    # Avoid name collision with the real lapack (ATLAS only builds a partial
-    # lapack unless withLapack = true).
-    if ${if withLapack then "false" else "true"}; then
-      mv $out/lib/liblapack.a $out/lib/liblapack_atlas.a
-    fi
-  '';
-
-  # 1. /buildATLAS/build/bin/ATLrun.sh: multiple segfaults.
-  # 2. "atlas does its own parallel builds"
-  enableParallelBuilding = false;
-
-  meta = {
-    homepage = http://math-atlas.sourceforge.net/;
-    description = "Automatically Tuned Linear Algebra Software (ATLAS)";
-    license = stdenv.lib.licenses.bsd3;
-    broken = stdenv.isDarwin;  # test when updating to >=3.10.3
-    platforms = stdenv.lib.platforms.unix;
-
-    longDescription = ''
-      The ATLAS (Automatically Tuned Linear Algebra Software) project is an
-      ongoing research effort focusing on applying empirical techniques in
-      order to provide portable performance. At present, it provides C and
-      Fortran77 interfaces to a portably efficient BLAS implementation, as well
-      as a few routines from LAPACK.
-    '';
-
-    maintainers = with stdenv.lib.maintainers; [ ttuegel ];
-  };
-}
diff --git a/pkgs/development/libraries/science/math/atlas/disable-timing-accuracy-check.patch b/pkgs/development/libraries/science/math/atlas/disable-timing-accuracy-check.patch
deleted file mode 100644
index ddacc742d142..000000000000
--- a/pkgs/development/libraries/science/math/atlas/disable-timing-accuracy-check.patch
+++ /dev/null
@@ -1,22 +0,0 @@
-diff -ubr ATLAS-orig/CONFIG/src/config.c ATLAS/CONFIG/src/config.c
---- ATLAS-orig/CONFIG/src/config.c	2013-02-06 11:23:47.078036878 +0100
-+++ ATLAS/CONFIG/src/config.c	2013-02-06 11:24:16.481120888 +0100
-@@ -711,17 +711,7 @@
- 
- int ProbeCPUThrottle(int verb, char *targarg, enum OSTYPE OS, enum ASMDIA asmb)
- {
--   int i, iret;
--   char *ln;
--   i = strlen(targarg) + 22 + 12;
--   ln = malloc(i*sizeof(char));
--   assert(ln);
--   sprintf(ln, "%s -O %d -s %d -t", targarg, OS, asmb);
--   iret = GetIntProbe(verb, ln, "arch", "CPU THROTTLE", 0);
--   free(ln);
--   if (iret) printf("CPU Throttling apparently enabled!\n");
--   else printf("Cannot detect CPU throttling.\n");
--   return(iret);
-+   return 0;
- }
- 
- char *NewAppendedString_SFLAG(char *old, char *flag, char *str)
diff --git a/pkgs/development/libraries/science/math/atlas/tmpdir.patch b/pkgs/development/libraries/science/math/atlas/tmpdir.patch
deleted file mode 100644
index be571b94300c..000000000000
--- a/pkgs/development/libraries/science/math/atlas/tmpdir.patch
+++ /dev/null
@@ -1,276 +0,0 @@
-diff --git a/CONFIG/ARCHS/negflt.c b/CONFIG/ARCHS/negflt.c
-index e5b7871..d45e387 100644
---- a/CONFIG/ARCHS/negflt.c
-+++ b/CONFIG/ARCHS/negflt.c
-@@ -239,7 +239,7 @@ void NegFile(char *fnam, int N, int *cols)
-    FILE *fpin, *fpout;
-    WORDS *wp0, *wp;
- 
--   tnam = tmpnam(NULL);
-+   tnam = tempnam(NULL, NULL);
-    fpin = fopen(fnam, "r");
-    assert(fpin);
-    fpout = fopen(tnam, "w");
-diff --git a/CONFIG/include/atlas_sys.h b/CONFIG/include/atlas_sys.h
-index b83a749..8902d38 100644
---- a/CONFIG/include/atlas_sys.h
-+++ b/CONFIG/include/atlas_sys.h
-@@ -216,12 +216,13 @@ static char *ATL_fgets_CWS(char *sout, int *plen, FILE *fpin)
- 
- static char *ATL_tmpnam(void)
- {
--   static char tnam[L_tmpnam];
-+   static char *tnam;
-    static char FirstTime=1;
-    if (FirstTime)
-    {
-       FirstTime = 0;
--      assert(tmpnam(tnam));
-+      tnam = tempnam(NULL, NULL);
-+      assert(tnam);
-    }
-    return(tnam);
- }
-diff --git a/bin/atlas_install.c b/bin/atlas_install.c
-index 2753cbf..e49cc3e 100644
---- a/bin/atlas_install.c
-+++ b/bin/atlas_install.c
-@@ -662,7 +662,8 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
- {
-    const char TR[2] = {'N','T'};
-    char prec[4] = {'d', 's', 'z', 'c'}, pre, upre, *typ;
--   char ln[1024], tnam[256], ln2[512], ln3[512], fnam[128];
-+   char ln[1024], ln2[512], ln3[512], fnam[128];
-+   char *tnam;
-    char *mulinst, *peakstr, *peakstr2;
-    int nprec=4;
-    int iL1, lat, muladd, maused, latuse, lbnreg;
-@@ -681,7 +682,7 @@ void GoToTown(int ARCHDEF, int L1DEF, int TuneLA)
-    fpsum = fopen("INSTALL_LOG/SUMMARY.LOG", "a");
-    ATL_Cassert(fpsum, "OPENING INSTALL_LOG/SUMMARY.LOG", NULL);
- 
--   ATL_Cassert(tmpnam(tnam), "GETTING TEMPFILE", NULL);
-+   ATL_Cassert((tnam = tempnam(NULL, NULL)), "GETTING TEMPFILE", NULL);
- 
-    if (L1DEF)
-    {
-diff --git a/bin/extract.c b/bin/extract.c
-index 7a5a926..53fb8bf 100644
---- a/bin/extract.c
-+++ b/bin/extract.c
-@@ -3378,7 +3378,7 @@ void PushProc0(EXTENV *EE, EXTPROC **basep, EXTPROC **myfuncs, char *ln)
-    pp->argnams = KillWord(wp, wp);
-    pp->nargs = CountWords(pp->argnams);
- 
--   cp = tmpnam(NULL);
-+   cp = tempnam(NULL, NULL);
-    if (cp == NULL) ExtErr(EE, "Out of tmpnams!!!");
-    i = Wstrlen(cp) + 1;
-    pp->FileNam = malloc(i*sizeof(char));
-diff --git a/include/atlas_mvtesttime.h b/include/atlas_mvtesttime.h
-index 9147fcb..ab6a99f 100644
---- a/include/atlas_mvtesttime.h
-+++ b/include/atlas_mvtesttime.h
-@@ -105,14 +105,15 @@ static int MVKernelFailsTest
-    char ln[4096];
-    char *sp;
-    int i, lda0;
--   static char outnam[L_tmpnam];
-+   static char* outnam;
-    static int FirstTime=1;
- 
-    if (FirstTime)
-    {
- 
-       FirstTime = 0;
--      assert(tmpnam(outnam));
-+      outnam = tempnam(NULL, NULL);
-+      assert(outnam);
-    }
- /*
-  * If the file is generated, call generator to create it
-@@ -221,14 +222,15 @@ static double TimeMVKernel
-    char ln[2048], resf[256], *sp;
-    double *dp, mf;
-    int i, align = pre2size(pre);
--   static char outnam[L_tmpnam];
-+   static char* outnam;
-    static int FirstTime=1;
- 
-    if (FirstTime)
-    {
- 
-       FirstTime = 0;
--      assert(tmpnam(outnam));
-+      outnam = tempnam(NULL, NULL);
-+      assert(outnam);
-    }
- /*
-  * If the file is generated, call generator to create it
-diff --git a/include/atlas_r1testtime.h b/include/atlas_r1testtime.h
-index b33213a..f27ee25 100644
---- a/include/atlas_r1testtime.h
-+++ b/include/atlas_r1testtime.h
-@@ -76,14 +76,15 @@ static int R1KernelFailsTest
-    char ln[4096];
-    char *sp;
-    int i, lda0;
--   static char outnam[L_tmpnam];
-+   static char* outnam;
-    static int FirstTime=1;
- 
-    if (FirstTime)
-    {
- 
-       FirstTime = 0;
--      assert(tmpnam(outnam));
-+      outnam = tempnam(NULL, NULL);
-+      assert(outnam);
-    }
- /*
-  * If the file is generated, call generator to create it
-@@ -187,14 +188,15 @@ static double TimeR1Kernel
-    char ln[2048], resf[256], *sp;
-    double *dp, mf;
-    int i, align = pre2size(pre);
--   static char outnam[L_tmpnam];
-+   static char* outnam;
-    static int FirstTime=1;
- 
-    if (FirstTime)
-    {
- 
-       FirstTime = 0;
--      assert(tmpnam(outnam));
-+      outnam = tempnam(NULL, NULL);
-+      assert(outnam);
-    }
- /*
-  * If the file is generated, call generator to create it
-diff --git a/include/atlas_r2testtime.h b/include/atlas_r2testtime.h
-index facc66d..c638dce 100644
---- a/include/atlas_r2testtime.h
-+++ b/include/atlas_r2testtime.h
-@@ -76,14 +76,15 @@ static int R2KernelFailsTest
-    char ln[4096];
-    char *sp;
-    int i, lda0;
--   static char outnam[L_tmpnam];
-+   static char* outnam;
-    static int FirstTime=1;
- 
-    if (FirstTime)
-    {
- 
-       FirstTime = 0;
--      assert(tmpnam(outnam));
-+      outnam = tempnam(NULL, NULL);
-+      assert(outnam);
-    }
- /*
-  * If the file is generated, call generator to create it
-@@ -187,14 +188,15 @@ static double TimeR2Kernel
-    char ln[2048], resf[256], *sp;
-    double *dp, mf;
-    int i, align = pre2size(pre);
--   static char outnam[L_tmpnam];
-+   static char* outnam;
-    static int FirstTime=1;
- 
-    if (FirstTime)
-    {
- 
-       FirstTime = 0;
--      assert(tmpnam(outnam));
-+      outnam = tempnam(NULL, NULL);
-+      assert(outnam);
-    }
- /*
-  * If the file is generated, call generator to create it
-diff --git a/include/atlas_sys.h b/include/atlas_sys.h
-index b83a749..b3f88d2 100644
---- a/include/atlas_sys.h
-+++ b/include/atlas_sys.h
-@@ -216,12 +216,13 @@ static char *ATL_fgets_CWS(char *sout, int *plen, FILE *fpin)
- 
- static char *ATL_tmpnam(void)
- {
--   static char tnam[L_tmpnam];
-+   static char* tnam;
-    static char FirstTime=1;
-    if (FirstTime)
-    {
-       FirstTime = 0;
--      assert(tmpnam(tnam));
-+      tnam = tempnam(NULL, NULL);
-+      assert(tnam);
-    }
-    return(tnam);
- }
-diff --git a/tune/blas/gemm/usercomb.c b/tune/blas/gemm/usercomb.c
-index 59a7cd4..eb3eb05 100644
---- a/tune/blas/gemm/usercomb.c
-+++ b/tune/blas/gemm/usercomb.c
-@@ -138,11 +138,13 @@ int GetUserCase(char pre, int icase, int *iflag, int *mb, int *nb, int *kb,
- 
- void CombineFiles(char *fout, int nfiles, char **fnams)
- {
--   char tnam[256], ln[512];
-+   char ln[512];
-+   char *tnam;
-    int i, j, n, nn;
-    FILE *fpout, *fpin;
- 
--   assert(tmpnam(tnam));
-+   tnam = tempnam(NULL, NULL);
-+   assert(tnam);
-    for (n=i=0; i < nfiles; i++) n += NumUserCases0(fnams[i]);
- 
-    fpout = fopen(tnam, "w");
-diff --git a/tune/blas/gemm/userflag.c b/tune/blas/gemm/userflag.c
-index c3983e4..b7dd70b 100644
---- a/tune/blas/gemm/userflag.c
-+++ b/tune/blas/gemm/userflag.c
-@@ -139,8 +139,8 @@ int GetUserCase(char pre, int icase, int *iflag, int *mb, int *nb, int *kb,
- 
- void GoGetThem(char *infile, char *outfile)
- {
--   char ln[512], ln2[512], tnam[256], MCC[256], MMFLAGS[256];
--   char *chkfile = "FlagCheck.c", *sp, *sp2;
-+   char ln[512], ln2[512], MCC[256], MMFLAGS[256];
-+   char *chkfile = "FlagCheck.c", *sp, *sp2, *tnam;
-    FILE *fpin, *fpout;
-    int i, j, n, nmin=0, good;
-    int wass;
-@@ -152,7 +152,8 @@ void GoGetThem(char *infile, char *outfile)
-    n = NumUserCases0(infile);
-    fpin = fopen(infile, "r");
-    assert(fpin);
--   assert(tmpnam(tnam));
-+   tnam = tempnam(NULL, NULL);
-+   assert(tnam);
-    fpout = fopen(tnam, "w");
-    assert(fpout);
-    assert(fgets(ln, 512, fpin));
-diff --git a/tune/sysinfo/emit_buildinfo.c b/tune/sysinfo/emit_buildinfo.c
-index 309c06a..3feaea7 100644
---- a/tune/sysinfo/emit_buildinfo.c
-+++ b/tune/sysinfo/emit_buildinfo.c
-@@ -41,14 +41,15 @@ static char SMCVERS[LNLEN], DMCVERS[LNLEN], SKCVERS[LNLEN], DKCVERS[LNLEN];
- static char UNAM[64], DATE[128];
- char *CmndResults(char *cmnd)
- {
--   static char tnam[128];
-+   static char* tnam;
-    static int FirstTime=1;
-    char ln[512];
- 
-    if (FirstTime)
-    {
-       FirstTime = 0;
--      assert(tmpnam(tnam));
-+      tnam = tempnam(NULL, NULL);
-+      assert(tnam);
-    }
-    sprintf(ln, "%s > %s\n", cmnd, tnam);
-    fprintf(stderr, "system: %s", ln);
diff --git a/pkgs/development/libraries/science/math/liblapack/default.nix b/pkgs/development/libraries/science/math/liblapack/default.nix
index e6af2251b1f1..38260f63d915 100644
--- a/pkgs/development/libraries/science/math/liblapack/default.nix
+++ b/pkgs/development/libraries/science/math/liblapack/default.nix
@@ -4,12 +4,9 @@
   gfortran,
   cmake,
   python2,
-  atlas ? null,
   shared ? false
 }:
 let
-  atlasMaybeShared = if atlas != null then atlas.override { inherit shared; }
-                     else null;
   usedLibExtension = if shared then ".so" else ".a";
   inherit (stdenv.lib) optional optionals;
   version = "3.8.0";
@@ -22,7 +19,6 @@ stdenv.mkDerivation rec {
     sha256 = "1xmwi2mqmipvg950gb0rhgprcps8gy8sjm8ic9rgy2qjlv22rcny";
   };
 
-  propagatedBuildInputs = [ atlasMaybeShared ];
   buildInputs = [ gfortran cmake ];
   nativeBuildInputs = [ python2 ];
 
@@ -30,15 +26,7 @@ stdenv.mkDerivation rec {
     "-DUSE_OPTIMIZED_BLAS=ON"
     "-DCMAKE_Fortran_FLAGS=-fPIC"
   ]
-  ++ (optionals (atlas != null) [
-    "-DBLAS_ATLAS_f77blas_LIBRARY=${atlasMaybeShared}/lib/libf77blas${usedLibExtension}"
-    "-DBLAS_ATLAS_atlas_LIBRARY=${atlasMaybeShared}/lib/libatlas${usedLibExtension}"
-  ])
-  ++ (optional shared "-DBUILD_SHARED_LIBS=ON")
-  # If we're on darwin, CMake will automatically detect impure paths. This switch
-  # prevents that.
-  ++ (optional stdenv.isDarwin "-DCMAKE_OSX_SYSROOT:PATH=''")
-  ;
+  ++ (optional shared "-DBUILD_SHARED_LIBS=ON");
 
   doCheck = ! shared;
 
@@ -48,10 +36,6 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
-  passthru = {
-    blas = atlas;
-  };
-
   meta = with stdenv.lib; {
     inherit version;
     description = "Linear Algebra PACKage";
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 3cd0cc4887a8..937125ce628c 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -16101,9 +16101,7 @@ with pkgs;
 
   cpp_ethereum = callPackage ../applications/misc/cpp-ethereum { };
 
-  csdp = callPackage ../applications/science/math/csdp {
-    liblapack = liblapackWithoutAtlas;
-  };
+  csdp = callPackage ../applications/science/math/csdp { };
 
   ctop = callPackage ../tools/system/ctop { };
 
@@ -21171,16 +21169,6 @@ with pkgs;
 
   arpack = callPackage ../development/libraries/science/math/arpack { };
 
-  atlas = callPackage ../development/libraries/science/math/atlas {
-    # The build process measures CPU capabilities and optimizes the
-    # library to perform best on that particular machine. That is a
-    # great feature, but it's of limited use with pre-built binaries
-    # coming from a central build farm.
-    tolerateCpuTimingInaccuracy = true;
-    liblapack = liblapackWithoutAtlas;
-    withLapack = false;
-  };
-
   blas = callPackage ../development/libraries/science/math/blas { };
 
   brial = callPackage ../development/libraries/science/math/brial { };
@@ -21203,13 +21191,7 @@ with pkgs;
 
   libhomfly = callPackage ../development/libraries/science/math/libhomfly { };
 
-  # We have essentially 4 permutations of liblapack: version 3.4.1 or 3.5.0,
-  # and with or without atlas as a dependency. The default `liblapack` is 3.4.1
-  # with atlas. Atlas, when built with liblapack as a dependency, uses 3.5.0
-  # without atlas. Etc.
   liblapack = callPackage ../development/libraries/science/math/liblapack {};
-  liblapackWithoutAtlas = liblapackWithAtlas.override { atlas = null; };
-  liblapackWithAtlas = liblapack;
 
   liblbfgs = callPackage ../development/libraries/science/math/liblbfgs { };
 
@@ -21276,9 +21258,7 @@ with pkgs;
 
   QuadProgpp = callPackage ../development/libraries/science/math/QuadProgpp { };
 
-  scs = callPackage ../development/libraries/science/math/scs {
-    liblapack = liblapackWithoutAtlas;
-  };
+  scs = callPackage ../development/libraries/science/math/scs { };
 
   sage = callPackage ../applications/science/math/sage {
     nixpkgs = pkgs;
diff --git a/pkgs/top-level/release-small.nix b/pkgs/top-level/release-small.nix
index 7f574574d8d7..01cbc004b8f0 100644
--- a/pkgs/top-level/release-small.nix
+++ b/pkgs/top-level/release-small.nix
@@ -18,7 +18,6 @@ with import ./release-lib.nix { inherit supportedSystems; };
 
   aspell = all;
   at = linux;
-  atlas = linux;
   autoconf = all;
   automake = all;
   avahi = unix; # Cygwin builds fail

From 95486ca306fc72d23ed4568b91afe35b6af9fab1 Mon Sep 17 00:00:00 2001
From: Sarah Brofeldt <sbrofeldt@gmail.com>
Date: Mon, 5 Nov 2018 08:58:08 +0000
Subject: [PATCH 0504/1129] Revert "NixOS tests: Wait for shell for 10x longer
 (50m)"

This reverts commit 9bc10e12916979c5c620be5b521b9218a0077cba.
---
 nixos/lib/test-driver/Machine.pm | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/nixos/lib/test-driver/Machine.pm b/nixos/lib/test-driver/Machine.pm
index abcc1c50d4d8..a00fe25c2b8e 100644
--- a/nixos/lib/test-driver/Machine.pm
+++ b/nixos/lib/test-driver/Machine.pm
@@ -250,8 +250,7 @@ sub connect {
         $self->start;
 
         local $SIG{ALRM} = sub { die "timed out waiting for the VM to connect\n"; };
-        # 50 minutes -- increased as a test, see #49441
-        alarm 3000;
+        alarm 300;
         readline $self->{socket} or die "the VM quit before connecting\n";
         alarm 0;
 

From 4f45edbd9aa4a0c3589de5f01c81185f00362c40 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Mon, 5 Nov 2018 10:02:54 +0100
Subject: [PATCH 0505/1129] haskell-cpython: revert "set to null"

This reverts commit 6a0b1b13b6119e90fce8b024fef99fd27bb883b6. Please don't null
out the entire package just because its build is broken at the moment. If you
want to prevent users from compiling cpython, then haskell.lib.markBroken (or,
even better: markBrokenVersion) are the way to do it.
---
 pkgs/development/haskell-modules/configuration-common.nix | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix
index 1a6d38ba5d8d..56ffd6ee54ee 100644
--- a/pkgs/development/haskell-modules/configuration-common.nix
+++ b/pkgs/development/haskell-modules/configuration-common.nix
@@ -893,9 +893,6 @@ self: super: {
   # https://github.com/aisamanra/config-ini/issues/12
   config-ini = dontCheck super.config-ini;
 
-  # We've remove cpython 3.4 from nixpkgs
-  cpython = null;
-
   # doctest >=0.9 && <0.12
   genvalidity-property = doJailbreak super.genvalidity-property;
   path = dontCheck super.path;

From b854f78991d8bbdf5801984bd17989f89c1c30a5 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Mon, 5 Nov 2018 10:27:57 +0100
Subject: [PATCH 0506/1129] ghc-8.4.4: disable integer-simple variant build

The build fails: https://hydra.nixos.org/build/83750830
---
 pkgs/top-level/haskell-packages.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/top-level/haskell-packages.nix b/pkgs/top-level/haskell-packages.nix
index 13250ea8814b..87adff4bf133 100644
--- a/pkgs/top-level/haskell-packages.nix
+++ b/pkgs/top-level/haskell-packages.nix
@@ -7,6 +7,7 @@ let
   integerSimpleExcludes = [
     "ghc7103Binary"
     "ghc821Binary"
+    "ghc844"
     "ghcjs"
     "ghcjs82"
     "ghcjs84"

From 20078fd5b2ec8af70b039515d7bd6deaea6d0c31 Mon Sep 17 00:00:00 2001
From: Gabriel Ebner <gebner@gebner.org>
Date: Mon, 5 Nov 2018 10:41:38 +0100
Subject: [PATCH 0507/1129] nixos/rngd: do not pass --version flag

---
 nixos/modules/security/rngd.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nixos/modules/security/rngd.nix b/nixos/modules/security/rngd.nix
index 63e00b548120..a54ef2e6fcad 100644
--- a/nixos/modules/security/rngd.nix
+++ b/nixos/modules/security/rngd.nix
@@ -29,7 +29,7 @@ with lib;
 
       description = "Hardware RNG Entropy Gatherer Daemon";
 
-      serviceConfig.ExecStart = "${pkgs.rng-tools}/sbin/rngd -f -v";
+      serviceConfig.ExecStart = "${pkgs.rng-tools}/sbin/rngd -f";
     };
   };
 }

From fd1ffd0e0d8a701616cd51c33717f6ad4fdbd508 Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Mon, 5 Nov 2018 12:22:11 +0100
Subject: [PATCH 0508/1129] SDL2: include cf-private on darwin

It's not included implicitly by the frameworks anymore.

    Undefined symbols for architecture x86_64:
      "_NSDefaultRunLoopMode", referenced from:
          _Cocoa_PumpEvents in SDL_cocoaevents.o
      "_NSURLIsAliasFileKey", referenced from:
          -[SDLWindow performDragOperation:] in SDL_cocoawindow.o
      "_OBJC_CLASS_$_NSArray", referenced from:
          objc-class-ref in SDL_cocoaclipboard.o
          objc-class-ref in SDL_cocoakeyboard.o
          objc-class-ref in SDL_cocoawindow.o
      "_OBJC_CLASS_$_NSData", referenced from:
          objc-class-ref in SDL_cocoamouse.o
      "_OBJC_CLASS_$_NSDate", referenced from:
          objc-class-ref in SDL_cocoaevents.o
      "_OBJC_CLASS_$_NSDictionary", referenced from:
          objc-class-ref in SDL_cocoaevents.o
      "_OBJC_CLASS_$_NSMutableArray", referenced from:
          objc-class-ref in SDL_cocoawindow.o
      "_OBJC_CLASS_$_NSURL", referenced from:
          objc-class-ref in SDL_cocoawindow.o
      "_OBJC_CLASS_$_NSUserDefaults", referenced from:
          objc-class-ref in SDL_cocoaevents.o
      "_OBJC_EHTYPE_$_NSException", referenced from:
          GCC_except_table67 in SDL_cocoawindow.o
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/development/libraries/SDL2/default.nix | 8 ++++++--
 pkgs/top-level/all-packages.nix             | 1 +
 2 files changed, 7 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/SDL2/default.nix b/pkgs/development/libraries/SDL2/default.nix
index 7d8f5b2caee6..4b358f68a117 100644
--- a/pkgs/development/libraries/SDL2/default.nix
+++ b/pkgs/development/libraries/SDL2/default.nix
@@ -8,7 +8,7 @@
 , ibusSupport ? false, ibus
 , pulseaudioSupport ? true, libpulseaudio
 , AudioUnit, Cocoa, CoreAudio, CoreServices, ForceFeedback, OpenGL
-, audiofile, libiconv
+, audiofile, cf-private, libiconv
 }:
 
 # NOTE: When editing this expression see if the same change applies to
@@ -54,7 +54,11 @@ stdenv.mkDerivation rec {
   buildInputs = [ audiofile libiconv ]
     ++ dlopenBuildInputs
     ++ optional  ibusSupport ibus
-    ++ optionals stdenv.isDarwin [ AudioUnit Cocoa CoreAudio CoreServices ForceFeedback OpenGL ];
+    ++ optionals stdenv.isDarwin [
+      AudioUnit Cocoa CoreAudio CoreServices ForceFeedback OpenGL
+      # Needed for NSDefaultRunLoopMode symbols.
+      cf-private
+    ];
 
   # /build/SDL2-2.0.7/src/video/wayland/SDL_waylandevents.c:41:10: fatal error:
   #   pointer-constraints-unstable-v1-client-protocol.h: No such file or directory
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 4e06c6aece52..153336c08aa1 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -12152,6 +12152,7 @@ with pkgs;
     waylandSupport = stdenv.isLinux;
     udevSupport = stdenv.isLinux;
     pulseaudioSupport = config.pulseaudio or stdenv.isLinux;
+    inherit (darwin) cf-private;
     inherit (darwin.apple_sdk.frameworks) AudioUnit Cocoa CoreAudio CoreServices ForceFeedback OpenGL;
   };
 

From 7edfded9c3936f50fb227aabc6423f2736f07eae Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Mon, 5 Nov 2018 12:47:14 +0100
Subject: [PATCH 0509/1129] SDL: include cf-private on darwin

It's not included implicitly by the frameworks anymore.

    Undefined symbols for architecture x86_64:
      "_NSDefaultRunLoopMode", referenced from:
          _QZ_PumpEvents in SDL_QuartzEvents.o
      "_OBJC_CLASS_$_NSArray", referenced from:
          objc-class-ref in SDL_QuartzEvents.o
      "_OBJC_CLASS_$_NSDate", referenced from:
          objc-class-ref in SDL_QuartzEvents.o
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/development/libraries/SDL/default.nix | 7 ++++++-
 pkgs/top-level/all-packages.nix            | 1 +
 2 files changed, 7 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/libraries/SDL/default.nix b/pkgs/development/libraries/SDL/default.nix
index 7bbb1a5e1c92..08a52096d4b1 100644
--- a/pkgs/development/libraries/SDL/default.nix
+++ b/pkgs/development/libraries/SDL/default.nix
@@ -4,6 +4,7 @@
 , x11Support ? stdenv.hostPlatform == stdenv.buildPlatform, libXext, libICE, libXrandr
 , pulseaudioSupport ? true, libpulseaudio
 , OpenGL, CoreAudio, CoreServices, AudioUnit, Kernel, Cocoa
+, cf-private
 }:
 
 # NOTE: When editing this expression see if the same change applies to
@@ -41,7 +42,11 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ ]
     ++ optional (!stdenv.hostPlatform.isMinGW) audiofile
-    ++ optionals stdenv.isDarwin [ AudioUnit CoreAudio CoreServices Kernel OpenGL ];
+    ++ optionals stdenv.isDarwin [
+      AudioUnit CoreAudio CoreServices Kernel OpenGL
+      # Needed for NSDefaultRunLoopMode symbols.
+      cf-private
+    ];
 
   configureFlags = [
     "--disable-oss"
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 153336c08aa1..0c61e47ce575 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -12126,6 +12126,7 @@ with pkgs;
     alsaSupport = stdenv.isLinux;
     x11Support = !stdenv.isCygwin;
     pulseaudioSupport = config.pulseaudio or stdenv.isLinux;
+    inherit (darwin) cf-private;
     inherit (darwin.apple_sdk.frameworks) OpenGL CoreAudio CoreServices AudioUnit Kernel Cocoa;
   };
 

From 4745250bd35b2cbdee248abc0aa60876c8f71ae5 Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Mon, 5 Nov 2018 07:09:41 -0500
Subject: [PATCH 0510/1129] linux: 4.19-rc8 -> 4.20-rc1

---
 pkgs/os-specific/linux/kernel/linux-testing.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/os-specific/linux/kernel/linux-testing.nix b/pkgs/os-specific/linux/kernel/linux-testing.nix
index f866d858eaeb..ad7e44ed0a17 100644
--- a/pkgs/os-specific/linux/kernel/linux-testing.nix
+++ b/pkgs/os-specific/linux/kernel/linux-testing.nix
@@ -1,13 +1,13 @@
 { stdenv, buildPackages, fetchurl, perl, buildLinux, libelf, utillinux, ... } @ args:
 
 buildLinux (args // rec {
-  version = "4.19-rc8";
-  modDirVersion = "4.19.0-rc8";
-  extraMeta.branch = "4.19";
+  version = "4.20-rc1";
+  modDirVersion = "4.20.0-rc1";
+  extraMeta.branch = "4.20";
 
   src = fetchurl {
     url = "https://git.kernel.org/torvalds/t/linux-${version}.tar.gz";
-    sha256 = "1xw8grzn4i4b2vprfwi4p4003n7rr9725dbiqyrl8w1pm11jwpin";
+    sha256 = "0nf3rk8768740smkbf2ilsm40p1pnnmrpf53pmc5k1dkj4kgc0pb";
   };
 
   # Should the testing kernels ever be built on Hydra?

From dfbf6213b4d0f7dd8b44899b18efe6bf3b3b8b6d Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Fri, 19 Oct 2018 15:46:04 +0800
Subject: [PATCH 0511/1129] pythonPackages.snapcast: init at 2.0.9

---
 .../python-modules/snapcast/default.nix       | 28 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 30 insertions(+)
 create mode 100644 pkgs/development/python-modules/snapcast/default.nix

diff --git a/pkgs/development/python-modules/snapcast/default.nix b/pkgs/development/python-modules/snapcast/default.nix
new file mode 100644
index 000000000000..bb1375417911
--- /dev/null
+++ b/pkgs/development/python-modules/snapcast/default.nix
@@ -0,0 +1,28 @@
+{ stdenv, buildPythonPackage, fetchPypi, isPy3k, pytest
+, construct }:
+
+buildPythonPackage rec {
+  pname = "snapcast";
+  version = "2.0.9";
+
+  disabled = !isPy3k;
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0hlfcg0qdfavjzhxz4v2spjkj6440a1254wrncfkfkyff6rv9x3s";
+  };
+
+  checkInputs = [ pytest ];
+
+  propagatedBuildInputs = [ construct ];
+
+  # no checks from Pypi - https://github.com/happyleavesaoc/python-snapcast/issues/23
+  doCheck = false;
+
+  meta = with stdenv.lib; {
+    description = "Control Snapcast, a multi-room synchronous audio solution";
+    homepage = https://github.com/happyleavesaoc/python-snapcast/;
+    license = licenses.mit;
+    maintainers = with maintainers; [ peterhoeg ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 83f6aeda7f85..9f307955d3fa 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -642,6 +642,8 @@ in {
 
   slicerator = callPackage ../development/python-modules/slicerator { };
 
+  snapcast = callPackage ../development/python-modules/snapcast { };
+
   spglib = callPackage ../development/python-modules/spglib { };
 
   statistics = callPackage ../development/python-modules/statistics { };

From 3f1957fefe4793eebd4b585b7d2ad18986ffaeb1 Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Fri, 19 Oct 2018 15:47:09 +0800
Subject: [PATCH 0512/1129] hass: support snapcast

---
 pkgs/servers/home-assistant/component-packages.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/servers/home-assistant/component-packages.nix b/pkgs/servers/home-assistant/component-packages.nix
index f1ee1eda95da..2516d6a17a86 100644
--- a/pkgs/servers/home-assistant/component-packages.nix
+++ b/pkgs/servers/home-assistant/component-packages.nix
@@ -664,7 +664,7 @@
     "media_player.russound_rnet" = ps: with ps; [  ];
     "media_player.samsungtv" = ps: with ps; [ wakeonlan ];
     "media_player.sisyphus" = ps: with ps; [  ];
-    "media_player.snapcast" = ps: with ps; [  ];
+    "media_player.snapcast" = ps: with ps; [ snapcast ];
     "media_player.songpal" = ps: with ps; [  ];
     "media_player.sonos" = ps: with ps; [  ];
     "media_player.soundtouch" = ps: with ps; [ libsoundtouch ];

From ff060e74b830465cdfad73f6ff0aa39f8f1d5b05 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Mon, 5 Nov 2018 14:03:43 +0100
Subject: [PATCH 0513/1129] haskell-cpython: don't bind the obsolete name
 "python34"

Fixes the evaluation error introduced by 4f45edbd9aa4a0c3589de5f01c81185f00362c40.
---
 pkgs/development/haskell-modules/hackage-packages.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix
index 34c638217563..2583fa1c449a 100644
--- a/pkgs/development/haskell-modules/hackage-packages.nix
+++ b/pkgs/development/haskell-modules/hackage-packages.nix
@@ -54425,7 +54425,7 @@ self: {
        libraryToolDepends = [ c2hs ];
        description = "Bindings for libpython";
        license = stdenv.lib.licenses.gpl3;
-     }) {inherit (pkgs) python34;};
+     }) {python34 = null;};
 
   "cql" = callPackage
     ({ mkDerivation, base, bytestring, cereal, containers, Decimal

From 3bcdb3945ac63d756f3fde30220e1b81aff910eb Mon Sep 17 00:00:00 2001
From: Renato Alves <alves.rjc@gmail.com>
Date: Sat, 3 Nov 2018 17:26:28 +0100
Subject: [PATCH 0514/1129] ghc-8.2.1-binary: Patch shebang causing failures in
 Centos 6

---
 pkgs/development/compilers/ghc/8.2.1-binary.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/development/compilers/ghc/8.2.1-binary.nix b/pkgs/development/compilers/ghc/8.2.1-binary.nix
index 6caeaf20f64c..626c0d8ca9c2 100644
--- a/pkgs/development/compilers/ghc/8.2.1-binary.nix
+++ b/pkgs/development/compilers/ghc/8.2.1-binary.nix
@@ -75,6 +75,7 @@ stdenv.mkDerivation rec {
     # Some scripts used during the build need to have their shebangs patched
     ''
       patchShebangs ghc-${version}/utils/
+      patchShebangs ghc-${version}/configure
     '' +
 
     # Strip is harmful, see also below. It's important that this happens

From 68b1d626fbf97a224cff1b5f7c339fcbc2d3724d Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Mon, 5 Nov 2018 10:23:08 +0100
Subject: [PATCH 0515/1129] hackage2nix: disable failing Hydra builds

---
 .../configuration-hackage2nix.yaml            | 54 +++++++++++++++++++
 1 file changed, 54 insertions(+)

diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
index aa96bebc21b8..0a2770cc4c01 100644
--- a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
+++ b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
@@ -2886,6 +2886,7 @@ dont-distribute-packages:
   arpa:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   arpack:                                       [ i686-linux, x86_64-linux, x86_64-darwin ]
   array-forth:                                  [ i686-linux, x86_64-linux, x86_64-darwin ]
+  arraylist:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
   ArrayRef:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   arrow-improve:                                [ i686-linux, x86_64-linux, x86_64-darwin ]
   arrowapply-utils:                             [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -3032,6 +3033,7 @@ dont-distribute-packages:
   barrie:                                       [ i686-linux, x86_64-linux, x86_64-darwin ]
   barrier-monad:                                [ i686-linux, x86_64-linux, x86_64-darwin ]
   barrier:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
+  base-compat-migrate:                            [ i686-linux, x86_64-linux, x86_64-darwin ]
   base-feature-macros:                          [ i686-linux, x86_64-linux, x86_64-darwin ]
   base-generics:                                [ i686-linux, x86_64-linux, x86_64-darwin ]
   base-io-access:                               [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -3055,6 +3057,7 @@ dont-distribute-packages:
   beam-th:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
   beam:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   beamable:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
+  bearriver:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
   beautifHOL:                                   [ i686-linux, x86_64-linux, x86_64-darwin ]
   bed-and-breakfast:                            [ i686-linux, x86_64-linux, x86_64-darwin ]
   beeminder-api:                                [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -3361,6 +3364,7 @@ dont-distribute-packages:
   campfire:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   canon:                                        [ i686-linux, x86_64-linux, x86_64-darwin ]
   canonical-filepath:                           [ i686-linux, x86_64-linux, x86_64-darwin ]
+  canonical-json:                                 [ i686-linux, x86_64-linux, x86_64-darwin ]
   canteven-http:                                [ i686-linux, x86_64-linux, x86_64-darwin ]
   canteven-listen-http:                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   canteven-log:                                 [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -3614,6 +3618,7 @@ dont-distribute-packages:
   combinatorial-problems:                       [ i686-linux, x86_64-linux, x86_64-darwin ]
   Combinatorrent:                               [ i686-linux, x86_64-linux, x86_64-darwin ]
   combobuffer:                                  [ i686-linux, x86_64-linux, x86_64-darwin ]
+  comfort-array:                                  [ i686-linux, x86_64-linux, x86_64-darwin ]
   comic:                                        [ i686-linux, x86_64-linux, x86_64-darwin ]
   Command:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
   commander:                                    [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -3680,6 +3685,7 @@ dont-distribute-packages:
   conduit-tokenize-attoparsec:                  [ i686-linux, x86_64-linux, x86_64-darwin ]
   conduit-zstd:                                 [ i686-linux, x86_64-linux, x86_64-darwin ]
   conf:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
+  confcrypt:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
   conffmt:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
   confide:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
   config-parser:                                [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -3838,6 +3844,7 @@ dont-distribute-packages:
   ctpl:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   cube:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   cubical:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
+  cuboid:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   cudd:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   currency-convert:                             [ i686-linux, x86_64-linux, x86_64-darwin ]
   curry-base:                                   [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -4247,6 +4254,7 @@ dont-distribute-packages:
   ehaskell:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   ehs:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
   eibd-client-simple:                           [ i686-linux, x86_64-linux, x86_64-darwin ]
+  eigen:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
   Eight-Ball-Pool-Hack-Cheats:                  [ i686-linux, x86_64-linux, x86_64-darwin ]
   either-list-functions:                        [ i686-linux, x86_64-linux, x86_64-darwin ]
   EitherT:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -4297,6 +4305,7 @@ dont-distribute-packages:
   enummapmap:                                   [ i686-linux, x86_64-linux, x86_64-darwin ]
   enummapset-th:                                [ i686-linux, x86_64-linux, x86_64-darwin ]
   env-parser:                                   [ i686-linux, x86_64-linux, x86_64-darwin ]
+  envstatus:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
   epanet-haskell:                               [ i686-linux, x86_64-linux, x86_64-darwin ]
   epass:                                        [ i686-linux, x86_64-linux, x86_64-darwin ]
   epic:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -4368,6 +4377,7 @@ dont-distribute-packages:
   execs:                                        [ i686-linux, x86_64-linux, x86_64-darwin ]
   executor:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   exference:                                    [ i686-linux, x86_64-linux, x86_64-darwin ]
+  exhaustive:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   exherbo-cabal:                                [ i686-linux, x86_64-linux, x86_64-darwin ]
   exif:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   exinst-aeson:                                 [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -4897,6 +4907,7 @@ dont-distribute-packages:
   goatee-gtk:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   goatee:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   gochan:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
+  godot-haskell:                                  [ i686-linux, x86_64-linux, x86_64-darwin ]
   gofer-prelude:                                  [ i686-linux, x86_64-linux, x86_64-darwin ]
   gogol-adexchange-buyer:                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   gogol-adexchange-seller:                        [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -5352,6 +5363,7 @@ dont-distribute-packages:
   haskell-course-preludes:                        [ i686-linux, x86_64-linux, x86_64-darwin ]
   haskell-dap:                                    [ i686-linux, x86_64-linux, x86_64-darwin ]
   haskell-docs:                                   [ i686-linux, x86_64-linux, x86_64-darwin ]
+  haskell-eigen-util:                             [ i686-linux, x86_64-linux, x86_64-darwin ]
   haskell-formatter:                              [ i686-linux, x86_64-linux, x86_64-darwin ]
   haskell-ftp:                                    [ i686-linux, x86_64-linux, x86_64-darwin ]
   haskell-generate:                               [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -5447,6 +5459,14 @@ dont-distribute-packages:
   haskore:                                        [ i686-linux, x86_64-linux, x86_64-darwin ]
   HaskRel:                                        [ i686-linux, x86_64-linux, x86_64-darwin ]
   hasktags:                                       [ i686-linux, x86_64-linux, x86_64-darwin ]
+  hasktorch-ffi-th:                               [ i686-linux, x86_64-linux, x86_64-darwin ]
+  hasktorch-ffi-thc:                              [ i686-linux, x86_64-linux, x86_64-darwin ]
+  hasktorch-indef:                                [ i686-linux, x86_64-linux, x86_64-darwin ]
+  hasktorch-signatures-partial:                   [ i686-linux, x86_64-linux, x86_64-darwin ]
+  hasktorch-signatures-support:                   [ i686-linux, x86_64-linux, x86_64-darwin ]
+  hasktorch-signatures:                           [ i686-linux, x86_64-linux, x86_64-darwin ]
+  hasktorch-zoo:                                  [ i686-linux, x86_64-linux, x86_64-darwin ]
+  hasktorch:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
   haskus-binary:                                  [ i686-linux, x86_64-linux, x86_64-darwin ]
   haskus-system-build:                            [ i686-linux, x86_64-linux, x86_64-darwin ]
   haskus-utils:                                   [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -5480,6 +5500,7 @@ dont-distribute-packages:
   HaTeX-meta:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   HaTeX-qq:                                       [ i686-linux, x86_64-linux, x86_64-darwin ]
   hats:                                           [ i686-linux, x86_64-linux, x86_64-darwin ]
+  hatt:                                           [ i686-linux, x86_64-linux, x86_64-darwin ]
   haverer:                                        [ i686-linux, x86_64-linux, x86_64-darwin ]
   HaVSA:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
   hawitter:                                       [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -5591,6 +5612,7 @@ dont-distribute-packages:
   Hermes:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   hermit-syb:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   hermit:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
+  herms:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
   herringbone-embed:                              [ i686-linux, x86_64-linux, x86_64-darwin ]
   herringbone-wai:                                [ i686-linux, x86_64-linux, x86_64-darwin ]
   herringbone:                                    [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -5614,6 +5636,7 @@ dont-distribute-packages:
   hexquote:                                       [ i686-linux, x86_64-linux, x86_64-darwin ]
   hext:                                           [ i686-linux, x86_64-linux, x86_64-darwin ]
   heyefi:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
+  heyting-algebras:                               [ i686-linux, x86_64-linux, x86_64-darwin ]
   hF2:                                            [ i686-linux, x86_64-linux, x86_64-darwin ]
   hfann:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
   hfd:                                            [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -5923,6 +5946,7 @@ dont-distribute-packages:
   hsbencher-codespeed:                            [ i686-linux, x86_64-linux, x86_64-darwin ]
   hsbencher-fusion:                               [ i686-linux, x86_64-linux, x86_64-darwin ]
   hsbencher:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
+  hsc2hs:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   hsc3-auditor:                                   [ i686-linux, x86_64-linux, x86_64-darwin ]
   hsc3-cairo:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   hsc3-data:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -6501,6 +6525,8 @@ dont-distribute-packages:
   KiCS-prophecy:                                  [ i686-linux, x86_64-linux, x86_64-darwin ]
   KiCS:                                           [ i686-linux, x86_64-linux, x86_64-darwin ]
   kif-parser:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
+  kind-apply:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
+  kind-generics:                                  [ i686-linux, x86_64-linux, x86_64-darwin ]
   kit:                                            [ i686-linux, x86_64-linux, x86_64-darwin ]
   kmeans-par:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   kmeans-vector:                                  [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -6652,6 +6678,7 @@ dont-distribute-packages:
   lens-time:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
   lens-toml-parser:                               [ i686-linux, x86_64-linux, x86_64-darwin ]
   lens-tutorial:                                  [ i686-linux, x86_64-linux, x86_64-darwin ]
+  lens-typelevel:                                 [ i686-linux, x86_64-linux, x86_64-darwin ]
   lensref:                                        [ i686-linux, x86_64-linux, x86_64-darwin ]
   level-monad:                                    [ i686-linux, x86_64-linux, x86_64-darwin ]
   Level0:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -6694,6 +6721,7 @@ dont-distribute-packages:
   life-sync:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
   lifted-base-tf:                                 [ i686-linux, x86_64-linux, x86_64-darwin ]
   lifted-protolude:                               [ i686-linux, x86_64-linux, x86_64-darwin ]
+  lifted-stm:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   lifter:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   ligature:                                       [ i686-linux, x86_64-linux, x86_64-darwin ]
   lightning-haskell:                              [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -6995,6 +7023,8 @@ dont-distribute-packages:
   MetaHDBC:                                       [ i686-linux, x86_64-linux, x86_64-darwin ]
   MetaObject:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   metaplug:                                       [ i686-linux, x86_64-linux, x86_64-darwin ]
+  metar-http:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
+  metar:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
   metric:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   Metrics:                                        [ i686-linux, x86_64-linux, x86_64-darwin ]
   metricsd-client:                                [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -7134,6 +7164,7 @@ dont-distribute-packages:
   monoid-subclasses:                              [ i686-linux, x86_64-linux, x86_64-darwin ]
   monoidplus:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   monoids:                                        [ i686-linux, x86_64-linux, x86_64-darwin ]
+  monopati:                                       [ i686-linux, x86_64-linux, x86_64-darwin ]
   monte-carlo:                                    [ i686-linux, x86_64-linux, x86_64-darwin ]
   monzo:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
   moo:                                            [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -7153,6 +7184,7 @@ dont-distribute-packages:
   mp3decoder:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   mp:                                             [ i686-linux, x86_64-linux, x86_64-darwin ]
   mpdmate:                                        [ i686-linux, x86_64-linux, x86_64-darwin ]
+  mpi-hs:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   mpppc:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
   mpretty:                                        [ i686-linux, x86_64-linux, x86_64-darwin ]
   mpris:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -7672,6 +7704,7 @@ dont-distribute-packages:
   persistent-qq:                                  [ i686-linux, x86_64-linux, x86_64-darwin ]
   persistent-ratelimit:                           [ i686-linux, x86_64-linux, x86_64-darwin ]
   persistent-relational-record:                   [ i686-linux, x86_64-linux, x86_64-darwin ]
+  persistent-template-classy:                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   persistent-vector:                              [ i686-linux, x86_64-linux, x86_64-darwin ]
   persistent-zookeeper:                           [ i686-linux, x86_64-linux, x86_64-darwin ]
   persona-idp:                                    [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -7755,6 +7788,7 @@ dont-distribute-packages:
   plan-b:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   planar-graph:                                   [ i686-linux, x86_64-linux, x86_64-darwin ]
   planb-token-introspection:                      [ i686-linux, x86_64-linux, x86_64-darwin ]
+  planet-mitchell-test:                           [ i686-linux, x86_64-linux, x86_64-darwin ]
   planet-mitchell:                                [ i686-linux, x86_64-linux, x86_64-darwin ]
   plankton:                                       [ i686-linux, x86_64-linux, x86_64-darwin ]
   plat:                                           [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -8341,6 +8375,7 @@ dont-distribute-packages:
   rosmsg-bin:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   rosmsg:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   rosso:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
+  rounded:                                        [ i686-linux, x86_64-linux, x86_64-darwin ]
   rounding:                                       [ i686-linux, x86_64-linux, x86_64-darwin ]
   roundtrip-aeson:                                [ i686-linux, x86_64-linux, x86_64-darwin ]
   roundtrip-string:                               [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -8543,6 +8578,7 @@ dont-distribute-packages:
   servant-github:                                 [ i686-linux, x86_64-linux, x86_64-darwin ]
   servant-haxl-client:                            [ i686-linux, x86_64-linux, x86_64-darwin ]
   servant-hmac-auth:                              [ i686-linux, x86_64-linux, x86_64-darwin ]
+  servant-http2-client:                           [ i686-linux, x86_64-linux, x86_64-darwin ]
   servant-iCalendar:                              [ i686-linux, x86_64-linux, x86_64-darwin ]
   servant-jquery:                                 [ i686-linux, x86_64-linux, x86_64-darwin ]
   servant-js:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -8562,6 +8598,8 @@ dont-distribute-packages:
   servant-snap:                                   [ i686-linux, x86_64-linux, x86_64-darwin ]
   servant-streaming-client:                       [ i686-linux, x86_64-linux, x86_64-darwin ]
   servant-subscriber:                             [ i686-linux, x86_64-linux, x86_64-darwin ]
+  servant-swagger-ui-jensoleg:                    [ i686-linux, x86_64-linux, x86_64-darwin ]
+  servant-swagger-ui-redoc:                       [ i686-linux, x86_64-linux, x86_64-darwin ]
   servant-xml:                                    [ i686-linux, x86_64-linux, x86_64-darwin ]
   servant-zeppelin-client:                        [ i686-linux, x86_64-linux, x86_64-darwin ]
   servant-zeppelin-server:                        [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -8610,6 +8648,7 @@ dont-distribute-packages:
   shaker:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   shakespeare-babel:                              [ i686-linux, x86_64-linux, x86_64-darwin ]
   shakespeare-sass:                               [ i686-linux, x86_64-linux, x86_64-darwin ]
+  shannon-fano:                                   [ i686-linux, x86_64-linux, x86_64-darwin ]
   shapely-data:                                   [ i686-linux, x86_64-linux, x86_64-darwin ]
   shapes-demo:                                    [ i686-linux, x86_64-linux, x86_64-darwin ]
   shared-buffer:                                  [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -8628,6 +8667,7 @@ dont-distribute-packages:
   shellish:                                       [ i686-linux, x86_64-linux, x86_64-darwin ]
   shellmate-extras:                               [ i686-linux, x86_64-linux, x86_64-darwin ]
   shellmate:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
+  shh:                                            [ i686-linux, x86_64-linux, x86_64-darwin ]
   shikensu:                                       [ i686-linux, x86_64-linux, x86_64-darwin ]
   shivers-cfg:                                    [ i686-linux, x86_64-linux, x86_64-darwin ]
   shoap:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -8648,6 +8688,7 @@ dont-distribute-packages:
   simd:                                           [ i686-linux, x86_64-linux, x86_64-darwin ]
   simgi:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
   simple-actors:                                  [ i686-linux, x86_64-linux, x86_64-darwin ]
+  simple-affine-space:                            [ i686-linux, x86_64-linux, x86_64-darwin ]
   simple-atom:                                    [ i686-linux, x86_64-linux, x86_64-darwin ]
   simple-bluetooth:                               [ i686-linux, x86_64-linux, x86_64-darwin ]
   simple-c-value:                                 [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -8884,6 +8925,7 @@ dont-distribute-packages:
   spoonutil:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
   spoty:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
   Sprig:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
+  sprinkles:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
   spritz:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   spsa:                                           [ i686-linux, x86_64-linux, x86_64-darwin ]
   spy:                                            [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -8908,6 +8950,7 @@ dont-distribute-packages:
   sssp:                                           [ i686-linux, x86_64-linux, x86_64-darwin ]
   sstable:                                        [ i686-linux, x86_64-linux, x86_64-darwin ]
   SSTG:                                           [ i686-linux, x86_64-linux, x86_64-darwin ]
+  st2:                                            [ i686-linux, x86_64-linux, x86_64-darwin ]
   stable-heap:                                    [ i686-linux, x86_64-linux, x86_64-darwin ]
   stable-maps:                                    [ i686-linux, x86_64-linux, x86_64-darwin ]
   stable-marriage:                                [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -8953,6 +8996,7 @@ dont-distribute-packages:
   stats:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
   statsd-client:                                  [ i686-linux, x86_64-linux, x86_64-darwin ]
   statsd:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
+  statsdi:                                        [ i686-linux, x86_64-linux, x86_64-darwin ]
   stb-image-redux:                                [ i686-linux, x86_64-linux, x86_64-darwin ]
   stb-truetype:                                   [ i686-linux, x86_64-linux, x86_64-darwin ]
   stdata:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -9697,6 +9741,7 @@ dont-distribute-packages:
   visualize-cbn:                                  [ i686-linux, x86_64-linux, x86_64-darwin ]
   vk-aws-route53:                                 [ i686-linux, x86_64-linux, x86_64-darwin ]
   VKHS:                                           [ i686-linux, x86_64-linux, x86_64-darwin ]
+  voicebase:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
   vorbiscomment:                                  [ i686-linux, x86_64-linux, x86_64-darwin ]
   vowpal-utils:                                   [ i686-linux, x86_64-linux, x86_64-darwin ]
   voyeur:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -9708,6 +9753,7 @@ dont-distribute-packages:
   vty-menu:                                       [ i686-linux, x86_64-linux, x86_64-darwin ]
   vty-ui-extras:                                  [ i686-linux, x86_64-linux, x86_64-darwin ]
   vty-ui:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
+  waargonaut:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   wacom-daemon:                                   [ i686-linux, x86_64-linux, x86_64-darwin ]
   waddle:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   wahsp:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -9825,6 +9871,7 @@ dont-distribute-packages:
   winio:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
   wire-streams:                                   [ i686-linux, x86_64-linux, x86_64-darwin ]
   wiring:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
+  witty:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
   wkt-geom:                                       [ i686-linux, x86_64-linux, x86_64-darwin ]
   wkt:                                            [ i686-linux, x86_64-linux, x86_64-darwin ]
   wl-pprint-ansiterm:                             [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -9884,6 +9931,7 @@ dont-distribute-packages:
   X11-rm:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
   X11-xdamage:                                    [ i686-linux, x86_64-linux, x86_64-darwin ]
   X11-xfixes:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
+  x509-util:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
   x86-64bit:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
   xcb-types:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
   xcffib:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -9975,10 +10023,15 @@ dont-distribute-packages:
   yaml-rpc:                                       [ i686-linux, x86_64-linux, x86_64-darwin ]
   yaml2owl:                                       [ i686-linux, x86_64-linux, x86_64-darwin ]
   yamlkeysdiff:                                   [ i686-linux, x86_64-linux, x86_64-darwin ]
+  yampa-canvas:                                   [ i686-linux, x86_64-linux, x86_64-darwin ]
   yampa-glfw:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
+  yampa-gloss:                                    [ i686-linux, x86_64-linux, x86_64-darwin ]
   yampa-glut:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   yampa-sdl2:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
+  yampa-test:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   yampa2048:                                      [ i686-linux, x86_64-linux, x86_64-darwin ]
+  Yampa:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
+  YampaSynth:                                     [ i686-linux, x86_64-linux, x86_64-darwin ]
   yandex-translate:                               [ i686-linux, x86_64-linux, x86_64-darwin ]
   yaop:                                           [ i686-linux, x86_64-linux, x86_64-darwin ]
   yap:                                            [ i686-linux, x86_64-linux, x86_64-darwin ]
@@ -10079,6 +10132,7 @@ dont-distribute-packages:
   yjftp:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
   yjsvg:                                          [ i686-linux, x86_64-linux, x86_64-darwin ]
   yoctoparsec:                                    [ i686-linux, x86_64-linux, x86_64-darwin ]
+  yoda:                                           [ i686-linux, x86_64-linux, x86_64-darwin ]
   yoga:                                           [ i686-linux, x86_64-linux, x86_64-darwin ]
   Yogurt-Standalone:                              [ i686-linux, x86_64-linux, x86_64-darwin ]
   Yogurt:                                         [ i686-linux, x86_64-linux, x86_64-darwin ]

From d15d64352acc01f7d7774983141d13b274ea204a Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Fri, 2 Nov 2018 20:38:35 +0100
Subject: [PATCH 0516/1129] hackage-packages.nix: automatic Haskell package set
 update

This update was generated by hackage2nix v2.11.1-3-gc8d18e2 from Hackage revision
https://github.com/commercialhaskell/all-cabal-hashes/commit/01afc16a4386a534828580aa03853581be2a61bc.
---
 .../haskell-modules/hackage-packages.nix      | 727 +++++++++++++-----
 1 file changed, 522 insertions(+), 205 deletions(-)

diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix
index 2583fa1c449a..7fd4df278f14 100644
--- a/pkgs/development/haskell-modules/hackage-packages.nix
+++ b/pkgs/development/haskell-modules/hackage-packages.nix
@@ -1229,8 +1229,8 @@ self: {
      }:
      mkDerivation {
        pname = "BNFC";
-       version = "2.8.1";
-       sha256 = "082r1arj76563q1grc9ivpzfip8ghdffm87fj4q830s40dffl6rc";
+       version = "2.8.2";
+       sha256 = "1n4zgm6gls6lpasn8y5hy0m75qkkbk6mj18g2yhjrw8514a5860h";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [ array base ];
@@ -12316,10 +12316,8 @@ self: {
      }:
      mkDerivation {
        pname = "MiniAgda";
-       version = "0.2017.2.18";
-       sha256 = "0s3xp18y4kcjd1qq87vbhijbbpi9d1p08dgxw7521xlr3gmxkqxw";
-       revision = "1";
-       editedCabalFile = "0n4sd1b0c9fmgn7xqbhbms6y3ffkdgpa4fw7xcx31vgql2adxb0n";
+       version = "0.2018.11.4";
+       sha256 = "179f7kf355bkmpz1xjlf072axwsixjafh77m0anqx6q3g7qd0b36";
        isLibrary = false;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -19673,17 +19671,20 @@ self: {
      }) {};
 
   "Yampa" = callPackage
-    ({ mkDerivation, base, deepseq, random }:
+    ({ mkDerivation, base, deepseq, random, simple-affine-space }:
      mkDerivation {
        pname = "Yampa";
-       version = "0.12";
-       sha256 = "077fnazzcv7gckpklmdgk4hz6nnfnims11c1r4dwpnb0z6n31wcg";
+       version = "0.13";
+       sha256 = "1rxy8vky3wmqn4awr6v7r40ghk6nr27y11jnzbkj1bdp1948irc0";
        isLibrary = true;
        isExecutable = true;
-       libraryHaskellDepends = [ base deepseq random ];
+       libraryHaskellDepends = [
+         base deepseq random simple-affine-space
+       ];
        testHaskellDepends = [ base ];
-       description = "Library for programming hybrid systems";
+       description = "Elegant Functional Reactive Programming Language for Hybrid Systems";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "Yampa-core" = callPackage
@@ -19715,6 +19716,7 @@ self: {
        ];
        description = "Software synthesizer";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "Yocto" = callPackage
@@ -27123,8 +27125,8 @@ self: {
      }:
      mkDerivation {
        pname = "antiope-athena";
-       version = "6.1.1";
-       sha256 = "1scshv7whw3ylp9nq8zgz12rbkvwq6hmcwn04s8h7ygnb9k3zy21";
+       version = "6.1.2";
+       sha256 = "0af1sd3hhi2j2bsglqi5vqs7cjh719zbzkjcxi68sy4h3783vqc2";
        libraryHaskellDepends = [
          amazonka amazonka-athena amazonka-core base lens resourcet text
          unliftio-core
@@ -27140,8 +27142,8 @@ self: {
     ({ mkDerivation, aeson, antiope-s3, avro, base, bytestring, text }:
      mkDerivation {
        pname = "antiope-contract";
-       version = "6.1.1";
-       sha256 = "14nvb786w4cqam3nd3wjfr7m0ysbr07vjm0ivwsxyvda3mwkn7pz";
+       version = "6.1.2";
+       sha256 = "1s9xikffc3l6q7l2fmi5yz6shw90w8zgb8sc1s3d85z7kfsi87rp";
        libraryHaskellDepends = [
          aeson antiope-s3 avro base bytestring text
        ];
@@ -27156,8 +27158,8 @@ self: {
      }:
      mkDerivation {
        pname = "antiope-core";
-       version = "6.1.1";
-       sha256 = "0vmqyhxwfs45x3cqrlm1nij0cfnw2bk6sq3ldq6vrfpzm892g6py";
+       version = "6.1.2";
+       sha256 = "0bn975bcr1fm8w63m641iip22hw5alam28z73p3cjcx9wkzkfca4";
        libraryHaskellDepends = [
          amazonka amazonka-core base bytestring generic-lens http-client
          lens monad-logger mtl resourcet transformers unliftio-core
@@ -27177,8 +27179,8 @@ self: {
      }:
      mkDerivation {
        pname = "antiope-dynamodb";
-       version = "6.1.1";
-       sha256 = "1kjsqka70bnkjzgdi427jqihlnm997ii147nzj8w04w5d6ynm2ly";
+       version = "6.1.2";
+       sha256 = "04ik6ms66yiq934dqhadw4fhb5js08q6czpgb8vqsv8pvm3cj30f";
        libraryHaskellDepends = [
          amazonka amazonka-core amazonka-dynamodb antiope-core base
          generic-lens lens text unliftio-core unordered-containers
@@ -27198,8 +27200,8 @@ self: {
      }:
      mkDerivation {
        pname = "antiope-messages";
-       version = "6.1.1";
-       sha256 = "0nklh0wi1y6drpm7i4ssjc8xx4b20knpnghn2yv839ph6w0f0r13";
+       version = "6.1.2";
+       sha256 = "1vkjflqi2k4d74hwagfaff4gyjx5809d2yjijhmgwk5aldyydw9m";
        libraryHaskellDepends = [
          aeson amazonka amazonka-core amazonka-s3 amazonka-sqs antiope-s3
          base generic-lens lens lens-aeson monad-loops network-uri text
@@ -27223,8 +27225,8 @@ self: {
      }:
      mkDerivation {
        pname = "antiope-s3";
-       version = "6.1.1";
-       sha256 = "0aq0qk377wvxm3kgy63zk382rnvjxx8csxj63vnmc5gikz5i2ya7";
+       version = "6.1.2";
+       sha256 = "1lrawihlnl1kmhqimcf59d7a2ad916ss83zjllx3x8cy6br68b4r";
        libraryHaskellDepends = [
          amazonka amazonka-core amazonka-s3 antiope-core base bytestring
          conduit conduit-extra exceptions generic-lens http-types lens
@@ -27246,8 +27248,8 @@ self: {
      }:
      mkDerivation {
        pname = "antiope-sns";
-       version = "6.1.1";
-       sha256 = "0jdlm3sl7w5cq2hpikm73763np56g16z48b34wavg9yblrdfvvn7";
+       version = "6.1.2";
+       sha256 = "0b6blhcc1dplc16v9k12jn9s9ii5575sj9hm4kbla8483j24rd3k";
        libraryHaskellDepends = [
          aeson amazonka amazonka-core amazonka-sns base generic-lens lens
          text unliftio-core
@@ -27267,8 +27269,8 @@ self: {
      }:
      mkDerivation {
        pname = "antiope-sqs";
-       version = "6.1.1";
-       sha256 = "189wgl3qpmf4amgc571zv88zpdblaqcbcnw93a6lk6i7rzc6h40r";
+       version = "6.1.2";
+       sha256 = "1d508kcsm1bxz768fxin5jc6y7jqskdxxpgl1z5n1579aq7wb0ia";
        libraryHaskellDepends = [
          aeson amazonka amazonka-core amazonka-s3 amazonka-sqs
          antiope-messages antiope-s3 base generic-lens lens lens-aeson
@@ -29044,6 +29046,7 @@ self: {
        ];
        description = "Memory-efficient ArrayList implementation";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "arrow-extras" = callPackage
@@ -32475,17 +32478,16 @@ self: {
     ({ mkDerivation, base, binary, bytestring, containers, criterion
      , directory, errors, exceptions, filepath, lens, mmap, mtl, pipes
      , pipes-interleave, QuickCheck, tasty, tasty-quickcheck
-     , transformers, vector
+     , transformers, vector, vector-binary-instances
      }:
      mkDerivation {
        pname = "b-tree";
-       version = "0.1.3";
-       sha256 = "0r1bgcjsykd9qzzr6chxw8bfnmvk32p9663j6h11wmq6nq7nrlkb";
-       revision = "3";
-       editedCabalFile = "1i9qadxdq215j6dimyrmdkzl3d95l4gb65d2visf8rq1jfmdz62n";
+       version = "0.1.4";
+       sha256 = "17hcv85020dm5h3449bfa763bcbl723h17chah4418dby2ql5lxg";
        libraryHaskellDepends = [
          base binary bytestring containers directory errors exceptions
          filepath lens mmap mtl pipes pipes-interleave transformers vector
+         vector-binary-instances
        ];
        testHaskellDepends = [
          base binary containers pipes QuickCheck tasty tasty-quickcheck
@@ -33123,6 +33125,7 @@ self: {
        doHaddock = false;
        description = "Helps migrating projects to base-compat(-batteries)";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "base-encoding" = callPackage
@@ -34119,13 +34122,14 @@ self: {
     ({ mkDerivation, base, dunai, MonadRandom, mtl, transformers }:
      mkDerivation {
        pname = "bearriver";
-       version = "0.10.4.3";
-       sha256 = "0d8yhccsg66163cjkdccdjf26rkzv4i7fv454fj9vhylxcggzjin";
+       version = "0.10.4.4";
+       sha256 = "14aqp6jqca5b4z0bf5q18pq5l9q43bzz18zjwn3j0ns1fakrq5bb";
        libraryHaskellDepends = [
          base dunai MonadRandom mtl transformers
        ];
        description = "A replacement of Yampa based on Monadic Stream Functions";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "beautifHOL" = callPackage
@@ -43095,6 +43099,7 @@ self: {
        ];
        description = "Canonical JSON for signing and hashing JSON values";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "canteven-config" = callPackage
@@ -49854,6 +49859,7 @@ self: {
        testHaskellDepends = [ base QuickCheck ];
        description = "Arrays where the index type is a function of the shape type";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "comfort-graph" = callPackage
@@ -51952,8 +51958,8 @@ self: {
      }:
      mkDerivation {
        pname = "confcrypt";
-       version = "0.1.0.3";
-       sha256 = "0fj40m3yncrwb3z2dznvls17v40xm1kh0i4ig16mpb9qj7ww8chl";
+       version = "0.1.0.4";
+       sha256 = "1c25xjpnw802pqfjksx5fxjq9ynwfjkkmyad169bvfasry98cdbb";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -51976,6 +51982,7 @@ self: {
          text transformers
        ];
        license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "confetti" = callPackage
@@ -56631,6 +56638,7 @@ self: {
        executableHaskellDepends = [ base GLUT Yampa ];
        description = "3D Yampa/GLUT Puzzle Game";
        license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "cuckoo-filter" = callPackage
@@ -61971,8 +61979,8 @@ self: {
     ({ mkDerivation, base }:
      mkDerivation {
        pname = "descrilo";
-       version = "0.1.0.6";
-       sha256 = "166x7j8q5wg8iq1bf2qz01ps0b1pbfgizsy1zfhjd98a3zl9fid2";
+       version = "0.1.0.7";
+       sha256 = "00rk7m54igmrsi8j2fmql7c5wgyg7x5ws8397753470x5k2qv2ap";
        libraryHaskellDepends = [ base ];
        description = "Loads a list of items with fields";
        license = stdenv.lib.licenses.gpl3;
@@ -65584,8 +65592,8 @@ self: {
      }:
      mkDerivation {
        pname = "dmcc";
-       version = "1.0.0.1";
-       sha256 = "1qlw3jx9nn2by757kqask1ib2wi32zgdj53kinj2lnjn5f9qs466";
+       version = "1.1.0.0";
+       sha256 = "1lrscg4b13wd4gnkg3nsl2ala851lk03p9jxmlxmf2hbf4cl6cnc";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -67290,8 +67298,8 @@ self: {
     ({ mkDerivation, base, text, xml-types }:
      mkDerivation {
        pname = "dtd-types";
-       version = "0.3.0.1";
-       sha256 = "1w2ni9b8kn242grdqb4wxvgxqpkpp9qy66d57n33l5jghlg8b0s7";
+       version = "0.4.0.0";
+       sha256 = "1h5ypjnpjim2lwlc6jfp8ixqg7zbkj7fg2kpnlwnyj29n9g58rka";
        libraryHaskellDepends = [ base text xml-types ];
        description = "Basic types for representing XML DTDs";
        license = stdenv.lib.licenses.bsd3;
@@ -67507,6 +67515,21 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "dunai_0_5_1" = callPackage
+    ({ mkDerivation, base, MonadRandom, transformers, transformers-base
+     }:
+     mkDerivation {
+       pname = "dunai";
+       version = "0.5.1";
+       sha256 = "07bkjp7z5lbm6466nc99p4ngiqkh5mgbczwl7rflxzis4w1vm997";
+       libraryHaskellDepends = [
+         base MonadRandom transformers transformers-base
+       ];
+       description = "Generalised reactive framework supporting classic, arrowized and monadic FRP";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "dunai-core" = callPackage
     ({ mkDerivation, base, MonadRandom, transformers, transformers-base
      }:
@@ -68986,6 +69009,7 @@ self: {
        ];
        description = "Eigen C++ library (linear algebra: matrices, sparse matrices, vectors, numerical solvers)";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "either" = callPackage
@@ -70745,6 +70769,7 @@ self: {
        ];
        description = "Display efficiently the state of the local environment";
        license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "envy" = callPackage
@@ -72780,6 +72805,7 @@ self: {
        ];
        description = "Compile time checks that a computation considers producing data through all possible constructors";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "exherbo-cabal" = callPackage
@@ -73556,26 +73582,30 @@ self: {
      }) {};
 
   "extensible-effects-concurrent" = callPackage
-    ({ mkDerivation, base, containers, data-default, deepseq, directory
-     , extensible-effects, filepath, HUnit, lens, logging-effect
-     , monad-control, mtl, parallel, process, QuickCheck, random, stm
-     , tagged, tasty, tasty-discover, tasty-hunit, time, transformers
+    ({ mkDerivation, async, base, containers, data-default, deepseq
+     , directory, enclosed-exceptions, extensible-effects, filepath
+     , HUnit, lens, logging-effect, monad-control, mtl, parallel
+     , process, QuickCheck, random, stm, tagged, tasty, tasty-discover
+     , tasty-hunit, time, transformers
      }:
      mkDerivation {
        pname = "extensible-effects-concurrent";
-       version = "0.8";
-       sha256 = "17xag4qcdgv7fihyigmi48kf4mb9f3dbxqlh7a7s1xqdfh9l6mc2";
+       version = "0.9.0";
+       sha256 = "0y6rf1whjwhrzkjw70sayl95lf8b6dhn5l9pxhwp05gnz3ll81ka";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
-         base containers data-default deepseq directory extensible-effects
-         filepath lens logging-effect monad-control mtl parallel process
-         QuickCheck random stm tagged time transformers
+         async base containers data-default deepseq directory
+         enclosed-exceptions extensible-effects filepath lens logging-effect
+         monad-control mtl parallel process QuickCheck random stm tagged
+         time transformers
+       ];
+       executableHaskellDepends = [
+         base data-default extensible-effects lens
        ];
-       executableHaskellDepends = [ base extensible-effects ];
        testHaskellDepends = [
-         base containers deepseq extensible-effects HUnit lens QuickCheck
-         stm tasty tasty-discover tasty-hunit
+         base containers data-default deepseq extensible-effects HUnit lens
+         QuickCheck stm tasty tasty-discover tasty-hunit
        ];
        testToolDepends = [ tasty-discover ];
        description = "Message passing concurrency as extensible-effect";
@@ -79142,8 +79172,8 @@ self: {
      }:
      mkDerivation {
        pname = "free-algebras";
-       version = "0.0.5.1";
-       sha256 = "1h8966am7j0xdqq2vmfj2cyrzmkd70bs1kx9fpx1bgn1acdpg1xa";
+       version = "0.0.6.0";
+       sha256 = "1332awl3aps1zw537ym18jp1d5igwsnpk3acmrznks7vfsdr27as";
        libraryHaskellDepends = [
          base constraints containers data-fix dlist free groups
          kan-extensions mtl natural-numbers transformers
@@ -79157,6 +79187,17 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "free-category" = callPackage
+    ({ mkDerivation, base, free-algebras }:
+     mkDerivation {
+       pname = "free-category";
+       version = "0.0.1.0";
+       sha256 = "0cpcn10kbsx1xvvxvvcx5hpa0p9vhkrjf7cmzva2zpmhdj4jp5rg";
+       libraryHaskellDepends = [ base free-algebras ];
+       description = "Free category";
+       license = stdenv.lib.licenses.mpl20;
+     }) {};
+
   "free-concurrent" = callPackage
     ({ mkDerivation, base, type-aligned }:
      mkDerivation {
@@ -88229,6 +88270,29 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "godot-haskell" = callPackage
+    ({ mkDerivation, aeson, ansi-wl-pprint, base, bytestring, c2hs
+     , casing, colour, containers, lens, linear, mtl, parsec, parsers
+     , stm, template-haskell, text, unordered-containers, vector
+     }:
+     mkDerivation {
+       pname = "godot-haskell";
+       version = "0.1.0.0";
+       sha256 = "02nvs84bq4nif235iycjwkxmabvs0avwm2xilpwv8kddv95z1f8i";
+       revision = "3";
+       editedCabalFile = "0dpvraw31gpzzlsy7j7mv99jvmwhldycll1hnbw2iscb5zs2g409";
+       libraryHaskellDepends = [
+         aeson ansi-wl-pprint base bytestring casing colour containers lens
+         linear mtl parsec parsers stm template-haskell text
+         unordered-containers vector
+       ];
+       libraryToolDepends = [ c2hs ];
+       doHaddock = false;
+       description = "Haskell bindings for the Godot game engine API";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "gofer-prelude" = callPackage
     ({ mkDerivation, base, ghc-prim }:
      mkDerivation {
@@ -89707,8 +89771,8 @@ self: {
      }:
      mkDerivation {
        pname = "google-maps-geocoding";
-       version = "0.4.0.1";
-       sha256 = "1icya5sh7psr2m12wdx6a5dq9897lp92gq1skxp6s55sksqvglw8";
+       version = "0.4.0.2";
+       sha256 = "0q5zack0lcmn8wsksdlmd0vch1lizia9h4sqax7ydx09is39jzxm";
        libraryHaskellDepends = [
          aeson base google-static-maps http-client servant servant-client
          text
@@ -89834,8 +89898,8 @@ self: {
      }:
      mkDerivation {
        pname = "google-static-maps";
-       version = "0.5.0.2";
-       sha256 = "05gxk4xnxlshcais8ljzp2wbr93kfi97bjbk2rasj5s2mbvw7rvi";
+       version = "0.5.0.3";
+       sha256 = "18c4s9nvpwv34djf7m2jq5mdpyjplp1hcxrfrp5cdyglk6j0j13b";
        libraryHaskellDepends = [
          aeson base base64-bytestring bytedump bytestring cryptonite
          double-conversion http-client JuicyPixels memory network-uri
@@ -97998,6 +98062,7 @@ self: {
        testHaskellDepends = [ base eigen vector ];
        description = "Some utility functions for haskell-eigen library";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "haskell-exp-parser" = callPackage
@@ -100600,6 +100665,7 @@ self: {
        doHaddock = false;
        description = "Torch for tensors and neural networks in Haskell";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "hasktorch-codegen" = callPackage
@@ -100659,6 +100725,7 @@ self: {
        ];
        description = "Bindings to Torch";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {ATen = null;};
 
   "hasktorch-ffi-thc" = callPackage
@@ -100681,6 +100748,7 @@ self: {
        ];
        description = "Bindings to Cutorch";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {ATen = null;};
 
   "hasktorch-indef" = callPackage
@@ -100709,6 +100777,7 @@ self: {
        doHaddock = false;
        description = "Core Hasktorch abstractions wrapping FFI bindings";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "hasktorch-signatures" = callPackage
@@ -100734,6 +100803,7 @@ self: {
        doHaddock = false;
        description = "Backpack signatures for Tensor operations";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "hasktorch-signatures-partial" = callPackage
@@ -100749,6 +100819,7 @@ self: {
        ];
        description = "Functions to partially satisfy tensor signatures";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "hasktorch-signatures-support" = callPackage
@@ -100765,6 +100836,7 @@ self: {
        doHaddock = false;
        description = "Signatures for support tensors in hasktorch";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "hasktorch-signatures-types" = callPackage
@@ -100803,6 +100875,27 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "hasktorch-zoo" = callPackage
+    ({ mkDerivation, backprop, base, deepseq, dimensions, directory
+     , filepath, generic-lens, ghc-typelits-natnormalise, hashable
+     , hasktorch, JuicyPixels, microlens, mtl, mwc-random, primitive
+     , safe-exceptions, singletons, transformers, vector
+     }:
+     mkDerivation {
+       pname = "hasktorch-zoo";
+       version = "0.0.1.0";
+       sha256 = "1cpk2q1m68y7wljaki1d4a4y45hqh34ia8r6zfw0b62f9b6zihjm";
+       libraryHaskellDepends = [
+         backprop base deepseq dimensions directory filepath generic-lens
+         ghc-typelits-natnormalise hashable hasktorch JuicyPixels microlens
+         mtl mwc-random primitive safe-exceptions singletons transformers
+         vector
+       ];
+       description = "Neural architectures in hasktorch";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "haskus-binary" = callPackage
     ({ mkDerivation, base, bytestring, cereal, criterion, haskus-utils
      , mtl, QuickCheck, tasty, tasty-quickcheck
@@ -100898,8 +100991,8 @@ self: {
      }:
      mkDerivation {
        pname = "haskus-utils-variant";
-       version = "2.0.1";
-       sha256 = "1rg4m1iq2fnnjxd6vbxsqnv21h8rnqisvxxfhns7hc167aydfwwp";
+       version = "2.0.3";
+       sha256 = "0yxlpznmc5yyv9ibx38f2slcj8r70qcz963j2fsbi5xr88ih7and";
        libraryHaskellDepends = [
          base haskus-utils-data haskus-utils-types template-haskell
        ];
@@ -101643,6 +101736,7 @@ self: {
        ];
        description = "A truth table generator for classical propositional logic";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "haven" = callPackage
@@ -103973,6 +104067,7 @@ self: {
        ];
        description = "A command-line manager for delicious kitchen recipes";
        license = stdenv.lib.licenses.gpl3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "hero-club-five-tenets" = callPackage
@@ -104653,6 +104748,7 @@ self: {
        ];
        description = "Heyting and Boolean algebras";
        license = stdenv.lib.licenses.mpl20;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "hfann" = callPackage
@@ -107513,17 +107609,17 @@ self: {
      }) {};
 
   "hmatrix-quadprogpp" = callPackage
-    ({ mkDerivation, base, hmatrix, quadprog, vector }:
+    ({ mkDerivation, base, hmatrix, QuadProgpp, vector }:
      mkDerivation {
        pname = "hmatrix-quadprogpp";
        version = "0.4.0.0";
        sha256 = "0bvgph7x5niryn4f1ah6726np2nv8xnrvqn3hbiw8f5m7314iv5l";
        libraryHaskellDepends = [ base hmatrix vector ];
-       librarySystemDepends = [ quadprog ];
+       librarySystemDepends = [ QuadProgpp ];
        description = "Bindings to the QuadProg++ quadratic programming library";
        license = stdenv.lib.licenses.bsd3;
        hydraPlatforms = stdenv.lib.platforms.none;
-     }) {quadprog = null;};
+     }) {inherit (pkgs) QuadProgpp;};
 
   "hmatrix-repa" = callPackage
     ({ mkDerivation, base, hmatrix, repa, vector }:
@@ -109113,17 +109209,14 @@ self: {
      }) {};
 
   "hopenssl" = callPackage
-    ({ mkDerivation, base, bytestring, Cabal, cabal-doctest, doctest
-     , HUnit, openssl
-     }:
+    ({ mkDerivation, base, bytestring, HUnit, openssl }:
      mkDerivation {
        pname = "hopenssl";
-       version = "2.2.1";
-       sha256 = "1pxbs1k8sizvvz1nn1zv2i5grn0w11s9g09z07w5f80kbz0slcbh";
-       setupHaskellDepends = [ base Cabal cabal-doctest ];
+       version = "2.2.2";
+       sha256 = "0k589mi4sny88jaqxcqd0jgy6kmbzslxk6y1bk8xkvq73nvjxnjl";
        libraryHaskellDepends = [ base bytestring ];
        librarySystemDepends = [ openssl ];
-       testHaskellDepends = [ base doctest HUnit ];
+       testHaskellDepends = [ base HUnit ];
        description = "FFI Bindings to OpenSSL's EVP Digest Interface";
        license = stdenv.lib.licenses.bsd3;
        maintainers = with stdenv.lib.maintainers; [ peti ];
@@ -109715,7 +109808,7 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
-  "hpack_0_31_0" = callPackage
+  "hpack_0_31_1" = callPackage
     ({ mkDerivation, aeson, base, bifunctors, bytestring, Cabal
      , containers, cryptonite, deepseq, directory, filepath, Glob, hspec
      , hspec-discover, http-client, http-client-tls, http-types, HUnit
@@ -109725,8 +109818,8 @@ self: {
      }:
      mkDerivation {
        pname = "hpack";
-       version = "0.31.0";
-       sha256 = "0lh60zqjzbjq0hkdia97swz0g1r3ihj84fph9jq9936fpb7hm1n9";
+       version = "0.31.1";
+       sha256 = "0fipbmmj4x588z7vh635mizhym9krydfxr49bgaf7xir4fsb4fmc";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -111606,6 +111699,7 @@ self: {
        testHaskellDepends = [ base tasty tasty-hspec ];
        description = "A preprocessor that helps with writing Haskell bindings to C code";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "hsc3" = callPackage
@@ -113236,14 +113330,14 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
-  "hspec_2_5_8" = callPackage
+  "hspec_2_6_0" = callPackage
     ({ mkDerivation, base, hspec-core, hspec-discover
      , hspec-expectations, QuickCheck
      }:
      mkDerivation {
        pname = "hspec";
-       version = "2.5.8";
-       sha256 = "061k4r1jlzcnl0mzvk5nvamw1bx36rs2a38958m2hlh2mmfnfnsr";
+       version = "2.6.0";
+       sha256 = "0qwla0bff2q52v27rxjgcp8g3yw0r2iyggp8ggmmabxkk983db6i";
        libraryHaskellDepends = [
          base hspec-core hspec-discover hspec-expectations QuickCheck
        ];
@@ -113294,6 +113388,21 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "hspec-contrib_0_5_1" = callPackage
+    ({ mkDerivation, base, hspec, hspec-core, HUnit, QuickCheck }:
+     mkDerivation {
+       pname = "hspec-contrib";
+       version = "0.5.1";
+       sha256 = "0hhzxaa3fxz5mk5qcsrnfr98a7bn3szx2ydgr0x9mbqmm1jg06rc";
+       revision = "1";
+       editedCabalFile = "0vjmyrsb878914b4khwdy3fcn9n217q8k5xnszlrp7dl1jnbqyi4";
+       libraryHaskellDepends = [ base hspec-core HUnit ];
+       testHaskellDepends = [ base hspec hspec-core HUnit QuickCheck ];
+       description = "Contributed functionality for Hspec";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "hspec-core_2_4_8" = callPackage
     ({ mkDerivation, ansi-terminal, array, base, call-stack, deepseq
      , directory, filepath, hspec-expectations, hspec-meta, HUnit
@@ -113351,7 +113460,7 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
-  "hspec-core_2_5_8" = callPackage
+  "hspec-core_2_6_0" = callPackage
     ({ mkDerivation, ansi-terminal, array, base, call-stack, clock
      , deepseq, directory, filepath, hspec-expectations, hspec-meta
      , HUnit, process, QuickCheck, quickcheck-io, random, setenv
@@ -113359,8 +113468,8 @@ self: {
      }:
      mkDerivation {
        pname = "hspec-core";
-       version = "2.5.8";
-       sha256 = "08y6rhzc2vwmrxzl3bc8iwklkhgzv7x90mf9fnjnddlyaj7wcjg5";
+       version = "2.6.0";
+       sha256 = "0f3fb6cgfp0yywxi9ii2vzmkrj669nprphcs1piad7bacsk12y6r";
        libraryHaskellDepends = [
          ansi-terminal array base call-stack clock deepseq directory
          filepath hspec-expectations HUnit QuickCheck quickcheck-io random
@@ -113435,13 +113544,13 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
-  "hspec-discover_2_5_8" = callPackage
+  "hspec-discover_2_6_0" = callPackage
     ({ mkDerivation, base, directory, filepath, hspec-meta, QuickCheck
      }:
      mkDerivation {
        pname = "hspec-discover";
-       version = "2.5.8";
-       sha256 = "001i0ldxi88qcww2hh3mkdr6svw4kj23lf65camk9bgn5zwvq5aj";
+       version = "2.6.0";
+       sha256 = "17q5g5z7pylw8ghx1jbwk5qrafcg2cblpckvkwla1y3dzry43nc2";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [ base directory filepath ];
@@ -117999,8 +118108,8 @@ self: {
      }:
      mkDerivation {
        pname = "hw-streams";
-       version = "0.0.0.5";
-       sha256 = "0qhpkgxip9bnx6bcg1cnz9gbnwifkp9vinvp89152h720rsawh4i";
+       version = "0.0.0.6";
+       sha256 = "1pfzg1xq39x1mw91nkmswc3sprjh58cygblsqi69x7msgfjdl116";
        libraryHaskellDepends = [
          base bytestring ghc-prim hw-bits hw-prim mmap primitive semigroups
          transformers vector
@@ -124962,8 +125071,8 @@ self: {
     ({ mkDerivation, alex, array, base, happy, pretty }:
      mkDerivation {
        pname = "java-adt";
-       version = "0.2016.11.28";
-       sha256 = "1p4j42nzsbd2dsag2gfnngvbdn5vx9cp8lmli6x05sdywabyckc7";
+       version = "0.2018.11.4";
+       sha256 = "1pdp7yvq0gpbxw7gp61r5mkrhdiff0cvlxssxzvg770idp46j6p5";
        isLibrary = false;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -128627,6 +128736,7 @@ self: {
        libraryHaskellDepends = [ base ];
        description = "Utilities to work with lists of types";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "kind-generics" = callPackage
@@ -128638,6 +128748,7 @@ self: {
        libraryHaskellDepends = [ base kind-apply ];
        description = "Generic programming in GHC style for arbitrary kinds and GADTs";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "kinds" = callPackage
@@ -130439,11 +130550,12 @@ self: {
      }:
      mkDerivation {
        pname = "language-elm";
-       version = "0.1.1.0";
-       sha256 = "0hg9b8cyw08gwbsdmqhadnx0clj3rvjavrd3hw597bh2iss3rafl";
+       version = "0.1.1.3";
+       sha256 = "11g8jf7pbkb6gjwxjrwnk6hx38hjfymm421qnqd41cm0w2xmxbhh";
+       enableSeparateDataOutput = true;
        libraryHaskellDepends = [ base MissingH mtl pretty protolude ];
        libraryToolDepends = [ doctest ];
-       testHaskellDepends = [ base hspec mtl pretty protolude ];
+       testHaskellDepends = [ base doctest hspec mtl pretty protolude ];
        testToolDepends = [ doctest ];
        description = "Generate elm code";
        license = stdenv.lib.licenses.bsd3;
@@ -130946,45 +131058,44 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
-  "language-puppet_1_4_0" = callPackage
-    ({ mkDerivation, aeson, ansi-wl-pprint, attoparsec, base
+  "language-puppet_1_4_1" = callPackage
+    ({ mkDerivation, aeson, ansi-wl-pprint, async, attoparsec, base
      , base16-bytestring, bytestring, case-insensitive, containers
-     , cryptonite, directory, exceptions, filecache, filepath
-     , formatting, Glob, hashable, hruby, hslogger, hspec
-     , hspec-megaparsec, http-api-data, http-client, lens, lens-aeson
-     , megaparsec, memory, mtl, operational, optparse-applicative
-     , parallel-io, parsec, parser-combinators, pcre-utils, process
-     , protolude, random, regex-pcre-builtin, scientific, servant
-     , servant-client, split, stm, strict-base-types, temporary, text
-     , time, transformers, unix, unordered-containers, vector, yaml
+     , cryptonite, directory, filecache, filepath, formatting, Glob
+     , hashable, hruby, hslogger, hspec, hspec-megaparsec, http-api-data
+     , http-client, lens, lens-aeson, megaparsec, memory, mtl
+     , operational, optparse-applicative, parsec, parser-combinators
+     , pcre-utils, protolude, random, regex-pcre-builtin, scientific
+     , servant, servant-client, split, stm, strict-base-types, temporary
+     , text, time, transformers, unix, unordered-containers, vector
+     , yaml
      }:
      mkDerivation {
        pname = "language-puppet";
-       version = "1.4.0";
-       sha256 = "169kzd6csar170j0zqzisa82jxs5xfang17ys6aa4m1jx0nbh4mz";
+       version = "1.4.1";
+       sha256 = "1az4lalx2qb9wf0n99zjd9agy20x8369f80411mhj11rcnnl1a66";
        isLibrary = true;
        isExecutable = true;
        enableSeparateDataOutput = true;
        libraryHaskellDepends = [
          aeson ansi-wl-pprint attoparsec base base16-bytestring bytestring
-         case-insensitive containers cryptonite directory exceptions
-         filecache filepath formatting hashable hruby hslogger hspec
-         http-api-data http-client lens lens-aeson megaparsec memory mtl
-         operational parsec parser-combinators pcre-utils process protolude
-         random regex-pcre-builtin scientific servant servant-client split
-         stm strict-base-types text time transformers unix
-         unordered-containers vector yaml
+         case-insensitive containers cryptonite directory filecache filepath
+         formatting hashable hruby hslogger http-api-data http-client lens
+         lens-aeson megaparsec memory mtl operational parsec
+         parser-combinators pcre-utils protolude random regex-pcre-builtin
+         scientific servant servant-client split stm strict-base-types text
+         time transformers unix unordered-containers vector yaml
        ];
        executableHaskellDepends = [
-         aeson ansi-wl-pprint base bytestring containers Glob hslogger
-         http-client lens megaparsec mtl optparse-applicative parallel-io
-         regex-pcre-builtin strict-base-types text transformers
-         unordered-containers vector yaml
+         aeson ansi-wl-pprint async base bytestring containers Glob hslogger
+         http-client lens mtl optparse-applicative regex-pcre-builtin
+         strict-base-types text transformers unordered-containers vector
+         yaml
        ];
        testHaskellDepends = [
          base Glob hslogger hspec hspec-megaparsec lens megaparsec mtl
-         pcre-utils protolude scientific strict-base-types temporary text
-         transformers unordered-containers vector
+         pcre-utils scientific strict-base-types temporary text transformers
+         unordered-containers vector
        ];
        description = "Tools to parse and evaluate the Puppet DSL";
        license = stdenv.lib.licenses.bsd3;
@@ -132739,6 +132850,7 @@ self: {
        libraryHaskellDepends = [ base singletons ];
        description = "Type-level lenses using singletons";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "lens-utils" = callPackage
@@ -134061,6 +134173,7 @@ self: {
        ];
        description = "STM operations lifted through monad transformer stacks";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "lifted-threads" = callPackage
@@ -137637,8 +137750,8 @@ self: {
        pname = "lrucaching";
        version = "0.3.3";
        sha256 = "192a2zap1bmxa2y48n48rmngf18fr8k0az4a230hziv3g795yzma";
-       revision = "4";
-       editedCabalFile = "11zfnngp3blx8c3sgy5cva1g9bp69wqz7ys23gdm905i7sjjs6a9";
+       revision = "5";
+       editedCabalFile = "0dfrgg60nd7l7pfjar1s1g380r4591y6ccv9fyh0n34ymhizk84y";
        libraryHaskellDepends = [
          base base-compat deepseq hashable psqueues vector
        ];
@@ -137758,8 +137871,8 @@ self: {
      }:
      mkDerivation {
        pname = "ltext";
-       version = "0.1.2.2";
-       sha256 = "12ql2p9zkib4m7hbfxzn8pxg0n9rgf35bhf1csrf48b6kzl9z28f";
+       version = "0.1.3";
+       sha256 = "1sd8iqcfm7qsp8rq1ckixi8lss8mwi4siqqgsybbxjg6ajs9m2x6";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -137773,8 +137886,9 @@ self: {
          transformers unordered-containers
        ];
        testHaskellDepends = [
-         base QuickCheck quickcheck-combinators quickcheck-instances tasty
-         tasty-quickcheck text
+         attoparsec base directory exceptions extra mtl pretty QuickCheck
+         quickcheck-combinators quickcheck-instances tasty tasty-quickcheck
+         text transformers unordered-containers
        ];
        description = "Parameterized file evaluator";
        license = stdenv.lib.licenses.bsd3;
@@ -141088,17 +141202,15 @@ self: {
      }:
      mkDerivation {
        pname = "mcm";
-       version = "0.6.5.0";
-       sha256 = "1vf54aziyybxyc9bwnn57pfcjmgli2hjjd2kzij8vy2g64ipip9m";
-       revision = "2";
-       editedCabalFile = "0xgnh356qwc1zdailqr3m6hbv7q5gc36ycqfz31z6l5kphmbblsc";
+       version = "0.6.8.1";
+       sha256 = "1nn6s15c6wwi7b0afzqfczdmc0ivrc8ncychmjym93lw967vjm67";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
          base blaze-html bytestring containers directory filepath hostname
          MissingH polyparse process text unix
        ];
-       description = "Manages the contents of files and directories";
+       description = "Machine Configuration Manager";
        license = stdenv.lib.licenses.gpl3;
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
@@ -142306,6 +142418,7 @@ self: {
        ];
        description = "Australian METAR";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "metar-http" = callPackage
@@ -142330,6 +142443,7 @@ self: {
        ];
        description = "HTTP for METAR";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "metric" = callPackage
@@ -142634,6 +142748,18 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "microlens_0_4_10" = callPackage
+    ({ mkDerivation, base }:
+     mkDerivation {
+       pname = "microlens";
+       version = "0.4.10";
+       sha256 = "1v277yyy4p9q57xr2lfp6qs24agglfczmcabrapxrzci3jfshmcw";
+       libraryHaskellDepends = [ base ];
+       description = "A tiny lens library with no dependencies. If you're writing an app, you probably want microlens-platform, not this.";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "microlens-aeson" = callPackage
     ({ mkDerivation, aeson, attoparsec, base, bytestring, criterion
      , deepseq, hashable, lens, lens-aeson, microlens, scientific, tasty
@@ -142699,6 +142825,22 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "microlens-ghc_0_4_10" = callPackage
+    ({ mkDerivation, array, base, bytestring, containers, microlens
+     , transformers
+     }:
+     mkDerivation {
+       pname = "microlens-ghc";
+       version = "0.4.10";
+       sha256 = "102dbrdsdadxbbhvx8avv1wbk84767a7lkb8ckp3zxk9g7qlly33";
+       libraryHaskellDepends = [
+         array base bytestring containers microlens transformers
+       ];
+       description = "microlens + array, bytestring, containers, transformers";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "microlens-mtl" = callPackage
     ({ mkDerivation, base, microlens, mtl, transformers
      , transformers-compat
@@ -142730,6 +142872,23 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "microlens-platform_0_3_11" = callPackage
+    ({ mkDerivation, base, hashable, microlens, microlens-ghc
+     , microlens-mtl, microlens-th, text, unordered-containers, vector
+     }:
+     mkDerivation {
+       pname = "microlens-platform";
+       version = "0.3.11";
+       sha256 = "18950lxgmsg5ksvyyi3zs1smjmb1qf1q73a3p3g44bh21miz0xwb";
+       libraryHaskellDepends = [
+         base hashable microlens microlens-ghc microlens-mtl microlens-th
+         text unordered-containers vector
+       ];
+       description = "Feature-complete microlens";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "microlens-th" = callPackage
     ({ mkDerivation, base, containers, microlens, template-haskell
      , th-abstraction, transformers
@@ -144272,6 +144431,17 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "modular" = callPackage
+    ({ mkDerivation, base, ghc-typelits-knownnat }:
+     mkDerivation {
+       pname = "modular";
+       version = "0.1.0.0";
+       sha256 = "1md01c9rzw24nymllkabckv46l7076kac6c317h5jindsncm7b8i";
+       libraryHaskellDepends = [ base ghc-typelits-knownnat ];
+       description = "Type-safe modular arithmetic";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "modular-arithmetic" = callPackage
     ({ mkDerivation, base, doctest, Glob }:
      mkDerivation {
@@ -146275,6 +146445,7 @@ self: {
        ];
        description = "Well-typed paths";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "montage" = callPackage
@@ -146833,16 +147004,18 @@ self: {
      }) {inherit (pkgs) mpg123;};
 
   "mpi-hs" = callPackage
-    ({ mkDerivation, base, bytestring, c2hs, criterion, monad-loops
-     , openmpi, store
+    ({ mkDerivation, base, binary, bytestring, c2hs, criterion
+     , monad-loops, openmpi, packman, store
      }:
      mkDerivation {
        pname = "mpi-hs";
-       version = "0.3.1.0";
-       sha256 = "1ka212z51ga82fwjj6jz6aiidn4fyvf0b5p9xma67fnv9a7cs4v2";
+       version = "0.4.1.0";
+       sha256 = "0bf0ghzvakww5slvfd3fq0sa0972i6y60lg6ibby49nslfkl52wd";
        isLibrary = true;
        isExecutable = true;
-       libraryHaskellDepends = [ base bytestring monad-loops store ];
+       libraryHaskellDepends = [
+         base binary bytestring monad-loops packman store
+       ];
        librarySystemDepends = [ openmpi ];
        libraryToolDepends = [ c2hs ];
        executableHaskellDepends = [ base ];
@@ -146850,6 +147023,7 @@ self: {
        benchmarkHaskellDepends = [ base criterion ];
        description = "MPI bindings for Haskell";
        license = stdenv.lib.licenses.asl20;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {inherit (pkgs) openmpi;};
 
   "mpppc" = callPackage
@@ -147700,33 +147874,37 @@ self: {
      }:
      mkDerivation {
        pname = "multilinear";
-       version = "0.2.2.1";
-       sha256 = "0clqjf37gsgkc2lghrvdqjpzxxx1ly4zymkcflaph5x3klqlv4xy";
+       version = "0.2.3.0";
+       sha256 = "0kx9a7iysihkaapgz8hwa5sn0c1z69yiagxmw0n5i1bjmslzssvb";
        libraryHaskellDepends = [
          base containers deepseq mwc-random primitive statistics vector
        ];
-       testHaskellDepends = [ base criterion deepseq ];
-       benchmarkHaskellDepends = [ base criterion deepseq ];
+       testHaskellDepends = [ base criterion ];
+       benchmarkHaskellDepends = [ base criterion ];
        description = "Comprehensive and efficient (multi)linear algebra implementation";
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
   "multilinear-io" = callPackage
-    ({ mkDerivation, aeson, base, bytestring, cereal, cereal-vector
-     , criterion, csv-enumerator, deepseq, either, multilinear
-     , transformers, vector, zlib
+    ({ mkDerivation, aeson, base, bytestring, cassava, cereal
+     , cereal-vector, conduit, criterion, deepseq, directory, either
+     , multilinear, transformers, vector, zlib
      }:
      mkDerivation {
        pname = "multilinear-io";
-       version = "0.2.1.2";
-       sha256 = "12kydrh8rzvwlgd634x6swd1yv9pyxa23yh2yxj86mnisb467llj";
+       version = "0.2.3";
+       sha256 = "1ymlx7pg0w33a703mqdr4rd93f828xp6ygs4az1y9j0miwax9y97";
+       revision = "1";
+       editedCabalFile = "0xpf219r7n7hqh7b37mr9scy965mxfh9j871ayaab1mb0s7rglw9";
        libraryHaskellDepends = [
-         aeson base bytestring cereal cereal-vector csv-enumerator either
+         aeson base bytestring cassava cereal cereal-vector conduit either
          multilinear transformers vector zlib
        ];
-       testHaskellDepends = [ base either multilinear transformers ];
+       testHaskellDepends = [
+         base directory either multilinear transformers
+       ];
        benchmarkHaskellDepends = [
-         base criterion deepseq either multilinear transformers
+         base criterion deepseq directory either multilinear transformers
        ];
        description = "Input/output capability for multilinear package";
        license = stdenv.lib.licenses.bsd3;
@@ -152530,8 +152708,8 @@ self: {
      }:
      mkDerivation {
        pname = "nix-derivation";
-       version = "1.0.1";
-       sha256 = "1z36ihzcnll6vpvv8hr95j9vx0j69v7nir6bxgd6wmidpzigkdmc";
+       version = "1.0.2";
+       sha256 = "16xx4817ncgqvhmydbfr35lhgiw34js2n5liyfing3qvbfprmscw";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -152548,18 +152726,18 @@ self: {
 
   "nix-diff" = callPackage
     ({ mkDerivation, attoparsec, base, containers, Diff, mtl
-     , nix-derivation, optparse-generic, system-filepath, text, unix
+     , nix-derivation, optparse-applicative, system-filepath, text, unix
      , vector
      }:
      mkDerivation {
        pname = "nix-diff";
-       version = "1.0.4";
-       sha256 = "1ggsqm8bcfvx3l2nji90gwllkq2v832wihf8msfi9br4mqwx234j";
+       version = "1.0.5";
+       sha256 = "1gs19y4k4aykm3hzpkygdx5wqblcnqxbh3jq3hl18sm8h4cf9871";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
-         attoparsec base containers Diff mtl nix-derivation optparse-generic
-         system-filepath text unix vector
+         attoparsec base containers Diff mtl nix-derivation
+         optparse-applicative system-filepath text unix vector
        ];
        description = "Explain why two Nix derivations differ";
        license = stdenv.lib.licenses.bsd3;
@@ -157690,7 +157868,7 @@ self: {
        maintainers = with stdenv.lib.maintainers; [ peti ];
      }) {};
 
-  "pandoc_2_3_1" = callPackage
+  "pandoc_2_4" = callPackage
     ({ mkDerivation, aeson, aeson-pretty, base, base64-bytestring
      , binary, blaze-html, blaze-markup, bytestring, Cabal
      , case-insensitive, cmark-gfm, containers, criterion, data-default
@@ -157700,13 +157878,14 @@ self: {
      , http-types, JuicyPixels, mtl, network, network-uri, pandoc-types
      , parsec, process, QuickCheck, random, safe, SHA, skylighting
      , split, syb, tagsoup, tasty, tasty-golden, tasty-hunit
-     , tasty-quickcheck, temporary, texmath, text, time, unix
-     , unordered-containers, vector, weigh, xml, zip-archive, zlib
+     , tasty-quickcheck, temporary, texmath, text, time
+     , unicode-transforms, unix, unordered-containers, vector, weigh
+     , xml, zip-archive, zlib
      }:
      mkDerivation {
        pname = "pandoc";
-       version = "2.3.1";
-       sha256 = "1wf38mqny53ygpaii0vfjrk0889ya7mlsi7hvvqjakjndcyqflbl";
+       version = "2.4";
+       sha256 = "1kf1v7zfifh5i1hw5bwdbd78ncp946kx1s501c077vwzdzvcz2ck";
        configureFlags = [ "-fhttps" "-f-trypandoc" ];
        isLibrary = true;
        isExecutable = true;
@@ -157719,8 +157898,8 @@ self: {
          Glob haddock-library hslua hslua-module-text HsYAML HTTP
          http-client http-client-tls http-types JuicyPixels mtl network
          network-uri pandoc-types parsec process random safe SHA skylighting
-         split syb tagsoup temporary texmath text time unix
-         unordered-containers vector xml zip-archive zlib
+         split syb tagsoup temporary texmath text time unicode-transforms
+         unix unordered-containers vector xml zip-archive zlib
        ];
        executableHaskellDepends = [ base ];
        testHaskellDepends = [
@@ -159725,8 +159904,8 @@ self: {
      }:
      mkDerivation {
        pname = "patat";
-       version = "0.8.1.1";
-       sha256 = "19nnf08szakwivm7zqv85hr0vwpflpk455373a3hwhcjgkzdfy19";
+       version = "0.8.1.2";
+       sha256 = "0lvgb0jl0bfzjqpap3gxlhn0mhbwbd15h33l1idpghxqpmzgvczy";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
@@ -160353,12 +160532,14 @@ self: {
        pname = "pcre-heavy";
        version = "1.0.0.2";
        sha256 = "1lfbjgvl55jh226n307c2w8mrb3l1myzbkjh4j0jfcb8nybzcp4a";
+       revision = "1";
+       editedCabalFile = "14pprgwxkiaji3rqhsm0fv454wic6qxm7vy4a475yigadb1vz1ls";
        libraryHaskellDepends = [
          base base-compat bytestring pcre-light semigroups
          string-conversions template-haskell
        ];
        testHaskellDepends = [ base doctest Glob ];
-       description = "A regexp library on top of pcre-light you can actually use";
+       description = "A regexp (regex) library on top of pcre-light you can actually use";
        license = stdenv.lib.licenses.publicDomain;
      }) {};
 
@@ -162001,6 +162182,7 @@ self: {
        ];
        description = "Generate classy lens field accessors for persistent models";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "persistent-test" = callPackage
@@ -164050,18 +164232,16 @@ self: {
   "pipes-s3" = callPackage
     ({ mkDerivation, aws, base, bytestring, exceptions, http-client
      , http-client-tls, http-types, pipes, pipes-bytestring, pipes-safe
-     , QuickCheck, resourcet, tasty, tasty-quickcheck, text
+     , QuickCheck, resourcet, semigroups, tasty, tasty-quickcheck, text
      , transformers
      }:
      mkDerivation {
        pname = "pipes-s3";
-       version = "0.3.0.3";
-       sha256 = "16gm7xjc8vbbajwmq91fj1l5cgd6difrz5g30b8czac4gdgqfppa";
-       revision = "3";
-       editedCabalFile = "14cz2sfyz0q0jrpjwj9a25flvcm7mhjhihg4pr356niyvnx1b01p";
+       version = "0.3.1";
+       sha256 = "1z32mgx3w5xiiaxcc22v492f03xlgkprn3pv1hqfqcfgsnxqbj5l";
        libraryHaskellDepends = [
          aws base bytestring http-client http-client-tls http-types pipes
-         pipes-bytestring pipes-safe resourcet text transformers
+         pipes-bytestring pipes-safe resourcet semigroups text transformers
        ];
        testHaskellDepends = [
          base bytestring exceptions pipes pipes-bytestring pipes-safe
@@ -164672,6 +164852,7 @@ self: {
        ];
        description = "Planet Mitchell";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "plankton" = callPackage
@@ -166100,13 +166281,13 @@ self: {
      }) {};
 
   "port-utils" = callPackage
-    ({ mkDerivation, async, base, hspec, network, stm }:
+    ({ mkDerivation, async, base, hspec, network, stm, transformers }:
      mkDerivation {
        pname = "port-utils";
-       version = "0.1.0.2";
-       sha256 = "0a27xsz4agm4bf1i8nrsmlz509yv65fvf3a8pzaqm6qxj7ir7g8i";
+       version = "0.2.0.0";
+       sha256 = "1lvalwbizmvrrpbl2l1lblbv0c3qln1ln61x61zn26jxq2h8p7g1";
        libraryHaskellDepends = [ base network ];
-       testHaskellDepends = [ async base hspec network stm ];
+       testHaskellDepends = [ async base hspec network stm transformers ];
        description = "Utilities for creating and waiting on ports";
        license = stdenv.lib.licenses.bsd3;
      }) {};
@@ -168140,14 +168321,14 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
-  "pretty-show_1_9_1" = callPackage
+  "pretty-show_1_9_2" = callPackage
     ({ mkDerivation, array, base, filepath, ghc-prim, happy
      , haskell-lexer, pretty, text
      }:
      mkDerivation {
        pname = "pretty-show";
-       version = "1.9.1";
-       sha256 = "0b5diwdkfb2wi6q872fjjnrvysgww7c8nhq55bvccp50n9vs4jhz";
+       version = "1.9.2";
+       sha256 = "01vqa5z364cgj73360rpb4rcysfgfyil9l7gxfp96vzcca3gi37a";
        isLibrary = true;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -171439,8 +171620,8 @@ self: {
      }:
      mkDerivation {
        pname = "purescript-iso";
-       version = "0.0.3";
-       sha256 = "15y761jk2r95gdkv85p7ij9npf3a6dlsyidf8y8djzk3m7j8ya2g";
+       version = "0.0.4";
+       sha256 = "1yqr8yfrc8vjn6h1wsfn0167ca6xj9wcl5a46zn9dklpkx995zyq";
        libraryHaskellDepends = [
          aeson aeson-attoparsec aeson-diff async attoparsec attoparsec-uri
          base bytestring containers deepseq emailaddress monad-control mtl
@@ -172768,10 +172949,9 @@ self: {
     ({ mkDerivation, base, QuickCheck, unfoldable-restricted }:
      mkDerivation {
        pname = "quickcheck-combinators";
-       version = "0.0.4";
-       sha256 = "0i5hv58b8vgqbmwb7j8c9xr6qv0v5n2zjh3a9rab8x6hsdlb0mvv";
+       version = "0.0.5";
+       sha256 = "0qdjls949kmcv8wj3a27p4dz8nb1dq4i99zizkw7qyqn47r9ccxd";
        libraryHaskellDepends = [ base QuickCheck unfoldable-restricted ];
-       description = "Simple type-level combinators for augmenting QuickCheck instances";
        license = stdenv.lib.licenses.bsd3;
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
@@ -181471,6 +181651,7 @@ self: {
        testHaskellDepends = [ base long-double ];
        description = "Correctly-rounded arbitrary-precision floating-point arithmetic";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {inherit (pkgs) gmp; inherit (pkgs) mpfr;};
 
   "rounding" = callPackage
@@ -187580,6 +187761,7 @@ self: {
        ];
        description = "Generate HTTP2 clients from Servant API descriptions";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "servant-iCalendar" = callPackage
@@ -188474,6 +188656,7 @@ self: {
        ];
        description = "Servant swagger ui: Jens-Ole Graulund theme";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "servant-swagger-ui-redoc" = callPackage
@@ -188490,6 +188673,7 @@ self: {
        ];
        description = "Servant swagger ui: ReDoc theme";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "servant-tracing" = callPackage
@@ -190001,6 +190185,19 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "shannon-fano" = callPackage
+    ({ mkDerivation, base, bytestring, QuickCheck, split }:
+     mkDerivation {
+       pname = "shannon-fano";
+       version = "0.1.0.1";
+       sha256 = "11xpz5mi1yk9zcy22fhn6j4xnyifxgn07nd6nrx588h1g6w8r2df";
+       libraryHaskellDepends = [ base bytestring split ];
+       testHaskellDepends = [ base QuickCheck ];
+       description = "Shannon-fano compression algorithm implementation in Haskell";
+       license = stdenv.lib.licenses.gpl3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "shapefile" = callPackage
     ({ mkDerivation, base, binary, bytestring, data-binary-ieee754, dbf
      , filepath, rwlock
@@ -190468,6 +190665,7 @@ self: {
        testHaskellDepends = [ base tasty tasty-hunit tasty-quickcheck ];
        description = "Simple shell scripting from Haskell";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "shift" = callPackage
@@ -191169,6 +191367,7 @@ self: {
        ];
        description = "A simple library for affine and vector spaces";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "simple-atom" = callPackage
@@ -192958,15 +193157,15 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
-  "slave-thread_1_0_2_2" = callPackage
+  "slave-thread_1_0_2_3" = callPackage
     ({ mkDerivation, base, deferred-folds, foldl, HTF, mmorph
      , partial-handler, QuickCheck, quickcheck-instances, rerebase
      , SafeSemaphore, stm-containers, transformers
      }:
      mkDerivation {
        pname = "slave-thread";
-       version = "1.0.2.2";
-       sha256 = "1jf8n989gsxbqkyxj8kd523dxp5bxs9cs4s6jd4j95mvij6pgpgl";
+       version = "1.0.2.3";
+       sha256 = "131zq1lb38mmavzdb2ysmnifmhvglb438q1p31pp5x4pmhdhnglj";
        libraryHaskellDepends = [
          base deferred-folds foldl mmorph partial-handler stm-containers
          transformers
@@ -196993,6 +197192,7 @@ self: {
        ];
        description = "JSON API to HTML website wrapper";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "spritz" = callPackage
@@ -197734,11 +197934,12 @@ self: {
     ({ mkDerivation, base, gdp, ghc-prim, primitive }:
      mkDerivation {
        pname = "st2";
-       version = "0.1.0.0";
-       sha256 = "0gly0l191cwnahdrmgi1i2rx4430b9d684kl9s5frxa3k1711agj";
+       version = "0.1.0.2";
+       sha256 = "0i7v9yacwgf6aj67c4r2n8zcm07jrcff9nl52sx7ylsjs65ym2qz";
        libraryHaskellDepends = [ base gdp ghc-prim primitive ];
        description = "shared heap regions between local mutable state threads";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "stable-heap" = callPackage
@@ -199217,6 +199418,7 @@ self: {
        ];
        description = "A lovely [Dog]StatsD implementation";
        license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "status-notifier-item" = callPackage
@@ -203187,15 +203389,15 @@ self: {
        license = stdenv.lib.licenses.lgpl21;
      }) {};
 
-  "swish_0_10_0_0" = callPackage
+  "swish_0_10_0_1" = callPackage
     ({ mkDerivation, base, containers, directory, filepath, hashable
      , HUnit, intern, mtl, network-uri, old-locale, polyparse
      , semigroups, test-framework, test-framework-hunit, text, time
      }:
      mkDerivation {
        pname = "swish";
-       version = "0.10.0.0";
-       sha256 = "1dm388lwfxrpdbqm3fdk9gjr8pp8y8s02wl9aan86av956g2kr4h";
+       version = "0.10.0.1";
+       sha256 = "1ikqqyra9r79vw2s969kyqh1vgijcr33y7irriylsp51n7pspagk";
        isLibrary = true;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -212453,8 +212655,8 @@ self: {
      }:
      mkDerivation {
        pname = "toodles";
-       version = "0.1.1";
-       sha256 = "1g806bdm6l52yg6q3jni94iacp7sfdacfx6rddnsdzqb0cj6ym0w";
+       version = "0.1.2";
+       sha256 = "0s4smdh8y308a6bwp21k070qc1xnzabab6hv2wrrmdkmmc36wfws";
        isLibrary = false;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -219175,7 +219377,7 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
-  "urlpath_9_0_0_1" = callPackage
+  "urlpath_9_0_1" = callPackage
     ({ mkDerivation, attoparsec-uri, base, exceptions, mmorph
      , monad-control, monad-control-aligned, monad-logger, mtl, path
      , path-extra, resourcet, split, strict, text, transformers
@@ -219183,8 +219385,8 @@ self: {
      }:
      mkDerivation {
        pname = "urlpath";
-       version = "9.0.0.1";
-       sha256 = "009836gw2gmmjb08nqqdklpr967gfnnnk1r5lpy3wjyspky03vgv";
+       version = "9.0.1";
+       sha256 = "0acflpvb0imf2qc2gqbqziv4lk6a5p9gxkvbm0mv3kszqslh7rrg";
        libraryHaskellDepends = [
          attoparsec-uri base exceptions mmorph monad-control
          monad-control-aligned monad-logger mtl path path-extra resourcet
@@ -220992,6 +221194,24 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "vector-binary-instances_0_2_5_1" = callPackage
+    ({ mkDerivation, base, binary, bytestring, deepseq, gauge, tasty
+     , tasty-quickcheck, vector
+     }:
+     mkDerivation {
+       pname = "vector-binary-instances";
+       version = "0.2.5.1";
+       sha256 = "04n5cqm1v95pw1bp68l9drjkxqiy2vswxdq0fy1rqcgxisgvji9r";
+       libraryHaskellDepends = [ base binary vector ];
+       testHaskellDepends = [ base binary tasty tasty-quickcheck vector ];
+       benchmarkHaskellDepends = [
+         base binary bytestring deepseq gauge vector
+       ];
+       description = "Instances of Data.Binary for vector";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "vector-buffer" = callPackage
     ({ mkDerivation, base, deepseq, vector }:
      mkDerivation {
@@ -222250,6 +222470,7 @@ self: {
        testHaskellDepends = [ aeson base hspec roundtrip-aeson ];
        description = "Upload audio files to voicebase to get a transcription";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "void" = callPackage
@@ -222406,7 +222627,7 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
-  "vty_5_25" = callPackage
+  "vty_5_25_1" = callPackage
     ({ mkDerivation, base, blaze-builder, bytestring, Cabal, containers
      , deepseq, directory, filepath, hashable, HUnit, microlens
      , microlens-mtl, microlens-th, mtl, parallel, parsec, QuickCheck
@@ -222417,8 +222638,8 @@ self: {
      }:
      mkDerivation {
        pname = "vty";
-       version = "5.25";
-       sha256 = "1m37q8l4ynnhyln1hkwxrmgysslb5d6nvnvx667q4q004dhrcr91";
+       version = "5.25.1";
+       sha256 = "1x15jlf9x6c8nhdbp6alr17vigclkaf5qy5jpp14g5n568p7karw";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -222563,6 +222784,7 @@ self: {
        ];
        description = "JSON wrangling";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "wacom-daemon" = callPackage
@@ -226512,6 +226734,7 @@ self: {
        executableHaskellDepends = [ base bytestring network unix ];
        description = "A network server to show bottlenecks of GHC";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "wizard" = callPackage
@@ -227581,6 +227804,31 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "ws_0_0_5" = callPackage
+    ({ mkDerivation, async, attoparsec, attoparsec-uri, base
+     , bytestring, exceptions, haskeline, mtl, network
+     , optparse-applicative, strict, text, vector, websockets, wuss
+     }:
+     mkDerivation {
+       pname = "ws";
+       version = "0.0.5";
+       sha256 = "1qj4yq2z7ml88jgcqfy8i1cn1cbmdv56vg7v6b2inh4b4h41yax6";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         async attoparsec-uri base bytestring exceptions haskeline mtl
+         network text websockets wuss
+       ];
+       executableHaskellDepends = [
+         async attoparsec attoparsec-uri base bytestring exceptions
+         haskeline mtl network optparse-applicative strict text vector
+         websockets wuss
+       ];
+       description = "A simple CLI utility for interacting with a websocket";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "ws-chans" = callPackage
     ({ mkDerivation, async, base, http-types, HUnit, network
      , QuickCheck, quickcheck-instances, test-framework
@@ -228057,6 +228305,28 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "x509_1_7_5" = callPackage
+    ({ mkDerivation, asn1-encoding, asn1-parse, asn1-types, base
+     , bytestring, containers, cryptonite, hourglass, memory, mtl, pem
+     , tasty, tasty-quickcheck
+     }:
+     mkDerivation {
+       pname = "x509";
+       version = "1.7.5";
+       sha256 = "1j67c35g8334jx7x32hh6awhr43dplp0qwal5gnlkmx09axzrc5i";
+       libraryHaskellDepends = [
+         asn1-encoding asn1-parse asn1-types base bytestring containers
+         cryptonite hourglass memory mtl pem
+       ];
+       testHaskellDepends = [
+         asn1-types base bytestring cryptonite hourglass mtl tasty
+         tasty-quickcheck
+       ];
+       description = "X509 reader and writer";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "x509-store" = callPackage
     ({ mkDerivation, asn1-encoding, asn1-types, base, bytestring
      , containers, cryptonite, directory, filepath, mtl, pem, tasty
@@ -228075,6 +228345,25 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "x509-store_1_6_7" = callPackage
+    ({ mkDerivation, asn1-encoding, asn1-types, base, bytestring
+     , containers, cryptonite, directory, filepath, mtl, pem, tasty
+     , tasty-hunit, x509
+     }:
+     mkDerivation {
+       pname = "x509-store";
+       version = "1.6.7";
+       sha256 = "1y8yyr1i95jkllg8k0z54k5v4vachp848clc07m33xpxidn3b1lp";
+       libraryHaskellDepends = [
+         asn1-encoding asn1-types base bytestring containers cryptonite
+         directory filepath mtl pem x509
+       ];
+       testHaskellDepends = [ base bytestring tasty tasty-hunit x509 ];
+       description = "X.509 collection accessing and storing methods";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "x509-system" = callPackage
     ({ mkDerivation, base, bytestring, containers, directory, filepath
      , mtl, pem, process, x509, x509-store
@@ -228093,21 +228382,22 @@ self: {
 
   "x509-util" = callPackage
     ({ mkDerivation, asn1-encoding, asn1-types, base, bytestring
-     , cryptonite, directory, hourglass, pem, x509, x509-store
+     , cryptonite, directory, hourglass, memory, pem, x509, x509-store
      , x509-system, x509-validation
      }:
      mkDerivation {
        pname = "x509-util";
-       version = "1.6.4";
-       sha256 = "0qv33r1p1mdl8yskl0hzy3s989y929lk2q23i9qb9fb6w63g6nfb";
+       version = "1.6.5";
+       sha256 = "1d8s1aaymc0bim871cblv1jpy6vnkadxz4spd7wpr90vswkd2hl7";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
          asn1-encoding asn1-types base bytestring cryptonite directory
-         hourglass pem x509 x509-store x509-system x509-validation
+         hourglass memory pem x509 x509-store x509-system x509-validation
        ];
        description = "Utility for X509 certificate and chain";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "x509-validation" = callPackage
@@ -228133,6 +228423,29 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "x509-validation_1_6_11" = callPackage
+    ({ mkDerivation, asn1-encoding, asn1-types, base, bytestring
+     , containers, cryptonite, data-default-class, hourglass, memory
+     , mtl, pem, tasty, tasty-hunit, x509, x509-store
+     }:
+     mkDerivation {
+       pname = "x509-validation";
+       version = "1.6.11";
+       sha256 = "16yihzljql3z8w5rgdl95fv3hgk7yd86kbl9b3glllsark5j2hzr";
+       libraryHaskellDepends = [
+         asn1-encoding asn1-types base bytestring containers cryptonite
+         data-default-class hourglass memory mtl pem x509 x509-store
+       ];
+       testHaskellDepends = [
+         asn1-encoding asn1-types base bytestring cryptonite
+         data-default-class hourglass memory tasty tasty-hunit x509
+         x509-store
+       ];
+       description = "X.509 Certificate and CRL validation";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "x86-64bit" = callPackage
     ({ mkDerivation, base, deepseq, monads-tf, QuickCheck, tardis
      , vector
@@ -229798,6 +230111,8 @@ self: {
        pname = "xmonad-wallpaper";
        version = "0.0.1.4";
        sha256 = "0f6214kqp86xnk1zginjiprnqlj2fzcvh3w5sv3yvqg98mwdd0cg";
+       revision = "1";
+       editedCabalFile = "1vxgv702wgr0k0kzd602v8xv11q5dap4mfhqifnr928bwf9scp28";
        libraryHaskellDepends = [ base magic mtl random unix xmonad ];
        description = "xmonad wallpaper extension";
        license = stdenv.lib.licenses.lgpl3;
@@ -230738,15 +231053,14 @@ self: {
     ({ mkDerivation, base, blank-canvas, stm, time, Yampa }:
      mkDerivation {
        pname = "yampa-canvas";
-       version = "0.2.2";
-       sha256 = "0g1yvb6snnsbvy2f74lrlqff5zgnvfh2f6r8xdwxi61dk71qsz0n";
-       revision = "7";
-       editedCabalFile = "1bj5ncrkwjpvjvrx0s23ksvwwsrybj7zl3sghl1d034wd9r89mxx";
+       version = "0.2.3";
+       sha256 = "0a1pq1psmc4490isr19z4prnqq1w3374vkfmzpw9s20s2p6k5y7r";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [ base blank-canvas stm time Yampa ];
        description = "blank-canvas frontend for Yampa";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "yampa-glfw" = callPackage
@@ -230778,6 +231092,7 @@ self: {
        libraryHaskellDepends = [ base gloss Yampa ];
        description = "A GLOSS backend for Yampa";
        license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "yampa-glut" = callPackage
@@ -230833,6 +231148,7 @@ self: {
        ];
        description = "Testing library for Yampa";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "yampa2048" = callPackage
@@ -233913,6 +234229,7 @@ self: {
        libraryHaskellDepends = [ base ];
        description = "Parser combinators for young padawans";
        license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "yoga" = callPackage
@@ -234344,8 +234661,8 @@ self: {
      }:
      mkDerivation {
        pname = "zephyr";
-       version = "0.2.0";
-       sha256 = "0n0z7s71gjlpra4ghfd51rcz5yqddzzwfdpjnhlxciakrabc5m3f";
+       version = "0.2.1";
+       sha256 = "0yhpy1dwh1axbh3xgxn97vnh616pywz56r7gy6sfvqaxj9bqviha";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [

From db203c84e3cdb2be97f94659c09cb05312f14c1e Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Sun, 4 Nov 2018 12:24:39 +0100
Subject: [PATCH 0517/1129] haskell-hpack: update overrides for the new version

---
 pkgs/development/haskell-modules/configuration-common.nix    | 4 ++--
 pkgs/development/haskell-modules/configuration-ghc-8.4.x.nix | 4 ++--
 pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix | 2 +-
 3 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix
index 56ffd6ee54ee..a34f510ccb9c 100644
--- a/pkgs/development/haskell-modules/configuration-common.nix
+++ b/pkgs/development/haskell-modules/configuration-common.nix
@@ -1065,11 +1065,11 @@ self: super: {
 
   # The tool needs a newer hpack version than the one mandated by LTS-12.x.
   cabal2nix = super.cabal2nix.overrideScope (self: super: {
-    hpack = self.hpack_0_31_0;
+    hpack = self.hpack_0_31_1;
     yaml = self.yaml_0_11_0_0;
   });
   stack2nix = super.stack2nix.overrideScope (self: super: {
-    hpack = self.hpack_0_31_0;
+    hpack = self.hpack_0_31_1;
     yaml = self.yaml_0_11_0_0;
   });
 
diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.4.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.4.x.nix
index 213651405f35..226b437d58b1 100644
--- a/pkgs/development/haskell-modules/configuration-ghc-8.4.x.nix
+++ b/pkgs/development/haskell-modules/configuration-ghc-8.4.x.nix
@@ -63,11 +63,11 @@ self: super: {
   # more verbose but friendlier for Hydra.
   stack = (doJailbreak super.stack).override {
     Cabal = self.Cabal_2_4_0_1;
-    hpack = self.hpack_0_31_0.override { Cabal = self.Cabal_2_4_0_1; };
+    hpack = self.hpack_0_31_1.override { Cabal = self.Cabal_2_4_0_1; };
     yaml = self.yaml_0_11_0_0;
     hackage-security = self.hackage-security.override { Cabal = self.Cabal_2_4_0_1; };
   };
-  hpack_0_31_0 = super.hpack_0_31_0.override {
+  hpack_0_31_1 = super.hpack_0_31_1.override {
     yaml = self.yaml_0_11_0_0;
   };
 
diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
index bf021956593c..ea1ca1175f4a 100644
--- a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
+++ b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
@@ -56,7 +56,7 @@ self: super: {
   hledger = doJailbreak super.hledger;
   hledger-lib = doJailbreak super.hledger-lib;
   hledger-ui = doJailbreak super.hledger-ui;
-  hpack = self.hpack_0_31_0;
+  hpack = self.hpack_0_31_1;
   hslua = self.hslua_1_0_1;
   hslua-module-text = self.hslua-module-text_0_2_0;
   hspec = self.hspec_2_5_8;

From 748ea69fab60ad99f875c7a390f084150cabb17f Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Sun, 4 Nov 2018 12:26:07 +0100
Subject: [PATCH 0518/1129] haskell-hspec: update overrides for the new version

---
 pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
index ea1ca1175f4a..38ead50e57d0 100644
--- a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
+++ b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
@@ -59,7 +59,7 @@ self: super: {
   hpack = self.hpack_0_31_1;
   hslua = self.hslua_1_0_1;
   hslua-module-text = self.hslua-module-text_0_2_0;
-  hspec = self.hspec_2_5_8;
+  hspec = self.hspec_2_5_9;
   hspec-core = self.hspec-core_2_5_8;
   hspec-discover = self.hspec-discover_2_5_8;
   hspec-megaparsec = doJailbreak super.hspec-megaparsec;  # newer versions need megaparsec 7.x

From 627624f5cd8089aa1aedb0170613088fa585f819 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Sun, 4 Nov 2018 12:43:48 +0100
Subject: [PATCH 0519/1129] haskell-hspec-core: update overrides for the new
 version

---
 pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
index 38ead50e57d0..e012b8317b5d 100644
--- a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
+++ b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
@@ -60,7 +60,7 @@ self: super: {
   hslua = self.hslua_1_0_1;
   hslua-module-text = self.hslua-module-text_0_2_0;
   hspec = self.hspec_2_5_9;
-  hspec-core = self.hspec-core_2_5_8;
+  hspec-core = self.hspec-core_2_5_9;
   hspec-discover = self.hspec-discover_2_5_8;
   hspec-megaparsec = doJailbreak super.hspec-megaparsec;  # newer versions need megaparsec 7.x
   hspec-meta = self.hspec-meta_2_5_6;

From 72825b5e3908ea4e768f0783415a589439c6c00f Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Sun, 4 Nov 2018 21:13:21 +0100
Subject: [PATCH 0520/1129] haskell-hspec-discover: update overrides for the
 new version

---
 pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
index e012b8317b5d..03793960da96 100644
--- a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
+++ b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
@@ -61,7 +61,7 @@ self: super: {
   hslua-module-text = self.hslua-module-text_0_2_0;
   hspec = self.hspec_2_5_9;
   hspec-core = self.hspec-core_2_5_9;
-  hspec-discover = self.hspec-discover_2_5_8;
+  hspec-discover = self.hspec-discover_2_5_9;
   hspec-megaparsec = doJailbreak super.hspec-megaparsec;  # newer versions need megaparsec 7.x
   hspec-meta = self.hspec-meta_2_5_6;
   JuicyPixels = self.JuicyPixels_3_3_2;

From 0a74322a5dc52e71e0bdb28c3220d6beb821a6d0 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Mon, 5 Nov 2018 09:47:25 +0100
Subject: [PATCH 0521/1129] haskell-hspec: update overrides for the new version
 some more

---
 .../development/haskell-modules/configuration-ghc-8.6.x.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
index 03793960da96..e1af093b269f 100644
--- a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
+++ b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
@@ -59,9 +59,9 @@ self: super: {
   hpack = self.hpack_0_31_1;
   hslua = self.hslua_1_0_1;
   hslua-module-text = self.hslua-module-text_0_2_0;
-  hspec = self.hspec_2_5_9;
-  hspec-core = self.hspec-core_2_5_9;
-  hspec-discover = self.hspec-discover_2_5_9;
+  hspec = self.hspec_2_6_0;
+  hspec-core = self.hspec-core_2_6_0;
+  hspec-discover = self.hspec-discover_2_6_0;
   hspec-megaparsec = doJailbreak super.hspec-megaparsec;  # newer versions need megaparsec 7.x
   hspec-meta = self.hspec-meta_2_5_6;
   JuicyPixels = self.JuicyPixels_3_3_2;

From 90acab51fecbdd2a2df5627bb04a55ac272b30b9 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Mon, 5 Nov 2018 09:48:46 +0100
Subject: [PATCH 0522/1129] haskell-vty: update overrides for the new version

---
 pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
index e1af093b269f..48f8ca0ef908 100644
--- a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
+++ b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
@@ -74,7 +74,7 @@ self: super: {
   QuickCheck = self.QuickCheck_2_12_6_1;
   semigroupoids = self.semigroupoids_5_3_1;
   tagged = self.tagged_0_8_6;
-  vty = self.vty_5_25;
+  vty = self.vty_5_25_1;
   wizards = doJailbreak super.wizards;
   wl-pprint-extras = doJailbreak super.wl-pprint-extras;
   yaml = self.yaml_0_11_0_0;

From 2b9916c715d23ebfb13850e9d990370697220d98 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Mon, 5 Nov 2018 09:49:11 +0100
Subject: [PATCH 0523/1129] haskell-pandoc: update overrides for the new
 version

---
 pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
index 48f8ca0ef908..4276de9f90d7 100644
--- a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
+++ b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
@@ -107,7 +107,7 @@ self: super: {
   skylighting-core = dontCheck super.skylighting-core;
 
   # https://github.com/jgm/pandoc/issues/4974
-  pandoc = doJailbreak super.pandoc_2_3_1;
+  pandoc = doJailbreak super.pandoc_2_4;
 
   # Break out of "yaml >=0.10.4.0 && <0.11".
   stack = doJailbreak super.stack;

From 8abc1cccfbf5b72f90f71627f8a13ddccf4c3670 Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Mon, 5 Nov 2018 12:55:08 +0100
Subject: [PATCH 0524/1129] SDL: move overrides out of all-packages.nix

Using defaults makes it much easier to understand what the values are.
---
 pkgs/development/libraries/SDL/default.nix  | 14 +++++++-------
 pkgs/development/libraries/SDL2/default.nix | 16 ++++++++--------
 pkgs/top-level/all-packages.nix             | 10 ----------
 3 files changed, 15 insertions(+), 25 deletions(-)

diff --git a/pkgs/development/libraries/SDL/default.nix b/pkgs/development/libraries/SDL/default.nix
index 08a52096d4b1..7ef3c4c89686 100644
--- a/pkgs/development/libraries/SDL/default.nix
+++ b/pkgs/development/libraries/SDL/default.nix
@@ -1,8 +1,8 @@
-{ stdenv, lib, fetchurl, fetchpatch, pkgconfig, audiofile, libcap, libiconv
-, openglSupport ? false, libGL, libGLU
-, alsaSupport ? true, alsaLib
-, x11Support ? stdenv.hostPlatform == stdenv.buildPlatform, libXext, libICE, libXrandr
-, pulseaudioSupport ? true, libpulseaudio
+{ stdenv, config, libGLSupported, fetchurl, fetchpatch, pkgconfig, audiofile, libcap, libiconv
+, openglSupport ? libGLSupported, libGL, libGLU
+, alsaSupport ? stdenv.isLinux, alsaLib
+, x11Support ? !stdenv.isCygwin, libXext, libICE, libXrandr
+, pulseaudioSupport ? config.pulseaudio or stdenv.isLinux, libpulseaudio
 , OpenGL, CoreAudio, CoreServices, AudioUnit, Kernel, Cocoa
 , cf-private
 }:
@@ -10,7 +10,7 @@
 # NOTE: When editing this expression see if the same change applies to
 # SDL2 expression too
 
-with lib;
+with stdenv.lib;
 
 assert !stdenv.isDarwin -> alsaSupport || pulseaudioSupport;
 assert openglSupport -> (stdenv.isDarwin || x11Support && libGL != null && libGLU != null);
@@ -114,7 +114,7 @@ stdenv.mkDerivation rec {
   postFixup = ''
     for lib in $out/lib/*.so* ; do
       if [[ -L "$lib" ]]; then
-        patchelf --set-rpath "$(patchelf --print-rpath $lib):${lib.makeLibraryPath propagatedBuildInputs}" "$lib"
+        patchelf --set-rpath "$(patchelf --print-rpath $lib):${makeLibraryPath propagatedBuildInputs}" "$lib"
       fi
     done
   '';
diff --git a/pkgs/development/libraries/SDL2/default.nix b/pkgs/development/libraries/SDL2/default.nix
index 4b358f68a117..242b1b8a3f58 100644
--- a/pkgs/development/libraries/SDL2/default.nix
+++ b/pkgs/development/libraries/SDL2/default.nix
@@ -1,12 +1,12 @@
-{ stdenv, lib, fetchurl, pkgconfig, pruneLibtoolFiles
-, openglSupport ? false, libGL
-, alsaSupport ? true, alsaLib
-, x11Support ? true, libX11, xproto, libICE, libXi, libXScrnSaver, libXcursor, libXinerama, libXext, libXxf86vm, libXrandr
-, waylandSupport ? true, wayland, wayland-protocols, libxkbcommon
-, dbusSupport ? false, dbus
+{ stdenv, config, libGLSupported, fetchurl, pkgconfig, pruneLibtoolFiles
+, openglSupport ? libGLSupported, libGL
+, alsaSupport ? stdenv.isLinux, alsaLib
+, x11Support ? !stdenv.isCygwin, libX11, xproto, libICE, libXi, libXScrnSaver, libXcursor, libXinerama, libXext, libXxf86vm, libXrandr
+, waylandSupport ? stdenv.isLinux, wayland, wayland-protocols, libxkbcommon
+, dbusSupport ? stdenv.isLinux, dbus
 , udevSupport ? false, udev
 , ibusSupport ? false, ibus
-, pulseaudioSupport ? true, libpulseaudio
+, pulseaudioSupport ? config.pulseaudio or stdenv.isLinux, libpulseaudio
 , AudioUnit, Cocoa, CoreAudio, CoreServices, ForceFeedback, OpenGL
 , audiofile, cf-private, libiconv
 }:
@@ -14,7 +14,7 @@
 # NOTE: When editing this expression see if the same change applies to
 # SDL expression too
 
-with lib;
+with stdenv.lib;
 
 assert !stdenv.isDarwin -> alsaSupport || pulseaudioSupport;
 assert openglSupport -> (stdenv.isDarwin || x11Support && libGL != null);
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 0c61e47ce575..07f0bf2bed2a 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -12122,10 +12122,6 @@ with pkgs;
   schroedinger = callPackage ../development/libraries/schroedinger { };
 
   SDL = callPackage ../development/libraries/SDL {
-    openglSupport = libGLSupported;
-    alsaSupport = stdenv.isLinux;
-    x11Support = !stdenv.isCygwin;
-    pulseaudioSupport = config.pulseaudio or stdenv.isLinux;
     inherit (darwin) cf-private;
     inherit (darwin.apple_sdk.frameworks) OpenGL CoreAudio CoreServices AudioUnit Kernel Cocoa;
   };
@@ -12147,12 +12143,6 @@ with pkgs;
   SDL_ttf = callPackage ../development/libraries/SDL_ttf { };
 
   SDL2 = callPackage ../development/libraries/SDL2 {
-    openglSupport = libGLSupported;
-    alsaSupport = stdenv.isLinux;
-    x11Support = !stdenv.isCygwin;
-    waylandSupport = stdenv.isLinux;
-    udevSupport = stdenv.isLinux;
-    pulseaudioSupport = config.pulseaudio or stdenv.isLinux;
     inherit (darwin) cf-private;
     inherit (darwin.apple_sdk.frameworks) AudioUnit Cocoa CoreAudio CoreServices ForceFeedback OpenGL;
   };

From cd05d5a112c83b80d8b9432842c97c27a9d03a90 Mon Sep 17 00:00:00 2001
From: Vincent Laporte <Vincent.Laporte@gmail.com>
Date: Mon, 5 Nov 2018 14:53:19 +0000
Subject: [PATCH 0525/1129] coqPackages.autosubst: fix build

---
 pkgs/development/coq-modules/autosubst/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/development/coq-modules/autosubst/default.nix b/pkgs/development/coq-modules/autosubst/default.nix
index 9c24e77e0f78..bffa5172b0e4 100644
--- a/pkgs/development/coq-modules/autosubst/default.nix
+++ b/pkgs/development/coq-modules/autosubst/default.nix
@@ -11,6 +11,7 @@ stdenv.mkDerivation rec {
     sha256 = "06pcjbngzwqyncvfwzz88j33wvdj9kizxyg5adp7y6186h8an341";
   };
 
+  buildInputs = [ coq ];
   propagatedBuildInputs = [ mathcomp ];
 
   patches = [./0001-changes-to-work-with-Coq-8.6.patch];

From 63418d527fc46eb9e2570fdf2b9bd443f0ea9dc8 Mon Sep 17 00:00:00 2001
From: Jon Banafato <jon@jonafato.com>
Date: Sun, 4 Nov 2018 20:12:15 -0500
Subject: [PATCH 0526/1129] vocal: 2.2.0 -> 2.3.0

---
 pkgs/applications/audio/vocal/default.nix | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/audio/vocal/default.nix b/pkgs/applications/audio/vocal/default.nix
index 97f59ee5f94f..af8b3ac93949 100644
--- a/pkgs/applications/audio/vocal/default.nix
+++ b/pkgs/applications/audio/vocal/default.nix
@@ -1,9 +1,9 @@
-{ stdenv, fetchFromGitHub, cmake, ninja, pkgconfig, vala, gtk3, libxml2, granite, webkitgtk, clutter-gtk
+{ stdenv, fetchFromGitHub, cmake, ninja, pkgconfig, vala_0_40, gtk3, libxml2, granite, webkitgtk, clutter-gtk
 , clutter-gst, libunity, libnotify, sqlite, gst_all_1, libsoup, json-glib, gnome3, gobjectIntrospection, wrapGAppsHook }:
 
 stdenv.mkDerivation rec {
   pname = "vocal";
-  version = "2.2.0";
+  version = "2.3.0";
 
   name = "${pname}-${version}";
 
@@ -11,7 +11,7 @@ stdenv.mkDerivation rec {
     owner = "needle-and-thread";
     repo = pname;
     rev = version;
-    sha256 = "09cm4azyaa9fmfymygf25gf0klpm5p04k6bc1i90jhw0f1im8sgl";
+    sha256 = "1wkkyai14in4yk3q4qq23wk3l49px2xi8z819y3glna236qsq6qp";
   };
 
   nativeBuildInputs = [
@@ -20,13 +20,14 @@ stdenv.mkDerivation rec {
     libxml2
     ninja
     pkgconfig
-    vala
+    vala_0_40 # should be `elementary.vala` when elementary attribute set is merged
     wrapGAppsHook
   ];
 
   buildInputs = with gst_all_1; [
     clutter-gst
     clutter-gtk
+    gnome3.defaultIconTheme # should be `elementary.defaultIconTheme`when elementary attribute set is merged
     gnome3.libgee
     granite
     gst-plugins-base

From b162b400073c5f526686c67306dbd324503160ea Mon Sep 17 00:00:00 2001
From: aszlig <aszlig@nix.build>
Date: Mon, 5 Nov 2018 16:29:24 +0100
Subject: [PATCH 0527/1129] ip2unix: init at 1.0.0

This tool was initially built specifically for nixcloud to prevent a few
annoying programs from binding to IP sockets.

While initially only accepting a JSON file as input, the tool now has a
proper command line interface and it's also generally usable to turn IP
sockets of any program into Unix sockets.

Another thing that might be even useful for NixOS modules is the
possibility to bend programs into using systemd socket activation.

Signed-off-by: aszlig <aszlig@nix.build>
---
 pkgs/tools/networking/ip2unix/default.nix | 32 +++++++++++++++++++++++
 pkgs/top-level/all-packages.nix           |  2 ++
 2 files changed, 34 insertions(+)
 create mode 100644 pkgs/tools/networking/ip2unix/default.nix

diff --git a/pkgs/tools/networking/ip2unix/default.nix b/pkgs/tools/networking/ip2unix/default.nix
new file mode 100644
index 000000000000..14f8599f7e97
--- /dev/null
+++ b/pkgs/tools/networking/ip2unix/default.nix
@@ -0,0 +1,32 @@
+{ stdenv, fetchFromGitHub, meson, ninja, pkgconfig, libyamlcpp, systemd
+, asciidoctor, python3Packages
+}:
+
+stdenv.mkDerivation rec {
+  name = "ip2unix-${version}";
+  version = "1.0.0";
+
+  src = fetchFromGitHub {
+    owner = "nixcloud";
+    repo = "ip2unix";
+    rev = "v${version}";
+    sha256 = "1s6gyrrzgifr6gagcw4vx9xznxvdl14y14r0d1xc72j69b00zc4q";
+  };
+
+  nativeBuildInputs = [
+    meson ninja pkgconfig asciidoctor
+    python3Packages.pytest python3Packages.pytest-timeout
+  ];
+
+  buildInputs = [ libyamlcpp systemd ];
+
+  doCheck = true;
+
+  meta = {
+    homepage = https://github.com/nixcloud/ip2unix;
+    description = "Turn IP sockets into Unix domain sockets";
+    platforms = stdenv.lib.platforms.linux;
+    license = stdenv.lib.licenses.lgpl3;
+    maintainers = [ stdenv.lib.maintainers.aszlig ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 3cd0cc4887a8..e8aa4618fad2 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -3417,6 +3417,8 @@ with pkgs;
 
   ip2location = callPackage ../tools/networking/ip2location { };
 
+  ip2unix = callPackage ../tools/networking/ip2unix { };
+
   ipad_charge = callPackage ../tools/misc/ipad_charge { };
 
   iperf2 = callPackage ../tools/networking/iperf/2.nix { };

From 8d99a3455b1e47018b10cb1394576341713c6010 Mon Sep 17 00:00:00 2001
From: John Ericson <John.Ericson@Obsidian.Systems>
Date: Mon, 5 Nov 2018 11:27:50 -0500
Subject: [PATCH 0528/1129] release-lib: Fix `pkgsFor`

---
 pkgs/top-level/release-lib.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/top-level/release-lib.nix b/pkgs/top-level/release-lib.nix
index ac11de698b56..957de2dcc307 100644
--- a/pkgs/top-level/release-lib.nix
+++ b/pkgs/top-level/release-lib.nix
@@ -48,7 +48,7 @@ rec {
       else if system == "x86_64-cygwin" then pkgs_x86_64_cygwin
       else abort "unsupported system type: ${system}";
 
-  inherit (pkgsForCross null) pkgsFor;
+  pkgsFor = pkgsForCross null;
 
 
   # More poor man's memoisation

From c853b3482455fccd949b5fd0bc16b44f8bc72f23 Mon Sep 17 00:00:00 2001
From: Brian Olsen <brian@maven-group.org>
Date: Mon, 5 Nov 2018 17:50:34 +0100
Subject: [PATCH 0529/1129] nixos/rspamd: Fix enable for locals and overrides

When implementing #49620 I included an enable option for both the
locals and overrides options but the code writing the files didn't
actually look at enable and so would write the file regardless of its
value. I also set the type to loaOf which should have been attrsOf
since the code was not written to handle the options being lists.

This fixes both of those issues.
---
 nixos/modules/services/mail/rspamd.nix |  9 ++++---
 nixos/tests/rspamd.nix                 | 37 ++++++++++++++++++++------
 2 files changed, 34 insertions(+), 12 deletions(-)

diff --git a/nixos/modules/services/mail/rspamd.nix b/nixos/modules/services/mail/rspamd.nix
index d83d6f1f750c..78a2f37b6ded 100644
--- a/nixos/modules/services/mail/rspamd.nix
+++ b/nixos/modules/services/mail/rspamd.nix
@@ -153,9 +153,10 @@ let
       ${cfg.extraConfig}
    '';
 
+  filterFiles = files: filterAttrs (n: v: v.enable) files;
   rspamdDir = pkgs.linkFarm "etc-rspamd-dir" (
-    (mapAttrsToList (name: file: { name = "local.d/${name}"; path = file.source; }) cfg.locals) ++
-    (mapAttrsToList (name: file: { name = "override.d/${name}"; path = file.source; }) cfg.overrides) ++
+    (mapAttrsToList (name: file: { name = "local.d/${name}"; path = file.source; }) (filterFiles cfg.locals)) ++
+    (mapAttrsToList (name: file: { name = "override.d/${name}"; path = file.source; }) (filterFiles cfg.overrides)) ++
     (optional (cfg.localLuaRules != null) { name = "rspamd.local.lua"; path = cfg.localLuaRules; }) ++
     [ { name = "rspamd.conf"; path = rspamdConfFile; } ]
   );
@@ -207,7 +208,7 @@ in
       };
 
       locals = mkOption {
-        type = with types; loaOf (submodule (configFileModule "locals"));
+        type = with types; attrsOf (submodule (configFileModule "locals"));
         default = {};
         description = ''
           Local configuration files, written into <filename>/etc/rspamd/local.d/{name}</filename>.
@@ -220,7 +221,7 @@ in
       };
 
       overrides = mkOption {
-        type = with types; loaOf (submodule (configFileModule "overrides"));
+        type = with types; attrsOf (submodule (configFileModule "overrides"));
         default = {};
         description = ''
           Overridden configuration files, written into <filename>/etc/rspamd/override.d/{name}</filename>.
diff --git a/nixos/tests/rspamd.nix b/nixos/tests/rspamd.nix
index af765f37b91b..a744760412d5 100644
--- a/nixos/tests/rspamd.nix
+++ b/nixos/tests/rspamd.nix
@@ -110,16 +110,33 @@ in
       '';
       services.rspamd = {
         enable = true;
-        locals."groups.conf".text = ''
-          group "cows" {
-            symbol {
-              NO_MUH = {
-                weight = 1.0;
-                description = "Mails should not muh";
+        locals = {
+          "antivirus.conf" = mkIf false { text = ''
+              clamav {
+                action = "reject";
+                symbol = "CLAM_VIRUS";
+                type = "clamav";
+                log_clean = true;
+                servers = "/run/clamav/clamd.ctl";
+              }
+            '';};
+          "redis.conf" = {
+            enable = false;
+            text = ''
+              servers = "127.0.0.1";
+            '';
+          };
+          "groups.conf".text = ''
+            group "cows" {
+              symbol {
+                NO_MUH = {
+                  weight = 1.0;
+                  description = "Mails should not muh";
+                }
               }
             }
-          }
-        '';
+          '';
+        };
         localLuaRules = pkgs.writeText "rspamd.local.lua" ''
           local rspamd_logger = require "rspamd_logger"
           rspamd_config.NO_MUH = {
@@ -152,6 +169,10 @@ in
       $machine->log($machine->succeed("cat /etc/rspamd/rspamd.conf"));
       $machine->log($machine->succeed("cat /etc/rspamd/rspamd.local.lua"));
       $machine->log($machine->succeed("cat /etc/rspamd/local.d/groups.conf"));
+      # Verify that redis.conf was not written
+      $machine->fail("cat /etc/rspamd/local.d/redis.conf >&2");
+      # Verify that antivirus.conf was not written
+      $machine->fail("cat /etc/rspamd/local.d/antivirus.conf >&2");
       ${checkSocket "/run/rspamd/rspamd.sock" "rspamd" "rspamd" "660" }
       $machine->log($machine->succeed("curl --unix-socket /run/rspamd/rspamd.sock http://localhost/ping"));
       $machine->log($machine->succeed("rspamc -h 127.0.0.1:11334 stat"));

From 7cc369c9d5fa9d37783a1b0f217da7848d855f1e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Th=C3=A9o=20Zimmermann?=
 <theo.zimmermann@univ-paris-diderot.fr>
Date: Mon, 5 Nov 2018 14:19:16 +0100
Subject: [PATCH 0530/1129] coqPackages.ssreflect: refactor choice of source
 version

---
 .../coq-modules/mathcomp/default.nix          | 30 ++++++++-----------
 .../coq-modules/ssreflect/default.nix         | 26 +++++++---------
 2 files changed, 22 insertions(+), 34 deletions(-)

diff --git a/pkgs/development/coq-modules/mathcomp/default.nix b/pkgs/development/coq-modules/mathcomp/default.nix
index 99a6fe311a01..c99744168dbc 100644
--- a/pkgs/development/coq-modules/mathcomp/default.nix
+++ b/pkgs/development/coq-modules/mathcomp/default.nix
@@ -2,26 +2,20 @@
 , graphviz, withDoc ? false
 }:
 
-let params =
-
-  let param_1_7 = {
-      version = "1.7.0";
-      sha256 = "05zgyi4wmasi1rcyn5jq42w0bi9713q9m8dl1fdgl66nmacixh39";
-  }; in
+let param =
 
+  if stdenv.lib.versionAtLeast coq.coq-version "8.6" then
   {
-    "8.5" =  {
-      version = "1.6.1";
-      sha256 = "1j9ylggjzrxz1i2hdl2yhsvmvy5z6l4rprwx7604401080p5sgjw";
-    };
+    version = "1.7.0";
+    sha256 = "05zgyi4wmasi1rcyn5jq42w0bi9713q9m8dl1fdgl66nmacixh39";
+  }
+  else if stdenv.lib.versionAtLeast coq.coq-version "8.5" then
+  {
+    version = "1.6.1";
+    sha256 = "1j9ylggjzrxz1i2hdl2yhsvmvy5z6l4rprwx7604401080p5sgjw";
+  }
+  else throw "No version of math-comp is available for Coq ${coq.coq-version}";
 
-    "8.6" = param_1_7;
-    "8.7" = param_1_7;
-    "8.8" = param_1_7;
-    "8.9" = param_1_7;
-
-  };
-  param = params."${coq.coq-version}";
 in
 
 stdenv.mkDerivation {
@@ -59,7 +53,7 @@ stdenv.mkDerivation {
   };
 
   passthru = {
-    compatibleCoqVersions = v: builtins.hasAttr v params;
+    compatibleCoqVersions = v: stdenv.lib.versionAtLeast v "8.5";
   };
 
 }
diff --git a/pkgs/development/coq-modules/ssreflect/default.nix b/pkgs/development/coq-modules/ssreflect/default.nix
index 840189e347a5..300b00afce1e 100644
--- a/pkgs/development/coq-modules/ssreflect/default.nix
+++ b/pkgs/development/coq-modules/ssreflect/default.nix
@@ -2,26 +2,20 @@
 , graphviz, withDoc ? false
 }:
 
-let params =
+let param =
 
-  let param_1_7 = {
+  if stdenv.lib.versionAtLeast coq.coq-version "8.6" then
+  {
     version = "1.7.0";
     sha256 = "05zgyi4wmasi1rcyn5jq42w0bi9713q9m8dl1fdgl66nmacixh39";
-  }; in
-
+  }
+  else if stdenv.lib.versionAtLeast coq.coq-version "8.5" then
   {
-    "8.5" =  {
-      version = "1.6.1";
-      sha256 = "1j9ylggjzrxz1i2hdl2yhsvmvy5z6l4rprwx7604401080p5sgjw";
-    };
+    version = "1.6.1";
+    sha256 = "1j9ylggjzrxz1i2hdl2yhsvmvy5z6l4rprwx7604401080p5sgjw";
+  }
+  else throw "No version of SSReflect is available for Coq ${coq.coq-version}";
 
-    "8.6" = param_1_7;
-    "8.7" = param_1_7;
-    "8.8" = param_1_7;
-    "8.9" = param_1_7;
-
-  };
-  param = params."${coq.coq-version}";
 in
 
 stdenv.mkDerivation {
@@ -60,7 +54,7 @@ stdenv.mkDerivation {
   };
 
   passthru = {
-    compatibleCoqVersions = v: builtins.hasAttr v params;
+    compatibleCoqVersions = v: stdenv.lib.versionAtLeast v "8.5";
   };
 
 }

From c8e480b4dab4fe8c40d84a9d48c4a79a5a1cc7e9 Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Mon, 5 Nov 2018 19:12:46 +0100
Subject: [PATCH 0531/1129] atomicparsley: include cf-private on darwin

    Undefined symbols for architecture x86_64:
      "_OBJC_CLASS_$_NSDictionary", referenced from:
          objc-class-ref in nsfile.o
          objc-class-ref in nsimage.o
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/tools/video/atomicparsley/default.nix | 14 +++++++++-----
 pkgs/top-level/all-packages.nix            |  5 ++++-
 2 files changed, 13 insertions(+), 6 deletions(-)

diff --git a/pkgs/tools/video/atomicparsley/default.nix b/pkgs/tools/video/atomicparsley/default.nix
index 701850758bcb..74f4c562102c 100644
--- a/pkgs/tools/video/atomicparsley/default.nix
+++ b/pkgs/tools/video/atomicparsley/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchhg, autoreconfHook, zlib, darwin }:
+{ stdenv, fetchhg, autoreconfHook, zlib, cf-private, Cocoa }:
 
 stdenv.mkDerivation rec {
   name = "atomicparsley-${version}";
@@ -9,10 +9,14 @@ stdenv.mkDerivation rec {
     sha256 = "05n4kbn91ps52h3wi1qb2jwygjsc01qzx4lgkv5mvwl5i49rj8fm";
   };
 
-  buildInputs =
-    [ autoreconfHook
-      zlib
-    ] ++ stdenv.lib.optional stdenv.isDarwin darwin.apple_sdk.frameworks.Cocoa;
+  nativeBuildInputs = [ autoreconfHook ];
+
+  buildInputs = [ zlib ]
+    ++ stdenv.lib.optionals stdenv.isDarwin [
+      Cocoa
+      # Needed for OBJC_CLASS_$_NSDictionary symbols.
+      cf-private
+    ];
 
   installPhase = "install -D AtomicParsley $out/bin/AtomicParsley";
 
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 07f0bf2bed2a..1d36b9a6de93 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -571,7 +571,10 @@ with pkgs;
     gsl = gsl_1;
   };
 
-  atomicparsley = callPackage ../tools/video/atomicparsley { };
+  atomicparsley = callPackage ../tools/video/atomicparsley {
+    inherit (darwin) cf-private;
+    inherit (darwin.apple_sdk.frameworks) Cocoa;
+  };
 
   autoflake = callPackage ../development/tools/analysis/autoflake { };
 

From 7fd359f2f920bb6ffde09e06f6792b6fd7483bd7 Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Mon, 5 Nov 2018 19:57:12 +0100
Subject: [PATCH 0532/1129] pinentry_mac: add cf-private

    Undefined symbols for architecture x86_64:
      "_OBJC_CLASS_$_NSArray", referenced from:
          objc-class-ref in GPGDefaults.o
      "_OBJC_CLASS_$_NSDictionary", referenced from:
          objc-class-ref in PinentryController.o
          objc-class-ref in GPGDefaults.o
          objc-class-ref in KeychainSupport.o
      "_OBJC_CLASS_$_NSMutableDictionary", referenced from:
          objc-class-ref in GPGDefaults.o
      "_OBJC_CLASS_$_NSSet", referenced from:
          objc-class-ref in GPGDefaults.o
      "_OBJC_CLASS_$_NSUserDefaults", referenced from:
          objc-class-ref in GPGDefaults.o
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/tools/security/pinentry/mac.nix | 9 +++++++--
 pkgs/top-level/all-packages.nix      | 1 +
 2 files changed, 8 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/security/pinentry/mac.nix b/pkgs/tools/security/pinentry/mac.nix
index 4acdd6cb897e..8168aa94b3d2 100644
--- a/pkgs/tools/security/pinentry/mac.nix
+++ b/pkgs/tools/security/pinentry/mac.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, xcbuildHook, libiconv, Cocoa, ncurses }:
+{ stdenv, fetchFromGitHub, xcbuildHook, libiconv, Cocoa, ncurses, cf-private }:
 
 stdenv.mkDerivation rec {
   name = "pinentry-mac-0.9.4";
@@ -11,7 +11,12 @@ stdenv.mkDerivation rec {
   };
 
   nativeBuildInputs = [ xcbuildHook ];
-  buildInputs = [ libiconv Cocoa ncurses ];
+
+  buildInputs = [
+    libiconv Cocoa ncurses
+    # Needed for OBJC_CLASS_$_NSArray symbols.
+    cf-private
+  ];
 
   installPhase = ''
     mkdir -p $out/Applications
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 1d36b9a6de93..db7dd73001d9 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -4779,6 +4779,7 @@ with pkgs;
   };
 
   pinentry_mac = callPackage ../tools/security/pinentry/mac.nix {
+    inherit (darwin) cf-private;
     inherit (darwin.apple_sdk.frameworks) Cocoa;
   };
 

From 1b111df290f9c5a0466c10f0c5a7b188960085d2 Mon Sep 17 00:00:00 2001
From: Jan Path <jan@jpath.de>
Date: Mon, 5 Nov 2018 20:16:51 +0100
Subject: [PATCH 0533/1129] docs: Remove redundancy

---
 doc/quick-start.xml | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/doc/quick-start.xml b/doc/quick-start.xml
index b9e6d789404a..8dd673ed2733 100644
--- a/doc/quick-start.xml
+++ b/doc/quick-start.xml
@@ -147,8 +147,8 @@ $ git add pkgs/development/libraries/libfoo/default.nix</screen>
       </listitem>
       <listitem>
        <para>
-        You can use <command>nix-prefetch-url</command> (or similar
-        nix-prefetch-git, etc) <replaceable>url</replaceable> to get the
+        You can use <command>nix-prefetch-url</command>
+        <replaceable>url</replaceable> to get the
         SHA-256 hash of source distributions. There are similar commands as
         <command>nix-prefetch-git</command> and
         <command>nix-prefetch-hg</command> available in

From d4b7c2b88f3b121429a08c04cb50dcef48319b8f Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Mon, 5 Nov 2018 20:30:02 +0100
Subject: [PATCH 0534/1129] vim: add cf-private on darwin

    Undefined symbols for architecture x86_64:
      "_OBJC_CLASS_$_NSArray", referenced from:
          objc-class-ref in os_macosx.o
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/applications/editors/vim/default.nix | 8 ++++++--
 pkgs/top-level/all-packages.nix           | 1 +
 2 files changed, 7 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/editors/vim/default.nix b/pkgs/applications/editors/vim/default.nix
index 26cd61d182bd..2f34a6ddeb6b 100644
--- a/pkgs/applications/editors/vim/default.nix
+++ b/pkgs/applications/editors/vim/default.nix
@@ -6,7 +6,7 @@
     sha256 = "18ifhv5q9prd175q3vxbqf6qyvkk6bc7d2lhqdk0q78i68kv9y0c";
   }
 # apple frameworks
-, Carbon, Cocoa
+, cf-private, Carbon, Cocoa
 }:
 
 let
@@ -19,7 +19,11 @@ stdenv.mkDerivation rec {
 
   nativeBuildInputs = [ gettext pkgconfig ];
   buildInputs = [ ncurses ]
-    ++ stdenv.lib.optionals stdenv.hostPlatform.isDarwin [ Carbon Cocoa ];
+    ++ stdenv.lib.optionals stdenv.hostPlatform.isDarwin [
+      Carbon Cocoa
+      # Needed for OBJC_CLASS_$_NSArray symbols.
+      cf-private
+    ];
 
   configureFlags = [
     "--enable-multibyte"
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index db7dd73001d9..fd464eed8efa 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -19378,6 +19378,7 @@ with pkgs;
   };
 
   vim = callPackage ../applications/editors/vim {
+    inherit (darwin) cf-private;
     inherit (darwin.apple_sdk.frameworks) Carbon Cocoa;
   };
 

From 21eeb00a08d53df3e55f98d0fd09ef3ba9db73af Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Sun, 4 Nov 2018 20:15:05 -0600
Subject: [PATCH 0535/1129] treewide: get rid of osx cmake flags

Flags that we now set globally:

- CMAKE_OSX_SYSROOT
- CMAKE_OSX_DEPLOYMENT_TARGET

can now be removed.

(cherry picked from commit 8742d5de30dfe2447c0fb56a2e7410b402effc80)
---
 pkgs/development/libraries/libui/default.nix | 6 +-----
 pkgs/development/libraries/pcl/default.nix   | 1 -
 pkgs/development/libraries/vtk/default.nix   | 2 --
 pkgs/development/mobile/xpwn/default.nix     | 4 ----
 4 files changed, 1 insertion(+), 12 deletions(-)

diff --git a/pkgs/development/libraries/libui/default.nix b/pkgs/development/libraries/libui/default.nix
index 9eb2fe04fe68..150e299ac422 100644
--- a/pkgs/development/libraries/libui/default.nix
+++ b/pkgs/development/libraries/libui/default.nix
@@ -13,7 +13,7 @@ in
       sha256 = "1lpbfa298c61aarlzgp7vghrmxg1274pzxh1j9isv8x758gk6mfn";
     };
 
-  nativeBuildInputs = [ pkgconfig ];
+    nativeBuildInputs = [ pkgconfig ];
     buildInputs = [ cmake ] ++
       (if backend == "darwin" then [darwin.apple_sdk.frameworks.Cocoa]
        else if backend == "unix" then [gtk3]
@@ -22,10 +22,6 @@ in
     preConfigure = stdenv.lib.optionalString stdenv.isDarwin ''
       sed -i 's/set(CMAKE_OSX_DEPLOYMENT_TARGET "10.8")//' ./CMakeLists.txt
     '';
-    cmakeFlags = stdenv.lib.optionals stdenv.isDarwin [
-      "-DCMAKE_OSX_SYSROOT="
-      "-DCMAKE_OSX_DEPLOYMENT_TARGET="
-    ];
 
     installPhase = ''
       mkdir -p $out/{include,lib}
diff --git a/pkgs/development/libraries/pcl/default.nix b/pkgs/development/libraries/pcl/default.nix
index 9fb2e0b7fedb..14eff45e4a17 100644
--- a/pkgs/development/libraries/pcl/default.nix
+++ b/pkgs/development/libraries/pcl/default.nix
@@ -29,7 +29,6 @@ stdenv.mkDerivation rec {
 
     ++ stdenv.lib.optionals stdenv.isDarwin [ Cocoa AGL cf-private ];
   cmakeFlags = stdenv.lib.optionals stdenv.isDarwin [
-    "-DCMAKE_OSX_SYSROOT=" "-DCMAKE_OSX_DEPLOYMENT_TARGET="
     "-DOPENGL_INCLUDE_DIR=${OpenGL}/Library/Frameworks"
   ];
 
diff --git a/pkgs/development/libraries/vtk/default.nix b/pkgs/development/libraries/vtk/default.nix
index b85d76640cf0..afd29aeb0063 100644
--- a/pkgs/development/libraries/vtk/default.nix
+++ b/pkgs/development/libraries/vtk/default.nix
@@ -41,8 +41,6 @@ stdenv.mkDerivation rec {
   cmakeFlags = [ "-DCMAKE_C_FLAGS=-fPIC" "-DCMAKE_CXX_FLAGS=-fPIC" ]
     ++ optional (qtLib != null) [ "-DVTK_USE_QT:BOOL=ON" ]
     ++ optional stdenv.isDarwin [ "-DBUILD_TESTING:BOOL=OFF"
-                                  "-DCMAKE_OSX_SYSROOT="
-                                  "-DCMAKE_OSX_DEPLOYMENT_TARGET="
                                   "-DOPENGL_INCLUDE_DIR=${OpenGL}/Library/Frameworks" ];
 
   postPatch = stdenv.lib.optionalString stdenv.isDarwin ''
diff --git a/pkgs/development/mobile/xpwn/default.nix b/pkgs/development/mobile/xpwn/default.nix
index d5ffb7f6c017..d62902e4f6e4 100644
--- a/pkgs/development/mobile/xpwn/default.nix
+++ b/pkgs/development/mobile/xpwn/default.nix
@@ -20,10 +20,6 @@ stdenv.mkDerivation {
 
   buildInputs = [ cmake zlib libpng bzip2 libusb openssl ];
 
-  cmakeFlags = [
-    "-DCMAKE_OSX_DEPLOYMENT_TARGET="
-  ];
-
   meta = with stdenv.lib; {
     homepage    = "http://planetbeing.lighthouseapp.com/projects/15246-xpwn";
     description = "Custom NOR firmware loader/IPSW generator for the iPhone";

From ada49ba736f65dfe444bbf4585eb16c10409b128 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Mon, 5 Nov 2018 12:34:24 -0600
Subject: [PATCH 0536/1129] talloc: use fixDarwinDylibNames
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

The makefile isn’t setting install_name properly causing issues on
macOS. fixDarwinDylibNames seems to fix this.
---
 pkgs/development/libraries/talloc/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/development/libraries/talloc/default.nix b/pkgs/development/libraries/talloc/default.nix
index 77c3c6458ade..7c758d298357 100644
--- a/pkgs/development/libraries/talloc/default.nix
+++ b/pkgs/development/libraries/talloc/default.nix
@@ -1,5 +1,5 @@
 { stdenv, fetchurl, python, pkgconfig, readline, libxslt
-, docbook_xsl, docbook_xml_dtd_42
+, docbook_xsl, docbook_xml_dtd_42, fixDarwinDylibNames
 }:
 
 stdenv.mkDerivation rec {
@@ -10,13 +10,13 @@ stdenv.mkDerivation rec {
     sha256 = "1kk76dyav41ip7ddbbf04yfydb4jvywzi2ps0z2vla56aqkn11di";
   };
 
-  nativeBuildInputs = [ pkgconfig ];
+  nativeBuildInputs = [ pkgconfig fixDarwinDylibNames ];
   buildInputs = [
     python readline libxslt docbook_xsl docbook_xml_dtd_42
   ];
 
-  preConfigure = ''
-    sed -i 's,#!/usr/bin/env python,#!${python}/bin/python,g' buildtools/bin/waf
+  prePatch = ''
+    patchShebangs buildtools/bin/waf
   '';
 
   configureFlags = [

From a35dae70c31924253dc26eb62f862cf1f18e6ce0 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Mon, 5 Nov 2018 12:47:10 -0600
Subject: [PATCH 0537/1129] notmuch: cleanup

---
 .../mailreaders/notmuch/default.nix           | 55 +++++--------------
 1 file changed, 13 insertions(+), 42 deletions(-)

diff --git a/pkgs/applications/networking/mailreaders/notmuch/default.nix b/pkgs/applications/networking/mailreaders/notmuch/default.nix
index c2c5d18e2f0d..69de3ef5d51c 100644
--- a/pkgs/applications/networking/mailreaders/notmuch/default.nix
+++ b/pkgs/applications/networking/mailreaders/notmuch/default.nix
@@ -1,4 +1,4 @@
-{ fetchurl, stdenv, fixDarwinDylibNames
+{ fetchurl, stdenv
 , pkgconfig, gnupg
 , xapian, gmime, talloc, zlib
 , doxygen, perl
@@ -34,18 +34,11 @@ stdenv.mkDerivation rec {
     bash-completion  # (optional) dependency to install bash completion
     emacs  # (optional) to byte compile emacs code, also needed for tests
     ruby  # (optional) ruby bindings
-    which dtach openssl bash  # test dependencies
-  ]
-  ++ optional stdenv.isDarwin fixDarwinDylibNames
-  ++ optionals (!stdenv.isDarwin) [ gdb man ]; # test dependencies
+  ];
 
   postPatch = ''
     patchShebangs configure
-
-    find test/ -type f -exec \
-      sed -i \
-        -e "1s|#!/usr/bin/env bash|#!${bash}/bin/bash|" \
-        "{}" ";"
+    patchShebangs test/
 
     for src in \
       util/crypto.c \
@@ -54,6 +47,9 @@ stdenv.mkDerivation rec {
       substituteInPlace "$src" \
         --replace \"gpg\" \"${gnupg}/bin/gpg\"
     done
+
+    substituteInPlace lib/Makefile.local \
+      --replace '-install_name $(libdir)' "-install_name $out/lib"
   '';
 
   configureFlags = [ "--zshcompletiondir=$(out)/share/zsh/site-functions" ];
@@ -64,33 +60,6 @@ stdenv.mkDerivation rec {
   enableParallelBuilding = true;
   makeFlags = "V=1";
 
-  preFixup = optionalString stdenv.isDarwin ''
-    set -e
-
-    die() {
-      >&2 echo "$@"
-      exit 1
-    }
-
-    prg="$out/bin/notmuch"
-    lib="$(find "$out/lib" -name 'libnotmuch.?.dylib')"
-
-    [[ -s "$prg" ]] || die "couldn't find notmuch binary"
-    [[ -s "$lib" ]] || die "couldn't find libnotmuch"
-
-    badname="$(otool -L "$prg" | awk '$1 ~ /libtalloc/ { print $1 }')"
-    goodname="$(find "${talloc}/lib" -name 'libtalloc.*.*.*.dylib')"
-
-    [[ -n "$badname" ]]  || die "couldn't find libtalloc reference in binary"
-    [[ -n "$goodname" ]] || die "couldn't find libtalloc in nix store"
-
-    echo "fixing libtalloc link in $lib"
-    install_name_tool -change "$badname" "$goodname" "$lib"
-
-    echo "fixing libtalloc link in $prg"
-    install_name_tool -change "$badname" "$goodname" "$prg"
-  '';
-
   preCheck = let
     test-database = fetchurl {
       url = "https://notmuchmail.org/releases/test-databases/database-v1.tar.xz";
@@ -99,12 +68,14 @@ stdenv.mkDerivation rec {
   in ''
     ln -s ${test-database} test/test-databases/database-v1.tar.xz
   '';
-  doCheck = !stdenv.isDarwin && (versionAtLeast gmime.version "3.0");
-  checkTarget = "test V=1";
+  doCheck = !stdenv.hostPlatform.isDarwin && (versionAtLeast gmime.version "3.0");
+  checkTarget = "test";
+  checkInputs = [
+    which dtach openssl bash
+    gdb man
+  ];
 
-  postInstall = ''
-    make install-man
-  '';
+  installTargets = "install install-man";
 
   dontGzipMan = true; # already compressed
 

From 86bf715c49d576c67c0c0746ca2471981124e530 Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Mon, 5 Nov 2018 20:35:06 +0100
Subject: [PATCH 0538/1129] contacts: add cf-private

    Undefined symbols for architecture x86_64:
      "_OBJC_CLASS_$_NSArray", referenced from:
          objc-class-ref in contacts.o
          objc-class-ref in FormatHelper.o
      "_OBJC_CLASS_$_NSMutableArray", referenced from:
          objc-class-ref in FormatHelper.o
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/tools/misc/contacts/default.nix | 12 +++++++-----
 pkgs/top-level/all-packages.nix      |  1 +
 2 files changed, 8 insertions(+), 5 deletions(-)

diff --git a/pkgs/tools/misc/contacts/default.nix b/pkgs/tools/misc/contacts/default.nix
index dc8f776cef66..b262626b1363 100644
--- a/pkgs/tools/misc/contacts/default.nix
+++ b/pkgs/tools/misc/contacts/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, xcbuildHook, Foundation, AddressBook }:
+{ stdenv, fetchurl, xcbuildHook, cf-private, Foundation, AddressBook }:
 
 stdenv.mkDerivation rec {
   version = "1.1a-3";
@@ -10,16 +10,18 @@ stdenv.mkDerivation rec {
   };
 
   nativeBuildInputs = [ xcbuildHook ];
-  buildInputs = [ Foundation AddressBook ];
+
+  buildInputs = [
+    Foundation AddressBook
+    # Needed for OBJC_CLASS_$_NSArray symbols.
+    cf-private
+  ];
 
   installPhase = ''
     mkdir -p $out/bin
     cp Products/Default/contacts $out/bin
   '';
 
-  ## FIXME: the framework setup hook isn't adding these correctly
-  NIX_LDFLAGS = " -F${Foundation}/Library/Frameworks/ -F${AddressBook}/Library/Frameworks/";
-
   meta = with stdenv.lib; {
     description = "Access contacts from the Mac address book from command-line";
     homepage    = http://www.gnufoo.org/contacts/contacts.html;
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index fd464eed8efa..798b7a29ad3c 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -1172,6 +1172,7 @@ with pkgs;
   codec2 = callPackage ../development/libraries/codec2 { };
 
   contacts = callPackage ../tools/misc/contacts {
+    inherit (darwin) cf-private;
     inherit (darwin.apple_sdk.frameworks) Foundation AddressBook;
   };
 

From 7eaba9af5e4819913ae0ec97c6c6b8ce0143ef4e Mon Sep 17 00:00:00 2001
From: Michael Weiss <dev.primeos@gmail.com>
Date: Mon, 5 Nov 2018 20:27:31 +0100
Subject: [PATCH 0539/1129] scdoc: Use $SOURCE_DATE_EPOCH to produce
 reproducible man pages

Use this patch until something like it is in the upstream repository.
Without it, the current date is used for the man pages, which makes them
non-reproducible.
---
 pkgs/tools/typesetting/scdoc/default.nix      |  2 +
 .../scdoc/use-source-date-epoch.patch         | 75 +++++++++++++++++++
 2 files changed, 77 insertions(+)
 create mode 100644 pkgs/tools/typesetting/scdoc/use-source-date-epoch.patch

diff --git a/pkgs/tools/typesetting/scdoc/default.nix b/pkgs/tools/typesetting/scdoc/default.nix
index 5789f51abd9c..a5bf2d261e1c 100644
--- a/pkgs/tools/typesetting/scdoc/default.nix
+++ b/pkgs/tools/typesetting/scdoc/default.nix
@@ -9,6 +9,8 @@ stdenv.mkDerivation rec {
     sha256 = "0a9sxifzsbj24kjnpc0525i91ni2vkwizhgvwx1m9shvfkiisnc6";
   };
 
+  patches = [ ./use-source-date-epoch.patch ];
+
   postPatch = ''
     substituteInPlace Makefile \
       --replace "-static" "" \
diff --git a/pkgs/tools/typesetting/scdoc/use-source-date-epoch.patch b/pkgs/tools/typesetting/scdoc/use-source-date-epoch.patch
new file mode 100644
index 000000000000..5a2496d63583
--- /dev/null
+++ b/pkgs/tools/typesetting/scdoc/use-source-date-epoch.patch
@@ -0,0 +1,75 @@
+diff --git a/src/main.c b/src/main.c
+index 14b08d2..e2cc33e 100644
+--- a/src/main.c
++++ b/src/main.c
+@@ -3,6 +3,7 @@
+ #include <stdbool.h>
+ #include <stdio.h>
+ #include <stdlib.h>
++#define __USE_XOPEN
+ #include <time.h>
+ #include <unistd.h>
+ #include "string.h"
+@@ -66,10 +67,17 @@ static void parse_preamble(struct parser *p) {
+ 	int section = -1;
+ 	uint32_t ch;
+ 	char date[256];
+-	time_t now;
+-	time(&now);
+-	struct tm *now_tm = localtime(&now);
+-	strftime(date, sizeof(date), "%F", now_tm);
++	char *source_date_epoch = getenv("SOURCE_DATE_EPOCH");
++	if (source_date_epoch != NULL) {
++		struct tm source_date_epoch_tm;
++		strptime(source_date_epoch, "%s", &source_date_epoch_tm);
++		strftime(date, sizeof(date), "%F", &source_date_epoch_tm);
++	} else {
++		time_t now;
++		time(&now);
++		struct tm *now_tm = localtime(&now);
++		strftime(date, sizeof(date), "%F", now_tm);
++	}
+ 	while ((ch = parser_getch(p)) != UTF8_INVALID) {
+ 		if ((ch < 0x80 && isalnum(ch)) || ch == '_' || ch == '-' || ch == '.') {
+ 			assert(str_append_ch(name, ch) != -1);
+diff --git a/test/preamble b/test/preamble
+index 03e2d0c..eeb734b 100755
+--- a/test/preamble
++++ b/test/preamble
+@@ -38,31 +38,31 @@ EOF
+ end 0
+ 
+ begin "Writes the appropriate header"
+-scdoc <<EOF | grep '^\.TH "test" "8" "'"$(date +'%F')"'"' >/dev/null
++scdoc <<EOF | grep '^\.TH "test" "8" "'"$(date +'%F' --date=@${SOURCE_DATE_EPOCH:-$(date +'%s')})"'"' >/dev/null
+ test(8)
+ EOF
+ end 0
+ 
+ begin "Preserves dashes"
+-scdoc <<EOF | grep '^\.TH "test-manual" "8" "'"$(date +'%F')"'"' >/dev/null
++scdoc <<EOF | grep '^\.TH "test-manual" "8" "'"$(date +'%F' --date=@${SOURCE_DATE_EPOCH:-$(date +'%s')})"'"' >/dev/null
+ test-manual(8)
+ EOF
+ end 0
+ 
+ begin "Handles extra footer field"
+-scdoc <<EOF | grep '^\.TH "test-manual" "8" "'"$(date +'%F')"'" "Footer"' >/dev/null
++scdoc <<EOF | grep '^\.TH "test-manual" "8" "'"$(date +'%F' --date=@${SOURCE_DATE_EPOCH:-$(date +'%s')})"'" "Footer"' >/dev/null
+ test-manual(8) "Footer"
+ EOF
+ end 0
+ 
+ begin "Handles both extra fields"
+-scdoc <<EOF | grep '^\.TH "test-manual" "8" "'"$(date +'%F')"'" "Footer" "Header"' >/dev/null
++scdoc <<EOF | grep '^\.TH "test-manual" "8" "'"$(date +'%F' --date=@${SOURCE_DATE_EPOCH:-$(date +'%s')})"'" "Footer" "Header"' >/dev/null
+ test-manual(8) "Footer" "Header"
+ EOF
+ end 0
+ 
+ begin "Emits empty footer correctly"
+-scdoc <<EOF | grep '^\.TH "test-manual" "8" "'"$(date +'%F')"'" "" "Header"' >/dev/null
++scdoc <<EOF | grep '^\.TH "test-manual" "8" "'"$(date +'%F' --date=@${SOURCE_DATE_EPOCH:-$(date +'%s')})"'" "" "Header"' >/dev/null
+ test-manual(8) "" "Header"
+ EOF
+ end 0

From 9e1b883144af1fc7c7444c4c18e7b6c24072d9ac Mon Sep 17 00:00:00 2001
From: volth <volth@webmaster.ms>
Date: Fri, 12 Oct 2018 00:03:46 +0000
Subject: [PATCH 0540/1129] meson: fix cross compilation of systemd

Co-authored-by: Robin Gloster <mail@glob.in>
---
 .../tools/build-managers/meson/default.nix    | 20 +++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

diff --git a/pkgs/development/tools/build-managers/meson/default.nix b/pkgs/development/tools/build-managers/meson/default.nix
index 35ae59af617c..0ba44b1b17a7 100644
--- a/pkgs/development/tools/build-managers/meson/default.nix
+++ b/pkgs/development/tools/build-managers/meson/default.nix
@@ -1,4 +1,4 @@
-{ lib, python3Packages, stdenv, writeTextDir, substituteAll }:
+{ lib, python3Packages, stdenv, writeTextDir, substituteAll, targetPackages }:
 
 python3Packages.buildPythonApplication rec {
   version = "0.46.1";
@@ -47,20 +47,20 @@ python3Packages.buildPythonApplication rec {
 
   crossFile = writeTextDir "cross-file.conf" ''
     [binaries]
-    c = '${stdenv.cc.targetPrefix}cc'
-    cpp = '${stdenv.cc.targetPrefix}c++'
-    ar = '${stdenv.cc.bintools.targetPrefix}ar'
-    strip = '${stdenv.cc.bintools.targetPrefix}strip'
+    c = '${targetPackages.stdenv.cc.targetPrefix}cc'
+    cpp = '${targetPackages.stdenv.cc.targetPrefix}c++'
+    ar = '${targetPackages.stdenv.cc.bintools.targetPrefix}ar'
+    strip = '${targetPackages.stdenv.cc.bintools.targetPrefix}strip'
     pkgconfig = 'pkg-config'
 
     [properties]
     needs_exe_wrapper = true
 
     [host_machine]
-    system = '${stdenv.targetPlatform.parsed.kernel.name}'
-    cpu_family = '${stdenv.targetPlatform.parsed.cpu.family}'
-    cpu = '${stdenv.targetPlatform.parsed.cpu.name}'
-    endian = ${if stdenv.targetPlatform.isLittleEndian then "'little'" else "'big'"}
+    system = '${targetPackages.stdenv.targetPlatform.parsed.kernel.name}'
+    cpu_family = '${targetPackages.stdenv.targetPlatform.parsed.cpu.family}'
+    cpu = '${targetPackages.stdenv.targetPlatform.parsed.cpu.name}'
+    endian = ${if targetPackages.stdenv.targetPlatform.isLittleEndian then "'little'" else "'big'"}
   '';
 
   # 0.45 update enabled tests but they are failing
@@ -70,7 +70,7 @@ python3Packages.buildPythonApplication rec {
 
   inherit (stdenv) cc;
 
-  isCross = stdenv.buildPlatform != stdenv.hostPlatform;
+  isCross = stdenv.targetPlatform != stdenv.hostPlatform;
 
   meta = with lib; {
     homepage = http://mesonbuild.com;

From f495707eb68cf56b4611ed57e2ae7a05740493d9 Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Mon, 5 Nov 2018 21:11:46 +0100
Subject: [PATCH 0541/1129] emacs: include cf-private on darwin and don't
 propagate frameworks

    Undefined symbols for architecture x86_64:
      "_CFNotificationCenterAddObserver", referenced from:
          _macfont_copy_available_families_cache in macfont.o
      "_CFNotificationCenterGetLocalCenter", referenced from:
          _macfont_copy_available_families_cache in macfont.o
      "_NSDefaultRunLoopMode", referenced from:
          _ns_send_appdefined in nsterm.o
          -[EmacsApp run] in nsterm.o
      "_OBJC_CLASS_$_NSArray", referenced from:
          objc-class-ref in nsterm.o
          objc-class-ref in nsmenu.o
          objc-class-ref in nsselect.o
      "_OBJC_CLASS_$_NSData", referenced from:
          objc-class-ref in nsimage.o
      "_OBJC_CLASS_$_NSDate", referenced from:
          objc-class-ref in nsterm.o
      "_OBJC_CLASS_$_NSDictionary", referenced from:
          objc-class-ref in macfont.o
      "_OBJC_CLASS_$_NSLocale", referenced from:
          objc-class-ref in nsterm.o
      "_OBJC_CLASS_$_NSMutableArray", referenced from:
          objc-class-ref in nsterm.o
          objc-class-ref in nsmenu.o
      "_OBJC_CLASS_$_NSMutableDictionary", referenced from:
          objc-class-ref in nsmenu.o
          objc-class-ref in nsselect.o
      "_OBJC_CLASS_$_NSMutableSet", referenced from:
          objc-class-ref in nsterm.o
      "_OBJC_CLASS_$_NSRunLoop", referenced from:
          objc-class-ref in nsmenu.o
      "_OBJC_CLASS_$_NSTimer", referenced from:
          objc-class-ref in nsterm.o
          objc-class-ref in nsmenu.o
      "_OBJC_CLASS_$_NSURL", referenced from:
          objc-class-ref in nsterm.o
          objc-class-ref in nsfns.o
      "_OBJC_CLASS_$_NSUserDefaults", referenced from:
          objc-class-ref in nsterm.o
          objc-class-ref in nsfns.o
      "_OBJC_EHTYPE_$_NSException", referenced from:
          GCC_except_table8 in nsterm.o
          GCC_except_table1 in nsselect.o
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/applications/editors/emacs/default.nix | 11 +++++++----
 pkgs/top-level/all-packages.nix             |  1 +
 2 files changed, 8 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/editors/emacs/default.nix b/pkgs/applications/editors/emacs/default.nix
index c1bfdf8157da..e95d2b615359 100644
--- a/pkgs/applications/editors/emacs/default.nix
+++ b/pkgs/applications/editors/emacs/default.nix
@@ -1,7 +1,7 @@
 { stdenv, lib, fetchurl, ncurses, xlibsWrapper, libXaw, libXpm, Xaw3d
 , pkgconfig, gettext, libXft, dbus, libpng, libjpeg, libungif
 , libtiff, librsvg, gconf, libxml2, imagemagick, gnutls, libselinux
-, alsaLib, cairo, acl, gpm, AppKit, GSS, ImageIO, m17n_lib, libotf
+, alsaLib, cairo, acl, gpm, cf-private, AppKit, GSS, ImageIO, m17n_lib, libotf
 , systemd ? null
 , withX ? !stdenv.isDarwin
 , withNS ? stdenv.isDarwin
@@ -64,9 +64,12 @@ stdenv.mkDerivation rec {
     ++ lib.optional (withX && withGTK2) gtk2-x11
     ++ lib.optionals (withX && withGTK3) [ gtk3-x11 gsettings-desktop-schemas ]
     ++ lib.optional (stdenv.isDarwin && withX) cairo
-    ++ lib.optionals (withX && withXwidgets) [ webkitgtk ];
-
-  propagatedBuildInputs = lib.optionals withNS [ AppKit GSS ImageIO ];
+    ++ lib.optionals (withX && withXwidgets) [ webkitgtk ]
+    ++ lib.optionals withNS [
+      AppKit GSS ImageIO
+      # Needed for CFNotificationCenterAddObserver symbols.
+      cf-private
+    ];
 
   hardeningDisable = [ "format" ];
 
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 798b7a29ad3c..2cc9beb895fd 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -16313,6 +16313,7 @@ with pkgs;
     imagemagick = null;
     acl = null;
     gpm = null;
+    inherit (darwin) cf-private;
     inherit (darwin.apple_sdk.frameworks) AppKit GSS ImageIO;
   };
 

From a06177e65ac17ca0f043f81f6eeb5223290cbaca Mon Sep 17 00:00:00 2001
From: Michael Weiss <dev.primeos@gmail.com>
Date: Mon, 5 Nov 2018 21:54:32 +0100
Subject: [PATCH 0542/1129] jekyll: 3.8.4 -> 3.8.5

---
 .../misc/jekyll/basic/Gemfile.lock            | 18 +++++-----
 .../applications/misc/jekyll/basic/gemset.nix | 32 ++++++++---------
 .../misc/jekyll/full/Gemfile.lock             | 20 +++++------
 pkgs/applications/misc/jekyll/full/gemset.nix | 36 +++++++++----------
 4 files changed, 53 insertions(+), 53 deletions(-)

diff --git a/pkgs/applications/misc/jekyll/basic/Gemfile.lock b/pkgs/applications/misc/jekyll/basic/Gemfile.lock
index a714cdbb0d06..6841bc14c384 100644
--- a/pkgs/applications/misc/jekyll/basic/Gemfile.lock
+++ b/pkgs/applications/misc/jekyll/basic/Gemfile.lock
@@ -9,7 +9,7 @@ GEM
     addressable (2.5.2)
       public_suffix (>= 2.0.2, < 4.0)
     colorator (1.1.0)
-    concurrent-ruby (1.0.5)
+    concurrent-ruby (1.1.1)
     em-websocket (0.5.1)
       eventmachine (>= 0.12.9)
       http_parser.rb (~> 0.6.0)
@@ -23,7 +23,7 @@ GEM
     http_parser.rb (0.6.0)
     i18n (0.9.5)
       concurrent-ruby (~> 1.0)
-    jekyll (3.8.4)
+    jekyll (3.8.5)
       addressable (~> 2.4)
       colorator (~> 1.0)
       em-websocket (~> 0.5)
@@ -47,14 +47,14 @@ GEM
       jekyll (~> 3.3)
     jekyll-sitemap (1.2.0)
       jekyll (~> 3.3)
-    jekyll-watch (2.0.0)
+    jekyll-watch (2.1.2)
       listen (~> 3.0)
     jemoji (0.10.1)
       gemoji (~> 3.0)
       html-pipeline (~> 2.2)
       jekyll (~> 3.0)
     kramdown (1.17.0)
-    liquid (4.0.0)
+    liquid (4.0.1)
     listen (3.1.5)
       rb-fsevent (~> 0.9, >= 0.9.4)
       rb-inotify (~> 0.9, >= 0.9.7)
@@ -62,18 +62,18 @@ GEM
     mercenary (0.3.6)
     mini_portile2 (2.3.0)
     minitest (5.11.3)
-    nokogiri (1.8.4)
+    nokogiri (1.8.5)
       mini_portile2 (~> 2.3.0)
-    pathutil (0.16.1)
+    pathutil (0.16.2)
       forwardable-extended (~> 2.6)
     public_suffix (3.0.3)
     rb-fsevent (0.10.3)
     rb-inotify (0.9.10)
       ffi (>= 0.5.0, < 2)
-    rouge (3.2.1)
+    rouge (3.3.0)
     ruby_dep (1.5.0)
     safe_yaml (1.0.4)
-    sass (3.5.7)
+    sass (3.6.0)
       sass-listen (~> 4.0.0)
     sass-listen (4.0.0)
       rb-fsevent (~> 0.9, >= 0.9.4)
@@ -96,4 +96,4 @@ DEPENDENCIES
   rouge
 
 BUNDLED WITH
-   1.16.3
+   1.16.4
diff --git a/pkgs/applications/misc/jekyll/basic/gemset.nix b/pkgs/applications/misc/jekyll/basic/gemset.nix
index 7ab1c70a98b4..d680f9255905 100644
--- a/pkgs/applications/misc/jekyll/basic/gemset.nix
+++ b/pkgs/applications/misc/jekyll/basic/gemset.nix
@@ -28,10 +28,10 @@
   concurrent-ruby = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "183lszf5gx84kcpb779v6a2y0mx9sssy8dgppng1z9a505nj1qcf";
+      sha256 = "1bnr2dlj2a11qy3rwh6m1mv5419vy32j2axk3ln7bphyvwn7pli0";
       type = "gem";
     };
-    version = "1.0.5";
+    version = "1.1.1";
   };
   em-websocket = {
     dependencies = ["eventmachine" "http_parser.rb"];
@@ -104,10 +104,10 @@
     dependencies = ["addressable" "colorator" "em-websocket" "i18n" "jekyll-sass-converter" "jekyll-watch" "kramdown" "liquid" "mercenary" "pathutil" "rouge" "safe_yaml"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "01rnf0y7wx4rzh2ag74bg37vkxbg8m4nf450lypgh4khrarr3bhw";
+      sha256 = "1nn2sc308l2mz0yiall4r90l6vy67qp4sy9zapi73a948nd4a5k3";
       type = "gem";
     };
-    version = "3.8.4";
+    version = "3.8.5";
   };
   jekyll-avatar = {
     dependencies = ["jekyll"];
@@ -158,10 +158,10 @@
     dependencies = ["listen"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0m7scvj3ki8bmyx5v8pzibpg6my10nycnc28lip98dskf8iakprp";
+      sha256 = "1s9ly83sp8albvgdff12xy2h4xd8lm6z2fah4lzmk2yvp85jzdzv";
       type = "gem";
     };
-    version = "2.0.0";
+    version = "2.1.2";
   };
   jemoji = {
     dependencies = ["gemoji" "html-pipeline" "jekyll"];
@@ -183,10 +183,10 @@
   liquid = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "17fa0jgwm9a935fyvzy8bysz7j5n1vf1x2wzqkdfd5k08dbw3x2y";
+      sha256 = "0bs9smxgj29s4k76zfj09f7mhd35qwm9zki1yqa4jfwiki8v97nw";
       type = "gem";
     };
-    version = "4.0.0";
+    version = "4.0.1";
   };
   listen = {
     dependencies = ["rb-fsevent" "rb-inotify" "ruby_dep"];
@@ -225,19 +225,19 @@
     dependencies = ["mini_portile2"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "1h9nml9h3m0mpvmh8jfnqvblnz5n5y3mmhgfc38avfmfzdrq9bgc";
+      sha256 = "0byyxrazkfm29ypcx5q4syrv126nvjnf7z6bqi01sqkv4llsi4qz";
       type = "gem";
     };
-    version = "1.8.4";
+    version = "1.8.5";
   };
   pathutil = {
     dependencies = ["forwardable-extended"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0wc18ms1rzi44lpjychyw2a96jcmgxqdvy2949r4vvb5f4p0lgvz";
+      sha256 = "12fm93ljw9fbxmv2krki5k5wkvr7560qy8p4spvb9jiiaqv78fz4";
       type = "gem";
     };
-    version = "0.16.1";
+    version = "0.16.2";
   };
   public_suffix = {
     source = {
@@ -267,10 +267,10 @@
   rouge = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0h79gn2wmn1wix2d27lgiaimccyj8gvizrllyym500pir408x62f";
+      sha256 = "1digsi2s8wyzx8vsqcxasw205lg6s7izx8jypl8rrpjwshmv83ql";
       type = "gem";
     };
-    version = "3.2.1";
+    version = "3.3.0";
   };
   ruby_dep = {
     source = {
@@ -292,10 +292,10 @@
     dependencies = ["sass-listen"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "1sy7xsbgpcy90j5ynbq967yplffp74pvph3r8ivn2sv2b44q6i61";
+      sha256 = "18c6prbw9wl8bqhb2435pd9s0lzarl3g7xf8pmyla28zblvwxmyh";
       type = "gem";
     };
-    version = "3.5.7";
+    version = "3.6.0";
   };
   sass-listen = {
     dependencies = ["rb-fsevent" "rb-inotify"];
diff --git a/pkgs/applications/misc/jekyll/full/Gemfile.lock b/pkgs/applications/misc/jekyll/full/Gemfile.lock
index 01e4f368223c..5fe2d1085001 100644
--- a/pkgs/applications/misc/jekyll/full/Gemfile.lock
+++ b/pkgs/applications/misc/jekyll/full/Gemfile.lock
@@ -16,7 +16,7 @@ GEM
       execjs
     coffee-script-source (1.11.1)
     colorator (1.1.0)
-    concurrent-ruby (1.0.5)
+    concurrent-ruby (1.1.1)
     em-websocket (0.5.1)
       eventmachine (>= 0.12.9)
       http_parser.rb (~> 0.6.0)
@@ -34,7 +34,7 @@ GEM
     http_parser.rb (0.6.0)
     i18n (0.9.5)
       concurrent-ruby (~> 1.0)
-    jekyll (3.8.4)
+    jekyll (3.8.5)
       addressable (~> 2.4)
       colorator (~> 1.0)
       em-websocket (~> 0.5)
@@ -68,14 +68,14 @@ GEM
       jekyll (~> 3.3)
     jekyll-sitemap (1.2.0)
       jekyll (~> 3.3)
-    jekyll-watch (2.0.0)
+    jekyll-watch (2.1.2)
       listen (~> 3.0)
     jemoji (0.10.1)
       gemoji (~> 3.0)
       html-pipeline (~> 2.2)
       jekyll (~> 3.0)
     kramdown (1.17.0)
-    liquid (4.0.0)
+    liquid (4.0.1)
     liquid-c (3.0.0)
       liquid (>= 3.0.0)
     listen (3.1.5)
@@ -90,11 +90,11 @@ GEM
     minitest (5.11.3)
     multi_json (1.13.1)
     multipart-post (2.0.0)
-    nokogiri (1.8.4)
+    nokogiri (1.8.5)
       mini_portile2 (~> 2.3.0)
-    octokit (4.12.0)
+    octokit (4.13.0)
       sawyer (~> 0.8.0, >= 0.5.3)
-    pathutil (0.16.1)
+    pathutil (0.16.2)
       forwardable-extended (~> 2.6)
     public_suffix (3.0.3)
     pygments.rb (1.2.1)
@@ -105,10 +105,10 @@ GEM
     rdiscount (2.2.0.1)
     rdoc (6.0.4)
     redcarpet (3.4.0)
-    rouge (3.2.1)
+    rouge (3.3.0)
     ruby_dep (1.5.0)
     safe_yaml (1.0.4)
-    sass (3.5.7)
+    sass (3.6.0)
       sass-listen (~> 4.0.0)
     sass-listen (4.0.0)
       rb-fsevent (~> 0.9, >= 0.9.4)
@@ -152,4 +152,4 @@ DEPENDENCIES
   yajl-ruby (~> 1.3.1)
 
 BUNDLED WITH
-   1.16.3
+   1.16.4
diff --git a/pkgs/applications/misc/jekyll/full/gemset.nix b/pkgs/applications/misc/jekyll/full/gemset.nix
index 3e92d3f28a01..4e33cd6ccdcf 100644
--- a/pkgs/applications/misc/jekyll/full/gemset.nix
+++ b/pkgs/applications/misc/jekyll/full/gemset.nix
@@ -62,10 +62,10 @@
   concurrent-ruby = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "183lszf5gx84kcpb779v6a2y0mx9sssy8dgppng1z9a505nj1qcf";
+      sha256 = "1bnr2dlj2a11qy3rwh6m1mv5419vy32j2axk3ln7bphyvwn7pli0";
       type = "gem";
     };
-    version = "1.0.5";
+    version = "1.1.1";
   };
   em-websocket = {
     dependencies = ["eventmachine" "http_parser.rb"];
@@ -163,10 +163,10 @@
     dependencies = ["addressable" "colorator" "em-websocket" "i18n" "jekyll-sass-converter" "jekyll-watch" "kramdown" "liquid" "mercenary" "pathutil" "rouge" "safe_yaml"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "01rnf0y7wx4rzh2ag74bg37vkxbg8m4nf450lypgh4khrarr3bhw";
+      sha256 = "1nn2sc308l2mz0yiall4r90l6vy67qp4sy9zapi73a948nd4a5k3";
       type = "gem";
     };
-    version = "3.8.4";
+    version = "3.8.5";
   };
   jekyll-avatar = {
     dependencies = ["jekyll"];
@@ -261,10 +261,10 @@
     dependencies = ["listen"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0m7scvj3ki8bmyx5v8pzibpg6my10nycnc28lip98dskf8iakprp";
+      sha256 = "1s9ly83sp8albvgdff12xy2h4xd8lm6z2fah4lzmk2yvp85jzdzv";
       type = "gem";
     };
-    version = "2.0.0";
+    version = "2.1.2";
   };
   jemoji = {
     dependencies = ["gemoji" "html-pipeline" "jekyll"];
@@ -286,10 +286,10 @@
   liquid = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "17fa0jgwm9a935fyvzy8bysz7j5n1vf1x2wzqkdfd5k08dbw3x2y";
+      sha256 = "0bs9smxgj29s4k76zfj09f7mhd35qwm9zki1yqa4jfwiki8v97nw";
       type = "gem";
     };
-    version = "4.0.0";
+    version = "4.0.1";
   };
   liquid-c = {
     dependencies = ["liquid"];
@@ -370,28 +370,28 @@
     dependencies = ["mini_portile2"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "1h9nml9h3m0mpvmh8jfnqvblnz5n5y3mmhgfc38avfmfzdrq9bgc";
+      sha256 = "0byyxrazkfm29ypcx5q4syrv126nvjnf7z6bqi01sqkv4llsi4qz";
       type = "gem";
     };
-    version = "1.8.4";
+    version = "1.8.5";
   };
   octokit = {
     dependencies = ["sawyer"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "1lki5vlsiijdmhaqdvr29zmcyvrlmkgi0x92hgan2194l2ikfjlh";
+      sha256 = "1yh0yzzqg575ix3y2l2261b9ag82gv2v4f1wczdhcmfbxcz755x6";
       type = "gem";
     };
-    version = "4.12.0";
+    version = "4.13.0";
   };
   pathutil = {
     dependencies = ["forwardable-extended"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0wc18ms1rzi44lpjychyw2a96jcmgxqdvy2949r4vvb5f4p0lgvz";
+      sha256 = "12fm93ljw9fbxmv2krki5k5wkvr7560qy8p4spvb9jiiaqv78fz4";
       type = "gem";
     };
-    version = "0.16.1";
+    version = "0.16.2";
   };
   public_suffix = {
     source = {
@@ -454,10 +454,10 @@
   rouge = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0h79gn2wmn1wix2d27lgiaimccyj8gvizrllyym500pir408x62f";
+      sha256 = "1digsi2s8wyzx8vsqcxasw205lg6s7izx8jypl8rrpjwshmv83ql";
       type = "gem";
     };
-    version = "3.2.1";
+    version = "3.3.0";
   };
   ruby_dep = {
     source = {
@@ -479,10 +479,10 @@
     dependencies = ["sass-listen"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "1sy7xsbgpcy90j5ynbq967yplffp74pvph3r8ivn2sv2b44q6i61";
+      sha256 = "18c6prbw9wl8bqhb2435pd9s0lzarl3g7xf8pmyla28zblvwxmyh";
       type = "gem";
     };
-    version = "3.5.7";
+    version = "3.6.0";
   };
   sass-listen = {
     dependencies = ["rb-fsevent" "rb-inotify"];

From 0d30f7b02307e39d0544022a03b450a1679ed068 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Mon, 5 Nov 2018 15:16:45 -0600
Subject: [PATCH 0543/1129] Update sandbox-shell.nix

---
 pkgs/os-specific/linux/busybox/sandbox-shell.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/os-specific/linux/busybox/sandbox-shell.nix b/pkgs/os-specific/linux/busybox/sandbox-shell.nix
index de8865ba3acc..c2d82ebc487a 100644
--- a/pkgs/os-specific/linux/busybox/sandbox-shell.nix
+++ b/pkgs/os-specific/linux/busybox/sandbox-shell.nix
@@ -3,7 +3,7 @@
 # Minimal shell for use as basic /bin/sh in sandbox builds
 busybox.override {
   # musl roadmap has RISC-V support projected for 1.1.20
-  useMusl = !stdenv.hostPlatform.isRiscV;
+  useMusl = !stdenv.hostPlatform.isRiscV && stdenv.hostPlatform.libc != "bionic";
   enableStatic = true;
   enableMinimal = true;
   extraConfig = ''

From d9f8cf734e800f61e3007939b8812ed6e1e90540 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Carles=20Pag=C3=A8s?= <page@ruiec.cat>
Date: Sun, 4 Nov 2018 01:28:17 +0100
Subject: [PATCH 0544/1129] SDL2: 2.0.8 -> 2.0.9

---
 pkgs/development/libraries/SDL2/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/SDL2/default.nix b/pkgs/development/libraries/SDL2/default.nix
index 7d8f5b2caee6..d445e1ab917e 100644
--- a/pkgs/development/libraries/SDL2/default.nix
+++ b/pkgs/development/libraries/SDL2/default.nix
@@ -21,11 +21,11 @@ assert openglSupport -> (stdenv.isDarwin || x11Support && libGL != null);
 
 stdenv.mkDerivation rec {
   name = "SDL2-${version}";
-  version = "2.0.8";
+  version = "2.0.9";
 
   src = fetchurl {
     url = "https://www.libsdl.org/release/${name}.tar.gz";
-    sha256 = "1v4js1gkr75hzbxzhwzzif0sf9g07234sd23x1vdaqc661bprizd";
+    sha256 = "1c94ndagzkdfqaa838yqg589p1nnqln8mv0hpwfhrkbfczf8cl95";
   };
 
   outputs = [ "out" "dev" ];

From 6ba2b84f49f67840495d150e7e76cfb9cb29b7d2 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Mon, 5 Nov 2018 15:53:05 -0600
Subject: [PATCH 0545/1129] liblapack: add compat aliases

---
 pkgs/top-level/aliases.nix | 2 ++
 1 file changed, 2 insertions(+)

diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix
index 8f5e866ede54..afd8fed91562 100644
--- a/pkgs/top-level/aliases.nix
+++ b/pkgs/top-level/aliases.nix
@@ -163,6 +163,8 @@ mapAliases ({
   libgumbo = gumbo; # added 2018-01-21
   libintlOrEmpty = stdenv.lib.optional (!stdenv.isLinux || stdenv.hostPlatform.libc != "glibc") gettext; # added 2018-03-14
   libjson_rpc_cpp = libjson-rpc-cpp; # added 2017-02-28
+  liblapackWithoutAtlas = liblapack; # added 2018-11-05
+  liblapackWithAtlas = liblapack; # added 2018-11-05
   libmysql = mysql.connector-c; # added # 2017-12-28, this was a misnomer refering to libmysqlclient
   librecad2 = librecad;  # backwards compatibility alias, added 2015-10
   libsysfs = sysfsutils; # added 2018-04-25

From 3a4459a30508419f2498bbcbf85782dabf0178df Mon Sep 17 00:00:00 2001
From: Brian Olsen <brian@maven-group.org>
Date: Tue, 6 Nov 2018 00:26:55 +0100
Subject: [PATCH 0546/1129] nixos/rspamd: Support multiple workers

When the workers option for rspamd was originally implemented it was
based on a flawed understanding of how workers are configured in rspamd.
This meant that while rspamd supports configuring multiple workers of
the same type, so that different controller workers could have different
passwords, the NixOS module did not support this because it would write
an invalid configuration file if you tried.

Specifically a configuration like the one below:

```
workers.controller = {};
workers.controller2 = {
  type = "controller";
};
```

Would result in a rspamd configuration of:

```
worker {
  type = "controller";
  count = 1;
  .include "$CONFDIR/worker-controller.inc"
}
worker "controller2" {
  type = "controller";
  count = 1;
}
```

While to get multiple controller workers it should instead be:

```
worker "controller" {
  type = "controller";
  count = 1;
  .include "$CONFDIR/worker-controller.inc"
}
worker "controller" {
  type = "controller";
  count = 1;
}
```
---
 nixos/modules/services/mail/rspamd.nix |  2 +-
 nixos/tests/rspamd.nix                 | 18 ++++++++++++++++++
 2 files changed, 19 insertions(+), 1 deletion(-)

diff --git a/nixos/modules/services/mail/rspamd.nix b/nixos/modules/services/mail/rspamd.nix
index d83d6f1f750c..78d2e7c262bc 100644
--- a/nixos/modules/services/mail/rspamd.nix
+++ b/nixos/modules/services/mail/rspamd.nix
@@ -139,7 +139,7 @@ let
       }
 
       ${concatStringsSep "\n" (mapAttrsToList (name: value: ''
-        worker ${optionalString (value.name != "normal" && value.name != "controller") "${value.name}"} {
+        worker "${value.type}" {
           type = "${value.type}";
           ${optionalString (value.enable != null)
             "enabled = ${if value.enable != false then "yes" else "no"};"}
diff --git a/nixos/tests/rspamd.nix b/nixos/tests/rspamd.nix
index af765f37b91b..f7c27137be98 100644
--- a/nixos/tests/rspamd.nix
+++ b/nixos/tests/rspamd.nix
@@ -28,6 +28,8 @@ let
       ${checkSocket "/run/rspamd/rspamd.sock" "rspamd" "rspamd" "660" }
       sleep 10;
       $machine->log($machine->succeed("cat /etc/rspamd/rspamd.conf"));
+      $machine->log($machine->succeed("grep 'CONFDIR/worker-controller.inc' /etc/rspamd/rspamd.conf"));
+      $machine->log($machine->succeed("grep 'CONFDIR/worker-normal.inc' /etc/rspamd/rspamd.conf"));
       $machine->log($machine->succeed("systemctl cat rspamd.service"));
       $machine->log($machine->succeed("curl http://localhost:11334/auth"));
       $machine->log($machine->succeed("curl http://127.0.0.1:11334/auth"));
@@ -56,6 +58,8 @@ in
       ${checkSocket "/run/rspamd.sock" "root" "root" "600" }
       ${checkSocket "/run/rspamd-worker.sock" "root" "root" "666" }
       $machine->log($machine->succeed("cat /etc/rspamd/rspamd.conf"));
+      $machine->log($machine->succeed("grep 'CONFDIR/worker-controller.inc' /etc/rspamd/rspamd.conf"));
+      $machine->log($machine->succeed("grep 'CONFDIR/worker-normal.inc' /etc/rspamd/rspamd.conf"));
       $machine->log($machine->succeed("rspamc -h /run/rspamd-worker.sock stat"));
       $machine->log($machine->succeed("curl --unix-socket /run/rspamd-worker.sock http://localhost/ping"));
     '';
@@ -78,6 +82,15 @@ in
           owner = "root";
           group = "root";
         }];
+        workers.controller2 = {
+          type = "controller";
+          bindSockets = [ "0.0.0.0:11335" ];
+          extraConfig = ''
+            static_dir = "''${WWWDIR}";
+            secure_ip = null;
+            password = "verysecretpassword";
+          '';
+        };
       };
     };
 
@@ -87,8 +100,13 @@ in
       ${checkSocket "/run/rspamd.sock" "root" "root" "600" }
       ${checkSocket "/run/rspamd-worker.sock" "root" "root" "666" }
       $machine->log($machine->succeed("cat /etc/rspamd/rspamd.conf"));
+      $machine->log($machine->succeed("grep 'CONFDIR/worker-controller.inc' /etc/rspamd/rspamd.conf"));
+      $machine->log($machine->succeed("grep 'CONFDIR/worker-normal.inc' /etc/rspamd/rspamd.conf"));
+      $machine->log($machine->succeed("grep 'verysecretpassword' /etc/rspamd/rspamd.conf"));
+      $machine->waitUntilSucceeds("journalctl -u rspamd | grep -i 'starting controller process' >&2");
       $machine->log($machine->succeed("rspamc -h /run/rspamd-worker.sock stat"));
       $machine->log($machine->succeed("curl --unix-socket /run/rspamd-worker.sock http://localhost/ping"));
+      $machine->log($machine->succeed("curl http://localhost:11335/ping"));
     '';
   };
   customLuaRules = makeTest {

From 46ef075e7daad1bcaab1d4d1258c7d6c64a87b63 Mon Sep 17 00:00:00 2001
From: Brian Olsen <brian@maven-group.org>
Date: Tue, 6 Nov 2018 00:32:14 +0100
Subject: [PATCH 0547/1129] nixos/rspamd: Add defaults for rspamd_proxy worker

---
 nixos/modules/services/mail/rspamd.nix | 30 ++++++++++++++------------
 1 file changed, 16 insertions(+), 14 deletions(-)

diff --git a/nixos/modules/services/mail/rspamd.nix b/nixos/modules/services/mail/rspamd.nix
index 78d2e7c262bc..3489227f0833 100644
--- a/nixos/modules/services/mail/rspamd.nix
+++ b/nixos/modules/services/mail/rspamd.nix
@@ -58,7 +58,7 @@ let
       };
       type = mkOption {
         type = types.nullOr (types.enum [
-          "normal" "controller" "fuzzy_storage" "proxy" "lua"
+          "normal" "controller" "fuzzy_storage" "rspamd_proxy" "lua"
         ]);
         description = "The type of this worker";
       };
@@ -99,19 +99,21 @@ let
         description = "Additional entries to put verbatim into worker section of rspamd config file.";
       };
     };
-    config = mkIf (name == "normal" || name == "controller" || name == "fuzzy") {
+    config = mkIf (name == "normal" || name == "controller" || name == "fuzzy" || name == "rspamd_proxy") {
       type = mkDefault name;
-      includes = mkDefault [ "$CONFDIR/worker-${name}.inc" ];
-      bindSockets = mkDefault (if name == "normal"
-        then [{
-              socket = "/run/rspamd/rspamd.sock";
-              mode = "0660";
-              owner = cfg.user;
-              group = cfg.group;
-            }]
-        else if name == "controller"
-        then [ "localhost:11334" ]
-        else [] );
+      includes = mkDefault [ "$CONFDIR/worker-${if name == "rspamd_proxy" then "proxy" else name}.inc" ];
+      bindSockets =
+        let
+          unixSocket = name: {
+            mode = "0660";
+            socket = "/run/rspamd/${name}.sock";
+            owner = cfg.user;
+            group = cfg.group;
+          };
+        in mkDefault (if name == "normal" then [(unixSocket "rspamd")]
+          else if name == "controller" then [ "localhost:11334" ]
+          else if name == "rspamd_proxy" then [ (unixSocket "proxy") ]
+          else [] );
     };
   };
 
@@ -284,7 +286,7 @@ in
         description = ''
           User to use when no root privileges are required.
         '';
-       };
+      };
 
       group = mkOption {
         type = types.string;

From fba69f388bbb7ab9f79b646e55ef1ef78daa1213 Mon Sep 17 00:00:00 2001
From: Brian Olsen <brian@maven-group.org>
Date: Tue, 6 Nov 2018 00:34:23 +0100
Subject: [PATCH 0548/1129] nixos/rspamd: Put extraConfig in included files

The lines stored in `extraConfig` and `worker.<name?>.extraConfig`
should take precedent over values from included files but in order to do
this in rspamd UCL they need to be stored in a file that then gets
included with a high priority. This commit uses the overrides option to
store the value of the two `extraConfig` options in `extra-config.inc`
and `worker-<name?>.inc` respectively.
---
 nixos/modules/services/mail/rspamd.nix | 22 +++++++++++++++++++---
 nixos/tests/rspamd.nix                 |  3 ++-
 2 files changed, 21 insertions(+), 4 deletions(-)

diff --git a/nixos/modules/services/mail/rspamd.nix b/nixos/modules/services/mail/rspamd.nix
index 3489227f0833..927fc4d6a356 100644
--- a/nixos/modules/services/mail/rspamd.nix
+++ b/nixos/modules/services/mail/rspamd.nix
@@ -140,7 +140,10 @@ let
         .include(try=true; priority=10) "$LOCAL_CONFDIR/override.d/logging.inc"
       }
 
-      ${concatStringsSep "\n" (mapAttrsToList (name: value: ''
+      ${concatStringsSep "\n" (mapAttrsToList (name: value: let
+          includeName = if name == "rspamd_proxy" then "proxy" else name;
+          tryOverride = if value.extraConfig == "" then "true" else "false";
+        in ''
         worker "${value.type}" {
           type = "${value.type}";
           ${optionalString (value.enable != null)
@@ -148,11 +151,14 @@ let
           ${mkBindSockets value.enable value.bindSockets}
           ${optionalString (value.count != null) "count = ${toString value.count};"}
           ${concatStringsSep "\n  " (map (each: ".include \"${each}\"") value.includes)}
-          ${value.extraConfig}
+          .include(try=true; priority=1,duplicate=merge) "$LOCAL_CONFDIR/local.d/worker-${includeName}.inc"
+          .include(try=${tryOverride}; priority=10) "$LOCAL_CONFDIR/override.d/worker-${includeName}.inc"
         }
       '') cfg.workers)}
 
-      ${cfg.extraConfig}
+      ${optionalString (cfg.extraConfig != "") ''
+        .include(priority=10) "$LOCAL_CONFDIR/override.d/extra-config.inc"
+      ''}
    '';
 
   rspamdDir = pkgs.linkFarm "etc-rspamd-dir" (
@@ -190,6 +196,15 @@ let
         in mkDefault (pkgs.writeText name' config.text));
     };
   };
+
+  configOverrides =
+    (mapAttrs' (n: v: nameValuePair "worker-${if n == "rspamd_proxy" then "proxy" else n}.inc" {
+      text = v.extraConfig;
+    })
+    (filterAttrs (n: v: v.extraConfig != "") cfg.workers))
+    // (if cfg.extraConfig == "" then {} else {
+      "extra-config.inc".text = cfg.extraConfig;
+    });
 in
 
 {
@@ -302,6 +317,7 @@ in
   ###### implementation
 
   config = mkIf cfg.enable {
+    services.rspamd.overrides = configOverrides;
 
     # Allow users to run 'rspamc' and 'rspamadm'.
     environment.systemPackages = [ pkgs.rspamd ];
diff --git a/nixos/tests/rspamd.nix b/nixos/tests/rspamd.nix
index f7c27137be98..ccfe8f7bb0d8 100644
--- a/nixos/tests/rspamd.nix
+++ b/nixos/tests/rspamd.nix
@@ -102,7 +102,8 @@ in
       $machine->log($machine->succeed("cat /etc/rspamd/rspamd.conf"));
       $machine->log($machine->succeed("grep 'CONFDIR/worker-controller.inc' /etc/rspamd/rspamd.conf"));
       $machine->log($machine->succeed("grep 'CONFDIR/worker-normal.inc' /etc/rspamd/rspamd.conf"));
-      $machine->log($machine->succeed("grep 'verysecretpassword' /etc/rspamd/rspamd.conf"));
+      $machine->log($machine->succeed("grep 'LOCAL_CONFDIR/override.d/worker-controller2.inc' /etc/rspamd/rspamd.conf"));
+      $machine->log($machine->succeed("grep 'verysecretpassword' /etc/rspamd/override.d/worker-controller2.inc"));
       $machine->waitUntilSucceeds("journalctl -u rspamd | grep -i 'starting controller process' >&2");
       $machine->log($machine->succeed("rspamc -h /run/rspamd-worker.sock stat"));
       $machine->log($machine->succeed("curl --unix-socket /run/rspamd-worker.sock http://localhost/ping"));

From 290dd06d1422fbac5c1439af6f55ddea3cb5f044 Mon Sep 17 00:00:00 2001
From: lassulus <lassulus@lassul.us>
Date: Mon, 5 Nov 2018 21:48:42 +0100
Subject: [PATCH 0549/1129] dwarf-fortress: fix most of customization options

see #49779
close #49803
---
 pkgs/games/dwarf-fortress/wrapper/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/games/dwarf-fortress/wrapper/default.nix b/pkgs/games/dwarf-fortress/wrapper/default.nix
index 058bb5f72ae6..c1e81bf2b3ac 100644
--- a/pkgs/games/dwarf-fortress/wrapper/default.nix
+++ b/pkgs/games/dwarf-fortress/wrapper/default.nix
@@ -33,7 +33,7 @@ let
          ++ lib.optional enableTWBT twbt.art
          ++ [ dwarf-fortress ];
 
-  fixup = lib.singleton (runCommand "fixup" {} ''
+  fixup = lib.singleton (runCommand "fixup" {} (''
     mkdir -p $out/data/init
     cp ${dwarf-fortress}/data/init/init.txt $out/data/init/init.txt
   '' + lib.optionalString enableDFHack ''
@@ -60,7 +60,7 @@ let
       --replace '[INTRO:YES]' '[INTRO:${unBool enableIntro}]' \
       --replace '[TRUETYPE:YES]' '[TRUETYPE:${unBool enableTruetype}]' \
       --replace '[FPS:NO]' '[FPS:${unBool enableFPS}]'
-  '');
+  ''));
 
   env = buildEnv {
     name = "dwarf-fortress-env-${dwarf-fortress.dfVersion}";

From de009133d4a9cf1fbde924c55e207ebf40fefc40 Mon Sep 17 00:00:00 2001
From: Kier Davis <kierdavis@gmail.com>
Date: Tue, 6 Nov 2018 00:50:00 +0000
Subject: [PATCH 0550/1129] ckb-next: move option renames to
 nixos/modules/rename.nix for consistency

---
 nixos/modules/hardware/ckb-next.nix | 5 -----
 nixos/modules/rename.nix            | 4 ++++
 2 files changed, 4 insertions(+), 5 deletions(-)

diff --git a/nixos/modules/hardware/ckb-next.nix b/nixos/modules/hardware/ckb-next.nix
index 7c8e0f559587..a275fb8fd604 100644
--- a/nixos/modules/hardware/ckb-next.nix
+++ b/nixos/modules/hardware/ckb-next.nix
@@ -7,11 +7,6 @@ let
 
 in
   {
-    imports = [
-      (mkRenamedOptionModule ["hardware" "ckb" "enable"] ["hardware" "ckb-next" "enable"])
-      (mkRenamedOptionModule ["hardware" "ckb" "package"] ["hardware" "ckb-next" "package"])
-    ];
-
     options.hardware.ckb-next = {
       enable = mkEnableOption "the Corsair keyboard/mouse driver";
 
diff --git a/nixos/modules/rename.nix b/nixos/modules/rename.nix
index aa2b5c0b2dfb..dc0a175d5bb8 100644
--- a/nixos/modules/rename.nix
+++ b/nixos/modules/rename.nix
@@ -282,6 +282,10 @@ with lib;
     (mkRenamedOptionModule [ "programs" "man"  "enable" ] [ "documentation" "man"  "enable" ])
     (mkRenamedOptionModule [ "services" "nixosManual" "enable" ] [ "documentation" "nixos" "enable" ])
 
+    # ckb
+    (mkRenamedOptionModule [ "hardware" "ckb" "enable" ] [ "hardware" "ckb-next" "enable" ])
+    (mkRenamedOptionModule [ "hardware" "ckb" "package" ] [ "hardware" "ckb-next" "package" ])
+
   ] ++ (flip map [ "blackboxExporter" "collectdExporter" "fritzboxExporter"
                    "jsonExporter" "minioExporter" "nginxExporter" "nodeExporter"
                    "snmpExporter" "unifiExporter" "varnishExporter" ]

From 5ac0ee6ea8980e9cd04b9600b5875389b0f39583 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Mon, 5 Nov 2018 17:07:54 -0800
Subject: [PATCH 0551/1129] vim-plugins: vim-go: patch go#config#BinPath()
 instead of the caller

---
 pkgs/misc/vim-plugins/overrides.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/misc/vim-plugins/overrides.nix b/pkgs/misc/vim-plugins/overrides.nix
index c1bd45a6b789..eb121798f527 100644
--- a/pkgs/misc/vim-plugins/overrides.nix
+++ b/pkgs/misc/vim-plugins/overrides.nix
@@ -276,8 +276,8 @@ with generated;
     in {
     postPatch = ''
       ${gnused}/bin/sed \
-        -Ee 's@let go_bin_path = go#path#BinPath\(\)@let go_bin_path = "${binPath}"@g' \
-        -i autoload/go/path.vim
+        -Ee 's@"go_bin_path", ""@"go_bin_path", "${binPath}"@g' \
+        -i autoload/go/config.vim
     '';
   });
 

From 335941d29f0dd6cd5dfe79296b9efde658a93083 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Mon, 5 Nov 2018 22:12:40 -0800
Subject: [PATCH 0552/1129] gocode: 2018-10-22 -> 2018-11-05

---
 pkgs/development/tools/gocode/default.nix | 13 ++++---------
 pkgs/development/tools/gocode/deps.nix    |  4 ++--
 2 files changed, 6 insertions(+), 11 deletions(-)

diff --git a/pkgs/development/tools/gocode/default.nix b/pkgs/development/tools/gocode/default.nix
index bb44074dfc75..3351c0e986b3 100644
--- a/pkgs/development/tools/gocode/default.nix
+++ b/pkgs/development/tools/gocode/default.nix
@@ -2,10 +2,11 @@
 
 buildGoPackage rec {
   name = "gocode-unstable-${version}";
-  version = "2018-10-22";
-  rev = "e893215113e5f7594faa3a8eb176c2700c921276";
+  version = "2018-11-05";
+  rev = "0af7a86943a6e0237c90f8aeb74a882e1862c898";
 
   goPackagePath = "github.com/mdempsky/gocode";
+  excludedPackages = ''internal/suggest/testdata'';
 
   # we must allow references to the original `go` package,
   # because `gocode` needs to dig into $GOROOT to provide completions for the
@@ -17,17 +18,11 @@ buildGoPackage rec {
 
     owner = "mdempsky";
     repo = "gocode";
-    sha256 = "1zsll7yghv64890k7skl0g2lg9rsaiisgrfnb8kshsxrcxi1kc2l";
+    sha256 = "0fxqn0v6dbwarn444lc1xrx5vfkcidi73f4ba7l4clsb9qdqgyam";
   };
 
   goDeps = ./deps.nix;
 
-  preBuild = ''
-    # getting an error building the testdata because they contain invalid files
-    # on purpose as part of the testing.
-    rm -r go/src/$goPackagePath/internal/suggest/testdata
-  '';
-
   meta = with stdenv.lib; {
     description = "An autocompletion daemon for the Go programming language";
     longDescription = ''
diff --git a/pkgs/development/tools/gocode/deps.nix b/pkgs/development/tools/gocode/deps.nix
index 4eefdd9c6d04..ac9662697063 100644
--- a/pkgs/development/tools/gocode/deps.nix
+++ b/pkgs/development/tools/gocode/deps.nix
@@ -4,8 +4,8 @@
     fetch = {
       type = "git";
       url = "https://go.googlesource.com/tools";
-      rev = "6fe81c087942f588f40c3f67b41ce284f2f70eee";
-      sha256 = "04yl7rk2lf94bxz74ja5snh7ava9gcnf2yx6y002pfkk538r6w5d";
+      rev = "78dc5bac0cacea7969e98b79c3b86597e0aa4e25";
+      sha256 = "16jg2x1sfm39kz4rchn0gxyq99fnkxw6v51wxriqbs76a2wrznp9";
     };
   }
 ]

From 0f4f5d69a774b3cba1c8cebb4e1a21d6e4212a3b Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Mon, 5 Nov 2018 22:13:40 -0800
Subject: [PATCH 0553/1129] gocode-gomod: init unstable at 2018-10-16

---
 .../tools/gocode-gomod/default.nix            | 50 +++++++++++++++++++
 pkgs/development/tools/gocode-gomod/deps.nix  | 11 ++++
 pkgs/top-level/all-packages.nix               |  2 +
 3 files changed, 63 insertions(+)
 create mode 100644 pkgs/development/tools/gocode-gomod/default.nix
 create mode 100644 pkgs/development/tools/gocode-gomod/deps.nix

diff --git a/pkgs/development/tools/gocode-gomod/default.nix b/pkgs/development/tools/gocode-gomod/default.nix
new file mode 100644
index 000000000000..b0069d3488e0
--- /dev/null
+++ b/pkgs/development/tools/gocode-gomod/default.nix
@@ -0,0 +1,50 @@
+{ stdenv, buildGoPackage, fetchFromGitHub }:
+
+buildGoPackage rec {
+  name = "gocode-gomod-unstable-${version}";
+  version = "2018-10-16";
+  rev = "12640289f65065d652cc942ffa01a52bece1dd53";
+
+  goPackagePath = "github.com/stamblerre/gocode";
+
+  # we must allow references to the original `go` package,
+  # because `gocode` needs to dig into $GOROOT to provide completions for the
+  # standard packages.
+  allowGoReference = true;
+
+  excludedPackages = ''internal/suggest/testdata'';
+
+  src = fetchFromGitHub {
+    inherit rev;
+
+    owner = "stamblerre";
+    repo = "gocode";
+    sha256 = "1avv0b5p2l8pv38m5gg97k57ndr5k9yy0rfkmmwjq96pa221hs1q";
+  };
+
+  goDeps = ./deps.nix;
+
+  postInstall = ''
+    mv $bin/bin/gocode $bin/bin/gocode-gomod
+  '';
+
+  meta = with stdenv.lib; {
+    description = "An autocompletion daemon for the Go programming language";
+    longDescription = ''
+      Gocode is a helper tool which is intended to be integrated with your
+      source code editor, like vim, neovim and emacs. It provides several
+      advanced capabilities, which currently includes:
+
+        - Context-sensitive autocompletion
+
+      It is called daemon, because it uses client/server architecture for
+      caching purposes. In particular, it makes autocompletions very fast.
+      Typical autocompletion time with warm cache is 30ms, which is barely
+      noticeable.
+    '';
+    homepage = https://github.com/stamblerre/gocode;
+    license = licenses.mit;
+    platforms = platforms.all;
+    maintainers = with maintainers; [ kalbasit ];
+  };
+}
diff --git a/pkgs/development/tools/gocode-gomod/deps.nix b/pkgs/development/tools/gocode-gomod/deps.nix
new file mode 100644
index 000000000000..ac9662697063
--- /dev/null
+++ b/pkgs/development/tools/gocode-gomod/deps.nix
@@ -0,0 +1,11 @@
+[
+  {
+    goPackagePath = "golang.org/x/tools";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/tools";
+      rev = "78dc5bac0cacea7969e98b79c3b86597e0aa4e25";
+      sha256 = "16jg2x1sfm39kz4rchn0gxyq99fnkxw6v51wxriqbs76a2wrznp9";
+    };
+  }
+]
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index e8aa4618fad2..28de804b14dd 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -14705,6 +14705,8 @@ with pkgs;
 
   gocode = callPackage ../development/tools/gocode { };
 
+  gocode-gomod = callPackage ../development/tools/gocode-gomod { };
+
   goconst = callPackage ../development/tools/goconst { };
 
   goconvey = callPackage ../development/tools/goconvey { };

From f8f4b17d16050b217f398d69188168f47f9dc1ba Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Mon, 5 Nov 2018 22:14:10 -0800
Subject: [PATCH 0554/1129] vim-plugins: vim-go: add missing binaries gocode,
 gocode-mod and the go-tools

---
 pkgs/misc/vim-plugins/overrides.nix | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/pkgs/misc/vim-plugins/overrides.nix b/pkgs/misc/vim-plugins/overrides.nix
index eb121798f527..64fb9ef9693c 100644
--- a/pkgs/misc/vim-plugins/overrides.nix
+++ b/pkgs/misc/vim-plugins/overrides.nix
@@ -14,7 +14,7 @@
 , asmfmt, delve, errcheck, godef, golint
 , gomodifytags, gotags, gotools, motion
 , gnused, reftools, gogetdoc, gometalinter
-, impl, iferr
+, impl, iferr, gocode, gocode-gomod, go-tools
 }:
 
 let
@@ -261,6 +261,9 @@ with generated;
       asmfmt
       delve
       errcheck
+      go-tools
+      gocode
+      gocode-gomod
       godef
       gogetdoc
       golint

From 4d26a57d50d8324f6e824b930f3894a4cf65eab6 Mon Sep 17 00:00:00 2001
From: Cole Mickens <cole.mickens@gmail.com>
Date: Mon, 5 Nov 2018 13:12:25 -0800
Subject: [PATCH 0555/1129] falkon: enable qtwayland on linux

---
 .../networking/browsers/falkon/default.nix           | 12 ++++++++----
 1 file changed, 8 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/networking/browsers/falkon/default.nix b/pkgs/applications/networking/browsers/falkon/default.nix
index 21631ef191c4..ff16ddb90f69 100644
--- a/pkgs/applications/networking/browsers/falkon/default.nix
+++ b/pkgs/applications/networking/browsers/falkon/default.nix
@@ -1,5 +1,9 @@
-{ stdenv, fetchFromGitHub, cmake, extra-cmake-modules, pkgconfig, qmake
-, libpthreadstubs, libxcb, libXdmcp, qtsvg, qttools, qtwebengine, qtx11extras, kwallet }:
+{ stdenv, lib, fetchFromGitHub, cmake, extra-cmake-modules, pkgconfig, qmake
+, libpthreadstubs, libxcb, libXdmcp
+, qtsvg, qttools, qtwebengine, qtx11extras
+, qtwayland
+, kwallet
+}:
 
 stdenv.mkDerivation rec {
   name = "falkon-${version}";
@@ -21,9 +25,9 @@ stdenv.mkDerivation rec {
 
   buildInputs = [
     libpthreadstubs libxcb libXdmcp
+    qtsvg qttools qtwebengine qtx11extras
     kwallet
-    qtsvg qtwebengine qtx11extras
-  ];
+  ] ++ lib.optionals stdenv.isLinux [ qtwayland ];
 
   nativeBuildInputs = [ cmake extra-cmake-modules pkgconfig qmake qttools ];
 

From dfa5a2bbc31788212722b87b61d2fe607842dd38 Mon Sep 17 00:00:00 2001
From: ilikeavocadoes <36193715+ilikeavocadoes@users.noreply.github.com>
Date: Tue, 6 Nov 2018 08:36:52 +0200
Subject: [PATCH 0556/1129] nodePackages: add azure-functions-core-tools
 (#48453)

---
 .../node-packages/node-packages-v10.nix       |   99 +-
 .../node-packages/node-packages-v6.nix        |   99 +-
 .../node-packages/node-packages-v8.json       |    1 +
 .../node-packages/node-packages-v8.nix        | 4063 +++++++++--------
 4 files changed, 2238 insertions(+), 2024 deletions(-)

diff --git a/pkgs/development/node-packages/node-packages-v10.nix b/pkgs/development/node-packages/node-packages-v10.nix
index e94e8bfff1ed..b59c06aa87eb 100644
--- a/pkgs/development/node-packages/node-packages-v10.nix
+++ b/pkgs/development/node-packages/node-packages-v10.nix
@@ -283,15 +283,6 @@ let
         sha1 = "4bc0373c164bc3291b4d368c829cf1a80a59dca0";
       };
     };
-    "combined-stream-1.0.6" = {
-      name = "combined-stream";
-      packageName = "combined-stream";
-      version = "1.0.6";
-      src = fetchurl {
-        url = "http://registry.npmjs.org/combined-stream/-/combined-stream-1.0.6.tgz";
-        sha1 = "723e7df6e801ac5613113a7e445a9b69cb632818";
-      };
-    };
     "combined-stream-1.0.7" = {
       name = "combined-stream";
       packageName = "combined-stream";
@@ -522,7 +513,7 @@ let
       packageName = "fast-deep-equal";
       version = "1.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/fast-deep-equal/-/fast-deep-equal-1.1.0.tgz";
+        url = "http://registry.npmjs.org/fast-deep-equal/-/fast-deep-equal-1.1.0.tgz";
         sha1 = "c053477817c86b51daa853c81e059b733d023614";
       };
     };
@@ -598,13 +589,13 @@ let
         sha1 = "fbc71f0c41adeb37f96c577ad1ed42d8fdacca91";
       };
     };
-    "form-data-2.3.2" = {
+    "form-data-2.3.3" = {
       name = "form-data";
       packageName = "form-data";
-      version = "2.3.2";
+      version = "2.3.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/form-data/-/form-data-2.3.2.tgz";
-        sha1 = "4970498be604c20c005d4f5c23aecd21d6b49099";
+        url = "https://registry.npmjs.org/form-data/-/form-data-2.3.3.tgz";
+        sha512 = "1lLKB2Mu3aGP1Q/2eCOx0fNbRMe7XdwktwOruhfqqd0rIJWwN4Dh+E3hrPSlDCXnSR7UtZ1N38rVXm+6+MEhJQ==";
       };
     };
     "fragment-cache-0.2.1" = {
@@ -697,13 +688,13 @@ let
         sha1 = "dbf743c6c14992593c655568cb66ed32c0122ebe";
       };
     };
-    "graceful-fs-4.1.11" = {
+    "graceful-fs-4.1.15" = {
       name = "graceful-fs";
       packageName = "graceful-fs";
-      version = "4.1.11";
+      version = "4.1.15";
       src = fetchurl {
-        url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.1.11.tgz";
-        sha1 = "0e8bdfe4d1ddb8854d64e04ea7c00e2a026e5658";
+        url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.1.15.tgz";
+        sha512 = "6uHUhOPEBgQ24HM+r6b/QwWfZq+yiFcipKFrOFiBEnWdy5sdzYoi+pJeQaPI5qOLRFqWmAXUPQNsielzdLoecA==";
       };
     };
     "grunt-known-options-1.1.1" = {
@@ -1192,22 +1183,22 @@ let
         sha512 = "MWikgl9n9M3w+bpsY3He8L+w9eF9338xRl8IAO5viDizwSzziFEyUzo2xrrloB64ADbTf8uA8vRqqttDTOmccg==";
       };
     };
-    "mime-db-1.36.0" = {
+    "mime-db-1.37.0" = {
       name = "mime-db";
       packageName = "mime-db";
-      version = "1.36.0";
+      version = "1.37.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/mime-db/-/mime-db-1.36.0.tgz";
-        sha512 = "L+xvyD9MkoYMXb1jAmzI/lWYAxAMCPvIBSWur0PZ5nOf5euahRLVqH//FKW9mWp2lkqUgYiXPgkzfMUFi4zVDw==";
+        url = "https://registry.npmjs.org/mime-db/-/mime-db-1.37.0.tgz";
+        sha512 = "R3C4db6bgQhlIhPU48fUtdVmKnflq+hRdad7IyKhtFj06VPNVdk2RhiYL3UjQIlso8L+YxAtFkobT0VK+S/ybg==";
       };
     };
-    "mime-types-2.1.20" = {
+    "mime-types-2.1.21" = {
       name = "mime-types";
       packageName = "mime-types";
-      version = "2.1.20";
+      version = "2.1.21";
       src = fetchurl {
-        url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.20.tgz";
-        sha512 = "HrkrPaP9vGuWbLK1B1FfgAkbqNjIuy4eHlIYnFi7kamZyLLrGlo2mpcx0bBmNpKqBtYtAfGbodDddIgddSJC2A==";
+        url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.21.tgz";
+        sha512 = "3iL6DbwpyLzjR3xHSFNFeb9Nz/M8WDkX33t1GFQnFOllWk8pOrh/LSrB5OXlnlW5P9LH73X6loW/eogc+F5lJg==";
       };
     };
     "minimatch-3.0.4" = {
@@ -1237,13 +1228,13 @@ let
         sha1 = "a35008b20f41383eec1fb914f4cd5df79a264284";
       };
     };
-    "minipass-2.3.4" = {
+    "minipass-2.3.5" = {
       name = "minipass";
       packageName = "minipass";
-      version = "2.3.4";
+      version = "2.3.5";
       src = fetchurl {
-        url = "https://registry.npmjs.org/minipass/-/minipass-2.3.4.tgz";
-        sha512 = "mlouk1OHlaUE8Odt1drMtG1bAJA4ZA6B/ehysgV0LUIrDHdKgo1KorZq3pK0b/7Z7LJIQ12MNM6aC+Tn6lUZ5w==";
+        url = "https://registry.npmjs.org/minipass/-/minipass-2.3.5.tgz";
+        sha512 = "Gi1W4k059gyRbyVUZQ4mEqLm0YIUiGYfvxhF6SIlk3ui1WVxMTGfGdQ2SInh3PDrRTVvPKgULkpJtT4RH10+VA==";
       };
     };
     "minizlib-1.1.1" = {
@@ -1692,7 +1683,7 @@ let
       packageName = "safe-regex";
       version = "1.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/safe-regex/-/safe-regex-1.1.0.tgz";
+        url = "http://registry.npmjs.org/safe-regex/-/safe-regex-1.1.0.tgz";
         sha1 = "40a3669f3b077d1e943d44629e157dd48023bf2e";
       };
     };
@@ -1831,13 +1822,13 @@ let
         sha512 = "NzNVhJDYpwceVVii8/Hu6DKfD2G+NrQHlS/V/qgv763EYudVwEcMQNxd2lh+0VrUByXN/oJkl5grOhYWvQUYiw==";
       };
     };
-    "sshpk-1.15.1" = {
+    "sshpk-1.15.2" = {
       name = "sshpk";
       packageName = "sshpk";
-      version = "1.15.1";
+      version = "1.15.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/sshpk/-/sshpk-1.15.1.tgz";
-        sha512 = "mSdgNUaidk+dRU5MhYtN9zebdzF2iG0cNPWy8HG+W8y+fT1JnSkh0fzzpjOa0L7P8i1Rscz38t0h4gPcKz43xA==";
+        url = "https://registry.npmjs.org/sshpk/-/sshpk-1.15.2.tgz";
+        sha512 = "Ra/OXQtuh0/enyl4ETZAfTaeksa6BXks5ZcjpSUNrjBr0DvrJKX+1fsKDPpT9TBXgHAFsa4510aNVgI8g/+SzA==";
       };
     };
     "static-extend-0.1.2" = {
@@ -2020,13 +2011,13 @@ let
         sha512 = "yXJmeNaw3DnnKAOKJE51sL/ZaYfWJRl1pK9dr19YFCu0ObS231AB1/LbqTKRAQ5kw8A90rA6fr4riOUpTZvQZA==";
       };
     };
-    "v8flags-3.0.2" = {
+    "v8flags-3.1.1" = {
       name = "v8flags";
       packageName = "v8flags";
-      version = "3.0.2";
+      version = "3.1.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/v8flags/-/v8flags-3.0.2.tgz";
-        sha512 = "6sgSKoFw1UpUPd3cFdF7QGnrH6tDeBgW1F3v9gy8gLY0mlbiBXq8soy8aQpY6xeeCjH5K+JvC62Acp7gtl7wWA==";
+        url = "https://registry.npmjs.org/v8flags/-/v8flags-3.1.1.tgz";
+        sha512 = "iw/1ViSEaff8NJ3HLyEjawk/8hjJib3E7pvG4pddVXfUg1983s3VGsiClDjhK64MQVDGqc1Q8r18S4VKQZS9EQ==";
       };
     };
     "verror-1.10.0" = {
@@ -2114,10 +2105,10 @@ in
   grunt-cli = nodeEnv.buildNodePackage {
     name = "grunt-cli";
     packageName = "grunt-cli";
-    version = "1.3.1";
+    version = "1.3.2";
     src = fetchurl {
-      url = "https://registry.npmjs.org/grunt-cli/-/grunt-cli-1.3.1.tgz";
-      sha512 = "UwBRu/QpAjDc53DRLEkyilFdL0zenpxu+fddTIlsF/KJqdNcHaQmvyu1W3cDesZ9rqqZdKK5A8+QDIyLUEWoZQ==";
+      url = "https://registry.npmjs.org/grunt-cli/-/grunt-cli-1.3.2.tgz";
+      sha512 = "8OHDiZZkcptxVXtMfDxJvmN7MVJNE8L/yIcPb4HB7TlyFD1kDvjHrb62uhySsU14wJx9ORMnTuhRMQ40lH/orQ==";
     };
     dependencies = [
       sources."abbrev-1.1.1"
@@ -2369,7 +2360,7 @@ in
       })
       sources."urix-0.1.0"
       sources."use-3.1.1"
-      sources."v8flags-3.0.2"
+      sources."v8flags-3.1.1"
       sources."which-1.3.1"
     ];
     buildInputs = globalBuildInputs;
@@ -2420,17 +2411,13 @@ in
       sources."fast-deep-equal-1.1.0"
       sources."fast-json-stable-stringify-2.0.0"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."fs.realpath-1.0.0"
       sources."fstream-1.0.11"
       sources."gauge-2.7.4"
       sources."getpass-0.1.7"
       sources."glob-7.1.3"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-schema-2.0.0"
       sources."har-validator-5.1.0"
       sources."has-unicode-2.0.1"
@@ -2447,8 +2434,8 @@ in
       sources."json-schema-traverse-0.3.1"
       sources."json-stringify-safe-5.0.1"
       sources."jsprim-1.4.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
       sources."mkdirp-0.5.1"
@@ -2475,7 +2462,7 @@ in
       sources."semver-5.3.0"
       sources."set-blocking-2.0.0"
       sources."signal-exit-3.0.2"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."string-width-1.0.2"
       sources."string_decoder-1.1.1"
       sources."strip-ansi-3.0.1"
@@ -2554,7 +2541,7 @@ in
       sources."isarray-1.0.0"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
-      sources."minipass-2.3.4"
+      sources."minipass-2.3.5"
       sources."minizlib-1.1.1"
       sources."mkdirp-0.5.1"
       sources."ms-2.0.0"
@@ -2606,10 +2593,10 @@ in
   pnpm = nodeEnv.buildNodePackage {
     name = "pnpm";
     packageName = "pnpm";
-    version = "2.16.3";
+    version = "2.17.7";
     src = fetchurl {
-      url = "https://registry.npmjs.org/pnpm/-/pnpm-2.16.3.tgz";
-      sha512 = "W63qZOC9YGr+33JYvZjvhzvYL4YKT2gAywDJQrHvKTL6vmnnSh+GdM3ZdGIIZ6A57YB3NgvQaq/BJ2uYjwn3ZQ==";
+      url = "https://registry.npmjs.org/pnpm/-/pnpm-2.17.7.tgz";
+      sha512 = "FwZFpKSL4BNu1IGIScveHqZALpm6jSF7QR90CZXW4RfKaLpNYcIkkFC9iPBT4AdpPSv1UR/gYUWyQdTZBx2a5g==";
     };
     buildInputs = globalBuildInputs;
     meta = {
diff --git a/pkgs/development/node-packages/node-packages-v6.nix b/pkgs/development/node-packages/node-packages-v6.nix
index dc028435ad0a..5b9e7a8ef63f 100644
--- a/pkgs/development/node-packages/node-packages-v6.nix
+++ b/pkgs/development/node-packages/node-packages-v6.nix
@@ -283,15 +283,6 @@ let
         sha1 = "4bc0373c164bc3291b4d368c829cf1a80a59dca0";
       };
     };
-    "combined-stream-1.0.6" = {
-      name = "combined-stream";
-      packageName = "combined-stream";
-      version = "1.0.6";
-      src = fetchurl {
-        url = "http://registry.npmjs.org/combined-stream/-/combined-stream-1.0.6.tgz";
-        sha1 = "723e7df6e801ac5613113a7e445a9b69cb632818";
-      };
-    };
     "combined-stream-1.0.7" = {
       name = "combined-stream";
       packageName = "combined-stream";
@@ -522,7 +513,7 @@ let
       packageName = "fast-deep-equal";
       version = "1.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/fast-deep-equal/-/fast-deep-equal-1.1.0.tgz";
+        url = "http://registry.npmjs.org/fast-deep-equal/-/fast-deep-equal-1.1.0.tgz";
         sha1 = "c053477817c86b51daa853c81e059b733d023614";
       };
     };
@@ -598,13 +589,13 @@ let
         sha1 = "fbc71f0c41adeb37f96c577ad1ed42d8fdacca91";
       };
     };
-    "form-data-2.3.2" = {
+    "form-data-2.3.3" = {
       name = "form-data";
       packageName = "form-data";
-      version = "2.3.2";
+      version = "2.3.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/form-data/-/form-data-2.3.2.tgz";
-        sha1 = "4970498be604c20c005d4f5c23aecd21d6b49099";
+        url = "https://registry.npmjs.org/form-data/-/form-data-2.3.3.tgz";
+        sha512 = "1lLKB2Mu3aGP1Q/2eCOx0fNbRMe7XdwktwOruhfqqd0rIJWwN4Dh+E3hrPSlDCXnSR7UtZ1N38rVXm+6+MEhJQ==";
       };
     };
     "fragment-cache-0.2.1" = {
@@ -697,13 +688,13 @@ let
         sha1 = "dbf743c6c14992593c655568cb66ed32c0122ebe";
       };
     };
-    "graceful-fs-4.1.11" = {
+    "graceful-fs-4.1.15" = {
       name = "graceful-fs";
       packageName = "graceful-fs";
-      version = "4.1.11";
+      version = "4.1.15";
       src = fetchurl {
-        url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.1.11.tgz";
-        sha1 = "0e8bdfe4d1ddb8854d64e04ea7c00e2a026e5658";
+        url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.1.15.tgz";
+        sha512 = "6uHUhOPEBgQ24HM+r6b/QwWfZq+yiFcipKFrOFiBEnWdy5sdzYoi+pJeQaPI5qOLRFqWmAXUPQNsielzdLoecA==";
       };
     };
     "grunt-known-options-1.1.1" = {
@@ -1192,22 +1183,22 @@ let
         sha512 = "MWikgl9n9M3w+bpsY3He8L+w9eF9338xRl8IAO5viDizwSzziFEyUzo2xrrloB64ADbTf8uA8vRqqttDTOmccg==";
       };
     };
-    "mime-db-1.36.0" = {
+    "mime-db-1.37.0" = {
       name = "mime-db";
       packageName = "mime-db";
-      version = "1.36.0";
+      version = "1.37.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/mime-db/-/mime-db-1.36.0.tgz";
-        sha512 = "L+xvyD9MkoYMXb1jAmzI/lWYAxAMCPvIBSWur0PZ5nOf5euahRLVqH//FKW9mWp2lkqUgYiXPgkzfMUFi4zVDw==";
+        url = "https://registry.npmjs.org/mime-db/-/mime-db-1.37.0.tgz";
+        sha512 = "R3C4db6bgQhlIhPU48fUtdVmKnflq+hRdad7IyKhtFj06VPNVdk2RhiYL3UjQIlso8L+YxAtFkobT0VK+S/ybg==";
       };
     };
-    "mime-types-2.1.20" = {
+    "mime-types-2.1.21" = {
       name = "mime-types";
       packageName = "mime-types";
-      version = "2.1.20";
+      version = "2.1.21";
       src = fetchurl {
-        url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.20.tgz";
-        sha512 = "HrkrPaP9vGuWbLK1B1FfgAkbqNjIuy4eHlIYnFi7kamZyLLrGlo2mpcx0bBmNpKqBtYtAfGbodDddIgddSJC2A==";
+        url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.21.tgz";
+        sha512 = "3iL6DbwpyLzjR3xHSFNFeb9Nz/M8WDkX33t1GFQnFOllWk8pOrh/LSrB5OXlnlW5P9LH73X6loW/eogc+F5lJg==";
       };
     };
     "minimatch-3.0.4" = {
@@ -1237,13 +1228,13 @@ let
         sha1 = "a35008b20f41383eec1fb914f4cd5df79a264284";
       };
     };
-    "minipass-2.3.4" = {
+    "minipass-2.3.5" = {
       name = "minipass";
       packageName = "minipass";
-      version = "2.3.4";
+      version = "2.3.5";
       src = fetchurl {
-        url = "https://registry.npmjs.org/minipass/-/minipass-2.3.4.tgz";
-        sha512 = "mlouk1OHlaUE8Odt1drMtG1bAJA4ZA6B/ehysgV0LUIrDHdKgo1KorZq3pK0b/7Z7LJIQ12MNM6aC+Tn6lUZ5w==";
+        url = "https://registry.npmjs.org/minipass/-/minipass-2.3.5.tgz";
+        sha512 = "Gi1W4k059gyRbyVUZQ4mEqLm0YIUiGYfvxhF6SIlk3ui1WVxMTGfGdQ2SInh3PDrRTVvPKgULkpJtT4RH10+VA==";
       };
     };
     "minizlib-1.1.1" = {
@@ -1692,7 +1683,7 @@ let
       packageName = "safe-regex";
       version = "1.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/safe-regex/-/safe-regex-1.1.0.tgz";
+        url = "http://registry.npmjs.org/safe-regex/-/safe-regex-1.1.0.tgz";
         sha1 = "40a3669f3b077d1e943d44629e157dd48023bf2e";
       };
     };
@@ -1831,13 +1822,13 @@ let
         sha512 = "NzNVhJDYpwceVVii8/Hu6DKfD2G+NrQHlS/V/qgv763EYudVwEcMQNxd2lh+0VrUByXN/oJkl5grOhYWvQUYiw==";
       };
     };
-    "sshpk-1.15.1" = {
+    "sshpk-1.15.2" = {
       name = "sshpk";
       packageName = "sshpk";
-      version = "1.15.1";
+      version = "1.15.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/sshpk/-/sshpk-1.15.1.tgz";
-        sha512 = "mSdgNUaidk+dRU5MhYtN9zebdzF2iG0cNPWy8HG+W8y+fT1JnSkh0fzzpjOa0L7P8i1Rscz38t0h4gPcKz43xA==";
+        url = "https://registry.npmjs.org/sshpk/-/sshpk-1.15.2.tgz";
+        sha512 = "Ra/OXQtuh0/enyl4ETZAfTaeksa6BXks5ZcjpSUNrjBr0DvrJKX+1fsKDPpT9TBXgHAFsa4510aNVgI8g/+SzA==";
       };
     };
     "static-extend-0.1.2" = {
@@ -2020,13 +2011,13 @@ let
         sha512 = "yXJmeNaw3DnnKAOKJE51sL/ZaYfWJRl1pK9dr19YFCu0ObS231AB1/LbqTKRAQ5kw8A90rA6fr4riOUpTZvQZA==";
       };
     };
-    "v8flags-3.0.2" = {
+    "v8flags-3.1.1" = {
       name = "v8flags";
       packageName = "v8flags";
-      version = "3.0.2";
+      version = "3.1.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/v8flags/-/v8flags-3.0.2.tgz";
-        sha512 = "6sgSKoFw1UpUPd3cFdF7QGnrH6tDeBgW1F3v9gy8gLY0mlbiBXq8soy8aQpY6xeeCjH5K+JvC62Acp7gtl7wWA==";
+        url = "https://registry.npmjs.org/v8flags/-/v8flags-3.1.1.tgz";
+        sha512 = "iw/1ViSEaff8NJ3HLyEjawk/8hjJib3E7pvG4pddVXfUg1983s3VGsiClDjhK64MQVDGqc1Q8r18S4VKQZS9EQ==";
       };
     };
     "verror-1.10.0" = {
@@ -2114,10 +2105,10 @@ in
   grunt-cli = nodeEnv.buildNodePackage {
     name = "grunt-cli";
     packageName = "grunt-cli";
-    version = "1.3.1";
+    version = "1.3.2";
     src = fetchurl {
-      url = "https://registry.npmjs.org/grunt-cli/-/grunt-cli-1.3.1.tgz";
-      sha512 = "UwBRu/QpAjDc53DRLEkyilFdL0zenpxu+fddTIlsF/KJqdNcHaQmvyu1W3cDesZ9rqqZdKK5A8+QDIyLUEWoZQ==";
+      url = "https://registry.npmjs.org/grunt-cli/-/grunt-cli-1.3.2.tgz";
+      sha512 = "8OHDiZZkcptxVXtMfDxJvmN7MVJNE8L/yIcPb4HB7TlyFD1kDvjHrb62uhySsU14wJx9ORMnTuhRMQ40lH/orQ==";
     };
     dependencies = [
       sources."abbrev-1.1.1"
@@ -2369,7 +2360,7 @@ in
       })
       sources."urix-0.1.0"
       sources."use-3.1.1"
-      sources."v8flags-3.0.2"
+      sources."v8flags-3.1.1"
       sources."which-1.3.1"
     ];
     buildInputs = globalBuildInputs;
@@ -2420,17 +2411,13 @@ in
       sources."fast-deep-equal-1.1.0"
       sources."fast-json-stable-stringify-2.0.0"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."fs.realpath-1.0.0"
       sources."fstream-1.0.11"
       sources."gauge-2.7.4"
       sources."getpass-0.1.7"
       sources."glob-7.1.3"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-schema-2.0.0"
       sources."har-validator-5.1.0"
       sources."has-unicode-2.0.1"
@@ -2447,8 +2434,8 @@ in
       sources."json-schema-traverse-0.3.1"
       sources."json-stringify-safe-5.0.1"
       sources."jsprim-1.4.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
       sources."mkdirp-0.5.1"
@@ -2475,7 +2462,7 @@ in
       sources."semver-5.3.0"
       sources."set-blocking-2.0.0"
       sources."signal-exit-3.0.2"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."string-width-1.0.2"
       sources."string_decoder-1.1.1"
       sources."strip-ansi-3.0.1"
@@ -2554,7 +2541,7 @@ in
       sources."isarray-1.0.0"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
-      sources."minipass-2.3.4"
+      sources."minipass-2.3.5"
       sources."minizlib-1.1.1"
       sources."mkdirp-0.5.1"
       sources."ms-2.0.0"
@@ -2606,10 +2593,10 @@ in
   pnpm = nodeEnv.buildNodePackage {
     name = "pnpm";
     packageName = "pnpm";
-    version = "2.16.3";
+    version = "2.17.7";
     src = fetchurl {
-      url = "https://registry.npmjs.org/pnpm/-/pnpm-2.16.3.tgz";
-      sha512 = "W63qZOC9YGr+33JYvZjvhzvYL4YKT2gAywDJQrHvKTL6vmnnSh+GdM3ZdGIIZ6A57YB3NgvQaq/BJ2uYjwn3ZQ==";
+      url = "https://registry.npmjs.org/pnpm/-/pnpm-2.17.7.tgz";
+      sha512 = "FwZFpKSL4BNu1IGIScveHqZALpm6jSF7QR90CZXW4RfKaLpNYcIkkFC9iPBT4AdpPSv1UR/gYUWyQdTZBx2a5g==";
     };
     buildInputs = globalBuildInputs;
     meta = {
diff --git a/pkgs/development/node-packages/node-packages-v8.json b/pkgs/development/node-packages/node-packages-v8.json
index f297614ec38f..960859daa368 100644
--- a/pkgs/development/node-packages/node-packages-v8.json
+++ b/pkgs/development/node-packages/node-packages-v8.json
@@ -2,6 +2,7 @@
   "alloy"
 , "asar"
 , "azure-cli"
+, "azure-functions-core-tools"
 , "bower"
 , "bower2nix"
 , "browserify"
diff --git a/pkgs/development/node-packages/node-packages-v8.nix b/pkgs/development/node-packages/node-packages-v8.nix
index 4a6c248e2952..91627d3b5251 100644
--- a/pkgs/development/node-packages/node-packages-v8.nix
+++ b/pkgs/development/node-packages/node-packages-v8.nix
@@ -22,13 +22,13 @@ let
         sha512 = "tGAp3ULNyoA8b5o9LsU2Lq6SwgVPUOKAqKywu2liEtTvrFSGPrObwanhYwArq3GPeOqp2bi+JknSJCIU3oQN1Q==";
       };
     };
-    "@apollographql/graphql-playground-html-1.6.0" = {
+    "@apollographql/graphql-playground-html-1.6.4" = {
       name = "_at_apollographql_slash_graphql-playground-html";
       packageName = "@apollographql/graphql-playground-html";
-      version = "1.6.0";
+      version = "1.6.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@apollographql/graphql-playground-html/-/graphql-playground-html-1.6.0.tgz";
-        sha512 = "QAZIFrfVRkjvMkUHIQKZXZ3La0V5t12w5PWrhihYEabHwzIZV/txQd/kSYHgYPXC4s5OURxsXZop9f0BzI2QIQ==";
+        url = "https://registry.npmjs.org/@apollographql/graphql-playground-html/-/graphql-playground-html-1.6.4.tgz";
+        sha512 = "gwvaQO6/Hv4DEwhDLmmu2tzCU9oPjC5Xl9Kk8Yd0IxyKhYLlLalmkMMjsZLzU5H3fGaalLD96OYfxHL0ClVUDQ==";
       };
     };
     "@babel/code-frame-7.0.0" = {
@@ -76,15 +76,6 @@ let
         sha512 = "gqmspPZOMW3MIRb9HlrnbZHXI1/KHTOroBwN1NcLL6pWxzqzEKGvRTq0W/PxS45OtQGbaFikSQpkS5zbnsQm2w==";
       };
     };
-    "@babel/runtime-7.1.2" = {
-      name = "_at_babel_slash_runtime";
-      packageName = "@babel/runtime";
-      version = "7.1.2";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/@babel/runtime/-/runtime-7.1.2.tgz";
-        sha512 = "Y3SCjmhSupzFB6wcv1KmmFucH6gDVnI30WjOcicV10ju0cZjak3Jcs67YLIXBrmZYw1xCrVeJPbycFwrqNyxpg==";
-      };
-    };
     "@babel/runtime-corejs2-7.1.2" = {
       name = "_at_babel_slash_runtime-corejs2";
       packageName = "@babel/runtime-corejs2";
@@ -346,40 +337,40 @@ let
         sha1 = "890ae7c5d8c877f6d384860215ace9d7ec945bda";
       };
     };
-    "@ionic/cli-framework-1.1.1" = {
+    "@ionic/cli-framework-1.3.0" = {
       name = "_at_ionic_slash_cli-framework";
       packageName = "@ionic/cli-framework";
-      version = "1.1.1";
+      version = "1.3.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@ionic/cli-framework/-/cli-framework-1.1.1.tgz";
-        sha512 = "atY7TZO7Lh00iz9TIkEuzAg+h+onaf9tR5Xdq365grIDlOD6iRm1xAYKkLOzlObzNQ3WqDW5vqKmtiVrvg3Kfg==";
+        url = "https://registry.npmjs.org/@ionic/cli-framework/-/cli-framework-1.3.0.tgz";
+        sha512 = "hJVWOqZVJXD0pa1amVFPlX7emXdEM6YpbllXkMQwYSubt9TXPRgUboC3JYxvwEfTscnvWO5OnKGZ29f0/zpTQg==";
       };
     };
-    "@ionic/discover-1.0.6" = {
+    "@ionic/discover-1.0.7" = {
       name = "_at_ionic_slash_discover";
       packageName = "@ionic/discover";
-      version = "1.0.6";
+      version = "1.0.7";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@ionic/discover/-/discover-1.0.6.tgz";
-        sha512 = "7OsJ4Kr6G9PWVOFdlfXuM7Cz39qFff60dOOzPpIwDXInive+jk42pZ9aKPz/3NMrwWULUOY8pSZ4leiZJNPFpg==";
+        url = "https://registry.npmjs.org/@ionic/discover/-/discover-1.0.7.tgz";
+        sha512 = "HaG36P0dfxkBqkL9HJknd4bGXe+4QczhcCbpr0CzDBUzWbmoi0meyzRvqhVf9jd1WtnPYsfcJ6mAtaeu+NIRUw==";
       };
     };
-    "@ionic/utils-fs-0.0.3" = {
+    "@ionic/utils-fs-0.0.4" = {
       name = "_at_ionic_slash_utils-fs";
       packageName = "@ionic/utils-fs";
-      version = "0.0.3";
+      version = "0.0.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@ionic/utils-fs/-/utils-fs-0.0.3.tgz";
-        sha512 = "nj976Lms/0ocagWkfizM/zSWwfYRMOnT+wgNO3B9LMW8OjOH/llxTulBvTih0epqgLl9jjU7moW310BeECVC4g==";
+        url = "https://registry.npmjs.org/@ionic/utils-fs/-/utils-fs-0.0.4.tgz";
+        sha512 = "eipaSkrX3ODCQzGKxFgruq2J28RoEm+JC0jJv5S64OXATxsnbwuReTmA2EMJyevLJrORWM0yvsgqmiLHH5VYJg==";
       };
     };
-    "@ionic/utils-network-0.0.3" = {
+    "@ionic/utils-network-0.0.4" = {
       name = "_at_ionic_slash_utils-network";
       packageName = "@ionic/utils-network";
-      version = "0.0.3";
+      version = "0.0.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@ionic/utils-network/-/utils-network-0.0.3.tgz";
-        sha512 = "jc71iYRTg+st9K39rHtT2FWcgtVP9QIWTaDt4o+WFDD1lUicscosFncx5DEzHsb3Shn24SgbiqhcfQ2F//nfyw==";
+        url = "https://registry.npmjs.org/@ionic/utils-network/-/utils-network-0.0.4.tgz";
+        sha512 = "xJrO+ZG8Gud6qcLy/nFtoaloZHUM94Xvt4boAyyzr+1IFlgPfstfpbjsOFgKu5yqhc1+JyqwNtdJ14jEC9F17A==";
       };
     };
     "@kbrandwijk/swagger-to-graphql-2.4.3" = {
@@ -841,13 +832,13 @@ let
         sha512 = "bPHp6Ji8b41szTOcaP63VlnbbO5Ny6dwAATtY6JTjh5N2OLrb5Qk/Th5cRkRQhkWCt+EJsYrNB0MiL+Gpn6e3g==";
       };
     };
-    "@nodelib/fs.stat-1.1.2" = {
+    "@nodelib/fs.stat-1.1.3" = {
       name = "_at_nodelib_slash_fs.stat";
       packageName = "@nodelib/fs.stat";
-      version = "1.1.2";
+      version = "1.1.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@nodelib/fs.stat/-/fs.stat-1.1.2.tgz";
-        sha512 = "yprFYuno9FtNsSHVlSWd+nRlmGoAbqbeCwOryP6sC/zoCjhpArcRMYp19EvpSUSizJAlsXEwJv+wcWS9XaXdMw==";
+        url = "https://registry.npmjs.org/@nodelib/fs.stat/-/fs.stat-1.1.3.tgz";
+        sha512 = "shAmDyaQC4H92APFoIaVDHCx5bStIocgvbwQyxPRrbUY20V1EYTbSDchWbuwlMG3V17cprZhA6+78JfB+3DTPw==";
       };
     };
     "@protobufjs/aspromise-1.1.2" = {
@@ -958,13 +949,13 @@ let
         sha512 = "jOdnI/3qTpHABjM5cx1Hc0sKsPoYCp+DP/GJRGtDlPd7fiV9oXGGIcjW/ZOxLIvjGz8MA+uMZI9metHlgqbgwQ==";
       };
     };
-    "@types/async-2.0.49" = {
+    "@types/async-2.0.50" = {
       name = "_at_types_slash_async";
       packageName = "@types/async";
-      version = "2.0.49";
+      version = "2.0.50";
       src = fetchurl {
-        url = "http://registry.npmjs.org/@types/async/-/async-2.0.49.tgz";
-        sha512 = "Benr3i5odUkvpFkOpzGqrltGdbSs+EVCkEBGXbuR7uT0VzhXKIkhem6PDzHdx5EonA+rfbB3QvP6aDOw5+zp5Q==";
+        url = "https://registry.npmjs.org/@types/async/-/async-2.0.50.tgz";
+        sha512 = "VMhZMMQgV1zsR+lX/0IBfAk+8Eb7dPVMWiQGFAt3qjo5x7Ml6b77jUo0e1C3ToD+XRDXqtrfw+6AB0uUsPEr3Q==";
       };
     };
     "@types/babel-types-7.0.4" = {
@@ -1066,22 +1057,22 @@ let
         sha512 = "A2TAGbTFdBw9azHbpVd+/FkdW2T6msN1uct1O9bH3vTerEHKZhTXJUQXy+hNq1B0RagfU8U+KBdqiZpxjhOUQA==";
       };
     };
-    "@types/node-10.11.7" = {
+    "@types/node-10.12.2" = {
       name = "_at_types_slash_node";
       packageName = "@types/node";
-      version = "10.11.7";
+      version = "10.12.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@types/node/-/node-10.11.7.tgz";
-        sha512 = "yOxFfkN9xUFLyvWaeYj90mlqTJ41CsQzWKS3gXdOMOyPVacUsymejKxJ4/pMW7exouubuEeZLJawGgcNGYlTeg==";
+        url = "https://registry.npmjs.org/@types/node/-/node-10.12.2.tgz";
+        sha512 = "53ElVDSnZeFUUFIYzI8WLQ25IhWzb6vbddNp8UHlXQyU0ET2RhV5zg0NfubzU7iNMh5bBXb0htCzfvrSVNgzaQ==";
       };
     };
-    "@types/node-8.10.36" = {
+    "@types/node-8.10.37" = {
       name = "_at_types_slash_node";
       packageName = "@types/node";
-      version = "8.10.36";
+      version = "8.10.37";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@types/node/-/node-8.10.36.tgz";
-        sha512 = "SL6KhfM7PTqiFmbCW3eVNwVBZ+88Mrzbuvn9olPsfv43mbiWaFY+nRcz/TGGku0/lc2FepdMbImdMY1JrQ+zbw==";
+        url = "https://registry.npmjs.org/@types/node/-/node-8.10.37.tgz";
+        sha512 = "Jp39foY8Euv/PG4OGPyzxis82mnjcUtXLEMA8oFMCE4ilmuJgZPdV2nZNV1moz+99EJTtcpOSgDCgATUwABKig==";
       };
     };
     "@types/range-parser-1.2.2" = {
@@ -1138,211 +1129,220 @@ let
         sha512 = "te5lMAWii1uEJ4FwLjzdlbw3+n0FZNOvFXHxQDKeT0dilh7HOzdMzV2TrJVUzq8ep7J4Na8OUYPRLSQkJHAlrg==";
       };
     };
-    "@vue/cli-shared-utils-3.0.5" = {
+    "@vue/cli-shared-utils-3.1.1" = {
       name = "_at_vue_slash_cli-shared-utils";
       packageName = "@vue/cli-shared-utils";
-      version = "3.0.5";
+      version = "3.1.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@vue/cli-shared-utils/-/cli-shared-utils-3.0.5.tgz";
-        sha512 = "z5vPzUQGZJnRkojqVbDYar8NvGSvB0kUcO0O+Y+xkxVbjZxrq78e9bJFB4PR4QsqQbuBS9v3zawLWY4MhKwKOA==";
+        url = "https://registry.npmjs.org/@vue/cli-shared-utils/-/cli-shared-utils-3.1.1.tgz";
+        sha512 = "r+R+5LI6IHHPI5tbOSDy5DpiY5O9eTy8LPr/QCPb5RIOg+Pg03VlElW4BL69hePXEHCQZZDsOzgItSmat6mBhg==";
       };
     };
-    "@vue/cli-ui-3.0.5" = {
+    "@vue/cli-ui-3.1.1" = {
       name = "_at_vue_slash_cli-ui";
       packageName = "@vue/cli-ui";
-      version = "3.0.5";
+      version = "3.1.1";
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+        url = "https://registry.npmjs.org/@vue/cli-ui/-/cli-ui-3.1.1.tgz";
+        sha512 = "37L4nuV3dgsgI14Ry2EeSRlhLoY3WU1jQ0YcMpnk/uHpXA3hblWK7iixrQNkC0nftt2S8NTzOJFmCfRFisUgLQ==";
       };
     };
-    "@vue/cli-ui-addon-webpack-3.0.5" = {
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       name = "_at_vue_slash_cli-ui-addon-webpack";
       packageName = "@vue/cli-ui-addon-webpack";
-      version = "3.0.5";
+      version = "3.1.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@vue/cli-ui-addon-webpack/-/cli-ui-addon-webpack-3.0.5.tgz";
-        sha512 = "DhZ+wIaJnLzcVmkZMWxy0If9Rh68YWhsxeXuxIbcL4tpGBbIdd+44A5CqHWFkTkVma5zWlqckhVuTXUYdstEZw==";
+        url = "https://registry.npmjs.org/@vue/cli-ui-addon-webpack/-/cli-ui-addon-webpack-3.1.1.tgz";
+        sha512 = "ICIJKyML277EbOSPwjQGx1voKR4LTXOsM5oIqkjeH94ME6TEkVrzJwoFBMDnCRwUQ6cdDCn06D+FZY355jpVcg==";
       };
     };
-    "@webassemblyjs/ast-1.7.8" = {
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+      name = "_at_vue_slash_cli-ui-addon-widgets";
+      packageName = "@vue/cli-ui-addon-widgets";
+      version = "3.1.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@vue/cli-ui-addon-widgets/-/cli-ui-addon-widgets-3.1.1.tgz";
+        sha512 = "PJCAHYb0g1BBfmDk/DLpHJFOG5RpihbTa3DVAfW3U1adlrRLMKh21t/TelryFkjRTIDqglGDCMMa5ZT1JOW3tA==";
+      };
+    };
+    "@webassemblyjs/ast-1.7.11" = {
       name = "_at_webassemblyjs_slash_ast";
       packageName = "@webassemblyjs/ast";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/ast/-/ast-1.7.8.tgz";
-        sha512 = "dOrtdtEyB8sInpl75yLPNksY4sRl0j/+t6aHyB/YA+ab9hV3Fo7FmG12FHzP+2MvWVAJtDb+6eXR5EZbZJ+uVg==";
+        url = "https://registry.npmjs.org/@webassemblyjs/ast/-/ast-1.7.11.tgz";
+        sha512 = "ZEzy4vjvTzScC+SH8RBssQUawpaInUdMTYwYYLh54/s8TuT0gBLuyUnppKsVyZEi876VmmStKsUs28UxPgdvrA==";
       };
     };
-    "@webassemblyjs/floating-point-hex-parser-1.7.8" = {
+    "@webassemblyjs/floating-point-hex-parser-1.7.11" = {
       name = "_at_webassemblyjs_slash_floating-point-hex-parser";
       packageName = "@webassemblyjs/floating-point-hex-parser";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/floating-point-hex-parser/-/floating-point-hex-parser-1.7.8.tgz";
-        sha512 = "kn2zNKGsbql5i56VAgRYkpG+VazqHhQQZQycT2uXAazrAEDs23gy+Odkh5VblybjnwX2/BITkDtNmSO76hdIvQ==";
+        url = "https://registry.npmjs.org/@webassemblyjs/floating-point-hex-parser/-/floating-point-hex-parser-1.7.11.tgz";
+        sha512 = "zY8dSNyYcgzNRNT666/zOoAyImshm3ycKdoLsyDw/Bwo6+/uktb7p4xyApuef1dwEBo/U/SYQzbGBvV+nru2Xg==";
       };
     };
-    "@webassemblyjs/helper-api-error-1.7.8" = {
+    "@webassemblyjs/helper-api-error-1.7.11" = {
       name = "_at_webassemblyjs_slash_helper-api-error";
       packageName = "@webassemblyjs/helper-api-error";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/helper-api-error/-/helper-api-error-1.7.8.tgz";
-        sha512 = "xUwxDXsd1dUKArJEP5wWM5zxgCSwZApSOJyP1XO7M8rNUChUDblcLQ4FpzTpWG2YeylMwMl1MlP5Ztryiz1x4g==";
+        url = "https://registry.npmjs.org/@webassemblyjs/helper-api-error/-/helper-api-error-1.7.11.tgz";
+        sha512 = "7r1qXLmiglC+wPNkGuXCvkmalyEstKVwcueZRP2GNC2PAvxbLYwLLPr14rcdJaE4UtHxQKfFkuDFuv91ipqvXg==";
       };
     };
-    "@webassemblyjs/helper-buffer-1.7.8" = {
+    "@webassemblyjs/helper-buffer-1.7.11" = {
       name = "_at_webassemblyjs_slash_helper-buffer";
       packageName = "@webassemblyjs/helper-buffer";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/helper-buffer/-/helper-buffer-1.7.8.tgz";
-        sha512 = "WXiIMnuvuwlhWvVOm8xEXU9DnHaa3AgAU0ZPfvY8vO1cSsmYb2WbGbHnMLgs43vXnA7XAob9b56zuZaMkxpCBg==";
+        url = "https://registry.npmjs.org/@webassemblyjs/helper-buffer/-/helper-buffer-1.7.11.tgz";
+        sha512 = "MynuervdylPPh3ix+mKZloTcL06P8tenNH3sx6s0qE8SLR6DdwnfgA7Hc9NSYeob2jrW5Vql6GVlsQzKQCa13w==";
       };
     };
-    "@webassemblyjs/helper-code-frame-1.7.8" = {
+    "@webassemblyjs/helper-code-frame-1.7.11" = {
       name = "_at_webassemblyjs_slash_helper-code-frame";
       packageName = "@webassemblyjs/helper-code-frame";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/helper-code-frame/-/helper-code-frame-1.7.8.tgz";
-        sha512 = "TLQxyD9qGOIdX5LPQOPo0Ernd88U5rHkFb8WAjeMIeA0sPjCHeVPaGqUGGIXjUcblUkjuDAc07bruCcNHUrHDA==";
+        url = "https://registry.npmjs.org/@webassemblyjs/helper-code-frame/-/helper-code-frame-1.7.11.tgz";
+        sha512 = "T8ESC9KMXFTXA5urJcyor5cn6qWeZ4/zLPyWeEXZ03hj/x9weSokGNkVCdnhSabKGYWxElSdgJ+sFa9G/RdHNw==";
       };
     };
-    "@webassemblyjs/helper-flaten-ast-1.7.8" = {
+    "@webassemblyjs/helper-flaten-ast-1.7.11" = {
       name = "_at_webassemblyjs_slash_helper-flaten-ast";
       packageName = "@webassemblyjs/helper-flaten-ast";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/helper-flaten-ast/-/helper-flaten-ast-1.7.8.tgz";
-        sha512 = "Z6U67Havfc1LsCysc2Wb7FKjSxBXgaEp39wfzjPA86mcctxYv6T+6udzmgD872/s24TZoV4cC65eC78JT0kaeg==";
+        url = "https://registry.npmjs.org/@webassemblyjs/helper-flaten-ast/-/helper-flaten-ast-1.7.11.tgz";
+        sha512 = "qjjxf3HGZUkD7ja9X0xRKWfLHzwfWzEOle5Ww1NIh6unH6szA7oNeZkhIiWmXz5KaALn0g1b35DQcoaq1IQcSQ==";
       };
     };
-    "@webassemblyjs/helper-fsm-1.7.8" = {
+    "@webassemblyjs/helper-fsm-1.7.11" = {
       name = "_at_webassemblyjs_slash_helper-fsm";
       packageName = "@webassemblyjs/helper-fsm";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/helper-fsm/-/helper-fsm-1.7.8.tgz";
-        sha512 = "TjK0CnD8hAPkV5mbSp5aWl6SO1+H3WFcjWtixWoy8EMA99YnNzYhpc/WSYWhf7yrhpzkq5tZB0tvLK3Svr3IXA==";
+        url = "https://registry.npmjs.org/@webassemblyjs/helper-fsm/-/helper-fsm-1.7.11.tgz";
+        sha512 = "nsAQWNP1+8Z6tkzdYlXT0kxfa2Z1tRTARd8wYnc/e3Zv3VydVVnaeePgqUzFrpkGUyhUUxOl5ML7f1NuT+gC0A==";
       };
     };
-    "@webassemblyjs/helper-module-context-1.7.8" = {
+    "@webassemblyjs/helper-module-context-1.7.11" = {
       name = "_at_webassemblyjs_slash_helper-module-context";
       packageName = "@webassemblyjs/helper-module-context";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/helper-module-context/-/helper-module-context-1.7.8.tgz";
-        sha512 = "uCutAKR7Nm0VsFixcvnB4HhAyHouNbj0Dx1p7eRjFjXGGZ+N7ftTaG1ZbWCasAEbtwGj54LP8+lkBZdTCPmLGg==";
+        url = "https://registry.npmjs.org/@webassemblyjs/helper-module-context/-/helper-module-context-1.7.11.tgz";
+        sha512 = "JxfD5DX8Ygq4PvXDucq0M+sbUFA7BJAv/GGl9ITovqE+idGX+J3QSzJYz+LwQmL7fC3Rs+utvWoJxDb6pmC0qg==";
       };
     };
-    "@webassemblyjs/helper-wasm-bytecode-1.7.8" = {
+    "@webassemblyjs/helper-wasm-bytecode-1.7.11" = {
       name = "_at_webassemblyjs_slash_helper-wasm-bytecode";
       packageName = "@webassemblyjs/helper-wasm-bytecode";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/helper-wasm-bytecode/-/helper-wasm-bytecode-1.7.8.tgz";
-        sha512 = "AdCCE3BMW6V34WYaKUmPgVHa88t2Z14P4/0LjLwuGkI0X6pf7nzp0CehzVVk51cKm2ymVXjl9dCG+gR1yhITIQ==";
+        url = "https://registry.npmjs.org/@webassemblyjs/helper-wasm-bytecode/-/helper-wasm-bytecode-1.7.11.tgz";
+        sha512 = "cMXeVS9rhoXsI9LLL4tJxBgVD/KMOKXuFqYb5oCJ/opScWpkCMEz9EJtkonaNcnLv2R3K5jIeS4TRj/drde1JQ==";
       };
     };
-    "@webassemblyjs/helper-wasm-section-1.7.8" = {
+    "@webassemblyjs/helper-wasm-section-1.7.11" = {
       name = "_at_webassemblyjs_slash_helper-wasm-section";
       packageName = "@webassemblyjs/helper-wasm-section";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/helper-wasm-section/-/helper-wasm-section-1.7.8.tgz";
-        sha512 = "BkBhYQuzyl4hgTGOKo87Vdw6f9nj8HhI7WYpI0MCC5qFa5ahrAPOGgyETVdnRbv+Rjukl9MxxfDmVcVC435lDg==";
+        url = "https://registry.npmjs.org/@webassemblyjs/helper-wasm-section/-/helper-wasm-section-1.7.11.tgz";
+        sha512 = "8ZRY5iZbZdtNFE5UFunB8mmBEAbSI3guwbrsCl4fWdfRiAcvqQpeqd5KHhSWLL5wuxo53zcaGZDBU64qgn4I4Q==";
       };
     };
-    "@webassemblyjs/ieee754-1.7.8" = {
+    "@webassemblyjs/ieee754-1.7.11" = {
       name = "_at_webassemblyjs_slash_ieee754";
       packageName = "@webassemblyjs/ieee754";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/ieee754/-/ieee754-1.7.8.tgz";
-        sha512 = "tOarWChdG1a3y1yqCX0JMDKzrat5tQe4pV6K/TX19BcXsBLYxFQOL1DEDa5KG9syeyvCrvZ+i1+Mv1ExngvktQ==";
+        url = "https://registry.npmjs.org/@webassemblyjs/ieee754/-/ieee754-1.7.11.tgz";
+        sha512 = "Mmqx/cS68K1tSrvRLtaV/Lp3NZWzXtOHUW2IvDvl2sihAwJh4ACE0eL6A8FvMyDG9abes3saB6dMimLOs+HMoQ==";
       };
     };
-    "@webassemblyjs/leb128-1.7.8" = {
+    "@webassemblyjs/leb128-1.7.11" = {
       name = "_at_webassemblyjs_slash_leb128";
       packageName = "@webassemblyjs/leb128";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/leb128/-/leb128-1.7.8.tgz";
-        sha512 = "GCYeGPgUFWJiZuP4NICbcyUQNxNLJIf476Ei+K+jVuuebtLpfvwkvYT6iTUE7oZYehhkor4Zz2g7SJ/iZaPudQ==";
+        url = "https://registry.npmjs.org/@webassemblyjs/leb128/-/leb128-1.7.11.tgz";
+        sha512 = "vuGmgZjjp3zjcerQg+JA+tGOncOnJLWVkt8Aze5eWQLwTQGNgVLcyOTqgSCxWTR4J42ijHbBxnuRaL1Rv7XMdw==";
       };
     };
-    "@webassemblyjs/utf8-1.7.8" = {
+    "@webassemblyjs/utf8-1.7.11" = {
       name = "_at_webassemblyjs_slash_utf8";
       packageName = "@webassemblyjs/utf8";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/utf8/-/utf8-1.7.8.tgz";
-        sha512 = "9X+f0VV+xNXW2ujfIRSXBJENGE6Qh7bNVKqu3yDjTFB3ar3nsThsGBBKdTG58aXOm2iUH6v28VIf88ymPXODHA==";
+        url = "https://registry.npmjs.org/@webassemblyjs/utf8/-/utf8-1.7.11.tgz";
+        sha512 = "C6GFkc7aErQIAH+BMrIdVSmW+6HSe20wg57HEC1uqJP8E/xpMjXqQUxkQw07MhNDSDcGpxI9G5JSNOQCqJk4sA==";
       };
     };
-    "@webassemblyjs/validation-1.7.8" = {
+    "@webassemblyjs/validation-1.7.11" = {
       name = "_at_webassemblyjs_slash_validation";
       packageName = "@webassemblyjs/validation";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/validation/-/validation-1.7.8.tgz";
-        sha512 = "UmEQX0TMA+uCbaQYA+Z8YwwIr+Y5W5UMaROEh4V+7Ef6HpkFZBn8sHRo5xNQORy2rxkkOSR25tjUK62n6iQlDA==";
+        url = "https://registry.npmjs.org/@webassemblyjs/validation/-/validation-1.7.11.tgz";
+        sha512 = "F+SNGDictbnqdcoaIUlhWvM11mupf8OLKaBKKFrUDENaVQI/LsdfMuXg3lglLfV5Rkp9isqda2SUMiJZXyYzHQ==";
       };
     };
-    "@webassemblyjs/wasm-edit-1.7.8" = {
+    "@webassemblyjs/wasm-edit-1.7.11" = {
       name = "_at_webassemblyjs_slash_wasm-edit";
       packageName = "@webassemblyjs/wasm-edit";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/wasm-edit/-/wasm-edit-1.7.8.tgz";
-        sha512 = "6D3Hm2gFixrfyx9XjSON4ml1FZTugqpkIz5Awvrou8fnpyprVzcm4X8pyGRtA2Piixjl3DqmX/HB1xdWyE097A==";
+        url = "https://registry.npmjs.org/@webassemblyjs/wasm-edit/-/wasm-edit-1.7.11.tgz";
+        sha512 = "FUd97guNGsCZQgeTPKdgxJhBXkUbMTY6hFPf2Y4OedXd48H97J+sOY2Ltaq6WGVpIH8o/TGOVNiVz/SbpEMJGg==";
       };
     };
-    "@webassemblyjs/wasm-gen-1.7.8" = {
+    "@webassemblyjs/wasm-gen-1.7.11" = {
       name = "_at_webassemblyjs_slash_wasm-gen";
       packageName = "@webassemblyjs/wasm-gen";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/wasm-gen/-/wasm-gen-1.7.8.tgz";
-        sha512 = "a7O/wE6eBeVKKUYgpMK7NOHmMADD85rSXLe3CqrWRDwWff5y3cSVbzpN6Qv3z6C4hdkpq9qyij1Ga1kemOZGvQ==";
+        url = "https://registry.npmjs.org/@webassemblyjs/wasm-gen/-/wasm-gen-1.7.11.tgz";
+        sha512 = "U/KDYp7fgAZX5KPfq4NOupK/BmhDc5Kjy2GIqstMhvvdJRcER/kUsMThpWeRP8BMn4LXaKhSTggIJPOeYHwISA==";
       };
     };
-    "@webassemblyjs/wasm-opt-1.7.8" = {
+    "@webassemblyjs/wasm-opt-1.7.11" = {
       name = "_at_webassemblyjs_slash_wasm-opt";
       packageName = "@webassemblyjs/wasm-opt";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/wasm-opt/-/wasm-opt-1.7.8.tgz";
-        sha512 = "3lbQ0PT81NHCdi1sR/7+SNpZadM4qYcTSr62nFFAA7e5lFwJr14M1Gi+A/Y3PgcDWOHYjsaNGPpPU0H03N6Blg==";
+        url = "https://registry.npmjs.org/@webassemblyjs/wasm-opt/-/wasm-opt-1.7.11.tgz";
+        sha512 = "XynkOwQyiRidh0GLua7SkeHvAPXQV/RxsUeERILmAInZegApOUAIJfRuPYe2F7RcjOC9tW3Cb9juPvAC/sCqvg==";
       };
     };
-    "@webassemblyjs/wasm-parser-1.7.8" = {
+    "@webassemblyjs/wasm-parser-1.7.11" = {
       name = "_at_webassemblyjs_slash_wasm-parser";
       packageName = "@webassemblyjs/wasm-parser";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/wasm-parser/-/wasm-parser-1.7.8.tgz";
-        sha512 = "rZ/zlhp9DHR/05zh1MbAjT2t624sjrPP/OkJCjXqzm7ynH+nIdNcn9Ixc+qzPMFXhIrk0rBoQ3to6sEIvHh9jQ==";
+        url = "https://registry.npmjs.org/@webassemblyjs/wasm-parser/-/wasm-parser-1.7.11.tgz";
+        sha512 = "6lmXRTrrZjYD8Ng8xRyvyXQJYUQKYSXhJqXOBLw24rdiXsHAOlvw5PhesjdcaMadU/pyPQOJ5dHreMjBxwnQKg==";
       };
     };
-    "@webassemblyjs/wast-parser-1.7.8" = {
+    "@webassemblyjs/wast-parser-1.7.11" = {
       name = "_at_webassemblyjs_slash_wast-parser";
       packageName = "@webassemblyjs/wast-parser";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/wast-parser/-/wast-parser-1.7.8.tgz";
-        sha512 = "Q/zrvtUvzWuSiJMcSp90fi6gp2nraiHXjTV2VgAluVdVapM4gy1MQn7akja2p6eSBDQpKJPJ6P4TxRkghRS5dg==";
+        url = "https://registry.npmjs.org/@webassemblyjs/wast-parser/-/wast-parser-1.7.11.tgz";
+        sha512 = "lEyVCg2np15tS+dm7+JJTNhNWq9yTZvi3qEhAIIOaofcYlUp0UR5/tVqOwa/gXYr3gjwSZqw+/lS9dscyLelbQ==";
       };
     };
-    "@webassemblyjs/wast-printer-1.7.8" = {
+    "@webassemblyjs/wast-printer-1.7.11" = {
       name = "_at_webassemblyjs_slash_wast-printer";
       packageName = "@webassemblyjs/wast-printer";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@webassemblyjs/wast-printer/-/wast-printer-1.7.8.tgz";
-        sha512 = "GllIthRtwTxRDAURRNXscu7Napzmdf1jt1gpiZiK/QN4fH0lSGs3OTmvdfsMNP7tqI4B3ZtfaaWRlNIQug6Xyg==";
+        url = "https://registry.npmjs.org/@webassemblyjs/wast-printer/-/wast-printer-1.7.11.tgz";
+        sha512 = "m5vkAsuJ32QpkdkDOUPGSltrg8Cuk3KBx4YrmAGQwCZPRdUHXxG4phIOuuycLemHFr74sWL9Wthqss4fzdzSwg==";
       };
     };
     "@xtuc/ieee754-1.2.0" = {
@@ -1494,7 +1494,7 @@ let
       packageName = "abstract-leveldown";
       version = "0.12.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/abstract-leveldown/-/abstract-leveldown-0.12.4.tgz";
+        url = "http://registry.npmjs.org/abstract-leveldown/-/abstract-leveldown-0.12.4.tgz";
         sha1 = "29e18e632e60e4e221d5810247852a63d7b2e410";
       };
     };
@@ -1503,10 +1503,19 @@ let
       packageName = "abstract-leveldown";
       version = "4.0.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/abstract-leveldown/-/abstract-leveldown-4.0.3.tgz";
+        url = "http://registry.npmjs.org/abstract-leveldown/-/abstract-leveldown-4.0.3.tgz";
         sha512 = "qsIHFQy0u17JqSY+3ZUT+ykqxYY17yOfvAsLkFkw8kSQqi05d1jyj0bCuSX6sjYlXuY9cKpgUt5EudQdP4aXyA==";
       };
     };
+    "abstract-leveldown-5.0.0" = {
+      name = "abstract-leveldown";
+      packageName = "abstract-leveldown";
+      version = "5.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/abstract-leveldown/-/abstract-leveldown-5.0.0.tgz";
+        sha512 = "5mU5P1gXtsMIXg65/rsYGsi93+MlogXZ9FA8JnwKurHQg64bfXwGYVdVdijNTVNOlAsuIiOwHdvFFD5JqCJQ7A==";
+      };
+    };
     "abstract-random-access-1.1.2" = {
       name = "abstract-random-access";
       packageName = "abstract-random-access";
@@ -1597,13 +1606,13 @@ let
         sha512 = "T/zvzYRfbVojPWahDsE5evJdHb3oJoQfFbsrKM7w5Zcs++Tr257tia3BmMP8XYVjp1S9RZXQMh7gao96BlqZOw==";
       };
     };
-    "acorn-6.0.2" = {
+    "acorn-6.0.3" = {
       name = "acorn";
       packageName = "acorn";
-      version = "6.0.2";
+      version = "6.0.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/acorn/-/acorn-6.0.2.tgz";
-        sha512 = "GXmKIvbrN3TV7aVqAzVFaMW8F8wzVX7voEBRO3bDA64+EX37YSayggRJP5Xig6HYHBkWKpFg9W5gg6orklubhg==";
+        url = "https://registry.npmjs.org/acorn/-/acorn-6.0.3.tgz";
+        sha512 = "xEnlTS2J0PKuub0pd2Y4W58iEo1sfRZ3h23E8AKmlnV8Nc6E/syRdVeo0DMuLSrgRJZHnFeDou2llXfB+wb1/A==";
       };
     };
     "acorn-dynamic-import-3.0.0" = {
@@ -1615,6 +1624,15 @@ let
         sha512 = "zVWV8Z8lislJoOKKqdNMOB+s6+XV5WERty8MnKBeFgwA+19XJjJHs2RP5dzM57FftIs+jQnRToLiWazKr6sSWg==";
       };
     };
+    "acorn-dynamic-import-4.0.0" = {
+      name = "acorn-dynamic-import";
+      packageName = "acorn-dynamic-import";
+      version = "4.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/acorn-dynamic-import/-/acorn-dynamic-import-4.0.0.tgz";
+        sha512 = "d3OEjQV4ROpoflsnUA8HozoIR504TFxNivYEUi6uwz0IYhBkTDXGuWlNdMtybRt3nqVx/L6XqMt0FxkXuWKZhw==";
+      };
+    };
     "acorn-globals-1.0.9" = {
       name = "acorn-globals";
       packageName = "acorn-globals";
@@ -1651,13 +1669,22 @@ let
         sha512 = "JY+iV6r+cO21KtntVvFkD+iqjtdpRUpGqKWgfkCdZq1R+kbreEl8EcdcJR4SmiIgsIQT33s6QzheQ9a275Q8xw==";
       };
     };
-    "acorn-node-1.6.0" = {
+    "acorn-jsx-5.0.0" = {
+      name = "acorn-jsx";
+      packageName = "acorn-jsx";
+      version = "5.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/acorn-jsx/-/acorn-jsx-5.0.0.tgz";
+        sha512 = "XkB50fn0MURDyww9+UYL3c1yLbOBz0ZFvrdYlGB8l+Ije1oSC75qAqrzSPjYQbdnQUzhlUGNKuesryAv0gxZOg==";
+      };
+    };
+    "acorn-node-1.6.2" = {
       name = "acorn-node";
       packageName = "acorn-node";
-      version = "1.6.0";
+      version = "1.6.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/acorn-node/-/acorn-node-1.6.0.tgz";
-        sha512 = "ZsysjEh+Y3i14f7YXCAKJy99RXbd56wHKYBzN4FlFtICIZyFpYwK6OwNJhcz8A/FMtxoUZkJofH1v9KIfNgWmw==";
+        url = "https://registry.npmjs.org/acorn-node/-/acorn-node-1.6.2.tgz";
+        sha512 = "rIhNEZuNI8ibQcL7ANm/mGyPukIaZsRNX9psFNQURyJW0nu6k8wjSDld20z6v2mDBWqX13pIEnk9gGZJHIlEXg==";
       };
     };
     "acorn-walk-6.1.0" = {
@@ -1804,13 +1831,13 @@ let
         sha512 = "JVwXMr9nHYTUXsBFKUqhJwvlcYU/blreOEUkhNR2eXZIvwd+c+o5V4MgDPKWnMS/56awN3TRzIP+KoPn+roQtg==";
       };
     };
-    "agentkeepalive-3.5.1" = {
+    "agentkeepalive-3.5.2" = {
       name = "agentkeepalive";
       packageName = "agentkeepalive";
-      version = "3.5.1";
+      version = "3.5.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/agentkeepalive/-/agentkeepalive-3.5.1.tgz";
-        sha512 = "Cte/sTY9/XcygXjJ0q58v//SnEQ7ViWExKyJpLJlLqomDbQyMLh6Is4KuWJ/wmxzhiwkGRple7Gqv1zf6Syz5w==";
+        url = "https://registry.npmjs.org/agentkeepalive/-/agentkeepalive-3.5.2.tgz";
+        sha512 = "e0L/HNe6qkQ7H19kTlRRqUibEAwDK5AFk6y3PtMsuut2VAH6+Q4xZml1tNDJD7kSAyqmbG/K08K5WEJYtUrSlQ==";
       };
     };
     "aggregate-error-1.0.0" = {
@@ -1903,6 +1930,15 @@ let
         sha512 = "4Wyjt8+t6YszqaXnLDfMmG/8AlO5Zbcsy3ATHncCzjW/NoPzAId8AK6749Ybjmdt+kUY1gP60fCu46oDxPv/mg==";
       };
     };
+    "ajv-6.5.5" = {
+      name = "ajv";
+      packageName = "ajv";
+      version = "6.5.5";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/ajv/-/ajv-6.5.5.tgz";
+        sha512 = "7q7gtRQDJSyuEHjuVgHoUa2VuemFiCMrfQc9Tc08XTAc4Zj/5U1buQJ0HU6i7fKjXU09SVgSmxa4sLvuvS8Iyg==";
+      };
+    };
     "ajv-keywords-1.5.1" = {
       name = "ajv-keywords";
       packageName = "ajv-keywords";
@@ -1935,7 +1971,7 @@ let
       packageName = "aliasify";
       version = "2.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/aliasify/-/aliasify-2.1.0.tgz";
+        url = "http://registry.npmjs.org/aliasify/-/aliasify-2.1.0.tgz";
         sha1 = "7c30825b9450b9e6185ba27533eaf6e2067d4b42";
       };
     };
@@ -2245,13 +2281,13 @@ let
         sha1 = "ee49736b639b4f108b6e9e626c6da99306b41692";
       };
     };
-    "apollo-cache-1.1.17" = {
+    "apollo-cache-1.1.20" = {
       name = "apollo-cache";
       packageName = "apollo-cache";
-      version = "1.1.17";
+      version = "1.1.20";
       src = fetchurl {
-        url = "https://registry.npmjs.org/apollo-cache/-/apollo-cache-1.1.17.tgz";
-        sha512 = "7sp24n2HZO4vXgTaKNomLyIfGxG4gDdDkBB0jkRzRi7HhnKmfwhiF/RCiKNbgLdrPX151INdls0KwIVliD0dHQ==";
+        url = "https://registry.npmjs.org/apollo-cache/-/apollo-cache-1.1.20.tgz";
+        sha512 = "+Du0/4kUSuf5PjPx0+pvgMGV12ezbHA8/hubYuqRQoy/4AWb4faa61CgJNI6cKz2mhDd9m94VTNKTX11NntwkQ==";
       };
     };
     "apollo-cache-control-0.2.5" = {
@@ -2263,22 +2299,22 @@ let
         sha512 = "xEDrUvo3U2mQKSzA8NzQmgeqK4ytwFnTGl2YKGKPfG0+r8fZdswKp6CDBue29KLO8KkSuqW/hntveWrAdK51FQ==";
       };
     };
-    "apollo-cache-inmemory-1.3.5" = {
+    "apollo-cache-inmemory-1.3.9" = {
       name = "apollo-cache-inmemory";
       packageName = "apollo-cache-inmemory";
-      version = "1.3.5";
+      version = "1.3.9";
       src = fetchurl {
-        url = "https://registry.npmjs.org/apollo-cache-inmemory/-/apollo-cache-inmemory-1.3.5.tgz";
-        sha512 = "CD4Dl9vcCp7N05KUqR3rNDj2WJ1DQNNfeyBUIo5T6XTiUhfBQp5x+CL7S+ezy5mPp+xo4TnwFzLFh/vy2LdDog==";
+        url = "https://registry.npmjs.org/apollo-cache-inmemory/-/apollo-cache-inmemory-1.3.9.tgz";
+        sha512 = "Q2k84p/OqIuMUyeWGc6XbVXXZu0erYOO+wTx9p+CnQUspnNvf7zmvFNgFnmudXzfuG1m1CSzePk6fC/M1ehOqQ==";
       };
     };
-    "apollo-client-2.4.2" = {
+    "apollo-client-2.4.5" = {
       name = "apollo-client";
       packageName = "apollo-client";
-      version = "2.4.2";
+      version = "2.4.5";
       src = fetchurl {
-        url = "https://registry.npmjs.org/apollo-client/-/apollo-client-2.4.2.tgz";
-        sha512 = "g1z23umaVSoKLj9xNl0aAnk2KBF4JeBi7MeKFc9CGTixH7TkqeQUQtxcjrC7j2h4KmDbuhOAHOFUGf8YshN+ag==";
+        url = "https://registry.npmjs.org/apollo-client/-/apollo-client-2.4.5.tgz";
+        sha512 = "nUm06EGa4TP/IY68OzmC3lTD32TqkjLOQdb69uYo+lHl8NnwebtrAw3qFtsQtTEz6ueBp/Z/HasNZng4jwafVQ==";
       };
     };
     "apollo-codegen-0.19.1" = {
@@ -2434,22 +2470,22 @@ let
         sha512 = "DZO7pfL5LATHeJdVFoTZ/N3HwA+IMf1YnIt5K+uMQW+/MrRgYOtTszUv5tYX2cUIqHYHcbdDaBQUuIXwSpaV2Q==";
       };
     };
-    "apollo-upload-client-8.1.0" = {
+    "apollo-upload-client-9.1.0" = {
       name = "apollo-upload-client";
       packageName = "apollo-upload-client";
-      version = "8.1.0";
+      version = "9.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/apollo-upload-client/-/apollo-upload-client-8.1.0.tgz";
-        sha512 = "JEgStzhnwybj1ifE2nViLEl7NTM5+zS++fKbDL95PIpodg2AdYeeN7eEa7RXpYD14iC3FVcsfqgGMREv2+cSxw==";
+        url = "https://registry.npmjs.org/apollo-upload-client/-/apollo-upload-client-9.1.0.tgz";
+        sha512 = "ZN5gsbBjImEZTWWTUHpCEGDasnoBGbaODpznQ5EawyNHceuFYSNJbbft+ZZ841vZAcj9XZdKUKoaLBlMZ/r7nw==";
       };
     };
-    "apollo-utilities-1.0.21" = {
+    "apollo-utilities-1.0.25" = {
       name = "apollo-utilities";
       packageName = "apollo-utilities";
-      version = "1.0.21";
+      version = "1.0.25";
       src = fetchurl {
-        url = "https://registry.npmjs.org/apollo-utilities/-/apollo-utilities-1.0.21.tgz";
-        sha512 = "ZcxELlEl+sDCYBgEMdNXJAsZtRVm8wk4HIA58bMsqYfd1DSAJQEtZ93F0GZgYNAGy3QyaoBeZtbb0/01++G8JQ==";
+        url = "https://registry.npmjs.org/apollo-utilities/-/apollo-utilities-1.0.25.tgz";
+        sha512 = "AXvqkhni3Ir1ffm4SA1QzXn8k8I5BBl4PVKEyak734i4jFdp+xgfUyi2VCqF64TJlFTA/B73TRDUvO2D+tKtZg==";
       };
     };
     "append-0.1.1" = {
@@ -2479,15 +2515,6 @@ let
         sha1 = "d8220cf466081525efea50614f3de6514dfa58f1";
       };
     };
-    "append-field-0.1.0" = {
-      name = "append-field";
-      packageName = "append-field";
-      version = "0.1.0";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/append-field/-/append-field-0.1.0.tgz";
-        sha1 = "6ddc58fa083c7bc545d3c5995b2830cc2366d44a";
-      };
-    };
     "append-field-1.0.0" = {
       name = "append-field";
       packageName = "append-field";
@@ -3271,15 +3298,6 @@ let
         sha1 = "d16901d10ccec59516c197b9ccd8930689b813b4";
       };
     };
-    "atomic-file-0.0.1" = {
-      name = "atomic-file";
-      packageName = "atomic-file";
-      version = "0.0.1";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/atomic-file/-/atomic-file-0.0.1.tgz";
-        sha1 = "6c36658f6c4ece33fba3877731e7c25fc82999bb";
-      };
-    };
     "atomic-file-1.1.5" = {
       name = "atomic-file";
       packageName = "atomic-file";
@@ -3316,13 +3334,13 @@ let
         sha1 = "00f35b2d27ac91b1f0d3ef2084c98cf1d1f0adc3";
       };
     };
-    "aws-sdk-2.334.0" = {
+    "aws-sdk-2.348.0" = {
       name = "aws-sdk";
       packageName = "aws-sdk";
-      version = "2.334.0";
+      version = "2.348.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.334.0.tgz";
-        sha512 = "JiqtB2t/PklHCfo86HA6g6a8CXu5SDNa8XiaQ0rYyVBlzDR41p/s/yNlva3D1/QGiBTojl2fd9ZxBUxKa2Q9cg==";
+        url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.348.0.tgz";
+        sha512 = "TfguapuOAwk7EG8zhYJPjkCaF4tyGjfgcXLkYbWbuS4O6E8pn0x2K5Yt1KXwLiWxG0fzKCLiiaNA5H7bKAP4YQ==";
       };
     };
     "aws-sign-0.2.1" = {
@@ -3438,7 +3456,7 @@ let
       packageName = "azure-arm-devtestlabs";
       version = "2.1.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/azure-arm-devtestlabs/-/azure-arm-devtestlabs-2.1.1.tgz";
+        url = "http://registry.npmjs.org/azure-arm-devtestlabs/-/azure-arm-devtestlabs-2.1.1.tgz";
         sha512 = "S5dCYTMrqL+BJc699fIQtXwLFuv5m8jTDqPdXTFpn/CSkyBcOyJwuZH2zPExQjGNZTyjIR6GWi8oeg/IpYLBWw==";
       };
     };
@@ -3523,13 +3541,13 @@ let
         sha1 = "aa9a49fb9081a210f2f4cc6596ca4653b68306e6";
       };
     };
-    "azure-arm-resource-7.0.0" = {
+    "azure-arm-resource-7.0.1" = {
       name = "azure-arm-resource";
       packageName = "azure-arm-resource";
-      version = "7.0.0";
+      version = "7.0.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/azure-arm-resource/-/azure-arm-resource-7.0.0.tgz";
-        sha512 = "LW1OmW49d5xQo/KDBK2BNfoFVOlP8Gq9yKqP2kz0e6RURl5UXhIfN65Y4GeJramuyGIOXeGPV+NrXrzl1k4d4g==";
+        url = "https://registry.npmjs.org/azure-arm-resource/-/azure-arm-resource-7.0.1.tgz";
+        sha512 = "vimPiR/xf6TFWNooIXZM6gRQV7Gdqs0y2wzNF+SNSMxPj3h8XEuSL/SyRZHNULY7sJseAx+0aGjWXbZxQo+kVw==";
       };
     };
     "azure-arm-servermanagement-1.1.0" = {
@@ -3559,13 +3577,13 @@ let
         sha1 = "b46cfcf7f1690e4739864dcdb5c8de322e82ec50";
       };
     };
-    "azure-arm-website-5.3.0" = {
+    "azure-arm-website-5.5.0" = {
       name = "azure-arm-website";
       packageName = "azure-arm-website";
-      version = "5.3.0";
+      version = "5.5.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/azure-arm-website/-/azure-arm-website-5.3.0.tgz";
-        sha512 = "R2x44/SIGCuTBkRvnZuEjagIMAqcec38HnCl1AEO9NwpEh0HiD9eIa1XEM7j6wa7vHqyQdL7hNwYnCS0QRDkNQ==";
+        url = "https://registry.npmjs.org/azure-arm-website/-/azure-arm-website-5.5.0.tgz";
+        sha512 = "fppYG7UtrFNtuMPlyIpWItC7D6pcU4Nhu0UAs9uew42jubQG+PTNRSCadGMuOlANCBEUVtAGMk4jfUU2UGhKTw==";
       };
     };
     "azure-asm-compute-0.18.0" = {
@@ -3721,13 +3739,13 @@ let
         sha512 = "SkMg4vVrQ7Vd7/h8h3qZzURQysV4KJqUIy4pjs/XRjVbCduSePlJ3EOgAl9ed739RWkT906xIAU3tu2Pf5RKFQ==";
       };
     };
-    "azure-storage-2.10.1" = {
+    "azure-storage-2.10.2" = {
       name = "azure-storage";
       packageName = "azure-storage";
-      version = "2.10.1";
+      version = "2.10.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/azure-storage/-/azure-storage-2.10.1.tgz";
-        sha512 = "rnFo1uMIPtilusRCpK91tfY3P4Q7qRsDNwriXdp+OeTIGkGt0cTxL4mhqYfNPYPK+WBQmBdGWhOk+iROM05dcw==";
+        url = "https://registry.npmjs.org/azure-storage/-/azure-storage-2.10.2.tgz";
+        sha512 = "pOyGPya9+NDpAfm5YcFfklo57HfjDbYLXxs4lomPwvRxmb0Di/A+a+RkUmEFzaQ8S13CqxK40bRRB0sjj2ZQxA==";
       };
     };
     "babel-code-frame-6.26.0" = {
@@ -4108,15 +4126,6 @@ let
         sha1 = "45221ee429f7ee1e5035be3f51533f1cdfd29884";
       };
     };
-    "basic-auth-2.0.0" = {
-      name = "basic-auth";
-      packageName = "basic-auth";
-      version = "2.0.0";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/basic-auth/-/basic-auth-2.0.0.tgz";
-        sha1 = "015db3f353e02e56377755f962742e8981e7bbba";
-      };
-    };
     "basic-auth-2.0.1" = {
       name = "basic-auth";
       packageName = "basic-auth";
@@ -4527,7 +4536,7 @@ let
       packageName = "blob";
       version = "0.0.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/blob/-/blob-0.0.2.tgz";
+        url = "http://registry.npmjs.org/blob/-/blob-0.0.2.tgz";
         sha1 = "b89562bd6994af95ba1e812155536333aa23cf24";
       };
     };
@@ -4536,10 +4545,19 @@ let
       packageName = "blob";
       version = "0.0.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/blob/-/blob-0.0.4.tgz";
+        url = "http://registry.npmjs.org/blob/-/blob-0.0.4.tgz";
         sha1 = "bcf13052ca54463f30f9fc7e95b9a47630a94921";
       };
     };
+    "blob-0.0.5" = {
+      name = "blob";
+      packageName = "blob";
+      version = "0.0.5";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/blob/-/blob-0.0.5.tgz";
+        sha512 = "gaqbzQPqOoamawKg0LGVd7SzLgXS+JH61oWprSLH+P+abTczqJbhTR8CmJ2u9/bUYNmHTGJx/UEmn6doAvvuig==";
+      };
+    };
     "blob-to-buffer-1.2.8" = {
       name = "blob-to-buffer";
       packageName = "blob-to-buffer";
@@ -4585,6 +4603,15 @@ let
         sha1 = "61a26904d43d7f6b19dff7ed917dbc92452ad6d3";
       };
     };
+    "bluebird-3.4.7" = {
+      name = "bluebird";
+      packageName = "bluebird";
+      version = "3.4.7";
+      src = fetchurl {
+        url = "http://registry.npmjs.org/bluebird/-/bluebird-3.4.7.tgz";
+        sha1 = "f72d760be09b7f76d08ed8fae98b289a8d05fab3";
+      };
+    };
     "bluebird-3.5.2" = {
       name = "bluebird";
       packageName = "bluebird";
@@ -4644,7 +4671,7 @@ let
       packageName = "body-parser";
       version = "1.12.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/body-parser/-/body-parser-1.12.4.tgz";
+        url = "http://registry.npmjs.org/body-parser/-/body-parser-1.12.4.tgz";
         sha1 = "090700c4ba28862a8520ef378395fdee5f61c229";
       };
     };
@@ -4653,19 +4680,10 @@ let
       packageName = "body-parser";
       version = "1.13.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/body-parser/-/body-parser-1.13.3.tgz";
+        url = "http://registry.npmjs.org/body-parser/-/body-parser-1.13.3.tgz";
         sha1 = "c08cf330c3358e151016a05746f13f029c97fa97";
       };
     };
-    "body-parser-1.18.2" = {
-      name = "body-parser";
-      packageName = "body-parser";
-      version = "1.18.2";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/body-parser/-/body-parser-1.18.2.tgz";
-        sha1 = "87678a19d84b47d859b83199bd59bce222b10454";
-      };
-    };
     "body-parser-1.18.3" = {
       name = "body-parser";
       packageName = "body-parser";
@@ -4698,7 +4716,7 @@ let
       packageName = "boom";
       version = "0.3.8";
       src = fetchurl {
-        url = "https://registry.npmjs.org/boom/-/boom-0.3.8.tgz";
+        url = "http://registry.npmjs.org/boom/-/boom-0.3.8.tgz";
         sha1 = "c8cdb041435912741628c044ecc732d1d17c09ea";
       };
     };
@@ -4707,7 +4725,7 @@ let
       packageName = "boom";
       version = "2.10.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/boom/-/boom-2.10.1.tgz";
+        url = "http://registry.npmjs.org/boom/-/boom-2.10.1.tgz";
         sha1 = "39c8918ceff5799f83f9492a848f625add0c766f";
       };
     };
@@ -5013,7 +5031,7 @@ let
       packageName = "browserify-transform-tools";
       version = "1.7.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/browserify-transform-tools/-/browserify-transform-tools-1.7.0.tgz";
+        url = "http://registry.npmjs.org/browserify-transform-tools/-/browserify-transform-tools-1.7.0.tgz";
         sha1 = "83e277221f63259bed2e7eb2a283a970a501f4c4";
       };
     };
@@ -5188,6 +5206,15 @@ let
         sha512 = "4/rOEg86jivtPTeOUUT61jJO1Ya1TrR/OkqCSZDyq84WJh3LuuiphBYJN+fm5xufIk4XAFcEwte/8WzC8If/1g==";
       };
     };
+    "buffer-indexof-polyfill-1.0.1" = {
+      name = "buffer-indexof-polyfill";
+      packageName = "buffer-indexof-polyfill";
+      version = "1.0.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/buffer-indexof-polyfill/-/buffer-indexof-polyfill-1.0.1.tgz";
+        sha1 = "a9fb806ce8145d5428510ce72f278bb363a638bf";
+      };
+    };
     "buffer-xor-1.0.3" = {
       name = "buffer-xor";
       packageName = "buffer-xor";
@@ -5350,13 +5377,13 @@ let
         sha1 = "741c5216468eadc457b03410118ad77de8c1ddb1";
       };
     };
-    "byte-size-4.0.3" = {
+    "byte-size-4.0.4" = {
       name = "byte-size";
       packageName = "byte-size";
-      version = "4.0.3";
+      version = "4.0.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/byte-size/-/byte-size-4.0.3.tgz";
-        sha512 = "JGC3EV2bCzJH/ENSh3afyJrH4vwxbHTuO5ljLoI5+2iJOcEpMgP8T782jH9b5qGxf2mSUIp1lfGnfKNrRHpvVg==";
+        url = "https://registry.npmjs.org/byte-size/-/byte-size-4.0.4.tgz";
+        sha512 = "82RPeneC6nqCdSwCX2hZUz3JPOvN5at/nTEw/CMf05Smu3Hrpo9Psb7LjN+k+XndNArG1EY8L4+BM3aTM4BCvw==";
       };
     };
     "bytebuffer-3.5.5" = {
@@ -5454,17 +5481,17 @@ let
       packageName = "cacache";
       version = "10.0.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/cacache/-/cacache-10.0.4.tgz";
+        url = "http://registry.npmjs.org/cacache/-/cacache-10.0.4.tgz";
         sha512 = "Dph0MzuH+rTQzGPNT9fAnrPmMmjKfST6trxJeK7NQuHRaVw24VzPRWTmg9MpcwOVQZO0E1FBICUlFeNaKPIfHA==";
       };
     };
-    "cacache-11.2.0" = {
+    "cacache-11.3.0" = {
       name = "cacache";
       packageName = "cacache";
-      version = "11.2.0";
+      version = "11.3.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/cacache/-/cacache-11.2.0.tgz";
-        sha512 = "IFWl6lfK6wSeYCHUXh+N1lY72UDrpyrYQJNIVQf48paDuWbv5RbAtJYf/4gUQFObTCHZwdZ5sI8Iw7nqwP6nlQ==";
+        url = "https://registry.npmjs.org/cacache/-/cacache-11.3.0.tgz";
+        sha512 = "6Af/h56f+GXGAuxfutTZGxOofff+PfaZ3K0XlXjMAzS8HHijzNYySP8zHrJ0vniSzd4wrMgwOHegWh695pHSRA==";
       };
     };
     "cache-base-1.0.1" = {
@@ -5634,7 +5661,7 @@ let
       packageName = "camelcase-keys";
       version = "2.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/camelcase-keys/-/camelcase-keys-2.1.0.tgz";
+        url = "http://registry.npmjs.org/camelcase-keys/-/camelcase-keys-2.1.0.tgz";
         sha1 = "308beeaffdf28119051efa1d932213c91b8f92e7";
       };
     };
@@ -5940,7 +5967,7 @@ let
       packageName = "cheerio";
       version = "0.17.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/cheerio/-/cheerio-0.17.0.tgz";
+        url = "http://registry.npmjs.org/cheerio/-/cheerio-0.17.0.tgz";
         sha1 = "fa5ae42cc60121133d296d0b46d983215f7268ea";
       };
     };
@@ -5949,7 +5976,7 @@ let
       packageName = "cheerio";
       version = "0.20.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/cheerio/-/cheerio-0.20.0.tgz";
+        url = "http://registry.npmjs.org/cheerio/-/cheerio-0.20.0.tgz";
         sha1 = "5c710f2bab95653272842ba01c6ea61b3545ec35";
       };
     };
@@ -5958,7 +5985,7 @@ let
       packageName = "cheerio";
       version = "0.22.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/cheerio/-/cheerio-0.22.0.tgz";
+        url = "http://registry.npmjs.org/cheerio/-/cheerio-0.22.0.tgz";
         sha1 = "a9baa860a3f9b595a6b81b1a86873121ed3a269e";
       };
     };
@@ -6133,13 +6160,13 @@ let
         sha512 = "UZK3NBx2Mca+b5LsG7bY183pHWt5Y1xts4P3Pz7ENTwGVnJOUWbRb3ocjvX7hx9tq/yTAdclXm9sZ38gNuem4A==";
       };
     };
-    "circular-json-0.5.7" = {
+    "circular-json-0.5.9" = {
       name = "circular-json";
       packageName = "circular-json";
-      version = "0.5.7";
+      version = "0.5.9";
       src = fetchurl {
-        url = "https://registry.npmjs.org/circular-json/-/circular-json-0.5.7.tgz";
-        sha512 = "/pXoV1JA847qRKPrHbBK6YIBGFF8GOP4wzSgUOA7q0ew0vAv0iJswP+2/nZQ9uzA3Azi7eTrg9L2yzXc/7ZMIA==";
+        url = "https://registry.npmjs.org/circular-json/-/circular-json-0.5.9.tgz";
+        sha512 = "4ivwqHpIFJZBuhN3g/pEcdbnGUywkBblloGbkglyloVjjR3uT6tieI89MVOfbP2tHX5sgb01FuLgAOzebNlJNQ==";
       };
     };
     "clarinet-0.11.0" = {
@@ -6210,7 +6237,7 @@ let
       packageName = "cli-color";
       version = "0.1.7";
       src = fetchurl {
-        url = "https://registry.npmjs.org/cli-color/-/cli-color-0.1.7.tgz";
+        url = "http://registry.npmjs.org/cli-color/-/cli-color-0.1.7.tgz";
         sha1 = "adc3200fa471cc211b0da7f566b71e98b9d67347";
       };
     };
@@ -6826,15 +6853,6 @@ let
         sha1 = "0137e657baa5a7541c57ac37ac5fc07d73b4dc1f";
       };
     };
-    "combined-stream-1.0.6" = {
-      name = "combined-stream";
-      packageName = "combined-stream";
-      version = "1.0.6";
-      src = fetchurl {
-        url = "http://registry.npmjs.org/combined-stream/-/combined-stream-1.0.6.tgz";
-        sha1 = "723e7df6e801ac5613113a7e445a9b69cb632818";
-      };
-    };
     "combined-stream-1.0.7" = {
       name = "combined-stream";
       packageName = "combined-stream";
@@ -7561,53 +7579,53 @@ let
       packageName = "conventional-changelog-angular";
       version = "1.6.6";
       src = fetchurl {
-        url = "https://registry.npmjs.org/conventional-changelog-angular/-/conventional-changelog-angular-1.6.6.tgz";
+        url = "http://registry.npmjs.org/conventional-changelog-angular/-/conventional-changelog-angular-1.6.6.tgz";
         sha512 = "suQnFSqCxRwyBxY68pYTsFkG0taIdinHLNEAX5ivtw8bCRnIgnpvcHmlR/yjUyZIrNPYAoXlY1WiEKWgSE4BNg==";
       };
     };
-    "conventional-changelog-angular-5.0.1" = {
+    "conventional-changelog-angular-5.0.2" = {
       name = "conventional-changelog-angular";
       packageName = "conventional-changelog-angular";
-      version = "5.0.1";
+      version = "5.0.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/conventional-changelog-angular/-/conventional-changelog-angular-5.0.1.tgz";
-        sha512 = "q4ylJ68fWZDdrFC9z4zKcf97HW6hp7Mo2YlqD4owfXhecFKy/PJCU/1oVFF4TqochchChqmZ0Vb0e0g8/MKNlA==";
+        url = "https://registry.npmjs.org/conventional-changelog-angular/-/conventional-changelog-angular-5.0.2.tgz";
+        sha512 = "yx7m7lVrXmt4nKWQgWZqxSALEiAKZhOAcbxdUaU9575mB0CzXVbgrgpfSnSP7OqWDUTYGD0YVJ0MSRdyOPgAwA==";
       };
     };
-    "conventional-changelog-core-3.1.0" = {
+    "conventional-changelog-core-3.1.5" = {
       name = "conventional-changelog-core";
       packageName = "conventional-changelog-core";
-      version = "3.1.0";
+      version = "3.1.5";
       src = fetchurl {
-        url = "https://registry.npmjs.org/conventional-changelog-core/-/conventional-changelog-core-3.1.0.tgz";
-        sha512 = "bcZkcFXkqVgG2W8m/1wjlp2wn/BKDcrPgw3/mvSEQtzs8Pax8JbAPFpEQReHY92+EKNNXC67wLA8y2xcNx0rDA==";
+        url = "https://registry.npmjs.org/conventional-changelog-core/-/conventional-changelog-core-3.1.5.tgz";
+        sha512 = "iwqAotS4zk0wA4S84YY1JCUG7X3LxaRjJxuUo6GI4dZuIy243j5nOg/Ora35ExT4DOiw5dQbMMQvw2SUjh6moQ==";
       };
     };
-    "conventional-changelog-preset-loader-2.0.1" = {
+    "conventional-changelog-preset-loader-2.0.2" = {
       name = "conventional-changelog-preset-loader";
       packageName = "conventional-changelog-preset-loader";
-      version = "2.0.1";
+      version = "2.0.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/conventional-changelog-preset-loader/-/conventional-changelog-preset-loader-2.0.1.tgz";
-        sha512 = "HiSfhXNzAzG9klIqJaA97MMiNBR4js+53g4Px0k7tgKeCNVXmrDrm+CY+nIqcmG5NVngEPf8rAr7iji1TWW7zg==";
+        url = "https://registry.npmjs.org/conventional-changelog-preset-loader/-/conventional-changelog-preset-loader-2.0.2.tgz";
+        sha512 = "pBY+qnUoJPXAXXqVGwQaVmcye05xi6z231QM98wHWamGAmu/ghkBprQAwmF5bdmyobdVxiLhPY3PrCfSeUNzRQ==";
       };
     };
-    "conventional-changelog-writer-4.0.0" = {
+    "conventional-changelog-writer-4.0.2" = {
       name = "conventional-changelog-writer";
       packageName = "conventional-changelog-writer";
-      version = "4.0.0";
+      version = "4.0.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/conventional-changelog-writer/-/conventional-changelog-writer-4.0.0.tgz";
-        sha512 = "hMZPe0AQ6Bi05epeK/7hz80xxk59nPA5z/b63TOHq2wigM0/akreOc8N4Jam5b9nFgKWX1e9PdPv2ewgW6bcfg==";
+        url = "https://registry.npmjs.org/conventional-changelog-writer/-/conventional-changelog-writer-4.0.2.tgz";
+        sha512 = "d8/FQY/fix2xXEBUhOo8u3DCbyEw3UOQgYHxLsPDw+wHUDma/GQGAGsGtoH876WyNs32fViHmTOUrgRKVLvBug==";
       };
     };
-    "conventional-commits-filter-2.0.0" = {
+    "conventional-commits-filter-2.0.1" = {
       name = "conventional-commits-filter";
       packageName = "conventional-commits-filter";
-      version = "2.0.0";
+      version = "2.0.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/conventional-commits-filter/-/conventional-commits-filter-2.0.0.tgz";
-        sha512 = "Cfl0j1/NquB/TMVx7Wrmyq7uRM+/rPQbtVVGwzfkhZ6/yH6fcMmP0Q/9044TBZPTNdGzm46vXFXL14wbET0/Mg==";
+        url = "https://registry.npmjs.org/conventional-commits-filter/-/conventional-commits-filter-2.0.1.tgz";
+        sha512 = "92OU8pz/977udhBjgPEbg3sbYzIxMDFTlQT97w7KdhR9igNqdJvy8smmedAAgn4tPiqseFloKkrVfbXCVd+E7A==";
       };
     };
     "conventional-commits-parser-2.1.7" = {
@@ -7615,26 +7633,26 @@ let
       packageName = "conventional-commits-parser";
       version = "2.1.7";
       src = fetchurl {
-        url = "https://registry.npmjs.org/conventional-commits-parser/-/conventional-commits-parser-2.1.7.tgz";
+        url = "http://registry.npmjs.org/conventional-commits-parser/-/conventional-commits-parser-2.1.7.tgz";
         sha512 = "BoMaddIEJ6B4QVMSDu9IkVImlGOSGA1I2BQyOZHeLQ6qVOJLcLKn97+fL6dGbzWEiqDzfH4OkcveULmeq2MHFQ==";
       };
     };
-    "conventional-commits-parser-3.0.0" = {
+    "conventional-commits-parser-3.0.1" = {
       name = "conventional-commits-parser";
       packageName = "conventional-commits-parser";
-      version = "3.0.0";
+      version = "3.0.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/conventional-commits-parser/-/conventional-commits-parser-3.0.0.tgz";
-        sha512 = "GWh71U26BLWgMykCp+VghZ4s64wVbtseECcKQ/PvcPZR2cUnz+FUc2J9KjxNl7/ZbCxST8R03c9fc+Vi0umS9Q==";
+        url = "https://registry.npmjs.org/conventional-commits-parser/-/conventional-commits-parser-3.0.1.tgz";
+        sha512 = "P6U5UOvDeidUJ8ebHVDIoXzI7gMlQ1OF/id6oUvp8cnZvOXMt1n8nYl74Ey9YMn0uVQtxmCtjPQawpsssBWtGg==";
       };
     };
-    "conventional-recommended-bump-4.0.1" = {
+    "conventional-recommended-bump-4.0.4" = {
       name = "conventional-recommended-bump";
       packageName = "conventional-recommended-bump";
-      version = "4.0.1";
+      version = "4.0.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/conventional-recommended-bump/-/conventional-recommended-bump-4.0.1.tgz";
-        sha512 = "9waJvW01TUs4HQJ3khwGSSlTlKsY+5u7OrxHL+oWEoGNvaNO/0qL6qqnhS3J0Fq9fNKA9bmlf5cOXjCQoW+I4Q==";
+        url = "https://registry.npmjs.org/conventional-recommended-bump/-/conventional-recommended-bump-4.0.4.tgz";
+        sha512 = "9mY5Yoblq+ZMqJpBzgS+RpSq+SUfP2miOR3H/NR9drGf08WCrY9B6HAGJZEm6+ThsVP917VHAahSOjM6k1vhPg==";
       };
     };
     "convert-source-map-1.1.3" = {
@@ -7799,13 +7817,13 @@ let
         sha512 = "Mw+adcfzPxcPeI+0WlvRrr/3lGVO0bD75SxX6811cxSh1Wbxx7xZBGK1eVtDf6si8rg2lhnUjsVLMFMfbRIuwA==";
       };
     };
-    "cookies-0.7.2" = {
+    "cookies-0.7.3" = {
       name = "cookies";
       packageName = "cookies";
-      version = "0.7.2";
+      version = "0.7.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/cookies/-/cookies-0.7.2.tgz";
-        sha512 = "J2JjH9T3PUNKPHknprxgCrCaZshIfxW2j49gq1E1CP5Micj1LppWAR2y9EHSQAzEiX84zOsScWNwUZ0b/ChlMw==";
+        url = "https://registry.npmjs.org/cookies/-/cookies-0.7.3.tgz";
+        sha512 = "+gixgxYSgQLTaTIilDHAdlNPZDENDQernEMiIcZpYYP14zgHsCt4Ce1FEjFtcp6GefhozebB6orvhAAWx/IS0A==";
       };
     };
     "copy-concurrently-1.0.5" = {
@@ -7912,7 +7930,7 @@ let
       packageName = "core-js";
       version = "2.3.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/core-js/-/core-js-2.3.0.tgz";
+        url = "http://registry.npmjs.org/core-js/-/core-js-2.3.0.tgz";
         sha1 = "fab83fbb0b2d8dc85fa636c4b9d34c75420c6d65";
       };
     };
@@ -7943,6 +7961,15 @@ let
         sha1 = "2bd381f2eb201020105cd50ea59da63090694686";
       };
     };
+    "cors-2.8.5" = {
+      name = "cors";
+      packageName = "cors";
+      version = "2.8.5";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/cors/-/cors-2.8.5.tgz";
+        sha512 = "KIHbLJqu73RGr/hnbrO9uBeixNGuvSQjul/jdFvS/KFSIH1hWVd1ng7zOHx+YrEfInLG7q4n6GHQ9cDtxv/P6g==";
+      };
+    };
     "corser-2.0.1" = {
       name = "corser";
       packageName = "corser";
@@ -8105,13 +8132,13 @@ let
         sha512 = "KMd0KuvwVUg1grlRd5skG9ZkSbBYDDkAjDUMLnvxdRn0rL7ph3IwoOk7I8u1yLX4HYjGiLVlWYO55YWNNPjJFA==";
       };
     };
-    "cron-1.4.1" = {
+    "cron-1.5.0" = {
       name = "cron";
       packageName = "cron";
-      version = "1.4.1";
+      version = "1.5.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/cron/-/cron-1.4.1.tgz";
-        sha512 = "HlglwQUNh6bhgfoDR6aEzyHN2T4bc0XhxJxkNPp+Ry7lK7Noby94pHcngYf634+MtxplwZm8okFgNe+R9PGDjg==";
+        url = "https://registry.npmjs.org/cron/-/cron-1.5.0.tgz";
+        sha512 = "j7zMFLrcSta53xqOvETUt8ge+PM14GtF47gEGJJeVlM6qP24/eWHSgtiWiEiKBR2sHS8xZaBQZq4D7vFXg8dcQ==";
       };
     };
     "cross-fetch-2.2.2" = {
@@ -8164,7 +8191,7 @@ let
       packageName = "cross-spawn-async";
       version = "2.2.5";
       src = fetchurl {
-        url = "https://registry.npmjs.org/cross-spawn-async/-/cross-spawn-async-2.2.5.tgz";
+        url = "http://registry.npmjs.org/cross-spawn-async/-/cross-spawn-async-2.2.5.tgz";
         sha1 = "845ff0c0834a3ded9d160daca6d390906bb288cc";
       };
     };
@@ -8209,7 +8236,7 @@ let
       packageName = "cryptiles";
       version = "0.1.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/cryptiles/-/cryptiles-0.1.3.tgz";
+        url = "http://registry.npmjs.org/cryptiles/-/cryptiles-0.1.3.tgz";
         sha1 = "1a556734f06d24ba34862ae9cb9e709a3afbff1c";
       };
     };
@@ -8218,17 +8245,17 @@ let
       packageName = "cryptiles";
       version = "2.0.5";
       src = fetchurl {
-        url = "https://registry.npmjs.org/cryptiles/-/cryptiles-2.0.5.tgz";
+        url = "http://registry.npmjs.org/cryptiles/-/cryptiles-2.0.5.tgz";
         sha1 = "3bdfecdc608147c1c67202fa291e7dca59eaa3b8";
       };
     };
-    "cryptiles-3.1.2" = {
+    "cryptiles-3.1.3" = {
       name = "cryptiles";
       packageName = "cryptiles";
-      version = "3.1.2";
+      version = "3.1.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/cryptiles/-/cryptiles-3.1.2.tgz";
-        sha1 = "a89fbb220f5ce25ec56e8c4aa8a4fd7b5b0d29fe";
+        url = "https://registry.npmjs.org/cryptiles/-/cryptiles-3.1.3.tgz";
+        sha512 = "8dAQYBGMc/c0oOfLED0/t7XJ3DOiGqxwBT9qsj4KrW7e3ICflVCUpXZj8GbjEW38eYueJfGWlMq6dEX6cnWoyg==";
       };
     };
     "crypto-0.0.3" = {
@@ -8308,26 +8335,26 @@ let
       packageName = "css-select";
       version = "1.2.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/css-select/-/css-select-1.2.0.tgz";
+        url = "http://registry.npmjs.org/css-select/-/css-select-1.2.0.tgz";
         sha1 = "2b3a110539c5355f1cd8d314623e870b121ec858";
       };
     };
-    "css-select-2.0.0" = {
+    "css-select-2.0.2" = {
       name = "css-select";
       packageName = "css-select";
-      version = "2.0.0";
+      version = "2.0.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/css-select/-/css-select-2.0.0.tgz";
-        sha512 = "MGhoq1S9EyPgZIGnts8Yz5WwUOyHmPMdlqeifsYs/xFX7AAm3hY0RJe1dqVlXtYPI66Nsk39R/sa5/ree6L2qg==";
+        url = "https://registry.npmjs.org/css-select/-/css-select-2.0.2.tgz";
+        sha512 = "dSpYaDVoWaELjvZ3mS6IKZM/y2PMPa/XYoEfYNZePL4U/XgyxZNroHEHReDx/d+VgXh9VbCTtFqLkFbmeqeaRQ==";
       };
     };
-    "css-select-base-adapter-0.1.0" = {
+    "css-select-base-adapter-0.1.1" = {
       name = "css-select-base-adapter";
       packageName = "css-select-base-adapter";
-      version = "0.1.0";
+      version = "0.1.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/css-select-base-adapter/-/css-select-base-adapter-0.1.0.tgz";
-        sha1 = "0102b3d14630df86c3eb9fa9f5456270106cf990";
+        url = "https://registry.npmjs.org/css-select-base-adapter/-/css-select-base-adapter-0.1.1.tgz";
+        sha512 = "jQVeeRG70QI08vSTwf1jHxp74JoZsr2XSgETae8/xC8ovSnL2WF87GTLO86Sbwdt2lK4Umg4HnnwMO4YF3Ce7w==";
       };
     };
     "css-stringify-1.0.5" = {
@@ -8366,13 +8393,13 @@ let
         sha1 = "83834230cc9f74c457de59eebd1543feeb83b7ec";
       };
     };
-    "css-what-2.1.0" = {
+    "css-what-2.1.2" = {
       name = "css-what";
       packageName = "css-what";
-      version = "2.1.0";
+      version = "2.1.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/css-what/-/css-what-2.1.0.tgz";
-        sha1 = "9467d032c38cfaefb9f2d79501253062f87fa1bd";
+        url = "https://registry.npmjs.org/css-what/-/css-what-2.1.2.tgz";
+        sha512 = "wan8dMWQ0GUeF7DGEPVjhHemVW/vy6xUYmFzRY8RYqgA0JtXC9rJmbScBjqSu6dg9q0lwPQy6ZAmJVr3PPTvqQ==";
       };
     };
     "cssauron-1.4.0" = {
@@ -8456,6 +8483,15 @@ let
         sha1 = "d1cfd8743c2f849a0abb2fd544db56695d19a490";
       };
     };
+    "csv-parser-1.12.1" = {
+      name = "csv-parser";
+      packageName = "csv-parser";
+      version = "1.12.1";
+      src = fetchurl {
+        url = "http://registry.npmjs.org/csv-parser/-/csv-parser-1.12.1.tgz";
+        sha512 = "r45M92nLnGP246ot0Yo5RvbiiMF5Bw/OTIdWJ3OQ4Vbv4hpOeoXVIPxdSmUw+fPJlQOseY+iigJyLSfPMIrddQ==";
+      };
+    };
     "csv-stringify-0.0.8" = {
       name = "csv-stringify";
       packageName = "csv-stringify";
@@ -8470,7 +8506,7 @@ let
       packageName = "ctype";
       version = "0.5.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/ctype/-/ctype-0.5.2.tgz";
+        url = "http://registry.npmjs.org/ctype/-/ctype-0.5.2.tgz";
         sha1 = "fe8091d468a373a0b0c9ff8bbfb3425c00973a1d";
       };
     };
@@ -8479,7 +8515,7 @@ let
       packageName = "ctype";
       version = "0.5.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/ctype/-/ctype-0.5.3.tgz";
+        url = "http://registry.npmjs.org/ctype/-/ctype-0.5.3.tgz";
         sha1 = "82c18c2461f74114ef16c135224ad0b9144ca12f";
       };
     };
@@ -8578,7 +8614,7 @@ let
       packageName = "d";
       version = "1.0.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/d/-/d-1.0.0.tgz";
+        url = "http://registry.npmjs.org/d/-/d-1.0.0.tgz";
         sha1 = "754bb5bfe55451da69a58b94d45f4c5b0462d58f";
       };
     };
@@ -9221,6 +9257,15 @@ let
         sha512 = "ajbXqRPMXRlcdyt0TuWqknOJkp1JgQjGB7xOl2V+ebol7/U11E9h3/nCZAtN1M7djmAJEIhypCUc1tIWxdQAuQ==";
       };
     };
+    "deferred-leveldown-4.0.2" = {
+      name = "deferred-leveldown";
+      packageName = "deferred-leveldown";
+      version = "4.0.2";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/deferred-leveldown/-/deferred-leveldown-4.0.2.tgz";
+        sha512 = "5fMC8ek8alH16QiV0lTCis610D1Zt1+LA4MS4d63JgS32lrCjTFDUFz2ao09/j2I4Bqb5jL4FZYwu7Jz0XO1ww==";
+      };
+    };
     "define-properties-1.1.3" = {
       name = "define-properties";
       packageName = "define-properties";
@@ -9352,19 +9397,10 @@ let
       packageName = "depd";
       version = "1.0.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/depd/-/depd-1.0.1.tgz";
+        url = "http://registry.npmjs.org/depd/-/depd-1.0.1.tgz";
         sha1 = "80aec64c9d6d97e65cc2a9caa93c0aa6abf73aaa";
       };
     };
-    "depd-1.1.1" = {
-      name = "depd";
-      packageName = "depd";
-      version = "1.1.1";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/depd/-/depd-1.1.1.tgz";
-        sha1 = "5783b4e1c459f06fa5ca27f991f3d06e7a310359";
-      };
-    };
     "depd-1.1.2" = {
       name = "depd";
       packageName = "depd";
@@ -9635,6 +9671,15 @@ let
         sha1 = "4d5afc5187edba67ec6ab0e55f6422a0e2cb7338";
       };
     };
+    "discontinuous-range-1.0.0" = {
+      name = "discontinuous-range";
+      packageName = "discontinuous-range";
+      version = "1.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/discontinuous-range/-/discontinuous-range-1.0.0.tgz";
+        sha1 = "e38331f0844bba49b9a9cb71c771585aab1bc65a";
+      };
+    };
     "discovery-channel-5.5.1" = {
       name = "discovery-channel";
       packageName = "discovery-channel";
@@ -9874,7 +9919,7 @@ let
       packageName = "domelementtype";
       version = "1.1.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/domelementtype/-/domelementtype-1.1.3.tgz";
+        url = "http://registry.npmjs.org/domelementtype/-/domelementtype-1.1.3.tgz";
         sha1 = "bd28773e2642881aec51544924299c5cd822185b";
       };
     };
@@ -9883,7 +9928,7 @@ let
       packageName = "domelementtype";
       version = "1.3.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/domelementtype/-/domelementtype-1.3.0.tgz";
+        url = "http://registry.npmjs.org/domelementtype/-/domelementtype-1.3.0.tgz";
         sha1 = "b17aed82e8ab59e52dd9c19b1756e0fc187204c2";
       };
     };
@@ -10379,7 +10424,7 @@ let
       packageName = "enabled";
       version = "1.0.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/enabled/-/enabled-1.0.2.tgz";
+        url = "http://registry.npmjs.org/enabled/-/enabled-1.0.2.tgz";
         sha1 = "965f6513d2c2d1c5f4652b64a2e3396467fc2f93";
       };
     };
@@ -10410,6 +10455,15 @@ let
         sha512 = "AlSE+ugBIpLL0i9if2SlnOZ4oWj/XvBb8tw2Ie/pFB73vdYs5O/6plRyqIgjbZbz8onaL20AAuMP87LWbP56IQ==";
       };
     };
+    "encoding-down-5.0.4" = {
+      name = "encoding-down";
+      packageName = "encoding-down";
+      version = "5.0.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/encoding-down/-/encoding-down-5.0.4.tgz";
+        sha512 = "8CIZLDcSKxgzT+zX8ZVfgNbu8Md2wq/iqa1Y7zyVR18QBEAc0Nmzuvj/N5ykSKpfGzjM8qxbaFntLPwnVoUhZw==";
+      };
+    };
     "end-of-stream-0.1.5" = {
       name = "end-of-stream";
       packageName = "end-of-stream";
@@ -10460,7 +10514,7 @@ let
       packageName = "engine.io";
       version = "1.3.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/engine.io/-/engine.io-1.3.1.tgz";
+        url = "http://registry.npmjs.org/engine.io/-/engine.io-1.3.1.tgz";
         sha1 = "2d968308fffae5d17f5209b6775246e90d8a705e";
       };
     };
@@ -10473,13 +10527,13 @@ let
         sha512 = "j1DWIcktw4hRwrv6nWx++5nFH2X64x16MAG2P0Lmi5Dvdfi3I+Jhc7JKJIdAmDJa+5aZ/imHV7dWRPy2Cqjh3A==";
       };
     };
-    "engine.io-3.2.0" = {
+    "engine.io-3.2.1" = {
       name = "engine.io";
       packageName = "engine.io";
-      version = "3.2.0";
+      version = "3.2.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/engine.io/-/engine.io-3.2.0.tgz";
-        sha512 = "mRbgmAtQ4GAlKwuPnnAvXXwdPhEx+jkc0OBCLrXuD/CRvwNK3AxRSnqK4FSqmAMRRHryVJP8TopOvmEaA64fKw==";
+        url = "https://registry.npmjs.org/engine.io/-/engine.io-3.2.1.tgz";
+        sha512 = "+VlKzHzMhaU+GsCIg4AoXF1UdDFjHHwMmMKqMJNDNLlUlejz58FCy4LBqB2YVJskHGYl06BatYWKP2TVdVXE5w==";
       };
     };
     "engine.io-client-1.3.1" = {
@@ -10514,7 +10568,7 @@ let
       packageName = "engine.io-parser";
       version = "1.0.6";
       src = fetchurl {
-        url = "https://registry.npmjs.org/engine.io-parser/-/engine.io-parser-1.0.6.tgz";
+        url = "http://registry.npmjs.org/engine.io-parser/-/engine.io-parser-1.0.6.tgz";
         sha1 = "d38813143a411cb3b914132ab05bf99e6f7a248e";
       };
     };
@@ -10523,17 +10577,17 @@ let
       packageName = "engine.io-parser";
       version = "1.3.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/engine.io-parser/-/engine.io-parser-1.3.2.tgz";
+        url = "http://registry.npmjs.org/engine.io-parser/-/engine.io-parser-1.3.2.tgz";
         sha1 = "937b079f0007d0893ec56d46cb220b8cb435220a";
       };
     };
-    "engine.io-parser-2.1.2" = {
+    "engine.io-parser-2.1.3" = {
       name = "engine.io-parser";
       packageName = "engine.io-parser";
-      version = "2.1.2";
+      version = "2.1.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/engine.io-parser/-/engine.io-parser-2.1.2.tgz";
-        sha512 = "dInLFzr80RijZ1rGpx1+56/uFoH7/7InhH3kZt+Ms6hT8tNx3NGW/WNSA/f8As1WkOfkuyb3tnRyuXGxusclMw==";
+        url = "https://registry.npmjs.org/engine.io-parser/-/engine.io-parser-2.1.3.tgz";
+        sha512 = "6HXPre2O4Houl7c4g7Ic/XzPnHBvaEmN90vtRO9uLmwtRqQmTOw0QMevL1TOfL2Cpu1VzsaTmMotQgMdkzGkVA==";
       };
     };
     "enhanced-resolve-2.3.0" = {
@@ -10577,17 +10631,17 @@ let
       packageName = "entities";
       version = "1.0.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/entities/-/entities-1.0.0.tgz";
+        url = "http://registry.npmjs.org/entities/-/entities-1.0.0.tgz";
         sha1 = "b2987aa3821347fcde642b24fdfc9e4fb712bf26";
       };
     };
-    "entities-1.1.1" = {
+    "entities-1.1.2" = {
       name = "entities";
       packageName = "entities";
-      version = "1.1.1";
+      version = "1.1.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/entities/-/entities-1.1.1.tgz";
-        sha1 = "6e5c2d0a5621b5dadaecef80b90edfb5cd7772f0";
+        url = "https://registry.npmjs.org/entities/-/entities-1.1.2.tgz";
+        sha512 = "f2LZMYl1Fzu7YSBKg+RoROelpOaNrcGmE9AZubeDfrCEia483oW4MI4VyFd5VNHIgQ/7qm1I0wUHK1eJnn2y2w==";
       };
     };
     "env-paths-1.0.0" = {
@@ -10626,13 +10680,13 @@ let
         sha512 = "rXbzXWvnQxy+TcqZlARbWVQwgGVVouVJgFZhLVN5htjLxl1thstrP2ZGi0pXC309AbK7gVOPU+ulz/tmpCI7iw==";
       };
     };
-    "epidemic-broadcast-trees-6.3.4" = {
+    "epidemic-broadcast-trees-6.3.5" = {
       name = "epidemic-broadcast-trees";
       packageName = "epidemic-broadcast-trees";
-      version = "6.3.4";
+      version = "6.3.5";
       src = fetchurl {
-        url = "https://registry.npmjs.org/epidemic-broadcast-trees/-/epidemic-broadcast-trees-6.3.4.tgz";
-        sha512 = "ucs3AI3ebPCDFGw8B0SUBwzcY2WqKrbJeqYeeX9KF+XvsO7GFEe0L+1hXPfJcEScfGPByXJNACkYwUFnNaOueQ==";
+        url = "https://registry.npmjs.org/epidemic-broadcast-trees/-/epidemic-broadcast-trees-6.3.5.tgz";
+        sha512 = "FYCOslXU7OBkz8A9FXsykcpgby3WKcRdLTCr1LivLLSU2nzaO/x86jBGNFEZkezZPx9/Z5fDVX8SGQyXLz8WZQ==";
       };
     };
     "err-code-1.1.2" = {
@@ -10820,7 +10874,7 @@ let
       packageName = "es6-promisify";
       version = "5.0.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/es6-promisify/-/es6-promisify-5.0.0.tgz";
+        url = "http://registry.npmjs.org/es6-promisify/-/es6-promisify-5.0.0.tgz";
         sha1 = "5109d62f3e56ea967c4b63505aef08291c8a5203";
       };
     };
@@ -10838,7 +10892,7 @@ let
       packageName = "es6-shim";
       version = "0.21.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/es6-shim/-/es6-shim-0.21.1.tgz";
+        url = "http://registry.npmjs.org/es6-shim/-/es6-shim-0.21.1.tgz";
         sha1 = "6621bce72e1ac80a6e1f002abd4e789f12489fd2";
       };
     };
@@ -10959,13 +11013,13 @@ let
         sha512 = "D5nG2rErquLUstgUaxJlWB5+gu+U/3VDY0fk/Iuq8y9CUFy/7Y6oF4N2cR1tV8knzQvciIbfqfohd359xTLIKQ==";
       };
     };
-    "eslint-5.7.0" = {
+    "eslint-5.8.0" = {
       name = "eslint";
       packageName = "eslint";
-      version = "5.7.0";
+      version = "5.8.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/eslint/-/eslint-5.7.0.tgz";
-        sha512 = "zYCeFQahsxffGl87U2aJ7DPyH8CbWgxBC213Y8+TCanhUTf2gEvfq3EKpHmEcozTLyPmGe9LZdMAwC/CpJBM5A==";
+        url = "https://registry.npmjs.org/eslint/-/eslint-5.8.0.tgz";
+        sha512 = "Zok6Bru3y2JprqTNm14mgQ15YQu/SMDkWdnmHfFg770DIUlmMFd/gqqzCHekxzjHZJxXv3tmTpH0C1icaYJsRQ==";
       };
     };
     "eslint-plugin-no-unsafe-innerhtml-1.0.16" = {
@@ -11018,7 +11072,7 @@ let
       packageName = "espree";
       version = "3.5.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/espree/-/espree-3.5.4.tgz";
+        url = "http://registry.npmjs.org/espree/-/espree-3.5.4.tgz";
         sha512 = "yAcIQxtmMiB/jL32dzEp2enBeidsB7xWPLNiw3IIkpVds1P+h7qF9YwJq1yUNzp2OKXgAprs4F61ih66UsoD1A==";
       };
     };
@@ -11031,6 +11085,15 @@ let
         sha512 = "kapdTCt1bjmspxStVKX6huolXVV5ZfyZguY1lcfhVVZstce3bqxH9mcLzNn3/mlgW6wQ732+0fuG9v7h0ZQoKg==";
       };
     };
+    "espree-4.1.0" = {
+      name = "espree";
+      packageName = "espree";
+      version = "4.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/espree/-/espree-4.1.0.tgz";
+        sha512 = "I5BycZW6FCVIub93TeVY1s7vjhP9CY6cXCznIRfiig7nRviKZYdRnj/sHEWC6A7WE9RDWOFq9+7OsWSYz8qv2w==";
+      };
+    };
     "esprima-1.0.4" = {
       name = "esprima";
       packageName = "esprima";
@@ -11373,6 +11436,15 @@ let
         sha1 = "d8d76bbc1b55217ed190fd6dd49d3c774ecfc8da";
       };
     };
+    "execa-0.9.0" = {
+      name = "execa";
+      packageName = "execa";
+      version = "0.9.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/execa/-/execa-0.9.0.tgz";
+        sha512 = "BbUMBiX4hqiHZUA5+JujIjNb6TyAlp2D5KLheMjMluwOuzcnylDL4AxZYLLn1n2AGB49eSWwyKvvEQoRpnAtmA==";
+      };
+    };
     "execa-1.0.0" = {
       name = "execa";
       packageName = "execa";
@@ -11544,15 +11616,6 @@ let
         sha1 = "8df3d5a9ac848585f00a0777601823faecd3b148";
       };
     };
-    "express-4.16.3" = {
-      name = "express";
-      packageName = "express";
-      version = "4.16.3";
-      src = fetchurl {
-        url = "http://registry.npmjs.org/express/-/express-4.16.3.tgz";
-        sha1 = "6af8a502350db3246ecc4becf6b5a34d22f7ed53";
-      };
-    };
     "express-4.16.4" = {
       name = "express";
       packageName = "express";
@@ -11562,13 +11625,13 @@ let
         sha512 = "j12Uuyb4FMrd/qQAm6uCHAkPtO8FDTRJZBDd5D2KOL2eLaz1yUNdUB/NOIyq0iU4q4cFarsUCrnFDPBcnksuOg==";
       };
     };
-    "express-5.0.0-alpha.6" = {
+    "express-5.0.0-alpha.7" = {
       name = "express";
       packageName = "express";
-      version = "5.0.0-alpha.6";
+      version = "5.0.0-alpha.7";
       src = fetchurl {
-        url = "https://registry.npmjs.org/express/-/express-5.0.0-alpha.6.tgz";
-        sha1 = "85dc44d7e90d4809041407f388f239b5bd2f681e";
+        url = "https://registry.npmjs.org/express/-/express-5.0.0-alpha.7.tgz";
+        sha512 = "3FW+yXzYCViXf6Ty9TN9IKLW+rC8qok3ktS4hS1FILAEnMnfnDpQ+23rZVvWC0Ul1alYpJXx7xSBSBp073970g==";
       };
     };
     "express-handlebars-3.0.0" = {
@@ -11769,13 +11832,13 @@ let
         sha512 = "Nmb6QXkELsuBr24CJSkilo6UHHgbekK5UiZgfE6UHD3Eb27YC6oD+bhcT+tJ6cl8dmsgdQxnWlcry8ksBIBLpw==";
       };
     };
-    "extract-files-3.1.0" = {
+    "extract-files-4.1.0" = {
       name = "extract-files";
       packageName = "extract-files";
-      version = "3.1.0";
+      version = "4.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/extract-files/-/extract-files-3.1.0.tgz";
-        sha512 = "urkJPM4N88CMy1AfDw+Avudon6fToTsaG5j5VN0aybn88udv1yrERFCweV78NaZg7DOFsQULkFgvP64vNQFNMQ==";
+        url = "https://registry.npmjs.org/extract-files/-/extract-files-4.1.0.tgz";
+        sha512 = "2gjdb3dVzr1ie9+K8pupPTnsNkK4qmzbTFOIxghiWoh6nCTajGCGC72ZNYX0nBWy5IOq1FXfRVgvkkLqqE4sdw==";
       };
     };
     "extract-opts-3.3.1" = {
@@ -11891,7 +11954,7 @@ let
       packageName = "fast-deep-equal";
       version = "1.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/fast-deep-equal/-/fast-deep-equal-1.1.0.tgz";
+        url = "http://registry.npmjs.org/fast-deep-equal/-/fast-deep-equal-1.1.0.tgz";
         sha1 = "c053477817c86b51daa853c81e059b733d023614";
       };
     };
@@ -12021,15 +12084,6 @@ let
         sha1 = "f0efe18c4f56e4f40afc7e06c719fd5ee6188f38";
       };
     };
-    "fclone-1.0.11" = {
-      name = "fclone";
-      packageName = "fclone";
-      version = "1.0.11";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/fclone/-/fclone-1.0.11.tgz";
-        sha1 = "10e85da38bfea7fc599341c296ee1d77266ee640";
-      };
-    };
     "fd-read-stream-1.1.0" = {
       name = "fd-read-stream";
       packageName = "fd-read-stream";
@@ -12062,7 +12116,7 @@ let
       packageName = "fecha";
       version = "2.3.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/fecha/-/fecha-2.3.3.tgz";
+        url = "http://registry.npmjs.org/fecha/-/fecha-2.3.3.tgz";
         sha512 = "lUGBnIamTAwk4znq5BcqsDaxSmZ9nDVJaij6NvRt/Tg4R69gERA+otPKbS86ROw9nxVMw2/mp1fnaiWqbs6Sdg==";
       };
     };
@@ -12080,7 +12134,7 @@ let
       packageName = "fibers";
       version = "1.0.15";
       src = fetchurl {
-        url = "https://registry.npmjs.org/fibers/-/fibers-1.0.15.tgz";
+        url = "http://registry.npmjs.org/fibers/-/fibers-1.0.15.tgz";
         sha1 = "22f039c8f18b856190fbbe4decf056154c1eae9c";
       };
     };
@@ -12273,15 +12327,6 @@ let
         sha1 = "2c400d8d4530935bc232549c5fa385ec07de6fcd";
       };
     };
-    "finalhandler-1.0.6" = {
-      name = "finalhandler";
-      packageName = "finalhandler";
-      version = "1.0.6";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/finalhandler/-/finalhandler-1.0.6.tgz";
-        sha1 = "007aea33d1a4d3e42017f624848ad58d212f814f";
-      };
-    };
     "finalhandler-1.1.0" = {
       name = "finalhandler";
       packageName = "finalhandler";
@@ -12462,6 +12507,15 @@ let
         sha1 = "b88673c42009f8821fac2926e99720acee924fae";
       };
     };
+    "fkill-5.3.0" = {
+      name = "fkill";
+      packageName = "fkill";
+      version = "5.3.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/fkill/-/fkill-5.3.0.tgz";
+        sha512 = "AHe4x/k9xHlSNPRya0FOCd42qa6ggmW4gtdy6mR0R1vdWtNq9zMd8nmMR5LB7fTNOA1f1nOU+uqaQHP7NMWmVA==";
+      };
+    };
     "flagged-respawn-1.0.0" = {
       name = "flagged-respawn";
       packageName = "flagged-respawn";
@@ -12561,22 +12615,13 @@ let
         sha1 = "36ce06abe2e0e01c44dd69f2a165305a2320649b";
       };
     };
-    "flumecodec-0.0.1" = {
-      name = "flumecodec";
-      packageName = "flumecodec";
-      version = "0.0.1";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/flumecodec/-/flumecodec-0.0.1.tgz";
-        sha1 = "ae049a714386bb83e342657a82924b70364a90d6";
-      };
-    };
-    "flumedb-0.5.1" = {
+    "flumedb-1.0.1" = {
       name = "flumedb";
       packageName = "flumedb";
-      version = "0.5.1";
+      version = "1.0.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/flumedb/-/flumedb-0.5.1.tgz";
-        sha512 = "WB/q5YYEvVB2ozp7xhp3ur5NfX03HZywx6EEV6AlKjd1PodZdHVspz3NpakV++mVB89CRoH2nq+WdY33ntbfQw==";
+        url = "https://registry.npmjs.org/flumedb/-/flumedb-1.0.1.tgz";
+        sha512 = "mT0v0dY9EkWRGwDtTfavYNv2Z6nrMNlVZCNJD7qxjfPJymfv8kNYB4UvDdBHleHegvzjufjnE73IkRG5DgMjww==";
       };
     };
     "flumelog-offset-3.3.2" = {
@@ -12755,7 +12800,7 @@ let
       packageName = "form-data";
       version = "0.0.10";
       src = fetchurl {
-        url = "https://registry.npmjs.org/form-data/-/form-data-0.0.10.tgz";
+        url = "http://registry.npmjs.org/form-data/-/form-data-0.0.10.tgz";
         sha1 = "db345a5378d86aeeb1ed5d553b869ac192d2f5ed";
       };
     };
@@ -12764,7 +12809,7 @@ let
       packageName = "form-data";
       version = "0.1.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/form-data/-/form-data-0.1.3.tgz";
+        url = "http://registry.npmjs.org/form-data/-/form-data-0.1.3.tgz";
         sha1 = "4ee4346e6eb5362e8344a02075bd8dbd8c7373ea";
       };
     };
@@ -12773,7 +12818,7 @@ let
       packageName = "form-data";
       version = "1.0.0-rc3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/form-data/-/form-data-1.0.0-rc3.tgz";
+        url = "http://registry.npmjs.org/form-data/-/form-data-1.0.0-rc3.tgz";
         sha1 = "d35bc62e7fbc2937ae78f948aaa0d38d90607577";
       };
     };
@@ -12782,7 +12827,7 @@ let
       packageName = "form-data";
       version = "1.0.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/form-data/-/form-data-1.0.1.tgz";
+        url = "http://registry.npmjs.org/form-data/-/form-data-1.0.1.tgz";
         sha1 = "ae315db9a4907fa065502304a66d7733475ee37c";
       };
     };
@@ -12795,13 +12840,13 @@ let
         sha1 = "33c183acf193276ecaa98143a69e94bfee1750d1";
       };
     };
-    "form-data-2.3.2" = {
+    "form-data-2.3.3" = {
       name = "form-data";
       packageName = "form-data";
-      version = "2.3.2";
+      version = "2.3.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/form-data/-/form-data-2.3.2.tgz";
-        sha1 = "4970498be604c20c005d4f5c23aecd21d6b49099";
+        url = "https://registry.npmjs.org/form-data/-/form-data-2.3.3.tgz";
+        sha512 = "1lLKB2Mu3aGP1Q/2eCOx0fNbRMe7XdwktwOruhfqqd0rIJWwN4Dh+E3hrPSlDCXnSR7UtZ1N38rVXm+6+MEhJQ==";
       };
     };
     "format-util-1.0.3" = {
@@ -13290,6 +13335,15 @@ let
         sha1 = "336a98f81510f9ae0af2a494e17468a116a9dc04";
       };
     };
+    "generate-function-1.1.0" = {
+      name = "generate-function";
+      packageName = "generate-function";
+      version = "1.1.0";
+      src = fetchurl {
+        url = "http://registry.npmjs.org/generate-function/-/generate-function-1.1.0.tgz";
+        sha1 = "54c21b080192b16d9877779c5bb81666e772365f";
+      };
+    };
     "generate-function-2.3.1" = {
       name = "generate-function";
       packageName = "generate-function";
@@ -13317,13 +13371,13 @@ let
         sha1 = "8b465c1a7588ea9dd2bb133bda0bb66bfef8a63e";
       };
     };
-    "genfun-4.0.1" = {
+    "genfun-5.0.0" = {
       name = "genfun";
       packageName = "genfun";
-      version = "4.0.1";
+      version = "5.0.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/genfun/-/genfun-4.0.1.tgz";
-        sha1 = "ed10041f2e4a7f1b0a38466d17a5c3e27df1dfc1";
+        url = "https://registry.npmjs.org/genfun/-/genfun-5.0.0.tgz";
+        sha512 = "KGDOARWVga7+rnB3z9Sd2Letx515owfk0hSxHGuqjANb1M+x2bGZGqHLiozPsYMdM2OubeMni/Hpwmjq6qIUhA==";
       };
     };
     "get-assigned-identifiers-1.2.0" = {
@@ -13529,7 +13583,7 @@ let
       packageName = "git-raw-commits";
       version = "1.3.6";
       src = fetchurl {
-        url = "https://registry.npmjs.org/git-raw-commits/-/git-raw-commits-1.3.6.tgz";
+        url = "http://registry.npmjs.org/git-raw-commits/-/git-raw-commits-1.3.6.tgz";
         sha512 = "svsK26tQ8vEKnMshTDatSIQSMDdz8CxIIqKsvPqbtV23Etmw6VNaFAitu8zwZ0VrOne7FztwPyRLxK7/DIUTQg==";
       };
     };
@@ -13569,13 +13623,13 @@ let
         sha1 = "a0c2e3dd392abcf6b76962e27fc75fb3223449ce";
       };
     };
-    "git-semver-tags-2.0.0" = {
+    "git-semver-tags-2.0.2" = {
       name = "git-semver-tags";
       packageName = "git-semver-tags";
-      version = "2.0.0";
+      version = "2.0.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/git-semver-tags/-/git-semver-tags-2.0.0.tgz";
-        sha512 = "lSgFc3zQTul31nFje2Q8XdNcTOI6B4I3mJRPCgFzHQQLfxfqdWTYzdtCaynkK5Xmb2wQlSJoKolhXJ1VhKROnQ==";
+        url = "https://registry.npmjs.org/git-semver-tags/-/git-semver-tags-2.0.2.tgz";
+        sha512 = "34lMF7Yo1xEmsK2EkbArdoU79umpvm0MfzaDkSNYSJqtM5QLAVTPWgpiXSVI5o/O9EvZPSrP4Zvnec/CqhSd5w==";
       };
     };
     "git-ssb-web-2.8.0" = {
@@ -13971,7 +14025,7 @@ let
       packageName = "graceful-fs";
       version = "1.2.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-1.2.3.tgz";
+        url = "http://registry.npmjs.org/graceful-fs/-/graceful-fs-1.2.3.tgz";
         sha1 = "15a4806a57547cb2d2dbf27f42e89a8c3451b364";
       };
     };
@@ -13980,7 +14034,7 @@ let
       packageName = "graceful-fs";
       version = "2.0.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-2.0.3.tgz";
+        url = "http://registry.npmjs.org/graceful-fs/-/graceful-fs-2.0.3.tgz";
         sha1 = "7cd2cdb228a4a3f36e95efa6cc142de7d1a136d0";
       };
     };
@@ -13989,7 +14043,7 @@ let
       packageName = "graceful-fs";
       version = "3.0.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-3.0.11.tgz";
+        url = "http://registry.npmjs.org/graceful-fs/-/graceful-fs-3.0.11.tgz";
         sha1 = "7613c778a1afea62f25c630a086d7f3acbbdd818";
       };
     };
@@ -13998,10 +14052,19 @@ let
       packageName = "graceful-fs";
       version = "4.1.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.1.11.tgz";
+        url = "http://registry.npmjs.org/graceful-fs/-/graceful-fs-4.1.11.tgz";
         sha1 = "0e8bdfe4d1ddb8854d64e04ea7c00e2a026e5658";
       };
     };
+    "graceful-fs-4.1.15" = {
+      name = "graceful-fs";
+      packageName = "graceful-fs";
+      version = "4.1.15";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/graceful-fs/-/graceful-fs-4.1.15.tgz";
+        sha512 = "6uHUhOPEBgQ24HM+r6b/QwWfZq+yiFcipKFrOFiBEnWdy5sdzYoi+pJeQaPI5qOLRFqWmAXUPQNsielzdLoecA==";
+      };
+    };
     "graceful-readlink-1.0.1" = {
       name = "graceful-readlink";
       packageName = "graceful-readlink";
@@ -14056,13 +14119,22 @@ let
         sha512 = "QZ5BL8ZO/B20VA8APauGBg3GyEgZ19eduvpLWoq5x7gMmWnHoy8rlQWPLmWgFvo1yNgjSEFMesmS4R6pPr7xog==";
       };
     };
-    "graphql-anywhere-4.1.19" = {
+    "graphql-14.0.2" = {
+      name = "graphql";
+      packageName = "graphql";
+      version = "14.0.2";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/graphql/-/graphql-14.0.2.tgz";
+        sha512 = "gUC4YYsaiSJT1h40krG3J+USGlwhzNTXSb4IOZljn9ag5Tj+RkoXrWp+Kh7WyE3t1NCfab5kzCuxBIvOMERMXw==";
+      };
+    };
+    "graphql-anywhere-4.1.22" = {
       name = "graphql-anywhere";
       packageName = "graphql-anywhere";
-      version = "4.1.19";
+      version = "4.1.22";
       src = fetchurl {
-        url = "https://registry.npmjs.org/graphql-anywhere/-/graphql-anywhere-4.1.19.tgz";
-        sha512 = "mQlvbECzYPBcgBC9JsdM4v+DSvNmcIP+8Vwr+ij3gktbaLSE0Iza30mztuz40Jlf7ooMs+0emBZucNjLzqz7tA==";
+        url = "https://registry.npmjs.org/graphql-anywhere/-/graphql-anywhere-4.1.22.tgz";
+        sha512 = "qm2/1cKM8nfotxDhm4J0r1znVlK0Yge/yEKt26EVVBgpIhvxjXYFALCGbr7cvfDlvzal1iSPpaYa+8YTtjsxQA==";
       };
     };
     "graphql-cli-prepare-1.4.19" = {
@@ -14083,49 +14155,31 @@ let
         sha512 = "BOtbEOn/fD13jT0peCy3Fzp1DSTsA/1AcZp266AQ5Sk3wFndKCEa/H7donbu5UriOw1V/N1WDirYPnr7rd8E7Q==";
       };
     };
-    "graphql-config-2.0.0" = {
+    "graphql-config-2.2.1" = {
       name = "graphql-config";
       packageName = "graphql-config";
-      version = "2.0.0";
+      version = "2.2.1";
       src = fetchurl {
-        url = "http://registry.npmjs.org/graphql-config/-/graphql-config-2.0.0.tgz";
-        sha512 = "//hZmROEk79zzPlH6SVTQeXd8NVV65rquz1zxZeO6oEuX5KNnii8+oznLu7d897EfJ+NShTZtsY9FMmxxkWmJw==";
+        url = "https://registry.npmjs.org/graphql-config/-/graphql-config-2.2.1.tgz";
+        sha512 = "U8+1IAhw9m6WkZRRcyj8ZarK96R6lQBQ0an4lp76Ps9FyhOXENC5YQOxOFGm5CxPrX2rD0g3Je4zG5xdNJjwzQ==";
       };
     };
-    "graphql-config-2.0.1" = {
-      name = "graphql-config";
-      packageName = "graphql-config";
-      version = "2.0.1";
-      src = fetchurl {
-        url = "http://registry.npmjs.org/graphql-config/-/graphql-config-2.0.1.tgz";
-        sha512 = "eb4FzlODifHE/Q+91QptAmkGw39wL5ToinJ2556UUsGt2drPc4tzifL+HSnHSaxiIbH8EUhc/Fa6+neinF04qA==";
-      };
-    };
-    "graphql-config-extension-graphcool-1.0.8" = {
+    "graphql-config-extension-graphcool-1.0.11" = {
       name = "graphql-config-extension-graphcool";
       packageName = "graphql-config-extension-graphcool";
-      version = "1.0.8";
+      version = "1.0.11";
       src = fetchurl {
-        url = "http://registry.npmjs.org/graphql-config-extension-graphcool/-/graphql-config-extension-graphcool-1.0.8.tgz";
-        sha512 = "eMvL/RAo88EHo8SmP40Zcsrx7nrLTE82G4ZochsHYoEvP+QMo0XA+Vq9lxYeRTJEtGMFD4imjHXGHWh4B0srQw==";
+        url = "https://registry.npmjs.org/graphql-config-extension-graphcool/-/graphql-config-extension-graphcool-1.0.11.tgz";
+        sha512 = "uNhyMqj30M4KLkD/gGEEr6cPuVX/jtm0C9O5Bj9V2jFhN5IdHXWJx+fC/p/xxh82iOuR8uibKNCXzwA7R6F6IA==";
       };
     };
-    "graphql-config-extension-openapi-1.0.6" = {
-      name = "graphql-config-extension-openapi";
-      packageName = "graphql-config-extension-openapi";
-      version = "1.0.6";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/graphql-config-extension-openapi/-/graphql-config-extension-openapi-1.0.6.tgz";
-        sha512 = "Do6tHyQyxaPhaZdJ+ZCpYbVhczlqNqMVuO46aG/YkMuRQPoj/FRmeH9BFXniFkz60TZyRpLTQNel2sllMekRLQ==";
-      };
-    };
-    "graphql-config-extension-prisma-0.2.1" = {
+    "graphql-config-extension-prisma-0.2.5" = {
       name = "graphql-config-extension-prisma";
       packageName = "graphql-config-extension-prisma";
-      version = "0.2.1";
+      version = "0.2.5";
       src = fetchurl {
-        url = "https://registry.npmjs.org/graphql-config-extension-prisma/-/graphql-config-extension-prisma-0.2.1.tgz";
-        sha512 = "OIqa5hjX3bqHR5x2uPE5ssdaI6DEr/P/+utAaqdM6ZEAi8vgupye4AT5AOyDzwK5iDmbJAkShgwQlHiAm4Srvg==";
+        url = "https://registry.npmjs.org/graphql-config-extension-prisma/-/graphql-config-extension-prisma-0.2.5.tgz";
+        sha512 = "7Qh3TzZS3hwZpJbTNfTHXBM6UbzV7DMik9Mc95Rz76yTAs7Wr83xBFsH4Ap1NWlqBgANfO3cLLI4YomDJmO5SA==";
       };
     };
     "graphql-extensions-0.2.1" = {
@@ -14146,22 +14200,31 @@ let
         sha512 = "G/+I08Qp6/QGTb9qapknCm3yPHV0ZL7wbaalWFpxsfR8ZhZoTBe//LsbsCKlbALQpcMegchpJhpTSKiJjhaVqQ==";
       };
     };
-    "graphql-playground-html-1.5.5" = {
-      name = "graphql-playground-html";
-      packageName = "graphql-playground-html";
-      version = "1.5.5";
+    "graphql-import-0.7.1" = {
+      name = "graphql-import";
+      packageName = "graphql-import";
+      version = "0.7.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/graphql-playground-html/-/graphql-playground-html-1.5.5.tgz";
-        sha512 = "PzSywpEKcjbDUkV6e3ivEixvAuUJGyYmBUvuittzySe/RgwHRo0xKLD7HouUCTbpFfWMw8kRKhAUVtt7Ys97uw==";
+        url = "https://registry.npmjs.org/graphql-import/-/graphql-import-0.7.1.tgz";
+        sha512 = "YpwpaPjRUVlw2SN3OPljpWbVRWAhMAyfSba5U47qGMOSsPLi2gYeJtngGpymjm9nk57RFWEpjqwh4+dpYuFAPw==";
       };
     };
-    "graphql-playground-middleware-express-1.6.2" = {
+    "graphql-playground-html-1.6.4" = {
+      name = "graphql-playground-html";
+      packageName = "graphql-playground-html";
+      version = "1.6.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/graphql-playground-html/-/graphql-playground-html-1.6.4.tgz";
+        sha512 = "mnpAVYSR3TesYsJ5OLJVJMA0muTCw4npsCI1cKMtW35lbA6KljZkLkz3ZWXhEIYPnHKIeUHEtbn1ZGkEXtAxLg==";
+      };
+    };
+    "graphql-playground-middleware-express-1.7.6" = {
       name = "graphql-playground-middleware-express";
       packageName = "graphql-playground-middleware-express";
-      version = "1.6.2";
+      version = "1.7.6";
       src = fetchurl {
-        url = "https://registry.npmjs.org/graphql-playground-middleware-express/-/graphql-playground-middleware-express-1.6.2.tgz";
-        sha512 = "BHaEZe2J2lQ1TX2W73a6PI2zVjB9Nb0J9pFdbG1L7ugYdbait/elDrsNMxLCsDHVOGJF009VlYszrk7Cq7FiTg==";
+        url = "https://registry.npmjs.org/graphql-playground-middleware-express/-/graphql-playground-middleware-express-1.7.6.tgz";
+        sha512 = "fICPxYGIdhCxtFlwCnP3uZ2uRWeQ9wj7OkcWUiHNwaFma2TbRD5nNKaPA2u21YWha9xv26qIDxxcdW27F/lcbQ==";
       };
     };
     "graphql-request-1.8.2" = {
@@ -14236,15 +14299,6 @@ let
         sha1 = "d2c177e2f1b17d87f81072cd05311c0754baa420";
       };
     };
-    "graphreduce-3.0.4" = {
-      name = "graphreduce";
-      packageName = "graphreduce";
-      version = "3.0.4";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/graphreduce/-/graphreduce-3.0.4.tgz";
-        sha1 = "bf442d0a878e83901e5ef3e652d23ffb5b831ed7";
-      };
-    };
     "gray-matter-2.1.1" = {
       name = "gray-matter";
       packageName = "gray-matter";
@@ -14754,7 +14808,7 @@ let
       packageName = "hawk";
       version = "0.10.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/hawk/-/hawk-0.10.2.tgz";
+        url = "http://registry.npmjs.org/hawk/-/hawk-0.10.2.tgz";
         sha1 = "9b361dee95a931640e6d504e05609a8fc3ac45d2";
       };
     };
@@ -14763,7 +14817,7 @@ let
       packageName = "hawk";
       version = "3.1.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/hawk/-/hawk-3.1.3.tgz";
+        url = "http://registry.npmjs.org/hawk/-/hawk-3.1.3.tgz";
         sha1 = "078444bd7c1640b0fe540d2c9b73d59678e8e1c4";
       };
     };
@@ -14848,13 +14902,13 @@ let
         sha1 = "b8a9c5493212a9392f0222b649c9611497ebfb88";
       };
     };
-    "highlight.js-9.13.0" = {
+    "highlight.js-9.13.1" = {
       name = "highlight.js";
       packageName = "highlight.js";
-      version = "9.13.0";
+      version = "9.13.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/highlight.js/-/highlight.js-9.13.0.tgz";
-        sha512 = "2B90kcNnErqRTmzdZw6IPLEC9CdsiIMhj+r8L3LJKRCgtEJ+LY5yzWuQCVnADTI0wwocQinFzaaL/JjTQNqI/g==";
+        url = "https://registry.npmjs.org/highlight.js/-/highlight.js-9.13.1.tgz";
+        sha512 = "Sc28JNQNDzaH6PORtRLMvif9RSn1mYuOoX3omVjnb0+HbpPygU2ALBI0R/wsiqCb4/fcp07Gdo8g+fhtFrQl6A==";
       };
     };
     "hiredis-0.4.1" = {
@@ -14880,7 +14934,7 @@ let
       packageName = "hoek";
       version = "0.7.6";
       src = fetchurl {
-        url = "https://registry.npmjs.org/hoek/-/hoek-0.7.6.tgz";
+        url = "http://registry.npmjs.org/hoek/-/hoek-0.7.6.tgz";
         sha1 = "60fbd904557541cd2b8795abf308a1b3770e155a";
       };
     };
@@ -14889,7 +14943,7 @@ let
       packageName = "hoek";
       version = "2.16.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/hoek/-/hoek-2.16.3.tgz";
+        url = "http://registry.npmjs.org/hoek/-/hoek-2.16.3.tgz";
         sha1 = "20bb7403d3cea398e91dc4710a8ff1b8274a25ed";
       };
     };
@@ -14898,7 +14952,7 @@ let
       packageName = "hoek";
       version = "4.2.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/hoek/-/hoek-4.2.1.tgz";
+        url = "http://registry.npmjs.org/hoek/-/hoek-4.2.1.tgz";
         sha512 = "QLg82fGkfnJ/4iy1xZ81/9SIJiq1NGFUMGs6ParyjBZr6jW2Ufj/snDqTHixNlHdPNwN2RLVD0Pi3igeK9+JfA==";
       };
     };
@@ -14911,6 +14965,15 @@ let
         sha512 = "Alr4ZQgoMlnere5FZJsIyfIjORBqZll5POhDsF4q64dPuJR6rNxXdDxtHSQq8OXRurhmx+PWYEE8bXRROY8h0w==";
       };
     };
+    "hoek-6.0.1" = {
+      name = "hoek";
+      packageName = "hoek";
+      version = "6.0.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/hoek/-/hoek-6.0.1.tgz";
+        sha512 = "3PvUwBerLNVJiIVQdpkWF9F/M0ekgb2NPJWOhsE28RXSQPsY42YSnaJ8d1kZjcAz58TZ/Fk9Tw64xJsENFlJNw==";
+      };
+    };
     "hogan.js-3.0.2" = {
       name = "hogan.js";
       packageName = "hogan.js";
@@ -14988,16 +15051,25 @@ let
       packageName = "htmlescape";
       version = "1.1.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/htmlescape/-/htmlescape-1.1.1.tgz";
+        url = "http://registry.npmjs.org/htmlescape/-/htmlescape-1.1.1.tgz";
         sha1 = "3a03edc2214bca3b66424a3e7959349509cb0351";
       };
     };
+    "htmlparser2-3.10.0" = {
+      name = "htmlparser2";
+      packageName = "htmlparser2";
+      version = "3.10.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/htmlparser2/-/htmlparser2-3.10.0.tgz";
+        sha512 = "J1nEUGv+MkXS0weHNWVKJJ+UrLfePxRWpN3C9bEi9fLxL2+ggW94DQvgYVXsaT30PGwYRIZKNZXuyMhp3Di4bQ==";
+      };
+    };
     "htmlparser2-3.7.3" = {
       name = "htmlparser2";
       packageName = "htmlparser2";
       version = "3.7.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/htmlparser2/-/htmlparser2-3.7.3.tgz";
+        url = "http://registry.npmjs.org/htmlparser2/-/htmlparser2-3.7.3.tgz";
         sha1 = "6a64c77637c08c6f30ec2a8157a53333be7cb05e";
       };
     };
@@ -15006,19 +15078,10 @@ let
       packageName = "htmlparser2";
       version = "3.8.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/htmlparser2/-/htmlparser2-3.8.3.tgz";
+        url = "http://registry.npmjs.org/htmlparser2/-/htmlparser2-3.8.3.tgz";
         sha1 = "996c28b191516a8be86501a7d79757e5c70c1068";
       };
     };
-    "htmlparser2-3.9.2" = {
-      name = "htmlparser2";
-      packageName = "htmlparser2";
-      version = "3.9.2";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/htmlparser2/-/htmlparser2-3.9.2.tgz";
-        sha1 = "1bdf87acca0f3f9e53fa4fcceb0f4b4cbb00b338";
-      };
-    };
     "http-auth-2.0.7" = {
       name = "http-auth";
       packageName = "http-auth";
@@ -15064,15 +15127,6 @@ let
         sha1 = "197e22cdebd4198585e8694ef6786197b91ed942";
       };
     };
-    "http-errors-1.6.2" = {
-      name = "http-errors";
-      packageName = "http-errors";
-      version = "1.6.2";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/http-errors/-/http-errors-1.6.2.tgz";
-        sha1 = "0a002cc85707192a7e7946ceedc11155f60ec736";
-      };
-    };
     "http-errors-1.6.3" = {
       name = "http-errors";
       packageName = "http-errors";
@@ -15109,13 +15163,13 @@ let
         sha1 = "29691b6fc58f4f7e81a3605dca82682b068e4430";
       };
     };
-    "http-parser-js-0.4.13" = {
+    "http-parser-js-0.5.0" = {
       name = "http-parser-js";
       packageName = "http-parser-js";
-      version = "0.4.13";
+      version = "0.5.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/http-parser-js/-/http-parser-js-0.4.13.tgz";
-        sha1 = "3bd6d6fde6e3172c9334c3b33b6c193d80fe1137";
+        url = "https://registry.npmjs.org/http-parser-js/-/http-parser-js-0.5.0.tgz";
+        sha512 = "cZdEF7r4gfRIq7ezX9J0T+kQmJNOub71dWbgAXVHDct80TKP4MCETtZQ31xyv38UwgzkWPYF/Xc0ge55dW9Z9w==";
       };
     };
     "http-proxy-1.0.2" = {
@@ -15123,7 +15177,7 @@ let
       packageName = "http-proxy";
       version = "1.0.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/http-proxy/-/http-proxy-1.0.2.tgz";
+        url = "http://registry.npmjs.org/http-proxy/-/http-proxy-1.0.2.tgz";
         sha1 = "08060ff2edb2189e57aa3a152d3ac63ed1af7254";
       };
     };
@@ -15258,7 +15312,7 @@ let
       packageName = "humanize-plus";
       version = "1.8.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/humanize-plus/-/humanize-plus-1.8.2.tgz";
+        url = "http://registry.npmjs.org/humanize-plus/-/humanize-plus-1.8.2.tgz";
         sha1 = "a65b34459ad6367adbb3707a82a3c9f916167030";
       };
     };
@@ -15379,15 +15433,6 @@ let
         sha1 = "fe265a218ac6a57cfe854927e9d04c19825eddeb";
       };
     };
-    "iconv-lite-0.4.19" = {
-      name = "iconv-lite";
-      packageName = "iconv-lite";
-      version = "0.4.19";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/iconv-lite/-/iconv-lite-0.4.19.tgz";
-        sha512 = "oTZqweIP51xaGPI4uPa56/Pri/480R+mo7SeU+YETByQNhDG55ycFyNLIgta9vXhILrxXDmF7ZGhqZIcuN0gJQ==";
-      };
-    };
     "iconv-lite-0.4.23" = {
       name = "iconv-lite";
       packageName = "iconv-lite";
@@ -15460,13 +15505,13 @@ let
         sha512 = "cyFDKrqc/YdcWFniJhzI42+AzS+gNwmUzOSFcRCQYwySuBBBy/KjuxWLZ/FHEH6Moq1NizMOBWyTcv8O4OZIMg==";
       };
     };
-    "ignore-5.0.2" = {
+    "ignore-5.0.4" = {
       name = "ignore";
       packageName = "ignore";
-      version = "5.0.2";
+      version = "5.0.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/ignore/-/ignore-5.0.2.tgz";
-        sha512 = "ilxkgh36cTqJxlipxQdCOxkbQae5dIeCwo5fSw6pBDW8m8GiMTnadClKST2+aATqjs9BTHsi0IqOsTp0jiihAw==";
+        url = "https://registry.npmjs.org/ignore/-/ignore-5.0.4.tgz";
+        sha512 = "WLsTMEhsQuXpCiG173+f3aymI43SXa+fB1rSfbzyP4GkPP+ZFVuO0/3sFUGNBtifisPeDcl/uD/Y2NxZ7xFq4g==";
       };
     };
     "ignore-by-default-1.0.1" = {
@@ -15532,13 +15577,13 @@ let
         sha512 = "5s6NiCGbtWc+OQA60jrre54w12U7tynIyUNjO5LJjNA5lWwvCv6640roq8Wk/wIuaqnd4Pgtp453OyJ7hbONkQ==";
       };
     };
-    "immutable-tuple-0.4.8" = {
+    "immutable-tuple-0.4.9" = {
       name = "immutable-tuple";
       packageName = "immutable-tuple";
-      version = "0.4.8";
+      version = "0.4.9";
       src = fetchurl {
-        url = "https://registry.npmjs.org/immutable-tuple/-/immutable-tuple-0.4.8.tgz";
-        sha512 = "1m29EVSrF+LJJAyVo1v12NsIalVKjyi4HNQVQDBx+LNCIuRXnfeMCHuLao5CyN1m3Sn0T63U5JEkmPArPCipQA==";
+        url = "https://registry.npmjs.org/immutable-tuple/-/immutable-tuple-0.4.9.tgz";
+        sha512 = "LWbJPZnidF8eczu7XmcnLBsumuyRBkpwIRPCZxlojouhBo5jEBO4toj6n7hMy6IxHU/c+MqDSWkvaTpPlMQcyA==";
       };
     };
     "import-global-0.1.0" = {
@@ -15892,6 +15937,15 @@ let
         sha1 = "332650e10854d8c0ac58c192bdc27a8bf7e7a30c";
       };
     };
+    "into-stream-2.0.1" = {
+      name = "into-stream";
+      packageName = "into-stream";
+      version = "2.0.1";
+      src = fetchurl {
+        url = "http://registry.npmjs.org/into-stream/-/into-stream-2.0.1.tgz";
+        sha1 = "db9b003694453eae091d8a5c84cc11507b781d31";
+      };
+    };
     "into-stream-3.1.0" = {
       name = "into-stream";
       packageName = "into-stream";
@@ -15928,15 +15982,6 @@ let
         sha512 = "wPVv/y/QQ/Uiirj/vh3oP+1Ww+AWehmi1g5fFWGPF6IpCBCDVrhgHRMvrLfdYcwDh3QJbGXDW4JAuzxElLSqKA==";
       };
     };
-    "ip-0.3.3" = {
-      name = "ip";
-      packageName = "ip";
-      version = "0.3.3";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/ip/-/ip-0.3.3.tgz";
-        sha1 = "8ee8309e92f0b040d287f72efaca1a21702d3fb4";
-      };
-    };
     "ip-1.1.5" = {
       name = "ip";
       packageName = "ip";
@@ -15973,15 +16018,6 @@ let
         sha1 = "5fa78cf301b825c78abc3042d812723049ea23c7";
       };
     };
-    "ipaddr.js-1.4.0" = {
-      name = "ipaddr.js";
-      packageName = "ipaddr.js";
-      version = "1.4.0";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/ipaddr.js/-/ipaddr.js-1.4.0.tgz";
-        sha1 = "296aca878a821816e5b85d0a285a99bcff4582f0";
-      };
-    };
     "ipaddr.js-1.8.0" = {
       name = "ipaddr.js";
       packageName = "ipaddr.js";
@@ -16090,13 +16126,13 @@ let
         sha512 = "pyfU/0kHdISIgslFfZN9nfY1Gk3MquQgUm1mJTjdkEPpkAKNWuBTSqFwewOpR7N351VkErCiyV71zX7mlQQqsg==";
       };
     };
-    "is-arguments-1.0.2" = {
+    "is-arguments-1.0.3" = {
       name = "is-arguments";
       packageName = "is-arguments";
-      version = "1.0.2";
+      version = "1.0.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/is-arguments/-/is-arguments-1.0.2.tgz";
-        sha1 = "07e30ad79531844179b642d2d8399435182c8727";
+        url = "https://registry.npmjs.org/is-arguments/-/is-arguments-1.0.3.tgz";
+        sha512 = "k6M8JiBbDIzI/ewhfcfQgaR3+H+W9PkEqgFPW6P1dNZDOWrma1DbrBJk5Wm2eTrrzTFHJeviMRvuelM6TBbBEw==";
       };
     };
     "is-arrayish-0.2.1" = {
@@ -16162,6 +16198,15 @@ let
         sha512 = "r5p9sxJjYnArLjObpjA4xu5EKI3CuKHkJXMhT7kwbpUyIFD1n5PMAsoPvWnvtZiNz7LjkYDRZhd7FlI0eMijEA==";
       };
     };
+    "is-canonical-base64-1.1.1" = {
+      name = "is-canonical-base64";
+      packageName = "is-canonical-base64";
+      version = "1.1.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/is-canonical-base64/-/is-canonical-base64-1.1.1.tgz";
+        sha512 = "o6t/DwgEapC0bsloqtegAQyZzQXaQ5+8fzsyf2KmLqupC2ifLFq/lMQiFCJeGpdSrK1o6GL+WW2lRU050lLlFg==";
+      };
+    };
     "is-ci-1.2.1" = {
       name = "is-ci";
       packageName = "is-ci";
@@ -16252,13 +16297,13 @@ let
         sha1 = "a6a2f32ffd2dfb04f5ca25ecd0f6b83cf798a1e1";
       };
     };
-    "is-electron-2.1.0" = {
+    "is-electron-2.2.0" = {
       name = "is-electron";
       packageName = "is-electron";
-      version = "2.1.0";
+      version = "2.2.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/is-electron/-/is-electron-2.1.0.tgz";
-        sha512 = "dkg5xT383+M6zIbbXW/z7n2nz4SFUi2OSyhntnFYkRdtV+HVEfdjEK+5AWisfYgkpe3WYjTIuh7toaKmSfFVWw==";
+        url = "https://registry.npmjs.org/is-electron/-/is-electron-2.2.0.tgz";
+        sha512 = "SpMppC2XR3YdxSzczXReBjqs2zGscWQpBIKqwXYBFic0ERaxNVgwLCHwOLZeESfdJQjX0RDvrJ1lBXX2ij+G1Q==";
       };
     };
     "is-equal-shallow-0.1.3" = {
@@ -16945,13 +16990,13 @@ let
         sha512 = "8cJBL5tTd2OS0dM4jz07wQd5g0dCCqIhUxPIGtZfa5L6hWlvV5MHTITy/DBAsF+Oe2LS1X3krBUhNwaGUWpWxw==";
       };
     };
-    "isemail-3.1.3" = {
+    "isemail-3.2.0" = {
       name = "isemail";
       packageName = "isemail";
-      version = "3.1.3";
+      version = "3.2.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/isemail/-/isemail-3.1.3.tgz";
-        sha512 = "5xbsG5wYADIcB+mfLsd+nst1V/D+I7EU7LEZPo2GOIMu4JzfcRs5yQoypP4avA7QtUqgxYLKBYNv4IdzBmbhdw==";
+        url = "https://registry.npmjs.org/isemail/-/isemail-3.2.0.tgz";
+        sha512 = "zKqkK+O+dGqevc93KNsbZ/TqTUFd46MwWjYOoMrjIMZ51eU7DtQG3Wmd9SQQT7i7RVnuTPEiYEWHU3MSbxC1Tg==";
       };
     };
     "isexe-1.1.2" = {
@@ -17941,7 +17986,7 @@ let
       packageName = "kew";
       version = "0.1.7";
       src = fetchurl {
-        url = "https://registry.npmjs.org/kew/-/kew-0.1.7.tgz";
+        url = "http://registry.npmjs.org/kew/-/kew-0.1.7.tgz";
         sha1 = "0a32a817ff1a9b3b12b8c9bacf4bc4d679af8e72";
       };
     };
@@ -17950,7 +17995,7 @@ let
       packageName = "kew";
       version = "0.7.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/kew/-/kew-0.7.0.tgz";
+        url = "http://registry.npmjs.org/kew/-/kew-0.7.0.tgz";
         sha1 = "79d93d2d33363d6fdd2970b335d9141ad591d79b";
       };
     };
@@ -18287,6 +18332,15 @@ let
         sha512 = "2qYbbiptPsPWGUI+AgB1gTNXqIjPpALRqrQyNx1zWYNZxhhuzEj/IE4Unu9weEBnsUEocfYe56xOGlAceb8/Fg==";
       };
     };
+    "level-4.0.0" = {
+      name = "level";
+      packageName = "level";
+      version = "4.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/level/-/level-4.0.0.tgz";
+        sha512 = "4epzCOlEcJ529NOdlAYiuiakS/kZTDdiKSBNJmE1B8bsmA+zEVwcpxyH86qJSQTpOu7SODrlaD9WgPRHLkGutA==";
+      };
+    };
     "level-codec-6.2.0" = {
       name = "level-codec";
       packageName = "level-codec";
@@ -18305,6 +18359,15 @@ let
         sha512 = "gNZlo1HRHz0BWxzGCyNf7xntAs2HKOPvvRBWtXsoDvEX4vMYnSTBS6ZnxoaiX7nhxSBPpegRa8CQ/hnfGBKk3Q==";
       };
     };
+    "level-codec-9.0.0" = {
+      name = "level-codec";
+      packageName = "level-codec";
+      version = "9.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/level-codec/-/level-codec-9.0.0.tgz";
+        sha512 = "OIpVvjCcZNP5SdhcNupnsI1zo5Y9Vpm+k/F1gfG5kXrtctlrwanisakweJtE0uA0OpLukRfOQae+Fg0M5Debhg==";
+      };
+    };
     "level-errors-1.1.2" = {
       name = "level-errors";
       packageName = "level-errors";
@@ -18314,6 +18377,15 @@ let
         sha512 = "Sw/IJwWbPKF5Ai4Wz60B52yj0zYeqzObLh8k1Tk88jVmD51cJSKWSYpRyhVIvFzZdvsPqlH5wfhp/yxdsaQH4w==";
       };
     };
+    "level-errors-2.0.0" = {
+      name = "level-errors";
+      packageName = "level-errors";
+      version = "2.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/level-errors/-/level-errors-2.0.0.tgz";
+        sha512 = "AmY4HCp9h3OiU19uG+3YWkdELgy05OTP/r23aNHaQKWv8DO787yZgsEuGVkoph40uwN+YdUKnANlrxSsoOaaxg==";
+      };
+    };
     "level-iterator-stream-2.0.3" = {
       name = "level-iterator-stream";
       packageName = "level-iterator-stream";
@@ -18323,6 +18395,15 @@ let
         sha512 = "I6Heg70nfF+e5Y3/qfthJFexhRw/Gi3bIymCoXAlijZdAcLaPuWSJs3KXyTYf23ID6g0o2QF62Yh+grOXY3Rig==";
       };
     };
+    "level-iterator-stream-3.0.1" = {
+      name = "level-iterator-stream";
+      packageName = "level-iterator-stream";
+      version = "3.0.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/level-iterator-stream/-/level-iterator-stream-3.0.1.tgz";
+        sha512 = "nEIQvxEED9yRThxvOrq8Aqziy4EGzrxSZK+QzEFAVuJvQ8glfyZ96GB6BoI4sBbLfjMXm2w4vu3Tkcm9obcY0g==";
+      };
+    };
     "level-packager-0.18.0" = {
       name = "level-packager";
       packageName = "level-packager";
@@ -18341,6 +18422,15 @@ let
         sha512 = "6l3G6dVkmdvHwOJrEA9d9hL6SSFrzwjQoLP8HsvohOgfY/8Z9LyTKNCM5Gc84wtsUWCuIHu6r+S6WrCtTWUJCw==";
       };
     };
+    "level-packager-3.1.0" = {
+      name = "level-packager";
+      packageName = "level-packager";
+      version = "3.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/level-packager/-/level-packager-3.1.0.tgz";
+        sha512 = "UxVEfK5WH0u0InR3WxTCSAroiorAGKzXWZT6i+nBjambmvINuXFUsFx2Ai3UIjUUtnyWhluv42jMlzUZCsAk9A==";
+      };
+    };
     "level-post-1.0.7" = {
       name = "level-post";
       packageName = "level-post";
@@ -18377,6 +18467,15 @@ let
         sha512 = "+ANRScj1npQQzv6e4DYAKRjVQZZ+ahMoubKrNP68nIq+l9bYgb+WiXF+14oTcQTg2f7qE9WHGW7rBG9nGSsA+A==";
       };
     };
+    "leveldown-4.0.1" = {
+      name = "leveldown";
+      packageName = "leveldown";
+      version = "4.0.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/leveldown/-/leveldown-4.0.1.tgz";
+        sha512 = "ZlBKVSsglPIPJnz4ggB8o2R0bxDxbsMzuQohbfgoFMVApyTE118DK5LNRG0cRju6rt3OkGxe0V6UYACGlq/byg==";
+      };
+    };
     "levelup-0.18.6" = {
       name = "levelup";
       packageName = "levelup";
@@ -18404,6 +18503,15 @@ let
         sha512 = "us+nTLUyd/eLnclYYddOCdAVw1hnymGx/9p4Jr5ThohStsjLqMVmbYiz6/SYFZEPXNF+AKQSvh6fA2e2KZpC8w==";
       };
     };
+    "levelup-3.1.1" = {
+      name = "levelup";
+      packageName = "levelup";
+      version = "3.1.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/levelup/-/levelup-3.1.1.tgz";
+        sha512 = "9N10xRkUU4dShSRRFTBdNaBxofz+PGaIZO962ckboJZiNmLuhVT6FZ6ZKAsICKfUBO76ySaYU6fJWX/jnj3Lcg==";
+      };
+    };
     "leven-1.0.2" = {
       name = "leven";
       packageName = "leven";
@@ -18566,6 +18674,15 @@ let
         sha1 = "d94a4648f9b1c179d64fa97291268bdb6ce9434f";
       };
     };
+    "listenercount-1.0.1" = {
+      name = "listenercount";
+      packageName = "listenercount";
+      version = "1.0.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/listenercount/-/listenercount-1.0.1.tgz";
+        sha1 = "84c8a72ab59c4725321480c975e6508342e70937";
+      };
+    };
     "listify-1.0.0" = {
       name = "listify";
       packageName = "listify";
@@ -20258,13 +20375,13 @@ let
         sha1 = "632b127c3ae5d6ad9e21cfdd9691b63b8944fcd2";
       };
     };
-    "map-filter-reduce-3.2.1" = {
+    "map-filter-reduce-3.2.2" = {
       name = "map-filter-reduce";
       packageName = "map-filter-reduce";
-      version = "3.2.1";
+      version = "3.2.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/map-filter-reduce/-/map-filter-reduce-3.2.1.tgz";
-        sha512 = "0+0C/3IVCX8PLXRyBL0umF/YMy3/ch7Zgxu91ZUIXS6YHyv4UVMZlkclUk9rQI63FQ+uvBdHYzo8VPJbIxKTVw==";
+        url = "https://registry.npmjs.org/map-filter-reduce/-/map-filter-reduce-3.2.2.tgz";
+        sha512 = "p+NIGQbEBxlw/qWwG+NME98G/9kjOQI70hmaH8QEZtIWfTmfMYLKQW4PJChP4izPHNAxlOfv/qefP0+2ZXn84A==";
       };
     };
     "map-merge-1.1.0" = {
@@ -20497,7 +20614,7 @@ let
       packageName = "media-typer";
       version = "0.3.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/media-typer/-/media-typer-0.3.0.tgz";
+        url = "http://registry.npmjs.org/media-typer/-/media-typer-0.3.0.tgz";
         sha1 = "8710d7af0aa626f8fffa1ce00168545263255748";
       };
     };
@@ -20641,7 +20758,7 @@ let
       packageName = "meow";
       version = "3.7.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/meow/-/meow-3.7.0.tgz";
+        url = "http://registry.npmjs.org/meow/-/meow-3.7.0.tgz";
         sha1 = "72cb668b425228290abbfa856892587308a801fb";
       };
     };
@@ -20663,13 +20780,13 @@ let
         sha512 = "CbTqYU17ABaLefO8vCU153ZZlprKYWDljcndKKDCFcYQITzWCXZAVk4QMFZPgvzrnUQ3uItnIE/LoUOwrT15Ig==";
       };
     };
-    "merge-1.2.0" = {
+    "merge-1.2.1" = {
       name = "merge";
       packageName = "merge";
-      version = "1.2.0";
+      version = "1.2.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/merge/-/merge-1.2.0.tgz";
-        sha1 = "7531e39d4949c281a66b8c5a6e0265e8b05894da";
+        url = "https://registry.npmjs.org/merge/-/merge-1.2.1.tgz";
+        sha512 = "VjFo4P5Whtj4vsLzsYBu5ayHhoHJ0UqNm7ibvShmbmoz7tGi0vXaoJbGdB+GmDMLUdg8DpQXEIeVDAe8MaABvQ==";
       };
     };
     "merge-descriptors-0.0.2" = {
@@ -20884,7 +21001,7 @@ let
       packageName = "mime-db";
       version = "1.12.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/mime-db/-/mime-db-1.12.0.tgz";
+        url = "http://registry.npmjs.org/mime-db/-/mime-db-1.12.0.tgz";
         sha1 = "3d0c63180f458eb10d325aaa37d7c58ae312e9d7";
       };
     };
@@ -20893,17 +21010,17 @@ let
       packageName = "mime-db";
       version = "1.33.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/mime-db/-/mime-db-1.33.0.tgz";
+        url = "http://registry.npmjs.org/mime-db/-/mime-db-1.33.0.tgz";
         sha512 = "BHJ/EKruNIqJf/QahvxwQZXKygOQ256myeN/Ew+THcAa5q+PjyTTMMeNQC4DZw5AwfvelsUrA6B67NKMqXDbzQ==";
       };
     };
-    "mime-db-1.36.0" = {
+    "mime-db-1.37.0" = {
       name = "mime-db";
       packageName = "mime-db";
-      version = "1.36.0";
+      version = "1.37.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/mime-db/-/mime-db-1.36.0.tgz";
-        sha512 = "L+xvyD9MkoYMXb1jAmzI/lWYAxAMCPvIBSWur0PZ5nOf5euahRLVqH//FKW9mWp2lkqUgYiXPgkzfMUFi4zVDw==";
+        url = "https://registry.npmjs.org/mime-db/-/mime-db-1.37.0.tgz";
+        sha512 = "R3C4db6bgQhlIhPU48fUtdVmKnflq+hRdad7IyKhtFj06VPNVdk2RhiYL3UjQIlso8L+YxAtFkobT0VK+S/ybg==";
       };
     };
     "mime-types-2.0.14" = {
@@ -20911,7 +21028,7 @@ let
       packageName = "mime-types";
       version = "2.0.14";
       src = fetchurl {
-        url = "https://registry.npmjs.org/mime-types/-/mime-types-2.0.14.tgz";
+        url = "http://registry.npmjs.org/mime-types/-/mime-types-2.0.14.tgz";
         sha1 = "310e159db23e077f8bb22b748dabfa4957140aa6";
       };
     };
@@ -20920,17 +21037,17 @@ let
       packageName = "mime-types";
       version = "2.1.18";
       src = fetchurl {
-        url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.18.tgz";
+        url = "http://registry.npmjs.org/mime-types/-/mime-types-2.1.18.tgz";
         sha512 = "lc/aahn+t4/SWV/qcmumYjymLsWfN3ELhpmVuUFjgsORruuZPVSwAQryq+HHGvO/SI2KVX26bx+En+zhM8g8hQ==";
       };
     };
-    "mime-types-2.1.20" = {
+    "mime-types-2.1.21" = {
       name = "mime-types";
       packageName = "mime-types";
-      version = "2.1.20";
+      version = "2.1.21";
       src = fetchurl {
-        url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.20.tgz";
-        sha512 = "HrkrPaP9vGuWbLK1B1FfgAkbqNjIuy4eHlIYnFi7kamZyLLrGlo2mpcx0bBmNpKqBtYtAfGbodDddIgddSJC2A==";
+        url = "https://registry.npmjs.org/mime-types/-/mime-types-2.1.21.tgz";
+        sha512 = "3iL6DbwpyLzjR3xHSFNFeb9Nz/M8WDkX33t1GFQnFOllWk8pOrh/LSrB5OXlnlW5P9LH73X6loW/eogc+F5lJg==";
       };
     };
     "mimelib-0.3.1" = {
@@ -21086,13 +21203,13 @@ let
         sha512 = "FyBrT/d0d4+uiZRbqznPXqw3IpZZG3gl3wKWiX784FycUKVwBt0uLBFkQrtE4tZOrgo78nZp2jnKz3L65T5LdQ==";
       };
     };
-    "minipass-2.3.4" = {
+    "minipass-2.3.5" = {
       name = "minipass";
       packageName = "minipass";
-      version = "2.3.4";
+      version = "2.3.5";
       src = fetchurl {
-        url = "https://registry.npmjs.org/minipass/-/minipass-2.3.4.tgz";
-        sha512 = "mlouk1OHlaUE8Odt1drMtG1bAJA4ZA6B/ehysgV0LUIrDHdKgo1KorZq3pK0b/7Z7LJIQ12MNM6aC+Tn6lUZ5w==";
+        url = "https://registry.npmjs.org/minipass/-/minipass-2.3.5.tgz";
+        sha512 = "Gi1W4k059gyRbyVUZQ4mEqLm0YIUiGYfvxhF6SIlk3ui1WVxMTGfGdQ2SInh3PDrRTVvPKgULkpJtT4RH10+VA==";
       };
     };
     "minizlib-1.1.1" = {
@@ -21302,13 +21419,13 @@ let
         sha1 = "359a19ec634cda3c706c8709adda54c0329aaec4";
       };
     };
-    "moment-timezone-0.5.21" = {
+    "moment-timezone-0.5.23" = {
       name = "moment-timezone";
       packageName = "moment-timezone";
-      version = "0.5.21";
+      version = "0.5.23";
       src = fetchurl {
-        url = "https://registry.npmjs.org/moment-timezone/-/moment-timezone-0.5.21.tgz";
-        sha512 = "j96bAh4otsgj3lKydm3K7kdtA3iKf2m6MY2iSYCzCm5a1zmHo1g+aK3068dDEeocLZQIS9kU8bsdQHLqEvgW0A==";
+        url = "https://registry.npmjs.org/moment-timezone/-/moment-timezone-0.5.23.tgz";
+        sha512 = "WHFH85DkCfiNMDX5D3X7hpNH3/PUhjTGcD0U1SgfBGZxJ3qUmJh5FdvaFjcClxOvB3rzdfj4oRffbI38jEnC1w==";
       };
     };
     "mongodb-1.2.14" = {
@@ -21347,6 +21464,15 @@ let
         sha1 = "5ba5adc7aac85e1d7ce77be847161ed246b39603";
       };
     };
+    "moo-0.4.3" = {
+      name = "moo";
+      packageName = "moo";
+      version = "0.4.3";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/moo/-/moo-0.4.3.tgz";
+        sha512 = "gFD2xGCl8YFgGHsqJ9NKRVdwlioeW3mI1iqfLNYQOv0+6JRwG58Zk9DIGQgyIaffSYaO1xsKnMaYzzNr1KyIAw==";
+      };
+    };
     "mooremachine-2.2.1" = {
       name = "mooremachine";
       packageName = "mooremachine";
@@ -21572,15 +21698,6 @@ let
         sha512 = "6HuCZHA57WtNUzrKIvjJ8OMxigzveJ6D5i13y6TsgGu3X3zxABpuBvChpppOoGdB9SyWZcmqUs1fwUV/PpSQ7Q==";
       };
     };
-    "multer-1.3.1" = {
-      name = "multer";
-      packageName = "multer";
-      version = "1.3.1";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/multer/-/multer-1.3.1.tgz";
-        sha512 = "JHdEoxkA/5NgZRo91RNn4UT+HdcJV9XUo01DTkKC7vo1erNIngtuaw9Y0WI8RdTlyi+wMIbunflhghzVLuGJyw==";
-      };
-    };
     "multer-1.4.1" = {
       name = "multer";
       packageName = "multer";
@@ -21707,13 +21824,22 @@ let
         sha1 = "2a8f2ddf70eed564dff2d57f1e1a137d9f05078b";
       };
     };
-    "multiserver-1.13.5" = {
+    "multiserver-1.13.7" = {
       name = "multiserver";
       packageName = "multiserver";
-      version = "1.13.5";
+      version = "1.13.7";
       src = fetchurl {
-        url = "https://registry.npmjs.org/multiserver/-/multiserver-1.13.5.tgz";
-        sha512 = "1bxts3gFkHKJsGAaWR9D4nFLVH995eiEt38n/jPf1dni/FI0o6PH3hlar3ge/bMs58FX/T+DzrGNXZhEkMVFqA==";
+        url = "https://registry.npmjs.org/multiserver/-/multiserver-1.13.7.tgz";
+        sha512 = "nQKAe6+u7nWJY29pJjegltw0ROj2bDc2bCTm9Bnr4EQrp5H5Tav+ESUjgl3D4vuQgCeveb4h+CtLtjB8QnK1Dw==";
+      };
+    };
+    "multiserver-address-1.0.1" = {
+      name = "multiserver-address";
+      packageName = "multiserver-address";
+      version = "1.0.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/multiserver-address/-/multiserver-address-1.0.1.tgz";
+        sha512 = "IfZMAGs9onCLkYNSnNBri3JxuvhQYllMyh3W9ry86iEDcfW9uPVsHTHDsjDxQtL+dPq3byshmA+Y4LN2wLHwNw==";
       };
     };
     "multistream-2.1.1" = {
@@ -21941,22 +22067,31 @@ let
         sha1 = "4f3152e09540fde28c76f44b19bbcd1d5a42478d";
       };
     };
-    "nanobus-4.3.4" = {
+    "nanobus-4.3.5" = {
       name = "nanobus";
       packageName = "nanobus";
-      version = "4.3.4";
+      version = "4.3.5";
       src = fetchurl {
-        url = "https://registry.npmjs.org/nanobus/-/nanobus-4.3.4.tgz";
-        sha512 = "N1IBreECNaxmsaOLMqqm01K7XIp+sMvoVX8mvmT/p1VjM2FLcBU0lj0FalKooi2/2i+ph9WsEoEogOJevqQ6LQ==";
+        url = "https://registry.npmjs.org/nanobus/-/nanobus-4.3.5.tgz";
+        sha512 = "6UlqagLV9/ADqcTU60mipAPEd16WDbO+a9WeeGVn9RucHKNDTcPt9MOf8ZmAvbA3V2CV+EJS28eupNalg4YF8Q==";
       };
     };
-    "nanoid-1.3.0" = {
+    "nanoid-1.3.4" = {
       name = "nanoid";
       packageName = "nanoid";
-      version = "1.3.0";
+      version = "1.3.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/nanoid/-/nanoid-1.3.0.tgz";
-        sha512 = "OP8SoC91Kyjl1sdSTEnM1xYh4gUEOSkUl6wRBUklWOPyfPRbeJbhvdhQYXEjVtZ1LI9amVMkIWQI2nO8O7DL9A==";
+        url = "https://registry.npmjs.org/nanoid/-/nanoid-1.3.4.tgz";
+        sha512 = "4ug4BsuHxiVHoRUe1ud6rUFT3WUMmjXt1W0quL0CviZQANdan7D8kqN5/maw53hmAApY/jfzMRkC57BNNs60ZQ==";
+      };
+    };
+    "nanoid-2.0.0" = {
+      name = "nanoid";
+      packageName = "nanoid";
+      version = "2.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/nanoid/-/nanoid-2.0.0.tgz";
+        sha512 = "SG2qscLE3iM4C0CNzGrsAojJHSVHMS1J8NnvJ31P1lH8P0hGHOiafmniNJz6w6q7vuoDlV7RdySlJgtqkFEVtQ==";
       };
     };
     "nanolru-1.0.0" = {
@@ -22143,6 +22278,24 @@ let
         sha1 = "ae603b36b134bcec347b452422b0bf98d5832ec8";
       };
     };
+    "nearley-2.15.1" = {
+      name = "nearley";
+      packageName = "nearley";
+      version = "2.15.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/nearley/-/nearley-2.15.1.tgz";
+        sha512 = "8IUY/rUrKz2mIynUGh8k+tul1awMKEjeHHC5G3FHvvyAW6oq4mQfNp2c0BMea+sYZJvYcrrM6GmZVIle/GRXGw==";
+      };
+    };
+    "neat-csv-2.1.0" = {
+      name = "neat-csv";
+      packageName = "neat-csv";
+      version = "2.1.0";
+      src = fetchurl {
+        url = "http://registry.npmjs.org/neat-csv/-/neat-csv-2.1.0.tgz";
+        sha1 = "06f58360c4c3b955bd467ddc85ae4511a3907a4c";
+      };
+    };
     "neat-input-1.8.0" = {
       name = "neat-input";
       packageName = "neat-input";
@@ -22338,7 +22491,7 @@ let
       packageName = "next-tick";
       version = "1.0.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/next-tick/-/next-tick-1.0.0.tgz";
+        url = "http://registry.npmjs.org/next-tick/-/next-tick-1.0.0.tgz";
         sha1 = "ca86d1fe8828169b0120208e3dc8424b9db8342c";
       };
     };
@@ -22369,13 +22522,13 @@ let
         sha512 = "rmTZ9kz+f3rCvK2TD1Ue/oZlns7OGoIWP4fc3llxxRXlOkHKoWPPWJOfFYpITabSow43QJbRIoHQXtt10VldyQ==";
       };
     };
-    "node-abi-2.4.5" = {
+    "node-abi-2.5.0" = {
       name = "node-abi";
       packageName = "node-abi";
-      version = "2.4.5";
+      version = "2.5.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/node-abi/-/node-abi-2.4.5.tgz";
-        sha512 = "aa/UC6Nr3+tqhHGRsAuw/edz7/q9nnetBrKWxj6rpTtm+0X9T1qU7lIEHMS3yN9JwAbRiKUbRRFy1PLz/y3aaA==";
+        url = "https://registry.npmjs.org/node-abi/-/node-abi-2.5.0.tgz";
+        sha512 = "9g2twBGSP6wIR5PW7tXvAWnEWKJDH/VskdXp168xsw9VVxpEGov8K4jsP4/VeoC7b2ZAyzckvMCuQuQlw44lXg==";
       };
     };
     "node-alias-1.0.4" = {
@@ -22387,13 +22540,13 @@ let
         sha1 = "1f1b916b56b9ea241c0135f97ced6940f556f292";
       };
     };
-    "node-appc-0.2.48" = {
+    "node-appc-0.2.49" = {
       name = "node-appc";
       packageName = "node-appc";
-      version = "0.2.48";
+      version = "0.2.49";
       src = fetchurl {
-        url = "https://registry.npmjs.org/node-appc/-/node-appc-0.2.48.tgz";
-        sha512 = "fKPynW61a+PmqssitvJXxN2FZAN/w4eBvmE5zqJXl+eDfOip/b26y7SIGGJOn23KjAYX2uyl2Oy/+qTaRz/gHQ==";
+        url = "https://registry.npmjs.org/node-appc/-/node-appc-0.2.49.tgz";
+        sha512 = "PldEN7CgEy7ekSZyomgpajLX7STCZPDJI6rGy7FCbWi7ZJgTt9/C3omCxPkIKVjtwcXzXoSA31zUWUnBzTkEUg==";
       };
     };
     "node-cache-4.2.0" = {
@@ -22531,6 +22684,15 @@ let
         sha512 = "MIBs+AAd6dJ2SklbbE8RUDRlIVhU8MaNLh1A9SUZDUHPiZkWLFde6UNwG41yQHZEToHgJMXqyVZ9UcS/ReOVTg==";
       };
     };
+    "node-notifier-5.3.0" = {
+      name = "node-notifier";
+      packageName = "node-notifier";
+      version = "5.3.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/node-notifier/-/node-notifier-5.3.0.tgz";
+        sha512 = "AhENzCSGZnZJgBARsUjnQ7DnZbzyP+HxlVXuD0xqAnvL8q+OqtSX7lGg9e8nHzwXkMMXNdVeqq4E2M3EUAqX6Q==";
+      };
+    };
     "node-phantom-simple-2.2.4" = {
       name = "node-phantom-simple";
       packageName = "node-phantom-simple";
@@ -22576,31 +22738,31 @@ let
         sha512 = "Bb9M5bFrOqoFxBVxfstBM/g+VPaV4EPQptXQBMrlsCd3P40CXcGL0mDylXU+3cekWNd5hLHfqTHvXJdkowHGDw==";
       };
     };
-    "node-red-node-rbe-0.2.3" = {
+    "node-red-node-rbe-0.2.4" = {
       name = "node-red-node-rbe";
       packageName = "node-red-node-rbe";
-      version = "0.2.3";
+      version = "0.2.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/node-red-node-rbe/-/node-red-node-rbe-0.2.3.tgz";
-        sha512 = "5+MtH9t8tX6Aw6M+SeoyGR23XplNTOln3aTQ7El9tj/606bxea4GxYyvV4ymTmuoODz3GXQlLLQVdGkFLyIdDQ==";
+        url = "https://registry.npmjs.org/node-red-node-rbe/-/node-red-node-rbe-0.2.4.tgz";
+        sha512 = "ft/8/dTRGzGQ9vCnAzuBxzR+aDv4Yun/vuSKi/eI5Qj2/ZBal28L9HpWziSTWlLrMhZns8CRz7s2p84P2ee/vA==";
       };
     };
-    "node-red-node-twitter-1.1.3" = {
+    "node-red-node-twitter-1.1.4" = {
       name = "node-red-node-twitter";
       packageName = "node-red-node-twitter";
-      version = "1.1.3";
+      version = "1.1.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/node-red-node-twitter/-/node-red-node-twitter-1.1.3.tgz";
-        sha512 = "H4q6wfIeDkDp7ykFh4nK7vrnJa9NI3FmC2rASabup/9LEJ5XD5KXH07eqo+B3Cf3jAzJDmL7RFEFucA8C1oqCw==";
+        url = "https://registry.npmjs.org/node-red-node-twitter/-/node-red-node-twitter-1.1.4.tgz";
+        sha512 = "mkw8HOosXHMBRdyJkio77vPx4Ls5IY26P5ZyoMWmKMkimXKTnX00DdpmNlkW+dHwMDYq1H66WzFtQhNOdEAbgA==";
       };
     };
-    "node-request-by-swagger-1.1.3" = {
+    "node-request-by-swagger-1.1.4" = {
       name = "node-request-by-swagger";
       packageName = "node-request-by-swagger";
-      version = "1.1.3";
+      version = "1.1.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/node-request-by-swagger/-/node-request-by-swagger-1.1.3.tgz";
-        sha512 = "granjsEA0c+1GnJaKnOjJy1E3wWLADUnAg+x1eopWOo+oMDfRYKJjCBaInUgrli/yEnvUAJoymGhExP/6tcOyQ==";
+        url = "https://registry.npmjs.org/node-request-by-swagger/-/node-request-by-swagger-1.1.4.tgz";
+        sha512 = "hwaTaFPUwNKns5qXwGJpLQM3Z5zRluYeAxpYy1L8fWmWdT/DjLmsnW8/oGlSN8Vo4R28c2znfUoBUiB/RlPptw==";
       };
     };
     "node-ssdp-2.9.1" = {
@@ -22662,7 +22824,7 @@ let
       packageName = "node.extend";
       version = "1.0.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/node.extend/-/node.extend-1.0.0.tgz";
+        url = "http://registry.npmjs.org/node.extend/-/node.extend-1.0.0.tgz";
         sha1 = "ab83960c477280d01ba5554a0d8fd3acfe39336e";
       };
     };
@@ -22675,6 +22837,15 @@ let
         sha1 = "7525a2875677ea534784a5e10ac78956139614df";
       };
     };
+    "node.extend-2.0.1" = {
+      name = "node.extend";
+      packageName = "node.extend";
+      version = "2.0.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/node.extend/-/node.extend-2.0.1.tgz";
+        sha512 = "42zXr2Cy16E58KEHm8vz2LE3IJWW0xUrQw0L+R2sII7NIiqKMa9JlwX02YFHg5+IKDg+Es1ZE8nD7ucUWR16UA==";
+      };
+    };
     "nodebmc-0.0.7" = {
       name = "nodebmc";
       packageName = "nodebmc";
@@ -22747,13 +22918,13 @@ let
         sha1 = "586db8101db30cb4438eb546737a41aad0cf13d5";
       };
     };
-    "nodemon-1.18.4" = {
+    "nodemon-1.18.5" = {
       name = "nodemon";
       packageName = "nodemon";
-      version = "1.18.4";
+      version = "1.18.5";
       src = fetchurl {
-        url = "https://registry.npmjs.org/nodemon/-/nodemon-1.18.4.tgz";
-        sha512 = "hyK6vl65IPnky/ee+D3IWvVGgJa/m3No2/Xc/3wanS6Ce1MWjCzH6NnhPJ/vZM+6JFym16jtHx51lmCMB9HDtg==";
+        url = "https://registry.npmjs.org/nodemon/-/nodemon-1.18.5.tgz";
+        sha512 = "8806dC8dfBlbxQmqNOSEeay/qlbddKvFzxIGNxnPtxUlTtH77xsrC66RnA3M47HCSgMgE5bj+U586o50RowXBg==";
       };
     };
     "nodesecurity-npm-utils-6.0.0" = {
@@ -22765,6 +22936,15 @@ let
         sha512 = "NLRle1woNaT2orR6fue2jNqkhxDTktgJj3sZxvR/8kp21pvOY7Gwlx5wvo0H8ZVPqdgd2nE2ADB9wDu5Cl8zNg==";
       };
     };
+    "nomnom-1.6.2" = {
+      name = "nomnom";
+      packageName = "nomnom";
+      version = "1.6.2";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/nomnom/-/nomnom-1.6.2.tgz";
+        sha1 = "84a66a260174408fc5b77a18f888eccc44fb6971";
+      };
+    };
     "nomnom-1.8.1" = {
       name = "nomnom";
       packageName = "nomnom";
@@ -22981,13 +23161,13 @@ let
         sha512 = "COlxSO5PK9UvZXIa7/sqJDZOlffWFx9+CKJJWkdbhUJMBwcf9sof2jxt4uiVsl+nY3sy0/XFGl4iGr8GoKfiXA==";
       };
     };
-    "npm-pick-manifest-2.1.0" = {
+    "npm-pick-manifest-2.2.3" = {
       name = "npm-pick-manifest";
       packageName = "npm-pick-manifest";
-      version = "2.1.0";
+      version = "2.2.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/npm-pick-manifest/-/npm-pick-manifest-2.1.0.tgz";
-        sha512 = "q9zLP8cTr8xKPmMZN3naxp1k/NxVFsjxN6uWuO1tiw9gxg7wZWQ/b5UTfzD0ANw2q1lQxdLKTeCCksq+bPSgbQ==";
+        url = "https://registry.npmjs.org/npm-pick-manifest/-/npm-pick-manifest-2.2.3.tgz";
+        sha512 = "+IluBC5K201+gRU85vFlUwX3PFShZAbAgDNp2ewJdWMVSppdo/Zih0ul2Ecky/X7b51J7LrrUAP+XOmOCvYZqA==";
       };
     };
     "npm-prefix-1.2.0" = {
@@ -23112,7 +23292,7 @@ let
       packageName = "npmlog";
       version = "2.0.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/npmlog/-/npmlog-2.0.4.tgz";
+        url = "http://registry.npmjs.org/npmlog/-/npmlog-2.0.4.tgz";
         sha1 = "98b52530f2514ca90d09ec5b22c8846722375692";
       };
     };
@@ -23130,7 +23310,7 @@ let
       packageName = "nprogress";
       version = "0.2.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/nprogress/-/nprogress-0.2.0.tgz";
+        url = "http://registry.npmjs.org/nprogress/-/nprogress-0.2.0.tgz";
         sha1 = "cb8f34c53213d895723fcbab907e9422adbcafb1";
       };
     };
@@ -23143,13 +23323,13 @@ let
         sha1 = "883ca2ec605f5ed64a4d5190b2625401928f8f8d";
       };
     };
-    "nth-check-1.0.1" = {
+    "nth-check-1.0.2" = {
       name = "nth-check";
       packageName = "nth-check";
-      version = "1.0.1";
+      version = "1.0.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/nth-check/-/nth-check-1.0.1.tgz";
-        sha1 = "9929acdf628fc2c41098deab82ac580cf149aae4";
+        url = "https://registry.npmjs.org/nth-check/-/nth-check-1.0.2.tgz";
+        sha512 = "WeBOdju8SnzPN5vTUJYxYUxLeXpCaVP5i5e0LF8fg7WORF2Wd7wFX/pk0tYZk7s8T+J7VLy0Da6J1+wCT0AtHg==";
       };
     };
     "number-is-nan-1.0.1" = {
@@ -23621,13 +23801,13 @@ let
         sha1 = "42c3e18ec95466b6bf0dc42f3a2945c3f0cad8fc";
       };
     };
-    "opencollective-postinstall-2.0.0" = {
+    "opencollective-postinstall-2.0.1" = {
       name = "opencollective-postinstall";
       packageName = "opencollective-postinstall";
-      version = "2.0.0";
+      version = "2.0.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/opencollective-postinstall/-/opencollective-postinstall-2.0.0.tgz";
-        sha512 = "XAe80GycLe2yRGnJsUtt+EO5lk06XYRQt4kJJe53O2kJHPZJOZ+XMF/b47HW96e6LhfKVpwnXVr/s56jhV98jg==";
+        url = "https://registry.npmjs.org/opencollective-postinstall/-/opencollective-postinstall-2.0.1.tgz";
+        sha512 = "saQQ9hjLwu/oS0492eyYotoh+bra1819cfAT5rjY/e4REWwuc8IgZ844Oo44SiftWcJuBiqp0SA0BFVbmLX0IQ==";
       };
     };
     "opener-1.4.3" = {
@@ -23702,13 +23882,13 @@ let
         sha512 = "YF9MNdVy/0qvJvDtunAOzFw9iasOQHpVthTCvGzxt61Il64AYSGdK+rYwld7NAfk9qJ7dt+hymBNSc9LNYS+Sw==";
       };
     };
-    "optimism-0.6.6" = {
+    "optimism-0.6.8" = {
       name = "optimism";
       packageName = "optimism";
-      version = "0.6.6";
+      version = "0.6.8";
       src = fetchurl {
-        url = "https://registry.npmjs.org/optimism/-/optimism-0.6.6.tgz";
-        sha512 = "1Y6LY7pYbXP5y6yeXYfXhxJi9hsxYAZWpt7bBp4seAwfcYtaN7tq9wot/pdrhyI809/K4gDm3BcZcEkmwGevjg==";
+        url = "https://registry.npmjs.org/optimism/-/optimism-0.6.8.tgz";
+        sha512 = "bN5n1KCxSqwBDnmgDnzMtQTHdL+uea2HYFx1smvtE+w2AMl0Uy31g0aXnP/Nt85OINnMJPRpJyfRQLTCqn5Weg==";
       };
     };
     "optimist-0.2.8" = {
@@ -24206,13 +24386,13 @@ let
         sha1 = "79b302fc144cdfbb4ab6feba7040e6a5d99c79c7";
       };
     };
-    "pacote-9.1.0" = {
+    "pacote-9.2.3" = {
       name = "pacote";
       packageName = "pacote";
-      version = "9.1.0";
+      version = "9.2.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/pacote/-/pacote-9.1.0.tgz";
-        sha512 = "AFXaSWhOtQf3jHqEvg+ZYH/dfT8TKq6TKspJ4qEFwVVuh5aGvMIk6SNF8vqfzz+cBceDIs9drOcpBbrPai7i+g==";
+        url = "https://registry.npmjs.org/pacote/-/pacote-9.2.3.tgz";
+        sha512 = "Y3+yY3nBRAxMlZWvr62XLJxOwCmG9UmkGZkFurWHoCjqF0cZL72cTOCRJTvWw8T4OhJS2RTg13x4oYYriauvEw==";
       };
     };
     "pad-0.0.5" = {
@@ -24986,7 +25166,7 @@ let
       packageName = "phantomjs";
       version = "1.9.20";
       src = fetchurl {
-        url = "https://registry.npmjs.org/phantomjs/-/phantomjs-1.9.20.tgz";
+        url = "http://registry.npmjs.org/phantomjs/-/phantomjs-1.9.20.tgz";
         sha1 = "4424aca20e14d255c0b0889af6f6b8973da10e0d";
       };
     };
@@ -24999,6 +25179,15 @@ let
         sha1 = "efd212a4a3966d3647684ea8ba788549be2aefef";
       };
     };
+    "pid-from-port-1.1.3" = {
+      name = "pid-from-port";
+      packageName = "pid-from-port";
+      version = "1.1.3";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/pid-from-port/-/pid-from-port-1.1.3.tgz";
+        sha512 = "OlE82n3yMOE5dY9RMOwxhoWefeMlxwk5IVxoj0sSzSFIlmvhN4obzTvO3s/d/b5JhcgXikjaspsy/HuUDTqbBg==";
+      };
+    };
     "piece-length-1.0.0" = {
       name = "piece-length";
       packageName = "piece-length";
@@ -25013,7 +25202,7 @@ let
       packageName = "pify";
       version = "2.3.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/pify/-/pify-2.3.0.tgz";
+        url = "http://registry.npmjs.org/pify/-/pify-2.3.0.tgz";
         sha1 = "ed141a6ac043a849ea588498e7dca8b15330e90c";
       };
     };
@@ -25296,13 +25485,13 @@ let
         sha1 = "8dd70c4fe7c694109add784ffe80eacac1e7b28d";
       };
     };
-    "portfinder-1.0.17" = {
+    "portfinder-1.0.19" = {
       name = "portfinder";
       packageName = "portfinder";
-      version = "1.0.17";
+      version = "1.0.19";
       src = fetchurl {
-        url = "https://registry.npmjs.org/portfinder/-/portfinder-1.0.17.tgz";
-        sha512 = "syFcRIRzVI1BoEFOCaAiizwDolh1S1YXSodsVhncbhjzjZQulhczNRbqnUl9N31Q4dKGOXsNDqxC2BWBgSMqeQ==";
+        url = "https://registry.npmjs.org/portfinder/-/portfinder-1.0.19.tgz";
+        sha512 = "23aeQKW9KgHe6citUrG3r9HjeX6vls0h713TAa+CwTKZwNIr/pD2ApaxYF4Um3ZZyq4ar+Siv3+fhoHaIwSOSw==";
       };
     };
     "posix-character-classes-0.1.1" = {
@@ -25440,22 +25629,22 @@ let
         sha1 = "c438ca2ca33e3927671db4ab69c0e52f936a4f0f";
       };
     };
-    "prisma-json-schema-0.1.1" = {
+    "prisma-json-schema-0.1.3" = {
       name = "prisma-json-schema";
       packageName = "prisma-json-schema";
-      version = "0.1.1";
+      version = "0.1.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/prisma-json-schema/-/prisma-json-schema-0.1.1.tgz";
-        sha512 = "epi2cDTQu/xk//H79dqRIzqk9ZEEqgcvHR7M/UhG/9UcSYY3OP/tJKDj5AYk86Xt2p5muDp3+y8ZGVNGZVQgNw==";
+        url = "https://registry.npmjs.org/prisma-json-schema/-/prisma-json-schema-0.1.3.tgz";
+        sha512 = "XZrf2080oR81mY8/OC8al68HiwBm0nXlFE727JIia0ZbNqwuV4MyRYk6E0+OIa6/9KEYxZrcAmoBs3EW1cCvnA==";
       };
     };
-    "prisma-yml-1.0.93" = {
+    "prisma-yml-1.20.0-beta.18" = {
       name = "prisma-yml";
       packageName = "prisma-yml";
-      version = "1.0.93";
+      version = "1.20.0-beta.18";
       src = fetchurl {
-        url = "https://registry.npmjs.org/prisma-yml/-/prisma-yml-1.0.93.tgz";
-        sha512 = "np7VXqA4t+qhmn2GXGIOL19IMWSyrI1T8uJH8Lrla9uslvSxch6bzarYcQgKsc+sTL/g1zbvNgRl19cr/CUuNQ==";
+        url = "https://registry.npmjs.org/prisma-yml/-/prisma-yml-1.20.0-beta.18.tgz";
+        sha512 = "wI/lOQrD78de2+ZNzJlbEYcYiUANtpdyT0VzAS+YbF5+1/O+shOnpwYsBtjrVL5Er0RwMkwH7j+oZQM61ENBMQ==";
       };
     };
     "prismjs-1.15.0" = {
@@ -25512,6 +25701,15 @@ let
         sha1 = "1638d8a8e34c2f440a91db95ab9aeb677fc185cf";
       };
     };
+    "process-exists-3.1.0" = {
+      name = "process-exists";
+      packageName = "process-exists";
+      version = "3.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/process-exists/-/process-exists-3.1.0.tgz";
+        sha512 = "X11vso1oNLtyDa2j8fsMol2fph1+5PoQ4vpEc1it/rM8eLuRTmrmTg4jfn82WhNur241AYitgjKCgmlgMRZesw==";
+      };
+    };
     "process-nextick-args-1.0.7" = {
       name = "process-nextick-args";
       packageName = "process-nextick-args";
@@ -25535,17 +25733,17 @@ let
       packageName = "progress";
       version = "1.1.8";
       src = fetchurl {
-        url = "https://registry.npmjs.org/progress/-/progress-1.1.8.tgz";
+        url = "http://registry.npmjs.org/progress/-/progress-1.1.8.tgz";
         sha1 = "e260c78f6161cdd9b0e56cc3e0a85de17c7a57be";
       };
     };
-    "progress-2.0.0" = {
+    "progress-2.0.1" = {
       name = "progress";
       packageName = "progress";
-      version = "2.0.0";
+      version = "2.0.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/progress/-/progress-2.0.0.tgz";
-        sha1 = "8a1be366bf8fc23db2bd23f10c6fe920b4389d1f";
+        url = "https://registry.npmjs.org/progress/-/progress-2.0.1.tgz";
+        sha512 = "OE+a6vzqazc+K6LxJrX5UPyKFvGnL5CYmq2jFGNIBWHpc4QyE49/YOumcrpQFJpfejmvRtbJzgO1zPmMCqlbBg==";
       };
     };
     "progress-string-1.2.2" = {
@@ -25746,13 +25944,13 @@ let
         sha512 = "SmjEuAf3hc3h3rWZ6V1YaaQw2MNJWK848gLJgzx/sefOJdNLujKinJVXIS0q2cBQpQn2Q32TinawZyDZPzm4kQ==";
       };
     };
-    "protoduck-5.0.0" = {
+    "protoduck-5.0.1" = {
       name = "protoduck";
       packageName = "protoduck";
-      version = "5.0.0";
+      version = "5.0.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/protoduck/-/protoduck-5.0.0.tgz";
-        sha512 = "agsGWD8/RZrS4ga6v82Fxb0RHIS2RZnbsSue6A9/MBRhB/jcqOANAMNrqM9900b8duj+Gx+T/JMy5IowDoO/hQ==";
+        url = "https://registry.npmjs.org/protoduck/-/protoduck-5.0.1.tgz";
+        sha512 = "WxoCeDCoCBY55BMvj4cAEjdVUFGRWed9ZxPlqTKYyw1nDDTQ4pqmnIMAGfJlg7Dx35uB/M+PHJPTmGOvaCaPTg==";
       };
     };
     "proxy-addr-1.0.10" = {
@@ -25764,15 +25962,6 @@ let
         sha1 = "0d40a82f801fc355567d2ecb65efe3f077f121c5";
       };
     };
-    "proxy-addr-1.1.5" = {
-      name = "proxy-addr";
-      packageName = "proxy-addr";
-      version = "1.1.5";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/proxy-addr/-/proxy-addr-1.1.5.tgz";
-        sha1 = "71c0ee3b102de3f202f3b64f608d173fcba1a918";
-      };
-    };
     "proxy-addr-2.0.4" = {
       name = "proxy-addr";
       packageName = "proxy-addr";
@@ -25836,6 +26025,15 @@ let
         sha1 = "d3fc114ba06995a45ec6893f484ceb1d78f5f476";
       };
     };
+    "ps-list-4.1.0" = {
+      name = "ps-list";
+      packageName = "ps-list";
+      version = "4.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/ps-list/-/ps-list-4.1.0.tgz";
+        sha512 = "DSpMj8PI5W7v2G4+rE+BymTKZPjlu6t/M1N6rPAa6Hwn+/e8jDmFJaq8/kpoGCvwd75g2h5DbjF2MduOMNyrsQ==";
+      };
+    };
     "ps-tree-0.0.3" = {
       name = "ps-tree";
       packageName = "ps-tree";
@@ -26007,15 +26205,6 @@ let
         sha1 = "7017a984c3b834de77bac38c10b776f22dfc1843";
       };
     };
-    "pull-abortable-4.1.1" = {
-      name = "pull-abortable";
-      packageName = "pull-abortable";
-      version = "4.1.1";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/pull-abortable/-/pull-abortable-4.1.1.tgz";
-        sha1 = "b3ad5aefb4116b25916d26db89393ac98d0dcea1";
-      };
-    };
     "pull-block-filter-1.0.0" = {
       name = "pull-block-filter";
       packageName = "pull-block-filter";
@@ -26241,13 +26430,13 @@ let
         sha1 = "5f99af15e8846d48ecf625edc248ec2cf57f6b0d";
       };
     };
-    "pull-inactivity-2.1.2" = {
+    "pull-inactivity-2.1.3" = {
       name = "pull-inactivity";
       packageName = "pull-inactivity";
-      version = "2.1.2";
+      version = "2.1.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/pull-inactivity/-/pull-inactivity-2.1.2.tgz";
-        sha1 = "37a3d6ebbfac292cd435f5e481e5074c8c1fad75";
+        url = "https://registry.npmjs.org/pull-inactivity/-/pull-inactivity-2.1.3.tgz";
+        sha512 = "swJ/jwkIN/O1bQCE3iY7Xy9r3gYuJ50MXaxZilw/HIduAy4tJu+vcz2/If0L+xNK7Ku/FfjtVbTpRTe7sf3hmA==";
       };
     };
     "pull-kvdiff-0.0.0" = {
@@ -26394,13 +26583,13 @@ let
         sha1 = "95d0c60ce6ea9c8bab8ca0b16e1f518352ed4e4f";
       };
     };
-    "pull-sort-1.0.1" = {
+    "pull-sort-1.0.2" = {
       name = "pull-sort";
       packageName = "pull-sort";
-      version = "1.0.1";
+      version = "1.0.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/pull-sort/-/pull-sort-1.0.1.tgz";
-        sha1 = "a8ab0c70c86f45343c9accc939fc42769ad3dc6d";
+        url = "https://registry.npmjs.org/pull-sort/-/pull-sort-1.0.2.tgz";
+        sha512 = "jGcAHMP+0Le+bEIhSODlbNNd3jW+S6XrXOlhVzfcKU5HQZjP92OzQSgHHSlwvWRsiTWi+UGgbFpL/5gGgmFoVQ==";
       };
     };
     "pull-stream-2.27.0" = {
@@ -26439,22 +26628,13 @@ let
         sha512 = "hJn4POeBrkttshdNl0AoSCVjMVSuBwuHocMerUdoZ2+oIUzrWHFTwJMlbHND7OiKLVgvz6TFj8ZUVywUMXccbw==";
       };
     };
-    "pull-stream-to-stream-1.3.4" = {
-      name = "pull-stream-to-stream";
-      packageName = "pull-stream-to-stream";
-      version = "1.3.4";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/pull-stream-to-stream/-/pull-stream-to-stream-1.3.4.tgz";
-        sha1 = "3f81d8216bd18d2bfd1a198190471180e2738399";
-      };
-    };
-    "pull-stringify-1.2.2" = {
+    "pull-stringify-2.0.0" = {
       name = "pull-stringify";
       packageName = "pull-stringify";
-      version = "1.2.2";
+      version = "2.0.0";
       src = fetchurl {
-        url = "http://registry.npmjs.org/pull-stringify/-/pull-stringify-1.2.2.tgz";
-        sha1 = "5a1c34e0075faf2f2f6d46004e36dccd33bd7c7c";
+        url = "http://registry.npmjs.org/pull-stringify/-/pull-stringify-2.0.0.tgz";
+        sha1 = "22ba31da95af0888e0fb559238b1fa915a6a5b64";
       };
     };
     "pull-through-1.0.18" = {
@@ -26772,24 +26952,6 @@ let
         sha1 = "13e26d28ad6b0ffaa91312cd3bf708ed351e7233";
       };
     };
-    "qs-6.5.0" = {
-      name = "qs";
-      packageName = "qs";
-      version = "6.5.0";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/qs/-/qs-6.5.0.tgz";
-        sha512 = "fjVFjW9yhqMhVGwRExCXLhJKrLlkYSaxNWdyc9rmHlrVZbk35YHH312dFd7191uQeXkI3mKLZTIbSvIeFwFemg==";
-      };
-    };
-    "qs-6.5.1" = {
-      name = "qs";
-      packageName = "qs";
-      version = "6.5.1";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/qs/-/qs-6.5.1.tgz";
-        sha512 = "eRzhrN1WSINYCDCbrz796z37LOe3m5tmW7RQf6oBntukAG1nmovJvhnwHHRMAfeoItc1m2Hk02WER2aQ/iqs+A==";
-      };
-    };
     "qs-6.5.2" = {
       name = "qs";
       packageName = "qs";
@@ -26844,13 +27006,13 @@ let
         sha1 = "9ec61f79049875707d69414596fd907a4d711e73";
       };
     };
-    "quick-format-unescaped-3.0.0" = {
+    "quick-format-unescaped-3.0.1" = {
       name = "quick-format-unescaped";
       packageName = "quick-format-unescaped";
-      version = "3.0.0";
+      version = "3.0.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/quick-format-unescaped/-/quick-format-unescaped-3.0.0.tgz";
-        sha512 = "XmIOc07VM2kPm6m3j/U6jgxyUgDm2Rgh2c1PPy0JUHoQRdoh86hOym0bHyF6G1T6sn+N5lildhvl/T59H5KVyA==";
+        url = "https://registry.npmjs.org/quick-format-unescaped/-/quick-format-unescaped-3.0.1.tgz";
+        sha512 = "Tnk4iJQ8x3V8ml3x9sLIf4tSDaVB9OJY/5gOrnxgK63CXKphhn8oYOPI4tqnXPQcZ3tCv7GFjeoYY5h6UAvuzg==";
       };
     };
     "quick-lru-1.1.0" = {
@@ -26889,6 +27051,24 @@ let
         sha1 = "8ccfd014d0f9608630dd73c19b8e4b057754a6a6";
       };
     };
+    "railroad-diagrams-1.0.0" = {
+      name = "railroad-diagrams";
+      packageName = "railroad-diagrams";
+      version = "1.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/railroad-diagrams/-/railroad-diagrams-1.0.0.tgz";
+        sha1 = "eb7e6267548ddedfb899c1b90e57374559cddb7e";
+      };
+    };
+    "randexp-0.4.6" = {
+      name = "randexp";
+      packageName = "randexp";
+      version = "0.4.6";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/randexp/-/randexp-0.4.6.tgz";
+        sha512 = "80WNmd9DA0tmZrw9qQa62GPPWfuXJknrmVmLcxvq4uZBdYqb1wYoKTmnlGUchvVWe0XiLupYkBoXVOxz3C8DYQ==";
+      };
+    };
     "random-access-file-2.0.1" = {
       name = "random-access-file";
       packageName = "random-access-file";
@@ -26934,13 +27114,13 @@ let
         sha1 = "f7d97d92dee6665ec5f6da08c7f963cad4b2ac99";
       };
     };
-    "randomatic-3.1.0" = {
+    "randomatic-3.1.1" = {
       name = "randomatic";
       packageName = "randomatic";
-      version = "3.1.0";
+      version = "3.1.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/randomatic/-/randomatic-3.1.0.tgz";
-        sha512 = "KnGPVE0lo2WoXxIZ7cPR8YBpiol4gsSuOwDSg410oHh80ZMp5EiypNqL2K4Z77vJn6lB5rap7IkAmcUlalcnBQ==";
+        url = "https://registry.npmjs.org/randomatic/-/randomatic-3.1.1.tgz";
+        sha512 = "TuDE5KxZ0J461RVjrJZCJc+J+zCkTb1MbH9AQUq68sMhOMcy9jLcb3BrZKgp9q9Ncltdg4QVqWrH02W2EFFVYw==";
       };
     };
     "randombytes-2.0.6" = {
@@ -27042,15 +27222,6 @@ let
         sha1 = "adfeace2e4fb3098058014d08c072dcc59758774";
       };
     };
-    "raw-body-2.3.2" = {
-      name = "raw-body";
-      packageName = "raw-body";
-      version = "2.3.2";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/raw-body/-/raw-body-2.3.2.tgz";
-        sha1 = "bcd60c77d3eb93cde0050295c3f379389bc88f89";
-      };
-    };
     "raw-body-2.3.3" = {
       name = "raw-body";
       packageName = "raw-body";
@@ -27060,13 +27231,13 @@ let
         sha512 = "9esiElv1BrZoI3rCDuOuKCBRbuApGGaDPQfjSflGxdy4oyzqghxu6klEkkVIvBje+FF0BX9coEv8KqW6X/7njw==";
       };
     };
-    "raw-socket-1.6.3" = {
+    "raw-socket-1.6.4" = {
       name = "raw-socket";
       packageName = "raw-socket";
-      version = "1.6.3";
+      version = "1.6.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/raw-socket/-/raw-socket-1.6.3.tgz";
-        sha512 = "OcplcSbIIyEZxW6YFsqbvyrUrqvwFNmA4jhA9ZmMhquLrd9VBzIrFRRZ2qaD98UpyVk/VYJLemO8haECHMmEgQ==";
+        url = "https://registry.npmjs.org/raw-socket/-/raw-socket-1.6.4.tgz";
+        sha512 = "ab/By3tp0gTDzwEJxgKUv+uIma0JFVnJElNMKNAqNiET+GQ2VAfR6eUVfnm0yRG/vxGu8gO2BYWhR30sQOTebg==";
       };
     };
     "rc-0.4.0" = {
@@ -27587,7 +27758,7 @@ let
       packageName = "remark";
       version = "3.2.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/remark/-/remark-3.2.3.tgz";
+        url = "http://registry.npmjs.org/remark/-/remark-3.2.3.tgz";
         sha1 = "802a38c3aa98c9e1e3ea015eeba211d27cb65e1f";
       };
     };
@@ -27843,13 +28014,13 @@ let
         sha1 = "5281770f68e0c9719e5163fd3fab482215f4fda5";
       };
     };
-    "requestretry-3.0.1" = {
+    "requestretry-3.0.2" = {
       name = "requestretry";
       packageName = "requestretry";
-      version = "3.0.1";
+      version = "3.0.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/requestretry/-/requestretry-3.0.1.tgz";
-        sha512 = "vJUdB4xucpx+Hc5N1hV44/fHmT4ovhrwGWfG9MtZR6AeO1G350IqPUXJL4gfZND6RtqoSqB+Zs9EeCsMizYf9A==";
+        url = "https://registry.npmjs.org/requestretry/-/requestretry-3.0.2.tgz";
+        sha512 = "3UXO4EOBwRFXm2AeAElyhM3bmMb57jZi5QC2httyXXSyT49O6o+AdzUZRA/vj5O2tE6xbdpDygRZb5Q19Q7lCA==";
       };
     };
     "require-directory-2.1.1" = {
@@ -28055,7 +28226,7 @@ let
       packageName = "restify";
       version = "4.0.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/restify/-/restify-4.0.3.tgz";
+        url = "http://registry.npmjs.org/restify/-/restify-4.0.3.tgz";
         sha1 = "e1e5b7ad9d4f6aeacd20e28f44a045f26c146dbc";
       };
     };
@@ -28284,13 +28455,22 @@ let
         sha1 = "6f04063a2d04eba3303a1bbc6765eef63037cf3d";
       };
     };
-    "router-1.3.3" = {
+    "router-2.0.0-alpha.1" = {
       name = "router";
       packageName = "router";
-      version = "1.3.3";
+      version = "2.0.0-alpha.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/router/-/router-1.3.3.tgz";
-        sha1 = "c142f6b5ea4d6b3359022ca95b6580bd217f89cf";
+        url = "https://registry.npmjs.org/router/-/router-2.0.0-alpha.1.tgz";
+        sha512 = "fz/T/qLkJM6RTtbqGqA1+uZ88ejqJoPyKeJAeXPYjebA7HzV/UyflH4gXWqW/Y6SERnp4kDwNARjqy6se3PcOw==";
+      };
+    };
+    "rss-parser-3.5.2" = {
+      name = "rss-parser";
+      packageName = "rss-parser";
+      version = "3.5.2";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/rss-parser/-/rss-parser-3.5.2.tgz";
+        sha512 = "tpD+psqq1v6yqH0aLZtmnK0yp5PmewYrHlAonrUIEepEJSqUq553raC3sY6Tw/3DxsnZg8fsa/nSU5VwBZYsyg==";
       };
     };
     "rsvp-3.6.2" = {
@@ -28469,7 +28649,7 @@ let
       packageName = "safe-regex";
       version = "1.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/safe-regex/-/safe-regex-1.1.0.tgz";
+        url = "http://registry.npmjs.org/safe-regex/-/safe-regex-1.1.0.tgz";
         sha1 = "40a3669f3b077d1e943d44629e157dd48023bf2e";
       };
     };
@@ -28590,6 +28770,15 @@ let
         sha512 = "MuCAyrGZcTLfQoH2XoBlQ8C6bzwN88XT/0slOGz0pn8+gIP85BOAfYa44ZXQUTOwRwPU0QvgU+V+OSajl/59Xg==";
       };
     };
+    "sec-1.0.0" = {
+      name = "sec";
+      packageName = "sec";
+      version = "1.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/sec/-/sec-1.0.0.tgz";
+        sha1 = "033d60a3ad20ecf2e00940d14f97823465774335";
+      };
+    };
     "secret-handshake-1.1.14" = {
       name = "secret-handshake";
       packageName = "secret-handshake";
@@ -28617,13 +28806,13 @@ let
         sha1 = "f0c82d98a3b139a8776a8808050b824431087fca";
       };
     };
-    "secure-scuttlebutt-18.5.0" = {
+    "secure-scuttlebutt-18.6.0" = {
       name = "secure-scuttlebutt";
       packageName = "secure-scuttlebutt";
-      version = "18.5.0";
+      version = "18.6.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/secure-scuttlebutt/-/secure-scuttlebutt-18.5.0.tgz";
-        sha512 = "b50xp0XAWtd6y4ygw2RRgDxaFNgGqC7XahRt/mC4XhiCe6HoTjpt6j07HVnTDcRtLzNiCPKlFJnYySFTFay2lQ==";
+        url = "https://registry.npmjs.org/secure-scuttlebutt/-/secure-scuttlebutt-18.6.0.tgz";
+        sha512 = "gKQ8tJVnxd8WJEMusXyVkcHGZHoYB+F+TuQYisFYlhAntqlKBExdN+IT6DjVmHev7DvxE68PVtR8Ijqme93d2w==";
       };
     };
     "seek-bzip-1.0.5" = {
@@ -28860,15 +29049,6 @@ let
         sha1 = "765e7607c8055452bba6f0b052595350986036de";
       };
     };
-    "send-0.15.6" = {
-      name = "send";
-      packageName = "send";
-      version = "0.15.6";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/send/-/send-0.15.6.tgz";
-        sha1 = "20f23a9c925b762ab82705fe2f9db252ace47e34";
-      };
-    };
     "send-0.16.2" = {
       name = "send";
       packageName = "send";
@@ -28995,15 +29175,6 @@ let
         sha1 = "ce5a6ecd3101fed5ec09827dac22a9c29bfb0535";
       };
     };
-    "serve-static-1.12.6" = {
-      name = "serve-static";
-      packageName = "serve-static";
-      version = "1.12.6";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/serve-static/-/serve-static-1.12.6.tgz";
-        sha1 = "b973773f63449934da54e5beba5e31d9f4211577";
-      };
-    };
     "serve-static-1.13.2" = {
       name = "serve-static";
       packageName = "serve-static";
@@ -29085,15 +29256,6 @@ let
         sha1 = "290cbb232e306942d7d7ea9b83732ab7856f8285";
       };
     };
-    "setprototypeof-1.0.3" = {
-      name = "setprototypeof";
-      packageName = "setprototypeof";
-      version = "1.0.3";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/setprototypeof/-/setprototypeof-1.0.3.tgz";
-        sha1 = "66567e37043eeb4f04d91bd658c0cbefb55b8e04";
-      };
-    };
     "setprototypeof-1.1.0" = {
       name = "setprototypeof";
       packageName = "setprototypeof";
@@ -29229,13 +29391,13 @@ let
         sha512 = "vFwSUfQvqybiICwZY5+DAWIPLKsWO31Q91JSKl3UYv+K5c2QRPzn0qzec6QPu1Qc9eHYItiP3NdJqNVqetYAww==";
       };
     };
-    "shortid-2.2.13" = {
+    "shortid-2.2.14" = {
       name = "shortid";
       packageName = "shortid";
-      version = "2.2.13";
+      version = "2.2.14";
       src = fetchurl {
-        url = "https://registry.npmjs.org/shortid/-/shortid-2.2.13.tgz";
-        sha512 = "dBuNnQGKrJNfjunmXI2X7bl1gnMO4PwbNxrTzO1JvilODmL7WyyCtA+DYxe9XunLXmxmgzFIvKPQ6XRAQrr46Q==";
+        url = "https://registry.npmjs.org/shortid/-/shortid-2.2.14.tgz";
+        sha512 = "4UnZgr9gDdA1kaKj/38IiudfC3KHKhDc1zi/HSxd9FQDR0VLwH3/y79tZJLsVYPsJgIjeHjqIWaWVRJUj9qZOQ==";
       };
     };
     "shush-1.0.0" = {
@@ -29337,13 +29499,13 @@ let
         sha512 = "Wvre/Jq5vgoz31Z9stYWPLn0PqRqmBDpFSdypAnHu5AvRVCYPRYGnvryNLiXu8GOBNDH82J2FRHUGMjjHUpXFw==";
       };
     };
-    "simple-git-1.105.0" = {
+    "simple-git-1.106.0" = {
       name = "simple-git";
       packageName = "simple-git";
-      version = "1.105.0";
+      version = "1.106.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/simple-git/-/simple-git-1.105.0.tgz";
-        sha512 = "ZrGcCPRIKCm6Q8gNJ+gx+leHqaokKpXae6K9lZpVD4sfeA2/rVvxcIR4KVVujNOmA6wHE2xaQ0GQWuIY88o6pA==";
+        url = "https://registry.npmjs.org/simple-git/-/simple-git-1.106.0.tgz";
+        sha512 = "LaxKq4X9Om7bb16Cpinc36hT1YLHMM9KDQMSWJVv4Y1TGDEUuZbs+0lAk2JSKkCEO3xFjcMSx5OjvZo+i4eJvQ==";
       };
     };
     "simple-lru-cache-0.0.2" = {
@@ -29531,7 +29693,7 @@ let
       packageName = "slice-ansi";
       version = "0.0.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/slice-ansi/-/slice-ansi-0.0.4.tgz";
+        url = "http://registry.npmjs.org/slice-ansi/-/slice-ansi-0.0.4.tgz";
         sha1 = "edbf8903f66f7ce2f8eafd6ceed65e264c831b35";
       };
     };
@@ -29544,6 +29706,15 @@ let
         sha512 = "POqxBK6Lb3q6s047D/XsDVNPnF9Dl8JSaqe9h9lURl0OdNqy/ujDrOiIHtsqXMGbWWTIomRzAMaTyawAU//Reg==";
       };
     };
+    "slice-ansi-2.0.0" = {
+      name = "slice-ansi";
+      packageName = "slice-ansi";
+      version = "2.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/slice-ansi/-/slice-ansi-2.0.0.tgz";
+        sha512 = "4j2WTWjp3GsZ+AOagyzVbzp4vWGtZ0hEZ/gDY/uTvm6MTxUfTUIsnMIFb1bn8o0RuXiqUw15H1bue8f22Vw2oQ==";
+      };
+    };
     "sliced-0.0.3" = {
       name = "sliced";
       packageName = "sliced";
@@ -29684,7 +29855,7 @@ let
       packageName = "sntp";
       version = "0.1.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/sntp/-/sntp-0.1.4.tgz";
+        url = "http://registry.npmjs.org/sntp/-/sntp-0.1.4.tgz";
         sha1 = "5ef481b951a7b29affdf4afd7f26838fc1120f84";
       };
     };
@@ -29693,7 +29864,7 @@ let
       packageName = "sntp";
       version = "1.0.9";
       src = fetchurl {
-        url = "https://registry.npmjs.org/sntp/-/sntp-1.0.9.tgz";
+        url = "http://registry.npmjs.org/sntp/-/sntp-1.0.9.tgz";
         sha1 = "6541184cc90aeea6c6e7b35e2659082443c66198";
       };
     };
@@ -29706,13 +29877,13 @@ let
         sha512 = "FL1b58BDrqS3A11lJ0zEdnJ3UOKqVxawAkF3k7F0CVN7VQ34aZrV+G8BZ1WC9ZL7NyrwsW0oviwsWDgRuVYtJg==";
       };
     };
-    "snyk-1.103.4" = {
+    "snyk-1.106.1" = {
       name = "snyk";
       packageName = "snyk";
-      version = "1.103.4";
+      version = "1.106.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/snyk/-/snyk-1.103.4.tgz";
-        sha512 = "ynLlsLDjAkzymd0qi1il6f34S4oNTfIgvFCFvkYxvqfBkedfOoDQT4TLU8gi+55MGM6iornf2iefC2FW92BwnQ==";
+        url = "https://registry.npmjs.org/snyk/-/snyk-1.106.1.tgz";
+        sha512 = "WMHCAoRfXsHRXdMxImvabsZ35ycRYvvIeJyftfKUpP1y4Dq0nu2Evn4SL1z8ZX0q2TpCiQmU7PE4+WhoZr3KnQ==";
       };
     };
     "snyk-config-2.2.0" = {
@@ -29724,22 +29895,22 @@ let
         sha512 = "mq0wbP/AgjcmRq5i5jg2akVVV3iSYUPTowZwKn7DChRLDL8ySOzWAwan+ImXiyNbrWo87FNI/15O6MpOnTxOIg==";
       };
     };
-    "snyk-docker-plugin-1.12.0" = {
+    "snyk-docker-plugin-1.12.1" = {
       name = "snyk-docker-plugin";
       packageName = "snyk-docker-plugin";
-      version = "1.12.0";
+      version = "1.12.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/snyk-docker-plugin/-/snyk-docker-plugin-1.12.0.tgz";
-        sha512 = "QqKq2bGdnf1L2PNGQrHoqcoaV/PIlJv1qjKIzwA93gfhToKGkgJ31oPXwfef/l9N+ui0Y44c4POBHFbFf8PlJw==";
+        url = "https://registry.npmjs.org/snyk-docker-plugin/-/snyk-docker-plugin-1.12.1.tgz";
+        sha512 = "9/k+tZORb0CUoE+nFvG+ADc6vzHAkgiGR/7aZ35vxpuc9vW37LFWjmXZAfyoiGNOn1ICrPxSxarah8YsFEwE8Q==";
       };
     };
-    "snyk-go-plugin-1.5.2" = {
+    "snyk-go-plugin-1.6.0" = {
       name = "snyk-go-plugin";
       packageName = "snyk-go-plugin";
-      version = "1.5.2";
+      version = "1.6.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/snyk-go-plugin/-/snyk-go-plugin-1.5.2.tgz";
-        sha512 = "XWajcSh6Ld+I+WdcyU3DGDuE2ydThQd8ORkESy0nQ2LwekygLYVYN66OBy0uxpqYfd4qoqeg+J8lb4oGzCmyGA==";
+        url = "https://registry.npmjs.org/snyk-go-plugin/-/snyk-go-plugin-1.6.0.tgz";
+        sha512 = "E6aYw7XAXSs2wJR3fU+vGQ1lVyjAw8PHIQYQwBwMkTHByhJIWPcu6Hy/jT5LcjJHlhYXlpOuk53HeLVK+kcXrQ==";
       };
     };
     "snyk-gradle-plugin-2.1.0" = {
@@ -29805,13 +29976,13 @@ let
         sha512 = "CEioNnDzccHyid7UIVl3bJ1dnG4co4ofI+KxuC1mo0IUXy64gxnBTeVoZF5gVLWbAyxGxSeW8f0+8GmWMHVb7w==";
       };
     };
-    "snyk-python-plugin-1.8.2" = {
+    "snyk-python-plugin-1.9.0" = {
       name = "snyk-python-plugin";
       packageName = "snyk-python-plugin";
-      version = "1.8.2";
+      version = "1.9.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/snyk-python-plugin/-/snyk-python-plugin-1.8.2.tgz";
-        sha512 = "LBvjztnXarSHKyhivzM567icOOLOB98I7S9EEnjepuG+EZ0jiZzqOEMVRmzuYi+hRq3Cwh0hhjkwgJAQpKDz+g==";
+        url = "https://registry.npmjs.org/snyk-python-plugin/-/snyk-python-plugin-1.9.0.tgz";
+        sha512 = "zlyOHoCpmyVym9AwkboeepzEGrY3gHsM7eWP/nJ85TgCnQO5H5orKm3RL57PNbWRY+BnDmoQQ+udQgjym2+3sg==";
       };
     };
     "snyk-resolve-1.0.1" = {
@@ -30390,13 +30561,13 @@ let
         sha512 = "Yg6D3XpRD4kkOmTpdgbUiEJFKghJH03fiC1OPll5h/0sO6neh2jqRDVHOQ4o/LMea0tgCkbMgea5ip/e+MkWyg==";
       };
     };
-    "spdx-license-ids-3.0.1" = {
+    "spdx-license-ids-3.0.2" = {
       name = "spdx-license-ids";
       packageName = "spdx-license-ids";
-      version = "3.0.1";
+      version = "3.0.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/spdx-license-ids/-/spdx-license-ids-3.0.1.tgz";
-        sha512 = "TfOfPcYGBB5sDuPn3deByxPhmfegAhpDYKSOXZQN81Oyrrif8ZCodOLzK3AesELnCx03kikhyDwh0pfvvQvF8w==";
+        url = "https://registry.npmjs.org/spdx-license-ids/-/spdx-license-ids-3.0.2.tgz";
+        sha512 = "qky9CVt0lVIECkEsYbNILVnPvycuEBkXoMFLRWsREkomQLevYhtRKC+R91a5TOAQ3bCMjikRwhyaRqj1VYatYg==";
       };
     };
     "spdy-1.32.5" = {
@@ -30543,13 +30714,13 @@ let
         sha1 = "06cd70795ee58d1462d100a45c660df3179d3b39";
       };
     };
-    "ssb-blobs-1.1.5" = {
+    "ssb-blobs-1.1.6" = {
       name = "ssb-blobs";
       packageName = "ssb-blobs";
-      version = "1.1.5";
+      version = "1.1.6";
       src = fetchurl {
-        url = "https://registry.npmjs.org/ssb-blobs/-/ssb-blobs-1.1.5.tgz";
-        sha512 = "DeeInkFU8oN1mYlPVrqrm9tupf6wze4HuowK7N2vv/O+UeSLuYPU1p4HrxSqdAPvUabr0OtvbFA6z1T4nw+9fw==";
+        url = "https://registry.npmjs.org/ssb-blobs/-/ssb-blobs-1.1.6.tgz";
+        sha512 = "/dQIhg19Sk/cnRg25yUFFKhY67eB+Mlx00rK138dCVz3JhKLdmgDbK8kF5Ik/C/DdxDVya3xJZRW0fexwGOAkw==";
       };
     };
     "ssb-client-4.6.0" = {
@@ -30561,31 +30732,31 @@ let
         sha512 = "LyH5Y/U7xvafmAuG1puyhNv4G3Ew9xC67dYgRX0wwbUf5iT422WB1Cvat9qGFAu3/BQbdctXtdEQPxaAn0+hYA==";
       };
     };
-    "ssb-config-2.3.5" = {
+    "ssb-config-2.3.7" = {
       name = "ssb-config";
       packageName = "ssb-config";
-      version = "2.3.5";
+      version = "2.3.7";
       src = fetchurl {
-        url = "https://registry.npmjs.org/ssb-config/-/ssb-config-2.3.5.tgz";
-        sha512 = "lT30POSTXX6nsACYwMkNto0M74YMoEzLqpSpZqK+AwaRWlNvFqGmjEMwLb5G5jz7deCrXJFo87O3IubiQrwdGg==";
+        url = "https://registry.npmjs.org/ssb-config/-/ssb-config-2.3.7.tgz";
+        sha512 = "djjLoNpDlE0K/UfhU1mNuJqOy8oJsv/6Q8RLDTHdby2Z+r2MxKRaACH3R9DMZyzgnd3wLjXba5ntNvsuabjx5g==";
       };
     };
-    "ssb-ebt-5.2.3" = {
+    "ssb-ebt-5.2.7" = {
       name = "ssb-ebt";
       packageName = "ssb-ebt";
-      version = "5.2.3";
+      version = "5.2.7";
       src = fetchurl {
-        url = "https://registry.npmjs.org/ssb-ebt/-/ssb-ebt-5.2.3.tgz";
-        sha512 = "LTIry3qRZRLqv3l97tcd22dNiLjZHz7Ynot0OQFG10zL4jsECSkSxMUqSwrFUTfZEySUxhAx92TDcafDy+/J3A==";
+        url = "https://registry.npmjs.org/ssb-ebt/-/ssb-ebt-5.2.7.tgz";
+        sha512 = "dLiLRtGMagSKRuOIBQzPDfAQf7LNFR8+g91tKxMPbV6WMENF2bojz3POd75i6BhXJhJx1A6zpO6IrMz3StmtbA==";
       };
     };
-    "ssb-friends-3.1.3" = {
+    "ssb-friends-3.1.6" = {
       name = "ssb-friends";
       packageName = "ssb-friends";
-      version = "3.1.3";
+      version = "3.1.6";
       src = fetchurl {
-        url = "https://registry.npmjs.org/ssb-friends/-/ssb-friends-3.1.3.tgz";
-        sha512 = "bufgvAcqjAyjKfmh788dr3fV9YYrIgdkIhfETPHidbgIKgx15clNUzjP/s7FZk2PwwrjHyQ54kE0BR2em6u/nQ==";
+        url = "https://registry.npmjs.org/ssb-friends/-/ssb-friends-3.1.6.tgz";
+        sha512 = "0wKk/MpQ+Xdteso7Ipmgq1AO7m0sAyJjtbEpaAPLR8Mb5uPcK0n/rgGG6nnI6Vl8z1fuhkiqy4BtLQshaSBi/A==";
       };
     };
     "ssb-git-0.5.0" = {
@@ -30696,31 +30867,31 @@ let
         sha512 = "y4OA2MvGl1jU7bUTYsTmMNSqlPt4eh9401THUW1DO4aFyBFEWvpa3eKJHc8aTmaph2hutPPbdKgEFsWDzw26uw==";
       };
     };
-    "ssb-ref-2.12.0" = {
+    "ssb-ref-2.13.6" = {
       name = "ssb-ref";
       packageName = "ssb-ref";
-      version = "2.12.0";
+      version = "2.13.6";
       src = fetchurl {
-        url = "https://registry.npmjs.org/ssb-ref/-/ssb-ref-2.12.0.tgz";
-        sha512 = "xcVFLYgvWkxZoNDCOQHLqgHYsjmfunVkdby9OPEygjufXbiW6zpnFTBqlqEBojBetxxtVdwCgZreD9kYXED/ZA==";
+        url = "https://registry.npmjs.org/ssb-ref/-/ssb-ref-2.13.6.tgz";
+        sha512 = "l4mvU4PwXYTWJFhps4g9RkvPAEqJ5klR3oFBEaUqXTHfDzEq2pAn11Np2JqH0CM9JnW/AbK9H+Uzw4aofA9D8A==";
       };
     };
-    "ssb-validate-3.0.11" = {
+    "ssb-validate-4.0.0" = {
       name = "ssb-validate";
       packageName = "ssb-validate";
-      version = "3.0.11";
+      version = "4.0.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/ssb-validate/-/ssb-validate-3.0.11.tgz";
-        sha512 = "mZPI9HKZtqPP7Qi26B0GR7HqYmmcELEaoj5zr8TlUcULg9BOZy7f4VSzcKZ36LIkvpuK2sfA6znxIlBLq78fjg==";
+        url = "https://registry.npmjs.org/ssb-validate/-/ssb-validate-4.0.0.tgz";
+        sha512 = "7pnbwM7zEdkVhw0gPZ70r0kipldRWa1G/Dvsaq1g91OvrRqjM6FLbNZ9yUwrkQEgfZB/1S+H743/VUzUfnXq2g==";
       };
     };
-    "ssb-ws-3.0.0" = {
+    "ssb-ws-3.0.2" = {
       name = "ssb-ws";
       packageName = "ssb-ws";
-      version = "3.0.0";
+      version = "3.0.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/ssb-ws/-/ssb-ws-3.0.0.tgz";
-        sha512 = "Qna9Oa9+MYhv+Xtqmidb6xww2JZAdO6ZzidJleWbOLJTSV2QkkB7aAFpWdYst/N78ZhThPqT/mdgEmWpaCqTbw==";
+        url = "https://registry.npmjs.org/ssb-ws/-/ssb-ws-3.0.2.tgz";
+        sha512 = "rQnbFIdzyQrB77y1UD0cWlW/TYO6rqCT1RO95p0ka6UQsEBtm/O7TN8h5AgroD9XqyxdusXhEbhobpUt41s1Cw==";
       };
     };
     "ssh-config-1.1.3" = {
@@ -30750,13 +30921,13 @@ let
         sha1 = "130f5975eddad963f1d56f92b9ac6c51fa9f83eb";
       };
     };
-    "sshpk-1.15.1" = {
+    "sshpk-1.15.2" = {
       name = "sshpk";
       packageName = "sshpk";
-      version = "1.15.1";
+      version = "1.15.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/sshpk/-/sshpk-1.15.1.tgz";
-        sha512 = "mSdgNUaidk+dRU5MhYtN9zebdzF2iG0cNPWy8HG+W8y+fT1JnSkh0fzzpjOa0L7P8i1Rscz38t0h4gPcKz43xA==";
+        url = "https://registry.npmjs.org/sshpk/-/sshpk-1.15.2.tgz";
+        sha512 = "Ra/OXQtuh0/enyl4ETZAfTaeksa6BXks5ZcjpSUNrjBr0DvrJKX+1fsKDPpT9TBXgHAFsa4510aNVgI8g/+SzA==";
       };
     };
     "sshpk-1.7.1" = {
@@ -31484,7 +31655,7 @@ let
       packageName = "strip-eof";
       version = "1.0.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/strip-eof/-/strip-eof-1.0.0.tgz";
+        url = "http://registry.npmjs.org/strip-eof/-/strip-eof-1.0.0.tgz";
         sha1 = "bb43ff5598a6eb05d89b59fcd129c983313606bf";
       };
     };
@@ -32020,6 +32191,24 @@ let
         sha512 = "rzS0heiNf8Xn7/mpdSVVSMAWAoy9bfb1WOTYC78Z0UQKeKa/CWS8FOq0lKGNa8DWKAn9gxjCvMLYc5PGXYlK2A==";
       };
     };
+    "taskkill-2.0.0" = {
+      name = "taskkill";
+      packageName = "taskkill";
+      version = "2.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/taskkill/-/taskkill-2.0.0.tgz";
+        sha1 = "a354305702a964357033027aa949eaed5331b784";
+      };
+    };
+    "tasklist-3.1.1" = {
+      name = "tasklist";
+      packageName = "tasklist";
+      version = "3.1.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/tasklist/-/tasklist-3.1.1.tgz";
+        sha512 = "G3I7QWUBSNWaekrJcDabydF6dcvy+vZ2PrX04JYq1p914TOLgpN+ryMtheGavs1LYVevTbTmwjQY8aeX8yLsyA==";
+      };
+    };
     "temp-0.6.0" = {
       name = "temp";
       packageName = "temp";
@@ -32277,17 +32466,17 @@ let
       packageName = "thunky";
       version = "0.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/thunky/-/thunky-0.1.0.tgz";
+        url = "http://registry.npmjs.org/thunky/-/thunky-0.1.0.tgz";
         sha1 = "bf30146824e2b6e67b0f2d7a4ac8beb26908684e";
       };
     };
-    "thunky-1.0.2" = {
+    "thunky-1.0.3" = {
       name = "thunky";
       packageName = "thunky";
-      version = "1.0.2";
+      version = "1.0.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/thunky/-/thunky-1.0.2.tgz";
-        sha1 = "a862e018e3fb1ea2ec3fce5d55605cf57f247371";
+        url = "https://registry.npmjs.org/thunky/-/thunky-1.0.3.tgz";
+        sha512 = "YwT8pjmNcAXBZqrubu22P4FYsh2D4dxRmnWBOL8Jk8bUcRUtc5326kx32tuTmFDAZtLOGEVNl8POAR8j896Iow==";
       };
     };
     "tildify-1.2.0" = {
@@ -32434,6 +32623,15 @@ let
         sha512 = "jRCJlojKnZ3addtTOjdIqoRuPEKBvNXcGYqzO6zWZX8KfKEpnGY5jfggJQ3EjKuu8D4bJRr0y+cYJFmYbImXGw==";
       };
     };
+    "tmp-graphql-config-extension-openapi-1.0.7" = {
+      name = "tmp-graphql-config-extension-openapi";
+      packageName = "tmp-graphql-config-extension-openapi";
+      version = "1.0.7";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/tmp-graphql-config-extension-openapi/-/tmp-graphql-config-extension-openapi-1.0.7.tgz";
+        sha512 = "NQPUaywaVC2hzWkBBsTX3sV2XfxU0mc409rJyrA7iCu5DSTjMLUqI+U4KJVSy/Ltp0zgbWMWua471R7zMql9Pw==";
+      };
+    };
     "to-absolute-glob-2.0.2" = {
       name = "to-absolute-glob";
       packageName = "to-absolute-glob";
@@ -32547,7 +32745,7 @@ let
       packageName = "to-vfile";
       version = "1.0.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/to-vfile/-/to-vfile-1.0.0.tgz";
+        url = "http://registry.npmjs.org/to-vfile/-/to-vfile-1.0.0.tgz";
         sha1 = "88defecd43adb2ef598625f0e3d59f7f342941ba";
       };
     };
@@ -32587,13 +32785,13 @@ let
         sha512 = "O7L5hhSQHxuufWUdcTRPfuTh3phKfAZ/dqfxZFoxPCj2RYmpaSGLEIs016FCXItQwNr08yefUB5TSjzRYnajTA==";
       };
     };
-    "topo-3.0.0" = {
+    "topo-3.0.3" = {
       name = "topo";
       packageName = "topo";
-      version = "3.0.0";
+      version = "3.0.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/topo/-/topo-3.0.0.tgz";
-        sha512 = "Tlu1fGlR90iCdIPURqPiufqAlCZYzLjHYVVbcFWDMcX7+tK8hdZWAfsMrD/pBul9jqHHwFjNdf1WaxA9vTRRhw==";
+        url = "https://registry.npmjs.org/topo/-/topo-3.0.3.tgz";
+        sha512 = "IgpPtvD4kjrJ7CRA3ov2FhWQADwv+Tdqbsf1ZnPUSAtCJ9e1Z44MmoSGDXGk4IppoZA7jd/QRkNddlLJWlUZsQ==";
       };
     };
     "torrent-discovery-5.4.0" = {
@@ -33100,13 +33298,13 @@ let
         sha512 = "kk80vLW9iGtjMnIv11qyxLqZm20UklzuR2tL0QAnDIygIUIemcZMxlMWudl9OOt76H3ntVzcTiddQ1/pAAJMYg==";
       };
     };
-    "typescript-3.1.3" = {
+    "typescript-3.1.6" = {
       name = "typescript";
       packageName = "typescript";
-      version = "3.1.3";
+      version = "3.1.6";
       src = fetchurl {
-        url = "https://registry.npmjs.org/typescript/-/typescript-3.1.3.tgz";
-        sha512 = "+81MUSyX+BaSo+u2RbozuQk/UWx6hfG0a5gHu4ANEM4sU96XbuIyAB+rWBW1u70c6a5QuZfuYICn3s2UjuHUpA==";
+        url = "https://registry.npmjs.org/typescript/-/typescript-3.1.6.tgz";
+        sha512 = "tDMYfVtvpb96msS1lDX9MEdHrW4yOuZ4Kdc4Him9oU796XldPYF/t2+uKoX0BBa0hXXwDlqYQbXY5Rzjzc5hBA==";
       };
     };
     "typewise-1.0.3" = {
@@ -33501,7 +33699,7 @@ let
       packageName = "unified";
       version = "2.1.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/unified/-/unified-2.1.4.tgz";
+        url = "http://registry.npmjs.org/unified/-/unified-2.1.4.tgz";
         sha1 = "14bc6cd40d98ffff75b405506bad873ecbbac3ba";
       };
     };
@@ -33739,6 +33937,15 @@ let
         sha1 = "d2f0f737d16b0615e72a6935ed04214572d56f97";
       };
     };
+    "unzipper-0.9.4" = {
+      name = "unzipper";
+      packageName = "unzipper";
+      version = "0.9.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/unzipper/-/unzipper-0.9.4.tgz";
+        sha512 = "kGrkTaphmXE+0/A5Q7rwcm/xHlDkXDOGEh6wuiN3SUQsyVWd7V51rwqttlNTT91JrLkfn34MoBNf38unF0vhRw==";
+      };
+    };
     "upath-1.1.0" = {
       name = "upath";
       packageName = "upath";
@@ -33987,7 +34194,7 @@ let
       packageName = "utf8";
       version = "2.0.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/utf8/-/utf8-2.0.0.tgz";
+        url = "http://registry.npmjs.org/utf8/-/utf8-2.0.0.tgz";
         sha1 = "79ce59eced874809cab9a71fc7102c7d45d4118d";
       };
     };
@@ -34014,7 +34221,7 @@ let
       packageName = "util";
       version = "0.10.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/util/-/util-0.10.3.tgz";
+        url = "http://registry.npmjs.org/util/-/util-0.10.3.tgz";
         sha1 = "7afb1afe50805246489e3db7fe0ed379336ac0f9";
       };
     };
@@ -34032,7 +34239,7 @@ let
       packageName = "util";
       version = "0.4.9";
       src = fetchurl {
-        url = "https://registry.npmjs.org/util/-/util-0.4.9.tgz";
+        url = "http://registry.npmjs.org/util/-/util-0.4.9.tgz";
         sha1 = "d95d5830d2328ec17dee3c80bfc50c33562b75a3";
       };
     };
@@ -34198,15 +34405,6 @@ let
         sha1 = "aab1a1fa30d45f88dd321148875ac02c0b55e5b4";
       };
     };
-    "v8flags-3.0.2" = {
-      name = "v8flags";
-      packageName = "v8flags";
-      version = "3.0.2";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/v8flags/-/v8flags-3.0.2.tgz";
-        sha512 = "6sgSKoFw1UpUPd3cFdF7QGnrH6tDeBgW1F3v9gy8gLY0mlbiBXq8soy8aQpY6xeeCjH5K+JvC62Acp7gtl7wWA==";
-      };
-    };
     "v8flags-3.1.1" = {
       name = "v8flags";
       packageName = "v8flags";
@@ -34419,7 +34617,7 @@ let
       packageName = "vfile";
       version = "1.4.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/vfile/-/vfile-1.4.0.tgz";
+        url = "http://registry.npmjs.org/vfile/-/vfile-1.4.0.tgz";
         sha1 = "c0fd6fa484f8debdb771f68c31ed75d88da97fe7";
       };
     };
@@ -34428,7 +34626,7 @@ let
       packageName = "vfile-find-down";
       version = "1.0.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/vfile-find-down/-/vfile-find-down-1.0.0.tgz";
+        url = "http://registry.npmjs.org/vfile-find-down/-/vfile-find-down-1.0.0.tgz";
         sha1 = "84a4d66d03513f6140a84e0776ef0848d4f0ad95";
       };
     };
@@ -34437,7 +34635,7 @@ let
       packageName = "vfile-find-up";
       version = "1.0.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/vfile-find-up/-/vfile-find-up-1.0.0.tgz";
+        url = "http://registry.npmjs.org/vfile-find-up/-/vfile-find-up-1.0.0.tgz";
         sha1 = "5604da6fe453b34350637984eb5fe4909e280390";
       };
     };
@@ -34446,7 +34644,7 @@ let
       packageName = "vfile-reporter";
       version = "1.5.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/vfile-reporter/-/vfile-reporter-1.5.0.tgz";
+        url = "http://registry.npmjs.org/vfile-reporter/-/vfile-reporter-1.5.0.tgz";
         sha1 = "21a7009bfe55e24df8ff432aa5bf6f6efa74e418";
       };
     };
@@ -34455,7 +34653,7 @@ let
       packageName = "vfile-sort";
       version = "1.0.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/vfile-sort/-/vfile-sort-1.0.0.tgz";
+        url = "http://registry.npmjs.org/vfile-sort/-/vfile-sort-1.0.0.tgz";
         sha1 = "17ee491ba43e8951bb22913fcff32a7dc4d234d4";
       };
     };
@@ -34720,13 +34918,13 @@ let
         sha1 = "13587190f34e72ba7a07ebbaa7e70ac147b1fb7d";
       };
     };
-    "vue-cli-plugin-apollo-0.16.6" = {
+    "vue-cli-plugin-apollo-0.17.3" = {
       name = "vue-cli-plugin-apollo";
       packageName = "vue-cli-plugin-apollo";
-      version = "0.16.6";
+      version = "0.17.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/vue-cli-plugin-apollo/-/vue-cli-plugin-apollo-0.16.6.tgz";
-        sha512 = "2GFJQg84BrdgLZXkvwxndlAljOvPOhoNVXrVChSTpiOgEu5JqPkVn71fAeVZ/OYzlcs+48trQQ32SXoHrJyQ0A==";
+        url = "https://registry.npmjs.org/vue-cli-plugin-apollo/-/vue-cli-plugin-apollo-0.17.3.tgz";
+        sha512 = "IMKGkmwVAF8uAy5ngbE0XYze6i9PGSAnByqvVgLgT4YsjUHMwfyUoyVJuAtfJPZG2G+fVpcwArhBhucAWXbSXw==";
       };
     };
     "walk-2.3.14" = {
@@ -34801,13 +34999,13 @@ let
         sha1 = "79691584d98607f5070bd3b70a40e6bb22e401eb";
       };
     };
-    "webassemblyjs-1.7.8" = {
+    "webassemblyjs-1.7.11" = {
       name = "webassemblyjs";
       packageName = "webassemblyjs";
-      version = "1.7.8";
+      version = "1.7.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/webassemblyjs/-/webassemblyjs-1.7.8.tgz";
-        sha512 = "7J64n2yTf2apgtRJypiHUFNRc2twQrMAFIWsm8u4qih7nG+sry2Bna1zq3qFI35fazIF1m42VGHHvdp9bBXmBA==";
+        url = "https://registry.npmjs.org/webassemblyjs/-/webassemblyjs-1.7.11.tgz";
+        sha512 = "vTwNncSEfuE51O1yHdcsino4LN1SYCiI4ws9OU1cImsqJ3vsydceDtzPcYXPFHm6Tie1ZH0HobXpYFExjronYw==";
       };
     };
     "webidl-conversions-2.0.1" = {
@@ -34999,13 +35197,13 @@ let
         sha512 = "QGkOQc8XL6Bt5PwnsExKBPuMKBxnGxWWW3fU55Xt4feHozMUhdUMaBCk290qpm/wG5u/RSKzwdAC4i51YigihA==";
       };
     };
-    "widest-line-2.0.0" = {
+    "widest-line-2.0.1" = {
       name = "widest-line";
       packageName = "widest-line";
-      version = "2.0.0";
+      version = "2.0.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/widest-line/-/widest-line-2.0.0.tgz";
-        sha1 = "0142a4e8a243f8882c0233aa0e0281aa76152273";
+        url = "https://registry.npmjs.org/widest-line/-/widest-line-2.0.1.tgz";
+        sha512 = "Ba5m9/Fa4Xt9eb2ELXt77JxVDV8w7qQrH0zS/TWSJdLyAwQjWoOzpzj5lwVftDz6n/EOu3tNACS84v509qwnJA==";
       };
     };
     "win-detect-browsers-1.0.2" = {
@@ -35990,13 +36188,13 @@ let
         sha512 = "/KbouQdKgnqxG6K3Tc8VBPAQLPbruQ7KkbinwR+ah507oOFobHnGs8kqj8oMfafY6rXInHdh7nC5YzicCR4Z0g==";
       };
     };
-    "yeoman-environment-2.3.3" = {
+    "yeoman-environment-2.3.4" = {
       name = "yeoman-environment";
       packageName = "yeoman-environment";
-      version = "2.3.3";
+      version = "2.3.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/yeoman-environment/-/yeoman-environment-2.3.3.tgz";
-        sha512 = "HBpXdNw8V66EwqIFt01rNhSgX33BOzgVb9CxpIvESvCI4ELeOSniB6gV6RXwrBur8kmHZCIAkYQYpib7Qxx8FQ==";
+        url = "https://registry.npmjs.org/yeoman-environment/-/yeoman-environment-2.3.4.tgz";
+        sha512 = "KLxE5ft/74Qj7h3AsQZv8G6MEEHYJwmD5F99nfOVaep3rBzCtbrJKkdqWc7bDV141Nr8UZZsIXmzc3IcCm6E2w==";
       };
     };
     "yn-2.0.0" = {
@@ -36035,13 +36233,13 @@ let
         sha512 = "Dhp/R0pqSHj3vPs5O1gVd9kZx5Iew2lqVcfJQOBHx3llM/dLea8vl9wSa9FK8wLdSBQJ6mmgKi9+Rk2DRH3i9Q==";
       };
     };
-    "zen-observable-0.8.9" = {
+    "zen-observable-0.8.11" = {
       name = "zen-observable";
       packageName = "zen-observable";
-      version = "0.8.9";
+      version = "0.8.11";
       src = fetchurl {
-        url = "https://registry.npmjs.org/zen-observable/-/zen-observable-0.8.9.tgz";
-        sha512 = "Y9kPzjGvIZ5jchSlqlCpBW3I82zBBL4z+ulXDRVA1NwsKzjt5kwAi+gOYIy0htNkfuehGZZtP5mRXHRV6TjDWw==";
+        url = "https://registry.npmjs.org/zen-observable/-/zen-observable-0.8.11.tgz";
+        sha512 = "N3xXQVr4L61rZvGMpWe8XoCGX8vhU35dPyQ4fm5CY/KDlG0F75un14hjbckPXTDuKUY6V0dqR2giT6xN8Y4GEQ==";
       };
     };
     "zen-observable-ts-0.8.10" = {
@@ -36113,10 +36311,10 @@ in
   alloy = nodeEnv.buildNodePackage {
     name = "alloy";
     packageName = "alloy";
-    version = "1.13.3";
+    version = "1.13.4";
     src = fetchurl {
-      url = "https://registry.npmjs.org/alloy/-/alloy-1.13.3.tgz";
-      sha512 = "IU15/1dufp+iI9FmXshIo9z9x4HmDk5Wslo2VkHlA1k8pYzHQ3XapRflDkEdV1tZ9LXTEMJW40t8mnWLjZjDqg==";
+      url = "https://registry.npmjs.org/alloy/-/alloy-1.13.4.tgz";
+      sha512 = "EjH9edCzDZzUFj5Cko6Za/nd9pQsxwL/kza+EI8sfH0UFA8YYuFBriOITnE/T9E4bJC3kEJEakGKaag0CcGWbw==";
     };
     dependencies = [
       sources."JSV-4.0.2"
@@ -36171,7 +36369,7 @@ in
         ];
       })
       sources."globals-9.18.0"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."has-ansi-2.0.0"
       sources."has-color-0.1.7"
       sources."home-or-tmp-2.0.0"
@@ -36283,16 +36481,12 @@ in
       sources."fast-deep-equal-1.1.0"
       sources."fast-json-stable-stringify-2.0.0"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."fs-extra-0.26.7"
       sources."fs.realpath-1.0.0"
       sources."getpass-0.1.7"
       sources."glob-6.0.4"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-schema-2.0.0"
       sources."har-validator-5.1.0"
       sources."http-signature-1.2.0"
@@ -36308,8 +36502,8 @@ in
       sources."jsonfile-2.4.0"
       sources."jsprim-1.4.1"
       sources."klaw-1.3.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
       sources."mkdirp-0.5.1"
@@ -36334,7 +36528,7 @@ in
       })
       sources."safe-buffer-5.1.2"
       sources."safer-buffer-2.1.2"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."string_decoder-0.10.31"
       sources."tmp-0.0.28"
       (sources."touch-0.0.3" // {
@@ -36368,7 +36562,7 @@ in
       sha512 = "MMiK5sFfIocNMWCc5PshUCAe6aY4P13/GCmSwudOziA/pFdQMHU8jhu+jU2SSWFug4K1ugeuCwtMXe43oL0PhQ==";
     };
     dependencies = [
-      sources."@types/node-8.10.36"
+      sources."@types/node-8.10.37"
       sources."JSV-4.0.2"
       sources."adal-node-0.1.28"
       sources."ajv-5.5.2"
@@ -36431,11 +36625,11 @@ in
           sources."request-2.74.0"
         ];
       })
-      sources."azure-arm-resource-7.0.0"
+      sources."azure-arm-resource-7.0.1"
       sources."azure-arm-servermanagement-1.1.0"
       sources."azure-arm-storage-5.2.0"
       sources."azure-arm-trafficmanager-1.1.0-preview"
-      sources."azure-arm-website-5.3.0"
+      sources."azure-arm-website-5.5.0"
       sources."azure-asm-compute-0.18.0"
       sources."azure-asm-hdinsight-0.10.2"
       sources."azure-asm-mgmt-0.10.1"
@@ -36470,13 +36664,13 @@ in
         ];
       })
       sources."azure-servicefabric-2.0.0"
-      (sources."azure-storage-2.10.1" // {
+      (sources."azure-storage-2.10.2" // {
         dependencies = [
-          sources."extend-1.2.1"
           sources."readable-stream-2.0.6"
           sources."underscore-1.8.3"
           sources."validator-9.4.1"
           sources."xml2js-0.2.8"
+          sources."xmlbuilder-9.0.7"
         ];
       })
       sources."balanced-match-1.0.0"
@@ -36607,8 +36801,8 @@ in
       sources."lodash-4.17.11"
       sources."map-stream-0.1.0"
       sources."md5.js-1.3.4"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
       sources."mkdirp-0.5.1"
@@ -36675,11 +36869,7 @@ in
           sources."assert-plus-1.0.0"
           sources."aws-sign2-0.7.0"
           sources."caseless-0.12.0"
-          (sources."form-data-2.3.2" // {
-            dependencies = [
-              sources."combined-stream-1.0.6"
-            ];
-          })
+          sources."form-data-2.3.3"
           sources."har-validator-5.1.0"
           sources."http-signature-1.2.0"
           sources."oauth-sign-0.9.0"
@@ -36701,7 +36891,7 @@ in
           sources."asn1-0.1.11"
         ];
       })
-      (sources."sshpk-1.15.1" // {
+      (sources."sshpk-1.15.2" // {
         dependencies = [
           sources."assert-plus-1.0.0"
         ];
@@ -36762,6 +36952,76 @@ in
     production = true;
     bypassCache = true;
   };
+  azure-functions-core-tools = nodeEnv.buildNodePackage {
+    name = "azure-functions-core-tools";
+    packageName = "azure-functions-core-tools";
+    version = "2.1.748";
+    src = fetchurl {
+      url = "https://registry.npmjs.org/azure-functions-core-tools/-/azure-functions-core-tools-2.1.748.tgz";
+      sha512 = "Zi4/o7479cSZ0Ln5Ygf2FPdN5G2uXOOnoPG/8GGBQkdCkOtYECiOy5Py4A21MHJ/XvfIY4cRH7EVkbzZN5Cwwg==";
+    };
+    dependencies = [
+      sources."agent-base-4.2.1"
+      sources."ansi-styles-3.2.1"
+      sources."balanced-match-1.0.0"
+      sources."big-integer-1.6.36"
+      sources."binary-0.3.0"
+      sources."bluebird-3.4.7"
+      sources."brace-expansion-1.1.11"
+      sources."buffer-indexof-polyfill-1.0.1"
+      sources."buffers-0.1.1"
+      sources."chainsaw-0.1.0"
+      sources."chalk-2.4.1"
+      sources."color-convert-1.9.3"
+      sources."color-name-1.1.3"
+      sources."command-exists-1.2.8"
+      sources."concat-map-0.0.1"
+      sources."core-util-is-1.0.2"
+      sources."debug-3.2.6"
+      sources."duplexer2-0.1.4"
+      sources."es6-promise-4.2.5"
+      sources."es6-promisify-5.0.0"
+      sources."escape-string-regexp-1.0.5"
+      sources."fs.realpath-1.0.0"
+      sources."fstream-1.0.11"
+      sources."glob-7.1.3"
+      sources."graceful-fs-4.1.15"
+      sources."has-flag-3.0.0"
+      sources."https-proxy-agent-2.2.1"
+      sources."inflight-1.0.6"
+      sources."inherits-2.0.3"
+      sources."isarray-1.0.0"
+      sources."listenercount-1.0.1"
+      sources."minimatch-3.0.4"
+      sources."minimist-0.0.8"
+      sources."mkdirp-0.5.1"
+      sources."ms-2.1.1"
+      sources."once-1.4.0"
+      sources."os-tmpdir-1.0.2"
+      sources."path-is-absolute-1.0.1"
+      sources."process-nextick-args-2.0.0"
+      sources."progress-2.0.1"
+      sources."readable-stream-2.3.6"
+      sources."rimraf-2.6.2"
+      sources."safe-buffer-5.1.2"
+      sources."setimmediate-1.0.5"
+      sources."string_decoder-1.1.1"
+      sources."supports-color-5.5.0"
+      sources."tmp-0.0.33"
+      sources."traverse-0.3.9"
+      sources."unzipper-0.9.4"
+      sources."util-deprecate-1.0.2"
+      sources."wrappy-1.0.2"
+    ];
+    buildInputs = globalBuildInputs;
+    meta = {
+      description = "Azure Functions Core Tools";
+      homepage = "https://github.com/Azure/azure-functions-core-tools#readme";
+      license = "MIT";
+    };
+    production = true;
+    bypassCache = true;
+  };
   bower = nodeEnv.buildNodePackage {
     name = "bower";
     packageName = "bower";
@@ -36811,7 +37071,7 @@ in
       sources."find-up-1.1.2"
       (sources."fs-extra-0.26.7" // {
         dependencies = [
-          sources."graceful-fs-4.1.11"
+          sources."graceful-fs-4.1.15"
         ];
       })
       sources."fs.realpath-1.0.0"
@@ -36830,24 +37090,24 @@ in
       sources."is-utf8-0.2.1"
       (sources."jsonfile-2.4.0" // {
         dependencies = [
-          sources."graceful-fs-4.1.11"
+          sources."graceful-fs-4.1.15"
         ];
       })
       (sources."klaw-1.3.1" // {
         dependencies = [
-          sources."graceful-fs-4.1.11"
+          sources."graceful-fs-4.1.15"
         ];
       })
       (sources."load-json-file-1.1.0" // {
         dependencies = [
-          sources."graceful-fs-4.1.11"
+          sources."graceful-fs-4.1.15"
         ];
       })
       sources."lodash-4.2.1"
       sources."loud-rejection-1.6.0"
       sources."map-obj-1.0.1"
       sources."meow-3.7.0"
-      sources."mime-db-1.36.0"
+      sources."mime-db-1.37.0"
       sources."minimatch-3.0.4"
       sources."minimist-1.2.0"
       (sources."mkdirp-0.5.1" // {
@@ -36867,7 +37127,7 @@ in
       sources."path-is-absolute-1.0.1"
       (sources."path-type-1.1.0" // {
         dependencies = [
-          sources."graceful-fs-4.1.11"
+          sources."graceful-fs-4.1.15"
         ];
       })
       sources."pify-2.3.0"
@@ -36891,7 +37151,7 @@ in
       sources."spdx-correct-3.0.2"
       sources."spdx-exceptions-2.2.0"
       sources."spdx-expression-parse-3.0.0"
-      sources."spdx-license-ids-3.0.1"
+      sources."spdx-license-ids-3.0.2"
       sources."sprintf-js-1.0.3"
       sources."strip-bom-2.0.0"
       sources."strip-indent-1.0.1"
@@ -36923,8 +37183,9 @@ in
     };
     dependencies = [
       sources."JSONStream-1.3.5"
-      sources."acorn-6.0.2"
-      sources."acorn-node-1.6.0"
+      sources."acorn-6.0.3"
+      sources."acorn-dynamic-import-4.0.0"
+      sources."acorn-node-1.6.2"
       sources."acorn-walk-6.1.0"
       sources."array-filter-0.0.1"
       sources."array-map-0.0.0"
@@ -37197,7 +37458,7 @@ in
         dependencies = [
           sources."minimist-0.0.8"
           sources."mkdirp-0.5.1"
-          sources."thunky-1.0.2"
+          sources."thunky-1.0.3"
         ];
       })
       sources."fs.realpath-1.0.0"
@@ -37205,7 +37466,7 @@ in
       sources."get-stdin-4.0.1"
       sources."glob-7.1.3"
       sources."got-1.2.2"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."has-ansi-1.0.3"
       sources."hat-0.0.3"
       sources."hawk-0.10.2"
@@ -37397,7 +37658,7 @@ in
       sources."spdx-correct-3.0.2"
       sources."spdx-exceptions-2.2.0"
       sources."spdx-expression-parse-3.0.0"
-      sources."spdx-license-ids-3.0.1"
+      sources."spdx-license-ids-3.0.2"
       sources."speedometer-0.1.4"
       sources."srt2vtt-1.3.1"
       sources."stream-transcoder-0.0.5"
@@ -37626,9 +37887,10 @@ in
       sources."abbrev-1.1.1"
       sources."accepts-1.3.5"
       sources."acorn-5.7.3"
-      (sources."acorn-node-1.6.0" // {
+      sources."acorn-dynamic-import-4.0.0"
+      (sources."acorn-node-1.6.2" // {
         dependencies = [
-          sources."acorn-6.0.2"
+          sources."acorn-6.0.3"
         ];
       })
       sources."acorn-walk-6.1.0"
@@ -37820,11 +38082,7 @@ in
       sources."finalhandler-1.1.1"
       sources."foreach-2.0.5"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."forwarded-0.1.2"
       sources."fresh-0.5.2"
       sources."fs.realpath-1.0.0"
@@ -37836,7 +38094,7 @@ in
       sources."glob-5.0.15"
       sources."global-dirs-0.1.1"
       sources."got-6.7.1"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-schema-2.0.0"
       sources."har-validator-5.1.0"
       sources."has-1.0.3"
@@ -37930,8 +38188,8 @@ in
       sources."methods-1.1.2"
       sources."miller-rabin-4.0.1"
       sources."mime-1.4.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimalistic-assert-1.0.1"
       sources."minimalistic-crypto-utils-1.0.1"
       sources."minimatch-3.0.4"
@@ -38064,8 +38322,8 @@ in
       sources."spdx-correct-3.0.2"
       sources."spdx-exceptions-2.2.0"
       sources."spdx-expression-parse-3.0.0"
-      sources."spdx-license-ids-3.0.1"
-      sources."sshpk-1.15.1"
+      sources."spdx-license-ids-3.0.2"
+      sources."sshpk-1.15.2"
       sources."statuses-1.4.0"
       sources."stream-browserify-2.0.1"
       sources."stream-buffers-2.2.0"
@@ -38131,7 +38389,7 @@ in
       sources."verror-1.10.0"
       sources."vm-browserify-0.0.4"
       sources."which-1.3.1"
-      sources."widest-line-2.0.0"
+      sources."widest-line-2.0.1"
       sources."win-release-1.1.1"
       sources."wrappy-1.0.2"
       sources."write-file-atomic-2.3.0"
@@ -38174,7 +38432,7 @@ in
       sources."@cycle/run-3.4.0"
       sources."@cycle/time-0.10.1"
       sources."@types/cookiejar-2.1.0"
-      sources."@types/node-10.11.7"
+      sources."@types/node-10.12.2"
       sources."@types/superagent-3.8.2"
       sources."ansi-escapes-3.1.0"
       sources."ansi-regex-2.1.1"
@@ -38192,7 +38450,7 @@ in
       sources."color-convert-1.9.3"
       sources."color-name-1.1.3"
       sources."combine-errors-3.0.3"
-      sources."combined-stream-1.0.6"
+      sources."combined-stream-1.0.7"
       sources."component-emitter-1.2.1"
       sources."cookiejar-2.1.2"
       sources."core-util-is-1.0.2"
@@ -38213,7 +38471,7 @@ in
       sources."extend-3.0.2"
       sources."external-editor-2.2.0"
       sources."figures-2.0.0"
-      sources."form-data-2.3.2"
+      sources."form-data-2.3.3"
       sources."formidable-1.2.1"
       sources."has-ansi-2.0.0"
       sources."has-flag-3.0.0"
@@ -38240,8 +38498,8 @@ in
       sources."lru-cache-4.1.3"
       sources."methods-1.1.2"
       sources."mime-1.6.0"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."mimic-fn-1.2.0"
       sources."minimist-1.2.0"
       sources."ms-2.1.1"
@@ -38305,10 +38563,10 @@ in
   create-react-app = nodeEnv.buildNodePackage {
     name = "create-react-app";
     packageName = "create-react-app";
-    version = "2.0.4";
+    version = "2.1.1";
     src = fetchurl {
-      url = "https://registry.npmjs.org/create-react-app/-/create-react-app-2.0.4.tgz";
-      sha512 = "8FP0i8GNAVADIH6zc1INmpkxDZADi+wWNOveq/ja/vjpkfgXcHd0bglNC5mg03cVmJUZWm/Am9qNY1IsUW+PGQ==";
+      url = "https://registry.npmjs.org/create-react-app/-/create-react-app-2.1.1.tgz";
+      sha512 = "ZCDwk0joko6JqKscWEaNPs32GyxVQZOIXxa7KmzZwnxiUyWfsWoiXfbivK5KyPnUT8AYztexCH9VI0tBTiqlsg==";
     };
     dependencies = [
       sources."ansi-regex-2.1.1"
@@ -38332,7 +38590,7 @@ in
       sources."fstream-1.0.11"
       sources."fstream-ignore-1.0.5"
       sources."glob-7.1.3"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."has-ansi-2.0.0"
       sources."hyperquest-2.1.3"
       sources."inflight-1.0.6"
@@ -38407,7 +38665,7 @@ in
       sources."cross-spawn-5.1.0"
       sources."escape-string-regexp-1.0.5"
       sources."fs-extra-4.0.3"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."has-flag-3.0.0"
       sources."isexe-2.0.0"
       sources."jsonfile-4.0.0"
@@ -38618,11 +38876,7 @@ in
       sources."for-in-1.0.2"
       sources."for-own-0.1.5"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."from2-2.3.0"
       sources."fs.realpath-1.0.0"
       sources."get-stream-3.0.0"
@@ -38633,7 +38887,7 @@ in
       sources."global-4.3.2"
       sources."global-dirs-0.1.1"
       sources."got-6.7.1"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-schema-2.0.0"
       sources."har-validator-5.1.0"
       sources."has-flag-3.0.0"
@@ -38722,8 +38976,8 @@ in
       sources."merkle-tree-stream-3.0.3"
       sources."micromatch-2.3.11"
       sources."mime-2.3.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."min-document-2.19.0"
       sources."minimatch-3.0.4"
       sources."minimist-1.2.0"
@@ -38742,7 +38996,7 @@ in
       sources."mutexify-1.2.0"
       sources."nan-2.11.1"
       sources."nanoassert-1.1.0"
-      sources."nanobus-4.3.4"
+      sources."nanobus-4.3.5"
       sources."nanoscheduler-1.0.3"
       sources."nanotiming-7.3.1"
       sources."ncp-1.0.1"
@@ -38790,7 +39044,7 @@ in
       sources."random-access-file-2.0.1"
       sources."random-access-memory-3.0.0"
       sources."random-access-storage-1.3.0"
-      (sources."randomatic-3.1.0" // {
+      (sources."randomatic-3.1.1" // {
         dependencies = [
           sources."is-number-4.0.0"
           sources."kind-of-6.0.2"
@@ -38835,7 +39089,7 @@ in
       sources."sorted-indexof-1.0.0"
       sources."sparse-bitfield-3.0.3"
       sources."speedometer-1.1.0"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."stack-trace-0.0.10"
       sources."stream-collector-1.0.1"
       sources."stream-each-1.2.3"
@@ -38858,7 +39112,7 @@ in
       sources."supports-color-5.5.0"
       sources."term-size-1.2.0"
       sources."throttle-1.0.3"
-      sources."thunky-1.0.2"
+      sources."thunky-1.0.3"
       sources."timed-out-4.0.1"
       sources."to-buffer-1.1.1"
       (sources."toiletdb-1.4.1" // {
@@ -38889,7 +39143,7 @@ in
       sources."varint-3.0.1"
       sources."verror-1.10.0"
       sources."which-1.3.1"
-      sources."widest-line-2.0.0"
+      sources."widest-line-2.0.1"
       (sources."winston-2.1.1" // {
         dependencies = [
           sources."async-1.0.0"
@@ -38985,7 +39239,7 @@ in
       sources."fresh-0.2.4"
       sources."from-0.1.7"
       sources."hiredis-0.4.1"
-      sources."http-parser-js-0.4.13"
+      sources."http-parser-js-0.5.0"
       sources."inherits-2.0.3"
       sources."ini-1.3.5"
       sources."ipaddr.js-1.0.5"
@@ -39004,8 +39258,8 @@ in
       sources."merge-descriptors-0.0.2"
       sources."methods-1.1.2"
       sources."mime-1.2.11"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimist-0.0.10"
       sources."ms-0.7.0"
       sources."nan-2.11.1"
@@ -39105,7 +39359,7 @@ in
       sources."bytewise-core-1.2.3"
       sources."cookie-signature-1.1.0"
       sources."core-util-is-1.0.2"
-      sources."cors-2.8.4"
+      sources."cors-2.8.5"
       sources."deferred-leveldown-0.2.0"
       sources."docker-parse-image-3.0.1"
       (sources."duplexify-3.6.1" // {
@@ -39258,7 +39512,7 @@ in
       sources."assert-plus-1.0.0"
       sources."async-2.6.1"
       sources."asynckit-0.4.0"
-      sources."aws-sdk-2.334.0"
+      sources."aws-sdk-2.348.0"
       sources."aws-sign2-0.7.0"
       sources."aws4-1.8.0"
       sources."base64-js-1.3.0"
@@ -39279,11 +39533,7 @@ in
       sources."fast-deep-equal-1.1.0"
       sources."fast-json-stable-stringify-2.0.0"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."getpass-0.1.7"
       sources."har-schema-2.0.0"
       sources."har-validator-5.1.0"
@@ -39302,8 +39552,8 @@ in
       sources."jsprim-1.4.1"
       sources."lodash-4.17.11"
       sources."lossless-json-1.0.3"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimist-0.0.10"
       sources."oauth-sign-0.9.0"
       sources."optimist-0.6.1"
@@ -39317,11 +39567,11 @@ in
           sources."uuid-3.3.2"
         ];
       })
-      sources."requestretry-3.0.1"
+      sources."requestretry-3.0.2"
       sources."safe-buffer-5.1.2"
       sources."safer-buffer-2.1.2"
       sources."sax-1.2.1"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."through-2.3.8"
       (sources."tough-cookie-2.4.3" // {
         dependencies = [
@@ -39494,11 +39744,7 @@ in
       sources."firstline-1.2.1"
       sources."for-in-1.0.2"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."fragment-cache-0.2.1"
       sources."fs-extra-0.30.0"
       sources."fs.realpath-1.0.0"
@@ -39512,7 +39758,7 @@ in
           sources."is-glob-3.1.0"
         ];
       })
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-schema-2.0.0"
       sources."har-validator-5.1.0"
       sources."has-flag-2.0.0"
@@ -39559,8 +39805,8 @@ in
       sources."map-cache-0.2.2"
       sources."map-visit-1.0.0"
       sources."micromatch-3.1.10"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimatch-3.0.4"
       sources."minimist-1.2.0"
       sources."mixin-deep-1.3.1"
@@ -39660,7 +39906,7 @@ in
       sources."source-map-url-0.4.0"
       sources."split-1.0.1"
       sources."split-string-3.1.0"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       (sources."static-extend-0.1.2" // {
         dependencies = [
           sources."define-property-0.2.5"
@@ -39807,7 +40053,7 @@ in
       sources."get-stream-3.0.0"
       sources."globals-9.18.0"
       sources."got-7.1.0"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."has-ansi-3.0.0"
       sources."has-flag-3.0.0"
       sources."has-symbol-support-x-1.4.2"
@@ -39929,7 +40175,7 @@ in
       sources."spdx-correct-3.0.2"
       sources."spdx-exceptions-2.2.0"
       sources."spdx-expression-parse-3.0.0"
-      sources."spdx-license-ids-3.0.1"
+      sources."spdx-license-ids-3.0.2"
       (sources."string-width-2.1.1" // {
         dependencies = [
           sources."strip-ansi-4.0.0"
@@ -39973,17 +40219,17 @@ in
   eslint = nodeEnv.buildNodePackage {
     name = "eslint";
     packageName = "eslint";
-    version = "5.7.0";
+    version = "5.8.0";
     src = fetchurl {
-      url = "https://registry.npmjs.org/eslint/-/eslint-5.7.0.tgz";
-      sha512 = "zYCeFQahsxffGl87U2aJ7DPyH8CbWgxBC213Y8+TCanhUTf2gEvfq3EKpHmEcozTLyPmGe9LZdMAwC/CpJBM5A==";
+      url = "https://registry.npmjs.org/eslint/-/eslint-5.8.0.tgz";
+      sha512 = "Zok6Bru3y2JprqTNm14mgQ15YQu/SMDkWdnmHfFg770DIUlmMFd/gqqzCHekxzjHZJxXv3tmTpH0C1icaYJsRQ==";
     };
     dependencies = [
       sources."@babel/code-frame-7.0.0"
       sources."@babel/highlight-7.0.0"
-      sources."acorn-5.7.3"
-      sources."acorn-jsx-4.1.1"
-      sources."ajv-6.5.4"
+      sources."acorn-6.0.3"
+      sources."acorn-jsx-5.0.0"
+      sources."ajv-6.5.5"
       sources."ansi-escapes-3.1.0"
       sources."ansi-regex-3.0.0"
       sources."ansi-styles-3.2.1"
@@ -40012,7 +40258,7 @@ in
       sources."eslint-scope-4.0.0"
       sources."eslint-utils-1.3.1"
       sources."eslint-visitor-keys-1.0.0"
-      sources."espree-4.0.0"
+      sources."espree-4.1.0"
       sources."esprima-4.0.1"
       sources."esquery-1.0.1"
       sources."esrecurse-4.2.1"
@@ -40030,7 +40276,7 @@ in
       sources."glob-7.1.3"
       sources."globals-11.8.0"
       sources."globby-5.0.0"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."has-flag-3.0.0"
       sources."iconv-lite-0.4.24"
       sources."ignore-4.0.6"
@@ -40072,7 +40318,7 @@ in
       sources."pinkie-promise-2.0.1"
       sources."pluralize-7.0.0"
       sources."prelude-ls-1.1.2"
-      sources."progress-2.0.0"
+      sources."progress-2.0.1"
       sources."punycode-2.1.1"
       sources."regexpp-2.0.1"
       sources."require-uncached-1.0.3"
@@ -40124,9 +40370,9 @@ in
     dependencies = [
       sources."@babel/code-frame-7.0.0"
       sources."@babel/highlight-7.0.0"
-      sources."acorn-5.7.3"
-      sources."acorn-jsx-4.1.1"
-      sources."ajv-6.5.4"
+      sources."acorn-6.0.3"
+      sources."acorn-jsx-5.0.0"
+      sources."ajv-6.5.5"
       sources."ansi-escapes-3.1.0"
       sources."ansi-regex-3.0.0"
       sources."ansi-styles-3.2.1"
@@ -40152,11 +40398,11 @@ in
       sources."del-2.2.2"
       sources."doctrine-2.1.0"
       sources."escape-string-regexp-1.0.5"
-      sources."eslint-5.7.0"
+      sources."eslint-5.8.0"
       sources."eslint-scope-4.0.0"
       sources."eslint-utils-1.3.1"
       sources."eslint-visitor-keys-1.0.0"
-      sources."espree-4.0.0"
+      sources."espree-4.1.0"
       sources."esprima-4.0.1"
       sources."esquery-1.0.1"
       sources."esrecurse-4.2.1"
@@ -40174,7 +40420,7 @@ in
       sources."glob-7.1.3"
       sources."globals-11.8.0"
       sources."globby-5.0.0"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."has-flag-3.0.0"
       sources."iconv-lite-0.4.24"
       sources."ignore-4.0.6"
@@ -40218,7 +40464,7 @@ in
       sources."pinkie-promise-2.0.1"
       sources."pluralize-7.0.0"
       sources."prelude-ls-1.1.2"
-      sources."progress-2.0.0"
+      sources."progress-2.0.1"
       sources."punycode-2.1.1"
       sources."regexpp-2.0.1"
       sources."require-uncached-1.0.3"
@@ -40328,15 +40574,11 @@ in
       sources."fd-slicer-1.0.1"
       sources."find-up-1.1.2"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."fs-extra-1.0.0"
       sources."get-stdin-4.0.1"
       sources."getpass-0.1.7"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-schema-2.0.0"
       sources."har-validator-5.1.0"
       sources."has-ansi-2.0.0"
@@ -40375,8 +40617,8 @@ in
       sources."loud-rejection-1.6.0"
       sources."map-obj-1.0.1"
       sources."meow-3.7.0"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."mimic-fn-1.2.0"
       sources."minimist-1.2.0"
       (sources."mkdirp-0.5.1" // {
@@ -40433,8 +40675,8 @@ in
       sources."spdx-correct-3.0.2"
       sources."spdx-exceptions-2.2.0"
       sources."spdx-expression-parse-3.0.0"
-      sources."spdx-license-ids-3.0.1"
-      sources."sshpk-1.15.1"
+      sources."spdx-license-ids-3.0.2"
+      sources."sshpk-1.15.2"
       sources."string_decoder-1.1.1"
       sources."strip-ansi-3.0.1"
       sources."strip-bom-2.0.0"
@@ -40604,7 +40846,7 @@ in
       sources."glob-7.1.3"
       sources."glob-base-0.3.0"
       sources."glob-parent-2.0.0"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       (sources."has-value-1.0.0" // {
         dependencies = [
           sources."isobject-3.0.1"
@@ -40737,7 +40979,7 @@ in
       sources."process-nextick-args-2.0.0"
       sources."prompt-0.2.14"
       sources."ps-tree-0.0.3"
-      (sources."randomatic-3.1.0" // {
+      (sources."randomatic-3.1.1" // {
         dependencies = [
           sources."is-number-4.0.0"
           sources."kind-of-6.0.2"
@@ -40923,7 +41165,7 @@ in
       sources."microee-0.0.6"
       sources."minilog-3.1.0"
       sources."ms-2.1.1"
-      sources."simple-git-1.105.0"
+      sources."simple-git-1.106.0"
       sources."tabtab-git+https://github.com/mixu/node-tabtab.git"
     ];
     buildInputs = globalBuildInputs;
@@ -40947,9 +41189,11 @@ in
       sources."asyncmemo-1.0.0"
       sources."chloride-2.2.10"
       sources."chloride-test-1.2.2"
+      sources."colors-0.5.1"
       sources."deep-equal-1.0.1"
       sources."deep-extend-0.6.0"
       sources."diff-3.5.0"
+      sources."discontinuous-range-1.0.0"
       sources."ed2curve-0.1.4"
       sources."emoji-named-characters-1.0.2"
       sources."explain-error-1.0.4"
@@ -40959,12 +41203,13 @@ in
       sources."git-remote-ssb-2.0.4"
       sources."git-ssb-web-2.8.0"
       sources."hashlru-2.2.1"
-      sources."highlight.js-9.13.0"
+      sources."highlight.js-9.13.1"
       sources."increment-buffer-1.0.1"
       sources."inherits-2.0.3"
       sources."ini-1.3.5"
       sources."ip-1.1.5"
-      sources."is-electron-2.1.0"
+      sources."is-canonical-base64-1.1.1"
+      sources."is-electron-2.2.0"
       sources."is-my-ip-valid-1.0.0"
       sources."is-my-json-valid-2.19.0"
       sources."is-property-1.0.2"
@@ -40977,8 +41222,8 @@ in
       sources."libsodium-wrappers-0.7.3"
       sources."looper-4.0.0"
       sources."lrucache-1.0.3"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimist-1.2.0"
       (sources."mkdirp-0.5.1" // {
         dependencies = [
@@ -40986,12 +41231,16 @@ in
         ];
       })
       sources."moment-2.22.2"
+      sources."moo-0.4.3"
       sources."multicb-1.2.2"
-      sources."multiserver-1.13.5"
+      sources."multiserver-1.13.7"
+      sources."multiserver-address-1.0.1"
       sources."muxrpc-6.4.1"
       sources."nan-2.11.1"
+      sources."nearley-2.15.1"
       sources."node-gyp-build-3.5.0"
       sources."node-polyglot-1.0.0"
+      sources."nomnom-1.6.2"
       sources."non-private-ip-1.4.4"
       sources."options-0.0.6"
       sources."os-homedir-1.0.2"
@@ -41044,9 +41293,12 @@ in
         ];
       })
       sources."pull-ws-3.3.1"
+      sources."railroad-diagrams-1.0.0"
+      sources."randexp-0.4.6"
       sources."rc-1.2.8"
       sources."relative-url-1.0.2"
       sources."remove-markdown-0.1.0"
+      sources."ret-0.1.15"
       sources."safe-buffer-5.1.2"
       sources."secret-handshake-1.1.14"
       sources."semver-5.6.0"
@@ -41065,7 +41317,7 @@ in
       sources."split-buffer-1.0.0"
       sources."ssb-avatar-0.2.0"
       sources."ssb-client-4.6.0"
-      sources."ssb-config-2.3.5"
+      sources."ssb-config-2.3.7"
       sources."ssb-git-0.5.0"
       sources."ssb-git-repo-2.8.3"
       sources."ssb-issues-1.0.0"
@@ -41083,7 +41335,7 @@ in
       })
       sources."ssb-msgs-5.2.0"
       sources."ssb-pull-requests-1.0.0"
-      sources."ssb-ref-2.12.0"
+      sources."ssb-ref-2.13.6"
       (sources."stream-to-pull-stream-1.7.2" // {
         dependencies = [
           sources."looper-3.0.0"
@@ -41094,6 +41346,7 @@ in
       sources."tweetnacl-0.14.5"
       sources."tweetnacl-auth-0.3.1"
       sources."ultron-1.0.2"
+      sources."underscore-1.4.4"
       sources."ws-1.1.5"
       sources."xtend-4.0.1"
     ];
@@ -41126,10 +41379,10 @@ in
   graphql-cli = nodeEnv.buildNodePackage {
     name = "graphql-cli";
     packageName = "graphql-cli";
-    version = "2.16.7";
+    version = "2.17.0";
     src = fetchurl {
-      url = "https://registry.npmjs.org/graphql-cli/-/graphql-cli-2.16.7.tgz";
-      sha512 = "I1kkJ9mqgctjOHDTo3bg7CLpZDeuLrOhKeNmohWhka2bWb0jf5T9IspHLDDTIEsOB56KEnvW2fUwRsTFHJK2HQ==";
+      url = "https://registry.npmjs.org/graphql-cli/-/graphql-cli-2.17.0.tgz";
+      sha512 = "K82gG79pA3G8GzMeqFq5+kkdZi7K6UWlvmrWLuGaIvo8F1wdHAKDvfexjRGb5CPisqAJqQqbsGsfrg7If488kA==";
     };
     dependencies = [
       sources."@babel/generator-7.0.0-beta.38"
@@ -41224,11 +41477,7 @@ in
       sources."cookie-signature-1.0.6"
       sources."core-js-2.5.7"
       sources."core-util-is-1.0.2"
-      (sources."cosmiconfig-3.1.0" // {
-        dependencies = [
-          sources."parse-json-3.0.0"
-        ];
-      })
+      sources."cosmiconfig-3.1.0"
       sources."create-error-class-3.0.2"
       (sources."cross-fetch-2.2.2" // {
         dependencies = [
@@ -41299,11 +41548,7 @@ in
       sources."find-0.2.9"
       sources."find-up-2.1.0"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."format-util-1.0.3"
       sources."forwarded-0.1.2"
       sources."fresh-0.5.2"
@@ -41317,7 +41562,7 @@ in
       sources."global-modules-1.0.0"
       sources."global-prefix-1.0.2"
       sources."got-6.7.1"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."graphcool-json-schema-1.2.1"
       (sources."graphcool-yml-0.4.15" // {
         dependencies = [
@@ -41338,17 +41583,16 @@ in
           sources."lodash-4.17.5"
         ];
       })
-      sources."graphql-config-2.0.1"
-      sources."graphql-config-extension-graphcool-1.0.8"
-      sources."graphql-config-extension-openapi-1.0.6"
-      sources."graphql-config-extension-prisma-0.2.1"
-      sources."graphql-import-0.4.5"
-      (sources."graphql-playground-html-1.5.5" // {
+      (sources."graphql-config-2.2.1" // {
         dependencies = [
-          sources."graphql-config-2.0.0"
+          sources."graphql-import-0.7.1"
         ];
       })
-      sources."graphql-playground-middleware-express-1.6.2"
+      sources."graphql-config-extension-graphcool-1.0.11"
+      sources."graphql-config-extension-prisma-0.2.5"
+      sources."graphql-import-0.4.5"
+      sources."graphql-playground-html-1.6.4"
+      sources."graphql-playground-middleware-express-1.7.6"
       sources."graphql-request-1.8.2"
       sources."graphql-schema-linter-0.1.1"
       sources."graphql-static-binding-0.9.3"
@@ -41436,7 +41680,11 @@ in
       sources."jws-3.1.5"
       sources."latest-version-3.1.0"
       sources."lcid-1.0.0"
-      sources."load-json-file-2.0.0"
+      (sources."load-json-file-2.0.0" // {
+        dependencies = [
+          sources."parse-json-2.2.0"
+        ];
+      })
       sources."locate-path-2.0.0"
       sources."lodash-4.17.11"
       sources."lodash.get-4.4.2"
@@ -41463,8 +41711,8 @@ in
       sources."merge-descriptors-1.0.1"
       sources."methods-1.1.2"
       sources."mime-1.4.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."mimic-fn-1.2.0"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
@@ -41475,7 +41723,7 @@ in
       sources."nice-try-1.0.5"
       sources."no-case-2.3.2"
       sources."node-fetch-2.2.0"
-      sources."node-request-by-swagger-1.1.3"
+      sources."node-request-by-swagger-1.1.4"
       sources."normalize-package-data-2.4.0"
       sources."npm-path-2.0.4"
       sources."npm-paths-1.0.0"
@@ -41505,7 +41753,7 @@ in
       sources."package-json-4.0.1"
       sources."param-case-2.1.1"
       sources."parse-github-url-1.0.2"
-      sources."parse-json-2.2.0"
+      sources."parse-json-3.0.0"
       sources."parse-passwd-1.0.0"
       sources."parseurl-1.3.2"
       sources."pascal-case-2.0.1"
@@ -41519,11 +41767,12 @@ in
       sources."performance-now-2.1.0"
       sources."pify-2.3.0"
       sources."prepend-http-1.0.4"
-      sources."prisma-json-schema-0.1.1"
-      (sources."prisma-yml-1.0.93" // {
+      sources."prisma-json-schema-0.1.3"
+      (sources."prisma-yml-1.20.0-beta.18" // {
         dependencies = [
           sources."debug-3.2.6"
           sources."dotenv-4.0.0"
+          sources."fs-extra-7.0.0"
           sources."ms-2.1.1"
         ];
       })
@@ -41564,6 +41813,7 @@ in
       sources."require-from-string-2.0.2"
       sources."require-main-filename-1.0.1"
       sources."resolve-dir-1.0.1"
+      sources."resolve-from-4.0.0"
       sources."restore-cursor-2.0.0"
       sources."rimraf-2.6.2"
       sources."run-async-2.3.0"
@@ -41593,9 +41843,9 @@ in
       sources."spdx-correct-3.0.2"
       sources."spdx-exceptions-2.2.0"
       sources."spdx-expression-parse-3.0.0"
-      sources."spdx-license-ids-3.0.1"
+      sources."spdx-license-ids-3.0.2"
       sources."sprintf-js-1.0.3"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."statuses-1.4.0"
       sources."stealthy-require-1.1.1"
       (sources."string-width-2.1.1" // {
@@ -41618,6 +41868,7 @@ in
       sources."timed-out-4.0.1"
       sources."title-case-2.1.1"
       sources."tmp-0.0.33"
+      sources."tmp-graphql-config-extension-openapi-1.0.7"
       sources."to-fast-properties-2.0.0"
       sources."tough-cookie-2.4.3"
       sources."traverse-chain-0.1.0"
@@ -41646,7 +41897,7 @@ in
       sources."whatwg-fetch-2.0.4"
       sources."which-1.3.1"
       sources."which-module-2.0.0"
-      sources."widest-line-2.0.0"
+      sources."widest-line-2.0.1"
       (sources."wrap-ansi-2.1.0" // {
         dependencies = [
           sources."ansi-regex-2.1.1"
@@ -41681,10 +41932,10 @@ in
   grunt-cli = nodeEnv.buildNodePackage {
     name = "grunt-cli";
     packageName = "grunt-cli";
-    version = "1.3.1";
+    version = "1.3.2";
     src = fetchurl {
-      url = "https://registry.npmjs.org/grunt-cli/-/grunt-cli-1.3.1.tgz";
-      sha512 = "UwBRu/QpAjDc53DRLEkyilFdL0zenpxu+fddTIlsF/KJqdNcHaQmvyu1W3cDesZ9rqqZdKK5A8+QDIyLUEWoZQ==";
+      url = "https://registry.npmjs.org/grunt-cli/-/grunt-cli-1.3.2.tgz";
+      sha512 = "8OHDiZZkcptxVXtMfDxJvmN7MVJNE8L/yIcPb4HB7TlyFD1kDvjHrb62uhySsU14wJx9ORMnTuhRMQ40lH/orQ==";
     };
     dependencies = [
       sources."abbrev-1.1.1"
@@ -41936,7 +42187,7 @@ in
       })
       sources."urix-0.1.0"
       sources."use-3.1.1"
-      sources."v8flags-3.0.2"
+      sources."v8flags-3.1.1"
       sources."which-1.3.1"
     ];
     buildInputs = globalBuildInputs;
@@ -42536,7 +42787,7 @@ in
       sources."global-modules-1.0.0"
       sources."global-prefix-1.0.2"
       sources."glogg-1.0.1"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."gulplog-1.0.0"
       sources."has-value-1.0.0"
       (sources."has-values-1.0.0" // {
@@ -42703,7 +42954,7 @@ in
       sources."spdx-correct-3.0.2"
       sources."spdx-exceptions-2.2.0"
       sources."spdx-expression-parse-3.0.0"
-      sources."spdx-license-ids-3.0.1"
+      sources."spdx-license-ids-3.0.2"
       sources."split-string-3.1.0"
       sources."stack-trace-0.0.10"
       (sources."static-extend-0.1.2" // {
@@ -42868,7 +43119,7 @@ in
       (sources."dom-serializer-0.1.0" // {
         dependencies = [
           sources."domelementtype-1.1.3"
-          sources."entities-1.1.1"
+          sources."entities-1.1.2"
         ];
       })
       sources."domelementtype-1.3.0"
@@ -42905,11 +43156,7 @@ in
       sources."for-in-1.0.2"
       sources."for-own-1.0.0"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."fs-extra-1.0.0"
       sources."fs.realpath-1.0.0"
       (sources."ftp-0.3.10" // {
@@ -42927,7 +43174,7 @@ in
       sources."glob-7.1.3"
       sources."glob-base-0.3.0"
       sources."glob-parent-2.0.0"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."graphlib-2.1.5"
       sources."har-schema-2.0.0"
       sources."har-validator-5.1.0"
@@ -43020,8 +43267,8 @@ in
       sources."lru-cache-4.1.3"
       sources."macos-release-1.1.0"
       sources."make-dir-1.3.0"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."mimic-fn-1.2.0"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
@@ -43112,10 +43359,10 @@ in
       sources."shelljs-0.3.0"
       sources."signal-exit-3.0.2"
       sources."smart-buffer-1.1.15"
-      sources."snyk-1.103.4"
+      sources."snyk-1.106.1"
       sources."snyk-config-2.2.0"
-      sources."snyk-docker-plugin-1.12.0"
-      sources."snyk-go-plugin-1.5.2"
+      sources."snyk-docker-plugin-1.12.1"
+      sources."snyk-go-plugin-1.6.0"
       sources."snyk-gradle-plugin-2.1.0"
       sources."snyk-module-1.8.2"
       sources."snyk-mvn-plugin-2.0.0"
@@ -43127,7 +43374,7 @@ in
       sources."snyk-nuget-plugin-1.6.5"
       sources."snyk-php-plugin-1.5.1"
       sources."snyk-policy-1.12.0"
-      sources."snyk-python-plugin-1.8.2"
+      sources."snyk-python-plugin-1.9.0"
       sources."snyk-resolve-1.0.1"
       sources."snyk-resolve-deps-4.0.2"
       sources."snyk-sbt-plugin-2.0.0"
@@ -43139,7 +43386,7 @@ in
       sources."source-map-support-0.5.9"
       sources."split-1.0.1"
       sources."sprintf-js-1.0.3"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."stack-trace-0.0.10"
       sources."statuses-1.5.0"
       sources."string-width-2.1.1"
@@ -43223,16 +43470,16 @@ in
   html-minifier = nodeEnv.buildNodePackage {
     name = "html-minifier";
     packageName = "html-minifier";
-    version = "3.5.20";
+    version = "3.5.21";
     src = fetchurl {
-      url = "https://registry.npmjs.org/html-minifier/-/html-minifier-3.5.20.tgz";
-      sha512 = "ZmgNLaTp54+HFKkONyLFEfs5dd/ZOtlquKaTnqIWFmx3Av5zG6ZPcV2d0o9XM2fXOTxxIf6eDcwzFFotke/5zA==";
+      url = "https://registry.npmjs.org/html-minifier/-/html-minifier-3.5.21.tgz";
+      sha512 = "LKUKwuJDhxNa3uf/LPR/KVjm/l3rBqtYeCOAekvG8F1vItxMUpueGd94i/asDDr8/1u7InxzFA5EeGjhhG5mMA==";
     };
     dependencies = [
       sources."camel-case-3.0.0"
       sources."clean-css-4.2.1"
       sources."commander-2.17.1"
-      sources."he-1.1.1"
+      sources."he-1.2.0"
       sources."lower-case-1.1.4"
       sources."no-case-2.3.2"
       sources."param-case-2.1.1"
@@ -43282,7 +43529,7 @@ in
           sources."minimist-0.0.10"
         ];
       })
-      (sources."portfinder-1.0.17" // {
+      (sources."portfinder-1.0.19" // {
         dependencies = [
           sources."debug-2.6.9"
         ];
@@ -43305,22 +43552,23 @@ in
   ionic = nodeEnv.buildNodePackage {
     name = "ionic";
     packageName = "ionic";
-    version = "4.2.1";
+    version = "4.3.1";
     src = fetchurl {
-      url = "https://registry.npmjs.org/ionic/-/ionic-4.2.1.tgz";
-      sha512 = "4QwbtBxHYTaa/wxlYx+iXdSALs8aoEAw8poR24tTUtJRd0aKoAJM4K815DuNKLUFdgn3v0pTixdTTPLH8CADxw==";
+      url = "https://registry.npmjs.org/ionic/-/ionic-4.3.1.tgz";
+      sha512 = "zPMaUqiQTrDtZRjwaes0EUbqge+3CaUZRPPbusp7xCRCaT9H81ybhgVKNDzhWUvtWYPurarm4kIRPptoTv3LFA==";
     };
     dependencies = [
-      sources."@ionic/cli-framework-1.1.1"
-      sources."@ionic/discover-1.0.6"
-      sources."@ionic/utils-fs-0.0.3"
-      sources."@ionic/utils-network-0.0.3"
+      sources."@ionic/cli-framework-1.3.0"
+      sources."@ionic/discover-1.0.7"
+      sources."@ionic/utils-fs-0.0.4"
+      sources."@ionic/utils-network-0.0.4"
       sources."agent-base-4.2.1"
       sources."ansi-align-2.0.0"
       sources."ansi-escapes-3.1.0"
       sources."ansi-regex-3.0.0"
       sources."ansi-styles-3.2.1"
       sources."ast-types-0.11.6"
+      sources."astral-regex-1.0.0"
       sources."async-limiter-1.0.0"
       sources."asynckit-0.4.0"
       sources."balanced-match-1.0.0"
@@ -43339,7 +43587,7 @@ in
       sources."co-4.6.0"
       sources."color-convert-1.9.3"
       sources."color-name-1.1.3"
-      sources."combined-stream-1.0.6"
+      sources."combined-stream-1.0.7"
       sources."component-emitter-1.2.1"
       sources."concat-map-0.0.1"
       sources."configstore-3.1.2"
@@ -43373,7 +43621,7 @@ in
       sources."fast-levenshtein-2.0.6"
       sources."figures-2.0.0"
       sources."file-uri-to-path-1.0.0"
-      sources."form-data-2.3.2"
+      sources."form-data-2.3.3"
       sources."formidable-1.2.1"
       sources."fs-minipass-1.2.5"
       sources."fs.realpath-1.0.0"
@@ -43394,7 +43642,7 @@ in
       sources."glob-7.1.3"
       sources."global-dirs-0.1.1"
       sources."got-6.7.1"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."has-flag-3.0.0"
       sources."http-errors-1.6.3"
       (sources."http-proxy-agent-2.1.0" // {
@@ -43453,18 +43701,24 @@ in
       sources."lodash.isarray-3.0.4"
       sources."lodash.keys-3.1.2"
       sources."lodash.restparam-3.6.1"
+      (sources."log-update-2.3.0" // {
+        dependencies = [
+          sources."strip-ansi-4.0.0"
+          sources."wrap-ansi-3.0.1"
+        ];
+      })
       sources."lowercase-keys-1.0.1"
       sources."lru-cache-4.1.3"
       sources."macos-release-1.1.0"
       sources."make-dir-1.3.0"
       sources."methods-1.1.2"
       sources."mime-1.6.0"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."mimic-fn-1.2.0"
       sources."minimatch-3.0.4"
       sources."minimist-1.2.0"
-      (sources."minipass-2.3.4" // {
+      (sources."minipass-2.3.5" // {
         dependencies = [
           sources."yallist-3.0.2"
         ];
@@ -43532,7 +43786,7 @@ in
       sources."shebang-command-1.2.0"
       sources."shebang-regex-1.0.0"
       sources."signal-exit-3.0.2"
-      sources."slice-ansi-1.0.0"
+      sources."slice-ansi-2.0.0"
       sources."smart-buffer-4.0.1"
       sources."socks-2.2.1"
       sources."socks-proxy-agent-4.0.1"
@@ -43588,7 +43842,7 @@ in
       sources."util-deprecate-1.0.2"
       sources."uuid-3.3.2"
       sources."which-1.3.1"
-      sources."widest-line-2.0.0"
+      sources."widest-line-2.0.1"
       sources."win-release-1.1.1"
       sources."wordwrap-1.0.0"
       (sources."wrap-ansi-4.0.0" // {
@@ -43616,10 +43870,10 @@ in
   ios-deploy = nodeEnv.buildNodePackage {
     name = "ios-deploy";
     packageName = "ios-deploy";
-    version = "1.9.3";
+    version = "1.9.4";
     src = fetchurl {
-      url = "https://registry.npmjs.org/ios-deploy/-/ios-deploy-1.9.3.tgz";
-      sha512 = "i/8DxXzcL2feqqL6DjUfjqUHyWVmHYNkzZFTyf6yoC4glrI3jQ+8Hhg63vzw/5OoFXN7OyXqjkshAj9c1EsVSw==";
+      url = "https://registry.npmjs.org/ios-deploy/-/ios-deploy-1.9.4.tgz";
+      sha512 = "pgyc19zgtwGrfx3GL8yV0c0dAPucTpJ0VZkuS3DcqxIZYC48+UW+tBTxI43u1ZDk17mop0ABLs1SkAy5SUQ6pQ==";
     };
     buildInputs = globalBuildInputs;
     meta = {
@@ -43776,10 +44030,10 @@ in
   jake = nodeEnv.buildNodePackage {
     name = "jake";
     packageName = "jake";
-    version = "8.0.18";
+    version = "8.0.19";
     src = fetchurl {
-      url = "https://registry.npmjs.org/jake/-/jake-8.0.18.tgz";
-      sha512 = "KSF3QH/uNR7pKcWgBuS7U1nYoYdcqitLEB86nvIcYztiiDsePkn2/JoSutiKP77O1MTNlbhTiNHorIrlpyy4sA==";
+      url = "https://registry.npmjs.org/jake/-/jake-8.0.19.tgz";
+      sha512 = "iilJduYCUwxRqH3fJ3b4cP5rqeh43pGM8OS62LDwoKCRoeYAj4t/KJAtBJ4jcsVKEOPJ1jNg4o1sKibk3ZnVUw==";
     };
     dependencies = [
       sources."ansi-styles-1.0.0"
@@ -43904,7 +44158,7 @@ in
       })
       sources."glob-7.1.3"
       sources."global-dirs-0.1.1"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."has-flag-3.0.0"
       sources."hosted-git-info-2.7.1"
       sources."indent-string-3.2.0"
@@ -44002,7 +44256,7 @@ in
       sources."spdx-correct-3.0.2"
       sources."spdx-exceptions-2.2.0"
       sources."spdx-expression-parse-3.0.0"
-      sources."spdx-license-ids-3.0.1"
+      sources."spdx-license-ids-3.0.2"
       sources."split2-2.2.0"
       sources."sprintf-js-1.0.3"
       sources."string-similarity-1.2.2"
@@ -44081,7 +44335,7 @@ in
       sources."bluebird-3.5.2"
       sources."catharsis-0.8.9"
       sources."escape-string-regexp-1.0.5"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."js2xmlparser-3.0.0"
       sources."klaw-2.0.0"
       sources."marked-0.3.19"
@@ -44154,7 +44408,7 @@ in
       (sources."dom-serializer-0.1.0" // {
         dependencies = [
           sources."domelementtype-1.1.3"
-          sources."entities-1.1.1"
+          sources."entities-1.1.2"
         ];
       })
       sources."domelementtype-1.3.0"
@@ -44172,16 +44426,12 @@ in
       sources."fast-json-stable-stringify-2.0.0"
       sources."fd-slicer-1.0.1"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."fs-extra-1.0.0"
       sources."fs.realpath-1.0.0"
       sources."getpass-0.1.7"
       sources."glob-7.1.3"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-schema-2.0.0"
       sources."har-validator-5.1.0"
       sources."hasha-2.2.0"
@@ -44203,8 +44453,8 @@ in
       sources."kew-0.7.0"
       sources."klaw-1.3.1"
       sources."lodash-4.17.11"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
       sources."mkdirp-0.5.1"
@@ -44230,7 +44480,7 @@ in
       sources."safer-buffer-2.1.2"
       sources."shelljs-0.3.0"
       sources."split-1.0.1"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."stack-trace-0.0.10"
       sources."string_decoder-0.10.31"
       sources."strip-json-comments-1.0.4"
@@ -44277,13 +44527,13 @@ in
   js-beautify = nodeEnv.buildNodePackage {
     name = "js-beautify";
     packageName = "js-beautify";
-    version = "1.8.7";
+    version = "1.8.8";
     src = fetchurl {
-      url = "https://registry.npmjs.org/js-beautify/-/js-beautify-1.8.7.tgz";
-      sha512 = "yhAMCTv0L9GNg6Gql7i+g4C1z9rQhfHXy4J0TGYFoBzzHR4reWYS573gkRrPuE58dYOH451LmBeAb8L1pLEfdA==";
+      url = "https://registry.npmjs.org/js-beautify/-/js-beautify-1.8.8.tgz";
+      sha512 = "qVNq7ZZ7ZbLdzorvSlRDadS0Rh5oyItaE95v6I4wbbuSiijxn7SnnsV6dvKlcXuO2jX7lK8tn9fBulx34K/Ejg==";
     };
     dependencies = [
-      sources."@types/node-10.11.7"
+      sources."@types/node-10.12.2"
       sources."@types/semver-5.5.0"
       sources."abbrev-1.1.1"
       sources."commander-2.19.0"
@@ -44388,7 +44638,7 @@ in
     dependencies = [
       sources."argparse-1.0.10"
       sources."asynckit-0.4.0"
-      sources."combined-stream-1.0.6"
+      sources."combined-stream-1.0.7"
       sources."commander-2.11.0"
       sources."component-emitter-1.2.1"
       sources."cookiejar-2.1.2"
@@ -44397,7 +44647,7 @@ in
       sources."delayed-stream-1.0.0"
       sources."esprima-4.0.1"
       sources."extend-3.0.2"
-      sources."form-data-2.3.2"
+      sources."form-data-2.3.3"
       sources."formidable-1.2.1"
       sources."graphlib-2.1.5"
       sources."inherits-2.0.3"
@@ -44406,8 +44656,8 @@ in
       sources."lodash-4.17.11"
       sources."methods-1.1.2"
       sources."mime-1.6.0"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."ms-2.1.1"
       sources."native-promise-only-0.8.1"
       sources."path-loader-1.0.9"
@@ -44478,7 +44728,7 @@ in
       sources."cookie-0.3.1"
       sources."cookie-signature-1.0.6"
       sources."core-util-is-1.0.2"
-      sources."cors-2.8.4"
+      sources."cors-2.8.5"
       sources."create-error-class-3.0.2"
       sources."cross-spawn-5.1.0"
       sources."crypto-random-string-1.0.0"
@@ -44520,11 +44770,7 @@ in
       })
       sources."find-up-2.1.0"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."forwarded-0.1.2"
       sources."fresh-0.5.2"
       sources."get-caller-file-1.0.3"
@@ -44532,7 +44778,7 @@ in
       sources."getpass-0.1.7"
       sources."global-dirs-0.1.1"
       sources."got-6.7.1"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-schema-2.0.0"
       sources."har-validator-5.1.0"
       sources."has-flag-3.0.0"
@@ -44581,13 +44827,13 @@ in
       sources."method-override-2.3.10"
       sources."methods-1.1.2"
       sources."mime-1.4.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."mimic-fn-1.2.0"
       sources."minimist-1.2.0"
       sources."morgan-1.9.1"
       sources."ms-2.0.0"
-      sources."nanoid-1.3.0"
+      sources."nanoid-1.3.4"
       sources."negotiator-0.6.1"
       sources."npm-run-path-2.0.2"
       sources."number-is-nan-1.0.1"
@@ -44641,7 +44887,7 @@ in
       sources."shebang-command-1.2.0"
       sources."shebang-regex-1.0.0"
       sources."signal-exit-3.0.2"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."statuses-1.5.0"
       sources."steno-0.4.4"
       sources."string-width-2.1.1"
@@ -44666,7 +44912,7 @@ in
       sources."verror-1.10.0"
       sources."which-1.3.1"
       sources."which-module-2.0.0"
-      sources."widest-line-2.0.0"
+      sources."widest-line-2.0.1"
       (sources."wrap-ansi-2.1.0" // {
         dependencies = [
           sources."ansi-regex-2.1.1"
@@ -44716,10 +44962,10 @@ in
   karma = nodeEnv.buildNodePackage {
     name = "karma";
     packageName = "karma";
-    version = "3.0.0";
+    version = "3.1.1";
     src = fetchurl {
-      url = "https://registry.npmjs.org/karma/-/karma-3.0.0.tgz";
-      sha512 = "ZTjyuDXVXhXsvJ1E4CnZzbCjSxD6sEdzEsFYogLuZM0yqvg/mgz+O+R1jb0J7uAQeuzdY8kJgx6hSNXLwFuHIQ==";
+      url = "https://registry.npmjs.org/karma/-/karma-3.1.1.tgz";
+      sha512 = "NetT3wPCQMNB36uiL9LLyhrOt8SQwrEKt0xD3+KpTCfm0VxVyUJdPL5oTq2Ic5ouemgL/Iz4wqXEbF3zea9kQQ==";
     };
     dependencies = [
       sources."accepts-1.3.5"
@@ -44746,7 +44992,7 @@ in
       sources."base64id-1.0.0"
       sources."better-assert-1.0.2"
       sources."binary-extensions-1.12.0"
-      sources."blob-0.0.4"
+      sources."blob-0.0.5"
       sources."bluebird-3.5.2"
       sources."body-parser-1.18.3"
       sources."brace-expansion-1.1.11"
@@ -44763,7 +45009,7 @@ in
       sources."cache-base-1.0.1"
       sources."callsite-1.0.0"
       sources."chokidar-2.0.4"
-      sources."circular-json-0.5.7"
+      sources."circular-json-0.5.9"
       (sources."class-utils-0.3.6" // {
         dependencies = [
           sources."define-property-0.2.5"
@@ -44804,7 +45050,7 @@ in
       sources."dom-serialize-2.2.1"
       sources."ee-first-1.1.1"
       sources."encodeurl-1.0.2"
-      (sources."engine.io-3.2.0" // {
+      (sources."engine.io-3.2.1" // {
         dependencies = [
           sources."debug-3.1.0"
         ];
@@ -44814,7 +45060,7 @@ in
           sources."debug-3.1.0"
         ];
       })
-      sources."engine.io-parser-2.1.2"
+      sources."engine.io-parser-2.1.3"
       sources."ent-2.2.0"
       sources."escape-html-1.0.3"
       sources."eventemitter3-3.1.0"
@@ -44885,7 +45131,7 @@ in
           sources."is-glob-3.1.0"
         ];
       })
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       (sources."has-binary2-1.0.3" // {
         dependencies = [
           sources."isarray-2.0.1"
@@ -44937,8 +45183,8 @@ in
       sources."media-typer-0.3.0"
       sources."micromatch-3.1.10"
       sources."mime-2.3.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
       sources."mixin-deep-1.3.1"
@@ -45198,8 +45444,8 @@ in
       })
       sources."methods-1.1.2"
       sources."mime-1.3.4"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimist-0.0.8"
       sources."mkdirp-0.5.1"
       sources."morgan-1.6.1"
@@ -45317,7 +45563,7 @@ in
       sources."glob-7.1.3"
       sources."glob-parent-3.1.0"
       sources."glob-stream-6.1.0"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."has-symbols-1.0.0"
       sources."inflight-1.0.6"
       sources."inherits-2.0.3"
@@ -45383,10 +45629,10 @@ in
   leetcode-cli = nodeEnv.buildNodePackage {
     name = "leetcode-cli";
     packageName = "leetcode-cli";
-    version = "2.5.2";
+    version = "2.5.3";
     src = fetchurl {
-      url = "https://registry.npmjs.org/leetcode-cli/-/leetcode-cli-2.5.2.tgz";
-      sha512 = "KneaqL2/SAfJQpxR1yheLrnB10f8vwJJbVBA4vxtRl6aENbO+JKsJSgE1cZvO/4isD+MPI7C5HPjJbL5+MOmnw==";
+      url = "https://registry.npmjs.org/leetcode-cli/-/leetcode-cli-2.5.3.tgz";
+      sha512 = "FlV2bYtdELx6NPSyd+ZfiQ9LKpjNr/UZ3orAhwx2Llg361QvS03XIxFFAi/RuvMKDi01zvHfRzsONPJt4hRXlQ==";
     };
     dependencies = [
       sources."abab-1.0.4"
@@ -45427,13 +45673,13 @@ in
       sources."concat-map-0.0.1"
       sources."core-util-is-1.0.2"
       sources."cross-spawn-5.1.0"
-      (sources."cryptiles-3.1.2" // {
+      (sources."cryptiles-3.1.3" // {
         dependencies = [
           sources."boom-5.2.0"
         ];
       })
       sources."css-select-1.2.0"
-      sources."css-what-2.1.0"
+      sources."css-what-2.1.2"
       sources."cssom-0.3.4"
       sources."cssstyle-0.2.37"
       sources."cycle-1.0.3"
@@ -45451,7 +45697,7 @@ in
       sources."domhandler-2.3.0"
       sources."domutils-1.5.1"
       sources."ecc-jsbn-0.1.2"
-      sources."entities-1.1.1"
+      sources."entities-1.1.2"
       sources."escape-string-regexp-1.0.5"
       sources."escodegen-1.11.0"
       sources."esprima-3.1.3"
@@ -45466,11 +45712,7 @@ in
       sources."fast-levenshtein-2.0.6"
       sources."find-up-2.1.0"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."fs.realpath-1.0.0"
       sources."get-caller-file-1.0.3"
       sources."get-stream-3.0.0"
@@ -45512,8 +45754,8 @@ in
       sources."log-symbols-2.2.0"
       sources."lru-cache-4.1.3"
       sources."mem-1.1.0"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."mimic-fn-1.2.0"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
@@ -45527,7 +45769,7 @@ in
       })
       sources."ncp-1.0.1"
       sources."npm-run-path-2.0.2"
-      sources."nth-check-1.0.1"
+      sources."nth-check-1.0.2"
       sources."number-is-nan-1.0.1"
       sources."nwmatcher-1.4.4"
       sources."oauth-sign-0.8.2"
@@ -45575,7 +45817,7 @@ in
       sources."sntp-2.1.0"
       sources."source-map-0.6.1"
       sources."sprintf-js-1.1.1"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."stack-trace-0.0.10"
       sources."string-width-1.0.2"
       sources."string_decoder-0.10.31"
@@ -45701,11 +45943,11 @@ in
       sources."@lerna/version-3.4.1"
       sources."@lerna/write-log-file-3.0.0"
       sources."@mrmlnc/readdir-enhanced-2.2.1"
-      sources."@nodelib/fs.stat-1.1.2"
+      sources."@nodelib/fs.stat-1.1.3"
       sources."JSONStream-1.3.5"
       sources."abbrev-1.1.1"
       sources."agent-base-4.2.1"
-      sources."agentkeepalive-3.5.1"
+      sources."agentkeepalive-3.5.2"
       sources."ajv-5.5.2"
       sources."ansi-escapes-3.1.0"
       sources."ansi-regex-2.1.1"
@@ -45751,8 +45993,8 @@ in
       sources."builtin-modules-1.1.1"
       sources."builtins-1.0.3"
       sources."byline-5.0.0"
-      sources."byte-size-4.0.3"
-      sources."cacache-11.2.0"
+      sources."byte-size-4.0.4"
+      sources."cacache-11.3.0"
       sources."cache-base-1.0.1"
       sources."call-me-maybe-1.0.1"
       sources."camelcase-4.1.0"
@@ -45807,22 +46049,13 @@ in
       sources."concat-stream-1.6.2"
       sources."config-chain-1.1.12"
       sources."console-control-strings-1.1.0"
-      sources."conventional-changelog-angular-5.0.1"
-      (sources."conventional-changelog-core-3.1.0" // {
-        dependencies = [
-          sources."load-json-file-1.1.0"
-          sources."parse-json-2.2.0"
-          sources."path-type-1.1.0"
-          sources."pify-2.3.0"
-          sources."read-pkg-1.1.0"
-          sources."strip-bom-2.0.0"
-        ];
-      })
-      sources."conventional-changelog-preset-loader-2.0.1"
-      sources."conventional-changelog-writer-4.0.0"
-      sources."conventional-commits-filter-2.0.0"
-      sources."conventional-commits-parser-3.0.0"
-      sources."conventional-recommended-bump-4.0.1"
+      sources."conventional-changelog-angular-5.0.2"
+      sources."conventional-changelog-core-3.1.5"
+      sources."conventional-changelog-preset-loader-2.0.2"
+      sources."conventional-changelog-writer-4.0.2"
+      sources."conventional-commits-filter-2.0.1"
+      sources."conventional-commits-parser-3.0.1"
+      sources."conventional-recommended-bump-4.0.4"
       sources."copy-concurrently-1.0.5"
       sources."copy-descriptor-0.1.1"
       sources."core-util-is-1.0.2"
@@ -45914,11 +46147,7 @@ in
       sources."flush-write-stream-1.0.3"
       sources."for-in-1.0.2"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."fragment-cache-0.2.1"
       sources."from2-2.3.0"
       sources."fs-extra-7.0.0"
@@ -45932,17 +46161,26 @@ in
           sources."string-width-1.0.2"
         ];
       })
-      sources."genfun-4.0.1"
+      sources."genfun-5.0.0"
       sources."get-caller-file-1.0.3"
       (sources."get-pkg-repo-1.4.0" // {
         dependencies = [
           sources."camelcase-2.1.1"
           sources."camelcase-keys-2.1.0"
           sources."decamelize-1.2.0"
+          sources."find-up-1.1.2"
           sources."indent-string-2.1.0"
+          sources."load-json-file-1.1.0"
           sources."map-obj-1.0.1"
           sources."meow-3.7.0"
+          sources."parse-json-2.2.0"
+          sources."path-exists-2.1.0"
+          sources."path-type-1.1.0"
+          sources."pify-2.3.0"
+          sources."read-pkg-1.1.0"
+          sources."read-pkg-up-1.0.1"
           sources."redent-1.0.0"
+          sources."strip-bom-2.0.0"
           sources."strip-indent-1.0.1"
           sources."trim-newlines-1.0.0"
         ];
@@ -45958,13 +46196,13 @@ in
           sources."pify-2.3.0"
         ];
       })
-      sources."git-semver-tags-2.0.0"
+      sources."git-semver-tags-2.0.2"
       sources."gitconfiglocal-1.0.0"
       sources."glob-7.1.3"
       sources."glob-parent-3.1.0"
       sources."glob-to-regexp-0.3.0"
       sources."globby-8.0.1"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       (sources."handlebars-4.0.12" // {
         dependencies = [
           sources."source-map-0.6.1"
@@ -46078,25 +46316,16 @@ in
       sources."map-obj-2.0.0"
       sources."map-visit-1.0.0"
       sources."mem-4.0.0"
-      (sources."meow-4.0.1" // {
-        dependencies = [
-          sources."find-up-2.1.0"
-          sources."locate-path-2.0.0"
-          sources."p-limit-1.3.0"
-          sources."p-locate-2.0.0"
-          sources."p-try-1.0.0"
-          sources."read-pkg-up-3.0.0"
-        ];
-      })
+      sources."meow-4.0.1"
       sources."merge2-1.2.3"
       sources."micromatch-3.1.10"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."mimic-fn-1.2.0"
       sources."minimatch-3.0.4"
       sources."minimist-1.2.0"
       sources."minimist-options-3.0.2"
-      (sources."minipass-2.3.4" // {
+      (sources."minipass-2.3.5" // {
         dependencies = [
           sources."yallist-3.0.2"
         ];
@@ -46133,7 +46362,7 @@ in
       sources."npm-lifecycle-2.1.0"
       sources."npm-package-arg-6.1.0"
       sources."npm-packlist-1.1.12"
-      sources."npm-pick-manifest-2.1.0"
+      sources."npm-pick-manifest-2.2.3"
       sources."npm-registry-fetch-3.8.0"
       sources."npm-run-path-2.0.2"
       sources."npmlog-4.1.2"
@@ -46182,11 +46411,7 @@ in
       sources."p-reduce-1.0.0"
       sources."p-try-2.0.0"
       sources."p-waterfall-1.0.0"
-      (sources."pacote-9.1.0" // {
-        dependencies = [
-          sources."get-stream-3.0.0"
-        ];
-      })
+      sources."pacote-9.2.3"
       sources."parallel-transform-1.1.0"
       sources."parse-github-repo-url-1.4.1"
       sources."parse-json-4.0.0"
@@ -46215,7 +46440,7 @@ in
       sources."promise-retry-1.1.1"
       sources."promzard-0.3.0"
       sources."proto-list-1.2.4"
-      sources."protoduck-5.0.0"
+      sources."protoduck-5.0.1"
       sources."pseudomap-1.0.2"
       sources."psl-1.1.29"
       sources."pump-3.0.0"
@@ -46233,16 +46458,13 @@ in
       sources."read-package-json-2.0.13"
       sources."read-package-tree-5.2.1"
       sources."read-pkg-3.0.0"
-      (sources."read-pkg-up-1.0.1" // {
+      (sources."read-pkg-up-3.0.0" // {
         dependencies = [
-          sources."find-up-1.1.2"
-          sources."load-json-file-1.1.0"
-          sources."parse-json-2.2.0"
-          sources."path-exists-2.1.0"
-          sources."path-type-1.1.0"
-          sources."pify-2.3.0"
-          sources."read-pkg-1.1.0"
-          sources."strip-bom-2.0.0"
+          sources."find-up-2.1.0"
+          sources."locate-path-2.0.0"
+          sources."p-limit-1.3.0"
+          sources."p-locate-2.0.0"
+          sources."p-try-1.0.0"
         ];
       })
       sources."readable-stream-2.3.6"
@@ -46322,12 +46544,12 @@ in
       sources."spdx-correct-3.0.2"
       sources."spdx-exceptions-2.2.0"
       sources."spdx-expression-parse-3.0.0"
-      sources."spdx-license-ids-3.0.1"
+      sources."spdx-license-ids-3.0.2"
       sources."split-1.0.1"
       sources."split-string-3.1.0"
       sources."split2-2.2.0"
       sources."sprintf-js-1.0.3"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."ssri-6.0.1"
       (sources."static-extend-0.1.2" // {
         dependencies = [
@@ -46488,13 +46710,9 @@ in
       sources."fast-deep-equal-1.1.0"
       sources."fast-json-stable-stringify-2.0.0"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."getpass-0.1.7"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-schema-2.0.0"
       sources."har-validator-5.1.0"
       sources."http-signature-1.2.0"
@@ -46507,8 +46725,8 @@ in
       sources."json-stringify-safe-5.0.1"
       sources."jsprim-1.4.1"
       sources."mime-1.6.0"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimist-0.0.8"
       sources."mkdirp-0.5.1"
       sources."oauth-sign-0.9.0"
@@ -46522,7 +46740,7 @@ in
       sources."safe-buffer-5.1.2"
       sources."safer-buffer-2.1.2"
       sources."source-map-0.6.1"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."tough-cookie-2.4.3"
       sources."tunnel-agent-0.6.0"
       sources."tweetnacl-0.14.5"
@@ -46627,7 +46845,7 @@ in
       })
       sources."copy-descriptor-0.1.1"
       sources."core-util-is-1.0.2"
-      sources."cors-2.8.4"
+      sources."cors-2.8.5"
       sources."debug-2.6.9"
       sources."decode-uri-component-0.2.0"
       (sources."define-property-2.0.2" // {
@@ -46669,7 +46887,7 @@ in
       sources."get-value-2.0.6"
       sources."glob-base-0.3.0"
       sources."glob-parent-2.0.0"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       (sources."has-value-1.0.0" // {
         dependencies = [
           sources."isobject-3.0.1"
@@ -46691,7 +46909,7 @@ in
           sources."statuses-1.5.0"
         ];
       })
-      sources."http-parser-js-0.4.13"
+      sources."http-parser-js-0.5.0"
       sources."inherits-2.0.3"
       (sources."is-accessor-descriptor-1.0.0" // {
         dependencies = [
@@ -46734,8 +46952,8 @@ in
       sources."math-random-1.0.1"
       sources."micromatch-2.3.11"
       sources."mime-1.4.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       (sources."mixin-deep-1.3.1" // {
         dependencies = [
           sources."is-extendable-1.0.1"
@@ -46789,7 +47007,7 @@ in
       sources."preserve-0.2.0"
       sources."process-nextick-args-2.0.0"
       sources."proxy-middleware-0.15.0"
-      (sources."randomatic-3.1.0" // {
+      (sources."randomatic-3.1.1" // {
         dependencies = [
           sources."is-number-4.0.0"
           sources."kind-of-6.0.2"
@@ -47005,7 +47223,7 @@ in
       sources."bcrypt-pbkdf-1.0.2"
       sources."better-assert-1.0.2"
       sources."binary-extensions-1.12.0"
-      sources."blob-0.0.4"
+      sources."blob-0.0.5"
       sources."body-parser-1.18.3"
       sources."braces-1.8.5"
       sources."bytes-3.0.0"
@@ -47062,7 +47280,7 @@ in
       sources."ee-first-1.1.1"
       sources."emoji-regex-6.1.1"
       sources."encodeurl-1.0.2"
-      (sources."engine.io-3.2.0" // {
+      (sources."engine.io-3.2.1" // {
         dependencies = [
           sources."debug-3.1.0"
         ];
@@ -47072,8 +47290,8 @@ in
           sources."debug-3.1.0"
         ];
       })
-      sources."engine.io-parser-2.1.2"
-      sources."entities-1.1.1"
+      sources."engine.io-parser-2.1.3"
+      sources."entities-1.1.2"
       sources."escape-html-1.0.3"
       sources."etag-1.8.1"
       sources."expand-brackets-0.1.5"
@@ -47103,11 +47321,7 @@ in
       sources."for-in-1.0.2"
       sources."for-own-0.1.5"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."forwarded-0.1.2"
       sources."fragment-cache-0.2.1"
       sources."fresh-0.5.2"
@@ -47117,7 +47331,7 @@ in
       sources."github-slugger-1.2.0"
       sources."glob-base-0.3.0"
       sources."glob-parent-2.0.0"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-schema-2.0.0"
       sources."har-validator-5.1.0"
       (sources."has-binary2-1.0.3" // {
@@ -47205,8 +47419,8 @@ in
       sources."methods-1.1.2"
       sources."micromatch-2.3.11"
       sources."mime-1.4.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimist-1.2.0"
       (sources."mixin-deep-1.3.1" // {
         dependencies = [
@@ -47266,7 +47480,7 @@ in
       sources."psl-1.1.29"
       sources."punycode-1.4.1"
       sources."qs-6.5.2"
-      (sources."randomatic-3.1.0" // {
+      (sources."randomatic-3.1.1" // {
         dependencies = [
           sources."is-number-4.0.0"
           sources."kind-of-6.0.2"
@@ -47396,7 +47610,7 @@ in
       sources."source-map-url-0.4.0"
       sources."split-string-3.1.0"
       sources."sprintf-js-1.0.3"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       (sources."static-extend-0.1.2" // {
         dependencies = [
           sources."define-property-0.2.5"
@@ -47773,15 +47987,11 @@ in
       sources."for-in-1.0.2"
       sources."for-own-1.0.0"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."fragment-cache-0.2.1"
       (sources."fs-mkdirp-stream-1.0.0" // {
         dependencies = [
-          sources."graceful-fs-4.1.11"
+          sources."graceful-fs-4.1.15"
           sources."readable-stream-2.3.6"
           sources."string_decoder-1.1.1"
           sources."through2-2.0.3"
@@ -47832,7 +48042,7 @@ in
       })
       (sources."gulp-sourcemaps-2.6.4" // {
         dependencies = [
-          sources."graceful-fs-4.1.11"
+          sources."graceful-fs-4.1.15"
           sources."readable-stream-2.3.6"
           sources."source-map-0.6.1"
           sources."string_decoder-1.1.1"
@@ -47846,7 +48056,7 @@ in
           sources."clone-stats-1.0.0"
           sources."glob-7.1.3"
           sources."glob-stream-6.1.0"
-          sources."graceful-fs-4.1.11"
+          sources."graceful-fs-4.1.15"
           sources."minimatch-3.0.4"
           sources."ordered-read-streams-1.0.1"
           sources."readable-stream-2.3.6"
@@ -47941,7 +48151,7 @@ in
       (sources."less-3.8.1" // {
         dependencies = [
           sources."clone-2.1.2"
-          sources."graceful-fs-4.1.11"
+          sources."graceful-fs-4.1.15"
           sources."source-map-0.6.1"
         ];
       })
@@ -47981,8 +48191,8 @@ in
       sources."memoizee-0.4.14"
       sources."micromatch-3.1.10"
       sources."mime-1.6.0"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimatch-2.0.10"
       sources."minimist-1.2.0"
       (sources."mixin-deep-1.3.1" // {
@@ -48125,7 +48335,7 @@ in
       sources."source-map-url-0.4.0"
       sources."sparkles-1.0.1"
       sources."split-string-3.1.0"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       (sources."static-extend-0.1.2" // {
         dependencies = [
           sources."define-property-0.2.5"
@@ -48179,7 +48389,7 @@ in
       sources."tough-cookie-2.4.3"
       sources."tunnel-agent-0.6.0"
       sources."tweetnacl-0.14.5"
-      sources."typescript-3.1.3"
+      sources."typescript-3.1.6"
       (sources."uglify-js-3.4.9" // {
         dependencies = [
           sources."source-map-0.6.1"
@@ -48222,7 +48432,7 @@ in
         dependencies = [
           sources."clone-2.1.2"
           sources."clone-stats-1.0.0"
-          sources."graceful-fs-4.1.11"
+          sources."graceful-fs-4.1.15"
           sources."vinyl-2.2.0"
         ];
       })
@@ -48297,7 +48507,7 @@ in
     dependencies = [
       sources."argparse-1.0.10"
       sources."asynckit-0.4.0"
-      sources."combined-stream-1.0.6"
+      sources."combined-stream-1.0.7"
       sources."commander-2.19.0"
       sources."component-emitter-1.2.1"
       sources."cookiejar-2.1.2"
@@ -48306,7 +48516,7 @@ in
       sources."delayed-stream-1.0.0"
       sources."esprima-4.0.1"
       sources."extend-3.0.2"
-      sources."form-data-2.3.2"
+      sources."form-data-2.3.3"
       sources."formidable-1.2.1"
       sources."graphlib-2.1.5"
       sources."inherits-2.0.3"
@@ -48316,8 +48526,8 @@ in
       sources."lodash-4.17.11"
       sources."methods-1.1.2"
       sources."mime-1.6.0"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."ms-2.1.1"
       sources."native-promise-only-0.8.1"
       sources."path-loader-1.0.9"
@@ -48405,11 +48615,7 @@ in
       sources."findit-2.0.0"
       sources."foreachasync-3.0.0"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       (sources."fs-extra-0.6.4" // {
         dependencies = [
           sources."mkdirp-0.3.5"
@@ -48422,7 +48628,7 @@ in
       })
       sources."gauge-2.7.4"
       sources."getpass-0.1.7"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-schema-2.0.0"
       sources."har-validator-5.1.0"
       sources."has-unicode-2.0.1"
@@ -48441,10 +48647,10 @@ in
       sources."json-stringify-safe-5.0.1"
       sources."jsonfile-1.0.1"
       sources."jsprim-1.4.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimist-0.0.8"
-      sources."minipass-2.3.4"
+      sources."minipass-2.3.5"
       sources."minizlib-1.1.1"
       sources."mkdirp-0.5.1"
       sources."ncp-0.4.2"
@@ -48488,8 +48694,8 @@ in
       sources."spdx-correct-3.0.2"
       sources."spdx-exceptions-2.2.0"
       sources."spdx-expression-parse-3.0.0"
-      sources."spdx-license-ids-3.0.1"
-      sources."sshpk-1.15.1"
+      sources."spdx-license-ids-3.0.2"
+      sources."sshpk-1.15.2"
       sources."ssri-5.3.0"
       sources."string-width-1.0.2"
       sources."string_decoder-1.1.1"
@@ -48559,17 +48765,13 @@ in
       sources."fast-deep-equal-1.1.0"
       sources."fast-json-stable-stringify-2.0.0"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."fs.realpath-1.0.0"
       sources."fstream-1.0.11"
       sources."gauge-2.7.4"
       sources."getpass-0.1.7"
       sources."glob-7.1.3"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-schema-2.0.0"
       sources."har-validator-5.1.0"
       sources."has-unicode-2.0.1"
@@ -48586,8 +48788,8 @@ in
       sources."json-schema-traverse-0.3.1"
       sources."json-stringify-safe-5.0.1"
       sources."jsprim-1.4.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
       sources."mkdirp-0.5.1"
@@ -48614,7 +48816,7 @@ in
       sources."semver-5.3.0"
       sources."set-blocking-2.0.0"
       sources."signal-exit-3.0.2"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."string-width-1.0.2"
       sources."string_decoder-1.1.1"
       sources."strip-ansi-3.0.1"
@@ -48748,7 +48950,7 @@ in
         ];
       })
       sources."glob-5.0.15"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-schema-1.0.5"
       sources."har-validator-4.2.1"
       sources."has-unicode-2.0.1"
@@ -48794,8 +48996,8 @@ in
       sources."merge-descriptors-1.0.1"
       sources."methods-1.1.2"
       sources."mime-1.4.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimatch-3.0.4"
       sources."minimist-1.2.0"
       (sources."mkdirp-0.5.1" // {
@@ -48873,8 +49075,8 @@ in
       sources."spdx-correct-3.0.2"
       sources."spdx-exceptions-2.2.0"
       sources."spdx-expression-parse-3.0.0"
-      sources."spdx-license-ids-3.0.1"
-      (sources."sshpk-1.15.1" // {
+      sources."spdx-license-ids-3.0.2"
+      (sources."sshpk-1.15.2" // {
         dependencies = [
           sources."assert-plus-1.0.0"
         ];
@@ -48986,7 +49188,7 @@ in
       sources."isarray-1.0.0"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
-      sources."minipass-2.3.4"
+      sources."minipass-2.3.5"
       sources."minizlib-1.1.1"
       sources."mkdirp-0.5.1"
       sources."ms-2.0.0"
@@ -49038,10 +49240,10 @@ in
   nodemon = nodeEnv.buildNodePackage {
     name = "nodemon";
     packageName = "nodemon";
-    version = "1.18.4";
+    version = "1.18.5";
     src = fetchurl {
-      url = "https://registry.npmjs.org/nodemon/-/nodemon-1.18.4.tgz";
-      sha512 = "hyK6vl65IPnky/ee+D3IWvVGgJa/m3No2/Xc/3wanS6Ce1MWjCzH6NnhPJ/vZM+6JFym16jtHx51lmCMB9HDtg==";
+      url = "https://registry.npmjs.org/nodemon/-/nodemon-1.18.5.tgz";
+      sha512 = "8806dC8dfBlbxQmqNOSEeay/qlbddKvFzxIGNxnPtxUlTtH77xsrC66RnA3M47HCSgMgE5bj+U586o50RowXBg==";
     };
     dependencies = [
       sources."abbrev-1.1.1"
@@ -49168,7 +49370,7 @@ in
       })
       sources."global-dirs-0.1.1"
       sources."got-6.7.1"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."has-flag-3.0.0"
       sources."has-value-1.0.0"
       (sources."has-values-1.0.0" // {
@@ -49382,7 +49584,7 @@ in
       sources."use-3.1.1"
       sources."util-deprecate-1.0.2"
       sources."which-1.3.1"
-      sources."widest-line-2.0.0"
+      sources."widest-line-2.0.1"
       sources."write-file-atomic-2.3.0"
       sources."xdg-basedir-3.0.0"
       sources."yallist-2.1.2"
@@ -49399,18 +49601,18 @@ in
   node-red = nodeEnv.buildNodePackage {
     name = "node-red";
     packageName = "node-red";
-    version = "0.19.4";
+    version = "0.19.5";
     src = fetchurl {
-      url = "https://registry.npmjs.org/node-red/-/node-red-0.19.4.tgz";
-      sha512 = "BcFaU1bCAl0fsu6t3sSPXXPuvUiIKcHj3jrpV3zvVols+dp0zgM9xPX9N8D7978h402H8h2A+0DDQA1vENQIEA==";
+      url = "https://registry.npmjs.org/node-red/-/node-red-0.19.5.tgz";
+      sha512 = "Bwt5RYc77MqQjw9tSGFQHgfn6/3PTy0f9v4I4Nw4waJutGdxuAhdQJuPy6ouJpFt6CRI1ChmfJvC2ZBUMnaUCQ==";
     };
     dependencies = [
       sources."abbrev-1.1.1"
       sources."accepts-1.3.5"
       sources."addressparser-0.3.2"
       sources."agent-base-4.2.1"
-      sources."ajv-6.5.3"
-      sources."append-field-0.1.0"
+      sources."ajv-6.5.4"
+      sources."append-field-1.0.0"
       sources."argparse-1.0.10"
       sources."array-flatten-1.1.1"
       sources."array-indexofobject-0.0.1"
@@ -49422,11 +49624,15 @@ in
       sources."aws-sign2-0.7.0"
       sources."aws4-1.8.0"
       sources."balanced-match-1.0.0"
-      sources."basic-auth-2.0.0"
+      sources."basic-auth-2.0.1"
       sources."bcrypt-2.0.1"
       sources."bcrypt-pbkdf-1.0.2"
       sources."bcryptjs-2.4.3"
-      sources."bl-1.2.2"
+      (sources."bl-1.2.2" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
+        ];
+      })
       sources."body-parser-1.18.3"
       sources."boolbase-1.0.0"
       sources."brace-expansion-1.1.11"
@@ -49444,7 +49650,11 @@ in
         ];
       })
       sources."bytes-3.0.0"
-      sources."callback-stream-1.1.0"
+      (sources."callback-stream-1.1.0" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
+        ];
+      })
       sources."caseless-0.12.0"
       sources."cheerio-0.22.0"
       sources."clone-2.1.2"
@@ -49453,7 +49663,11 @@ in
       sources."commander-2.17.1"
       sources."commist-1.0.0"
       sources."concat-map-0.0.1"
-      sources."concat-stream-1.6.2"
+      (sources."concat-stream-1.6.2" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
+        ];
+      })
       sources."content-disposition-0.5.2"
       sources."content-type-1.0.4"
       sources."cookie-0.3.1"
@@ -49462,9 +49676,9 @@ in
       sources."core-util-is-1.0.2"
       sources."cors-2.8.4"
       sources."crc-3.4.4"
-      sources."cron-1.4.1"
+      sources."cron-1.5.0"
       sources."css-select-1.2.0"
-      sources."css-what-2.1.0"
+      sources."css-what-2.1.2"
       sources."d-1.0.0"
       sources."dashdash-1.14.1"
       sources."debug-2.6.9"
@@ -49487,13 +49701,17 @@ in
       sources."domelementtype-1.3.0"
       sources."domhandler-2.4.2"
       sources."domutils-1.5.1"
-      sources."duplexify-3.6.1"
+      (sources."duplexify-3.6.1" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
+        ];
+      })
       sources."ecc-jsbn-0.1.2"
       sources."ee-first-1.1.1"
       sources."encodeurl-1.0.2"
       sources."encoding-0.1.12"
       sources."end-of-stream-1.4.1"
-      sources."entities-1.1.1"
+      sources."entities-1.1.2"
       sources."es5-ext-0.10.46"
       sources."es6-iterator-2.0.3"
       sources."es6-map-0.1.5"
@@ -49506,18 +49724,8 @@ in
       sources."esprima-4.0.1"
       sources."etag-1.8.1"
       sources."event-emitter-0.3.5"
-      (sources."express-4.16.3" // {
+      (sources."express-4.16.4" // {
         dependencies = [
-          sources."body-parser-1.18.2"
-          (sources."http-errors-1.6.2" // {
-            dependencies = [
-              sources."depd-1.1.1"
-              sources."setprototypeof-1.0.3"
-            ];
-          })
-          sources."iconv-lite-0.4.19"
-          sources."qs-6.5.1"
-          sources."raw-body-2.3.2"
           sources."statuses-1.4.0"
         ];
       })
@@ -49529,6 +49737,7 @@ in
       (sources."feedparser-2.2.9" // {
         dependencies = [
           sources."addressparser-1.0.1"
+          sources."readable-stream-2.3.6"
         ];
       })
       (sources."finalhandler-1.1.1" // {
@@ -49537,11 +49746,7 @@ in
         ];
       })
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."forwarded-0.1.2"
       sources."fresh-0.5.2"
       sources."fs-extra-5.0.0"
@@ -49550,8 +49755,12 @@ in
       sources."getpass-0.1.7"
       sources."glob-7.1.3"
       sources."glob-parent-3.1.0"
-      sources."glob-stream-6.1.0"
-      sources."graceful-fs-4.1.11"
+      (sources."glob-stream-6.1.0" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
+        ];
+      })
+      sources."graceful-fs-4.1.15"
       sources."har-schema-2.0.0"
       (sources."har-validator-5.1.0" // {
         dependencies = [
@@ -49562,7 +49771,7 @@ in
       })
       sources."hash-sum-1.0.2"
       sources."help-me-1.1.0"
-      sources."htmlparser2-3.9.2"
+      sources."htmlparser2-3.10.0"
       sources."http-errors-1.6.3"
       sources."http-signature-1.2.0"
       (sources."https-proxy-agent-2.2.1" // {
@@ -49636,8 +49845,8 @@ in
       sources."merge-descriptors-1.0.1"
       sources."methods-1.1.2"
       sources."mime-1.4.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       (sources."mimelib-0.3.1" // {
         dependencies = [
           sources."addressparser-1.0.1"
@@ -49651,16 +49860,16 @@ in
         ];
       })
       sources."moment-2.22.2"
-      sources."moment-timezone-0.5.21"
-      sources."mqtt-2.18.8"
+      sources."moment-timezone-0.5.23"
+      (sources."mqtt-2.18.8" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
+        ];
+      })
       sources."mqtt-packet-5.6.0"
       sources."mri-1.1.1"
       sources."ms-2.0.0"
-      (sources."multer-1.3.1" // {
-        dependencies = [
-          sources."object-assign-3.0.0"
-        ];
-      })
+      sources."multer-1.4.1"
       sources."mustache-2.3.2"
       sources."nan-2.10.0"
       sources."needle-0.11.0"
@@ -49668,8 +49877,8 @@ in
       sources."next-tick-1.0.0"
       sources."node-red-node-email-0.1.29"
       sources."node-red-node-feedparser-0.1.14"
-      sources."node-red-node-rbe-0.2.3"
-      sources."node-red-node-twitter-1.1.3"
+      sources."node-red-node-rbe-0.2.4"
+      sources."node-red-node-twitter-1.1.4"
       sources."nodemailer-1.11.0"
       sources."nodemailer-direct-transport-1.1.0"
       (sources."nodemailer-smtp-transport-1.1.0" // {
@@ -49679,7 +49888,7 @@ in
       })
       sources."nodemailer-wellknown-0.1.10"
       sources."nopt-4.0.1"
-      sources."nth-check-1.0.1"
+      sources."nth-check-1.0.2"
       sources."oauth-0.9.15"
       sources."oauth-sign-0.9.0"
       sources."oauth2orize-1.11.0"
@@ -49693,7 +49902,11 @@ in
         ];
       })
       sources."options-0.0.6"
-      sources."ordered-read-streams-1.0.1"
+      (sources."ordered-read-streams-1.0.1" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
+        ];
+      })
       sources."os-homedir-1.0.2"
       sources."os-tmpdir-1.0.2"
       sources."osenv-0.1.5"
@@ -49723,19 +49936,15 @@ in
       sources."random-bytes-1.0.0"
       sources."range-parser-1.2.0"
       sources."raw-body-2.3.3"
-      sources."readable-stream-2.3.6"
+      sources."readable-stream-3.0.6"
       sources."reinterval-1.1.0"
       sources."remove-trailing-separator-1.1.0"
-      (sources."request-2.88.0" // {
-        dependencies = [
-          sources."safe-buffer-5.1.2"
-        ];
-      })
+      sources."request-2.88.0"
       sources."retry-0.6.1"
-      sources."safe-buffer-5.1.1"
+      sources."safe-buffer-5.1.2"
       sources."safer-buffer-2.1.2"
       sources."sax-1.2.4"
-      sources."semver-5.5.1"
+      sources."semver-5.6.0"
       (sources."send-0.16.2" // {
         dependencies = [
           sources."statuses-1.4.0"
@@ -49748,12 +49957,16 @@ in
       sources."source-map-0.6.1"
       sources."split2-2.2.0"
       sources."sprintf-js-1.0.3"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."statuses-1.5.0"
       sources."stream-shift-1.0.0"
       sources."streamsearch-0.1.2"
       sources."string_decoder-1.1.1"
-      sources."through2-2.0.3"
+      (sources."through2-2.0.3" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
+        ];
+      })
       sources."through2-filter-2.0.0"
       sources."to-absolute-glob-2.0.2"
       (sources."tough-cookie-2.4.3" // {
@@ -49788,6 +50001,7 @@ in
       sources."verror-1.10.0"
       (sources."websocket-stream-5.1.2" // {
         dependencies = [
+          sources."readable-stream-2.3.6"
           sources."ws-3.3.3"
         ];
       })
@@ -49906,7 +50120,7 @@ in
       sources."qs-0.5.1"
       sources."rai-0.1.12"
       sources."range-parser-0.0.4"
-      (sources."raw-socket-1.6.3" // {
+      (sources."raw-socket-1.6.4" // {
         dependencies = [
           sources."nan-2.10.0"
         ];
@@ -50010,11 +50224,7 @@ in
       sources."findit-1.2.0"
       sources."foreachasync-3.0.0"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       (sources."fs-extra-0.6.4" // {
         dependencies = [
           sources."rimraf-2.2.8"
@@ -50049,8 +50259,8 @@ in
       sources."json-stringify-safe-5.0.1"
       sources."jsonfile-1.0.1"
       sources."jsprim-1.4.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
       sources."mkdirp-0.3.5"
@@ -50092,7 +50302,7 @@ in
       sources."set-blocking-2.0.0"
       sources."signal-exit-3.0.2"
       sources."slide-1.1.6"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."string-width-1.0.2"
       sources."string_decoder-1.1.1"
       sources."strip-ansi-3.0.1"
@@ -50176,7 +50386,7 @@ in
       sources."get-stream-3.0.0"
       sources."global-dirs-0.1.1"
       sources."got-6.7.1"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."has-ansi-2.0.0"
       sources."has-flag-3.0.0"
       sources."import-lazy-2.1.0"
@@ -50264,7 +50474,7 @@ in
       })
       sources."url-parse-lax-1.0.0"
       sources."which-1.3.1"
-      sources."widest-line-2.0.0"
+      sources."widest-line-2.0.1"
       sources."write-file-atomic-2.3.0"
       sources."xdg-basedir-3.0.0"
       sources."yallist-2.1.2"
@@ -50318,7 +50528,7 @@ in
       sources."find-up-2.1.0"
       sources."get-caller-file-1.0.3"
       sources."get-stream-3.0.0"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."has-flag-3.0.0"
       sources."hoek-4.2.1"
       sources."hosted-git-info-2.7.1"
@@ -50383,7 +50593,7 @@ in
       sources."spdx-correct-3.0.2"
       sources."spdx-exceptions-2.2.0"
       sources."spdx-expression-parse-3.0.0"
-      sources."spdx-license-ids-3.0.1"
+      sources."spdx-license-ids-3.0.2"
       sources."string-width-1.0.2"
       sources."strip-ansi-3.0.1"
       sources."strip-bom-3.0.0"
@@ -50537,7 +50747,7 @@ in
       sources."ecc-jsbn-0.1.2"
       sources."ee-first-1.1.1"
       sources."encodeurl-1.0.2"
-      sources."entities-1.1.1"
+      sources."entities-1.1.2"
       sources."error-ex-1.3.2"
       sources."escape-html-1.0.3"
       sources."esprima-4.0.1"
@@ -50560,11 +50770,7 @@ in
       })
       sources."find-up-1.1.2"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."forwarded-0.1.2"
       sources."fresh-0.5.2"
       sources."function-bind-1.1.1"
@@ -50573,7 +50779,7 @@ in
       sources."get-caller-file-1.0.3"
       sources."getpass-0.1.7"
       sources."glob-6.0.4"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       (sources."handlebars-4.0.12" // {
         dependencies = [
           sources."async-2.6.1"
@@ -50592,7 +50798,7 @@ in
       sources."inherits-2.0.3"
       sources."invert-kv-1.0.0"
       sources."ipaddr.js-1.8.0"
-      sources."is-arguments-1.0.2"
+      sources."is-arguments-1.0.3"
       sources."is-arrayish-0.2.1"
       sources."is-builtin-module-1.0.0"
       sources."is-fullwidth-code-point-1.0.0"
@@ -50641,12 +50847,12 @@ in
       sources."lodash.clone-4.3.2"
       sources."media-typer-0.3.0"
       sources."mediawiki-title-0.6.5"
-      sources."merge-1.2.0"
+      sources."merge-1.2.1"
       sources."merge-descriptors-1.0.1"
       sources."methods-1.1.2"
       sources."mime-1.4.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.10"
       (sources."mkdirp-0.5.1" // {
@@ -50728,9 +50934,9 @@ in
       sources."spdx-correct-3.0.2"
       sources."spdx-exceptions-2.2.0"
       sources."spdx-expression-parse-3.0.0"
-      sources."spdx-license-ids-3.0.1"
+      sources."spdx-license-ids-3.0.2"
       sources."sprintf-js-1.0.3"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."statuses-1.5.0"
       sources."streamsearch-0.1.2"
       sources."string-width-1.0.2"
@@ -50861,7 +51067,7 @@ in
       sources."get-browser-rtc-1.0.2"
       sources."get-stdin-4.0.1"
       sources."glob-7.1.3"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."has-ansi-2.0.0"
       sources."has-flag-3.0.0"
       sources."hat-0.0.3"
@@ -51010,7 +51216,7 @@ in
       sources."spdx-correct-3.0.2"
       sources."spdx-exceptions-2.2.0"
       sources."spdx-expression-parse-3.0.0"
-      sources."spdx-license-ids-3.0.1"
+      sources."spdx-license-ids-3.0.2"
       sources."speedometer-0.1.4"
       sources."stream-buffers-2.2.0"
       sources."string-width-1.0.2"
@@ -51024,7 +51230,7 @@ in
       sources."symbol-observable-1.0.1"
       sources."thirty-two-1.0.2"
       sources."through-2.3.8"
-      sources."thunky-1.0.2"
+      sources."thunky-1.0.3"
       sources."tmp-0.0.33"
       sources."torrent-discovery-5.4.0"
       sources."torrent-piece-1.1.2"
@@ -51240,7 +51446,7 @@ in
       sources."fs.realpath-1.0.0"
       sources."get-browser-rtc-1.0.2"
       sources."glob-7.1.3"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       (sources."has-binary-0.1.7" // {
         dependencies = [
           sources."isarray-0.0.1"
@@ -51297,8 +51503,8 @@ in
       })
       sources."methods-1.1.2"
       sources."mime-1.3.4"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."mimic-response-1.0.1"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
@@ -51454,7 +51660,7 @@ in
       sources."string_decoder-1.1.1"
       sources."tar-stream-1.6.2"
       sources."thirty-two-0.0.2"
-      sources."thunky-1.0.2"
+      sources."thunky-1.0.3"
       sources."to-array-0.1.4"
       sources."to-buffer-1.1.1"
       sources."toidentifier-1.0.0"
@@ -51502,7 +51708,7 @@ in
     packageName = "phantomjs";
     version = "2.1.7";
     src = fetchurl {
-      url = "https://registry.npmjs.org/phantomjs/-/phantomjs-2.1.7.tgz";
+      url = "http://registry.npmjs.org/phantomjs/-/phantomjs-2.1.7.tgz";
       sha1 = "c6910f67935c37285b6114329fc2f27d5f3e3134";
     };
     dependencies = [
@@ -51550,7 +51756,7 @@ in
         ];
       })
       sources."glob-7.1.3"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-validator-2.0.6"
       sources."has-ansi-2.0.0"
       sources."hasha-2.2.0"
@@ -51580,8 +51786,8 @@ in
       sources."kew-0.7.0"
       sources."klaw-1.3.1"
       sources."lodash-4.17.11"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
       sources."mkdirp-0.5.0"
@@ -51601,7 +51807,7 @@ in
       sources."rimraf-2.6.2"
       sources."safer-buffer-2.1.2"
       sources."sntp-1.0.9"
-      (sources."sshpk-1.15.1" // {
+      (sources."sshpk-1.15.2" // {
         dependencies = [
           sources."assert-plus-1.0.0"
         ];
@@ -51638,10 +51844,10 @@ in
   pnpm = nodeEnv.buildNodePackage {
     name = "pnpm";
     packageName = "pnpm";
-    version = "2.16.3";
+    version = "2.17.7";
     src = fetchurl {
-      url = "https://registry.npmjs.org/pnpm/-/pnpm-2.16.3.tgz";
-      sha512 = "W63qZOC9YGr+33JYvZjvhzvYL4YKT2gAywDJQrHvKTL6vmnnSh+GdM3ZdGIIZ6A57YB3NgvQaq/BJ2uYjwn3ZQ==";
+      url = "https://registry.npmjs.org/pnpm/-/pnpm-2.17.7.tgz";
+      sha512 = "FwZFpKSL4BNu1IGIScveHqZALpm6jSF7QR90CZXW4RfKaLpNYcIkkFC9iPBT4AdpPSv1UR/gYUWyQdTZBx2a5g==";
     };
     buildInputs = globalBuildInputs;
     meta = {
@@ -51679,8 +51885,9 @@ in
     };
     dependencies = [
       sources."JSONStream-1.3.5"
-      sources."acorn-6.0.2"
-      sources."acorn-node-1.6.0"
+      sources."acorn-6.0.3"
+      sources."acorn-dynamic-import-4.0.0"
+      sources."acorn-node-1.6.2"
       sources."acorn-walk-6.1.0"
       sources."anymatch-2.0.0"
       sources."arr-diff-4.0.0"
@@ -51852,7 +52059,7 @@ in
           sources."is-glob-3.1.0"
         ];
       })
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."has-1.0.3"
       sources."has-value-1.0.0"
       (sources."has-values-1.0.0" // {
@@ -52252,7 +52459,7 @@ in
         ];
       })
       sources."github-from-package-0.0.0"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-schema-1.0.5"
       sources."har-validator-4.2.1"
       sources."has-1.0.3"
@@ -52304,8 +52511,8 @@ in
       sources."merge-descriptors-1.0.1"
       sources."methods-1.1.2"
       sources."mime-1.4.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimist-0.0.8"
       sources."mkdirp-0.5.1"
       sources."morgan-1.9.1"
@@ -52313,8 +52520,8 @@ in
       sources."nan-2.5.1"
       sources."negotiator-0.6.1"
       sources."net-browserify-alt-1.1.0"
-      sources."node-abi-2.4.5"
-      sources."node.extend-2.0.0"
+      sources."node-abi-2.5.0"
+      sources."node.extend-2.0.1"
       sources."noop-logger-0.1.1"
       sources."npmlog-4.1.2"
       sources."number-is-nan-1.0.1"
@@ -52393,7 +52600,7 @@ in
       sources."simple-get-1.4.3"
       sources."sntp-1.0.9"
       sources."source-map-0.5.7"
-      (sources."sshpk-1.15.1" // {
+      (sources."sshpk-1.15.2" // {
         dependencies = [
           sources."assert-plus-1.0.0"
         ];
@@ -52473,7 +52680,7 @@ in
       sources."esprima-3.1.3"
       sources."esprima-fb-13001.1001.0-dev-harmony-fb"
       sources."glob-5.0.15"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."iconv-lite-0.4.24"
       sources."inflight-1.0.6"
       sources."inherits-2.0.3"
@@ -52629,11 +52836,7 @@ in
       sources."fast-deep-equal-1.1.0"
       sources."fast-json-stable-stringify-2.0.0"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."formidable-1.0.11"
       sources."fresh-0.2.0"
       sources."getpass-0.1.7"
@@ -52653,8 +52856,8 @@ in
       sources."keypress-0.1.0"
       sources."methods-0.1.0"
       sources."mime-1.2.11"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."mkdirp-0.3.5"
       sources."ms-2.1.1"
       sources."multiparty-2.2.0"
@@ -52683,7 +52886,7 @@ in
       sources."safer-buffer-2.1.2"
       sources."sax-1.2.4"
       sources."send-0.1.4"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."stream-counter-0.2.0"
       sources."string-1.6.1"
       sources."string_decoder-0.10.31"
@@ -52706,10 +52909,10 @@ in
   scuttlebot = nodeEnv.buildNodePackage {
     name = "scuttlebot";
     packageName = "scuttlebot";
-    version = "13.0.0";
+    version = "13.0.3";
     src = fetchurl {
-      url = "https://registry.npmjs.org/scuttlebot/-/scuttlebot-13.0.0.tgz";
-      sha512 = "niRO3ySzMcXXIrx88zBMdLZ53zvC3DALiFZL42hELL0nE3ohGlhSYQNYefgPB1KiVyMomuNvlhusw9yQsYs/dQ==";
+      url = "https://registry.npmjs.org/scuttlebot/-/scuttlebot-13.0.3.tgz";
+      sha512 = "/Axzh0wWOSb8n9i/7t+HaN+71rj+Q7oCnObpph7WAoroHKb2GtgZALLW2ioJ10PXbRrEPHFTkHhmvBKUKRYu4w==";
     };
     dependencies = [
       sources."abstract-leveldown-4.0.3"
@@ -52737,7 +52940,7 @@ in
       sources."async-single-1.0.5"
       sources."async-write-2.1.0"
       sources."atob-2.1.2"
-      sources."atomic-file-0.0.1"
+      sources."atomic-file-1.1.5"
       sources."attach-ware-1.1.1"
       sources."bail-1.0.3"
       sources."balanced-match-1.0.0"
@@ -52803,6 +53006,7 @@ in
       sources."code-point-at-1.1.0"
       sources."collapse-white-space-1.0.4"
       sources."collection-visit-1.0.0"
+      sources."colors-0.5.1"
       sources."commander-2.19.0"
       sources."compare-at-paths-1.0.0"
       sources."component-emitter-1.2.1"
@@ -52825,7 +53029,7 @@ in
       sources."continuable-series-1.2.0"
       sources."copy-descriptor-0.1.1"
       sources."core-util-is-1.0.2"
-      sources."cross-spawn-5.1.0"
+      sources."cross-spawn-6.0.5"
       sources."debug-2.6.9"
       sources."decode-uri-component-0.2.0"
       sources."decompress-response-3.3.0"
@@ -52842,18 +53046,15 @@ in
       sources."delegates-1.0.0"
       sources."detab-1.0.2"
       sources."detect-libc-1.0.3"
+      sources."discontinuous-range-1.0.0"
       sources."dynamic-dijkstra-1.0.0"
       sources."ed2curve-0.1.4"
       sources."elegant-spinner-1.0.1"
       sources."emoji-named-characters-1.0.2"
       sources."emoji-server-1.0.0"
-      (sources."encoding-down-4.0.1" // {
-        dependencies = [
-          sources."level-codec-8.0.0"
-        ];
-      })
+      sources."encoding-down-4.0.1"
       sources."end-of-stream-1.4.1"
-      sources."epidemic-broadcast-trees-6.3.4"
+      sources."epidemic-broadcast-trees-6.3.5"
       sources."errno-0.1.7"
       sources."es-abstract-1.12.0"
       sources."es-to-primitive-1.2.0"
@@ -52874,32 +53075,35 @@ in
       sources."fast-future-1.0.2"
       sources."filename-regex-2.0.1"
       sources."fill-range-2.2.4"
-      sources."flumecodec-0.0.1"
-      sources."flumedb-0.5.1"
+      (sources."flumecodec-0.0.0" // {
+        dependencies = [
+          sources."level-codec-6.2.0"
+        ];
+      })
+      (sources."flumedb-1.0.1" // {
+        dependencies = [
+          sources."pull-cont-0.0.0"
+        ];
+      })
       (sources."flumelog-offset-3.3.2" // {
         dependencies = [
           sources."looper-4.0.0"
         ];
       })
-      (sources."flumeview-hashtable-1.0.4" // {
-        dependencies = [
-          sources."atomic-file-1.1.5"
-        ];
-      })
+      sources."flumeview-hashtable-1.0.4"
       (sources."flumeview-level-3.0.6" // {
         dependencies = [
+          sources."level-3.0.2"
           sources."obv-0.0.0"
         ];
       })
       (sources."flumeview-query-6.3.0" // {
         dependencies = [
-          sources."map-filter-reduce-3.2.1"
+          sources."map-filter-reduce-3.2.2"
         ];
       })
       (sources."flumeview-reduce-1.3.14" // {
         dependencies = [
-          sources."atomic-file-1.1.5"
-          sources."flumecodec-0.0.0"
           sources."obv-0.0.0"
         ];
       })
@@ -52918,8 +53122,7 @@ in
       sources."glob-base-0.3.0"
       sources."glob-parent-2.0.0"
       sources."globby-4.1.0"
-      sources."graceful-fs-4.1.11"
-      sources."graphreduce-3.0.4"
+      sources."graceful-fs-4.1.15"
       sources."has-1.0.3"
       sources."has-ansi-2.0.0"
       sources."has-network-0.0.1"
@@ -52949,7 +53152,7 @@ in
       sources."inherits-2.0.3"
       sources."ini-1.3.5"
       sources."int53-0.2.4"
-      sources."ip-0.3.3"
+      sources."ip-1.1.5"
       sources."irregular-plurals-1.4.0"
       (sources."is-accessor-descriptor-1.0.0" // {
         dependencies = [
@@ -52961,6 +53164,7 @@ in
       sources."is-binary-path-1.0.1"
       sources."is-buffer-1.1.6"
       sources."is-callable-1.1.4"
+      sources."is-canonical-base64-1.1.1"
       (sources."is-data-descriptor-1.0.0" // {
         dependencies = [
           sources."kind-of-6.0.2"
@@ -52974,7 +53178,7 @@ in
         ];
       })
       sources."is-dotfile-1.0.3"
-      sources."is-electron-2.1.0"
+      sources."is-electron-2.2.0"
       sources."is-equal-shallow-0.1.3"
       sources."is-extendable-0.1.1"
       sources."is-extglob-1.0.0"
@@ -52998,13 +53202,22 @@ in
       sources."isobject-2.1.0"
       sources."json-buffer-2.0.11"
       sources."kind-of-3.2.2"
-      (sources."layered-graph-1.1.1" // {
+      sources."layered-graph-1.1.1"
+      (sources."level-4.0.0" // {
         dependencies = [
-          sources."pull-cont-0.1.1"
+          sources."abstract-leveldown-5.0.0"
+          sources."deferred-leveldown-4.0.2"
+          sources."encoding-down-5.0.4"
+          sources."level-codec-9.0.0"
+          sources."level-errors-2.0.0"
+          sources."level-iterator-stream-3.0.1"
+          sources."level-packager-3.1.0"
+          sources."leveldown-4.0.1"
+          sources."levelup-3.1.1"
+          sources."nan-2.10.0"
         ];
       })
-      sources."level-3.0.2"
-      sources."level-codec-6.2.0"
+      sources."level-codec-8.0.0"
       sources."level-errors-1.1.2"
       sources."level-iterator-stream-2.0.3"
       sources."level-packager-2.1.1"
@@ -53045,7 +53258,6 @@ in
       sources."longest-streak-1.0.0"
       sources."looper-3.0.0"
       sources."lossy-store-1.2.3"
-      sources."lru-cache-4.1.3"
       sources."ltgt-2.2.1"
       sources."map-cache-0.2.2"
       sources."map-filter-reduce-2.2.1"
@@ -53069,6 +53281,7 @@ in
         ];
       })
       sources."monotonic-timestamp-0.0.9"
+      sources."moo-0.4.3"
       sources."ms-2.0.0"
       (sources."multiblob-1.13.1" // {
         dependencies = [
@@ -53078,7 +53291,8 @@ in
       })
       sources."multiblob-http-0.4.2"
       sources."multicb-1.2.2"
-      sources."multiserver-1.13.5"
+      sources."multiserver-1.13.7"
+      sources."multiserver-address-1.0.1"
       sources."muxrpc-6.4.1"
       (sources."muxrpc-validation-2.0.1" // {
         dependencies = [
@@ -53104,13 +53318,12 @@ in
         ];
       })
       sources."ncp-2.0.0"
-      sources."node-abi-2.4.5"
+      sources."nearley-2.15.1"
+      sources."nice-try-1.0.5"
+      sources."node-abi-2.5.0"
       sources."node-gyp-build-3.5.0"
-      (sources."non-private-ip-1.4.4" // {
-        dependencies = [
-          sources."ip-1.1.5"
-        ];
-      })
+      sources."nomnom-1.6.2"
+      sources."non-private-ip-1.4.4"
       sources."noop-logger-0.1.1"
       sources."normalize-path-2.1.1"
       sources."normalize-uri-1.1.1"
@@ -53150,7 +53363,7 @@ in
       sources."on-wakeup-1.0.1"
       sources."once-1.4.0"
       sources."onetime-1.1.0"
-      sources."opencollective-postinstall-2.0.0"
+      sources."opencollective-postinstall-2.0.1"
       sources."options-0.0.6"
       sources."os-homedir-1.0.2"
       sources."os-tmpdir-1.0.2"
@@ -53161,6 +53374,7 @@ in
       sources."parse-glob-3.0.4"
       sources."pascalcase-0.1.1"
       sources."path-is-absolute-1.0.1"
+      sources."path-key-2.0.1"
       sources."path-parse-1.0.6"
       sources."pify-2.3.0"
       sources."pinkie-2.0.4"
@@ -53172,11 +53386,10 @@ in
       sources."private-box-0.3.0"
       sources."process-nextick-args-2.0.0"
       sources."prr-1.0.1"
-      sources."pseudomap-1.0.2"
-      sources."pull-abortable-4.1.1"
+      sources."pull-abortable-4.0.0"
       sources."pull-box-stream-1.0.13"
       sources."pull-cat-1.1.11"
-      sources."pull-cont-0.0.0"
+      sources."pull-cont-0.1.1"
       sources."pull-core-1.1.0"
       (sources."pull-cursor-3.0.0" // {
         dependencies = [
@@ -53199,11 +53412,7 @@ in
       })
       sources."pull-handshake-1.1.4"
       sources."pull-hash-1.0.0"
-      (sources."pull-inactivity-2.1.2" // {
-        dependencies = [
-          sources."pull-abortable-4.0.0"
-        ];
-      })
+      sources."pull-inactivity-2.1.3"
       sources."pull-level-2.0.4"
       sources."pull-live-1.0.1"
       (sources."pull-looper-1.0.0" // {
@@ -53225,10 +53434,9 @@ in
       sources."pull-rate-1.0.2"
       sources."pull-reader-1.3.1"
       sources."pull-sink-through-0.0.0"
-      sources."pull-sort-1.0.1"
+      sources."pull-sort-1.0.2"
       sources."pull-stream-3.6.9"
-      sources."pull-stream-to-stream-1.3.4"
-      sources."pull-stringify-1.2.2"
+      sources."pull-stringify-2.0.0"
       sources."pull-through-1.0.18"
       sources."pull-traverse-1.0.3"
       sources."pull-utf8-decoder-1.0.2"
@@ -53247,7 +53455,9 @@ in
       sources."pump-2.0.1"
       sources."push-stream-10.0.4"
       sources."push-stream-to-pull-stream-1.0.3"
-      (sources."randomatic-3.1.0" // {
+      sources."railroad-diagrams-1.0.0"
+      sources."randexp-0.4.6"
+      (sources."randomatic-3.1.1" // {
         dependencies = [
           sources."is-number-4.0.0"
           sources."kind-of-6.0.2"
@@ -53327,16 +53537,8 @@ in
       sources."safe-buffer-5.1.2"
       sources."safe-regex-1.1.0"
       sources."secret-handshake-1.1.14"
-      (sources."secret-stack-4.2.4" // {
-        dependencies = [
-          sources."ip-1.1.5"
-        ];
-      })
-      (sources."secure-scuttlebutt-18.5.0" // {
-        dependencies = [
-          sources."deep-equal-0.2.2"
-        ];
-      })
+      sources."secret-stack-4.2.4"
+      sources."secure-scuttlebutt-18.6.0"
       sources."semver-5.6.0"
       sources."separator-escape-0.0.0"
       sources."set-blocking-2.0.0"
@@ -53378,11 +53580,7 @@ in
         ];
       })
       sources."snapdragon-util-3.0.1"
-      (sources."socks-2.2.1" // {
-        dependencies = [
-          sources."ip-1.1.5"
-        ];
-      })
+      sources."socks-2.2.1"
       sources."sodium-browserify-1.2.4"
       (sources."sodium-browserify-tweetnacl-0.2.3" // {
         dependencies = [
@@ -53396,31 +53594,23 @@ in
       sources."source-map-url-0.4.0"
       sources."split-buffer-1.0.0"
       sources."split-string-3.1.0"
-      sources."ssb-blobs-1.1.5"
+      sources."ssb-blobs-1.1.6"
       sources."ssb-client-4.6.0"
-      sources."ssb-config-2.3.5"
-      sources."ssb-ebt-5.2.3"
-      (sources."ssb-friends-3.1.3" // {
-        dependencies = [
-          sources."pull-cont-0.1.1"
-        ];
-      })
+      sources."ssb-config-2.3.7"
+      sources."ssb-ebt-5.2.7"
+      sources."ssb-friends-3.1.6"
       sources."ssb-keys-7.1.3"
       sources."ssb-links-3.0.3"
       sources."ssb-msgs-5.2.0"
       (sources."ssb-query-2.3.0" // {
         dependencies = [
           sources."flumeview-query-7.1.0"
-          sources."map-filter-reduce-3.2.1"
+          sources."map-filter-reduce-3.2.2"
         ];
       })
-      (sources."ssb-ref-2.12.0" // {
-        dependencies = [
-          sources."ip-1.1.5"
-        ];
-      })
-      sources."ssb-validate-3.0.11"
-      sources."ssb-ws-3.0.0"
+      sources."ssb-ref-2.13.6"
+      sources."ssb-validate-4.0.0"
+      sources."ssb-ws-3.0.2"
       sources."stack-0.1.0"
       (sources."static-extend-0.1.2" // {
         dependencies = [
@@ -53482,6 +53672,7 @@ in
       sources."typewiselite-1.0.0"
       sources."uint48be-1.0.2"
       sources."ultron-1.0.2"
+      sources."underscore-1.4.4"
       sources."unherit-1.1.1"
       sources."unified-2.1.4"
       (sources."union-value-1.0.0" // {
@@ -53523,7 +53714,6 @@ in
       sources."wrappy-1.0.2"
       sources."ws-1.1.5"
       sources."xtend-4.0.1"
-      sources."yallist-2.1.2"
       sources."zerr-1.0.4"
     ];
     buildInputs = globalBuildInputs;
@@ -53633,7 +53823,7 @@ in
       sources."update-check-1.5.2"
       sources."uri-js-4.2.2"
       sources."which-1.3.1"
-      sources."widest-line-2.0.0"
+      sources."widest-line-2.0.1"
       sources."yallist-2.1.2"
     ];
     buildInputs = globalBuildInputs;
@@ -53717,7 +53907,7 @@ in
         ];
       })
       sources."engine.io-parser-1.0.6"
-      sources."entities-1.1.1"
+      sources."entities-1.1.2"
       sources."escape-html-1.0.3"
       sources."etag-1.8.1"
       sources."event-stream-3.3.6"
@@ -53729,11 +53919,7 @@ in
       sources."finalhandler-1.1.1"
       sources."flatmap-stream-0.1.1"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."forwarded-0.1.2"
       sources."fresh-0.5.2"
       sources."from-0.1.7"
@@ -53772,8 +53958,8 @@ in
       sources."merge-descriptors-1.0.1"
       sources."methods-1.1.2"
       sources."mime-1.4.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimist-0.0.8"
       sources."mkdirp-0.5.1"
       sources."moment-2.7.0"
@@ -53835,7 +54021,7 @@ in
         ];
       })
       sources."split-1.0.1"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."statuses-1.4.0"
       sources."stream-combiner-0.2.2"
       sources."string_decoder-0.10.31"
@@ -53896,12 +54082,10 @@ in
       (sources."body-parser-1.18.3" // {
         dependencies = [
           sources."bytes-3.0.0"
+          sources."debug-2.6.9"
           sources."http-errors-1.6.3"
           sources."iconv-lite-0.4.23"
-          sources."qs-6.5.2"
           sources."raw-body-2.3.3"
-          sources."setprototypeof-1.1.0"
-          sources."statuses-1.5.0"
         ];
       })
       sources."brace-expansion-1.1.11"
@@ -53918,6 +54102,7 @@ in
       (sources."compression-1.7.3" // {
         dependencies = [
           sources."bytes-3.0.0"
+          sources."debug-2.6.9"
         ];
       })
       sources."concat-map-0.0.1"
@@ -53925,11 +54110,11 @@ in
       sources."content-type-1.0.4"
       sources."cookie-0.3.1"
       sources."cookie-signature-1.0.6"
-      sources."cookies-0.7.2"
+      sources."cookies-0.7.3"
       sources."core-util-is-1.0.2"
       sources."crypt3-0.2.0"
       sources."dashdash-1.14.1"
-      sources."debug-2.6.9"
+      sources."debug-3.1.0"
       sources."delayed-stream-1.0.0"
       sources."depd-1.1.2"
       sources."destroy-1.0.4"
@@ -53945,25 +54130,25 @@ in
       sources."ecc-jsbn-0.1.2"
       sources."ee-first-1.1.1"
       sources."encodeurl-1.0.2"
-      sources."entities-1.1.1"
+      sources."entities-1.1.2"
       sources."es6-shim-0.21.1"
       sources."escape-html-1.0.3"
       sources."escape-string-regexp-1.0.5"
       sources."esprima-4.0.1"
       sources."etag-1.8.1"
-      sources."express-5.0.0-alpha.6"
+      sources."express-5.0.0-alpha.7"
       sources."express-json5-0.1.0"
       sources."extend-3.0.2"
       sources."extsprintf-1.3.0"
       sources."fast-deep-equal-1.1.0"
       sources."fast-json-stable-stringify-2.0.0"
-      sources."finalhandler-1.0.6"
-      sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
+      (sources."finalhandler-1.1.1" // {
         dependencies = [
-          sources."combined-stream-1.0.6"
+          sources."debug-2.6.9"
         ];
       })
+      sources."forever-agent-0.6.1"
+      sources."form-data-2.3.3"
       sources."forwarded-0.1.2"
       sources."fresh-0.5.2"
       sources."fs-ext-0.6.0"
@@ -53978,14 +54163,13 @@ in
       sources."har-validator-5.1.0"
       sources."has-flag-3.0.0"
       sources."highlight.js-8.9.1"
-      (sources."htmlparser2-3.9.2" // {
+      (sources."htmlparser2-3.10.0" // {
         dependencies = [
-          sources."readable-stream-2.3.6"
+          sources."readable-stream-3.0.6"
         ];
       })
       (sources."http-errors-1.7.1" // {
         dependencies = [
-          sources."setprototypeof-1.1.0"
           sources."statuses-1.5.0"
         ];
       })
@@ -53993,9 +54177,9 @@ in
       sources."iconv-lite-0.4.8"
       sources."inflight-1.0.6"
       sources."inherits-2.0.3"
-      sources."ipaddr.js-1.4.0"
+      sources."ipaddr.js-1.8.0"
       sources."is-typedarray-1.0.0"
-      sources."isarray-1.0.0"
+      sources."isarray-0.0.1"
       sources."isstream-0.1.2"
       sources."jju-1.4.0"
       sources."js-yaml-3.12.0"
@@ -54019,9 +54203,9 @@ in
       sources."media-typer-0.3.0"
       sources."merge-descriptors-1.0.1"
       sources."methods-1.1.2"
-      sources."mime-1.3.4"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-1.4.1"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimatch-1.0.0"
       sources."minimist-0.0.8"
       sources."mkdirp-0.5.1"
@@ -54046,56 +54230,41 @@ in
           sources."source-map-0.6.1"
         ];
       })
-      sources."process-nextick-args-2.0.0"
-      sources."proxy-addr-1.1.5"
+      sources."proxy-addr-2.0.4"
       sources."psl-1.1.29"
       sources."punycode-1.4.1"
-      sources."qs-6.5.0"
+      sources."qs-6.5.2"
       sources."range-parser-1.2.0"
       sources."raw-body-1.3.4"
       (sources."readable-stream-1.1.14" // {
         dependencies = [
-          sources."isarray-0.0.1"
           sources."string_decoder-0.10.31"
         ];
       })
       sources."render-readme-1.3.1"
-      (sources."request-2.88.0" // {
-        dependencies = [
-          sources."qs-6.5.2"
-        ];
-      })
+      sources."request-2.88.0"
       sources."rimraf-2.4.5"
-      (sources."router-1.3.3" // {
-        dependencies = [
-          sources."setprototypeof-1.1.0"
-          sources."utils-merge-1.0.1"
-        ];
-      })
+      sources."router-2.0.0-alpha.1"
       sources."safe-buffer-5.1.2"
       sources."safe-json-stringify-1.2.0"
       sources."safer-buffer-2.1.2"
       sources."sanitize-html-1.19.1"
       sources."semver-4.3.6"
-      (sources."send-0.15.6" // {
+      (sources."send-0.16.2" // {
         dependencies = [
-          (sources."http-errors-1.6.3" // {
-            dependencies = [
-              sources."statuses-1.5.0"
-            ];
-          })
-          sources."setprototypeof-1.1.0"
+          sources."debug-2.6.9"
+          sources."http-errors-1.6.3"
         ];
       })
-      sources."serve-static-1.12.6"
-      sources."setprototypeof-1.0.3"
+      sources."serve-static-1.13.2"
+      sources."setprototypeof-1.1.0"
       sources."sigmund-1.0.1"
       sources."sinopia-htpasswd-0.4.5"
       sources."source-map-0.1.43"
       sources."sprintf-js-1.0.3"
       sources."srcset-1.0.0"
-      sources."sshpk-1.15.1"
-      sources."statuses-1.3.1"
+      sources."sshpk-1.15.2"
+      sources."statuses-1.4.0"
       sources."string_decoder-1.1.1"
       sources."supports-color-5.5.0"
       sources."through-2.3.8"
@@ -54112,7 +54281,7 @@ in
       })
       sources."unpipe-1.0.0"
       sources."util-deprecate-1.0.2"
-      sources."utils-merge-1.0.0"
+      sources."utils-merge-1.0.1"
       sources."uuid-3.3.2"
       sources."vary-1.1.2"
       sources."verror-1.10.0"
@@ -54223,7 +54392,7 @@ in
       sources."for-in-1.0.2"
       sources."fragment-cache-0.2.1"
       sources."get-value-2.0.6"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."graceful-readlink-1.0.1"
       sources."has-value-1.0.0"
       (sources."has-values-1.0.0" // {
@@ -54521,10 +54690,10 @@ in
   snyk = nodeEnv.buildNodePackage {
     name = "snyk";
     packageName = "snyk";
-    version = "1.103.4";
+    version = "1.106.1";
     src = fetchurl {
-      url = "https://registry.npmjs.org/snyk/-/snyk-1.103.4.tgz";
-      sha512 = "ynLlsLDjAkzymd0qi1il6f34S4oNTfIgvFCFvkYxvqfBkedfOoDQT4TLU8gi+55MGM6iornf2iefC2FW92BwnQ==";
+      url = "https://registry.npmjs.org/snyk/-/snyk-1.106.1.tgz";
+      sha512 = "WMHCAoRfXsHRXdMxImvabsZ35ycRYvvIeJyftfKUpP1y4Dq0nu2Evn4SL1z8ZX0q2TpCiQmU7PE4+WhoZr3KnQ==";
     };
     dependencies = [
       sources."@yarnpkg/lockfile-1.1.0"
@@ -54599,7 +54768,7 @@ in
           sources."ms-2.0.0"
         ];
       })
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."graphlib-2.1.5"
       sources."has-flag-3.0.0"
       sources."hasbin-1.2.3"
@@ -54724,8 +54893,8 @@ in
       sources."signal-exit-3.0.2"
       sources."smart-buffer-1.1.15"
       sources."snyk-config-2.2.0"
-      sources."snyk-docker-plugin-1.12.0"
-      sources."snyk-go-plugin-1.5.2"
+      sources."snyk-docker-plugin-1.12.1"
+      sources."snyk-go-plugin-1.6.0"
       sources."snyk-gradle-plugin-2.1.0"
       sources."snyk-module-1.8.2"
       sources."snyk-mvn-plugin-2.0.0"
@@ -54737,7 +54906,7 @@ in
       sources."snyk-nuget-plugin-1.6.5"
       sources."snyk-php-plugin-1.5.1"
       sources."snyk-policy-1.12.0"
-      sources."snyk-python-plugin-1.8.2"
+      sources."snyk-python-plugin-1.9.0"
       sources."snyk-resolve-1.0.1"
       sources."snyk-resolve-deps-4.0.2"
       sources."snyk-sbt-plugin-2.0.0"
@@ -54826,22 +54995,22 @@ in
       sources."base64-arraybuffer-0.1.5"
       sources."base64id-1.0.0"
       sources."better-assert-1.0.2"
-      sources."blob-0.0.4"
+      sources."blob-0.0.5"
       sources."callsite-1.0.0"
       sources."component-bind-1.0.0"
       sources."component-emitter-1.2.1"
       sources."component-inherit-0.0.3"
       sources."cookie-0.3.1"
       sources."debug-3.1.0"
-      sources."engine.io-3.2.0"
+      sources."engine.io-3.2.1"
       sources."engine.io-client-3.2.1"
-      sources."engine.io-parser-2.1.2"
+      sources."engine.io-parser-2.1.3"
       sources."has-binary2-1.0.3"
       sources."has-cors-1.1.0"
       sources."indexof-0.0.1"
       sources."isarray-2.0.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."ms-2.0.0"
       sources."negotiator-0.6.1"
       sources."object-component-0.0.3"
@@ -55000,11 +55169,11 @@ in
       sources."boolbase-1.0.0"
       sources."coa-2.0.1"
       sources."colors-1.1.2"
-      sources."css-select-2.0.0"
-      sources."css-select-base-adapter-0.1.0"
+      sources."css-select-2.0.2"
+      sources."css-select-base-adapter-0.1.1"
       sources."css-tree-1.0.0-alpha.28"
       sources."css-url-regex-1.1.0"
-      sources."css-what-2.1.0"
+      sources."css-what-2.1.2"
       (sources."csso-3.5.1" // {
         dependencies = [
           sources."css-tree-1.0.0-alpha.29"
@@ -55018,7 +55187,7 @@ in
       })
       sources."domelementtype-1.3.0"
       sources."domutils-1.7.0"
-      sources."entities-1.1.1"
+      sources."entities-1.1.2"
       sources."es-abstract-1.12.0"
       sources."es-to-primitive-1.2.0"
       sources."esprima-4.0.1"
@@ -55033,7 +55202,7 @@ in
       sources."mdn-data-1.1.4"
       sources."minimist-0.0.8"
       sources."mkdirp-0.5.1"
-      sources."nth-check-1.0.1"
+      sources."nth-check-1.0.2"
       sources."object-keys-1.0.12"
       sources."object.getownpropertydescriptors-2.0.3"
       sources."object.values-1.0.4"
@@ -55153,7 +55322,7 @@ in
       sources."collection-visit-1.0.0"
       sources."color-convert-1.9.3"
       sources."color-name-1.1.3"
-      sources."combined-stream-1.0.6"
+      sources."combined-stream-1.0.7"
       sources."commander-2.19.0"
       sources."component-emitter-1.2.1"
       sources."concat-map-0.0.1"
@@ -55239,7 +55408,7 @@ in
       sources."finalhandler-1.1.0"
       sources."flatmap-stream-0.1.1"
       sources."for-in-1.0.2"
-      sources."form-data-2.3.2"
+      sources."form-data-2.3.3"
       sources."formidable-1.2.1"
       sources."fragment-cache-0.2.1"
       sources."fresh-0.5.2"
@@ -55257,7 +55426,7 @@ in
       })
       sources."global-dirs-0.1.1"
       sources."got-6.7.1"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       (sources."graphlib-2.1.5" // {
         dependencies = [
           sources."lodash-4.17.11"
@@ -55386,8 +55555,8 @@ in
       sources."methods-1.1.2"
       sources."micromatch-3.1.10"
       sources."mime-1.4.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
       sources."mixin-deep-1.3.1"
@@ -55410,7 +55579,7 @@ in
       sources."nan-2.11.1"
       sources."nanomatch-1.2.13"
       sources."native-promise-only-0.8.1"
-      (sources."nodemon-1.18.4" // {
+      (sources."nodemon-1.18.5" // {
         dependencies = [
           sources."debug-3.2.6"
           sources."ms-2.1.1"
@@ -55673,7 +55842,7 @@ in
       sources."valid-url-1.0.9"
       sources."validator-10.8.0"
       sources."which-1.3.1"
-      sources."widest-line-2.0.0"
+      sources."widest-line-2.0.1"
       sources."wordwrap-0.0.3"
       sources."wrappy-1.0.2"
       sources."write-file-atomic-2.3.0"
@@ -55709,7 +55878,7 @@ in
       sources."errno-0.1.7"
       sources."fs.realpath-1.0.0"
       sources."glob-7.1.3"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."inflight-1.0.6"
       sources."inherits-2.0.3"
       sources."isarray-1.0.0"
@@ -55740,10 +55909,10 @@ in
   three = nodeEnv.buildNodePackage {
     name = "three";
     packageName = "three";
-    version = "0.97.0";
+    version = "0.98.0";
     src = fetchurl {
-      url = "https://registry.npmjs.org/three/-/three-0.97.0.tgz";
-      sha512 = "ctZF79O1R2aMIDnz9cV5GUIONyFnYvfQKg4+EAwEVaEr1mgy99rglstH6hhRdIThu3SOa4Ns5da/Ee5fTbWc9A==";
+      url = "https://registry.npmjs.org/three/-/three-0.98.0.tgz";
+      sha512 = "fihjYVjCmQbI03zt1+YCl/m+UrZCcDHFNLexgqBOIdPwnO6PYkQaYUsIbqtvNNse+BiMeu+pQWzZn9/NSnIv6A==";
     };
     buildInputs = globalBuildInputs;
     meta = {
@@ -55812,16 +55981,12 @@ in
         ];
       })
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."fs-extra-7.0.0"
       sources."getpass-0.1.7"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-schema-2.0.0"
-      sources."har-validator-5.0.3"
+      sources."har-validator-5.1.0"
       sources."http-signature-1.2.0"
       sources."humanize-0.0.9"
       sources."is-typedarray-1.0.0"
@@ -55835,23 +56000,30 @@ in
       sources."keypress-0.2.1"
       sources."lodash-4.17.11"
       sources."longjohn-0.2.12"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimist-0.0.10"
       sources."moment-2.22.2"
-      (sources."node-appc-0.2.48" // {
+      (sources."node-appc-0.2.49" // {
         dependencies = [
-          sources."fs-extra-6.0.1"
+          sources."request-2.88.0"
         ];
       })
-      sources."oauth-sign-0.8.2"
+      sources."oauth-sign-0.9.0"
       sources."optimist-0.6.1"
       sources."os-tmpdir-1.0.2"
       sources."performance-now-2.1.0"
       sources."pkginfo-0.3.1"
+      sources."psl-1.1.29"
       sources."punycode-1.4.1"
       sources."qs-6.5.2"
-      sources."request-2.87.0"
+      (sources."request-2.87.0" // {
+        dependencies = [
+          sources."har-validator-5.0.3"
+          sources."oauth-sign-0.8.2"
+          sources."tough-cookie-2.3.4"
+        ];
+      })
       sources."rimraf-2.2.8"
       sources."safe-buffer-5.1.2"
       sources."safer-buffer-2.1.2"
@@ -55859,10 +56031,10 @@ in
       sources."source-map-0.6.1"
       sources."source-map-support-0.5.9"
       sources."sprintf-0.1.5"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."stack-trace-0.0.10"
       sources."temp-0.8.3"
-      sources."tough-cookie-2.3.4"
+      sources."tough-cookie-2.4.3"
       sources."tunnel-agent-0.6.0"
       sources."tweetnacl-0.14.5"
       sources."uglify-js-3.4.9"
@@ -56073,10 +56245,10 @@ in
   typescript = nodeEnv.buildNodePackage {
     name = "typescript";
     packageName = "typescript";
-    version = "3.1.3";
+    version = "3.1.6";
     src = fetchurl {
-      url = "https://registry.npmjs.org/typescript/-/typescript-3.1.3.tgz";
-      sha512 = "+81MUSyX+BaSo+u2RbozuQk/UWx6hfG0a5gHu4ANEM4sU96XbuIyAB+rWBW1u70c6a5QuZfuYICn3s2UjuHUpA==";
+      url = "https://registry.npmjs.org/typescript/-/typescript-3.1.6.tgz";
+      sha512 = "tDMYfVtvpb96msS1lDX9MEdHrW4yOuZ4Kdc4Him9oU796XldPYF/t2+uKoX0BBa0hXXwDlqYQbXY5Rzjzc5hBA==";
     };
     buildInputs = globalBuildInputs;
     meta = {
@@ -56128,7 +56300,7 @@ in
       sources."color-convert-1.9.3"
       sources."color-name-1.1.3"
       sources."columnify-1.5.4"
-      sources."combined-stream-1.0.6"
+      sources."combined-stream-1.0.7"
       sources."concat-map-0.0.1"
       sources."concat-stream-1.6.2"
       sources."configstore-3.1.2"
@@ -56149,14 +56321,14 @@ in
       sources."execa-0.7.0"
       sources."exit-hook-1.1.1"
       sources."extend-3.0.2"
-      sources."form-data-2.3.2"
+      sources."form-data-2.3.3"
       sources."fs.realpath-1.0.0"
       sources."function-bind-1.1.1"
       sources."get-stream-3.0.0"
       sources."glob-7.1.3"
       sources."global-dirs-0.1.1"
       sources."got-6.7.1"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."has-1.0.3"
       sources."has-ansi-2.0.0"
       sources."has-flag-3.0.0"
@@ -56199,8 +56371,8 @@ in
       sources."make-dir-1.3.0"
       sources."make-error-1.3.5"
       sources."make-error-cause-1.2.2"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimatch-3.0.4"
       sources."minimist-1.2.0"
       (sources."mkdirp-0.5.1" // {
@@ -56286,7 +56458,7 @@ in
       sources."util-deprecate-1.0.2"
       sources."wcwidth-1.0.1"
       sources."which-1.3.1"
-      sources."widest-line-2.0.0"
+      sources."widest-line-2.0.1"
       sources."wordwrap-1.0.0"
       sources."wrappy-1.0.2"
       sources."write-file-atomic-2.3.0"
@@ -56328,10 +56500,10 @@ in
   ungit = nodeEnv.buildNodePackage {
     name = "ungit";
     packageName = "ungit";
-    version = "1.4.34";
+    version = "1.4.36";
     src = fetchurl {
-      url = "https://registry.npmjs.org/ungit/-/ungit-1.4.34.tgz";
-      sha512 = "7sgDDNaWakL7tzp5NwENWHV0SekB6LzcW99nVv0CLthggQnw7wWDnSFAz9iHbBINNj14Sh3gscO7nd73qBtlgA==";
+      url = "https://registry.npmjs.org/ungit/-/ungit-1.4.36.tgz";
+      sha512 = "Tpr9qHQZX/e4Qhz4dg1c5Y/jOs911E2MengusvNxO9+kxaw3ua/j+U0FCcPdg4vTDFtEydCGli3kJCoiEbK48w==";
     };
     dependencies = [
       sources."abbrev-1.1.1"
@@ -56362,7 +56534,7 @@ in
       sources."base64id-1.0.0"
       sources."bcrypt-pbkdf-1.0.2"
       sources."better-assert-1.0.2"
-      sources."blob-0.0.4"
+      sources."blob-0.0.5"
       sources."bluebird-3.5.2"
       sources."blueimp-md5-2.10.0"
       sources."body-parser-1.18.3"
@@ -56434,7 +56606,7 @@ in
       sources."editions-2.0.2"
       sources."ee-first-1.1.1"
       sources."encodeurl-1.0.2"
-      (sources."engine.io-3.2.0" // {
+      (sources."engine.io-3.2.1" // {
         dependencies = [
           sources."debug-3.1.0"
         ];
@@ -56445,7 +56617,7 @@ in
           sources."debug-3.1.0"
         ];
       })
-      sources."engine.io-parser-2.1.2"
+      sources."engine.io-parser-2.1.3"
       (sources."errlop-1.0.3" // {
         dependencies = [
           sources."editions-1.3.4"
@@ -56493,7 +56665,7 @@ in
       sources."getmac-1.4.6"
       sources."getpass-0.1.7"
       sources."glob-7.1.3"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-schema-2.0.0"
       sources."har-validator-5.1.0"
       (sources."has-binary2-1.0.3" // {
@@ -56513,7 +56685,7 @@ in
       sources."http-errors-1.6.3"
       sources."http-signature-1.2.0"
       sources."iconv-lite-0.4.23"
-      sources."ignore-5.0.2"
+      sources."ignore-5.0.4"
       sources."indexof-0.0.1"
       sources."inflight-1.0.6"
       sources."inherits-2.0.3"
@@ -56562,8 +56734,8 @@ in
       sources."merge-descriptors-1.0.1"
       sources."methods-1.1.2"
       sources."mime-1.4.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."mimic-fn-1.2.0"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
@@ -56634,11 +56806,7 @@ in
           sources."combined-stream-1.0.7"
           sources."delayed-stream-1.0.0"
           sources."extend-3.0.2"
-          (sources."form-data-2.3.2" // {
-            dependencies = [
-              sources."combined-stream-1.0.6"
-            ];
-          })
+          sources."form-data-2.3.3"
         ];
       })
       sources."require-directory-2.1.1"
@@ -56685,8 +56853,8 @@ in
       sources."spdx-correct-3.0.2"
       sources."spdx-exceptions-2.2.0"
       sources."spdx-expression-parse-3.0.0"
-      sources."spdx-license-ids-3.0.1"
-      sources."sshpk-1.15.1"
+      sources."spdx-license-ids-3.0.2"
+      sources."sshpk-1.15.2"
       sources."ssri-5.3.0"
       sources."stack-trace-0.0.10"
       sources."statuses-1.5.0"
@@ -56697,12 +56865,12 @@ in
       sources."strip-json-comments-2.0.1"
       (sources."superagent-4.0.0-beta.5" // {
         dependencies = [
-          sources."combined-stream-1.0.6"
+          sources."combined-stream-1.0.7"
           sources."component-emitter-1.2.1"
           sources."cookiejar-2.1.2"
           sources."debug-4.1.0"
           sources."delayed-stream-1.0.0"
-          sources."form-data-2.3.2"
+          sources."form-data-2.3.3"
           sources."formidable-1.2.1"
           sources."mime-2.3.1"
           sources."ms-2.1.1"
@@ -56871,11 +57039,7 @@ in
       sources."filename-reserved-regex-2.0.0"
       sources."filenamify-2.1.0"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."fs-constants-1.0.0"
       sources."fs-extra-0.26.7"
       sources."fs.realpath-1.0.0"
@@ -56885,7 +57049,7 @@ in
       sources."git-clone-0.1.0"
       sources."glob-7.1.3"
       sources."got-6.7.1"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."graceful-readlink-1.0.1"
       sources."gray-matter-2.1.1"
       sources."handlebars-4.0.12"
@@ -56946,8 +57110,8 @@ in
           sources."supports-color-2.0.0"
         ];
       })
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."mimic-fn-1.2.0"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
@@ -56998,7 +57162,7 @@ in
       sources."signal-exit-3.0.2"
       sources."source-map-0.6.1"
       sources."sprintf-js-1.0.3"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       sources."stat-mode-0.2.2"
       sources."string-width-2.1.1"
       sources."string_decoder-1.1.1"
@@ -57057,19 +57221,18 @@ in
   "@vue/cli" = nodeEnv.buildNodePackage {
     name = "_at_vue_slash_cli";
     packageName = "@vue/cli";
-    version = "3.0.5";
+    version = "3.1.1";
     src = fetchurl {
-      url = "https://registry.npmjs.org/@vue/cli/-/cli-3.0.5.tgz";
-      sha512 = "wNwK6oosaMY5gCmzONatVAVLf8dMmpGqxoT1Z6ne0aBRg6gOUZ+XrLN6MiF34tlETvQ/XhHUC5d+YVWoBVlllQ==";
+      url = "https://registry.npmjs.org/@vue/cli/-/cli-3.1.1.tgz";
+      sha512 = "FUL6sBmg50/1Y5GtOxMeFniqkpDCXBm2rlVgL+64eN+N9qIOKMZDAtfTy/F/d3TUn9Bc1lvPO6/6Xm9m68TnEg==";
     };
     dependencies = [
       sources."@akryum/winattr-3.0.0"
       sources."@apollographql/apollo-upload-server-5.0.3"
-      sources."@apollographql/graphql-playground-html-1.6.0"
-      sources."@babel/runtime-7.1.2"
+      sources."@apollographql/graphql-playground-html-1.6.4"
       sources."@babel/runtime-corejs2-7.1.2"
       sources."@mrmlnc/readdir-enhanced-2.2.1"
-      sources."@nodelib/fs.stat-1.1.2"
+      sources."@nodelib/fs.stat-1.1.3"
       sources."@protobufjs/aspromise-1.1.2"
       sources."@protobufjs/base64-1.1.2"
       sources."@protobufjs/codegen-2.0.4"
@@ -57081,7 +57244,7 @@ in
       sources."@protobufjs/pool-1.1.0"
       sources."@protobufjs/utf8-1.1.0"
       sources."@types/accepts-1.3.5"
-      sources."@types/async-2.0.49"
+      sources."@types/async-2.0.50"
       sources."@types/body-parser-1.17.0"
       sources."@types/connect-3.4.32"
       sources."@types/cors-2.8.4"
@@ -57090,30 +57253,32 @@ in
       sources."@types/express-serve-static-core-4.16.0"
       sources."@types/long-4.0.0"
       sources."@types/mime-2.0.0"
-      sources."@types/node-10.11.7"
+      sources."@types/node-10.12.2"
       sources."@types/range-parser-1.2.2"
       sources."@types/serve-static-1.13.2"
       sources."@types/ws-5.1.2"
       sources."@types/zen-observable-0.8.0"
-      sources."@vue/cli-shared-utils-3.0.5"
-      (sources."@vue/cli-ui-3.0.5" // {
+      sources."@vue/cli-shared-utils-3.1.1"
+      (sources."@vue/cli-ui-3.1.1" // {
         dependencies = [
           sources."clone-2.1.2"
         ];
       })
-      sources."@vue/cli-ui-addon-webpack-3.0.5"
+      sources."@vue/cli-ui-addon-webpack-3.1.1"
+      sources."@vue/cli-ui-addon-widgets-3.1.1"
       sources."abbrev-1.1.1"
       sources."accepts-1.3.5"
+      sources."aggregate-error-1.0.0"
       sources."ajv-5.5.2"
       sources."ansi-align-2.0.0"
       sources."ansi-escapes-3.1.0"
       sources."ansi-regex-3.0.0"
       sources."ansi-styles-3.2.1"
       sources."anymatch-2.0.0"
-      sources."apollo-cache-1.1.17"
+      sources."apollo-cache-1.1.20"
       sources."apollo-cache-control-0.2.5"
-      sources."apollo-cache-inmemory-1.3.5"
-      sources."apollo-client-2.4.2"
+      sources."apollo-cache-inmemory-1.3.9"
+      sources."apollo-client-2.4.5"
       sources."apollo-datasource-0.1.3"
       sources."apollo-engine-reporting-0.0.6"
       sources."apollo-engine-reporting-protobuf-0.0.1"
@@ -57138,8 +57303,8 @@ in
         ];
       })
       sources."apollo-tracing-0.2.5"
-      sources."apollo-upload-client-8.1.0"
-      sources."apollo-utilities-1.0.21"
+      sources."apollo-upload-client-9.1.0"
+      sources."apollo-utilities-1.0.25"
       sources."argparse-1.0.10"
       sources."arr-diff-4.0.0"
       sources."arr-flatten-1.1.0"
@@ -57174,13 +57339,7 @@ in
       sources."base64-js-0.0.8"
       sources."bcrypt-pbkdf-1.0.2"
       sources."binary-extensions-1.12.0"
-      (sources."bl-1.2.2" // {
-        dependencies = [
-          sources."isarray-1.0.0"
-          sources."readable-stream-2.3.6"
-          sources."string_decoder-1.1.1"
-        ];
-      })
+      sources."bl-1.2.2"
       (sources."body-parser-1.18.3" // {
         dependencies = [
           sources."debug-2.6.9"
@@ -57189,18 +57348,20 @@ in
       sources."boxen-1.3.0"
       sources."brace-expansion-1.1.11"
       sources."braces-2.3.2"
-      (sources."buffer-3.6.0" // {
-        dependencies = [
-          sources."isarray-1.0.0"
-        ];
-      })
+      sources."buffer-3.6.0"
       sources."buffer-alloc-1.2.0"
       sources."buffer-alloc-unsafe-1.1.0"
       sources."buffer-crc32-0.2.13"
       sources."buffer-fill-1.0.0"
       sources."buffer-from-1.1.1"
       sources."builtins-1.0.3"
-      sources."busboy-0.2.14"
+      (sources."busboy-0.2.14" // {
+        dependencies = [
+          sources."isarray-0.0.1"
+          sources."readable-stream-1.1.14"
+          sources."string_decoder-0.10.31"
+        ];
+      })
       sources."bytes-3.0.0"
       sources."cache-base-1.0.1"
       sources."call-me-maybe-1.0.1"
@@ -57229,6 +57390,7 @@ in
           sources."kind-of-5.1.0"
         ];
       })
+      sources."clean-stack-1.3.0"
       sources."cli-boxes-1.0.0"
       sources."cli-cursor-2.1.0"
       sources."cli-spinners-1.3.1"
@@ -57253,10 +57415,12 @@ in
       sources."copy-descriptor-0.1.1"
       sources."core-js-2.5.7"
       sources."core-util-is-1.0.2"
-      sources."cors-2.8.4"
+      sources."cors-2.8.5"
       sources."create-error-class-3.0.2"
-      sources."cross-spawn-5.1.0"
+      sources."cross-spawn-6.0.5"
+      sources."cross-spawn-async-2.2.5"
       sources."crypto-random-string-1.0.0"
+      sources."csv-parser-1.12.1"
       sources."dashdash-1.14.1"
       (sources."debug-3.2.6" // {
         dependencies = [
@@ -57293,7 +57457,13 @@ in
       sources."depd-1.1.2"
       sources."deprecated-decorator-0.1.6"
       sources."destroy-1.0.4"
-      sources."dicer-0.2.5"
+      (sources."dicer-0.2.5" // {
+        dependencies = [
+          sources."isarray-0.0.1"
+          sources."readable-stream-1.1.14"
+          sources."string_decoder-0.10.31"
+        ];
+      })
       sources."diff-3.5.0"
       sources."dir-glob-2.0.0"
       sources."dot-prop-4.2.0"
@@ -57311,6 +57481,7 @@ in
       sources."ejs-2.6.1"
       sources."encodeurl-1.0.2"
       sources."end-of-stream-1.4.1"
+      sources."entities-1.1.2"
       sources."es-abstract-1.12.0"
       sources."es-to-primitive-1.2.0"
       sources."escape-html-1.0.3"
@@ -57322,9 +57493,9 @@ in
       sources."event-stream-3.3.6"
       sources."eventemitter3-3.1.0"
       sources."exec-sh-0.2.2"
-      (sources."execa-0.10.0" // {
+      (sources."execa-1.0.0" // {
         dependencies = [
-          sources."cross-spawn-6.0.5"
+          sources."get-stream-4.1.0"
         ];
       })
       (sources."expand-brackets-2.1.4" // {
@@ -57365,12 +57536,11 @@ in
           sources."define-property-1.0.0"
         ];
       })
-      sources."extract-files-3.1.0"
+      sources."extract-files-4.1.0"
       sources."extsprintf-1.3.0"
       sources."fast-deep-equal-1.1.0"
       sources."fast-glob-2.2.3"
       sources."fast-json-stable-stringify-2.0.0"
-      sources."fclone-1.0.11"
       sources."fd-slicer-1.1.0"
       sources."figures-2.0.0"
       sources."file-type-5.2.0"
@@ -57383,18 +57553,20 @@ in
           sources."statuses-1.4.0"
         ];
       })
+      (sources."fkill-5.3.0" // {
+        dependencies = [
+          sources."execa-0.10.0"
+        ];
+      })
       sources."flatmap-stream-0.1.1"
       sources."for-in-1.0.2"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."forwarded-0.1.2"
       sources."fragment-cache-0.2.1"
       sources."fresh-0.5.2"
       sources."from-0.1.7"
+      sources."from2-2.3.0"
       sources."fs-constants-1.0.0"
       sources."fs-exists-sync-0.1.0"
       sources."fs-extra-6.0.1"
@@ -57402,6 +57574,8 @@ in
       sources."fsevents-1.2.4"
       sources."fswin-2.17.1227"
       sources."function-bind-1.1.1"
+      sources."generate-function-1.1.0"
+      sources."generate-object-property-1.2.0"
       sources."get-proxy-2.1.0"
       sources."get-stream-3.0.0"
       sources."get-value-2.0.6"
@@ -57423,10 +57597,10 @@ in
       })
       sources."good-listener-1.2.2"
       sources."got-6.7.1"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."graceful-readlink-1.0.1"
-      sources."graphql-0.13.2"
-      sources."graphql-anywhere-4.1.19"
+      sources."graphql-14.0.2"
+      sources."graphql-anywhere-4.1.22"
       sources."graphql-extensions-0.2.1"
       sources."graphql-subscriptions-1.0.0"
       sources."graphql-tag-2.10.0"
@@ -57455,14 +57629,16 @@ in
       sources."ieee754-1.1.12"
       sources."ignore-3.3.10"
       sources."ignore-by-default-1.0.1"
-      sources."immutable-tuple-0.4.8"
+      sources."immutable-tuple-0.4.9"
       sources."import-global-0.1.0"
       sources."import-lazy-2.1.0"
       sources."imurmurhash-0.1.4"
+      sources."indent-string-3.2.0"
       sources."inflight-1.0.6"
       sources."inherits-2.0.3"
       sources."ini-1.3.5"
       sources."inquirer-6.2.0"
+      sources."into-stream-2.0.1"
       sources."ipaddr.js-1.8.0"
       sources."is-accessor-descriptor-1.0.0"
       sources."is-binary-path-1.0.1"
@@ -57489,6 +57665,7 @@ in
       sources."is-path-inside-1.0.1"
       sources."is-plain-object-2.0.4"
       sources."is-promise-2.1.0"
+      sources."is-property-1.0.2"
       sources."is-redirect-1.0.0"
       sources."is-regex-1.0.4"
       sources."is-retry-allowed-1.1.0"
@@ -57497,9 +57674,9 @@ in
       sources."is-typedarray-1.0.0"
       sources."is-windows-1.0.2"
       sources."is-wsl-1.1.0"
-      sources."isarray-0.0.1"
+      sources."isarray-1.0.0"
       sources."isbinaryfile-3.0.3"
-      sources."isemail-3.1.3"
+      sources."isemail-3.2.0"
       sources."isexe-2.0.0"
       sources."isobject-3.0.1"
       sources."isstream-0.1.2"
@@ -57536,7 +57713,7 @@ in
       sources."map-stream-0.0.7"
       sources."map-visit-1.0.0"
       sources."media-typer-0.3.0"
-      sources."merge-1.2.0"
+      sources."merge-1.2.1"
       sources."merge-descriptors-1.0.1"
       sources."merge2-1.2.3"
       sources."methods-1.1.2"
@@ -57547,8 +57724,8 @@ in
         ];
       })
       sources."mime-1.4.1"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."mimic-fn-1.2.0"
       sources."minimalistic-assert-1.0.1"
       sources."minimatch-3.0.4"
@@ -57566,19 +57743,25 @@ in
       sources."ms-2.0.0"
       sources."mute-stream-0.0.7"
       sources."nan-2.11.1"
-      sources."nanoid-1.3.0"
+      sources."nanoid-2.0.0"
       (sources."nanomatch-1.2.13" // {
         dependencies = [
           sources."extend-shallow-3.0.2"
           sources."is-extendable-1.0.1"
         ];
       })
+      sources."ndjson-1.5.0"
+      (sources."neat-csv-2.1.0" // {
+        dependencies = [
+          sources."get-stream-2.3.1"
+        ];
+      })
       sources."negotiator-0.6.1"
       sources."nice-try-1.0.5"
       sources."node-fetch-2.2.0"
       sources."node-ipc-9.1.1"
-      sources."node-notifier-5.2.1"
-      sources."nodemon-1.18.4"
+      sources."node-notifier-5.3.0"
+      sources."nodemon-1.18.5"
       sources."nopt-1.0.10"
       sources."normalize-path-2.1.1"
       sources."npm-conf-1.1.3"
@@ -57607,7 +57790,7 @@ in
       sources."once-1.4.0"
       sources."onetime-2.0.1"
       sources."opn-5.4.0"
-      sources."optimism-0.6.6"
+      sources."optimism-0.6.8"
       sources."ora-2.1.0"
       sources."os-tmpdir-1.0.2"
       sources."p-finally-1.0.0"
@@ -57626,10 +57809,16 @@ in
       sources."pause-stream-0.0.11"
       sources."pend-1.2.0"
       sources."performance-now-2.1.0"
+      (sources."pid-from-port-1.1.3" // {
+        dependencies = [
+          sources."cross-spawn-5.1.0"
+          sources."execa-0.9.0"
+        ];
+      })
       sources."pify-3.0.0"
       sources."pinkie-2.0.4"
       sources."pinkie-promise-2.0.1"
-      (sources."portfinder-1.0.17" // {
+      (sources."portfinder-1.0.19" // {
         dependencies = [
           sources."debug-2.6.9"
         ];
@@ -57638,27 +57827,24 @@ in
       sources."prepend-http-1.0.4"
       sources."prismjs-1.15.0"
       sources."private-0.1.8"
+      sources."process-exists-3.1.0"
       sources."process-nextick-args-2.0.0"
       sources."proto-list-1.2.4"
       sources."protobufjs-6.8.8"
       sources."proxy-addr-2.0.4"
+      sources."ps-list-4.1.0"
       sources."ps-tree-1.1.0"
       sources."pseudomap-1.0.2"
       sources."psl-1.1.29"
       sources."pstree.remy-1.1.0"
+      sources."pump-3.0.0"
       sources."punycode-2.1.1"
       sources."qs-6.5.2"
       sources."range-parser-1.2.0"
       sources."raw-body-2.3.3"
       sources."rc-1.2.8"
-      sources."readable-stream-1.1.14"
-      (sources."readdirp-2.2.1" // {
-        dependencies = [
-          sources."isarray-1.0.0"
-          sources."readable-stream-2.3.6"
-          sources."string_decoder-1.1.1"
-        ];
-      })
+      sources."readable-stream-2.3.6"
+      sources."readdirp-2.2.1"
       (sources."recast-0.15.5" // {
         dependencies = [
           sources."source-map-0.6.1"
@@ -57685,11 +57871,14 @@ in
       sources."ret-0.1.15"
       sources."retry-0.12.0"
       sources."rimraf-2.6.2"
+      sources."rss-parser-3.5.2"
       sources."run-async-2.3.0"
       sources."rxjs-6.3.3"
       sources."safe-buffer-5.1.2"
       sources."safe-regex-1.1.0"
       sources."safer-buffer-2.1.2"
+      sources."sax-1.2.4"
+      sources."sec-1.0.0"
       (sources."seek-bzip-1.0.5" // {
         dependencies = [
           sources."commander-2.8.1"
@@ -57711,7 +57900,7 @@ in
       sources."shebang-regex-1.0.0"
       sources."shell-quote-1.6.1"
       sources."shellwords-0.1.1"
-      sources."shortid-2.2.13"
+      sources."shortid-2.2.14"
       sources."signal-exit-3.0.2"
       sources."slash-2.0.0"
       (sources."snapdragon-0.8.2" // {
@@ -57757,8 +57946,9 @@ in
           sources."is-extendable-1.0.1"
         ];
       })
+      sources."split2-2.2.0"
       sources."sprintf-js-1.0.3"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       (sources."static-extend-0.1.2" // {
         dependencies = [
           sources."define-property-0.2.5"
@@ -57783,7 +57973,7 @@ in
       sources."streamsearch-0.1.2"
       sources."string-width-2.1.1"
       sources."string.prototype.padstart-3.0.0"
-      sources."string_decoder-0.10.31"
+      sources."string_decoder-1.1.1"
       sources."strip-ansi-4.0.0"
       sources."strip-dirs-2.1.0"
       sources."strip-eof-1.0.0"
@@ -57792,20 +57982,26 @@ in
       sources."subscriptions-transport-ws-0.9.15"
       sources."supports-color-5.5.0"
       sources."symbol-observable-1.2.0"
-      (sources."tar-stream-1.6.2" // {
+      sources."tar-stream-1.6.2"
+      (sources."taskkill-2.0.0" // {
         dependencies = [
-          sources."isarray-1.0.0"
-          sources."readable-stream-2.3.6"
-          sources."string_decoder-1.1.1"
+          sources."execa-0.1.1"
+        ];
+      })
+      (sources."tasklist-3.1.1" // {
+        dependencies = [
+          sources."pify-2.3.0"
         ];
       })
       (sources."term-size-1.2.0" // {
         dependencies = [
+          sources."cross-spawn-5.1.0"
           sources."execa-0.7.0"
         ];
       })
       sources."terminate-2.1.0"
       sources."through-2.3.8"
+      sources."through2-2.0.3"
       sources."timed-out-4.0.1"
       sources."tiny-emitter-2.0.2"
       sources."tmp-0.0.33"
@@ -57822,7 +58018,11 @@ in
         ];
       })
       sources."to-regex-range-2.1.1"
-      sources."topo-3.0.0"
+      (sources."topo-3.0.3" // {
+        dependencies = [
+          sources."hoek-6.0.1"
+        ];
+      })
       sources."touch-3.1.0"
       (sources."tough-cookie-2.4.3" // {
         dependencies = [
@@ -57857,7 +58057,6 @@ in
             ];
           })
           sources."has-values-0.1.4"
-          sources."isarray-1.0.0"
         ];
       })
       sources."unzip-response-2.0.1"
@@ -57874,15 +58073,17 @@ in
       sources."validate-npm-package-name-3.0.0"
       sources."vary-1.1.2"
       sources."verror-1.10.0"
-      sources."vue-cli-plugin-apollo-0.16.6"
+      sources."vue-cli-plugin-apollo-0.17.3"
       sources."watch-1.0.2"
       sources."wcwidth-1.0.1"
       sources."which-1.3.1"
-      sources."widest-line-2.0.0"
+      sources."widest-line-2.0.1"
       sources."wrappy-1.0.2"
       sources."write-file-atomic-2.3.0"
       sources."ws-5.2.2"
       sources."xdg-basedir-3.0.0"
+      sources."xml2js-0.4.19"
+      sources."xmlbuilder-9.0.7"
       sources."xtend-4.0.1"
       sources."yallist-2.1.2"
       (sources."yaml-front-matter-3.4.1" // {
@@ -57892,7 +58093,7 @@ in
       })
       sources."yauzl-2.10.0"
       sources."yn-2.0.0"
-      sources."zen-observable-0.8.9"
+      sources."zen-observable-0.8.11"
       sources."zen-observable-ts-0.8.10"
     ];
     buildInputs = globalBuildInputs;
@@ -57907,30 +58108,30 @@ in
   "@webassemblyjs/cli" = nodeEnv.buildNodePackage {
     name = "_at_webassemblyjs_slash_cli";
     packageName = "@webassemblyjs/cli";
-    version = "1.7.8";
+    version = "1.7.11";
     src = fetchurl {
-      url = "https://registry.npmjs.org/@webassemblyjs/cli/-/cli-1.7.8.tgz";
-      sha512 = "/zEE5vL2lVlZVv3XYLo6+yeEU5pqi8AByBWBVYSuPSRBu0bY9cTCRU4exS/Jd7bdbF9I3s1Moa1FRG1wCQErfA==";
+      url = "https://registry.npmjs.org/@webassemblyjs/cli/-/cli-1.7.11.tgz";
+      sha512 = "j2KPAIyvXa6fuOr5bQEEb8UHF7WCbEguia5BMJotgxNo37LA/1c4Do/rxFornYKkcmf5IOLjDr197SMUlys3+g==";
     };
     dependencies = [
-      sources."@webassemblyjs/ast-1.7.8"
-      sources."@webassemblyjs/floating-point-hex-parser-1.7.8"
-      sources."@webassemblyjs/helper-api-error-1.7.8"
-      sources."@webassemblyjs/helper-code-frame-1.7.8"
-      sources."@webassemblyjs/helper-flaten-ast-1.7.8"
-      sources."@webassemblyjs/helper-fsm-1.7.8"
-      sources."@webassemblyjs/helper-module-context-1.7.8"
-      sources."@webassemblyjs/helper-wasm-bytecode-1.7.8"
-      sources."@webassemblyjs/ieee754-1.7.8"
-      sources."@webassemblyjs/leb128-1.7.8"
-      sources."@webassemblyjs/utf8-1.7.8"
-      sources."@webassemblyjs/validation-1.7.8"
-      sources."@webassemblyjs/wasm-parser-1.7.8"
-      sources."@webassemblyjs/wast-parser-1.7.8"
-      sources."@webassemblyjs/wast-printer-1.7.8"
+      sources."@webassemblyjs/ast-1.7.11"
+      sources."@webassemblyjs/floating-point-hex-parser-1.7.11"
+      sources."@webassemblyjs/helper-api-error-1.7.11"
+      sources."@webassemblyjs/helper-code-frame-1.7.11"
+      sources."@webassemblyjs/helper-flaten-ast-1.7.11"
+      sources."@webassemblyjs/helper-fsm-1.7.11"
+      sources."@webassemblyjs/helper-module-context-1.7.11"
+      sources."@webassemblyjs/helper-wasm-bytecode-1.7.11"
+      sources."@webassemblyjs/ieee754-1.7.11"
+      sources."@webassemblyjs/leb128-1.7.11"
+      sources."@webassemblyjs/utf8-1.7.11"
+      sources."@webassemblyjs/validation-1.7.11"
+      sources."@webassemblyjs/wasm-parser-1.7.11"
+      sources."@webassemblyjs/wast-parser-1.7.11"
+      sources."@webassemblyjs/wast-printer-1.7.11"
       sources."@xtuc/ieee754-1.2.0"
       sources."@xtuc/long-4.2.1"
-      sources."webassemblyjs-1.7.8"
+      sources."webassemblyjs-1.7.11"
     ];
     buildInputs = globalBuildInputs;
     meta = {
@@ -57943,30 +58144,30 @@ in
   "@webassemblyjs/repl" = nodeEnv.buildNodePackage {
     name = "_at_webassemblyjs_slash_repl";
     packageName = "@webassemblyjs/repl";
-    version = "1.7.8";
+    version = "1.7.11";
     src = fetchurl {
-      url = "https://registry.npmjs.org/@webassemblyjs/repl/-/repl-1.7.8.tgz";
-      sha512 = "IClmDKT+XgTiJ3lNaaXbHBAt2LqabugJmsabtF8TIlulG5Y5NEOOeJGjm56/rmwuW3/ul/zvaLQ1pFpU3WEIXg==";
+      url = "https://registry.npmjs.org/@webassemblyjs/repl/-/repl-1.7.11.tgz";
+      sha512 = "rU4ikGGLw6rXQtYLzAvy3GDGpf/0FhKLmVUc3uQJbMQwDvW6FT8kp7sUiZYCwr/UECUurjj2fnGu4FDuIi2Iqg==";
     };
     dependencies = [
-      sources."@webassemblyjs/ast-1.7.8"
-      sources."@webassemblyjs/floating-point-hex-parser-1.7.8"
-      sources."@webassemblyjs/helper-api-error-1.7.8"
-      sources."@webassemblyjs/helper-code-frame-1.7.8"
-      sources."@webassemblyjs/helper-flaten-ast-1.7.8"
-      sources."@webassemblyjs/helper-fsm-1.7.8"
-      sources."@webassemblyjs/helper-module-context-1.7.8"
-      sources."@webassemblyjs/helper-wasm-bytecode-1.7.8"
-      sources."@webassemblyjs/ieee754-1.7.8"
-      sources."@webassemblyjs/leb128-1.7.8"
-      sources."@webassemblyjs/utf8-1.7.8"
-      sources."@webassemblyjs/validation-1.7.8"
-      sources."@webassemblyjs/wasm-parser-1.7.8"
-      sources."@webassemblyjs/wast-parser-1.7.8"
-      sources."@webassemblyjs/wast-printer-1.7.8"
+      sources."@webassemblyjs/ast-1.7.11"
+      sources."@webassemblyjs/floating-point-hex-parser-1.7.11"
+      sources."@webassemblyjs/helper-api-error-1.7.11"
+      sources."@webassemblyjs/helper-code-frame-1.7.11"
+      sources."@webassemblyjs/helper-flaten-ast-1.7.11"
+      sources."@webassemblyjs/helper-fsm-1.7.11"
+      sources."@webassemblyjs/helper-module-context-1.7.11"
+      sources."@webassemblyjs/helper-wasm-bytecode-1.7.11"
+      sources."@webassemblyjs/ieee754-1.7.11"
+      sources."@webassemblyjs/leb128-1.7.11"
+      sources."@webassemblyjs/utf8-1.7.11"
+      sources."@webassemblyjs/validation-1.7.11"
+      sources."@webassemblyjs/wasm-parser-1.7.11"
+      sources."@webassemblyjs/wast-parser-1.7.11"
+      sources."@webassemblyjs/wast-printer-1.7.11"
       sources."@xtuc/ieee754-1.2.0"
       sources."@xtuc/long-4.2.1"
-      sources."webassemblyjs-1.7.8"
+      sources."webassemblyjs-1.7.11"
     ];
     buildInputs = globalBuildInputs;
     meta = {
@@ -57979,28 +58180,28 @@ in
   "@webassemblyjs/wasm-strip" = nodeEnv.buildNodePackage {
     name = "_at_webassemblyjs_slash_wasm-strip";
     packageName = "@webassemblyjs/wasm-strip";
-    version = "1.7.8";
+    version = "1.7.11";
     src = fetchurl {
-      url = "https://registry.npmjs.org/@webassemblyjs/wasm-strip/-/wasm-strip-1.7.8.tgz";
-      sha512 = "ZhPzbEX3UKaLjJ7hjPVjNG3tNjiD7B8eriTR11yrctdyD5vAOVoyrUEsBPX0WadxDOzOsGZmSbFD1SHBjJT8jQ==";
+      url = "https://registry.npmjs.org/@webassemblyjs/wasm-strip/-/wasm-strip-1.7.11.tgz";
+      sha512 = "mHlWMZuNz/Or8GHH38HhMQ7O4m9N4XpVjL3I+oQ6emVyJqHvvgybn76lTaI8mKaEh3e4EmaUeIC9gknEhdaJVA==";
     };
     dependencies = [
-      sources."@webassemblyjs/ast-1.7.8"
-      sources."@webassemblyjs/floating-point-hex-parser-1.7.8"
-      sources."@webassemblyjs/helper-api-error-1.7.8"
-      sources."@webassemblyjs/helper-buffer-1.7.8"
-      sources."@webassemblyjs/helper-code-frame-1.7.8"
-      sources."@webassemblyjs/helper-fsm-1.7.8"
-      sources."@webassemblyjs/helper-module-context-1.7.8"
-      sources."@webassemblyjs/helper-wasm-bytecode-1.7.8"
-      sources."@webassemblyjs/helper-wasm-section-1.7.8"
-      sources."@webassemblyjs/ieee754-1.7.8"
-      sources."@webassemblyjs/leb128-1.7.8"
-      sources."@webassemblyjs/utf8-1.7.8"
-      sources."@webassemblyjs/wasm-gen-1.7.8"
-      sources."@webassemblyjs/wasm-parser-1.7.8"
-      sources."@webassemblyjs/wast-parser-1.7.8"
-      sources."@webassemblyjs/wast-printer-1.7.8"
+      sources."@webassemblyjs/ast-1.7.11"
+      sources."@webassemblyjs/floating-point-hex-parser-1.7.11"
+      sources."@webassemblyjs/helper-api-error-1.7.11"
+      sources."@webassemblyjs/helper-buffer-1.7.11"
+      sources."@webassemblyjs/helper-code-frame-1.7.11"
+      sources."@webassemblyjs/helper-fsm-1.7.11"
+      sources."@webassemblyjs/helper-module-context-1.7.11"
+      sources."@webassemblyjs/helper-wasm-bytecode-1.7.11"
+      sources."@webassemblyjs/helper-wasm-section-1.7.11"
+      sources."@webassemblyjs/ieee754-1.7.11"
+      sources."@webassemblyjs/leb128-1.7.11"
+      sources."@webassemblyjs/utf8-1.7.11"
+      sources."@webassemblyjs/wasm-gen-1.7.11"
+      sources."@webassemblyjs/wasm-parser-1.7.11"
+      sources."@webassemblyjs/wast-parser-1.7.11"
+      sources."@webassemblyjs/wast-printer-1.7.11"
       sources."@xtuc/ieee754-1.2.0"
       sources."@xtuc/long-4.2.1"
     ];
@@ -58015,10 +58216,10 @@ in
   "@webassemblyjs/wasm-text-gen" = nodeEnv.buildNodePackage {
     name = "_at_webassemblyjs_slash_wasm-text-gen";
     packageName = "@webassemblyjs/wasm-text-gen";
-    version = "1.7.8";
+    version = "1.7.11";
     src = fetchurl {
-      url = "https://registry.npmjs.org/@webassemblyjs/wasm-text-gen/-/wasm-text-gen-1.7.8.tgz";
-      sha512 = "cDzQh/rniwchQfzGQriAg7Io2xqEu5s1Po29jMkRfJse4OFbh54aWcbKk2DO0ph+9lbNQZ0VYTPBP5NGIKqNmw==";
+      url = "https://registry.npmjs.org/@webassemblyjs/wasm-text-gen/-/wasm-text-gen-1.7.11.tgz";
+      sha512 = "hU3q8os4NyVxC0QpDcaPyUqsfL3aMw4vjIxhw83QbBUo/nJxqn7hQ5tcB/YiHpUxASrlEAt5dcuIupdto84DZA==";
     };
     dependencies = [
       sources."@babel/code-frame-7.0.0"
@@ -58027,19 +58228,19 @@ in
       sources."@babel/parser-7.1.3"
       sources."@babel/template-7.1.2"
       sources."@babel/types-7.1.3"
-      sources."@webassemblyjs/ast-1.7.8"
-      sources."@webassemblyjs/floating-point-hex-parser-1.7.8"
-      sources."@webassemblyjs/helper-api-error-1.7.8"
-      sources."@webassemblyjs/helper-code-frame-1.7.8"
-      sources."@webassemblyjs/helper-fsm-1.7.8"
-      sources."@webassemblyjs/helper-module-context-1.7.8"
-      sources."@webassemblyjs/helper-wasm-bytecode-1.7.8"
-      sources."@webassemblyjs/ieee754-1.7.8"
-      sources."@webassemblyjs/leb128-1.7.8"
-      sources."@webassemblyjs/utf8-1.7.8"
-      sources."@webassemblyjs/wasm-parser-1.7.8"
-      sources."@webassemblyjs/wast-parser-1.7.8"
-      sources."@webassemblyjs/wast-printer-1.7.8"
+      sources."@webassemblyjs/ast-1.7.11"
+      sources."@webassemblyjs/floating-point-hex-parser-1.7.11"
+      sources."@webassemblyjs/helper-api-error-1.7.11"
+      sources."@webassemblyjs/helper-code-frame-1.7.11"
+      sources."@webassemblyjs/helper-fsm-1.7.11"
+      sources."@webassemblyjs/helper-module-context-1.7.11"
+      sources."@webassemblyjs/helper-wasm-bytecode-1.7.11"
+      sources."@webassemblyjs/ieee754-1.7.11"
+      sources."@webassemblyjs/leb128-1.7.11"
+      sources."@webassemblyjs/utf8-1.7.11"
+      sources."@webassemblyjs/wasm-parser-1.7.11"
+      sources."@webassemblyjs/wast-parser-1.7.11"
+      sources."@webassemblyjs/wast-printer-1.7.11"
       sources."@xtuc/ieee754-1.2.0"
       sources."@xtuc/long-4.2.1"
       sources."ansi-styles-3.2.1"
@@ -58069,21 +58270,21 @@ in
   "@webassemblyjs/wast-refmt" = nodeEnv.buildNodePackage {
     name = "_at_webassemblyjs_slash_wast-refmt";
     packageName = "@webassemblyjs/wast-refmt";
-    version = "1.7.8";
+    version = "1.7.11";
     src = fetchurl {
-      url = "https://registry.npmjs.org/@webassemblyjs/wast-refmt/-/wast-refmt-1.7.8.tgz";
-      sha512 = "eSkc1/NnfbMYQP/DQaC2W0/DEY/TO4reAS/F/v2cnafFMBrwJ8xQCQwr9IAMiez1aKKYZmL4kyRRbU/0Q9Qbtg==";
+      url = "https://registry.npmjs.org/@webassemblyjs/wast-refmt/-/wast-refmt-1.7.11.tgz";
+      sha512 = "o5PX9iAsVyEjt5HptTCyHPctSs3J17l33bGSSOejqEZpdRbKqPF3+5AXbBflU4eDOEU1daKqbVq4bRAYcH6dfg==";
     };
     dependencies = [
-      sources."@webassemblyjs/ast-1.7.8"
-      sources."@webassemblyjs/floating-point-hex-parser-1.7.8"
-      sources."@webassemblyjs/helper-api-error-1.7.8"
-      sources."@webassemblyjs/helper-code-frame-1.7.8"
-      sources."@webassemblyjs/helper-fsm-1.7.8"
-      sources."@webassemblyjs/helper-module-context-1.7.8"
-      sources."@webassemblyjs/helper-wasm-bytecode-1.7.8"
-      sources."@webassemblyjs/wast-parser-1.7.8"
-      sources."@webassemblyjs/wast-printer-1.7.8"
+      sources."@webassemblyjs/ast-1.7.11"
+      sources."@webassemblyjs/floating-point-hex-parser-1.7.11"
+      sources."@webassemblyjs/helper-api-error-1.7.11"
+      sources."@webassemblyjs/helper-code-frame-1.7.11"
+      sources."@webassemblyjs/helper-fsm-1.7.11"
+      sources."@webassemblyjs/helper-module-context-1.7.11"
+      sources."@webassemblyjs/helper-wasm-bytecode-1.7.11"
+      sources."@webassemblyjs/wast-parser-1.7.11"
+      sources."@webassemblyjs/wast-printer-1.7.11"
       sources."@xtuc/long-4.2.1"
     ];
     buildInputs = globalBuildInputs;
@@ -58159,7 +58360,7 @@ in
         ];
       })
       sources."glob-7.1.3"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."har-validator-2.0.6"
       sources."has-ansi-2.0.0"
       sources."hasha-2.2.0"
@@ -58190,8 +58391,8 @@ in
       sources."kew-0.1.7"
       sources."klaw-1.3.1"
       sources."lodash-4.17.11"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."minimatch-3.0.4"
       sources."minimist-0.0.8"
       sources."mkdirp-0.3.5"
@@ -58222,7 +58423,7 @@ in
       sources."safer-buffer-2.1.2"
       sources."semver-2.3.2"
       sources."sntp-1.0.9"
-      (sources."sshpk-1.15.1" // {
+      (sources."sshpk-1.15.2" // {
         dependencies = [
           sources."assert-plus-1.0.0"
         ];
@@ -58261,35 +58462,35 @@ in
   webpack = nodeEnv.buildNodePackage {
     name = "webpack";
     packageName = "webpack";
-    version = "4.20.2";
+    version = "4.24.0";
     src = fetchurl {
-      url = "https://registry.npmjs.org/webpack/-/webpack-4.20.2.tgz";
-      sha512 = "75WFUMblcWYcocjSLlXCb71QuGyH7egdBZu50FtBGl2Nso8CK3Ej+J7bTZz2FPFq5l6fzCisD9modB7t30ikuA==";
+      url = "https://registry.npmjs.org/webpack/-/webpack-4.24.0.tgz";
+      sha512 = "Xur0l8nBETnW+DjpFqSGME1jNXxEPVETl30k1lWAsbnukVJdq330/i3PDOLPUtVl/E/cciiOp5uW098hFfQLQA==";
     };
     dependencies = [
-      sources."@webassemblyjs/ast-1.7.8"
-      sources."@webassemblyjs/floating-point-hex-parser-1.7.8"
-      sources."@webassemblyjs/helper-api-error-1.7.8"
-      sources."@webassemblyjs/helper-buffer-1.7.8"
-      sources."@webassemblyjs/helper-code-frame-1.7.8"
-      sources."@webassemblyjs/helper-fsm-1.7.8"
-      sources."@webassemblyjs/helper-module-context-1.7.8"
-      sources."@webassemblyjs/helper-wasm-bytecode-1.7.8"
-      sources."@webassemblyjs/helper-wasm-section-1.7.8"
-      sources."@webassemblyjs/ieee754-1.7.8"
-      sources."@webassemblyjs/leb128-1.7.8"
-      sources."@webassemblyjs/utf8-1.7.8"
-      sources."@webassemblyjs/wasm-edit-1.7.8"
-      sources."@webassemblyjs/wasm-gen-1.7.8"
-      sources."@webassemblyjs/wasm-opt-1.7.8"
-      sources."@webassemblyjs/wasm-parser-1.7.8"
-      sources."@webassemblyjs/wast-parser-1.7.8"
-      sources."@webassemblyjs/wast-printer-1.7.8"
+      sources."@webassemblyjs/ast-1.7.11"
+      sources."@webassemblyjs/floating-point-hex-parser-1.7.11"
+      sources."@webassemblyjs/helper-api-error-1.7.11"
+      sources."@webassemblyjs/helper-buffer-1.7.11"
+      sources."@webassemblyjs/helper-code-frame-1.7.11"
+      sources."@webassemblyjs/helper-fsm-1.7.11"
+      sources."@webassemblyjs/helper-module-context-1.7.11"
+      sources."@webassemblyjs/helper-wasm-bytecode-1.7.11"
+      sources."@webassemblyjs/helper-wasm-section-1.7.11"
+      sources."@webassemblyjs/ieee754-1.7.11"
+      sources."@webassemblyjs/leb128-1.7.11"
+      sources."@webassemblyjs/utf8-1.7.11"
+      sources."@webassemblyjs/wasm-edit-1.7.11"
+      sources."@webassemblyjs/wasm-gen-1.7.11"
+      sources."@webassemblyjs/wasm-opt-1.7.11"
+      sources."@webassemblyjs/wasm-parser-1.7.11"
+      sources."@webassemblyjs/wast-parser-1.7.11"
+      sources."@webassemblyjs/wast-printer-1.7.11"
       sources."@xtuc/ieee754-1.2.0"
       sources."@xtuc/long-4.2.1"
       sources."acorn-5.7.3"
       sources."acorn-dynamic-import-3.0.0"
-      sources."ajv-6.5.4"
+      sources."ajv-6.5.5"
       sources."ajv-keywords-3.2.0"
       sources."anymatch-2.0.0"
       sources."aproba-1.2.0"
@@ -58444,7 +58645,7 @@ in
           sources."is-glob-3.1.0"
         ];
       })
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."has-value-1.0.0"
       (sources."has-values-1.0.0" // {
         dependencies = [
@@ -58820,7 +59021,7 @@ in
       sources."flatten-1.0.2"
       (sources."fs-chunk-store-1.7.0" // {
         dependencies = [
-          sources."thunky-1.0.2"
+          sources."thunky-1.0.3"
         ];
       })
       sources."fs.realpath-1.0.0"
@@ -58882,7 +59083,7 @@ in
       sources."ms-2.0.0"
       (sources."multicast-dns-6.2.3" // {
         dependencies = [
-          sources."thunky-1.0.2"
+          sources."thunky-1.0.3"
         ];
       })
       (sources."multistream-2.1.1" // {
@@ -59030,7 +59231,7 @@ in
     dependencies = [
       sources."@cliqz-oss/firefox-client-0.3.1"
       sources."@cliqz-oss/node-firefox-connect-1.2.1"
-      sources."@types/node-10.11.7"
+      sources."@types/node-10.12.2"
       sources."@yarnpkg/lockfile-1.1.0"
       sources."JSONSelect-0.2.1"
       sources."abbrev-1.1.1"
@@ -59074,9 +59275,14 @@ in
       (sources."archiver-2.1.1" // {
         dependencies = [
           sources."async-2.6.1"
+          sources."readable-stream-2.3.6"
+        ];
+      })
+      (sources."archiver-utils-1.3.0" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
         ];
       })
-      sources."archiver-utils-1.3.0"
       sources."archy-1.0.0"
       sources."argparse-1.0.10"
       sources."arr-diff-4.0.0"
@@ -59135,7 +59341,11 @@ in
       sources."base64-js-1.3.0"
       sources."bcrypt-pbkdf-1.0.2"
       sources."binary-extensions-1.12.0"
-      sources."bl-1.2.2"
+      (sources."bl-1.2.2" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
+        ];
+      })
       sources."bluebird-2.9.34"
       sources."boolbase-1.0.0"
       sources."boxen-1.3.0"
@@ -59210,22 +59420,34 @@ in
       sources."commander-2.19.0"
       sources."common-tags-1.8.0"
       sources."component-emitter-1.2.1"
-      sources."compress-commons-1.2.2"
+      (sources."compress-commons-1.2.2" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
+        ];
+      })
       sources."concat-map-0.0.1"
-      sources."concat-stream-1.6.2"
+      (sources."concat-stream-1.6.2" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
+        ];
+      })
       sources."configstore-3.1.2"
       sources."convert-source-map-1.6.0"
       sources."copy-descriptor-0.1.1"
       sources."core-js-2.5.7"
       sources."core-util-is-1.0.2"
       sources."crc-3.8.0"
-      sources."crc32-stream-2.0.0"
+      (sources."crc32-stream-2.0.0" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
+        ];
+      })
       sources."create-error-class-3.0.2"
       sources."cross-spawn-6.0.5"
       sources."crx-parser-0.1.2"
       sources."crypto-random-string-1.0.0"
       sources."css-select-1.2.0"
-      sources."css-what-2.1.0"
+      sources."css-what-2.1.2"
       sources."d-1.0.0"
       sources."dashdash-1.14.1"
       sources."data-uri-to-buffer-1.2.0"
@@ -59275,7 +59497,7 @@ in
       sources."email-validator-2.0.4"
       sources."encoding-0.1.12"
       sources."end-of-stream-1.4.1"
-      sources."entities-1.1.1"
+      sources."entities-1.1.2"
       sources."error-ex-1.3.2"
       sources."es-abstract-1.12.0"
       sources."es-to-primitive-1.2.0"
@@ -59407,18 +59629,18 @@ in
           sources."async-2.5.0"
         ];
       })
-      sources."first-chunk-stream-2.0.0"
+      (sources."first-chunk-stream-2.0.0" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
+        ];
+      })
       sources."flat-cache-1.3.0"
       sources."flatstr-1.0.8"
       sources."fluent-syntax-0.7.0"
       sources."for-in-1.0.2"
       sources."for-own-1.0.0"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."fragment-cache-0.2.1"
       sources."fs-constants-1.0.0"
       sources."fs-extra-4.0.3"
@@ -59445,12 +59667,17 @@ in
       sources."generate-object-property-1.2.0"
       sources."get-caller-file-1.0.3"
       sources."get-stream-3.0.0"
-      sources."get-uri-2.0.2"
+      (sources."get-uri-2.0.2" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
+        ];
+      })
       sources."get-value-2.0.6"
       sources."getpass-0.1.7"
       sources."gettext-parser-1.1.0"
       (sources."git-rev-sync-1.9.1" // {
         dependencies = [
+          sources."graceful-fs-4.1.11"
           sources."shelljs-0.7.7"
         ];
       })
@@ -59464,7 +59691,7 @@ in
       sources."globals-9.18.0"
       sources."globby-5.0.0"
       sources."got-6.7.1"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."graceful-readlink-1.0.1"
       sources."graphlib-2.1.5"
       sources."growly-1.3.0"
@@ -59494,7 +59721,7 @@ in
       })
       sources."home-or-tmp-2.0.0"
       sources."hosted-git-info-2.7.1"
-      sources."htmlparser2-3.9.2"
+      sources."htmlparser2-3.10.0"
       sources."http-errors-1.6.3"
       (sources."http-proxy-agent-2.1.0" // {
         dependencies = [
@@ -59624,7 +59851,11 @@ in
       sources."kind-of-3.2.2"
       sources."latest-version-3.1.0"
       sources."lazy-cache-0.2.7"
-      sources."lazystream-1.0.0"
+      (sources."lazystream-1.0.0" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
+        ];
+      })
       sources."lcid-2.0.0"
       sources."levn-0.3.0"
       sources."lie-3.1.1"
@@ -59669,8 +59900,8 @@ in
           sources."kind-of-6.0.2"
         ];
       })
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."mimic-fn-1.2.0"
       sources."minimatch-3.0.4"
       sources."minimist-1.2.0"
@@ -59740,7 +59971,7 @@ in
       sources."normalize-package-data-2.4.0"
       sources."normalize-path-2.1.1"
       sources."npm-run-path-2.0.2"
-      sources."nth-check-1.0.1"
+      sources."nth-check-1.0.2"
       sources."number-is-nan-1.0.1"
       sources."oauth-sign-0.9.0"
       sources."object-assign-4.1.1"
@@ -59817,7 +60048,7 @@ in
       sources."probe-image-size-4.0.0"
       sources."process-0.11.10"
       sources."process-nextick-args-2.0.0"
-      sources."progress-2.0.0"
+      sources."progress-2.0.1"
       sources."promise-7.3.1"
       (sources."proxy-agent-2.3.1" // {
         dependencies = [
@@ -59831,7 +60062,7 @@ in
       sources."pump-3.0.0"
       sources."punycode-2.1.1"
       sources."qs-6.5.2"
-      sources."quick-format-unescaped-3.0.0"
+      sources."quick-format-unescaped-3.0.1"
       (sources."raw-body-2.3.3" // {
         dependencies = [
           sources."iconv-lite-0.4.23"
@@ -59845,8 +60076,12 @@ in
           sources."path-exists-2.1.0"
         ];
       })
-      sources."readable-stream-2.3.6"
-      sources."readdirp-2.2.1"
+      sources."readable-stream-3.0.6"
+      (sources."readdirp-2.2.1" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
+        ];
+      })
       (sources."readline2-1.0.1" // {
         dependencies = [
           sources."mute-stream-0.0.5"
@@ -59958,7 +60193,7 @@ in
         ];
       })
       sources."snapdragon-util-3.0.1"
-      (sources."snyk-1.103.4" // {
+      (sources."snyk-1.106.1" // {
         dependencies = [
           sources."ansi-regex-3.0.0"
           sources."ansi-styles-3.2.1"
@@ -59979,13 +60214,13 @@ in
           sources."ms-2.1.1"
         ];
       })
-      (sources."snyk-docker-plugin-1.12.0" // {
+      (sources."snyk-docker-plugin-1.12.1" // {
         dependencies = [
           sources."debug-3.2.6"
           sources."ms-2.1.1"
         ];
       })
-      sources."snyk-go-plugin-1.5.2"
+      sources."snyk-go-plugin-1.6.0"
       sources."snyk-gradle-plugin-2.1.0"
       (sources."snyk-module-1.8.2" // {
         dependencies = [
@@ -60019,7 +60254,7 @@ in
           sources."ms-2.1.1"
         ];
       })
-      sources."snyk-python-plugin-1.8.2"
+      sources."snyk-python-plugin-1.9.0"
       (sources."snyk-resolve-1.0.1" // {
         dependencies = [
           sources."debug-3.2.6"
@@ -60056,11 +60291,11 @@ in
       sources."spdx-correct-3.0.2"
       sources."spdx-exceptions-2.2.0"
       sources."spdx-expression-parse-3.0.0"
-      sources."spdx-license-ids-3.0.1"
+      sources."spdx-license-ids-3.0.2"
       sources."split-0.3.3"
       sources."split-string-3.1.0"
       sources."sprintf-js-1.0.3"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       (sources."static-extend-0.1.2" // {
         dependencies = [
           sources."define-property-0.2.5"
@@ -60105,7 +60340,11 @@ in
       sources."supports-color-2.0.0"
       sources."symbol-observable-1.0.1"
       sources."table-4.0.3"
-      sources."tar-stream-1.6.2"
+      (sources."tar-stream-1.6.2" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
+        ];
+      })
       sources."temp-dir-1.0.0"
       sources."tempfile-2.0.0"
       (sources."term-size-1.2.0" // {
@@ -60183,7 +60422,7 @@ in
       sources."when-3.7.7"
       sources."which-1.3.1"
       sources."which-module-2.0.0"
-      sources."widest-line-2.0.0"
+      sources."widest-line-2.0.1"
       sources."win-release-1.1.1"
       sources."window-size-0.1.4"
       sources."winreg-0.0.12"
@@ -60226,7 +60465,11 @@ in
           sources."jszip-2.6.1"
         ];
       })
-      sources."zip-stream-1.2.0"
+      (sources."zip-stream-1.2.0" // {
+        dependencies = [
+          sources."readable-stream-2.3.6"
+        ];
+      })
     ];
     buildInputs = globalBuildInputs;
     meta = {
@@ -60257,10 +60500,10 @@ in
   yarn = nodeEnv.buildNodePackage {
     name = "yarn";
     packageName = "yarn";
-    version = "1.10.1";
+    version = "1.12.1";
     src = fetchurl {
-      url = "https://registry.npmjs.org/yarn/-/yarn-1.10.1.tgz";
-      sha512 = "EH0H1fyfFxkE4UpG4b+VCaVY4I488I2EyQNmGjGGKmvsSIb0G3b+1IcfGYPI2gqa1du43g4ZA3jH8fXlq6oVxg==";
+      url = "https://registry.npmjs.org/yarn/-/yarn-1.12.1.tgz";
+      sha512 = "vdVLrYWx73k4QR8ZpQQ3HJg/X8aAunjUHuPlADR/ogmZOhnqgAdETPz0e/Df+MW8Dno7F1dOxS5e3G6niobumw==";
     };
     buildInputs = globalBuildInputs;
     meta = {
@@ -60281,7 +60524,7 @@ in
     };
     dependencies = [
       sources."@mrmlnc/readdir-enhanced-2.2.1"
-      sources."@nodelib/fs.stat-1.1.2"
+      sources."@nodelib/fs.stat-1.1.3"
       sources."@sindresorhus/is-0.7.0"
       sources."aggregate-error-1.0.0"
       sources."ajv-5.5.2"
@@ -60477,11 +60720,7 @@ in
       sources."for-in-1.0.2"
       sources."foreachasync-3.0.0"
       sources."forever-agent-0.6.1"
-      (sources."form-data-2.3.2" // {
-        dependencies = [
-          sources."combined-stream-1.0.6"
-        ];
-      })
+      sources."form-data-2.3.3"
       sources."fragment-cache-0.2.1"
       sources."from2-2.3.0"
       sources."fs.realpath-1.0.0"
@@ -60502,7 +60741,7 @@ in
       sources."global-tunnel-ng-2.6.0"
       sources."globby-8.0.1"
       sources."got-8.3.2"
-      sources."graceful-fs-4.1.11"
+      sources."graceful-fs-4.1.15"
       sources."grouped-queue-0.3.3"
       sources."har-schema-2.0.0"
       sources."har-validator-5.1.0"
@@ -60634,8 +60873,8 @@ in
       })
       sources."merge2-1.2.3"
       sources."micromatch-3.1.10"
-      sources."mime-db-1.36.0"
-      sources."mime-types-2.1.20"
+      sources."mime-db-1.37.0"
+      sources."mime-types-2.1.21"
       sources."mimic-fn-1.2.0"
       sources."mimic-response-1.0.1"
       sources."minimatch-3.0.4"
@@ -60833,9 +61072,9 @@ in
       sources."spdx-correct-3.0.2"
       sources."spdx-exceptions-2.2.0"
       sources."spdx-expression-parse-3.0.0"
-      sources."spdx-license-ids-3.0.1"
+      sources."spdx-license-ids-3.0.2"
       sources."split-string-3.1.0"
-      sources."sshpk-1.15.1"
+      sources."sshpk-1.15.2"
       (sources."static-extend-0.1.2" // {
         dependencies = [
           sources."define-property-0.2.5"
@@ -60959,7 +61198,7 @@ in
       })
       sources."walk-2.3.14"
       sources."which-1.3.1"
-      sources."widest-line-2.0.0"
+      sources."widest-line-2.0.1"
       sources."win-release-1.1.1"
       (sources."wrap-ansi-2.1.0" // {
         dependencies = [
@@ -60981,7 +61220,7 @@ in
         ];
       })
       sources."yeoman-doctor-3.0.2"
-      (sources."yeoman-environment-2.3.3" // {
+      (sources."yeoman-environment-2.3.4" // {
         dependencies = [
           sources."debug-3.2.6"
           sources."ms-2.1.1"

From 95b2b6f541310ffff9040cdc8cf6f70d7a5ceee5 Mon Sep 17 00:00:00 2001
From: hyperfekt <adni.online@gmail.com>
Date: Sat, 3 Nov 2018 02:07:36 +0000
Subject: [PATCH 0557/1129] nixos/bcachefs: enable encrypted root

Enables automatic decryption for bcachefs-formatted filesystems needed during boot.
---
 nixos/modules/tasks/filesystems/bcachefs.nix | 60 +++++++++++++++++---
 1 file changed, 52 insertions(+), 8 deletions(-)

diff --git a/nixos/modules/tasks/filesystems/bcachefs.nix b/nixos/modules/tasks/filesystems/bcachefs.nix
index dfb8106d9a5e..5fda24adb978 100644
--- a/nixos/modules/tasks/filesystems/bcachefs.nix
+++ b/nixos/modules/tasks/filesystems/bcachefs.nix
@@ -1,21 +1,65 @@
-{ config, lib, pkgs, ... }:
+{ config, lib, pkgs, utils, ... }:
 
 with lib;
 
 let
 
-  inInitrd = any (fs: fs == "bcachefs") config.boot.initrd.supportedFilesystems;
+  bootFs = filterAttrs (n: fs: (fs.fsType == "bcachefs") && (utils.fsNeededForBoot fs)) config.fileSystems;
+
+  commonFunctions = ''
+    prompt() {
+        local name="$1"
+        printf "enter passphrase for $name: "
+    }
+    tryUnlock() {
+        local name="$1"
+        local path="$2"
+        if bcachefs unlock -c $path > /dev/null 2> /dev/null; then    # test for encryption
+            prompt $name
+            until bcachefs unlock $path 2> /dev/null; do              # repeat until sucessfully unlocked
+                printf "unlocking failed!\n"
+                prompt $name
+            done
+            printf "unlocking successful.\n"
+        fi
+    }
+  '';
+
+  openCommand = name: fs:
+    let
+      # we need only unlock one device manually, and cannot pass multiple at once
+      # remove this adaptation when bcachefs implements mounting by filesystem uuid
+      # also, implement automatic waiting for the constituent devices when that happens
+      # bcachefs does not support mounting devices with colons in the path, ergo we don't (see #49671)
+      firstDevice = head (splitString ":" fs.device);
+    in
+      ''
+        tryUnlock ${name} ${firstDevice}
+      '';
 
 in
 
 {
-  config = mkIf (any (fs: fs == "bcachefs") config.boot.supportedFilesystems) {
+  config = mkIf (elem "bcachefs" config.boot.supportedFilesystems) (mkMerge [
+    {
+      system.fsPackages = [ pkgs.bcachefs-tools ];
 
-    system.fsPackages = [ pkgs.bcachefs-tools ];
+      # use kernel package with bcachefs support until it's in mainline
+      boot.kernelPackages = pkgs.linuxPackages_testing_bcachefs;
+    }
 
-    # use kernel package with bcachefs support until it's in mainline
-    boot.kernelPackages = pkgs.linuxPackages_testing_bcachefs;
-    boot.initrd.availableKernelModules = mkIf inInitrd [ "bcachefs" ];
+    (mkIf ((elem "bcachefs" config.boot.initrd.supportedFilesystems) || (bootFs != {})) {
+      # the cryptographic modules are required only for decryption attempts
+      boot.initrd.availableKernelModules = [ "bcachefs" "chacha20" "poly1305" ];
 
-  };
+      boot.initrd.extraUtilsCommands = ''
+        copy_bin_and_libs ${pkgs.bcachefs-tools}/bin/bcachefs
+      '';
+      boot.initrd.extraUtilsCommandsTest = ''
+        $out/bin/bcachefs version
+      '';
+
+      boot.initrd.postDeviceCommands = commonFunctions + concatStrings (mapAttrsToList openCommand bootFs);
+    })
+  ]);
 }

From 2718feae6f4dfe555f049bf9d4aa08020a972108 Mon Sep 17 00:00:00 2001
From: Andres Romero <andres.r@canva.com>
Date: Tue, 6 Nov 2018 09:14:09 +0000
Subject: [PATCH 0558/1129] nodePackages.ttf2eot: init at 2.0.0

fixes #49575
---
 .../node-packages/node-packages-v10.nix       |  12 +-
 .../node-packages/node-packages-v6.nix        |  12 +-
 .../node-packages/node-packages-v8.json       |   1 +
 .../node-packages/node-packages-v8.nix        | 259 ++++++++++--------
 4 files changed, 163 insertions(+), 121 deletions(-)

diff --git a/pkgs/development/node-packages/node-packages-v10.nix b/pkgs/development/node-packages/node-packages-v10.nix
index b59c06aa87eb..d029fc74d696 100644
--- a/pkgs/development/node-packages/node-packages-v10.nix
+++ b/pkgs/development/node-packages/node-packages-v10.nix
@@ -1881,17 +1881,17 @@ let
       packageName = "tar";
       version = "2.2.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/tar/-/tar-2.2.1.tgz";
+        url = "http://registry.npmjs.org/tar/-/tar-2.2.1.tgz";
         sha1 = "8e4d2a256c0e2185c6b18ad694aec968b83cb1d1";
       };
     };
-    "tar-4.4.6" = {
+    "tar-4.4.7" = {
       name = "tar";
       packageName = "tar";
-      version = "4.4.6";
+      version = "4.4.7";
       src = fetchurl {
-        url = "https://registry.npmjs.org/tar/-/tar-4.4.6.tgz";
-        sha512 = "tMkTnh9EdzxyfW+6GK6fCahagXsnYk6kE6S9Gr9pjVdys769+laCTbodXDhPAjzVtEBazRgP0gYqOjnk9dQzLg==";
+        url = "https://registry.npmjs.org/tar/-/tar-4.4.7.tgz";
+        sha512 = "mR3MzsCdN0IEWjZRuF/J9gaWHnTwOvzjqPTcvi1xXgfKTDQRp39gRETPQEfPByAdEOGmZfx1HrRsn8estaEvtA==";
       };
     };
     "to-object-path-0.3.0" = {
@@ -2575,7 +2575,7 @@ in
       sources."string_decoder-1.1.1"
       sources."strip-ansi-3.0.1"
       sources."strip-json-comments-2.0.1"
-      sources."tar-4.4.6"
+      sources."tar-4.4.7"
       sources."util-deprecate-1.0.2"
       sources."wide-align-1.1.3"
       sources."wrappy-1.0.2"
diff --git a/pkgs/development/node-packages/node-packages-v6.nix b/pkgs/development/node-packages/node-packages-v6.nix
index 5b9e7a8ef63f..bdf4997c1743 100644
--- a/pkgs/development/node-packages/node-packages-v6.nix
+++ b/pkgs/development/node-packages/node-packages-v6.nix
@@ -1881,17 +1881,17 @@ let
       packageName = "tar";
       version = "2.2.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/tar/-/tar-2.2.1.tgz";
+        url = "http://registry.npmjs.org/tar/-/tar-2.2.1.tgz";
         sha1 = "8e4d2a256c0e2185c6b18ad694aec968b83cb1d1";
       };
     };
-    "tar-4.4.6" = {
+    "tar-4.4.7" = {
       name = "tar";
       packageName = "tar";
-      version = "4.4.6";
+      version = "4.4.7";
       src = fetchurl {
-        url = "https://registry.npmjs.org/tar/-/tar-4.4.6.tgz";
-        sha512 = "tMkTnh9EdzxyfW+6GK6fCahagXsnYk6kE6S9Gr9pjVdys769+laCTbodXDhPAjzVtEBazRgP0gYqOjnk9dQzLg==";
+        url = "https://registry.npmjs.org/tar/-/tar-4.4.7.tgz";
+        sha512 = "mR3MzsCdN0IEWjZRuF/J9gaWHnTwOvzjqPTcvi1xXgfKTDQRp39gRETPQEfPByAdEOGmZfx1HrRsn8estaEvtA==";
       };
     };
     "to-object-path-0.3.0" = {
@@ -2575,7 +2575,7 @@ in
       sources."string_decoder-1.1.1"
       sources."strip-ansi-3.0.1"
       sources."strip-json-comments-2.0.1"
-      sources."tar-4.4.6"
+      sources."tar-4.4.7"
       sources."util-deprecate-1.0.2"
       sources."wide-align-1.1.3"
       sources."wrappy-1.0.2"
diff --git a/pkgs/development/node-packages/node-packages-v8.json b/pkgs/development/node-packages/node-packages-v8.json
index 960859daa368..5e89c8e3e35b 100644
--- a/pkgs/development/node-packages/node-packages-v8.json
+++ b/pkgs/development/node-packages/node-packages-v8.json
@@ -120,6 +120,7 @@
 , "tiddlywiki"
 , "titanium"
 , "triton"
+, "ttf2eot"
 , "typescript"
 , "typings"
 , "uglify-js"
diff --git a/pkgs/development/node-packages/node-packages-v8.nix b/pkgs/development/node-packages/node-packages-v8.nix
index 91627d3b5251..443c011c95d8 100644
--- a/pkgs/development/node-packages/node-packages-v8.nix
+++ b/pkgs/development/node-packages/node-packages-v8.nix
@@ -967,13 +967,13 @@ let
         sha512 = "WiZhq3SVJHFRgRYLXvpf65XnV6ipVHhnNaNvE8yCimejrGglkg38kEj0JcizqwSHxmPSjcTlig/6JouxLGEhGw==";
       };
     };
-    "@types/babylon-6.16.3" = {
+    "@types/babylon-6.16.4" = {
       name = "_at_types_slash_babylon";
       packageName = "@types/babylon";
-      version = "6.16.3";
+      version = "6.16.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@types/babylon/-/babylon-6.16.3.tgz";
-        sha512 = "lyJ8sW1PbY3uwuvpOBZ9zMYKshMnQpXmeDHh8dj9j2nJm/xrW0FgB5gLSYOArj5X0IfaXnmhFoJnhS4KbqIMug==";
+        url = "https://registry.npmjs.org/@types/babylon/-/babylon-6.16.4.tgz";
+        sha512 = "8dZMcGPno3g7pJ/d0AyJERo+lXh9i1JhDuCUs+4lNIN9eUe5Yh6UCLrpgSEi05Ve2JMLauL2aozdvKwNL0px1Q==";
       };
     };
     "@types/body-parser-1.17.0" = {
@@ -1606,13 +1606,13 @@ let
         sha512 = "T/zvzYRfbVojPWahDsE5evJdHb3oJoQfFbsrKM7w5Zcs++Tr257tia3BmMP8XYVjp1S9RZXQMh7gao96BlqZOw==";
       };
     };
-    "acorn-6.0.3" = {
+    "acorn-6.0.4" = {
       name = "acorn";
       packageName = "acorn";
-      version = "6.0.3";
+      version = "6.0.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/acorn/-/acorn-6.0.3.tgz";
-        sha512 = "xEnlTS2J0PKuub0pd2Y4W58iEo1sfRZ3h23E8AKmlnV8Nc6E/syRdVeo0DMuLSrgRJZHnFeDou2llXfB+wb1/A==";
+        url = "https://registry.npmjs.org/acorn/-/acorn-6.0.4.tgz";
+        sha512 = "VY4i5EKSKkofY2I+6QLTbTTN/UvEQPCo6eiwzzSaSWfpaDhOmStMCMod6wmuPciNq+XS0faCglFu2lHZpdHUtg==";
       };
     };
     "acorn-dynamic-import-3.0.0" = {
@@ -2079,7 +2079,7 @@ let
       packageName = "ansi-escapes";
       version = "1.4.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/ansi-escapes/-/ansi-escapes-1.4.0.tgz";
+        url = "http://registry.npmjs.org/ansi-escapes/-/ansi-escapes-1.4.0.tgz";
         sha1 = "d3a8a83b319aa67793662b13e761c7911422306e";
       };
     };
@@ -2088,7 +2088,7 @@ let
       packageName = "ansi-escapes";
       version = "3.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/ansi-escapes/-/ansi-escapes-3.1.0.tgz";
+        url = "http://registry.npmjs.org/ansi-escapes/-/ansi-escapes-3.1.0.tgz";
         sha512 = "UgAb8H9D41AQnu/PbWlCofQVcnV4Gs2bBJi9eZPxfU/hgglFh3SMDMENRIqdr7H6XFnXdoknctFByVsCOotTVw==";
       };
     };
@@ -3334,13 +3334,13 @@ let
         sha1 = "00f35b2d27ac91b1f0d3ef2084c98cf1d1f0adc3";
       };
     };
-    "aws-sdk-2.348.0" = {
+    "aws-sdk-2.349.0" = {
       name = "aws-sdk";
       packageName = "aws-sdk";
-      version = "2.348.0";
+      version = "2.349.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.348.0.tgz";
-        sha512 = "TfguapuOAwk7EG8zhYJPjkCaF4tyGjfgcXLkYbWbuS4O6E8pn0x2K5Yt1KXwLiWxG0fzKCLiiaNA5H7bKAP4YQ==";
+        url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.349.0.tgz";
+        sha512 = "yGYCvXOKpvLfbhh1Vo+/2q+Z5bRdPlFpXX3kHBGz4haI6ZoLfFGuztap4en83zim/wpG1ZrhVJjd9u+i9l1ZEA==";
       };
     };
     "aws-sign-0.2.1" = {
@@ -5485,13 +5485,13 @@ let
         sha512 = "Dph0MzuH+rTQzGPNT9fAnrPmMmjKfST6trxJeK7NQuHRaVw24VzPRWTmg9MpcwOVQZO0E1FBICUlFeNaKPIfHA==";
       };
     };
-    "cacache-11.3.0" = {
+    "cacache-11.3.1" = {
       name = "cacache";
       packageName = "cacache";
-      version = "11.3.0";
+      version = "11.3.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/cacache/-/cacache-11.3.0.tgz";
-        sha512 = "6Af/h56f+GXGAuxfutTZGxOofff+PfaZ3K0XlXjMAzS8HHijzNYySP8zHrJ0vniSzd4wrMgwOHegWh695pHSRA==";
+        url = "https://registry.npmjs.org/cacache/-/cacache-11.3.1.tgz";
+        sha512 = "2PEw4cRRDu+iQvBTTuttQifacYjLPhET+SYO/gEFMy8uhi+jlJREDAjSF5FWSdV/Aw5h18caHA7vMTw2c+wDzA==";
       };
     };
     "cache-base-1.0.1" = {
@@ -8249,13 +8249,13 @@ let
         sha1 = "3bdfecdc608147c1c67202fa291e7dca59eaa3b8";
       };
     };
-    "cryptiles-3.1.3" = {
+    "cryptiles-3.1.4" = {
       name = "cryptiles";
       packageName = "cryptiles";
-      version = "3.1.3";
+      version = "3.1.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/cryptiles/-/cryptiles-3.1.3.tgz";
-        sha512 = "8dAQYBGMc/c0oOfLED0/t7XJ3DOiGqxwBT9qsj4KrW7e3ICflVCUpXZj8GbjEW38eYueJfGWlMq6dEX6cnWoyg==";
+        url = "https://registry.npmjs.org/cryptiles/-/cryptiles-3.1.4.tgz";
+        sha512 = "8I1sgZHfVwcSOY6mSGpVU3lw/GSIZvusg8dD2+OGehCJpOhQRLNcH0qb9upQnOH4XhgxxFJSg6E2kx95deb1Tw==";
       };
     };
     "crypto-0.0.3" = {
@@ -16126,13 +16126,13 @@ let
         sha512 = "pyfU/0kHdISIgslFfZN9nfY1Gk3MquQgUm1mJTjdkEPpkAKNWuBTSqFwewOpR7N351VkErCiyV71zX7mlQQqsg==";
       };
     };
-    "is-arguments-1.0.3" = {
+    "is-arguments-1.0.4" = {
       name = "is-arguments";
       packageName = "is-arguments";
-      version = "1.0.3";
+      version = "1.0.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/is-arguments/-/is-arguments-1.0.3.tgz";
-        sha512 = "k6M8JiBbDIzI/ewhfcfQgaR3+H+W9PkEqgFPW6P1dNZDOWrma1DbrBJk5Wm2eTrrzTFHJeviMRvuelM6TBbBEw==";
+        url = "https://registry.npmjs.org/is-arguments/-/is-arguments-1.0.4.tgz";
+        sha512 = "xPh0Rmt8NE65sNzvyUmWgI1tz3mKq74lGA0mL8LYZcoIzKOzDh6HmrYm3d18k60nHerC8A9Km8kYu87zfSFnLA==";
       };
     };
     "is-arrayish-0.2.1" = {
@@ -20897,6 +20897,15 @@ let
         sha1 = "5529a4d67654134edcc5266656835b0f851afcee";
       };
     };
+    "microbuffer-1.0.0" = {
+      name = "microbuffer";
+      packageName = "microbuffer";
+      version = "1.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/microbuffer/-/microbuffer-1.0.0.tgz";
+        sha1 = "8b3832ed40c87d51f47bb234913a698a756d19d2";
+      };
+    };
     "microee-0.0.6" = {
       name = "microee";
       packageName = "microee";
@@ -22585,13 +22594,13 @@ let
         sha1 = "ab884e8e7e57e38a944753cec706f788d1768bb5";
       };
     };
-    "node-fetch-2.2.0" = {
+    "node-fetch-2.2.1" = {
       name = "node-fetch";
       packageName = "node-fetch";
-      version = "2.2.0";
+      version = "2.2.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/node-fetch/-/node-fetch-2.2.0.tgz";
-        sha512 = "OayFWziIxiHY8bCUyLX6sTpDH8Jsbp4FfYd1j1f7vZyfgkcOnAyM4oQR16f8a0s7Gl/viMGRey8eScYk4V4EZA==";
+        url = "https://registry.npmjs.org/node-fetch/-/node-fetch-2.2.1.tgz";
+        sha512 = "ObXBpNCD3A/vYQiQtEWl7DuqjAXjfptYFuGHLdPl5U19/6kJuZV+8uMHLrkj3wJrJoyfg4nhgyFixZdaZoAiEQ==";
       };
     };
     "node-fetch-npm-2.0.2" = {
@@ -22918,13 +22927,13 @@ let
         sha1 = "586db8101db30cb4438eb546737a41aad0cf13d5";
       };
     };
-    "nodemon-1.18.5" = {
+    "nodemon-1.18.6" = {
       name = "nodemon";
       packageName = "nodemon";
-      version = "1.18.5";
+      version = "1.18.6";
       src = fetchurl {
-        url = "https://registry.npmjs.org/nodemon/-/nodemon-1.18.5.tgz";
-        sha512 = "8806dC8dfBlbxQmqNOSEeay/qlbddKvFzxIGNxnPtxUlTtH77xsrC66RnA3M47HCSgMgE5bj+U586o50RowXBg==";
+        url = "https://registry.npmjs.org/nodemon/-/nodemon-1.18.6.tgz";
+        sha512 = "4pHQNYEZun+IkIC2jCaXEhkZnfA7rQe73i8RkdRyDJls/K+WxR7IpI5uNUsAvQ0zWvYcCDNGD+XVtw2ZG86/uQ==";
       };
     };
     "nodesecurity-npm-utils-6.0.0" = {
@@ -28464,13 +28473,13 @@ let
         sha512 = "fz/T/qLkJM6RTtbqGqA1+uZ88ejqJoPyKeJAeXPYjebA7HzV/UyflH4gXWqW/Y6SERnp4kDwNARjqy6se3PcOw==";
       };
     };
-    "rss-parser-3.5.2" = {
+    "rss-parser-3.5.3" = {
       name = "rss-parser";
       packageName = "rss-parser";
-      version = "3.5.2";
+      version = "3.5.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/rss-parser/-/rss-parser-3.5.2.tgz";
-        sha512 = "tpD+psqq1v6yqH0aLZtmnK0yp5PmewYrHlAonrUIEepEJSqUq553raC3sY6Tw/3DxsnZg8fsa/nSU5VwBZYsyg==";
+        url = "https://registry.npmjs.org/rss-parser/-/rss-parser-3.5.3.tgz";
+        sha512 = "oByqqKTuB6tCg/4UTPXUpJmG4Wr+H72qsBcSnBZM9nH1NhjV8lXzx8uKibN9Sq+mZwwZQyOitjoQvZ/ePsttKA==";
       };
     };
     "rsvp-3.6.2" = {
@@ -29499,13 +29508,13 @@ let
         sha512 = "Wvre/Jq5vgoz31Z9stYWPLn0PqRqmBDpFSdypAnHu5AvRVCYPRYGnvryNLiXu8GOBNDH82J2FRHUGMjjHUpXFw==";
       };
     };
-    "simple-git-1.106.0" = {
+    "simple-git-1.107.0" = {
       name = "simple-git";
       packageName = "simple-git";
-      version = "1.106.0";
+      version = "1.107.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/simple-git/-/simple-git-1.106.0.tgz";
-        sha512 = "LaxKq4X9Om7bb16Cpinc36hT1YLHMM9KDQMSWJVv4Y1TGDEUuZbs+0lAk2JSKkCEO3xFjcMSx5OjvZo+i4eJvQ==";
+        url = "https://registry.npmjs.org/simple-git/-/simple-git-1.107.0.tgz";
+        sha512 = "t4OK1JRlp4ayKRfcW6owrWcRVLyHRUlhGd0uN6ZZTqfDq8a5XpcUdOKiGRNobHEuMtNqzp0vcJNvhYWwh5PsQA==";
       };
     };
     "simple-lru-cache-0.0.2" = {
@@ -29877,13 +29886,13 @@ let
         sha512 = "FL1b58BDrqS3A11lJ0zEdnJ3UOKqVxawAkF3k7F0CVN7VQ34aZrV+G8BZ1WC9ZL7NyrwsW0oviwsWDgRuVYtJg==";
       };
     };
-    "snyk-1.106.1" = {
+    "snyk-1.108.0" = {
       name = "snyk";
       packageName = "snyk";
-      version = "1.106.1";
+      version = "1.108.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/snyk/-/snyk-1.106.1.tgz";
-        sha512 = "WMHCAoRfXsHRXdMxImvabsZ35ycRYvvIeJyftfKUpP1y4Dq0nu2Evn4SL1z8ZX0q2TpCiQmU7PE4+WhoZr3KnQ==";
+        url = "https://registry.npmjs.org/snyk/-/snyk-1.108.0.tgz";
+        sha512 = "QKeERkklW4DFyd49sqbwZ4xNYXtHOPCcUjNUzDfcvXzNwyxfRKhTf43nmPw6lnIcgBesrY95hMozos4WmgYl3w==";
       };
     };
     "snyk-config-2.2.0" = {
@@ -29922,13 +29931,13 @@ let
         sha512 = "9gYJluomFZ5kaww5FoBvp4zUIsr27pEJ12jQJaVf0FJ0BmyYHmbCoxvHdqjCSYS2fVtF+fmPnvw0XKQOIwA1SA==";
       };
     };
-    "snyk-module-1.8.2" = {
+    "snyk-module-1.9.1" = {
       name = "snyk-module";
       packageName = "snyk-module";
-      version = "1.8.2";
+      version = "1.9.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/snyk-module/-/snyk-module-1.8.2.tgz";
-        sha512 = "XqhdbZ/CUuJ5gSaYdYfapLqx9qm2Mp6nyRMBCLXe9tJSiohOJsc9fQuUDbdOiRCqpA4BD6WLl+qlwOJmJoszBg==";
+        url = "https://registry.npmjs.org/snyk-module/-/snyk-module-1.9.1.tgz";
+        sha512 = "A+CCyBSa4IKok5uEhqT+hV/35RO6APFNLqk9DRRHg7xW2/j//nPX8wTSZUPF8QeRNEk/sX+6df7M1y6PBHGSHA==";
       };
     };
     "snyk-mvn-plugin-2.0.0" = {
@@ -29940,13 +29949,13 @@ let
         sha512 = "9jAhZhv+7YcqtoQYCYlgMoxK+dWBKlk+wkX27Ebg3vNddNop9q5jZitRXTjsXwfSUZHRt+Ptw1f8vei9kjzZVg==";
       };
     };
-    "snyk-nodejs-lockfile-parser-1.5.3" = {
+    "snyk-nodejs-lockfile-parser-1.7.0" = {
       name = "snyk-nodejs-lockfile-parser";
       packageName = "snyk-nodejs-lockfile-parser";
-      version = "1.5.3";
+      version = "1.7.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/snyk-nodejs-lockfile-parser/-/snyk-nodejs-lockfile-parser-1.5.3.tgz";
-        sha512 = "hVUUxRm7f8mN3RdTbeZGJn+w4VMKb7ke4/OB8Qhr4O5S04AMb4YOcsZ80niur05VUykPT32IyFwyGRTBi99WUw==";
+        url = "https://registry.npmjs.org/snyk-nodejs-lockfile-parser/-/snyk-nodejs-lockfile-parser-1.7.0.tgz";
+        sha512 = "57Gnw8o3HQbheb808GRsofnYPaJCbpt7n+zec+C7J/GZE6GJk+WA2u1EPsNQAsfTLQ3rxBwA1Sonhg498T4COA==";
       };
     };
     "snyk-nuget-plugin-1.6.5" = {
@@ -29967,13 +29976,13 @@ let
         sha512 = "g5QSHBsRJ2O4cNxKC4zlWwnQYiSgQ77Y6QgGmo3ihPX3VLZrc1amaZIpPsNe1jwXirnGj2rvR5Xw+jDjbzvHFw==";
       };
     };
-    "snyk-policy-1.12.0" = {
+    "snyk-policy-1.13.1" = {
       name = "snyk-policy";
       packageName = "snyk-policy";
-      version = "1.12.0";
+      version = "1.13.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/snyk-policy/-/snyk-policy-1.12.0.tgz";
-        sha512 = "CEioNnDzccHyid7UIVl3bJ1dnG4co4ofI+KxuC1mo0IUXy64gxnBTeVoZF5gVLWbAyxGxSeW8f0+8GmWMHVb7w==";
+        url = "https://registry.npmjs.org/snyk-policy/-/snyk-policy-1.13.1.tgz";
+        sha512 = "l9evS3Yk70xyvajjg+I6Ij7fr7gxpVRMZl0J1xNpWps/IVu4DSGih3aMmXi47VJozr4A/eFyj7R1lIr2GhqJCA==";
       };
     };
     "snyk-python-plugin-1.9.0" = {
@@ -30876,13 +30885,13 @@ let
         sha512 = "l4mvU4PwXYTWJFhps4g9RkvPAEqJ5klR3oFBEaUqXTHfDzEq2pAn11Np2JqH0CM9JnW/AbK9H+Uzw4aofA9D8A==";
       };
     };
-    "ssb-validate-4.0.0" = {
+    "ssb-validate-4.0.3" = {
       name = "ssb-validate";
       packageName = "ssb-validate";
-      version = "4.0.0";
+      version = "4.0.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/ssb-validate/-/ssb-validate-4.0.0.tgz";
-        sha512 = "7pnbwM7zEdkVhw0gPZ70r0kipldRWa1G/Dvsaq1g91OvrRqjM6FLbNZ9yUwrkQEgfZB/1S+H743/VUzUfnXq2g==";
+        url = "https://registry.npmjs.org/ssb-validate/-/ssb-validate-4.0.3.tgz";
+        sha512 = "ee0HgdtRef+dL98sbcEVB7+gnr8u5TqJcQqRdISWyfKcLKv1GXsmXb7VSYVRGveIkbnxHvOWps+XEJzmqqgxHQ==";
       };
     };
     "ssb-ws-3.0.2" = {
@@ -32133,7 +32142,7 @@ let
       packageName = "tar";
       version = "0.1.17";
       src = fetchurl {
-        url = "https://registry.npmjs.org/tar/-/tar-0.1.17.tgz";
+        url = "http://registry.npmjs.org/tar/-/tar-0.1.17.tgz";
         sha1 = "408c8a95deb8e78a65b59b1a51a333183a32badc";
       };
     };
@@ -32142,7 +32151,7 @@ let
       packageName = "tar";
       version = "2.2.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/tar/-/tar-2.2.1.tgz";
+        url = "http://registry.npmjs.org/tar/-/tar-2.2.1.tgz";
         sha1 = "8e4d2a256c0e2185c6b18ad694aec968b83cb1d1";
       };
     };
@@ -32155,13 +32164,13 @@ let
         sha512 = "pQNFsg+Wb6VXsrIPUnuQwrHR4wD5ASBR0jRyiT4/AALFA2Nl+CjhkDX5fTmIwCuULRtyQR3Dae2BBnP2EFHscw==";
       };
     };
-    "tar-4.4.6" = {
+    "tar-4.4.7" = {
       name = "tar";
       packageName = "tar";
-      version = "4.4.6";
+      version = "4.4.7";
       src = fetchurl {
-        url = "https://registry.npmjs.org/tar/-/tar-4.4.6.tgz";
-        sha512 = "tMkTnh9EdzxyfW+6GK6fCahagXsnYk6kE6S9Gr9pjVdys769+laCTbodXDhPAjzVtEBazRgP0gYqOjnk9dQzLg==";
+        url = "https://registry.npmjs.org/tar/-/tar-4.4.7.tgz";
+        sha512 = "mR3MzsCdN0IEWjZRuF/J9gaWHnTwOvzjqPTcvi1xXgfKTDQRp39gRETPQEfPByAdEOGmZfx1HrRsn8estaEvtA==";
       };
     };
     "tar-fs-1.16.3" = {
@@ -32983,6 +32992,15 @@ let
         sha512 = "DlX6dR0lOIRDFxI0mjL9IYg6OTncLm/Zt+JiBhE5OlFcAR8yc9S7FFXU9so0oda47frdM/JFsk7UjNt9vscKcg==";
       };
     };
+    "tree-kill-1.2.1" = {
+      name = "tree-kill";
+      packageName = "tree-kill";
+      version = "1.2.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/tree-kill/-/tree-kill-1.2.1.tgz";
+        sha512 = "4hjqbObwlh2dLyW4tcz0Ymw0ggoaVDMveUB9w8kFSQScdRLo0gxO9J7WFcUBo+W3C1TLdFIEwNOWebgZZ0RH9Q==";
+      };
+    };
     "trim-0.0.1" = {
       name = "trim";
       packageName = "trim";
@@ -37183,7 +37201,7 @@ in
     };
     dependencies = [
       sources."JSONStream-1.3.5"
-      sources."acorn-6.0.3"
+      sources."acorn-6.0.4"
       sources."acorn-dynamic-import-4.0.0"
       sources."acorn-node-1.6.2"
       sources."acorn-walk-6.1.0"
@@ -37890,7 +37908,7 @@ in
       sources."acorn-dynamic-import-4.0.0"
       (sources."acorn-node-1.6.2" // {
         dependencies = [
-          sources."acorn-6.0.3"
+          sources."acorn-6.0.4"
         ];
       })
       sources."acorn-walk-6.1.0"
@@ -39512,7 +39530,7 @@ in
       sources."assert-plus-1.0.0"
       sources."async-2.6.1"
       sources."asynckit-0.4.0"
-      sources."aws-sdk-2.348.0"
+      sources."aws-sdk-2.349.0"
       sources."aws-sign2-0.7.0"
       sources."aws4-1.8.0"
       sources."base64-js-1.3.0"
@@ -40227,7 +40245,7 @@ in
     dependencies = [
       sources."@babel/code-frame-7.0.0"
       sources."@babel/highlight-7.0.0"
-      sources."acorn-6.0.3"
+      sources."acorn-6.0.4"
       sources."acorn-jsx-5.0.0"
       sources."ajv-6.5.5"
       sources."ansi-escapes-3.1.0"
@@ -40370,7 +40388,7 @@ in
     dependencies = [
       sources."@babel/code-frame-7.0.0"
       sources."@babel/highlight-7.0.0"
-      sources."acorn-6.0.3"
+      sources."acorn-6.0.4"
       sources."acorn-jsx-5.0.0"
       sources."ajv-6.5.5"
       sources."ansi-escapes-3.1.0"
@@ -41165,7 +41183,7 @@ in
       sources."microee-0.0.6"
       sources."minilog-3.1.0"
       sources."ms-2.1.1"
-      sources."simple-git-1.106.0"
+      sources."simple-git-1.107.0"
       sources."tabtab-git+https://github.com/mixu/node-tabtab.git"
     ];
     buildInputs = globalBuildInputs;
@@ -41722,7 +41740,7 @@ in
       sources."negotiator-0.6.1"
       sources."nice-try-1.0.5"
       sources."no-case-2.3.2"
-      sources."node-fetch-2.2.0"
+      sources."node-fetch-2.2.1"
       sources."node-request-by-swagger-1.1.4"
       sources."normalize-package-data-2.4.0"
       sources."npm-path-2.0.4"
@@ -43359,21 +43377,21 @@ in
       sources."shelljs-0.3.0"
       sources."signal-exit-3.0.2"
       sources."smart-buffer-1.1.15"
-      sources."snyk-1.106.1"
+      sources."snyk-1.108.0"
       sources."snyk-config-2.2.0"
       sources."snyk-docker-plugin-1.12.1"
       sources."snyk-go-plugin-1.6.0"
       sources."snyk-gradle-plugin-2.1.0"
-      sources."snyk-module-1.8.2"
+      sources."snyk-module-1.9.1"
       sources."snyk-mvn-plugin-2.0.0"
-      (sources."snyk-nodejs-lockfile-parser-1.5.3" // {
+      (sources."snyk-nodejs-lockfile-parser-1.7.0" // {
         dependencies = [
           sources."lodash-4.17.10"
         ];
       })
       sources."snyk-nuget-plugin-1.6.5"
       sources."snyk-php-plugin-1.5.1"
-      sources."snyk-policy-1.12.0"
+      sources."snyk-policy-1.13.1"
       sources."snyk-python-plugin-1.9.0"
       sources."snyk-resolve-1.0.1"
       sources."snyk-resolve-deps-4.0.2"
@@ -43819,7 +43837,7 @@ in
         ];
       })
       sources."supports-color-5.5.0"
-      (sources."tar-4.4.6" // {
+      (sources."tar-4.4.7" // {
         dependencies = [
           sources."yallist-3.0.2"
         ];
@@ -45673,7 +45691,7 @@ in
       sources."concat-map-0.0.1"
       sources."core-util-is-1.0.2"
       sources."cross-spawn-5.1.0"
-      (sources."cryptiles-3.1.3" // {
+      (sources."cryptiles-3.1.4" // {
         dependencies = [
           sources."boom-5.2.0"
         ];
@@ -45994,7 +46012,7 @@ in
       sources."builtins-1.0.3"
       sources."byline-5.0.0"
       sources."byte-size-4.0.4"
-      sources."cacache-11.3.0"
+      sources."cacache-11.3.1"
       sources."cache-base-1.0.1"
       sources."call-me-maybe-1.0.1"
       sources."camelcase-4.1.0"
@@ -46583,7 +46601,7 @@ in
       sources."strip-indent-2.0.0"
       sources."strong-log-transformer-2.0.0"
       sources."supports-color-5.5.0"
-      (sources."tar-4.4.6" // {
+      (sources."tar-4.4.7" // {
         dependencies = [
           sources."yallist-3.0.2"
         ];
@@ -49222,7 +49240,7 @@ in
       sources."string_decoder-1.1.1"
       sources."strip-ansi-3.0.1"
       sources."strip-json-comments-2.0.1"
-      sources."tar-4.4.6"
+      sources."tar-4.4.7"
       sources."util-deprecate-1.0.2"
       sources."wide-align-1.1.3"
       sources."wrappy-1.0.2"
@@ -49240,10 +49258,10 @@ in
   nodemon = nodeEnv.buildNodePackage {
     name = "nodemon";
     packageName = "nodemon";
-    version = "1.18.5";
+    version = "1.18.6";
     src = fetchurl {
-      url = "https://registry.npmjs.org/nodemon/-/nodemon-1.18.5.tgz";
-      sha512 = "8806dC8dfBlbxQmqNOSEeay/qlbddKvFzxIGNxnPtxUlTtH77xsrC66RnA3M47HCSgMgE5bj+U586o50RowXBg==";
+      url = "https://registry.npmjs.org/nodemon/-/nodemon-1.18.6.tgz";
+      sha512 = "4pHQNYEZun+IkIC2jCaXEhkZnfA7rQe73i8RkdRyDJls/K+WxR7IpI5uNUsAvQ0zWvYcCDNGD+XVtw2ZG86/uQ==";
     };
     dependencies = [
       sources."abbrev-1.1.1"
@@ -50798,7 +50816,7 @@ in
       sources."inherits-2.0.3"
       sources."invert-kv-1.0.0"
       sources."ipaddr.js-1.8.0"
-      sources."is-arguments-1.0.3"
+      sources."is-arguments-1.0.4"
       sources."is-arrayish-0.2.1"
       sources."is-builtin-module-1.0.0"
       sources."is-fullwidth-code-point-1.0.0"
@@ -51885,7 +51903,7 @@ in
     };
     dependencies = [
       sources."JSONStream-1.3.5"
-      sources."acorn-6.0.3"
+      sources."acorn-6.0.4"
       sources."acorn-dynamic-import-4.0.0"
       sources."acorn-node-1.6.2"
       sources."acorn-walk-6.1.0"
@@ -52294,7 +52312,7 @@ in
       })
       sources."to-regex-3.0.2"
       sources."to-regex-range-2.1.1"
-      sources."tree-kill-1.2.0"
+      sources."tree-kill-1.2.1"
       sources."tty-browserify-0.0.1"
       sources."typedarray-0.0.6"
       sources."umd-3.0.3"
@@ -52352,7 +52370,7 @@ in
     };
     dependencies = [
       sources."@types/babel-types-7.0.4"
-      sources."@types/babylon-6.16.3"
+      sources."@types/babylon-6.16.4"
       sources."accepts-1.3.5"
       sources."acorn-3.3.0"
       (sources."acorn-globals-3.1.0" // {
@@ -53609,7 +53627,7 @@ in
         ];
       })
       sources."ssb-ref-2.13.6"
-      sources."ssb-validate-4.0.0"
+      sources."ssb-validate-4.0.3"
       sources."ssb-ws-3.0.2"
       sources."stack-0.1.0"
       (sources."static-extend-0.1.2" // {
@@ -54690,10 +54708,10 @@ in
   snyk = nodeEnv.buildNodePackage {
     name = "snyk";
     packageName = "snyk";
-    version = "1.106.1";
+    version = "1.108.0";
     src = fetchurl {
-      url = "https://registry.npmjs.org/snyk/-/snyk-1.106.1.tgz";
-      sha512 = "WMHCAoRfXsHRXdMxImvabsZ35ycRYvvIeJyftfKUpP1y4Dq0nu2Evn4SL1z8ZX0q2TpCiQmU7PE4+WhoZr3KnQ==";
+      url = "https://registry.npmjs.org/snyk/-/snyk-1.108.0.tgz";
+      sha512 = "QKeERkklW4DFyd49sqbwZ4xNYXtHOPCcUjNUzDfcvXzNwyxfRKhTf43nmPw6lnIcgBesrY95hMozos4WmgYl3w==";
     };
     dependencies = [
       sources."@yarnpkg/lockfile-1.1.0"
@@ -54896,16 +54914,16 @@ in
       sources."snyk-docker-plugin-1.12.1"
       sources."snyk-go-plugin-1.6.0"
       sources."snyk-gradle-plugin-2.1.0"
-      sources."snyk-module-1.8.2"
+      sources."snyk-module-1.9.1"
       sources."snyk-mvn-plugin-2.0.0"
-      (sources."snyk-nodejs-lockfile-parser-1.5.3" // {
+      (sources."snyk-nodejs-lockfile-parser-1.7.0" // {
         dependencies = [
           sources."lodash-4.17.10"
         ];
       })
       sources."snyk-nuget-plugin-1.6.5"
       sources."snyk-php-plugin-1.5.1"
-      sources."snyk-policy-1.12.0"
+      sources."snyk-policy-1.13.1"
       sources."snyk-python-plugin-1.9.0"
       sources."snyk-resolve-1.0.1"
       sources."snyk-resolve-deps-4.0.2"
@@ -55579,7 +55597,7 @@ in
       sources."nan-2.11.1"
       sources."nanomatch-1.2.13"
       sources."native-promise-only-0.8.1"
-      (sources."nodemon-1.18.5" // {
+      (sources."nodemon-1.18.6" // {
         dependencies = [
           sources."debug-3.2.6"
           sources."ms-2.1.1"
@@ -56242,6 +56260,28 @@ in
     production = true;
     bypassCache = true;
   };
+  ttf2eot = nodeEnv.buildNodePackage {
+    name = "ttf2eot";
+    packageName = "ttf2eot";
+    version = "2.0.0";
+    src = fetchurl {
+      url = "https://registry.npmjs.org/ttf2eot/-/ttf2eot-2.0.0.tgz";
+      sha1 = "8e6337a585abd1608a0c84958ab483ce69f6654b";
+    };
+    dependencies = [
+      sources."argparse-1.0.10"
+      sources."microbuffer-1.0.0"
+      sources."sprintf-js-1.0.3"
+    ];
+    buildInputs = globalBuildInputs;
+    meta = {
+      description = "Convert TTF font to EOT";
+      homepage = "https://github.com/fontello/ttf2eot#readme";
+      license = "MIT";
+    };
+    production = true;
+    bypassCache = true;
+  };
   typescript = nodeEnv.buildNodePackage {
     name = "typescript";
     packageName = "typescript";
@@ -57758,10 +57798,10 @@ in
       })
       sources."negotiator-0.6.1"
       sources."nice-try-1.0.5"
-      sources."node-fetch-2.2.0"
+      sources."node-fetch-2.2.1"
       sources."node-ipc-9.1.1"
       sources."node-notifier-5.3.0"
-      sources."nodemon-1.18.5"
+      sources."nodemon-1.18.6"
       sources."nopt-1.0.10"
       sources."normalize-path-2.1.1"
       sources."npm-conf-1.1.3"
@@ -57871,7 +57911,7 @@ in
       sources."ret-0.1.15"
       sources."retry-0.12.0"
       sources."rimraf-2.6.2"
-      sources."rss-parser-3.5.2"
+      sources."rss-parser-3.5.3"
       sources."run-async-2.3.0"
       sources."rxjs-6.3.3"
       sources."safe-buffer-5.1.2"
@@ -58462,10 +58502,10 @@ in
   webpack = nodeEnv.buildNodePackage {
     name = "webpack";
     packageName = "webpack";
-    version = "4.24.0";
+    version = "4.25.1";
     src = fetchurl {
-      url = "https://registry.npmjs.org/webpack/-/webpack-4.24.0.tgz";
-      sha512 = "Xur0l8nBETnW+DjpFqSGME1jNXxEPVETl30k1lWAsbnukVJdq330/i3PDOLPUtVl/E/cciiOp5uW098hFfQLQA==";
+      url = "https://registry.npmjs.org/webpack/-/webpack-4.25.1.tgz";
+      sha512 = "T0GU/3NRtO4tMfNzsvpdhUr8HnzA4LTdP2zd+e5zd6CdOH5vNKHnAlO+DvzccfhPdzqRrALOFcjYxx7K5DWmvA==";
     };
     dependencies = [
       sources."@webassemblyjs/ast-1.7.11"
@@ -60193,7 +60233,7 @@ in
         ];
       })
       sources."snapdragon-util-3.0.1"
-      (sources."snyk-1.106.1" // {
+      (sources."snyk-1.108.0" // {
         dependencies = [
           sources."ansi-regex-3.0.0"
           sources."ansi-styles-3.2.1"
@@ -60222,14 +60262,14 @@ in
       })
       sources."snyk-go-plugin-1.6.0"
       sources."snyk-gradle-plugin-2.1.0"
-      (sources."snyk-module-1.8.2" // {
+      (sources."snyk-module-1.9.1" // {
         dependencies = [
           sources."debug-3.2.6"
           sources."ms-2.1.1"
         ];
       })
       sources."snyk-mvn-plugin-2.0.0"
-      (sources."snyk-nodejs-lockfile-parser-1.5.3" // {
+      (sources."snyk-nodejs-lockfile-parser-1.7.0" // {
         dependencies = [
           sources."lodash-4.17.10"
           sources."source-map-0.6.1"
@@ -60248,10 +60288,11 @@ in
           sources."ms-2.1.1"
         ];
       })
-      (sources."snyk-policy-1.12.0" // {
+      (sources."snyk-policy-1.13.1" // {
         dependencies = [
           sources."debug-3.2.6"
           sources."ms-2.1.1"
+          sources."semver-5.6.0"
         ];
       })
       sources."snyk-python-plugin-1.9.0"

From 5b2da1ab19f103f45738e4d60533963cca555721 Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Tue, 6 Nov 2018 09:08:35 +0000
Subject: [PATCH 0559/1129] gollum: rack: 1.6.10 -> 1.6.11

CVE-2018-16470: https://seclists.org/oss-sec/2018/q4/128
CVE-2018-16471: https://seclists.org/oss-sec/2018/q4/129
---
 pkgs/applications/misc/gollum/Gemfile.lock | 4 ++--
 pkgs/applications/misc/gollum/gemset.nix   | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/misc/gollum/Gemfile.lock b/pkgs/applications/misc/gollum/Gemfile.lock
index 977bd5e50ddd..e6c66cba1e06 100644
--- a/pkgs/applications/misc/gollum/Gemfile.lock
+++ b/pkgs/applications/misc/gollum/Gemfile.lock
@@ -39,7 +39,7 @@ GEM
     nokogiri (1.8.4)
       mini_portile2 (~> 2.3.0)
     posix-spawn (0.3.13)
-    rack (1.6.10)
+    rack (1.6.11)
     rack-protection (1.5.5)
       rack
     rouge (2.2.1)
@@ -65,4 +65,4 @@ DEPENDENCIES
   gollum
 
 BUNDLED WITH
-   1.16.3
+   1.16.4
diff --git a/pkgs/applications/misc/gollum/gemset.nix b/pkgs/applications/misc/gollum/gemset.nix
index 3413b6ba6310..bb105805ca8e 100644
--- a/pkgs/applications/misc/gollum/gemset.nix
+++ b/pkgs/applications/misc/gollum/gemset.nix
@@ -137,10 +137,10 @@
   rack = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0in0amn0kwvzmi8h5zg6ijrx5wpsf8h96zrfmnk1kwh2ql4sxs2q";
+      sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f";
       type = "gem";
     };
-    version = "1.6.10";
+    version = "1.6.11";
   };
   rack-protection = {
     dependencies = ["rack"];

From 9f750d959e4581b46c3d5f90ae5b34f742bccca1 Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Tue, 6 Nov 2018 09:10:50 +0000
Subject: [PATCH 0560/1129] ledger-web: rack: 1.6.4 -> 1.6.11

CVE-2018-16470: https://seclists.org/oss-sec/2018/q4/128
CVE-2018-16471: https://seclists.org/oss-sec/2018/q4/129
---
 pkgs/applications/office/ledger-web/Gemfile.lock |  6 +++---
 pkgs/applications/office/ledger-web/gemset.nix   | 12 ++++++++++--
 2 files changed, 13 insertions(+), 5 deletions(-)

diff --git a/pkgs/applications/office/ledger-web/Gemfile.lock b/pkgs/applications/office/ledger-web/Gemfile.lock
index 2c94c53ebc99..290adb0e8e3d 100644
--- a/pkgs/applications/office/ledger-web/Gemfile.lock
+++ b/pkgs/applications/office/ledger-web/Gemfile.lock
@@ -17,7 +17,7 @@ GEM
       sinatra-session
     multi_json (1.12.1)
     pg (0.18.4)
-    rack (1.6.4)
+    rack (1.6.11)
     rack-protection (1.5.3)
       rack
     rack-test (0.6.3)
@@ -55,7 +55,7 @@ PLATFORMS
   ruby
 
 DEPENDENCIES
-  ledger_web (= 1.5.2)
+  ledger_web
 
 BUNDLED WITH
-   1.12.5
+   1.16.4
diff --git a/pkgs/applications/office/ledger-web/gemset.nix b/pkgs/applications/office/ledger-web/gemset.nix
index 62e2ad54847d..acd1bed25a08 100644
--- a/pkgs/applications/office/ledger-web/gemset.nix
+++ b/pkgs/applications/office/ledger-web/gemset.nix
@@ -32,6 +32,7 @@
     version = "1.5.1";
   };
   ledger_web = {
+    dependencies = ["database_cleaner" "directory_watcher" "pg" "rack" "rspec" "sequel" "sinatra" "sinatra-contrib" "sinatra-session"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0i4vagaiyayymlr41rsy4lg2cl1r011ib0ql9dgjadfy6imb4kqh";
@@ -58,10 +59,10 @@
   rack = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "09bs295yq6csjnkzj7ncj50i6chfxrhmzg1pk6p0vd2lb9ac8pj5";
+      sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f";
       type = "gem";
     };
-    version = "1.6.4";
+    version = "1.6.11";
   };
   rack-protection = {
     dependencies = ["rack"];
@@ -82,6 +83,7 @@
     version = "0.6.3";
   };
   rspec = {
+    dependencies = ["rspec-core" "rspec-expectations" "rspec-mocks"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "16g3mmih999f0b6vcz2c3qsc7ks5zy4lj1rzjh8hf6wk531nvc6s";
@@ -90,6 +92,7 @@
     version = "3.5.0";
   };
   rspec-core = {
+    dependencies = ["rspec-support"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "12yndf7y6g3s1306bv1aycsmd0gjy5m172spdhx54svca2fcpzy1";
@@ -98,6 +101,7 @@
     version = "3.5.2";
   };
   rspec-expectations = {
+    dependencies = ["diff-lcs" "rspec-support"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0bbqfrb1x8gmwf8x2xhhwvvlhwbbafq4isbvlibxi6jk602f09gs";
@@ -106,6 +110,7 @@
     version = "3.5.0";
   };
   rspec-mocks = {
+    dependencies = ["diff-lcs" "rspec-support"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0nl3ksivh9wwrjjd47z5dggrwx40v6gpb3a0gzbp1gs06a5dmk24";
@@ -130,6 +135,7 @@
     version = "4.37.0";
   };
   sinatra = {
+    dependencies = ["rack" "rack-protection" "tilt"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1b81kbr65mmcl9cdq2r6yc16wklyp798rxkgmm5pr9fvsj7jwmxp";
@@ -138,6 +144,7 @@
     version = "1.4.7";
   };
   sinatra-contrib = {
+    dependencies = ["backports" "multi_json" "rack-protection" "rack-test" "sinatra" "tilt"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0vi3i0icbi2figiayxpvxbqpbn1syma7w4p4zw5mav1ln4c7jnfr";
@@ -146,6 +153,7 @@
     version = "1.4.7";
   };
   sinatra-session = {
+    dependencies = ["sinatra"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "183xl8i4d2hc03afd1i52gwn2xi3vzrv02g22llhfy5wkmm44gmq";

From 3c7bbb5850fef8432af4d1024d5a1630a0cc516f Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Tue, 6 Nov 2018 09:12:05 +0000
Subject: [PATCH 0561/1129] gitlab: rack: 1.6.10 -> 1.6.11

CVE-2018-16470: https://seclists.org/oss-sec/2018/q4/128
CVE-2018-16471: https://seclists.org/oss-sec/2018/q4/129
---
 .../version-management/gitlab/rubyEnv-ce/Gemfile.lock         | 2 +-
 .../version-management/gitlab/rubyEnv-ce/gemset.nix           | 4 ++--
 .../version-management/gitlab/rubyEnv-ee/Gemfile.lock         | 2 +-
 .../version-management/gitlab/rubyEnv-ee/gemset.nix           | 4 ++--
 4 files changed, 6 insertions(+), 6 deletions(-)

diff --git a/pkgs/applications/version-management/gitlab/rubyEnv-ce/Gemfile.lock b/pkgs/applications/version-management/gitlab/rubyEnv-ce/Gemfile.lock
index 9837a195d8c7..e215f12bbe6e 100644
--- a/pkgs/applications/version-management/gitlab/rubyEnv-ce/Gemfile.lock
+++ b/pkgs/applications/version-management/gitlab/rubyEnv-ce/Gemfile.lock
@@ -630,7 +630,7 @@ GEM
       pry (>= 0.10.4)
     public_suffix (3.0.3)
     pyu-ruby-sasl (0.0.3.3)
-    rack (1.6.10)
+    rack (1.6.11)
     rack-accept (0.4.5)
       rack (>= 0.4)
     rack-attack (4.4.1)
diff --git a/pkgs/applications/version-management/gitlab/rubyEnv-ce/gemset.nix b/pkgs/applications/version-management/gitlab/rubyEnv-ce/gemset.nix
index ee262b6b5d96..dfbd535aaa82 100644
--- a/pkgs/applications/version-management/gitlab/rubyEnv-ce/gemset.nix
+++ b/pkgs/applications/version-management/gitlab/rubyEnv-ce/gemset.nix
@@ -2320,10 +2320,10 @@
   rack = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0in0amn0kwvzmi8h5zg6ijrx5wpsf8h96zrfmnk1kwh2ql4sxs2q";
+      sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f";
       type = "gem";
     };
-    version = "1.6.10";
+    version = "1.6.11";
   };
   rack-accept = {
     dependencies = ["rack"];
diff --git a/pkgs/applications/version-management/gitlab/rubyEnv-ee/Gemfile.lock b/pkgs/applications/version-management/gitlab/rubyEnv-ee/Gemfile.lock
index 4355b3ae2717..28018c6c5c22 100644
--- a/pkgs/applications/version-management/gitlab/rubyEnv-ee/Gemfile.lock
+++ b/pkgs/applications/version-management/gitlab/rubyEnv-ee/Gemfile.lock
@@ -659,7 +659,7 @@ GEM
       pry (>= 0.10.4)
     public_suffix (3.0.3)
     pyu-ruby-sasl (0.0.3.3)
-    rack (1.6.10)
+    rack (1.6.11)
     rack-accept (0.4.5)
       rack (>= 0.4)
     rack-attack (4.4.1)
diff --git a/pkgs/applications/version-management/gitlab/rubyEnv-ee/gemset.nix b/pkgs/applications/version-management/gitlab/rubyEnv-ee/gemset.nix
index 03efc4e9600f..32fc41235f43 100644
--- a/pkgs/applications/version-management/gitlab/rubyEnv-ee/gemset.nix
+++ b/pkgs/applications/version-management/gitlab/rubyEnv-ee/gemset.nix
@@ -2441,10 +2441,10 @@
   rack = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0in0amn0kwvzmi8h5zg6ijrx5wpsf8h96zrfmnk1kwh2ql4sxs2q";
+      sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f";
       type = "gem";
     };
-    version = "1.6.10";
+    version = "1.6.11";
   };
   rack-accept = {
     dependencies = ["rack"];

From 63e5658222fa0299b235672b5e2ad03725c5462c Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Tue, 6 Nov 2018 09:12:37 +0000
Subject: [PATCH 0562/1129] redmine: rack: 1.6.10 -> 1.6.11

CVE-2018-16470: https://seclists.org/oss-sec/2018/q4/128
CVE-2018-16471: https://seclists.org/oss-sec/2018/q4/129
---
 pkgs/applications/version-management/redmine/Gemfile.lock | 4 ++--
 pkgs/applications/version-management/redmine/gemset.nix   | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/version-management/redmine/Gemfile.lock b/pkgs/applications/version-management/redmine/Gemfile.lock
index 54eed51cd868..c8ef35d19434 100644
--- a/pkgs/applications/version-management/redmine/Gemfile.lock
+++ b/pkgs/applications/version-management/redmine/Gemfile.lock
@@ -89,7 +89,7 @@ GEM
     protected_attributes (1.1.4)
       activemodel (>= 4.0.1, < 5.0)
     public_suffix (3.0.3)
-    rack (1.6.10)
+    rack (1.6.11)
     rack-openid (1.4.2)
       rack (>= 1.1.0)
       ruby-openid (>= 2.1.8)
@@ -201,4 +201,4 @@ DEPENDENCIES
   yard
 
 BUNDLED WITH
-   1.16.3
+   1.16.4
diff --git a/pkgs/applications/version-management/redmine/gemset.nix b/pkgs/applications/version-management/redmine/gemset.nix
index fe56298056b1..c0b8cb8d6e2d 100644
--- a/pkgs/applications/version-management/redmine/gemset.nix
+++ b/pkgs/applications/version-management/redmine/gemset.nix
@@ -350,10 +350,10 @@
   rack = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0in0amn0kwvzmi8h5zg6ijrx5wpsf8h96zrfmnk1kwh2ql4sxs2q";
+      sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f";
       type = "gem";
     };
-    version = "1.6.10";
+    version = "1.6.11";
   };
   rack-openid = {
     dependencies = ["rack" "ruby-openid"];

From 96f23c4cdd70d603cfd0a08878fc8d4fb4ad9fcd Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Tue, 6 Nov 2018 09:13:24 +0000
Subject: [PATCH 0563/1129] chefdk: rack: 2.0.3 -> 2.0.6

CVE-2018-16470: https://seclists.org/oss-sec/2018/q4/128
CVE-2018-16471: https://seclists.org/oss-sec/2018/q4/129
---
 pkgs/development/tools/chefdk/Gemfile.lock | 4 ++--
 pkgs/development/tools/chefdk/gemset.nix   | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/development/tools/chefdk/Gemfile.lock b/pkgs/development/tools/chefdk/Gemfile.lock
index 139649b78f14..545375d87805 100644
--- a/pkgs/development/tools/chefdk/Gemfile.lock
+++ b/pkgs/development/tools/chefdk/Gemfile.lock
@@ -252,7 +252,7 @@ GEM
       coderay (~> 1.1.0)
       method_source (~> 0.9.0)
     public_suffix (3.0.1)
-    rack (2.0.3)
+    rack (2.0.6)
     rainbow (2.2.2)
       rake
     rake (12.3.0)
@@ -397,4 +397,4 @@ DEPENDENCIES
   test-kitchen
 
 BUNDLED WITH
-   1.14.6
+   1.16.4
diff --git a/pkgs/development/tools/chefdk/gemset.nix b/pkgs/development/tools/chefdk/gemset.nix
index d4e97deea8dc..228b3cd85135 100644
--- a/pkgs/development/tools/chefdk/gemset.nix
+++ b/pkgs/development/tools/chefdk/gemset.nix
@@ -791,10 +791,10 @@
   rack = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "1kczgp2zwcrvp257dl8j4y3mnyqflxr7rn4vl9w1rwblznx9n74c";
+      sha256 = "1pcgv8dv4vkaczzlix8q3j68capwhk420cddzijwqgi2qb4lm1zm";
       type = "gem";
     };
-    version = "2.0.3";
+    version = "2.0.6";
   };
   rainbow = {
     dependencies = ["rake"];

From f2d0e1800d550ee33a1455bdadf0ad3b87d02081 Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Tue, 6 Nov 2018 09:13:57 +0000
Subject: [PATCH 0564/1129] mailcatcher: rack: 1.6.8 -> 1.6.11

CVE-2018-16470: https://seclists.org/oss-sec/2018/q4/128
CVE-2018-16471: https://seclists.org/oss-sec/2018/q4/129
---
 pkgs/development/web/mailcatcher/Gemfile.lock |  4 ++--
 pkgs/development/web/mailcatcher/gemset.nix   | 11 +++++++++--
 2 files changed, 11 insertions(+), 4 deletions(-)

diff --git a/pkgs/development/web/mailcatcher/Gemfile.lock b/pkgs/development/web/mailcatcher/Gemfile.lock
index 9a4969c11676..c953a311077e 100644
--- a/pkgs/development/web/mailcatcher/Gemfile.lock
+++ b/pkgs/development/web/mailcatcher/Gemfile.lock
@@ -16,7 +16,7 @@ GEM
     mime-types (3.1)
       mime-types-data (~> 3.2015)
     mime-types-data (3.2016.0521)
-    rack (1.6.8)
+    rack (1.6.11)
     rack-protection (1.5.3)
       rack
     sinatra (1.4.8)
@@ -40,4 +40,4 @@ DEPENDENCIES
   mailcatcher
 
 BUNDLED WITH
-   1.14.4
+   1.16.4
diff --git a/pkgs/development/web/mailcatcher/gemset.nix b/pkgs/development/web/mailcatcher/gemset.nix
index d9e95454a500..75e1336b1c3c 100644
--- a/pkgs/development/web/mailcatcher/gemset.nix
+++ b/pkgs/development/web/mailcatcher/gemset.nix
@@ -16,6 +16,7 @@
     version = "1.0.9.1";
   };
   mail = {
+    dependencies = ["mime-types"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0d7lhj2dw52ycls6xigkfz6zvfhc6qggply9iycjmcyj9760yvz9";
@@ -24,6 +25,7 @@
     version = "2.6.6";
   };
   mailcatcher = {
+    dependencies = ["eventmachine" "mail" "rack" "sinatra" "skinny" "sqlite3" "thin"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0h6gk8n18i5f651f244al1hscjzl27fpma4vqw0qhszqqpd5p3bx";
@@ -32,6 +34,7 @@
     version = "0.6.5";
   };
   mime-types = {
+    dependencies = ["mime-types-data"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0087z9kbnlqhci7fxh9f6il63hj1k02icq2rs0c6cppmqchr753m";
@@ -50,12 +53,13 @@
   rack = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "19m7aixb2ri7p1n0iqaqx8ldi97xdhvbxijbyrrcdcl6fv5prqza";
+      sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f";
       type = "gem";
     };
-    version = "1.6.8";
+    version = "1.6.11";
   };
   rack-protection = {
+    dependencies = ["rack"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0cvb21zz7p9wy23wdav63z5qzfn4nialik22yqp6gihkgfqqrh5r";
@@ -64,6 +68,7 @@
     version = "1.5.3";
   };
   sinatra = {
+    dependencies = ["rack" "rack-protection" "tilt"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0byxzl7rx3ki0xd7aiv1x8mbah7hzd8f81l65nq8857kmgzj1jqq";
@@ -72,6 +77,7 @@
     version = "1.4.8";
   };
   skinny = {
+    dependencies = ["eventmachine" "thin"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1y3yvx88ylgz4d2s1wskjk5rkmrcr15q3ibzp1q88qwzr5y493a9";
@@ -88,6 +94,7 @@
     version = "1.3.13";
   };
   thin = {
+    dependencies = ["daemons" "eventmachine" "rack"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0hrq9m3hb6pm8yrqshhg0gafkphdpvwcqmr7k722kgdisp3w91ga";

From 26bf4b3df3278a5bb645287eda013f60b1cc6d20 Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Tue, 6 Nov 2018 09:14:45 +0000
Subject: [PATCH 0565/1129] riemann-dash: rack: 1.6.4 -> 1.6.11

CVE-2018-16470: https://seclists.org/oss-sec/2018/q4/128
CVE-2018-16471: https://seclists.org/oss-sec/2018/q4/129
---
 pkgs/servers/monitoring/riemann-dash/Gemfile.lock | 4 ++--
 pkgs/servers/monitoring/riemann-dash/gemset.nix   | 6 ++++--
 2 files changed, 6 insertions(+), 4 deletions(-)

diff --git a/pkgs/servers/monitoring/riemann-dash/Gemfile.lock b/pkgs/servers/monitoring/riemann-dash/Gemfile.lock
index 1bfd80a897d3..00375fa4e30f 100644
--- a/pkgs/servers/monitoring/riemann-dash/Gemfile.lock
+++ b/pkgs/servers/monitoring/riemann-dash/Gemfile.lock
@@ -3,7 +3,7 @@ GEM
   specs:
     erubis (2.7.0)
     multi_json (1.3.6)
-    rack (1.6.4)
+    rack (1.6.11)
     rack-protection (1.5.3)
       rack
     riemann-dash (0.2.12)
@@ -27,4 +27,4 @@ DEPENDENCIES
   riemann-dash (= 0.2.12)
 
 BUNDLED WITH
-   1.11.2
+   1.16.4
diff --git a/pkgs/servers/monitoring/riemann-dash/gemset.nix b/pkgs/servers/monitoring/riemann-dash/gemset.nix
index 8a4d3ba58cb1..9298312f90e0 100644
--- a/pkgs/servers/monitoring/riemann-dash/gemset.nix
+++ b/pkgs/servers/monitoring/riemann-dash/gemset.nix
@@ -16,10 +16,10 @@
   rack = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "09bs295yq6csjnkzj7ncj50i6chfxrhmzg1pk6p0vd2lb9ac8pj5";
+      sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f";
       type = "gem";
     };
-    version = "1.6.4";
+    version = "1.6.11";
   };
   rack-protection = {
     dependencies = ["rack"];
@@ -30,6 +30,7 @@
     version = "1.5.3";
   };
   riemann-dash = {
+    dependencies = ["erubis" "multi_json" "sass" "sinatra" "webrick"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1y2vh9vcl21b6k2wqgz1y8bbcrl07r43s6q2vkgp35z1b28xcszy";
@@ -46,6 +47,7 @@
     version = "3.4.22";
   };
   sinatra = {
+    dependencies = ["rack" "rack-protection" "tilt"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1b81kbr65mmcl9cdq2r6yc16wklyp798rxkgmm5pr9fvsj7jwmxp";

From 5c8d153326e67402dfea5be62a7b476399796579 Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Tue, 6 Nov 2018 09:15:33 +0000
Subject: [PATCH 0566/1129] frab: rack: 1.6.4 -> 1.6.11

CVE-2018-16470: https://seclists.org/oss-sec/2018/q4/128
CVE-2018-16471: https://seclists.org/oss-sec/2018/q4/129
---
 pkgs/servers/web-apps/frab/Gemfile.lock |  2 +-
 pkgs/servers/web-apps/frab/gemset.nix   | 72 +++++++++++++++++++++++--
 2 files changed, 70 insertions(+), 4 deletions(-)

diff --git a/pkgs/servers/web-apps/frab/Gemfile.lock b/pkgs/servers/web-apps/frab/Gemfile.lock
index 06502ef59ad5..dc18be7a33db 100644
--- a/pkgs/servers/web-apps/frab/Gemfile.lock
+++ b/pkgs/servers/web-apps/frab/Gemfile.lock
@@ -181,7 +181,7 @@ GEM
     pry-rails (0.3.4)
       pry (>= 0.9.10)
     puma (3.9.1)
-    rack (1.6.4)
+    rack (1.6.11)
     rack-test (0.6.3)
       rack (>= 1.0)
     rails (4.2.7.1)
diff --git a/pkgs/servers/web-apps/frab/gemset.nix b/pkgs/servers/web-apps/frab/gemset.nix
index 449fbf1a5b6b..c3259a2709c9 100644
--- a/pkgs/servers/web-apps/frab/gemset.nix
+++ b/pkgs/servers/web-apps/frab/gemset.nix
@@ -1,5 +1,6 @@
 {
   actionmailer = {
+    dependencies = ["actionpack" "actionview" "activejob" "mail" "rails-dom-testing"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0lw1pss1mrjm7x7qcg9pvxv55rz3d994yf3mwmlfg1y12fxq00n3";
@@ -8,6 +9,7 @@
     version = "4.2.7.1";
   };
   actionpack = {
+    dependencies = ["actionview" "activesupport" "rack" "rack-test" "rails-dom-testing" "rails-html-sanitizer"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1ray5bvlmkimjax011zsw0mz9llfkqrfm7q1avjlp4i0kpcz8zlh";
@@ -16,6 +18,7 @@
     version = "4.2.7.1";
   };
   actionview = {
+    dependencies = ["activesupport" "builder" "erubis" "rails-dom-testing" "rails-html-sanitizer"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "11m2x5nlbqrw79fh6h7m444lrka7wwy32b0dvgqg7ilbzih43k0c";
@@ -24,6 +27,7 @@
     version = "4.2.7.1";
   };
   activejob = {
+    dependencies = ["activesupport" "globalid"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0ish5wd8nvmj7f6x1i22aw5ycizy5n1z1c7f3kyxmqwhw7lb0gaz";
@@ -32,6 +36,7 @@
     version = "4.2.7.1";
   };
   activemodel = {
+    dependencies = ["activesupport" "builder"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0acz0mbmahsc9mn41275fpfnrqwig5k09m3xhz3455kv90fn79v5";
@@ -40,6 +45,7 @@
     version = "4.2.7.1";
   };
   activerecord = {
+    dependencies = ["activemodel" "activesupport" "arel"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1lk8l6i9p7qfl0pg261v5yph0w0sc0vysrdzc6bm5i5rxgi68flj";
@@ -48,6 +54,7 @@
     version = "4.2.7.1";
   };
   activeresource = {
+    dependencies = ["activemodel" "activesupport" "rails-observers"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0nr5is20cx18s7vg8bdrdc996s2abl3h7fsi1q6mqsrzw7nrv2fa";
@@ -56,6 +63,7 @@
     version = "4.1.0";
   };
   activesupport = {
+    dependencies = ["i18n" "json" "minitest" "thread_safe" "tzinfo"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1gds12k7nxrcc09b727a458ndidy1nfcllj9x22jcaj7pppvq6r4";
@@ -80,6 +88,7 @@
     version = "2.4.0";
   };
   airbrussh = {
+    dependencies = ["sshkit"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0pv22d2kjdbsg9q45jca3f5gsylr2r1wfpn58g58xj4s4q4r95nx";
@@ -112,6 +121,7 @@
     version = "3.2.2";
   };
   bullet = {
+    dependencies = ["activesupport" "uniform_notifier"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "06pba7bdjnazbl0yhhvlina08nkawnm76zihkaam4k7fm0yrq1k0";
@@ -136,6 +146,7 @@
     version = "1.15.0";
   };
   capistrano = {
+    dependencies = ["i18n" "rake" "sshkit"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0f73w6gpml0ickmwky1cn6d8392q075zy10a323f3vmyvxyhr0jb";
@@ -144,6 +155,7 @@
     version = "3.4.1";
   };
   capistrano-bundler = {
+    dependencies = ["capistrano" "sshkit"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1f4iikm7pn0li2lj6p53wl0d6y7svn0h76z9c6c582mmwxa9c72p";
@@ -152,6 +164,7 @@
     version = "1.1.4";
   };
   capistrano-rails = {
+    dependencies = ["capistrano" "capistrano-bundler"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "03lzihrq72rwcqq7jiqak79wy0xbdnymn5gxj0bfgfjlg5kpgssw";
@@ -160,6 +173,7 @@
     version = "1.1.8";
   };
   capistrano-rvm = {
+    dependencies = ["capistrano" "sshkit"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "15sy8zcal041yy5kb7fcdqnxvndgdhg3w1kvb5dk7hfjk3ypznsa";
@@ -168,6 +182,7 @@
     version = "0.1.2";
   };
   capistrano3-puma = {
+    dependencies = ["capistrano" "puma"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0ynz1arnr07kcl0vsaa1znhp2ywhhs4fwndnkw8sasr9bydksln8";
@@ -184,6 +199,7 @@
     version = "1.3.7";
   };
   climate_control = {
+    dependencies = ["activesupport"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0krknwk6b8lwv1j9kjbxib6kf5zh4pxkf3y2vcyycx5d6nci1s55";
@@ -192,6 +208,7 @@
     version = "0.0.3";
   };
   cocaine = {
+    dependencies = ["climate_control"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "01kk5xd7lspbkdvn6nyj0y51zhvia3z6r4nalbdcqw5fbsywwi7d";
@@ -216,6 +233,7 @@
     version = "1.1.1";
   };
   coffee-rails = {
+    dependencies = ["coffee-script" "railties"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1mv1kaw3z4ry6cm51w8pfrbby40gqwxanrqyqr0nvs8j1bscc1gw";
@@ -224,6 +242,7 @@
     version = "4.1.1";
   };
   coffee-script = {
+    dependencies = ["coffee-script-source" "execjs"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0rc7scyk7mnpfxqv5yy4y5q1hx3i7q3ahplcp4bq2g5r24g2izl2";
@@ -264,6 +283,7 @@
     version = "2.1.1";
   };
   dotenv-rails = {
+    dependencies = ["dotenv" "railties"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "17s6c0yqaz01xd5wywjscbvv0pa3grak2lhwby91j84qm6h95vxz";
@@ -280,6 +300,7 @@
     version = "2.7.0";
   };
   exception_notification = {
+    dependencies = ["actionmailer" "activesupport"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1vclsr0rjfy1khvqyj67lgpa0v14nb542vvjkyaswn367nnmijhw";
@@ -296,6 +317,7 @@
     version = "2.7.0";
   };
   factory_girl = {
+    dependencies = ["activesupport"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1xzl4z9z390fsnyxp10c9if2n46zan3n6zwwpfnwc33crv4s410i";
@@ -304,6 +326,7 @@
     version = "4.7.0";
   };
   factory_girl_rails = {
+    dependencies = ["factory_girl" "railties"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0hzpirb33xdqaz44i1mbcfv0icjrghhgaz747llcfsflljd4pa4r";
@@ -312,6 +335,7 @@
     version = "4.7.0";
   };
   faker = {
+    dependencies = ["i18n"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "09amnh5d0m3q2gpb0vr9spbfa8l2nc0kl3s79y6sx7a16hrl4vvc";
@@ -328,6 +352,7 @@
     version = "0.6.9";
   };
   globalid = {
+    dependencies = ["activesupport"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "11plkgyl3w9k4y2scc1igvpgwyz4fnmsr63h2q4j8wkb48nlnhak";
@@ -336,6 +361,7 @@
     version = "0.3.7";
   };
   haml = {
+    dependencies = ["tilt"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0mrzjgkygvfii66bbylj2j93na8i89998yi01fin3whwqbvx0m1p";
@@ -344,6 +370,7 @@
     version = "4.0.7";
   };
   httparty = {
+    dependencies = ["multi_xml"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1msa213hclsv14ijh49i1wggf9avhnj2j4xr58m9jx6fixlbggw6";
@@ -360,6 +387,7 @@
     version = "0.7.0";
   };
   jbuilder = {
+    dependencies = ["activesupport" "multi_json"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1jbh1296imd0arc9nl1m71yfd7kg505p8srr1ijpsqv4hhbz5qci";
@@ -376,6 +404,7 @@
     version = "1.2.1";
   };
   jquery-rails = {
+    dependencies = ["rails-dom-testing" "railties" "thor"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0prqyixv7j2qlq67qdr3miwcyvi27b9a82j51gbpb6vcl0ig2rik";
@@ -384,6 +413,7 @@
     version = "4.2.1";
   };
   jquery-ui-rails = {
+    dependencies = ["railties"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1gfygrv4bjpjd2c377lw7xzk1b77rxjyy3w6wl4bq1gkqvyrkx77";
@@ -400,6 +430,7 @@
     version = "1.8.3";
   };
   launchy = {
+    dependencies = ["addressable"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "190lfbiy1vwxhbgn4nl4dcbzxvm049jwc158r2x7kq3g5khjrxa2";
@@ -408,6 +439,7 @@
     version = "2.4.3";
   };
   letter_opener = {
+    dependencies = ["launchy"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1pcrdbxvp2x5six8fqn8gf09bn9rd3jga76ds205yph5m8fsda21";
@@ -416,6 +448,7 @@
     version = "1.4.1";
   };
   localized_language_select = {
+    dependencies = ["rails"];
     source = {
       fetchSubmodules = false;
       rev = "85df6b97789de6e29c630808b630e56a1b76f80c";
@@ -426,6 +459,7 @@
     version = "0.3.0";
   };
   loofah = {
+    dependencies = ["nokogiri"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "109ps521p0sr3kgc460d58b4pr1z4mqggan2jbsf0aajy9s6xis8";
@@ -434,6 +468,7 @@
     version = "2.0.3";
   };
   mail = {
+    dependencies = ["mime-types"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0c9vqfy0na9b5096i5i4qvrvhwamjnmajhgqi3kdsdfl8l6agmkp";
@@ -450,6 +485,7 @@
     version = "0.8.2";
   };
   mime-types = {
+    dependencies = ["mime-types-data"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0087z9kbnlqhci7fxh9f6il63hj1k02icq2rs0c6cppmqchr753m";
@@ -514,6 +550,7 @@
     version = "0.4.4";
   };
   net-scp = {
+    dependencies = ["net-ssh"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0b0jqrcsp4bbi4n4mzyf70cp2ysyp6x07j8k8cqgxnvb4i3a134j";
@@ -530,6 +567,7 @@
     version = "3.2.0";
   };
   nokogiri = {
+    dependencies = ["mini_portile2" "pkg-config"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "11sbmpy60ynak6s3794q32lc99hs448msjy8rkp84ay7mq7zqspv";
@@ -538,6 +576,7 @@
     version = "1.6.7.2";
   };
   paper_trail = {
+    dependencies = ["activerecord" "request_store"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1w3y2h1w0kml2fmzx4sdcrhnbj273npwrs0cx91xdgy2qfjj6hmr";
@@ -546,6 +585,7 @@
     version = "5.2.2";
   };
   paperclip = {
+    dependencies = ["activemodel" "activesupport" "cocaine" "mime-types" "mimemagic"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0r8krh5xg790845wzlc2r7l0jwskw4c4wk9xh4bpprqykwaghg0r";
@@ -578,6 +618,7 @@
     version = "1.1.7";
   };
   polyamorous = {
+    dependencies = ["activerecord"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1501y9l81b2lwb93fkycq8dr1bi6qcdhia3qv4fddnmrdihkl3pv";
@@ -586,6 +627,7 @@
     version = "1.3.1";
   };
   prawn = {
+    dependencies = ["pdf-core" "ttfunk"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "04pxzfmmy8a6bv3zvh1mmyy5zi4bj994kq1v6qnlq2xlhvg4cxjc";
@@ -594,6 +636,7 @@
     version = "0.15.0";
   };
   prawn_rails = {
+    dependencies = ["prawn" "railties"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "19m1pv2rsl3rf9rni78l8137dy2sq1r2443biv19wi9nis2pvgdg";
@@ -602,6 +645,7 @@
     version = "0.0.11";
   };
   pry = {
+    dependencies = ["coderay" "method_source" "slop"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "05xbzyin63aj2prrv8fbq2d5df2mid93m81hz5bvf2v4hnzs42ar";
@@ -610,6 +654,7 @@
     version = "0.10.4";
   };
   pry-byebug = {
+    dependencies = ["byebug" "pry"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0pvc94kgxd33p6iz41ghyadq8zfbjhkk07nvz2mbh3yhrc8w7gmw";
@@ -618,6 +663,7 @@
     version = "3.4.0";
   };
   pry-rails = {
+    dependencies = ["pry"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0a2iinvabis2xmv0z7z7jmh7bbkkngxj2qixfdg5m6qj9x8k1kx6";
@@ -636,12 +682,13 @@
   rack = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "09bs295yq6csjnkzj7ncj50i6chfxrhmzg1pk6p0vd2lb9ac8pj5";
+      sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f";
       type = "gem";
     };
-    version = "1.6.4";
+    version = "1.6.11";
   };
   rack-test = {
+    dependencies = ["rack"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0h6x5jq24makgv2fq5qqgjlrk74dxfy62jif9blk43llw8ib2q7z";
@@ -650,6 +697,7 @@
     version = "0.6.3";
   };
   rails = {
+    dependencies = ["actionmailer" "actionpack" "actionview" "activejob" "activemodel" "activerecord" "activesupport" "railties" "sprockets-rails"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1avd16ir7qx23dcnz1b3cafq1lja6rq0w222bs658p9n33rbw54l";
@@ -658,6 +706,7 @@
     version = "4.2.7.1";
   };
   rails-deprecated_sanitizer = {
+    dependencies = ["activesupport"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0qxymchzdxww8bjsxj05kbf86hsmrjx40r41ksj0xsixr2gmhbbj";
@@ -666,6 +715,7 @@
     version = "1.0.3";
   };
   rails-dom-testing = {
+    dependencies = ["activesupport" "nokogiri" "rails-deprecated_sanitizer"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1v8jl6803mbqpxh4hn0szj081q1a3ap0nb8ni0qswi7z4la844v8";
@@ -674,6 +724,7 @@
     version = "1.0.7";
   };
   rails-html-sanitizer = {
+    dependencies = ["loofah"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "138fd86kv073zqfx0xifm646w6bgw2lr8snk16lknrrfrss8xnm7";
@@ -682,6 +733,7 @@
     version = "1.0.3";
   };
   rails-observers = {
+    dependencies = ["activemodel"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1lsw19jzmvipvrfy2z04hi7r29dvkfc43h43vs67x6lsj9rxwwcy";
@@ -690,6 +742,7 @@
     version = "0.1.2";
   };
   railties = {
+    dependencies = ["actionpack" "activesupport" "rake" "thor"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "04rz7cn64zzvq7lnhc9zqmaqmqkq84q25v0ym9lcw75j1cj1mrq4";
@@ -706,6 +759,7 @@
     version = "11.3.0";
   };
   ransack = {
+    dependencies = ["actionpack" "activerecord" "activesupport" "i18n" "polyamorous"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0cya3wygwjhj8rckckkl387bmva4nyfvqcl0qhp9hk3zv8y6wxjc";
@@ -738,6 +792,7 @@
     version = "0.8.8";
   };
   roust = {
+    dependencies = ["activesupport" "httparty" "mail"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1zdnwxxh34psv0iybcdnk9w4dpgpr07j3w1fvigkpccgz5vs82qk";
@@ -746,6 +801,7 @@
     version = "1.8.9";
   };
   rqrcode = {
+    dependencies = ["chunky_png"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0h1pnnydgs032psakvg3l779w3ghbn08ajhhhw19hpmnfhrs8k0a";
@@ -762,6 +818,7 @@
     version = "3.4.22";
   };
   sass-rails = {
+    dependencies = ["railties" "sass" "sprockets" "sprockets-rails" "tilt"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0iji20hb8crncz14piss1b29bfb6l89sz3ai5fny3iw39vnxkdcb";
@@ -770,6 +827,7 @@
     version = "5.0.6";
   };
   shoulda = {
+    dependencies = ["shoulda-context" "shoulda-matchers"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0csmf15a7mcinfq54lfa4arp0f4b2jmwva55m0p94hdf3pxnjymy";
@@ -786,6 +844,7 @@
     version = "1.2.1";
   };
   shoulda-matchers = {
+    dependencies = ["activesupport"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0d3ryqcsk1n9y35bx5wxnqbgw4m8b3c79isazdjnnbg8crdp72d0";
@@ -794,6 +853,7 @@
     version = "2.8.0";
   };
   simple_form = {
+    dependencies = ["actionpack" "activemodel"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0ii3rkkbj5cc10f5rdiny18ncdh36kijr25cah0ybbr7kigh3v3b";
@@ -810,6 +870,7 @@
     version = "3.6.0";
   };
   sprockets = {
+    dependencies = ["concurrent-ruby" "rack"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0jzsfiladswnzbrwqfiaj1xip68y58rwx0lpmj907vvq47k87gj1";
@@ -818,6 +879,7 @@
     version = "3.7.0";
   };
   sprockets-rails = {
+    dependencies = ["actionpack" "activesupport" "sprockets"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1zr9vk2vn44wcn4265hhnnnsciwlmqzqc6bnx78if1xcssxj6x44";
@@ -834,6 +896,7 @@
     version = "1.3.11";
   };
   sshkit = {
+    dependencies = ["net-scp" "net-ssh"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0wpqvr2dyxwp3shwh0221i1ahyg8vd2hyilmjvdi026l00gk2j4l";
@@ -842,6 +905,7 @@
     version = "1.11.3";
   };
   sucker_punch = {
+    dependencies = ["concurrent-ruby"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0l8b53mlzl568kdl4la8kcjjcnawmbl0q6hq9c3kkyippa5c0x55";
@@ -890,6 +954,7 @@
     version = "1.1.1";
   };
   tzinfo = {
+    dependencies = ["thread_safe"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1c01p3kg6xvy1cgjnzdfq45fggbwish8krd0h864jvbpybyx7cgx";
@@ -898,6 +963,7 @@
     version = "1.2.2";
   };
   uglifier = {
+    dependencies = ["execjs"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0f30s1631k03x4wm7xyc79g92pppzvyysa773zsaq2kcry1pmifc";
@@ -929,4 +995,4 @@
     };
     version = "0.9.5";
   };
-}
+}
\ No newline at end of file

From b5931668c2e992226290cd4b75bdee4cb2cf96fc Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Tue, 6 Nov 2018 09:17:21 +0000
Subject: [PATCH 0567/1129] oxidized: rack: 1.6.9 -> 1.6.11

CVE-2018-16470: https://seclists.org/oss-sec/2018/q4/128
CVE-2018-16471: https://seclists.org/oss-sec/2018/q4/129
---
 pkgs/tools/admin/oxidized/Gemfile.lock | 4 ++--
 pkgs/tools/admin/oxidized/gemset.nix   | 6 +++---
 2 files changed, 5 insertions(+), 5 deletions(-)

diff --git a/pkgs/tools/admin/oxidized/Gemfile.lock b/pkgs/tools/admin/oxidized/Gemfile.lock
index 1570adbcf089..e4bdf5ccf394 100644
--- a/pkgs/tools/admin/oxidized/Gemfile.lock
+++ b/pkgs/tools/admin/oxidized/Gemfile.lock
@@ -29,7 +29,7 @@ GEM
       sinatra (~> 1.4, >= 1.4.6)
       sinatra-contrib (~> 1.4, >= 1.4.6)
     puma (3.11.3)
-    rack (1.6.9)
+    rack (1.6.11)
     rack-protection (1.5.5)
       rack
     rack-test (1.0.0)
@@ -66,4 +66,4 @@ DEPENDENCIES
   oxidized-web
 
 BUNDLED WITH
-   1.14.6
+   1.16.4
diff --git a/pkgs/tools/admin/oxidized/gemset.nix b/pkgs/tools/admin/oxidized/gemset.nix
index f472b14e7967..5a8b2ecefdcb 100644
--- a/pkgs/tools/admin/oxidized/gemset.nix
+++ b/pkgs/tools/admin/oxidized/gemset.nix
@@ -103,10 +103,10 @@
   rack = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "03w1ri5l91q800f1bdcdl5rbagy7s4kml136b42s2lmxmznxhr07";
+      sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f";
       type = "gem";
     };
-    version = "1.6.9";
+    version = "1.6.11";
   };
   rack-protection = {
     dependencies = ["rack"];
@@ -203,4 +203,4 @@
     };
     version = "2.0.8";
   };
-}
+}
\ No newline at end of file

From e2d72ed9543488420e0c1e41a5f01839dd28a307 Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Tue, 6 Nov 2018 09:17:53 +0000
Subject: [PATCH 0568/1129] metasploit: rack: 1.6.8 -> 1.6.11

CVE-2018-16470: https://seclists.org/oss-sec/2018/q4/128
CVE-2018-16471: https://seclists.org/oss-sec/2018/q4/129
---
 pkgs/tools/security/metasploit/Gemfile.lock |  4 +-
 pkgs/tools/security/metasploit/gemset.nix   | 52 +++++++++++++++++++--
 2 files changed, 51 insertions(+), 5 deletions(-)

diff --git a/pkgs/tools/security/metasploit/Gemfile.lock b/pkgs/tools/security/metasploit/Gemfile.lock
index d15df5e56c2b..a84e3d08f438 100644
--- a/pkgs/tools/security/metasploit/Gemfile.lock
+++ b/pkgs/tools/security/metasploit/Gemfile.lock
@@ -187,7 +187,7 @@ GEM
       arel (>= 4.0.1)
       pg_array_parser (~> 0.0.9)
     public_suffix (2.0.5)
-    rack (1.6.8)
+    rack (1.6.11)
     rack-test (0.6.3)
       rack (>= 1.0)
     rails-deprecated_sanitizer (1.0.3)
@@ -292,4 +292,4 @@ DEPENDENCIES
   metasploit-framework!
 
 BUNDLED WITH
-   1.15.0
+   1.16.4
diff --git a/pkgs/tools/security/metasploit/gemset.nix b/pkgs/tools/security/metasploit/gemset.nix
index 4262e64efb04..938817cb64f6 100644
--- a/pkgs/tools/security/metasploit/gemset.nix
+++ b/pkgs/tools/security/metasploit/gemset.nix
@@ -1,5 +1,6 @@
 {
   actionpack = {
+    dependencies = ["actionview" "activesupport" "rack" "rack-test" "rails-dom-testing" "rails-html-sanitizer"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1kgrq74gp2czzxr0f2sqrc98llz03lgq498300z2z5n4khgznwc4";
@@ -8,6 +9,7 @@
     version = "4.2.9";
   };
   actionview = {
+    dependencies = ["activesupport" "builder" "erubis" "rails-dom-testing" "rails-html-sanitizer"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "04kgp4gmahw31miz8xdq1pns14qmvvzd14fgfv7fg9klkw3bxyyp";
@@ -16,6 +18,7 @@
     version = "4.2.9";
   };
   activemodel = {
+    dependencies = ["activesupport" "builder"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1qxmivny0ka5s3iyap08sn9bp2bd9wrhqp2njfw26hr9wsjk5kfv";
@@ -24,6 +27,7 @@
     version = "4.2.9";
   };
   activerecord = {
+    dependencies = ["activemodel" "activesupport" "arel"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "18i790dfhi4ndypd1pj9pv08knpxr2sayvvwfq7axj5jfwgpmrqb";
@@ -32,6 +36,7 @@
     version = "4.2.9";
   };
   activesupport = {
+    dependencies = ["i18n" "minitest" "thread_safe" "tzinfo"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1d0a362p3m2m2kljichar2pwq0qm4vblc3njy1rdzm09ckzd45sp";
@@ -40,6 +45,7 @@
     version = "4.2.9";
   };
   addressable = {
+    dependencies = ["public_suffix"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1i8q32a4gr0zghxylpyy7jfqwxvwrivsxflg9mks6kx92frh75mh";
@@ -64,6 +70,7 @@
     version = "6.0.4";
   };
   arel-helpers = {
+    dependencies = ["activerecord"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1sx4qbzhld3a99175p2krz3hv1npc42rv3sd8x4awzkgplg3zy9c";
@@ -144,6 +151,7 @@
     version = "2.7.0";
   };
   faraday = {
+    dependencies = ["multipart-post"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1gyqsj7vlqynwvivf9485zwmcj04v1z7gq362z0b8zw2zf4ag0hw";
@@ -184,6 +192,7 @@
     version = "0.8.6";
   };
   jsobfu = {
+    dependencies = ["rkelly-remix"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1hchns89cfj0gggm2zbr7ghb630imxm2x2d21ffx2jlasn9xbkyk";
@@ -200,6 +209,7 @@
     version = "2.1.0";
   };
   loofah = {
+    dependencies = ["nokogiri"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "109ps521p0sr3kgc460d58b4pr1z4mqggan2jbsf0aajy9s6xis8";
@@ -216,6 +226,7 @@
     version = "1.0.3";
   };
   metasploit-concern = {
+    dependencies = ["activemodel" "activesupport" "railties"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0v9lm225fhzhnbjcc0vwb38ybikxwzlv8116rrrkndzs8qy79297";
@@ -224,6 +235,7 @@
     version = "2.0.5";
   };
   metasploit-credential = {
+    dependencies = ["metasploit-concern" "metasploit-model" "metasploit_data_models" "pg" "railties" "rex-socket" "rubyntlm" "rubyzip"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1flahrcl5hf4bncqs40mry6pkffvmir85kqzkad22x3dh6crw50i";
@@ -232,6 +244,7 @@
     version = "2.0.12";
   };
   metasploit-framework = {
+    dependencies = ["actionpack" "activerecord" "activesupport" "backports" "bcrypt" "bcrypt_pbkdf" "bit-struct" "dnsruby" "filesize" "jsobfu" "json" "metasm" "metasploit-concern" "metasploit-credential" "metasploit-model" "metasploit-payloads" "metasploit_data_models" "metasploit_payloads-mettle" "msgpack" "nessus_rest" "net-ssh" "network_interface" "nexpose" "nokogiri" "octokit" "openssl-ccm" "openvas-omp" "packetfu" "patch_finder" "pcaprub" "pdf-reader" "pg" "railties" "rb-readline" "rbnacl" "rbnacl-libsodium" "recog" "redcarpet" "rex-arch" "rex-bin_tools" "rex-core" "rex-encoder" "rex-exploitation" "rex-java" "rex-mime" "rex-nop" "rex-ole" "rex-powershell" "rex-random_identifier" "rex-registry" "rex-rop_builder" "rex-socket" "rex-sslscan" "rex-struct2" "rex-text" "rex-zip" "robots" "ruby_smb" "rubyntlm" "rubyzip" "sqlite3" "sshkey" "tzinfo" "tzinfo-data" "windows_error" "xdr" "xmlrpc"];
     source = {
       fetchSubmodules = false;
       rev = "dbec1c2d2ae4bd77276cbfb3c6ee2902048b9453";
@@ -242,6 +255,7 @@
     version = "4.16.1";
   };
   metasploit-model = {
+    dependencies = ["activemodel" "activesupport" "railties"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "05pnai1cv00xw87rrz38dz4s3ss45s90290d0knsy1mq6rp8yvmw";
@@ -258,6 +272,7 @@
     version = "1.3.1";
   };
   metasploit_data_models = {
+    dependencies = ["activerecord" "activesupport" "arel-helpers" "metasploit-concern" "metasploit-model" "pg" "postgres_ext" "railties" "recog"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0j3ijxn6n3ack9572a74cwknijymy41c8rx34njyhg25lx4hbvah";
@@ -338,6 +353,7 @@
     version = "6.1.1";
   };
   nokogiri = {
+    dependencies = ["mini_portile2"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1nffsyx1xjg6v5n9rrbi8y1arrcx2i5f21cp6clgh9iwiqkr7rnn";
@@ -346,6 +362,7 @@
     version = "1.8.0";
   };
   octokit = {
+    dependencies = ["sawyer"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0h6cm7bi0y7ysjgwws3paaipqdld6c0m0niazrjahhpz88qqq1g4";
@@ -370,6 +387,7 @@
     version = "0.0.4";
   };
   packetfu = {
+    dependencies = ["pcaprub"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "16ppq9wfxq4x2hss61l5brs3s6fmi8gb50mnp1nnnzb1asq4g8ll";
@@ -394,6 +412,7 @@
     version = "0.12.4";
   };
   pdf-reader = {
+    dependencies = ["Ascii85" "afm" "hashery" "ruby-rc4" "ttfunk"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0nlammdpjy3padmzxhsql7mw31jyqp88n6bdffiarv5kzl4s3y7p";
@@ -418,6 +437,7 @@
     version = "0.0.9";
   };
   postgres_ext = {
+    dependencies = ["activerecord" "arel" "pg_array_parser"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1lbp1qf5s1addhznm7d4bzks9adh7jpilgcsr8k7mbd0a1ailcgc";
@@ -436,12 +456,13 @@
   rack = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "19m7aixb2ri7p1n0iqaqx8ldi97xdhvbxijbyrrcdcl6fv5prqza";
+      sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f";
       type = "gem";
     };
-    version = "1.6.8";
+    version = "1.6.11";
   };
   rack-test = {
+    dependencies = ["rack"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0h6x5jq24makgv2fq5qqgjlrk74dxfy62jif9blk43llw8ib2q7z";
@@ -450,6 +471,7 @@
     version = "0.6.3";
   };
   rails-deprecated_sanitizer = {
+    dependencies = ["activesupport"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0qxymchzdxww8bjsxj05kbf86hsmrjx40r41ksj0xsixr2gmhbbj";
@@ -458,6 +480,7 @@
     version = "1.0.3";
   };
   rails-dom-testing = {
+    dependencies = ["activesupport" "nokogiri" "rails-deprecated_sanitizer"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1ny7mbjxhq20rzg4pivvyvk14irmc7cn20kxfk3vc0z2r2c49p8r";
@@ -466,6 +489,7 @@
     version = "1.0.8";
   };
   rails-html-sanitizer = {
+    dependencies = ["loofah"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "138fd86kv073zqfx0xifm646w6bgw2lr8snk16lknrrfrss8xnm7";
@@ -474,6 +498,7 @@
     version = "1.0.3";
   };
   railties = {
+    dependencies = ["actionpack" "activesupport" "rake" "thor"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1g5jnk1zllm2fr06lixq7gv8l2cwqc99akv7886gz6lshijpfyxd";
@@ -498,6 +523,7 @@
     version = "0.5.5";
   };
   rbnacl = {
+    dependencies = ["ffi"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "08dkigw8wdx53hviw1zqrs7rcrzqcwh9jd3dvwr72013z9fmyp48";
@@ -506,6 +532,7 @@
     version = "4.0.2";
   };
   rbnacl-libsodium = {
+    dependencies = ["rbnacl"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1323fli41m01af13xz5xvabsjnz09si1b9l4qd2p802kq0dr61gd";
@@ -514,6 +541,7 @@
     version = "1.0.13";
   };
   recog = {
+    dependencies = ["nokogiri"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0h023ykrrra74bpbibkyg083kafaswvraw4naw9p1ghcjzn9ggj3";
@@ -530,6 +558,7 @@
     version = "3.4.0";
   };
   rex-arch = {
+    dependencies = ["rex-text"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1izzalmjwdyib8y0xlgys8qb60di6xyjk485ylgh14p47wkyc6yp";
@@ -538,6 +567,7 @@
     version = "0.1.11";
   };
   rex-bin_tools = {
+    dependencies = ["metasm" "rex-arch" "rex-core" "rex-struct2" "rex-text"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "01hi1cjr68adp47nxbjfprvn0r3b72r4ib82x9j33bf2pny6nvaw";
@@ -554,6 +584,7 @@
     version = "0.1.12";
   };
   rex-encoder = {
+    dependencies = ["metasm" "rex-arch" "rex-text"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1zm5jdxgyyp8pkfqwin34izpxdrmglx6vmk20ifnvcsm55c9m70z";
@@ -562,6 +593,7 @@
     version = "0.1.4";
   };
   rex-exploitation = {
+    dependencies = ["jsobfu" "metasm" "rex-arch" "rex-encoder" "rex-text"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0gbj28jqaaldpk4qzysgcl6m0wcqx3gcldarqdk55p5z9zasrk19";
@@ -578,6 +610,7 @@
     version = "0.1.5";
   };
   rex-mime = {
+    dependencies = ["rex-text"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "15a14kz429h7pn81ysa6av3qijxjmxagjff6dyss5v394fxzxf4a";
@@ -586,6 +619,7 @@
     version = "0.1.5";
   };
   rex-nop = {
+    dependencies = ["rex-arch"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0aigf9qsqsmiraa6zvfy1a7cyvf7zc3iyhzxi6fjv5sb8f64d6ny";
@@ -594,6 +628,7 @@
     version = "0.1.1";
   };
   rex-ole = {
+    dependencies = ["rex-text"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1pnzbqfnvbs0vc0z0ryszk3fxhgxrjd6gzwqa937rhlphwp5jpww";
@@ -602,6 +637,7 @@
     version = "0.1.6";
   };
   rex-powershell = {
+    dependencies = ["rex-random_identifier" "rex-text"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0nl60fdd1rlckk95d3s3y873w84vb0sgwvwxdzv414qxz8icpjnm";
@@ -610,6 +646,7 @@
     version = "0.1.72";
   };
   rex-random_identifier = {
+    dependencies = ["rex-text"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0cksrljaw61mdjvbmj9vqqhd8nra7jv466w5nim47n73rj72jc19";
@@ -626,6 +663,7 @@
     version = "0.1.3";
   };
   rex-rop_builder = {
+    dependencies = ["metasm" "rex-core" "rex-text"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0xjd3d6wnbq4ym0d0m268md8fb16f2hbwrahvxnl14q63fj9i3wy";
@@ -634,6 +672,7 @@
     version = "0.1.3";
   };
   rex-socket = {
+    dependencies = ["rex-core"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0bkr64qrfy2mcv6cpp2z2rn9npgn9s0yyagzjh7kawbm80ldwf2h";
@@ -642,6 +681,7 @@
     version = "0.1.8";
   };
   rex-sslscan = {
+    dependencies = ["rex-core" "rex-socket" "rex-text"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "06gbx45q653ajcx099p0yxdqqxazfznbrqshd4nwiwg1p498lmyx";
@@ -666,6 +706,7 @@
     version = "0.2.15";
   };
   rex-zip = {
+    dependencies = ["rex-text"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1mbfryyhcw47i7jb8cs8vilbyqgyiyjkfl1ngl6wdbf7d87dwdw7";
@@ -698,6 +739,7 @@
     version = "0.1.5";
   };
   ruby_smb = {
+    dependencies = ["bindata" "rubyntlm" "windows_error"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1jby5wlppxhc2jlqldic05aqd5l57171lsxqv86702grk665n612";
@@ -722,6 +764,7 @@
     version = "1.2.1";
   };
   sawyer = {
+    dependencies = ["addressable" "faraday"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0sv1463r7bqzvx4drqdmd36m7rrv6sf1v3c6vswpnq3k6vdw2dvd";
@@ -770,6 +813,7 @@
     version = "1.5.1";
   };
   tzinfo = {
+    dependencies = ["thread_safe"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "05r81lk7q7275rdq7xipfm0yxgqyd2ggh73xpc98ypngcclqcscl";
@@ -778,6 +822,7 @@
     version = "1.2.3";
   };
   tzinfo-data = {
+    dependencies = ["tzinfo"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "1n83rmy476d4qmzq74qx0j7lbcpskbvrj1bmy3np4d5pydyw2yky";
@@ -794,6 +839,7 @@
     version = "0.1.2";
   };
   xdr = {
+    dependencies = ["activemodel" "activesupport"];
     source = {
       remotes = ["https://rubygems.org"];
       sha256 = "0c5cp1k4ij3xq1q6fb0f6xv5b65wy18y7bhwvsdx8wd0zyg3x96m";
@@ -809,4 +855,4 @@
     };
     version = "0.3.0";
   };
-}
+}
\ No newline at end of file

From df68cd5ea32cbe3abee5ab66db8d7698526d586d Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Tue, 6 Nov 2018 09:18:24 +0000
Subject: [PATCH 0569/1129] bcat: rack: 1.6.8 -> 1.6.11

CVE-2018-16470: https://seclists.org/oss-sec/2018/q4/128
CVE-2018-16471: https://seclists.org/oss-sec/2018/q4/129
---
 pkgs/tools/text/bcat/Gemfile.lock | 4 ++--
 pkgs/tools/text/bcat/gemset.nix   | 4 ++--
 2 files changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/tools/text/bcat/Gemfile.lock b/pkgs/tools/text/bcat/Gemfile.lock
index c39ebc279109..fa67e6e28dbd 100644
--- a/pkgs/tools/text/bcat/Gemfile.lock
+++ b/pkgs/tools/text/bcat/Gemfile.lock
@@ -3,7 +3,7 @@ GEM
   specs:
     bcat (0.6.2)
       rack (~> 1.0)
-    rack (1.6.8)
+    rack (1.6.11)
 
 PLATFORMS
   ruby
@@ -12,4 +12,4 @@ DEPENDENCIES
   bcat
 
 BUNDLED WITH
-   1.15.4
+   1.16.4
diff --git a/pkgs/tools/text/bcat/gemset.nix b/pkgs/tools/text/bcat/gemset.nix
index 0654e35399d9..744c0e6e107b 100644
--- a/pkgs/tools/text/bcat/gemset.nix
+++ b/pkgs/tools/text/bcat/gemset.nix
@@ -11,9 +11,9 @@
   rack = {
     source = {
       remotes = ["http://rubygems.org"];
-      sha256 = "19m7aixb2ri7p1n0iqaqx8ldi97xdhvbxijbyrrcdcl6fv5prqza";
+      sha256 = "1g9926ln2lw12lfxm4ylq1h6nl0rafl10za3xvjzc87qvnqic87f";
       type = "gem";
     };
-    version = "1.6.8";
+    version = "1.6.11";
   };
 }
\ No newline at end of file

From 652e59965a6cdaf85ada4232b19b8c64c8a2d234 Mon Sep 17 00:00:00 2001
From: Alyssa Ross <hi@alyssa.is>
Date: Tue, 6 Nov 2018 09:18:59 +0000
Subject: [PATCH 0570/1129] asciidoctor: rack: 2.0.5 -> 2.0.6

CVE-2018-16470: https://seclists.org/oss-sec/2018/q4/128
CVE-2018-16471: https://seclists.org/oss-sec/2018/q4/129
---
 pkgs/tools/typesetting/asciidoctor/Gemfile.lock | 4 ++--
 pkgs/tools/typesetting/asciidoctor/gemset.nix   | 6 ++----
 2 files changed, 4 insertions(+), 6 deletions(-)

diff --git a/pkgs/tools/typesetting/asciidoctor/Gemfile.lock b/pkgs/tools/typesetting/asciidoctor/Gemfile.lock
index 04f9029e6e5a..59e8fd06ef2d 100644
--- a/pkgs/tools/typesetting/asciidoctor/Gemfile.lock
+++ b/pkgs/tools/typesetting/asciidoctor/Gemfile.lock
@@ -69,7 +69,7 @@ GEM
     public_suffix (3.0.3)
     pygments.rb (1.2.1)
       multi_json (>= 1.0.0)
-    rack (2.0.5)
+    rack (2.0.6)
     ruby-enum (0.7.2)
       i18n
     ruby-rc4 (0.1.5)
@@ -103,4 +103,4 @@ DEPENDENCIES
   pygments.rb
 
 BUNDLED WITH
-   1.14.6
+   1.16.4
diff --git a/pkgs/tools/typesetting/asciidoctor/gemset.nix b/pkgs/tools/typesetting/asciidoctor/gemset.nix
index 8b960fa3d930..034ab174e8a3 100644
--- a/pkgs/tools/typesetting/asciidoctor/gemset.nix
+++ b/pkgs/tools/typesetting/asciidoctor/gemset.nix
@@ -307,14 +307,12 @@
     version = "1.2.1";
   };
   rack = {
-    groups = ["default"];
-    platforms = [];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "158hbn7rlc3czp2vivvam44dv6vmzz16qrh5dbzhfxbfsgiyrqw1";
+      sha256 = "1pcgv8dv4vkaczzlix8q3j68capwhk420cddzijwqgi2qb4lm1zm";
       type = "gem";
     };
-    version = "2.0.5";
+    version = "2.0.6";
   };
   ruby-enum = {
     dependencies = ["i18n"];

From 8d81cf62019476f35dcfe625d413e216c9be3c40 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Mon, 5 Nov 2018 15:14:36 +0100
Subject: [PATCH 0571/1129] ghc: add new version 8.6.2

---
 pkgs/development/compilers/ghc/8.6.2.nix | 232 +++++++++++++++++++++++
 pkgs/top-level/haskell-packages.nix      |  10 +
 2 files changed, 242 insertions(+)
 create mode 100644 pkgs/development/compilers/ghc/8.6.2.nix

diff --git a/pkgs/development/compilers/ghc/8.6.2.nix b/pkgs/development/compilers/ghc/8.6.2.nix
new file mode 100644
index 000000000000..6470f7b02957
--- /dev/null
+++ b/pkgs/development/compilers/ghc/8.6.2.nix
@@ -0,0 +1,232 @@
+{ stdenv, targetPackages
+
+# build-tools
+, bootPkgs
+, autoconf, automake, coreutils, fetchurl, fetchpatch, perl, python3, m4
+
+, libiconv ? null, ncurses
+
+, useLLVM ? !stdenv.targetPlatform.isx86 || (stdenv.targetPlatform.isMusl && stdenv.hostPlatform != stdenv.targetPlatform)
+, # LLVM is conceptually a run-time-only depedendency, but for
+  # non-x86, we need LLVM to bootstrap later stages, so it becomes a
+  # build-time dependency too.
+  buildLlvmPackages, llvmPackages
+
+, # If enabled, GHC will be built with the GPL-free but slower integer-simple
+  # library instead of the faster but GPLed integer-gmp library.
+  enableIntegerSimple ? !(stdenv.lib.any (stdenv.lib.meta.platformMatch stdenv.hostPlatform) gmp.meta.platforms), gmp
+
+, # If enabled, use -fPIC when compiling static libs.
+  enableRelocatedStaticLibs ? stdenv.targetPlatform != stdenv.hostPlatform
+
+, # Whether to build dynamic libs for the standard library (on the target
+  # platform). Static libs are always built.
+  enableShared ? !stdenv.targetPlatform.isWindows && !stdenv.targetPlatform.useiOSPrebuilt
+
+, # Whetherto build terminfo.
+  enableTerminfo ? !stdenv.targetPlatform.isWindows
+
+, # What flavour to build. An empty string indicates no
+  # specific flavour and falls back to ghc default values.
+  ghcFlavour ? stdenv.lib.optionalString (stdenv.targetPlatform != stdenv.hostPlatform) "perf-cross"
+}:
+
+assert !enableIntegerSimple -> gmp != null;
+
+let
+  inherit (stdenv) buildPlatform hostPlatform targetPlatform;
+
+  inherit (bootPkgs) ghc;
+
+  # TODO(@Ericson2314) Make unconditional
+  targetPrefix = stdenv.lib.optionalString
+    (targetPlatform != hostPlatform)
+    "${targetPlatform.config}-";
+
+  buildMK = ''
+    BuildFlavour = ${ghcFlavour}
+    ifneq \"\$(BuildFlavour)\" \"\"
+    include mk/flavours/\$(BuildFlavour).mk
+    endif
+    DYNAMIC_GHC_PROGRAMS = ${if enableShared then "YES" else "NO"}
+    INTEGER_LIBRARY = ${if enableIntegerSimple then "integer-simple" else "integer-gmp"}
+  '' + stdenv.lib.optionalString (targetPlatform != hostPlatform) ''
+    Stage1Only = ${if targetPlatform.system == hostPlatform.system then "NO" else "YES"}
+    CrossCompilePrefix = ${targetPrefix}
+    HADDOCK_DOCS = NO
+    BUILD_SPHINX_HTML = NO
+    BUILD_SPHINX_PDF = NO
+  '' + stdenv.lib.optionalString enableRelocatedStaticLibs ''
+    GhcLibHcOpts += -fPIC
+    GhcRtsHcOpts += -fPIC
+  '' + stdenv.lib.optionalString targetPlatform.useAndroidPrebuilt ''
+    EXTRA_CC_OPTS += -std=gnu99
+  '';
+
+  # Splicer will pull out correct variations
+  libDeps = platform: stdenv.lib.optional enableTerminfo [ ncurses ]
+    ++ stdenv.lib.optional (!enableIntegerSimple) gmp
+    ++ stdenv.lib.optional (platform.libc != "glibc" && !targetPlatform.isWindows) libiconv;
+
+  toolsForTarget =
+    if hostPlatform == buildPlatform then
+      [ targetPackages.stdenv.cc ] ++ stdenv.lib.optional useLLVM llvmPackages.llvm
+    else assert targetPlatform == hostPlatform; # build != host == target
+      [ stdenv.cc ] ++ stdenv.lib.optional useLLVM buildLlvmPackages.llvm;
+
+  targetCC = builtins.head toolsForTarget;
+
+in
+stdenv.mkDerivation (rec {
+  version = "8.6.2";
+  name = "${targetPrefix}ghc-${version}";
+
+  src = fetchurl {
+    url = "https://downloads.haskell.org/~ghc/${version}/ghc-${version}-src.tar.xz";
+    sha256 = "1mbn3n2ynmpfpb7jfnhpzzli31qqxqyi8ws71blws3i846fq3ana";
+  };
+
+  enableParallelBuilding = true;
+
+  outputs = [ "out" "doc" ];
+
+  patches = [(fetchpatch rec { # https://phabricator.haskell.org/D5123
+    url = "http://tarballs.nixos.org/sha256/${sha256}";
+    name = "D5123.diff";
+    sha256 = "0nhqwdamf2y4gbwqxcgjxs0kqx23w9gv5kj0zv6450dq19rji82n";
+  })];
+
+  postPatch = "patchShebangs .";
+
+  # GHC is a bit confused on its cross terminology.
+  preConfigure = ''
+    for env in $(env | grep '^TARGET_' | sed -E 's|\+?=.*||'); do
+      export "''${env#TARGET_}=''${!env}"
+    done
+    # GHC is a bit confused on its cross terminology, as these would normally be
+    # the *host* tools.
+    export CC="${targetCC}/bin/${targetCC.targetPrefix}cc"
+    export CXX="${targetCC}/bin/${targetCC.targetPrefix}cxx"
+    # Use gold to work around https://sourceware.org/bugzilla/show_bug.cgi?id=16177
+    export LD="${targetCC.bintools}/bin/${targetCC.bintools.targetPrefix}ld${stdenv.lib.optionalString targetPlatform.isAarch32 ".gold"}"
+    export AS="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}as"
+    export AR="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ar"
+    export NM="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}nm"
+    export RANLIB="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}ranlib"
+    export READELF="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}readelf"
+    export STRIP="${targetCC.bintools.bintools}/bin/${targetCC.bintools.targetPrefix}strip"
+
+    echo -n "${buildMK}" > mk/build.mk
+    sed -i -e 's|-isysroot /Developer/SDKs/MacOSX10.5.sdk||' configure
+  '' + stdenv.lib.optionalString (!stdenv.isDarwin) ''
+    export NIX_LDFLAGS+=" -rpath $out/lib/ghc-${version}"
+  '' + stdenv.lib.optionalString stdenv.isDarwin ''
+    export NIX_LDFLAGS+=" -no_dtrace_dof"
+  '' + stdenv.lib.optionalString targetPlatform.useAndroidPrebuilt ''
+    sed -i -e '5i ,("armv7a-unknown-linux-androideabi", ("e-m:e-p:32:32-i64:64-v128:64:128-a:0:32-n32-S64", "cortex-a8", ""))' llvm-targets
+  '' + stdenv.lib.optionalString targetPlatform.isMusl ''
+      echo "patching llvm-targets for musl targets..."
+      echo "Cloning these existing '*-linux-gnu*' targets:"
+      grep linux-gnu llvm-targets | sed 's/^/  /'
+      echo "(go go gadget sed)"
+      sed -i 's,\(^.*linux-\)gnu\(.*\)$,\0\n\1musl\2,' llvm-targets
+      echo "llvm-targets now contains these '*-linux-musl*' targets:"
+      grep linux-musl llvm-targets | sed 's/^/  /'
+
+      echo "And now patching to preserve '-musleabi' as done with '-gnueabi'"
+      # (aclocal.m4 is actual source, but patch configure as well since we don't re-gen)
+      for x in configure aclocal.m4; do
+        substituteInPlace $x \
+          --replace '*-android*|*-gnueabi*)' \
+                    '*-android*|*-gnueabi*|*-musleabi*)'
+      done
+  '';
+
+  # TODO(@Ericson2314): Always pass "--target" and always prefix.
+  configurePlatforms = [ "build" "host" ]
+    ++ stdenv.lib.optional (targetPlatform != hostPlatform) "target";
+  # `--with` flags for libraries needed for RTS linker
+  configureFlags = [
+    "--datadir=$doc/share/doc/ghc"
+    "--with-curses-includes=${ncurses.dev}/include" "--with-curses-libraries=${ncurses.out}/lib"
+  ] ++ stdenv.lib.optional (targetPlatform == hostPlatform && !enableIntegerSimple) [
+    "--with-gmp-includes=${targetPackages.gmp.dev}/include" "--with-gmp-libraries=${targetPackages.gmp.out}/lib"
+  ] ++ stdenv.lib.optional (targetPlatform == hostPlatform && hostPlatform.libc != "glibc" && !targetPlatform.isWindows) [
+    "--with-iconv-includes=${libiconv}/include" "--with-iconv-libraries=${libiconv}/lib"
+  ] ++ stdenv.lib.optionals (targetPlatform != hostPlatform) [
+    "--enable-bootstrap-with-devel-snapshot"
+  ] ++ stdenv.lib.optionals (targetPlatform.isAarch32) [
+    "CFLAGS=-fuse-ld=gold"
+    "CONF_GCC_LINKER_OPTS_STAGE1=-fuse-ld=gold"
+    "CONF_GCC_LINKER_OPTS_STAGE2=-fuse-ld=gold"
+  ] ++ stdenv.lib.optionals (targetPlatform.isDarwin && targetPlatform.isAarch64) [
+    # fix for iOS: https://www.reddit.com/r/haskell/comments/4ttdz1/building_an_osxi386_to_iosarm64_cross_compiler/d5qvd67/
+    "--disable-large-address-space"
+  ];
+
+  # Make sure we never relax`$PATH` and hooks support for compatability.
+  strictDeps = true;
+
+  nativeBuildInputs = [
+    perl autoconf automake m4 python3
+    ghc bootPkgs.alex bootPkgs.happy bootPkgs.hscolour
+  ];
+
+  # For building runtime libs
+  depsBuildTarget = toolsForTarget;
+
+  buildInputs = libDeps hostPlatform;
+
+  propagatedBuildInputs = [ targetPackages.stdenv.cc ]
+    ++ stdenv.lib.optional useLLVM llvmPackages.llvm;
+
+  depsTargetTarget = map stdenv.lib.getDev (libDeps targetPlatform);
+  depsTargetTargetPropagated = map (stdenv.lib.getOutput "out") (libDeps targetPlatform);
+
+  # required, because otherwise all symbols from HSffi.o are stripped, and
+  # that in turn causes GHCi to abort
+  stripDebugFlags = [ "-S" ] ++ stdenv.lib.optional (!targetPlatform.isDarwin) "--keep-file-symbols";
+
+  checkTarget = "test";
+
+  hardeningDisable = [ "format" ];
+
+  postInstall = ''
+    for bin in "$out"/lib/${name}/bin/*; do
+      isELF "$bin" || continue
+      paxmark m "$bin"
+    done
+
+    # Install the bash completion file.
+    install -D -m 444 utils/completion/ghc.bash $out/share/bash-completion/completions/${targetPrefix}ghc
+
+    # Patch scripts to include "readelf" and "cat" in $PATH.
+    for i in "$out/bin/"*; do
+      test ! -h $i || continue
+      egrep --quiet '^#!' <(head -n 1 $i) || continue
+      sed -i -e '2i export PATH="$PATH:${stdenv.lib.makeBinPath [ targetPackages.stdenv.cc.bintools coreutils ]}"' $i
+    done
+  '';
+
+  passthru = {
+    inherit bootPkgs targetPrefix;
+
+    inherit llvmPackages;
+    inherit enableShared;
+
+    # Our Cabal compiler name
+    haskellCompilerName = "ghc-8.6.2";
+  };
+
+  meta = {
+    homepage = http://haskell.org/ghc;
+    description = "The Glasgow Haskell Compiler";
+    maintainers = with stdenv.lib.maintainers; [ marcweber andres peti ];
+    inherit (ghc.meta) license platforms;
+  };
+
+} // stdenv.lib.optionalAttrs targetPlatform.useAndroidPrebuilt {
+  dontStrip = true;
+  dontPatchELF = true;
+  noAuditTmpdir = true;
+})
diff --git a/pkgs/top-level/haskell-packages.nix b/pkgs/top-level/haskell-packages.nix
index 87adff4bf133..ebf1d264f590 100644
--- a/pkgs/top-level/haskell-packages.nix
+++ b/pkgs/top-level/haskell-packages.nix
@@ -62,6 +62,11 @@ in {
       buildLlvmPackages = buildPackages.llvmPackages_6;
       llvmPackages = pkgs.llvmPackages_6;
     };
+    ghc862 = callPackage ../development/compilers/ghc/8.6.2.nix {
+      bootPkgs = packages.ghc822;
+      buildLlvmPackages = buildPackages.llvmPackages_6;
+      llvmPackages = pkgs.llvmPackages_6;
+    };
     ghcHEAD = callPackage ../development/compilers/ghc/head.nix {
       bootPkgs = packages.ghc821Binary;
       buildLlvmPackages = buildPackages.llvmPackages_5;
@@ -129,6 +134,11 @@ in {
       ghc = bh.compiler.ghc861;
       compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-8.6.x.nix { };
     };
+    ghc862 = callPackage ../development/haskell-modules {
+      buildHaskellPackages = bh.packages.ghc862;
+      ghc = bh.compiler.ghc862;
+      compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-8.6.x.nix { };
+    };
     ghcHEAD = callPackage ../development/haskell-modules {
       buildHaskellPackages = bh.packages.ghcHEAD;
       ghc = bh.compiler.ghcHEAD;

From 0699f9ef07ef6a858beca46ecab32a010db25844 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Mon, 5 Nov 2018 17:10:18 +0100
Subject: [PATCH 0572/1129] LTS Haskell 12.17

---
 .../configuration-hackage2nix.yaml            | 31 ++++++++++---------
 1 file changed, 16 insertions(+), 15 deletions(-)

diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
index 0a2770cc4c01..97f2955d3a9e 100644
--- a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
+++ b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
@@ -45,7 +45,7 @@ default-package-overrides:
   - base-compat-batteries ==0.10.1
   # Newer versions don't work in LTS-12.x
   - cassava-megaparsec < 2
-  # LTS Haskell 12.16
+  # LTS Haskell 12.17
   - abstract-deque ==0.3
   - abstract-deque-tests ==0.3
   - abstract-par ==0.3.3
@@ -73,7 +73,7 @@ default-package-overrides:
   - aeson-typescript ==0.1.1.0
   - aeson-utils ==0.3.0.2
   - aeson-yak ==0.1.1.3
-  - Agda ==2.5.4.1
+  - Agda ==2.5.4.2
   - al ==0.1.4.2
   - alarmclock ==0.5.0.2
   - alerts ==0.1.0.0
@@ -731,8 +731,8 @@ default-package-overrides:
   - fileplow ==0.1.0.0
   - filter-logger ==0.6.0.0
   - filtrable ==0.1.1.0
-  - Fin ==0.2.6.0
   - fin ==0.0.1
+  - Fin ==0.2.6.0
   - FindBin ==0.0.5
   - find-clumpiness ==0.2.3.1
   - fingertree ==0.1.4.1
@@ -842,9 +842,9 @@ default-package-overrides:
   - gi-glib ==2.0.17
   - gi-gobject ==2.0.16
   - gi-gtk ==3.0.25
-  - gi-gtk-hs ==0.3.6.2
+  - gi-gtk-hs ==0.3.6.3
   - gi-gtksource ==3.0.16
-  - gi-javascriptcore ==4.0.15
+  - gi-javascriptcore ==4.0.16
   - gio ==0.13.5.0
   - gi-pango ==1.0.16
   - giphy-api ==0.6.0.1
@@ -1056,7 +1056,7 @@ default-package-overrides:
   - html-entity-map ==0.1.0.0
   - htoml ==1.0.0.3
   - HTTP ==4000.3.12
-  - http2 ==1.6.3
+  - http2 ==1.6.4
   - http-api-data ==0.3.8.1
   - http-client ==0.5.13.1
   - http-client-openssl ==0.2.2.0
@@ -1091,7 +1091,7 @@ default-package-overrides:
   - hw-mquery ==0.1.0.1
   - hworker ==0.1.0.1
   - hw-parser ==0.0.0.3
-  - hw-prim ==0.6.2.17
+  - hw-prim ==0.6.2.18
   - hw-rankselect ==0.10.0.3
   - hw-rankselect-base ==0.3.2.1
   - hw-string-parse ==0.0.0.4
@@ -1448,6 +1448,7 @@ default-package-overrides:
   - network-anonymous-i2p ==0.10.0
   - network-anonymous-tor ==0.11.0
   - network-attoparsec ==0.12.2
+  - network-byte-order ==0.0.0.0
   - network-conduit-tls ==1.3.2
   - network-house ==0.1.0.2
   - network-info ==0.2.0.10
@@ -1787,12 +1788,12 @@ default-package-overrides:
   - sample-frame ==0.0.3
   - sample-frame-np ==0.0.4.1
   - sampling ==0.3.3
-  - sandi ==0.4.2
+  - sandi ==0.4.3
   - sandman ==0.2.0.1
   - say ==0.1.0.1
   - sbp ==2.3.17
-  - scalendar ==1.2.0
   - SCalendar ==1.1.0
+  - scalendar ==1.2.0
   - scalpel ==0.5.1
   - scalpel-core ==0.5.1
   - scanner ==0.2
@@ -1877,11 +1878,11 @@ default-package-overrides:
   - siggy-chardust ==1.0.0
   - signal ==0.1.0.4
   - silently ==1.2.5
-  - simple-cmd ==0.1.1
+  - simple-cmd ==0.1.2
   - simple-reflect ==0.3.3
   - simple-sendfile ==0.2.27
   - simplest-sqlite ==0.1.0.0
-  - simple-vec3 ==0.4.0.8
+  - simple-vec3 ==0.4.0.9
   - since ==0.0.0
   - singleton-bool ==0.1.4
   - singleton-nats ==0.4.2
@@ -2212,7 +2213,7 @@ default-package-overrides:
   - vec ==0.1
   - vector ==0.12.0.1
   - vector-algorithms ==0.7.0.4
-  - vector-binary-instances ==0.2.5
+  - vector-binary-instances ==0.2.5.1
   - vector-buffer ==0.4.1
   - vector-builder ==0.3.6
   - vector-bytes-instances ==0.1.1
@@ -2307,10 +2308,10 @@ default-package-overrides:
   - X11 ==1.9
   - X11-xft ==0.3.1
   - x11-xim ==0.0.9.0
-  - x509 ==1.7.4
-  - x509-store ==1.6.6
+  - x509 ==1.7.5
+  - x509-store ==1.6.7
   - x509-system ==1.6.6
-  - x509-validation ==1.6.10
+  - x509-validation ==1.6.11
   - Xauth ==0.1
   - xdg-basedir ==0.2.2
   - xeno ==0.3.4

From f3900c0617e96a77eef95cfc4e5e39206f29a2bc Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Mon, 5 Nov 2018 17:11:54 +0100
Subject: [PATCH 0573/1129] hackage-packages.nix: automatic Haskell package set
 update

This update was generated by hackage2nix v2.11.1-3-gc8d18e2 from Hackage revision
https://github.com/commercialhaskell/all-cabal-hashes/commit/a1470d397f70352325440741b8a007ff8446aa53.
---
 .../haskell-modules/hackage-packages.nix      | 452 +++++-------------
 1 file changed, 131 insertions(+), 321 deletions(-)

diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix
index 7fd4df278f14..a6966e9558b3 100644
--- a/pkgs/development/haskell-modules/hackage-packages.nix
+++ b/pkgs/development/haskell-modules/hackage-packages.nix
@@ -724,49 +724,6 @@ self: {
      }) {};
 
   "Agda" = callPackage
-    ({ mkDerivation, alex, array, async, base, binary, blaze-html
-     , boxes, bytestring, Cabal, containers, cpphs, data-hash, deepseq
-     , directory, EdisonCore, edit-distance, emacs, equivalence
-     , filemanip, filepath, geniplate-mirror, gitrev, happy, hashable
-     , hashtables, haskeline, ieee754, mtl, murmur-hash, pretty, process
-     , regex-tdfa, stm, strict, template-haskell, text, time
-     , transformers, unordered-containers, uri-encode, zlib
-     }:
-     mkDerivation {
-       pname = "Agda";
-       version = "2.5.4.1";
-       sha256 = "0bxpibsk98n9xp42d92ma5vj2fam8rsnl61fbhr3askfjdvalnbp";
-       isLibrary = true;
-       isExecutable = true;
-       enableSeparateDataOutput = true;
-       setupHaskellDepends = [ base Cabal filemanip filepath process ];
-       libraryHaskellDepends = [
-         array async base binary blaze-html boxes bytestring containers
-         data-hash deepseq directory EdisonCore edit-distance equivalence
-         filepath geniplate-mirror gitrev hashable hashtables haskeline
-         ieee754 mtl murmur-hash pretty process regex-tdfa stm strict
-         template-haskell text time transformers unordered-containers
-         uri-encode zlib
-       ];
-       libraryToolDepends = [ alex cpphs happy ];
-       executableHaskellDepends = [ base directory filepath process ];
-       executableToolDepends = [ emacs ];
-       postInstall = ''
-         files=("$data/share/ghc-"*"/"*"-ghc-"*"/Agda-"*"/lib/prim/Agda/"{Primitive.agda,Builtin"/"*.agda})
-         for f in "''${files[@]}" ; do
-           $out/bin/agda $f
-         done
-         for f in "''${files[@]}" ; do
-           $out/bin/agda -c --no-main $f
-         done
-         $out/bin/agda-mode compile
-       '';
-       description = "A dependently typed functional programming language and proof assistant";
-       license = "unknown";
-       maintainers = with stdenv.lib.maintainers; [ abbradar ];
-     }) {inherit (pkgs) emacs;};
-
-  "Agda_2_5_4_2" = callPackage
     ({ mkDerivation, alex, array, async, base, binary, blaze-html
      , boxes, bytestring, Cabal, containers, data-hash, deepseq
      , directory, EdisonCore, edit-distance, emacs, equivalence
@@ -806,7 +763,6 @@ self: {
        '';
        description = "A dependently typed functional programming language and proof assistant";
        license = "unknown";
-       hydraPlatforms = stdenv.lib.platforms.none;
        maintainers = with stdenv.lib.maintainers; [ abbradar ];
      }) {inherit (pkgs) emacs;};
 
@@ -17300,6 +17256,8 @@ self: {
        pname = "Stack";
        version = "0.3.2";
        sha256 = "1rap4xyldzwj26r8mbvzkyy9021q8h06pz8cyd061vyslrl7p89b";
+       revision = "1";
+       editedCabalFile = "1ngyrylqmc2fc088d49pn41nlps3mqjimh0y8wc6nmpkay5pj0m8";
        libraryHaskellDepends = [ base nats stm ];
        description = "Stack data structure";
        license = stdenv.lib.licenses.bsd3;
@@ -30356,6 +30314,25 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "atomic-write_0_2_0_6" = callPackage
+    ({ mkDerivation, base, bytestring, directory, filepath, hspec
+     , temporary, text, unix-compat
+     }:
+     mkDerivation {
+       pname = "atomic-write";
+       version = "0.2.0.6";
+       sha256 = "1xs3shwnlj8hmnm3q6jc8nv78z0481i5n4hrqqdmbpx8grvlnqyl";
+       libraryHaskellDepends = [
+         base bytestring directory filepath temporary text unix-compat
+       ];
+       testHaskellDepends = [
+         base bytestring filepath hspec temporary text unix-compat
+       ];
+       description = "Atomically write to a file";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "atomo" = callPackage
     ({ mkDerivation, array, base, bytestring, containers, directory
      , filepath, hashable, haskeline, hint, mtl, parsec, pretty
@@ -34332,6 +34309,29 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "bencodex" = callPackage
+    ({ mkDerivation, attoparsec, base, base64-bytestring, bytestring
+     , containers, file-embed, filepath, hashable, hlint, hspec
+     , hspec-attoparsec, hspec-discover, HsYAML, text
+     , unordered-containers
+     }:
+     mkDerivation {
+       pname = "bencodex";
+       version = "1.0.0";
+       sha256 = "1ny60qg63kyi12rlk8spc6db40zq3laqfw0k89s0jvnkjlksdyj8";
+       libraryHaskellDepends = [
+         attoparsec base bytestring hashable text unordered-containers
+       ];
+       testHaskellDepends = [
+         base base64-bytestring bytestring containers file-embed filepath
+         hlint hspec hspec-attoparsec hspec-discover HsYAML text
+         unordered-containers
+       ];
+       testToolDepends = [ hspec-discover ];
+       description = "Bencodex reader/writer for Haskell";
+       license = stdenv.lib.licenses.gpl3;
+     }) {};
+
   "bencoding" = callPackage
     ({ mkDerivation, AttoBencode, attoparsec, base, bencode, bytestring
      , containers, criterion, deepseq, ghc-prim, hspec, integer-gmp, mtl
@@ -68994,18 +68994,19 @@ self: {
      }) {eibclient = null;};
 
   "eigen" = callPackage
-    ({ mkDerivation, base, binary, bytestring, mtl, primitive
-     , transformers, vector
+    ({ mkDerivation, base, binary, bytestring, constraints, ghc-prim
+     , mtl, primitive, transformers, vector
      }:
      mkDerivation {
        pname = "eigen";
-       version = "3.3.4.1";
-       sha256 = "0kpbnl5yrsp9923al5g9x48yf88m4vsdryq69g8fmlh0wdqkdapa";
+       version = "3.3.4.2";
+       sha256 = "0l88bzp6f5bs5lpcav1c0lg2dc59rfdka2d6dx3c6gzbj1jmf5iz";
        libraryHaskellDepends = [
-         base binary bytestring primitive transformers vector
+         base binary bytestring constraints ghc-prim primitive transformers
+         vector
        ];
        testHaskellDepends = [
-         base binary bytestring mtl primitive transformers vector
+         base binary bytestring ghc-prim mtl primitive transformers vector
        ];
        description = "Eigen C++ library (linear algebra: matrices, sparse matrices, vectors, numerical solvers)";
        license = stdenv.lib.licenses.bsd3;
@@ -73584,24 +73585,23 @@ self: {
   "extensible-effects-concurrent" = callPackage
     ({ mkDerivation, async, base, containers, data-default, deepseq
      , directory, enclosed-exceptions, extensible-effects, filepath
-     , HUnit, lens, logging-effect, monad-control, mtl, parallel
-     , process, QuickCheck, random, stm, tagged, tasty, tasty-discover
-     , tasty-hunit, time, transformers
+     , HUnit, lens, monad-control, mtl, parallel, process, QuickCheck
+     , stm, tasty, tasty-discover, tasty-hunit, time
      }:
      mkDerivation {
        pname = "extensible-effects-concurrent";
-       version = "0.9.0";
-       sha256 = "0y6rf1whjwhrzkjw70sayl95lf8b6dhn5l9pxhwp05gnz3ll81ka";
+       version = "0.9.2.2";
+       sha256 = "0zw8qvsiblsms9cpmwlg70ix7qlmpgxhm2jdp16j04rvl93zaykw";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
-         async base containers data-default deepseq directory
-         enclosed-exceptions extensible-effects filepath lens logging-effect
-         monad-control mtl parallel process QuickCheck random stm tagged
-         time transformers
+         async base containers data-default deepseq enclosed-exceptions
+         extensible-effects filepath lens monad-control mtl parallel process
+         QuickCheck stm time
        ];
        executableHaskellDepends = [
-         base data-default extensible-effects lens
+         base data-default deepseq directory extensible-effects filepath
+         lens
        ];
        testHaskellDepends = [
          base containers data-default deepseq extensible-effects HUnit lens
@@ -76740,8 +76740,8 @@ self: {
     ({ mkDerivation, base, random }:
      mkDerivation {
        pname = "fixedprec";
-       version = "0.2.2.1";
-       sha256 = "0s921nhkmdglmcwzyr048r04dswc6hz7kvh9p4lvd8i2mxq0szgi";
+       version = "0.2.2.2";
+       sha256 = "01ss9rzg2r4gii6f7771n4vdyg022skyws6ncc3l62xycgz153a7";
        libraryHaskellDepends = [ base random ];
        description = "A fixed-precision real number type";
        license = stdenv.lib.licenses.bsd3;
@@ -85288,23 +85288,6 @@ self: {
      }) {};
 
   "gi-gtk-hs" = callPackage
-    ({ mkDerivation, base, base-compat, containers, gi-gdk
-     , gi-gdkpixbuf, gi-glib, gi-gobject, gi-gtk, haskell-gi-base, mtl
-     , text, transformers
-     }:
-     mkDerivation {
-       pname = "gi-gtk-hs";
-       version = "0.3.6.2";
-       sha256 = "04gksr27nqzx77c8kv2c94ysf1pz3nwhvnxvbz8h7cn4hzvzhb8z";
-       libraryHaskellDepends = [
-         base base-compat containers gi-gdk gi-gdkpixbuf gi-glib gi-gobject
-         gi-gtk haskell-gi-base mtl text transformers
-       ];
-       description = "A wrapper for gi-gtk, adding a few more idiomatic API parts on top";
-       license = stdenv.lib.licenses.lgpl21;
-     }) {};
-
-  "gi-gtk-hs_0_3_6_3" = callPackage
     ({ mkDerivation, base, base-compat, containers, gi-gdk
      , gi-gdkpixbuf, gi-glib, gi-gobject, gi-gtk, haskell-gi-base, mtl
      , text, transformers
@@ -85319,7 +85302,6 @@ self: {
        ];
        description = "A wrapper for gi-gtk, adding a few more idiomatic API parts on top";
        license = stdenv.lib.licenses.lgpl21;
-       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "gi-gtkosxapplication" = callPackage
@@ -85366,27 +85348,6 @@ self: {
      }) {gtksourceview3 = pkgs.gnome3.gtksourceview;};
 
   "gi-javascriptcore" = callPackage
-    ({ mkDerivation, base, bytestring, Cabal, containers, haskell-gi
-     , haskell-gi-base, haskell-gi-overloading, text, transformers
-     , webkitgtk
-     }:
-     mkDerivation {
-       pname = "gi-javascriptcore";
-       version = "4.0.15";
-       sha256 = "07dz5kisis93x0ywb207w8nv54bfdgsahq325dyvbfvlgkqrxsh3";
-       setupHaskellDepends = [ base Cabal haskell-gi ];
-       libraryHaskellDepends = [
-         base bytestring containers haskell-gi haskell-gi-base
-         haskell-gi-overloading text transformers
-       ];
-       libraryPkgconfigDepends = [ webkitgtk ];
-       doHaddock = false;
-       description = "JavaScriptCore bindings";
-       license = stdenv.lib.licenses.lgpl21;
-       hydraPlatforms = stdenv.lib.platforms.none;
-     }) {inherit (pkgs.gnome3) webkitgtk;};
-
-  "gi-javascriptcore_4_0_16" = callPackage
     ({ mkDerivation, base, bytestring, Cabal, containers, gi-glib
      , gi-gobject, haskell-gi, haskell-gi-base, haskell-gi-overloading
      , text, transformers, webkitgtk
@@ -85945,8 +85906,8 @@ self: {
      }:
      mkDerivation {
        pname = "git-annex";
-       version = "7.20181031";
-       sha256 = "02h3c77mdlr4c6l7c14ai0i2kq8c7pawvsf33my449b1srviazlm";
+       version = "7.20181105";
+       sha256 = "0jh49bfgsccrvhdgyp1xp5rj0vp9iz8kkmh1x5cmrsjajs8qdpw3";
        configureFlags = [
          "-fassistant" "-fcryptonite" "-fdbus" "-fdesktopnotify" "-fdns"
          "-ffeed" "-finotify" "-fpairing" "-fproduction" "-fquvi" "-f-s3"
@@ -100374,8 +100335,8 @@ self: {
      }:
      mkDerivation {
        pname = "haskoin-store";
-       version = "0.6.0";
-       sha256 = "1qzxx1rbwv792f96wcsqmbsshd6qf34fqj6byi17la51s900zr09";
+       version = "0.6.1";
+       sha256 = "0jgsf4f3qyq60dbyyni0d1cdphabf8ix4l0y1iiql5ii2fy50dw2";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -100978,8 +100939,8 @@ self: {
     ({ mkDerivation, base }:
      mkDerivation {
        pname = "haskus-utils-types";
-       version = "1.1";
-       sha256 = "1fihf61z5078l73a08fvm5qb67dr3yc32nhgakkldd0fbh7clyrz";
+       version = "1.2";
+       sha256 = "0q7i2z1l55x9pgf9bd5xng0bdx4v74356gayhdxws1gfmghgf7f0";
        libraryHaskellDepends = [ base ];
        description = "Haskus utility modules";
        license = stdenv.lib.licenses.bsd3;
@@ -100991,8 +100952,8 @@ self: {
      }:
      mkDerivation {
        pname = "haskus-utils-variant";
-       version = "2.0.3";
-       sha256 = "0yxlpznmc5yyv9ibx38f2slcj8r70qcz963j2fsbi5xr88ih7and";
+       version = "2.1.1";
+       sha256 = "1n8hhb4lv4d9xa0s9fzj6hhj2r22jqf9jrihck5y5nr5rvribfyk";
        libraryHaskellDepends = [
          base haskus-utils-data haskus-utils-types template-haskell
        ];
@@ -109881,14 +109842,14 @@ self: {
 
   "hpack-dhall" = callPackage
     ({ mkDerivation, aeson, aeson-pretty, base, bytestring, Cabal
-     , dhall, dhall-json, Diff, filepath, hpack, megaparsec, microlens
-     , optparse-applicative, prettyprinter, tasty, tasty-golden, text
-     , transformers, utf8-string, yaml
+     , dhall, dhall-json, Diff, directory, filepath, hpack, megaparsec
+     , microlens, optparse-applicative, prettyprinter, tasty
+     , tasty-golden, text, transformers, utf8-string, yaml
      }:
      mkDerivation {
        pname = "hpack-dhall";
-       version = "0.4.0";
-       sha256 = "04bjhfc5xqkvp58y28cifsq58l2rbc8xa7ywvzmk9hvw7acbixca";
+       version = "0.5.0";
+       sha256 = "0nqvcs9ch2knlllb0r0j0aqwab7h3yxh5iay377gyq8xc0m4l8w6";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -109902,7 +109863,7 @@ self: {
        ];
        testHaskellDepends = [
          aeson aeson-pretty base bytestring Cabal dhall dhall-json Diff
-         filepath hpack megaparsec microlens prettyprinter tasty
+         directory filepath hpack megaparsec microlens prettyprinter tasty
          tasty-golden text transformers utf8-string yaml
        ];
        description = "hpack's dhalling";
@@ -116569,36 +116530,6 @@ self: {
      }) {};
 
   "http2" = callPackage
-    ({ mkDerivation, aeson, aeson-pretty, array, base, bytestring
-     , bytestring-builder, case-insensitive, containers, criterion
-     , directory, doctest, filepath, Glob, hashtables, heaps, hex, hspec
-     , mwc-random, psqueues, stm, text, unordered-containers, vector
-     , word8
-     }:
-     mkDerivation {
-       pname = "http2";
-       version = "1.6.3";
-       sha256 = "0hww0rfsv6lqx62qzycbcqy5q6rh9k09qkyjkdm5m1sp1z50wqk1";
-       isLibrary = true;
-       isExecutable = true;
-       libraryHaskellDepends = [
-         array base bytestring bytestring-builder case-insensitive
-         containers psqueues stm
-       ];
-       testHaskellDepends = [
-         aeson aeson-pretty array base bytestring bytestring-builder
-         case-insensitive containers directory doctest filepath Glob hex
-         hspec psqueues stm text unordered-containers vector word8
-       ];
-       benchmarkHaskellDepends = [
-         array base bytestring case-insensitive containers criterion
-         hashtables heaps mwc-random psqueues stm
-       ];
-       description = "HTTP/2 library including frames, priority queues and HPACK";
-       license = stdenv.lib.licenses.bsd3;
-     }) {};
-
-  "http2_1_6_4" = callPackage
     ({ mkDerivation, aeson, aeson-pretty, array, base, bytestring
      , case-insensitive, containers, criterion, directory, doctest
      , filepath, Glob, heaps, hex, hspec, mwc-random, network-byte-order
@@ -116626,7 +116557,6 @@ self: {
        ];
        description = "HTTP/2 library including frames, priority queues and HPACK";
        license = stdenv.lib.licenses.bsd3;
-       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "http2-client" = callPackage
@@ -117914,29 +117844,6 @@ self: {
      }) {};
 
   "hw-prim" = callPackage
-    ({ mkDerivation, base, bytestring, criterion, directory, exceptions
-     , hedgehog, hspec, hw-hspec-hedgehog, mmap, QuickCheck, semigroups
-     , transformers, vector
-     }:
-     mkDerivation {
-       pname = "hw-prim";
-       version = "0.6.2.17";
-       sha256 = "184ymryvfj3s6bc3igahfyd8k9cqf59vmpb9g3afh8xpicpmmiv6";
-       libraryHaskellDepends = [
-         base bytestring mmap semigroups transformers vector
-       ];
-       testHaskellDepends = [
-         base bytestring directory exceptions hedgehog hspec
-         hw-hspec-hedgehog mmap QuickCheck semigroups transformers vector
-       ];
-       benchmarkHaskellDepends = [
-         base bytestring criterion mmap semigroups transformers vector
-       ];
-       description = "Primitive functions and data types";
-       license = stdenv.lib.licenses.bsd3;
-     }) {};
-
-  "hw-prim_0_6_2_18" = callPackage
     ({ mkDerivation, base, bytestring, criterion, directory, exceptions
      , hedgehog, hspec, hw-hspec-hedgehog, mmap, QuickCheck, semigroups
      , transformers, vector
@@ -117957,7 +117864,6 @@ self: {
        ];
        description = "Primitive functions and data types";
        license = stdenv.lib.licenses.bsd3;
-       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "hw-prim-bits" = callPackage
@@ -144435,8 +144341,8 @@ self: {
     ({ mkDerivation, base, ghc-typelits-knownnat }:
      mkDerivation {
        pname = "modular";
-       version = "0.1.0.0";
-       sha256 = "1md01c9rzw24nymllkabckv46l7076kac6c317h5jindsncm7b8i";
+       version = "0.1.0.8";
+       sha256 = "1igg7am4z1kfvpyp5a53rsqan5i209rp1s0z9xamqydx60ilc2s3";
        libraryHaskellDepends = [ base ghc-typelits-knownnat ];
        description = "Type-safe modular arithmetic";
        license = stdenv.lib.licenses.bsd3;
@@ -164545,10 +164451,8 @@ self: {
      }:
      mkDerivation {
        pname = "pixela";
-       version = "0.1.0.0";
-       sha256 = "02ab3n56j3y93wrwdj8rd3ff9zw9kskily1s9j2yq49zwpjnilpj";
-       revision = "3";
-       editedCabalFile = "0kndzh00saxdinyz5hbqkir9n578fz8db291nqynqpymw6lwkyc3";
+       version = "0.2.0.0";
+       sha256 = "1hwizaxgn6x61vdspn8l3yljjlsglilvlimlz32ngcl1bpdhxh9l";
        libraryHaskellDepends = [
          aeson base bytestring data-default http-client http-client-tls
          http-types split text unordered-containers uri-encode vector
@@ -183451,26 +183355,6 @@ self: {
      }) {};
 
   "sandi" = callPackage
-    ({ mkDerivation, base, bytestring, conduit, criterion, exceptions
-     , HUnit, stringsearch, tasty, tasty-hunit, tasty-quickcheck
-     , tasty-th
-     }:
-     mkDerivation {
-       pname = "sandi";
-       version = "0.4.2";
-       sha256 = "0dvkpk91n9kz2ha04rvp231ra9sgd1ilyc1qkzf9l03iir7zrh9b";
-       libraryHaskellDepends = [
-         base bytestring conduit exceptions stringsearch
-       ];
-       testHaskellDepends = [
-         base bytestring HUnit tasty tasty-hunit tasty-quickcheck tasty-th
-       ];
-       benchmarkHaskellDepends = [ base bytestring criterion ];
-       description = "Data encoding library";
-       license = stdenv.lib.licenses.bsd3;
-     }) {};
-
-  "sandi_0_4_3" = callPackage
     ({ mkDerivation, base, bytestring, conduit, criterion, exceptions
      , tasty, tasty-hunit, tasty-quickcheck, tasty-th
      }:
@@ -183485,7 +183369,6 @@ self: {
        benchmarkHaskellDepends = [ base bytestring criterion ];
        description = "Data encoding library";
        license = stdenv.lib.licenses.bsd3;
-       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "sandlib" = callPackage
@@ -186887,6 +186770,8 @@ self: {
        pname = "servant-auth";
        version = "0.3.2.0";
        sha256 = "12s1m7vqp0ka8nani4cnrb6fad2y5mxji95bba2b6b07ih8xbd3v";
+       revision = "1";
+       editedCabalFile = "10ss4v45lclf5n0k6rch22zzs59v7p5ppd04dbc97pqxiygpbnd9";
        libraryHaskellDepends = [ base ];
        description = "Authentication combinators for servant";
        license = stdenv.lib.licenses.bsd3;
@@ -186903,6 +186788,8 @@ self: {
        pname = "servant-auth-client";
        version = "0.3.3.0";
        sha256 = "1pxkwpg1in3anamfvrp8gd7iihng0ikhl4k7ymz5d75ma1qwa2j9";
+       revision = "1";
+       editedCabalFile = "0jd1frgvghd9zp0rzzar9xxvj6qwg1l7f0zv7977rf6v930fqhw9";
        libraryHaskellDepends = [
          base bytestring containers servant servant-auth servant-client-core
          text
@@ -186957,8 +186844,8 @@ self: {
        pname = "servant-auth-docs";
        version = "0.2.10.0";
        sha256 = "0j1ynnrb6plrhpb2vzs2p7a9jb41llp0j1jwgap7hjhkwhyc7wxd";
-       revision = "1";
-       editedCabalFile = "0rg38ibrw110c3dllqda7badbf6y89g2ilqybkzipyprwkg8s69x";
+       revision = "2";
+       editedCabalFile = "0309a6pc8jj24xwqmzj1yslgij9g212hnaqh2qkcvlm6k6riffil";
        setupHaskellDepends = [ base Cabal cabal-doctest ];
        libraryHaskellDepends = [
          base lens servant servant-auth servant-docs text
@@ -187040,7 +186927,7 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
-  "servant-auth-server_0_4_1_0" = callPackage
+  "servant-auth-server_0_4_2_0" = callPackage
     ({ mkDerivation, aeson, base, base64-bytestring, blaze-builder
      , bytestring, bytestring-conversion, case-insensitive, cookie
      , crypto-api, data-default-class, entropy, hspec, hspec-discover
@@ -187051,8 +186938,8 @@ self: {
      }:
      mkDerivation {
        pname = "servant-auth-server";
-       version = "0.4.1.0";
-       sha256 = "1fxh50fjrdi5j88qs2vsrflqdwq3pc8s5h424nhjrpc24w277bqi";
+       version = "0.4.2.0";
+       sha256 = "000szizds1c8amxm7gl75gpwrlj38gv665bhp59d35wcq03na4ap";
        libraryHaskellDepends = [
          aeson base base64-bytestring blaze-builder bytestring
          bytestring-conversion case-insensitive cookie crypto-api
@@ -187079,6 +186966,8 @@ self: {
        pname = "servant-auth-swagger";
        version = "0.2.10.0";
        sha256 = "04ndbbhdmpgb8yshki6q2j46a5q8fzvlb4nn8x8gv0mqkriq79sh";
+       revision = "1";
+       editedCabalFile = "105rniz4cmmwr0ynyv75s4ap1fgfwxy2k5mvvj66gwpvzmj55cnx";
        libraryHaskellDepends = [
          base lens servant servant-auth servant-swagger swagger2 text
        ];
@@ -191419,17 +191308,6 @@ self: {
      }) {};
 
   "simple-cmd" = callPackage
-    ({ mkDerivation, base, directory, filepath, process }:
-     mkDerivation {
-       pname = "simple-cmd";
-       version = "0.1.1";
-       sha256 = "0y9ga7m3zykrmgfzys6g7k1z79spp2319ln4sayw8i0abpwh63m9";
-       libraryHaskellDepends = [ base directory filepath process ];
-       description = "Simple String-based process commands";
-       license = stdenv.lib.licenses.bsd3;
-     }) {};
-
-  "simple-cmd_0_1_2" = callPackage
     ({ mkDerivation, base, directory, filepath, process }:
      mkDerivation {
        pname = "simple-cmd";
@@ -191438,7 +191316,6 @@ self: {
        libraryHaskellDepends = [ base directory filepath process ];
        description = "Simple String-based process commands";
        license = stdenv.lib.licenses.bsd3;
-       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "simple-conduit" = callPackage
@@ -192060,24 +191937,6 @@ self: {
      }) {};
 
   "simple-vec3" = callPackage
-    ({ mkDerivation, base, criterion, doctest, doctest-driver-gen
-     , QuickCheck, tasty, tasty-quickcheck, vector
-     }:
-     mkDerivation {
-       pname = "simple-vec3";
-       version = "0.4.0.8";
-       sha256 = "0jikq60ixk21gb7j3rayxqha73m9vn4n8kz4799rcw5qiii7rr4a";
-       libraryHaskellDepends = [ base QuickCheck vector ];
-       testHaskellDepends = [
-         base doctest doctest-driver-gen tasty tasty-quickcheck
-       ];
-       benchmarkHaskellDepends = [ base criterion vector ];
-       description = "Three-dimensional vectors of doubles with basic operations";
-       license = stdenv.lib.licenses.bsd3;
-       hydraPlatforms = stdenv.lib.platforms.none;
-     }) {};
-
-  "simple-vec3_0_4_0_9" = callPackage
     ({ mkDerivation, base, criterion, doctest, doctest-driver-gen
      , QuickCheck, tasty, tasty-quickcheck, vector
      }:
@@ -193109,6 +192968,30 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "slack-web_0_2_0_8" = callPackage
+    ({ mkDerivation, aeson, base, containers, errors, hspec
+     , http-api-data, http-client, http-client-tls, megaparsec, mtl
+     , servant, servant-client, servant-client-core, text, time
+     , transformers
+     }:
+     mkDerivation {
+       pname = "slack-web";
+       version = "0.2.0.8";
+       sha256 = "00sm4sh8ik472l5hk1yifczppr6nxx9b68byilg0zwzy1c4mq9kg";
+       libraryHaskellDepends = [
+         aeson base containers errors http-api-data http-client
+         http-client-tls megaparsec mtl servant servant-client
+         servant-client-core text time transformers
+       ];
+       testHaskellDepends = [
+         aeson base containers errors hspec http-api-data megaparsec text
+         time
+       ];
+       description = "Bindings for the Slack web API";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "slate" = callPackage
     ({ mkDerivation, base, directory, filepath, htoml
      , optparse-applicative, process, string-conversions
@@ -200191,6 +200074,18 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "storable-complex_0_2_3_0" = callPackage
+    ({ mkDerivation, base, base-orphans }:
+     mkDerivation {
+       pname = "storable-complex";
+       version = "0.2.3.0";
+       sha256 = "0fnwbfmd5vsaaqvf9182qdcjrzcfjd1zhdyvjwzifbwvn6r9kx4s";
+       libraryHaskellDepends = [ base base-orphans ];
+       description = "Storable instance for Complex";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "storable-endian" = callPackage
     ({ mkDerivation, base, byteorder }:
      mkDerivation {
@@ -212655,8 +212550,8 @@ self: {
      }:
      mkDerivation {
        pname = "toodles";
-       version = "0.1.2";
-       sha256 = "0s4smdh8y308a6bwp21k070qc1xnzabab6hv2wrrmdkmmc36wfws";
+       version = "0.1.3";
+       sha256 = "09ph9jmhma211r16fyvib8fwv3jm8v526swjgwrzsl9c97xfpzjg";
        isLibrary = false;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -221178,23 +221073,6 @@ self: {
      }) {};
 
   "vector-binary-instances" = callPackage
-    ({ mkDerivation, base, binary, bytestring, criterion, deepseq
-     , tasty, tasty-quickcheck, vector
-     }:
-     mkDerivation {
-       pname = "vector-binary-instances";
-       version = "0.2.5";
-       sha256 = "0l9zj58a4sbpic1dc9if7iwv4rihya2bj4zb4qfna5fb3pf6plwc";
-       libraryHaskellDepends = [ base binary vector ];
-       testHaskellDepends = [ base binary tasty tasty-quickcheck vector ];
-       benchmarkHaskellDepends = [
-         base binary bytestring criterion deepseq vector
-       ];
-       description = "Instances of Data.Binary for vector";
-       license = stdenv.lib.licenses.bsd3;
-     }) {};
-
-  "vector-binary-instances_0_2_5_1" = callPackage
     ({ mkDerivation, base, binary, bytestring, deepseq, gauge, tasty
      , tasty-quickcheck, vector
      }:
@@ -221209,7 +221087,6 @@ self: {
        ];
        description = "Instances of Data.Binary for vector";
        license = stdenv.lib.licenses.bsd3;
-       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "vector-buffer" = callPackage
@@ -228283,29 +228160,6 @@ self: {
      }) {inherit (pkgs.xorg) libXi;};
 
   "x509" = callPackage
-    ({ mkDerivation, asn1-encoding, asn1-parse, asn1-types, base
-     , bytestring, containers, cryptonite, hourglass, memory, mtl, pem
-     , tasty, tasty-quickcheck
-     }:
-     mkDerivation {
-       pname = "x509";
-       version = "1.7.4";
-       sha256 = "1vm1ir0q7nxcyq65bmw7hbwlmf3frya077v9jikcrh8igg18m717";
-       revision = "1";
-       editedCabalFile = "0p9zzzj118n8ymacj6yp7nkf22d09mj31wnzc1alq26w2ybcrifz";
-       libraryHaskellDepends = [
-         asn1-encoding asn1-parse asn1-types base bytestring containers
-         cryptonite hourglass memory mtl pem
-       ];
-       testHaskellDepends = [
-         asn1-types base bytestring cryptonite hourglass mtl tasty
-         tasty-quickcheck
-       ];
-       description = "X509 reader and writer";
-       license = stdenv.lib.licenses.bsd3;
-     }) {};
-
-  "x509_1_7_5" = callPackage
     ({ mkDerivation, asn1-encoding, asn1-parse, asn1-types, base
      , bytestring, containers, cryptonite, hourglass, memory, mtl, pem
      , tasty, tasty-quickcheck
@@ -228324,28 +228178,9 @@ self: {
        ];
        description = "X509 reader and writer";
        license = stdenv.lib.licenses.bsd3;
-       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "x509-store" = callPackage
-    ({ mkDerivation, asn1-encoding, asn1-types, base, bytestring
-     , containers, cryptonite, directory, filepath, mtl, pem, tasty
-     , tasty-hunit, x509
-     }:
-     mkDerivation {
-       pname = "x509-store";
-       version = "1.6.6";
-       sha256 = "0dbndqmnmyixxc7308nyq3zlkhz9dff4rbcw2a49c77rbicny9va";
-       libraryHaskellDepends = [
-         asn1-encoding asn1-types base bytestring containers cryptonite
-         directory filepath mtl pem x509
-       ];
-       testHaskellDepends = [ base bytestring tasty tasty-hunit x509 ];
-       description = "X.509 collection accessing and storing methods";
-       license = stdenv.lib.licenses.bsd3;
-     }) {};
-
-  "x509-store_1_6_7" = callPackage
     ({ mkDerivation, asn1-encoding, asn1-types, base, bytestring
      , containers, cryptonite, directory, filepath, mtl, pem, tasty
      , tasty-hunit, x509
@@ -228361,7 +228196,6 @@ self: {
        testHaskellDepends = [ base bytestring tasty tasty-hunit x509 ];
        description = "X.509 collection accessing and storing methods";
        license = stdenv.lib.licenses.bsd3;
-       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "x509-system" = callPackage
@@ -228401,29 +228235,6 @@ self: {
      }) {};
 
   "x509-validation" = callPackage
-    ({ mkDerivation, asn1-encoding, asn1-types, base, bytestring
-     , containers, cryptonite, data-default-class, hourglass, memory
-     , mtl, pem, tasty, tasty-hunit, x509, x509-store
-     }:
-     mkDerivation {
-       pname = "x509-validation";
-       version = "1.6.10";
-       sha256 = "1ms51scawldgyfcim5a2qlgyn3rnrclyh205d6djaa1569vrs73n";
-       revision = "1";
-       editedCabalFile = "1isap8v1gh31q4pj3gn155ya8nd1da0a5a3cryqh4yhf0ivbwl0w";
-       libraryHaskellDepends = [
-         asn1-encoding asn1-types base bytestring containers cryptonite
-         data-default-class hourglass memory mtl pem x509 x509-store
-       ];
-       testHaskellDepends = [
-         asn1-encoding asn1-types base bytestring cryptonite
-         data-default-class hourglass tasty tasty-hunit x509 x509-store
-       ];
-       description = "X.509 Certificate and CRL validation";
-       license = stdenv.lib.licenses.bsd3;
-     }) {};
-
-  "x509-validation_1_6_11" = callPackage
     ({ mkDerivation, asn1-encoding, asn1-types, base, bytestring
      , containers, cryptonite, data-default-class, hourglass, memory
      , mtl, pem, tasty, tasty-hunit, x509, x509-store
@@ -228443,7 +228254,6 @@ self: {
        ];
        description = "X.509 Certificate and CRL validation";
        license = stdenv.lib.licenses.bsd3;
-       hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
   "x86-64bit" = callPackage
@@ -234224,8 +234034,8 @@ self: {
     ({ mkDerivation, base }:
      mkDerivation {
        pname = "yoda";
-       version = "0.1.0.0";
-       sha256 = "1p8zvxf63fbj2dpp3pa9awq1jc0makyka42j1aqsljfp08nx4pzn";
+       version = "0.1.3.0";
+       sha256 = "0qkg8aykr8whjrkwfnsds3bjbrb51r83rd60mpdwcs12zyqlpi0d";
        libraryHaskellDepends = [ base ];
        description = "Parser combinators for young padawans";
        license = stdenv.lib.licenses.bsd3;

From dde2ea4f37c8e404b8f5ef1114ce883741b9e5d8 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Tue, 6 Nov 2018 10:05:28 +0100
Subject: [PATCH 0574/1129] git-annex: update sha256 hash for new version
 7.20181105

---
 pkgs/development/haskell-modules/configuration-common.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix
index a34f510ccb9c..175551530026 100644
--- a/pkgs/development/haskell-modules/configuration-common.nix
+++ b/pkgs/development/haskell-modules/configuration-common.nix
@@ -86,7 +86,7 @@ self: super: {
       name = "git-annex-${super.git-annex.version}-src";
       url = "git://git-annex.branchable.com/";
       rev = "refs/tags/" + super.git-annex.version;
-      sha256 = "0mgmxcr36b86jh56my3vhp9y4cravi0hbppa463q3c21a1cmjc19";
+      sha256 = "0dnrihpdshrldais74jm5wjfw650i4va8znc1k2zq8gl9p4i8p39";
     };
   }).override {
     dbus = if pkgs.stdenv.isLinux then self.dbus else null;

From 28a6927637f71bf34dac19da5259f963b7ff5ddf Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Tue, 6 Nov 2018 11:11:10 +0100
Subject: [PATCH 0575/1129] radicale: 2.1.10 -> 2.1.11

---
 pkgs/servers/radicale/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/radicale/default.nix b/pkgs/servers/radicale/default.nix
index 1d8d97f4bde5..90e27b2907e5 100644
--- a/pkgs/servers/radicale/default.nix
+++ b/pkgs/servers/radicale/default.nix
@@ -2,14 +2,14 @@
 
 python3.pkgs.buildPythonApplication rec {
   pname = "Radicale";
-  version = "2.1.10";
+  version = "2.1.11";
 
   # No tests in PyPI tarball
   src = fetchFromGitHub {
     owner = "Kozea";
     repo = "Radicale";
     rev = version;
-    sha256 = "0ik9gvljxhmykkzzcv9kmkp4qjwgdrl9f7hp6300flx5kmqlcjb1";
+    sha256 = "1k32iy55lnyyp1r75clarhwdqvw6w8mxb5v0l5aysga07fg2mix4";
   };
 
   # We only want functional tests

From a7afcff928421b17c2c4b23ddd6e630c54f48854 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Tue, 6 Nov 2018 12:11:23 +0100
Subject: [PATCH 0576/1129] nixos: packagekit can no longer use "nix" default
 back-end

The code in question does not support Nix 2.0 yet.

Closes https://github.com/NixOS/nixpkgs/issues/49793.
---
 nixos/modules/services/misc/packagekit.nix | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/nixos/modules/services/misc/packagekit.nix b/nixos/modules/services/misc/packagekit.nix
index 2d1ff7bb4117..bce21e8acff3 100644
--- a/nixos/modules/services/misc/packagekit.nix
+++ b/nixos/modules/services/misc/packagekit.nix
@@ -6,11 +6,8 @@ let
 
   cfg = config.services.packagekit;
 
-  backend = "nix";
-
   packagekitConf = ''
 [Daemon]
-DefaultBackend=${backend}
 KeepCache=false
     '';
 

From faea8def191e6609525910216755e1d1311a0017 Mon Sep 17 00:00:00 2001
From: Vincent Laporte <Vincent.Laporte@gmail.com>
Date: Tue, 6 Nov 2018 12:10:09 +0000
Subject: [PATCH 0577/1129] coqPackages_8_5.fiat_HEAD: fix build

---
 pkgs/development/coq-modules/fiat/HEAD.nix | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/coq-modules/fiat/HEAD.nix b/pkgs/development/coq-modules/fiat/HEAD.nix
index a064064fd919..4abaec6528a9 100644
--- a/pkgs/development/coq-modules/fiat/HEAD.nix
+++ b/pkgs/development/coq-modules/fiat/HEAD.nix
@@ -11,8 +11,9 @@ stdenv.mkDerivation rec {
     sha256 = "0griqc675yylf9rvadlfsabz41qy5f5idya30p5rv6ysiakxya64";
   };
 
-  buildInputs = with coq.ocamlPackages; [ ocaml camlp5 python27 ];
-  propagatedBuildInputs = [ coq ];
+  buildInputs = [ coq python27 ] ++ (with coq.ocamlPackages; [ ocaml camlp5 ]);
+
+  prePatch = "patchShebangs etc/coq-scripts";
 
   doCheck = false;
 

From 36efe7b3aa5a652f296968c8e9ea85710f35d8b1 Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Tue, 6 Nov 2018 01:56:54 -0500
Subject: [PATCH 0578/1129] ocamlPackages.visitors: init at 20171124

---
 .../ocaml-modules/visitors/default.nix        | 23 +++++++++++++++++++
 pkgs/top-level/ocaml-packages.nix             |  2 ++
 2 files changed, 25 insertions(+)
 create mode 100644 pkgs/development/ocaml-modules/visitors/default.nix

diff --git a/pkgs/development/ocaml-modules/visitors/default.nix b/pkgs/development/ocaml-modules/visitors/default.nix
new file mode 100644
index 000000000000..506721f7bf5e
--- /dev/null
+++ b/pkgs/development/ocaml-modules/visitors/default.nix
@@ -0,0 +1,23 @@
+{ stdenv, fetchurl, ocaml, findlib, ocamlbuild, cppo, ppx_tools, ppx_deriving, result }:
+
+stdenv.mkDerivation {
+  name = "ocaml${ocaml.version}-visitors-20171124";
+
+  src = fetchurl {
+    url = http://gallium.inria.fr/~fpottier/visitors/visitors-20171124.tar.gz;
+    sha256 = "04047k2v0pgwcdkgw7jk4955pgil0nj2ji0zfhmlqrdbinyfqzac";
+  };
+
+  buildInputs = [ ocaml findlib ocamlbuild cppo ];
+  propagatedBuildInputs = [ ppx_tools ppx_deriving result ];
+
+  createFindlibDestdir = true;
+
+  meta = with stdenv.lib; {
+    homepage = https://gitlab.inria.fr/fpottier/visitors;
+    license = licenses.lgpl21;
+    description = "An OCaml syntax extension (technically, a ppx_deriving plugin) which generates object-oriented visitors for traversing and transforming data structures";
+    inherit (ocaml.meta) platforms;
+    maintainers = [ maintainers.marsam ];
+  };
+}
diff --git a/pkgs/top-level/ocaml-packages.nix b/pkgs/top-level/ocaml-packages.nix
index 2f6992e1c9a5..742f8cbaba56 100644
--- a/pkgs/top-level/ocaml-packages.nix
+++ b/pkgs/top-level/ocaml-packages.nix
@@ -735,6 +735,8 @@ let
 
     vg = callPackage ../development/ocaml-modules/vg { };
 
+    visitors = callPackage ../development/ocaml-modules/visitors { };
+
     wasm = callPackage ../development/ocaml-modules/wasm { };
 
     wtf8 = callPackage ../development/ocaml-modules/wtf8 { };

From 71a30baab4e0292d1d7ee216abb599ed121b877f Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Tue, 6 Nov 2018 01:38:48 -0500
Subject: [PATCH 0579/1129] flow: 0.80.0 -> 0.85.0

---
 .../tools/analysis/flow/default.nix           | 29 ++++++++-----------
 1 file changed, 12 insertions(+), 17 deletions(-)

diff --git a/pkgs/development/tools/analysis/flow/default.nix b/pkgs/development/tools/analysis/flow/default.nix
index 00b129706284..3d7a8abf4fe6 100644
--- a/pkgs/development/tools/analysis/flow/default.nix
+++ b/pkgs/development/tools/analysis/flow/default.nix
@@ -1,33 +1,28 @@
-{ stdenv, fetchFromGitHub, lib, ocamlPackages, libelf, cf-private, CoreServices }:
-
-with lib;
+{ stdenv, fetchFromGitHub, ocamlPackages, cf-private, CoreServices }:
 
 stdenv.mkDerivation rec {
-  version = "0.80.0";
+  version = "0.85.0";
   name = "flow-${version}";
 
   src = fetchFromGitHub {
-    owner = "facebook";
-    repo = "flow";
-    rev = "v${version}";
-    sha256 = "0jixisimqwbr46gh9357ya0rscv46svm6kqnawkq1shlf9nwa3lx";
+    owner  = "facebook";
+    repo   = "flow";
+    rev    = "refs/tags/v${version}";
+    sha256 = "0kci017bl4ihq89zpwlgdlwzv7kili8146940kyar5v66kgf7xsh";
   };
 
   installPhase = ''
-    mkdir -p $out/bin
-    cp bin/flow $out/bin/
+    install -Dm755 -t $out/bin bin/flow
   '';
 
-  buildInputs = [ libelf
-  ] ++ (with ocamlPackages; [
-    ocaml findlib camlp4 sedlex ocamlbuild lwt_ppx ppx_deriving ppx_gen_rec lwt_log wtf8 dtoa
-  ]) ++ optionals stdenv.isDarwin [ cf-private CoreServices ];
+  buildInputs = (with ocamlPackages; [ ocaml findlib ocamlbuild dtoa core_kernel sedlex ocaml_lwt lwt_log lwt_ppx ppx_deriving ppx_gen_rec ppx_tools_versioned visitors wtf8 ])
+    ++ stdenv.lib.optionals stdenv.isDarwin [ cf-private CoreServices ];
 
   meta = with stdenv.lib; {
     description = "A static type checker for JavaScript";
-    homepage = http://flowtype.org;
-    license = licenses.bsd3;
-    platforms = [ "x86_64-linux" "x86_64-darwin" ];
+    homepage = https://flow.org/;
+    license = licenses.mit;
+    platforms = ocamlPackages.ocaml.meta.platforms;
     maintainers = with maintainers; [ puffnfresh globin ];
   };
 }

From 993bd5df2240ef9223dd0b969ccd5f5fc7495526 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Tue, 6 Nov 2018 13:45:14 +0000
Subject: [PATCH 0580/1129] coqPackages.mathcomp: use fetchFromGitHub

---
 pkgs/development/coq-modules/mathcomp/default.nix | 12 +++++++-----
 1 file changed, 7 insertions(+), 5 deletions(-)

diff --git a/pkgs/development/coq-modules/mathcomp/default.nix b/pkgs/development/coq-modules/mathcomp/default.nix
index c99744168dbc..0a6ba2ca08c8 100644
--- a/pkgs/development/coq-modules/mathcomp/default.nix
+++ b/pkgs/development/coq-modules/mathcomp/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, coq, ncurses, which
+{ stdenv, fetchFromGitHub, coq, ncurses, which
 , graphviz, withDoc ? false
 }:
 
@@ -7,12 +7,12 @@ let param =
   if stdenv.lib.versionAtLeast coq.coq-version "8.6" then
   {
     version = "1.7.0";
-    sha256 = "05zgyi4wmasi1rcyn5jq42w0bi9713q9m8dl1fdgl66nmacixh39";
+    sha256 = "0wnhj9nqpx2bw6n1l4i8jgrw3pjajvckvj3lr4vzjb3my2lbxdd1";
   }
   else if stdenv.lib.versionAtLeast coq.coq-version "8.5" then
   {
     version = "1.6.1";
-    sha256 = "1j9ylggjzrxz1i2hdl2yhsvmvy5z6l4rprwx7604401080p5sgjw";
+    sha256 = "1ilw6vm4dlsdv9cd7kmf0vfrh2kkzr45wrqr8m37miy0byzr4p9i";
   }
   else throw "No version of math-comp is available for Coq ${coq.coq-version}";
 
@@ -21,8 +21,10 @@ in
 stdenv.mkDerivation {
   name = "coq${coq.coq-version}-mathcomp-${param.version}";
 
-  src = fetchurl {
-    url = "https://github.com/math-comp/math-comp/archive/mathcomp-${param.version}.tar.gz";
+  src = fetchFromGitHub {
+    owner = "math-comp";
+    repo = "math-comp";
+    rev = "mathcomp-${param.version}";
     inherit (param) sha256;
   };
 

From 10e4d63c6ca85f31d7141ddbed05e5b5009ace43 Mon Sep 17 00:00:00 2001
From: Andrew Kelley <superjoe30@gmail.com>
Date: Tue, 6 Nov 2018 09:40:19 -0500
Subject: [PATCH 0581/1129] remove qgifer

I was the one who originally packaged it, but it never really worked
well. I don't think anyone is using it.
---
 pkgs/applications/video/qgifer/default.nix | 25 ----------------------
 pkgs/top-level/all-packages.nix            |  4 ----
 2 files changed, 29 deletions(-)
 delete mode 100644 pkgs/applications/video/qgifer/default.nix

diff --git a/pkgs/applications/video/qgifer/default.nix b/pkgs/applications/video/qgifer/default.nix
deleted file mode 100644
index 8185e15dcc8b..000000000000
--- a/pkgs/applications/video/qgifer/default.nix
+++ /dev/null
@@ -1,25 +0,0 @@
-{ stdenv, fetchsvn, cmake, opencv, qt4, giflib }:
-
-stdenv.mkDerivation rec {
-  name = "qgifer-${version}";
-  version = "0.2.1";
-
-  src = fetchsvn {
-    url = "https://svn.code.sf.net/p/qgifer/code/tags/${name}";
-    sha256 = "0fv40n58xjwfr06ix9ga79hs527rrzfaq1sll3n2xxchpgf3wf4f";
-  };
-
-  postPatch = ''
-    substituteInPlace CMakeLists.txt --replace "SET(CMAKE_INSTALL_PREFIX" "#"
-  '';
-
-  buildInputs = [ cmake opencv qt4 giflib ];
-
-  meta = with stdenv.lib; {
-    description = "Video-based animated GIF creator";
-    homepage = https://sourceforge.net/projects/qgifer/;
-    license = licenses.gpl3;
-    platforms = platforms.unix;
-    maintainers = [ maintainers.andrewrk ];
-  };
-}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index e8aa4618fad2..b87b65201b0f 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -4973,10 +4973,6 @@ with pkgs;
   esteidfirefoxplugin = callPackage ../applications/networking/browsers/mozilla-plugins/esteidfirefoxplugin { };
 
 
-  qgifer = callPackage ../applications/video/qgifer {
-    giflib = giflib_4_1;
-  };
-
   qhull = callPackage ../development/libraries/qhull { };
 
   qjoypad = callPackage ../tools/misc/qjoypad { };

From 329bf4c3e1f3c8020ab9e31ba652f6b13e713630 Mon Sep 17 00:00:00 2001
From: Shea Levy <shlevy@xps13.shealevy.com>
Date: Tue, 6 Nov 2018 09:42:45 -0500
Subject: [PATCH 0582/1129] linux-riscv: Remove.

risc-v changes are now upstream.

See #49490
---
 pkgs/os-specific/linux/kernel/linux-riscv.nix | 18 ------------------
 pkgs/top-level/all-packages.nix               |  7 -------
 2 files changed, 25 deletions(-)
 delete mode 100644 pkgs/os-specific/linux/kernel/linux-riscv.nix

diff --git a/pkgs/os-specific/linux/kernel/linux-riscv.nix b/pkgs/os-specific/linux/kernel/linux-riscv.nix
deleted file mode 100644
index dbc69144c4da..000000000000
--- a/pkgs/os-specific/linux/kernel/linux-riscv.nix
+++ /dev/null
@@ -1,18 +0,0 @@
-{ stdenv, buildPackages, fetchFromGitHub, perl, buildLinux, libelf, utillinux, ... } @ args:
-
-buildLinux (args // rec {
-  version = "4.16-rc6";
-  modDirVersion = "4.16.0-rc6";
-  extraMeta.branch = "4.16";
-
-  src = fetchFromGitHub {
-    owner = "shlevy";
-    repo ="riscv-linux";
-    rev = "a54f259c2adce68e3bd7600be8989bf1ddf9ea3a";
-    sha256 = "140w6mj4hm1vf4zsmcr2w5cghcaalbvw5d4m9z57dmq1z5plsl4q";
-  };
-
-  # Should the testing kernels ever be built on Hydra?
-  extraMeta.hydraPlatforms = [];
-
-} // (args.argsOverride or {}))
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index e8aa4618fad2..7f29df2948e9 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -14329,13 +14329,6 @@ with pkgs;
       ];
   };
 
-  linux_riscv = callPackage ../os-specific/linux/kernel/linux-riscv.nix {
-    kernelPatches = [
-      kernelPatches.bridge_stp_helper
-      kernelPatches.modinst_arg_list_too_long
-    ];
-  };
-
   linux_hardkernel_4_14 = callPackage ../os-specific/linux/kernel/linux-hardkernel-4.14.nix {
     kernelPatches = [
       kernelPatches.bridge_stp_helper

From 5b813ebbc40a3da6560594276eda08af74ce31b0 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Tue, 6 Nov 2018 15:00:45 +0000
Subject: [PATCH 0583/1129] coqPackages.ssreflect: inherit mathcomp's
 source/meta attributes

---
 .../coq-modules/mathcomp/default.nix          | 10 +++--
 .../coq-modules/ssreflect/default.nix         | 44 ++++---------------
 2 files changed, 15 insertions(+), 39 deletions(-)

diff --git a/pkgs/development/coq-modules/mathcomp/default.nix b/pkgs/development/coq-modules/mathcomp/default.nix
index 0a6ba2ca08c8..1e5b6b7bf666 100644
--- a/pkgs/development/coq-modules/mathcomp/default.nix
+++ b/pkgs/development/coq-modules/mathcomp/default.nix
@@ -18,8 +18,11 @@ let param =
 
 in
 
-stdenv.mkDerivation {
-  name = "coq${coq.coq-version}-mathcomp-${param.version}";
+stdenv.mkDerivation rec {
+  name = "coq${coq.coq-version}-mathcomp-${version}";
+
+  # used in ssreflect
+  inherit (param) version;
 
   src = fetchFromGitHub {
     owner = "math-comp";
@@ -35,10 +38,11 @@ stdenv.mkDerivation {
 
   buildFlags = stdenv.lib.optionalString withDoc "doc";
 
+  COQBIN = "${coq}/bin/";
+
   preBuild = ''
     patchShebangs etc/utils/ssrcoqdep || true
     cd mathcomp
-    export COQBIN=${coq}/bin/
   '';
 
   installPhase = ''
diff --git a/pkgs/development/coq-modules/ssreflect/default.nix b/pkgs/development/coq-modules/ssreflect/default.nix
index 300b00afce1e..1fcb7e2da8ae 100644
--- a/pkgs/development/coq-modules/ssreflect/default.nix
+++ b/pkgs/development/coq-modules/ssreflect/default.nix
@@ -1,40 +1,22 @@
-{ stdenv, fetchurl, coq, ncurses, which
-, graphviz, withDoc ? false
+{ stdenv, fetchFromGitHub, coq, ncurses, which
+, graphviz, mathcomp, withDoc ? false
 }:
 
-let param =
+stdenv.mkDerivation rec {
+  name = "coq${coq.coq-version}-ssreflect-${version}";
 
-  if stdenv.lib.versionAtLeast coq.coq-version "8.6" then
-  {
-    version = "1.7.0";
-    sha256 = "05zgyi4wmasi1rcyn5jq42w0bi9713q9m8dl1fdgl66nmacixh39";
-  }
-  else if stdenv.lib.versionAtLeast coq.coq-version "8.5" then
-  {
-    version = "1.6.1";
-    sha256 = "1j9ylggjzrxz1i2hdl2yhsvmvy5z6l4rprwx7604401080p5sgjw";
-  }
-  else throw "No version of SSReflect is available for Coq ${coq.coq-version}";
-
-in
-
-stdenv.mkDerivation {
-
-  name = "coq${coq.coq-version}-ssreflect-${param.version}";
-  src = fetchurl {
-    url = "https://github.com/math-comp/math-comp/archive/mathcomp-${param.version}.tar.gz";
-    inherit (param) sha256;
-  };
+  inherit (mathcomp) src version meta;
 
   nativeBuildInputs = stdenv.lib.optionals withDoc [ graphviz ];
   buildInputs = [ coq ncurses which ] ++ (with coq.ocamlPackages; [ ocaml findlib camlp5 ]);
 
   enableParallelBuilding = true;
 
+  COQBIN = "${coq}/bin/";
+
   preBuild = ''
     patchShebangs etc/utils/ssrcoqdep || true
     cd mathcomp/ssreflect
-    export COQBIN=${coq}/bin/
   '';
 
   installPhase = ''
@@ -46,15 +28,5 @@ stdenv.mkDerivation {
     cp -r html $out/share/doc/coq/${coq.coq-version}/user-contrib/mathcomp/ssreflect/
   '';
 
-  meta = with stdenv.lib; {
-    homepage = http://ssr.msr-inria.inria.fr/;
-    license = licenses.cecill-b;
-    maintainers = with maintainers; [ vbgl jwiegley ];
-    inherit (coq.meta) platforms;
-  };
-
-  passthru = {
-    compatibleCoqVersions = v: stdenv.lib.versionAtLeast v "8.5";
-  };
-
+  passthru.compatibleCoqVersions = mathcomp.compatibleCoqVersions;
 }

From 1048a7349ec1b6ce7d56d5574ffdd8e87991c6a6 Mon Sep 17 00:00:00 2001
From: Sebastien Maret <sebastien.maret@univ-grenoble-alpes.fr>
Date: Tue, 6 Nov 2018 16:52:08 +0100
Subject: [PATCH 0584/1129] gildas: 20181001_b -> 20181101_a

---
 pkgs/applications/science/astronomy/gildas/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/science/astronomy/gildas/default.nix b/pkgs/applications/science/astronomy/gildas/default.nix
index 802f558731a8..65e12125801a 100644
--- a/pkgs/applications/science/astronomy/gildas/default.nix
+++ b/pkgs/applications/science/astronomy/gildas/default.nix
@@ -7,8 +7,8 @@ let
 in
 
 stdenv.mkDerivation rec {
-  srcVersion = "oct18b";
-  version = "20181001_b";
+  srcVersion = "nov18a";
+  version = "20181101_a";
   name = "gildas-${version}";
 
   src = fetchurl {
@@ -16,7 +16,7 @@ stdenv.mkDerivation rec {
     # source code of the previous release to a different directory
     urls = [ "http://www.iram.fr/~gildas/dist/gildas-src-${srcVersion}.tar.gz"
       "http://www.iram.fr/~gildas/dist/archive/gildas/gildas-src-${srcVersion}.tar.gz" ];
-    sha256 = "1q54q7y4zdax9vr28pvmy5g34kyr92jr3v1rkpjw7lxjafyqwy27";
+    sha256 = "1dl2v8y6vrwaxm3b7nf6dv3ipzybhlhy2kxwnwgc7gqz5704251v";
   };
 
   enableParallelBuilding = true;

From f00a4af18fc7a3bae3e59b370554f82c882e3a42 Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Tue, 6 Nov 2018 18:48:14 +0100
Subject: [PATCH 0585/1129] quartz-wm: add cf-private

    Undefined symbols for architecture x86_64:
      "_CFNotificationCenterAddObserver", referenced from:
          _main in main.o
      "_CFNotificationCenterGetDistributedCenter", referenced from:
          _main in main.o
      "_OBJC_CLASS_$_NSTimer", referenced from:
          objc-class-ref in main.o
          objc-class-ref in x-screen.o
      "_OBJC_EHTYPE_$_NSException", referenced from:
          GCC_except_table25 in main.o
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/servers/x11/quartz-wm/default.nix | 8 +++++---
 pkgs/top-level/all-packages.nix        | 3 ++-
 2 files changed, 7 insertions(+), 4 deletions(-)

diff --git a/pkgs/servers/x11/quartz-wm/default.nix b/pkgs/servers/x11/quartz-wm/default.nix
index d724a81debbb..ccb3937ac85f 100644
--- a/pkgs/servers/x11/quartz-wm/default.nix
+++ b/pkgs/servers/x11/quartz-wm/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, lib, fetchurl, xorg, pixman, pkgconfig, AppKit, Xplugin, darwin }:
+{ stdenv, fetchurl, xorg, pixman, pkgconfig, AppKit, Foundation, Xplugin, cf-private }:
 
 let version = "1.3.1";
 in stdenv.mkDerivation {
@@ -19,9 +19,11 @@ in stdenv.mkDerivation {
     xorg.libXext
     pixman
     pkgconfig
-    AppKit Xplugin darwin.apple_sdk.frameworks.Foundation
+    AppKit Xplugin Foundation
+    # Needed for CFNotificationCenterAddObserver symbols.
+    cf-private
   ];
-  meta = with lib; {
+  meta = with stdenv.lib; {
     license = licenses.apsl20;
     platforms = platforms.darwin;
     maintainers = with maintainers; [ matthewbauer ];
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 2cc9beb895fd..060c4df627a6 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -13845,7 +13845,8 @@ with pkgs;
   xquartz = callPackage ../servers/x11/xquartz { };
   quartz-wm = callPackage ../servers/x11/quartz-wm {
     stdenv = clangStdenv;
-    inherit (darwin.apple_sdk.frameworks) AppKit;
+    inherit (darwin) cf-private;
+    inherit (darwin.apple_sdk.frameworks) AppKit Foundation;
     inherit (darwin.apple_sdk.libs) Xplugin;
   };
 

From 2b76ad8fe7d849c6c08040dafaab12ed919beb41 Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Tue, 6 Nov 2018 18:54:06 +0100
Subject: [PATCH 0586/1129] xquartz: add cf-private

    Undefined symbols for architecture x86_64:
      "_NSDefaultRunLoopMode", referenced from:
          _X11ApplicationMain in libXquartz.a(X11Application.o)
      "_OBJC_CLASS_$_NSArray", referenced from:
          objc-class-ref in libXquartz.a(X11Application.o)
          objc-class-ref in libXquartz.a(X11Controller.o)
          objc-class-ref in libxpbproxy.a(x-selection.o)
      "_OBJC_CLASS_$_NSData", referenced from:
          objc-class-ref in libxpbproxy.a(x-selection.o)
      "_OBJC_CLASS_$_NSDictionary", referenced from:
          objc-class-ref in libxpbproxy.a(x-selection.o)
      "_OBJC_CLASS_$_NSMutableArray", referenced from:
          objc-class-ref in libXquartz.a(X11Application.o)
          objc-class-ref in libXquartz.a(X11Controller.o)
      "_OBJC_CLASS_$_NSMutableDictionary", referenced from:
          objc-class-ref in libXquartz.a(X11Application.o)
      "_OBJC_CLASS_$_NSRunLoop", referenced from:
          objc-class-ref in libXquartz.a(X11Application.o)
      "_OBJC_CLASS_$_NSURL", referenced from:
          objc-class-ref in libXquartz.a(X11Application.o)
      "_OBJC_EHTYPE_$_NSException", referenced from:
          GCC_except_table29 in libxpbproxy.a(x-selection.o)
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/servers/x11/xquartz/default.nix | 13 +++++++++----
 pkgs/top-level/all-packages.nix      |  5 ++++-
 2 files changed, 13 insertions(+), 5 deletions(-)

diff --git a/pkgs/servers/x11/xquartz/default.nix b/pkgs/servers/x11/xquartz/default.nix
index 3fc7aaea9c93..8cb96d0ae39f 100644
--- a/pkgs/servers/x11/xquartz/default.nix
+++ b/pkgs/servers/x11/xquartz/default.nix
@@ -1,6 +1,7 @@
-{ stdenv, lib, buildEnv, makeFontsConf, gnused, writeScript, xorg, bashInteractive, xterm, makeWrapper, ruby
+{ stdenv, buildEnv, makeFontsConf, gnused, writeScript, xorg, bashInteractive, xterm, makeWrapper, ruby
 , quartz-wm, fontconfig, xlsfonts, xfontsel
 , ttf_bitstream_vera, freefont_ttf, liberation_ttf
+, cf-private
 , shell ? "${bashInteractive}/bin/bash"
 }:
 
@@ -97,7 +98,11 @@ let
 in stdenv.mkDerivation {
   name = "xquartz-${stdenv.lib.getVersion xorg.xorgserver}";
 
-  buildInputs = [ ruby makeWrapper ];
+  buildInputs = [
+    ruby makeWrapper
+    # Needed for NSDefaultRunLoopMode symbols.
+    cf-private
+  ];
 
   unpackPhase = "sourceRoot=.";
 
@@ -134,7 +139,7 @@ in stdenv.mkDerivation {
     defaultStartX="$out/bin/startx -- $out/bin/Xquartz"
 
     ruby ${./patch_plist.rb} \
-      ${lib.escapeShellArg (builtins.toXML {
+      ${stdenv.lib.escapeShellArg (builtins.toXML {
         XQUARTZ_DEFAULT_CLIENT = "${xterm}/bin/xterm";
         XQUARTZ_DEFAULT_SHELL  = "${shell}";
         XQUARTZ_DEFAULT_STARTX = "@STARTX@";
@@ -179,7 +184,7 @@ in stdenv.mkDerivation {
       --replace "@FONTCONFIG_FILE@" "$fontsConfPath"
   '';
 
-  meta = with lib; {
+  meta = with stdenv.lib; {
     platforms   = platforms.darwin;
     maintainers = with maintainers; [ cstrahan ];
     license     = licenses.mit;
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 060c4df627a6..8cd257857da7 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -13842,7 +13842,10 @@ with pkgs;
 
   xqilla = callPackage ../development/tools/xqilla { };
 
-  xquartz = callPackage ../servers/x11/xquartz { };
+  xquartz = callPackage ../servers/x11/xquartz {
+    inherit (darwin) cf-private;
+  };
+
   quartz-wm = callPackage ../servers/x11/quartz-wm {
     stdenv = clangStdenv;
     inherit (darwin) cf-private;

From ecf7c9c4b4e7f5b3737cb4a92570333fde7684c0 Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Tue, 6 Nov 2018 19:00:03 +0100
Subject: [PATCH 0587/1129] xorg.xorgserver: add cf-private on darwin

    Undefined symbols for architecture x86_64:
      "_NSDefaultRunLoopMode", referenced from:
          _X11ApplicationMain in libXquartz.a(X11Application.o)
      "_OBJC_CLASS_$_NSArray", referenced from:
          objc-class-ref in libXquartz.a(X11Application.o)
          objc-class-ref in libXquartz.a(X11Controller.o)
          objc-class-ref in libxpbproxy.a(x-selection.o)
      "_OBJC_CLASS_$_NSData", referenced from:
          objc-class-ref in libxpbproxy.a(x-selection.o)
      "_OBJC_CLASS_$_NSDictionary", referenced from:
          objc-class-ref in libxpbproxy.a(x-selection.o)
      "_OBJC_CLASS_$_NSMutableArray", referenced from:
          objc-class-ref in libXquartz.a(X11Application.o)
          objc-class-ref in libXquartz.a(X11Controller.o)
      "_OBJC_CLASS_$_NSMutableDictionary", referenced from:
          objc-class-ref in libXquartz.a(X11Application.o)
      "_OBJC_CLASS_$_NSRunLoop", referenced from:
          objc-class-ref in libXquartz.a(X11Application.o)
      "_OBJC_CLASS_$_NSURL", referenced from:
          objc-class-ref in libXquartz.a(X11Application.o)
      "_OBJC_EHTYPE_$_NSException", referenced from:
          GCC_except_table29 in libxpbproxy.a(x-selection.o)
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/servers/x11/xorg/overrides.nix | 22 +++++++++++++---------
 pkgs/top-level/all-packages.nix     |  4 +++-
 2 files changed, 16 insertions(+), 10 deletions(-)

diff --git a/pkgs/servers/x11/xorg/overrides.nix b/pkgs/servers/x11/xorg/overrides.nix
index 4772ac7f7ee2..8f4c251335a9 100644
--- a/pkgs/servers/x11/xorg/overrides.nix
+++ b/pkgs/servers/x11/xorg/overrides.nix
@@ -2,10 +2,12 @@
   stdenv, makeWrapper, lib, fetchurl, fetchpatch,
 
   automake, autoconf, libtool, intltool, mtdev, libevdev, libinput,
-  python, freetype, apple_sdk, tradcpp, fontconfig,
+  python, freetype, tradcpp, fontconfig,
   libGL, spice-protocol, zlib, libGLU, dbus, libunwind, libdrm,
   mesa_noglu, udev, bootstrap_cmds, bison, flex, clangStdenv, autoreconfHook,
-  mcpp, epoxy, openssl, pkgconfig, llvm_6 }:
+  mcpp, epoxy, openssl, pkgconfig, llvm_6,
+  cf-private, ApplicationServices, Carbon, Cocoa, Xplugin
+}:
 
 let
   inherit (stdenv) lib isDarwin;
@@ -108,9 +110,9 @@ self: super:
   });
 
   libAppleWM = super.libAppleWM.overrideAttrs (attrs: {
-    buildInputs = attrs.buildInputs ++ [ apple_sdk.frameworks.ApplicationServices ];
+    buildInputs = attrs.buildInputs ++ [ ApplicationServices ];
     preConfigure = ''
-      substituteInPlace src/Makefile.in --replace -F/System -F${apple_sdk.frameworks.ApplicationServices}
+      substituteInPlace src/Makefile.in --replace -F/System -F${ApplicationServices}
     '';
   });
 
@@ -466,7 +468,11 @@ self: super:
               sha256 = "1j1i3n5xy1wawhk95kxqdc54h34kg7xp4nnramba2q8xqfr5k117";
             };
             nativeBuildInputs = [ pkgconfig ];
-            buildInputs = [ dri2proto dri3proto renderproto libdrm openssl libX11 libXau libXaw libxcb xcbutil xcbutilwm xcbutilimage xcbutilkeysyms xcbutilrenderutil libXdmcp libXfixes libxkbfile libXmu libXpm libXrender libXres libXt ];
+            buildInputs = [ dri2proto dri3proto renderproto libdrm openssl libX11 libXau libXaw libxcb xcbutil xcbutilwm xcbutilimage xcbutilkeysyms xcbutilrenderutil libXdmcp libXfixes libxkbfile libXmu libXpm libXrender libXres libXt ]
+              ++ stdenv.lib.optionals stdenv.isDarwin [
+                # Needed for NSDefaultRunLoopMode symbols.
+                cf-private
+              ];
             postPatch = stdenv.lib.optionalString stdenv.isLinux "sed '1i#include <malloc.h>' -i include/os.h";
             meta.platforms = stdenv.lib.platforms.unix;
         } else throw "unsupported xorg abiCompat ${abiCompat} for ${attrs_passed.name}";
@@ -538,9 +544,7 @@ self: super:
         nativeBuildInputs = attrs.nativeBuildInputs ++ [ autoreconfHook self.utilmacros self.fontutil ];
         buildInputs = commonBuildInputs ++ [
           bootstrap_cmds automake autoconf
-          apple_sdk.libs.Xplugin
-          apple_sdk.frameworks.Carbon
-          apple_sdk.frameworks.Cocoa
+          Xplugin Carbon Cocoa
         ];
         propagatedBuildInputs = commonPropagatedBuildInputs ++ [
           libAppleWM applewmproto
@@ -582,7 +586,7 @@ self: super:
         preConfigure = ''
           mkdir -p $out/Applications
           export NIX_CFLAGS_COMPILE="$NIX_CFLAGS_COMPILE -Wno-error"
-          substituteInPlace hw/xquartz/pbproxy/Makefile.in --replace -F/System -F${apple_sdk.frameworks.ApplicationServices}
+          substituteInPlace hw/xquartz/pbproxy/Makefile.in --replace -F/System -F${ApplicationServices}
         '';
         postInstall = ''
           rm -fr $out/share/X11/xkb/compiled
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 8cd257857da7..08e6662b4edc 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -13858,7 +13858,9 @@ with pkgs;
   # have created a cycle.
   xorg = recurseIntoAttrs ((lib.callPackageWith __splicedPackages ../servers/x11/xorg {
   }).overrideScope' (lib.callPackageWith __splicedPackages ../servers/x11/xorg/overrides.nix {
-    inherit (darwin) apple_sdk;
+    inherit (darwin) cf-private;
+    inherit (darwin.apple_sdk.frameworks) ApplicationServices Carbon Cocoa;
+    inherit (darwin.apple_sdk.libs) Xplugin;
     bootstrap_cmds = if stdenv.isDarwin then darwin.bootstrap_cmds else null;
     python = python2; # Incompatible with Python 3x
     udev = if stdenv.isLinux then udev else null;

From 15995ea2b29d7253a74f75948ce881f29eeeafa1 Mon Sep 17 00:00:00 2001
From: Vincent Laporte <Vincent.Laporte@gmail.com>
Date: Sun, 4 Nov 2018 06:24:52 +0000
Subject: [PATCH 0588/1129] ocamlPackages.odoc: 1.2.0 -> 1.3.0

---
 pkgs/development/ocaml-modules/odoc/default.nix | 16 ++++++----------
 1 file changed, 6 insertions(+), 10 deletions(-)

diff --git a/pkgs/development/ocaml-modules/odoc/default.nix b/pkgs/development/ocaml-modules/odoc/default.nix
index 3b1005106272..ef91b110c7ce 100644
--- a/pkgs/development/ocaml-modules/odoc/default.nix
+++ b/pkgs/development/ocaml-modules/odoc/default.nix
@@ -1,22 +1,18 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune
-, bos, cmdliner, doc-ock-html, doc-ock-xml
+{ stdenv, fetchFromGitHub, ocaml, findlib, dune, cppo
+, bos, cmdliner, tyxml
 }:
 
 stdenv.mkDerivation rec {
   name = "ocaml${ocaml.version}-odoc-${version}";
-  version = "1.2.0";
+  version = "1.3.0";
   src = fetchFromGitHub {
     owner = "ocaml";
     repo = "odoc";
-    rev = "v${version}";
-    sha256 = "0ixnhfpm1nw4bvjj8qhcyy283pdr5acqpg5wxwq3n1l4mad79cgh";
+    rev = version;
+    sha256 = "0hjan5aj5zk8j8qyagv9r4hqm469mh207cv2m6kxwgnw0c3cz7sy";
   };
 
-  buildInputs = [ ocaml findlib dune cmdliner ];
-
-  propagatedBuildInputs = [ bos doc-ock-html doc-ock-xml ];
-
-  configurePhase = "ocaml bin/set-etc bin/odoc_etc.ml $out/etc/odoc";
+  buildInputs = [ ocaml findlib dune cppo bos cmdliner tyxml ];
 
   inherit (dune) installPhase;
 

From e5534fa7607bc37673623fa589181edd092da183 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Bastian=20K=C3=B6cher?= <git@kchr.de>
Date: Mon, 29 Oct 2018 09:19:44 +0100
Subject: [PATCH 0589/1129] plasma5: 5.14.0 -> 5.14.3

---
 pkgs/desktops/plasma-5/fetch.sh |   2 +-
 pkgs/desktops/plasma-5/srcs.nix | 360 ++++++++++++++++----------------
 2 files changed, 181 insertions(+), 181 deletions(-)

diff --git a/pkgs/desktops/plasma-5/fetch.sh b/pkgs/desktops/plasma-5/fetch.sh
index 64907e6271d8..312691dcc7ef 100644
--- a/pkgs/desktops/plasma-5/fetch.sh
+++ b/pkgs/desktops/plasma-5/fetch.sh
@@ -1 +1 @@
-WGET_ARGS=( https://download.kde.org/stable/plasma/5.14.0/ -A '*.tar.xz' )
+WGET_ARGS=( https://download.kde.org/stable/plasma/5.14.3/ -A '*.tar.xz' )
diff --git a/pkgs/desktops/plasma-5/srcs.nix b/pkgs/desktops/plasma-5/srcs.nix
index 690f5fafef27..a4d90aa7e3d7 100644
--- a/pkgs/desktops/plasma-5/srcs.nix
+++ b/pkgs/desktops/plasma-5/srcs.nix
@@ -3,363 +3,363 @@
 
 {
   bluedevil = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/bluedevil-5.14.0.tar.xz";
-      sha256 = "0d1bw6cp2vwhs17j0bgc3gysy3g2syb1z0zwg28sa889l8a3qyv9";
-      name = "bluedevil-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/bluedevil-5.14.3.tar.xz";
+      sha256 = "048iyzps89caw6dr1x767byj8a7gcg9vl1fvnndabkhm3d71cgxk";
+      name = "bluedevil-5.14.3.tar.xz";
     };
   };
   breeze = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/breeze-5.14.0.tar.xz";
-      sha256 = "0gd95a7km0pqc0qinn2p0kv72j0ihdl96vs14f5jr5n78a2r7r9a";
-      name = "breeze-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/breeze-5.14.3.tar.xz";
+      sha256 = "19wm6krcnyis1vgs655jynvgm93k776drvjra4ysy378d2n3f1w6";
+      name = "breeze-5.14.3.tar.xz";
     };
   };
   breeze-grub = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/breeze-grub-5.14.0.tar.xz";
-      sha256 = "17kghx9qv7flm2019alqg1a6pnacgczj1hc9sc0bvj8znh9hhxvh";
-      name = "breeze-grub-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/breeze-grub-5.14.3.tar.xz";
+      sha256 = "1nkf4av6xdx7q8z6hq0gdsmm38z5xawh1awpcjwc61dd8n55bn8a";
+      name = "breeze-grub-5.14.3.tar.xz";
     };
   };
   breeze-gtk = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/breeze-gtk-5.14.0.tar.xz";
-      sha256 = "1zlhyv26k3zqm2bbd9mk7123q5xy5g2cp6ayavhglgxxb8n0zyx9";
-      name = "breeze-gtk-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/breeze-gtk-5.14.3.tar.xz";
+      sha256 = "000w368cvyi8whbrp500jjcrdivm2fl7kwcn81fj8ydk7wn5pmyn";
+      name = "breeze-gtk-5.14.3.tar.xz";
     };
   };
   breeze-plymouth = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/breeze-plymouth-5.14.0.tar.xz";
-      sha256 = "1ilf3cp7cg3lpkxvd8n7h33wvsbbikrvd514gan2ns16j9d4ziz1";
-      name = "breeze-plymouth-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/breeze-plymouth-5.14.3.tar.xz";
+      sha256 = "0fd8d5hwkhrd3n9ahfw99anh43azi28n5wh47ncrwdy7m81v4lgx";
+      name = "breeze-plymouth-5.14.3.tar.xz";
     };
   };
   discover = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/discover-5.14.0.tar.xz";
-      sha256 = "1chkf5hjpnb4laq5sn7rr8f4fv90mg4brdsx71cz1b5xbvgyy1sf";
-      name = "discover-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/discover-5.14.3.tar.xz";
+      sha256 = "12zx6p68yq5mhv459wy7y2f90nmw3n0n9l7xpb6g7k5ssmr1jqk4";
+      name = "discover-5.14.3.tar.xz";
     };
   };
   drkonqi = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/drkonqi-5.14.0.tar.xz";
-      sha256 = "0i5zgafkdxw6wqqfw81ygdmg5fffy2gkf6sciq7f8nfxxglw6pkp";
-      name = "drkonqi-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/drkonqi-5.14.3.tar.xz";
+      sha256 = "11k8mf45rjrqxb3pny96x6pz50x9hglpaspsmjz9w19b2drxg79i";
+      name = "drkonqi-5.14.3.tar.xz";
     };
   };
   kactivitymanagerd = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/kactivitymanagerd-5.14.0.tar.xz";
-      sha256 = "03jxvf4mgh0wmphykskc8ra49ghrjv5in4mgzpafswn7w8q8gyii";
-      name = "kactivitymanagerd-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/kactivitymanagerd-5.14.3.tar.xz";
+      sha256 = "0ham0p2zrjx47g12fad2gci56jiq5x57vgnpr29pypqrc3hqwsn5";
+      name = "kactivitymanagerd-5.14.3.tar.xz";
     };
   };
   kde-cli-tools = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/kde-cli-tools-5.14.0.tar.xz";
-      sha256 = "1n51vaiy073jzs051wlpll7652bb7vwg5qmravndhl8ibqrv7qaz";
-      name = "kde-cli-tools-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/kde-cli-tools-5.14.3.tar.xz";
+      sha256 = "1ld4rhmjbm6xz5xri8r1zs4lr2d443372h7pqjs1hc3r836aivwa";
+      name = "kde-cli-tools-5.14.3.tar.xz";
     };
   };
   kdecoration = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/kdecoration-5.14.0.tar.xz";
-      sha256 = "01gkl0yqplm1l2qa4gfw7rzi5zfdxq7d3a25qicdwhas69hc8nzm";
-      name = "kdecoration-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/kdecoration-5.14.3.tar.xz";
+      sha256 = "0sifflfdz3md5ymlpkzp2pvccfr0gzw8dx87j1s5qk1b04fx9vg8";
+      name = "kdecoration-5.14.3.tar.xz";
     };
   };
   kde-gtk-config = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/kde-gtk-config-5.14.0.tar.xz";
-      sha256 = "0mb1am14hd3x5gkmy3vcg3wb9g29c8y38ywhr0f93riphws0nhvh";
-      name = "kde-gtk-config-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/kde-gtk-config-5.14.3.tar.xz";
+      sha256 = "1m0vhgwm5zrk7sg4j71qmn2gsm5qhhgvcdpgryc64kjdk24lss31";
+      name = "kde-gtk-config-5.14.3.tar.xz";
     };
   };
   kdeplasma-addons = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/kdeplasma-addons-5.14.0.tar.xz";
-      sha256 = "0k98ms851z2naw4rjmxldy6pl9a51mmwvq6c4znm2pnrw04jz15d";
-      name = "kdeplasma-addons-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/kdeplasma-addons-5.14.3.tar.xz";
+      sha256 = "1rw84wfym722z6cl127gwma9npjzy0yj65fzr9rqpplks8il6m4m";
+      name = "kdeplasma-addons-5.14.3.tar.xz";
     };
   };
   kgamma5 = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/kgamma5-5.14.0.tar.xz";
-      sha256 = "17vb1bb4glw6ccd1s1chjm07lvpkklcvny7rdjgmz2r00vk6mjqy";
-      name = "kgamma5-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/kgamma5-5.14.3.tar.xz";
+      sha256 = "03r866icbnk5q11zpnkxg3azcgbr6fp16b8mmsw7j4jl820shv4q";
+      name = "kgamma5-5.14.3.tar.xz";
     };
   };
   khotkeys = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/khotkeys-5.14.0.tar.xz";
-      sha256 = "0b2q4s0j6wji8112l89347fc8ph9vrf2p8ngig0c4dn4ayk7hqd1";
-      name = "khotkeys-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/khotkeys-5.14.3.tar.xz";
+      sha256 = "1arsjvxw7q6434y3c8l458ilmynqbdb30sdvfzgrlk19m1dqmkym";
+      name = "khotkeys-5.14.3.tar.xz";
     };
   };
   kinfocenter = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/kinfocenter-5.14.0.tar.xz";
-      sha256 = "0pc1jc7d26w2asa2yj8rr04rgjvmavlyhw3wd0dqv08rhr0rl7pj";
-      name = "kinfocenter-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/kinfocenter-5.14.3.tar.xz";
+      sha256 = "1kapxxb4f4lia7yr4jmx83y0vwn6m1hrij05p5d1axy90jwmcy37";
+      name = "kinfocenter-5.14.3.tar.xz";
     };
   };
   kmenuedit = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/kmenuedit-5.14.0.tar.xz";
-      sha256 = "0ld9q5jq7zc6kz72pg9qqg10rbargkwyks657cnv8id1pna17bsr";
-      name = "kmenuedit-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/kmenuedit-5.14.3.tar.xz";
+      sha256 = "0yikz8v3gawkbn1vds7i9xj2j4p1y8nv0adrhr4vwdii2ar37jvd";
+      name = "kmenuedit-5.14.3.tar.xz";
     };
   };
   kscreen = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/kscreen-5.14.0.tar.xz";
-      sha256 = "1y28a96kal2gziga2vr6vg5swv2ynfiv3804n06v9847rd7s3ixk";
-      name = "kscreen-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/kscreen-5.14.3.tar.xz";
+      sha256 = "0jn2d5373agh5b47v7xd17apbkpbrvl5z7x3n83k4q4j30q7pgs3";
+      name = "kscreen-5.14.3.tar.xz";
     };
   };
   kscreenlocker = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/kscreenlocker-5.14.0.tar.xz";
-      sha256 = "1nyd8jy4ngpg51nq46cx038i4w1qak9zi4d4v69blkhzd65gckj1";
-      name = "kscreenlocker-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/kscreenlocker-5.14.3.tar.xz";
+      sha256 = "1zn99zsn07fm4npf7l6n243bnn970pb818pfpbw9kgwjlh0nyms8";
+      name = "kscreenlocker-5.14.3.tar.xz";
     };
   };
   ksshaskpass = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/ksshaskpass-5.14.0.tar.xz";
-      sha256 = "0nqvr3z7058hfymw8gglnfmcxx976km6sf0msyd3ykfpymxsmz74";
-      name = "ksshaskpass-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/ksshaskpass-5.14.3.tar.xz";
+      sha256 = "1gh5hakc2i7m2scvf8nyrl8inkh1fsrggdydiwb02mg763lkk9nc";
+      name = "ksshaskpass-5.14.3.tar.xz";
     };
   };
   ksysguard = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/ksysguard-5.14.0.tar.xz";
-      sha256 = "0hbcx20r57lfh566q2974rs2kzlq5ghxadnd1ghiwz5141xh02bm";
-      name = "ksysguard-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/ksysguard-5.14.3.tar.xz";
+      sha256 = "1aw8r4ngq00lv0d38iddwdhlmmv97qiwqjvgzy4m20dfm7ldaldp";
+      name = "ksysguard-5.14.3.tar.xz";
     };
   };
   kwallet-pam = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/kwallet-pam-5.14.0.tar.xz";
-      sha256 = "0cw173wbf105p7028xik33lm38z82b1rlc7090l4khwsgmwgff97";
-      name = "kwallet-pam-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/kwallet-pam-5.14.3.tar.xz";
+      sha256 = "109jzfwf9b0c1mm5rq4jgiaf4sxad1wx4j9pmwxr4m17nf3ys5pg";
+      name = "kwallet-pam-5.14.3.tar.xz";
     };
   };
   kwayland-integration = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/kwayland-integration-5.14.0.tar.xz";
-      sha256 = "19xbqb7m6hxyg8s8jdbg1x9qcfia2ypm0z4k6zgva6mwqwhqcbw1";
-      name = "kwayland-integration-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/kwayland-integration-5.14.3.tar.xz";
+      sha256 = "117wvplwxhphk3yiy61dlid5nf42m869qkcsx5mlnjdwxglwgwfj";
+      name = "kwayland-integration-5.14.3.tar.xz";
     };
   };
   kwin = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/kwin-5.14.0.tar.xz";
-      sha256 = "0rd6hkyg6n0w2jnj648sp7gs7n624igraz8ajyrglfzvxkxvqi8i";
-      name = "kwin-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/kwin-5.14.3.tar.xz";
+      sha256 = "0yv8sa96rnaabi29mny17vyxswj4b4rgny75kznqnk6n01wjm4xy";
+      name = "kwin-5.14.3.tar.xz";
     };
   };
   kwrited = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/kwrited-5.14.0.tar.xz";
-      sha256 = "0s9lgi5a945xzpl1j5gdn65n8bywqlwfnrig56x90550achbvmlq";
-      name = "kwrited-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/kwrited-5.14.3.tar.xz";
+      sha256 = "1lzbrifsb9qvn4622rd3b0p5jfr67ql5rsd1lkw1jpib9ckzlrph";
+      name = "kwrited-5.14.3.tar.xz";
     };
   };
   libkscreen = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/libkscreen-5.14.0.tar.xz";
-      sha256 = "1fsi9cb724kwr0cll60dl9qh67290r3gp8lcsmlyw30zk9mqwgdi";
-      name = "libkscreen-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/libkscreen-5.14.3.tar.xz";
+      sha256 = "14zfmycnzf30jgbf1gcyp8kpipvn1w2sd6inrylyyf089565r9ai";
+      name = "libkscreen-5.14.3.tar.xz";
     };
   };
   libksysguard = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/libksysguard-5.14.0.tar.xz";
-      sha256 = "00s1dkiqykw2drlmvzs3hkdrkbk8n86s751kl4xlvcbslbijzcv0";
-      name = "libksysguard-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/libksysguard-5.14.3.tar.xz";
+      sha256 = "099cn9hmz5k10ms3wgskcdps91wmw8r0g52jknnid4ggb7vkpvkr";
+      name = "libksysguard-5.14.3.tar.xz";
     };
   };
   milou = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/milou-5.14.0.tar.xz";
-      sha256 = "1k413zs70ggsamwxxidlfjdf8aqrcnzznar86z30q3ki1y14xf1l";
-      name = "milou-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/milou-5.14.3.tar.xz";
+      sha256 = "16xqshzc4q2c0h9ihgmcqvyh181qacqz7c3amczzf4yc14xcsgxl";
+      name = "milou-5.14.3.tar.xz";
     };
   };
   oxygen = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/oxygen-5.14.0.tar.xz";
-      sha256 = "0kbafhzjkm61dpznx1w713jwyicj7qq76vk7zf6vz2g90b8c47na";
-      name = "oxygen-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/oxygen-5.14.3.tar.xz";
+      sha256 = "1q6xsk9aha6sxq98r28g6wg93ml6hcqd3b73ygrwgncx1rhia446";
+      name = "oxygen-5.14.3.tar.xz";
     };
   };
   plasma-browser-integration = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/plasma-browser-integration-5.14.0.tar.xz";
-      sha256 = "1s8cxlfyp8crq2j4appffnhc3cgx9igmqhxyyk9pr4jbb4cwv42b";
-      name = "plasma-browser-integration-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/plasma-browser-integration-5.14.3.tar.xz";
+      sha256 = "1fzxmrijrwh75ni5g79cy2dj6g6mja9vkgd3hqrbir7hmmrqs8b3";
+      name = "plasma-browser-integration-5.14.3.tar.xz";
     };
   };
   plasma-desktop = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/plasma-desktop-5.14.0.tar.xz";
-      sha256 = "0qrqd78bp9n73rr142wxiynxij2i8cw41ckgd46iw8an550v8s80";
-      name = "plasma-desktop-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/plasma-desktop-5.14.3.tar.xz";
+      sha256 = "0kn2l5ca0pmpfjalnbc53h892hj9kr0xv9070a0i09fn6qn4pxcs";
+      name = "plasma-desktop-5.14.3.tar.xz";
     };
   };
   plasma-integration = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/plasma-integration-5.14.0.tar.xz";
-      sha256 = "1dv43iwh6rp5ldn16jd6krkab6nmplav47j5qvngcp88src31k47";
-      name = "plasma-integration-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/plasma-integration-5.14.3.tar.xz";
+      sha256 = "0iwfkv32s97s459ksbmrk6w3p5qkmg99yiy3prclq73pa7i176x9";
+      name = "plasma-integration-5.14.3.tar.xz";
     };
   };
   plasma-nm = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/plasma-nm-5.14.0.tar.xz";
-      sha256 = "1pr4dg90vw22jzsrbhzx3rycyj9by8r4239ypprw0i5d9795mian";
-      name = "plasma-nm-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/plasma-nm-5.14.3.tar.xz";
+      sha256 = "0sgqb5izlfpk95vjyn65jg9mwidvlranzrdjq5nyyl47pf8nfigf";
+      name = "plasma-nm-5.14.3.tar.xz";
     };
   };
   plasma-pa = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/plasma-pa-5.14.0.tar.xz";
-      sha256 = "1b95vyirgxfpjrccnl81bynlk3zdxz0bf7czsap0bnwhal0mcp2w";
-      name = "plasma-pa-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/plasma-pa-5.14.3.tar.xz";
+      sha256 = "1s1csabc6w9vmi0klckq5kvrfbkv2qn9jv7x8r3v6nx6wibc5y7r";
+      name = "plasma-pa-5.14.3.tar.xz";
     };
   };
   plasma-sdk = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/plasma-sdk-5.14.0.tar.xz";
-      sha256 = "0b5h7qvan0f5afdf4d19dmpalgbd9gyxgkq3r5h7axqdfdanz38f";
-      name = "plasma-sdk-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/plasma-sdk-5.14.3.tar.xz";
+      sha256 = "0sx7a24fzw15dwnlm574z8643sy4kqzcqai1v6l8078smqz4kdqc";
+      name = "plasma-sdk-5.14.3.tar.xz";
     };
   };
   plasma-tests = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/plasma-tests-5.14.0.tar.xz";
-      sha256 = "01li04p44f1yajnjhvhhqd8mjwv8si5d02749p5dn0x80fkxgh9d";
-      name = "plasma-tests-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/plasma-tests-5.14.3.tar.xz";
+      sha256 = "0y975sv202gg68fnv3wycisx642vmb177zl7x9gkk66wdi5958gb";
+      name = "plasma-tests-5.14.3.tar.xz";
     };
   };
   plasma-vault = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/plasma-vault-5.14.0.tar.xz";
-      sha256 = "1kclryjld7lanimr6n7r1b9y8wqgyjvcsky9cfq3ql1ssfc0ncm3";
-      name = "plasma-vault-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/plasma-vault-5.14.3.tar.xz";
+      sha256 = "05l96lnfni2vc92vsxjvzlwh0vd8kacmn1ywp3rwzklwdyzwwbw5";
+      name = "plasma-vault-5.14.3.tar.xz";
     };
   };
   plasma-workspace = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/plasma-workspace-5.14.0.tar.xz";
-      sha256 = "1fgz06dnszrrq5kqa3zn22cj93adz8vwg9n9vdihgi6c77rqlxyf";
-      name = "plasma-workspace-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/plasma-workspace-5.14.3.tar.xz";
+      sha256 = "0mrhlsgckin6n2njr9lmpd84qm515wfdvr4lbhs64dllmqa9c77f";
+      name = "plasma-workspace-5.14.3.tar.xz";
     };
   };
   plasma-workspace-wallpapers = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/plasma-workspace-wallpapers-5.14.0.tar.xz";
-      sha256 = "10j006wc1l2hjw9s9w7sxwimpahrnlpidnrrdgwjp0fswmnyqj5c";
-      name = "plasma-workspace-wallpapers-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/plasma-workspace-wallpapers-5.14.3.tar.xz";
+      sha256 = "09cwydr45bh367jqi31fax459pj0w4cia6y752869hcm0x55m4jb";
+      name = "plasma-workspace-wallpapers-5.14.3.tar.xz";
     };
   };
   plymouth-kcm = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/plymouth-kcm-5.14.0.tar.xz";
-      sha256 = "0smjnh3adhsbp2ds8gvi5k3jq21i85zvaf9pvr0ih4nqpn4plalk";
-      name = "plymouth-kcm-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/plymouth-kcm-5.14.3.tar.xz";
+      sha256 = "0srv7ph43hcyly69d0jydrxncc2hq8xxy0ppm6g8pdyl06q06iag";
+      name = "plymouth-kcm-5.14.3.tar.xz";
     };
   };
   polkit-kde-agent = {
-    version = "1-5.14.0";
+    version = "1-5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/polkit-kde-agent-1-5.14.0.tar.xz";
-      sha256 = "0bzz2qmxslmms7mrs4l8myg9byx0w7dz6xrmvi8v11wyk2lngsb0";
-      name = "polkit-kde-agent-1-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/polkit-kde-agent-1-5.14.3.tar.xz";
+      sha256 = "05qvwmbaj79m5myb8ah7873diflnqri2j3cwsr4y1i9wyjq2l5bw";
+      name = "polkit-kde-agent-1-5.14.3.tar.xz";
     };
   };
   powerdevil = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/powerdevil-5.14.0.tar.xz";
-      sha256 = "057hj7c3pq5a064ydx2r6kkf0q8lj7rl0jfrzcpr72s0yri3wcjr";
-      name = "powerdevil-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/powerdevil-5.14.3.tar.xz";
+      sha256 = "0css6lrb7bfm4l2piqi6cc28blw45kfxdxrn6q3d30nwb9jhsfj6";
+      name = "powerdevil-5.14.3.tar.xz";
     };
   };
   sddm-kcm = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/sddm-kcm-5.14.0.tar.xz";
-      sha256 = "0dz6iz0qf4ycfic1ad99cqxj05pa4m92m5l74as8pkqviv8mm33d";
-      name = "sddm-kcm-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/sddm-kcm-5.14.3.tar.xz";
+      sha256 = "0f25lyqrjq5kbqjh3bgxlgmfbii0nzgdf3pza8gnbmq8jfx58i5w";
+      name = "sddm-kcm-5.14.3.tar.xz";
     };
   };
   systemsettings = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/systemsettings-5.14.0.tar.xz";
-      sha256 = "0gywcc1zcqp7613gd7m9811plmmk8hr9frd2v0ari69ppm1ndmpj";
-      name = "systemsettings-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/systemsettings-5.14.3.tar.xz";
+      sha256 = "1ks6ib4n1gcmrac9q1cdas1c7xl86cvcz278anrw3ch2dfr7xppc";
+      name = "systemsettings-5.14.3.tar.xz";
     };
   };
   user-manager = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/user-manager-5.14.0.tar.xz";
-      sha256 = "17qdpdq1j53h49i71ri8f91fby9m47ngpd7gn6qp7gzsfcyqky3j";
-      name = "user-manager-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/user-manager-5.14.3.tar.xz";
+      sha256 = "043nc8nlxs6y9fqb2g574l2pjzdlklar9n5v1clrzqmxdrqva0ba";
+      name = "user-manager-5.14.3.tar.xz";
     };
   };
   xdg-desktop-portal-kde = {
-    version = "5.14.0";
+    version = "5.14.3";
     src = fetchurl {
-      url = "${mirror}/stable/plasma/5.14.0/xdg-desktop-portal-kde-5.14.0.tar.xz";
-      sha256 = "0xziyrrccv0jjjf8h8p5w2wx0qz745ilib1i2l50amy6dwy0k0s9";
-      name = "xdg-desktop-portal-kde-5.14.0.tar.xz";
+      url = "${mirror}/stable/plasma/5.14.3/xdg-desktop-portal-kde-5.14.3.tar.xz";
+      sha256 = "0g0b73ylhl6y7afdk2mxnsd809v6aby7vbw86zf82ymx23lmwg83";
+      name = "xdg-desktop-portal-kde-5.14.3.tar.xz";
     };
   };
 }

From 13892da3e76351e0a280fa390e8cb49b1b8b9265 Mon Sep 17 00:00:00 2001
From: sveitser <sveitser@gmail.com>
Date: Tue, 6 Nov 2018 21:08:36 +0800
Subject: [PATCH 0590/1129] nixos/jupyter: wait for network.target

---
 nixos/modules/services/development/jupyter/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/nixos/modules/services/development/jupyter/default.nix b/nixos/modules/services/development/jupyter/default.nix
index 9fcc00431865..f20860af6e12 100644
--- a/nixos/modules/services/development/jupyter/default.nix
+++ b/nixos/modules/services/development/jupyter/default.nix
@@ -145,6 +145,7 @@ in {
       systemd.services.jupyter = {
         description = "Jupyter development server";
 
+        after = [ "network.target" ];
         wantedBy = [ "multi-user.target" ];
 
         # TODO: Patch notebook so we can explicitly pass in a shell

From a0371d476115a8fab54186664c9cca3d19e9537f Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Tue, 6 Nov 2018 21:59:29 +0100
Subject: [PATCH 0591/1129] nixos/postgresqlBackup: set to umask to 0077

* Ensure that the backup file is only readable by the owner
* Add file permission test to tests
---
 nixos/modules/services/backup/postgresql-backup.nix | 2 ++
 nixos/tests/postgresql.nix                          | 1 +
 2 files changed, 3 insertions(+)

diff --git a/nixos/modules/services/backup/postgresql-backup.nix b/nixos/modules/services/backup/postgresql-backup.nix
index 2ec78ce6f2cf..f9f9568faa5c 100644
--- a/nixos/modules/services/backup/postgresql-backup.nix
+++ b/nixos/modules/services/backup/postgresql-backup.nix
@@ -20,6 +20,8 @@ let
       '';
 
       script = ''
+        umask 0077 # ensure backup is only readable by postgres user
+
         if [ -e ${cfg.location}/${db}.sql.gz ]; then
           ${pkgs.coreutils}/bin/mv ${cfg.location}/${db}.sql.gz ${cfg.location}/${db}.prev.sql.gz
         fi
diff --git a/nixos/tests/postgresql.nix b/nixos/tests/postgresql.nix
index f1f09277f342..d2ea0aa899f8 100644
--- a/nixos/tests/postgresql.nix
+++ b/nixos/tests/postgresql.nix
@@ -53,6 +53,7 @@ let
       # Check backup service
       $machine->succeed("systemctl start postgresqlBackup-postgres.service");
       $machine->succeed("zcat /var/backup/postgresql/postgres.sql.gz | grep '<test>ok</test>'");
+      $machine->succeed("stat -c '%a' /var/backup/postgresql/postgres.sql.gz | grep 600");
       $machine->shutdown;
     '';
 

From 91c9d5a00ae7adaad7c1e5e5663b3d98d86d507f Mon Sep 17 00:00:00 2001
From: Reuben D'Netto <rdnetto@atlassian.com>
Date: Mon, 5 Nov 2018 12:19:05 +1100
Subject: [PATCH 0592/1129] humanize: loosen platform restriction to include
 OSX

---
 pkgs/development/python-modules/humanize/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/humanize/default.nix b/pkgs/development/python-modules/humanize/default.nix
index 25c335c0016f..f1fac28dd939 100644
--- a/pkgs/development/python-modules/humanize/default.nix
+++ b/pkgs/development/python-modules/humanize/default.nix
@@ -22,7 +22,7 @@ buildPythonPackage rec {
     homepage = https://github.com/jmoiron/humanize;
     license = licenses.mit;
     maintainers = with maintainers; [ ];
-    platforms = platforms.linux; # can only test on linux
+    platforms = platforms.unix;
   };
 
 }

From 9a1a872b4a2244e05b7f2705bd090953746bcdab Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Wed, 7 Nov 2018 00:53:29 +0100
Subject: [PATCH 0593/1129] qt5.qtbase: add cf-private on darwin

    Undefined symbols for architecture x86_64:
      "_OBJC_CLASS_$_NSDate", referenced from:
          objc-class-ref in qcore_foundation.o
      "_OBJC_CLASS_$_NSURL", referenced from:
          objc-class-ref in qcore_foundation.o
      "_OBJC_CLASS_$_NSData", referenced from:
          objc-class-ref in qcore_foundation.o
      "_CFURLCopyResourcePropertyForKey", referenced from:
          hasResourcePropertyFlag(QFileSystemMetaData const&, QFileSystemEntry const&, __CFString const*) in qfilesystemengine_unix.o
      "_CFURLCreateBookmarkDataFromFile", referenced from:
          QFileSystemEngine::getLinkTarget(QFileSystemEntry const&, QFileSystemMetaData&) in qfilesystemengine_unix.o
      "_kCFURLIsAliasFileKey", referenced from:
          QFileSystemEngine::fillMetaData(QFileSystemEntry const&, QFileSystemMetaData&, QFlags<QFileSystemMetaData::MetaDataFlag>) in qfilesystemengine_unix.o
      "_kCFURLIsHiddenKey", referenced from:
          QFileSystemEngine::fillMetaData(QFileSystemEntry const&, QFileSystemMetaData&, QFlags<QFileSystemMetaData::MetaDataFlag>) in qfilesystemengine_unix.o
      "_kCFURLIsPackageKey", referenced from:
          QFileSystemEngine::fillMetaData(QFileSystemEntry const&, QFileSystemMetaData&, QFlags<QFileSystemMetaData::MetaDataFlag>) in qfilesystemengine_unix.o
      "_CFURLCreateByResolvingBookmarkData", referenced from:
          QFileSystemEngine::getLinkTarget(QFileSystemEntry const&, QFileSystemMetaData&) in qfilesystemengine_unix.o
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/development/libraries/qt-5/modules/qtbase.nix | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/pkgs/development/libraries/qt-5/modules/qtbase.nix b/pkgs/development/libraries/qt-5/modules/qtbase.nix
index 0d9cb81afda9..b8511533a799 100644
--- a/pkgs/development/libraries/qt-5/modules/qtbase.nix
+++ b/pkgs/development/libraries/qt-5/modules/qtbase.nix
@@ -53,6 +53,7 @@ stdenv.mkDerivation {
       if stdenv.isDarwin
       then with darwin.apple_sdk.frameworks;
         [
+          # TODO: move to buildInputs, this should not be propagated.
           AGL AppKit ApplicationServices Carbon Cocoa CoreAudio CoreBluetooth
           CoreLocation CoreServices DiskArbitration Foundation OpenGL
           darwin.libobjc libiconv
@@ -77,6 +78,9 @@ stdenv.mkDerivation {
       [ libinput ]
       ++ lib.optional withGtk3 gtk3
     )
+    ++ lib.optional stdenv.isDarwin
+      # Needed for OBJC_CLASS_$_NSDate symbols.
+      [ darwin.cf-private ]
     ++ lib.optional developerBuild gdb
     ++ lib.optional (cups != null) cups
     ++ lib.optional (mysql != null) mysql.connector-c

From 5e7edaa0a98774a696e61e9690992abf90e731f2 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?L=C3=A9o=20Gaspard?= <leo@gaspard.io>
Date: Wed, 7 Nov 2018 09:56:21 +0900
Subject: [PATCH 0594/1129] opensmtpd: 6.4.0p1 -> 6.4.0p2

---
 pkgs/servers/mail/opensmtpd/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/mail/opensmtpd/default.nix b/pkgs/servers/mail/opensmtpd/default.nix
index 236e1dba181e..0ee1c92acbdc 100644
--- a/pkgs/servers/mail/opensmtpd/default.nix
+++ b/pkgs/servers/mail/opensmtpd/default.nix
@@ -4,14 +4,14 @@
 
 stdenv.mkDerivation rec {
   name = "opensmtpd-${version}";
-  version = "6.4.0p1";
+  version = "6.4.0p2";
 
   nativeBuildInputs = [ autoconf automake libtool bison ];
   buildInputs = [ libasr libevent zlib libressl db pam ];
 
   src = fetchurl {
     url = "https://www.opensmtpd.org/archives/${name}.tar.gz";
-    sha256 = "1qxxhnlsmpfh9v4azgl0634955r085gsic1c66jdll21bd5w2mq8";
+    sha256 = "1y7snhsrcdi56vaa23iwjpybhyrnnh2f6dxrfnacn7xgy5xwzbvn";
   };
 
   patches = [

From 147ff753f5001e09f0d5962f99e7cacde3f897f2 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Tue, 6 Nov 2018 19:58:20 -0600
Subject: [PATCH 0595/1129] shadowsocks-libev: set install name correctly

This avoids having to invoke install_name_tool.
---
 .../networking/shadowsocks-libev/default.nix   | 18 +++---------------
 1 file changed, 3 insertions(+), 15 deletions(-)

diff --git a/pkgs/tools/networking/shadowsocks-libev/default.nix b/pkgs/tools/networking/shadowsocks-libev/default.nix
index 09fa69dd37c4..27c4590f88b8 100644
--- a/pkgs/tools/networking/shadowsocks-libev/default.nix
+++ b/pkgs/tools/networking/shadowsocks-libev/default.nix
@@ -16,27 +16,15 @@ stdenv.mkDerivation rec {
   };
 
   buildInputs = [ libsodium mbedtls libev c-ares pcre ];
-  nativeBuildInputs = [ cmake asciidoc xmlto docbook_xml_dtd_45 docbook_xsl libxslt ];
+  nativeBuildInputs = [ cmake asciidoc xmlto docbook_xml_dtd_45
+                        docbook_xsl libxslt ];
 
-  cmakeFlags = [ "-DWITH_STATIC=OFF" ];
+  cmakeFlags = [ "-DWITH_STATIC=OFF"  "-DCMAKE_BUILD_WITH_INSTALL_NAME_DIR=ON" ];
 
   postInstall = ''
     cp lib/* $out/lib
     chmod +x $out/bin/*
     mv $out/pkgconfig $out/lib
-
-    ${stdenv.lib.optionalString stdenv.isDarwin ''
-      install_name_tool -change libcork.dylib $out/lib/libcork.dylib $out/lib/libipset.dylib
-      install_name_tool -change libbloom.dylib $out/lib/libbloom.dylib $out/lib/libipset.dylib
-
-      for exe in $out/bin/*; do
-        install_name_tool -change libmbedtls.dylib ${mbedtls}/lib/libmbedtls.dylib $exe
-        install_name_tool -change libmbedcrypto.dylib ${mbedtls}/lib/libmbedcrypto.dylib $exe
-        install_name_tool -change libcork.dylib $out/lib/libcork.dylib $exe
-        install_name_tool -change libipset.dylib $out/lib/libipset.dylib $exe
-        install_name_tool -change libbloom.dylib $out/lib/libbloom.dylib $exe
-      done
-    ''}
   '';
 
   meta = with stdenv.lib; {

From 8511f045b723b27e0a3549d815002cd114669400 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Tue, 6 Nov 2018 20:00:26 -0600
Subject: [PATCH 0596/1129] clucene-core: fix install name

---
 pkgs/development/libraries/clucene-core/2.x.nix | 16 ++++++++--------
 1 file changed, 8 insertions(+), 8 deletions(-)

diff --git a/pkgs/development/libraries/clucene-core/2.x.nix b/pkgs/development/libraries/clucene-core/2.x.nix
index a14dec370479..004c01a5b69e 100644
--- a/pkgs/development/libraries/clucene-core/2.x.nix
+++ b/pkgs/development/libraries/clucene-core/2.x.nix
@@ -12,7 +12,11 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ boost zlib ];
 
-  cmakeFlags = [ "-DBUILD_CONTRIBS=ON" "-DBUILD_CONTRIBS_LIB=ON" ];
+  cmakeFlags = [
+    "-DBUILD_CONTRIBS=ON"
+    "-DBUILD_CONTRIBS_LIB=ON"
+    "-DCMAKE_BUILD_WITH_INSTALL_NAME_DIR=ON"
+  ];
 
   patches = # From debian
     [ ./Fix-pkgconfig-file-by-adding-clucene-shared-library.patch
@@ -20,13 +24,9 @@ stdenv.mkDerivation rec {
       ./Install-contribs-lib.patch
     ] ++ stdenv.lib.optionals stdenv.isDarwin [ ./fix-darwin.patch ];
 
-  postInstall = stdenv.lib.optionalString stdenv.isDarwin ''
-    install_name_tool -change libclucene-shared.1.dylib \
-        $out/lib/libclucene-shared.1.dylib \
-        $out/lib/libclucene-core.1.dylib
-  '';
-
-  doCheck = false; # fails with "Unable to find executable: /build/clucene-core-2.3.3.4/build/bin/cl_test"
+  # fails with "Unable to find executable:
+  # /build/clucene-core-2.3.3.4/build/bin/cl_test"
+  doCheck = false;
 
   meta = with stdenv.lib; {
     description = "Core library for full-featured text search engine";

From 797e0d84a180dd24b7572ffef9a52677860970cb Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Tue, 6 Nov 2018 20:01:21 -0600
Subject: [PATCH 0597/1129] podofo: cleanup

---
 pkgs/development/libraries/podofo/default.nix | 22 +++++++------------
 1 file changed, 8 insertions(+), 14 deletions(-)

diff --git a/pkgs/development/libraries/podofo/default.nix b/pkgs/development/libraries/podofo/default.nix
index 1704703f8012..9ddb70c7a8c5 100644
--- a/pkgs/development/libraries/podofo/default.nix
+++ b/pkgs/development/libraries/podofo/default.nix
@@ -12,8 +12,6 @@ stdenv.mkDerivation rec {
     sha256 = "0wj0y4zcmj4q79wrn3vv3xq4bb0vhhxs8yifafwy9f2sjm83c5p9";
   };
 
-  propagatedBuildInputs = [ zlib freetype libjpeg libtiff fontconfig openssl libpng libidn expat ];
-
   patches = [
     # https://sourceforge.net/p/podofo/tickets/24/
     (fetchpatch {
@@ -23,20 +21,16 @@ stdenv.mkDerivation rec {
     })
   ];
 
-  # TODO(@Dridus) remove the ++ ghc5 at next hash break
-  nativeBuildInputs = [ cmake pkgconfig ] ++ stdenv.lib.optional stdenv.isLinux gcc5;
+  nativeBuildInputs = [ cmake pkgconfig ];
 
-  # TODO(@Dridus) remove the ++ libc at next hash break
-  buildInputs = [ lua5 ] ++ stdenv.lib.optional stdenv.isLinux stdenv.cc.libc;
-
-  cmakeFlags = "-DPODOFO_BUILD_SHARED=ON -DPODOFO_BUILD_STATIC=OFF";
-
-  postFixup = stdenv.lib.optionalString stdenv.isDarwin ''
-    for i in $out/bin/* ; do
-      install_name_tool -change libpodofo.${version}.dylib $out/lib/libpodofo.${version}.dylib "$i"
-    done
-  '';
+  buildInputs = [ zlib freetype libjpeg libtiff fontconfig openssl libpng
+                  libidn expat lua5 ];
 
+  cmakeFlags = [
+    "-DPODOFO_BUILD_SHARED=ON"
+    "-DPODOFO_BUILD_STATIC=OFF"
+    "-DCMAKE_BUILD_WITH_INSTALL_NAME_DIR=ON"
+  ];
   meta = with stdenv.lib; {
     homepage = http://podofo.sourceforge.net;
     description = "A library to work with the PDF file format";

From fada4e87b88058682e975863479909c230728799 Mon Sep 17 00:00:00 2001
From: Samuel Dionne-Riel <samuel@dionne-riel.com>
Date: Tue, 6 Nov 2018 21:59:47 -0500
Subject: [PATCH 0598/1129] dbeaver: 5.2.2 -> 5.2.4

---
 pkgs/applications/misc/dbeaver/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/dbeaver/default.nix b/pkgs/applications/misc/dbeaver/default.nix
index 412a2e9d4fd0..f7c1990ef3c8 100644
--- a/pkgs/applications/misc/dbeaver/default.nix
+++ b/pkgs/applications/misc/dbeaver/default.nix
@@ -7,7 +7,7 @@
 
 stdenv.mkDerivation rec {
   name = "dbeaver-ce-${version}";
-  version = "5.2.2";
+  version = "5.2.4";
 
   desktopItem = makeDesktopItem {
     name = "dbeaver";
@@ -30,7 +30,7 @@ stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "https://dbeaver.io/files/${version}/dbeaver-ce-${version}-linux.gtk.x86_64.tar.gz";
-    sha256 = "1rrj0c7ksvv9irsz9hb4ip30qgmzps4dy1nj4vl8mzzf389xa43n";
+    sha256 = "1zwbqr5s76r77x7klydpqbaqakzzilzv92ddyck1sj5jiy5prwpp";
   };
 
   installPhase = ''

From 13e1235a802460219c9c8edddbd5ebbe2cb3c978 Mon Sep 17 00:00:00 2001
From: Andrew Dunham <andrew@du.nham.ca>
Date: Tue, 6 Nov 2018 21:13:03 -0800
Subject: [PATCH 0599/1129] calibre: remove references to podofo

---
 pkgs/applications/misc/calibre/default.nix    | 17 +++++++++++++----
 pkgs/development/libraries/podofo/default.nix |  7 +++++++
 2 files changed, 20 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/misc/calibre/default.nix b/pkgs/applications/misc/calibre/default.nix
index 1ad236f0d13f..3554c36f5194 100644
--- a/pkgs/applications/misc/calibre/default.nix
+++ b/pkgs/applications/misc/calibre/default.nix
@@ -1,7 +1,7 @@
 { stdenv, fetchurl, poppler_utils, pkgconfig, libpng
 , imagemagick, libjpeg, fontconfig, podofo, qtbase, qmake, icu, sqlite
 , makeWrapper, unrarSupport ? false, chmlib, python2Packages, libusb1, libmtp
-, xdg_utils, makeDesktopItem, wrapGAppsHook
+, xdg_utils, makeDesktopItem, wrapGAppsHook, removeReferencesTo
 }:
 
 stdenv.mkDerivation rec {
@@ -35,7 +35,7 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
-  nativeBuildInputs = [ makeWrapper pkgconfig qmake ];
+  nativeBuildInputs = [ makeWrapper pkgconfig qmake removeReferencesTo ];
 
   buildInputs = [
     poppler_utils libpng imagemagick libjpeg
@@ -58,8 +58,8 @@ stdenv.mkDerivation rec {
     export MAGICK_LIB=${imagemagick.out}/lib
     export FC_INC_DIR=${fontconfig.dev}/include/fontconfig
     export FC_LIB_DIR=${fontconfig.lib}/lib
-    export PODOFO_INC_DIR=${podofo}/include/podofo
-    export PODOFO_LIB_DIR=${podofo}/lib
+    export PODOFO_INC_DIR=${podofo.dev}/include/podofo
+    export PODOFO_LIB_DIR=${podofo.lib}/lib
     export SIP_BIN=${python2Packages.sip}/bin/sip
     ${python2Packages.python.interpreter} setup.py install --prefix=$out
 
@@ -88,6 +88,15 @@ stdenv.mkDerivation rec {
     runHook postInstall
   '';
 
+  # Remove some references to shrink the closure size. This reference (as of
+  # 2018-11-06) was a single string like the following:
+  #   /nix/store/xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx-podofo-0.9.6-dev/include/podofo/base/PdfVariant.h
+  preFixup = ''
+    remove-references-to -t ${podofo.dev} $out/lib/calibre/calibre/plugins/podofo.so
+  '';
+
+  disallowedReferences = [ podofo.dev ];
+
   calibreDesktopItem = makeDesktopItem {
     name = "calibre";
     desktopName = "calibre";
diff --git a/pkgs/development/libraries/podofo/default.nix b/pkgs/development/libraries/podofo/default.nix
index 9ddb70c7a8c5..ce3f5ab6b789 100644
--- a/pkgs/development/libraries/podofo/default.nix
+++ b/pkgs/development/libraries/podofo/default.nix
@@ -21,6 +21,8 @@ stdenv.mkDerivation rec {
     })
   ];
 
+  outputs = [ "out" "dev" "lib" ];
+
   nativeBuildInputs = [ cmake pkgconfig ];
 
   buildInputs = [ zlib freetype libjpeg libtiff fontconfig openssl libpng
@@ -31,6 +33,11 @@ stdenv.mkDerivation rec {
     "-DPODOFO_BUILD_STATIC=OFF"
     "-DCMAKE_BUILD_WITH_INSTALL_NAME_DIR=ON"
   ];
+
+  postInstall = ''
+    moveToOutput lib "$lib"
+  '';
+
   meta = with stdenv.lib; {
     homepage = http://podofo.sourceforge.net;
     description = "A library to work with the PDF file format";

From 21dfccd93d9283cde2395814b910007fbc38e07b Mon Sep 17 00:00:00 2001
From: rnhmjoj <rnhmjoj@inventati.org>
Date: Wed, 7 Nov 2018 08:32:03 +0100
Subject: [PATCH 0600/1129] nixos/manual: move syncthing notice in the right
 position

---
 nixos/doc/manual/release-notes/rl-1903.xml | 20 ++++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

diff --git a/nixos/doc/manual/release-notes/rl-1903.xml b/nixos/doc/manual/release-notes/rl-1903.xml
index a3cfa7784996..a0d0b40748c7 100644
--- a/nixos/doc/manual/release-notes/rl-1903.xml
+++ b/nixos/doc/manual/release-notes/rl-1903.xml
@@ -97,18 +97,18 @@
        start org.nixos.nix-daemon</command>.
       </para>
      </listitem>
-     <listitem>
-      <para>
-        The Syncthing state and configuration data has been moved from
-        <varname>services.syncthing.dataDir</varname> to the newly defined
-        <varname>services.syncthing.configDir</varname>, which default to
-        <literal>/var/lib/syncthing/.config/syncthing</literal>.
-        This change makes possible to share synced directories using ACLs
-        without Syncthing resetting the permission on every start.
-      </para>
-     </listitem>
     </itemizedlist>
    </listitem>
+   <listitem>
+    <para>
+      The Syncthing state and configuration data has been moved from
+      <varname>services.syncthing.dataDir</varname> to the newly defined
+      <varname>services.syncthing.configDir</varname>, which default to
+      <literal>/var/lib/syncthing/.config/syncthing</literal>.
+      This change makes possible to share synced directories using ACLs
+      without Syncthing resetting the permission on every start.
+    </para>
+   </listitem>
    <listitem>
     <para>
      Package <varname>rabbitmq_server</varname> is renamed to

From 5fc73fd52e7e9aa56911d152e3a5c49de8a18f61 Mon Sep 17 00:00:00 2001
From: aszlig <aszlig@nix.build>
Date: Wed, 7 Nov 2018 09:42:17 +0100
Subject: [PATCH 0601/1129] ip2unix: 1.0.0 -> 1.1.0

Upstream fixes:

  * Prevent closing file descriptors passed by systemd.

New upstream features:

  * Allow to specify port ranges.

Signed-off-by: aszlig <aszlig@nix.build>
---
 pkgs/tools/networking/ip2unix/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/networking/ip2unix/default.nix b/pkgs/tools/networking/ip2unix/default.nix
index 14f8599f7e97..57f1cf564f2c 100644
--- a/pkgs/tools/networking/ip2unix/default.nix
+++ b/pkgs/tools/networking/ip2unix/default.nix
@@ -4,13 +4,13 @@
 
 stdenv.mkDerivation rec {
   name = "ip2unix-${version}";
-  version = "1.0.0";
+  version = "1.1.0";
 
   src = fetchFromGitHub {
     owner = "nixcloud";
     repo = "ip2unix";
     rev = "v${version}";
-    sha256 = "1s6gyrrzgifr6gagcw4vx9xznxvdl14y14r0d1xc72j69b00zc4q";
+    sha256 = "11scvwbnwivvsp2c9vfwzgmd3gprnhj9y170594bc3iisbdlj69k";
   };
 
   nativeBuildInputs = [

From 794158fcd54b862f3775bc8b54495a842a250b7b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Th=C3=A9o=20Zimmermann?=
 <theo.zimmermann@univ-paris-diderot.fr>
Date: Mon, 5 Nov 2018 11:21:46 +0100
Subject: [PATCH 0602/1129] buildDunePackage: new support function; use it to
 refactor some OCaml derivations

---
 pkgs/build-support/ocaml/dune.nix             |  24 +++
 .../ocaml-modules/angstrom/default.nix        |  27 +--
 .../development/ocaml-modules/atd/default.nix |  14 +-
 .../ocaml-modules/bigstringaf/default.nix     |  21 +--
 .../ocaml-modules/biniou/default.nix          |  14 +-
 .../ocaml-modules/bitstring/default.nix       |  21 +--
 .../ocaml-modules/camlimages/default.nix      |  17 +-
 .../ocaml-modules/camomile/default.nix        |  15 +-
 .../ocaml-modules/cohttp/default.nix          |  13 +-
 .../ocaml-modules/cohttp/lwt-unix.nix         |  12 +-
 pkgs/development/ocaml-modules/cohttp/lwt.nix |  12 +-
 .../ocaml-modules/conduit/default.nix         |  13 +-
 .../ocaml-modules/conduit/lwt-unix.nix        |  12 +-
 .../development/ocaml-modules/conduit/lwt.nix |  12 +-
 .../ocaml-modules/cstruct/default.nix         |  14 +-
 .../development/ocaml-modules/cstruct/lwt.nix |  12 +-
 .../development/ocaml-modules/cstruct/ppx.nix |  14 +-
 .../ocaml-modules/cstruct/unix.nix            |  12 +-
 .../development/ocaml-modules/csv/default.nix |  16 +-
 .../ocaml-modules/doc-ock-html/default.nix    |  13 +-
 .../ocaml-modules/doc-ock-xml/default.nix     |  13 +-
 .../ocaml-modules/doc-ock/default.nix         |  13 +-
 .../ocaml-modules/dtoa/default.nix            |  16 +-
 .../ocaml-modules/ezjsonm/default.nix         |  17 +-
 .../ocaml-modules/ezxmlm/default.nix          |  15 +-
 .../ocaml-modules/faraday/default.nix         |  23 +--
 .../ocaml-modules/gapi-ocaml/default.nix      |  20 +--
 .../ocaml-modules/git-http/default.nix        |  19 +-
 .../ocaml-modules/git-unix/default.nix        |  18 +-
 .../development/ocaml-modules/git/default.nix |  16 +-
 .../development/ocaml-modules/hex/default.nix |  21 +--
 .../ocaml-modules/httpaf/default.nix          |  19 +-
 .../ocaml-modules/io-page/default.nix         |  16 +-
 .../ocaml-modules/ipaddr/default.nix          |  13 +-
 .../ocaml-modules/janestreet/default.nix      | 166 +++++++++---------
 .../ocaml-modules/janestreet/janePackage.nix  |  25 +--
 .../ocaml-modules/janestreet/old.nix          | 160 ++++++++---------
 .../ocaml-modules/lambda-term/default.nix     |  22 +--
 .../ocaml-modules/linenoise/default.nix       |  19 +-
 pkgs/development/ocaml-modules/lwt/4.x.nix    |  20 +--
 pkgs/development/ocaml-modules/lwt/ppx.nix    |  16 +-
 .../ocaml-modules/lwt_log/default.nix         |  21 +--
 .../ocaml-modules/lwt_react/default.nix       |   3 +-
 .../ocaml-modules/lwt_ssl/default.nix         |  18 +-
 .../ocaml-modules/mstruct/default.nix         |  21 +--
 .../ocaml-migrate-parsetree/default.nix       |  16 +-
 .../ocaml-modules/odoc/default.nix            |  16 +-
 .../ocaml-modules/ppx_blob/default.nix        |  18 +-
 .../ocaml-modules/ppx_derivers/default.nix    |  19 +-
 .../ocaml-modules/ppx_gen_rec/default.nix     |  16 +-
 .../ocaml-modules/ppxlib/default.nix          |  16 +-
 pkgs/development/ocaml-modules/re/default.nix |  19 +-
 .../ocaml-modules/sequence/default.nix        |  21 +--
 .../ocaml-modules/sqlexpr/default.nix         |  16 +-
 .../development/ocaml-modules/sqlexpr/ppx.nix |  14 +-
 .../development/ocaml-modules/uri/default.nix |  17 +-
 .../ocaml-modules/wtf8/default.nix            |  16 +-
 .../development/ocaml-modules/zmq/default.nix |  15 +-
 pkgs/development/ocaml-modules/zmq/lwt.nix    |  12 +-
 .../tools/ocaml/merlin/default.nix            |  16 +-
 .../tools/ocaml/ocaml-top/default.nix         |  18 +-
 .../tools/ocaml/ocamlformat/default.nix       |  27 +--
 pkgs/tools/misc/patdiff/default.nix           |   2 +-
 pkgs/top-level/ocaml-packages.nix             |   2 +
 64 files changed, 506 insertions(+), 828 deletions(-)
 create mode 100644 pkgs/build-support/ocaml/dune.nix

diff --git a/pkgs/build-support/ocaml/dune.nix b/pkgs/build-support/ocaml/dune.nix
new file mode 100644
index 000000000000..8fda4d76c43c
--- /dev/null
+++ b/pkgs/build-support/ocaml/dune.nix
@@ -0,0 +1,24 @@
+{ stdenv, fetchurl, ocaml, findlib, dune }:
+
+{ pname, version, buildInputs ? [], ... }@args:
+
+if args ? minimumOCamlVersion &&
+   ! stdenv.lib.versionAtLeast ocaml.version args.minimumOCamlVersion
+then throw "${pname}-${version} is not available for OCaml ${ocaml.version}"
+else
+
+stdenv.mkDerivation ({
+
+  buildPhase = "dune build -p ${pname}";
+  checkPhase = "dune runtest -p ${pname}";
+  inherit (dune) installPhase;
+
+  meta.platform = ocaml.meta.platform;
+
+} // args // {
+
+  name = "ocaml${ocaml.version}-${pname}-${version}";
+
+  buildInputs = [ ocaml dune findlib ] ++ buildInputs;
+
+})
diff --git a/pkgs/development/ocaml-modules/angstrom/default.nix b/pkgs/development/ocaml-modules/angstrom/default.nix
index 0c00dc2ff24e..2bb717168ad7 100644
--- a/pkgs/development/ocaml-modules/angstrom/default.nix
+++ b/pkgs/development/ocaml-modules/angstrom/default.nix
@@ -1,37 +1,26 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune, alcotest, result
-, bigstringaf
-}:
+{ stdenv, fetchFromGitHub, buildDunePackage, alcotest, result, bigstringaf }:
 
-if !stdenv.lib.versionAtLeast ocaml.version "4.03"
-then throw "angstrom is not available for OCaml ${ocaml.version}"
-else
-
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+  pname = "angstrom";
   version = "0.10.0";
-  name = "ocaml${ocaml.version}-angstrom-${version}";
+
+  minimumOCamlVersion = "4.03";
 
   src = fetchFromGitHub {
     owner  = "inhabitedtype";
-    repo   = "angstrom";
-    rev    = "${version}";
+    repo   = pname;
+    rev    = version;
     sha256 = "0lh6024yf9ds0nh9i93r9m6p5psi8nvrqxl5x7jwl13zb0r9xfpw";
   };
 
-  buildInputs = [ ocaml findlib dune alcotest ];
+  buildInputs = [ alcotest ];
   propagatedBuildInputs = [ bigstringaf result ];
-
-  buildPhase = "dune build -p angstrom";
-
   doCheck = true;
-  checkPhase = "dune runtest -p angstrom";
-
-  inherit (dune) installPhase;
 
   meta = {
     homepage = https://github.com/inhabitedtype/angstrom;
     description = "OCaml parser combinators built for speed and memory efficiency";
     license = stdenv.lib.licenses.bsd3;
     maintainers = with stdenv.lib.maintainers; [ sternenseemann ];
-    inherit (ocaml.meta) platforms;
   };
 }
diff --git a/pkgs/development/ocaml-modules/atd/default.nix b/pkgs/development/ocaml-modules/atd/default.nix
index d5cd38bba728..e3e056f54426 100644
--- a/pkgs/development/ocaml-modules/atd/default.nix
+++ b/pkgs/development/ocaml-modules/atd/default.nix
@@ -1,25 +1,21 @@
-{ stdenv, menhir, easy-format, ocaml, findlib, fetchFromGitHub, dune, which, biniou, yojson }:
+{ stdenv, menhir, easy-format, fetchFromGitHub, buildDunePackage, which, biniou, yojson }:
 
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+  pname = "atd";
   version = "2.0.0";
 
-  name = "ocaml${ocaml.version}-atd-${version}";
-
   src = fetchFromGitHub {
     owner = "mjambon";
-    repo = "atd";
+    repo = pname;
     rev = version;
     sha256 = "0alzmk97rxg7s6irs9lvf89dy9n3r769my5n4j9p9qyigcdgjaia";
   };
 
   createFindlibDestdir = true;
 
-  buildInputs = [ which dune ocaml findlib menhir ];
+  buildInputs = [ which menhir ];
   propagatedBuildInputs = [ easy-format biniou yojson ];
 
-  buildPhase = "jbuilder build";
-  inherit (dune) installPhase;
-
   meta = with stdenv.lib; {
     homepage = https://github.com/mjambon/atd;
     description = "Syntax for cross-language type definitions";
diff --git a/pkgs/development/ocaml-modules/bigstringaf/default.nix b/pkgs/development/ocaml-modules/bigstringaf/default.nix
index fc9a5379b178..762e675d51ce 100644
--- a/pkgs/development/ocaml-modules/bigstringaf/default.nix
+++ b/pkgs/development/ocaml-modules/bigstringaf/default.nix
@@ -1,32 +1,25 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune, alcotest }:
+{ stdenv, fetchFromGitHub, buildDunePackage, alcotest }:
 
-if !stdenv.lib.versionAtLeast ocaml.version "4.03"
-then throw "bigstringaf is not available for OCaml ${ocaml.version}"
-else
-
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+  pname = "bigstringaf";
   version = "0.3.0";
-  name = "ocaml${ocaml.version}-bigstringaf-${version}";
+
+  minimumOCamlVersion = "4.03";
 
   src = fetchFromGitHub {
     owner = "inhabitedtype";
-    repo = "bigstringaf";
+    repo = pname;
     rev = version;
     sha256 = "1yx6hv8rk0ldz1h6kk00rwg8abpfc376z00aifl9f5rn7xavpscs";
   };
 
-  buildInputs = [ ocaml findlib dune alcotest ];
-
+  buildInputs = [ alcotest ];
   doCheck = true;
-  checkPhase = "dune runtest";
-
-  inherit (dune) installPhase;
 
   meta = {
     description = "Bigstring intrinsics and fast blits based on memcpy/memmove";
     license = stdenv.lib.licenses.bsd3;
     maintainers = [ stdenv.lib.maintainers.vbgl ];
     inherit (src.meta) homepage;
-    inherit (ocaml.meta) platforms;
   };
 }
diff --git a/pkgs/development/ocaml-modules/biniou/default.nix b/pkgs/development/ocaml-modules/biniou/default.nix
index 439fce3bfd5b..8f1917d68738 100644
--- a/pkgs/development/ocaml-modules/biniou/default.nix
+++ b/pkgs/development/ocaml-modules/biniou/default.nix
@@ -1,28 +1,24 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune, easy-format }:
+{ stdenv, fetchFromGitHub, buildDunePackage, easy-format }:
 
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+  pname = "biniou";
   version = "1.2.0";
-  name = "ocaml${ocaml.version}-biniou-${version}";
+
   src = fetchFromGitHub {
     owner = "mjambon";
-    repo = "biniou";
+    repo = pname;
     rev = "v${version}";
     sha256 = "0mjpgwyfq2b2izjw0flmlpvdjgqpq8shs89hxj1np2r50csr8dcb";
   };
 
-  buildInputs = [ ocaml findlib dune ];
-
   propagatedBuildInputs = [ easy-format ];
 
   postPatch = ''
    patchShebangs .
   '';
 
-  inherit (dune) installPhase;
-
   meta = {
     inherit (src.meta) homepage;
-    inherit (ocaml.meta) platforms;
     description = "Binary data format designed for speed, safety, ease of use and backward compatibility as protocols evolve";
     maintainers = [ stdenv.lib.maintainers.vbgl ];
     license = stdenv.lib.licenses.bsd3;
diff --git a/pkgs/development/ocaml-modules/bitstring/default.nix b/pkgs/development/ocaml-modules/bitstring/default.nix
index 93bcb3cb1e99..3d1a554b3307 100644
--- a/pkgs/development/ocaml-modules/bitstring/default.nix
+++ b/pkgs/development/ocaml-modules/bitstring/default.nix
@@ -1,31 +1,22 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune
-, ppx_tools_versioned
-, ounit
-}:
+{ stdenv, fetchFromGitHub, buildDunePackage, ppx_tools_versioned, ounit }:
 
-stdenv.mkDerivation rec {
-  name = "ocaml${ocaml.version}-bitstring-${version}";
+buildDunePackage rec {
+  pname = "bitstring";
   version = "3.0.0";
+
   src = fetchFromGitHub {
     owner = "xguerin";
-    repo = "bitstring";
+    repo = pname;
     rev = "v${version}";
     sha256 = "0r49qax7as48jgknzaq6p9rbpmrvnmlic713wzz5bj60j5h0396f";
   };
 
-  buildInputs = [ ocaml findlib dune ppx_tools_versioned ounit ];
-
-  buildPhase = "jbuilder build";
-
+  buildInputs = [ ppx_tools_versioned ounit ];
   doCheck = true;
-  checkPhase = "jbuilder runtest";
-
-  inherit (dune) installPhase;
 
   meta = with stdenv.lib; {
     description = "This library adds Erlang-style bitstrings and matching over bitstrings as a syntax extension and library for OCaml";
     homepage = https://github.com/xguerin/bitstring;
-    inherit (ocaml.meta) platforms;
     license = licenses.lgpl21Plus;
     maintainers = [ maintainers.maurer ];
   };
diff --git a/pkgs/development/ocaml-modules/camlimages/default.nix b/pkgs/development/ocaml-modules/camlimages/default.nix
index b5ef173c9ff8..065c5a650b84 100644
--- a/pkgs/development/ocaml-modules/camlimages/default.nix
+++ b/pkgs/development/ocaml-modules/camlimages/default.nix
@@ -1,15 +1,16 @@
-{ stdenv, fetchzip, findlib, dune, ocaml, configurator, cppo, lablgtk }:
-stdenv.mkDerivation rec {
-  name = "camlimages-${version}";
+{ stdenv, fetchzip, buildDunePackage, configurator, cppo, lablgtk }:
+
+buildDunePackage rec {
+  pname = "camlimages";
   version = "5.0.0";
+
   src = fetchzip {
-    url = "https://bitbucket.org/camlspotter/camlimages/get/${version}.tar.gz";
+    url = "https://bitbucket.org/camlspotter/${pname}/get/${version}.tar.gz";
     sha256 = "00qvwxkfnhv93yi1iq7vy3p5lxyi9xigxcq464s4ii6bmp32d998";
   };
-  buildInputs = [ findlib dune ocaml configurator cppo lablgtk ];
-  buildPhase = "dune build -p camlimages";
-  inherit (dune) installPhase;
-  
+
+  buildInputs = [ configurator cppo lablgtk ];
+
   meta = with stdenv.lib; {
     branch = "5.0";
     homepage = https://bitbucket.org/camlspotter/camlimages;
diff --git a/pkgs/development/ocaml-modules/camomile/default.nix b/pkgs/development/ocaml-modules/camomile/default.nix
index 5e156776f860..f21e7643afe9 100644
--- a/pkgs/development/ocaml-modules/camomile/default.nix
+++ b/pkgs/development/ocaml-modules/camomile/default.nix
@@ -1,24 +1,21 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune, cppo }:
+{ stdenv, fetchFromGitHub, buildDunePackage, cppo }:
 
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+  pname = "camomile";
 	version = "1.0.1";
-	name = "ocaml${ocaml.version}-camomile-${version}";
 
 	src = fetchFromGitHub {
 		owner = "yoriyuki";
-		repo = "camomile";
-		rev = "${version}";
+		repo = pname;
+		rev = version;
 		sha256 = "1pfxr9kzkpd5bsdqrpxasfxkawwkg4cpx3m1h6203sxi7qv1z3fn";
 	};
 
-	buildInputs = [ ocaml findlib dune cppo ];
+	buildInputs = [ cppo ];
 
 	configurePhase = "ocaml configure.ml --share $out/share/camomile";
 
-	inherit (dune) installPhase;
-
 	meta = {
-		inherit (ocaml.meta) platforms;
 		inherit (src.meta) homepage;
 		maintainers = [ stdenv.lib.maintainers.vbgl ];
 		license = stdenv.lib.licenses.lgpl21;
diff --git a/pkgs/development/ocaml-modules/cohttp/default.nix b/pkgs/development/ocaml-modules/cohttp/default.nix
index 0508f2b74f75..0110ea0223cb 100644
--- a/pkgs/development/ocaml-modules/cohttp/default.nix
+++ b/pkgs/development/ocaml-modules/cohttp/default.nix
@@ -1,11 +1,11 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune
+{ stdenv, fetchFromGitHub, buildDunePackage
 , ppx_fields_conv, ppx_sexp_conv, ppx_deriving
 , base64, fieldslib, jsonm, re, stringext, uri
 }:
 
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+  pname = "cohttp";
 	version = "1.1.1";
-	name = "ocaml${ocaml.version}-cohttp-${version}";
 
 	src = fetchFromGitHub {
 		owner = "mirage";
@@ -14,19 +14,14 @@ stdenv.mkDerivation rec {
 		sha256 = "1dzd6vy43b7p9xplzg2whylz5br59zxaqywa14b4l377f31gnwq1";
 	};
 
-	buildInputs = [ ocaml findlib dune jsonm ppx_fields_conv ppx_sexp_conv ];
+	buildInputs = [ jsonm ppx_fields_conv ppx_sexp_conv ];
 
 	propagatedBuildInputs = [ ppx_deriving base64 fieldslib re stringext uri ];
 
-	buildPhase = "dune build -p cohttp";
-
-	inherit (dune) installPhase;
-
 	meta = {
 		description = "HTTP(S) library for Lwt, Async and Mirage";
 		license = stdenv.lib.licenses.isc;
 		maintainers = [ stdenv.lib.maintainers.vbgl ];
 		inherit (src.meta) homepage;
-		inherit (ocaml.meta) platforms;
 	};
 }
diff --git a/pkgs/development/ocaml-modules/cohttp/lwt-unix.nix b/pkgs/development/ocaml-modules/cohttp/lwt-unix.nix
index 6489a583198c..64a8f2416ad4 100644
--- a/pkgs/development/ocaml-modules/cohttp/lwt-unix.nix
+++ b/pkgs/development/ocaml-modules/cohttp/lwt-unix.nix
@@ -1,4 +1,4 @@
-{ stdenv, ocaml, findlib, dune, cohttp-lwt
+{ stdenv, buildDunePackage, cohttp-lwt
 , conduit-lwt-unix, ppx_sexp_conv
 , cmdliner, fmt, magic-mime
 }:
@@ -7,13 +7,11 @@ if !stdenv.lib.versionAtLeast cohttp-lwt.version "0.99"
 then cohttp-lwt
 else
 
-stdenv.mkDerivation rec {
-	name = "ocaml${ocaml.version}-cohttp-lwt-unix-${version}";
-	inherit (cohttp-lwt) version src installPhase meta;
+buildDunePackage rec {
+	pname = "cohttp-lwt-unix";
+	inherit (cohttp-lwt) version src meta;
 
-	buildInputs = [ ocaml findlib dune cmdliner ppx_sexp_conv ];
+	buildInputs = [ cmdliner ppx_sexp_conv ];
 
 	propagatedBuildInputs = [ cohttp-lwt conduit-lwt-unix fmt magic-mime ];
-
-	buildPhase = "dune build -p cohttp-lwt-unix";
 }
diff --git a/pkgs/development/ocaml-modules/cohttp/lwt.nix b/pkgs/development/ocaml-modules/cohttp/lwt.nix
index 741df5b06145..37348c55262e 100644
--- a/pkgs/development/ocaml-modules/cohttp/lwt.nix
+++ b/pkgs/development/ocaml-modules/cohttp/lwt.nix
@@ -1,16 +1,14 @@
-{ stdenv, ocaml, findlib, dune, cohttp, ocaml_lwt, uri, ppx_sexp_conv }:
+{ stdenv, buildDunePackage, cohttp, ocaml_lwt, uri, ppx_sexp_conv }:
 
 if !stdenv.lib.versionAtLeast cohttp.version "0.99"
 then cohttp
 else
 
-stdenv.mkDerivation rec {
-	name = "ocaml${ocaml.version}-cohttp-lwt-${version}";
-	inherit (cohttp) version src installPhase meta;
+buildDunePackage rec {
+	pname = "cohttp-lwt";
+	inherit (cohttp) version src meta;
 
-	buildInputs = [ ocaml findlib dune uri ppx_sexp_conv ];
+	buildInputs = [ uri ppx_sexp_conv ];
 
 	propagatedBuildInputs = [ cohttp ocaml_lwt ];
-
-	buildPhase = "dune build -p cohttp-lwt";
 }
diff --git a/pkgs/development/ocaml-modules/conduit/default.nix b/pkgs/development/ocaml-modules/conduit/default.nix
index fdfd2bed1f15..39234e86ef1c 100644
--- a/pkgs/development/ocaml-modules/conduit/default.nix
+++ b/pkgs/development/ocaml-modules/conduit/default.nix
@@ -1,11 +1,11 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune
+{ stdenv, fetchFromGitHub, buildDunePackage
 , ppx_sexp_conv
 , astring, ipaddr, uri
 }:
 
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+  pname = "conduit";
 	version = "1.0.0";
-	name = "ocaml${ocaml.version}-conduit-${version}";
 
 	src = fetchFromGitHub {
 		owner = "mirage";
@@ -14,18 +14,13 @@ stdenv.mkDerivation rec {
 		sha256 = "1ryigzh7sfif1mly624fpm87aw5h60n5wzdlrvqsf71qcpxc6iiz";
 	};
 
-	buildInputs = [ ocaml findlib dune ppx_sexp_conv ];
+	buildInputs = [ ppx_sexp_conv ];
 	propagatedBuildInputs = [ astring ipaddr uri ];
 
-	buildPhase = "dune build -p conduit";
-
-	inherit (dune) installPhase;
-
 	meta = {
 		description = "Network connection library for TCP and SSL";
 		license = stdenv.lib.licenses.isc;
 		maintainers = [ stdenv.lib.maintainers.vbgl ];
 		inherit (src.meta) homepage;
-		inherit (ocaml.meta) platforms;
 	};
 }
diff --git a/pkgs/development/ocaml-modules/conduit/lwt-unix.nix b/pkgs/development/ocaml-modules/conduit/lwt-unix.nix
index b4357979de75..b6d2e24ec551 100644
--- a/pkgs/development/ocaml-modules/conduit/lwt-unix.nix
+++ b/pkgs/development/ocaml-modules/conduit/lwt-unix.nix
@@ -1,4 +1,4 @@
-{ stdenv, ocaml, findlib, dune, conduit-lwt
+{ stdenv, buildDunePackage, conduit-lwt
 , logs, ppx_sexp_conv, lwt_ssl
 }:
 
@@ -6,13 +6,11 @@ if !stdenv.lib.versionAtLeast conduit-lwt.version "1.0"
 then conduit-lwt
 else
 
-stdenv.mkDerivation rec {
-	name = "ocaml${ocaml.version}-conduit-lwt-unix-${version}";
-	inherit (conduit-lwt) version src installPhase meta;
+buildDunePackage rec {
+	pname = "conduit-lwt-unix";
+	inherit (conduit-lwt) version src meta;
 
-	buildInputs = [ ocaml findlib dune ppx_sexp_conv ];
+	buildInputs = [ ppx_sexp_conv ];
 
 	propagatedBuildInputs = [ conduit-lwt logs lwt_ssl ];
-
-	buildPhase = "dune build -p conduit-lwt-unix";
 }
diff --git a/pkgs/development/ocaml-modules/conduit/lwt.nix b/pkgs/development/ocaml-modules/conduit/lwt.nix
index 69d7132a83a4..560600e2fee8 100644
--- a/pkgs/development/ocaml-modules/conduit/lwt.nix
+++ b/pkgs/development/ocaml-modules/conduit/lwt.nix
@@ -1,16 +1,14 @@
-{ stdenv, ocaml, findlib, dune, ppx_sexp_conv, conduit, ocaml_lwt }:
+{ stdenv, buildDunePackage, ppx_sexp_conv, conduit, ocaml_lwt }:
 
 if !stdenv.lib.versionAtLeast conduit.version "1.0"
 then conduit
 else
 
-stdenv.mkDerivation rec {
-	name = "ocaml${ocaml.version}-conduit-lwt-${version}";
-	inherit (conduit) version src installPhase meta;
+buildDunePackage rec {
+	pname = "conduit-lwt";
+	inherit (conduit) version src meta;
 
-	buildInputs = [ ocaml findlib dune ppx_sexp_conv ];
+	buildInputs = [ ppx_sexp_conv ];
 
 	propagatedBuildInputs = [ conduit ocaml_lwt ];
-
-	buildPhase = "dune build -p conduit-lwt";
 }
diff --git a/pkgs/development/ocaml-modules/cstruct/default.nix b/pkgs/development/ocaml-modules/cstruct/default.nix
index 1a5a992f2be1..c3941173bff3 100644
--- a/pkgs/development/ocaml-modules/cstruct/default.nix
+++ b/pkgs/development/ocaml-modules/cstruct/default.nix
@@ -1,8 +1,9 @@
-{ stdenv, fetchurl, ocaml, dune, findlib, sexplib, ocplib-endian }:
+{ stdenv, fetchurl, buildDunePackage, sexplib, ocplib-endian }:
 
-stdenv.mkDerivation rec {
-  name = "ocaml${ocaml.version}-cstruct-${version}";
+buildDunePackage rec {
+  pname = "cstruct";
   version = "3.1.1";
+
   src = fetchurl {
     url = "https://github.com/mirage/ocaml-cstruct/releases/download/v${version}/cstruct-${version}.tbz";
     sha256 = "1x4jxsvd1lrfibnjdjrkfl7hqsc48rljnwbap6faanj9qhwwa6v2";
@@ -10,19 +11,12 @@ stdenv.mkDerivation rec {
 
   unpackCmd = "tar -xjf $curSrc";
 
-  buildInputs = [ ocaml dune findlib ];
-
   propagatedBuildInputs = [ sexplib ocplib-endian ];
 
-  buildPhase = "dune build -p cstruct";
-
-  inherit (dune) installPhase;
-
   meta = {
     description = "Access C-like structures directly from OCaml";
     license = stdenv.lib.licenses.isc;
     homepage = "https://github.com/mirage/ocaml-cstruct";
     maintainers = [ stdenv.lib.maintainers.vbgl ];
-    inherit (ocaml.meta) platforms;
   };
 }
diff --git a/pkgs/development/ocaml-modules/cstruct/lwt.nix b/pkgs/development/ocaml-modules/cstruct/lwt.nix
index 065716e68529..367a7fa2a445 100644
--- a/pkgs/development/ocaml-modules/cstruct/lwt.nix
+++ b/pkgs/development/ocaml-modules/cstruct/lwt.nix
@@ -1,12 +1,10 @@
-{ stdenv, ocaml, cstruct, lwt }:
+{ buildDunePackage, cstruct, lwt }:
 
-assert stdenv.lib.versionAtLeast ocaml.version "4.02";
+buildDunePackage {
+	pname = "cstruct-lwt";
+	inherit (cstruct) version src unpackCmd meta;
 
-stdenv.mkDerivation rec {
-	name = "ocaml${ocaml.version}-cstruct-lwt-${version}";
-	inherit (cstruct) version src unpackCmd buildInputs installPhase meta;
+  minimumOCamlVersion = "4.02";
 
 	propagatedBuildInputs = [ cstruct lwt ];
-
-	buildPhase = "${cstruct.buildPhase}-lwt";
 }
diff --git a/pkgs/development/ocaml-modules/cstruct/ppx.nix b/pkgs/development/ocaml-modules/cstruct/ppx.nix
index 1696e200750c..837bca370cf3 100644
--- a/pkgs/development/ocaml-modules/cstruct/ppx.nix
+++ b/pkgs/development/ocaml-modules/cstruct/ppx.nix
@@ -1,13 +1,11 @@
-{ stdenv, ocaml, cstruct, ppx_tools_versioned }:
+{ buildDunePackage, cstruct, ppx_tools_versioned }:
 
-assert stdenv.lib.versionAtLeast ocaml.version "4.02";
+buildDunePackage {
+	pname = "ppx_cstruct";
+	inherit (cstruct) version src unpackCmd meta;
 
-stdenv.mkDerivation rec {
-	name = "ocaml${ocaml.version}-ppx_cstruct-${version}";
-	inherit (cstruct) version src unpackCmd installPhase meta;
+  minimumOCamlVersion = "4.02";
 
-	buildInputs = cstruct.buildInputs ++ [ ppx_tools_versioned ];
+	buildInputs = [ ppx_tools_versioned ];
 	propagatedBuildInputs = [ cstruct ];
-
-	buildPhase = "dune build -p ppx_cstruct";
 }
diff --git a/pkgs/development/ocaml-modules/cstruct/unix.nix b/pkgs/development/ocaml-modules/cstruct/unix.nix
index 2a614579fccc..6fb34ba7821b 100644
--- a/pkgs/development/ocaml-modules/cstruct/unix.nix
+++ b/pkgs/development/ocaml-modules/cstruct/unix.nix
@@ -1,12 +1,10 @@
-{ stdenv, ocaml, cstruct }:
+{ buildDunePackage, cstruct }:
 
-assert stdenv.lib.versionAtLeast ocaml.version "4.02";
+buildDunePackage {
+	pname = "cstruct-unix";
+	inherit (cstruct) version src unpackCmd meta;
 
-stdenv.mkDerivation rec {
-	name = "ocaml${ocaml.version}-cstruct-unix-${version}";
-	inherit (cstruct) version src unpackCmd buildInputs installPhase meta;
+  minimumOCamlVersion = "4.02";
 
 	propagatedBuildInputs = [ cstruct ];
-
-	buildPhase = "${cstruct.buildPhase}-unix";
 }
diff --git a/pkgs/development/ocaml-modules/csv/default.nix b/pkgs/development/ocaml-modules/csv/default.nix
index 6c6f8a68f814..8b67200f32f7 100644
--- a/pkgs/development/ocaml-modules/csv/default.nix
+++ b/pkgs/development/ocaml-modules/csv/default.nix
@@ -1,26 +1,20 @@
-{ stdenv, fetchurl, ocaml, findlib, dune }:
+{ stdenv, fetchurl, buildDunePackage }:
 
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+  pname = "csv";
 	version = "2.1";
-	name = "ocaml${ocaml.version}-csv-${version}";
+
 	src = fetchurl {
-		url = "https://github.com/Chris00/ocaml-csv/releases/download/2.1/csv-2.1.tbz";
+		url = "https://github.com/Chris00/ocaml-${pname}/releases/download/${version}/csv-${version}.tbz";
 		sha256 = "0cgfb6cwhwy7ypc1i3jyfz6sdnykp75aqi6kk0g1a2d81yjwzbcg";
 	};
 
 	unpackCmd = "tar -xjf $src";
 
-	buildInputs = [ ocaml findlib dune ];
-
-	buildPhase = "dune build -p csv";
-
-	inherit (dune) installPhase;
-
 	meta = {
 		description = "A pure OCaml library to read and write CSV files";
 		license = stdenv.lib.licenses.lgpl21;
 		maintainers = [ stdenv.lib.maintainers.vbgl ];
 		homepage = https://github.com/Chris00/ocaml-csv;
-		inherit (ocaml.meta) platforms;
 	};
 }
diff --git a/pkgs/development/ocaml-modules/doc-ock-html/default.nix b/pkgs/development/ocaml-modules/doc-ock-html/default.nix
index cb2756b0977c..cd2e2761b503 100644
--- a/pkgs/development/ocaml-modules/doc-ock-html/default.nix
+++ b/pkgs/development/ocaml-modules/doc-ock-html/default.nix
@@ -1,27 +1,22 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune, doc-ock, tyxml, xmlm }:
+{ stdenv, fetchFromGitHub, buildDunePackage, doc-ock, tyxml, xmlm }:
 
-stdenv.mkDerivation rec {
-  name = "ocaml${ocaml.version}-doc-ock-html-${version}";
+buildDunePackage rec {
+  pname = "doc-ock-html";
   version = "1.2.1";
 
   src = fetchFromGitHub {
     owner = "ocaml-doc";
-    repo = "doc-ock-html";
+    repo = pname;
     rev = "v${version}";
     sha256 = "1y620h48qrplmcm78g7c78zibpkai4j3icwmnx95zb3r8xq8554y";
   };
 
-  buildInputs = [ ocaml findlib dune ];
-
   propagatedBuildInputs = [ doc-ock tyxml xmlm ];
 
-  inherit (dune) installPhase;
-
   meta = {
     description = "From doc-ock to HTML";
     license = stdenv.lib.licenses.isc;
     maintainers = [ stdenv.lib.maintainers.vbgl ];
-    inherit (ocaml.meta) platforms;
     inherit (src.meta) homepage;
   };
 }
diff --git a/pkgs/development/ocaml-modules/doc-ock-xml/default.nix b/pkgs/development/ocaml-modules/doc-ock-xml/default.nix
index 72e562cb5f36..cebf7707788d 100644
--- a/pkgs/development/ocaml-modules/doc-ock-xml/default.nix
+++ b/pkgs/development/ocaml-modules/doc-ock-xml/default.nix
@@ -1,27 +1,22 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune, doc-ock, menhir, xmlm }:
+{ stdenv, fetchFromGitHub, buildDunePackage, doc-ock, menhir, xmlm }:
 
-stdenv.mkDerivation rec {
-  name = "ocaml${ocaml.version}-doc-ock-xml-${version}";
+buildDunePackage rec {
+  pname = "doc-ock-xml";
   version = "1.2.1";
 
   src = fetchFromGitHub {
     owner = "ocaml-doc";
-    repo = "doc-ock-xml";
+    repo = pname;
     rev = "v${version}";
     sha256 = "1s27ri7vj9ixi5p5ixg6g6invk96807bvxbqjrr1dm8sxgl1nd20";
   };
 
-  buildInputs = [ ocaml findlib dune ];
-
   propagatedBuildInputs = [ doc-ock menhir xmlm ];
 
-  inherit (dune) installPhase;
-
   meta = {
     description = "XML printer and parser for Doc-Ock";
     license = stdenv.lib.licenses.isc;
     maintainers = [ stdenv.lib.maintainers.vbgl ];
-    inherit (ocaml.meta) platforms;
     inherit (src.meta) homepage;
   };
 }
diff --git a/pkgs/development/ocaml-modules/doc-ock/default.nix b/pkgs/development/ocaml-modules/doc-ock/default.nix
index c158f08b0687..ff42c93e5c1c 100644
--- a/pkgs/development/ocaml-modules/doc-ock/default.nix
+++ b/pkgs/development/ocaml-modules/doc-ock/default.nix
@@ -1,27 +1,24 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune, octavius, cppo }:
+{ stdenv, fetchFromGitHub, buildDunePackage, octavius, cppo }:
 
-stdenv.mkDerivation rec {
-  name = "ocaml${ocaml.version}-doc-ock-${version}";
+buildDunePackage rec {
+  pname = "doc-ock";
   version = "1.2.1";
 
   src = fetchFromGitHub {
     owner = "ocaml-doc";
-    repo = "doc-ock";
+    repo = pname;
     rev = "v${version}";
     sha256 = "090vprm12jrl55yllk1hdzbsqyr107yjs2qnc49yahdhvnr4h5b7";
   };
 
-  buildInputs = [ ocaml findlib dune cppo ];
+  buildInputs = [ cppo ];
 
   propagatedBuildInputs = [ octavius ];
 
-  inherit (dune) installPhase;
-
   meta = {
     description = "Extract documentation from OCaml files";
     license = stdenv.lib.licenses.isc;
     maintainers = [ stdenv.lib.maintainers.vbgl ];
-    inherit (ocaml.meta) platforms;
     inherit (src.meta) homepage;
   };
 }
diff --git a/pkgs/development/ocaml-modules/dtoa/default.nix b/pkgs/development/ocaml-modules/dtoa/default.nix
index a76e0c61450b..0e776f8e0c79 100644
--- a/pkgs/development/ocaml-modules/dtoa/default.nix
+++ b/pkgs/development/ocaml-modules/dtoa/default.nix
@@ -1,12 +1,11 @@
-{ stdenv, fetchurl, ocaml, findlib, dune }:
+{ stdenv, fetchurl, buildDunePackage }:
 
-assert stdenv.lib.versionAtLeast (stdenv.lib.getVersion ocaml) "4.01";
-
-stdenv.mkDerivation rec {
+buildDunePackage rec {
   pname = "dtoa";
-  name = "ocaml-${pname}-${version}";
   version = "0.3.1";
 
+  minimumOCamlVersion = "4.01";
+
   src = fetchurl {
     url = "https://github.com/flowtype/ocaml-${pname}/releases/download/v${version}/${pname}-${version}.tbz";
     sha256 = "0rzysj07z2q6gk0yhjxnjnba01vmdb9x32wwna10qk3rrb8r2pnn";
@@ -14,19 +13,12 @@ stdenv.mkDerivation rec {
 
   unpackCmd = "tar xjf $src";
 
-  buildInputs = [ ocaml findlib dune ];
-
-  buildPhase = "dune build -p dtoa";
-
-  inherit (dune) installPhase;
-
   hardeningDisable = stdenv.lib.optional stdenv.isDarwin "strictoverflow";
 
   meta = with stdenv.lib; {
     homepage = https://github.com/flowtype/ocaml-dtoa;
     description = "Converts OCaml floats into strings (doubles to ascii, \"d to a\"), using the efficient Grisu3 algorithm.";
     license = licenses.mit;
-    platforms = ocaml.meta.platforms or [];
     maintainers = [ maintainers.eqyiel ];
   };
 }
diff --git a/pkgs/development/ocaml-modules/ezjsonm/default.nix b/pkgs/development/ocaml-modules/ezjsonm/default.nix
index d38cf51c1531..fc1936c2b473 100644
--- a/pkgs/development/ocaml-modules/ezjsonm/default.nix
+++ b/pkgs/development/ocaml-modules/ezjsonm/default.nix
@@ -1,27 +1,20 @@
-{ stdenv, fetchzip, ocaml, findlib, dune, jsonm, hex, sexplib }:
+{ stdenv, fetchzip, buildDunePackage, jsonm, hex, sexplib }:
 
-let version = "0.6.0"; in
-
-stdenv.mkDerivation {
-  name = "ocaml${ocaml.version}-ezjsonm-${version}";
+buildDunePackage rec {
+  pname = "ezjsonm";
+  version = "0.6.0";
 
   src = fetchzip {
-    url = "https://github.com/mirage/ezjsonm/archive/${version}.tar.gz";
+    url = "https://github.com/mirage/${pname}/archive/${version}.tar.gz";
     sha256 = "18g64lhai0bz65b9fil12vlgfpwa9b5apj7x6d7n4zzm18qfazvj";
   };
 
-  buildInputs = [ ocaml findlib dune ];
   propagatedBuildInputs = [ jsonm hex sexplib ];
 
-  buildPhase = "dune build -p ezjsonm";
-
-  inherit (dune) installPhase;
-
   meta = {
     description = "An easy interface on top of the Jsonm library";
     homepage = https://github.com/mirage/ezjsonm;
     license = stdenv.lib.licenses.isc;
     maintainers = with stdenv.lib.maintainers; [ vbgl ];
-    platforms = ocaml.meta.platforms or [];
   };
 }
diff --git a/pkgs/development/ocaml-modules/ezxmlm/default.nix b/pkgs/development/ocaml-modules/ezxmlm/default.nix
index d40c47dd7a40..1740bd77fdb2 100644
--- a/pkgs/development/ocaml-modules/ezxmlm/default.nix
+++ b/pkgs/development/ocaml-modules/ezxmlm/default.nix
@@ -1,24 +1,18 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune, xmlm }:
+{ stdenv, fetchFromGitHub, buildDunePackage, xmlm }:
 
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+  pname = "ezxmlm";
   version = "1.0.2";
-  name = "ocaml${ocaml.version}-ezxmlm-${version}";
 
   src = fetchFromGitHub {
     owner = "avsm";
-    repo = "ezxmlm";
+    repo = pname;
     rev = "v${version}";
     sha256 = "1dgr61f0hymywikn67inq908x5adrzl3fjx3v14l9k46x7kkacl9";
   };
 
   propagatedBuildInputs = [ xmlm ];
 
-  buildInputs = [ ocaml findlib dune ];
-
-  buildFlags = "build";
-
-  inherit (dune) installPhase;
-
   meta = with stdenv.lib; {
     description = "Combinators to use with xmlm for parsing and selection";
     longDescription = ''
@@ -34,7 +28,6 @@ stdenv.mkDerivation rec {
     '';
     maintainers = [ maintainers.carlosdagos ];
     inherit (src.meta) homepage;
-    inherit (ocaml.meta) platforms;
     license = licenses.isc;
   };
 }
diff --git a/pkgs/development/ocaml-modules/faraday/default.nix b/pkgs/development/ocaml-modules/faraday/default.nix
index 6af808654f53..34c8fcbfcbcd 100644
--- a/pkgs/development/ocaml-modules/faraday/default.nix
+++ b/pkgs/development/ocaml-modules/faraday/default.nix
@@ -1,34 +1,25 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune, alcotest }:
+{ stdenv, fetchFromGitHub, buildDunePackage, alcotest }:
 
-if !stdenv.lib.versionAtLeast ocaml.version "4.02"
-then throw "faraday is not available for OCaml ${ocaml.version}"
-else
-
-stdenv.mkDerivation rec {
-  name = "ocaml${ocaml.version}-faraday-${version}";
+buildDunePackage rec {
+  pname = "faraday";
   version = "0.5.0";
 
+  minimumOCamlVersion = "4.02";
+
   src = fetchFromGitHub {
     owner = "inhabitedtype";
-    repo = "faraday";
+    repo = pname;
     rev = version;
     sha256 = "1kql0il1frsbx6rvwqd7ahi4m14ik6la5an6c2w4x7k00ndm4d7n";
   };
 
-  buildInputs = [ ocaml findlib dune alcotest ];
-
-  buildPhase = "dune build -p faraday";
-
+  buildInputs = [ alcotest ];
   doCheck = true;
-  checkPhase = "jbuilder runtest";
-
-  inherit (dune) installPhase;
 
   meta = {
     description = "Serialization library built for speed and memory efficiency";
     license = stdenv.lib.licenses.bsd3;
     maintainers = [ stdenv.lib.maintainers.vbgl ];
     inherit (src.meta) homepage;
-    inherit (ocaml.meta) platforms;
   };
 }
diff --git a/pkgs/development/ocaml-modules/gapi-ocaml/default.nix b/pkgs/development/ocaml-modules/gapi-ocaml/default.nix
index bf7418ab27eb..25f5e35492b2 100644
--- a/pkgs/development/ocaml-modules/gapi-ocaml/default.nix
+++ b/pkgs/development/ocaml-modules/gapi-ocaml/default.nix
@@ -1,28 +1,24 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune, ocurl, cryptokit, ocaml_extlib, yojson, ocamlnet, xmlm }:
+{ stdenv, fetchFromGitHub, buildDunePackage, ocurl, cryptokit, ocaml_extlib, yojson, ocamlnet, xmlm }:
 
-if !stdenv.lib.versionAtLeast ocaml.version "4.02"
-then throw "gapi-ocaml is not available for OCaml ${ocaml.version}"
-else
-
-stdenv.mkDerivation rec {
-  name = "gapi-ocaml-${version}";
+buildDunePackage rec {
+  pname = "gapi-ocaml";
   version = "0.3.6";
+
+  minimumOCamlVersion = "4.02";
+
   src = fetchFromGitHub {
     owner = "astrada";
-    repo = "gapi-ocaml";
+    repo = pname;
     rev = "v${version}";
     sha256 = "0qgsy51bhkpfgl5rdnjw4bqs5fbh2w4vwrfbl8y3lh1wrqmnwci4";
   };
-  buildInputs = [ ocaml dune findlib ];
-  propagatedBuildInputs = [ ocurl cryptokit ocaml_extlib yojson ocamlnet xmlm ];
 
-  inherit (dune) installPhase;
+  propagatedBuildInputs = [ ocurl cryptokit ocaml_extlib yojson ocamlnet xmlm ];
 
   meta = {
     description = "OCaml client for google services";
     homepage = http://gapi-ocaml.forge.ocamlcore.org;
     license = stdenv.lib.licenses.mit;
     maintainers = with stdenv.lib.maintainers; [ bennofs ];
-    platforms = ocaml.meta.platforms or [];
   };
 }
diff --git a/pkgs/development/ocaml-modules/git-http/default.nix b/pkgs/development/ocaml-modules/git-http/default.nix
index c6abb0171b03..0869ae659cc3 100644
--- a/pkgs/development/ocaml-modules/git-http/default.nix
+++ b/pkgs/development/ocaml-modules/git-http/default.nix
@@ -1,24 +1,15 @@
-{ stdenv, ocaml, findlib, dune, git, cohttp-lwt
-, alcotest, mtime, nocrypto
-}:
+{ buildDunePackage, git, cohttp-lwt, alcotest, mtime, nocrypto }:
 
-stdenv.mkDerivation rec {
-	name = "ocaml${ocaml.version}-git-http-${version}";
+buildDunePackage rec {
+	pname = "git-http";
 	inherit (git) version src;
 
-	buildInputs = [ ocaml findlib dune alcotest mtime nocrypto ];
-
+	buildInputs = [ alcotest mtime nocrypto ];
 	propagatedBuildInputs = [ git cohttp-lwt ];
-
-	buildPhase = "dune build -p git-http";
-
-	inherit (dune) installPhase;
-
 	doCheck = true;
-	checkPhase = "dune runtest -p git-http";
 
 	meta = {
 		description = "Client implementation of the “Smart” HTTP Git protocol in pure OCaml";
-		inherit (git.meta) homepage license maintainers platforms;
+		inherit (git.meta) homepage license maintainers;
 	};
 }
diff --git a/pkgs/development/ocaml-modules/git-unix/default.nix b/pkgs/development/ocaml-modules/git-unix/default.nix
index 7a796ca089d5..9c8a7c48255f 100644
--- a/pkgs/development/ocaml-modules/git-unix/default.nix
+++ b/pkgs/development/ocaml-modules/git-unix/default.nix
@@ -1,22 +1,14 @@
-{ stdenv, ocaml, findlib, dune, git-http
-, cohttp-lwt-unix
-, tls, cmdliner, mtime
-}:
+{ buildDunePackage, git-http, cohttp-lwt-unix, tls, cmdliner, mtime }:
 
-stdenv.mkDerivation rec {
-	name = "ocaml${ocaml.version}-git-unix-${version}";
+buildDunePackage rec {
+	pname = "git-unix";
 	inherit (git-http) version src;
 
-	buildInputs = [ ocaml findlib dune cmdliner mtime ];
-
+	buildInputs = [ cmdliner mtime ];
 	propagatedBuildInputs = [ cohttp-lwt-unix git-http tls ];
 
-	buildPhase = "dune build -p git-unix";
-
-	inherit (dune) installPhase;
-
 	meta = {
 		description = "Unix backend for the Git protocol(s)";
-		inherit (git-http.meta) homepage license maintainers platforms;
+		inherit (git-http.meta) homepage license maintainers;
 	};
 }
diff --git a/pkgs/development/ocaml-modules/git/default.nix b/pkgs/development/ocaml-modules/git/default.nix
index 777184ed2e94..944195fd0a3e 100644
--- a/pkgs/development/ocaml-modules/git/default.nix
+++ b/pkgs/development/ocaml-modules/git/default.nix
@@ -1,11 +1,11 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune
+{ stdenv, fetchFromGitHub, buildDunePackage
 , astring, decompress, fmt, hex, logs, mstruct, ocaml_lwt, ocamlgraph, uri
 , alcotest, mtime, nocrypto
 }:
 
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+  pname = "git";
 	version = "1.11.5";
-	name = "ocaml${ocaml.version}-git-${version}";
 
 	src = fetchFromGitHub {
 		owner = "mirage";
@@ -14,22 +14,14 @@ stdenv.mkDerivation rec {
 		sha256 = "0r1bxpxjjnl9hh8xbabsxl7svzvd19hfy73a2y1m4kljmw64dpfh";
 	};
 
-	buildInputs = [ ocaml findlib dune alcotest mtime nocrypto ];
-
+	buildInputs = [ alcotest mtime nocrypto ];
 	propagatedBuildInputs = [ astring decompress fmt hex logs mstruct ocaml_lwt ocamlgraph uri ];
-
-	buildPhase = "dune build -p git";
-
-	inherit (dune) installPhase;
-
 	doCheck = true;
-	checkPhase = "dune runtest -p git";
 
 	meta = {
 		description = "Git format and protocol in pure OCaml";
 		license = stdenv.lib.licenses.isc;
 		maintainers = [ stdenv.lib.maintainers.vbgl ];
 		inherit (src.meta) homepage;
-		inherit (ocaml.meta) platforms;
 	};
 }
diff --git a/pkgs/development/ocaml-modules/hex/default.nix b/pkgs/development/ocaml-modules/hex/default.nix
index 71a9ebf9ad5d..0131b0359707 100644
--- a/pkgs/development/ocaml-modules/hex/default.nix
+++ b/pkgs/development/ocaml-modules/hex/default.nix
@@ -1,34 +1,25 @@
-{ stdenv, fetchurl, ocaml, findlib, dune, cstruct }:
+{ stdenv, fetchurl, buildDunePackage, cstruct }:
 
-if !stdenv.lib.versionAtLeast ocaml.version "4.02"
-then throw "hex is not available for OCaml ${ocaml.version}"
-else
+buildDunePackage rec {
+  pname = "hex";
+  version = "1.2.0";
 
-let version = "1.2.0"; in
-
-stdenv.mkDerivation {
-  name = "ocaml${ocaml.version}-hex-${version}";
+  minimumOCamlVersion = "4.02";
 
   src = fetchurl {
-    url = "https://github.com/mirage/ocaml-hex/releases/download/v1.2.0/hex-1.2.0.tbz";
+    url = "https://github.com/mirage/ocaml-${pname}/releases/download/v${version}/hex-${version}.tbz";
     sha256 = "17hqf7z5afp2z2c55fk5myxkm7cm74259rqm94hcxkqlpdaqhm8h";
   };
 
   unpackCmd = "tar -xjf $curSrc";
 
-  buildInputs = [ ocaml findlib dune ];
   propagatedBuildInputs = [ cstruct ];
-
-  buildPhase = "dune build -p hex";
   doCheck = true;
-  checkPhase = "jbuilder runtest";
-  inherit (dune) installPhase;
 
   meta = {
     description = "Mininal OCaml library providing hexadecimal converters";
     homepage = https://github.com/mirage/ocaml-hex;
     license = stdenv.lib.licenses.isc;
     maintainers = with stdenv.lib.maintainers; [ vbgl ];
-    platforms = ocaml.meta.platforms or [];
   };
 }
diff --git a/pkgs/development/ocaml-modules/httpaf/default.nix b/pkgs/development/ocaml-modules/httpaf/default.nix
index e8638e4cf184..bec4f947ce30 100644
--- a/pkgs/development/ocaml-modules/httpaf/default.nix
+++ b/pkgs/development/ocaml-modules/httpaf/default.nix
@@ -1,33 +1,24 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune
-, angstrom, faraday, alcotest
-}:
+{ stdenv, fetchFromGitHub, buildDunePackage, angstrom, faraday, alcotest }:
 
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+  pname = "httpaf";
   version = "0.4.1";
-  name = "ocaml${ocaml.version}-httpaf-${version}";
 
   src = fetchFromGitHub {
     owner = "inhabitedtype";
-    repo = "httpaf";
+    repo = pname;
     rev = version;
     sha256 = "0i2r004ihj00hd97475y8nhjqjln58xx087zcjl0dfp0n7q80517";
   };
 
-  buildInputs = [ ocaml findlib dune alcotest ];
+  buildInputs = [ alcotest ];
   propagatedBuildInputs = [ angstrom faraday ];
-
-  buildPhase = "dune build -p httpaf";
-
   doCheck = true;
-  checkPhase = "dune runtest -p httpaf";
-
-  inherit (dune) installPhase;
 
   meta = {
     description = "A high-performance, memory-efficient, and scalable web server for OCaml";
     license = stdenv.lib.licenses.bsd3;
     maintainers = [ stdenv.lib.maintainers.vbgl ];
     inherit (src.meta) homepage;
-    inherit (ocaml.meta) platforms;
   };
 }
diff --git a/pkgs/development/ocaml-modules/io-page/default.nix b/pkgs/development/ocaml-modules/io-page/default.nix
index 7c3d3a20c4d7..e0f024569626 100644
--- a/pkgs/development/ocaml-modules/io-page/default.nix
+++ b/pkgs/development/ocaml-modules/io-page/default.nix
@@ -1,23 +1,19 @@
-{ stdenv, fetchzip, ocaml, findlib, dune, configurator, cstruct }:
+{ stdenv, fetchzip, buildDunePackage, configurator, cstruct }:
 
-let version = "2.0.1"; in
-
-stdenv.mkDerivation {
-  name = "ocaml${ocaml.version}-io-page-${version}";
+buildDunePackage rec {
+  pname = "io-page";
+  version = "2.0.1";
 
   src = fetchzip {
-    url = "https://github.com/mirage/io-page/archive/${version}.tar.gz";
+    url = "https://github.com/mirage/${pname}/archive/${version}.tar.gz";
     sha256 = "1rw04dwrlx5hah5dkjf7d63iff82j9cifr8ifjis5pdwhgwcff8i";
   };
 
-  buildInputs = [ ocaml findlib dune configurator ];
+  buildInputs = [ configurator ];
   propagatedBuildInputs = [ cstruct ];
 
-  inherit (dune) installPhase;
-
   meta = {
     homepage = https://github.com/mirage/io-page;
-    inherit (ocaml.meta) platforms;
     license = stdenv.lib.licenses.isc;
     description = "IO memory page library for Mirage backends";
     maintainers = with stdenv.lib.maintainers; [ vbgl ];
diff --git a/pkgs/development/ocaml-modules/ipaddr/default.nix b/pkgs/development/ocaml-modules/ipaddr/default.nix
index 9a12fb44fffb..3d5959fe64e2 100644
--- a/pkgs/development/ocaml-modules/ipaddr/default.nix
+++ b/pkgs/development/ocaml-modules/ipaddr/default.nix
@@ -1,21 +1,16 @@
-{ stdenv, fetchurl, ocaml, ocamlbuild, findlib
-, dune, sexplib, ppx_sexp_conv
-}:
+{ stdenv, fetchurl, buildDunePackage, sexplib, ppx_sexp_conv }:
 
-stdenv.mkDerivation rec {
-  name = "ocaml${ocaml.version}-ipaddr-${version}";
+buildDunePackage rec {
+  pname = "ipaddr";
   version = "2.8.0";
 
   src = fetchurl {
-    url = "https://github.com/mirage/ocaml-ipaddr/archive/${version}.tar.gz";
+    url = "https://github.com/mirage/ocaml-${pname}/archive/${version}.tar.gz";
     sha256 = "1amb1pbm9ybpxy6190qygpj6nmbzzs2r6vx4xh5r6v89szx9rfxw";
   };
 
-  buildInputs = [ ocaml findlib ocamlbuild dune ];
   propagatedBuildInputs = [ ppx_sexp_conv sexplib ];
 
-  inherit (dune) installPhase;
-
   meta = with stdenv.lib; {
     homepage = https://github.com/mirage/ocaml-ipaddr;
     description = "A library for manipulation of IP (and MAC) address representations ";
diff --git a/pkgs/development/ocaml-modules/janestreet/default.nix b/pkgs/development/ocaml-modules/janestreet/default.nix
index 040a4ca618b0..504e83734d88 100644
--- a/pkgs/development/ocaml-modules/janestreet/default.nix
+++ b/pkgs/development/ocaml-modules/janestreet/default.nix
@@ -7,26 +7,26 @@
 rec {
 
   ocaml-compiler-libs = janePackage {
-    name = "ocaml-compiler-libs";
+    pname = "ocaml-compiler-libs";
     hash = "03jds7bszh8wwpfwxb3dg0gyr1j1872wxwx1xqhry5ir0i84bg0s";
     meta.description = "OCaml compiler libraries repackaged";
   };
 
   sexplib0 = janePackage {
-    name = "sexplib0";
+    pname = "sexplib0";
     meta.description = "Library containing the definition of S-expressions and some base converters";
     hash = "07v3ggyss7xhfv14bjk1n87sr42iqwj4cgjiv2lcdfkqk49i2bmi";
   };
 
   parsexp = janePackage {
-    name = "parsexp";
+    pname = "parsexp";
     hash = "1nyq23s5igd8cf3n4qxprjvhbmb6ighb3fy5mw7hxl0mdgsw5fvz";
     propagatedBuildInputs = [ sexplib0 ];
     meta.description = "S-expression parsing library";
   };
 
   sexplib = janePackage {
-    name = "sexplib";
+    pname = "sexplib";
     meta.description = "Library for serializing OCaml values to and from S-expressions";
     hash = "1qfl0m04rpcjvc4yw1hzh6r16jpwmap0sa9ax6zjji67dz4szpyb";
     propagatedBuildInputs = [ num parsexp ];
@@ -34,28 +34,28 @@ rec {
 
   base = janePackage {
     version = "0.11.1";
-    name = "base";
+    pname = "base";
     hash = "0j6xb4265jr41vw4fjzak6yr8s30qrnzapnc6rl1dxy8bjai0nir";
     propagatedBuildInputs = [ sexplib0 ];
     meta.description = "Full standard library replacement for OCaml";
   };
 
   stdio = janePackage {
-    name = "stdio";
+    pname = "stdio";
     hash = "1facajqhvq34g2wrg368y0ajxd6lrj5b3lyzyj0jhdmraxajjcwn";
     propagatedBuildInputs = [ base ];
     meta.description = "Standard IO library for OCaml";
   };
 
   configurator = janePackage {
-    name = "configurator";
+    pname = "configurator";
     hash = "0h686630cscav7pil8c3w0gbh6rj4b41dvbnwmicmlkc746q5bfk";
     propagatedBuildInputs = [ stdio ];
     meta.description = "Helper library for gathering system configuration";
   };
 
   ppx_compare = janePackage {
-    name = "ppx_compare";
+    pname = "ppx_compare";
     version = "0.11.1";
     hash = "06bq4m1bsm4jlx4g7wh5m99qky7xm4c2g52kaz6pv25hdn5agi2m";
     buildInputs = [ ppxlib ];
@@ -64,7 +64,7 @@ rec {
   };
 
   ppx_sexp_conv = janePackage {
-    name = "ppx_sexp_conv";
+    pname = "ppx_sexp_conv";
     version = "0.11.2";
     hash = "0pqwnqy1xp309wvdcaax4lg02yk64lq2w03mbgfvf6ps5ry4gis9";
     propagatedBuildInputs = [ sexplib0 ppxlib ppx_deriving ];
@@ -72,7 +72,7 @@ rec {
   };
 
   variantslib = janePackage {
-    name = "variantslib";
+    pname = "variantslib";
     hash = "0hbsk34ghc28h8pzbma923ma2bgnz8lzrgcqqx9bzg161jl4s4r3";
     buildInputs = [ ppxlib ];
     propagatedBuildInputs = [ base ];
@@ -80,7 +80,7 @@ rec {
   };
 
   ppx_variants_conv = janePackage {
-    name = "ppx_variants_conv";
+    pname = "ppx_variants_conv";
     version = "0.11.1";
     hash = "1yc0gsds5m2nv39zga8nnrca2n75rkqy5dz4xj1635ybz20hhbjd";
     buildInputs = [ ppxlib ];
@@ -89,48 +89,48 @@ rec {
   };
 
   fieldslib = janePackage {
-    name = "fieldslib";
+    pname = "fieldslib";
     hash = "1yvjvfax56lmn2lxbykcmhgmxypws1vp9lhnyb8bhbavsv8yc6da";
     propagatedBuildInputs = [ ppxlib ];
     meta.description = "OCaml record fields as first class values";
   };
 
   ppx_fields_conv = janePackage {
-    name = "ppx_fields_conv";
+    pname = "ppx_fields_conv";
     hash = "1bb9cmn4js7p3qh8skzyik1pcz6sj1k4xkhf12fg1bjmb5fd0jx1";
     propagatedBuildInputs = [ fieldslib ];
     meta.description = "Generation of accessor and iteration functions for OCaml records";
   };
 
   ppx_custom_printf = janePackage {
-    name = "ppx_custom_printf";
+    pname = "ppx_custom_printf";
     hash = "1dvjzvaxhx53jqwrrlxdckwl1azrhs9kvwb48mhgd0jnz65ny726";
     propagatedBuildInputs = [ ppx_sexp_conv ];
     meta.description = "Printf-style format-strings for user-defined string conversion";
   };
 
   bin_prot = janePackage {
-    name = "bin_prot";
+    pname = "bin_prot";
     hash = "1mgbyzsr8h0y4s4j9dv7hsdrxyzhhjww5khwg2spi2my7ia95m0l";
     propagatedBuildInputs = [ ppx_compare ppx_custom_printf ppx_fields_conv ppx_variants_conv ];
     meta.description = "Binary protocol generator";
   };
 
   jane-street-headers = janePackage {
-    name = "jane-street-headers";
+    pname = "jane-street-headers";
     hash = "0kij4c7qxrja787f3sm3z6mzr322486h2djrlyhnl66vp8hrv8si";
     meta.description = "Jane Street header files";
   };
 
   ppx_here = janePackage {
-    name = "ppx_here";
+    pname = "ppx_here";
     hash = "04njv8s4n54x9rg0012ymd6y6lrnqprnh0f0f6s0jcp79q7mv43i";
     buildInputs = [ ppxlib ];
     meta.description = "Expands [%here] into its location";
   };
 
   ppx_assert = janePackage {
-    name = "ppx_assert";
+    pname = "ppx_assert";
     hash = "0qbdrl0rj0midnb6sdyaz00s0d4nb8zrrdf565lcdsi1rbnyrzan";
     buildInputs = [ ppx_here ];
     propagatedBuildInputs = [ ppx_compare ppx_sexp_conv ];
@@ -139,14 +139,14 @@ rec {
 
   ppx_hash = janePackage {
     version = "0.11.1";
-    name = "ppx_hash";
+    pname = "ppx_hash";
     hash = "1p0ic6aijxlrdggpmycj12q3cy9xksbq2vq727215maz4snvlf5p";
     propagatedBuildInputs = [ ppx_compare ppx_sexp_conv ];
     meta.description = "A ppx rewriter that generates hash functions from type expressions and definitions";
   };
 
   ppx_inline_test = janePackage {
-    name = "ppx_inline_test";
+    pname = "ppx_inline_test";
     hash = "11n94fz1asjf5vqdgriv0pvsa5lbfpqcyk525c7816w23vskcvq6";
     buildInputs = [ ppxlib ];
     propagatedBuildInputs = [ base ];
@@ -154,7 +154,7 @@ rec {
   };
 
   ppx_sexp_message = janePackage {
-    name = "ppx_sexp_message";
+    pname = "ppx_sexp_message";
     hash = "0d94pf0mrmyp905ncgj4w6cc6zpm4nlib6nclslhgs89pxpzg6a0";
     buildInputs = [ ppx_here ];
     propagatedBuildInputs = [ ppx_sexp_conv ];
@@ -162,7 +162,7 @@ rec {
   };
 
   typerep = janePackage {
-    name = "typerep";
+    pname = "typerep";
     hash = "00j4by75fl9niqvlpiyw6ymlmlmgfzysm8w25cj5wsfsh4yrgr74";
     propagatedBuildInputs = [ base ];
     meta.description = "Runtime types for OCaml";
@@ -170,7 +170,7 @@ rec {
 
   ppx_typerep_conv = janePackage {
     version = "0.11.1";
-    name = "ppx_typerep_conv";
+    pname = "ppx_typerep_conv";
     hash = "0a13dpfrrg0rsm8qni1bh7pqcda30l70z8r6yzi5a64bmwk7g5ah";
     buildInputs = [ ppxlib ];
     propagatedBuildInputs = [ ppx_deriving typerep ];
@@ -178,7 +178,7 @@ rec {
   };
 
   ppx_js_style = janePackage {
-    name = "ppx_js_style";
+    pname = "ppx_js_style";
     hash = "1cwqyrkykc8wi60grbid1w072fcvf7k0hd387jz7mxfw44qyb85g";
     propagatedBuildInputs = [ ppxlib octavius ];
     meta.description = "Code style checker for Jane Street Packages";
@@ -186,7 +186,7 @@ rec {
 
   ppx_enumerate = janePackage {
     version = "0.11.1";
-    name = "ppx_enumerate";
+    pname = "ppx_enumerate";
     hash = "0spx9k1v7vjjb6sigbfs69yndgq76v114jhxvzjmffw7q989cyhr";
     buildInputs = [ ppxlib ];
     propagatedBuildInputs = [ ppx_deriving ];
@@ -194,14 +194,14 @@ rec {
   };
 
   ppx_base = janePackage {
-    name = "ppx_base";
+    pname = "ppx_base";
     hash = "079caqjbxk1d33hy69017n3dwslqy52alvzjddwpdjb04vjadlk6";
     propagatedBuildInputs = [ ppx_compare ppx_enumerate ppx_hash ppx_js_style ];
     meta.description = "Base set of ppx rewriters";
   };
 
   ppx_bench = janePackage {
-    name = "ppx_bench";
+    pname = "ppx_bench";
     hash = "0z98r6y4lpj6dy265m771ylx126hq3v1zjsk74yqvpwwd63gx3jz";
     buildInputs = [ ppxlib ppx_inline_test ];
     meta.description = "Syntax extension for writing in-line benchmarks in OCaml code";
@@ -209,7 +209,7 @@ rec {
 
   ppx_bin_prot = janePackage {
     version = "0.11.1";
-    name = "ppx_bin_prot";
+    pname = "ppx_bin_prot";
     hash = "1h60i75bzvhna1axyn662gyrzhh441l79vl142d235i5x31dmnkz";
     buildInputs = [ ppxlib ppx_here ];
     propagatedBuildInputs = [ bin_prot ];
@@ -217,7 +217,7 @@ rec {
   };
 
   ppx_expect = janePackage {
-    name = "ppx_expect";
+    pname = "ppx_expect";
     hash = "1g0r67vfw9jr75pybiw4ysfiswlzyfpbj0gl91rx62gqdhjh1pga";
     buildInputs = [ ppx_assert ppx_custom_printf ppx_fields_conv ppx_here ppx_variants_conv re ];
     propagatedBuildInputs = [ fieldslib ppx_compare ppx_inline_test ppx_sexp_conv ];
@@ -225,21 +225,21 @@ rec {
   };
 
   ppx_fail = janePackage {
-    name = "ppx_fail";
+    pname = "ppx_fail";
     hash = "0d0xadcl7mhp81kspcd2b0nh75h34w5a6s6j9qskjjbjif87wiix";
     buildInputs = [ ppxlib ppx_here ];
     meta.description = "Add location to calls to failwiths";
   };
 
   ppx_let = janePackage {
-    name = "ppx_let";
+    pname = "ppx_let";
     hash = "1ckzwljlb78cdf6xxd24nddnmsihvjrnq75r1b255aj3xgkzsygx";
     buildInputs = [ ppxlib ];
     meta.description = "Monadic let-bindings";
   };
 
   ppx_optcomp = janePackage {
-    name = "ppx_optcomp";
+    pname = "ppx_optcomp";
     hash = "1rahkjq6vpffs7wdz1crgbxkdnlfkj1i3j12c2andy4fhj49glcm";
     buildInputs = [ ppxlib ];
     propagatedBuildInputs = [ ppx_deriving ];
@@ -247,21 +247,21 @@ rec {
   };
 
   ppx_optional = janePackage {
-    name = "ppx_optional";
+    pname = "ppx_optional";
     hash = "0aw3hvrsdjpw4ik7rf15ghak31vhdr1lgpphr18mj76rnlrhirmx";
     propagatedBuildInputs = [ ppxlib ];
     meta.description = "Pattern matching on flat options";
   };
 
   ppx_pipebang = janePackage {
-    name = "ppx_pipebang";
+    pname = "ppx_pipebang";
     hash = "0smgq587amlr3hivbbg153p83dj37w30cssp9cffc0v8kg84lfhr";
     buildInputs = [ ppxlib ];
     meta.description = "A ppx rewriter that inlines reverse application operators |> and |!";
   };
 
   ppx_sexp_value = janePackage {
-    name = "ppx_sexp_value";
+    pname = "ppx_sexp_value";
     hash = "107zwb580nrmc0l03dl3y3hf12s3c1vv8b8mz6sa4k5afp3s9nkl";
     buildInputs = [ ppx_here ];
     propagatedBuildInputs = [ ppx_sexp_conv ];
@@ -269,7 +269,7 @@ rec {
   };
 
   ppx_jane = janePackage {
-    name = "ppx_jane";
+    pname = "ppx_jane";
     hash = "0l1p6llaa60mrc5p9400cqv9yy6h76x5wfq3z1cx5xawy0yz4vlb";
     buildInputs = [ ppxlib ];
     propagatedBuildInputs = [ ppx_assert ppx_base ppx_bench ppx_bin_prot ppx_expect ppx_fail ppx_here ppx_let ppx_optcomp ppx_optional ppx_pipebang ppx_sexp_message ppx_sexp_value ppx_typerep_conv ];
@@ -277,7 +277,7 @@ rec {
   };
 
   splittable_random = janePackage {
-    name = "splittable_random";
+    pname = "splittable_random";
     hash = "1yrvpm6g62f8k6ihccxhfxpvmxbqxhi7p790a8jkdmyfdd1l6z73";
     propagatedBuildInputs = [ ppx_jane ];
     meta.description = "PRNG that can be split into independent streams";
@@ -285,7 +285,7 @@ rec {
 
   core_kernel = janePackage {
     version = "0.11.1";
-    name = "core_kernel";
+    pname = "core_kernel";
     hash = "1dg7ygy7i64c5gaakb1cp1b26p9ks81vbxmb8fd7jff2q60j2z2g";
     propagatedBuildInputs = [ configurator jane-street-headers sexplib splittable_random ];
     meta.description = "Jane Street's standard library overlay (kernel)";
@@ -293,35 +293,35 @@ rec {
 
   spawn = janePackage {
     version = "0.12.0";
-    name = "spawn";
+    pname = "spawn";
     hash = "0amgj7g9sjlbjivn1mg7yjdmxd21hgp4a0ak2zrm95dmm4gi846i";
     meta.description = "Spawning sub-processes";
   };
 
   core = janePackage {
     version = "0.11.2";
-    name = "core";
+    pname = "core";
     hash = "0vpsvd75lxb09il2rnzyib9mlr51v1hzqdc9fdxgx353pb5agh8a";
     propagatedBuildInputs = [ core_kernel spawn ];
     meta.description = "Jane Street's standard library overlay";
   };
 
   textutils_kernel = janePackage {
-    name = "textutils_kernel";
+    pname = "textutils_kernel";
     hash = "0s1ps7h54vgl76pll3y5qa1bw8f4h8wxc8mg8jq6bz8vxvl0dfv4";
     propagatedBuildInputs = [ core_kernel ];
     meta.description = "The subset of textutils using only core_kernel and working in javascript";
   };
 
   textutils = janePackage {
-    name = "textutils";
+    pname = "textutils";
     hash = "1jmhpaihnndf4pr8xsk7ws70n4mvv34ry0ggqqpfs3wb2vkcdg6j";
     propagatedBuildInputs = [ core textutils_kernel ];
     meta.description = "Text output utilities";
   };
 
   re2 = janePackage {
-    name = "re2";
+    pname = "re2";
     hash = "0bl65d0nmvr7k1mkkcc4aai86l5qzgn1xxwmszshpwhaz87cqghd";
     propagatedBuildInputs = [ core_kernel ];
     meta = {
@@ -331,7 +331,7 @@ rec {
   };
 
   core_extended = janePackage {
-    name = "core_extended";
+    pname = "core_extended";
     hash = "1fvnr6zkpbl48dl7nn3j1dpsrr6bi00iqh282wg5lgdhcsjbc0dy";
     propagatedBuildInputs = [ core re re2 textutils ];
     postPatch = ''
@@ -342,28 +342,28 @@ rec {
 
   async_kernel = janePackage {
     version = "0.11.1";
-    name = "async_kernel";
+    pname = "async_kernel";
     hash = "1ssv0gqbdns6by1wdjrrs35cj1c1n1qcfkxs8hj04b7x89wzvf1q";
     propagatedBuildInputs = [ core_kernel ];
     meta.description = "Jane Street Capital's asynchronous execution library (core)";
   };
 
   protocol_version_header = janePackage {
-    name = "protocol_version_header";
+    pname = "protocol_version_header";
     hash = "159qmkb0dsfmr1lv2ly50aqszpm24bvrm3sw07n2zhkxgy6q613z";
     propagatedBuildInputs = [ core_kernel ocaml-migrate-parsetree ];
     meta.description = "Protocol aware version negotiation";
   };
 
   async_rpc_kernel = janePackage {
-    name = "async_rpc_kernel";
+    pname = "async_rpc_kernel";
     hash = "0wl7kp30qxkalk91q5pja9agsvvmdjvb2q7s3m79dlvwwi11l33y";
     propagatedBuildInputs = [ core_kernel async_kernel protocol_version_header ];
     meta.description = "Platform-independent core of Async RPC library";
   };
 
   async_unix = janePackage {
-    name = "async_unix";
+    pname = "async_unix";
     hash = "1y5za5fdh0x82zdjigxci9zm9jnpfd2lfgpjcq4rih3s28f16sf7";
     propagatedBuildInputs = [ core async_kernel ];
     meta.description = "Jane Street Capital's asynchronous execution library (unix)";
@@ -371,91 +371,91 @@ rec {
 
   async_extra = janePackage {
     version = "0.11.1";
-    name = "async_extra";
+    pname = "async_extra";
     hash = "0dmplvqf41820rm5i0l9bx1xmmdlq8zsszi36y2rkjna8991f7s2";
     propagatedBuildInputs = [ async_rpc_kernel async_unix ];
     meta.description = "Jane Street's asynchronous execution library (extra)";
   };
 
   async = janePackage {
-    name = "async";
+    pname = "async";
     hash = "1i05hzk4mhzj1mw98b2bdbxhnq03jvhkkkw4d948i6265jzrrbv5";
     propagatedBuildInputs = [ async_extra ];
     meta.description = "Jane Street Capital's asynchronous execution library";
   };
 
   async_find = janePackage {
-    name = "async_find";
+    pname = "async_find";
     hash = "0s0qafx74ri1vr2vv3iy1j7s3p6gp7vyg0mw5g17iafk0w6lv2iq";
     propagatedBuildInputs = [ async ];
     meta.description = "Directory traversal with Async";
   };
 
   async_interactive = janePackage {
-    name = "async_interactive";
+    pname = "async_interactive";
     hash = "01rlfcylpiak6a2n6q3chp73cvkhvb65n906dj0flmxmagn7dxd1";
     propagatedBuildInputs = [ async ];
     meta.description = "Utilities for building simple command-line based user interfaces";
   };
 
   async_parallel = janePackage {
-    name = "async_parallel";
+    pname = "async_parallel";
     hash = "0hak8ba3rfzqhz5hz2annqmsv5bkqzdihhafp0f58ryrlskafwag";
     propagatedBuildInputs = [ async ];
     meta.description = "Distributed computing library";
   };
 
   async_shell = janePackage {
-    name = "async_shell";
+    pname = "async_shell";
     hash = "1jb01ygfnhabsy72xlcg11vp7rr37sg555sm0k3yxl4r5az3y2ay";
     propagatedBuildInputs = [ core_extended async ];
     meta.description = "Shell helpers for Async";
   };
 
   async_ssl = janePackage {
-    name = "async_ssl";
+    pname = "async_ssl";
     hash = "1p83fzfla4rb820irdrz3f2hp8kq5zrhw47rqmfv6qydlca1bq64";
     propagatedBuildInputs = [ async ctypes openssl ];
     meta.description = "Async wrappers for SSL";
   };
 
   sexp_pretty = janePackage {
-    name = "sexp_pretty";
+    pname = "sexp_pretty";
     hash = "0xskahjggbwvvb82fn0jp1didxbgpmgks76xhwp9s3vqkhgz6918";
     propagatedBuildInputs = [ ppx_base re sexplib ];
     meta.description = "S-expression pretty-printer";
   };
 
   expect_test_helpers_kernel = janePackage {
-    name = "expect_test_helpers_kernel";
+    pname = "expect_test_helpers_kernel";
     hash = "0m113vq4m1xm3wmwa08r6qjc7p5f0y3ss8s4i2z591ycgs2fxzlj";
     propagatedBuildInputs = [ core_kernel sexp_pretty ];
     meta.description = "Helpers for writing expectation tests";
   };
 
   expect_test_helpers = janePackage {
-    name = "expect_test_helpers";
+    pname = "expect_test_helpers";
     hash = "13n6h7mimwkbsjdix96ghfrmxjd036m4h4zgl8qag00aacqclvpi";
     propagatedBuildInputs = [ async expect_test_helpers_kernel ];
     meta.description = "Async helpers for writing expectation tests";
   };
 
   bignum = janePackage {
-    name = "bignum";
+    pname = "bignum";
     hash = "0hqd88fb90rsj1wjj4k79gigcf31c6a45msasw99zzifzppr3w3f";
     propagatedBuildInputs = [ core_kernel zarith num ];
     meta.description = "Core-flavoured wrapper around zarith's arbitrary-precision rationals";
   };
 
   cinaps = janePackage {
-    name = "cinaps";
+    pname = "cinaps";
     hash = "0f8cx4xkkk4wqpcbvva8kxdndbgawljp17dwppc6zpjpkjl8s84j";
     propagatedBuildInputs = [ re ];
     meta.description = "Trivial Metaprogramming tool using the OCaml toplevel";
   };
 
   command_rpc = janePackage {
-    name = "command_rpc";
+    pname = "command_rpc";
     hash = "111v4km0ds8ixmpmwg9ck36ap97400mqzhijf57kj6wfwgzcmr2g";
     propagatedBuildInputs = [ async ];
     meta.description = "Utilities for Versioned RPC communication with a child process over stdin and stdout";
@@ -464,49 +464,49 @@ rec {
   # Deprecated libraries
 
   ppx_ast = janePackage {
-    name = "ppx_ast";
+    pname = "ppx_ast";
     hash = "125bzswcwr3nb26ss8ydh8z4218c8fi3s2kvgqp1j1fhc5wwzqgj";
     propagatedBuildInputs = [ ppxlib ];
     meta.description = "Deprecated (see ppxlib)";
   };
 
   ppx_core = janePackage {
-    name = "ppx_core";
+    pname = "ppx_core";
     hash = "11hgm9mxig4cm3c827f6dns9mjv3pf8g6skf10x0gw9xnp1dmzmx";
     propagatedBuildInputs = [ ppxlib ];
     meta.description = "Deprecated (see ppxlib)";
   };
 
   ppx_driver = janePackage {
-    name = "ppx_driver";
+    pname = "ppx_driver";
     hash = "00kfx6js2kxk57k4v7hiqvwk7h35whgjihnxf75m82rnaf4yzvfi";
     propagatedBuildInputs = [ ppxlib ];
     meta.description = "Deprecated (see ppxlib)";
   };
 
   ppx_metaquot = janePackage {
-    name = "ppx_metaquot";
+    pname = "ppx_metaquot";
     hash = "1vz8bi56jsz8w0894vgbfsfvmdyh5k1dgv45l8vhkks0s7d3ldji";
     propagatedBuildInputs = [ ppxlib ];
     meta.description = "Deprecated (see ppxlib)";
   };
 
   ppx_traverse = janePackage {
-    name = "ppx_traverse";
+    pname = "ppx_traverse";
     hash = "1p2n5da4mxh9fk4gvxlibc706bs5xwkbppxd1x0ip1vln5pabbq5";
     propagatedBuildInputs = [ ppxlib ];
     meta.description = "Deprecated (see ppxlib)";
   };
 
   ppx_traverse_builtins = janePackage {
-    name = "ppx_traverse_builtins";
+    pname = "ppx_traverse_builtins";
     hash = "0qlf7i8h8k3a9h8nhb0ki3y1knr6wgbm24f1qaqni53fpvzv0pfb";
     propagatedBuildInputs = [ ppxlib ];
     meta.description = "Deprecated (see ppxlib)";
   };
 
   ppx_type_conv = janePackage {
-    name = "ppx_type_conv";
+    pname = "ppx_type_conv";
     hash = "04dbrglqqhkas25cpjz8xhjcbpk141c35qggzw66bn69izczfmaf";
     propagatedBuildInputs = [ ppxlib ];
     meta.description = "Deprecated (see ppxlib)";
@@ -515,35 +515,35 @@ rec {
   # Miscellaneous Jane Street packages
 
   core_bench = janePackage {
-    name = "core_bench";
+    pname = "core_bench";
     hash = "10i28ssfdqxxhq0rvnlp581lr1cq2apkhmm8j83fksjkmbxcrasc";
     propagatedBuildInputs = [ core_extended ];
     meta.description = "Micro-benchmarking library for OCaml";
   };
 
   core_profiler = janePackage {
-    name = "core_profiler";
+    pname = "core_profiler";
     hash = "1kaaw3jp3qarbd9rgpjfb9md0dqblf2bxiqb245sqmx4c1346v1c";
     propagatedBuildInputs = [ core_extended ];
     meta.description = "Profiling library";
   };
 
   csvfields = janePackage {
-    name = "csvfields";
+    pname = "csvfields";
     hash = "10zw4fjlniivfdzzz79lnbvcjnhk5y16m1p8mn4xbs23n6mbix0f";
     propagatedBuildInputs = [ core expect_test_helpers ];
     meta.description = "Runtime support for ppx_xml_conv and ppx_csv_conv";
   };
 
   ecaml = janePackage {
-    name = "ecaml";
+    pname = "ecaml";
     hash = "1is5156q59s427x3q5nh9wsi8h1x77670bmyilqxasy39yway7g8";
     propagatedBuildInputs = [ async expect_test_helpers_kernel ];
     meta.description = "Writing Emacs plugin in OCaml";
   };
 
   email_message = janePackage {
-    name = "email_message";
+    pname = "email_message";
     hash = "131jd72k4s8cdbgg6gyg7w5v8mphdlvdx4fgvh8d9a1m7kkvbxfg";
     propagatedBuildInputs = [ async angstrom core_extended cryptokit magic-mime ounit ];
     meta.description = "E-mail message parser";
@@ -551,28 +551,28 @@ rec {
 
   incremental_kernel = janePackage {
     version = "0.11.1";
-    name = "incremental_kernel";
+    pname = "incremental_kernel";
     hash = "1qp9dqncx2h0np0rndqaic4dna8f1dlkqnbjfcdhcim5dp2vg4x6";
     propagatedBuildInputs = [ core_kernel ];
     meta.description = "Library for incremental computations depending only on core_kernel";
   };
 
   incremental = janePackage {
-    name = "incremental";
+    pname = "incremental";
     hash = "1xchd3v4kj56wixjrsnj7m7l0374cgkzybihs2b62mn65xf6n7ki";
     propagatedBuildInputs = [ core incremental_kernel ];
     meta.description = "Library for incremental computations";
   };
 
   incr_map = janePackage {
-    name = "incr_map";
+    pname = "incr_map";
     hash = "01vx9aldxpigz5ah9h337xcw73a7r8449v8l2xbralljhs0zglx9";
     propagatedBuildInputs = [ incremental_kernel ];
     meta.description = "Helpers for incremental operations on map like data structures";
   };
 
   ocaml_plugin = janePackage {
-    name = "ocaml_plugin";
+    pname = "ocaml_plugin";
     hash = "0fal5j59qkbksg6ak1ngn92pcgg3f9gwfaglpxb7l6bck20kaigp";
     buildInputs = [ ocamlbuild ];
     propagatedBuildInputs = [ async ];
@@ -580,28 +580,28 @@ rec {
   };
 
   parsexp_io = janePackage {
-    name = "parsexp_io";
+    pname = "parsexp_io";
     hash = "0rhdl40jiirvv6fhgjk50n8wzs3jly5d8dyyyfgpjgl39mwkjjnb";
     propagatedBuildInputs = [ parsexp ppx_js_style ];
     meta.description = "S-expression parsing library (IO functions)";
   };
 
   patience_diff = janePackage {
-    name = "patience_diff";
+    pname = "patience_diff";
     hash = "0q7a64fgg97qcd6d8c45gyz63x5vq004axxqvvfg92b8f3x2plx4";
     propagatedBuildInputs = [ core_kernel ];
     meta.description = "Tool and library implementing patience diff";
   };
 
   posixat = janePackage {
-    name = "posixat";
+    pname = "posixat";
     hash = "04rs4sl0r4rg9m6l9kkqkmc4n87sv4a4w9ibq4zsjk9j4n6r2df8";
     propagatedBuildInputs = [ ppx_optcomp ppx_sexp_conv sexplib ];
     meta.description = "Binding to the posix *at functions";
   };
 
   rpc_parallel = janePackage {
-    name = "rpc_parallel";
+    pname = "rpc_parallel";
     hash = "13dx59x73i8mkwv2qkh8gx6kk8arlvghj57k1jdscdmzmyqc9gvn";
     propagatedBuildInputs = [ async ];
     meta.description = "Type-safe library for building parallel applications";
@@ -609,14 +609,14 @@ rec {
 
   shexp = janePackage {
     version = "0.11.1";
-    name = "shexp";
+    pname = "shexp";
     hash = "06yssp7bsmabaxvw9bqxyrsji1gkvl7if5adba3v6h4kilqy7rqg";
     propagatedBuildInputs = [ posixat spawn ];
     meta.description = "Process library and s-expression based shell";
   };
 
   topological_sort = janePackage {
-    name = "topological_sort";
+    pname = "topological_sort";
     hash = "1qnz5b1rs45lsl1ycxd1lglpmh8444gy5khhdp5fvxy987zkzklz";
     propagatedBuildInputs = [ core_kernel ];
     meta.description = "Topological sort algorithm";
diff --git a/pkgs/development/ocaml-modules/janestreet/janePackage.nix b/pkgs/development/ocaml-modules/janestreet/janePackage.nix
index 439c6f500bc9..b3ffecb38ce9 100644
--- a/pkgs/development/ocaml-modules/janestreet/janePackage.nix
+++ b/pkgs/development/ocaml-modules/janestreet/janePackage.nix
@@ -1,28 +1,19 @@
-{ stdenv, fetchFromGitHub, ocaml, dune, findlib, defaultVersion ? "0.11.0" }:
+{ stdenv, fetchFromGitHub, buildDunePackage, defaultVersion ? "0.11.0" }:
 
-{ name, version ? defaultVersion, buildInputs ? [], hash, meta, ...}@args:
+{ pname, version ? defaultVersion, hash, ...}@args:
 
-if !stdenv.lib.versionAtLeast ocaml.version "4.04"
-then throw "${name}-${version} is not available for OCaml ${ocaml.version}" else
-
-stdenv.mkDerivation (args // {
-  name = "ocaml${ocaml.version}-${name}-${version}";
+buildDunePackage (args // {
   inherit version;
 
+  minimumOCamlVersion = "4.04";
+
   src = fetchFromGitHub {
     owner = "janestreet";
-    repo = name;
+    repo = pname;
     rev = "v${version}";
     sha256 = hash;
   };
 
-  buildInputs = [ ocaml dune findlib ] ++ buildInputs;
-
-  inherit (dune) installPhase;
-
-  meta = {
-    license = stdenv.lib.licenses.asl20;
-    inherit (ocaml.meta) platforms;
-    homepage = "https://github.com/janestreet/${name}";
-  } // meta;
+  meta.license = stdenv.lib.licenses.asl20;
+  meta.homepage = "https://github.com/janestreet/${pname}";
 })
diff --git a/pkgs/development/ocaml-modules/janestreet/old.nix b/pkgs/development/ocaml-modules/janestreet/old.nix
index 27a65c502753..447a9cdf71f5 100644
--- a/pkgs/development/ocaml-modules/janestreet/old.nix
+++ b/pkgs/development/ocaml-modules/janestreet/old.nix
@@ -7,7 +7,7 @@ rec {
   # Jane Street packages, up to ppx_core
 
   sexplib = janePackage {
-    name = "sexplib";
+    pname = "sexplib";
     meta.description = "Automated S-expression conversion";
     version = "0.10.0";
     hash = "1agw649n0rnf6h4y2dr1zs1970nncxgjmf90848vbxv8y9im4yy2";
@@ -15,7 +15,7 @@ rec {
   };
 
   base = janePackage {
-    name = "base";
+    pname = "base";
     version = "0.9.4";
     hash = "0x85xi66b4zwlbdwmyc99zcmawgpp75gxqbl55rr67awavw162rw";
     propagatedBuildInputs = [ sexplib ];
@@ -23,13 +23,13 @@ rec {
   };
 
   ocaml-compiler-libs = janePackage {
-    name = "ocaml-compiler-libs";
+    pname = "ocaml-compiler-libs";
     hash = "1jz3nfrb6295sj4xj1j0zld8mhfj0xy2k4vlp9yf9sh3748n090l";
     meta.description = "OCaml compiler libraries repackaged";
   };
 
   ppx_ast = janePackage ({
-    name = "ppx_ast";
+    pname = "ppx_ast";
     propagatedBuildInputs = [ ocaml-compiler-libs ocaml-migrate-parsetree ];
     meta.description = "OCaml AST used by Jane Street ppx rewriters";
   } // (if lib.versionAtLeast ocaml.version "4.06"
@@ -43,13 +43,13 @@ rec {
   ));
 
   ppx_traverse_builtins = janePackage {
-    name = "ppx_traverse_builtins";
+    pname = "ppx_traverse_builtins";
     hash = "10ajvz02ka6qimlfrq7py4ljhk8awqkga6240kn8j046b4xfyxzi";
     meta.description = "Builtins for Ppx_traverse";
   };
 
   stdio = janePackage {
-    name = "stdio";
+    pname = "stdio";
     version = "0.9.1";
     hash = "13rj3ii0rvmklfim9ild0ib44ssdadig7a9ccjbz22m0pw84a1sx";
     propagatedBuildInputs = [ base ];
@@ -57,7 +57,7 @@ rec {
   };
 
   ppx_core = janePackage {
-    name = "ppx_core";
+    pname = "ppx_core";
     hash = "15400zxxkqdimmjpdjcs36gcbxbrhylmaczlzwd6x65v1h9aydz3";
     propagatedBuildInputs = [ ppx_ast ppx_traverse_builtins stdio ];
     meta.description = "Jane Street's standard library for ppx rewriters";
@@ -66,14 +66,14 @@ rec {
   # Jane Street packages, up to ppx_base
 
   ppx_optcomp = janePackage {
-    name = "ppx_optcomp";
+    pname = "ppx_optcomp";
     hash = "1wfj6fnh92s81yncq7yyhmax7j6zpjj1sg1f3qa1f9c5kf4kkzrd";
     propagatedBuildInputs = [ ppx_core ];
     meta.description = "Optional compilation for OCaml";
   };
 
   ppx_driver = janePackage {
-    name = "ppx_driver";
+    pname = "ppx_driver";
     version = "0.9.1";
     hash = "1amz49x6v4sh1v2my6618cah0zv5i7jmsapbk9ydps6419g5asay";
     buildInputs = [ ocamlbuild ];
@@ -82,56 +82,56 @@ rec {
   };
 
   ppx_metaquot = janePackage {
-    name = "ppx_metaquot";
+    pname = "ppx_metaquot";
     hash = "15qfd3s4x2pz006nx5316laxd3gqqi472x432qg4rfx4yh3vn31k";
     propagatedBuildInputs = [ ppx_driver ];
     meta.description = "Metaquotations for ppx_ast";
   };
 
   ppx_type_conv = janePackage {
-    name = "ppx_type_conv";
+    pname = "ppx_type_conv";
     hash = "0a0gxjvjiql9vg37k0akn8xr5724nv3xb7v37xpidv7ld927ks7p";
     propagatedBuildInputs = [ ppx_metaquot ppx_deriving ];
     meta.description = "Support Library for type-driven code generators";
   };
 
   ppx_sexp_conv = janePackage {
-    name = "ppx_sexp_conv";
+    pname = "ppx_sexp_conv";
     hash = "03cg2sym0wvpd5l7q4w9bclp589z5byygwsmnnq9h1ih56cmd55l";
     propagatedBuildInputs = [ ppx_type_conv sexplib ];
     meta.description = "Generation of S-expression conversion functions from type definitions";
   };
 
   ppx_compare = janePackage {
-    name = "ppx_compare";
+    pname = "ppx_compare";
     hash = "0wrszpvn1nms5sb5rb29p7z1wmqyd15gfzdj4ax8f843p5ywx3w9";
     propagatedBuildInputs = [ ppx_type_conv ];
     meta.description = "Generation of comparison functions from types";
   };
 
   ppx_enumerate = janePackage {
-    name = "ppx_enumerate";
+    pname = "ppx_enumerate";
     hash = "1dfy86j2z12p5n9yrwaakx1ngphs5246vxy279kz6i6j34cwxm46";
     propagatedBuildInputs = [ ppx_type_conv ];
     meta.description = "Generate a list containing all values of a finite type";
   };
 
   ppx_hash = janePackage {
-    name = "ppx_hash";
+    pname = "ppx_hash";
     hash = "1w1riy2sqd9i611sc5f5z2rqqgjl2gvvkzi5xibpv309nacnl01d";
     propagatedBuildInputs = [ ppx_compare ppx_sexp_conv ];
     meta.description = "A ppx rewriter that generates hash functions from type expressions and definitions";
   };
 
   ppx_js_style = janePackage {
-    name = "ppx_js_style";
+    pname = "ppx_js_style";
     hash = "09k02b1l2r7svf9l3ls69h8xydsyiang2ziigxnny2i7gy7b0w59";
     propagatedBuildInputs = [ ppx_metaquot octavius ];
     meta.description = "Code style checker for Jane Street Packages";
   };
 
   ppx_base = janePackage {
-    name = "ppx_base";
+    pname = "ppx_base";
     hash = "0qikfzbkd2wyxfrvizz6rgi6vg4ykvxkivacj4gr178dbgfl5if3";
     propagatedBuildInputs = [ ppx_enumerate ppx_hash ppx_js_style ];
     meta.description = "Base set of ppx rewriters";
@@ -140,49 +140,49 @@ rec {
   # Jane Street packages, up to ppx_bin_prot
 
   fieldslib = janePackage {
-    name = "fieldslib";
+    pname = "fieldslib";
     hash = "1wxh59888l1bfz9ipnbcas58gwg744icaixzdbsg4v8f7wymc501";
     propagatedBuildInputs = [ ppx_driver ];
     meta.description = "OCaml record fields as first class values";
   };
 
   variantslib = janePackage {
-    name = "variantslib";
+    pname = "variantslib";
     hash = "0kj53n62193j58q9vip8lfhhyf6w9d25wyvxzc163hx5m68yw0fz";
     propagatedBuildInputs = [ ppx_driver ];
     meta.description = "OCaml variants as first class values";
   };
 
   ppx_traverse = janePackage {
-    name = "ppx_traverse";
+    pname = "ppx_traverse";
     hash = "1sdqgwyq0w71i03vhc5jq4jk6rsbgwhvain48fnrllpkb5kj2la2";
     propagatedBuildInputs = [ ppx_type_conv ];
     meta.description = "Automatic generation of open recursion classes";
   };
 
   ppx_custom_printf = janePackage {
-    name = "ppx_custom_printf";
+    pname = "ppx_custom_printf";
     hash = "0cjy2c2c5g3qxqvwx1yb6p7kbmmpnpb1hll55f7a44x215lg8x19";
     propagatedBuildInputs = [ ppx_sexp_conv ppx_traverse ];
     meta.description = "Printf-style format-strings for user-defined string conversion";
   };
 
   ppx_fields_conv = janePackage {
-    name = "ppx_fields_conv";
+    pname = "ppx_fields_conv";
     hash = "0qp8zgmk58iskzrkf4g06i471kg6lrh3wqpy9klrb8pp9mg0xr9z";
     propagatedBuildInputs = [ fieldslib ppx_type_conv ];
     meta.description = "Generation of accessor and iteration functions for OCaml records";
   };
 
   ppx_variants_conv = janePackage {
-    name = "ppx_variants_conv";
+    pname = "ppx_variants_conv";
     hash = "1xayhyglgbdjqvb9123kjbwjcv0a3n3302nb0j7g8gmja8w5y834";
     propagatedBuildInputs = [ ppx_type_conv variantslib ];
     meta.description = "Generation of accessor and iteration functions for OCaml variant types";
   };
 
   bin_prot = janePackage {
-    name = "bin_prot";
+    pname = "bin_prot";
     version = "0.9.1";
     hash = "1bgcmkgz6b5i522996x589zsaiy5b3h37887lwbqvpps8by2ayvk";
     propagatedBuildInputs = [ ppx_compare ppx_custom_printf ppx_fields_conv ppx_variants_conv ];
@@ -190,14 +190,14 @@ rec {
   };
 
   ppx_here = janePackage {
-    name = "ppx_here";
+    pname = "ppx_here";
     hash = "0pjscw5ydxgy4fcxakgsazpp09ka057w5n2fp2dpkv2k5gil6rzh";
     propagatedBuildInputs = [ ppx_driver ];
     meta.description = "Expands [%here] into its location";
   };
 
   ppx_bin_prot = janePackage {
-    name = "ppx_bin_prot";
+    pname = "ppx_bin_prot";
     hash = "0qw9zqrc5yngzrzpk9awnlnd68xrb7wz5lq807c80ibxk0xvnqn3";
     propagatedBuildInputs = [ ppx_here bin_prot ];
     meta.description = "Generation of bin_prot readers and writers from types";
@@ -206,14 +206,14 @@ rec {
   # Jane Street packages, up to ppx_jane
 
   ppx_assert = janePackage {
-    name = "ppx_assert";
+    pname = "ppx_assert";
     hash = "1s5c75wkc46nlcwmgic5h7f439s26ssrzrcil501c5kpib2hlv6z";
     propagatedBuildInputs = [ ppx_sexp_conv ppx_here ppx_compare ];
     meta.description = "Assert-like extension nodes that raise useful errors on failure";
   };
 
   ppx_inline_test = janePackage {
-    name = "ppx_inline_test";
+    pname = "ppx_inline_test";
     version = "0.9.2";
     hash = "17j36ihiqprbpa2bk02449k93vaidid2sly5djrk848ccjq8n5aa";
     propagatedBuildInputs = [ ppx_metaquot ];
@@ -221,77 +221,77 @@ rec {
   };
 
   typerep = janePackage {
-    name = "typerep";
+    pname = "typerep";
     hash = "0hlc0xiznli1k6azv2mhm1s4xghhxqqd957np7828bfp7r8n2jy3";
     propagatedBuildInputs = [ base ];
     meta.description = "Runtime types for OCaml";
   };
 
   ppx_bench = janePackage {
-    name = "ppx_bench";
+    pname = "ppx_bench";
     hash = "1qk4y6c2mpw7bqjppi2nam74vs2sc89wzq162j92wsqxyqsv4p93";
     propagatedBuildInputs = [ ppx_inline_test ];
     meta.description = "Syntax extension for writing in-line benchmarks in OCaml code";
   };
 
   ppx_expect = janePackage {
-    name = "ppx_expect";
+    pname = "ppx_expect";
     hash = "1bik53k51wcqv088f0h10n3ms9h51yvg6ha3g1s903i2bxr3xs6b";
     propagatedBuildInputs = [ ppx_inline_test ppx_fields_conv ppx_custom_printf ppx_assert ppx_variants_conv re ];
     meta.description = "Cram like framework for OCaml";
   };
 
   ppx_fail = janePackage {
-    name = "ppx_fail";
+    pname = "ppx_fail";
     hash = "0qz0vlazasjyg7cv3iwpzxlvsah3zmn9dzd029xxqr1bji067s32";
     propagatedBuildInputs = [ ppx_here ppx_metaquot ];
     meta.description = "Add location to calls to failwiths";
   };
 
   ppx_let = janePackage {
-    name = "ppx_let";
+    pname = "ppx_let";
     hash = "1b914a5nynwxjvfx42v61yigvjhnd548m4yqjfchf38dmqi1f4nr";
     propagatedBuildInputs = [ ppx_driver ];
     meta.description = "Monadic let-bindings";
   };
 
   ppx_optional = janePackage {
-    name = "ppx_optional";
+    pname = "ppx_optional";
     hash = "1vknsarxba0zcp5k2jb31wfpvqrv3bpanxbahfl5s2fwspsfdc82";
     propagatedBuildInputs = [ ppx_metaquot ];
     meta.description = "Pattern matching on flat options";
   };
 
   ppx_pipebang = janePackage {
-    name = "ppx_pipebang";
+    pname = "ppx_pipebang";
     hash = "1wyfyyjvyi94ds1p90l60wdr85q2v3fq1qdf3gnv9zjfy6sb0g9h";
     propagatedBuildInputs = [ ppx_metaquot ];
     meta.description = "A ppx rewriter that inlines reverse application operators |> and |!";
   };
 
   ppx_sexp_message = janePackage {
-    name = "ppx_sexp_message";
+    pname = "ppx_sexp_message";
     hash = "0r0skyr1zf2jh48xrxbs45gzywynhlivkq24xwc0qq435fmc2jqv";
     propagatedBuildInputs = [ ppx_sexp_conv ppx_here ];
     meta.description = "A ppx rewriter for easy construction of s-expressions";
   };
 
   ppx_sexp_value = janePackage {
-    name = "ppx_sexp_value";
+    pname = "ppx_sexp_value";
     hash = "0hha5mmx700m8fy9g4znb8278l09chgwlpshny83vsmmzgq2jhah";
     propagatedBuildInputs = [ ppx_sexp_conv ppx_here ];
     meta.description = "A ppx rewriter that simplifies building s-expressions from OCaml values";
   };
 
   ppx_typerep_conv = janePackage {
-    name = "ppx_typerep_conv";
+    pname = "ppx_typerep_conv";
     hash = "0bzgfpbqijwxm8x9jq1zb4xi5sbzymk17lw5rylri3hf84p60aq1";
     propagatedBuildInputs = [ ppx_type_conv typerep ];
     meta.description = "Generation of runtime types from type declarations";
   };
 
   ppx_jane = janePackage {
-    name = "ppx_jane";
+    pname = "ppx_jane";
     hash = "16m5iw0qyp452nqj83kd0g0x3rw40lrz7392hwpd4di1wi6v2qzc";
     propagatedBuildInputs = [ ppx_base ppx_bench ppx_bin_prot ppx_expect ppx_fail ppx_let ppx_optional ppx_pipebang ppx_sexp_message ppx_sexp_value ppx_typerep_conv ];
     meta.description = "Standard Jane Street ppx rewriters";
@@ -300,7 +300,7 @@ rec {
   # Jane Street packages, up to core
 
   configurator = janePackage {
-    name = "configurator";
+    pname = "configurator";
     version = "0.9.1";
     hash = "1q0s0ghcrcrxdj6zr9zr27g7sr4qr9l14kizjphwqwwvgbzawdix";
     propagatedBuildInputs = [ ppx_base ];
@@ -308,26 +308,26 @@ rec {
   };
 
   jane-street-headers = janePackage {
-    name = "jane-street-headers";
+    pname = "jane-street-headers";
     hash = "0cdab6sblsidjbwvyvmspykyhqh44rpsjzi2djbfd5m4vh2h14gy";
     meta.description = "Jane Street header files";
   };
 
   core_kernel = janePackage {
-    name = "core_kernel";
+    pname = "core_kernel";
     hash = "05iwvggx9m81x7ijgv9gcv5znf5rmsmb76dg909bm9gkr3hbh7wh";
     propagatedBuildInputs = [ configurator jane-street-headers ppx_jane ];
     meta.description = "Jane Street's standard library overlay (kernel)";
   };
 
   spawn = janePackage {
-    name = "spawn";
+    pname = "spawn";
     hash = "1w53b8ni06ajj62yaqjy0pkbm952l0m5fzr088yk15078qaxsnb5";
     meta.description = "Spawning sub-processes";
   };
 
   core = janePackage {
-    name = "core";
+    pname = "core";
     version = "0.9.1";
     hash = "1643r0namsgj8xwfr9niimcdwyyq4ddiwd02d73ipb4a8710aqi8";
     propagatedBuildInputs = [ core_kernel spawn ];
@@ -337,7 +337,7 @@ rec {
   # Jane Street packages, up to core_extended
 
   re2 = janePackage {
-    name = "re2";
+    pname = "re2";
     hash = "1qmhl3yd6y0lq401rz72b1bsbpglb0wighpxn3x8y1ixq415p4xi";
     propagatedBuildInputs = [ core_kernel ];
     meta = {
@@ -347,14 +347,14 @@ rec {
   };
 
   textutils = janePackage {
-    name = "textutils";
+    pname = "textutils";
     hash = "1y6j2qw7rc8d80343lfv1dygnfrhn2qllz57mx28pl5kan743f6d";
     propagatedBuildInputs = [ core ];
     meta.description = "Text output utilities";
   };
 
   core_extended = janePackage {
-    name = "core_extended";
+    pname = "core_extended";
     hash = "05cnzzj0kigz9c9gsmd6mfar82wmkbqm9qzrydb80sy2fz5b30rk";
     propagatedBuildInputs = [ core re2 textutils ];
     postPatch = ''
@@ -368,63 +368,63 @@ rec {
   # Jane Street async packages
 
   async_kernel = janePackage {
-    name = "async_kernel";
+    pname = "async_kernel";
     hash = "1zwxhzy7f9900rcjls2fql9cpfmwrcah3fazzdz4h2i51f41w62x";
     propagatedBuildInputs = [ core_kernel ];
     meta.description = "Jane Street Capital's asynchronous execution library (core)";
   };
 
   async_rpc_kernel = janePackage {
-    name = "async_rpc_kernel";
+    pname = "async_rpc_kernel";
     hash = "1xk3s6s3xkj182p10kig2cqy8md6znif3v661h9cd02n8s57c40b";
     propagatedBuildInputs = [ core_kernel async_kernel ];
     meta.description = "Platform-independent core of Async RPC library";
   };
 
   async_unix = janePackage {
-    name = "async_unix";
+    pname = "async_unix";
     hash = "0yd4z28j5vdj2zxqi0fkgh2ic1s9h740is2dk0raga0zr5a1z03d";
     propagatedBuildInputs = [ core async_kernel ];
     meta.description = "Jane Street Capital's asynchronous execution library (unix)";
   };
 
   async_extra = janePackage {
-    name = "async_extra";
+    pname = "async_extra";
     hash = "0rpy5lc5dh5mir7flq1jrppd8imby8wyw191yg4nmklg28xp5sx0";
     propagatedBuildInputs = [ async_rpc_kernel async_unix ];
     meta.description = "Jane Street's asynchronous execution library (extra)";
   };
 
   async = janePackage {
-    name = "async";
+    pname = "async";
     hash = "10ykzym19srgdiikj0s74dndx5nk15hjq1r2hc61iz48f6caxkb1";
     propagatedBuildInputs = [ async_extra ];
     meta.description = "Jane Street Capital's asynchronous execution library";
   };
 
   async_find = janePackage {
-    name = "async_find";
+    pname = "async_find";
     hash = "11dmhdzgf5kn4m0cm6zr28wpwhi2kr4lak9nmgxbrxsq28bcncxq";
     propagatedBuildInputs = [ async ];
     meta.description = "Directory traversal with Async";
   };
 
   async_interactive = janePackage {
-    name = "async_interactive";
+    pname = "async_interactive";
     hash = "1mmqqp6bi2wg7bmgf0sw34jn3iyl5kbm200dax8yqq6rfprcs49j";
     propagatedBuildInputs = [ async ];
     meta.description = "Utilities for building simple command-line based user interfaces";
   };
 
   async_parallel = janePackage {
-    name = "async_parallel";
+    pname = "async_parallel";
     hash = "0mdprhr1pv4g65g10gr3gaifrzknsdgarwfdbjlvhzfs86075kyn";
     propagatedBuildInputs = [ async ];
     meta.description = "Distributed computing library";
   };
 
   async_shell = janePackage {
-    name = "async_shell";
+    pname = "async_shell";
     hash = "02clpz3xv3i5avzifwalylb9gfxzpgnr8bnlfsjixxfk2m7kvsj2";
     propagatedBuildInputs = [ core_extended async ];
     meta = {
@@ -433,7 +433,7 @@ rec {
   };
 
   async_ssl = janePackage {
-    name = "async_ssl";
+    pname = "async_ssl";
     hash = "01w3bg38q61lc3hfh8jsr0sy1ylyv0m6g6h9yvsk8ngj6qk70nss";
     propagatedBuildInputs = [ async ctypes openssl ];
     meta.description = "Async wrappers for SSL";
@@ -442,21 +442,21 @@ rec {
   # Jane Street packages, up to expect_test_helpers
 
   sexp_pretty = janePackage {
-    name = "sexp_pretty";
+    pname = "sexp_pretty";
     hash = "1bx8va468j5b813m0vsh1jzgb6h2qnnjfmjlf2hb82sarv8lllfx";
     propagatedBuildInputs = [ ppx_base re ];
     meta.description = "S-expression pretty-printer";
   };
 
   expect_test_helpers_kernel = janePackage {
-    name = "expect_test_helpers_kernel";
+    pname = "expect_test_helpers_kernel";
     hash = "1ycqir8sqgq5nialnrfg29nqn0cqg6jjpgv24drdycdhqf5r2zg6";
     propagatedBuildInputs = [ core_kernel sexp_pretty ];
     meta.description = "Helpers for writing expectation tests";
   };
 
   expect_test_helpers = janePackage {
-    name = "expect_test_helpers";
+    pname = "expect_test_helpers";
     hash = "0rsh6rwbqfcrqisk8jp7srlnicsadbzrs02ri6zyx0p3lmznw5r2";
     propagatedBuildInputs = [ async expect_test_helpers_kernel ];
     meta.description = "Async helpers for writing expectation tests";
@@ -465,28 +465,28 @@ rec {
   # Miscellaneous Jane Street packages
 
   bignum = janePackage {
-    name = "bignum";
+    pname = "bignum";
     hash = "0g80mzsi7vc1kq4mzha8y9nl95h6cd041vix3wjrqgkdvb1qd4f3";
     propagatedBuildInputs = [ core_kernel zarith ];
     meta.description = "Core-flavoured wrapper around zarith's arbitrary-precision rationals";
   };
 
   cinaps = janePackage {
-    name = "cinaps";
+    pname = "cinaps";
     hash = "02fpjiwrygkpx2q4jfldhbqh0mqxmf955wizr8k4vmsq4wsis0p5";
     propagatedBuildInputs = [ re ];
     meta.description = "Trivial Metaprogramming tool using the OCaml toplevel";
   };
 
   command_rpc = janePackage {
-    name = "command_rpc";
+    pname = "command_rpc";
     hash = "0w58z9jkz5qzbvf33wrzhfshzdvnrphj6dq8dmi52ykhfvxm7824";
     propagatedBuildInputs = [ async ];
     meta.description = "Utilities for Versioned RPC communication with a child process over stdin and stdout";
   };
 
   core_bench = janePackage {
-    name = "core_bench";
+    pname = "core_bench";
     hash = "1m2q7217nmcsck29i59djkm0h6z3aj0i01niijzr5f6ilbnmyd3h";
     propagatedBuildInputs = [ core_extended ];
     meta = {
@@ -495,7 +495,7 @@ rec {
   };
 
   core_profiler = janePackage {
-    name = "core_profiler";
+    pname = "core_profiler";
     hash = "1ir2v3wdfbf5xzqcma16asc73mkx2q6dzq5y1bx6q1rpa7iznx44";
     propagatedBuildInputs = [ core_extended ];
     meta = {
@@ -504,21 +504,21 @@ rec {
   };
 
   csvfields = janePackage {
-    name = "csvfields";
+    pname = "csvfields";
     hash = "0lbvs1kwl22ryxhw6s089f6683hj2920bn518mvr22rnv7qijy0v";
     propagatedBuildInputs = [ core ];
     meta.description = "Runtime support for ppx_xml_conv and ppx_csv_conv";
   };
 
   ecaml = janePackage {
-    name = "ecaml";
+    pname = "ecaml";
     hash = "1a2534bzbwgpm71aj3sm71sm0lkcjdfjj1mk91p1pg9kxn8c5x4i";
     propagatedBuildInputs = [ async ];
     meta.description = "Writing Emacs plugin in OCaml";
   };
 
   email_message = janePackage {
-    name = "email_message";
+    pname = "email_message";
     hash = "0cpaf6wn5g883bxdz029bksvrfzih99m7hzbb30fhqglmpmmkniz";
     propagatedBuildInputs = [ async core_extended cryptokit magic-mime ounit ];
     meta = {
@@ -527,28 +527,28 @@ rec {
   };
 
   incremental_kernel = janePackage {
-    name = "incremental_kernel";
+    pname = "incremental_kernel";
     hash = "0zq48wbgqcflh84n10iygi8aa3f0zzmgc7r0jwvsyg7i8zccgvf5";
     propagatedBuildInputs = [ core_kernel ];
     meta.description = "Library for incremental computations depending only on core_kernel";
   };
 
   incremental = janePackage {
-    name = "incremental";
+    pname = "incremental";
     hash = "05sx8ia46v4dlvzcn7xgjcwxvbd0wmvv9r2bpvniapjnwr1nvcfh";
     propagatedBuildInputs = [ core incremental_kernel ];
     meta.description = "Library for incremental computations";
   };
 
   incr_map = janePackage {
-    name = "incr_map";
+    pname = "incr_map";
     hash = "0358qg9irxbbhn18laqww3mn43mdwvlbr0h2mvg3vdbb2c5jp4fv";
     propagatedBuildInputs = [ incremental_kernel ];
     meta.description = "Helpers for incremental operations on map like data structures";
   };
 
   ocaml_plugin = janePackage {
-    name = "ocaml_plugin";
+    pname = "ocaml_plugin";
     hash = "0q33swnlx9p1gcn1aj95501kapb7cnbzbsavid69csczwmzcxr14";
     buildInputs = [ ocamlbuild ];
     propagatedBuildInputs = [ async ];
@@ -556,28 +556,28 @@ rec {
   };
 
   parsexp = janePackage {
-    name = "parsexp";
+    pname = "parsexp";
     hash = "0brrifvnfqbfk873v6y5b2jixs2d73hpispj9r440kca5cfsv23b";
     propagatedBuildInputs = [ ppx_compare ppx_fields_conv ppx_js_style ppx_sexp_value ];
     meta.description = "S-expression parsing library";
   };
 
   parsexp_io = janePackage {
-    name = "parsexp_io";
+    pname = "parsexp_io";
     hash = "0gcmh4dg48xgszladq92yhk1hf492zf0smz462xrwknzlfdkz6a5";
     propagatedBuildInputs = [ parsexp ];
     meta.description = "S-expression parsing library (IO functions)";
   };
 
   patience_diff = janePackage {
-    name = "patience_diff";
+    pname = "patience_diff";
     hash = "0vpx9xj1ich5qmj3m26vlmix3nsdj7pd1xzhqwbc7ad2kqwy3grg";
     propagatedBuildInputs = [ core_kernel ];
     meta.description = "Tool and library implementing patience diff";
   };
 
   posixat = janePackage {
-    name = "posixat";
+    pname = "posixat";
     hash = "0ak93dyzi6sc6gb0j07fj85b24d8bv6g2hm7jj5xwb39kjwh51jl";
     propagatedBuildInputs = [ ppx_sexp_conv ];
     meta.description = "Binding to the posix *at functions";
@@ -585,28 +585,28 @@ rec {
   };
 
   rpc_parallel = janePackage {
-    name = "rpc_parallel";
+    pname = "rpc_parallel";
     hash = "0s72msl2p27bz0knjlpgy5qwp0w4z76cq801ps0sab35f8jjfs38";
     propagatedBuildInputs = [ async ];
     meta.description = "Type-safe library for building parallel applications";
   };
 
   shexp = janePackage {
-    name = "shexp";
+    pname = "shexp";
     hash = "1fkz4l9z4i0fz2kccd5blm2j9x2x4z6y1cn29wjmc3spqfxbq37y";
     propagatedBuildInputs = [ posixat spawn ];
     meta.description = "Process library and s-expression based shell";
   };
 
   topological_sort = janePackage {
-    name = "topological_sort";
+    pname = "topological_sort";
     hash = "1d64fyq0clsgham9p1f5rk01z8pxalglp92xmqw2iznyw0vxhvsy";
     propagatedBuildInputs = [ core_kernel ];
     meta.description = "Topological sort algorithm";
   };
 
   typerep_extended = janePackage {
-    name = "typerep_extended";
+    pname = "typerep_extended";
     hash = "15gq8mrvlipd616rffr3f0wqw5d0ijnnizix610g2d5viirh0j9p";
     propagatedBuildInputs = [ core_kernel ];
     meta.description = "Runtime types for OCaml (Extended)";
diff --git a/pkgs/development/ocaml-modules/lambda-term/default.nix b/pkgs/development/ocaml-modules/lambda-term/default.nix
index ba68c0463f8f..18fe235710f8 100644
--- a/pkgs/development/ocaml-modules/lambda-term/default.nix
+++ b/pkgs/development/ocaml-modules/lambda-term/default.nix
@@ -1,26 +1,19 @@
-{ stdenv, fetchurl, libev, ocaml, findlib, dune
-, zed, lwt_log, lwt_react
-}:
+{ stdenv, fetchurl, libev, buildDunePackage, zed, lwt_log, lwt_react }:
 
-assert stdenv.lib.versionAtLeast ocaml.version "4.02";
-
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+  pname = "lambda-term";
   version = "1.13";
-  name = "ocaml${ocaml.version}-lambda-term-${version}";
+
+  minimumOCamlVersion = "4.02";
 
   src = fetchurl {
-    url = "https://github.com/diml/lambda-term/archive/${version}.tar.gz";
+    url = "https://github.com/diml/${pname}/archive/${version}.tar.gz";
     sha256 = "1hy5ryagqclgdm9lzh1qil5mrynlypv7mn6qm858hdcnmz9zzn0l";
   };
 
-  buildInputs = [ libev ocaml findlib dune ];
-
+  buildInputs = [ libev ];
   propagatedBuildInputs = [ zed lwt_log lwt_react ];
 
-  buildPhase = "dune build -p lambda-term";
-
-  inherit (dune) installPhase;
-
   hasSharedObjects = true;
 
   meta = { description = "Terminal manipulation library for OCaml";
@@ -41,7 +34,6 @@ stdenv.mkDerivation rec {
 
     homepage = https://github.com/diml/lambda-term;
     license = stdenv.lib.licenses.bsd3;
-    platforms = ocaml.meta.platforms or [];
     maintainers = [
       stdenv.lib.maintainers.gal_bolle
     ];
diff --git a/pkgs/development/ocaml-modules/linenoise/default.nix b/pkgs/development/ocaml-modules/linenoise/default.nix
index e7120ad38572..b6b9b4163ff9 100644
--- a/pkgs/development/ocaml-modules/linenoise/default.nix
+++ b/pkgs/development/ocaml-modules/linenoise/default.nix
@@ -1,29 +1,24 @@
-{ stdenv, fetchFromGitHub, ocaml, dune, findlib, result }:
+{ stdenv, fetchFromGitHub, buildDunePackage, result }:
 
-if !stdenv.lib.versionAtLeast ocaml.version "4.02"
-then throw "linenoise is not available for OCaml ${ocaml.version}"
-else
-
-stdenv.mkDerivation rec {
-  name = "ocaml${ocaml.version}-linenoise-${version}";
+buildDunePackage rec {
+  pname = "linenoise";
   version = "1.1.0";
+
+  minimumOCamlVersion = "4.02";
+
   src = fetchFromGitHub {
     owner = "fxfactorial";
-    repo = "ocaml-linenoise";
+    repo = "ocaml-${pname}";
     rev = "v${version}";
     sha256 = "1h6rqfgmhmd7p5z8yhk6zkbrk4yzw1v2fgwas2b7g3hqs6y0xj0q";
   };
 
-  buildInputs = [ ocaml findlib dune ];
   propagatedBuildInputs = [ result ];
 
-  inherit (dune) installPhase;
-
   meta = {
     description = "OCaml bindings to linenoise";
     license = stdenv.lib.licenses.bsd3;
     maintainers = [ stdenv.lib.maintainers.vbgl ];
-    inherit (ocaml.meta) platforms;
     inherit (src.meta) homepage;
   };
 }
diff --git a/pkgs/development/ocaml-modules/lwt/4.x.nix b/pkgs/development/ocaml-modules/lwt/4.x.nix
index f43a65065b92..105104bc308d 100644
--- a/pkgs/development/ocaml-modules/lwt/4.x.nix
+++ b/pkgs/development/ocaml-modules/lwt/4.x.nix
@@ -1,35 +1,29 @@
-{ stdenv, fetchzip, pkgconfig, ncurses, libev, dune
-, ocaml, findlib, cppo
-, ocaml-migrate-parsetree, ppx_tools_versioned, result
+{ stdenv, fetchzip, pkgconfig, ncurses, libev, buildDunePackage, ocaml
+, cppo, ocaml-migrate-parsetree, ppx_tools_versioned, result
 }:
 
 let inherit (stdenv.lib) optional versionAtLeast; in
 
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+  pname = "lwt";
   version = "4.1.0";
-  name = "ocaml${ocaml.version}-lwt-${version}";
 
   src = fetchzip {
-    url = "https://github.com/ocsigen/lwt/archive/${version}.tar.gz";
+    url = "https://github.com/ocsigen/${pname}/archive/${version}.tar.gz";
     sha256 = "16wnc61kfj54z4q8sn9f5iik37pswz328hcz3z6rkza3kh3s6wmm";
   };
 
   nativeBuildInputs = [ pkgconfig ];
-  buildInputs = [ ocaml findlib dune cppo
-    ocaml-migrate-parsetree ppx_tools_versioned
-  ] ++ optional (!versionAtLeast ocaml.version "4.07") ncurses;
+  buildInputs = [ cppo ocaml-migrate-parsetree ppx_tools_versioned ]
+   ++ optional (!versionAtLeast ocaml.version "4.07") ncurses;
   propagatedBuildInputs = [ libev result ];
 
   configurePhase = "ocaml src/util/configure.ml -use-libev true";
-  buildPhase = "jbuilder build -p lwt";
-  inherit (dune) installPhase;
 
   meta = {
     homepage = "https://ocsigen.org/lwt/";
     description = "A cooperative threads library for OCaml";
     maintainers = [ stdenv.lib.maintainers.vbgl ];
     license = stdenv.lib.licenses.lgpl21;
-    inherit (ocaml.meta) platforms;
   };
 }
-
diff --git a/pkgs/development/ocaml-modules/lwt/ppx.nix b/pkgs/development/ocaml-modules/lwt/ppx.nix
index 89e326557b5d..7ba22a025f49 100644
--- a/pkgs/development/ocaml-modules/lwt/ppx.nix
+++ b/pkgs/development/ocaml-modules/lwt/ppx.nix
@@ -1,19 +1,15 @@
-{ stdenv, dune, ocaml, findlib, lwt, ppx_tools_versioned }:
+{ stdenv, buildDunePackage, lwt, ppx_tools_versioned }:
 
-stdenv.mkDerivation {
-  name = "ocaml${ocaml.version}-lwt_ppx-${lwt.version}";
+buildDunePackage {
+  pname = "lwt_ppx";
 
-  inherit (lwt) src;
-
-  buildInputs = [ dune ocaml findlib ppx_tools_versioned ];
+  inherit (lwt) src version;
 
+  buildInputs = [ ppx_tools_versioned ];
   propagatedBuildInputs = [ lwt ];
 
-  buildPhase = "dune build -p lwt_ppx";
-  installPhase = "${dune.installPhase} lwt_ppx.install";
-
   meta = {
     description = "Ppx syntax extension for Lwt";
-    inherit (lwt.meta) license platforms homepage maintainers;
+    inherit (lwt.meta) license homepage maintainers;
   };
 }
diff --git a/pkgs/development/ocaml-modules/lwt_log/default.nix b/pkgs/development/ocaml-modules/lwt_log/default.nix
index a3d34b190b86..7eea297e3eeb 100644
--- a/pkgs/development/ocaml-modules/lwt_log/default.nix
+++ b/pkgs/development/ocaml-modules/lwt_log/default.nix
@@ -1,33 +1,24 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune, lwt }:
+{ stdenv, fetchFromGitHub, buildDunePackage, lwt }:
 
-if !stdenv.lib.versionAtLeast ocaml.version "4.02"
-then throw "lwt_log is not available for OCaml ${ocaml.version}"
-else
-
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+  pname = "lwt_log";
   version = "1.1.0";
-  name = "ocaml${ocaml.version}-lwt_log-${version}";
+
+  minimumOCamlVersion = "4.02";
 
   src = fetchFromGitHub {
     owner = "aantron";
-    repo = "lwt_log";
+    repo = pname;
     rev = version;
     sha256 = "1c58gkqfvyf2j11jwj2nh4iq999wj9xpnmr80hz9d0nk9fv333pi";
   };
 
-  buildInputs = [ ocaml findlib dune ];
-
   propagatedBuildInputs = [ lwt ];
 
-  buildPhase = "dune build -p lwt_log";
-
-  inherit (dune) installPhase;
-
   meta = {
     description = "Lwt logging library (deprecated)";
     homepage = "https://github.com/aantron/lwt_log";
     license = stdenv.lib.licenses.lgpl21;
-    inherit (ocaml.meta) platforms;
     maintainers = [ stdenv.lib.maintainers.vbgl ];
   };
 }
diff --git a/pkgs/development/ocaml-modules/lwt_react/default.nix b/pkgs/development/ocaml-modules/lwt_react/default.nix
index 4d505b23ae0e..41276668ecc9 100644
--- a/pkgs/development/ocaml-modules/lwt_react/default.nix
+++ b/pkgs/development/ocaml-modules/lwt_react/default.nix
@@ -16,6 +16,7 @@ stdenv.mkDerivation rec {
 
 	meta = {
 		description = "Helpers for using React with Lwt";
-		inherit (lwt.meta) homepage license maintainers platforms;
+		inherit (lwt.meta) homepage license maintainers;
+    inherit (ocaml.meta) platforms;
 	};
 }
diff --git a/pkgs/development/ocaml-modules/lwt_ssl/default.nix b/pkgs/development/ocaml-modules/lwt_ssl/default.nix
index a06e72529864..49c2b7de3980 100644
--- a/pkgs/development/ocaml-modules/lwt_ssl/default.nix
+++ b/pkgs/development/ocaml-modules/lwt_ssl/default.nix
@@ -1,28 +1,22 @@
-{ stdenv, fetchzip, ocaml, findlib, dune, ssl, lwt }:
+{ stdenv, fetchzip, buildDunePackage, ssl, lwt }:
 
-if !stdenv.lib.versionAtLeast ocaml.version "4.02"
-then throw "lwt_ssl is not available for OCaml ${ocaml.version}"
-else
-
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+  pname = "lwt_ssl";
   version = "1.1.2";
-  name = "ocaml${ocaml.version}-lwt_ssl-${version}";
+
+  minimumOCamlVersion = "4.02";
 
   src = fetchzip {
-    url = "https://github.com/aantron/lwt_ssl/archive/${version}.tar.gz";
+    url = "https://github.com/aantron/${pname}/archive/${version}.tar.gz";
     sha256 = "1q0an3djqjxv83v3iswi7m81braqx93kcrcwrxwmf6jzhdm4pn15";
   };
 
-  buildInputs = [ ocaml findlib dune ];
   propagatedBuildInputs = [ ssl lwt ];
 
-  inherit (dune) installPhase;
-
   meta = {
     homepage = "https://github.com/aantron/lwt_ssl";
     description = "OpenSSL binding with concurrent I/O";
     license = stdenv.lib.licenses.lgpl21;
     maintainers = [ stdenv.lib.maintainers.vbgl ];
-    inherit (ocaml.meta) platforms;
   };
 }
diff --git a/pkgs/development/ocaml-modules/mstruct/default.nix b/pkgs/development/ocaml-modules/mstruct/default.nix
index 9184975f0698..ae26f879ef8c 100644
--- a/pkgs/development/ocaml-modules/mstruct/default.nix
+++ b/pkgs/development/ocaml-modules/mstruct/default.nix
@@ -1,33 +1,24 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune
-, cstruct
-}:
+{ stdenv, fetchFromGitHub, buildDunePackage, cstruct }:
 
-if !stdenv.lib.versionAtLeast ocaml.version "4.02"
-then throw "mstruct is not available for OCaml ${ocaml.version}"
-else
-
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+	pname = "mstruct";
 	version = "1.4.0";
-	name = "ocaml${ocaml.version}-mstruct-${version}";
+
+  minimumOCamlVersion = "4.02";
 
 	src = fetchFromGitHub {
 		owner = "mirage";
-		repo = "ocaml-mstruct";
+		repo = "ocaml-${pname}";
 		rev = "v${version}";
 		sha256 = "1p4ygwzs3n1fj4apfib0z0sabpph21bkq1dgjk4bsa59pq4prncm";
 	};
 
-	buildInputs = [ ocaml findlib dune ];
-
 	propagatedBuildInputs = [ cstruct ];
 
-	inherit (dune) installPhase;
-
 	meta = {
 		description = "A thin mutable layer on top of cstruct";
 		license = stdenv.lib.licenses.isc;
 		maintainers = [ stdenv.lib.maintainers.vbgl ];
 		inherit (src.meta) homepage;
-		inherit (ocaml.meta) platforms;
 	};
 }
diff --git a/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix b/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix
index e8074a51e52f..a9496576875c 100644
--- a/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix
+++ b/pkgs/development/ocaml-modules/ocaml-migrate-parsetree/default.nix
@@ -1,30 +1,22 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, ocamlbuild, dune, result }:
+{ stdenv, fetchFromGitHub, buildDunePackage, result }:
 
-if !stdenv.lib.versionAtLeast ocaml.version "4.02"
-then throw "ocaml-migrate-parsetree is not available for OCaml ${ocaml.version}"
-else
-
-stdenv.mkDerivation rec {
-   name = "ocaml${ocaml.version}-ocaml-migrate-parsetree-${version}";
+buildDunePackage rec {
+   pname = "ocaml-migrate-parsetree";
    version = "1.1.0";
 
    src = fetchFromGitHub {
      owner = "ocaml-ppx";
-     repo = "ocaml-migrate-parsetree";
+     repo = pname;
      rev = "v${version}";
      sha256 = "1d2n349d1cqm3dr09mwy5m9rfd4bkkqvri5i94wknpsrr35vnrr1";
    };
 
-   buildInputs = [ ocaml findlib ocamlbuild dune ];
    propagatedBuildInputs = [ result ];
 
-   inherit (dune) installPhase;
-
    meta = {
      description = "Convert OCaml parsetrees between different major versions";
      license = stdenv.lib.licenses.lgpl21;
      maintainers = [ stdenv.lib.maintainers.vbgl ];
      inherit (src.meta) homepage;
-     inherit (ocaml.meta) platforms;
    };
 }
diff --git a/pkgs/development/ocaml-modules/odoc/default.nix b/pkgs/development/ocaml-modules/odoc/default.nix
index ef91b110c7ce..0b342a654e6e 100644
--- a/pkgs/development/ocaml-modules/odoc/default.nix
+++ b/pkgs/development/ocaml-modules/odoc/default.nix
@@ -1,26 +1,22 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune, cppo
-, bos, cmdliner, tyxml
-}:
+{ stdenv, fetchFromGitHub, buildDunePackage, cppo, bos, cmdliner, tyxml }:
 
-stdenv.mkDerivation rec {
-  name = "ocaml${ocaml.version}-odoc-${version}";
+buildDunePackage rec {
+  pname = "odoc";
   version = "1.3.0";
+
   src = fetchFromGitHub {
     owner = "ocaml";
-    repo = "odoc";
+    repo = pname;
     rev = version;
     sha256 = "0hjan5aj5zk8j8qyagv9r4hqm469mh207cv2m6kxwgnw0c3cz7sy";
   };
 
-  buildInputs = [ ocaml findlib dune cppo bos cmdliner tyxml ];
-
-  inherit (dune) installPhase;
+  buildInputs = [ cppo bos cmdliner tyxml ];
 
   meta = {
     description = "A documentation generator for OCaml";
     license = stdenv.lib.licenses.isc;
     maintainers = [ stdenv.lib.maintainers.vbgl ];
-    inherit (ocaml.meta) platforms;
     inherit (src.meta) homepage;
   };
 }
diff --git a/pkgs/development/ocaml-modules/ppx_blob/default.nix b/pkgs/development/ocaml-modules/ppx_blob/default.nix
index 72e0e5e121ad..b36eaed500f8 100644
--- a/pkgs/development/ocaml-modules/ppx_blob/default.nix
+++ b/pkgs/development/ocaml-modules/ppx_blob/default.nix
@@ -1,26 +1,18 @@
-{ stdenv, fetchurl, ocaml, findlib, dune, alcotest
-, ocaml-migrate-parsetree
-}:
+{ stdenv, fetchurl, buildDunePackage, alcotest, ocaml-migrate-parsetree }:
 
-stdenv.mkDerivation rec {
-  name = "ocaml${ocaml.version}-ppx_blob-${version}";
+buildDunePackage rec {
+  pname = "ppx_blob";
   version = "0.4.0";
 
   src = fetchurl {
-    url = "https://github.com/johnwhitington/ppx_blob/releases/download/${version}/ppx_blob-${version}.tbz";
+    url = "https://github.com/johnwhitington/${pname}/releases/download/${version}/ppx_blob-${version}.tbz";
     sha256 = "1xmslk1mwdzhy1bydgsjlcb7h544c39hvxa8lywp8w72gaggjl16";
   };
 
   unpackCmd = "tar xjf $curSrc";
 
-  buildInputs = [ ocaml findlib dune alcotest ocaml-migrate-parsetree ];
-
-  buildPhase = "dune build -p ppx_blob";
-
+  buildInputs = [ alcotest ocaml-migrate-parsetree ];
   doCheck = true;
-  checkPhase = "dune runtest -p ppx_blob";
-
-  inherit (dune) installPhase;
 
   meta = with stdenv.lib; {
     homepage = https://github.com/johnwhitington/ppx_blob;
diff --git a/pkgs/development/ocaml-modules/ppx_derivers/default.nix b/pkgs/development/ocaml-modules/ppx_derivers/default.nix
index edd086067610..0482e04b1c4a 100644
--- a/pkgs/development/ocaml-modules/ppx_derivers/default.nix
+++ b/pkgs/development/ocaml-modules/ppx_derivers/default.nix
@@ -1,29 +1,22 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune }:
+{ stdenv, fetchFromGitHub, buildDunePackage }:
 
-if !stdenv.lib.versionAtLeast ocaml.version "4.02"
-then throw "ppx_derivers is not available for OCaml ${ocaml.version}"
-else
-
-stdenv.mkDerivation rec {
-	name = "ocaml${ocaml.version}-ppx_derivers-${version}";
+buildDunePackage rec {
+	pname = "ppx_derivers";
 	version = "1.2";
 
+  minimumOCamlVersion = "4.02";
+
 	src = fetchFromGitHub {
 		owner = "diml";
-		repo = "ppx_derivers";
+		repo = pname;
 		rev = version;
 		sha256 = "0bnhihl1w31as5w2czly1v3d6pbir9inmgsjg2cj6aaj9v1dzd85";
 	};
 
-	buildInputs = [ ocaml findlib dune ];
-
-	inherit (dune) installPhase;
-
 	meta = {
 		description = "Shared [@@deriving] plugin registry";
 		license = stdenv.lib.licenses.bsd3;
 		maintainers = [ stdenv.lib.maintainers.vbgl ];
 		inherit (src.meta) homepage;
-		inherit (ocaml.meta) platforms;
 	};
 }
diff --git a/pkgs/development/ocaml-modules/ppx_gen_rec/default.nix b/pkgs/development/ocaml-modules/ppx_gen_rec/default.nix
index 4c458b983d33..270afae754be 100644
--- a/pkgs/development/ocaml-modules/ppx_gen_rec/default.nix
+++ b/pkgs/development/ocaml-modules/ppx_gen_rec/default.nix
@@ -1,12 +1,11 @@
-{ stdenv, fetchurl, ocaml, findlib, dune, ocaml-migrate-parsetree }:
+{ stdenv, fetchurl, buildDunePackage, ocaml-migrate-parsetree }:
 
-assert stdenv.lib.versionAtLeast (stdenv.lib.getVersion ocaml) "4.01";
-
-stdenv.mkDerivation rec {
+buildDunePackage rec {
   pname = "ppx_gen_rec";
-  name = "ocaml${ocaml.version}-${pname}-${version}";
   version = "1.0.0";
 
+  minimumOCamlVersion = "4.01";
+
   src = fetchurl {
     url = "https://github.com/flowtype/ocaml-${pname}/releases/download/v${version}/${pname}-${version}.tbz";
     sha256 = "0qy0wa3rd5yh1612jijadi1yddfslpsmmmf69phi2dhr3vmkhza7";
@@ -14,17 +13,12 @@ stdenv.mkDerivation rec {
 
   unpackCmd = "tar xjf $src";
 
-  buildInputs = [ ocaml findlib dune ocaml-migrate-parsetree ];
-
-  buildPhase = "dune build -p ppx_gen_rec";
-
-  inherit (dune) installPhase;
+  buildInputs = [ ocaml-migrate-parsetree ];
 
   meta = with stdenv.lib; {
     homepage = https://github.com/flowtype/ocaml-ppx_gen_rec;
     description = "ocaml preprocessor that generates a recursive module";
     license = licenses.mit;
-    platforms = ocaml.meta.platforms or [];
     maintainers = [ maintainers.frontsideair ];
   };
 }
diff --git a/pkgs/development/ocaml-modules/ppxlib/default.nix b/pkgs/development/ocaml-modules/ppxlib/default.nix
index 589eb9133370..a1e43d6d13db 100644
--- a/pkgs/development/ocaml-modules/ppxlib/default.nix
+++ b/pkgs/development/ocaml-modules/ppxlib/default.nix
@@ -1,34 +1,26 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune
+{ stdenv, fetchFromGitHub, buildDunePackage
 , ocaml-compiler-libs, ocaml-migrate-parsetree, ppx_derivers, stdio
 }:
 
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+  pname = "ppxlib";
   version = "0.3.1";
-  name = "ocaml${ocaml.version}-ppxlib-${version}";
 
   src = fetchFromGitHub {
     owner = "ocaml-ppx";
-    repo = "ppxlib";
+    repo = pname;
     rev = version;
     sha256 = "0qpjl84x8abq9zivifb0k8ld7fa1lrhkbajmmccvfv06ja3as1v4";
   };
 
-  buildInputs = [ ocaml findlib dune ];
-
   propagatedBuildInputs = [
     ocaml-compiler-libs ocaml-migrate-parsetree ppx_derivers stdio
   ];
 
-  buildPhase = "dune build";
-
-  inherit (dune) installPhase;
-
   meta = {
     description = "Comprehensive ppx tool set";
     license = stdenv.lib.licenses.mit;
     maintainers = [ stdenv.lib.maintainers.vbgl ];
     inherit (src.meta) homepage;
-    inherit (ocaml.meta) platforms;
   };
-
 }
diff --git a/pkgs/development/ocaml-modules/re/default.nix b/pkgs/development/ocaml-modules/re/default.nix
index c4215b98a50f..b2413b7dddd6 100644
--- a/pkgs/development/ocaml-modules/re/default.nix
+++ b/pkgs/development/ocaml-modules/re/default.nix
@@ -1,29 +1,22 @@
-{ stdenv, fetchzip, ocaml, findlib, dune, ounit, seq }:
+{ stdenv, fetchzip, buildDunePackage, ounit, seq }:
 
-if !stdenv.lib.versionAtLeast ocaml.version "4.02"
-then throw "re is not available for OCaml ${ocaml.version}"
-else
-
-stdenv.mkDerivation rec {
-  name = "ocaml${ocaml.version}-re-${version}";
+buildDunePackage rec {
+  pname = "re";
   version = "1.8.0";
 
+  minimumOCamlVersion = "4.02";
+
   src = fetchzip {
     url = "https://github.com/ocaml/ocaml-re/archive/${version}.tar.gz";
     sha256 = "0ch6hvmm4ym3w2vghjxf3ka5j1023a37980fqi4zcb7sx756z20i";
   };
 
-  buildInputs = [ ocaml findlib dune ounit ];
+  buildInputs = [ ounit ];
   propagatedBuildInputs = [ seq ];
-
   doCheck = true;
-  checkPhase = "jbuilder runtest";
-
-  inherit (dune) installPhase;
 
   meta = {
     homepage = https://github.com/ocaml/ocaml-re;
-    platforms = ocaml.meta.platforms or [];
     description = "Pure OCaml regular expressions, with support for Perl and POSIX-style strings";
     license = stdenv.lib.licenses.lgpl2;
     maintainers = with stdenv.lib.maintainers; [ vbgl ];
diff --git a/pkgs/development/ocaml-modules/sequence/default.nix b/pkgs/development/ocaml-modules/sequence/default.nix
index 59641458338f..e5ead36d1c19 100644
--- a/pkgs/development/ocaml-modules/sequence/default.nix
+++ b/pkgs/development/ocaml-modules/sequence/default.nix
@@ -1,28 +1,22 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune, qtest, result }:
+{ stdenv, fetchFromGitHub, buildDunePackage, qtest, result }:
 
-if !stdenv.lib.versionAtLeast ocaml.version "4.02"
-then throw "sequence is not available for OCaml ${ocaml.version}"
-else
+buildDunePackage rec {
+  pname = "sequence";
+  version = "1.1";
 
-let version = "1.1"; in
-
-stdenv.mkDerivation {
-  name = "ocaml${ocaml.version}-sequence-${version}";
+  minimumOCamlVersion = "4.02";
 
   src = fetchFromGitHub {
     owner = "c-cube";
-    repo = "sequence";
+    repo = pname;
     rev = version;
     sha256 = "08j37nldw47syq3yw4mzhhvya43knl0d7biddp0q9hwbaxhzgi44";
   };
 
-  buildInputs = [ ocaml findlib dune qtest ];
+  buildInputs = [ qtest ];
   propagatedBuildInputs = [ result ];
 
   doCheck = true;
-  checkPhase = "dune runtest";
-
-  inherit (dune) installPhase;
 
   meta = {
     homepage = https://github.com/c-cube/sequence;
@@ -34,6 +28,5 @@ stdenv.mkDerivation {
       sequence is iterated/folded on.
     '';
     license = stdenv.lib.licenses.bsd2;
-    platforms = ocaml.meta.platforms or [];
   };
 }
diff --git a/pkgs/development/ocaml-modules/sqlexpr/default.nix b/pkgs/development/ocaml-modules/sqlexpr/default.nix
index cad4dcafb642..7d988e27ff0e 100644
--- a/pkgs/development/ocaml-modules/sqlexpr/default.nix
+++ b/pkgs/development/ocaml-modules/sqlexpr/default.nix
@@ -1,32 +1,24 @@
-{ stdenv, fetchurl, ocaml, findlib, dune, ocaml_lwt
+{ stdenv, fetchurl, buildDunePackage, ocaml_lwt
 , lwt_ppx, ocaml-migrate-parsetree, ppx_tools_versioned, csv, ocaml_sqlite3
 }:
 
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+  pname = "sqlexpr";
   version = "0.9.0";
-  name = "ocaml${ocaml.version}-sqlexpr-${version}";
 
   src = fetchurl {
   url = "https://github.com/mfp/ocaml-sqlexpr/releases/download/${version}/ocaml-sqlexpr-${version}.tar.gz";
   sha256 = "0z0bkzi1mh0m39alzr2ds7hjpfxffx6azpfsj2wpaxrg64ks8ypd";
   };
 
-  buildInputs = [ ocaml findlib dune lwt_ppx ocaml-migrate-parsetree ppx_tools_versioned ];
-
+  buildInputs = [ lwt_ppx ocaml-migrate-parsetree ppx_tools_versioned ];
   propagatedBuildInputs = [ ocaml_lwt csv ocaml_sqlite3 ];
-
-  buildPhase = "dune build -p sqlexpr";
-
   doCheck = true;
-  checkPhase = "dune runtest -p sqlexpr";
-
-  inherit (dune) installPhase;
 
   meta = {
     description = "Type-safe, convenient SQLite database access";
     homepage = "https://github.com/mfp/ocaml-sqlexpr";
     license = stdenv.lib.licenses.lgpl21;
     maintainers = [ stdenv.lib.maintainers.vbgl ];
-    inherit (ocaml.meta) platforms;
   };
 }
diff --git a/pkgs/development/ocaml-modules/sqlexpr/ppx.nix b/pkgs/development/ocaml-modules/sqlexpr/ppx.nix
index b908e173257c..5ab6ff226f21 100644
--- a/pkgs/development/ocaml-modules/sqlexpr/ppx.nix
+++ b/pkgs/development/ocaml-modules/sqlexpr/ppx.nix
@@ -1,15 +1,11 @@
-{ stdenv, ocaml, findlib, dune, sqlexpr, ounit
+{ stdenv, buildDunePackage, sqlexpr, ounit
 , ppx_core, ppx_tools_versioned, re, lwt_ppx
 }:
 
-stdenv.mkDerivation rec {
-  name = "ocaml${ocaml.version}-ppx_sqlexpr-${version}";
-  inherit (sqlexpr) version src installPhase meta;
-
-  buildInputs = [ ocaml findlib dune sqlexpr ounit ppx_core ppx_tools_versioned re lwt_ppx ];
-
-  buildPhase = "dune build -p ppx_sqlexpr";
+buildDunePackage {
+  pname = "ppx_sqlexpr";
+  inherit (sqlexpr) version src meta;
 
+  buildInputs = [ sqlexpr ounit ppx_core ppx_tools_versioned re lwt_ppx ];
   doCheck = true;
-  checkPhase = "dune runtest -p ppx_sqlexpr";
 }
diff --git a/pkgs/development/ocaml-modules/uri/default.nix b/pkgs/development/ocaml-modules/uri/default.nix
index 4959ef7b34a7..a8b664b0720c 100644
--- a/pkgs/development/ocaml-modules/uri/default.nix
+++ b/pkgs/development/ocaml-modules/uri/default.nix
@@ -1,33 +1,26 @@
-{ stdenv, fetchurl, ocaml, findlib, dune, ppx_sexp_conv, ounit
+{ stdenv, fetchurl, buildDunePackage, ppx_sexp_conv, ounit
 , re, sexplib, stringext
 }:
 
-stdenv.mkDerivation rec {
+buildDunePackage rec {
+  pname = "uri";
   version = "1.9.6";
-  name = "ocaml${ocaml.version}-uri-${version}";
 
   src = fetchurl {
-    url = "https://github.com/mirage/ocaml-uri/releases/download/v${version}/uri-${version}.tbz";
+    url = "https://github.com/mirage/ocaml-${pname}/releases/download/v${version}/${pname}-${version}.tbz";
     sha256 = "1m845rwd70wi4iijkrigyz939m1x84ba70hvv0d9sgk6971w4kz0";
   };
 
   unpackCmd = "tar -xjf $curSrc";
 
-  buildInputs = [ ocaml findlib dune ounit ];
+  buildInputs = [ ounit ];
   propagatedBuildInputs = [ ppx_sexp_conv re sexplib stringext ];
-
-  buildPhase = "jbuilder build";
-
   doCheck = true;
-  checkPhase = "jbuilder runtest";
-
-  inherit (dune) installPhase;
 
   meta = {
     homepage = "https://github.com/mirage/ocaml-uri";
     description = "RFC3986 URI parsing library for OCaml";
     license = stdenv.lib.licenses.isc;
     maintainers = [ stdenv.lib.maintainers.vbgl ];
-    inherit (ocaml.meta) platforms;
   };
 }
diff --git a/pkgs/development/ocaml-modules/wtf8/default.nix b/pkgs/development/ocaml-modules/wtf8/default.nix
index 58ce7778c417..1c105fbc0259 100644
--- a/pkgs/development/ocaml-modules/wtf8/default.nix
+++ b/pkgs/development/ocaml-modules/wtf8/default.nix
@@ -1,12 +1,11 @@
-{ stdenv, fetchurl, ocaml, findlib, dune }:
+{ stdenv, fetchurl, buildDunePackage }:
 
-assert stdenv.lib.versionAtLeast (stdenv.lib.getVersion ocaml) "4.01";
-
-stdenv.mkDerivation rec {
+buildDunePackage rec {
   pname = "wtf8";
-  name = "ocaml-${pname}-${version}";
   version = "1.0.1";
 
+  minimumOCamlVersion = "4.01";
+
   src = fetchurl {
     url = "https://github.com/flowtype/ocaml-${pname}/releases/download/v${version}/${pname}-${version}.tbz";
     sha256 = "1msg3vycd3k8qqj61sc23qks541cxpb97vrnrvrhjnqxsqnh6ygq";
@@ -14,17 +13,10 @@ stdenv.mkDerivation rec {
 
   unpackCmd = "tar xjf $src";
 
-  buildInputs = [ ocaml findlib dune ];
-
-  buildPhase = "dune build -p wtf8";
-
-  inherit (dune) installPhase;
-
   meta = with stdenv.lib; {
     homepage = https://github.com/flowtype/ocaml-wtf8;
     description = "WTF-8 is a superset of UTF-8 that allows unpaired surrogates.";
     license = licenses.mit;
-    platforms = ocaml.meta.platforms or [];
     maintainers = [ maintainers.eqyiel ];
   };
 }
diff --git a/pkgs/development/ocaml-modules/zmq/default.nix b/pkgs/development/ocaml-modules/zmq/default.nix
index a792877e0590..fe6a17e876b6 100644
--- a/pkgs/development/ocaml-modules/zmq/default.nix
+++ b/pkgs/development/ocaml-modules/zmq/default.nix
@@ -1,8 +1,9 @@
-{ stdenv, fetchFromGitHub, ocaml, findlib, dune, czmq, stdint }:
+{ stdenv, fetchFromGitHub, buildDunePackage, czmq, stdint }:
 
-stdenv.mkDerivation rec {
-  name = "ocaml${ocaml.version}-zmq-${version}";
+buildDunePackage rec {
+  pname = "zmq";
   version = "20180726";
+
   src = fetchFromGitHub {
     owner = "issuu";
     repo = "ocaml-zmq";
@@ -14,19 +15,13 @@ stdenv.mkDerivation rec {
     ./ocaml-zmq-issue43.patch
   ];
 
-  buildInputs = [ ocaml findlib dune czmq ];
-
+  buildInputs = [ czmq ];
   propagatedBuildInputs = [ stdint ];
 
-  buildPhase = "dune build -p zmq";
-
-  inherit (dune) installPhase;
-
   meta = with stdenv.lib; {
     description = "ZeroMQ bindings for OCaml";
     license     = licenses.mit;
     maintainers = with maintainers; [ akavel ];
     inherit (src.meta) homepage;
-    inherit (ocaml.meta) platforms;
   };
 }
diff --git a/pkgs/development/ocaml-modules/zmq/lwt.nix b/pkgs/development/ocaml-modules/zmq/lwt.nix
index 80c934b44d64..65595992e2c1 100644
--- a/pkgs/development/ocaml-modules/zmq/lwt.nix
+++ b/pkgs/development/ocaml-modules/zmq/lwt.nix
@@ -1,12 +1,8 @@
-{ stdenv, ocaml, findlib, dune, zmq, ocaml_lwt }:
+{ stdenv, buildDunePackage, zmq, ocaml_lwt }:
 
-stdenv.mkDerivation rec {
-  name = "ocaml${ocaml.version}-zmq-lwt-${version}";
-  inherit (zmq) version src installPhase meta;
-
-  buildInputs = [ ocaml findlib dune ];
+buildDunePackage rec {
+  pname = "zmq-lwt";
+  inherit (zmq) version src meta;
 
   propagatedBuildInputs = [ zmq ocaml_lwt ];
-
-  buildPhase = "dune build -p zmq-lwt";
 }
diff --git a/pkgs/development/tools/ocaml/merlin/default.nix b/pkgs/development/tools/ocaml/merlin/default.nix
index c15970d3f3e6..e059a5d6a76c 100644
--- a/pkgs/development/tools/ocaml/merlin/default.nix
+++ b/pkgs/development/tools/ocaml/merlin/default.nix
@@ -1,23 +1,17 @@
-{ stdenv, fetchzip, ocaml, findlib, dune, yojson }:
+{ stdenv, fetchzip, buildDunePackage, yojson }:
 
-assert stdenv.lib.versionAtLeast ocaml.version "4.02";
-
-let
+buildDunePackage rec {
+  pname = "merlin";
   version = "3.2.2";
-in
 
-stdenv.mkDerivation {
-
-  name = "merlin-${version}";
+  minimumOCamlVersion = "4.02";
 
   src = fetchzip {
     url = "https://github.com/ocaml/merlin/archive/v${version}.tar.gz";
     sha256 = "15ssgmwdxylbwhld9p1cq8x6kadxyhll5bfyf11dddj6cldna3hb";
   };
 
-  buildInputs = [ ocaml findlib dune yojson ];
-
-  inherit (dune) installPhase;
+  buildInputs = [ yojson ];
 
   meta = with stdenv.lib; {
     description = "An editor-independent tool to ease the development of programs in OCaml";
diff --git a/pkgs/development/tools/ocaml/ocaml-top/default.nix b/pkgs/development/tools/ocaml/ocaml-top/default.nix
index ddea2aa9784b..7336439240d5 100644
--- a/pkgs/development/tools/ocaml/ocaml-top/default.nix
+++ b/pkgs/development/tools/ocaml/ocaml-top/default.nix
@@ -1,33 +1,25 @@
-{ stdenv, fetchzip, ncurses
-, ocamlPackages
-, dune
-}:
+{ stdenv, fetchzip, ncurses, ocamlPackages }:
 
-stdenv.mkDerivation rec {
+with ocamlPackages; buildDunePackage rec {
+  pname = "ocaml-top";
   version = "1.1.5";
-  name = "ocaml-top-${version}";
+
   src = fetchzip {
     url = "https://github.com/OCamlPro/ocaml-top/archive/${version}.tar.gz";
     sha256 = "1d4i6aanrafgrgk4mh154k6lkwk0b6mh66rykz33awlf5pfqd8yv";
   };
 
-  buildInputs = [ ncurses dune ]
-  ++ (with ocamlPackages; [ ocaml ocp-build findlib lablgtk ocp-index ]);
+  buildInputs = [ ncurses ocp-build lablgtk ocp-index ];
 
   configurePhase = ''
     export TERM=xterm
     ocp-build -init
   '';
 
-  buildPhase = "jbuilder build";
-
-  inherit (dune) installPhase;
-
   meta = {
     homepage = https://www.typerex.org/ocaml-top.html;
     license = stdenv.lib.licenses.gpl3;
     description = "A simple cross-platform OCaml code editor built for top-level evaluation";
-    platforms = ocamlPackages.ocaml.meta.platforms or [];
     maintainers = with stdenv.lib.maintainers; [ vbgl ];
   };
 }
diff --git a/pkgs/development/tools/ocaml/ocamlformat/default.nix b/pkgs/development/tools/ocaml/ocamlformat/default.nix
index e0b744c83593..694f4b6e89a0 100644
--- a/pkgs/development/tools/ocaml/ocamlformat/default.nix
+++ b/pkgs/development/tools/ocaml/ocamlformat/default.nix
@@ -1,15 +1,10 @@
-{ stdenv, fetchFromGitHub, ocamlPackages, dune }:
+{ stdenv, fetchFromGitHub, ocamlPackages }:
 
-with ocamlPackages;
-
-if !stdenv.lib.versionAtLeast ocaml.version "4.05"
-then throw "ocamlformat is not available for OCaml ${ocaml.version}"
-else
-
-stdenv.mkDerivation rec {
-  version = "0.8";
+with ocamlPackages; buildDunePackage rec {
   pname = "ocamlformat";
-  name = "${pname}-${version}";
+  version = "0.8";
+
+  minimumOCamlVersion = "4.05";
 
   src = fetchFromGitHub {
     owner = "ocaml-ppx";
@@ -19,9 +14,6 @@ stdenv.mkDerivation rec {
   };
 
   buildInputs = [
-    ocaml
-    dune
-    findlib
     base
     cmdliner
     fpath
@@ -34,17 +26,10 @@ stdenv.mkDerivation rec {
     tools/gen_version.sh src/Version.ml version
   '';
 
-  buildPhase = ''
-    dune build -p ocamlformat
-  '';
-
-  inherit (dune) installPhase;
-
   meta = {
-    homepage = "https://github.com/ocaml-ppx/ocamlformat";
+    inherit (src.meta) homepage;
     description = "Auto-formatter for OCaml code";
     maintainers = [ stdenv.lib.maintainers.Zimmi48 ];
     license = stdenv.lib.licenses.mit;
-    inherit (ocamlPackages.ocaml.meta) platforms;
   };
 }
diff --git a/pkgs/tools/misc/patdiff/default.nix b/pkgs/tools/misc/patdiff/default.nix
index ef848bb43f26..f67a8274443c 100644
--- a/pkgs/tools/misc/patdiff/default.nix
+++ b/pkgs/tools/misc/patdiff/default.nix
@@ -3,7 +3,7 @@
 with ocamlPackages;
 
 janePackage {
-  name = "patdiff";
+  pname = "patdiff";
   hash = "02cdn5j5brbp4n2rpxprzxfakjbl7n2llixg7m632bih3ppmfcq1";
   buildInputs = [ core_extended expect_test_helpers patience_diff ocaml_pcre ];
   meta = {
diff --git a/pkgs/top-level/ocaml-packages.nix b/pkgs/top-level/ocaml-packages.nix
index 2f6992e1c9a5..b95ca0e0ef45 100644
--- a/pkgs/top-level/ocaml-packages.nix
+++ b/pkgs/top-level/ocaml-packages.nix
@@ -17,6 +17,8 @@ let
 
     buildOcaml = callPackage ../build-support/ocaml { };
 
+    buildDunePackage = callPackage ../build-support/ocaml/dune.nix {};
+
     alcotest = callPackage ../development/ocaml-modules/alcotest {};
 
     angstrom = callPackage ../development/ocaml-modules/angstrom { };

From 406405d8bd419627114217a8c9f08593adff1372 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Th=C3=A9o=20Zimmermann?=
 <theo.zimmermann@univ-paris-diderot.fr>
Date: Mon, 5 Nov 2018 13:58:01 +0100
Subject: [PATCH 0603/1129] buildDunePackage: add support for pre and post
 phase hooks
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Co-authored-by: Jörg Thalheim <Mic92@users.noreply.github.com>
---
 pkgs/build-support/ocaml/dune.nix | 18 +++++++++++++++---
 1 file changed, 15 insertions(+), 3 deletions(-)

diff --git a/pkgs/build-support/ocaml/dune.nix b/pkgs/build-support/ocaml/dune.nix
index 8fda4d76c43c..3426f8e957d9 100644
--- a/pkgs/build-support/ocaml/dune.nix
+++ b/pkgs/build-support/ocaml/dune.nix
@@ -9,9 +9,21 @@ else
 
 stdenv.mkDerivation ({
 
-  buildPhase = "dune build -p ${pname}";
-  checkPhase = "dune runtest -p ${pname}";
-  inherit (dune) installPhase;
+  buildPhase = ''
+    runHook preBuild
+    dune build -p ${pname}
+    runHook postBuild
+  '';
+  checkPhase = ''
+    runHook preCheck
+    dune runtest -p ${pname}
+    runHook postCheck
+  '';
+  installPhase = ''
+    runHook preInstall
+    ${dune.installPhase}
+    runHook postInstall
+  '';
 
   meta.platform = ocaml.meta.platform;
 

From 742bce7793502e00736e49d6f8ed13952c7f3ba1 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Th=C3=A9o=20Zimmermann?=
 <theo.zimmermann@univ-paris-diderot.fr>
Date: Tue, 6 Nov 2018 17:18:09 +0100
Subject: [PATCH 0604/1129] buildDunePackage: inline dune.installPhase for
 easier overriding
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Co-authored-by: Jörg Thalheim <Mic92@users.noreply.github.com>
---
 pkgs/build-support/ocaml/dune.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/build-support/ocaml/dune.nix b/pkgs/build-support/ocaml/dune.nix
index 3426f8e957d9..7386b07f575c 100644
--- a/pkgs/build-support/ocaml/dune.nix
+++ b/pkgs/build-support/ocaml/dune.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, ocaml, findlib, dune }:
+{ stdenv, fetchurl, ocaml, findlib, dune, opaline }:
 
 { pname, version, buildInputs ? [], ... }@args:
 
@@ -21,7 +21,7 @@ stdenv.mkDerivation ({
   '';
   installPhase = ''
     runHook preInstall
-    ${dune.installPhase}
+    ${opaline}/bin/opaline -prefix $out -libdir $OCAMLFIND_DESTDIR
     runHook postInstall
   '';
 

From 5cd08118d953bba08936914318e29cabc4301862 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Th=C3=A9o=20Zimmermann?=
 <theo.zimmermann@univ-paris-diderot.fr>
Date: Tue, 6 Nov 2018 18:18:27 +0100
Subject: [PATCH 0605/1129] duneBuildPackage: document

---
 doc/languages-frameworks/index.xml |   1 +
 doc/languages-frameworks/ocaml.xml | 101 +++++++++++++++++++++++++++++
 2 files changed, 102 insertions(+)
 create mode 100644 doc/languages-frameworks/ocaml.xml

diff --git a/doc/languages-frameworks/index.xml b/doc/languages-frameworks/index.xml
index f22984cb56b0..ac0ad7125324 100644
--- a/doc/languages-frameworks/index.xml
+++ b/doc/languages-frameworks/index.xml
@@ -19,6 +19,7 @@
  <xi:include href="java.xml" />
  <xi:include href="lua.xml" />
  <xi:include href="node.section.xml" />
+ <xi:include href="ocaml.xml" />
  <xi:include href="perl.xml" />
  <xi:include href="python.section.xml" />
  <xi:include href="qt.xml" />
diff --git a/doc/languages-frameworks/ocaml.xml b/doc/languages-frameworks/ocaml.xml
new file mode 100644
index 000000000000..d1c29c72f726
--- /dev/null
+++ b/doc/languages-frameworks/ocaml.xml
@@ -0,0 +1,101 @@
+<section xmlns="http://docbook.org/ns/docbook"
+         xmlns:xlink="http://www.w3.org/1999/xlink"
+         xml:id="sec-language-ocaml">
+ <title>OCaml</title>
+
+ <para>
+   OCaml libraries should be installed in
+   <literal>$(out)/lib/ocaml/${ocaml.version}/site-lib/</literal>. Such
+   directories are automatically added to the <literal>$OCAMLPATH</literal>
+   environment variable when building another package that depends on them
+   or when opening a <literal>nix-shell</literal>.
+ </para>
+
+ <para>
+   Given that most of the OCaml ecosystem is now built with dune,
+   nixpkgs includes a convenience build support function called
+   <literal>buildDunePackage</literal> that will build an OCaml package
+   using dune, OCaml and findlib and any additional dependencies provided
+   as <literal>buildInputs</literal> or <literal>propagatedBuildInputs</literal>.
+ </para>
+
+ <para>
+   Here is a simple package example. It defines an (optional) attribute
+   <literal>minimumOCamlVersion</literal> that will be used to throw a
+   descriptive evaluation error if building with an older OCaml is attempted.
+   It uses the <literal>fetchFromGitHub</literal> fetcher to get its source.
+   It sets the <literal>doCheck</literal> (optional) attribute to
+   <literal>true</literal> which means that tests will be run with
+   <literal>dune runtest -p angstrom</literal> after the build
+   (<literal>dune build -p angstrom</literal>) is complete.
+   It uses <literal>alcotest</literal> as a build input (because it is needed
+   to run the tests) and <literal>bigstringaf</literal> and
+   <literal>result</literal> as propagated build inputs (thus they will also
+   be available to libraries depending on this library).
+   The library will be installed using the <literal>angstrom.install</literal>
+   file that dune generates.
+ </para>
+
+ <programlisting>
+{ stdenv, fetchFromGitHub, buildDunePackage, alcotest, result, bigstringaf }:
+
+buildDunePackage rec {
+  pname = "angstrom";
+  version = "0.10.0";
+
+  minimumOCamlVersion = "4.03";
+
+  src = fetchFromGitHub {
+    owner  = "inhabitedtype";
+    repo   = pname;
+    rev    = version;
+    sha256 = "0lh6024yf9ds0nh9i93r9m6p5psi8nvrqxl5x7jwl13zb0r9xfpw";
+  };
+
+  buildInputs = [ alcotest ];
+  propagatedBuildInputs = [ bigstringaf result ];
+  doCheck = true;
+
+  meta = {
+    homepage = https://github.com/inhabitedtype/angstrom;
+    description = "OCaml parser combinators built for speed and memory efficiency";
+    license = stdenv.lib.licenses.bsd3;
+    maintainers = with stdenv.lib.maintainers; [ sternenseemann ];
+  };
+}
+ </programlisting>
+
+ <para>
+   Here is a second example, this time using a source archive generated with
+   <literal>dune-release</literal>. The <literal>unpackCmd</literal>
+   redefinition is necessary to be able to unpack the kind of tarball that
+   <literal>dune-release</literal> generates. This library does not depend
+   on any other OCaml library and no tests are run after building it.
+ </para>
+
+ <programlisting>
+{ stdenv, fetchurl, buildDunePackage }:
+
+buildDunePackage rec {
+  pname = "wtf8";
+  version = "1.0.1";
+
+  minimumOCamlVersion = "4.01";
+
+  src = fetchurl {
+    url = "https://github.com/flowtype/ocaml-${pname}/releases/download/v${version}/${pname}-${version}.tbz";
+    sha256 = "1msg3vycd3k8qqj61sc23qks541cxpb97vrnrvrhjnqxsqnh6ygq";
+  };
+
+  unpackCmd = "tar xjf $src";
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/flowtype/ocaml-wtf8;
+    description = "WTF-8 is a superset of UTF-8 that allows unpaired surrogates.";
+    license = licenses.mit;
+    maintainers = [ maintainers.eqyiel ];
+  };
+}
+ </programlisting>
+
+</section>

From e11c3a08b0dc1671d1586e35360cd765be7c8551 Mon Sep 17 00:00:00 2001
From: Brayden Willenborg <braydenjw@users.noreply.github.com>
Date: Wed, 7 Nov 2018 03:21:55 -0600
Subject: [PATCH 0606/1129] gucci: init at 0.1.0 (#49813)

* gucci: init at 0.1.0

* gucci: init at 0.1.0
---
 maintainers/maintainer-list.nix   |  5 +++++
 pkgs/tools/text/gucci/default.nix | 30 ++++++++++++++++++++++++++++++
 pkgs/tools/text/gucci/deps.nix    | 30 ++++++++++++++++++++++++++++++
 pkgs/top-level/all-packages.nix   |  2 ++
 4 files changed, 67 insertions(+)
 create mode 100644 pkgs/tools/text/gucci/default.nix
 create mode 100644 pkgs/tools/text/gucci/deps.nix

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index 60354432ad9b..895a3590c1db 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -624,6 +624,11 @@
     github = "bramd";
     name = "Bram Duvigneau";
   };
+  braydenjw = {
+    email = "nixpkgs@willenborg.ca";
+    github = "braydenjw";
+    name = "Brayden Willenborg";
+  };
   brian-dawn = {
     email = "brian.t.dawn@gmail.com";
     github = "brian-dawn";
diff --git a/pkgs/tools/text/gucci/default.nix b/pkgs/tools/text/gucci/default.nix
new file mode 100644
index 000000000000..a04a2c65e7c3
--- /dev/null
+++ b/pkgs/tools/text/gucci/default.nix
@@ -0,0 +1,30 @@
+{ stdenv, buildGoPackage, fetchFromGitHub }:
+
+buildGoPackage rec {
+  name = "gucci-${version}";
+  version = "0.1.0";
+
+  goPackagePath = "github.com/noqcks/gucci";
+
+  src = fetchFromGitHub {
+    owner = "noqcks";
+    repo = "gucci";
+    rev = version;
+    sha256 = "0ksrmzb3iggc7gm51fl0jbb15d0gmpclslpkq2sl2xjzk29pkllq";
+  };
+
+  goDeps = ./deps.nix;
+
+  buildFlagsArray = ''
+    -ldflags=-X main.AppVersion=${version}
+  '';
+
+  meta = with stdenv.lib; {
+    description = "A simple CLI templating tool written in golang";
+    homepage = https://github.com/noqcks/gucci;
+    license = licenses.mit;
+    maintainers = [ maintainers.braydenjw ];
+    platforms = platforms.unix;
+  };
+}
+
diff --git a/pkgs/tools/text/gucci/deps.nix b/pkgs/tools/text/gucci/deps.nix
new file mode 100644
index 000000000000..8e2cc5af3bf1
--- /dev/null
+++ b/pkgs/tools/text/gucci/deps.nix
@@ -0,0 +1,30 @@
+[
+  {
+    goPackagePath = "gopkg.in/yaml.v2";
+    fetch = {
+      type = "git";
+      url = "https://gopkg.in/yaml.v2";
+      rev = "5420a8b6744d3b0345ab293f6fcba19c978f1183";
+      sha256 = "0dwjrs2lp2gdlscs7bsrmyc5yf6mm4fvgw71bzr9mv2qrd2q73s1";
+    };
+  }
+  {
+    goPackagePath = "github.com/imdario/mergo";
+    fetch = {
+      type = "git";
+      url = "https://github.com/imdario/mergo";
+      rev = "v0.3.6";
+      sha256 = "1lbzy8p8wv439sqgf0n21q52flf2wbamp6qa1jkyv6an0nc952q7";
+    };
+  }
+  {
+    goPackagePath = "github.com/urfave/cli";
+    fetch = {
+      type = "git";
+      url = "https://github.com/urfave/cli";
+      rev = "v1.20.0";
+      sha256 = "0y6f4sbzkiiwrxbl15biivj8c7qwxnvm3zl2dd3mw4wzg4x10ygj";
+    };
+  }
+]
+
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 9e9ee8797ff1..f50a72c4bf6b 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -725,6 +725,8 @@ with pkgs;
 
   gitter = callPackage  ../applications/networking/instant-messengers/gitter { };
 
+  gucci = callPackage ../tools/text/gucci { };
+
   grc = callPackage ../tools/misc/grc { };
 
   green-pdfviewer = callPackage ../applications/misc/green-pdfviewer {

From becf8879f4af23db52038e0796a21aab229a723d Mon Sep 17 00:00:00 2001
From: Florian Klink <flokli@flokli.de>
Date: Wed, 7 Nov 2018 10:56:22 +0100
Subject: [PATCH 0607/1129] lark-parser: 2017-12-18 -> 0.6.5

This bumps lark-parser to a released version that doesn't loop forever
and consumes all memory on certain grammars.

erezsh/lark redirects now to lark-parser/lark, so also update homepage.
---
 .../python-modules/lark-parser/default.nix           | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/pkgs/development/python-modules/lark-parser/default.nix b/pkgs/development/python-modules/lark-parser/default.nix
index a1b58a4eb05d..6858a6bcf949 100644
--- a/pkgs/development/python-modules/lark-parser/default.nix
+++ b/pkgs/development/python-modules/lark-parser/default.nix
@@ -5,14 +5,14 @@
 }:
 
 buildPythonPackage rec {
-  pname = "lark-parser"; # PyPI name
-  version = "2017-12-18";
+  pname = "lark-parser";
+  version = "0.6.5";
 
   src = fetchFromGitHub {
-    owner = "erezsh";
+    owner = "lark-parser";
     repo = "lark";
-    rev = "9d6cde9b1ba971f02ea8106fa3b71a934e83d6fa";
-    sha256 = "0nv6nxd8wx9dwhn37m94fkc10gknckrjs1hzajxygla3dpql455j";
+    rev = version;
+    sha256 = "0mf10xm9blqik8mwrpw0r07vqlk2y4r98yqvk1sq849zqlxmqpsr";
   };
 
   checkPhase = ''
@@ -23,7 +23,7 @@ buildPythonPackage rec {
 
   meta = {
     description = "A modern parsing library for Python, implementing Earley & LALR(1) and an easy interface";
-    homepage = https://github.com/erezsh/lark;
+    homepage = https://github.com/lark-parser/lark;
     license = lib.licenses.mit;
     maintainers = with lib.maintainers; [ fridh ];
   };

From 78090f4f094f6d551b07a767fff60ce10f221d72 Mon Sep 17 00:00:00 2001
From: Eelco Dolstra <edolstra@gmail.com>
Date: Wed, 7 Nov 2018 11:34:01 +0100
Subject: [PATCH 0608/1129] Remove preferLocalBuild documentation

It's incorrect (preferLocalBuild does not prevent uploading to binary
caches) and is not a stdenv attribute (it's already documented in the
Nix manual).
---
 doc/stdenv.xml | 17 +----------------
 1 file changed, 1 insertion(+), 16 deletions(-)

diff --git a/doc/stdenv.xml b/doc/stdenv.xml
index b2f30bf08db1..ef45ec301a6b 100644
--- a/doc/stdenv.xml
+++ b/doc/stdenv.xml
@@ -618,7 +618,7 @@ let f(h, h + 1, i) = i + h
   </variablelist>
 
   <variablelist>
-   <title>Variables affecting build properties</title>
+   <title>Attributes affecting build properties</title>
    <varlistentry>
     <term>
      <varname>enableParallelBuilding</varname>
@@ -637,21 +637,6 @@ let f(h, h + 1, i) = i + h
      </para>
     </listitem>
    </varlistentry>
-   <varlistentry>
-    <term>
-     <varname>preferLocalBuild</varname>
-    </term>
-    <listitem>
-     <para>
-      If set, specifies that the package is so lightweight in terms of build
-      operations (e.g. write a text file from a Nix string to the store) that
-      there's no need to look for it in binary caches -- it's faster to just
-      build it locally. It also tells Hydra and other facilities that this
-      package doesn't need to be exported in binary caches (noone would use it,
-      after all).
-     </para>
-    </listitem>
-   </varlistentry>
   </variablelist>
 
   <variablelist>

From 780a3ffa1226195e10675211683be4be38795919 Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Tue, 6 Nov 2018 22:04:21 -0500
Subject: [PATCH 0609/1129] pgmetrics: init at 1.5.0

---
 pkgs/tools/misc/pgmetrics/default.nix | 24 ++++++++
 pkgs/tools/misc/pgmetrics/deps.nix    | 84 +++++++++++++++++++++++++++
 pkgs/top-level/all-packages.nix       |  2 +
 3 files changed, 110 insertions(+)
 create mode 100644 pkgs/tools/misc/pgmetrics/default.nix
 create mode 100644 pkgs/tools/misc/pgmetrics/deps.nix

diff --git a/pkgs/tools/misc/pgmetrics/default.nix b/pkgs/tools/misc/pgmetrics/default.nix
new file mode 100644
index 000000000000..64d290ad89e3
--- /dev/null
+++ b/pkgs/tools/misc/pgmetrics/default.nix
@@ -0,0 +1,24 @@
+{ stdenv, buildGoPackage, fetchFromGitHub }:
+
+buildGoPackage rec {
+  name = "pgmetrics-${version}";
+  version = "1.5.0";
+
+  goPackagePath = "github.com/rapidloop/pgmetrics";
+
+  src = fetchFromGitHub {
+    owner  = "rapidloop";
+    repo   = "pgmetrics";
+    rev    = "refs/tags/v${version}";
+    sha256 = "1l3vd1lvp4a6irx0zpjb5bkskkb9krx9j7pwii8jy9dcjy4gj24f";
+  };
+
+  goDeps = ./deps.nix;
+
+  meta = with stdenv.lib; {
+    homepage = https://pgmetrics.io/;
+    description = "Collect and display information and stats from a running PostgreSQL server";
+    license = licenses.asl20;
+    maintainers = [ maintainers.marsam ];
+  };
+}
diff --git a/pkgs/tools/misc/pgmetrics/deps.nix b/pkgs/tools/misc/pgmetrics/deps.nix
new file mode 100644
index 000000000000..63b9492a9820
--- /dev/null
+++ b/pkgs/tools/misc/pgmetrics/deps.nix
@@ -0,0 +1,84 @@
+# file generated from Gopkg.lock using dep2nix (https://github.com/nixcloud/dep2nix)
+[
+  {
+    goPackagePath  = "github.com/dustin/go-humanize";
+    fetch = {
+      type = "git";
+      url = "https://github.com/dustin/go-humanize";
+      rev =  "bb3d318650d48840a39aa21a027c6630e198e626";
+      sha256 = "1lqd8ix3cb164j5iazjby2jpa6bdsflhy0h9mi4yldvvcvrc194c";
+    };
+  }
+  {
+    goPackagePath  = "github.com/howeyc/gopass";
+    fetch = {
+      type = "git";
+      url = "https://github.com/howeyc/gopass";
+      rev =  "bf9dde6d0d2c004a008c27aaee91170c786f6db8";
+      sha256 = "1jxzyfnqi0h1fzlsvlkn10bncic803bfhslyijcxk55mgh297g45";
+    };
+  }
+  {
+    goPackagePath  = "github.com/lib/pq";
+    fetch = {
+      type = "git";
+      url = "https://github.com/lib/pq";
+      rev =  "88edab0803230a3898347e77b474f8c1820a1f20";
+      sha256 = "02y7c8xy33x5q4167x2drzrys41nfi7wxxp9hy4vpazfws88al9p";
+    };
+  }
+  {
+    goPackagePath  = "github.com/pborman/getopt";
+    fetch = {
+      type = "git";
+      url = "https://github.com/pborman/getopt";
+      rev =  "7148bc3a4c3008adfcab60cbebfd0576018f330b";
+      sha256 = "0zhvvmv671r1fbdd5hbv3flx8k2rb60giqx115w0553c56qkqfpj";
+    };
+  }
+  {
+    goPackagePath  = "github.com/rapidloop/pq";
+    fetch = {
+      type = "git";
+      url = "https://github.com/rapidloop/pq";
+      rev =  "f379fd34d14f11337c3945aa665f7718c0213317";
+      sha256 = "0svhissh6v1qdj9zypvj6jpjrx9g56gq8sf1pila41mczglmni05";
+    };
+  }
+  {
+    goPackagePath  = "github.com/xdg-go/stringprep";
+    fetch = {
+      type = "git";
+      url = "https://github.com/xdg-go/stringprep";
+      rev =  "bd625b8dc1e3b0f57412280ccbcc317f0c69d8db";
+      sha256 = "03nard51zgzbaq64p6gsvrz8fps3yazl3ydd115y0bppkdx2i4ji";
+    };
+  }
+  {
+    goPackagePath  = "golang.org/x/crypto";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/crypto";
+      rev =  "432090b8f568c018896cd8a0fb0345872bbac6ce";
+      sha256 = "1i8616qqwih6g5nx8c1hfqhp0kb110ml3xkgsn6qvc36q04amjmq";
+    };
+  }
+  {
+    goPackagePath  = "golang.org/x/sys";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/sys";
+      rev =  "37707fdb30a5b38865cfb95e5aab41707daec7fd";
+      sha256 = "1abrr2507a737hdqv4q7pw7hv6ls9pdiq9crhdi52r3gcz6hvizg";
+    };
+  }
+  {
+    goPackagePath  = "golang.org/x/text";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/text";
+      rev =  "f21a4dfb5e38f5895301dc265a8def02365cc3d0";
+      sha256 = "0r6x6zjzhr8ksqlpiwm5gdd7s209kwk5p4lw54xjvz10cs3qlq19";
+    };
+  }
+]
\ No newline at end of file
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 9d391528bf05..65f7e1b6cc6f 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -4778,6 +4778,8 @@ with pkgs;
 
   pg_top = callPackage ../tools/misc/pg_top { };
 
+  pgmetrics = callPackage ../tools/misc/pgmetrics { };
+
   pdsh = callPackage ../tools/networking/pdsh {
     rsh = true;          # enable internal rsh implementation
     ssh = openssh;

From 7ea48e12b7b18b769571e1e7739811ad04dc0837 Mon Sep 17 00:00:00 2001
From: Andy Chun <andy@lolc.at>
Date: Wed, 7 Nov 2018 04:37:27 -0800
Subject: [PATCH 0610/1129] polar-bookshelf: init at 1.0.11 (#48610)

* polar-bookshelf: init at 1.0.11

* Grab gsettings_desktop_schemas from gnome3

* Explain why we're not building from source

* Use autoPatchelfHook

* Updated license & further cleanup
---
 .../misc/polar-bookshelf/default.nix          | 87 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 2 files changed, 89 insertions(+)
 create mode 100644 pkgs/applications/misc/polar-bookshelf/default.nix

diff --git a/pkgs/applications/misc/polar-bookshelf/default.nix b/pkgs/applications/misc/polar-bookshelf/default.nix
new file mode 100644
index 000000000000..1a46b275a5e3
--- /dev/null
+++ b/pkgs/applications/misc/polar-bookshelf/default.nix
@@ -0,0 +1,87 @@
+{ stdenv, lib, makeWrapper, fetchurl
+, dpkg, wrapGAppsHook, autoPatchelfHook
+, gtk3, cairo, gnome2, atk, gdk_pixbuf, glib
+, at-spi2-atk, dbus, libX11, libxcb, libXi
+, libXcursor, libXdamage, libXrandr, libXcomposite
+, libXext, libXfixes, libXrender, libXtst, libXScrnSaver
+, nss, nspr, alsaLib, cups, fontconfig, expat
+, libudev0-shim, glibc, curl, openssl, libnghttp2, gnome3 }:
+
+
+stdenv.mkDerivation rec {
+  name = "polar-bookshelf-${version}";
+  version = "1.0.11";
+
+  # fetching a .deb because there's no easy way to package this Electron app
+  src = fetchurl {
+    url = "https://github.com/burtonator/polar-bookshelf/releases/download/v${version}/polar-bookshelf-${version}-amd64.deb";
+    sha256 = "11rrwd5cr984nhgrib12hx6k74hzgmb3cfk6qnr1l604dk9pqfqx";
+  };
+
+  buildInputs = [
+    gnome3.gsettings_desktop_schemas
+    glib
+    gtk3
+    cairo
+    gnome2.pango
+    atk
+    gdk_pixbuf
+    at-spi2-atk
+    dbus
+    libX11
+    libxcb
+    libXi
+    libXcursor
+    libXdamage
+    libXrandr
+    libXcomposite
+    libXext
+    libXfixes
+    libXrender
+    libXtst
+    libXScrnSaver
+    nss
+    nspr
+    alsaLib
+    cups
+    fontconfig
+    expat
+  ];
+
+  nativeBuildInputs = [ 
+    wrapGAppsHook
+    autoPatchelfHook
+    makeWrapper 
+    dpkg
+  ];
+
+  runtimeLibs = lib.makeLibraryPath [ libudev0-shim glibc curl openssl libnghttp2 ];
+
+  unpackPhase = "dpkg-deb -x $src .";
+
+  installPhase = ''
+    mkdir -p $out/share/polar-bookshelf
+    mkdir -p $out/bin
+    mkdir -p $out/lib
+
+    mv opt/Polar\ Bookshelf/* $out/share/polar-bookshelf
+    mv $out/share/polar-bookshelf/*.so $out/lib
+
+    mv usr/share/* $out/share/
+
+    ln -s $out/share/polar-bookshelf/polar-bookshelf $out/bin/polar-bookshelf
+  '';
+
+  preFixup = ''
+    gappsWrapperArgs+=(--prefix LD_LIBRARY_PATH : "${runtimeLibs}" )
+  '';
+
+  meta = {
+    homepage = https://getpolarized.io/;
+    description = "Personal knowledge repository for PDF and web content supporting incremental reading and document annotation";
+    license = stdenv.lib.licenses.gpl3;
+    platforms = stdenv.lib.platforms.linux;
+    maintainers = [ stdenv.lib.maintainers.noneucat ];
+  };
+
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 9d391528bf05..ae5616205efd 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -18518,6 +18518,8 @@ with pkgs;
 
   pmenu = callPackage ../applications/misc/pmenu { };
 
+  polar-bookshelf = callPackage ../applications/misc/polar-bookshelf { };
+
   poezio = python3Packages.poezio;
 
   pommed = callPackage ../os-specific/linux/pommed {};

From e7b61b791b1a37bfe08ca33bf979c1b9e59a333a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Nikola=20Kne=C5=BEevi=C4=87?= <nikola@knezevic.co>
Date: Tue, 6 Nov 2018 18:22:07 +0100
Subject: [PATCH 0611/1129] grpcurl: init at 1.0.0

---
 maintainers/maintainer-list.nix               |  5 ++
 pkgs/tools/networking/grpcurl/default.nix     | 29 ++++++++
 pkgs/tools/networking/grpcurl/deps-darwin.nix | 57 ++++++++++++++++
 pkgs/tools/networking/grpcurl/deps-linux.nix  | 66 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 5 files changed, 159 insertions(+)
 create mode 100644 pkgs/tools/networking/grpcurl/default.nix
 create mode 100644 pkgs/tools/networking/grpcurl/deps-darwin.nix
 create mode 100644 pkgs/tools/networking/grpcurl/deps-linux.nix

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index 294843e03c65..1b04b43413c3 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -2234,6 +2234,11 @@
     github = "knedlsepp";
     name = "Josef Kemetmüller";
   };
+  knl = {
+    email = "nikola@knezevic.co";
+    github = "knl";
+    name = "Nikola Knežević";
+  };
   konimex = {
     email = "herdiansyah@netc.eu";
     github = "konimex";
diff --git a/pkgs/tools/networking/grpcurl/default.nix b/pkgs/tools/networking/grpcurl/default.nix
new file mode 100644
index 000000000000..10100b933d4d
--- /dev/null
+++ b/pkgs/tools/networking/grpcurl/default.nix
@@ -0,0 +1,29 @@
+# This file was generated by https://github.com/kamilchm/go2nix v1.2.1
+# and modified to add meta and switch to fetchFromGitHub
+{ stdenv, buildGoPackage, fetchFromGitHub }:
+
+buildGoPackage rec {
+  name = "grpcurl-${version}";
+  version = "1.0.0";
+  rev = "v${version}";
+
+  goPackagePath = "github.com/fullstorydev/grpcurl";
+
+  src = fetchFromGitHub {
+    owner = "fullstorydev";
+    repo = "grpcurl";
+    rev = "d4d048fade4abcc2f0c3fb6f3e207289401d0a10";
+    sha256 = "0v45lwjw2phavhi6m4ql49ri1423m249a6xcf00v9hi2x1y9dh6q";
+  };
+
+  goDeps = if stdenv.isDarwin
+           then ./deps-darwin.nix
+           else ./deps-linux.nix;
+
+  meta = {
+    description = "Like cURL, but for gRPC: Command-line tool for interacting with gRPC servers";
+    homepage = https://github.com/fullstorydev/grpcurl;
+    license = stdenv.lib.licenses.mit;
+    maintainers = with stdenv.lib.maintainers; [ knl ];
+  };
+}
diff --git a/pkgs/tools/networking/grpcurl/deps-darwin.nix b/pkgs/tools/networking/grpcurl/deps-darwin.nix
new file mode 100644
index 000000000000..52afa88708f3
--- /dev/null
+++ b/pkgs/tools/networking/grpcurl/deps-darwin.nix
@@ -0,0 +1,57 @@
+# This file was generated by https://github.com/kamilchm/go2nix v1.2.1
+[
+  {
+    goPackagePath = "github.com/golang/protobuf";
+    fetch = {
+      type = "git";
+      url = "https://github.com/golang/protobuf";
+      rev = "ddf22928ea3c56eb4292a0adbbf5001b1e8e7d0d";
+      sha256 = "16awkanx2rgxzhwi9vpm4i8jmmsw10gb104ncwfinvb6a9nzm28l";
+    };
+  }
+  {
+    goPackagePath = "github.com/jhump/protoreflect";
+    fetch = {
+      type = "git";
+      url = "https://github.com/jhump/protoreflect";
+      rev = "b28d968eb345542b430a717dc72a88abf10d0b95";
+      sha256 = "0i8k55xx2wyzfz635nbjqma505sn03l75mq6lgbknzwhv1xbx39s";
+    };
+  }
+  {
+    goPackagePath = "golang.org/x/net";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/net";
+      rev = "146acd28ed5894421fb5aac80ca93bc1b1f46f87";
+      sha256 = "0d177474z85nvxz8ch6y9wjqz288844wwx8q9za3x2njnk4jbgxj";
+    };
+  }
+  {
+    goPackagePath = "golang.org/x/text";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/text";
+      rev = "4d1c5fb19474adfe9562c9847ba425e7da817e81";
+      sha256 = "1y4rf9cmjyf8r56khr1sz0chbq1v0ynaj63i2z1mq6k6h6ww45da";
+    };
+  }
+  {
+    goPackagePath = "google.golang.org/genproto";
+    fetch = {
+      type = "git";
+      url = "https://github.com/google/go-genproto";
+      rev = "af9cb2a35e7f169ec875002c1829c9b315cddc04";
+      sha256 = "1942rw8h7zhbzvxn1rqn8z265sl2i14hm0z4hbfbc93slmml7p7n";
+    };
+  }
+  {
+    goPackagePath = "google.golang.org/grpc";
+    fetch = {
+      type = "git";
+      url = "https://github.com/grpc/grpc-go";
+      rev = "c195587d96d5ae30321b96a1e2e175fea09e9fda";
+      sha256 = "1av4hgaqk0hgji8ycdkgganh6bqajk2ygm4ifrmyzbm1hzwi3gg7";
+    };
+  }
+]
diff --git a/pkgs/tools/networking/grpcurl/deps-linux.nix b/pkgs/tools/networking/grpcurl/deps-linux.nix
new file mode 100644
index 000000000000..e5e775e50fea
--- /dev/null
+++ b/pkgs/tools/networking/grpcurl/deps-linux.nix
@@ -0,0 +1,66 @@
+# This file was generated by https://github.com/kamilchm/go2nix v1.2.1
+[
+  {
+    goPackagePath = "github.com/golang/protobuf";
+    fetch = {
+      type = "git";
+      url = "https://github.com/golang/protobuf";
+      rev = "ddf22928ea3c56eb4292a0adbbf5001b1e8e7d0d";
+      sha256 = "16awkanx2rgxzhwi9vpm4i8jmmsw10gb104ncwfinvb6a9nzm28l";
+    };
+  }
+  {
+    goPackagePath = "github.com/jhump/protoreflect";
+    fetch = {
+      type = "git";
+      url = "https://github.com/jhump/protoreflect";
+      rev = "b28d968eb345542b430a717dc72a88abf10d0b95";
+      sha256 = "0i8k55xx2wyzfz635nbjqma505sn03l75mq6lgbknzwhv1xbx39s";
+    };
+  }
+  {
+    goPackagePath = "golang.org/x/net";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/net";
+      rev = "49bb7cea24b1df9410e1712aa6433dae904ff66a";
+      sha256 = "111q4qm3hcjvzvyv9y5rz8ydnyg48rckcygxqy6gv63q618wz6gn";
+    };
+  }
+  {
+    goPackagePath = "golang.org/x/sys";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/sys";
+      rev = "4497e2df6f9e69048a54498c7affbbec3294ad47";
+      sha256 = "028qmbfmy84pl7wmjgvrv1x7x7nzv3qr9w7vcnrcparr43k7415s";
+    };
+  }
+  {
+    goPackagePath = "golang.org/x/text";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/text";
+      rev = "4d1c5fb19474adfe9562c9847ba425e7da817e81";
+      sha256 = "1y4rf9cmjyf8r56khr1sz0chbq1v0ynaj63i2z1mq6k6h6ww45da";
+    };
+  }
+  {
+    goPackagePath = "google.golang.org/genproto";
+    fetch = {
+      type = "git";
+      url = "https://github.com/google/go-genproto";
+      rev = "af9cb2a35e7f169ec875002c1829c9b315cddc04";
+      sha256 = "1942rw8h7zhbzvxn1rqn8z265sl2i14hm0z4hbfbc93slmml7p7n";
+    };
+  }
+  {
+    goPackagePath = "google.golang.org/grpc";
+    fetch = {
+      type = "git";
+      url = "https://github.com/grpc/grpc-go";
+      rev = "c195587d96d5ae30321b96a1e2e175fea09e9fda";
+      sha256 = "1av4hgaqk0hgji8ycdkgganh6bqajk2ygm4ifrmyzbm1hzwi3gg7";
+    };
+  }
+]
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index ae5616205efd..cea917e174b0 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -3064,6 +3064,8 @@ with pkgs;
 
   groonga = callPackage ../servers/search/groonga { };
 
+  grpcurl = callPackage ../tools/networking/grpcurl { };
+
   grub = pkgsi686Linux.callPackage ../tools/misc/grub {
     buggyBiosCDSupport = config.grub.buggyBiosCDSupport or true;
     stdenv = overrideCC stdenv pkgsi686Linux.gcc6;

From fee991333d1b70637f7bf267f9838ea500764b79 Mon Sep 17 00:00:00 2001
From: Michael Weiss <dev.primeos@gmail.com>
Date: Wed, 7 Nov 2018 14:39:28 +0100
Subject: [PATCH 0612/1129] fuse3: 3.2.6 -> 3.3.0

---
 pkgs/os-specific/linux/fuse/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/fuse/default.nix b/pkgs/os-specific/linux/fuse/default.nix
index e3313a676c99..5394edf28773 100644
--- a/pkgs/os-specific/linux/fuse/default.nix
+++ b/pkgs/os-specific/linux/fuse/default.nix
@@ -11,7 +11,7 @@ in {
   };
 
   fuse_3 = mkFuse {
-    version = "3.2.6";
-    sha256Hash = "0harsla45b0pj3khgxkcwfr2qd8pahg70ygki9i0a8pzscy64sl2";
+    version = "3.3.0";
+    sha256Hash = "1pwrnfm8jkxxqhrjz0v1gaw36hshgznchyj961qdk2y697y4zp19";
   };
 }

From d3cfda14fb63f0fd77288c52e7b6b7c5a831147d Mon Sep 17 00:00:00 2001
From: Piotr Bogdan <ppbogdan@gmail.com>
Date: Mon, 5 Nov 2018 23:59:28 +0000
Subject: [PATCH 0613/1129] gimp: get rid of compiler from the runtime closure

---
 pkgs/applications/graphics/gimp/default.nix         | 11 ++++++++++-
 .../graphics/gimp/remove-cc-reference.patch         | 13 +++++++++++++
 2 files changed, 23 insertions(+), 1 deletion(-)
 create mode 100644 pkgs/applications/graphics/gimp/remove-cc-reference.patch

diff --git a/pkgs/applications/graphics/gimp/default.nix b/pkgs/applications/graphics/gimp/default.nix
index 15033b8b2b09..729b58ee89e6 100644
--- a/pkgs/applications/graphics/gimp/default.nix
+++ b/pkgs/applications/graphics/gimp/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, pkgconfig, intltool, babl, gegl, gtk2, glib, gdk_pixbuf, isocodes
+{ stdenv, fetchurl, substituteAll, pkgconfig, intltool, babl, gegl, gtk2, glib, gdk_pixbuf, isocodes
 , pango, cairo, freetype, fontconfig, lcms, libpng, libjpeg, poppler, poppler_data, libtiff
 , libmng, librsvg, libwmf, zlib, libzip, ghostscript, aalib, shared-mime-info
 , python2Packages, libexif, gettext, xorg, glib-networking, libmypaint, gexiv2
@@ -36,6 +36,15 @@ in stdenv.mkDerivation rec {
     export GIO_EXTRA_MODULES="${glib-networking}/lib/gio/modules:$GIO_EXTRA_MODULES"
   '';
 
+  patches = [
+    # to remove compiler from the runtime closure, reference was retained via
+    # gimp --version --verbose output
+    (substituteAll {
+      src = ./remove-cc-reference.patch;
+      cc_version = stdenv.cc.cc.name;
+    })
+  ];
+
   postFixup = ''
     wrapPythonProgramsIn $out/lib/gimp/${passthru.majorVersion}/plug-ins/
     wrapProgram $out/bin/gimp-${stdenv.lib.versions.majorMinor version} \
diff --git a/pkgs/applications/graphics/gimp/remove-cc-reference.patch b/pkgs/applications/graphics/gimp/remove-cc-reference.patch
new file mode 100644
index 000000000000..0d6a87000ccd
--- /dev/null
+++ b/pkgs/applications/graphics/gimp/remove-cc-reference.patch
@@ -0,0 +1,13 @@
+diff --git a/app/gimp-version.c b/app/gimp-version.c
+index 12605c6..a9083da 100644
+--- a/app/gimp-version.c
++++ b/app/gimp-version.c
+@@ -203,7 +203,7 @@ gimp_version (gboolean be_verbose,
+       lib_versions = gimp_library_versions (localized);
+       verbose_info = g_strdup_printf ("git-describe: %s\n"
+                                       "C compiler:\n%s\n%s",
+-                                      GIMP_GIT_VERSION, CC_VERSION,
++                                      GIMP_GIT_VERSION, "@cc_version@",
+                                       lib_versions);
+       g_free (lib_versions);
+ 

From 6d531f354155043518a59161f42f24f5918e76ab Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Sat, 3 Nov 2018 13:55:50 -0500
Subject: [PATCH 0614/1129] make-derivation: enable pie hardening with musl
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Fixes #49071

On ld.gold, we produce broken executables when linking with the Musl
libc. This appears to be a known bug when using ld.gold and Musl. This
thread describes the workaround as enabling PIE when using ld.gold and
Musl:

https://www.openwall.com/lists/musl/2015/05/01/5

By default we don’t enable PIE to avoid breaking things. But in the
Musl case we are breaking things by not enabling PIE. So this adds a
special case for defaultHardeningFlags which keeps the pie hardening
for everything. Any packages that break with PIE can add the pie flag
to disableHardeningFlags array (a no-op for now on anything but Musl).
---
 pkgs/stdenv/generic/make-derivation.nix | 4 +++-
 1 file changed, 3 insertions(+), 1 deletion(-)

diff --git a/pkgs/stdenv/generic/make-derivation.nix b/pkgs/stdenv/generic/make-derivation.nix
index e06faed30a1e..6c0c94487dee 100644
--- a/pkgs/stdenv/generic/make-derivation.nix
+++ b/pkgs/stdenv/generic/make-derivation.nix
@@ -93,7 +93,9 @@ rec {
                                       ++ depsTargetTarget ++ depsTargetTargetPropagated) == 0;
       runtimeSensativeIfFixedOutput = fixedOutputDrv -> !noNonNativeDeps;
       supportedHardeningFlags = [ "fortify" "stackprotector" "pie" "pic" "strictoverflow" "format" "relro" "bindnow" ];
-      defaultHardeningFlags = lib.remove "pie" supportedHardeningFlags;
+      defaultHardeningFlags = if stdenv.targetPlatform.isMusl
+                              then supportedHardeningFlags
+                              else lib.remove "pie" supportedHardeningFlags;
       enabledHardeningOptions =
         if builtins.elem "all" hardeningDisable
         then []

From 0ba53e9f13f20922da78408c1a94d065010b9b0f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Wed, 7 Nov 2018 15:58:17 +0100
Subject: [PATCH 0615/1129] python.pkgs.py3status: 3.12 -> 3.13

---
 pkgs/development/python-modules/py3status/default.nix | 10 ++--------
 1 file changed, 2 insertions(+), 8 deletions(-)

diff --git a/pkgs/development/python-modules/py3status/default.nix b/pkgs/development/python-modules/py3status/default.nix
index fd42faaad213..b580ae898502 100644
--- a/pkgs/development/python-modules/py3status/default.nix
+++ b/pkgs/development/python-modules/py3status/default.nix
@@ -19,17 +19,11 @@
 
 buildPythonPackage rec {
   pname = "py3status";
-  version = "3.12";
+  version = "3.13";
   
   src = fetchPypi {
     inherit pname version;
-    sha256 = "c9ef49f72c2d83976d2841ab7e70faee3c77f4d7dbb2d3390ef0f0509473ea9a";
-  };
-
-  # ImportError: cannot import name '_to_ascii'
-  patches = fetchpatch {
-    url = "${meta.homepage}/commit/8a48e01cb68b514b532f56037e4f5a6c19662de5.patch";
-    sha256 = "0v1yja5lvdjk6vh13lvh07n7aw5hjcy7v9lrs2dfb0y0cjw4kx9n";
+    sha256 = "b4262db0b3b181fbf1a44679cd817c1cf0126ec34b3537550e294208f413daac";
   };
 
   doCheck = false;

From 3aec197197ea5b785707b1f8898eb7b03b33a073 Mon Sep 17 00:00:00 2001
From: Profpatsch <mail@profpatsch.de>
Date: Wed, 7 Nov 2018 16:07:00 +0100
Subject: [PATCH 0616/1129] zathura-pdf-mupdf: 0.3.3 -> 0.3.4 (#49823)

* zathura-pdf-mupdf: 0.3.3 -> 0.3.4

Support for mupdf 1.14.

* Update pkgs/applications/misc/zathura/pdf-mupdf/default.nix

Co-Authored-By: Profpatsch <mail@profpatsch.de>
---
 .../misc/zathura/pdf-mupdf/default.nix        | 19 +++++++++++++------
 1 file changed, 13 insertions(+), 6 deletions(-)

diff --git a/pkgs/applications/misc/zathura/pdf-mupdf/default.nix b/pkgs/applications/misc/zathura/pdf-mupdf/default.nix
index 9d86dfe4a445..709c1edb0b83 100644
--- a/pkgs/applications/misc/zathura/pdf-mupdf/default.nix
+++ b/pkgs/applications/misc/zathura/pdf-mupdf/default.nix
@@ -1,13 +1,20 @@
-{ stdenv, lib, meson, ninja, fetchurl, pkgconfig, zathura_core, cairo,
-gtk-mac-integration, girara, mupdf }:
+{ stdenv, lib, meson, ninja, fetchurl, fetchFromGitHub
+, pkgconfig, zathura_core, cairo , gtk-mac-integration, girara, mupdf }:
 
 stdenv.mkDerivation rec {
-  version = "0.3.3";
+  version = "0.3.4";
   name = "zathura-pdf-mupdf-${version}";
 
-  src = fetchurl {
-    url = "https://pwmt.org/projects/zathura-pdf-mupdf/download/${name}.tar.xz";
-    sha256 = "1zbdqimav4wfgimpy3nfzl10qj7vyv23rdy2z5z7z93jwbp2rc2j";
+  # pwmt.org server was down at the time of last update
+  # src = fetchurl {
+  #   url = "https://pwmt.org/projects/zathura-pdf-mupdf/download/${name}.tar.xz";
+  #   sha256 = "1zbaqimav4wfgimpy3nfzl10qj7vyv23rdy2z5z7z93jwbp2rc2j";
+  # };
+  src = fetchFromGitHub {
+    owner = "pwmt";
+    repo = "zathura-pdf-mupdf";
+    rev = version;
+    sha256 = "1m4w4jrybpjmx6pi33a5saxzmfd8rrym2k13jpd1fv543s17d9dy";
   };
 
   nativeBuildInputs = [ meson ninja pkgconfig ];

From 75f5fbe94578af9a1c5f4da245fc483864f8a891 Mon Sep 17 00:00:00 2001
From: makefu <github@syntax-fehler.de>
Date: Tue, 6 Nov 2018 22:51:32 +0100
Subject: [PATCH 0617/1129] hovercraft: 2.0 -> 2.6

move to top-level, use buildPythonApplication
---
 pkgs/applications/misc/hovercraft/default.nix | 35 ++++++++++++++++++
 .../python-modules/hovercraft/default.nix     | 36 -------------------
 pkgs/top-level/all-packages.nix               |  2 ++
 pkgs/top-level/python-packages.nix            |  2 --
 4 files changed, 37 insertions(+), 38 deletions(-)
 create mode 100644 pkgs/applications/misc/hovercraft/default.nix
 delete mode 100644 pkgs/development/python-modules/hovercraft/default.nix

diff --git a/pkgs/applications/misc/hovercraft/default.nix b/pkgs/applications/misc/hovercraft/default.nix
new file mode 100644
index 000000000000..dd0ed8511f63
--- /dev/null
+++ b/pkgs/applications/misc/hovercraft/default.nix
@@ -0,0 +1,35 @@
+{ lib
+, buildPythonApplication
+, isPy3k
+, fetchFromGitHub
+, manuel
+, setuptools
+, docutils
+, lxml
+, svg-path
+, pygments
+, watchdog
+}:
+
+buildPythonApplication rec {
+  pname = "hovercraft";
+  version = "2.6";
+  disabled = ! isPy3k;
+
+  src = fetchFromGitHub {
+    owner = "regebro";
+    repo = "hovercraft";
+    rev = version;
+    sha256 = "150sn6kvqi2s89di1akl5i0g81fasji2ipr12zq5s4dcnhw4r5wp";
+  };
+
+  checkInputs = [ manuel ];
+  propagatedBuildInputs = [ setuptools docutils lxml svg-path pygments watchdog ];
+
+  meta = with lib; {
+    description = "Makes impress.js presentations from reStructuredText";
+    homepage = https://github.com/regebro/hovercraft;
+    license = licenses.mit;
+    maintainers = with maintainers;[ goibhniu makefu ];
+  };
+}
diff --git a/pkgs/development/python-modules/hovercraft/default.nix b/pkgs/development/python-modules/hovercraft/default.nix
deleted file mode 100644
index e598fd41bab1..000000000000
--- a/pkgs/development/python-modules/hovercraft/default.nix
+++ /dev/null
@@ -1,36 +0,0 @@
-{ stdenv
-, buildPythonPackage
-, fetchPypi
-, docutils
-, lxml
-, manuel
-, pygments
-, svg-path
-, watchdog
-, isPy3k
-}:
-
-buildPythonPackage rec {
-  pname = "hovercraft";
-  version = "2.0";
-  disabled = ! isPy3k;
-
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "0lqxr816lymgnywln8bbv9nrmkyahjjcjkm9kjyny9bflayz4f1g";
-  };
-
-  propagatedBuildInputs = [ docutils lxml manuel pygments svg-path watchdog ];
-
-  # one test assumes we have docutils 0.12
-  # TODO: enable tests after upgrading docutils to 0.12
-  doCheck = false;
-
-  meta = with stdenv.lib; {
-    description = "A tool to make impress.js presentations from reStructuredText";
-    homepage = https://github.com/regebro/hovercraft;
-    license = licenses.mit;
-    maintainers = with maintainers; [ goibhniu ];
-  };
-
-}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 5a1b72ff1b38..530682766276 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -17209,6 +17209,8 @@ with pkgs;
     gtk = gtk3;
   };
 
+  hovercraft = python3Packages.callPackage ../applications/misc/hovercraft { };
+
   howl = callPackage ../applications/editors/howl { };
 
   ht = callPackage ../applications/editors/ht { };
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 05ac04a22bce..ee0548713809 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -1686,8 +1686,6 @@ in {
 
   hupper = callPackage ../development/python-modules/hupper {};
 
-  hovercraft = callPackage ../development/python-modules/hovercraft { };
-
   hsaudiotag = callPackage ../development/python-modules/hsaudiotag { };
 
   hsaudiotag3k = callPackage ../development/python-modules/hsaudiotag3k { };

From 5fdbec1417b2a6860e08a2741972dba678fd16ab Mon Sep 17 00:00:00 2001
From: James Kay <james@hadean.com>
Date: Tue, 6 Nov 2018 12:02:33 +0000
Subject: [PATCH 0618/1129] pythonPackages.autologging: init at 1.2.1

---
 .../python-modules/autologging/default.nix    | 19 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 21 insertions(+)
 create mode 100644 pkgs/development/python-modules/autologging/default.nix

diff --git a/pkgs/development/python-modules/autologging/default.nix b/pkgs/development/python-modules/autologging/default.nix
new file mode 100644
index 000000000000..090eb68675bc
--- /dev/null
+++ b/pkgs/development/python-modules/autologging/default.nix
@@ -0,0 +1,19 @@
+{ stdenv, buildPythonPackage, fetchPypi }:
+
+buildPythonPackage rec {
+  pname = "Autologging";
+  version = "1.2.1";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "16v2k16m433fxlvl7f0081n67rpxhs2hyn1ivkx1xs5qjxpv5n3k";
+    extension = "zip";
+  };
+
+  meta = with stdenv.lib; {
+    homepage = http://ninthtest.info/python-autologging/;
+    description = "Easier logging and tracing for Python classes";
+    license = licenses.mit;
+    maintainers = with maintainers; [ twey ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 1979335357ff..4e6a85faf3b1 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -202,6 +202,8 @@ in {
 
   autograd = callPackage ../development/python-modules/autograd { };
 
+  autologging = callPackage ../development/python-modules/autologging { };
+
   automat = callPackage ../development/python-modules/automat { };
 
   awkward = callPackage ../development/python-modules/awkward { };

From a7c122bd65a13eb80f1694eee7dd7d4137a1b408 Mon Sep 17 00:00:00 2001
From: James Kay <james@hadean.com>
Date: Tue, 6 Nov 2018 11:56:07 +0000
Subject: [PATCH 0619/1129] pythonPackages.click-repl: init at 0.1.6

---
 .../python-modules/click-repl/default.nix     | 20 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 22 insertions(+)
 create mode 100644 pkgs/development/python-modules/click-repl/default.nix

diff --git a/pkgs/development/python-modules/click-repl/default.nix b/pkgs/development/python-modules/click-repl/default.nix
new file mode 100644
index 000000000000..8a487ab24102
--- /dev/null
+++ b/pkgs/development/python-modules/click-repl/default.nix
@@ -0,0 +1,20 @@
+{ stdenv, buildPythonPackage, fetchPypi, click, prompt_toolkit }:
+
+buildPythonPackage rec {
+  pname = "click-repl";
+  version = "0.1.6";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1mcmz95595nrp4r58spy1ac993db26hk4q97isghbmn4md99vwmr";
+  };
+
+  propagatedBuildInputs = [ click prompt_toolkit ];
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/click-contrib/click-repl;
+    description = "Subcommand REPL for click apps";
+    license = licenses.mit;
+    maintainers = with maintainers; [ twey ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 1979335357ff..3735ad55ea51 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -1140,6 +1140,8 @@ in {
 
   click-plugins = callPackage ../development/python-modules/click-plugins {};
 
+  click-repl = callPackage ../development/python-modules/click-repl { };
+
   click-threading = callPackage ../development/python-modules/click-threading {};
 
   cligj = callPackage ../development/python-modules/cligj { };

From ded5faa82ea293b2586c9fe2962144e7b8395fb5 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Rafael=20Garc=C3=ADa=20Gallego?=
 <rafael.garcia.gallego@gmail.com>
Date: Wed, 7 Nov 2018 16:36:30 +0100
Subject: [PATCH 0620/1129] flashplayer: add libglvnd dep

---
 .../browsers/mozilla-plugins/flashplayer/default.nix         | 5 +++--
 .../browsers/mozilla-plugins/flashplayer/standalone.nix      | 5 +++--
 2 files changed, 6 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/default.nix b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/default.nix
index 38b064ec6e29..7a26a4d19700 100644
--- a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/default.nix
+++ b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/default.nix
@@ -33,6 +33,7 @@
 , libXxf86vm
 , libdrm
 , libffi
+, libglvnd
 , libpng
 , libvdpau
 , libxcb
@@ -132,8 +133,8 @@ stdenv.mkDerivation rec {
       alsaLib atk bzip2 cairo curl expat fontconfig freetype gdk_pixbuf glib
       glibc graphite2 gtk2 harfbuzz libICE libSM libX11 libXau libXcomposite
       libXcursor libXdamage libXdmcp libXext libXfixes libXi libXinerama
-      libXrandr libXrender libXt libXxf86vm libdrm libffi libpng libvdpau
-      libxcb libxshmfence nspr nss pango pcre pixman zlib
+      libXrandr libXrender libXt libXxf86vm libdrm libffi libglvnd libpng
+      libvdpau libxcb libxshmfence nspr nss pango pcre pixman zlib
     ];
 
   meta = {
diff --git a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/standalone.nix b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/standalone.nix
index 108d7c5f4a1a..5c4d0540289b 100644
--- a/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/standalone.nix
+++ b/pkgs/applications/networking/browsers/mozilla-plugins/flashplayer/standalone.nix
@@ -33,6 +33,7 @@
 , libXxf86vm
 , libdrm
 , libffi
+, libglvnd
 , libpng
 , libvdpau
 , libxcb
@@ -88,8 +89,8 @@ stdenv.mkDerivation rec {
       alsaLib atk bzip2 cairo curl expat fontconfig freetype gdk_pixbuf glib
       glibc graphite2 gtk2 harfbuzz libICE libSM libX11 libXau libXcomposite
       libXcursor libXdamage libXdmcp libXext libXfixes libXi libXinerama
-      libXrandr libXrender libXt libXxf86vm libdrm libffi libpng libvdpau
-      libxcb libxshmfence nspr nss pango pcre pixman zlib
+      libXrandr libXrender libXt libXxf86vm libdrm libffi libglvnd libpng
+      libvdpau libxcb libxshmfence nspr nss pango pcre pixman zlib
     ];
 
   meta = {

From c8d45086d17954c6ebe177b515bc1950140f92ee Mon Sep 17 00:00:00 2001
From: Andreas Rammhold <andreas@rammhold.de>
Date: Wed, 7 Nov 2018 13:21:17 +0100
Subject: [PATCH 0621/1129] firefox-esr-60: drop skia patch on aarch64

---
 .../applications/networking/browsers/firefox/packages.nix | 8 +-------
 1 file changed, 1 insertion(+), 7 deletions(-)

diff --git a/pkgs/applications/networking/browsers/firefox/packages.nix b/pkgs/applications/networking/browsers/firefox/packages.nix
index c338f9981ef3..87bc770415c3 100644
--- a/pkgs/applications/networking/browsers/firefox/packages.nix
+++ b/pkgs/applications/networking/browsers/firefox/packages.nix
@@ -8,12 +8,6 @@ let
     ./env_var_for_system_dir.patch
   ];
 
-  firefox60_aarch64_skia_patch = fetchpatch {
-    name = "aarch64-skia.patch";
-    url = https://src.fedoraproject.org/rpms/firefox/raw/8cff86d95da3190272d1beddd45b41de3148f8ef/f/build-aarch64-skia.patch;
-    sha256 = "11acb0ms4jrswp7268nm2p8g8l4lv8zc666a5bqjbb09x9k6b78k";
-  };
-
 in
 
 rec {
@@ -82,7 +76,7 @@ rec {
       # this one is actually an omnipresent bug
       # https://bugzilla.mozilla.org/show_bug.cgi?id=1444519
       ./fix-pa-context-connect-retval.patch
-    ] ++ lib.optional stdenv.isAarch64 firefox60_aarch64_skia_patch;
+    ];
 
     meta = firefox.meta // {
       description = "A web browser built from Firefox Extended Support Release source tree";

From 933561399507d4d03e4d0247a90784f1035fc3ea Mon Sep 17 00:00:00 2001
From: Christian Albrecht <christian.albrecht@mayflower.de>
Date: Sat, 27 Oct 2018 07:30:48 +0200
Subject: [PATCH 0622/1129] vagrant: 2.1.2 -> 2.2.0

---
 pkgs/development/tools/vagrant/default.nix |  4 +-
 pkgs/development/tools/vagrant/gemset.nix  | 47 +++++++++++++---------
 2 files changed, 30 insertions(+), 21 deletions(-)

diff --git a/pkgs/development/tools/vagrant/default.nix b/pkgs/development/tools/vagrant/default.nix
index ecc1a2d00946..c06d1d0f9d0a 100644
--- a/pkgs/development/tools/vagrant/default.nix
+++ b/pkgs/development/tools/vagrant/default.nix
@@ -3,9 +3,9 @@
 let
   # NOTE: bumping the version and updating the hash is insufficient;
   # you must use bundix to generate a new gemset.nix in the Vagrant source.
-  version = "2.1.2";
+  version = "2.2.0";
   url = "https://github.com/hashicorp/vagrant/archive/v${version}.tar.gz";
-  sha256 = "0fb90v43d30whhyjlgb9mmy93ccbpr01pz97kp5hrg3wfd7703b1";
+  sha256 = "1wa8l3j6hpy0m0snz7wvfcf0wsjikp22c2z29crpk10f7xl7c56b";
 
   deps = bundlerEnv rec {
     name = "${pname}-${version}";
diff --git a/pkgs/development/tools/vagrant/gemset.nix b/pkgs/development/tools/vagrant/gemset.nix
index 598f5cc67235..39eeb02ce55c 100644
--- a/pkgs/development/tools/vagrant/gemset.nix
+++ b/pkgs/development/tools/vagrant/gemset.nix
@@ -70,10 +70,10 @@
   ffi = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0zw6pbyvmj8wafdc7l5h7w20zkp1vbr2805ql5d941g2b20pk4zr";
+      sha256 = "0jpm2dis1j7zvvy3lg7axz9jml316zrn7s0j59vyq3qr127z0m7q";
       type = "gem";
     };
-    version = "1.9.23";
+    version = "1.9.25";
   };
   gssapi = {
     dependencies = ["ffi"];
@@ -172,18 +172,18 @@
     dependencies = ["mime-types-data"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0087z9kbnlqhci7fxh9f6il63hj1k02icq2rs0c6cppmqchr753m";
+      sha256 = "0fjxy1jm52ixpnv3vg9ld9pr9f35gy0jp66i1njhqjvmnvq0iwwk";
       type = "gem";
     };
-    version = "3.1";
+    version = "3.2.2";
   };
   mime-types-data = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "04my3746hwa4yvbx1ranhfaqkgf6vavi1kyijjnw8w3dy37vqhkm";
+      sha256 = "07wvp0aw2gjm4njibb70as6rh5hi1zzri5vky1q6jx95h8l56idc";
       type = "gem";
     };
-    version = "3.2016.0521";
+    version = "3.2018.0812";
   };
   multi_json = {
     source = {
@@ -214,10 +214,10 @@
   net-ssh = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "07c4v97zl1daabmri9zlbzs6yvkl56z1q14bw74d53jdj0c17nhx";
+      sha256 = "0qfanf71yv8w7yl9l9wqcy68i2x1ghvnf8m581yy4pl0anfdhqw8";
       type = "gem";
     };
-    version = "4.2.0";
+    version = "5.0.2";
   };
   netrc = {
     source = {
@@ -238,10 +238,10 @@
   public_suffix = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "0mvzd9ycjw8ydb9qy3daq3kdzqs2vpqvac4dqss6ckk4rfcjc637";
+      sha256 = "08q64b5br692dd3v0a9wq9q5dvycc6kmiqmjbdxkxbfizggsvx6l";
       type = "gem";
     };
-    version = "3.0.1";
+    version = "3.0.3";
   };
   rake = {
     source = {
@@ -358,10 +358,10 @@
   rubyzip = {
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "06js4gznzgh8ac2ldvmjcmg9v1vg9llm357yckkpylaj6z456zqz";
+      sha256 = "1n1lb2sdwh9h27y244hxzg1lrxxg2m53pk1vq7p33bna003qkyrj";
       type = "gem";
     };
-    version = "1.2.1";
+    version = "1.2.2";
   };
   safe_yaml = {
     source = {
@@ -397,19 +397,28 @@
     version = "0.0.7.5";
   };
   vagrant = {
-    dependencies = ["childprocess" "erubis" "hashicorp-checkpoint" "i18n" "listen" "log4r" "net-scp" "net-sftp" "net-ssh" "rb-kqueue" "rest-client" "ruby_dep" "wdm" "winrm" "winrm-elevated" "winrm-fs"];
+    dependencies = ["childprocess" "erubis" "hashicorp-checkpoint" "i18n" "listen" "log4r" "net-scp" "net-sftp" "net-ssh" "rb-kqueue" "rest-client" "ruby_dep" "rubyzip" "vagrant_cloud" "wdm" "winrm" "winrm-elevated" "winrm-fs"];
   };
   vagrant-spec = {
     dependencies = ["childprocess" "log4r" "rspec" "thor"];
     source = {
       fetchSubmodules = false;
-      rev = "9413ab298407114528766efefd1fb1ff24589636";
-      sha256 = "1z77m3p6x82hipa7y4i71zafy0rdfajw2vhqdxczjmrlwp0pvisl";
+      rev = "abfc34474d122235d56e4c6b6fb5d3e35bedfa90";
+      sha256 = "08xy2c82lrxkwjlvrbx1v32968a6psni3952y3knriqgygv2kzbn";
       type = "git";
       url = "https://github.com/hashicorp/vagrant-spec.git";
     };
     version = "0.0.1";
   };
+  vagrant_cloud = {
+    dependencies = ["rest-client"];
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "0k325a1cblj3jd2av8a6j3xsjjm36g578gpbmxw7h5dbffp49il1";
+      type = "gem";
+    };
+    version = "2.0.1";
+  };
   wdm = {
     source = {
       remotes = ["https://rubygems.org"];
@@ -431,10 +440,10 @@
     dependencies = ["builder" "erubis" "gssapi" "gyoku" "httpclient" "logging" "nori" "rubyntlm"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "02lzbixdbjvhmb0byqx9rl9x4xx9pqc8jwm7y6mmp7w7mri72zh6";
+      sha256 = "05c1xji4afwxx4vgim5n4nj62zbyppmm67ci3kwi0jjrqaj9y11q";
       type = "gem";
     };
-    version = "2.2.3";
+    version = "2.3.0";
   };
   winrm-elevated = {
     dependencies = ["winrm" "winrm-fs"];
@@ -449,9 +458,9 @@
     dependencies = ["erubis" "logging" "rubyzip" "winrm"];
     source = {
       remotes = ["https://rubygems.org"];
-      sha256 = "1i3w2j2rmhjqj8lynca2m1dm1m5fv1x35xwhk3vyr15dn260z56g";
+      sha256 = "12g9grzp03knh1nxcicnm93pmlf4r264lhvl5yviyri8swmqlbz5";
       type = "gem";
     };
-    version = "1.2.0";
+    version = "1.3.1";
   };
 }
\ No newline at end of file

From 7ed92b1497818a2c8d0f17769b126be8fbc620c2 Mon Sep 17 00:00:00 2001
From: Christian Albrecht <christian.albrecht@mayflower.de>
Date: Sat, 27 Oct 2018 08:28:58 +0200
Subject: [PATCH 0623/1129] vagrant-libvirt: init at 2.2.0

Adds a flag and a new package to build vagrant with libvirt support,
to be able to install and use the vagrant-libvirt plugin.
---
 pkgs/development/tools/vagrant/default.nix    | 15 +++++++++++----
 .../tools/vagrant/gemset_libvirt.nix          | 19 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  1 +
 3 files changed, 31 insertions(+), 4 deletions(-)
 create mode 100644 pkgs/development/tools/vagrant/gemset_libvirt.nix

diff --git a/pkgs/development/tools/vagrant/default.nix b/pkgs/development/tools/vagrant/default.nix
index c06d1d0f9d0a..2b77d5358196 100644
--- a/pkgs/development/tools/vagrant/default.nix
+++ b/pkgs/development/tools/vagrant/default.nix
@@ -1,4 +1,4 @@
-{ lib, fetchurl, buildRubyGem, bundlerEnv, ruby, libarchive, writeText }:
+{ lib, fetchurl, buildRubyGem, bundlerEnv, ruby, libarchive, writeText, withLibvirt ? false, libvirt, pkgconfig }:
 
 let
   # NOTE: bumping the version and updating the hash is insufficient;
@@ -15,7 +15,7 @@ let
     inherit ruby;
     gemfile = writeText "Gemfile" "";
     lockfile = writeText "Gemfile.lock" "";
-    gemset = lib.recursiveUpdate (import ./gemset.nix) {
+    gemset = lib.recursiveUpdate (import ./gemset.nix) ({
       vagrant = {
         source = {
           type = "url";
@@ -23,7 +23,7 @@ let
         };
         inherit version;
       };
-    };
+    } // lib.optionalAttrs withLibvirt (import ./gemset_libvirt.nix));
   };
 
 in buildRubyGem rec {
@@ -35,6 +35,8 @@ in buildRubyGem rec {
   dontBuild = false;
   src = fetchurl { inherit url sha256; };
 
+  buildInputs = lib.optional withLibvirt [ libvirt pkgconfig ];
+
   patches = [
     ./unofficial-installation-nowarn.patch
     ./use-system-bundler-version.patch
@@ -45,7 +47,12 @@ in buildRubyGem rec {
   postInstall = ''
     wrapProgram "$out/bin/vagrant" \
       --set GEM_PATH "${deps}/lib/ruby/gems/${ruby.version.libDir}" \
-      --prefix PATH ':' "${lib.getBin libarchive}/bin"
+      --prefix PATH ':' "${lib.getBin libarchive}/bin" \
+      ${lib.optionalString withLibvirt ''
+        --prefix PATH ':' "${pkgconfig}/bin" \
+        --prefix PKG_CONFIG_PATH ':' \
+          "${lib.makeSearchPath "lib/pkgconfig" [ libvirt ]}"
+      ''}
   '';
 
   installCheckPhase = ''
diff --git a/pkgs/development/tools/vagrant/gemset_libvirt.nix b/pkgs/development/tools/vagrant/gemset_libvirt.nix
new file mode 100644
index 000000000000..aeaf42341a87
--- /dev/null
+++ b/pkgs/development/tools/vagrant/gemset_libvirt.nix
@@ -0,0 +1,19 @@
+{
+  mini_portile2 = {
+    source = {
+      remotes = ["https://rubygems.org"];
+      sha256 = "0gzfmcywp1da8nzfqsql2zqi648mfnx6qwkig3cv36n9m0yy676y";
+      type = "gem";
+    };
+    version = "2.3.0";
+  };
+  nokogiri = {
+    dependencies = ["mini_portile2"];
+      source = {
+        remotes = ["https://rubygems.org"];
+        sha256 = "0byyxrazkfm29ypcx5q4syrv126nvjnf7z6bqi01sqkv4llsi4qz";
+        type = "gem";
+      };
+    version = "1.8.5";
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index cea917e174b0..1be3e6d6c996 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -8990,6 +8990,7 @@ with pkgs;
   universal-ctags = callPackage ../development/tools/misc/universal-ctags { };
 
   vagrant = callPackage ../development/tools/vagrant {};
+  vagrant-libvirt = self.vagrant.override { withLibvirt = true; };
 
   bashdb = callPackage ../development/tools/misc/bashdb { };
 

From c5e8ae3f0ba8fd104e85f940982a0076014695a1 Mon Sep 17 00:00:00 2001
From: Christian Albrecht <christian.albrecht@mayflower.de>
Date: Mon, 5 Nov 2018 16:42:24 +0100
Subject: [PATCH 0624/1129] vagrant: do withLibvitr by default #49220

---
 pkgs/development/tools/vagrant/default.nix | 2 +-
 pkgs/top-level/all-packages.nix            | 1 -
 2 files changed, 1 insertion(+), 2 deletions(-)

diff --git a/pkgs/development/tools/vagrant/default.nix b/pkgs/development/tools/vagrant/default.nix
index 2b77d5358196..74992560f3fc 100644
--- a/pkgs/development/tools/vagrant/default.nix
+++ b/pkgs/development/tools/vagrant/default.nix
@@ -1,4 +1,4 @@
-{ lib, fetchurl, buildRubyGem, bundlerEnv, ruby, libarchive, writeText, withLibvirt ? false, libvirt, pkgconfig }:
+{ lib, fetchurl, buildRubyGem, bundlerEnv, ruby, libarchive, writeText, withLibvirt ? true, libvirt, pkgconfig }:
 
 let
   # NOTE: bumping the version and updating the hash is insufficient;
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 1be3e6d6c996..cea917e174b0 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -8990,7 +8990,6 @@ with pkgs;
   universal-ctags = callPackage ../development/tools/misc/universal-ctags { };
 
   vagrant = callPackage ../development/tools/vagrant {};
-  vagrant-libvirt = self.vagrant.override { withLibvirt = true; };
 
   bashdb = callPackage ../development/tools/misc/bashdb { };
 

From 4d8cf0b84e1e87a7f19e3f18649f2bfeaf46ca0c Mon Sep 17 00:00:00 2001
From: Kai Wohlfahrt <kai@prodo.ai>
Date: Wed, 7 Nov 2018 17:09:54 +0000
Subject: [PATCH 0625/1129] pytorch: disable distributed tests

These fail with sandboxing
---
 pkgs/development/python-modules/pytorch/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/pytorch/default.nix b/pkgs/development/python-modules/pytorch/default.nix
index 7d56f1990a52..b0ae9ef0cf55 100644
--- a/pkgs/development/python-modules/pytorch/default.nix
+++ b/pkgs/development/python-modules/pytorch/default.nix
@@ -72,7 +72,7 @@ in buildPythonPackage rec {
   ] ++ lib.optional (pythonOlder "3.5") typing;
 
   checkPhase = ''
-    ${cudaStubEnv}python test/run_test.py --exclude dataloader sparse torch utils
+    ${cudaStubEnv}python test/run_test.py --exclude dataloader sparse torch utils distributed
   '';
 
   meta = {

From 1d0517ddb35e5c0b5a9c6eaa1ce79a3b55821cc3 Mon Sep 17 00:00:00 2001
From: aszlig <aszlig@nix.build>
Date: Wed, 7 Nov 2018 18:21:07 +0100
Subject: [PATCH 0626/1129] ip2unix: 1.1.0 -> 1.1.1

Upstream fixes:

  * Don't unlink target socket path if connect is used after bind.

Signed-off-by: aszlig <aszlig@nix.build>
---
 pkgs/tools/networking/ip2unix/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/networking/ip2unix/default.nix b/pkgs/tools/networking/ip2unix/default.nix
index 57f1cf564f2c..18a53d02b1ec 100644
--- a/pkgs/tools/networking/ip2unix/default.nix
+++ b/pkgs/tools/networking/ip2unix/default.nix
@@ -4,13 +4,13 @@
 
 stdenv.mkDerivation rec {
   name = "ip2unix-${version}";
-  version = "1.1.0";
+  version = "1.1.1";
 
   src = fetchFromGitHub {
     owner = "nixcloud";
     repo = "ip2unix";
     rev = "v${version}";
-    sha256 = "11scvwbnwivvsp2c9vfwzgmd3gprnhj9y170594bc3iisbdlj69k";
+    sha256 = "0lw4f1p1frfpf5l7faqdd80d6pi9g5sx7g3wpmig9sa50k6pmc0v";
   };
 
   nativeBuildInputs = [

From 9ec968fbf00825e2fb78db5084ec7da21d320f57 Mon Sep 17 00:00:00 2001
From: Elis Hirwing <elis@hirwing.se>
Date: Wed, 7 Nov 2018 18:32:42 +0100
Subject: [PATCH 0627/1129] dmrconfig: Install udev rules

---
 pkgs/applications/misc/dmrconfig/default.nix | 6 ++++--
 1 file changed, 4 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/dmrconfig/default.nix b/pkgs/applications/misc/dmrconfig/default.nix
index 9edf5e4f88c2..5e2a99e9ce0a 100644
--- a/pkgs/applications/misc/dmrconfig/default.nix
+++ b/pkgs/applications/misc/dmrconfig/default.nix
@@ -20,8 +20,10 @@ stdenv.mkDerivation rec {
     substituteInPlace Makefile --replace /usr/local/bin/dmrconfig $out/bin/dmrconfig
   '';
 
-  preInstall = ''
-    mkdir -p $out/bin
+  installPhase = ''
+    mkdir -p $out/bin $out/lib/udev/rules.d
+    make install
+    install 99-dmr.rules $out/lib/udev/rules.d/99-dmr.rules
   '';
 
   meta = with stdenv.lib; {

From c3668db8241c4324a935ce511a7e0519742f94f5 Mon Sep 17 00:00:00 2001
From: James Kay <james@hadean.com>
Date: Tue, 18 Sep 2018 18:21:26 +0100
Subject: [PATCH 0628/1129] python2Packages.plyplus: init at 0.7.5

---
 .../python-modules/plyplus/default.nix        | 21 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 23 insertions(+)
 create mode 100644 pkgs/development/python-modules/plyplus/default.nix

diff --git a/pkgs/development/python-modules/plyplus/default.nix b/pkgs/development/python-modules/plyplus/default.nix
new file mode 100644
index 000000000000..2b18d114f3f6
--- /dev/null
+++ b/pkgs/development/python-modules/plyplus/default.nix
@@ -0,0 +1,21 @@
+{ lib, fetchPypi, buildPythonPackage, ply, isPy3k }:
+buildPythonPackage rec {
+  pname = "PlyPlus";
+  version = "0.7.5";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0g3flgfm3jpb2d8v9z0qmbwca5gxdqr10cs3zvlfhv5cs06ahpnp";
+  };
+
+  propagatedBuildInputs = [ ply ];
+
+  disabled = isPy3k;
+
+  meta = {
+    homepage = https://github.com/erezsh/plyplus;
+    description = "A general-purpose parser built on top of PLY";
+    maintainers = with lib.maintainers; [ twey ];
+    license = lib.licenses.mit;
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 2ce0751069c6..d0b31ef797db 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -3024,6 +3024,8 @@ in {
 
   ply = callPackage ../development/python-modules/ply { };
 
+  plyplus = callPackage ../development/python-modules/plyplus { };
+
   plyvel = callPackage ../development/python-modules/plyvel { };
 
   osc = callPackage ../development/python-modules/osc { };

From 16a54d6b2bb9dccb72cf8457719fdaff75352b3b Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Wed, 7 Nov 2018 19:10:34 +0100
Subject: [PATCH 0629/1129] alacritty: add cf-private on darwin

    note: Undefined symbols for architecture x86_64:
            "_CFURLResourceIsReachable", referenced from:
                alacritty::config::Monitor::new::_$u7b$$u7b$closure$u7d$$u7d$::h8c82fbfba8a3a673 in alacritty-6a8d3226ed5c4bef.alacritty.9tpyu7jw-cgu.1.rcgu.o
            "_NSDefaultRunLoopMode", referenced from:
                alacritty::main::hd6e46019b2208595 in alacritty-6a8d3226ed5c4bef.alacritty.9tpyu7jw-cgu.1.rcgu.o
          ld: symbol(s) not found for architecture x86_64
          clang-5.0: error: linker command failed with exit code 1 (use -v to see invocation)
---
 pkgs/applications/misc/alacritty/default.nix | 16 ++++++----------
 pkgs/top-level/all-packages.nix              |  1 +
 2 files changed, 7 insertions(+), 10 deletions(-)

diff --git a/pkgs/applications/misc/alacritty/default.nix b/pkgs/applications/misc/alacritty/default.nix
index 594173f11c62..5237e02f15c0 100644
--- a/pkgs/applications/misc/alacritty/default.nix
+++ b/pkgs/applications/misc/alacritty/default.nix
@@ -18,6 +18,7 @@
   libGL,
   xclip,
   # Darwin Frameworks
+  cf-private,
   AppKit,
   CoreFoundation,
   CoreGraphics,
@@ -40,15 +41,6 @@ let
     libGL
     libXi
   ];
-  darwinFrameworks = [
-    AppKit
-    CoreFoundation
-    CoreGraphics
-    CoreServices
-    CoreText
-    Foundation
-    OpenGL
-  ];
 in buildRustPackage rec {
   name = "alacritty-unstable-${version}";
   version = "0.2.1";
@@ -71,7 +63,11 @@ in buildRustPackage rec {
   ];
 
   buildInputs = rpathLibs
-             ++ lib.optionals stdenv.isDarwin darwinFrameworks;
+    ++ lib.optionals stdenv.isDarwin [
+      AppKit CoreFoundation CoreGraphics CoreServices CoreText Foundation OpenGL
+      # Needed for CFURLResourceIsReachable symbols.
+      cf-private
+    ];
 
   outputs = [ "out" "terminfo" ];
 
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index cea917e174b0..574e727afbad 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -519,6 +519,7 @@ with pkgs;
 
   alacritty = callPackage ../applications/misc/alacritty {
     inherit (xorg) libXcursor libXxf86vm libXi;
+    inherit (darwin) cf-private;
     inherit (darwin.apple_sdk.frameworks) AppKit CoreFoundation CoreGraphics CoreServices CoreText Foundation OpenGL;
   };
 

From ee1c6f62f842837bc4c723bd799f892c557c0789 Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Wed, 7 Nov 2018 19:15:43 +0100
Subject: [PATCH 0630/1129] darwin.trash: add cf-private

    Undefined symbols for architecture x86_64:
      "_OBJC_CLASS_$_NSMutableArray", referenced from:
          objc-class-ref in trash-571f39.o
      "_OBJC_CLASS_$_NSURL", referenced from:
          objc-class-ref in trash-571f39.o
      "_OBJC_CLASS_$_NSUserDefaults", referenced from:
          objc-class-ref in trash-571f39.o
          objc-class-ref in HGCLIUtils-31f3b3.o
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/os-specific/darwin/trash/default.nix | 11 ++++++-----
 pkgs/top-level/darwin-packages.nix        |  2 +-
 2 files changed, 7 insertions(+), 6 deletions(-)

diff --git a/pkgs/os-specific/darwin/trash/default.nix b/pkgs/os-specific/darwin/trash/default.nix
index 7f327fcf3d7a..e1606383c0dc 100644
--- a/pkgs/os-specific/darwin/trash/default.nix
+++ b/pkgs/os-specific/darwin/trash/default.nix
@@ -1,4 +1,5 @@
-{ stdenv, fetchFromGitHub, frameworks, perl } :
+{ stdenv, fetchFromGitHub, perl, cf-private, AppKit, Cocoa, ScriptingBridge }:
+
 stdenv.mkDerivation rec {
   version = "0.9.1";
   name = "trash-${version}";
@@ -10,11 +11,11 @@ stdenv.mkDerivation rec {
     sha256 = "0ylkf7jxfy1pj7i1s48w28kzqjdfd57m2pw0jycsgcj5bkzwll41";
   };
 
-  buildInputs = with frameworks; [
-    Cocoa
-    AppKit
-    ScriptingBridge
+  buildInputs = [
     perl
+    Cocoa AppKit ScriptingBridge
+    # Neded for OBJC_CLASS_$_NSMutableArray symbols.
+    cf-private
   ];
 
   patches = [ ./trash.diff ];
diff --git a/pkgs/top-level/darwin-packages.nix b/pkgs/top-level/darwin-packages.nix
index 78ca0d20908d..b52afe98f7fa 100644
--- a/pkgs/top-level/darwin-packages.nix
+++ b/pkgs/top-level/darwin-packages.nix
@@ -66,7 +66,7 @@ in
 
   stubs = callPackages ../os-specific/darwin/stubs { };
 
-  trash = callPackage ../os-specific/darwin/trash { inherit (darwin.apple_sdk) frameworks; };
+  trash = darwin.callPackage ../os-specific/darwin/trash { };
 
   usr-include = callPackage ../os-specific/darwin/usr-include { };
 

From b378760b081bee1125d16df92a18189019d25ccf Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Wed, 7 Nov 2018 19:18:17 +0100
Subject: [PATCH 0631/1129] emacs25: add cf-private on darwin and don't
 propagate frameworks

    Undefined symbols for architecture x86_64:
      "_CFNotificationCenterAddObserver", referenced from:
          _macfont_copy_available_families_cache in macfont.o
      "_CFNotificationCenterGetLocalCenter", referenced from:
          _macfont_copy_available_families_cache in macfont.o
      "_NSDefaultRunLoopMode", referenced from:
          _ns_send_appdefined in nsterm.o
          -[EmacsApp run] in nsterm.o
      "_OBJC_CLASS_$_NSArray", referenced from:
          objc-class-ref in nsterm.o
          objc-class-ref in nsmenu.o
          objc-class-ref in nsselect.o
      "_OBJC_CLASS_$_NSData", referenced from:
          objc-class-ref in nsimage.o
      "_OBJC_CLASS_$_NSDate", referenced from:
          objc-class-ref in nsterm.o
      "_OBJC_CLASS_$_NSDictionary", referenced from:
          objc-class-ref in macfont.o
      "_OBJC_CLASS_$_NSLocale", referenced from:
          objc-class-ref in nsterm.o
      "_OBJC_CLASS_$_NSMutableArray", referenced from:
          objc-class-ref in nsterm.o
          objc-class-ref in nsmenu.o
      "_OBJC_CLASS_$_NSMutableDictionary", referenced from:
          objc-class-ref in nsmenu.o
          objc-class-ref in nsselect.o
      "_OBJC_CLASS_$_NSMutableSet", referenced from:
          objc-class-ref in nsterm.o
      "_OBJC_CLASS_$_NSRunLoop", referenced from:
          objc-class-ref in nsmenu.o
      "_OBJC_CLASS_$_NSTimer", referenced from:
          objc-class-ref in nsterm.o
          objc-class-ref in nsmenu.o
      "_OBJC_CLASS_$_NSURL", referenced from:
          objc-class-ref in nsterm.o
          objc-class-ref in nsfns.o
      "_OBJC_CLASS_$_NSUserDefaults", referenced from:
          objc-class-ref in nsterm.o
          objc-class-ref in nsfns.o
      "_OBJC_EHTYPE_$_NSException", referenced from:
          GCC_except_table8 in nsterm.o
          GCC_except_table1 in nsselect.o
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/applications/editors/emacs/25.nix | 11 +++++++----
 pkgs/top-level/all-packages.nix        |  1 +
 2 files changed, 8 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/editors/emacs/25.nix b/pkgs/applications/editors/emacs/25.nix
index ee21bbbd9bd9..6576cd544729 100644
--- a/pkgs/applications/editors/emacs/25.nix
+++ b/pkgs/applications/editors/emacs/25.nix
@@ -1,7 +1,7 @@
 { stdenv, lib, fetchurl, ncurses, xlibsWrapper, libXaw, libXpm, Xaw3d
 , pkgconfig, gettext, libXft, dbus, libpng, libjpeg, libungif
 , libtiff, librsvg, gconf, libxml2, imagemagick, gnutls, libselinux
-, alsaLib, cairo, acl, gpm, AppKit, GSS, ImageIO
+, alsaLib, cairo, acl, gpm, cf-private, AppKit, GSS, ImageIO
 , withX ? !stdenv.isDarwin
 , withGTK2 ? false, gtk2 ? null
 , withGTK3 ? true, gtk3 ? null, gsettings-desktop-schemas ? null
@@ -61,9 +61,12 @@ stdenv.mkDerivation rec {
     ++ lib.optional (withX && withGTK2) gtk2
     ++ lib.optionals (withX && withGTK3) [ gtk3 gsettings-desktop-schemas ]
     ++ lib.optional (stdenv.isDarwin && withX) cairo
-    ++ lib.optionals (withX && withXwidgets) [ webkitgtk24x-gtk3 glib-networking ];
-
-  propagatedBuildInputs = lib.optionals stdenv.isDarwin [ AppKit GSS ImageIO ];
+    ++ lib.optionals (withX && withXwidgets) [ webkitgtk24x-gtk3 glib-networking ]
+    ++ lib.optionals stdenv.isDarwin [
+      AppKit GSS ImageIO
+      # Needed for CFNotificationCenterAddObserver symbols.
+      cf-private
+    ];
 
   hardeningDisable = [ "format" ];
 
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 574e727afbad..18e5201be6bb 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -16372,6 +16372,7 @@ with pkgs;
     imagemagick = null;
     acl = null;
     gpm = null;
+    inherit (darwin) cf-private;
     inherit (darwin.apple_sdk.frameworks) AppKit GSS ImageIO;
   };
 

From ca51000e585d1e8aa16679a09fd3151b529d5d03 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Wed, 7 Nov 2018 19:40:03 +0100
Subject: [PATCH 0632/1129] haskell.packages.ghc843: drop obsolete package set

The underlying compiler is already gone.

Fixes https://github.com/NixOS/nixpkgs/issues/49877.
---
 pkgs/top-level/haskell-packages.nix | 5 -----
 1 file changed, 5 deletions(-)

diff --git a/pkgs/top-level/haskell-packages.nix b/pkgs/top-level/haskell-packages.nix
index ebf1d264f590..2b77c731e63a 100644
--- a/pkgs/top-level/haskell-packages.nix
+++ b/pkgs/top-level/haskell-packages.nix
@@ -119,11 +119,6 @@ in {
       ghc = bh.compiler.ghc822;
       compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-8.2.x.nix { };
     };
-    ghc843 = callPackage ../development/haskell-modules {
-      buildHaskellPackages = bh.packages.ghc843;
-      ghc = bh.compiler.ghc843;
-      compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-8.4.x.nix { };
-    };
     ghc844 = callPackage ../development/haskell-modules {
       buildHaskellPackages = bh.packages.ghc844;
       ghc = bh.compiler.ghc844;

From 551ef1ac41bd14b43f97ec5226cac4f13432df52 Mon Sep 17 00:00:00 2001
From: Andreas Rammhold <andreas@rammhold.de>
Date: Tue, 11 Sep 2018 10:12:06 +0200
Subject: [PATCH 0633/1129] firefox: provide clang configure flags on i686

With the upgrade to firefox 62 clang flags are now required on i686.

(cherry picked from commit acf4a4eff315a52d8f9c944a167ecb373bc1fdf9)
---
 pkgs/applications/networking/browsers/firefox/common.nix | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/browsers/firefox/common.nix b/pkgs/applications/networking/browsers/firefox/common.nix
index 16c9b548325e..f900b1b69cfd 100644
--- a/pkgs/applications/networking/browsers/firefox/common.nix
+++ b/pkgs/applications/networking/browsers/firefox/common.nix
@@ -196,8 +196,7 @@ stdenv.mkDerivation rec {
   ]
   ++ lib.optional (stdenv.isDarwin && lib.versionAtLeast ffversion "61") "--disable-xcode-checks"
   ++ lib.optional (lib.versionOlder ffversion "61") "--enable-system-hunspell"
-  ++ lib.optionals (lib.versionAtLeast ffversion "56" && !stdenv.hostPlatform.isi686) [
-    # on i686-linux: --with-libclang-path is not available in this configuration
+  ++ lib.optionals (lib.versionAtLeast ffversion "56") [
     "--with-libclang-path=${llvmPackages.libclang}/lib"
     "--with-clang-path=${llvmPackages.clang}/bin/clang"
   ]

From 51251b446cb19447d0866ce3ed9d1102605f5916 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 26 Oct 2018 14:06:37 -0700
Subject: [PATCH 0634/1129] pcsclite: 1.8.23 -> 1.8.24
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/pcsclite/versions

(cherry picked from commit f174ae0f4f8c594624b34dc2fc77fe3755e785fb)
Signed-off-by: Domen Kožar <domen@dev.si>
(cherry picked from commit 7cf572d87abfafcde7b7142ea403445385612233)
Signed-off-by: Domen Kožar <domen@dev.si>
---
 pkgs/tools/security/pcsclite/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/security/pcsclite/default.nix b/pkgs/tools/security/pcsclite/default.nix
index 495b6ee48ea7..95f9bf16ebac 100644
--- a/pkgs/tools/security/pcsclite/default.nix
+++ b/pkgs/tools/security/pcsclite/default.nix
@@ -3,13 +3,13 @@
 
 stdenv.mkDerivation rec {
   name = "pcsclite-${version}";
-  version = "1.8.23";
+  version = "1.8.24";
 
   outputs = [ "bin" "out" "dev" "doc" "man" ];
 
   src = fetchurl {
     url = "https://pcsclite.apdu.fr/files/pcsc-lite-${version}.tar.bz2";
-    sha256 = "1jc9ws5ra6v3plwraqixin0w0wfxj64drahrbkyrrwzghqjjc9ss";
+    sha256 = "0s3mv6csbi9303vvis0hilm71xsmi6cqkbh2kiipdisydbx6865q";
   };
 
   patches = [ ./no-dropdir-literals.patch ];

From 51e8c7943cb1b5c71e1746a7d47941d5f5171d4b Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Wed, 7 Nov 2018 12:51:22 -0600
Subject: [PATCH 0635/1129] dovecot: remove install_name_tool

No longer needed now that libclucene has the right install name.
---
 pkgs/servers/mail/dovecot/default.nix | 7 -------
 1 file changed, 7 deletions(-)

diff --git a/pkgs/servers/mail/dovecot/default.nix b/pkgs/servers/mail/dovecot/default.nix
index 638393bd356a..8f60929e2f7c 100644
--- a/pkgs/servers/mail/dovecot/default.nix
+++ b/pkgs/servers/mail/dovecot/default.nix
@@ -34,13 +34,6 @@ stdenv.mkDerivation rec {
   postInstall = ''
     cp -r $out/$out/* $out
     rm -rf $out/$(echo "$out" | cut -d "/" -f2)
-  '' + lib.optionalString stdenv.isDarwin ''
-    install_name_tool -change libclucene-shared.1.dylib \
-        ${clucene_core_2}/lib/libclucene-shared.1.dylib \
-        $out/lib/dovecot/lib21_fts_lucene_plugin.so
-    install_name_tool -change libclucene-core.1.dylib \
-        ${clucene_core_2}/lib/libclucene-core.1.dylib \
-        $out/lib/dovecot/lib21_fts_lucene_plugin.so
   '';
 
   patches = [

From 865cbd380d2568806c6e46c9a4bc746af7ec13c9 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Wed, 7 Nov 2018 12:59:30 -0600
Subject: [PATCH 0636/1129] darwin-tested: readd wireshark

It has been working for some time on darwin and can be added to our
blocking job list.
---
 pkgs/top-level/release.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/top-level/release.nix b/pkgs/top-level/release.nix
index 59e3d5133bbe..9bdad5473d4e 100644
--- a/pkgs/top-level/release.nix
+++ b/pkgs/top-level/release.nix
@@ -66,7 +66,7 @@ let
               jobs.inkscape.x86_64-darwin
               # jobs.gimp.x86_64-darwin
               jobs.emacs.x86_64-darwin
-              # jobs.wireshark.x86_64-darwin
+              jobs.wireshark.x86_64-darwin
               jobs.transmission-gtk.x86_64-darwin
 
               # Tests

From 72e6e792f63e0a441f5fbd0f466e7b6124b24493 Mon Sep 17 00:00:00 2001
From: Timo Kaufmann <timokau@zoho.com>
Date: Sun, 28 Oct 2018 13:28:22 +0100
Subject: [PATCH 0637/1129] sage: add fetchSageDiff utility function

---
 pkgs/applications/science/math/sage/sage-src.nix | 14 +++++++++++++-
 1 file changed, 13 insertions(+), 1 deletion(-)

diff --git a/pkgs/applications/science/math/sage/sage-src.nix b/pkgs/applications/science/math/sage/sage-src.nix
index f631fe38a5b0..f8e538b5053e 100644
--- a/pkgs/applications/science/math/sage/sage-src.nix
+++ b/pkgs/applications/science/math/sage/sage-src.nix
@@ -39,7 +39,19 @@ stdenv.mkDerivation rec {
     ./patches/Only-test-py2-py3-optional-tests-when-all-of-sage-is.patch
   ];
 
-  packageUpgradePatches = [
+  packageUpgradePatches = let
+    # fetch a diff between base and rev on sage's git server
+    # used to fetch trac tickets by setting the base to the release and the
+    # revision to the last commit that should be included
+    fetchSageDiff = { base, rev, ...}@args: (
+      fetchpatch ({
+        url = "https://git.sagemath.org/sage.git/patch?id2=${base}&id=${rev}";
+        # We don't care about sage's own build system (which builds all its dependencies).
+        # Exclude build system changes to avoid conflicts.
+        excludes = [ "build/*" ];
+      } // builtins.removeAttrs args [ "rev" "base" ])
+    );
+  in [
     # New glpk version has new warnings, filter those out until upstream sage has found a solution
     # https://trac.sagemath.org/ticket/24824
     ./patches/pari-stackwarn.patch # not actually necessary since tha pari upgrade, but necessary for the glpk patch to apply

From efe6322ce4cbae8427e202518736b7cd10529873 Mon Sep 17 00:00:00 2001
From: Timo Kaufmann <timokau@zoho.com>
Date: Wed, 24 Oct 2018 15:34:13 +0200
Subject: [PATCH 0638/1129] pythonPackages.networkx: 2.1 -> 2.2

---
 pkgs/applications/science/math/sage/sage-src.nix  | 15 +++++++++++++++
 .../python-modules/networkx/default.nix           |  5 +++--
 2 files changed, 18 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/science/math/sage/sage-src.nix b/pkgs/applications/science/math/sage/sage-src.nix
index f8e538b5053e..b32e063f39dc 100644
--- a/pkgs/applications/science/math/sage/sage-src.nix
+++ b/pkgs/applications/science/math/sage/sage-src.nix
@@ -77,6 +77,21 @@ stdenv.mkDerivation rec {
       url = "https://git.sagemath.org/sage.git/patch/?id=30cc778d46579bd0c7537ed33e8d7a4f40fd5c31";
       sha256 = "13vc2q799dh745sm59xjjabllfj0sfjzcacf8k59kwj04x755d30";
     })
+
+    # https://trac.sagemath.org/ticket/26326
+    # needs to be split because there is a merge commit in between
+    (fetchSageDiff {
+      name = "networkx-2.2-1.patch";
+      base = "8.4";
+      rev = "68f5ad068184745b38ba6716bf967c8c956c52c5";
+      sha256 = "112b5ywdqgyzgvql2jj5ss8la9i8rgnrzs8vigsfzg4shrcgh9p6";
+    })
+    (fetchSageDiff {
+      name = "networkx-2.2-2.patch";
+      base = "626485bbe5f33bf143d6dfba4de9c242f757f59b~1";
+      rev = "db10d327ade93711da735a599a67580524e6f7b4";
+      sha256 = "09v87id25fa5r9snfn4mv79syhc77jxfawj5aizmdpwdmpgxjk1f";
+    })
   ];
 
   patches = nixPatches ++ packageUpgradePatches ++ [
diff --git a/pkgs/development/python-modules/networkx/default.nix b/pkgs/development/python-modules/networkx/default.nix
index 3388aef9cef1..85b53bd9df68 100644
--- a/pkgs/development/python-modules/networkx/default.nix
+++ b/pkgs/development/python-modules/networkx/default.nix
@@ -7,12 +7,13 @@
 
 buildPythonPackage rec {
   pname = "networkx";
-  version = "2.1";
+  # upgrade may break sage, please test the sage build or ping @timokau on upgrade
+  version = "2.2";
 
   src = fetchPypi {
     inherit pname version;
     extension = "zip";
-    sha256 = "64272ca418972b70a196cb15d9c85a5a6041f09a2f32e0d30c0255f25d458bb1";
+    sha256 = "12swxb15299v9vqjsq4z8rgh5sdhvpx497xwnhpnb0gynrx6zra5";
   };
 
   checkInputs = [ nose ];

From 644c864637d438a5c8f23c26b82d3ea8d72e36aa Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Wed, 7 Nov 2018 11:16:50 -0800
Subject: [PATCH 0639/1129] vimPlugins.direnv-vim: init at 2017-12-29

---
 pkgs/misc/vim-plugins/generated.nix    | 10 ++++++++++
 pkgs/misc/vim-plugins/vim-plugin-names |  1 +
 2 files changed, 11 insertions(+)

diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix
index d9ceb20e9412..7da7f0931901 100644
--- a/pkgs/misc/vim-plugins/generated.nix
+++ b/pkgs/misc/vim-plugins/generated.nix
@@ -436,6 +436,16 @@
     };
   };
 
+  direnv-vim = buildVimPluginFrom2Nix {
+    name = "direnv-vim-2017-12-29";
+    src = fetchFromGitHub {
+      owner = "direnv";
+      repo = "direnv.vim";
+      rev = "4d6271f0facd57a478c0d02895775dc01f577c5c";
+      sha256 = "1vfg4hrxbqc96w694cn9gzjvwkscd111fp6dqlh7wpd2z3ciw07h";
+    };
+  };
+
   echodoc-vim = buildVimPluginFrom2Nix {
     name = "echodoc-vim-2018-10-20";
     src = fetchFromGitHub {
diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names
index 33049c834a26..74a7b06b4dd7 100644
--- a/pkgs/misc/vim-plugins/vim-plugin-names
+++ b/pkgs/misc/vim-plugins/vim-plugin-names
@@ -42,6 +42,7 @@ derekelkins/agda-vim
 derekwyatt/vim-scala
 dhruvasagar/vim-table-mode
 digitaltoad/vim-jade
+direnv/direnv.vim
 dleonard0/pony-vim-syntax
 dracula/vim
 drmingdrmer/xptemplate

From 73cddf1e95a3d5aee6e113766a6af24d29c879f7 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Wed, 7 Nov 2018 11:17:51 -0800
Subject: [PATCH 0640/1129] vimPlugins.vim-terraform: init at 2018-08-02

---
 pkgs/misc/vim-plugins/generated.nix    | 10 ++++++++++
 pkgs/misc/vim-plugins/vim-plugin-names |  1 +
 2 files changed, 11 insertions(+)

diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix
index 7da7f0931901..8243eb8e4ef6 100644
--- a/pkgs/misc/vim-plugins/generated.nix
+++ b/pkgs/misc/vim-plugins/generated.nix
@@ -3090,6 +3090,16 @@
     };
   };
 
+  vim-terraform = buildVimPluginFrom2Nix {
+    name = "vim-terraform-2018-08-02";
+    src = fetchFromGitHub {
+      owner = "hashivim";
+      repo = "vim-terraform";
+      rev = "7c11252da45c6508524e022d1f2588134902d8d1";
+      sha256 = "1qnjjcin934i7yd2fd0xapraindrpavnik1fasv10x5dw8yzxyrs";
+    };
+  };
+
   vim-test = buildVimPluginFrom2Nix {
     name = "vim-test-2018-10-24";
     src = fetchFromGitHub {
diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names
index 74a7b06b4dd7..33511a6efca6 100644
--- a/pkgs/misc/vim-plugins/vim-plugin-names
+++ b/pkgs/misc/vim-plugins/vim-plugin-names
@@ -78,6 +78,7 @@ google/vim-jsonnet
 google/vim-maktaba
 gregsexton/gitv
 guns/xterm-color-table.vim
+hashivim/vim-terraform
 haya14busa/incsearch-easymotion.vim
 haya14busa/incsearch.vim
 heavenshell/vim-jsdoc

From 349f3dfe25401e64e01560cd7dc8374dba407614 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Wed, 7 Nov 2018 13:18:33 -0600
Subject: [PATCH 0641/1129] shogun: use openblas

shogun needs the cblas.h header file to be available. It used to get
it from liblapack, but that is not available anymore. Instead we can
use openblasCompat to get it.
---
 pkgs/applications/science/machine-learning/shogun/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/science/machine-learning/shogun/default.nix b/pkgs/applications/science/machine-learning/shogun/default.nix
index 0ac40b1e7d42..402ef0d95882 100644
--- a/pkgs/applications/science/machine-learning/shogun/default.nix
+++ b/pkgs/applications/science/machine-learning/shogun/default.nix
@@ -2,7 +2,7 @@
 # data, compression
 , bzip2, curl, hdf5, json_c, lzma, lzo, protobuf, snappy
 # maths
-, blas, eigen, nlopt, lp_solve, colpack
+, openblasCompat, eigen, nlopt, lp_solve, colpack
 # libraries
 , libarchive, liblapack, libxml2
 # extra support
@@ -41,7 +41,7 @@ stdenv.mkDerivation rec {
   CCACHE_DIR=".ccache";
 
   buildInputs = with lib; [
-      blas bzip2 ccache cmake colpack curl ctags eigen hdf5 json_c lp_solve lzma lzo
+      openblasCompat bzip2 ccache cmake colpack curl ctags eigen hdf5 json_c lp_solve lzma lzo
       protobuf nlopt snappy swig (libarchive.dev) liblapack libxml2
     ]
     ++ optionals (pythonSupport) (with pythonPackages; [ python ply numpy ])

From 24770039e5fdea65f38e32e7b34853a57693a521 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Wed, 7 Nov 2018 11:19:43 -0800
Subject: [PATCH 0642/1129] vimPlugins.emmet-vim: init at 2018-10-06

---
 pkgs/misc/vim-plugins/generated.nix    | 11 +++++++++++
 pkgs/misc/vim-plugins/vim-plugin-names |  1 +
 2 files changed, 12 insertions(+)

diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix
index 8243eb8e4ef6..3de4ee5d1b07 100644
--- a/pkgs/misc/vim-plugins/generated.nix
+++ b/pkgs/misc/vim-plugins/generated.nix
@@ -477,6 +477,17 @@
     };
   };
 
+  emmet-vim = buildVimPluginFrom2Nix {
+    name = "emmet-vim-2018-10-06";
+    src = fetchFromGitHub {
+      owner = "mattn";
+      repo = "emmet-vim";
+      rev = "7a4bf3463ef1e2c08393218fc67a8729c00948a5";
+      sha256 = "15y5h7b6ll7nngaq9i44xb88rw2jg5ahbvybdn7kdf0nq1m3z409";
+      fetchSubmodules = true;
+    };
+  };
+
   ensime-vim = buildVimPluginFrom2Nix {
     name = "ensime-vim-2018-10-10";
     src = fetchFromGitHub {
diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names
index 33511a6efca6..b4bbfc852d73 100644
--- a/pkgs/misc/vim-plugins/vim-plugin-names
+++ b/pkgs/misc/vim-plugins/vim-plugin-names
@@ -167,6 +167,7 @@ MarcWeber/vim-addon-syntax-checker
 MarcWeber/vim-addon-toggle-buffer
 MarcWeber/vim-addon-xdebug
 martinda/Jenkinsfile-vim-syntax
+mattn/emmet-vim
 mattn/gist-vim
 mattn/webapi-vim
 mbbill/undotree

From cb2b89fa08aee218ec285c74bce0acc054692d7a Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Wed, 7 Nov 2018 11:20:09 -0800
Subject: [PATCH 0643/1129] vimPlugins.pig-vim: init at 2017-06-08

---
 pkgs/misc/vim-plugins/generated.nix    | 10 ++++++++++
 pkgs/misc/vim-plugins/vim-plugin-names |  1 +
 2 files changed, 11 insertions(+)

diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix
index 3de4ee5d1b07..6ac661eebb0a 100644
--- a/pkgs/misc/vim-plugins/generated.nix
+++ b/pkgs/misc/vim-plugins/generated.nix
@@ -1150,6 +1150,16 @@
     };
   };
 
+  pig-vim = buildVimPluginFrom2Nix {
+    name = "pig-vim-2017-06-08";
+    src = fetchFromGitHub {
+      owner = "motus";
+      repo = "pig.vim";
+      rev = "60d8a0883d3e474e61af46b581a5ce3af65e9bb5";
+      sha256 = "0az48a3slpzljb69d60cpahkshmdbss0snc8lmvf4yrc1gx8yncv";
+    };
+  };
+
   pony-vim-syntax = buildVimPluginFrom2Nix {
     name = "pony-vim-syntax-2017-09-26";
     src = fetchFromGitHub {
diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names
index b4bbfc852d73..5e38fe4cf992 100644
--- a/pkgs/misc/vim-plugins/vim-plugin-names
+++ b/pkgs/misc/vim-plugins/vim-plugin-names
@@ -184,6 +184,7 @@ mileszs/ack.vim
 mindriot101/vim-yapf
 mkasa/lushtags
 morhetz/gruvbox
+motus/pig.vim
 mpickering/hlint-refactor-vim
 nathanaelkane/vim-indent-guides
 nbouscal/vim-stylish-haskell

From 366a625f04bd500517ff35979ccf08eb61c66c3f Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Wed, 7 Nov 2018 11:20:41 -0800
Subject: [PATCH 0644/1129] vimPlugins.PreserveNoEOL: init at 2013-06-14

---
 pkgs/misc/vim-plugins/generated.nix    | 10 ++++++++++
 pkgs/misc/vim-plugins/vim-plugin-names |  1 +
 2 files changed, 11 insertions(+)

diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix
index 6ac661eebb0a..65fabb02a774 100644
--- a/pkgs/misc/vim-plugins/generated.nix
+++ b/pkgs/misc/vim-plugins/generated.nix
@@ -1170,6 +1170,16 @@
     };
   };
 
+  PreserveNoEOL = buildVimPluginFrom2Nix {
+    name = "PreserveNoEOL-2013-06-14";
+    src = fetchFromGitHub {
+      owner = "vim-scripts";
+      repo = "PreserveNoEOL";
+      rev = "940e3ce90e54d8680bec1135a21dcfbd6c9bfb62";
+      sha256 = "1726jpr2zf6jrb00pp082ikbx4mll3a877pnzs6i18f9fgpaqqgd";
+    };
+  };
+
   psc-ide-vim = buildVimPluginFrom2Nix {
     name = "psc-ide-vim-2018-03-11";
     src = fetchFromGitHub {
diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names
index 5e38fe4cf992..578af53d7a35 100644
--- a/pkgs/misc/vim-plugins/vim-plugin-names
+++ b/pkgs/misc/vim-plugins/vim-plugin-names
@@ -322,6 +322,7 @@ vim-scripts/Colour-Sampler-Pack
 vim-scripts/Improved-AnsiEsc
 vim-scripts/matchit.zip
 vim-scripts/mayansmoke
+vim-scripts/PreserveNoEOL
 vim-scripts/random.vim
 vim-scripts/Rename
 vim-scripts/ReplaceWithRegister

From 6a5efe07044e630863c2350c741dc421bbefbe86 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Wed, 7 Nov 2018 11:21:04 -0800
Subject: [PATCH 0645/1129] vimPlugins.traces-vim: init at 2018-10-14

---
 pkgs/misc/vim-plugins/generated.nix    | 10 ++++++++++
 pkgs/misc/vim-plugins/vim-plugin-names |  1 +
 2 files changed, 11 insertions(+)

diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix
index 65fabb02a774..2cdfed97d339 100644
--- a/pkgs/misc/vim-plugins/generated.nix
+++ b/pkgs/misc/vim-plugins/generated.nix
@@ -1520,6 +1520,16 @@
     };
   };
 
+  traces-vim = buildVimPluginFrom2Nix {
+    name = "traces-vim-2018-10-14";
+    src = fetchFromGitHub {
+      owner = "markonm";
+      repo = "traces.vim";
+      rev = "9520ed3837340028b871a9e497dd0d0b07cb4953";
+      sha256 = "0dfm04c4v0qk2f7fycpkwhbws0m5q383bizyaslflb1mmx3jnc48";
+    };
+  };
+
   tslime-vim = buildVimPluginFrom2Nix {
     name = "tslime-vim-2018-07-23";
     src = fetchFromGitHub {
diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names
index 578af53d7a35..a25001eb4956 100644
--- a/pkgs/misc/vim-plugins/vim-plugin-names
+++ b/pkgs/misc/vim-plugins/vim-plugin-names
@@ -166,6 +166,7 @@ MarcWeber/vim-addon-sql
 MarcWeber/vim-addon-syntax-checker
 MarcWeber/vim-addon-toggle-buffer
 MarcWeber/vim-addon-xdebug
+markonm/traces.vim
 martinda/Jenkinsfile-vim-syntax
 mattn/emmet-vim
 mattn/gist-vim

From f5b9fd6f6dee7ea8edb154264a5a8c61ec2f8e20 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Wed, 7 Nov 2018 11:21:26 -0800
Subject: [PATCH 0646/1129] vimPlugins.vim-better-whitespace: init at
 2018-06-11

---
 pkgs/misc/vim-plugins/generated.nix    | 10 ++++++++++
 pkgs/misc/vim-plugins/vim-plugin-names |  1 +
 2 files changed, 11 insertions(+)

diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix
index 2cdfed97d339..dde6a19d51e1 100644
--- a/pkgs/misc/vim-plugins/generated.nix
+++ b/pkgs/misc/vim-plugins/generated.nix
@@ -1880,6 +1880,16 @@
     };
   };
 
+  vim-better-whitespace = buildVimPluginFrom2Nix {
+    name = "vim-better-whitespace-2018-06-11";
+    src = fetchFromGitHub {
+      owner = "ntpeters";
+      repo = "vim-better-whitespace";
+      rev = "70a38fa9683e8cd0635264dd1b69c6ccbee4e3e7";
+      sha256 = "1w16mrvydbvj9msi8p4ym1vasjx6kr4yd8jdhndz0pr3qasn2ix9";
+    };
+  };
+
   vim-buffergator = buildVimPluginFrom2Nix {
     name = "vim-buffergator-2018-05-02";
     src = fetchFromGitHub {
diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names
index a25001eb4956..36c0eebb91ae 100644
--- a/pkgs/misc/vim-plugins/vim-plugin-names
+++ b/pkgs/misc/vim-plugins/vim-plugin-names
@@ -201,6 +201,7 @@ neutaaaaan/iosvkem
 nixprime/cpsm
 NLKNguyen/papercolor-theme
 noc7c9/vim-iced-coffee-script
+ntpeters/vim-better-whitespace
 nvie/vim-flake8
 osyo-manga/shabadou.vim
 osyo-manga/vim-anzu

From 4b65df6c0c5d1cd493e1a3f4d2ab4869f348bb28 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Wed, 7 Nov 2018 11:21:50 -0800
Subject: [PATCH 0647/1129] vimPlugins.vim-colemak: init at 2016-10-16

---
 pkgs/misc/vim-plugins/generated.nix    | 10 ++++++++++
 pkgs/misc/vim-plugins/vim-plugin-names |  1 +
 2 files changed, 11 insertions(+)

diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix
index dde6a19d51e1..6869672f4dca 100644
--- a/pkgs/misc/vim-plugins/generated.nix
+++ b/pkgs/misc/vim-plugins/generated.nix
@@ -1940,6 +1940,16 @@
     };
   };
 
+  vim-colemak = buildVimPluginFrom2Nix {
+    name = "vim-colemak-2016-10-16";
+    src = fetchFromGitHub {
+      owner = "kalbasit";
+      repo = "vim-colemak";
+      rev = "6ac1c0bf362845355c65dfeab9a9987c1b4dc7ec";
+      sha256 = "1li7yc5vglrhf7w7i7gs2i7ihdb1bhx85basmpgqlf7790lv1599";
+    };
+  };
+
   vim-colors-solarized = buildVimPluginFrom2Nix {
     name = "vim-colors-solarized-2011-05-09";
     src = fetchFromGitHub {
diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names
index 36c0eebb91ae..9fa24162a8be 100644
--- a/pkgs/misc/vim-plugins/vim-plugin-names
+++ b/pkgs/misc/vim-plugins/vim-plugin-names
@@ -120,6 +120,7 @@ junegunn/vim-plug
 justincampbell/vim-eighties
 justinmk/vim-dirvish
 KabbAmine/zeavim.vim
+kalbasit/vim-colemak
 kana/vim-niceblock
 kana/vim-operator-replace
 kana/vim-operator-user

From cd935e5c718eef55f826650915608dca2548318b Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Wed, 7 Nov 2018 11:22:12 -0800
Subject: [PATCH 0648/1129] vimPlugins.vissort-vim: init at 2014-01-31

---
 pkgs/misc/vim-plugins/generated.nix    | 10 ++++++++++
 pkgs/misc/vim-plugins/vim-plugin-names |  1 +
 2 files changed, 11 insertions(+)

diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix
index 6869672f4dca..3cad0d47de20 100644
--- a/pkgs/misc/vim-plugins/generated.nix
+++ b/pkgs/misc/vim-plugins/generated.nix
@@ -3401,6 +3401,16 @@
     };
   };
 
+  vissort-vim = buildVimPluginFrom2Nix {
+    name = "vissort-vim-2014-01-31";
+    src = fetchFromGitHub {
+      owner = "navicore";
+      repo = "vissort.vim";
+      rev = "75a5b08b64d2f762206bffd294066533891fa03c";
+      sha256 = "0a71b22apkhicca9nkd06jlcnqkf583mlpfh2mvl4d474viavqfn";
+    };
+  };
+
   vundle = buildVimPluginFrom2Nix {
     name = "vundle-2018-02-03";
     src = fetchFromGitHub {
diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names
index 9fa24162a8be..b6686f8fccc3 100644
--- a/pkgs/misc/vim-plugins/vim-plugin-names
+++ b/pkgs/misc/vim-plugins/vim-plugin-names
@@ -189,6 +189,7 @@ morhetz/gruvbox
 motus/pig.vim
 mpickering/hlint-refactor-vim
 nathanaelkane/vim-indent-guides
+navicore/vissort.vim
 nbouscal/vim-stylish-haskell
 ncm2/ncm2
 ncm2/ncm2-bufword

From 96bf4622382fd0c8190f3d8a000841cab8433966 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Wed, 7 Nov 2018 11:22:36 -0800
Subject: [PATCH 0649/1129] vimPlugins.zoomwintab-vim: init at 2018-04-14

---
 pkgs/misc/vim-plugins/generated.nix    | 10 ++++++++++
 pkgs/misc/vim-plugins/vim-plugin-names |  1 +
 2 files changed, 11 insertions(+)

diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix
index 3cad0d47de20..6057a65f09b5 100644
--- a/pkgs/misc/vim-plugins/generated.nix
+++ b/pkgs/misc/vim-plugins/generated.nix
@@ -3541,4 +3541,14 @@
       sha256 = "1zp1bz3fzcwvdw3qgiyvmd5imrzjh7rnpnjpxm8mma0kxi2bnl3g";
     };
   };
+
+  zoomwintab-vim = buildVimPluginFrom2Nix {
+    name = "zoomwintab-vim-2018-04-14";
+    src = fetchFromGitHub {
+      owner = "troydm";
+      repo = "zoomwintab.vim";
+      rev = "5bbbd1f79e40839a34803627e11f9e662f639fe0";
+      sha256 = "04pv7mmlz9ccgzfg8sycqxplaxpbyh7pmhwcw47b2xwnazjz49d6";
+    };
+  };
 }
\ No newline at end of file
diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names
index b6686f8fccc3..c38b146c877b 100644
--- a/pkgs/misc/vim-plugins/vim-plugin-names
+++ b/pkgs/misc/vim-plugins/vim-plugin-names
@@ -303,6 +303,7 @@ tpope/vim-tbone
 tpope/vim-unimpaired
 tpope/vim-vinegar
 travitch/hasksyn
+troydm/zoomwintab.vim
 twinside/vim-haskellconceal
 Twinside/vim-hoogle
 tyru/caw.vim

From cf4b714ab15b5769e785ec6b7de54249a5b46d82 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Wed, 7 Nov 2018 11:23:19 -0800
Subject: [PATCH 0650/1129] vimPlugins.yats-vim: init at 2018-10-17

---
 pkgs/misc/vim-plugins/generated.nix    | 11 +++++++++++
 pkgs/misc/vim-plugins/vim-plugin-names |  1 +
 2 files changed, 12 insertions(+)

diff --git a/pkgs/misc/vim-plugins/generated.nix b/pkgs/misc/vim-plugins/generated.nix
index 6057a65f09b5..47f337aa1c55 100644
--- a/pkgs/misc/vim-plugins/generated.nix
+++ b/pkgs/misc/vim-plugins/generated.nix
@@ -3491,6 +3491,17 @@
     };
   };
 
+  yats-vim = buildVimPluginFrom2Nix {
+    name = "yats-vim-2018-10-17";
+    src = fetchFromGitHub {
+      owner = "HerringtonDarkholme";
+      repo = "yats.vim";
+      rev = "4675d7ff4b04aa5c5eabd5a1d862fcf78a7cd759";
+      sha256 = "1hb36d4lb79dzn4idmar8zq1w4ya4a52a5gpzksj9x9k4fx6gakr";
+      fetchSubmodules = true;
+    };
+  };
+
   youcompleteme = buildVimPluginFrom2Nix {
     name = "youcompleteme-2018-10-14";
     src = fetchFromGitHub {
diff --git a/pkgs/misc/vim-plugins/vim-plugin-names b/pkgs/misc/vim-plugins/vim-plugin-names
index c38b146c877b..8e580bb84dcf 100644
--- a/pkgs/misc/vim-plugins/vim-plugin-names
+++ b/pkgs/misc/vim-plugins/vim-plugin-names
@@ -83,6 +83,7 @@ haya14busa/incsearch-easymotion.vim
 haya14busa/incsearch.vim
 heavenshell/vim-jsdoc
 hecal3/vim-leader-guide
+HerringtonDarkholme/yats.vim
 honza/vim-snippets
 hsanson/vim-android
 ianks/vim-tsx

From f2c49bd4cb2ff498a68b838ee56757e614f78704 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Wed, 7 Nov 2018 13:26:09 -0600
Subject: [PATCH 0651/1129] aliases: remove liblapackWithAtlas
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

This doesn’t make any sense to keep - we don’t have a liblapack with
atlas anymore.
---
 pkgs/top-level/aliases.nix | 1 -
 1 file changed, 1 deletion(-)

diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix
index afd8fed91562..9c146c16b089 100644
--- a/pkgs/top-level/aliases.nix
+++ b/pkgs/top-level/aliases.nix
@@ -164,7 +164,6 @@ mapAliases ({
   libintlOrEmpty = stdenv.lib.optional (!stdenv.isLinux || stdenv.hostPlatform.libc != "glibc") gettext; # added 2018-03-14
   libjson_rpc_cpp = libjson-rpc-cpp; # added 2017-02-28
   liblapackWithoutAtlas = liblapack; # added 2018-11-05
-  liblapackWithAtlas = liblapack; # added 2018-11-05
   libmysql = mysql.connector-c; # added # 2017-12-28, this was a misnomer refering to libmysqlclient
   librecad2 = librecad;  # backwards compatibility alias, added 2015-10
   libsysfs = sysfsutils; # added 2018-04-25

From f528731fe9724056c706e30e17ecb299707e17e9 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Dani=C3=ABl=20de=20Kok?= <me@danieldk.eu>
Date: Wed, 7 Nov 2018 20:26:30 +0100
Subject: [PATCH 0652/1129] makemkv: 1.12.3 -> 1.14.0

Changes: https://www.makemkv.com/download/history.html

Since this derivation only support Linux on x86_64, set the platform
meta data accordingly.
---
 pkgs/applications/video/makemkv/default.nix | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/video/makemkv/default.nix b/pkgs/applications/video/makemkv/default.nix
index c55f4bc5fb2a..b25560c50c90 100644
--- a/pkgs/applications/video/makemkv/default.nix
+++ b/pkgs/applications/video/makemkv/default.nix
@@ -4,17 +4,17 @@
 
 stdenv.mkDerivation rec {
   name = "makemkv-${ver}";
-  ver = "1.12.3";
+  ver = "1.14.0";
   builder = ./builder.sh;
 
   src_bin = fetchurl {
     url = "http://www.makemkv.com/download/makemkv-bin-${ver}.tar.gz";
-    sha256 = "0rggpzp7gp4y6gxnhl4saxpdwnaivwkildpwbjjh7zvmgka3749a";
+    sha256 = "1xm5pww6jf3m704y7d7nc2ni2a6ygxwb2c665agg2i059sppwz1f";
   };
 
   src_oss = fetchurl {
     url = "http://www.makemkv.com/download/makemkv-oss-${ver}.tar.gz";
-    sha256 = "1w0l2rq9gyzli5ilw82v27d8v7fmchc1wdzcq06q1bsm9wmnbx1r";
+    sha256 = "1ihma2nv7zgqx1psgj3bdz723h94f4vk8mbahxl1v4v2rn9kg25z";
   };
 
   nativeBuildInputs = [ pkgconfig ];
@@ -36,6 +36,7 @@ stdenv.mkDerivation rec {
     '';
     license = licenses.unfree;
     homepage = http://makemkv.com;
+    platforms = [ "x86_64-linux" ];
     maintainers = [ maintainers.titanous ];
   };
 }

From 8bdd30edab8e749916fbb78de52941399ad48e72 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Wed, 7 Nov 2018 11:54:58 -0800
Subject: [PATCH 0653/1129] vimPlugins.gist-vim: gist-vim depends on WebApi

---
 pkgs/misc/vim-plugins/overrides.nix | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/pkgs/misc/vim-plugins/overrides.nix b/pkgs/misc/vim-plugins/overrides.nix
index 64fb9ef9693c..39b0246d0d38 100644
--- a/pkgs/misc/vim-plugins/overrides.nix
+++ b/pkgs/misc/vim-plugins/overrides.nix
@@ -162,6 +162,10 @@ with generated;
     dependencies = ["self"];
   });
 
+  gist-vim = gist-vim.overrideAttrs(old: {
+    dependencies = ["webapi-vim"];
+  });
+
   gitv = gitv.overrideAttrs(old: {
     dependencies = ["gitv"];
   });

From 8e1a70de4370c7c80b273405764f509ae8364bd1 Mon Sep 17 00:00:00 2001
From: Michael Weiss <dev.primeos@gmail.com>
Date: Wed, 7 Nov 2018 21:15:58 +0100
Subject: [PATCH 0654/1129] androidStudioPackages.beta: 3.3.0.14 -> 3.3.0.15

---
 pkgs/applications/editors/android-studio/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/editors/android-studio/default.nix b/pkgs/applications/editors/android-studio/default.nix
index e97e22e4a9ef..2c4daf4fa2c6 100644
--- a/pkgs/applications/editors/android-studio/default.nix
+++ b/pkgs/applications/editors/android-studio/default.nix
@@ -13,9 +13,9 @@ let
     sha256Hash = "117skqjax1xz9plarhdnrw2rwprjpybdc7mx7wggxapyy920vv5r";
   };
   betaVersion = {
-    version = "3.3.0.14"; # "Android Studio 3.3 Beta 2"
-    build = "182.5078385";
-    sha256Hash = "10jw508fzxbknfl1l058ksnnli2nav91wmh2x2p0mz96lkf5bvhn";
+    version = "3.3.0.15"; # "Android Studio 3.3 Beta 3"
+    build = "182.5105271";
+    sha256Hash = "03j3g39v1g4jf5q37bd50zfqsgjfnwnyhjgx8vkfwlg263vhhvdq";
   };
   latestVersion = { # canary & dev
     version = "3.4.0.1"; # "Android Studio 3.4 Canary 2"

From 2be51107e35964c45b61062c86fe39330cbd54af Mon Sep 17 00:00:00 2001
From: Michael Weiss <dev.primeos@gmail.com>
Date: Wed, 7 Nov 2018 21:20:16 +0100
Subject: [PATCH 0655/1129] androidStudioPackages.{dev,canary}: 3.4.0.1 ->
 3.4.0.2

---
 pkgs/applications/editors/android-studio/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/editors/android-studio/default.nix b/pkgs/applications/editors/android-studio/default.nix
index 2c4daf4fa2c6..f2e77d65f05f 100644
--- a/pkgs/applications/editors/android-studio/default.nix
+++ b/pkgs/applications/editors/android-studio/default.nix
@@ -18,9 +18,9 @@ let
     sha256Hash = "03j3g39v1g4jf5q37bd50zfqsgjfnwnyhjgx8vkfwlg263vhhvdq";
   };
   latestVersion = { # canary & dev
-    version = "3.4.0.1"; # "Android Studio 3.4 Canary 2"
-    build = "183.5081642";
-    sha256Hash = "0ck6habkgnwbr10pr3bfy8ywm3dsm21k9jdj7g685v22sw0zy3yk";
+    version = "3.4.0.2"; # "Android Studio 3.4 Canary 3"
+    build = "183.5112304";
+    sha256Hash = "0dzk4ag1dirfq8l2q91j6hsfyi07wx52qcsmbjb9a2710rlwpdhp";
   };
 in rec {
   # Old alias

From db7e9408a1b5c0d7d103c28b91646b374968b045 Mon Sep 17 00:00:00 2001
From: Gabriel Ebner <gebner@gebner.org>
Date: Wed, 7 Nov 2018 22:25:09 +0100
Subject: [PATCH 0656/1129] virtmanager: 1.5.1 -> 2.0.0

---
 .../virtualization/virt-manager/default.nix        | 14 +++++++-------
 1 file changed, 7 insertions(+), 7 deletions(-)

diff --git a/pkgs/applications/virtualization/virt-manager/default.nix b/pkgs/applications/virtualization/virt-manager/default.nix
index 40395568f4ba..f2cbe75b8690 100644
--- a/pkgs/applications/virtualization/virt-manager/default.nix
+++ b/pkgs/applications/virtualization/virt-manager/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, python2Packages, intltool, file
+{ stdenv, fetchurl, python3Packages, intltool, file
 , wrapGAppsHook, gtk-vnc, vte, avahi, dconf
 , gobjectIntrospection, libvirt-glib, system-libvirt
 , gsettings-desktop-schemas, glib, libosinfo, gnome3, gtk3
@@ -8,14 +8,14 @@
 
 with stdenv.lib;
 
-python2Packages.buildPythonApplication rec {
+python3Packages.buildPythonApplication rec {
   name = "virt-manager-${version}";
-  version = "1.5.1";
+  version = "2.0.0";
   namePrefix = "";
 
   src = fetchurl {
     url = "http://virt-manager.org/download/sources/virt-manager/${name}.tar.gz";
-    sha256 = "1ardmd4sxdmd57y7qpka44gf09c1yq2g0xs074d3k1h925crv27f";
+    sha256 = "1b48xbrx99mfiv80c60k3ydzkpcpbq57c8h8dl0gnffmnzbs8vzb";
   };
 
   nativeBuildInputs = [
@@ -28,9 +28,9 @@ python2Packages.buildPythonApplication rec {
       gsettings-desktop-schemas libosinfo gtk3
     ] ++ optional spiceSupport spice-gtk;
 
-  propagatedBuildInputs = with python2Packages;
+  propagatedBuildInputs = with python3Packages;
     [
-      pygobject3 ipaddr libvirt libxml2 requests
+      pygobject3 ipaddress libvirt libxml2 requests
     ];
 
   patchPhase = ''
@@ -39,7 +39,7 @@ python2Packages.buildPythonApplication rec {
   '';
 
   postConfigure = ''
-    ${python2Packages.python.interpreter} setup.py configure --prefix=$out
+    ${python3Packages.python.interpreter} setup.py configure --prefix=$out
   '';
 
   postInstall = ''

From 155595b0c75d0c5b054f0aec4548061798c9beca Mon Sep 17 00:00:00 2001
From: Gabriel Ebner <gebner@gebner.org>
Date: Wed, 7 Nov 2018 22:33:25 +0100
Subject: [PATCH 0657/1129] eprover: 2.1 -> 2.2

---
 pkgs/applications/science/logic/eprover/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/science/logic/eprover/default.nix b/pkgs/applications/science/logic/eprover/default.nix
index 0e978f2d5c9d..4d8e7b17b2bc 100644
--- a/pkgs/applications/science/logic/eprover/default.nix
+++ b/pkgs/applications/science/logic/eprover/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "eprover-${version}";
-  version = "2.1";
+  version = "2.2";
 
   src = fetchurl {
     url = "https://wwwlehre.dhbw-stuttgart.de/~sschulz/WORK/E_DOWNLOAD/V_${version}/E.tgz";
-    sha256 = "1gh99ajmza33f54idhqkdqxp5zh2k06jsf45drihnrzydlqv1n7l";
+    sha256 = "08ihpwgkz0l7skr42iw8lm202kqr51i792bs61qsbnk9gsjlab1c";
   };
 
   buildInputs = [ which ];

From d21a93557b30ba201d2e7bbe907696c6ba51795f Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Wed, 7 Nov 2018 16:35:21 -0500
Subject: [PATCH 0658/1129] lollypop-portal: drop

No longer needed since lollypop 0.9.600.
---
 pkgs/misc/lollypop-portal/default.nix | 61 ---------------------------
 pkgs/top-level/all-packages.nix       |  2 -
 2 files changed, 63 deletions(-)
 delete mode 100644 pkgs/misc/lollypop-portal/default.nix

diff --git a/pkgs/misc/lollypop-portal/default.nix b/pkgs/misc/lollypop-portal/default.nix
deleted file mode 100644
index dfcdebace3b0..000000000000
--- a/pkgs/misc/lollypop-portal/default.nix
+++ /dev/null
@@ -1,61 +0,0 @@
-{ stdenv, fetchFromGitLab, meson, ninja, pkgconfig
-, python3, gnome3, gst_all_1, gtk3, libnotify
-, kid3, easytag, gobjectIntrospection, wrapGAppsHook }:
-
-python3.pkgs.buildPythonApplication rec {
-  name = "lollypop-portal-${version}";
-  version = "0.9.7";
-
-  format = "other";
-  doCheck = false;
-
-  src = fetchFromGitLab {
-     domain = "gitlab.gnome.org";
-     owner = "gnumdk";
-     repo = name;
-     rev = version;
-     sha256 = "0rn5xmh6391i9l69y613pjad3pzdilskr2xjfcir4vpk8wprvph3";
-  };
-
-  nativeBuildInputs = [
-    gobjectIntrospection
-    meson
-    ninja
-    pkgconfig
-    wrapGAppsHook
-  ];
-
-  buildInputs = [
-    gnome3.gnome-settings-daemon
-    gnome3.libsecret
-    gnome3.totem-pl-parser
-    gst_all_1.gst-plugins-base
-    gst_all_1.gstreamer
-    gtk3
-    libnotify
-    python3
-  ];
-
-  pythonPath = with python3.pkgs; [
-    pycairo
-    pydbus
-    pygobject3
-  ];
-
-  preFixup = ''
-    buildPythonPath "$out/libexec/lollypop-portal $pythonPath"
-    patchPythonScript "$out/libexec/lollypop-portal"
-
-    gappsWrapperArgs+=(
-      --prefix PATH : "${stdenv.lib.makeBinPath [ easytag kid3 ]}"
-    )
-  '';
-
-  meta = with stdenv.lib; {
-    description = "DBus Service for Lollypop";
-    homepage = https://gitlab.gnome.org/gnumdk/lollypop-portal;
-    license = licenses.gpl3Plus;
-    maintainers = with maintainers; [ worldofpeace ];
-    platforms = platforms.linux;
-  };
-}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 91e78f8d28ea..53cafe63f8c3 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -22049,8 +22049,6 @@ with pkgs;
     lilypond = lilypond-unstable;
   };
 
-  lollypop-portal = callPackage ../misc/lollypop-portal { };
-
   openlilylib-fonts = callPackage ../misc/lilypond/fonts.nix { };
 
   mailcore2 = callPackage ../development/libraries/mailcore2 {

From 0f9a1dc25e3b870df3f1e3cc2cd930f1562f6c48 Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Wed, 7 Nov 2018 16:39:52 -0500
Subject: [PATCH 0659/1129] lollypop: 0.9.610 -> 0.9.611

---
 pkgs/applications/audio/lollypop/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/audio/lollypop/default.nix b/pkgs/applications/audio/lollypop/default.nix
index 8df2be1a0391..f68d93fa69d4 100644
--- a/pkgs/applications/audio/lollypop/default.nix
+++ b/pkgs/applications/audio/lollypop/default.nix
@@ -4,7 +4,7 @@
 , gobjectIntrospection, wrapGAppsHook }:
 
 python3.pkgs.buildPythonApplication rec  {
-  version = "0.9.610";
+  version = "0.9.611";
   name = "lollypop-${version}";
 
   format = "other";
@@ -14,7 +14,7 @@ python3.pkgs.buildPythonApplication rec  {
     url = "https://gitlab.gnome.org/World/lollypop";
     rev = "refs/tags/${version}";
     fetchSubmodules = true;
-    sha256 = "0nn4cjw0c2ysd3y2a7l08ybcd21v993wsz99f7w0881jhws3q5p4";
+    sha256 = "1k78a26sld0xd14c9hr4qv8c7qaq1m8zqk1mzrh4pl7ysqqg9p20";
   };
 
   nativeBuildInputs = with python3.pkgs; [

From 913a6510ed3a2a5772403d1301a830e431985e7b Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Wed, 7 Nov 2018 17:05:19 -0500
Subject: [PATCH 0660/1129] libaccounts-glib: 1.23 -> 1.24

- Switched to the Meson Build System
---
 .../libraries/libaccounts-glib/default.nix    | 49 +++++++++++++------
 .../libaccounts-glib/py-override.patch        | 38 ++++++++++++++
 2 files changed, 72 insertions(+), 15 deletions(-)
 create mode 100644 pkgs/development/libraries/libaccounts-glib/py-override.patch

diff --git a/pkgs/development/libraries/libaccounts-glib/default.nix b/pkgs/development/libraries/libaccounts-glib/default.nix
index 16e9f213ed48..e8e23ed5ffbb 100644
--- a/pkgs/development/libraries/libaccounts-glib/default.nix
+++ b/pkgs/development/libraries/libaccounts-glib/default.nix
@@ -1,29 +1,48 @@
-{ stdenv, fetchFromGitLab, autoconf, automake, glib
-, gtk-doc, libtool, libxml2, libxslt, pkgconfig, sqlite }:
+{ stdenv, fetchFromGitLab, meson, ninja, glib, check, python3, vala, gtk-doc, glibcLocales
+, libxml2, libxslt, pkgconfig, sqlite, docbook_xsl, docbook_xml_dtd_43, gobjectIntrospection }:
 
-let version = "1.23"; in
 stdenv.mkDerivation rec {
   name = "libaccounts-glib-${version}";
+  version = "1.24";
+
+  outputs = [ "out" "dev" "devdoc" "py" ];
 
   src = fetchFromGitLab {
-    sha256 = "11cvl3ch0y93756k90mw1swqv0ylr8qgalmvcn5yari8z4sg6cgg";
-    rev = "VERSION_${version}";
-    repo = "libaccounts-glib";
     owner = "accounts-sso";
+    repo = "libaccounts-glib";
+    rev = version;
+    sha256 = "0y8smg1rd279lrr9ad8b499i8pbkajmwd4xn41rdh9h93hs9apn7";
   };
 
-  buildInputs = [ glib libxml2 libxslt sqlite ];
-  nativeBuildInputs = [ autoconf automake gtk-doc libtool pkgconfig ];
+  # See: https://gitlab.com/accounts-sso/libaccounts-glib/merge_requests/22
+  patches = [ ./py-override.patch ];
 
-  postPatch = ''
-    NOCONFIGURE=1 ./autogen.sh
-  '';
+  nativeBuildInputs = [ 
+    check
+    docbook_xml_dtd_43
+    docbook_xsl
+    glibcLocales
+    gobjectIntrospection
+    gtk-doc
+    meson
+    ninja
+    pkgconfig
+    vala
+  ];
 
-  configurePhase = ''
-    HAVE_GCOV_FALSE="#" ./configure $configureFlags --prefix=$out
-  '';
+  buildInputs = [
+    glib
+    libxml2
+    libxslt
+    python3.pkgs.pygobject3
+    sqlite
+  ];
 
-  NIX_CFLAGS_COMPILE = "-Wno-error=deprecated-declarations"; # since glib-2.46
+  LC_ALL = "en_US.UTF-8";
+
+  mesonFlags = [
+    "-Dpy-overrides-dir=${placeholder ''py''}/${python3.sitePackages}/gi/overrides"
+  ];
 
   meta = with stdenv.lib; {
     description = "Library for managing accounts which can be used from GLib applications";
diff --git a/pkgs/development/libraries/libaccounts-glib/py-override.patch b/pkgs/development/libraries/libaccounts-glib/py-override.patch
new file mode 100644
index 000000000000..4179f4fa0af0
--- /dev/null
+++ b/pkgs/development/libraries/libaccounts-glib/py-override.patch
@@ -0,0 +1,38 @@
+diff --git a/libaccounts-glib/pygobject/meson.build b/libaccounts-glib/pygobject/meson.build
+index fa1f4a0..588c4ce 100644
+--- a/libaccounts-glib/pygobject/meson.build
++++ b/libaccounts-glib/pygobject/meson.build
+@@ -1,11 +1,19 @@
+-python3 = import('python3')
+-python_exec = python3.find_python()
+-python_exec_result = run_command(python_exec, ['-c', 'import gi; from os.path import abspath; print(abspath(gi._overridesdir))'])
++py_override = get_option('py-overrides-dir')
+ 
+-if python_exec_result.returncode() != 0
+-    error('Failed to retreive the python GObject override directory')
++if py_override == ''
++    python3 = import('python3')
++    python_exec = python3.find_python()
++    
++    python_exec_result = run_command(python_exec, ['-c', 'import gi; from os.path import abspath; print(abspath(gi._overridesdir))'])
++
++    if python_exec_result.returncode() != 0
++        error('Failed to retreive the python GObject override directory')
++    endif
++
++    py_override = python_exec_result.stdout().strip()
+ endif
+ 
+-install_data('Accounts.py',
+-    install_dir: join_paths(python_exec_result.stdout().strip())
++install_data(
++    'Accounts.py',
++    install_dir: py_override
+ )
+diff --git a/meson_options.txt  b/meson_options.txt 
+new file mode 100644
+index 0000000..2c33804
+--- /dev/null
++++ b/meson_options.txt 	
+@@ -0,0 +1 @@
++option('py-overrides-dir', type : 'string', value : '', description: 'Path to pygobject overrides directory')

From c60816c5232de8c9f4232eba2efc7dd27742e381 Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Wed, 7 Nov 2018 19:33:15 +0100
Subject: [PATCH 0661/1129] emacsMacport: add cf-private

Also remove incorrect emacs25Macport alias.

    Undefined symbols for architecture x86_64:
      "_CFNotificationCenterAddObserver", referenced from:
          _mac_term_init in macterm.o
          _macfont_copy_available_families_cache in macfont.o
      "_CFNotificationCenterGetDistributedCenter", referenced from:
          _mac_term_init in macterm.o
      "_CFNotificationCenterGetLocalCenter", referenced from:
          _macfont_copy_available_families_cache in macfont.o
      "_CFURLCopyResourcePropertyForKey", referenced from:
          _Fmac_file_alias_p in mac.o
      "_CFURLCreateBookmarkDataFromFile", referenced from:
          _Fmac_file_alias_p in mac.o
      "_CFURLCreateByResolvingBookmarkData", referenced from:
          _Fmac_file_alias_p in mac.o
      "_CFURLResourceIsReachable", referenced from:
          _mac_update_title_bar in macfns.o
          _mac_input_source_properties in macfns.o
      "_NSDefaultRunLoopMode", referenced from:
          -[NSApplication(Emacs) runTemporarilyWithBlock:] in macappkit.o
          ___57-[EmacsController handleQueuedNSEventsWithHoldingQuitIn:]_block_invoke in macappkit.o
          _mac_run_loop_run_once in macappkit.o
          ___mac_run_loop_run_once_block_invoke in macappkit.o
          ___37-[EmacsController(Menu) trackMenuBar]_block_invoke in macappkit.o
          ___create_and_show_dialog_block_invoke.2445 in macappkit.o
          ___mac_select_block_invoke in macappkit.o
          ...
      "_NSURLAttributeModificationDateKey", referenced from:
          _mac_document_create_with_url in macappkit.o
      "_OBJC_CLASS_$_NSArray", referenced from:
          objc-class-ref in macappkit.o
      "_OBJC_CLASS_$_NSData", referenced from:
          l_OBJC_$_CATEGORY_NSData_$_Emacs in macappkit.o
          objc-class-ref in macappkit.o
      "_OBJC_CLASS_$_NSDate", referenced from:
          objc-class-ref in macappkit.o
      "_OBJC_CLASS_$_NSDictionary", referenced from:
          objc-class-ref in macappkit.o
      "_OBJC_CLASS_$_NSMethodSignature", referenced from:
          l_OBJC_$_CATEGORY_NSMethodSignature_$_Emacs in macappkit.o
          objc-class-ref in macappkit.o
      "_OBJC_CLASS_$_NSMutableArray", referenced from:
          l_OBJC_$_CATEGORY_NSMutableArray_$_Emacs in macappkit.o
          objc-class-ref in macappkit.o
      "_OBJC_CLASS_$_NSMutableData", referenced from:
          objc-class-ref in macappkit.o
      "_OBJC_CLASS_$_NSMutableDictionary", referenced from:
          objc-class-ref in macappkit.o
      "_OBJC_CLASS_$_NSMutableSet", referenced from:
          objc-class-ref in macappkit.o
      "_OBJC_CLASS_$_NSNull", referenced from:
          objc-class-ref in macappkit.o
      "_OBJC_CLASS_$_NSRunLoop", referenced from:
          objc-class-ref in macappkit.o
      "_OBJC_CLASS_$_NSSet", referenced from:
          objc-class-ref in macappkit.o
      "_OBJC_CLASS_$_NSTimer", referenced from:
          objc-class-ref in macappkit.o
      "_OBJC_CLASS_$_NSURL", referenced from:
          objc-class-ref in macappkit.o
      "_OBJC_CLASS_$_NSUserDefaults", referenced from:
          objc-class-ref in macappkit.o
      "_OBJC_EHTYPE_$_NSException", referenced from:
          GCC_except_table81 in macappkit.o
          GCC_except_table810 in macappkit.o
      "_kCFURLIsAliasFileKey", referenced from:
          _Fmac_file_alias_p in mac.o
      "_kCFURLIsSymbolicLinkKey", referenced from:
          _Fmac_file_alias_p in mac.o
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/applications/editors/emacs/macport.nix | 4 +++-
 pkgs/top-level/aliases.nix                  | 1 -
 pkgs/top-level/all-packages.nix             | 4 ++--
 3 files changed, 5 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/editors/emacs/macport.nix b/pkgs/applications/editors/emacs/macport.nix
index 0876a71cbf73..7070ce597388 100644
--- a/pkgs/applications/editors/emacs/macport.nix
+++ b/pkgs/applications/editors/emacs/macport.nix
@@ -1,5 +1,5 @@
 { stdenv, fetchurl, ncurses, pkgconfig, texinfo, libxml2, gnutls, gettext, autoconf, automake
-, AppKit, Carbon, Cocoa, IOKit, OSAKit, Quartz, QuartzCore, WebKit
+, cf-private, AppKit, Carbon, Cocoa, IOKit, OSAKit, Quartz, QuartzCore, WebKit
 , ImageCaptureCore, GSS, ImageIO # These may be optional
 }:
 
@@ -33,6 +33,8 @@ stdenv.mkDerivation rec {
   buildInputs = [ ncurses libxml2 gnutls texinfo gettext
     AppKit Carbon Cocoa IOKit OSAKit Quartz QuartzCore WebKit
     ImageCaptureCore GSS ImageIO   # may be optional
+    # Needed for CFNotificationCenterAddObserver symbols.
+    cf-private
   ];
 
   postUnpack = ''
diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix
index 8f5e866ede54..81544236136d 100644
--- a/pkgs/top-level/aliases.nix
+++ b/pkgs/top-level/aliases.nix
@@ -85,7 +85,6 @@ mapAliases ({
   docbook_xml_xslt = docbook_xsl; # added 2018-04-25
   double_conversion = double-conversion; # 2017-11-22
   dwarf_fortress = dwarf-fortress; # added 2016-01-23
-  emacs25Macport_25_1 = emacs25Macport; # added 2018-04-25
   emacsMelpa = emacs25PackagesNg; # for backward compatibility
   emacsPackagesGen = emacsPackagesFor; # added 2018-08-18
   emacsPackagesNgGen = emacsPackagesNgFor; # added 2018-08-18
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 18e5201be6bb..72a0dc8956be 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -16382,8 +16382,8 @@ with pkgs;
     withGTK3 = false;
   }));
 
-  emacsMacport = emacs25Macport;
-  emacs25Macport = callPackage ../applications/editors/emacs/macport.nix {
+  emacsMacport = callPackage ../applications/editors/emacs/macport.nix {
+    inherit (darwin) cf-private;
     inherit (darwin.apple_sdk.frameworks)
       AppKit Carbon Cocoa IOKit OSAKit Quartz QuartzCore WebKit
       ImageCaptureCore GSS ImageIO;

From 78623f492c3587aacc8100805a5b4d3487d5f140 Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Wed, 7 Nov 2018 19:50:54 +0100
Subject: [PATCH 0662/1129] fltk: add cf-private on darwin

    Undefined symbols for architecture x86_64:
      "_NSDefaultRunLoopMode", referenced from:
          fl_open_display() in Fl_cocoa.o
          fl_ready() in Fl_cocoa.o
          fl_wait(double) in Fl_cocoa.o
      "_OBJC_CLASS_$_NSArray", referenced from:
          objc-class-ref in Fl_cocoa.o
      "_OBJC_CLASS_$_NSData", referenced from:
          objc-class-ref in Fl_Sys_Menu_Bar.o
      "_OBJC_CLASS_$_NSDate", referenced from:
          objc-class-ref in Fl_cocoa.o
      "_OBJC_CLASS_$_NSDictionary", referenced from:
          objc-class-ref in Fl_cocoa.o
      "_OBJC_CLASS_$_NSURL", referenced from:
          objc-class-ref in Fl_Native_File_Chooser_MAC.o
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/development/libraries/fltk/default.nix | 4 ++--
 pkgs/top-level/all-packages.nix             | 5 ++++-
 2 files changed, 6 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/libraries/fltk/default.nix b/pkgs/development/libraries/fltk/default.nix
index 405d80031e37..b1c798476ead 100644
--- a/pkgs/development/libraries/fltk/default.nix
+++ b/pkgs/development/libraries/fltk/default.nix
@@ -1,6 +1,6 @@
 { stdenv, fetchurl, pkgconfig, xlibsWrapper, inputproto, libXi
 , freeglut, libGLU_combined, libjpeg, zlib, libXft, libpng
-, darwin, libtiff, freetype
+, libtiff, freetype, cf-private, Cocoa, AGL, GLUT
 }:
 
 let
@@ -35,7 +35,7 @@ in stdenv.mkDerivation {
 
   propagatedBuildInputs = [ inputproto ]
     ++ (if stdenv.isDarwin
-        then (with darwin.apple_sdk.frameworks; [Cocoa AGL GLUT freetype libtiff])
+        then [ Cocoa AGL GLUT freetype libtiff cf-private  /* Needed for NSDefaultRunLoopMode */ ]
         else [ xlibsWrapper libXi freeglut ]);
 
   enableParallelBuilding = true;
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 72a0dc8956be..84ca9cd8161e 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -9574,7 +9574,10 @@ with pkgs;
 
   flite = callPackage ../development/libraries/flite { };
 
-  fltk13 = callPackage ../development/libraries/fltk { };
+  fltk13 = callPackage ../development/libraries/fltk {
+    inherit (darwin) cf-private;
+    inherit (darwin.apple_sdk.frameworks) Cocoa AGL GLUT;
+  };
   fltk = self.fltk13;
 
   flyway = callPackage ../development/tools/flyway { };

From 388a868d6db2e5fb7dac0cf7a7c22265262e32f3 Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Wed, 7 Nov 2018 19:54:16 +0100
Subject: [PATCH 0663/1129] glfw: add cf-private on darwin

    Undefined symbols for architecture x86_64:
      "_NSDefaultRunLoopMode", referenced from:
          __glfwPlatformPollEvents in cocoa_window.m.o
          __glfwPlatformWaitEvents in cocoa_window.m.o
          __glfwPlatformWaitEventsTimeout in cocoa_window.m.o
      "_OBJC_CLASS_$_NSArray", referenced from:
          objc-class-ref in cocoa_window.m.o
      "_OBJC_CLASS_$_NSDate", referenced from:
          objc-class-ref in cocoa_window.m.o
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/development/libraries/glfw/3.x.nix | 8 ++++++--
 pkgs/top-level/all-packages.nix         | 5 ++++-
 2 files changed, 10 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/libraries/glfw/3.x.nix b/pkgs/development/libraries/glfw/3.x.nix
index 8d4d4d10038a..9cbc60dcef5a 100644
--- a/pkgs/development/libraries/glfw/3.x.nix
+++ b/pkgs/development/libraries/glfw/3.x.nix
@@ -1,5 +1,5 @@
 { stdenv, lib, fetchFromGitHub, cmake, libGL, libXrandr, libXinerama, libXcursor, libX11
-, darwin, fixDarwinDylibNames
+, cf-private, Cocoa, Kernel, fixDarwinDylibNames
 }:
 
 stdenv.mkDerivation rec {
@@ -21,7 +21,11 @@ stdenv.mkDerivation rec {
 
   buildInputs = [
     libX11 libXrandr libXinerama libXcursor
-  ] ++ lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ Cocoa Kernel fixDarwinDylibNames ]);
+  ] ++ lib.optionals stdenv.isDarwin [
+    Cocoa Kernel fixDarwinDylibNames
+    # Needed for NSDefaultRunLoopMode symbols.
+    cf-private
+  ];
 
   cmakeFlags = [ "-DBUILD_SHARED_LIBS=ON" ];
 
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 84ca9cd8161e..0ec669de21ef 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -9731,7 +9731,10 @@ with pkgs;
 
   glfw = glfw3;
   glfw2 = callPackage ../development/libraries/glfw/2.x.nix { };
-  glfw3 = callPackage ../development/libraries/glfw/3.x.nix { };
+  glfw3 = callPackage ../development/libraries/glfw/3.x.nix {
+    inherit (darwin) cf-private;
+    inherit (darwin.apple_sdk.frameworks) Cocoa Kernel;
+  };
 
   glibc = callPackage ../development/libraries/glibc {
     installLocales = config.glibc.locales or false;

From be9fc0d669641c7e3747c37b8419beb93fa5bc0e Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Wed, 7 Nov 2018 19:56:56 +0100
Subject: [PATCH 0664/1129] keybase: add cf-private on darwin

    Undefined symbols for architecture x86_64:
      "_OBJC_CLASS_$_NSData", referenced from:
          objc-class-ref in _x002.o
      "_OBJC_CLASS_$_NSDictionary", referenced from:
          objc-class-ref in _x002.o
      "_OBJC_CLASS_$_NSURL", referenced from:
          objc-class-ref in _x002.o
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/tools/security/keybase/default.nix | 13 +++++++++----
 pkgs/top-level/all-packages.nix         |  1 +
 2 files changed, 10 insertions(+), 4 deletions(-)

diff --git a/pkgs/tools/security/keybase/default.nix b/pkgs/tools/security/keybase/default.nix
index 555244bc38cd..720c382ebd67 100644
--- a/pkgs/tools/security/keybase/default.nix
+++ b/pkgs/tools/security/keybase/default.nix
@@ -1,6 +1,7 @@
-{ stdenv, lib, buildGoPackage, fetchFromGitHub
-, AVFoundation ? null, AudioToolbox ? null, ImageIO ? null, CoreMedia ? null
-, Foundation ? null, CoreGraphics ? null, MediaToolbox ? null }:
+{ stdenv, lib, buildGoPackage, fetchFromGitHub, cf-private
+, AVFoundation, AudioToolbox, ImageIO, CoreMedia
+, Foundation, CoreGraphics, MediaToolbox
+}:
 
 buildGoPackage rec {
   name = "keybase-${version}";
@@ -18,7 +19,11 @@ buildGoPackage rec {
     sha256 = "1sw6v3vf544vp8grw8p287cx078mr9v0v1wffcj6f9p9shlwj7ic";
   };
 
-  buildInputs = lib.optionals stdenv.isDarwin [ AVFoundation AudioToolbox ImageIO CoreMedia Foundation CoreGraphics MediaToolbox ];
+  buildInputs = lib.optionals stdenv.isDarwin [
+    AVFoundation AudioToolbox ImageIO CoreMedia Foundation CoreGraphics MediaToolbox
+    # Needed for OBJC_CLASS_$_NSData symbols.
+    cf-private
+  ];
   buildFlags = [ "-tags production" ];
 
   meta = with stdenv.lib; {
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 0ec669de21ef..537a1b8cdcf4 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -3594,6 +3594,7 @@ with pkgs;
   kexectools = callPackage ../os-specific/linux/kexectools { };
 
   keybase = callPackage ../tools/security/keybase {
+    inherit (darwin) cf-private;
     # Reasoning for the inherited apple_sdk.frameworks:
     # 1. specific compiler errors about: AVFoundation, AudioToolbox, MediaToolbox
     # 2. the rest are added from here: https://github.com/keybase/client/blob/68bb8c893c5214040d86ea36f2f86fbb7fac8d39/go/chat/attachments/preview_darwin.go#L7

From 0b45d5b8f9091ea599ed3a961e275c34a5533b07 Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Wed, 7 Nov 2018 20:01:58 +0100
Subject: [PATCH 0665/1129] libui: add cf-private on darwin

    Undefined symbols for architecture x86_64:
      "_NSDefaultRunLoopMode", referenced from:
          _uiMainStep in main.m.o
      "_OBJC_CLASS_$_NSDate", referenced from:
          objc-class-ref in main.m.o
      "_OBJC_CLASS_$_NSDictionary", referenced from:
          objc-class-ref in multilineentry.m.o
      "_OBJC_CLASS_$_NSMutableArray", referenced from:
          objc-class-ref in alloc.m.o
          objc-class-ref in box.m.o
          objc-class-ref in menu.m.o
          objc-class-ref in radiobuttons.m.o
          objc-class-ref in tab.m.o
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/development/libraries/libui/default.nix | 85 ++++++++++----------
 pkgs/top-level/all-packages.nix              |  5 +-
 2 files changed, 46 insertions(+), 44 deletions(-)

diff --git a/pkgs/development/libraries/libui/default.nix b/pkgs/development/libraries/libui/default.nix
index 150e299ac422..dcc406accbd7 100644
--- a/pkgs/development/libraries/libui/default.nix
+++ b/pkgs/development/libraries/libui/default.nix
@@ -1,54 +1,53 @@
-{ stdenv, fetchgit, cmake, pkgconfig, gtk3, darwin }:
+{ stdenv, fetchgit, cmake, pkgconfig, gtk3, cf-private, Cocoa }:
 
 let
   shortName = "libui";
   version   = "3.1a";
   backend   = if stdenv.isDarwin then "darwin" else "unix";
 in
-  stdenv.mkDerivation rec {
-    name = "${shortName}-${version}";
-    src  = fetchgit {
-      url    = "https://github.com/andlabs/libui.git";
-      rev    = "6ebdc96b93273c3cedf81159e7843025caa83058";
-      sha256 = "1lpbfa298c61aarlzgp7vghrmxg1274pzxh1j9isv8x758gk6mfn";
-    };
 
-    nativeBuildInputs = [ pkgconfig ];
-    buildInputs = [ cmake ] ++
-      (if backend == "darwin" then [darwin.apple_sdk.frameworks.Cocoa]
-       else if backend == "unix" then [gtk3]
-       else null);
+stdenv.mkDerivation rec {
+  name = "${shortName}-${version}";
+  src  = fetchgit {
+    url    = "https://github.com/andlabs/libui.git";
+    rev    = "6ebdc96b93273c3cedf81159e7843025caa83058";
+    sha256 = "1lpbfa298c61aarlzgp7vghrmxg1274pzxh1j9isv8x758gk6mfn";
+  };
 
-    preConfigure = stdenv.lib.optionalString stdenv.isDarwin ''
-      sed -i 's/set(CMAKE_OSX_DEPLOYMENT_TARGET "10.8")//' ./CMakeLists.txt
-    '';
+  nativeBuildInputs = [ cmake pkgconfig ];
+  buildInputs = stdenv.lib.optional stdenv.isLinux gtk3
+    ++ stdenv.lib.optionals stdenv.isDarwin [ Cocoa cf-private /* For NSDefaultRunLoopMode */ ];
 
-    installPhase = ''
-      mkdir -p $out/{include,lib}
-      mkdir -p $out/lib/pkgconfig
-    '' + stdenv.lib.optionalString stdenv.isLinux ''
-      mv ./out/${shortName}.so.0 $out/lib/
-      ln -s $out/lib/${shortName}.so.0 $out/lib/${shortName}.so
-    '' + stdenv.lib.optionalString stdenv.isDarwin ''
-      mv ./out/${shortName}.A.dylib $out/lib/
-      ln -s $out/lib/${shortName}.A.dylib $out/lib/${shortName}.dylib
-    '' + ''
-      cp $src/ui.h $out/include
-      cp $src/ui_${backend}.h $out/include
+  preConfigure = stdenv.lib.optionalString stdenv.isDarwin ''
+    sed -i 's/set(CMAKE_OSX_DEPLOYMENT_TARGET "10.8")//' ./CMakeLists.txt
+  '';
 
-      cp ${./libui.pc} $out/lib/pkgconfig/${shortName}.pc
-      substituteInPlace $out/lib/pkgconfig/${shortName}.pc \
-        --subst-var-by out $out \
-        --subst-var-by version "${version}"
-    '';
-    postInstall = stdenv.lib.optionalString stdenv.isDarwin ''
-      install_name_tool -id $out/lib/${shortName}.A.dylib $out/lib/${shortName}.A.dylib
-    '';
+  installPhase = ''
+    mkdir -p $out/{include,lib}
+    mkdir -p $out/lib/pkgconfig
+  '' + stdenv.lib.optionalString stdenv.isLinux ''
+    mv ./out/${shortName}.so.0 $out/lib/
+    ln -s $out/lib/${shortName}.so.0 $out/lib/${shortName}.so
+  '' + stdenv.lib.optionalString stdenv.isDarwin ''
+    mv ./out/${shortName}.A.dylib $out/lib/
+    ln -s $out/lib/${shortName}.A.dylib $out/lib/${shortName}.dylib
+  '' + ''
+    cp $src/ui.h $out/include
+    cp $src/ui_${backend}.h $out/include
 
-    meta = with stdenv.lib; {
-      homepage    = https://github.com/andlabs/libui;
-      description = "Simple and portable (but not inflexible) GUI library in C that uses the native GUI technologies of each platform it supports.";
-      license     = licenses.mit;
-      platforms   = platforms.unix;
-    };
-  }
+    cp ${./libui.pc} $out/lib/pkgconfig/${shortName}.pc
+    substituteInPlace $out/lib/pkgconfig/${shortName}.pc \
+      --subst-var-by out $out \
+      --subst-var-by version "${version}"
+  '';
+  postInstall = stdenv.lib.optionalString stdenv.isDarwin ''
+    install_name_tool -id $out/lib/${shortName}.A.dylib $out/lib/${shortName}.A.dylib
+  '';
+
+  meta = with stdenv.lib; {
+    homepage    = https://github.com/andlabs/libui;
+    description = "Simple and portable (but not inflexible) GUI library in C that uses the native GUI technologies of each platform it supports.";
+    license     = licenses.mit;
+    platforms   = platforms.unix;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 537a1b8cdcf4..d9f87c4d6f56 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -11174,7 +11174,10 @@ with pkgs;
 
   libuecc = callPackage ../development/libraries/libuecc { };
 
-  libui = callPackage ../development/libraries/libui { };
+  libui = callPackage ../development/libraries/libui {
+    inherit (darwin) cf-private;
+    inherit (darwin.apple_sdk.frameworks) Cocoa;
+  };
 
   libunistring = callPackage ../development/libraries/libunistring { };
 

From 33104363af240c6eef5297bd2b3f4648d5e09f3b Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Wed, 7 Nov 2018 20:23:49 +0100
Subject: [PATCH 0666/1129] noti: add cf-private on darwin

    Undefined symbols for architecture x86_64:
      "_OBJC_CLASS_$_NSDate", referenced from:
          objc-class-ref in _x002.o
      "_OBJC_CLASS_$_NSRunLoop", referenced from:
          objc-class-ref in _x002.o
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/tools/misc/noti/default.nix | 4 ++--
 pkgs/top-level/all-packages.nix  | 1 +
 2 files changed, 3 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/misc/noti/default.nix b/pkgs/tools/misc/noti/default.nix
index 23646abe7875..43165b4f54bb 100644
--- a/pkgs/tools/misc/noti/default.nix
+++ b/pkgs/tools/misc/noti/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, buildGoPackage, fetchFromGitHub, Cocoa }:
+{ stdenv, buildGoPackage, fetchFromGitHub, cf-private, Cocoa }:
 
 buildGoPackage rec {
   name = "noti-${version}";
@@ -11,7 +11,7 @@ buildGoPackage rec {
     sha256 = "1chsqfqk0pnhx5k2nr4c16cpb8m6zv69l1jvv4v4903zgfzcm823";
   };
 
-  buildInputs = stdenv.lib.optionals stdenv.isDarwin [ Cocoa ];
+  buildInputs = stdenv.lib.optionals stdenv.isDarwin [ Cocoa cf-private /* For OBJC_CLASS_$_NSDate */ ];
   # TODO: Remove this when we update apple_sdk
   NIX_CFLAGS_COMPILE = stdenv.lib.optionals stdenv.isDarwin [ "-fno-objc-arc" ];
 
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index d9f87c4d6f56..d4a54fca911b 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -1549,6 +1549,7 @@ with pkgs;
   noteshrink = callPackage ../tools/misc/noteshrink { };
 
   noti = callPackage ../tools/misc/noti {
+    inherit (darwin) cf-private;
     inherit (darwin.apple_sdk.frameworks) Cocoa;
   };
 

From 14e41fe461ae756a2e274d6dbf91ee9e58212fa6 Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Wed, 7 Nov 2018 20:28:27 +0100
Subject: [PATCH 0667/1129] opencv: add cf-private on darwin

    Undefined symbols for architecture x86_64:
      "_NSDefaultRunLoopMode", referenced from:
          _cvWaitKey in window_cocoa.mm.o
      "_OBJC_CLASS_$_NSDate", referenced from:
          objc-class-ref in window_cocoa.mm.o
          objc-class-ref in cap_qtkit.mm.o
      "_OBJC_CLASS_$_NSDictionary", referenced from:
          objc-class-ref in window_cocoa.mm.o
          objc-class-ref in cap_qtkit.mm.o
      "_OBJC_CLASS_$_NSMutableDictionary", referenced from:
          objc-class-ref in window_cocoa.mm.o
      "_OBJC_CLASS_$_NSRunLoop", referenced from:
          objc-class-ref in cap_qtkit.mm.o
      "_OBJC_CLASS_$_NSTimer", referenced from:
          objc-class-ref in cap_qtkit.mm.o
    ld: symbol(s) not found for architecture x86_64
---
 pkgs/development/libraries/opencv/default.nix | 4 ++--
 pkgs/top-level/all-packages.nix               | 2 ++
 2 files changed, 4 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/opencv/default.nix b/pkgs/development/libraries/opencv/default.nix
index 66a840fa2a9e..4532285e53dc 100644
--- a/pkgs/development/libraries/opencv/default.nix
+++ b/pkgs/development/libraries/opencv/default.nix
@@ -10,7 +10,7 @@
 , enableFfmpeg ? false, ffmpeg
 , enableGStreamer ? false, gst_all_1
 , enableEigen ? true, eigen
-, darwin
+, cf-private, Cocoa, QTKit
 }:
 
 let
@@ -54,7 +54,7 @@ stdenv.mkDerivation rec {
     ++ lib.optional enableFfmpeg ffmpeg
     ++ lib.optionals enableGStreamer (with gst_all_1; [ gstreamer gst-plugins-base ])
     ++ lib.optional enableEigen eigen
-    ++ lib.optionals stdenv.isDarwin (with darwin.apple_sdk.frameworks; [ Cocoa QTKit ])
+    ++ lib.optionals stdenv.isDarwin [ Cocoa QTKit cf-private /* For NSDefaultRunLoopMode */ ]
     ;
 
   propagatedBuildInputs = lib.optional enablePython pythonPackages.numpy;
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index d4a54fca911b..6cbc98dcd42c 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -11626,6 +11626,8 @@ with pkgs;
 
   opencv = callPackage ../development/libraries/opencv {
     ffmpeg = ffmpeg_2;
+    inherit (darwin) cf-private;
+    inherit (darwin.apple_sdk.frameworks) Cocoa QTKit;
   };
 
   opencv3 = callPackage ../development/libraries/opencv/3.x.nix {

From c1d9f57dccc01849b1827ee256aeba7ca6a424b7 Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Wed, 7 Nov 2018 19:53:40 -0500
Subject: [PATCH 0668/1129] gradle: 4.10 -> 4.10.2

---
 pkgs/development/tools/build-managers/gradle/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/tools/build-managers/gradle/default.nix b/pkgs/development/tools/build-managers/gradle/default.nix
index 566694e06b04..a369df68f050 100644
--- a/pkgs/development/tools/build-managers/gradle/default.nix
+++ b/pkgs/development/tools/build-managers/gradle/default.nix
@@ -52,12 +52,12 @@ rec {
   };
 
   gradle_latest = gradleGen rec {
-    name = "gradle-4.10";
+    name = "gradle-4.10.2";
     nativeVersion = "0.14";
 
     src = fetchurl {
       url = "http://services.gradle.org/distributions/${name}-bin.zip";
-      sha256 = "064zyli00cj3clbn631kivg5izhkyyf31f6x65a2rqac229gv314";
+      sha256 = "0a9s2iisivgaapsz4vq1l8fa2w0wnlq0cj67yv5a0rybnahnv75l";
     };
   };
 

From 619c39e5c951b0ac10ae9c967a7986fb486df39a Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Wed, 7 Nov 2018 19:56:43 -0500
Subject: [PATCH 0669/1129] kotlin: 1.2.71 -> 1.3.0

---
 pkgs/development/compilers/kotlin/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/compilers/kotlin/default.nix b/pkgs/development/compilers/kotlin/default.nix
index 7b88efd1e616..c427ec75cb37 100644
--- a/pkgs/development/compilers/kotlin/default.nix
+++ b/pkgs/development/compilers/kotlin/default.nix
@@ -1,14 +1,14 @@
 { stdenv, fetchurl, makeWrapper, jre, unzip }:
 
 let
-  version = "1.2.71";
+  version = "1.3.0";
 in stdenv.mkDerivation rec {
   inherit version;
   name = "kotlin-${version}";
 
   src = fetchurl {
     url = "https://github.com/JetBrains/kotlin/releases/download/v${version}/kotlin-compiler-${version}.zip";
-    sha256 = "0yzanv2jkjx3vfixzvjsihfi00khs7zr47y01cil8bylzvyr50p4";
+    sha256 = "14i5qmni1dzfamab6y659b5nvgp99m1abx71i83zcbfi9nw1r1gz";
   };
 
   propagatedBuildInputs = [ jre ] ;

From 0cd1e6732d478c22ac47c875c2f46dca83872775 Mon Sep 17 00:00:00 2001
From: lassulus <lassulus@lassul.us>
Date: Wed, 7 Nov 2018 20:56:32 +0100
Subject: [PATCH 0670/1129] dwarf-fortress: fix theme override

---
 pkgs/games/dwarf-fortress/wrapper/default.nix | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/pkgs/games/dwarf-fortress/wrapper/default.nix b/pkgs/games/dwarf-fortress/wrapper/default.nix
index c1e81bf2b3ac..8672de3af84f 100644
--- a/pkgs/games/dwarf-fortress/wrapper/default.nix
+++ b/pkgs/games/dwarf-fortress/wrapper/default.nix
@@ -35,8 +35,11 @@ let
 
   fixup = lib.singleton (runCommand "fixup" {} (''
     mkdir -p $out/data/init
+  '' + (if (theme != null) then ''
+    cp ${lib.head themePkg}/data/init/init.txt $out/data/init/init.txt
+  '' else ''
     cp ${dwarf-fortress}/data/init/init.txt $out/data/init/init.txt
-  '' + lib.optionalString enableDFHack ''
+  '') + lib.optionalString enableDFHack ''
     mkdir -p $out/hack
 
     # Patch the MD5

From dd46b1adb6da5e98fa5850cef6a07c29e3659fa0 Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Wed, 7 Nov 2018 19:59:09 -0500
Subject: [PATCH 0671/1129] ammonite: 1.2.1 -> 1.4.2

---
 pkgs/development/tools/ammonite/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/tools/ammonite/default.nix b/pkgs/development/tools/ammonite/default.nix
index 7544958cb314..ab1f6c7706fe 100644
--- a/pkgs/development/tools/ammonite/default.nix
+++ b/pkgs/development/tools/ammonite/default.nix
@@ -5,12 +5,12 @@
 with stdenv.lib;
 stdenv.mkDerivation rec {
   name = "ammonite-${version}";
-  version = "1.2.1";
+  version = "1.4.2";
   scalaVersion = "2.12";
 
   src = fetchurl {
     url = "https://github.com/lihaoyi/Ammonite/releases/download/${version}/${scalaVersion}-${version}";
-    sha256 = "096xychdq1pmyjfv4cv4pvm29dk539rxpq3iaz9rpznp01af4mjf";
+    sha256 = "10m6nnvrwzkbyhiq77wlqgzvqfqmn16y4sp983dyihjljxalygax";
   };
 
   propagatedBuildInputs = [ jre ] ;

From 072b2b86b09623982e25e714d487cf50654f723e Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Wed, 7 Nov 2018 20:04:21 -0500
Subject: [PATCH 0672/1129] oh-my-zsh: 2018-09-19 -> 2018-11-02

---
 pkgs/shells/zsh/oh-my-zsh/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/shells/zsh/oh-my-zsh/default.nix b/pkgs/shells/zsh/oh-my-zsh/default.nix
index d4082465b19e..552b9b6d7c18 100644
--- a/pkgs/shells/zsh/oh-my-zsh/default.nix
+++ b/pkgs/shells/zsh/oh-my-zsh/default.nix
@@ -4,13 +4,13 @@
 { stdenv, fetchgit }:
 
 stdenv.mkDerivation rec {
-  version = "2018-09-14";
+  version = "2018-11-02";
   name = "oh-my-zsh-${version}";
 
   src = fetchgit {
     url = "https://github.com/robbyrussell/oh-my-zsh";
-    rev = "489be2452a6410a2c7837910c4cd3c0ed47a7481";
-    sha256 = "05svfd2q4w4hnd9rsh57z7rsc50lavg3lqm3nmm6dqak1nnrkhbz";
+    rev = "05b617066ba5a37ef0c533385efd6e232a387b8f";
+    sha256 = "1pcb3ca5z3nywwnlhhjl4709k69lk4p0kd36l00q37j8p0vf6zr4";
   };
 
   pathsToLink = [ "/share/oh-my-zsh" ];

From 451126ea6e27a73d102a24a1a3196d5c25a70f4e Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Wed, 7 Nov 2018 20:22:03 -0500
Subject: [PATCH 0673/1129] subversion: init 1.11.0

---
 pkgs/applications/version-management/subversion/default.nix | 6 ++++++
 pkgs/top-level/all-packages.nix                             | 4 ++--
 2 files changed, 8 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/version-management/subversion/default.nix b/pkgs/applications/version-management/subversion/default.nix
index 2a77e1395b46..797c1cd5263d 100644
--- a/pkgs/applications/version-management/subversion/default.nix
+++ b/pkgs/applications/version-management/subversion/default.nix
@@ -125,4 +125,10 @@ in {
     sha256 = "1z6r3n91a4znsh68rl3jisfr7k4faymhbpalmmvsmvsap34al3cz";
     extraBuildInputs = [ lz4 utf8proc ];
   };
+
+  subversion_1_11 = common {
+    version = "1.11.0";
+    sha256 = "0miyz3xsxxp56iczxv6yqd8p06av3vxpb5nasyg2xb3ln1247i47";
+    extraBuildInputs = [ lz4 utf8proc ];
+  };
 }
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 841153729cf4..611f53c950a0 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -19137,9 +19137,9 @@ with pkgs;
       saslSupport = false;
       sasl = cyrus_sasl;
     })
-    subversion18 subversion19 subversion_1_10;
+    subversion18 subversion19 subversion_1_10 subversion_1_11;
 
-  subversion = subversion_1_10;
+  subversion = subversion_1_11;
 
   subversionClient = appendToName "client" (pkgs.subversion.override {
     bdbSupport = false;

From 1cfc2427c8b57a4dee3d1a4b58fcdd22416e9502 Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Wed, 7 Nov 2018 20:25:57 -0500
Subject: [PATCH 0674/1129] subversion: 1.9.7 -> 1.9.9

---
 pkgs/applications/version-management/subversion/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/version-management/subversion/default.nix b/pkgs/applications/version-management/subversion/default.nix
index 797c1cd5263d..dfcc28142ac7 100644
--- a/pkgs/applications/version-management/subversion/default.nix
+++ b/pkgs/applications/version-management/subversion/default.nix
@@ -116,8 +116,8 @@ in {
   };
 
   subversion19 = common {
-    version = "1.9.7";
-    sha256 = "08qn94zaqcclam2spb4h742lvhxw8w5bnrlya0fm0bp17hriicf3";
+    version = "1.9.9";
+    sha256 = "1ll13ychbkp367c7zsrrpda5nygkryma5k18qfr8wbaq7dbvxzcd";
   };
 
   subversion_1_10 = common {

From 997fc15e998eeb6a3de1c4bc3f5dc3a9ae3c5ed7 Mon Sep 17 00:00:00 2001
From: Matt McHenry <github@matt.mchenryfamily.org>
Date: Wed, 7 Nov 2018 21:54:10 -0500
Subject: [PATCH 0675/1129] client-ip-echo: 0.1.0.1 -> 0.1.0.3

---
 pkgs/servers/misc/client-ip-echo/client-ip-echo.nix | 7 +++----
 1 file changed, 3 insertions(+), 4 deletions(-)

diff --git a/pkgs/servers/misc/client-ip-echo/client-ip-echo.nix b/pkgs/servers/misc/client-ip-echo/client-ip-echo.nix
index 92bbc309ed3d..1f5c6a20843a 100644
--- a/pkgs/servers/misc/client-ip-echo/client-ip-echo.nix
+++ b/pkgs/servers/misc/client-ip-echo/client-ip-echo.nix
@@ -1,17 +1,16 @@
 { mkDerivation, fetchFromGitHub, base, bytestring, network, stdenv }:
 mkDerivation {
   pname = "client-ip-echo";
-  version = "0.1.0.1";
+  version = "0.1.0.3";
   src = fetchFromGitHub {
     owner = "jerith666";
     repo = "client-ip-echo";
-    rev = "f6e3e115a1e61a387cf79956ead36d7ac25a2901";
-    sha256 = "0irxcaiwxxn4ggd2dbya1mvpnyfanx0x06whp8ccrha141cafwqp";
+    rev = "8d1a79d94a962b3266c1db51200913c2295d8922";
+    sha256 = "1g1s7i68n3906m3yjfygw96j64n8nh88lmf77blnz0xzrq4y3bgf";
   };
   isLibrary = false;
   isExecutable = true;
   executableHaskellDepends = [ base bytestring network ];
   description = "accepts TCP connections and echoes the client's IP address back to it";
   license = stdenv.lib.licenses.lgpl3;
-  broken = true; # 2018-04-10
 }

From 2403464720f641bd6b3ab92a9c0386d36d0a9e83 Mon Sep 17 00:00:00 2001
From: Jan Malakhovski <oxij@oxij.org>
Date: Wed, 7 Nov 2018 09:07:38 +0000
Subject: [PATCH 0676/1129] nixos/release.nix: generalize `modules` copy-paste
 into `makeModules`

---
 nixos/release.nix | 13 ++++++++-----
 1 file changed, 8 insertions(+), 5 deletions(-)

diff --git a/nixos/release.nix b/nixos/release.nix
index 4647f28be186..e18b6ad310fd 100644
--- a/nixos/release.nix
+++ b/nixos/release.nix
@@ -45,6 +45,7 @@ let
       system.nixos.revision = nixpkgs.rev or nixpkgs.shortRev;
     };
 
+  makeModules = module: rest: [ configuration versionModule module rest ];
 
   makeIso =
     { module, type, system, ... }:
@@ -53,7 +54,9 @@ let
 
     hydraJob ((import lib/eval-config.nix {
       inherit system;
-      modules = [ configuration module versionModule { isoImage.isoBaseName = "nixos-${type}"; } ];
+      modules = makeModules module {
+        isoImage.isoBaseName = "nixos-${type}";
+      };
     }).config.system.build.isoImage);
 
 
@@ -64,7 +67,7 @@ let
 
     hydraJob ((import lib/eval-config.nix {
       inherit system;
-      modules = [ configuration module versionModule ];
+      modules = makeModules module {};
     }).config.system.build.sdImage);
 
 
@@ -77,7 +80,7 @@ let
 
       config = (import lib/eval-config.nix {
         inherit system;
-        modules = [ configuration module versionModule ];
+        modules = makeModules module {};
       }).config;
 
       tarball = config.system.build.tarball;
@@ -97,7 +100,7 @@ let
 
   buildFromConfig = module: sel: forAllSystems (system: hydraJob (sel (import ./lib/eval-config.nix {
     inherit system;
-    modules = [ configuration module versionModule ] ++ singleton
+    modules = makeModules module
       ({ ... }:
       { fileSystems."/".device  = mkDefault "/dev/sda1";
         boot.loader.grub.device = mkDefault "/dev/sda";
@@ -108,7 +111,7 @@ let
     let
       configEvaled = import lib/eval-config.nix {
         inherit system;
-        modules = [ module versionModule ];
+        modules = makeModules module {};
       };
       build = configEvaled.config.system.build;
       kernelTarget = configEvaled.pkgs.stdenv.hostPlatform.platform.kernelTarget;

From d2d80e6d308b0f3dec6db43768a916831c9d91f1 Mon Sep 17 00:00:00 2001
From: Jan Malakhovski <oxij@oxij.org>
Date: Wed, 7 Nov 2018 09:07:40 +0000
Subject: [PATCH 0677/1129] firefox: disable pulseaudio support on non-Linux by
 default

---
 pkgs/applications/networking/browsers/firefox/common.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/applications/networking/browsers/firefox/common.nix b/pkgs/applications/networking/browsers/firefox/common.nix
index 16c9b548325e..706f5c9d7508 100644
--- a/pkgs/applications/networking/browsers/firefox/common.nix
+++ b/pkgs/applications/networking/browsers/firefox/common.nix
@@ -18,7 +18,7 @@
 ## optional libraries
 
 , alsaSupport ? stdenv.isLinux, alsaLib
-, pulseaudioSupport ? true, libpulseaudio
+, pulseaudioSupport ? stdenv.isLinux, libpulseaudio
 , ffmpegSupport ? true, gstreamer, gst-plugins-base
 , gtk3Support ? true, gtk2, gtk3, wrapGAppsHook
 , gssSupport ? true, kerberos

From 2f5e4c733b1aa2caeb07c4c7637050a8e82dd506 Mon Sep 17 00:00:00 2001
From: Jan Malakhovski <oxij@oxij.org>
Date: Wed, 7 Nov 2018 09:07:42 +0000
Subject: [PATCH 0678/1129] lib: commitIdFromGitRepo: simplify a tiny bit

---
 lib/sources.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/lib/sources.nix b/lib/sources.nix
index e64b23414e86..1a9f3f7d1f34 100644
--- a/lib/sources.nix
+++ b/lib/sources.nix
@@ -73,7 +73,7 @@ rec {
   # Get the commit id of a git repo
   # Example: commitIdFromGitRepo <nixpkgs/.git>
   commitIdFromGitRepo =
-    let readCommitFromFile = path: file:
+    let readCommitFromFile = file: path:
       with builtins;
         let fileName       = toString path + "/" + file;
             packedRefsName = toString path + "/packed-refs";
@@ -85,7 +85,7 @@ rec {
                  matchRef    = match "^ref: (.*)$" fileContent;
              in if   isNull matchRef
                 then fileContent
-                else readCommitFromFile path (lib.head matchRef)
+                else readCommitFromFile (lib.head matchRef) path
            # Sometimes, the file isn't there at all and has been packed away in the
            # packed-refs file, so we have to grep through it:
            else if lib.pathExists packedRefsName
@@ -96,7 +96,7 @@ rec {
                 then throw ("Could not find " + file + " in " + packedRefsName)
                 else lib.head matchRef
            else throw ("Not a .git directory: " + path);
-    in lib.flip readCommitFromFile "HEAD";
+    in readCommitFromFile "HEAD";
 
   pathHasContext = builtins.hasContext or (lib.hasPrefix builtins.storeDir);
 

From f623f8c51e9564932e021a3fb00f9cc89ae3de36 Mon Sep 17 00:00:00 2001
From: Jan Malakhovski <oxij@oxij.org>
Date: Wed, 7 Nov 2018 09:07:43 +0000
Subject: [PATCH 0679/1129] espeak-ng: tiny cleanup

---
 pkgs/applications/audio/espeak-ng/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/applications/audio/espeak-ng/default.nix b/pkgs/applications/audio/espeak-ng/default.nix
index f4160ff6f808..5d0af8cf17ab 100644
--- a/pkgs/applications/audio/espeak-ng/default.nix
+++ b/pkgs/applications/audio/espeak-ng/default.nix
@@ -27,7 +27,7 @@ stdenv.mkDerivation rec {
 
   meta = with stdenv.lib; {
     description = "Open source speech synthesizer that supports over 70 languages, based on eSpeak";
-    homepage = https://github.com/espeak-ng/espeak-ng;
+    homepage = src.meta.homepage;
     license = licenses.gpl3;
     maintainers = with maintainers; [ aske ];
     platforms = platforms.linux;

From c0a4e467142591eb3d05aa3de41e3ac4cf63374e Mon Sep 17 00:00:00 2001
From: Jan Malakhovski <oxij@oxij.org>
Date: Wed, 7 Nov 2018 09:07:45 +0000
Subject: [PATCH 0680/1129] qt5: use https, tiny cleanup

---
 pkgs/development/libraries/qt-5/5.11/default.nix   | 2 +-
 pkgs/development/libraries/qt-5/modules/qtbase.nix | 2 +-
 2 files changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/qt-5/5.11/default.nix b/pkgs/development/libraries/qt-5/5.11/default.nix
index d65fe9d219c0..bc4b0a8f33be 100644
--- a/pkgs/development/libraries/qt-5/5.11/default.nix
+++ b/pkgs/development/libraries/qt-5/5.11/default.nix
@@ -33,7 +33,7 @@ let
 
   qtCompatVersion = "5.11";
 
-  mirror = "http://download.qt.io";
+  mirror = "https://download.qt.io";
   srcs = import ./srcs.nix { inherit fetchurl; inherit mirror; } // {
     # Community port of the now unmaintained upstream qtwebkit.
     qtwebkit = {
diff --git a/pkgs/development/libraries/qt-5/modules/qtbase.nix b/pkgs/development/libraries/qt-5/modules/qtbase.nix
index b8511533a799..f5f5c69455f5 100644
--- a/pkgs/development/libraries/qt-5/modules/qtbase.nix
+++ b/pkgs/development/libraries/qt-5/modules/qtbase.nix
@@ -18,7 +18,7 @@
   withGtk3 ? false, dconf ? null, gtk3 ? null,
 
   # options
-  libGLSupported ? (!stdenv.isDarwin),
+  libGLSupported ? !stdenv.isDarwin,
   libGL,
   buildExamples ? false,
   buildTests ? false,

From 3902085b3f5a2cb00d715a3c3da68dddeaae10dc Mon Sep 17 00:00:00 2001
From: Jan Malakhovski <oxij@oxij.org>
Date: Wed, 7 Nov 2018 09:07:48 +0000
Subject: [PATCH 0681/1129] mesa: tiny cleanup

---
 pkgs/development/libraries/mesa/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/libraries/mesa/default.nix b/pkgs/development/libraries/mesa/default.nix
index ff45162c5a89..d2539f8d54e7 100644
--- a/pkgs/development/libraries/mesa/default.nix
+++ b/pkgs/development/libraries/mesa/default.nix
@@ -25,20 +25,20 @@
 
 with stdenv.lib;
 
-if ! lists.elem stdenv.hostPlatform.system platforms.mesaPlatforms then
+if ! elem stdenv.hostPlatform.system platforms.mesaPlatforms then
   throw "unsupported platform for Mesa"
 else
 
 let
   defaultGalliumDrivers =
-    optionals (builtins.elem "drm" eglPlatforms)
+    optionals (elem "drm" eglPlatforms)
     (if stdenv.isAarch32
     then ["virgl" "nouveau" "freedreno" "vc4" "etnaviv" "imx"]
     else if stdenv.isAarch64
     then ["virgl" "nouveau" "vc4" ]
     else ["virgl" "svga" "i915" "r300" "r600" "radeonsi" "nouveau"]);
   defaultDriDrivers =
-    optionals (builtins.elem "drm" eglPlatforms)
+    optionals (elem "drm" eglPlatforms)
     (if (stdenv.isAarch32 || stdenv.isAarch64)
     then ["nouveau"]
     else ["i915" "i965" "nouveau" "radeon" "r200"]);

From 67a5c0da41e865a9fba06a8ecf8d5a43904e5ad5 Mon Sep 17 00:00:00 2001
From: Jan Malakhovski <oxij@oxij.org>
Date: Wed, 7 Nov 2018 08:41:55 +0000
Subject: [PATCH 0682/1129] tree-wide: fix all `rev`s of `fetchsvn`

---
 pkgs/games/blackshades/default.nix            | 2 +-
 pkgs/games/blackshadeselite/default.nix       | 2 +-
 pkgs/games/privateer/default.nix              | 2 +-
 pkgs/games/vdrift/default.nix                 | 2 +-
 pkgs/misc/cups/drivers/splix/default.nix      | 6 +++---
 pkgs/os-specific/linux/kernel/linux-libre.nix | 2 +-
 pkgs/servers/asterisk/default.nix             | 2 +-
 pkgs/tools/graphics/netpbm/default.nix        | 2 +-
 8 files changed, 10 insertions(+), 10 deletions(-)

diff --git a/pkgs/games/blackshades/default.nix b/pkgs/games/blackshades/default.nix
index 4b874c954b0a..bf58b523e76e 100644
--- a/pkgs/games/blackshades/default.nix
+++ b/pkgs/games/blackshades/default.nix
@@ -4,7 +4,7 @@ stdenv.mkDerivation rec {
   name = "blackshades-svn-110";
   src = fetchsvn {
     url = svn://svn.icculus.org/blackshades/trunk;
-    rev = 110;
+    rev = "110";
     sha256 = "0kbrh1dympk8scjxr6av24qs2bffz44l8qmw2m5gyqf4g3rxf6ra";
   };
 
diff --git a/pkgs/games/blackshadeselite/default.nix b/pkgs/games/blackshadeselite/default.nix
index 2f503e02ec20..25b9321bec39 100644
--- a/pkgs/games/blackshadeselite/default.nix
+++ b/pkgs/games/blackshadeselite/default.nix
@@ -4,7 +4,7 @@ stdenv.mkDerivation rec {
   name = "blackshades-elite-svn-29";
   src = fetchsvn {
     url = svn://svn.gna.org/svn/blackshadeselite/trunk;
-    rev = 29;
+    rev = "29";
     sha256 = "1lkws5pqpgcgdlar11waikp6y41z678457n9jcik7nhn53cjjr1s";
   };
 
diff --git a/pkgs/games/privateer/default.nix b/pkgs/games/privateer/default.nix
index f6f3e6001825..301249789dad 100644
--- a/pkgs/games/privateer/default.nix
+++ b/pkgs/games/privateer/default.nix
@@ -8,7 +8,7 @@ stdenv.mkDerivation {
   src = fetchsvn {
     #url = "mirror://sourceforge/project/privateer/Wing%20Commander%20Privateer/Privateer%20Gemini%20Gold%201.03/PrivateerGold1.03.bz2.bin";
     url = "https://privateer.svn.sourceforge.net/svnroot/privateer/privgold/trunk/engine";
-    rev = 294;
+    rev = "294";
     sha256 = "e1759087d4565d3fc95e5c87d0f6ddf36b2cd5befec5695ec56ed5f3cd144c63";
   };
 
diff --git a/pkgs/games/vdrift/default.nix b/pkgs/games/vdrift/default.nix
index 7e43fbf2c880..6c571da561c5 100644
--- a/pkgs/games/vdrift/default.nix
+++ b/pkgs/games/vdrift/default.nix
@@ -3,7 +3,7 @@
 
 , data ? fetchsvn {
     url = "svn://svn.code.sf.net/p/vdrift/code/vdrift-data";
-    rev = 1386;
+    rev = "1386";
     sha256 = "0ka6zir9hg0md5p03dl461jkvbk05ywyw233hnc3ka6shz3vazi1";
   }
 }:
diff --git a/pkgs/misc/cups/drivers/splix/default.nix b/pkgs/misc/cups/drivers/splix/default.nix
index 012b37959d8f..e227de086de6 100644
--- a/pkgs/misc/cups/drivers/splix/default.nix
+++ b/pkgs/misc/cups/drivers/splix/default.nix
@@ -1,7 +1,6 @@
 { stdenv, fetchsvn, fetchurl, cups, cups-filters, jbigkit, zlib }:
 
 let
-  rev = "315";
 
   color-profiles = stdenv.mkDerivation {
     name = "splix-color-profiles-20070625";
@@ -19,14 +18,15 @@ let
     '';
   };
 
-in stdenv.mkDerivation {
+in stdenv.mkDerivation rec {
   name = "splix-svn-${rev}";
+  rev = "315";
 
   src = fetchsvn {
     # We build this from svn, because splix hasn't been in released in several years
     # although the community has been adding some new printer models.
     url = "svn://svn.code.sf.net/p/splix/code/splix";
-    rev = "r${rev}";
+    inherit rev;
     sha256 = "16wbm4xnz35ca3mw2iggf5f4jaxpyna718ia190ka6y4ah932jxl";
   };
 
diff --git a/pkgs/os-specific/linux/kernel/linux-libre.nix b/pkgs/os-specific/linux/kernel/linux-libre.nix
index 2195bb7a29ce..31cad2589217 100644
--- a/pkgs/os-specific/linux/kernel/linux-libre.nix
+++ b/pkgs/os-specific/linux/kernel/linux-libre.nix
@@ -1,7 +1,7 @@
 { stdenv, lib, fetchsvn, linux
 , scripts ? fetchsvn {
     url = "https://www.fsfla.org/svn/fsfla/software/linux-libre/releases/tags/";
-    rev = "r15295";
+    rev = "15295";
     sha256 = "03kqbjy7w9zg6ry86h9sxa33z0rblznhba109lwmjwy0wx7yk1cs";
   }
 , ...
diff --git a/pkgs/servers/asterisk/default.nix b/pkgs/servers/asterisk/default.nix
index b2b681bcc8bd..37f93c8e87e8 100644
--- a/pkgs/servers/asterisk/default.nix
+++ b/pkgs/servers/asterisk/default.nix
@@ -76,7 +76,7 @@ let
 
   mp3-202 = fetchsvn {
     url = http://svn.digium.com/svn/thirdparty/mp3/trunk;
-    rev = 202;
+    rev = "202";
     sha256 = "1s9idx2miwk178sa731ig9r4fzx4gy1q8xazfqyd7q4lfd70s1cy";
   };
 
diff --git a/pkgs/tools/graphics/netpbm/default.nix b/pkgs/tools/graphics/netpbm/default.nix
index 05aa7b866360..534cefe9bf6c 100644
--- a/pkgs/tools/graphics/netpbm/default.nix
+++ b/pkgs/tools/graphics/netpbm/default.nix
@@ -9,7 +9,7 @@ stdenv.mkDerivation rec {
 
   src = fetchsvn {
     url = "https://svn.code.sf.net/p/netpbm/code/advanced";
-    rev = 3264;
+    rev = "3264";
     sha256 = "17fmyjbxp1l18rma7gb0m8wd9kx2iwhqs8dd6fpalsn2cr8mf8hf";
   };
 

From 56802ad698583365b8509cad16c45eeae045a722 Mon Sep 17 00:00:00 2001
From: Jan Malakhovski <oxij@oxij.org>
Date: Wed, 7 Nov 2018 08:41:57 +0000
Subject: [PATCH 0683/1129] gnuradio-rds: fix src

---
 pkgs/applications/misc/gnuradio/rds.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/applications/misc/gnuradio/rds.nix b/pkgs/applications/misc/gnuradio/rds.nix
index b617791dc2e1..5d9670ba3072 100644
--- a/pkgs/applications/misc/gnuradio/rds.nix
+++ b/pkgs/applications/misc/gnuradio/rds.nix
@@ -11,7 +11,7 @@ stdenv.mkDerivation rec {
   src = fetchFromGitHub {
     owner = "bastibl";
     repo = "gr-rds";
-    rev = "$v{version}";
+    rev = "v${version}";
     sha256 = "008284ya464q4h4fd0zvcn6g7bym231p8fl3kdxncz9ks4zsbsxs";
   };
 

From a1f23bf1c8d9c34d9773b0b0b546e1c8e3a19ad9 Mon Sep 17 00:00:00 2001
From: Elis Hirwing <elis@hirwing.se>
Date: Wed, 7 Nov 2018 18:34:37 +0100
Subject: [PATCH 0684/1129] nixos/dmrconfig: Add module to enable udev rules

---
 nixos/modules/module-list.nix        |  1 +
 nixos/modules/programs/dmrconfig.nix | 38 ++++++++++++++++++++++++++++
 2 files changed, 39 insertions(+)
 create mode 100644 nixos/modules/programs/dmrconfig.nix

diff --git a/nixos/modules/module-list.nix b/nixos/modules/module-list.nix
index 37e90232da2a..a191318a7022 100644
--- a/nixos/modules/module-list.nix
+++ b/nixos/modules/module-list.nix
@@ -90,6 +90,7 @@
   ./programs/criu.nix
   ./programs/dconf.nix
   ./programs/digitalbitbox/default.nix
+  ./programs/dmrconfig.nix
   ./programs/environment.nix
   ./programs/firejail.nix
   ./programs/fish.nix
diff --git a/nixos/modules/programs/dmrconfig.nix b/nixos/modules/programs/dmrconfig.nix
new file mode 100644
index 000000000000..e48a4f318370
--- /dev/null
+++ b/nixos/modules/programs/dmrconfig.nix
@@ -0,0 +1,38 @@
+{ config, lib, pkgs, ... }:
+
+with lib;
+
+let
+  cfg = config.programs.dmrconfig;
+
+in {
+  meta.maintainers = [ maintainers.etu ];
+
+  ###### interface
+  options = {
+    programs.dmrconfig = {
+      enable = mkOption {
+        default = false;
+        type = types.bool;
+        description = ''
+          Whether to configure system to enable use of dmrconfig. This
+          enables the required udev rules and installs the program.
+        '';
+        relatedPackages = [ "dmrconfig" ];
+      };
+
+      package = mkOption {
+        default = pkgs.dmrconfig;
+        type = types.package;
+        defaultText = "pkgs.dmrconfig";
+        description = "dmrconfig derivation to use";
+      };
+    };
+  };
+
+  ###### implementation
+  config = mkIf cfg.enable {
+    environment.systemPackages = [ cfg.package ];
+    services.udev.packages = [ cfg.package ];
+  };
+}

From 7189258afded4d1980037bde42d6489e2556542a Mon Sep 17 00:00:00 2001
From: Elis Hirwing <elis@hirwing.se>
Date: Wed, 7 Nov 2018 18:38:43 +0100
Subject: [PATCH 0685/1129] dmrconfig: 2018-10-29 -> 2018-11-07

---
 pkgs/applications/misc/dmrconfig/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/misc/dmrconfig/default.nix b/pkgs/applications/misc/dmrconfig/default.nix
index 5e2a99e9ce0a..5d02eb937ffe 100644
--- a/pkgs/applications/misc/dmrconfig/default.nix
+++ b/pkgs/applications/misc/dmrconfig/default.nix
@@ -3,13 +3,13 @@
 
 stdenv.mkDerivation rec {
   name = "dmrconfig-${version}";
-  version = "2018-10-29";
+  version = "2018-11-07";
 
   src = fetchFromGitHub {
     owner = "sergev";
     repo = "dmrconfig";
-    rev = "4924d00283c3c81a4b8251669e42aecd96b6145a";
-    sha256 = "00a4hmbr71g0d4faskb8q96y6z212g2r4n533yvp88z8rq8vbxxn";
+    rev = "b58985d3c848b927e91699d97f96d9de014c3fc7";
+    sha256 = "083f21hz6vqjpndkn27nsjnhnc5a4bw0cr26ryfqcvz275rj4k18";
   };
 
   buildInputs = [

From 50d9f551cbc99c0cbcc3817b34f46e728fec2f45 Mon Sep 17 00:00:00 2001
From: Antoine Eiche <lewo@abesis.fr>
Date: Thu, 8 Nov 2018 08:43:39 +0100
Subject: [PATCH 0686/1129] nixos/tests/hydra: set the project visible

If projects are not visible, the are not taken into account by search
queries and it's quite hard to debug!
---
 nixos/tests/hydra/create-trivial-project.sh | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/nixos/tests/hydra/create-trivial-project.sh b/nixos/tests/hydra/create-trivial-project.sh
index 3cca5665acc5..39122c9b473a 100755
--- a/nixos/tests/hydra/create-trivial-project.sh
+++ b/nixos/tests/hydra/create-trivial-project.sh
@@ -31,7 +31,8 @@ mycurl -X POST -d '@data.json' $URL/login -c hydra-cookie.txt
 cat >data.json <<EOF
 {
   "displayname":"Trivial",
-  "enabled":"1"
+  "enabled":"1",
+  "visible":"1"
 }
 EOF
 mycurl --silent -X PUT $URL/project/$PROJECT_NAME -d @data.json -b hydra-cookie.txt

From 2f4dae8f563fb28484c043960f825f469c1aa35f Mon Sep 17 00:00:00 2001
From: Christian Rackerseder <git@echooff.de>
Date: Thu, 8 Nov 2018 08:48:53 +0100
Subject: [PATCH 0687/1129] yarn: 1.12.1 -> 1.12.3

---
 maintainers/maintainer-list.nix         | 5 +++++
 pkgs/development/tools/yarn/default.nix | 6 +++---
 2 files changed, 8 insertions(+), 3 deletions(-)

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index 1b04b43413c3..9d186315f18f 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -3820,6 +3820,11 @@
     github = "scolobb";
     name = "Sergiu Ivanov";
   };
+  screendriver = {
+    email = "nix@echooff.de";
+    github = "screendriver";
+    name = "Christian Rackerseder";
+  };
   Scriptkiddi = {
     email = "nixos@scriptkiddi.de";
     github = "scriptkiddi";
diff --git a/pkgs/development/tools/yarn/default.nix b/pkgs/development/tools/yarn/default.nix
index be2b0689f925..e2e115992bc6 100644
--- a/pkgs/development/tools/yarn/default.nix
+++ b/pkgs/development/tools/yarn/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "yarn-${version}";
-  version = "1.12.1";
+  version = "1.12.3";
 
   src = fetchzip {
     url = "https://github.com/yarnpkg/yarn/releases/download/v${version}/yarn-v${version}.tar.gz";
-    sha256 = "084xci8y5na2765sh8flc8c5z7fik62filf1p58aqrb2000vna1j";
+    sha256 = "0izn7lfvfw046qlxdgiiiyqj24sl2yclm6v8bzy8ilsr00csbrm2";
   };
 
   buildInputs = [ nodejs ];
@@ -22,7 +22,7 @@ stdenv.mkDerivation rec {
     homepage = https://yarnpkg.com/;
     description = "Fast, reliable, and secure dependency management for javascript";
     license = licenses.bsd2;
-    maintainers = [ maintainers.offline ];
+    maintainers = [ maintainers.offline maintainers.screendriver ];
     platforms = platforms.linux ++ platforms.darwin;
   };
 }

From dc74c44e6732bd6812a75defeb12fa0096455a6f Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Fri, 19 Oct 2018 12:34:22 +0800
Subject: [PATCH 0688/1129] matrix-synapse: prepare for python3 switch

With this commit, we *can* swap python2 for python3 to run synapse using python3
instead.

The reason for not making the switch is that a number of CLI tools provided with
synapse do not yet work under py3 despite synapse running fine.

So this doesn't actually do anything on its own except to prepare for the
upcoming py3 switch.
---
 pkgs/servers/matrix-synapse/default.nix | 55 ++++++++++++++-----------
 1 file changed, 31 insertions(+), 24 deletions(-)

diff --git a/pkgs/servers/matrix-synapse/default.nix b/pkgs/servers/matrix-synapse/default.nix
index e0c666b002a9..ba89dc7bdb79 100644
--- a/pkgs/servers/matrix-synapse/default.nix
+++ b/pkgs/servers/matrix-synapse/default.nix
@@ -1,47 +1,54 @@
-{ lib, stdenv, python2Packages, fetchurl, fetchFromGitHub
+{ lib, stdenv, python2
 , enableSystemd ? true
 }:
+
+with python2.pkgs;
+
 let
-  matrix-angular-sdk = python2Packages.buildPythonPackage rec {
-    name = "matrix-angular-sdk-${version}";
+  matrix-angular-sdk = buildPythonPackage rec {
+    pname = "matrix-angular-sdk";
     version = "0.6.8";
 
-    src = fetchurl {
-      url = "mirror://pypi/m/matrix-angular-sdk/matrix-angular-sdk-${version}.tar.gz";
+    src = fetchPypi {
+      inherit pname version;
       sha256 = "0gmx4y5kqqphnq3m7xk2vpzb0w2a4palicw7wfdr1q2schl9fhz2";
     };
+
+    # no checks from Pypi but as this is abandonware, there will be no
+    # new version anyway
+    doCheck = false;
   };
-  matrix-synapse-ldap3 = python2Packages.buildPythonPackage rec {
+
+  matrix-synapse-ldap3 = buildPythonPackage rec {
     pname = "matrix-synapse-ldap3";
     version = "0.1.3";
 
-    src = fetchFromGitHub {
-      owner = "matrix-org";
-      repo = "matrix-synapse-ldap3";
-      rev = "v${version}";
-      sha256 = "0ss7ld3bpmqm8wcs64q1kb7vxlpmwk9lsgq0mh21a9izyfc7jb2l";
+    src = fetchPypi {
+      inherit pname version;
+      sha256 = "0a0d1y9yi0abdkv6chbmxr3vk36gynnqzrjhbg26q4zg06lh9kgn";
     };
 
-    propagatedBuildInputs = with python2Packages; [ service-identity ldap3 twisted ];
+    propagatedBuildInputs = [ service-identity ldap3 twisted ];
 
-    checkInputs = with python2Packages; [ ldaptor mock ];
+    # ldaptor is not ready for py3 yet
+    doCheck = !isPy3k;
+    checkInputs = [ ldaptor mock ];
   };
-in python2Packages.buildPythonApplication rec {
-  name = "matrix-synapse-${version}";
+
+in buildPythonApplication rec {
+  pname = "matrix-synapse";
   version = "0.33.8";
 
-  src = fetchFromGitHub {
-    owner = "matrix-org";
-    repo = "synapse";
-    rev = "v${version}";
-    sha256 = "122ba09xkc1x35qaajcynkjikg342259rgy81m8abz0l8mcg4mkm";
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0j8knnqpkidkmpwr2i1k9cwlnwfqpzn3q6ysjvrwpa76hpfcg40l";
   };
 
   patches = [
     ./matrix-synapse.patch
   ];
 
-  propagatedBuildInputs = with python2Packages; [
+  propagatedBuildInputs = [
     bcrypt
     bleach
     canonicaljson
@@ -75,12 +82,12 @@ in python2Packages.buildPythonApplication rec {
     unpaddedbase64
   ] ++ lib.optional enableSystemd systemd;
 
+  # tests fail under py3 for now, but version 0.34.0 will use py3 by default
+  # https://github.com/matrix-org/synapse/issues/4036
   doCheck = true;
   checkPhase = "python -m twisted.trial test";
 
-  buildInputs = with python2Packages; [
-    mock setuptoolsTrial
-  ];
+  checkInputs = [ mock setuptoolsTrial ];
 
   meta = with stdenv.lib; {
     homepage = https://matrix.org;

From 92e1c41623038c6cff9dee09d476dcb7c765f12d Mon Sep 17 00:00:00 2001
From: Antoine Eiche <lewo@abesis.fr>
Date: Thu, 8 Nov 2018 10:18:47 +0100
Subject: [PATCH 0689/1129] skopeo: 0.1.31 -> 0.1.32

---
 pkgs/development/tools/skopeo/default.nix | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/pkgs/development/tools/skopeo/default.nix b/pkgs/development/tools/skopeo/default.nix
index 0e3a9706d24d..7f39376dc069 100644
--- a/pkgs/development/tools/skopeo/default.nix
+++ b/pkgs/development/tools/skopeo/default.nix
@@ -5,18 +5,18 @@
 with stdenv.lib;
 
 let
-  version = "0.1.31";
+  version = "0.1.32";
 
   src = fetchFromGitHub {
     rev = "v${version}";
-    owner = "projectatomic";
+    owner = "containers";
     repo = "skopeo";
-    sha256 = "02z46wxhms8yph03ksl7i4hbqy15v3y1r43js9dxn0a45vxkm7lb";
+    sha256 = "0pyii4z9xf23lsdx4d3m5pkdyrsi4v1pbjj8l7fjgyfv8ncrjyn8";
   };
 
   defaultPolicyFile = runCommand "skopeo-default-policy.json" {} "cp ${src}/default-policy.json $out";
 
-  goPackagePath = "github.com/projectatomic/skopeo";
+  goPackagePath = "github.com/containers/skopeo";
 
 in
 buildGoPackage rec {
@@ -32,8 +32,8 @@ buildGoPackage rec {
 
   buildFlagsArray = ''
     -ldflags=
-    -X github.com/projectatomic/skopeo/vendor/github.com/containers/image/signature.systemDefaultPolicyPath=${defaultPolicyFile}
-    -X github.com/projectatomic/skopeo/vendor/github.com/containers/image/internal/tmpdir.unixTempDirForBigFiles=/tmp
+    -X github.com/containers/skopeo/vendor/github.com/containers/image/signature.systemDefaultPolicyPath=${defaultPolicyFile}
+    -X github.com/containers/skopeo/vendor/github.com/containers/image/internal/tmpdir.unixTempDirForBigFiles=/tmp
   '';
 
   preBuild = ''

From 9c0decaee5fd77c6cbb7bcca405cde3d6402a6ba Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Thu, 8 Nov 2018 17:27:42 +0800
Subject: [PATCH 0690/1129] xca: 2.1.1 -> 2.1.2

---
 pkgs/applications/misc/xca/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/xca/default.nix b/pkgs/applications/misc/xca/default.nix
index 7b95cf002ca1..280b30128727 100644
--- a/pkgs/applications/misc/xca/default.nix
+++ b/pkgs/applications/misc/xca/default.nix
@@ -3,13 +3,13 @@
 
 mkDerivation rec {
   name = "xca-${version}";
-  version = "2.1.1";
+  version = "2.1.2";
 
   src = fetchFromGitHub {
     owner  = "chris2511";
     repo   = "xca";
     rev    = "RELEASE.${version}";
-    sha256 = "1d09329a80axwqhxixwasd8scsmh23vsq1076amy5c8173s4ambi";
+    sha256 = "0slfqmz0b01lwmrv4h78hmrsdrhcyc7sjzsxcw05ylgmhvdq3dw9";
   };
 
   postPatch = ''

From 02b2f62d659165cfdce4ba214e1a97088744c4bc Mon Sep 17 00:00:00 2001
From: Andy Scott <andy.g.scott@gmail.com>
Date: Mon, 5 Nov 2018 10:42:40 -0800
Subject: [PATCH 0691/1129] bazel: support tools/bazel workspace bootstrap
 scripts

Bazel supports per-workspace bootstrap scripts at $WORKSPACE_ROOT/
tools/bazel. This adds support for this behavior, which is needed
by many Bazel projects (OSS and private).
---
 pkgs/development/tools/build-managers/bazel/default.nix | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/tools/build-managers/bazel/default.nix b/pkgs/development/tools/build-managers/bazel/default.nix
index 19836b412c04..dcb9f5934368 100644
--- a/pkgs/development/tools/build-managers/bazel/default.nix
+++ b/pkgs/development/tools/build-managers/bazel/default.nix
@@ -192,7 +192,8 @@ stdenv.mkDerivation rec {
 
   installPhase = ''
     mkdir -p $out/bin
-    mv output/bazel $out/bin
+    cp scripts/packages/bazel.sh $out/bin/bazel
+    mv output/bazel $out/bin/bazel-real
     wrapProgram "$out/bin/bazel" --set JAVA_HOME "${runJdk}"
     mkdir -p $out/share/bash-completion/completions $out/share/zsh/site-functions
     mv output/bazel-complete.bash $out/share/bash-completion/completions/bazel

From e4fbd57165a3632b2dec13348a7a8fc0f516adce Mon Sep 17 00:00:00 2001
From: Andy Scott <andy.g.scott@gmail.com>
Date: Mon, 5 Nov 2018 12:59:02 -0800
Subject: [PATCH 0692/1129] bazel: add tests for boostrap script behavior

---
 .../tools/build-managers/bazel/default.nix    | 23 +++++++++++++++++++
 1 file changed, 23 insertions(+)

diff --git a/pkgs/development/tools/build-managers/bazel/default.nix b/pkgs/development/tools/build-managers/bazel/default.nix
index dcb9f5934368..935e262bb167 100644
--- a/pkgs/development/tools/build-managers/bazel/default.nix
+++ b/pkgs/development/tools/build-managers/bazel/default.nix
@@ -200,6 +200,29 @@ stdenv.mkDerivation rec {
     cp scripts/zsh_completion/_bazel $out/share/zsh/site-functions/
   '';
 
+  doInstallCheck = true;
+  installCheckPhase = ''
+    export TEST_TMPDIR=$(pwd)
+
+    mkdir -p tools
+    touch tools/bazel
+    chmod +x tools/bazel
+
+    echo "#!/bin/bash -e" > tools/bazel
+    echo "exit 1" >> tools/bazel
+
+    ! $out/bin/bazel test --test_output=errors \
+        examples/cpp:hello-success_test \
+        examples/java-native/src/test/java/com/example/myproject:hello
+
+    echo "#!/bin/bash -e" > tools/bazel
+    echo "exec \"\$BAZEL_REAL\" \"\$@\"" >> tools/bazel
+
+    $out/bin/bazel test --test_output=errors \
+        examples/cpp:hello-success_test \
+        examples/java-native/src/test/java/com/example/myproject:hello
+  '';
+
   # Save paths to hardcoded dependencies so Nix can detect them.
   postFixup = ''
     mkdir -p $out/nix-support

From cc6d5b34fa64af63a74aca35c3bf4c173ae3d591 Mon Sep 17 00:00:00 2001
From: Profpatsch <mail@profpatsch.de>
Date: Wed, 7 Nov 2018 22:24:34 +0100
Subject: [PATCH 0693/1129] bazel: refactor tests a bit

---
 .../tools/build-managers/bazel/default.nix    | 38 +++++++++++++------
 1 file changed, 26 insertions(+), 12 deletions(-)

diff --git a/pkgs/development/tools/build-managers/bazel/default.nix b/pkgs/development/tools/build-managers/bazel/default.nix
index 935e262bb167..966c91028ded 100644
--- a/pkgs/development/tools/build-managers/bazel/default.nix
+++ b/pkgs/development/tools/build-managers/bazel/default.nix
@@ -192,9 +192,15 @@ stdenv.mkDerivation rec {
 
   installPhase = ''
     mkdir -p $out/bin
+
+    # official wrapper scripts that searches for $WORKSPACE_ROOT/tools/bazel
+    # if it can’t find something in tools, it calls $out/bin/bazel-real
     cp scripts/packages/bazel.sh $out/bin/bazel
     mv output/bazel $out/bin/bazel-real
+
     wrapProgram "$out/bin/bazel" --set JAVA_HOME "${runJdk}"
+
+    # shell completion files
     mkdir -p $out/share/bash-completion/completions $out/share/zsh/site-functions
     mv output/bazel-complete.bash $out/share/bash-completion/completions/bazel
     cp scripts/zsh_completion/_bazel $out/share/zsh/site-functions/
@@ -204,23 +210,31 @@ stdenv.mkDerivation rec {
   installCheckPhase = ''
     export TEST_TMPDIR=$(pwd)
 
+    hello_test () {
+      $out/bin/bazel test --test_output=errors \
+        examples/cpp:hello-success_test \
+        examples/java-native/src/test/java/com/example/myproject:hello
+    }
+
+    # test whether $WORKSPACE_ROOT/tools/bazel works
+
     mkdir -p tools
-    touch tools/bazel
+    cat > tools/bazel <<"EOF"
+    #!${stdenv.shell} -e
+    exit 1
+    EOF
     chmod +x tools/bazel
 
-    echo "#!/bin/bash -e" > tools/bazel
-    echo "exit 1" >> tools/bazel
+    # first call should fail if tools/bazel is used
+    ! hello_test
 
-    ! $out/bin/bazel test --test_output=errors \
-        examples/cpp:hello-success_test \
-        examples/java-native/src/test/java/com/example/myproject:hello
+    cat > tools/bazel <<"EOF"
+    #!${stdenv.shell} -e
+    exec "$BAZEL_REAL" "$@"
+    EOF
 
-    echo "#!/bin/bash -e" > tools/bazel
-    echo "exec \"\$BAZEL_REAL\" \"\$@\"" >> tools/bazel
-
-    $out/bin/bazel test --test_output=errors \
-        examples/cpp:hello-success_test \
-        examples/java-native/src/test/java/com/example/myproject:hello
+    # second call succeeds because it defers to $out/bin/bazel-real
+    hello_test
   '';
 
   # Save paths to hardcoded dependencies so Nix can detect them.

From cd80aee9895807dcf327ed8efc79e3ad50705940 Mon Sep 17 00:00:00 2001
From: Robert Hensing <robert@roberthensing.nl>
Date: Thu, 8 Nov 2018 00:53:36 +0100
Subject: [PATCH 0694/1129] acsccid: init at 1.1.6

---
 pkgs/tools/security/acsccid/default.nix | 54 +++++++++++++++++++++++++
 pkgs/top-level/all-packages.nix         |  2 +
 2 files changed, 56 insertions(+)
 create mode 100644 pkgs/tools/security/acsccid/default.nix

diff --git a/pkgs/tools/security/acsccid/default.nix b/pkgs/tools/security/acsccid/default.nix
new file mode 100644
index 000000000000..246a2c5d9917
--- /dev/null
+++ b/pkgs/tools/security/acsccid/default.nix
@@ -0,0 +1,54 @@
+{ stdenv, fetchFromGitHub, autoconf, automake, libtool, gettext, flex, perl, pkgconfig, pcsclite, libusb }:
+
+stdenv.mkDerivation rec {
+  version = "1.1.6";
+  name = "acsccid-${version}";
+
+  src = fetchFromGitHub {
+    owner = "acshk";
+    repo = "acsccid";
+    rev = "26bc84c738d12701e6a7289ed578671d71cbf3cb";
+    sha256 = "09k7hvcay092wkyf0hjsvimg1h4qzss1nk7m5yanlib4ldhw5g5c";
+  };
+
+  doCheck = true;
+
+  nativeBuildInputs = [ pkgconfig ];
+  buildInputs = [ pcsclite libusb autoconf automake libtool gettext flex perl ];
+
+  postPatch = ''
+    sed -e s_/bin/echo_echo_g -i src/Makefile.am
+    patchShebangs src/convert_version.pl
+    patchShebangs src/create_Info_plist.pl
+  '';
+
+  preConfigure = ''
+    libtoolize --force
+    aclocal
+    autoheader
+    automake --force-missing --add-missing
+    autoconf
+    configureFlags="$configureFlags --enable-usbdropdir=$out/pcsc/drivers"
+  '';
+
+  meta = with stdenv.lib; {
+    description = "acsccid is a PC/SC driver for Linux/Mac OS X and it supports ACS CCID smart card readers.";
+    longDescription = ''
+      acsccid is a PC/SC driver for Linux/Mac OS X and it supports ACS CCID smart card
+      readers. This library provides a PC/SC IFD handler implementation and
+      communicates with the readers through the PC/SC Lite resource manager (pcscd).
+
+      acsccid is based on ccid. See CCID free software driver for more
+      information:
+      https://ccid.apdu.fr/
+
+      It can be enabled in /etc/nixos/configuration.nix by adding:
+        services.pcscd.enable = true;
+        services.pcscd.plugins = [ pkgs.acsccid ];
+    '';
+    homepage = src.meta.homepage;
+    license = licenses.lgpl2Plus;
+    maintainers = with maintainers; [ roberth ];
+    platforms = with platforms; unix;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 611f53c950a0..04a19783b347 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -9070,6 +9070,8 @@ with pkgs;
 
   acl = callPackage ../development/libraries/acl { };
 
+  acsccid = callPackage ../tools/security/acsccid { };
+
   activemq = callPackage ../development/libraries/apache-activemq { };
 
   adns = callPackage ../development/libraries/adns { };

From 544778d231d718c747655a4343928518d0bc9fa8 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Domen=20Ko=C5=BEar?= <domen@dev.si>
Date: Thu, 8 Nov 2018 11:17:12 +0000
Subject: [PATCH 0695/1129] qesteidutil: 3.12.10 -> 2018-08-21

---
 pkgs/tools/security/qesteidutil/default.nix | 17 ++++-------------
 1 file changed, 4 insertions(+), 13 deletions(-)

diff --git a/pkgs/tools/security/qesteidutil/default.nix b/pkgs/tools/security/qesteidutil/default.nix
index 20135895d766..0f9502a7ac97 100644
--- a/pkgs/tools/security/qesteidutil/default.nix
+++ b/pkgs/tools/security/qesteidutil/default.nix
@@ -4,8 +4,7 @@
 }:
 
 stdenv.mkDerivation rec {
-
-  version = "3.12.10";
+  version = "2018-08-21";
   name = "qesteidutil-${version}";
 
   src = fetchFromGitHub {
@@ -13,19 +12,11 @@ stdenv.mkDerivation rec {
     repo = "qesteidutil";
     # TODO: Switch back to this after next release.
     #rev = "v${version}";
-    # We require the remove breakpad stuff
-    rev = "efdfe4c5521f68f206569e71e292a664bb9f46aa";
-    sha256 = "0zly83sdqsf9lxnfw4ir2a9vmmfba181rhsrz61ga2zzpm2wf0f0";
+    rev = "3bb65ef345aaa0d589b37a5d0d6f5772e95b0cd7";
+    sha256 = "13xsw5gh4svp9a5nxcqv72mymivr7w1cyjbv2l6yf96m45bsd9x4";
     fetchSubmodules = true;
   };
 
-  patches = [
-    (fetchpatch {
-      url = https://github.com/open-eid/qesteidutil/commit/868e8245f2481e29e1154e168ac92d32e93a5425.patch;
-      sha256 = "0pwrkd8inf0qaf7lcchmj558k6z34ah672zcb722aa5ybbif0lkn";
-    })
-  ];
-
   nativeBuildInputs = [ pkgconfig ];
   buildInputs = [ cmake ccid qttools pcsclite qttranslations
                   hicolor-icon-theme
@@ -36,6 +27,6 @@ stdenv.mkDerivation rec {
     homepage = http://www.id.ee/;
     license = licenses.lgpl2;
     platforms = platforms.linux;
-    maintainers = [ maintainers.jagajaga ];
+    maintainers = with maintainers; [ jagajaga domenkozar ];
   };
 }

From ad521a275783708a6ba076771bbf1177c653e1ea Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Domen=20Ko=C5=BEar?= <domen@dev.si>
Date: Thu, 8 Nov 2018 11:41:38 +0000
Subject: [PATCH 0696/1129] libdigidocpp: 3.13.6 -> 3.13.7

---
 pkgs/development/libraries/libdigidocpp/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/libdigidocpp/default.nix b/pkgs/development/libraries/libdigidocpp/default.nix
index 3df820bc1263..e3172c2fc1f8 100644
--- a/pkgs/development/libraries/libdigidocpp/default.nix
+++ b/pkgs/development/libraries/libdigidocpp/default.nix
@@ -2,12 +2,12 @@
 , xercesc, xml-security-c, pkgconfig, xsd, zlib, xalanc, xxd }:
 
 stdenv.mkDerivation rec {
-  version = "3.13.6";
+  version = "3.13.7";
   name = "libdigidocpp-${version}";
 
   src = fetchurl {
      url = "https://github.com/open-eid/libdigidocpp/releases/download/v${version}/libdigidocpp-${version}.tar.gz";
-     sha256 = "1sdrj7664737k3kbnj2xrnilnx5ifj8hg42z8pxagb0j81x0pnqj";
+     sha256 = "1d8yx8avijp55p53fz4pd4ihjz6nyap0g8dq23bwg33411mdiqff";
   };
 
   nativeBuildInputs = [ cmake pkgconfig xxd ];

From e854a7a72f62dabd224c5396da152d9803665206 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Domen=20Ko=C5=BEar?= <domen@dev.si>
Date: Thu, 8 Nov 2018 11:42:01 +0000
Subject: [PATCH 0697/1129] qdigidoc: 3.13.6 -> 4.1.0

---
 pkgs/tools/security/qdigidoc/default.nix | 16 ++++++----------
 1 file changed, 6 insertions(+), 10 deletions(-)

diff --git a/pkgs/tools/security/qdigidoc/default.nix b/pkgs/tools/security/qdigidoc/default.nix
index 398f88ccfb6b..17bbf982255b 100644
--- a/pkgs/tools/security/qdigidoc/default.nix
+++ b/pkgs/tools/security/qdigidoc/default.nix
@@ -1,14 +1,14 @@
 { stdenv, fetchgit, fetchurl, cmake, darkhttpd, gettext, makeWrapper, pkgconfig
-, libdigidocpp, opensc, openldap, openssl, pcsclite, qtbase, qttranslations }:
+, libdigidocpp, opensc, openldap, openssl, pcsclite, qtbase, qttranslations, qtsvg }:
 
 stdenv.mkDerivation rec {
   name = "qdigidoc-${version}";
-  version = "3.13.6";
+  version = "4.1.0";
 
   src = fetchgit {
-    url = "https://github.com/open-eid/qdigidoc";
+    url = "https://github.com/open-eid/DigiDoc4-Client";
     rev = "v${version}";
-    sha256 = "1qq9fgvkc7fi37ly3kgxksrm4m5rxk9k5s5cig8z0cszsfk6h9lx";
+    sha256 = "1iry36h3pfnw2gqjnfhv53i2svybxj8jf18qh486djyai84hjr4d";
     fetchSubmodules = true;
   };
 
@@ -24,11 +24,6 @@ stdenv.mkDerivation rec {
       --replace $\{TSL_URL} file://${tsl}
   '';
 
-  patches = [
-    # https://github.com/open-eid/qdigidoc/pull/163
-    ./qt511.patch
-  ];
-
   buildInputs = [
     libdigidocpp
     opensc
@@ -36,11 +31,12 @@ stdenv.mkDerivation rec {
     openssl
     pcsclite
     qtbase
+    qtsvg
     qttranslations
   ];
 
   postInstall = ''
-    wrapProgram $out/bin/qdigidocclient \
+    wrapProgram $out/bin/qdigidoc4 \
       --prefix LD_LIBRARY_PATH : ${opensc}/lib/pkcs11/
   '';
 

From ff2b0316b4d0c861790fb407aa827a8eaf2634c5 Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Thu, 8 Nov 2018 08:40:24 -0500
Subject: [PATCH 0698/1129] docker: 18.06.1 -> 18.09

---
 pkgs/applications/virtualization/docker/default.nix | 8 ++++----
 pkgs/top-level/all-packages.nix                     | 6 +++---
 2 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/pkgs/applications/virtualization/docker/default.nix b/pkgs/applications/virtualization/docker/default.nix
index e83a1af44665..05c764086021 100644
--- a/pkgs/applications/virtualization/docker/default.nix
+++ b/pkgs/applications/virtualization/docker/default.nix
@@ -197,10 +197,10 @@ rec {
   # Get revisions from
   # https://github.com/docker/docker-ce/tree/v${version}/components/engine/hack/dockerfile/install/*
 
-  docker_18_06 = dockerGen rec {
-    version = "18.06.1-ce";
-    rev = "e68fc7a215d7133c34aa18e3b72b4a21fd0c6136"; # git commit
-    sha256 = "1bqd6pv5hga4j1s8jm8q5qdnfbjf8lw1ghdk0bw9hhqkn7rcnrv4";
+  docker_18_09 = dockerGen rec {
+    version = "18.09.0";
+    rev = "4d60db472b2bde6931072ca6467f2667c2590dff"; # git commit
+    sha256 = "0py944f5k71c1cf6ci96vnqk43d5979w7r82cngaxk1g6za6k5yj";
     runcRev = "69663f0bd4b60df09991c08812a60108003fa340";
     runcSha256 = "1l37r97l3ra4ph069w190d05r0a43s76nn9jvvlkbwrip1cp6gyq";
     containerdRev = "468a545b9edcd5932818eb9de8e72413e616e86e";
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 04a19783b347..49f2a13346a3 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -16238,10 +16238,10 @@ with pkgs;
   };
 
   inherit (callPackage ../applications/virtualization/docker {})
-    docker_18_06;
+    docker_18_09;
 
-  docker = docker_18_06;
-  docker-edge = docker_18_06;
+  docker = docker_18_09;
+  docker-edge = docker_18_09;
 
   docker-proxy = callPackage ../applications/virtualization/docker/proxy.nix { };
 

From 5d9add49a25bf33003e1b5baf51a8269b25ceb3b Mon Sep 17 00:00:00 2001
From: Maximilian Bosch <maximilian@mbosch.me>
Date: Thu, 8 Nov 2018 15:46:36 +0100
Subject: [PATCH 0699/1129] weechat: remove obsolete `aggregate-commands` patch

This was the rebased version of a patch which landed in WeeChat 2.3
which is now used on nixpkgs master (see 2702772d2d10dc482cbe20d766d214bf89d1ed71).
---
 .../irc/weechat/aggregate-commands.patch      | 110 ------------------
 1 file changed, 110 deletions(-)
 delete mode 100644 pkgs/applications/networking/irc/weechat/aggregate-commands.patch

diff --git a/pkgs/applications/networking/irc/weechat/aggregate-commands.patch b/pkgs/applications/networking/irc/weechat/aggregate-commands.patch
deleted file mode 100644
index 41e3c54a2d57..000000000000
--- a/pkgs/applications/networking/irc/weechat/aggregate-commands.patch
+++ /dev/null
@@ -1,110 +0,0 @@
-diff --git a/src/core/wee-command.c b/src/core/wee-command.c
-index 91c3c068d..8105e4171 100644
---- a/src/core/wee-command.c
-+++ b/src/core/wee-command.c
-@@ -8345,10 +8345,20 @@ command_exec_list (const char *command_list)
- void
- command_startup (int plugins_loaded)
- {
-+    int i;
-+
-     if (plugins_loaded)
-     {
-         command_exec_list (CONFIG_STRING(config_startup_command_after_plugins));
--        command_exec_list (weechat_startup_commands);
-+        if (weechat_startup_commands)
-+        {
-+            for (i = 0; i < weelist_size (weechat_startup_commands); i++)
-+            {
-+                command_exec_list (
-+                    weelist_string (
-+                        weelist_get (weechat_startup_commands, i)));
-+            }
-+        }
-     }
-     else
-         command_exec_list (CONFIG_STRING(config_startup_command_before_plugins));
-diff --git a/src/core/weechat.c b/src/core/weechat.c
-index f74598ad5..ff2e539d1 100644
---- a/src/core/weechat.c
-+++ b/src/core/weechat.c
-@@ -60,6 +60,7 @@
- #include "wee-eval.h"
- #include "wee-hdata.h"
- #include "wee-hook.h"
-+#include "wee-list.h"
- #include "wee-log.h"
- #include "wee-network.h"
- #include "wee-proxy.h"
-@@ -102,7 +103,8 @@ int weechat_no_gnutls = 0;             /* remove init/deinit of gnutls      */
-                                        /* (useful with valgrind/electric-f.)*/
- int weechat_no_gcrypt = 0;             /* remove init/deinit of gcrypt      */
-                                        /* (useful with valgrind)            */
--char *weechat_startup_commands = NULL; /* startup commands (-r flag)        */
-+struct t_weelist *weechat_startup_commands = NULL; /* startup commands      */
-+                                                   /* (option -r)           */
- 
- 
- /*
-@@ -152,9 +154,13 @@ weechat_display_usage ()
-           "  -h, --help               display this help\n"
-           "  -l, --license            display WeeChat license\n"
-           "  -p, --no-plugin          don't load any plugin at startup\n"
--          "  -r, --run-command <cmd>  run command(s) after startup\n"
--          "                           (many commands can be separated by "
--          "semicolons)\n"
-+          "  -P, --plugins <plugins>  load only these plugins at startup\n"
-+          "                           (see /help weechat.plugin.autoload)\n"
-+          "  -r, --run-command <cmd>  run command(s) after startup;\n"
-+          "                           many commands can be separated by "
-+          "semicolons,\n"
-+          "                           this option can be given multiple "
-+          "times\n"
-           "  -s, --no-script          don't load any script at startup\n"
-           "      --upgrade            upgrade WeeChat using session files "
-           "(see /help upgrade in WeeChat)\n"
-@@ -276,9 +282,10 @@ weechat_parse_args (int argc, char *argv[])
-         {
-             if (i + 1 < argc)
-             {
--                if (weechat_startup_commands)
--                    free (weechat_startup_commands);
--                weechat_startup_commands = strdup (argv[++i]);
-+                if (!weechat_startup_commands)
-+                    weechat_startup_commands = weelist_new ();
-+                weelist_add (weechat_startup_commands, argv[++i],
-+                             WEECHAT_LIST_POS_END, NULL);
-             }
-             else
-             {
-@@ -616,6 +623,8 @@ weechat_shutdown (int return_code, int crash)
-         free (weechat_home);
-     if (weechat_local_charset)
-         free (weechat_local_charset);
-+    if (weechat_startup_commands)
-+        weelist_free (weechat_startup_commands);
- 
-     if (crash)
-         abort ();
-diff --git a/src/core/weechat.h b/src/core/weechat.h
-index 9420ff415..cbb565a03 100644
---- a/src/core/weechat.h
-+++ b/src/core/weechat.h
-@@ -96,6 +96,8 @@
- /* name of environment variable with an extra lib dir */
- #define WEECHAT_EXTRA_LIBDIR "WEECHAT_EXTRA_LIBDIR"
- 
-+struct t_weelist;
-+
- /* global variables and functions */
- extern int weechat_headless;
- extern int weechat_debug_core;
-@@ -112,7 +114,7 @@ extern char *weechat_local_charset;
- extern int weechat_plugin_no_dlclose;
- extern int weechat_no_gnutls;
- extern int weechat_no_gcrypt;
--extern char *weechat_startup_commands;
-+extern struct t_weelist *weechat_startup_commands;
- 
- extern void weechat_term_check ();
- extern void weechat_shutdown (int return_code, int crash);

From 04c4ea1e819d9b0508689982302fb7d464748930 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 07:17:01 -0800
Subject: [PATCH 0700/1129] varnish6: 6.1.0 -> 6.1.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/varnish/versions
---
 pkgs/servers/varnish/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/varnish/default.nix b/pkgs/servers/varnish/default.nix
index 7517560a521c..e447035e32aa 100644
--- a/pkgs/servers/varnish/default.nix
+++ b/pkgs/servers/varnish/default.nix
@@ -47,8 +47,8 @@ in
     sha256 = "1cqlj12m426c1lak1hr1fx5zcfsjjvka3hfirz47hvy1g2fjqidq";
   };
   varnish6 = common {
-    version = "6.1.0";
-    sha256 = "0zg2aqkg7a4zsjpxj0s7mphxv5f9xy279hjwln30h901k18r46qn";
+    version = "6.1.1";
+    sha256 = "0gf9hzzrr1lndbbqi8cwlfasi7l517cy3nbgna88i78lm247rvp0";
     extraBuildInputs = [ python2.pkgs.sphinx ];
   };
 }

From 2d9a8df3df5d24034a23b0e2e4a8a024a9b17aba Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 07:28:44 -0800
Subject: [PATCH 0701/1129] virt-what: 1.18 -> 1.19

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/virt-what/versions
---
 pkgs/applications/virtualization/virt-what/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/virtualization/virt-what/default.nix b/pkgs/applications/virtualization/virt-what/default.nix
index 0236a34bb124..8a339ac83224 100644
--- a/pkgs/applications/virtualization/virt-what/default.nix
+++ b/pkgs/applications/virtualization/virt-what/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "virt-what-${version}";
-  version = "1.18";
+  version = "1.19";
 
   src = fetchurl {
     url = "https://people.redhat.com/~rjones/virt-what/files/${name}.tar.gz";
-    sha256 = "1x32h7i6lh823wj97r5rr2hg1v215kqzly14dwg0mwx62j1dshmw";
+    sha256 = "00nhwly5q0ps8yv9cy3c2qp8lfshf3s0kdpwiy5zwk3g77z96rwk";
   };
 
   meta = with lib; {

From 445b85dd1f307e615c46701f79cc2632dcaef4b1 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 07:38:17 -0800
Subject: [PATCH 0702/1129] wcslib: 5.20 -> 6.2

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/wcslib/versions
---
 pkgs/development/libraries/wcslib/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/wcslib/default.nix b/pkgs/development/libraries/wcslib/default.nix
index 636021f1368e..187eed6ae83a 100644
--- a/pkgs/development/libraries/wcslib/default.nix
+++ b/pkgs/development/libraries/wcslib/default.nix
@@ -1,14 +1,14 @@
 { fetchurl,  stdenv, flex }:
 
 stdenv.mkDerivation rec {
-  version = "5.20";
+  version = "6.2";
   name = "wcslib-${version}";
 
   buildInputs = [ flex ];
 
   src = fetchurl {
     url = "ftp://ftp.atnf.csiro.au/pub/software/wcslib/${name}.tar.bz2";
-    sha256 ="1c8g9kv4dxrnawnqi4spi2p10s2xs7x75pdfxhbqxgcc97dkgh0b";
+    sha256 ="01fqckazhbfqqhyr0wd9vcks1m2afmsh83l981alxg2r54jgwkdv";
   };
 
   prePatch = ''

From 125a5e731fc918653ff7abff0e54889154ab4c85 Mon Sep 17 00:00:00 2001
From: Tobias Happ <tobias.happ@gmx.de>
Date: Thu, 8 Nov 2018 16:52:41 +0100
Subject: [PATCH 0703/1129] dwm-status: 1.1.2 -> 1.2.0

---
 pkgs/applications/window-managers/dwm/dwm-status.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/window-managers/dwm/dwm-status.nix b/pkgs/applications/window-managers/dwm/dwm-status.nix
index bf2ab8bbdbe7..028bb8c87ee8 100644
--- a/pkgs/applications/window-managers/dwm/dwm-status.nix
+++ b/pkgs/applications/window-managers/dwm/dwm-status.nix
@@ -3,19 +3,19 @@
 
 rustPlatform.buildRustPackage rec {
   name = "dwm-status-${version}";
-  version = "1.1.2";
+  version = "1.2.0";
 
   src = fetchFromGitHub {
     owner = "Gerschtli";
     repo = "dwm-status";
     rev = version;
-    sha256 = "1nyi0p9snx9hddb4hliihskj4gdp933xs0f8kydyiprckikwiyjk";
+    sha256 = "0bv1jkqkf509akg3dvdy8b2q1kh8i75vw4n6a9rjvslx9s9nh6ca";
   };
 
   nativeBuildInputs = [ makeWrapper pkgconfig ];
   buildInputs = [ dbus gdk_pixbuf libnotify xorg.libX11 ];
 
-  cargoSha256 = "1ngdzzxnv4y6xprmkawf6s2696zgwiwgb6ykj5adb4knlx5c634d";
+  cargoSha256 = "0wbbbk99hxxlrkm389iqni9aqvw2laarwk6hhwsr4ph3y278qhi8";
 
   postInstall = lib.optionalString enableAlsaUtils ''
     wrapProgram $out/bin/dwm-status \

From b25b579e04448afffb602af738286382df5ff6dd Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 08:00:28 -0800
Subject: [PATCH 0704/1129] yank: 1.0.0 -> 1.1.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/yank/versions
---
 pkgs/tools/misc/yank/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/misc/yank/default.nix b/pkgs/tools/misc/yank/default.nix
index eaefd6d61aa6..0e88e79eb1ba 100644
--- a/pkgs/tools/misc/yank/default.nix
+++ b/pkgs/tools/misc/yank/default.nix
@@ -8,7 +8,7 @@ stdenv.mkDerivation rec {
     owner = "mptre";
     repo = "yank";
     rev = "v${meta.version}";
-    sha256 = "03h99i59kq8jlmshfwas1qm4y5ksw9lxaf9kr14l2mp028g7930n";
+    sha256 = "0jhr4ywn5x5s15sczhdyyaqy3xh5z4zsx3g42ma26prpnr4gjczz";
     inherit name;
   };
 
@@ -27,7 +27,7 @@ stdenv.mkDerivation rec {
     '';
     downloadPage = "https://github.com/mptre/yank/releases";
     license = licenses.mit;
-    version = "1.0.0";
+    version = "1.1.0";
     maintainers = [ maintainers.dochang ];
     platforms = platforms.unix;
   };

From 400a40b8c999af6815fe3de32e00a770b6981139 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 08:19:04 -0800
Subject: [PATCH 0705/1129] xidlehook: 0.5.0 -> 0.6.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/xidlehook/versions
---
 pkgs/tools/X11/xidlehook/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/X11/xidlehook/default.nix b/pkgs/tools/X11/xidlehook/default.nix
index 0c64cbefb3ed..5bdab3104a31 100644
--- a/pkgs/tools/X11/xidlehook/default.nix
+++ b/pkgs/tools/X11/xidlehook/default.nix
@@ -3,7 +3,7 @@
 
 rustPlatform.buildRustPackage rec {
   name = "xidlehook-${version}";
-  version = "0.5.0";
+  version = "0.6.0";
 
   doCheck = false;
 
@@ -12,7 +12,7 @@ rustPlatform.buildRustPackage rec {
     repo = "xidlehook";
     rev = version;
 
-    sha256 = "1qrjwk91i31rww5lwgp84hc4h3b1prm60y45jm1f28g2bbv2qy19";
+    sha256 = "0rmc0g5cizyzwpk4yyh7bda70x9ybaivc6iw441k6abxmzbh358g";
   };
 
   cargoBuildFlags = lib.optionals (!stdenv.isLinux) ["--no-default-features" "--features" "pulse"];

From 2a1c0dde8f70ae4cdfa22ea82ad7be7b739fe061 Mon Sep 17 00:00:00 2001
From: Robert Hensing <robert@roberthensing.nl>
Date: Sun, 4 Nov 2018 00:45:14 +0100
Subject: [PATCH 0706/1129] haskellPackages: Add shell completions + improve
 docs

This adds the remaining parts of #42657 on top of #49477, renames the
function to a better name, and improves the docs
---
 .../haskell-modules/configuration-common.nix  | 47 ++++++++++++++-----
 pkgs/development/haskell-modules/lib.nix      | 44 +++++++++++++++--
 pkgs/top-level/all-packages.nix               |  2 +-
 3 files changed, 76 insertions(+), 17 deletions(-)

diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix
index ef55272d6e97..d2b9d566786f 100644
--- a/pkgs/development/haskell-modules/configuration-common.nix
+++ b/pkgs/development/haskell-modules/configuration-common.nix
@@ -248,9 +248,11 @@ self: super: {
   #   This is due to GenList having been removed from generic-random in 1.2.0.0
   # doJailbreak: Can be removed once https://github.com/haskell-nix/hnix/pull/329 is in (5.2 probably)
   #   This is due to hnix currently having an upper bound of <0.5 on deriving-compat, works just fine with our current version 0.5.1 though
-  hnix = dontCheck (doJailbreak (overrideCabal super.hnix (old: {
-    testHaskellDepends = old.testHaskellDepends or [] ++ [ pkgs.nix ];
-  })));
+  hnix =
+    generateOptparseApplicativeCompletion "hnix" (
+    dontCheck (doJailbreak (overrideCabal super.hnix (old: {
+      testHaskellDepends = old.testHaskellDepends or [] ++ [ pkgs.nix ];
+  }))));
 
   # Fails for non-obvious reasons while attempting to use doctest.
   search = dontCheck super.search;
@@ -715,7 +717,9 @@ self: super: {
   });
 
   # The standard libraries are compiled separately
-  idris = doJailbreak (dontCheck super.idris);
+  idris = generateOptparseApplicativeCompletion "idris" (
+    doJailbreak (dontCheck super.idris)
+  );
 
   # https://github.com/bos/math-functions/issues/25
   math-functions = dontCheck super.math-functions;
@@ -1058,7 +1062,20 @@ self: super: {
   vector-algorithms = dontCheck super.vector-algorithms;
 
   # The test suite attempts to use the network.
-  dhall = dontCheck super.dhall;
+  dhall =
+    generateOptparseApplicativeCompletion "dhall" (
+      dontCheck super.dhall
+  );
+
+  dhall-json =
+    generateOptparseApplicativeCompletions ["dhall-to-json" "dhall-to-yaml"] (
+      super.dhall-json
+  );
+
+  dhall-nix =
+    generateOptparseApplicativeCompletion "dhall-to-nix" (
+      super.dhall-nix
+  );
 
   # https://github.com/well-typed/cborg/issues/174
   cborg = doJailbreak super.cborg;
@@ -1079,15 +1096,17 @@ self: super: {
   hpack = super.hpack_0_29_7;
 
   # The test suite does not know how to find the 'cabal2nix' binary.
-  cabal2nix = overrideCabal super.cabal2nix (drv: {
-    preCheck = ''
-      export PATH="$PWD/dist/build/cabal2nix:$PATH"
-      export HOME="$TMPDIR/home"
-    '';
-  });
+  # Also generate shell completions.
+  cabal2nix = generateOptparseApplicativeCompletion "cabal2nix"
+    (overrideCabal super.cabal2nix (drv: {
+      preCheck = ''
+        export PATH="$PWD/dist/build/cabal2nix:$PATH"
+        export HOME="$TMPDIR/home"
+      '';
+    }));
 
   # Break out of "aeson <1.3, temporary <1.3".
-  stack = doJailbreak super.stack;
+  stack = generateOptparseApplicativeCompletion "stack" (doJailbreak super.stack);
 
   # https://github.com/pikajude/stylish-cabal/issues/11
   stylish-cabal = super.stylish-cabal.override { hspec = self.hspec_2_4_8; hspec-core = self.hspec-core_2_4_8; };
@@ -1130,4 +1149,8 @@ self: super: {
 
   # https://github.com/snapframework/xmlhtml/pull/37
   xmlhtml = doJailbreak super.xmlhtml;
+
+  # Generate shell completions
+  purescript = generateOptparseApplicativeCompletion "purs" super.purescript;
+
 } // import ./configuration-tensorflow.nix {inherit pkgs haskellLib;} self super
diff --git a/pkgs/development/haskell-modules/lib.nix b/pkgs/development/haskell-modules/lib.nix
index 10edf69478b0..a93637623d3e 100644
--- a/pkgs/development/haskell-modules/lib.nix
+++ b/pkgs/development/haskell-modules/lib.nix
@@ -408,10 +408,24 @@ rec {
       in
         builtins.listToAttrs (map toKeyVal haskellPaths);
 
-  # Modify a Haskell package to add completion scripts for the given executable
-  # produced by it. These completion scripts will be picked up automatically if
-  # the resulting derivation is installed, e.g. by `nix-env -i`.
-  addOptparseApplicativeCompletionScripts = exeName: pkg: overrideCabal pkg (drv: {
+  addOptparseApplicativeCompletionScripts = exeName: pkg:
+    builtins.trace "addOptparseApplicativeCompletionScripts is deprecated in favor of generateOptparseApplicativeCompletion. Please change ${pkg.name} to use the latter or its plural form."
+    (generateOptparseApplicativeCompletion exeName pkg);
+
+  /*
+    Modify a Haskell package to add shell completion scripts for the
+    given executable produced by it. These completion scripts will be
+    picked up automatically if the resulting derivation is installed,
+    e.g. by `nix-env -i`.
+
+    Invocation:
+      generateOptparseApplicativeCompletions command pkg
+
+
+      command: name of an executable
+          pkg: Haskell package that builds the executables
+  */
+  generateOptparseApplicativeCompletion = exeName: pkg: overrideCabal pkg (drv: {
     postInstall = (drv.postInstall or "") + ''
       bashCompDir="$out/share/bash-completion/completions"
       zshCompDir="$out/share/zsh/vendor-completions"
@@ -420,6 +434,28 @@ rec {
       "$out/bin/${exeName}" --bash-completion-script "$out/bin/${exeName}" >"$bashCompDir/${exeName}"
       "$out/bin/${exeName}" --zsh-completion-script "$out/bin/${exeName}" >"$zshCompDir/_${exeName}"
       "$out/bin/${exeName}" --fish-completion-script "$out/bin/${exeName}" >"$fishCompDir/${exeName}.fish"
+
+      # Sanity check
+      grep -F ${exeName} <$bashCompDir/${exeName} >/dev/null || {
+        echo 'Could not find ${exeName} in completion script.'
+        exit 1
+      }
     '';
   });
+
+  /*
+    Modify a Haskell package to add shell completion scripts for the
+    given executables produced by it. These completion scripts will be
+    picked up automatically if the resulting derivation is installed,
+    e.g. by `nix-env -i`.
+
+    Invocation:
+      generateOptparseApplicativeCompletions commands pkg
+
+
+     commands: name of an executable
+          pkg: Haskell package that builds the executables
+  */
+  generateOptparseApplicativeCompletions = commands: pkg:
+    pkgs.lib.foldr generateOptparseApplicativeCompletion pkg commands;
 }
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index a2e93f038c38..dd963b6ee010 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -1001,7 +1001,7 @@ with pkgs;
 
   cue2pops = callPackage ../tools/cd-dvd/cue2pops { };
 
-  cabal2nix = haskell.lib.overrideCabal (haskell.lib.addOptparseApplicativeCompletionScripts "cabal2nix" haskellPackages.cabal2nix) (drv: {
+  cabal2nix = haskell.lib.overrideCabal (haskell.lib.generateOptparseApplicativeCompletion "cabal2nix" haskellPackages.cabal2nix) (drv: {
     isLibrary = false;
     enableSharedExecutables = false;
     executableToolDepends = (drv.executableToolDepends or []) ++ [ makeWrapper ];

From 7f08b1944b6739cd19a7c953133443e4ba292f1f Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Tue, 6 Nov 2018 13:42:28 +0100
Subject: [PATCH 0707/1129] hackage-packages.nix: automatic Haskell package set
 update

This update was generated by hackage2nix v2.11.1-4-g8927afe from Hackage revision
https://github.com/commercialhaskell/all-cabal-hashes/commit/4cdc5794ea17c18c30810260493e80af8dfc791d.

Fixes https://github.com/NixOS/nixpkgs/issues/49709.
---
 .../haskell-modules/hackage-packages.nix      | 937 ++++++++++++++----
 1 file changed, 758 insertions(+), 179 deletions(-)

diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix
index a6966e9558b3..e0324f973b7a 100644
--- a/pkgs/development/haskell-modules/hackage-packages.nix
+++ b/pkgs/development/haskell-modules/hackage-packages.nix
@@ -8622,6 +8622,39 @@ self: {
        license = stdenv.lib.licenses.lgpl21;
      }) {};
 
+  "HTF_0_13_2_5" = callPackage
+    ({ mkDerivation, aeson, aeson-pretty, array, base
+     , base64-bytestring, bytestring, containers, cpphs, Diff, directory
+     , filepath, haskell-src, HUnit, lifted-base, monad-control, mtl
+     , old-time, pretty, process, QuickCheck, random, regex-compat
+     , template-haskell, temporary, text, time, unix
+     , unordered-containers, vector, xmlgen
+     }:
+     mkDerivation {
+       pname = "HTF";
+       version = "0.13.2.5";
+       sha256 = "1kmf95y4vijdiih27xa35acl02dsxqnd9qa56z1waki5qqiz6nin";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         aeson array base base64-bytestring bytestring containers cpphs Diff
+         directory haskell-src HUnit lifted-base monad-control mtl old-time
+         pretty process QuickCheck random regex-compat text time unix vector
+         xmlgen
+       ];
+       executableHaskellDepends = [
+         array base cpphs directory HUnit mtl old-time random text
+       ];
+       testHaskellDepends = [
+         aeson aeson-pretty base bytestring directory filepath HUnit mtl
+         process random regex-compat template-haskell temporary text
+         unordered-containers
+       ];
+       description = "The Haskell Test Framework";
+       license = stdenv.lib.licenses.lgpl21;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "HTTP" = callPackage
     ({ mkDerivation, array, base, bytestring, case-insensitive, conduit
      , conduit-extra, deepseq, http-types, httpd-shed, HUnit, mtl
@@ -12272,8 +12305,8 @@ self: {
      }:
      mkDerivation {
        pname = "MiniAgda";
-       version = "0.2018.11.4";
-       sha256 = "179f7kf355bkmpz1xjlf072axwsixjafh77m0anqx6q3g7qd0b36";
+       version = "0.2018.11.6";
+       sha256 = "0zv8n80qmdykj40nqbrxb29grmy4kzjfhjxbyy3d7ylb64rq514n";
        isLibrary = false;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -18273,6 +18306,18 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "TypeCompose_0_9_14" = callPackage
+    ({ mkDerivation, base, base-orphans }:
+     mkDerivation {
+       pname = "TypeCompose";
+       version = "0.9.14";
+       sha256 = "0msss17lrya6y5xfvxl41xsqs6yr09iw6m1px4xlwin72xwly0sn";
+       libraryHaskellDepends = [ base base-orphans ];
+       description = "Type composition classes & instances";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "TypeIlluminator" = callPackage
     ({ mkDerivation, base, haskell98 }:
      mkDerivation {
@@ -20420,6 +20465,8 @@ self: {
        pname = "accelerate-llvm-ptx";
        version = "1.2.0.0";
        sha256 = "1rh0kq10mwn4zd8f5sp19pah2hmmcansaqqssz79183znzfiviz5";
+       revision = "1";
+       editedCabalFile = "1fcgs1wcknqnj7wr907ixwlrzwgfnl1bmyr5j4d58bm2xrspid7m";
        libraryHaskellDepends = [
          accelerate accelerate-llvm base bytestring containers cuda deepseq
          directory dlist file-embed filepath hashable llvm-hs llvm-hs-pure
@@ -30847,15 +30894,15 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
-  "attoparsec-uri_0_0_6" = callPackage
+  "attoparsec-uri_0_0_7" = callPackage
     ({ mkDerivation, attoparsec, attoparsec-ip, base, bytedump, ip
      , QuickCheck, quickcheck-instances, strict, tasty, tasty-quickcheck
      , text, vector
      }:
      mkDerivation {
        pname = "attoparsec-uri";
-       version = "0.0.6";
-       sha256 = "046aq5c56p51nxyrazv3sv7m49c214gc673cwyic75vfykgbk20b";
+       version = "0.0.7";
+       sha256 = "0p3j4m5ps4j8phm2c00rk6m06vidckf14fy50xgcq2zr8b1lk79n";
        libraryHaskellDepends = [
          attoparsec attoparsec-ip base bytedump ip QuickCheck
          quickcheck-instances strict text vector
@@ -34594,6 +34641,8 @@ self: {
        pname = "bhoogle";
        version = "0.1.3.5";
        sha256 = "1gig9w1k1w2kw6y3wx6ckmc7kamwwzzq7mbaxil0rmb5ms0p1rf9";
+       revision = "1";
+       editedCabalFile = "006nqwl03lrs7nsly7l3kl9wfwabflkkxy4g34sbkik88ihipw56";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
@@ -40076,8 +40125,8 @@ self: {
      }:
      mkDerivation {
        pname = "bugsnag-haskell";
-       version = "0.0.2.1";
-       sha256 = "09vvckg6advf47ciq3cv2g06g13d2az1kinby5fpfz1wma7s1zjg";
+       version = "0.0.2.2";
+       sha256 = "1fx9f0ddx8il141rhqxb81vms0nxkyckwx72cmjq2j0nwjhhh89l";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -40482,19 +40531,18 @@ self: {
 
   "butterflies" = callPackage
     ({ mkDerivation, base, bytestring, gl-capture, GLUT, OpenGLRaw
-     , OpenGLRaw21, repa, repa-devil
+     , repa, repa-devil
      }:
      mkDerivation {
        pname = "butterflies";
-       version = "0.3.0.1";
-       sha256 = "0dgjjfd4lna6kvqbckx378ssxc5mm9xyvdkwd3r197199rmxq733";
+       version = "0.3.0.2";
+       sha256 = "0syykvrgq6i0zxy1pn934j1r9glv4yypva1mfkn0vc0nikh9fm31";
        isLibrary = true;
        isExecutable = true;
        enableSeparateDataOutput = true;
        libraryHaskellDepends = [ base ];
        executableHaskellDepends = [
-         base bytestring gl-capture GLUT OpenGLRaw OpenGLRaw21 repa
-         repa-devil
+         base bytestring gl-capture GLUT OpenGLRaw repa repa-devil
        ];
        description = "butterfly tilings";
        license = stdenv.lib.licenses.gpl3;
@@ -45598,6 +45646,26 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "cheapskate_0_1_1_1" = callPackage
+    ({ mkDerivation, base, blaze-html, bytestring, containers
+     , data-default, deepseq, mtl, syb, text, uniplate, xss-sanitize
+     }:
+     mkDerivation {
+       pname = "cheapskate";
+       version = "0.1.1.1";
+       sha256 = "0qnyd8bni2rby6b02ff4bvfdhm1hwc8vzpmnms84jgrlg1lly3fm";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         base blaze-html containers data-default deepseq mtl syb text
+         uniplate xss-sanitize
+       ];
+       executableHaskellDepends = [ base blaze-html bytestring text ];
+       description = "Experimental markdown processor";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "cheapskate-highlight" = callPackage
     ({ mkDerivation, base, blaze-html, cheapskate, highlighting-kate
      , text
@@ -49712,6 +49780,8 @@ self: {
        pname = "combinat";
        version = "0.2.9.0";
        sha256 = "1y617qyhqh2k6d51j94c0xnj54i7b86d87n0j12idxlkaiv4j5sw";
+       revision = "1";
+       editedCabalFile = "0yjvvxfmyzjhh0q050cc2wkhaahzixsw7hf27n8dky3n4cxd5bix";
        libraryHaskellDepends = [
          array base containers random transformers
        ];
@@ -54132,6 +54202,8 @@ self: {
        pname = "country";
        version = "0.1.6";
        sha256 = "0a4r2jnp15xy18s6xpd4p10cgq3hd8qqzhy5lakmzymivwq6xcq9";
+       revision = "1";
+       editedCabalFile = "04a2s0zlm4garihnm3xl9avf88vjnbvpsyb2ckk3z7ydjq0y3938";
        libraryHaskellDepends = [
          aeson attoparsec base bytestring deepseq ghc-prim hashable
          primitive scientific text unordered-containers
@@ -63423,8 +63495,8 @@ self: {
        pname = "dictionary-sharing";
        version = "0.1.0.0";
        sha256 = "00aspv943qdqhlk39mbk00kb1dsa5r0caj8sslrn81fnsn252fwc";
-       revision = "2";
-       editedCabalFile = "0pxbqck3fkfqrg51fkkplcmqxn9vllkc5ff83l282gandqv4glvi";
+       revision = "3";
+       editedCabalFile = "1mn7jcc7h3b8f1pn9zigqp6mc2n0qb66lms5qnrx4zswdv5w9439";
        libraryHaskellDepends = [ base containers ];
        description = "Sharing/memoization of class members";
        license = stdenv.lib.licenses.bsd3;
@@ -63592,6 +63664,8 @@ self: {
        pname = "diffmap";
        version = "0.1.0.0";
        sha256 = "0i6dyvp8ds1wz9jm7nva076pc18mz24fiz50gqgq3xv76aghl0i0";
+       revision = "1";
+       editedCabalFile = "0gkcsdf9jrfs5lwhayl808flwlv446mixdn3n91v5gsxbcqqrsi7";
        libraryHaskellDepends = [ base containers ];
        description = "diff on maps";
        license = stdenv.lib.licenses.bsd3;
@@ -73519,7 +73593,7 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
-  "extensible_0_4_10" = callPackage
+  "extensible_0_4_10_1" = callPackage
     ({ mkDerivation, aeson, base, bytestring, cassava, comonad
      , constraints, deepseq, exceptions, ghc-prim, hashable, lens
      , monad-skeleton, mtl, prettyprinter, primitive, profunctors
@@ -73529,8 +73603,8 @@ self: {
      }:
      mkDerivation {
        pname = "extensible";
-       version = "0.4.10";
-       sha256 = "012xryq2jz7k6dmrzjh8j3yn9ggyna63vppi6xwdqjxks9xms2zq";
+       version = "0.4.10.1";
+       sha256 = "009z0grpjnnmnsc887k6vgfz5w55mniax25dl4ispj1nq74djksb";
        libraryHaskellDepends = [
          aeson base bytestring cassava comonad constraints deepseq
          exceptions ghc-prim hashable monad-skeleton mtl prettyprinter
@@ -73586,18 +73660,18 @@ self: {
     ({ mkDerivation, async, base, containers, data-default, deepseq
      , directory, enclosed-exceptions, extensible-effects, filepath
      , HUnit, lens, monad-control, mtl, parallel, process, QuickCheck
-     , stm, tasty, tasty-discover, tasty-hunit, time
+     , stm, tasty, tasty-discover, tasty-hunit, time, transformers-base
      }:
      mkDerivation {
        pname = "extensible-effects-concurrent";
-       version = "0.9.2.2";
-       sha256 = "0zw8qvsiblsms9cpmwlg70ix7qlmpgxhm2jdp16j04rvl93zaykw";
+       version = "0.11.1";
+       sha256 = "0jpf8rp2dfa6ggvv076fyipbyr97dq3lxwrxdbffsnjviz6232wd";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
          async base containers data-default deepseq enclosed-exceptions
          extensible-effects filepath lens monad-control mtl parallel process
-         QuickCheck stm time
+         QuickCheck stm time transformers-base
        ];
        executableHaskellDepends = [
          base data-default deepseq directory extensible-effects filepath
@@ -74117,20 +74191,18 @@ self: {
      }) {};
 
   "fast-arithmetic" = callPackage
-    ({ mkDerivation, arithmoi, base, combinat-compat
-     , composition-prelude, criterion, gmpint, hspec, QuickCheck
+    ({ mkDerivation, arithmoi, base, combinat, criterion, hgmp, hspec
+     , QuickCheck
      }:
      mkDerivation {
        pname = "fast-arithmetic";
-       version = "0.6.3.0";
-       sha256 = "0f02fi63xq0x1r5qqagwzz6wbsxblz99jm2g994gs13ba11abix1";
-       libraryHaskellDepends = [ base composition-prelude gmpint ];
-       testHaskellDepends = [
-         arithmoi base combinat-compat hspec QuickCheck
-       ];
-       benchmarkHaskellDepends = [
-         arithmoi base combinat-compat criterion
-       ];
+       version = "0.6.4.1";
+       sha256 = "0rnbqj495lj2c5xmk35iwhlx6h4m14b35hqz73adspm4ryym00b3";
+       revision = "2";
+       editedCabalFile = "0hla00m1v9sk480yif3kgi2zzqq7snfz6san3yznigpxqzq5rczm";
+       libraryHaskellDepends = [ base hgmp ];
+       testHaskellDepends = [ arithmoi base combinat hspec QuickCheck ];
+       benchmarkHaskellDepends = [ arithmoi base combinat criterion ];
        description = "Fast functions on integers";
        license = stdenv.lib.licenses.bsd3;
        hydraPlatforms = stdenv.lib.platforms.none;
@@ -77037,21 +77109,20 @@ self: {
 
   "flat" = callPackage
     ({ mkDerivation, array, base, bytestring, containers, deepseq
-     , dlist, doctest, filemanip, ghc-prim, mono-traversable, pretty
-     , primitive, quickcheck-instances, tasty, tasty-hunit
-     , tasty-quickcheck, text, vector
+     , dlist, ghc-prim, mono-traversable, pretty, primitive, QuickCheck
+     , tasty, tasty-hunit, tasty-quickcheck, text, vector
      }:
      mkDerivation {
        pname = "flat";
-       version = "0.3.2";
-       sha256 = "0489w132m6j47m0jf1svwvql3fmw58iz9l2rqnhn4c5gg91wj53q";
+       version = "0.3.4";
+       sha256 = "1v7c5nrvhys4flq5xacws59w25qzbb6mvwhvk4f6jb6impmqnwyw";
        libraryHaskellDepends = [
          array base bytestring containers deepseq dlist ghc-prim
          mono-traversable pretty primitive text vector
        ];
        testHaskellDepends = [
-         base bytestring containers deepseq doctest filemanip ghc-prim
-         quickcheck-instances tasty tasty-hunit tasty-quickcheck text
+         array base bytestring containers deepseq ghc-prim QuickCheck tasty
+         tasty-hunit tasty-quickcheck text
        ];
        description = "Principled and efficient bit-oriented binary serialization";
        license = stdenv.lib.licenses.bsd3;
@@ -77931,6 +78002,30 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "focuslist" = callPackage
+    ({ mkDerivation, base, Cabal, cabal-doctest, containers, doctest
+     , genvalidity-containers, genvalidity-hspec, hedgehog, lens
+     , mono-traversable, QuickCheck, tasty, tasty-hedgehog, tasty-hspec
+     , template-haskell
+     }:
+     mkDerivation {
+       pname = "focuslist";
+       version = "0.1.0.0";
+       sha256 = "1przphis37yh06q2scqh2njcrvgynh0p9km52f4a5yvmnxvaqs8n";
+       isLibrary = true;
+       isExecutable = true;
+       setupHaskellDepends = [ base Cabal cabal-doctest ];
+       libraryHaskellDepends = [
+         base containers lens mono-traversable QuickCheck
+       ];
+       testHaskellDepends = [
+         base doctest genvalidity-containers genvalidity-hspec hedgehog lens
+         QuickCheck tasty tasty-hedgehog tasty-hspec template-haskell
+       ];
+       description = "Lists with a focused element";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "fold-debounce" = callPackage
     ({ mkDerivation, base, data-default-class, hspec, stm, stm-delay
      , time
@@ -81594,8 +81689,8 @@ self: {
     ({ mkDerivation, base, GLUT, OpenGLRaw, Vec }:
      mkDerivation {
        pname = "gearbox";
-       version = "1.0.0.5";
-       sha256 = "01mzvbmzq7bl665xy5znqcivxp0b6x6wcrzq8r6kzsym5izm9qz4";
+       version = "1.0.0.6";
+       sha256 = "0f8zljk145yq3lq3ngiana5g39ybqijsv7n3b11wdr7mzymdgyw2";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [ base GLUT OpenGLRaw Vec ];
@@ -82625,12 +82720,12 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
-  "genvalidity_0_6_1_0" = callPackage
+  "genvalidity_0_7_0_0" = callPackage
     ({ mkDerivation, base, hspec, hspec-core, QuickCheck, validity }:
      mkDerivation {
        pname = "genvalidity";
-       version = "0.6.1.0";
-       sha256 = "0wjqwn040yn7wpmcmhfp5slvyspal104p5wgkwwi40ykaj2zhayg";
+       version = "0.7.0.0";
+       sha256 = "1bjsqqyr1n306icfdl8sh3amqq95zpr5hawwbv46nbf0rxci88w1";
        libraryHaskellDepends = [ base QuickCheck validity ];
        testHaskellDepends = [ base hspec hspec-core QuickCheck ];
        description = "Testing utilities for the validity library";
@@ -82678,21 +82773,21 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
-  "genvalidity-bytestring_0_3_0_0" = callPackage
+  "genvalidity-bytestring_0_3_0_1" = callPackage
     ({ mkDerivation, base, bytestring, deepseq, genvalidity
      , genvalidity-hspec, hspec, QuickCheck, validity
      , validity-bytestring
      }:
      mkDerivation {
        pname = "genvalidity-bytestring";
-       version = "0.3.0.0";
-       sha256 = "1jmy41mqjh3zj512fjikn6vqjvx81cdvi9llc9f0yp2h2rkmw4hf";
+       version = "0.3.0.1";
+       sha256 = "1jc3hd5aad5vblb1mmb1xzgfdcnk37w50vxyznr1m16rdfg1xrz8";
        libraryHaskellDepends = [
          base bytestring genvalidity QuickCheck validity validity-bytestring
        ];
        testHaskellDepends = [
          base bytestring deepseq genvalidity genvalidity-hspec hspec
-         QuickCheck
+         QuickCheck validity
        ];
        description = "GenValidity support for ByteString";
        license = stdenv.lib.licenses.mit;
@@ -82717,6 +82812,25 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "genvalidity-containers_0_5_1_1" = callPackage
+    ({ mkDerivation, base, containers, genvalidity, genvalidity-hspec
+     , hspec, QuickCheck, validity, validity-containers
+     }:
+     mkDerivation {
+       pname = "genvalidity-containers";
+       version = "0.5.1.1";
+       sha256 = "1z7bmbwi07nylkgm3dysmnv57z1iww2sjy2zv88jpg6nvq9r9ffg";
+       libraryHaskellDepends = [
+         base containers genvalidity QuickCheck validity validity-containers
+       ];
+       testHaskellDepends = [
+         base containers genvalidity genvalidity-hspec hspec validity
+       ];
+       description = "GenValidity support for containers";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "genvalidity-hspec" = callPackage
     ({ mkDerivation, base, doctest, genvalidity, genvalidity-property
      , hspec, hspec-core, QuickCheck, transformers, validity
@@ -82736,6 +82850,27 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "genvalidity-hspec_0_6_2_1" = callPackage
+    ({ mkDerivation, base, doctest, genvalidity, genvalidity-property
+     , hspec, hspec-core, QuickCheck, transformers, validity
+     }:
+     mkDerivation {
+       pname = "genvalidity-hspec";
+       version = "0.6.2.1";
+       sha256 = "100mjmbjfzy431a52yqkq2rja0mb5zw8dbkpfbfy17rdkwwx2yn1";
+       libraryHaskellDepends = [
+         base genvalidity genvalidity-property hspec hspec-core QuickCheck
+         transformers validity
+       ];
+       testHaskellDepends = [
+         base doctest genvalidity genvalidity-property hspec hspec-core
+         QuickCheck validity
+       ];
+       description = "Standard spec's for GenValidity instances";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "genvalidity-hspec-aeson" = callPackage
     ({ mkDerivation, aeson, base, bytestring, deepseq, doctest
      , genvalidity, genvalidity-aeson, genvalidity-hspec
@@ -82757,6 +82892,29 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "genvalidity-hspec-aeson_0_3_0_1" = callPackage
+    ({ mkDerivation, aeson, base, bytestring, deepseq, doctest
+     , genvalidity, genvalidity-aeson, genvalidity-hspec
+     , genvalidity-property, genvalidity-text, hspec, QuickCheck, text
+     , validity
+     }:
+     mkDerivation {
+       pname = "genvalidity-hspec-aeson";
+       version = "0.3.0.1";
+       sha256 = "0x5ja3d6vab2gmcqif3cvvbvmdpxp4hrc4ygzns5pw91nlrf5lm2";
+       libraryHaskellDepends = [
+         aeson base bytestring deepseq genvalidity genvalidity-hspec hspec
+         QuickCheck
+       ];
+       testHaskellDepends = [
+         aeson base doctest genvalidity genvalidity-aeson genvalidity-hspec
+         genvalidity-property genvalidity-text hspec text validity
+       ];
+       description = "Standard spec's for aeson-related instances";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "genvalidity-hspec-binary" = callPackage
     ({ mkDerivation, base, binary, deepseq, doctest, genvalidity
      , genvalidity-hspec, hspec, QuickCheck
@@ -82773,6 +82931,26 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "genvalidity-hspec-binary_0_2_0_3" = callPackage
+    ({ mkDerivation, base, binary, deepseq, doctest, genvalidity
+     , genvalidity-hspec, genvalidity-property, hspec, QuickCheck
+     , validity
+     }:
+     mkDerivation {
+       pname = "genvalidity-hspec-binary";
+       version = "0.2.0.3";
+       sha256 = "1am9brcf3wh2fdrfwlkcqiamwc2zlcw3lihpcqgz0sm3jhka56xr";
+       libraryHaskellDepends = [
+         base binary deepseq genvalidity genvalidity-hspec hspec QuickCheck
+       ];
+       testHaskellDepends = [
+         base doctest genvalidity genvalidity-property hspec validity
+       ];
+       description = "Standard spec's for binary-related Instances";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "genvalidity-hspec-cereal" = callPackage
     ({ mkDerivation, base, cereal, deepseq, doctest, genvalidity
      , genvalidity-hspec, hspec, QuickCheck
@@ -82789,6 +82967,26 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "genvalidity-hspec-cereal_0_2_0_3" = callPackage
+    ({ mkDerivation, base, cereal, deepseq, doctest, genvalidity
+     , genvalidity-hspec, genvalidity-property, hspec, QuickCheck
+     , validity
+     }:
+     mkDerivation {
+       pname = "genvalidity-hspec-cereal";
+       version = "0.2.0.3";
+       sha256 = "11bii2nf52jfarfb5jzgj6pmsz59mcvivb8nxc90z97gdd5w6zll";
+       libraryHaskellDepends = [
+         base cereal deepseq genvalidity genvalidity-hspec hspec QuickCheck
+       ];
+       testHaskellDepends = [
+         base doctest genvalidity genvalidity-property hspec validity
+       ];
+       description = "Standard spec's for cereal-related instances";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "genvalidity-hspec-hashable" = callPackage
     ({ mkDerivation, base, doctest, genvalidity, genvalidity-hspec
      , genvalidity-property, hashable, hspec, hspec-core, QuickCheck
@@ -82810,19 +83008,42 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "genvalidity-hspec-hashable_0_2_0_3" = callPackage
+    ({ mkDerivation, base, doctest, genvalidity, genvalidity-hspec
+     , genvalidity-property, hashable, hspec, hspec-core, QuickCheck
+     , validity
+     }:
+     mkDerivation {
+       pname = "genvalidity-hspec-hashable";
+       version = "0.2.0.3";
+       sha256 = "0lb1aiv07fbbkyhh8ig2lhqgm9yibrny2bw9qwbdkwwsi6hk4566";
+       libraryHaskellDepends = [
+         base genvalidity genvalidity-hspec genvalidity-property hashable
+         hspec QuickCheck validity
+       ];
+       testHaskellDepends = [
+         base doctest genvalidity genvalidity-hspec genvalidity-property
+         hashable hspec hspec-core QuickCheck validity
+       ];
+       description = "Standard spec's for Hashable instances";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "genvalidity-hspec-optics" = callPackage
     ({ mkDerivation, base, doctest, genvalidity, genvalidity-hspec
-     , hspec, microlens, QuickCheck
+     , genvalidity-property, hspec, microlens, QuickCheck, validity
      }:
      mkDerivation {
        pname = "genvalidity-hspec-optics";
-       version = "0.1.1.0";
-       sha256 = "13nspyfd8apvqf30dr8zz027d60qh2f25rc6gk8fliiq626ajz17";
+       version = "0.1.1.1";
+       sha256 = "121pjin5g1mgdqjydvj68639d5f17i3ibxrl8iiigp4q3xywp4ha";
        libraryHaskellDepends = [
          base genvalidity genvalidity-hspec hspec microlens QuickCheck
        ];
        testHaskellDepends = [
-         base doctest genvalidity genvalidity-hspec hspec microlens
+         base doctest genvalidity genvalidity-hspec genvalidity-property
+         hspec microlens validity
        ];
        description = "Standard spec's for optics";
        license = stdenv.lib.licenses.mit;
@@ -82887,6 +83108,23 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "genvalidity-property_0_3_0_0" = callPackage
+    ({ mkDerivation, base, directory, doctest, filepath, genvalidity
+     , hspec, QuickCheck, validity
+     }:
+     mkDerivation {
+       pname = "genvalidity-property";
+       version = "0.3.0.0";
+       sha256 = "03cpmkqmfqypj9kydrdzs0pyix0ffwrlx8idzvgyrqiyhg03rsis";
+       libraryHaskellDepends = [
+         base genvalidity hspec QuickCheck validity
+       ];
+       testHaskellDepends = [ base directory doctest filepath ];
+       description = "Standard properties for functions on `Validity` types";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "genvalidity-scientific" = callPackage
     ({ mkDerivation, base, genvalidity, genvalidity-hspec, hspec
      , QuickCheck, scientific, validity, validity-scientific
@@ -82959,6 +83197,28 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "genvalidity-unordered-containers_0_2_0_4" = callPackage
+    ({ mkDerivation, base, genvalidity, genvalidity-hspec, hashable
+     , hspec, QuickCheck, unordered-containers, validity
+     , validity-unordered-containers
+     }:
+     mkDerivation {
+       pname = "genvalidity-unordered-containers";
+       version = "0.2.0.4";
+       sha256 = "0rkvwm5imbgl8cx5pdk16dc4wzhcndw6g3wwxs0blykiri32wl3q";
+       libraryHaskellDepends = [
+         base genvalidity hashable QuickCheck unordered-containers validity
+         validity-unordered-containers
+       ];
+       testHaskellDepends = [
+         base genvalidity genvalidity-hspec hspec unordered-containers
+         validity
+       ];
+       description = "GenValidity support for unordered-containers";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "genvalidity-uuid" = callPackage
     ({ mkDerivation, base, genvalidity, genvalidity-hspec, hspec
      , QuickCheck, uuid, validity, validity-uuid
@@ -82995,6 +83255,25 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "genvalidity-vector_0_2_0_3" = callPackage
+    ({ mkDerivation, base, genvalidity, genvalidity-hspec, hspec
+     , QuickCheck, validity, validity-vector, vector
+     }:
+     mkDerivation {
+       pname = "genvalidity-vector";
+       version = "0.2.0.3";
+       sha256 = "161w5shgj1k8691mmi9ddhxrnrqhsp502ywln2h0sk55zqcj1i5k";
+       libraryHaskellDepends = [
+         base genvalidity QuickCheck validity validity-vector vector
+       ];
+       testHaskellDepends = [
+         base genvalidity genvalidity-hspec hspec vector
+       ];
+       description = "GenValidity support for vector";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "geo-resolver" = callPackage
     ({ mkDerivation, aeson, base, base64-bytestring, blaze-builder
      , bytestring, http-conduit, http-types, HUnit, QuickCheck
@@ -84201,6 +84480,21 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "ghc-syntax-highlighter_0_0_3_0" = callPackage
+    ({ mkDerivation, base, ghc, hspec, hspec-discover, text }:
+     mkDerivation {
+       pname = "ghc-syntax-highlighter";
+       version = "0.0.3.0";
+       sha256 = "077cvrx25qdl04qgp3wl7c3jxrakw1k873dwgybfwkhgfj2g8dx1";
+       enableSeparateDataOutput = true;
+       libraryHaskellDepends = [ base ghc text ];
+       testHaskellDepends = [ base hspec text ];
+       testToolDepends = [ hspec-discover ];
+       description = "Syntax highlighter for Haskell using lexer of GHC itself";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "ghc-tcplugins-extra" = callPackage
     ({ mkDerivation, base, ghc }:
      mkDerivation {
@@ -86476,6 +86770,30 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "github-release_1_2_3" = callPackage
+    ({ mkDerivation, aeson, base, bytestring, http-client
+     , http-client-tls, http-types, mime-types, optparse-generic, text
+     , unordered-containers, uri-templater
+     }:
+     mkDerivation {
+       pname = "github-release";
+       version = "1.2.3";
+       sha256 = "14jb82gybm2zwri05bqxsibwr29lhghcaj3n0171nbndqs0dyl0y";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         aeson base bytestring http-client http-client-tls http-types
+         mime-types optparse-generic text unordered-containers uri-templater
+       ];
+       executableHaskellDepends = [
+         aeson base bytestring http-client http-client-tls http-types
+         mime-types optparse-generic text unordered-containers uri-templater
+       ];
+       description = "Upload files to GitHub releases";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "github-tools" = callPackage
     ({ mkDerivation, base, bytestring, containers, exceptions, github
      , groom, html, http-client, http-client-tls, monad-parallel
@@ -89709,6 +90027,20 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "google-isbn" = callPackage
+    ({ mkDerivation, aeson, base, bytestring, conduit, conduit-extra
+     , http-conduit, text
+     }:
+     mkDerivation {
+       pname = "google-isbn";
+       version = "1.0.2";
+       sha256 = "1vba9czx73b9xqr3cp5gz9r7qp458wdzzb4sqds4hzridchjf3ry";
+       libraryHaskellDepends = [
+         aeson base bytestring conduit conduit-extra http-conduit text
+       ];
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "google-mail-filters" = callPackage
     ({ mkDerivation, base, containers, google-search, text, time
      , xml-conduit
@@ -90995,8 +91327,8 @@ self: {
     ({ mkDerivation, base, containers, json, text }:
      mkDerivation {
        pname = "graphql-w-persistent";
-       version = "0.1.0.7";
-       sha256 = "13fbx5vzg2fq9883hdf8djbc47lyia6n4sshwz3dhg5bjpni7l1x";
+       version = "0.3.0.0";
+       sha256 = "11mf250vg2yvknnvbsc7h7m5xfxfsm4mia7by735ndhxzxb65jy9";
        libraryHaskellDepends = [ base containers json text ];
        description = "Haskell GraphQL query parser-interpreter-data processor";
        license = stdenv.lib.licenses.isc;
@@ -92470,8 +92802,8 @@ self: {
      }) {gtk-mac-integration-gtk3 = null;};
 
   "gtkglext" = callPackage
-    ({ mkDerivation, base, Cabal, glib, gtk, gtk2hs-buildtools
-     , gtkglext, pango
+    ({ mkDerivation, base, Cabal, glib, gtk, gtk2, gtk2hs-buildtools
+     , gtkglext, libGLU, libICE, libSM, libXmu, libXt, pango
      }:
      mkDerivation {
        pname = "gtkglext";
@@ -92480,12 +92812,16 @@ self: {
        enableSeparateDataOutput = true;
        setupHaskellDepends = [ base Cabal gtk2hs-buildtools ];
        libraryHaskellDepends = [ base glib gtk pango ];
+       librarySystemDepends = [ gtk2 libGLU libICE libSM libXmu libXt ];
        libraryPkgconfigDepends = [ gtkglext ];
        libraryToolDepends = [ gtk2hs-buildtools ];
        description = "Binding to the GTK+ OpenGL Extension";
        license = stdenv.lib.licenses.lgpl21;
        hydraPlatforms = stdenv.lib.platforms.none;
-     }) {inherit (pkgs.gnome2) gtkglext;};
+     }) {inherit (pkgs) gtk2; inherit (pkgs.gnome2) gtkglext; 
+         inherit (pkgs) libGLU; inherit (pkgs.xorg) libICE; 
+         inherit (pkgs.xorg) libSM; inherit (pkgs.xorg) libXmu; 
+         inherit (pkgs.xorg) libXt;};
 
   "gtkimageview" = callPackage
     ({ mkDerivation, array, base, containers, glib, gtk
@@ -98534,8 +98870,8 @@ self: {
      }:
      mkDerivation {
        pname = "haskell-names";
-       version = "0.9.3";
-       sha256 = "1gr5sxjjkf7faiyc4y1sbiv06c5fiz7w5s8sxz7hh5k54w8nhs4c";
+       version = "0.9.4";
+       sha256 = "0dbf5rxysm57jn018wd3dfz3m621n0347mbpgv7q2yb77cwrlg8y";
        enableSeparateDataOutput = true;
        libraryHaskellDepends = [
          aeson base bytestring containers data-lens-light filepath
@@ -100213,8 +100549,8 @@ self: {
      }:
      mkDerivation {
        pname = "haskoin-core";
-       version = "0.8.1";
-       sha256 = "0wlsxxrb4a7dn19412gxkwlayrjzpawkpxxy7mww279i159zl7k8";
+       version = "0.8.2";
+       sha256 = "1scd87ivzmrf8ar44wkijcgpr40c996dvq5rx1py2bxw0zdd1ibq";
        libraryHaskellDepends = [
          aeson array base base16-bytestring bytestring cereal conduit
          containers cryptonite entropy hashable memory mtl murmur3 network
@@ -100638,6 +100974,8 @@ self: {
        pname = "hasktorch-codegen";
        version = "0.0.1.1";
        sha256 = "0yygx1w7i9mnyxrqzz94vrni5y7rkn92yycax7rqg2r5cds2xb6g";
+       revision = "1";
+       editedCabalFile = "07y9iwmxyvixbvy3mmyxrk95kh8nycazqzv5449pfx2rvry6m6ph";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -100663,6 +101001,8 @@ self: {
        pname = "hasktorch-ffi-tests";
        version = "0.0.1.0";
        sha256 = "0850v3wqf0x5hkk5py7k1glh591p59fs1y1kn2jf2giqmy05qzlc";
+       revision = "1";
+       editedCabalFile = "0jpymss55rj2kmfnp3gv5idlvsg0ckh7pfsm5rmfq9hvisivbv9q";
        libraryHaskellDepends = [
          base hasktorch-types-th hspec QuickCheck text
        ];
@@ -100806,6 +101146,8 @@ self: {
        pname = "hasktorch-signatures-types";
        version = "0.0.1.0";
        sha256 = "0zaa0ihgbsiwqla46dixmxki75miy5dz91agvvd147rmr2khx1j2";
+       revision = "1";
+       editedCabalFile = "0da2sv2cahv05cymh4285s35y4b6snrab62zaibnnqbd0nk55qka";
        libraryHaskellDepends = [ base deepseq ];
        doHaddock = false;
        description = "Core types for Hasktorch backpack signatures";
@@ -100818,6 +101160,8 @@ self: {
        pname = "hasktorch-types-th";
        version = "0.0.1.0";
        sha256 = "0irlf1lvadnr3j3zjakvkvrwdw8gpg5smk69w9l54idwsi6yvhdd";
+       revision = "1";
+       editedCabalFile = "0zgz7l8nawpjrc4p43xxfh9brl0mpszdxgahsn9977q5z08h4wnd";
        libraryHaskellDepends = [ base inline-c ];
        libraryToolDepends = [ c2hs ];
        description = "C-types for Torch";
@@ -100927,6 +101271,8 @@ self: {
        pname = "haskus-utils-data";
        version = "1.1";
        sha256 = "1001apph6i956rkb6dpfhg8cgk870s44jgaaiv8ccxivkv45y7di";
+       revision = "2";
+       editedCabalFile = "0ahwmqlbpvgsd6c5rzq97q00ygsw69k4hvs46f5v20100cdj3496";
        libraryHaskellDepends = [
          base containers extra haskus-utils-types mtl recursion-schemes
          transformers
@@ -100941,6 +101287,8 @@ self: {
        pname = "haskus-utils-types";
        version = "1.2";
        sha256 = "0q7i2z1l55x9pgf9bd5xng0bdx4v74356gayhdxws1gfmghgf7f0";
+       revision = "1";
+       editedCabalFile = "07r524gxdr3alwyns96rv2rmha96s89l2216hzrbvw6c6pqg401a";
        libraryHaskellDepends = [ base ];
        description = "Haskus utility modules";
        license = stdenv.lib.licenses.bsd3;
@@ -100952,8 +101300,8 @@ self: {
      }:
      mkDerivation {
        pname = "haskus-utils-variant";
-       version = "2.1.1";
-       sha256 = "1n8hhb4lv4d9xa0s9fzj6hhj2r22jqf9jrihck5y5nr5rvribfyk";
+       version = "2.2";
+       sha256 = "1h3rpk04dkqppfbw7pilc4sw0pkdxxr70zggsfn63ay4zqk6s5r7";
        libraryHaskellDepends = [
          base haskus-utils-data haskus-utils-types template-haskell
        ];
@@ -105013,33 +105361,31 @@ self: {
   "hgeometry" = callPackage
     ({ mkDerivation, aeson, approximate-equality, array, base
      , bifunctors, bytestring, colour, containers, contravariant
-     , criterion, data-clist, deepseq, deepseq-generics, dlist, doctest
-     , fingertree, fixed-vector, hexpat, hspec, hspec-discover, lens
-     , linear, mtl, optparse-applicative, parsec, QuickCheck
-     , quickcheck-instances, random, reflection, semigroupoids
-     , semigroups, singletons, template-haskell, text, vector, vinyl
-     , yaml
+     , criterion, data-clist, deepseq, deepseq-generics, directory
+     , dlist, doctest, filepath, fingertree, fixed-vector, hexpat, hspec
+     , hspec-discover, lens, linear, mtl, optparse-applicative, parsec
+     , profunctors, QuickCheck, quickcheck-instances, random, reflection
+     , semigroupoids, semigroups, singletons, template-haskell, text
+     , vector, vinyl, yaml
      }:
      mkDerivation {
        pname = "hgeometry";
-       version = "0.7.0.0";
-       sha256 = "0c91n42l6pqkdw46snhplvzm8f05x0x5g3b7mgx13ndskcf9vmyz";
-       revision = "1";
-       editedCabalFile = "1wjwpfiic3jbhg77qm2nzgvybnpk0h3wwpywkpfxz8sv1yhb8pa2";
+       version = "0.8.0.0";
+       sha256 = "0hypd5936kssw435lcvqj9d7whdzfdfbhvi5hhbi90k5x89xfx6f";
        isLibrary = true;
        isExecutable = true;
        enableSeparateDataOutput = true;
        libraryHaskellDepends = [
          aeson base bifunctors bytestring colour containers contravariant
          data-clist deepseq dlist fingertree fixed-vector hexpat lens linear
-         mtl parsec QuickCheck quickcheck-instances random reflection
-         semigroupoids semigroups singletons template-haskell text vector
-         vinyl yaml
+         mtl parsec profunctors QuickCheck quickcheck-instances random
+         reflection semigroupoids semigroups singletons template-haskell
+         text vector vinyl yaml
        ];
        testHaskellDepends = [
          approximate-equality array base bytestring colour containers
-         data-clist doctest hspec lens linear QuickCheck
-         quickcheck-instances random semigroups singletons vector vinyl
+         data-clist directory doctest filepath hspec lens linear QuickCheck
+         quickcheck-instances random semigroups singletons vector vinyl yaml
        ];
        testToolDepends = [ hspec-discover ];
        benchmarkHaskellDepends = [
@@ -106148,20 +106494,20 @@ self: {
 
   "hinterface" = callPackage
     ({ mkDerivation, array, async, base, binary, bytestring, containers
-     , cryptonite, exceptions, hspec, lifted-async, lifted-base, memory
-     , monad-control, monad-logger, mtl, network, QuickCheck, random
-     , resourcet, safe-exceptions, stm, text, transformers
+     , cryptonite, deepseq, exceptions, hspec, lifted-async, lifted-base
+     , memory, monad-control, monad-logger, mtl, network, QuickCheck
+     , random, resourcet, safe-exceptions, stm, text, transformers
      , transformers-base, vector
      }:
      mkDerivation {
        pname = "hinterface";
-       version = "0.5.0.2";
-       sha256 = "1ib8wnpkd8ng6w0wb8hhn1122rqdq4q961b10rvw4jl6bfzkwasb";
+       version = "0.7.0";
+       sha256 = "1n4w8mwx09i8f1h96p7nqls7r22xscy4z9fviwgivp0y59qfbdsx";
        libraryHaskellDepends = [
-         array async base binary bytestring containers cryptonite exceptions
-         lifted-async lifted-base memory monad-control monad-logger mtl
-         network QuickCheck random resourcet safe-exceptions stm text
-         transformers transformers-base vector
+         array async base binary bytestring containers cryptonite deepseq
+         exceptions lifted-async lifted-base memory monad-control
+         monad-logger mtl network QuickCheck random resourcet
+         safe-exceptions stm text transformers transformers-base vector
        ];
        testHaskellDepends = [
          async base binary bytestring hspec monad-logger QuickCheck
@@ -106844,6 +107190,8 @@ self: {
        pname = "hledger";
        version = "1.11.1";
        sha256 = "0cy60ysmydg0ahx6gjmjm97skvjp5a3vgqxsn2l1dp7hk34ac5p9";
+       revision = "1";
+       editedCabalFile = "1g8jfjsfddpiifgv39gi985lsz8fsysf6qni34b0kb44wpd67pfn";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -107286,8 +107634,8 @@ self: {
      }:
      mkDerivation {
        pname = "hlrdb-core";
-       version = "0.1.2.0";
-       sha256 = "1j3ds4kkr1ns7y46b3s29bhi63n31ggvcq4mlyp2xafw2z4nbyl3";
+       version = "0.1.2.2";
+       sha256 = "0qh4p354xzmcd6d6imv9qyflxj9g80rmbdyhf9bscjrqam0dy24b";
        libraryHaskellDepends = [
          base bytestring hashable hedis lens mtl profunctors random time
          unordered-containers
@@ -112218,8 +112566,8 @@ self: {
      }:
      mkDerivation {
        pname = "hsdev";
-       version = "0.3.2.1";
-       sha256 = "01sfpd2dsqbbkxq5arb0gzllfyfcmjwcln91v02f5x1f6ksjlpzp";
+       version = "0.3.2.2";
+       sha256 = "0b4xjkj1qc6mbsp0sn7gqmhys3h39rbfam8qwvhjmgd7d1cbl69p";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -112625,18 +112973,19 @@ self: {
        license = stdenv.lib.licenses.isc;
      }) {};
 
-  "hsinstall_2_1" = callPackage
+  "hsinstall_2_2" = callPackage
     ({ mkDerivation, base, Cabal, directory, filepath, heredoc, process
+     , safe-exceptions
      }:
      mkDerivation {
        pname = "hsinstall";
-       version = "2.1";
-       sha256 = "1azbzkslszq9pw4h91mp1zr6g6ad2haaf3g5146naf1f456z9zjg";
+       version = "2.2";
+       sha256 = "14c98wysvsq4k581s3f5zw44grm6f0wvbmgdda8sshhg7v2059r3";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [ base directory filepath ];
        executableHaskellDepends = [
-         base Cabal directory filepath heredoc process
+         base Cabal directory filepath heredoc process safe-exceptions
        ];
        description = "Install Haskell software";
        license = stdenv.lib.licenses.isc;
@@ -117866,6 +118215,30 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "hw-prim_0_6_2_19" = callPackage
+    ({ mkDerivation, base, bytestring, criterion, directory, exceptions
+     , hedgehog, hspec, hw-hspec-hedgehog, mmap, QuickCheck, semigroups
+     , transformers, vector
+     }:
+     mkDerivation {
+       pname = "hw-prim";
+       version = "0.6.2.19";
+       sha256 = "06d124i6y1kai14yfpwbys3fvpqxf7wrvyhhlihqdvpqfksll1dv";
+       libraryHaskellDepends = [
+         base bytestring mmap semigroups transformers vector
+       ];
+       testHaskellDepends = [
+         base bytestring directory exceptions hedgehog hspec
+         hw-hspec-hedgehog mmap QuickCheck semigroups transformers vector
+       ];
+       benchmarkHaskellDepends = [
+         base bytestring criterion mmap semigroups transformers vector
+       ];
+       description = "Primitive functions and data types";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "hw-prim-bits" = callPackage
     ({ mkDerivation, base, criterion, hedgehog, hspec, hw-hedgehog
      , hw-hspec-hedgehog, QuickCheck, vector
@@ -118014,8 +118387,8 @@ self: {
      }:
      mkDerivation {
        pname = "hw-streams";
-       version = "0.0.0.6";
-       sha256 = "1pfzg1xq39x1mw91nkmswc3sprjh58cygblsqi69x7msgfjdl116";
+       version = "0.0.0.8";
+       sha256 = "08pj20r1is6kyinj60xrl0wz7kcjlcc5xivzrhwmjws5qbscimgw";
        libraryHaskellDepends = [
          base bytestring ghc-prim hw-bits hw-prim mmap primitive semigroups
          transformers vector
@@ -126138,6 +126511,26 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "json-feed_1_0_4" = callPackage
+    ({ mkDerivation, aeson, base, bytestring, filepath, hspec
+     , mime-types, network-uri, tagsoup, text, time
+     }:
+     mkDerivation {
+       pname = "json-feed";
+       version = "1.0.4";
+       sha256 = "07xj9h2zdiyvrib93d99xi179nbzir96yylwkxajpfckfgyi4xmp";
+       libraryHaskellDepends = [
+         aeson base bytestring mime-types network-uri tagsoup text time
+       ];
+       testHaskellDepends = [
+         aeson base bytestring filepath hspec mime-types network-uri tagsoup
+         text time
+       ];
+       description = "JSON Feed";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "json-fu" = callPackage
     ({ mkDerivation, aeson, attoparsec, base, bytestring, containers
      , hashable, hspec, mtl, syb, text, time, unordered-containers
@@ -129253,6 +129646,19 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "lackey_1_0_6" = callPackage
+    ({ mkDerivation, base, hspec, servant, servant-foreign, text }:
+     mkDerivation {
+       pname = "lackey";
+       version = "1.0.6";
+       sha256 = "1z8ipsf78l57jbkcyhjfwbgvj5gmna46x1jvcrin01rpg8xy97q4";
+       libraryHaskellDepends = [ base servant servant-foreign text ];
+       testHaskellDepends = [ base hspec servant servant-foreign text ];
+       description = "Generate Ruby clients from Servant APIs";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "lacroix" = callPackage
     ({ mkDerivation, base }:
      mkDerivation {
@@ -131740,6 +132146,8 @@ self: {
        pname = "lazy-hash";
        version = "0.1.0.0";
        sha256 = "1xa2c8gxk5l4njbs58zpq2ybdvjd4y214p71nfmfrzw0arwz49pa";
+       revision = "1";
+       editedCabalFile = "07sn3q7q29zkxpillprx2d05pybjpvpglz8s7jq07akdhwmwx9mk";
        libraryHaskellDepends = [
          base constrained-categories hashable haskell-src-meta tagged
          template-haskell vector-space
@@ -140761,8 +141169,8 @@ self: {
      }:
      mkDerivation {
        pname = "matterhorn";
-       version = "40901.0.0";
-       sha256 = "1ra1ikivf5y17mzwjvfsvg1kz4438wllv2qwxzaigb9cirrz0n4r";
+       version = "50200.0.0";
+       sha256 = "07zbkkbn5cn8rcbc0xznlldcflhfp4szx6phlh7xpgf2hrcyc3g6";
        isLibrary = false;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -140798,8 +141206,8 @@ self: {
      }:
      mkDerivation {
        pname = "mattermost-api";
-       version = "40900.1.0";
-       sha256 = "1ngpinpal50s8bizwvnpafx6zh8zqb7m0yc21lcp7ybh4yhwikad";
+       version = "50200.0.0";
+       sha256 = "09jpgkz2hcybrrpkdn2x5lf2wnjzlinzxxsfrqvh7hgkga4gb7q8";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -140823,8 +141231,8 @@ self: {
      }:
      mkDerivation {
        pname = "mattermost-api-qc";
-       version = "40900.1.0";
-       sha256 = "0mdwi6130hz508bxbhriyg7fr6rqpbalmjwwizvj9nb7cz1dmrsl";
+       version = "50200.0.0";
+       sha256 = "12m7r98qpd2i5d5dv60ibd0v1pxwfnx58v77k8y55dyd1d0m96v0";
        libraryHaskellDepends = [
          base containers mattermost-api QuickCheck text time
        ];
@@ -141594,7 +142002,7 @@ self: {
        license = stdenv.lib.licenses.bsd2;
      }) {};
 
-  "megaparsec_7_0_3" = callPackage
+  "megaparsec_7_0_4" = callPackage
     ({ mkDerivation, base, bytestring, case-insensitive, containers
      , criterion, deepseq, hspec, hspec-expectations, mtl
      , parser-combinators, QuickCheck, scientific, text, transformers
@@ -141602,8 +142010,8 @@ self: {
      }:
      mkDerivation {
        pname = "megaparsec";
-       version = "7.0.3";
-       sha256 = "1zngs6x7d1yp192pg8b0j5banq4y1vr1fwh1mxrxx0834bmqrll0";
+       version = "7.0.4";
+       sha256 = "1hg83m85f4v78mqdkznd1ddk9y32hnrv0bgva7ir3vydx37aanrj";
        libraryHaskellDepends = [
          base bytestring case-insensitive containers deepseq mtl
          parser-combinators scientific text transformers
@@ -142014,8 +142422,8 @@ self: {
      }:
      mkDerivation {
        pname = "menoh";
-       version = "0.2.0";
-       sha256 = "0n6wl03d8gyvmdjmxz0hrbvwvbyzc4qyz7qr5ydgxyxj56pg2cb4";
+       version = "0.3.0";
+       sha256 = "0w2p2g5zk4n3k84yrk7hs7kgk82w6avd2i0zk6iczjhhkihh1c6m";
        isLibrary = true;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -142027,7 +142435,8 @@ self: {
          base filepath JuicyPixels optparse-applicative vector
        ];
        testHaskellDepends = [
-         async base filepath JuicyPixels tasty tasty-hunit tasty-th vector
+         async base bytestring filepath JuicyPixels tasty tasty-hunit
+         tasty-th vector
        ];
        description = "Haskell binding for Menoh DNN inference library";
        license = stdenv.lib.licenses.mit;
@@ -144275,6 +144684,8 @@ self: {
        pname = "modern-uri";
        version = "0.3.0.1";
        sha256 = "01a5jnv8kbl2c9ka9dgqm4a8b7n6frmg7yi8f417qcnwgn1lbs78";
+       revision = "1";
+       editedCabalFile = "13q0lapxk1v3ci3bqv21942jf2fw87frbbam53apd3i2iv69bqyr";
        libraryHaskellDepends = [
          base bytestring containers contravariant deepseq exceptions
          megaparsec mtl profunctors QuickCheck reflection tagged
@@ -152132,14 +152543,13 @@ self: {
      }:
      mkDerivation {
        pname = "newsynth";
-       version = "0.3.0.3";
-       sha256 = "1vbh9d17mibzjkakqwda2dcmqkamaq48zv0dcd104xmgkgmqzvw2";
+       version = "0.3.0.4";
+       sha256 = "0w31h7xqv9sk0jb1mdviv107w8y7v018bzdvdw8gcrjyvp47307q";
        isLibrary = true;
        isExecutable = true;
-       libraryHaskellDepends = [
-         base containers fixedprec random superdoc
-       ];
-       executableHaskellDepends = [ base random superdoc time ];
+       setupHaskellDepends = [ base superdoc ];
+       libraryHaskellDepends = [ base containers fixedprec random ];
+       executableHaskellDepends = [ base random time ];
        description = "Exact and approximate synthesis of quantum circuits";
        license = stdenv.lib.licenses.gpl3;
        hydraPlatforms = stdenv.lib.platforms.none;
@@ -152570,18 +152980,18 @@ self: {
      }) {};
 
   "nix-delegate" = callPackage
-    ({ mkDerivation, base, foldl, managed, neat-interpolation
-     , optparse-applicative, text, turtle
+    ({ mkDerivation, base, bytestring, foldl, managed
+     , neat-interpolation, optparse-applicative, text, turtle
      }:
      mkDerivation {
        pname = "nix-delegate";
-       version = "1.0.0";
-       sha256 = "1fzk6a2izs8sf2gq93m91m6l7h8i3374as8979h106588ww2ghhb";
+       version = "1.0.1";
+       sha256 = "00wyzj4xck0kjn3151q9crsycgh26nvg56567c0ifdr0s5h5f00w";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
-         base foldl managed neat-interpolation optparse-applicative text
-         turtle
+         base bytestring foldl managed neat-interpolation
+         optparse-applicative text turtle
        ];
        executableHaskellDepends = [ base ];
        description = "Convenient utility for distributed Nix builds";
@@ -154422,6 +154832,31 @@ self: {
        license = stdenv.lib.licenses.gpl3;
      }) {};
 
+  "oauth2-jwt-bearer" = callPackage
+    ({ mkDerivation, aeson, async, base, bytestring, cryptonite
+     , hedgehog, http-client, http-client-tls, http-types, jose, lens
+     , mmorph, network, Spock-core, streaming-commons, text, time
+     , transformers, transformers-bifunctors, unordered-containers, warp
+     , x509, x509-store
+     }:
+     mkDerivation {
+       pname = "oauth2-jwt-bearer";
+       version = "0.0.1";
+       sha256 = "0fcq0ggzhjpr8v2s0k6izjs1pp0lcbf7kb12vmclyy5bzby8vkcn";
+       libraryHaskellDepends = [
+         aeson base bytestring http-client http-client-tls http-types jose
+         lens text time transformers transformers-bifunctors
+         unordered-containers
+       ];
+       testHaskellDepends = [
+         aeson async base bytestring cryptonite hedgehog http-client
+         http-client-tls http-types jose mmorph network Spock-core
+         streaming-commons text warp x509 x509-store
+       ];
+       description = "OAuth2 jwt-bearer client flow as per rfc7523";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "oauthenticated" = callPackage
     ({ mkDerivation, aeson, base, base64-bytestring, blaze-builder
      , bytestring, case-insensitive, cryptonite, exceptions, hspec
@@ -161336,16 +161771,14 @@ self: {
      }) {};
 
   "persist" = callPackage
-    ({ mkDerivation, array, base, bytestring, containers, ghc-prim
-     , QuickCheck, test-framework, test-framework-quickcheck2, text
+    ({ mkDerivation, base, bytestring, containers, QuickCheck
+     , test-framework, test-framework-quickcheck2, text
      }:
      mkDerivation {
        pname = "persist";
-       version = "0.1";
-       sha256 = "0akiy8qrx71nj8l80hc7llxy7vnpcvjg01dhk499pl5mjaiqz2sq";
-       libraryHaskellDepends = [
-         array base bytestring containers ghc-prim text
-       ];
+       version = "0.1.1.0";
+       sha256 = "1rk0pgy3dk9aq17p1kn2pzhppvpjzcs9righ3n7xchmsmiqqs2ji";
+       libraryHaskellDepends = [ base bytestring containers text ];
        testHaskellDepends = [
          base bytestring QuickCheck test-framework
          test-framework-quickcheck2 text
@@ -164451,8 +164884,8 @@ self: {
      }:
      mkDerivation {
        pname = "pixela";
-       version = "0.2.0.0";
-       sha256 = "1hwizaxgn6x61vdspn8l3yljjlsglilvlimlz32ngcl1bpdhxh9l";
+       version = "0.2.1.0";
+       sha256 = "15bzvwd1dh27p1gs6kfilk34gfkbczz43w70xagk60hvf1mdlcxl";
        libraryHaskellDepends = [
          aeson base bytestring data-default http-client http-client-tls
          http-types split text unordered-containers uri-encode vector
@@ -174523,6 +174956,25 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "rank2classes_1_2" = callPackage
+    ({ mkDerivation, base, distributive, doctest, tasty, tasty-hunit
+     , template-haskell, transformers
+     }:
+     mkDerivation {
+       pname = "rank2classes";
+       version = "1.2";
+       sha256 = "1qaqsg4xfvhdvffr42y1r95lkvm2spj27pwxz4vrhkxq56fkbj2p";
+       libraryHaskellDepends = [
+         base distributive template-haskell transformers
+       ];
+       testHaskellDepends = [
+         base distributive doctest tasty tasty-hunit
+       ];
+       description = "standard type constructor class hierarchy, only with methods of rank 2 types";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "rapid" = callPackage
     ({ mkDerivation, async, base, containers, foreign-store, stm }:
      mkDerivation {
@@ -174839,6 +175291,28 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "ratel_1_0_6" = callPackage
+    ({ mkDerivation, aeson, base, bytestring, case-insensitive
+     , containers, filepath, hspec, http-client, http-client-tls
+     , http-types, text, uuid
+     }:
+     mkDerivation {
+       pname = "ratel";
+       version = "1.0.6";
+       sha256 = "0bqgkijadr3zhmnq787k6bkqg96di3fbrb3ywlypns624mhwcw37";
+       libraryHaskellDepends = [
+         aeson base bytestring case-insensitive containers http-client
+         http-client-tls http-types text uuid
+       ];
+       testHaskellDepends = [
+         aeson base bytestring case-insensitive containers filepath hspec
+         http-client http-client-tls http-types text uuid
+       ];
+       description = "Notify Honeybadger about exceptions";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "ratel-wai" = callPackage
     ({ mkDerivation, base, bytestring, case-insensitive, containers
      , http-client, ratel, wai
@@ -174854,6 +175328,22 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "ratel-wai_1_0_4" = callPackage
+    ({ mkDerivation, base, bytestring, case-insensitive, containers
+     , http-client, ratel, wai
+     }:
+     mkDerivation {
+       pname = "ratel-wai";
+       version = "1.0.4";
+       sha256 = "1cri461f40xa43kwg3wq5k98irfqypsi97xdk9n60yqhc8msca4m";
+       libraryHaskellDepends = [
+         base bytestring case-insensitive containers http-client ratel wai
+       ];
+       description = "Notify Honeybadger about exceptions via a WAI middleware";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "rating-systems" = callPackage
     ({ mkDerivation, base }:
      mkDerivation {
@@ -174906,15 +175396,16 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
-  "rattletrap_6_0_1" = callPackage
+  "rattletrap_6_0_2" = callPackage
     ({ mkDerivation, aeson, aeson-pretty, base, binary, binary-bits
-     , bytestring, containers, filepath, http-client, http-client-tls
-     , HUnit, template-haskell, temporary, text, transformers
+     , bytestring, clock, containers, filepath, http-client
+     , http-client-tls, HUnit, template-haskell, temporary, text
+     , transformers
      }:
      mkDerivation {
        pname = "rattletrap";
-       version = "6.0.1";
-       sha256 = "1chpivz9iprnj5p3kbqsgpviqg5d3dx41596ki1dydm1wmpn3bcj";
+       version = "6.0.2";
+       sha256 = "1904g1s61zazhg6zn189m7y9v5aap39zd0gfypzd9jrk6489aqi1";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -174928,9 +175419,9 @@ self: {
          transformers
        ];
        testHaskellDepends = [
-         aeson aeson-pretty base binary binary-bits bytestring containers
-         filepath http-client http-client-tls HUnit template-haskell
-         temporary text transformers
+         aeson aeson-pretty base binary binary-bits bytestring clock
+         containers filepath http-client http-client-tls HUnit
+         template-haskell temporary text transformers
        ];
        description = "Parse and generate Rocket League replays";
        license = stdenv.lib.licenses.mit;
@@ -178191,25 +178682,21 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
-  "relude_0_3_0" = callPackage
+  "relude_0_4_0" = callPackage
     ({ mkDerivation, base, bytestring, containers, deepseq, doctest
      , gauge, ghc-prim, Glob, hashable, hedgehog, mtl, stm, tasty
      , tasty-hedgehog, text, transformers, unordered-containers
-     , utf8-string
      }:
      mkDerivation {
        pname = "relude";
-       version = "0.3.0";
-       sha256 = "10cbgz1xzw67q3y9fw8px7wwxblv5qym51qpdljmjz4ilpy0k35j";
-       revision = "1";
-       editedCabalFile = "04jfgc38pwrqir1j91l8jfzsp0hzggxr7kmbnfqcgrlpqidpj7mh";
+       version = "0.4.0";
+       sha256 = "03z8ji8hssb811d1xvmv2zlnq7h7dsr801x05xydhfl1srbg5i9f";
        libraryHaskellDepends = [
          base bytestring containers deepseq ghc-prim hashable mtl stm text
-         transformers unordered-containers utf8-string
+         transformers unordered-containers
        ];
        testHaskellDepends = [
          base bytestring doctest Glob hedgehog tasty tasty-hedgehog text
-         utf8-string
        ];
        benchmarkHaskellDepends = [
          base containers gauge unordered-containers
@@ -181276,6 +181763,26 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "ron" = callPackage
+    ({ mkDerivation, aeson, attoparsec, base, binary, bytestring
+     , containers, criterion, data-default, deepseq, Diff, errors, extra
+     , hashable, mtl, safe, stringsearch, template-haskell, text, time
+     , unordered-containers, vector
+     }:
+     mkDerivation {
+       pname = "ron";
+       version = "0.1";
+       sha256 = "1dwi0yyqzrwsl3x359hdpa5x77jqmbdidy0lx2wx2xlg0yzf5cfv";
+       libraryHaskellDepends = [
+         aeson attoparsec base binary bytestring containers data-default
+         deepseq Diff errors extra hashable mtl safe stringsearch
+         template-haskell text time unordered-containers vector
+       ];
+       benchmarkHaskellDepends = [ base criterion deepseq ];
+       description = "RON, RON-RDT, and RON-Schema";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "roots" = callPackage
     ({ mkDerivation, base, tagged }:
      mkDerivation {
@@ -186195,8 +186702,8 @@ self: {
      }:
      mkDerivation {
        pname = "sensu-run";
-       version = "0.6.0.2";
-       sha256 = "1lxz3cr04f4bqlm4jph66ckab494vqlaf6jc67dbmmwia6if2fpw";
+       version = "0.6.0.3";
+       sha256 = "0zipxs3l99ppaxwsvidjycm7mfyvqll88vrn6ajdpdcbmv1c5vc4";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
@@ -190080,6 +190587,8 @@ self: {
        pname = "shannon-fano";
        version = "0.1.0.1";
        sha256 = "11xpz5mi1yk9zcy22fhn6j4xnyifxgn07nd6nrx588h1g6w8r2df";
+       revision = "1";
+       editedCabalFile = "1da8hsqrv7nz9nlkdlqvjcssfzf4r6fxdhv8lryz92d7jjjxyjcc";
        libraryHaskellDepends = [ base bytestring split ];
        testHaskellDepends = [ base QuickCheck ];
        description = "Shannon-fano compression algorithm implementation in Haskell";
@@ -190625,8 +191134,8 @@ self: {
      }:
      mkDerivation {
        pname = "shine";
-       version = "0.2.0.2";
-       sha256 = "0r0rl65rkcdg8c8lzli87nfad8bk4xypiqvb2qs68fhhzwx1zfg2";
+       version = "0.2.0.3";
+       sha256 = "16h5igycgas28qk22yg08qkfwsrar9g4bw7q8p94vmf993p4542k";
        libraryHaskellDepends = [
          base ghcjs-dom ghcjs-prim keycode mtl time transformers
        ];
@@ -191533,8 +192042,8 @@ self: {
      }:
      mkDerivation {
        pname = "simple-log";
-       version = "0.9.8";
-       sha256 = "1yn2nnvmzfw4v7bi6jchsd8y27vpd8m4in0shydyyglpjmaq751k";
+       version = "0.9.9";
+       sha256 = "0pmamadkiyryl3mdvnq1gc7yx0bm4qspvj489ac27hrlr9d1d7j7";
        libraryHaskellDepends = [
          async base base-unicode-symbols containers data-default deepseq
          directory exceptions filepath hformat microlens microlens-platform
@@ -193040,21 +193549,21 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
-  "slave-thread_1_0_2_3" = callPackage
-    ({ mkDerivation, base, deferred-folds, foldl, HTF, mmorph
-     , partial-handler, QuickCheck, quickcheck-instances, rerebase
-     , SafeSemaphore, stm-containers, transformers
+  "slave-thread_1_0_2_6" = callPackage
+    ({ mkDerivation, base, deferred-folds, foldl, QuickCheck
+     , quickcheck-instances, rerebase, SafeSemaphore, stm-containers
+     , tasty, tasty-hunit, tasty-quickcheck, transformers
      }:
      mkDerivation {
        pname = "slave-thread";
-       version = "1.0.2.3";
-       sha256 = "131zq1lb38mmavzdb2ysmnifmhvglb438q1p31pp5x4pmhdhnglj";
+       version = "1.0.2.6";
+       sha256 = "014j8rsbkrkabpvq5sxp6i2d3gpzn4ddnfwl1p5cg3xlmr950ksn";
        libraryHaskellDepends = [
-         base deferred-folds foldl mmorph partial-handler stm-containers
-         transformers
+         base deferred-folds foldl stm-containers transformers
        ];
        testHaskellDepends = [
-         HTF QuickCheck quickcheck-instances rerebase SafeSemaphore
+         QuickCheck quickcheck-instances rerebase SafeSemaphore tasty
+         tasty-hunit tasty-quickcheck
        ];
        description = "A fundamental solution to ghost threads and silent exceptions";
        license = stdenv.lib.licenses.mit;
@@ -201236,6 +201745,17 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "strict-tuple" = callPackage
+    ({ mkDerivation, base }:
+     mkDerivation {
+       pname = "strict-tuple";
+       version = "0.1.1";
+       sha256 = "13r72i95d0aal7i6v1mrviin2i5c6j9zs0f3qvc66wyy7mkr1h5n";
+       libraryHaskellDepends = [ base ];
+       description = "Strict tuples";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "strict-types" = callPackage
     ({ mkDerivation, array, base, bytestring, containers, deepseq
      , hashable, text, unordered-containers, vector
@@ -201733,6 +202253,30 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "strive_5_0_7" = callPackage
+    ({ mkDerivation, aeson, base, bytestring, data-default, gpolyline
+     , http-client, http-client-tls, http-types, markdown-unlit
+     , template-haskell, text, time, transformers
+     }:
+     mkDerivation {
+       pname = "strive";
+       version = "5.0.7";
+       sha256 = "0hxy5znrfcls6bd8hjil97mya3w8zkppfd4jrz0ayz7zidbws5kg";
+       libraryHaskellDepends = [
+         aeson base bytestring data-default gpolyline http-client
+         http-client-tls http-types template-haskell text time transformers
+       ];
+       testHaskellDepends = [
+         aeson base bytestring data-default gpolyline http-client
+         http-client-tls http-types markdown-unlit template-haskell text
+         time transformers
+       ];
+       testToolDepends = [ markdown-unlit ];
+       description = "A client for the Strava V3 API";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "strptime" = callPackage
     ({ mkDerivation, base, bytestring, text, time }:
      mkDerivation {
@@ -205270,21 +205814,22 @@ self: {
 
   "tailfile-hinotify" = callPackage
     ({ mkDerivation, async, base, bytestring, conceit, directory
-     , filepath, foldl, hinotify, pipes, process-streaming, streaming
-     , streaming-eversion, tasty, tasty-hunit
+     , filepath, foldl, hinotify, pipes, pipes-transduce
+     , process-streaming, streaming, streaming-eversion, tasty
+     , tasty-hunit, text
      }:
      mkDerivation {
        pname = "tailfile-hinotify";
-       version = "1.0.0.3";
-       sha256 = "0czw1ahm4zcxhyhzg6by3rfbirkhv9jlcw9yzp7q1zrxb3schbyz";
+       version = "2.0.0.0";
+       sha256 = "0qnpikj8fbjnks95wwza8m773j0b9sg7fn16dvpfps189icm85gi";
        libraryHaskellDepends = [
          async base bytestring foldl hinotify pipes streaming
-         streaming-eversion
+         streaming-eversion text
        ];
        testHaskellDepends = [
          async base bytestring conceit directory filepath foldl hinotify
-         pipes process-streaming streaming streaming-eversion tasty
-         tasty-hunit
+         pipes pipes-transduce process-streaming streaming
+         streaming-eversion tasty tasty-hunit text
        ];
        description = "Tail files in Unix, using hinotify";
        license = stdenv.lib.licenses.mit;
@@ -220357,12 +220902,12 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
-  "validity_0_8_0_0" = callPackage
+  "validity_0_9_0_0" = callPackage
     ({ mkDerivation, base, hspec }:
      mkDerivation {
        pname = "validity";
-       version = "0.8.0.0";
-       sha256 = "0yr342gd8ylji7nqa8w3ssik8qcgb4v3h3j30qf5nbzg900k5rsn";
+       version = "0.9.0.0";
+       sha256 = "1rm0gw049v7f9i5rqn8f8ps4ksawmmggmhw9yclgh4qhhql7gz3q";
        libraryHaskellDepends = [ base ];
        testHaskellDepends = [ base hspec ];
        description = "Validity typeclass";
@@ -221342,6 +221887,23 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "vector-sized_1_1_0_0" = callPackage
+    ({ mkDerivation, adjunctions, base, comonad, deepseq, distributive
+     , finite-typelits, indexed-list-literals, primitive, vector
+     }:
+     mkDerivation {
+       pname = "vector-sized";
+       version = "1.1.0.0";
+       sha256 = "0y11ggayk4l61i50m0gxv6qm7z1pscmagj5nyrz3q47j31pv5vkl";
+       libraryHaskellDepends = [
+         adjunctions base comonad deepseq distributive finite-typelits
+         indexed-list-literals primitive vector
+       ];
+       description = "Size tagged vectors";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "vector-space" = callPackage
     ({ mkDerivation, base, Boolean, MemoTrie, NumInstances }:
      mkDerivation {
@@ -221625,8 +222187,8 @@ self: {
     ({ mkDerivation, aeson, base, bytestring, hspec, semigroupoids }:
      mkDerivation {
        pname = "versioning";
-       version = "0.3.0.0";
-       sha256 = "12d5xxc8i0ldbsb6y22f9gvk0d61nrgjz3yf7ppvqrzhilgs6yyf";
+       version = "0.3.0.1";
+       sha256 = "08072xwz094qdawczggxx8gk734cas8767zcah84q30qdb5ywzwf";
        libraryHaskellDepends = [ aeson base bytestring semigroupoids ];
        testHaskellDepends = [ aeson base bytestring hspec ];
        description = "Type-safe data versioning";
@@ -221640,8 +222202,8 @@ self: {
      }:
      mkDerivation {
        pname = "versioning-servant";
-       version = "0.1.0.0";
-       sha256 = "14a1fk2mgcjjlb1z01xb5ngf496kpfr2y588265zn72q54a7l08k";
+       version = "0.1.0.1";
+       sha256 = "0hk30p8wjn00dzxyd45hf7r1qhn944j12km00birgqhf4vcmw7c4";
        libraryHaskellDepends = [
          aeson attoparsec base bytestring http-media servant versioning
        ];
@@ -222643,8 +223205,8 @@ self: {
      }:
      mkDerivation {
        pname = "waargonaut";
-       version = "0.1.0.0";
-       sha256 = "0y3h1kgh7n639h714ji4fycj6b8vcsa79jfv36w995p9gbjxxdjc";
+       version = "0.2.0.0";
+       sha256 = "1qk4wg2jqzylaqq0yjq9byj3k5vj23jqvdshvyj7r9fl0f3hynni";
        setupHaskellDepends = [ base Cabal cabal-doctest ];
        libraryHaskellDepends = [
          base bifunctors bytestring containers contravariant digit
@@ -224709,8 +225271,8 @@ self: {
        pname = "wave";
        version = "0.1.5";
        sha256 = "03zycmwrchhqvi37fdvlzz2d1vl4hy0i8xyys1zznw38qfq0h2i5";
-       revision = "1";
-       editedCabalFile = "1wvgxay0r5rpcc7yxkznxxcp1za0ifxvk87w0xrilxgb35r3izz8";
+       revision = "2";
+       editedCabalFile = "0zs0mw42z9xzs1r935pd5dssf0x10qbkhxlpfknv0x75n2k0azzj";
        enableSeparateDataOutput = true;
        libraryHaskellDepends = [
          base bytestring cereal containers data-default-class transformers
@@ -225884,6 +226446,8 @@ self: {
        pname = "wedged";
        version = "2";
        sha256 = "1aw29dk0h25zw60m288423bakz36k0jpmzdhy7kq2wns3l5k6jqs";
+       revision = "1";
+       editedCabalFile = "0b3wq7pcz0m5qz7d9np5lhi3yh76ksx1v14bvsd6krr49p742zg5";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
@@ -227927,6 +228491,21 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "wuss_1_1_11" = callPackage
+    ({ mkDerivation, base, bytestring, connection, network, websockets
+     }:
+     mkDerivation {
+       pname = "wuss";
+       version = "1.1.11";
+       sha256 = "1mlqgi80r5db0j58r0laiwp1044n4insq89bv1v3y26j726yjvp0";
+       libraryHaskellDepends = [
+         base bytestring connection network websockets
+       ];
+       description = "Secure WebSocket (WSS) clients";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "wx" = callPackage
     ({ mkDerivation, base, stm, time, wxcore }:
      mkDerivation {

From 1fd998c512b824921fbe52a1916639b6bac0e4c2 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Tue, 6 Nov 2018 13:49:12 +0100
Subject: [PATCH 0708/1129] haskell-src-meta: drop obsolete override

---
 pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix | 3 ---
 1 file changed, 3 deletions(-)

diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
index 8d8b95a51a23..315740b309fa 100644
--- a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
+++ b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
@@ -97,9 +97,6 @@ self: super: {
   unicode-transforms = dontCheck super.unicode-transforms;
   monad-par = dontCheck super.monad-par;  # https://github.com/simonmar/monad-par/issues/66
 
-  # https://github.com/bmillwood/haskell-src-meta/pull/80
-  haskell-src-meta = doJailbreak super.haskell-src-meta;
-
   # https://github.com/jgm/skylighting/issues/55
   skylighting-core = dontCheck super.skylighting-core;
 

From 8113f61c2affd2c4142d726c15410456eb770a14 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Tue, 6 Nov 2018 13:39:20 +0100
Subject: [PATCH 0709/1129] haskell-neat-interpolation: the test suite is
 supposed to work again

---
 pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix | 1 -
 1 file changed, 1 deletion(-)

diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
index 4276de9f90d7..6635e4aefd8b 100644
--- a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
+++ b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
@@ -67,7 +67,6 @@ self: super: {
   JuicyPixels = self.JuicyPixels_3_3_2;
   lens = self.lens_4_17;
   megaparsec = dontCheck (doJailbreak super.megaparsec);
-  neat-interpolation = dontCheck super.neat-interpolation;  # test suite depends on broken HTF
   patience = markBrokenVersion "0.1.1" super.patience;
   polyparse = self.polyparse_1_12_1;
   primitive = self.primitive_0_6_4_0;

From 357554ae899c3e8fed75be05ca57085d5689e04d Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Tue, 6 Nov 2018 13:52:04 +0100
Subject: [PATCH 0710/1129] ghc: drop unused 7.10.3-binary compiler

---
 .../compilers/ghc/7.10.3-binary.nix           | 163 ------------------
 pkgs/top-level/haskell-packages.nix           |   8 -
 2 files changed, 171 deletions(-)
 delete mode 100644 pkgs/development/compilers/ghc/7.10.3-binary.nix

diff --git a/pkgs/development/compilers/ghc/7.10.3-binary.nix b/pkgs/development/compilers/ghc/7.10.3-binary.nix
deleted file mode 100644
index 53693ff50521..000000000000
--- a/pkgs/development/compilers/ghc/7.10.3-binary.nix
+++ /dev/null
@@ -1,163 +0,0 @@
-{ stdenv
-, fetchurl, perl
-, ncurses5, gmp, libiconv
-, gcc, llvm_35
-}:
-
-# Prebuilt only does native
-assert stdenv.targetPlatform == stdenv.hostPlatform;
-
-let
-  libPath = stdenv.lib.makeLibraryPath ([
-    ncurses5 gmp
-  ] ++ stdenv.lib.optional (stdenv.hostPlatform.isDarwin) libiconv);
-
-  libEnvVar = stdenv.lib.optionalString stdenv.hostPlatform.isDarwin "DY"
-    + "LD_LIBRARY_PATH";
-
-in
-
-stdenv.mkDerivation rec {
-  version = "7.10.3";
-
-  name = "ghc-${version}-binary";
-
-  src = fetchurl ({
-    "i686-linux" = {
-      url = "http://haskell.org/ghc/dist/${version}/ghc-${version}b-i386-deb7-linux.tar.bz2";
-      sha256 = "20b32912fb7e57910a3c908f99a9519b57a4872e1ea0f4f2265b2f7b30e8a3cd";
-    };
-    "x86_64-linux" = {
-      url = "http://haskell.org/ghc/dist/${version}/ghc-${version}b-x86_64-deb8-linux.tar.bz2";
-      sha256 = "5e163c557e9236cce68be41c984eab0fcdbdc1602e39040ca9ae325e6bdec1c3";
-    };
-    "armv7l-linux" = {
-      url = "http://haskell.org/ghc/dist/${version}/ghc-${version}-armv7-deb8-linux.tar.bz2";
-      sha256 = "2913763eef88e4d1843a1e4c34225afb1866310d1a1956c08a4131f4593518f6";
-    };
-    "x86_64-darwin" = {
-      url = "http://haskell.org/ghc/dist/${version}/ghc-${version}b-x86_64-apple-darwin.tar.bz2";
-      sha256 = "4b537228d49b5ea0f8e8dbcc440a5b3c3cb19a92579d607291cc0041422fa5c3";
-    };
-  }.${stdenv.hostPlatform.system}
-    or (throw "cannot bootstrap GHC on this platform"));
-
-  nativeBuildInputs = [ perl ];
-  buildInputs = stdenv.lib.optionals stdenv.targetPlatform.isAarch32 [ llvm_35 ];
-
-  # Cannot patchelf beforehand due to relative RPATHs that anticipate
-  # the final install location/
-  ${libEnvVar} = libPath;
-
-  postUnpack =
-    # GHC has dtrace probes, which causes ld to try to open /usr/lib/libdtrace.dylib
-    # during linking
-    stdenv.lib.optionalString stdenv.isDarwin ''
-      export NIX_LDFLAGS+=" -no_dtrace_dof"
-      # not enough room in the object files for the full path to libiconv :(
-      for exe in $(find . -type f -executable); do
-        isScript $exe && continue
-        ln -fs ${libiconv}/lib/libiconv.dylib $(dirname $exe)/libiconv.dylib
-        install_name_tool -change /usr/lib/libiconv.2.dylib @executable_path/libiconv.dylib -change /usr/local/lib/gcc/5/libgcc_s.1.dylib ${gcc.cc.lib}/lib/libgcc_s.1.dylib $exe
-      done
-    '' +
-
-    # Some scripts used during the build need to have their shebangs patched
-    ''
-      patchShebangs ghc-${version}/utils/
-      patchShebangs ghc-${version}/configure
-    '' +
-
-    # Strip is harmful, see also below. It's important that this happens
-    # first. The GHC Cabal build system makes use of strip by default and
-    # has hardcoded paths to /usr/bin/strip in many places. We replace
-    # those below, making them point to our dummy script.
-    ''
-      mkdir "$TMP/bin"
-      for i in strip; do
-        echo '#! ${stdenv.shell}' > "$TMP/bin/$i"
-        chmod +x "$TMP/bin/$i"
-      done
-      PATH="$TMP/bin:$PATH"
-    '' +
-    # We have to patch the GMP paths for the integer-gmp package.
-    ''
-      find . -name integer-gmp.buildinfo \
-          -exec sed -i "s@extra-lib-dirs: @extra-lib-dirs: ${gmp.out}/lib@" {} \;
-    '' + stdenv.lib.optionalString stdenv.isDarwin ''
-      find . -name base.buildinfo \
-          -exec sed -i "s@extra-lib-dirs: @extra-lib-dirs: ${libiconv}/lib@" {} \;
-    '' +
-    # Rename needed libraries and binaries, fix interpreter
-    stdenv.lib.optionalString stdenv.isLinux ''
-      find . -type f -perm -0100 -exec patchelf \
-          --replace-needed libncurses${stdenv.lib.optionalString stdenv.is64bit "w"}.so.5 libncurses.so \
-          --replace-needed libtinfo.so libtinfo.so.5 \
-          --interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" {} \;
-
-      paxmark m ./ghc-${version}/ghc/stage2/build/tmp/ghc-stage2
-
-      sed -i "s|/usr/bin/perl|perl\x00        |" ghc-${version}/ghc/stage2/build/tmp/ghc-stage2
-      sed -i "s|/usr/bin/gcc|gcc\x00        |" ghc-${version}/ghc/stage2/build/tmp/ghc-stage2
-    '';
-
-  configurePlatforms = [ ];
-  configureFlags = [
-    "--with-gmp-libraries=${stdenv.lib.getLib gmp}/lib"
-    "--with-gmp-includes=${stdenv.lib.getDev gmp}/include"
-  ] ++ stdenv.lib.optional stdenv.isDarwin "--with-gcc=${./gcc-clang-wrapper.sh}";
-
-  # Stripping combined with patchelf breaks the executables (they die
-  # with a segfault or the kernel even refuses the execve). (NIXPKGS-85)
-  dontStrip = true;
-
-  # No building is necessary, but calling make without flags ironically
-  # calls install-strip ...
-  dontBuild = true;
-
-  # On Linux, use patchelf to modify the executables so that they can
-  # find editline/gmp.
-  preFixup = stdenv.lib.optionalString stdenv.isLinux ''
-    for p in $(find "$out" -type f -executable); do
-      if isELF "$p"; then
-        echo "Patchelfing $p"
-        patchelf --set-rpath "${libPath}:$(patchelf --print-rpath $p)" $p
-      fi
-    done
-  '' + stdenv.lib.optionalString stdenv.isDarwin ''
-    # not enough room in the object files for the full path to libiconv :(
-    for exe in $(find "$out" -type f -executable); do
-      isScript $exe && continue
-      ln -fs ${libiconv}/lib/libiconv.dylib $(dirname $exe)/libiconv.dylib
-      install_name_tool -change /usr/lib/libiconv.2.dylib @executable_path/libiconv.dylib -change /usr/local/lib/gcc/5/libgcc_s.1.dylib ${gcc.cc.lib}/lib/libgcc_s.1.dylib $exe
-    done
-
-    for file in $(find "$out" -name setup-config); do
-      substituteInPlace $file --replace /usr/bin/ranlib "$(type -P ranlib)"
-    done
-  '';
-
-  doInstallCheck = true;
-  installCheckPhase = ''
-    unset ${libEnvVar}
-    # Sanity check, can ghc create executables?
-    cd $TMP
-    mkdir test-ghc; cd test-ghc
-    cat > main.hs << EOF
-      {-# LANGUAGE TemplateHaskell #-}
-      module Main where
-      main = putStrLn \$([|"yes"|])
-    EOF
-    $out/bin/ghc --make main.hs || exit 1
-    echo compilation ok
-    [ $(./main) == "yes" ]
-  '';
-
-  passthru = {
-    targetPrefix = "";
-    enableShared = true;
-  };
-
-  meta.license = stdenv.lib.licenses.bsd3;
-  meta.platforms = ["x86_64-linux" "i686-linux" "x86_64-darwin" "armv7l-linux"];
-}
diff --git a/pkgs/top-level/haskell-packages.nix b/pkgs/top-level/haskell-packages.nix
index 2b77c731e63a..80dd1a04e73d 100644
--- a/pkgs/top-level/haskell-packages.nix
+++ b/pkgs/top-level/haskell-packages.nix
@@ -5,7 +5,6 @@
 let
   # These are attributes in compiler and packages that don't support integer-simple.
   integerSimpleExcludes = [
-    "ghc7103Binary"
     "ghc821Binary"
     "ghc844"
     "ghcjs"
@@ -43,7 +42,6 @@ in {
 
   compiler = {
 
-    ghc7103Binary = callPackage ../development/compilers/ghc/7.10.3-binary.nix { };
     ghc821Binary = callPackage ../development/compilers/ghc/8.2.1-binary.nix { };
 
     ghc822 = callPackage ../development/compilers/ghc/8.2.2.nix {
@@ -102,12 +100,6 @@ in {
   # Always get compilers from `buildPackages`
   packages = let bh = buildPackages.haskell; in {
 
-    ghc7103Binary = callPackage ../development/haskell-modules {
-      buildHaskellPackages = bh.packages.ghc7103Binary;
-      ghc = bh.compiler.ghc7103Binary;
-      compilerConfig = callPackage ../development/haskell-modules/configuration-ghc-7.10.x.nix { };
-      packageSetConfig = bootstrapPackageSet;
-    };
     ghc821Binary = callPackage ../development/haskell-modules {
       buildHaskellPackages = bh.packages.ghc821Binary;
       ghc = bh.compiler.ghc821Binary;

From d0df66ea60cf8a9543db6d393b38f2d9ec667097 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Tue, 6 Nov 2018 13:44:04 +0100
Subject: [PATCH 0711/1129] haskell-HTF: update ghc-8.6.x to latest version to
 fix the build

---
 pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix | 4 +---
 1 file changed, 1 insertion(+), 3 deletions(-)

diff --git a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
index 6635e4aefd8b..8d8b95a51a23 100644
--- a/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
+++ b/pkgs/development/haskell-modules/configuration-ghc-8.6.x.nix
@@ -64,6 +64,7 @@ self: super: {
   hspec-discover = self.hspec-discover_2_6_0;
   hspec-megaparsec = doJailbreak super.hspec-megaparsec;  # newer versions need megaparsec 7.x
   hspec-meta = self.hspec-meta_2_5_6;
+  HTF = dontCheck super.HTF_0_13_2_5; # https://github.com/skogsbaer/HTF/issues/74
   JuicyPixels = self.JuicyPixels_3_3_2;
   lens = self.lens_4_17;
   megaparsec = dontCheck (doJailbreak super.megaparsec);
@@ -99,9 +100,6 @@ self: super: {
   # https://github.com/bmillwood/haskell-src-meta/pull/80
   haskell-src-meta = doJailbreak super.haskell-src-meta;
 
-  # https://github.com/skogsbaer/HTF/issues/69
-  HTF = markBrokenVersion "0.13.2.4" super.HTF;
-
   # https://github.com/jgm/skylighting/issues/55
   skylighting-core = dontCheck super.skylighting-core;
 

From 8bfe8c45a7f826dafaa4279bbcdda377a376dbeb Mon Sep 17 00:00:00 2001
From: Marwan Aljubeh <marwan.aljubeh@gmail.com>
Date: Thu, 8 Nov 2018 16:46:29 +0000
Subject: [PATCH 0712/1129] gem-config: add iconv (#49910)

---
 pkgs/development/ruby-modules/gem-config/default.nix | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/pkgs/development/ruby-modules/gem-config/default.nix b/pkgs/development/ruby-modules/gem-config/default.nix
index b5aa0933c2e8..6f22b30f35fc 100644
--- a/pkgs/development/ruby-modules/gem-config/default.nix
+++ b/pkgs/development/ruby-modules/gem-config/default.nix
@@ -191,6 +191,10 @@ in
         [ darwin.apple_sdk.frameworks.CoreServices ];
   };
 
+  iconv = attrs: {
+    buildFlags = lib.optional stdenv.isDarwin "--with-iconv-dir=${libiconv}";
+  };
+
   # disable bundle install as it can't install anything in addition to what is
   # specified in pkgs/applications/misc/jekyll/Gemfile anyway. Also do chmod_R
   # to compensate for read-only files in site_template in nix store.

From ccfd36afba6b5fd800224349775136f5977e4df2 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 08:46:44 -0800
Subject: [PATCH 0713/1129] you-get: 0.4.1148 -> 0.4.1167

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/you-get/versions
---
 pkgs/tools/misc/you-get/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/misc/you-get/default.nix b/pkgs/tools/misc/you-get/default.nix
index 6a56d23f7490..2e033c6bc821 100644
--- a/pkgs/tools/misc/you-get/default.nix
+++ b/pkgs/tools/misc/you-get/default.nix
@@ -2,7 +2,7 @@
 
 buildPythonApplication rec {
   pname = "you-get";
-  version = "0.4.1148";
+  version = "0.4.1167";
 
   # Tests aren't packaged, but they all hit the real network so
   # probably aren't suitable for a build environment anyway.
@@ -10,7 +10,7 @@ buildPythonApplication rec {
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1ypgqaxf5qn5b3c2n4hcsiixyvvpvmpx5gny523cd5igb7h0yja5";
+    sha256 = "0lvddm62c0pwx4cksbwh2n0xzz80p26lz1xsvb4z40h7hlwaf41w";
   };
 
   meta = with stdenv.lib; {

From 5f93093d14e9628bcc3e4e0b7e0d904bf0849c86 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 08:58:00 -0800
Subject: [PATCH 0714/1129] visidata: 1.3.1 -> 1.5

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/visidata/versions
---
 pkgs/applications/misc/visidata/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/visidata/default.nix b/pkgs/applications/misc/visidata/default.nix
index dd95b231bd13..20e3c3daccb0 100644
--- a/pkgs/applications/misc/visidata/default.nix
+++ b/pkgs/applications/misc/visidata/default.nix
@@ -4,13 +4,13 @@
 buildPythonApplication rec {
   name = "${pname}-${version}";
   pname = "visidata";
-  version = "1.3.1";
+  version = "1.5";
 
   src = fetchFromGitHub {
     owner = "saulpw";
     repo = "visidata";
     rev = "v${version}";
-    sha256 = "1d5sx1kfil1vjkynaac5sjsnn9azxxw834gwbh9plzd5fwxg4dz2";
+    sha256 = "0schpfksxddbsv0s54pv1jrf151nw9kr51m41fp0ycnw7z2jqirm";
   };
 
   propagatedBuildInputs = [dateutil pyyaml openpyxl xlrd h5py fonttools

From 108de151f824b9dc34ac53aa696f681288d7c20d Mon Sep 17 00:00:00 2001
From: Michael Raskin <7c6f434c@mail.ru>
Date: Thu, 8 Nov 2018 20:16:42 +0300
Subject: [PATCH 0715/1129] firefox: 63.0 -> 63.0.1; firefox-esr: 60.2.2esr ->
 60.3.0esr

---
 pkgs/applications/networking/browsers/firefox/packages.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/networking/browsers/firefox/packages.nix b/pkgs/applications/networking/browsers/firefox/packages.nix
index 87bc770415c3..81f805feddff 100644
--- a/pkgs/applications/networking/browsers/firefox/packages.nix
+++ b/pkgs/applications/networking/browsers/firefox/packages.nix
@@ -14,10 +14,10 @@ rec {
 
   firefox = common rec {
     pname = "firefox";
-    ffversion = "63.0";
+    ffversion = "63.0.1";
     src = fetchurl {
       url = "mirror://mozilla/firefox/releases/${ffversion}/source/firefox-${ffversion}.source.tar.xz";
-      sha512 = "095nn50g72l4ihbv26qqqs2jg4ahnmd54vxvm7nxwrnkx901aji7pph6c91zfpf7df26ib1b0pqyir9vsac40sdxc8yrzm6d0lyl1m2";
+      sha512 = "29acad70259d71a924cbaf4c2f01fb034cf8090759b3a2d74a5eabc2823f83b6508434e619d8501d3930702e2bbad373581a70e2ce57aead9af77fc42766fbe2";
     };
 
     patches = nixpkgsPatches ++ [
@@ -67,7 +67,7 @@ rec {
     ffversion = "60.3.0esr";
     src = fetchurl {
       url = "mirror://mozilla/firefox/releases/${ffversion}/source/firefox-${ffversion}.source.tar.xz";
-      sha512 = "36ipksq4408mfkyzna7kkjyg70nqx0hzg8zp34kmsynl42whvsqhsfl198c34shsx9zhfsag3hzx2ihhfnj8ph8b0xdgyrmi2ijbvbx";
+      sha512 = "7ded25a38835fbd73a58085e24ad83308afee1784a3bf853d75093c1500ad46988f5865c106abdae938cfbd1fb10746cc1795ece7994fd7eba8a002158cf1bcd";
     };
 
     patches = nixpkgsPatches ++ [

From 213407d47116f954fd2c1327330f295aa2a64edf Mon Sep 17 00:00:00 2001
From: Michael Raskin <7c6f434c@mail.ru>
Date: Thu, 8 Nov 2018 20:18:32 +0300
Subject: [PATCH 0716/1129] firefox-bin: 63.0 -> 63.0.1

---
 .../browsers/firefox-bin/release_sources.nix  | 794 +++++++++---------
 1 file changed, 397 insertions(+), 397 deletions(-)

diff --git a/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix b/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix
index 54b588fb0979..9f81a2fda388 100644
--- a/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix
+++ b/pkgs/applications/networking/browsers/firefox-bin/release_sources.nix
@@ -1,995 +1,995 @@
 {
-  version = "63.0";
+  version = "63.0.1";
   sources = [
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-x86_64/ach/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-x86_64/ach/firefox-63.0.1.tar.bz2";
       locale = "ach";
       arch = "linux-x86_64";
-      sha512 = "0557937473fe8758371d21ec4b0d983ac2db59e8b9d3d627a318d3adf9a0cd0712f3e9b375f0cd6d9acf3f39b0c42fbcdb31364c5973916c7287f618a5f074ec";
+      sha512 = "fcf06e003f7e3bfc79288d9f0199ad2ca13a91eee718437d25c745381dbb351483b992b0cad929e9c869d4a993eee66b2206ddb6e98023f12f4351f41e61313b";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-x86_64/af/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-x86_64/af/firefox-63.0.1.tar.bz2";
       locale = "af";
       arch = "linux-x86_64";
-      sha512 = "4b0d715ba2a7edd648bcc2c396ea764e8a29fce69d526803e6621053f3886df44d758fdbf2c8af8a9e3acd307e10dcdcf3e13eff0e60bce28885b699cf2426d0";
+      sha512 = "8b8515147df6deaff4356fee727acb377c3f46cc288271da813f6bb752a3a62585262d0e5a5760d6bc5c8d6f7e84b2d76825ff55dab8bdb5e20fe345230a3bc0";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-x86_64/an/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-x86_64/an/firefox-63.0.1.tar.bz2";
       locale = "an";
       arch = "linux-x86_64";
-      sha512 = "79665a9586e0fceacb0a49560d0fc2a72a76187799563b0f8ef972043020744dafc971cb94b52b30df6056673aea4e0885f994d55c99c7976f9f7805c30e5796";
+      sha512 = "c532a212522ad51e0718339e1962f275b49d15a0e67cf397c1fc9dfdfddeb746a59572ef2cf1661f480736ecb7a77ce7da62f65f3e7898e2fe53321512820a70";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-x86_64/ar/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-x86_64/ar/firefox-63.0.1.tar.bz2";
       locale = "ar";
       arch = "linux-x86_64";
-      sha512 = "d338b5fdf1dc4bb920bd372ba69934ddf39bdc7e37b725a010fbc9fd71ff487181d898e863c7ce9a21039d51d256c4ec1ca2cdcf0da078788243e867b0bc151f";
+      sha512 = "35fbbb6d2f53293eaee86d9d402d556abea5a5c62a1a282f35ea97d7afee57e2b222ad96f2c91ac8b30f6501e96d8702a52e2f96556abd838c244a36720d123f";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-x86_64/as/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-x86_64/as/firefox-63.0.1.tar.bz2";
       locale = "as";
       arch = "linux-x86_64";
-      sha512 = "2022a993455456d0c900ddaf8e6a74a3d5478edec456df0cba627dfa1ad41f0274053c21b9c1ca4ca6b640e26993d60ffcc2f879c68143699f6e31d43f7acc19";
+      sha512 = "86fc2f0b5089997dff76f5b5b4ef1e4be465da16a8fc119ab88ddf96cf6fbdfb4dca1e384ce336a033ca5430f041c60d34afaa3dfee9a8afb93d26c7717314b4";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-x86_64/ast/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-x86_64/ast/firefox-63.0.1.tar.bz2";
       locale = "ast";
       arch = "linux-x86_64";
-      sha512 = "1eca2ca8385215a886a16de77988d76e41b7257a41fceacd3df18e21ba82c8c67df045aa8201a2b18032f1690997b4b8bfb55a80c47341335aab45cbb15eefd1";
+      sha512 = "ba960a426f0c6ccd703e3b12bc08c29dff71cb829a66346cceb689233c62777ed22ea047624833f6584867cf78c040684cccbae99a9518eaff069af756eeb983";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-x86_64/az/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-x86_64/az/firefox-63.0.1.tar.bz2";
       locale = "az";
       arch = "linux-x86_64";
-      sha512 = "3788f68a69a8605e3185e5e776edf3339a650e010fc4810f574e5c0a62c9aaf30c84151ea169c005c1f381c3eaa4c3a8f6758c336a9423cfeaffb83aef96dc73";
+      sha512 = "6e2e9231fe88fed849c2d1850f24ab169a901b68be4bde9d9875d2cb736ae4c1456f53c2964f4f00b80ecf2e46543b4cd25cfed31cb04dbe4fae3a040432352c";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-x86_64/be/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-x86_64/be/firefox-63.0.1.tar.bz2";
       locale = "be";
       arch = "linux-x86_64";
-      sha512 = "f538b9f8d566f7f3c5bc92a24127966d618b47dd368ecbb4fae0e5c90045bb75cb1b921edd865227ca6c34e3e2e037acb81d9f7368cfdee59cbdcf6ff2798ffe";
+      sha512 = "379ec5a79a4af1b141485230b9c5af0b622845df43499616417debead4db466ad16f7a63c1c0e8c09b4bddae288772bfcd2aea115a780a551e90001b2d353364";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-x86_64/bg/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-x86_64/bg/firefox-63.0.1.tar.bz2";
       locale = "bg";
       arch = "linux-x86_64";
-      sha512 = "497a95b4309e60093ec3f1b0a72ac05d1b9a47d78799ca33492394c7bf0b81e64e60103218c479b4ff3a3b2acfcf95493f43be23feb89fbdfebe42ec8a124132";
+      sha512 = "4aed2144069d39f00a0ab2f45ca7532f9f97684ff18cb2596b20b6639edbd793e0c4857b784657c354caa7503c2df6497ef0f298fbf438954c2c46de3c2f29b1";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-x86_64/bn-BD/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-x86_64/bn-BD/firefox-63.0.1.tar.bz2";
       locale = "bn-BD";
       arch = "linux-x86_64";
-      sha512 = "3c2123b34ebb2e3c6def220c679069b31b3d7a2110ec2eadea88a930b6582fcab0452bce97f0302a39af324ca1b58ec49ed49aa865ade7d814152bf16fd1cadc";
+      sha512 = "bf87308c72330e32efe1473d879f36097fc1d0e697ab6f9034a03c5e872353ab5c2cb7391aa274b35e08c6102986a08ede184810e821f8ba02838d469b623528";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-x86_64/bn-IN/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-x86_64/bn-IN/firefox-63.0.1.tar.bz2";
       locale = "bn-IN";
       arch = "linux-x86_64";
-      sha512 = "55fdb9a3efe54db994706fb8345918f5c19f1a24f77107e6819dd1272a09900ef3534897c1d3b38c331c94813446694b2422356ae6ca2356338d6253e15a37e1";
+      sha512 = "0063c6dce614b8efa9a663c60d2d393816f6a65c87aa1a1a6a96f501cfc7e86a05b038ab5173b13bd86a2a02dcb3ac6ed15bb4e4c8eefd371027e07cb31c1e5c";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-x86_64/br/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-x86_64/br/firefox-63.0.1.tar.bz2";
       locale = "br";
       arch = "linux-x86_64";
-      sha512 = "c35e40bfd6b1fb06c8426c6f9f834f8a6d658ced8892c575079d852dbb2e24f09657b1f37bc8af3588cc2c8b9ba1924cf5a85c7be0d6db4334c592f03abeb142";
+      sha512 = "93c3a9a59386c211c32c9aec1aeca3ab0a3f0b878001f6485a42283c2ca6fedc6847d7c2fddea870da462967dfddb94f518cbe0f115838b313d803ae8f12df65";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-x86_64/bs/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-x86_64/bs/firefox-63.0.1.tar.bz2";
       locale = "bs";
       arch = "linux-x86_64";
-      sha512 = "ea63659f3a930b4d0a8add69cd8ca1a3d98e015aab1b6bc607c8e0fbd610de8fdc49ac290c61bcd762092d4f56554f70f029a18be4bcf426cafffc6fe9677699";
+      sha512 = "d191539482457407ae37e47b52b4d79eb99ebf2ed2999921c695268b6e3dc75b96ba93131f70666b29a3c2e73bad0a470abfd99c2f51d2ea3eb4af52296846fe";
     }
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       locale = "rm";
       arch = "linux-i686";
-      sha512 = "67438f3cb1a89a0258890448de6d16be5f79291d4c0989691d9c8f38966a7a4ba2f8eaccb26ee4458a81a733ae9513555a22f8b57652b4fce1eb1e3ab2368848";
+      sha512 = "24dd07cee63e1a3370b970c5a2e0c215e6587ff17ca0438bb8b52313eeb52e9b241c56fb31740602067b635b314cf20d63e03fe269ae35b4374f2043c8292af9";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/ro/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/ro/firefox-63.0.1.tar.bz2";
       locale = "ro";
       arch = "linux-i686";
-      sha512 = "3cdc7f593af3bbd858285237a9ffaa07aa76cbfc67c0f7d22d5cf261a19756ba3aa8971d54a10b820344beb509810b601faf0cc89c86636bc60ea1a6d8421873";
+      sha512 = "25c0d057571ca970344f91a07ee1437e290ffeaec2c15a3b106e4c690afcdf7b3bc9f92f28b11d179cb8912697b1d7e255a6596bebbe8e1488dcf4347cc7fecf";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/ru/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/ru/firefox-63.0.1.tar.bz2";
       locale = "ru";
       arch = "linux-i686";
-      sha512 = "7b6b03cca2fe3887d7ee86eeb8ee699157a6cd828108737e26724a48af72cf3fe326024f41c6afc13f7e332c262a4e991728ad5d46ac6fb6942c5c3b4ea93a9c";
+      sha512 = "7110c2ff51b8d5539018383560c113e63ba1a870510501b0bfa1294bd5c19a992d07786732bbcbb820ece4045fb826bfcc778200dd3ad63504e64cc2d85deb4c";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/si/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/si/firefox-63.0.1.tar.bz2";
       locale = "si";
       arch = "linux-i686";
-      sha512 = "10f9fe43304931dbce1d0073ec4e827f369291b3705b322a3f3ba8f7002a974c019be8f5a594d8c88add527667d9295a27e85f2b1072e16ef1720e9e433111b3";
+      sha512 = "6dcb0eccef3c582545e7de5d9c33c80690db698a9b28dc7fe654187b60e69a41309c3326eb2b73ed6869a4278c22db369e12a8fca5f2553327b2b6fa7fdf389d";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/sk/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/sk/firefox-63.0.1.tar.bz2";
       locale = "sk";
       arch = "linux-i686";
-      sha512 = "6b90fd21c51d48ca997ad47025aef3a4280e30152a0f18d0ab8948e055b80e5aa7cf1374b2eeeb1432d8892fb07de505adb9ae6c57e776ced4c429859577f040";
+      sha512 = "9e7b74a0c495cc6247c5d37931d6038508186070de80a935d2a39540960d3d57996f47497fa430b24cc9164bae5bf5e761558cf60231594ab9637956a26326ae";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/sl/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/sl/firefox-63.0.1.tar.bz2";
       locale = "sl";
       arch = "linux-i686";
-      sha512 = "55faeb2d5310266395a442d0d9ce4a1020197d0ce7655caa8d00efd022db9e1c9926b7418f4cfa380d04e1971ed47e7025d434a36ca0fe6f58f02be7f0e26a69";
+      sha512 = "6c65c39d0ae8a398e25733f0be9180dad1bc17d3ffa58f02844d6750bbb64a0d70f31b565e3ed606b6452431d0aa705f671b45dc2280cbb90aaba741b60d82a9";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/son/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/son/firefox-63.0.1.tar.bz2";
       locale = "son";
       arch = "linux-i686";
-      sha512 = "63f104da43ff4103b40e271de6c962fae3d77891f50fe5b39698d3c2e382b4234dad41a3a64794015ad88d34a7e2b819c0ecb62b1bb44a4d8e83eadbc1803151";
+      sha512 = "55ea357bf7f6ddb7e8b51796ef199168c89ff5959e5e64fdbe8e362bfb1efa19f9f407c20510139c52cf44058a5c4823b2c1c10821a2ee06a18b19d48a85a403";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/sq/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/sq/firefox-63.0.1.tar.bz2";
       locale = "sq";
       arch = "linux-i686";
-      sha512 = "534ce38e5dec85de50e9dd541f6d8445e95fdfac074a51866c993e97d020b9a310abebffa2162fc513572d202f9fec8e3a267207bf9c401b27c8541534ee2aaf";
+      sha512 = "5fd975a71f9899b9eb90f46adaab044c2d21ac64cc71558748368c41bc50ea8ae688fffb0579693633f1ed82970917e1b46a41133af3133950dfb051c33556a1";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/sr/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/sr/firefox-63.0.1.tar.bz2";
       locale = "sr";
       arch = "linux-i686";
-      sha512 = "1174da8c998cdd62370bb8c80c6a47360cdcc84144b03ab33f10367b5622ecf6ff3058e4f525e46ddb523f13e29b6fe557b7442dfec92956b34eaf507bd5f8c8";
+      sha512 = "e8cc283b6d87718f81a619e0c54a2e440e21940375f8eabb318d24c22b5e04fa387d27dd6b2c28c98c65a94cc8aa1966ea8c6ac346f3012df0a6f268c9aac67a";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/sv-SE/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/sv-SE/firefox-63.0.1.tar.bz2";
       locale = "sv-SE";
       arch = "linux-i686";
-      sha512 = "7c24f0d4552ca7bc3076b9b0485c757e0547713a58d09cd568e506e37dd6133c5c7a7ad3edcffdd387cc0c5661d3602f4252d778174bf78812788ad1daa9384a";
+      sha512 = "324c7b8b0b313d9de9d83f05d2e802c9733537a5bc1a77bc7335f2551f1466da9c276622a848440e7a353f944e463e1b323fea7655985cf755b38c80e17fe335";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/ta/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/ta/firefox-63.0.1.tar.bz2";
       locale = "ta";
       arch = "linux-i686";
-      sha512 = "4387b1cfd77da777a3257e714b014c686ad8c5ff1edb7ba0e2d01f62621eaec92766ccc3bbeb93be45c0b414b9b31676692e75b366a7ed0fb8e0526f95126807";
+      sha512 = "6f35862c7052f55b06ffcf0205331288c4278fd2de713c57a509543a02394978a9726fe747709f4972ee2c43a5a001c0f7c5e58e63269047abcb5f4f26e78ff3";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/te/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/te/firefox-63.0.1.tar.bz2";
       locale = "te";
       arch = "linux-i686";
-      sha512 = "8ad96e47cfc1066d27560a5ad26659dba098724374605520198d580867be3bcc05a63120865745055ef00163b8c7cb97ac35f18bfcdc3d171e7eed6a05f50855";
+      sha512 = "4a5534580d90af3f27ab1d66f54f38782179ab239ad913153660539591001db9dad409ef849df97f5f382388f559eef336c2f9245180704caf9d414e0965c17c";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/th/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/th/firefox-63.0.1.tar.bz2";
       locale = "th";
       arch = "linux-i686";
-      sha512 = "74272739144c6ae69dba8229420894b10e0dd9d75ae386f1221b17f8e54baf8c3d921591c5707ab5d8847deedad2daa3061fff03add11a2e450fdf691dd49f9a";
+      sha512 = "1a21c20e0f410aaff94eb4dee6f26555515c0095aae9cc5e7ec8c90e57bbc73e8dd5a931b9f6fae52d5ebf7de4a3aea2176b973effe3e65e844e1936387ed8d6";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/tr/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/tr/firefox-63.0.1.tar.bz2";
       locale = "tr";
       arch = "linux-i686";
-      sha512 = "0cddf14cd7a7cd4594ca04d1416b3ab32db42a287e62b68197fe8e08078999028e47074e563302c77e480d02563932d20ceffdd89c53b53c79221f3cc309e802";
+      sha512 = "1e69c3de2d1836082369994ea843e164212527a13808153b16c02e5a3986a3f11c87abbe0fb2eb9077f1273ff14cbb545856c376945a9e40143217896a444e17";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/uk/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/uk/firefox-63.0.1.tar.bz2";
       locale = "uk";
       arch = "linux-i686";
-      sha512 = "17e3d498e900ddfc4b00e3ea99b7b2f55c0252e88eede45b47b020293131d6adf5642c1bf94c39bba5b9042e2f9e20ba5399e6717e6965e65d90c4717a236832";
+      sha512 = "87c4e1b907db9bdce6d8dcd2e4c70d57a4e8ce5125473727582987c2eea25543d2d97596d0f3c776962c003f2a5356260d3d9f18410448dec4198fead5461da1";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/ur/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/ur/firefox-63.0.1.tar.bz2";
       locale = "ur";
       arch = "linux-i686";
-      sha512 = "cef0ade8282d3360e27d51b4c5487882ae8dc78c598b4150cd3053cc442843cd58f5c362ed6c5ea8362517633dfbb2751a894c6cbc45bac796c181f32f095dc8";
+      sha512 = "533dc9eefd4b7604d92420333aa4f6e1b741ac545814ec1a868393e321d3e84e5d3ba475a98cf1e226b746f1f6b5b42db082d7a6d65b10971b2576e0a3d4cc69";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/uz/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/uz/firefox-63.0.1.tar.bz2";
       locale = "uz";
       arch = "linux-i686";
-      sha512 = "e8dc2b26f35f5ddbc93e4891d7b9b4dfd932ba6c7d1da19a6bec1f5c259f78c1c3105d9f2c89cd97c91f4032489f95a339ba5a22dc4daf3c948a968bf580d4bf";
+      sha512 = "e3830088e08eb8e16e6d7196e153eddc85bfb1bab3a29904aeb59c427215fdf82d7a5e50ab9db5e7abaa74b88ca7a4c002fef11883ab000b3b10814650d337e6";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/vi/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/vi/firefox-63.0.1.tar.bz2";
       locale = "vi";
       arch = "linux-i686";
-      sha512 = "6dc0945c634052824326cfe8558d1eddb192dbb4eca9eac458b8cfb3680cb1cf5537dd8ff4237ed32264d730e95287d9504fd0b1528fa33907dc1a2b4558ea61";
+      sha512 = "5cfce3e3a278964aec4b8b863caa60618691fcd959009395a705b8ccbc51fb7b30adcc84de3be6e2627329d0d61fc7ab7d6c2ab15f93c255c336f327b8aa8a13";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/xh/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/xh/firefox-63.0.1.tar.bz2";
       locale = "xh";
       arch = "linux-i686";
-      sha512 = "3792ce77db9de5080437b2aad6537f00963593ff98cdd47a145ffef8243a5ea23e8cd42f82e217885601b04df4c17d833aa88b9d15cad7a6840978af3a756b05";
+      sha512 = "61630ecd035d69866d0934f3a4ef4b574c4ae1205af3c130889d1eb132066fd2068a4583eb87b9e214f033184a671bb973368faf417aaa3018e8badd16295592";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/zh-CN/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/zh-CN/firefox-63.0.1.tar.bz2";
       locale = "zh-CN";
       arch = "linux-i686";
-      sha512 = "8043f8900ef35f85cb05f2092829899d119e079210dcb8bd9d369c7d73ff901e80afc4eecb25421058b65e5e267f7cf671c62cdec5849c2ff0da104f4ec12ad2";
+      sha512 = "968987d12dcf4a9ac0e078132ae50b321987c990c9bd8cd3388d981c7e5dc94d26c7af14492e356d2b984badd595998bc7e9f955e0772534b5adf31886c319b6";
     }
-    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0/linux-i686/zh-TW/firefox-63.0.tar.bz2";
+    { url = "http://archive.mozilla.org/pub/firefox/releases/63.0.1/linux-i686/zh-TW/firefox-63.0.1.tar.bz2";
       locale = "zh-TW";
       arch = "linux-i686";
-      sha512 = "614b7835c82f80dd27c841023aca6aa8580bdadac8241f08fc053fe7657f069d6337e3edbe0bebcc4018d47f3d9f2d328176add89aacd9847393ebd21f3e9230";
+      sha512 = "286919b5f69f2585c291c0736dec6b37493a809e7e2b342743523d73e749ac4e860236da061ffb14c28452884f72055d47084fa3455898f9afee798c1ec7cdea";
     }
     ];
 }

From 8d1babca379d0bcb0e62f3d7fa4f0bfbdbd72ad2 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 09:28:44 -0800
Subject: [PATCH 0717/1129] xmr-stak: 2.5.1 -> 2.5.2

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/xmr-stak/versions
---
 pkgs/applications/misc/xmr-stak/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/xmr-stak/default.nix b/pkgs/applications/misc/xmr-stak/default.nix
index ed90689da1ea..8149c6fe8531 100644
--- a/pkgs/applications/misc/xmr-stak/default.nix
+++ b/pkgs/applications/misc/xmr-stak/default.nix
@@ -12,13 +12,13 @@ in
 
 stdenv'.mkDerivation rec {
   name = "xmr-stak-${version}";
-  version = "2.5.1";
+  version = "2.5.2";
 
   src = fetchFromGitHub {
     owner = "fireice-uk";
     repo = "xmr-stak";
     rev = "${version}";
-    sha256 = "0n042vxrr52k6x86h06f298flmxghsfh2a3kqnc41r7p7qybgjj8";
+    sha256 = "0fk51s0789arwkidgx4c5y4shdvawwc132dzn8z71fpi6kh6ggvm";
   };
 
   NIX_CFLAGS_COMPILE = "-O3";

From 2f742cbd3536a85c7527edb14b796461b5f864df Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 09:44:16 -0800
Subject: [PATCH 0718/1129] toxic: 0.8.2 -> 0.8.3

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/toxic/versions
---
 .../networking/instant-messengers/toxic/default.nix           | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/instant-messengers/toxic/default.nix b/pkgs/applications/networking/instant-messengers/toxic/default.nix
index 646b41cfe75a..cbf2dd7d99a2 100644
--- a/pkgs/applications/networking/instant-messengers/toxic/default.nix
+++ b/pkgs/applications/networking/instant-messengers/toxic/default.nix
@@ -4,13 +4,13 @@
 
 stdenv.mkDerivation rec {
   name = "toxic-${version}";
-  version = "0.8.2";
+  version = "0.8.3";
 
   src = fetchFromGitHub {
     owner  = "Tox";
     repo   = "toxic";
     rev    = "v${version}";
-    sha256 = "0fwmk945nip98m3md58y3ibjmzfq25hns3xf0bmbc6fjpww8d5p5";
+    sha256 = "09l2j3lwvrq7bf3051vjsnml9w63790ly3iylgf26gkrmld6k31w";
   };
 
   makeFlags = [ "PREFIX=$(out)"];

From 66e4377c5f16cf40d4bd269b3bac8f3f0b86ccb1 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 09:56:15 -0800
Subject: [PATCH 0719/1129] texmaker: 5.0.2 -> 5.0.3

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/texmaker/versions
---
 pkgs/applications/editors/texmaker/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/editors/texmaker/default.nix b/pkgs/applications/editors/texmaker/default.nix
index c5f691e95c24..036bd8e546c4 100644
--- a/pkgs/applications/editors/texmaker/default.nix
+++ b/pkgs/applications/editors/texmaker/default.nix
@@ -2,12 +2,12 @@
 
 stdenv.mkDerivation rec {
   pname = "texmaker";
-  version = "5.0.2";
+  version = "5.0.3";
   name = "${pname}-${version}";
 
   src = fetchurl {
     url = "http://www.xm1math.net/texmaker/${name}.tar.bz2";
-    sha256 = "0y81mjm89b99pr9svcwpaf4iz2q9pc9hjas5kiwd1pbgl5vqskm9";
+    sha256 = "0vrj9w5lk3vf6138n5bz8phmy3xp5kv4dq1rgirghcf4hbxdyx30";
   };
 
   buildInputs = [ qtbase qtscript poppler zlib ];

From 068374c0aedc95ba553c8bd4303d4ccbd5079de2 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Domen=20Ko=C5=BEar?= <domen@dev.si>
Date: Thu, 8 Nov 2018 15:37:18 +0000
Subject: [PATCH 0720/1129] Add chrome-token-signing

---
 .../security/chrome-token-signing/default.nix | 27 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 29 insertions(+)
 create mode 100644 pkgs/tools/security/chrome-token-signing/default.nix

diff --git a/pkgs/tools/security/chrome-token-signing/default.nix b/pkgs/tools/security/chrome-token-signing/default.nix
new file mode 100644
index 000000000000..b9e42bb6fa74
--- /dev/null
+++ b/pkgs/tools/security/chrome-token-signing/default.nix
@@ -0,0 +1,27 @@
+{ stdenv, fetchFromGitHub, qmake, pcsclite, pkgconfig }:
+
+stdenv.mkDerivation rec {
+  name = "chrome-token-signing-${version}";
+  version = "1.0.7";
+
+  src = fetchFromGitHub {
+    owner = "open-eid";
+    repo = "chrome-token-signing";
+    rev = "v${version}";
+    sha256 = "1icbr5gyf7qqk1qjgcrf6921ws84j5h8zrpzw5mirq4582l5gsav";
+  };
+
+  buildInputs = [ qmake pcsclite pkgconfig ];
+  dontUseQmakeConfigure = true;
+
+  patchPhase = ''
+    substituteInPlace host-linux/ee.ria.esteid.json --replace /usr $out
+  '';
+
+  installPhase = ''
+    install -D -t $out/bin host-linux/chrome-token-signing
+    # TODO: wire these up
+    install -D -t $out/etc/chromium/native-messaging-hosts host-linux/ee.ria.esteid.json
+    install -D -t $out/lib/mozilla/native-messaging-hosts host-linux/ff/ee.ria.esteid.json
+  '';
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 49f2a13346a3..faae4c93d5a3 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -22829,6 +22829,8 @@ with pkgs;
 
   chrome-gnome-shell = callPackage  ../desktops/gnome-3/extensions/chrome-gnome-shell {};
 
+  chrome-token-signing = libsForQt5.callPackage ../tools/security/chrome-token-signing {};
+
   NSPlist = callPackage ../development/libraries/NSPlist {};
 
   PlistCpp = callPackage ../development/libraries/PlistCpp {};

From 6e5e61123fb46867cfbb13ba56147a5d96156b76 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 10:24:26 -0800
Subject: [PATCH 0721/1129] snapper: 0.7.2 -> 0.8.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/snapper/versions
---
 pkgs/tools/misc/snapper/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/misc/snapper/default.nix b/pkgs/tools/misc/snapper/default.nix
index 80b66026848e..ff7518b04dea 100644
--- a/pkgs/tools/misc/snapper/default.nix
+++ b/pkgs/tools/misc/snapper/default.nix
@@ -5,13 +5,13 @@
 
 stdenv.mkDerivation rec {
   name = "snapper-${version}";
-  version = "0.7.2";
+  version = "0.8.0";
 
   src = fetchFromGitHub {
     owner = "openSUSE";
     repo = "snapper";
     rev = "v${version}";
-    sha256 = "1dm1kf4wrbcaaagxgbc8q0f5j9dq3bmp6ycl7zx8p70s4nv3xnbc";
+    sha256 = "1blllmkwh13pnf3hxi1p2az5i77arbm2661n0rd0569s6kf5brb7";
   };
 
   nativeBuildInputs = [

From e681d3a6da63e34f2c66c65b345b2a827467af18 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 10:52:13 -0800
Subject: [PATCH 0722/1129] spoofer: 1.3.3 -> 1.4.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/spoofer/versions
---
 pkgs/tools/networking/spoofer/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/networking/spoofer/default.nix b/pkgs/tools/networking/spoofer/default.nix
index ad03e9266c68..1043007e1dd2 100644
--- a/pkgs/tools/networking/spoofer/default.nix
+++ b/pkgs/tools/networking/spoofer/default.nix
@@ -6,12 +6,12 @@ in
 
 stdenv.mkDerivation rec {
   pname = "spoofer";
-  version = "1.3.3";
+  version = "1.4.0";
   name = "${pname}-${version}";
 
   src = fetchurl {
     url = "https://www.caida.org/projects/spoofer/downloads/${name}.tar.gz";
-    sha256 = "0zpqn3jj14grwggzl235smm93d2lm5r5cr6z6wydw1045m5rlvrp";
+    sha256 = "0d745w7cy83hw7j950dah4h5qzclcibj16dik2gpsjnw1zq63cna";
   };
 
   nativeBuildInputs = [ pkgconfig ];

From 72cbe8be4baefd5e4e1382c06ad012d89ced5f70 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 10:57:14 -0800
Subject: [PATCH 0723/1129] transmission-remote-gtk: 1.3.1 -> 1.4.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/transmission-remote-gtk/versions
---
 .../networking/p2p/transmission-remote-gtk/default.nix        | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/p2p/transmission-remote-gtk/default.nix b/pkgs/applications/networking/p2p/transmission-remote-gtk/default.nix
index 3ddbe9be4fc6..fdd00270d0eb 100644
--- a/pkgs/applications/networking/p2p/transmission-remote-gtk/default.nix
+++ b/pkgs/applications/networking/p2p/transmission-remote-gtk/default.nix
@@ -5,13 +5,13 @@
 
 stdenv.mkDerivation rec {
   name = "transmission-remote-gtk-${version}";
-  version = "1.3.1";
+  version = "1.4.0";
 
   src = fetchFromGitHub {
     owner = "transmission-remote-gtk";
     repo = "transmission-remote-gtk";
     rev = "${version}";
-    sha256 = "02q0vl7achx9rpd0iv0347h838bwzm7aj4k04y88g3bh8fi3cddh";
+    sha256 = "126s7aqh9j06zvnwhjbql5x9ibz05pdrrzwb9c6h4qndvr8iqqff";
   };
 
   preConfigure = "./autogen.sh";

From 814c68a503f4a4bc6cfc73740c9d518b63600579 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 11:00:39 -0800
Subject: [PATCH 0724/1129] tgt: 1.0.73 -> 1.0.74

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/tgt/versions
---
 pkgs/tools/networking/tgt/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/networking/tgt/default.nix b/pkgs/tools/networking/tgt/default.nix
index ce9ed7ef53a1..b2ef684f5895 100644
--- a/pkgs/tools/networking/tgt/default.nix
+++ b/pkgs/tools/networking/tgt/default.nix
@@ -2,7 +2,7 @@
 , docbook_xsl }:
 
 let
-  version = "1.0.73";
+  version = "1.0.74";
 in stdenv.mkDerivation rec {
   name = "tgt-${version}";
 
@@ -10,7 +10,7 @@ in stdenv.mkDerivation rec {
     owner = "fujita";
     repo = "tgt";
     rev = "v${version}";
-    sha256 = "0alrdrklh5wq8x4xbp30zwnxkp0brx1mjkbp70dhaz0zbzvyydr0";
+    sha256 = "1k146w49dda77fd8frmc0nyr07ca1wh5vcw59fjid6knaj9vgck5";
   };
 
   buildInputs = [ libxslt systemd libaio docbook_xsl ];

From 6d713164107258dd498badaf8e5ab085e45d824a Mon Sep 17 00:00:00 2001
From: Daiderd Jordan <daiderd@gmail.com>
Date: Thu, 8 Nov 2018 20:02:44 +0100
Subject: [PATCH 0725/1129] nginx: init ngx_aws_auth at 2.1.1

---
 pkgs/servers/http/nginx/generic.nix |  4 +---
 pkgs/servers/http/nginx/modules.nix | 11 ++++++++++-
 2 files changed, 11 insertions(+), 4 deletions(-)

diff --git a/pkgs/servers/http/nginx/generic.nix b/pkgs/servers/http/nginx/generic.nix
index 643e7ed719a4..25ff20635aff 100644
--- a/pkgs/servers/http/nginx/generic.nix
+++ b/pkgs/servers/http/nginx/generic.nix
@@ -17,9 +17,7 @@ stdenv.mkDerivation {
     inherit sha256;
   };
 
-
-  buildInputs =
-    [ openssl zlib pcre libxml2 libxslt gd geoip ]
+  buildInputs = [ openssl zlib pcre libxml2 libxslt gd geoip ]
     ++ concatMap (mod: mod.inputs or []) modules;
 
   configureFlags = [
diff --git a/pkgs/servers/http/nginx/modules.nix b/pkgs/servers/http/nginx/modules.nix
index 15822a0387b9..6b4510bfe824 100644
--- a/pkgs/servers/http/nginx/modules.nix
+++ b/pkgs/servers/http/nginx/modules.nix
@@ -131,6 +131,15 @@
     };
   };
 
+  ngx_aws_auth = {
+    src = fetchFromGitHub {
+      owner = "anomalizer";
+      repo = "ngx_aws_auth";
+      rev = "2.1.1";
+      sha256 = "10z67g40w7wpd13fwxyknkbg3p6hn61i4v8xw6lh27br29v1y6h9";
+    };
+  };
+
   opentracing = {
     src =
       let src' = fetchFromGitHub {
@@ -226,7 +235,7 @@
       rev = "7778f0125974befbc83751d0e1cadb2dcea57601";
       sha256 = "1x5hm6r0dkm02ffny8kjd7mmq8przyd9amg2qvy5700x6lb63pbs";
     };
-  }; 
+  };
 
   statsd = {
     src = fetchFromGitHub {

From e9da929e410db4cc5474fc4048b43d16cbc9f103 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 8 Nov 2018 20:29:09 +0100
Subject: [PATCH 0726/1129] cwebbin: add license

---
 lib/licenses.nix                                | 5 +++++
 pkgs/development/tools/misc/cwebbin/default.nix | 1 +
 2 files changed, 6 insertions(+)

diff --git a/lib/licenses.nix b/lib/licenses.nix
index 092cbbbdb25a..e3803c098c72 100644
--- a/lib/licenses.nix
+++ b/lib/licenses.nix
@@ -13,6 +13,11 @@ lib.mapAttrs (n: v: v // { shortName = n; }) rec {
    * add it to this list. The URL mentioned above is a good source for inspiration.
    */
 
+  abstyles = spdx {
+    spdxId = "Abstyles";
+    fullName = "Abstyles License";
+  };
+
   afl21 = spdx {
     spdxId = "AFL-2.1";
     fullName = "Academic Free License v2.1";
diff --git a/pkgs/development/tools/misc/cwebbin/default.nix b/pkgs/development/tools/misc/cwebbin/default.nix
index a952475b9673..d8deb75d2d41 100644
--- a/pkgs/development/tools/misc/cwebbin/default.nix
+++ b/pkgs/development/tools/misc/cwebbin/default.nix
@@ -46,5 +46,6 @@ stdenv.mkDerivation rec {
     description = "Literate Programming in C/C++";
     platforms = with platforms; unix;
     maintainers = with maintainers; [ vrthra ];
+    license = licenses.abstyles;
   };
 }

From 247e3b30825957572cbee9446b5a766edd15739b Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 8 Nov 2018 20:31:31 +0100
Subject: [PATCH 0727/1129] eggdbus: add license

---
 pkgs/development/tools/misc/eggdbus/default.nix | 9 +++++----
 1 file changed, 5 insertions(+), 4 deletions(-)

diff --git a/pkgs/development/tools/misc/eggdbus/default.nix b/pkgs/development/tools/misc/eggdbus/default.nix
index 3b1c70b4ac33..7c7e53404343 100644
--- a/pkgs/development/tools/misc/eggdbus/default.nix
+++ b/pkgs/development/tools/misc/eggdbus/default.nix
@@ -2,18 +2,19 @@
 
 stdenv.mkDerivation rec {
   name = "eggdbus-0.6";
-  
+
   src = fetchurl {
     url = "https://hal.freedesktop.org/releases/${name}.tar.gz";
     sha256 = "118hj63ac65zlg71kydv4607qcg1qpdlql4kvhnwnnhar421jnq4";
   };
-  
+
   nativeBuildInputs = [ pkgconfig ];
   buildInputs = [ glib dbus dbus-glib ];
 
-  meta = {
+  meta = with stdenv.lib; {
     homepage = https://hal.freedesktop.org/releases/;
     description = "D-Bus bindings for GObject";
-    platforms = stdenv.lib.platforms.linux;
+    platforms = platforms.linux;
+    license = licenses.lgpl2;
   };
 }

From aeaf15dc68c32349bf18667fe834def6deffcef9 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 8 Nov 2018 20:33:03 +0100
Subject: [PATCH 0728/1129] icon-naming-utils: add license

---
 pkgs/development/tools/misc/icon-naming-utils/default.nix | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/tools/misc/icon-naming-utils/default.nix b/pkgs/development/tools/misc/icon-naming-utils/default.nix
index 37bc73172da2..5fd0fe8be2f2 100644
--- a/pkgs/development/tools/misc/icon-naming-utils/default.nix
+++ b/pkgs/development/tools/misc/icon-naming-utils/default.nix
@@ -7,7 +7,7 @@ stdenv.mkDerivation rec {
     url = "http://tango.freedesktop.org/releases/${name}.tar.gz";
     sha256 = "071fj2jm5kydlz02ic5sylhmw6h2p3cgrm3gwdfabinqkqcv4jh4";
   };
-  
+
   buildInputs = [perl XMLSimple librsvg];
 
   postInstall =
@@ -20,5 +20,6 @@ stdenv.mkDerivation rec {
   meta = with stdenv.lib; {
     homepage = http://tango.freedesktop.org/Standard_Icon_Naming_Specification;
     platforms = with platforms; linux ++ darwin;
+    license = licenses.gpl2;
   };
 }

From 7676dc7b9b360b4b1f08b3933c246a34fb81bf9d Mon Sep 17 00:00:00 2001
From: Austin Seipp <aseipp@pobox.com>
Date: Thu, 8 Nov 2018 13:20:05 -0600
Subject: [PATCH 0729/1129] ber_metaocaml: 104 -> 107

Signed-off-by: Austin Seipp <aseipp@pobox.com>
---
 .../ocaml/{ber-metaocaml-104.nix => ber-metaocaml.nix} | 10 +++++-----
 pkgs/top-level/all-packages.nix                        |  2 +-
 2 files changed, 6 insertions(+), 6 deletions(-)
 rename pkgs/development/compilers/ocaml/{ber-metaocaml-104.nix => ber-metaocaml.nix} (85%)

diff --git a/pkgs/development/compilers/ocaml/ber-metaocaml-104.nix b/pkgs/development/compilers/ocaml/ber-metaocaml.nix
similarity index 85%
rename from pkgs/development/compilers/ocaml/ber-metaocaml-104.nix
rename to pkgs/development/compilers/ocaml/ber-metaocaml.nix
index e6c688940368..2eeb6ad84084 100644
--- a/pkgs/development/compilers/ocaml/ber-metaocaml-104.nix
+++ b/pkgs/development/compilers/ocaml/ber-metaocaml.nix
@@ -8,16 +8,16 @@ in
 stdenv.mkDerivation rec {
 
   name = "ber-metaocaml-${version}";
-  version = "104";
+  version = "107";
 
   src = fetchurl {
-    url = "https://caml.inria.fr/pub/distrib/ocaml-4.04/ocaml-4.04.0.tar.gz";
-    sha256 = "1pi2hdm9lxhn45qvfqfss1hpa4jijm14qgmrgajsadxqdiplhqyb";
+    url = "https://caml.inria.fr/pub/distrib/ocaml-4.07/ocaml-4.07.1.tar.gz";
+    sha256 = "1x4sln131mcspisr22qc304590rvg720rbl7g2i4xiymgvhkpm1a";
   };
 
   metaocaml = fetchurl {
-    url = "http://okmij.org/ftp/ML/ber-metaocaml-104.tar.gz";
-    sha256 = "1gmwlxairxqcmqa2r6kbf8b4dxc7pfhfbh48g1s14d3z20rj8nib";
+    url = "http://okmij.org/ftp/ML/ber-metaocaml-107.tar.gz";
+    sha256 = "0xy6n0yj1f53pk612zfmn49pn04bd75qa40xgmr0w0lzx6dqsfmm";
   };
 
   # Needed to avoid a SIGBUS on the final executable on mips
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 0be9389489e2..505d2313852c 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -7318,7 +7318,7 @@ with pkgs;
 
   metaocaml_3_09 = callPackage ../development/compilers/ocaml/metaocaml-3.09.nix { };
 
-  ber_metaocaml = callPackage ../development/compilers/ocaml/ber-metaocaml-104.nix { };
+  ber_metaocaml = callPackage ../development/compilers/ocaml/ber-metaocaml.nix { };
 
   ocaml_make = callPackage ../development/ocaml-modules/ocamlmake { };
 

From 3e7e6485102efe2221cb1959f08e2ffbc855f720 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 11:39:57 -0800
Subject: [PATCH 0730/1129] syncthing: 0.14.51 -> 0.14.52

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/syncthing/versions
---
 pkgs/applications/networking/syncthing/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/syncthing/default.nix b/pkgs/applications/networking/syncthing/default.nix
index 86c8b6db2c47..8bd21b1a6a09 100644
--- a/pkgs/applications/networking/syncthing/default.nix
+++ b/pkgs/applications/networking/syncthing/default.nix
@@ -3,14 +3,14 @@
 let
   common = { stname, target, patches ? [], postInstall ? "" }:
     stdenv.mkDerivation rec {
-      version = "0.14.51";
+      version = "0.14.52";
       name = "${stname}-${version}";
 
       src = fetchFromGitHub {
         owner  = "syncthing";
         repo   = "syncthing";
         rev    = "v${version}";
-        sha256 = "1ycly3vh10s04pk0fk9hb0my7w5b16dfgmnk1mi0zjylcii3yzi5";
+        sha256 = "1qzzbqfyjqlgzysyf6dr0xsm3gn35irmllxjjd94v169swvkk5kd";
       };
 
       inherit patches;

From e4d0b69ae8e69a149b8cb1b08152bc0f1b404f24 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 8 Nov 2018 20:40:37 +0100
Subject: [PATCH 0731/1129] ltrace: add license

---
 pkgs/development/tools/misc/ltrace/default.nix | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/tools/misc/ltrace/default.nix b/pkgs/development/tools/misc/ltrace/default.nix
index 15eac37a53a9..27bbaf7b9c40 100644
--- a/pkgs/development/tools/misc/ltrace/default.nix
+++ b/pkgs/development/tools/misc/ltrace/default.nix
@@ -23,6 +23,7 @@ stdenv.mkDerivation rec {
   meta = with stdenv.lib; {
     description = "Library call tracer";
     homepage = https://www.ltrace.org/;
-    platforms = stdenv.lib.platforms.linux;
+    platforms = platforms.linux;
+    license = licenses.gpl2;
   };
 }

From d9afe678d5a0b936a703cfcfc1043404929408cc Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 8 Nov 2018 20:42:37 +0100
Subject: [PATCH 0732/1129] pkg-config: add license

---
 pkgs/development/tools/misc/pkgconfig/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/development/tools/misc/pkgconfig/default.nix b/pkgs/development/tools/misc/pkgconfig/default.nix
index 1ae8a32b6405..81fb7f8b13ff 100644
--- a/pkgs/development/tools/misc/pkgconfig/default.nix
+++ b/pkgs/development/tools/misc/pkgconfig/default.nix
@@ -39,6 +39,7 @@ stdenv.mkDerivation rec {
     description = "A tool that allows packages to find out information about other packages";
     homepage = http://pkg-config.freedesktop.org/wiki/;
     platforms = platforms.all;
+    license = licenses.gpl2Plus;
   };
 
 }

From 7a2e6cf6a0aebfb2e96f3e7d8439d1e9be8ea1ab Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 8 Nov 2018 20:45:51 +0100
Subject: [PATCH 0733/1129] sqitch-pg: add license

Inherit from AppSqitch
---
 pkgs/development/tools/misc/sqitch/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/development/tools/misc/sqitch/default.nix b/pkgs/development/tools/misc/sqitch/default.nix
index 8328433a823f..a077367622eb 100644
--- a/pkgs/development/tools/misc/sqitch/default.nix
+++ b/pkgs/development/tools/misc/sqitch/default.nix
@@ -23,5 +23,6 @@ stdenv.mkDerivation {
 
   meta = {
     platforms = stdenv.lib.platforms.unix;
+    inherit (sqitchModule.meta) license;
   };
 }

From 07be63132cbe5fd62e91c78f578cca7ac9ed6d83 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 11:46:35 -0800
Subject: [PATCH 0734/1129] theft: 0.4.3 -> 0.4.4

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/theft/versions
---
 pkgs/development/libraries/theft/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/theft/default.nix b/pkgs/development/libraries/theft/default.nix
index 2a1180533cea..881f9c033a38 100644
--- a/pkgs/development/libraries/theft/default.nix
+++ b/pkgs/development/libraries/theft/default.nix
@@ -1,14 +1,14 @@
 { stdenv, fetchFromGitHub }:
 
 stdenv.mkDerivation rec {
-  version = "0.4.3";
+  version = "0.4.4";
   name = "theft-${version}";
 
   src = fetchFromGitHub {
     owner = "silentbicycle";
     repo = "theft";
     rev = "v${version}";
-    sha256 = "1ibh8np12lafnrsrvjbbzlyq45zq654939x0y22vdnc6s8dpbhw4";
+    sha256 = "1csdhnb10k7vsyd44vjpg430nf6a909wj8af2zawdkbvnxn5wxc4";
   };
 
   preConfigure = "patchShebangs ./scripts/mk_bits_lut";

From 61020d5f233818f77d74fb73139398a1d4189882 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 8 Nov 2018 20:49:23 +0100
Subject: [PATCH 0735/1129] tie: add license

---
 pkgs/development/tools/misc/tie/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/development/tools/misc/tie/default.nix b/pkgs/development/tools/misc/tie/default.nix
index c73dbfce8f87..c380243a898b 100644
--- a/pkgs/development/tools/misc/tie/default.nix
+++ b/pkgs/development/tools/misc/tie/default.nix
@@ -23,5 +23,6 @@ stdenv.mkDerivation rec {
     description = "Allow multiple web change files";
     platforms = with platforms; unix;
     maintainers = with maintainers; [ vrthra ];
+    license = licenses.abstyles;
   };
 }

From 9eb92fc5d64c200044f0524744e7ba05538a0ecb Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 8 Nov 2018 20:51:34 +0100
Subject: [PATCH 0736/1129] parse-cli-bin: add license

---
 pkgs/development/tools/parse-cli-bin/default.nix | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/tools/parse-cli-bin/default.nix b/pkgs/development/tools/parse-cli-bin/default.nix
index 9424196cf466..616a2049c778 100644
--- a/pkgs/development/tools/parse-cli-bin/default.nix
+++ b/pkgs/development/tools/parse-cli-bin/default.nix
@@ -13,6 +13,7 @@ stdenv.mkDerivation rec {
     description = "Parse Command Line Interface";
     homepage    = "https://parse.com";
     platforms   = platforms.linux;
+    license     = licenses.bsd3;
   };
 
   phases = "installPhase";
@@ -22,4 +23,4 @@ stdenv.mkDerivation rec {
     cp "$src" "$out/bin/parse"
     chmod +x "$out/bin/parse"
   '';
-}
\ No newline at end of file
+}

From 3455f378c9ef7a630a345bf636ab649b694fc590 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 8 Nov 2018 20:54:07 +0100
Subject: [PATCH 0737/1129] peg: add license

---
 pkgs/development/tools/parsing/peg/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/tools/parsing/peg/default.nix b/pkgs/development/tools/parsing/peg/default.nix
index 3a273e1ddbfa..5b8b16ef1922 100644
--- a/pkgs/development/tools/parsing/peg/default.nix
+++ b/pkgs/development/tools/parsing/peg/default.nix
@@ -10,9 +10,9 @@ stdenv.mkDerivation rec {
 
   preBuild="makeFlagsArray+=( PREFIX=$out )";
 
-  meta = {
+  meta = with stdenv.lib; {
     homepage = http://piumarta.com/software/peg/;
-    platforms = stdenv.lib.platforms.all;
-    maintainers = [ ];
+    platforms = platforms.all;
+    license = licenses.mit;
   };
 }

From e707443caa7ab1d6535416d6e2a0aa359d57030d Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 8 Nov 2018 20:56:45 +0100
Subject: [PATCH 0738/1129] tradcpp: add license

---
 pkgs/development/tools/tradcpp/default.nix | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/tools/tradcpp/default.nix b/pkgs/development/tools/tradcpp/default.nix
index 8cde662b14c3..64a97ad00873 100644
--- a/pkgs/development/tools/tradcpp/default.nix
+++ b/pkgs/development/tools/tradcpp/default.nix
@@ -13,9 +13,10 @@ stdenv.mkDerivation {
   preConfigure = "autoconf";
   patches = [ ./tradcpp-configure.patch ];
 
-  meta = {
+  meta = with stdenv.lib; {
     description = "A traditional (K&R-style) C macro preprocessor";
-    platforms = stdenv.lib.platforms.all;
+    platforms = platforms.all;
+    license = licenses.bsd2;
   };
 
 }

From 361f3cb2fa13a1328d9470a612417a48fffe7bf5 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 8 Nov 2018 21:00:50 +0100
Subject: [PATCH 0739/1129] xcbuild: add license

---
 pkgs/development/tools/xcbuild/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/development/tools/xcbuild/default.nix b/pkgs/development/tools/xcbuild/default.nix
index 3f7b21be005d..e71375402c70 100644
--- a/pkgs/development/tools/xcbuild/default.nix
+++ b/pkgs/development/tools/xcbuild/default.nix
@@ -62,5 +62,6 @@ in stdenv.mkDerivation rec {
     homepage = https://github.com/facebook/xcbuild;
     platforms = platforms.unix;
     maintainers = with maintainers; [ copumpkin matthewbauer ];
+    license = with licenses; [ bsd2 bsd3 ];
   };
 }

From 1749c8ff1c0c113af8b3b169f17f720aad43bb18 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 12:02:55 -0800
Subject: [PATCH 0740/1129] swaks: 20170101.0 -> 20181104.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/swaks/versions
---
 pkgs/tools/networking/swaks/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/networking/swaks/default.nix b/pkgs/tools/networking/swaks/default.nix
index be807e307715..8daf034d4bdd 100644
--- a/pkgs/tools/networking/swaks/default.nix
+++ b/pkgs/tools/networking/swaks/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "swaks-${version}";
-  version = "20170101.0";
+  version = "20181104.0";
 
   src = fetchurl {
     url = "https://www.jetmore.org/john/code/swaks/files/${name}.tar.gz";
-    sha256 = "0pli4mlhasnqqxmmxalwyg3x7n2vhcbgsnp2xgddamjavv82vrl4";
+    sha256 = "0n1yd27xcyb1ylp5gln3yv5gzi9r377hjy1j32367kgb3247ygq2";
   };
 
   buildInputs = [ perl makeWrapper ];

From 20938b42640665e34883e9b2ea023ba52138d4e4 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 12:11:50 -0800
Subject: [PATCH 0741/1129] snapraid: 11.2 -> 11.3

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/snapraid/versions
---
 pkgs/tools/filesystems/snapraid/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/filesystems/snapraid/default.nix b/pkgs/tools/filesystems/snapraid/default.nix
index 279d6adf9a22..725ff3e56dcd 100644
--- a/pkgs/tools/filesystems/snapraid/default.nix
+++ b/pkgs/tools/filesystems/snapraid/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "snapraid-${version}";
-  version = "11.2";
+  version = "11.3";
 
   src = fetchFromGitHub {
     owner = "amadvance";
     repo = "snapraid";
     rev = "v${version}";
-    sha256 = "01z8fl3x2j5bnm0rybj7hhch18is6dkwqc43yzwc6418spr4imsd";
+    sha256 = "08rwz55njkr1w794y3hs8nxc11vzbv4drds9wgxpf6ps8qf9q49f";
   };
 
   VERSION = version;

From 1bb7496d2eb91f01967757a50f4c645f4427d837 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 12:14:48 -0800
Subject: [PATCH 0742/1129] tio: 1.31 -> 1.32

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/tio/versions
---
 pkgs/tools/misc/tio/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/misc/tio/default.nix b/pkgs/tools/misc/tio/default.nix
index 6e17ce26e0de..ed26895fba6f 100644
--- a/pkgs/tools/misc/tio/default.nix
+++ b/pkgs/tools/misc/tio/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "tio-${version}";
-  version = "1.31";
+  version = "1.32";
 
   src = fetchzip {
     url = "https://github.com/tio/tio/archive/v${version}.tar.gz";
-    sha256 = "1164ida1vxvm0z76nmkk2d5y9i3wj8rni9sl1mid6c09gi4k2slk";
+    sha256 = "0lwqdm73kshi9qs8pks1b4by6yb9jf3bbyw3bv52xmggnr5s1hcv";
   };
 
   nativeBuildInputs = [ autoreconfHook ];

From 07748ae5c813670135f1e9912f2719c71ce646c0 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 12:20:39 -0800
Subject: [PATCH 0743/1129] tzupdate: 1.2.0 -> 1.3.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/tzupdate/versions
---
 pkgs/applications/misc/tzupdate/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/tzupdate/default.nix b/pkgs/applications/misc/tzupdate/default.nix
index 3a723907c925..a5d2f206f3a5 100644
--- a/pkgs/applications/misc/tzupdate/default.nix
+++ b/pkgs/applications/misc/tzupdate/default.nix
@@ -5,11 +5,11 @@ let
 in
 buildPythonApplication rec {
   pname = "tzupdate";
-  version = "1.2.0";
+  version = "1.3.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1wj2r1wirnn5kllaasdldimvp3cc3w7w890iqrjksz5wwjbnj8pk";
+    sha256 = "085kp4v9ijhkfvr0r5rzn4z7nrkb2qig05j0bajb0gkgynwf8wnz";
   };
 
   propagatedBuildInputs = [ requests ];

From 93a90a34162486cfa04277a235c2640cb65811dd Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 12:38:39 -0800
Subject: [PATCH 0744/1129] unshield: 1.4.2 -> 1.4.3

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/unshield/versions
---
 pkgs/tools/archivers/unshield/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/archivers/unshield/default.nix b/pkgs/tools/archivers/unshield/default.nix
index 0edb302b49c3..3febb557bf8b 100644
--- a/pkgs/tools/archivers/unshield/default.nix
+++ b/pkgs/tools/archivers/unshield/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "unshield-${version}";
-  version = "1.4.2";
+  version = "1.4.3";
 
   src = fetchFromGitHub {
     owner = "twogood";
     repo = "unshield";
     rev = version;
-    sha256 = "07lmh8vmrbqy4kd6zl5yc1ar3bg33w5cymlzwfijy6arg77hjgq9";
+    sha256 = "19wn22vszhci8dfcixx5rliz7phx3lv5ablvhjlclvj75k2vsdqd";
   };
 
 

From cce331643da64735054cabccac65d7af3ed35fb3 Mon Sep 17 00:00:00 2001
From: Katharina Fey <kookie@spacekookie.de>
Date: Thu, 8 Nov 2018 21:39:20 +0100
Subject: [PATCH 0745/1129] maintainers: add spacekookie

---
 maintainers/maintainer-list.nix | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index 1b04b43413c3..14f75e32052c 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -4003,6 +4003,11 @@
     github = "spacefrogg";
     name = "Michael Raitza";
   };
+  spacekookie = {
+    email = "kookie@spacekookie.de";
+    github = "spacekookie";
+    name = "Katharina Fey";
+  };
   spencerjanssen = {
     email = "spencerjanssen@gmail.com";
     github = "spencerjanssen";

From a6d0b9c5b5137bb1863fab121aeebc1485a5f6c7 Mon Sep 17 00:00:00 2001
From: Katharina Fey <kookie@spacekookie.de>
Date: Thu, 8 Nov 2018 21:40:00 +0100
Subject: [PATCH 0746/1129] ly: init at 0.2.1

---
 .../display-managers/ly/default.nix           | 29 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 31 insertions(+)
 create mode 100644 pkgs/applications/display-managers/ly/default.nix

diff --git a/pkgs/applications/display-managers/ly/default.nix b/pkgs/applications/display-managers/ly/default.nix
new file mode 100644
index 000000000000..e8edcc3f634c
--- /dev/null
+++ b/pkgs/applications/display-managers/ly/default.nix
@@ -0,0 +1,29 @@
+{ stdenv, lib, fetchFromGitHub, linux-pam }:
+
+stdenv.mkDerivation rec { 
+  name = "ly-${version}";
+  version = "0.2.1";
+
+  src = fetchFromGitHub {
+    owner = "cylgom";
+    repo = "ly";
+    rev = version;
+    sha256 = "16gjcrd4a6i4x8q8iwlgdildm7cpdsja8z22pf2izdm6rwfki97d";
+    fetchSubmodules = true;
+  }; 
+
+  buildInputs = [ linux-pam ];
+  makeFlags = [ "FLAGS=-Wno-error" ];
+
+  installPhase = ''
+    mkdir -p $out/bin
+    cp bin/ly $out/bin 
+  '';
+
+  meta = with lib; {
+    description = "TUI display manager";
+    license = licenses.wtfpl;
+    homepage = https://github.com/cylgom/ly;
+    maintainers = [ maintainers.spacekookie ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 505d2313852c..132bc579262d 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -19014,6 +19014,8 @@ with pkgs;
 
   lightdm-mini-greeter = callPackage ../applications/display-managers/lightdm-mini-greeter { };
 
+  ly = callPackage ../applications/display-managers/ly { }; 
+
   slic3r = callPackage ../applications/misc/slic3r { };
 
   slic3r-prusa3d = callPackage ../applications/misc/slic3r/prusa3d.nix { };

From 6421d002d1790424f8a082673c7213c3edafc574 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 12:41:42 -0800
Subject: [PATCH 0747/1129] smcroute: 2.4.2 -> 2.4.3

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/smcroute/versions
---
 pkgs/servers/smcroute/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/smcroute/default.nix b/pkgs/servers/smcroute/default.nix
index 75fff3715edc..8111991cd38a 100644
--- a/pkgs/servers/smcroute/default.nix
+++ b/pkgs/servers/smcroute/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "smcroute-${version}";
-  version = "2.4.2";
+  version = "2.4.3";
 
   src = fetchFromGitHub {
     owner = "troglobit";
     repo = "smcroute";
     rev = version;
-    sha256 = "197bi3il0c1vldw35ijx3zqyfj738nvfvr7yr4cwrbv40p3ascaq";
+    sha256 = "1bdz3dic12lwl3rfczd9bxpgjbpw2g7yap2zddz6dvgkqvyjjf1h";
   };
 
   nativeBuildInputs = [ autoreconfHook pkgconfig ];

From 3dcb8c10f5b5e58e6e409b57a4182807f3f3ef37 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Thu, 8 Nov 2018 14:42:29 -0600
Subject: [PATCH 0748/1129] shogun: remove liblapack

not needed anymore
---
 pkgs/applications/science/machine-learning/shogun/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/science/machine-learning/shogun/default.nix b/pkgs/applications/science/machine-learning/shogun/default.nix
index 402ef0d95882..8de78092bd84 100644
--- a/pkgs/applications/science/machine-learning/shogun/default.nix
+++ b/pkgs/applications/science/machine-learning/shogun/default.nix
@@ -4,7 +4,7 @@
 # maths
 , openblasCompat, eigen, nlopt, lp_solve, colpack
 # libraries
-, libarchive, liblapack, libxml2
+, libarchive, libxml2
 # extra support
 , pythonSupport ? true, pythonPackages ? null
 , opencvSupport ? false, opencv ? null
@@ -42,7 +42,7 @@ stdenv.mkDerivation rec {
 
   buildInputs = with lib; [
       openblasCompat bzip2 ccache cmake colpack curl ctags eigen hdf5 json_c lp_solve lzma lzo
-      protobuf nlopt snappy swig (libarchive.dev) liblapack libxml2
+      protobuf nlopt snappy swig (libarchive.dev) libxml2
     ]
     ++ optionals (pythonSupport) (with pythonPackages; [ python ply numpy ])
     ++ optional  (opencvSupport) opencv;

From 457e3d57ddee645d85dff360edbea77cab09a3fa Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 12:52:39 -0800
Subject: [PATCH 0749/1129] rapid-photo-downloader: 0.9.12 -> 0.9.13

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/rapid-photo-downloader/versions
---
 pkgs/applications/graphics/rapid-photo-downloader/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/graphics/rapid-photo-downloader/default.nix b/pkgs/applications/graphics/rapid-photo-downloader/default.nix
index d4edbae1d28e..59d6fec45dae 100644
--- a/pkgs/applications/graphics/rapid-photo-downloader/default.nix
+++ b/pkgs/applications/graphics/rapid-photo-downloader/default.nix
@@ -6,11 +6,11 @@
 
 python3Packages.buildPythonApplication rec {
   pname = "rapid-photo-downloader";
-  version = "0.9.12";
+  version = "0.9.13";
 
   src = fetchurl {
     url = "https://launchpad.net/rapid/pyqt/${version}/+download/${pname}-${version}.tar.gz";
-    sha256 = "0nzahps7hs120xv2r55k293kialf83nx44x3jg85yh349rpqrii8";
+    sha256 = "1517w18sxil1gwd78jjbbixcd1b0sp05imnnd5h5lr8wl3f0szj0";
   };
 
   # Disable version check and fix install tests

From f6e85785522eae598c3d7db97380703e5922a7e1 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Thu, 8 Nov 2018 21:26:29 +0100
Subject: [PATCH 0750/1129] ltrace: remove aarch64 from platforms

ltrace does not support ARM
---
 pkgs/development/tools/misc/ltrace/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/tools/misc/ltrace/default.nix b/pkgs/development/tools/misc/ltrace/default.nix
index 27bbaf7b9c40..77d4c5771f90 100644
--- a/pkgs/development/tools/misc/ltrace/default.nix
+++ b/pkgs/development/tools/misc/ltrace/default.nix
@@ -23,7 +23,7 @@ stdenv.mkDerivation rec {
   meta = with stdenv.lib; {
     description = "Library call tracer";
     homepage = https://www.ltrace.org/;
-    platforms = platforms.linux;
+    platforms = [ "i686-linux" "x86_64-linux" ];
     license = licenses.gpl2;
   };
 }

From 3631c341d0d0f07880a3afc28864ef28b26f445a Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 12:56:23 -0800
Subject: [PATCH 0751/1129] redis: 5.0.0 -> 5.0.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/redis/versions
---
 pkgs/servers/nosql/redis/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/nosql/redis/default.nix b/pkgs/servers/nosql/redis/default.nix
index afa0c6c0f938..a7370847be15 100644
--- a/pkgs/servers/nosql/redis/default.nix
+++ b/pkgs/servers/nosql/redis/default.nix
@@ -1,12 +1,12 @@
 { stdenv, fetchurl, lua }:
 
 stdenv.mkDerivation rec {
-  version = "5.0.0";
+  version = "5.0.1";
   name = "redis-${version}";
 
   src = fetchurl {
     url = "http://download.redis.io/releases/${name}.tar.gz";
-    sha256 = "194rvj3wzdil2rny93vq9g9vlqnb7gv4vnwaklybgcj00qnqpjbh";
+    sha256 = "1jxbjmsxn0lgh0y3k5j57rxf2sdjj71hxhw4jcvsvycpxh77r9l2";
   };
 
   buildInputs = [ lua ];

From 1ac07c82e18d63d9cbb246b88807cab47f37a0d3 Mon Sep 17 00:00:00 2001
From: Sander van der Burg <svanderburg@gmail.com>
Date: Thu, 8 Nov 2018 22:31:42 +0100
Subject: [PATCH 0752/1129] alerta: init at 6.3.2

---
 .../python-modules/alerta-server/default.nix  | 27 +++++++++++++++++++
 .../python-modules/alerta/default.nix         | 27 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  4 +++
 3 files changed, 58 insertions(+)
 create mode 100644 pkgs/development/python-modules/alerta-server/default.nix
 create mode 100644 pkgs/development/python-modules/alerta/default.nix

diff --git a/pkgs/development/python-modules/alerta-server/default.nix b/pkgs/development/python-modules/alerta-server/default.nix
new file mode 100644
index 000000000000..a16d54af2606
--- /dev/null
+++ b/pkgs/development/python-modules/alerta-server/default.nix
@@ -0,0 +1,27 @@
+{ stdenv, buildPythonPackage, fetchPypi, makeWrapper
+, python-dateutil, requests, pymongo, raven, bcrypt, flask, pyjwt, flask-cors, psycopg2, pytz, flask-compress, jinja2
+}:
+
+buildPythonPackage rec {
+  pname = "alerta-server";
+  version = "6.3.2";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0mp97scdz2scdzi9va99hghmjz25zssgwg07i6cldzkc8j71kax5";
+  };
+
+  buildInputs = [ python-dateutil requests pymongo raven bcrypt flask pyjwt flask-cors psycopg2 pytz flask-compress jinja2 ];
+
+  doCheck = false; # We can't run the tests from Nix, because they rely on the presence of a working MongoDB server
+
+  postInstall = ''
+    wrapProgram $out/bin/alertad --prefix PYTHONPATH : "$PYTHONPATH"
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = https://alerta.io;
+    description = "Alerta Monitoring System server";
+    license = licenses.asl20;
+  };
+}
diff --git a/pkgs/development/python-modules/alerta/default.nix b/pkgs/development/python-modules/alerta/default.nix
new file mode 100644
index 000000000000..47125894e5b9
--- /dev/null
+++ b/pkgs/development/python-modules/alerta/default.nix
@@ -0,0 +1,27 @@
+{ stdenv, buildPythonPackage, fetchPypi, makeWrapper
+, six, click, requests, pytz, tabulate
+}:
+
+buildPythonPackage rec {
+  pname = "alerta";
+  version = "6.3.1";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "08l366g0arpd23bm7bzk0hpmfd3z6brb8p24rjwkb3gvafhk7cz9";
+  };
+
+  buildInputs = [ six click requests pytz tabulate ];
+
+  doCheck = false;
+
+  postInstall = ''
+    wrapProgram $out/bin/alerta --prefix PYTHONPATH : "$PYTHONPATH"
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = https://alerta.io;
+    description = "Alerta Monitoring System command-line interface";
+    license = licenses.asl20;
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 2ce0751069c6..4d065d48f2b9 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -166,6 +166,10 @@ in {
 
   agate-dbf = callPackage ../development/python-modules/agate-dbf { };
 
+  alerta = callPackage ../development/python-modules/alerta { };
+
+  alerta-server = callPackage ../development/python-modules/alerta-server { };
+
   phonenumbers = callPackage ../development/python-modules/phonenumbers { };
 
   agate-excel = callPackage ../development/python-modules/agate-excel { };

From 530b4bcadd3228a82588911e248f7cffec74c0cc Mon Sep 17 00:00:00 2001
From: Sander van der Burg <svanderburg@gmail.com>
Date: Thu, 8 Nov 2018 22:34:23 +0100
Subject: [PATCH 0753/1129] nixos/alerta: create new module + add kapacitor
 integration

---
 nixos/modules/misc/ids.nix                    |   2 +
 nixos/modules/module-list.nix                 |   1 +
 nixos/modules/services/monitoring/alerta.nix  | 116 ++++++++++++++++++
 .../modules/services/monitoring/kapacitor.nix |  38 ++++++
 4 files changed, 157 insertions(+)
 create mode 100644 nixos/modules/services/monitoring/alerta.nix

diff --git a/nixos/modules/misc/ids.nix b/nixos/modules/misc/ids.nix
index 6e7f0a007bc2..446a311807cc 100644
--- a/nixos/modules/misc/ids.nix
+++ b/nixos/modules/misc/ids.nix
@@ -334,6 +334,7 @@
       slurm = 307;
       kapacitor = 308;
       solr = 309;
+      alerta = 310;
 
       # When adding a uid, make sure it doesn't match an existing gid. And don't use uids above 399!
 
@@ -628,6 +629,7 @@
       slurm = 307;
       kapacitor = 308;
       solr = 309;
+      alerta = 310;
 
       # When adding a gid, make sure it doesn't match an existing
       # uid. Users and groups with the same name should have equal
diff --git a/nixos/modules/module-list.nix b/nixos/modules/module-list.nix
index 37e90232da2a..707756f47cd9 100644
--- a/nixos/modules/module-list.nix
+++ b/nixos/modules/module-list.nix
@@ -419,6 +419,7 @@
   ./services/misc/weechat.nix
   ./services/misc/xmr-stak.nix
   ./services/misc/zookeeper.nix
+  ./services/monitoring/alerta.nix
   ./services/monitoring/apcupsd.nix
   ./services/monitoring/arbtt.nix
   ./services/monitoring/bosun.nix
diff --git a/nixos/modules/services/monitoring/alerta.nix b/nixos/modules/services/monitoring/alerta.nix
new file mode 100644
index 000000000000..8f4258e26ded
--- /dev/null
+++ b/nixos/modules/services/monitoring/alerta.nix
@@ -0,0 +1,116 @@
+{ options, config, lib, pkgs, ... }:
+
+with lib;
+
+let
+  cfg = config.services.alerta;
+
+  alertaConf = pkgs.writeTextFile {
+    name = "alertad.conf";
+    text = ''
+      DATABASE_URL = '${cfg.databaseUrl}'
+      DATABASE_NAME = '${cfg.databaseName}'
+      LOG_FILE = '${cfg.logDir}/alertad.log'
+      LOG_FORMAT = '%(asctime)s - %(name)s - %(levelname)s - %(message)s'
+      CORS_ORIGINS = [ ${concatMapStringsSep ", " (s: "\"" + s + "\"") cfg.corsOrigins} ];
+      AUTH_REQUIRED = ${if cfg.authenticationRequired then "True" else "False"}
+      SIGNUP_ENABLED = ${if cfg.signupEnabled then "True" else "False"}
+      ${cfg.extraConfig}
+    '';
+  };
+in
+{
+  options.services.alerta = {
+    enable = mkEnableOption "alerta";
+
+    port = mkOption {
+      type = types.int;
+      default = 5000;
+      description = "Port of Alerta";
+    };
+
+    bind = mkOption {
+      type = types.str;
+      default = "0.0.0.0";
+      example = literalExample "0.0.0.0";
+      description = "Address to bind to. The default is to bind to all addresses";
+    };
+
+    logDir = mkOption {
+      type = types.path;
+      description = "Location where the logfiles are stored";
+      default = "/var/log/alerta";
+    };
+
+    databaseUrl = mkOption {
+      type = types.str;
+      description = "URL of the MongoDB or PostgreSQL database to connect to";
+      default = "mongodb://localhost";
+      example = "mongodb://localhost";
+    };
+
+    databaseName = mkOption {
+      type = types.str;
+      description = "Name of the database instance to connect to";
+      default = "monitoring";
+      example = "monitoring";
+    };
+
+    corsOrigins = mkOption {
+      type = types.listOf types.str;
+      description = "List of URLs that can access the API for Cross-Origin Resource Sharing (CORS)";
+      example = [ "http://localhost" "http://localhost:5000" ];
+      default = [ "http://localhost" "http://localhost:5000" ];
+    };
+
+    authenticationRequired = mkOption {
+      type = types.bool;
+      description = "Whether users must authenticate when using the web UI or command-line tool";
+      default = false;
+    };
+
+    signupEnabled = mkOption {
+      type = types.bool;
+      description = "Whether to prevent sign-up of new users via the web UI";
+      default = true;
+    };
+
+    extraConfig = mkOption {
+      description = "These lines go into alertad.conf verbatim.";
+      default = "";
+      type = types.lines;
+    };
+  };
+
+  config = mkIf cfg.enable {
+    systemd.services.alerta = {
+      description = "Alerta Monitoring System";
+      wantedBy = [ "multi-user.target" ];
+      after = [ "networking.target" ];
+      environment = {
+        ALERTA_SVR_CONF_FILE = alertaConf;
+      };
+      serviceConfig = {
+        ExecStart = "${pkgs.python36Packages.alerta-server}/bin/alertad run --port ${toString cfg.port} --host ${cfg.bind}";
+        User = "alerta";
+        Group = "alerta";
+        PermissionsStartOnly = true;
+      };
+      preStart = ''
+        mkdir -p ${cfg.logDir}
+        chown alerta:alerta ${cfg.logDir}
+      '';
+    };
+
+    environment.systemPackages = [ pkgs.python36Packages.alerta ];
+
+    users.users.alerta = {
+      uid = config.ids.uids.alerta;
+      description = "Alerta user";
+    };
+
+    users.groups.alerta = {
+      gid = config.ids.gids.alerta;
+    };
+  };
+}
diff --git a/nixos/modules/services/monitoring/kapacitor.nix b/nixos/modules/services/monitoring/kapacitor.nix
index 1de0a8d5af2f..a4bdfa8f8053 100644
--- a/nixos/modules/services/monitoring/kapacitor.nix
+++ b/nixos/modules/services/monitoring/kapacitor.nix
@@ -42,6 +42,15 @@ let
           password = "${cfg.defaultDatabase.password}"
       ''}
 
+      ${optionalString (cfg.alerta.enable) ''
+        [alerta]
+          enabled = true
+          url = "${cfg.alerta.url}"
+          token = "${cfg.alerta.token}"
+          environment = "${cfg.alerta.environment}"
+          origin = "${cfg.alerta.origin}"
+      ''}
+
       ${cfg.extraConfig}
     '';
   };
@@ -120,6 +129,35 @@ in
         type = types.string;
       };
     };
+
+    alerta = {
+      enable = mkEnableOption "kapacitor alerta integration";
+
+      url = mkOption {
+        description = "The URL to the Alerta REST API";
+        default = "http://localhost:5000";
+        example = "http://localhost:5000";
+        type = types.string;
+      };
+
+      token = mkOption {
+        description = "Default Alerta authentication token";
+        type = types.str;
+        default = "";
+      };
+
+      environment = mkOption {
+        description = "Default Alerta environment";
+        type = types.str;
+        default = "Production";
+      };
+
+      origin = mkOption {
+        description = "Default origin of alert";
+        type = types.str;
+        default = "kapacitor";
+      };
+    };
   };
 
   config = mkIf cfg.enable {

From 4cd4f7a2c52231856e64ea1c19b2478b57c4c0c6 Mon Sep 17 00:00:00 2001
From: Renaud <c0bw3b@users.noreply.github.com>
Date: Thu, 8 Nov 2018 22:59:17 +0100
Subject: [PATCH 0754/1129] qbs: 1.8 -> 1.12.1

(#49869)
---
 .../tools/build-managers/qbs/default.nix      | 36 +++++++------------
 pkgs/top-level/all-packages.nix               |  2 +-
 2 files changed, 13 insertions(+), 25 deletions(-)

diff --git a/pkgs/development/tools/build-managers/qbs/default.nix b/pkgs/development/tools/build-managers/qbs/default.nix
index dc2d545a7654..99fb9090c0d5 100644
--- a/pkgs/development/tools/build-managers/qbs/default.nix
+++ b/pkgs/development/tools/build-managers/qbs/default.nix
@@ -1,41 +1,29 @@
-{ stdenv, qt5, fetchFromGitHub }:
+{ stdenv, fetchFromGitHub, qmake, qtbase, qtscript }:
 
 stdenv.mkDerivation rec {
   name = "qbs-${version}";
 
-  version = "1.8";
+  version = "1.12.1";
 
   src = fetchFromGitHub {
-    owner = "qt-labs";
+    owner = "qbs";
     repo = "qbs";
-    rev = "fa9c21d6908e0dad805113f570ac883c1dc5067a";
-    sha256 = "1manriz75rav1vldkk829yk1la9md4m872l5ykl9m982i9801d9g";
+    rev = "v${version}";
+    sha256 = "14b7bz07yfrmbry57n3xh8w4nbapm6aknk45fgi7ljvsfzp85fzl";
   };
 
+  nativeBuildInputs = [ qmake ];
+
+  qmakeFlags = [ "QBS_INSTALL_PREFIX=$(out)" "qbs.pro" ];
+
+  buildInputs = [ qtbase qtscript ];
+
   enableParallelBuilding = true;
 
-  buildInputs = with qt5; [
-    qtbase
-    qtscript
-  ];
-
-  installFlags = [ "INSTALL_ROOT=$(out)" ];
-
-  buildPhase = ''
-    # From http://doc.qt.io/qbs/building.html
-    qmake -r qbs.pro
-    make
-  '';
-
-  postInstall = ''
-    mv $out/usr/local/* "$out"
-  '';
-
   meta = with stdenv.lib; {
     description = "A tool that helps simplify the build process for developing projects across multiple platforms";
-    license = licenses.lgpl21;
+    license = licenses.lgpl3;
     maintainers = with maintainers; [ expipiplus1 ];
-    inherit version;
     platforms = platforms.linux;
   };
 }
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 505d2313852c..76414156f4d4 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -11849,7 +11849,7 @@ with pkgs;
 
   re2 = callPackage ../development/libraries/re2 { };
 
-  qbs = callPackage ../development/tools/build-managers/qbs { };
+  qbs = libsForQt5.callPackage ../development/tools/build-managers/qbs { };
 
   qca2 = callPackage ../development/libraries/qca2 { qt = qt4; };
   qca2-qt5 = qca2.override { qt = qt5.qtbase; };

From dc29fb505731a2a5227dbcb1ff6cfcb2ca72afdc Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 14:04:45 -0800
Subject: [PATCH 0755/1129] sigrok-cli: 0.7.0 -> 0.7.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/sigrok-cli/versions
---
 pkgs/development/tools/sigrok-cli/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/tools/sigrok-cli/default.nix b/pkgs/development/tools/sigrok-cli/default.nix
index 3d8027a12994..dd0fa2461d89 100644
--- a/pkgs/development/tools/sigrok-cli/default.nix
+++ b/pkgs/development/tools/sigrok-cli/default.nix
@@ -1,11 +1,11 @@
 { stdenv, fetchurl, pkgconfig, glib, libsigrok, libsigrokdecode }:
 
 stdenv.mkDerivation rec {
-  name = "sigrok-cli-0.7.0";
+  name = "sigrok-cli-0.7.1";
 
   src = fetchurl {
     url = "https://sigrok.org/download/source/sigrok-cli/${name}.tar.gz";
-    sha256 = "072ylscp0ppgii1k5j07hhv7dfmni4vyhxnsvxmgqgfyq9ldjsan";
+    sha256 = "15vpn1psriadcbl6v9swwgws7dva85ld03yv6g1mgm27kx11697m";
   };
 
   nativeBuildInputs = [ pkgconfig ];

From 3a7d9f84f8f15eb69c79808294acafe889b53d1c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Andr=C3=A9=20Stylianos=20Ramos?= <andre.stylianos@gmail.com>
Date: Thu, 8 Nov 2018 20:19:06 -0200
Subject: [PATCH 0756/1129] joker: 0.9.7 -> 0.10.1

---
 pkgs/development/interpreters/joker/default.nix | 4 ++--
 pkgs/development/interpreters/joker/deps.nix    | 9 +++++++++
 2 files changed, 11 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/interpreters/joker/default.nix b/pkgs/development/interpreters/joker/default.nix
index 1342d6c34d2e..21a7cfba4064 100644
--- a/pkgs/development/interpreters/joker/default.nix
+++ b/pkgs/development/interpreters/joker/default.nix
@@ -2,7 +2,7 @@
 
 buildGoPackage rec {
   name = "joker-${version}";
-  version = "0.9.7";
+  version = "0.10.1";
 
   goPackagePath = "github.com/candid82/joker";
 
@@ -10,7 +10,7 @@ buildGoPackage rec {
     rev = "v${version}";
     owner = "candid82";
     repo = "joker";
-    sha256 = "0fl04xdpqmr5xpd4pvj72gdy3v1fr9z6h3ja7dmkama8fw2x4diz";
+    sha256 = "1c3p61jmlljljbiwsylmfa75pi00y7yj5wabx1rxmpswc41g5mab";
   };
 
   preBuild = "go generate ./...";
diff --git a/pkgs/development/interpreters/joker/deps.nix b/pkgs/development/interpreters/joker/deps.nix
index ee99aeab69f8..4eff988796b3 100644
--- a/pkgs/development/interpreters/joker/deps.nix
+++ b/pkgs/development/interpreters/joker/deps.nix
@@ -8,6 +8,15 @@
       sha256 = "1ny3rws671sa9bj5phg6k1rprlgzys73kfdr14vxq4wnwz84zbrc";
     };
   }
+  {
+    goPackagePath = "github.com/pkg/profile";
+    fetch = {
+      type = "git";
+      url = "https://github.com/pkg/profile";
+      rev = "5b67d428864e92711fcbd2f8629456121a56d91f";
+      sha256 = "0blqmvgqvdbqmh3fp9pfdxc9w1qfshrr0zy9whj0sn372bw64qnr";
+    };
+  }
   {
     goPackagePath = "gopkg.in/yaml.v2";
     fetch = {

From 3866470845aa2121ee5ff926221aab5f07d47317 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 14:28:56 -0800
Subject: [PATCH 0757/1129] rsyslog: 8.38.0 -> 8.39.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/rsyslog/versions
---
 pkgs/tools/system/rsyslog/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/system/rsyslog/default.nix b/pkgs/tools/system/rsyslog/default.nix
index fa2d40949e53..91923e7e59b5 100644
--- a/pkgs/tools/system/rsyslog/default.nix
+++ b/pkgs/tools/system/rsyslog/default.nix
@@ -11,11 +11,11 @@ let
   mkFlag = cond: name: if cond then "--enable-${name}" else "--disable-${name}";
 in
 stdenv.mkDerivation rec {
-  name = "rsyslog-8.38.0";
+  name = "rsyslog-8.39.0";
 
   src = fetchurl {
     url = "https://www.rsyslog.com/files/download/rsyslog/${name}.tar.gz";
-    sha256 = "0b52pcamj2g27zdg0szzk03kigm9lanj0v0w80alwy5fpk9qwcjd";
+    sha256 = "1d3ac448b8gj58vg7n99ffv2rvpnhhin1ni5vyby73aksvz9c7y7";
   };
 
   #patches = [ ./fix-gnutls-detection.patch ];

From 0bbb6f4f2a42c361b2e01a741a2ffdd0ce61e363 Mon Sep 17 00:00:00 2001
From: Aaron Andersen <aaron@fosslib.net>
Date: Mon, 5 Nov 2018 20:57:24 -0500
Subject: [PATCH 0758/1129] nixos/gitea: fix systemd after target when mysql is
 the database of choice

---
 nixos/modules/services/misc/gitea.nix | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/nixos/modules/services/misc/gitea.nix b/nixos/modules/services/misc/gitea.nix
index a222325579fe..16a4a806202e 100644
--- a/nixos/modules/services/misc/gitea.nix
+++ b/nixos/modules/services/misc/gitea.nix
@@ -6,6 +6,7 @@ let
   cfg = config.services.gitea;
   gitea = cfg.package;
   pg = config.services.postgresql;
+  useMysql = cfg.database.type == "mysql";
   usePostgresql = cfg.database.type == "postgres";
   configFile = pkgs.writeText "app.ini" ''
     APP_NAME = ${cfg.appName}
@@ -253,7 +254,7 @@ in
 
     systemd.services.gitea = {
       description = "gitea";
-      after = [ "network.target" "postgresql.service" ];
+      after = [ "network.target" ] ++ lib.optional usePostgresql "postgresql.service" ++ lib.optional useMysql "mysql.service";
       wantedBy = [ "multi-user.target" ];
       path = [ gitea.bin ];
 

From 3ed52c78047bcc4b74d34e0cee179bb708aebdc0 Mon Sep 17 00:00:00 2001
From: Aaron Andersen <aaron@fosslib.net>
Date: Mon, 5 Nov 2018 21:05:42 -0500
Subject: [PATCH 0759/1129] nixos/gitea: add mysql socket authentication as an
 option

---
 nixos/modules/services/misc/gitea.nix | 9 ++++++++-
 1 file changed, 8 insertions(+), 1 deletion(-)

diff --git a/nixos/modules/services/misc/gitea.nix b/nixos/modules/services/misc/gitea.nix
index 16a4a806202e..7a10bd872994 100644
--- a/nixos/modules/services/misc/gitea.nix
+++ b/nixos/modules/services/misc/gitea.nix
@@ -15,7 +15,7 @@ let
 
     [database]
     DB_TYPE = ${cfg.database.type}
-    HOST = ${cfg.database.host}:${toString cfg.database.port}
+    HOST = ${if cfg.database.socket != null then cfg.database.socket else cfg.database.host + ":" + toString cfg.database.port}
     NAME = ${cfg.database.name}
     USER = ${cfg.database.user}
     PASSWD = #dbpass#
@@ -149,6 +149,13 @@ in
           '';
         };
 
+        socket = mkOption {
+          type = types.nullOr types.path;
+          default = null;
+          example = "/run/mysqld/mysqld.sock";
+          description = "Path to the unix socket file to use for authentication.";
+        };
+
         path = mkOption {
           type = types.str;
           default = "${cfg.stateDir}/data/gitea.db";

From 0dde47a58acdd3cff855796bbd899c90c7fb25b5 Mon Sep 17 00:00:00 2001
From: Aaron Andersen <aaron@fosslib.net>
Date: Mon, 5 Nov 2018 21:06:30 -0500
Subject: [PATCH 0760/1129] nixos/gitea: add a nixos test to ensure the initial
 database migration succeeds so the application can start

---
 nixos/release.nix     |  1 +
 nixos/tests/gitea.nix | 74 +++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 75 insertions(+)
 create mode 100644 nixos/tests/gitea.nix

diff --git a/nixos/release.nix b/nixos/release.nix
index 4647f28be186..a3d33887db27 100644
--- a/nixos/release.nix
+++ b/nixos/release.nix
@@ -301,6 +301,7 @@ in rec {
   tests.fsck = callTest tests/fsck.nix {};
   tests.fwupd = callTest tests/fwupd.nix {};
   tests.gdk-pixbuf = callTest tests/gdk-pixbuf.nix {};
+  tests.gitea = callSubTests tests/gitea.nix {};
   tests.gitlab = callTest tests/gitlab.nix {};
   tests.gitolite = callTest tests/gitolite.nix {};
   tests.gjs = callTest tests/gjs.nix {};
diff --git a/nixos/tests/gitea.nix b/nixos/tests/gitea.nix
new file mode 100644
index 000000000000..7ffe05ef3f1f
--- /dev/null
+++ b/nixos/tests/gitea.nix
@@ -0,0 +1,74 @@
+{ system ? builtins.currentSystem }:
+
+with import ../lib/testing.nix { inherit system; };
+with pkgs.lib;
+
+{
+  mysql = makeTest {
+    name = "gitea-mysql";
+    meta.maintainers = [ maintainers.aanderse ];
+
+    machine =
+      { config, pkgs, ... }:
+      { services.mysql.enable = true;
+        services.mysql.package = pkgs.mariadb;
+        services.mysql.ensureDatabases = [ "gitea" ];
+        services.mysql.ensureUsers = [
+          { name = "gitea";
+            ensurePermissions = { "gitea.*" = "ALL PRIVILEGES"; };
+          }
+        ];
+
+        services.gitea.enable = true;
+        services.gitea.database.type = "mysql";
+        services.gitea.database.socket = "/run/mysqld/mysqld.sock";
+      };
+
+    testScript = ''
+      startAll;
+
+      $machine->waitForUnit('gitea.service');
+      $machine->waitForOpenPort('3000');
+      $machine->succeed("curl --fail http://localhost:3000/");
+    '';
+  };
+
+  postgres = makeTest {
+    name = "gitea-postgres";
+    meta.maintainers = [ maintainers.aanderse ];
+
+    machine =
+      { config, pkgs, ... }:
+      {
+        services.gitea.enable = true;
+        services.gitea.database.type = "postgres";
+        services.gitea.database.password = "secret";
+      };
+
+    testScript = ''
+      startAll;
+
+      $machine->waitForUnit('gitea.service');
+      $machine->waitForOpenPort('3000');
+      $machine->succeed("curl --fail http://localhost:3000/");
+    '';
+  };
+
+  sqlite = makeTest {
+    name = "gitea-sqlite";
+    meta.maintainers = [ maintainers.aanderse ];
+
+    machine =
+      { config, pkgs, ... }:
+      { services.gitea.enable = true;
+      };
+
+    testScript = ''
+      startAll;
+
+      $machine->waitForUnit('gitea.service');
+      $machine->waitForOpenPort('3000');
+      $machine->succeed("curl --fail http://localhost:3000/");
+    '';
+  };
+}

From 4254b58ffdb32be5b4c9694ab50597a9e6aa3567 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 15:02:35 -0800
Subject: [PATCH 0761/1129] quodlibet: 4.1.0 -> 4.2.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/quodlibet/versions
---
 pkgs/applications/audio/quodlibet/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/audio/quodlibet/default.nix b/pkgs/applications/audio/quodlibet/default.nix
index baf49ff78e59..e26c2496d566 100644
--- a/pkgs/applications/audio/quodlibet/default.nix
+++ b/pkgs/applications/audio/quodlibet/default.nix
@@ -9,7 +9,7 @@
 let optionals = stdenv.lib.optionals; in
 python3.pkgs.buildPythonApplication rec {
   pname = "quodlibet${tag}";
-  version = "4.1.0";
+  version = "4.2.0";
 
   # XXX, tests fail
   # https://github.com/quodlibet/quodlibet/issues/2820
@@ -17,7 +17,7 @@ python3.pkgs.buildPythonApplication rec {
 
   src = fetchurl {
     url = "https://github.com/quodlibet/quodlibet/releases/download/release-${version}/quodlibet-${version}.tar.gz";
-    sha256 = "1vcxx4sz5i4ag74pjpdfw7jkwxfb8jhvn8igcjwd5cccw4gscm2z";
+    sha256 = "0w64i999ipzgjb4c4lzw7jp792amd6km46wahx7m3bpzly55r3f6";
   };
 
   nativeBuildInputs = [ wrapGAppsHook gettext intltool ];

From f757291821215bd67d067bcdce0b9eeadef7ba05 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 15:30:23 -0800
Subject: [PATCH 0762/1129] python36Packages.selenium: 3.14.1 -> 3.141.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-selenium/versions
---
 pkgs/development/python-modules/selenium/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/selenium/default.nix b/pkgs/development/python-modules/selenium/default.nix
index b64b53fb2fbb..ada159aaa121 100644
--- a/pkgs/development/python-modules/selenium/default.nix
+++ b/pkgs/development/python-modules/selenium/default.nix
@@ -23,11 +23,11 @@ in
 
 buildPythonPackage rec {
   pname = "selenium";
-  version = "3.14.1";
+  version = "3.141.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ab192cd046164c40fabcf44b47c66c8b12495142f4a69dcc55ea6eeef096e614";
+    sha256 = "039hf9knvl4s3hp21bzwsp1g5ri9gxsh504dp48lc6nr1av35byy";
   };
 
   buildInputs = [xorg.libX11];

From 64e0a504c9637689bb9731bd8d88487824f281a5 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 15:50:30 -0800
Subject: [PATCH 0763/1129] python36Packages.uncertainties: 3.0.2 -> 3.0.3

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-uncertainties/versions
---
 pkgs/development/python-modules/uncertainties/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/uncertainties/default.nix b/pkgs/development/python-modules/uncertainties/default.nix
index 38c46bd11fa8..2d7fdaa7eca5 100644
--- a/pkgs/development/python-modules/uncertainties/default.nix
+++ b/pkgs/development/python-modules/uncertainties/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "uncertainties";
-  version = "3.0.2";
+  version = "3.0.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "91db922d54dff6094b4ea0d6e058f713a992cdf42e3ebaf73278e1893bfa2942";
+    sha256 = "1hp00k10d5n69s446flss8b4rd02wq8dscvakv7ylfyf2p8y564s";
   };
 
   buildInputs = [ nose numpy ];

From 81b6ef76d04d9046e0b7c0173fa0ecdc0a6944cd Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 15:57:33 -0800
Subject: [PATCH 0764/1129] python36Packages.websockets: 6.0 -> 7.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-websockets/versions
---
 pkgs/development/python-modules/websockets/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/websockets/default.nix b/pkgs/development/python-modules/websockets/default.nix
index 0628b3c869a8..2e0caae4b469 100644
--- a/pkgs/development/python-modules/websockets/default.nix
+++ b/pkgs/development/python-modules/websockets/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "websockets";
-  version = "6.0";
+  version = "7.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "8f3b956d11c5b301206382726210dc1d3bee1a9ccf7aadf895aaf31f71c3716c";
+    sha256 = "17vwr6sa1y3lb24wzfyyc98c5v03di4j8f24qkqa9vsvaghc7qq8";
   };
 
   disabled = pythonOlder "3.3";

From 2df2072feb4c9947373469588146915098dce0b8 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 16:01:14 -0800
Subject: [PATCH 0765/1129] python36Packages.texttable: 1.4.0 -> 1.5.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-texttable/versions
---
 pkgs/development/python-modules/texttable/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/texttable/default.nix b/pkgs/development/python-modules/texttable/default.nix
index fed9a3fd7330..6747ae78f49c 100644
--- a/pkgs/development/python-modules/texttable/default.nix
+++ b/pkgs/development/python-modules/texttable/default.nix
@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "texttable";
-  version = "1.4.0";
+  version = "1.5.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "95e8cfe85f8395a7eacdfbc8f09d885b9ef3a6ac6ead0364ea721de1127aa36b";
+    sha256 = "0mzv6zs8ciwnf83fwikqmmjwbzqmdja3imn4b4k209f80g0rk8qv";
   };
 
   meta = {

From ac079732ce8b1e9096f6636fab2f8b829656c0d9 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 16:09:31 -0800
Subject: [PATCH 0766/1129] python36Packages.uncompyle6: 3.2.3 -> 3.2.4

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-uncompyle6/versions
---
 pkgs/development/python-modules/uncompyle6/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/uncompyle6/default.nix b/pkgs/development/python-modules/uncompyle6/default.nix
index f0428f176034..ed177be1c195 100644
--- a/pkgs/development/python-modules/uncompyle6/default.nix
+++ b/pkgs/development/python-modules/uncompyle6/default.nix
@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "uncompyle6";
-  version = "3.2.3";
+  version = "3.2.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "bd882f3c979b49d28ba7accc5ce7380ced8cab12e782e9170769ca15f0b81f8a";
+    sha256 = "0lv0ks7w5bsl8bndm6ikl4yprkq2ps23y409ldlycrvlggjg44y5";
   };
 
   checkInputs = [ nose pytest hypothesis six ];

From c4c3c8fd3e4fe6da4272b6dfa440940d4dfa7b98 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 16:12:31 -0800
Subject: [PATCH 0767/1129] python27Packages.python-stdnum: 1.9 -> 1.10

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python2.7-python-stdnum/versions
---
 pkgs/development/python-modules/python-stdnum/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/python-stdnum/default.nix b/pkgs/development/python-modules/python-stdnum/default.nix
index 381ecec996d1..582192113243 100644
--- a/pkgs/development/python-modules/python-stdnum/default.nix
+++ b/pkgs/development/python-modules/python-stdnum/default.nix
@@ -1,13 +1,13 @@
 { lib, fetchPypi, buildPythonPackage, isPy3k }:
 
 buildPythonPackage rec {
-  version = "1.9";
+  version = "1.10";
   pname = "python-stdnum";
   # Failing tests and dependency issue on Py3k
   disabled = isPy3k;
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d587a520182f9d8aef7659cca429f4382881589c8883a0a55322b2f94970bdb3";
+    sha256 = "0prs63q8zdgwr5cxc5a43zvsm66l0gf9jk19qdf85m6isnp5186a";
   };
   meta = {
     homepage = https://arthurdejong.org/python-stdnum/;

From e01605be153906394cd35cd728e8e7c7fbce473e Mon Sep 17 00:00:00 2001
From: Brian Olsen <brian@maven-group.org>
Date: Tue, 6 Nov 2018 00:40:52 +0100
Subject: [PATCH 0768/1129] nixos/rspamd: Add options for postfix integration

The `rmilter` module has options for configuring `postfix` to use it but
since that module is deprecated because rspamd now has a builtin worker
that supports the milter protocol this commit adds similar `postfix`
integration options directly to the `rspamd` module.
---
 nixos/modules/services/mail/rspamd.nix | 44 +++++++++++++++++++++++++-
 nixos/tests/rspamd.nix                 | 44 ++++++++++++++++++++++++++
 2 files changed, 87 insertions(+), 1 deletion(-)

diff --git a/nixos/modules/services/mail/rspamd.nix b/nixos/modules/services/mail/rspamd.nix
index 927fc4d6a356..1a2a9eca96a2 100644
--- a/nixos/modules/services/mail/rspamd.nix
+++ b/nixos/modules/services/mail/rspamd.nix
@@ -6,6 +6,7 @@ let
 
   cfg = config.services.rspamd;
   opts = options.services.rspamd;
+  postfixCfg = config.services.postfix;
 
   bindSocketOpts = {options, config, ... }: {
     options = {
@@ -309,7 +310,30 @@ in
         description = ''
           Group to use when no root privileges are required.
         '';
-       };
+      };
+
+      postfix = {
+        enable = mkOption {
+          type = types.bool;
+          default = false;
+          description = "Add rspamd milter to postfix main.conf";
+        };
+
+        config = mkOption {
+          type = with types; attrsOf (either bool (either str (listOf str)));
+          description = ''
+            Addon to postfix configuration
+          '';
+          default = {
+            smtpd_milters = ["unix:/run/rspamd/rspamd-milter.sock"];
+            non_smtpd_milters = ["unix:/run/rspamd/rspamd-milter.sock"];
+          };
+          example = {
+            smtpd_milters = ["unix:/run/rspamd/rspamd-milter.sock"];
+            non_smtpd_milters = ["unix:/run/rspamd/rspamd-milter.sock"];
+          };
+        };
+      };
     };
   };
 
@@ -318,6 +342,24 @@ in
 
   config = mkIf cfg.enable {
     services.rspamd.overrides = configOverrides;
+    services.rspamd.workers = mkIf cfg.postfix.enable {
+      controller = {};
+      rspamd_proxy = {
+        bindSockets = [ {
+          mode = "0660";
+          socket = "/run/rspamd/rspamd-milter.sock";
+          owner = cfg.user;
+          group = postfixCfg.group;
+        } ];
+        extraConfig = ''
+          upstream "local" {
+            default = yes; # Self-scan upstreams are always default
+            self_scan = yes; # Enable self-scan
+          }
+        '';
+      };
+    };
+    services.postfix.config = mkIf cfg.postfix.enable cfg.postfix.config;
 
     # Allow users to run 'rspamc' and 'rspamadm'.
     environment.systemPackages = [ pkgs.rspamd ];
diff --git a/nixos/tests/rspamd.nix b/nixos/tests/rspamd.nix
index ccfe8f7bb0d8..076632a70bab 100644
--- a/nixos/tests/rspamd.nix
+++ b/nixos/tests/rspamd.nix
@@ -181,4 +181,48 @@ in
       $machine->log($machine->succeed("cat /etc/tests/muh.eml | rspamc -h 127.0.0.1:11334 symbols | grep NO_MUH"));
     '';
   };
+  postfixIntegration = makeTest {
+    name = "rspamd-postfix-integration";
+    machine = {
+      environment.systemPackages = with pkgs; [ msmtp ];
+      environment.etc."tests/gtube.eml".text = ''
+        From: Sheep1<bah@example.com>
+        To: Sheep2<tester@example.com>
+        Subject: Evil cows
+
+        I find cows to be evil don't you?
+
+        XJS*C4JDBQADN1.NSBN3*2IDNEN*GTUBE-STANDARD-ANTI-UBE-TEST-EMAIL*C.34X
+      '';
+      environment.etc."tests/example.eml".text = ''
+        From: Sheep1<bah@example.com>
+        To: Sheep2<tester@example.com>
+        Subject: Evil cows
+
+        I find cows to be evil don't you?
+      '';
+      users.users.tester.password = "test";
+      services.postfix = {
+        enable = true;
+        destination = ["example.com"];
+      };
+      services.rspamd = {
+        enable = true;
+        postfix.enable = true;
+      };
+    };
+    testScript = ''
+      ${initMachine}
+      $machine->waitForOpenPort(11334);
+      $machine->waitForOpenPort(25);
+      ${checkSocket "/run/rspamd/rspamd-milter.sock" "rspamd" "postfix" "660" }
+      $machine->log($machine->succeed("rspamc -h 127.0.0.1:11334 stat"));
+      $machine->log($machine->succeed("msmtp --host=localhost -t --read-envelope-from < /etc/tests/example.eml"));
+      $machine->log($machine->fail("msmtp --host=localhost -t --read-envelope-from < /etc/tests/gtube.eml"));
+
+      $machine->waitUntilFails('[ "$(postqueue -p)" != "Mail queue is empty" ]');
+      $machine->fail("journalctl -u postfix | grep -i error >&2");
+      $machine->fail("journalctl -u postfix | grep -i warning >&2");
+    '';
+  };
 }

From fede4c7bd4ef1a5d5339c02cc64ebf3a510275eb Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 16:41:44 -0800
Subject: [PATCH 0769/1129] python36Packages.qtconsole: 4.4.1 -> 4.4.2

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-qtconsole/versions
---
 pkgs/development/python-modules/qtconsole/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/qtconsole/default.nix b/pkgs/development/python-modules/qtconsole/default.nix
index 67b9a07a36db..8c0be1f0a540 100644
--- a/pkgs/development/python-modules/qtconsole/default.nix
+++ b/pkgs/development/python-modules/qtconsole/default.nix
@@ -14,11 +14,11 @@
 
 buildPythonPackage rec {
   pname = "qtconsole";
-  version = "4.4.1";
+  version = "4.4.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "7870b19e6a6b0ab3acc09ee65463c0ca7568b3a01a6902d7c4e1ed2c4fc4e176";
+    sha256 = "1yihnxya9kll24fp4a929mria930i9r20kx43sjjwh92gcb2k9gs";
   };
 
   buildInputs = [ nose ] ++ lib.optionals isPy27 [mock];

From 1cb2cf605090f5db3cb5b1ae6a0491e816e35244 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 16:52:59 -0800
Subject: [PATCH 0770/1129] python36Packages.toml: 0.9.6 -> 0.10.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-toml/versions
---
 pkgs/development/python-modules/toml/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/toml/default.nix b/pkgs/development/python-modules/toml/default.nix
index 9e408f2cb169..29d0a4c692f3 100644
--- a/pkgs/development/python-modules/toml/default.nix
+++ b/pkgs/development/python-modules/toml/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "toml";
-  version = "0.9.6";
+  version = "0.10.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "380178cde50a6a79f9d2cf6f42a62a5174febe5eea4126fe4038785f1d888d42";
+    sha256 = "0p1xww2mzkhqvxkfvmfzm58bbfj812zhdz4rwdjiv94ifz2q37r2";
   };
 
   # This package has a test script (built for Travis) that involves a)

From df7a5e8bb149311d7045d9f41bc344b79c0a9056 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 16:58:33 -0800
Subject: [PATCH 0771/1129] python36Packages.uproot-methods: 0.2.5 -> 0.2.6

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-uproot-methods/versions
---
 pkgs/development/python-modules/uproot-methods/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/uproot-methods/default.nix b/pkgs/development/python-modules/uproot-methods/default.nix
index b3c2ce714ce4..3c859ea2d305 100644
--- a/pkgs/development/python-modules/uproot-methods/default.nix
+++ b/pkgs/development/python-modules/uproot-methods/default.nix
@@ -6,12 +6,12 @@
 }:
 
 buildPythonPackage rec {
-  version = "0.2.5";
+  version = "0.2.6";
   pname = "uproot-methods";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "7d5563b3335af414a12caf5b350c952fdc7576abb17630382de5564a7c254ae6";
+    sha256 = "1z8gganf8p68z586zzx440dpkar3djdbc4f7670bkriyix0z6lxn";
   };
 
   propagatedBuildInputs = [ numpy awkward ];

From 84a4c52529cec4808c786c3dbc5ff0db5afe134e Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 17:13:53 -0800
Subject: [PATCH 0772/1129] python36Packages.stevedore: 1.29.0 -> 1.30.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-stevedore/versions
---
 pkgs/development/python-modules/stevedore/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/stevedore/default.nix b/pkgs/development/python-modules/stevedore/default.nix
index 6d088d52d7e7..8027688c9ea5 100644
--- a/pkgs/development/python-modules/stevedore/default.nix
+++ b/pkgs/development/python-modules/stevedore/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "stevedore";
-  version = "1.29.0";
+  version = "1.30.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1e153545aca7a6a49d8337acca4f41c212fbfa60bf864ecd056df0cafb9627e8";
+    sha256 = "0161pwgv6514ks6lky8642phlcqks5w8j5sacdnbfgx5s6nwfaxr";
   };
 
   doCheck = false;

From 76eabcbe6be8b9b7ad543fdecaba8a0bdf9b6600 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 17:27:20 -0800
Subject: [PATCH 0773/1129] qtbitcointrader: 1.40.13 -> 1.40.23

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/qtbitcointrader/versions
---
 pkgs/applications/misc/qtbitcointrader/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/qtbitcointrader/default.nix b/pkgs/applications/misc/qtbitcointrader/default.nix
index 90908c67b4e0..4865ed7ee000 100644
--- a/pkgs/applications/misc/qtbitcointrader/default.nix
+++ b/pkgs/applications/misc/qtbitcointrader/default.nix
@@ -1,14 +1,14 @@
 { stdenv, fetchurl, qt5 }:
 
 let
-  version = "1.40.13";
+  version = "1.40.23";
 in
 stdenv.mkDerivation {
   name = "qtbitcointrader-${version}";
 
   src = fetchurl {
     url = "https://github.com/JulyIGHOR/QtBitcoinTrader/archive/v${version}.tar.gz";
-    sha256 = "0d6b9ls742nghzg5y97dx7myvv8i88f0s27lhr52yy4833hdxdwn";
+    sha256 = "11r2jzb09a62hf9fkg6aw8pg2js8c87k6lba9xz2q8n6d6jv44r1";
   };
 
   buildInputs = [ qt5.qtbase qt5.qtmultimedia qt5.qtscript ];

From bdd01918631ab8697f27bd78e04ad932c92376c0 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 17:33:53 -0800
Subject: [PATCH 0774/1129] python36Packages.splinter: 0.8.0 -> 0.9.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-splinter/versions
---
 pkgs/development/python-modules/splinter/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/splinter/default.nix b/pkgs/development/python-modules/splinter/default.nix
index 91a94a6e8419..5a2ee5877c92 100644
--- a/pkgs/development/python-modules/splinter/default.nix
+++ b/pkgs/development/python-modules/splinter/default.nix
@@ -8,11 +8,11 @@
 
 buildPythonPackage rec {
   pname = "splinter";
-  version = "0.8.0";
+  version = "0.9.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "463e98135a85ff98f6c0084cb34cea1fe07827444958d224c087a84093a65281";
+    sha256 = "0il187zajpiw4p011nkb4bcjxxd85f131bcqz31201ff14ifvih8";
   };
 
   propagatedBuildInputs = [ selenium ];

From 0a07d0a4f55dd5b0543a7154fa557e8c826d781e Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 18:08:29 -0800
Subject: [PATCH 0775/1129] python36Packages.patsy: 0.5.0 -> 0.5.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-patsy/versions
---
 pkgs/development/python-modules/patsy/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/patsy/default.nix b/pkgs/development/python-modules/patsy/default.nix
index 9efa3126ce3b..a21b4027bbb2 100644
--- a/pkgs/development/python-modules/patsy/default.nix
+++ b/pkgs/development/python-modules/patsy/default.nix
@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "patsy";
-  version = "0.5.0";
+  version = "0.5.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0fw888zd2s7f5zxm9f98ss93qhwv0sqnbdy21ipj33ccqgakhpz0";
+    sha256 = "149rbrdzwns0ay88caf1zsm1r53v1q5np1mrb36na50y432cw5gi";
   };
 
   checkInputs = [ nose parameterized ];

From 3fc6daa6dfb2977fbf3a69e862509a13194b34db Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 18:38:41 -0800
Subject: [PATCH 0776/1129] python36Packages.libversion: 1.0.0 -> 1.1.2

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-libversion/versions
---
 pkgs/development/python-modules/libversion/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/libversion/default.nix b/pkgs/development/python-modules/libversion/default.nix
index 75e55944e987..82d8b8b9c5e2 100644
--- a/pkgs/development/python-modules/libversion/default.nix
+++ b/pkgs/development/python-modules/libversion/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "libversion";
-  version = "1.0.0";
+  version = "1.1.2";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "18hhn7b7458lybs8z8ckh0idm7a2g4c4b5v2p9rr0lb618rchvds";
+    sha256 = "040adjp5xjr4vwz3x2mspkymlcmljvqvacr88aw0jijq1h6fm59c";
   };
 
   nativeBuildInputs = [ pkgconfig ];

From e28ebc8ad23b05bb546dd9e4653ad04e4e29db1f Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 18:42:37 -0800
Subject: [PATCH 0777/1129] python36Packages.pyaxmlparser: 0.3.11 -> 0.3.13

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-pyaxmlparser/versions
---
 pkgs/development/python-modules/pyaxmlparser/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pyaxmlparser/default.nix b/pkgs/development/python-modules/pyaxmlparser/default.nix
index 9f4f6627e2c8..9ea3a3eda071 100644
--- a/pkgs/development/python-modules/pyaxmlparser/default.nix
+++ b/pkgs/development/python-modules/pyaxmlparser/default.nix
@@ -1,12 +1,12 @@
 { buildPythonPackage, stdenv, lxml, click, fetchPypi }:
 
 buildPythonPackage rec {
-  version = "0.3.11";
+  version = "0.3.13";
   pname = "pyaxmlparser";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "dbe5ca9ddcf2f5041f6e5e3acc81d2940c696db89de4f840535a256e78f5e489";
+    sha256 = "1mzdrifnaky57vkmdvg0rgjss55xkxaramci3wpv4h65lmk95988";
   };
 
   propagatedBuildInputs = [ lxml click ];

From 9707e27b53476aa7add78c1843c370d05b5c53d9 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 19:32:20 -0800
Subject: [PATCH 0778/1129] python36Packages.peppercorn: 0.5 -> 0.6

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-peppercorn/versions
---
 pkgs/development/python-modules/peppercorn/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/peppercorn/default.nix b/pkgs/development/python-modules/peppercorn/default.nix
index 5a07fc217a95..f62ff669c865 100644
--- a/pkgs/development/python-modules/peppercorn/default.nix
+++ b/pkgs/development/python-modules/peppercorn/default.nix
@@ -5,11 +5,11 @@
 
 buildPythonPackage rec {
   pname = "peppercorn";
-  version = "0.5";
+  version = "0.6";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "921cba5d51fa211e6da0fbd2120b9a98d663422a80f5bb669ad81ffb0909774b";
+    sha256 = "1ip4bfwcpwkq9hz2dai14k2cyabvwrnvcvrcmzxmqm04g8fnimwn";
   };
 
   meta = with stdenv.lib; {

From 8321ecf4da12f2dcfaa9c8ff038ba742bdba6db0 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 19:53:54 -0800
Subject: [PATCH 0779/1129] python36Packages.pytest-datafiles: 1.0 -> 2.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-pytest-datafiles/versions
---
 pkgs/development/python-modules/pytest-datafiles/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pytest-datafiles/default.nix b/pkgs/development/python-modules/pytest-datafiles/default.nix
index 70a6546189b3..1c323929a8e0 100644
--- a/pkgs/development/python-modules/pytest-datafiles/default.nix
+++ b/pkgs/development/python-modules/pytest-datafiles/default.nix
@@ -2,10 +2,10 @@
 
 buildPythonPackage rec {
   pname = "pytest-datafiles";
-  version = "1.0";
+  version = "2.0";
   src = fetchPypi {
     inherit version pname;
-    sha256 = "1w5435b5pimk6479ml53lmld3qbag7awcg4gl3ljdywc1v096r5v";
+    sha256 = "1yfvaqbqvjfikz215kwn6qiwwn9girka93zq4jphgfyvn75jjcql";
   };
 
   buildInputs = [ py pytest ];

From 85d1e62ab528adf98d370193ca5e1d7ae58aca7e Mon Sep 17 00:00:00 2001
From: Spencer Baugh <sbaugh@catern.com>
Date: Fri, 9 Nov 2018 03:55:14 +0000
Subject: [PATCH 0780/1129] freetds: enable odbcSupport by default

There is no reason not to, and some packages which I'm working on,
requires this.
---
 pkgs/development/libraries/freetds/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/libraries/freetds/default.nix b/pkgs/development/libraries/freetds/default.nix
index 4f07316bd3f1..536859bc4b34 100644
--- a/pkgs/development/libraries/freetds/default.nix
+++ b/pkgs/development/libraries/freetds/default.nix
@@ -1,6 +1,6 @@
 { stdenv, fetchurl, autoreconfHook, pkgconfig
 , openssl
-, odbcSupport ? false, unixODBC ? null }:
+, odbcSupport ? true, unixODBC ? null }:
 
 assert odbcSupport -> unixODBC != null;
 

From 8c666a0a457b719993db63ceeff013fefd58e7d9 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 20:03:14 -0800
Subject: [PATCH 0781/1129] python36Packages.nibabel: 2.3.0 -> 2.3.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-nibabel/versions
---
 pkgs/development/python-modules/nibabel/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/nibabel/default.nix b/pkgs/development/python-modules/nibabel/default.nix
index 11770fa8461c..7491865057b3 100644
--- a/pkgs/development/python-modules/nibabel/default.nix
+++ b/pkgs/development/python-modules/nibabel/default.nix
@@ -8,11 +8,11 @@
 
 buildPythonPackage rec {
   pname = "nibabel";
-  version = "2.3.0";
+  version = "2.3.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "bf34aeb0f7ca52dc528ae4f842607cea307b334163857ff1d64d43068f637ada";
+    sha256 = "1xb6wgc67c0l7csjdd0k5r2p783rlahknrhqqa13qwgxbybadr53";
   };
 
   propagatedBuildInputs = [

From d85addfb397298fd4ef55cb9439d817cae9513ce Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 20:24:09 -0800
Subject: [PATCH 0782/1129] python36Packages.pytest-repeat: 0.6.0 -> 0.7.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-pytest-repeat/versions
---
 pkgs/development/python-modules/pytest-repeat/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pytest-repeat/default.nix b/pkgs/development/python-modules/pytest-repeat/default.nix
index eca14c8289a9..1b30611eb9d6 100644
--- a/pkgs/development/python-modules/pytest-repeat/default.nix
+++ b/pkgs/development/python-modules/pytest-repeat/default.nix
@@ -7,11 +7,11 @@
 
 buildPythonPackage rec {
   pname = "pytest-repeat";
-  version = "0.6.0";
+  version = "0.7.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "84aba2fcca5dc2f32ae626a01708f469f17b3384ec3d1f507698077f274909d6";
+    sha256 = "0axbrpqal3cqw9zq6dakdbg49pnf5gvyvq6yn93hp1ayc7fnhzk3";
   };
 
   buildInputs = [ setuptools_scm pytest ];

From 6c3558405bf15aa33bbe63cb0db5d2efe1bf017f Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 20:41:45 -0800
Subject: [PATCH 0783/1129] python36Packages.Logbook: 1.4.0 -> 1.4.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-logbook/versions
---
 pkgs/development/python-modules/Logbook/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/Logbook/default.nix b/pkgs/development/python-modules/Logbook/default.nix
index 711f0f5457ba..5b0e10340bd6 100644
--- a/pkgs/development/python-modules/Logbook/default.nix
+++ b/pkgs/development/python-modules/Logbook/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "Logbook";
-  version = "1.4.0";
+  version = "1.4.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1n8wzm2nc99gbvb44y2fbb59sy3c4awkwfgy4pbwv7z892ykw2iw";
+    sha256 = "1nsnz9qdcba85q57qbam6skfvq2k7savn64qdy44cjnh0vkmqdrj";
   };
 
   checkInputs = [ pytest ] ++ lib.optionals (!isPy3k) [ mock ];

From 42e80edee398db9b7128f1fa525a250de61be7d2 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 20:50:50 -0800
Subject: [PATCH 0784/1129] python36Packages.neovim: 0.2.6 -> 0.3.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-neovim/versions
---
 pkgs/development/python-modules/neovim/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/neovim/default.nix b/pkgs/development/python-modules/neovim/default.nix
index 6d96732cbb07..20479093a471 100644
--- a/pkgs/development/python-modules/neovim/default.nix
+++ b/pkgs/development/python-modules/neovim/default.nix
@@ -11,11 +11,11 @@
 
 buildPythonPackage rec {
   pname = "neovim";
-  version = "0.2.6";
+  version = "0.3.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0xlj54w9bnmq4vidk6r08hwa6az7drahi08w1qf4j9q45rs8mrbc";
+    sha256 = "18x7gi1idsch11hijvy0mm2mk4f42rapz9niax4rnak14x2klqq2";
   };
 
   checkInputs = [ nose ];

From b1f47e3d82277d54380e44bda1449c7b986c55df Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 20:59:31 -0800
Subject: [PATCH 0785/1129] python36Packages.mwclient: 0.9.1 -> 0.9.2

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-mwclient/versions
---
 pkgs/development/python-modules/mwclient/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/mwclient/default.nix b/pkgs/development/python-modules/mwclient/default.nix
index 3544bd631a54..37785730252c 100644
--- a/pkgs/development/python-modules/mwclient/default.nix
+++ b/pkgs/development/python-modules/mwclient/default.nix
@@ -2,7 +2,7 @@
 , responses, mock, pytestcov, pytest, pytestcache, pytestpep8, coverage, six }:
 
 buildPythonPackage rec {
-  version = "0.9.1";
+  version = "0.9.2";
   pname = "mwclient";
   name = "${pname}-${version}";
 
@@ -10,7 +10,7 @@ buildPythonPackage rec {
     owner = "mwclient";
     repo = "mwclient";
     rev = "v${version}";
-    sha256 = "0l7l5j7znlyn2yqvdfxr4dq23wyp6d8z49pnkjqy2kan11nrjzym";
+    sha256 = "0553pa5gm74k0lsrbcw5ic8jypnh5c3p58i50kzjvgcqz4frsafi";
   };
 
   buildInputs = [ mock responses pytestcov pytest pytestcache pytestpep8 coverage ];

From 32922dda45a246272b6b5ebe7b68f8df2b00ac80 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 13:39:47 -0800
Subject: [PATCH 0786/1129] SDL2_mixer: 2.0.2 -> 2.0.4

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/sdl2_mixer/versions
---
 pkgs/development/libraries/SDL2_mixer/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/SDL2_mixer/default.nix b/pkgs/development/libraries/SDL2_mixer/default.nix
index 3819aeb3c316..61e15d621bcd 100644
--- a/pkgs/development/libraries/SDL2_mixer/default.nix
+++ b/pkgs/development/libraries/SDL2_mixer/default.nix
@@ -5,11 +5,11 @@
 
 stdenv.mkDerivation rec {
   name = "SDL2_mixer-${version}";
-  version = "2.0.2";
+  version = "2.0.4";
 
   src = fetchurl {
     url = "https://www.libsdl.org/projects/SDL_mixer/release/${name}.tar.gz";
-    sha256 = "1fw3kkqi5346ai5if4pxrcbhs5c4vv3a4smgz6fl6kyaxwkmwqaf";
+    sha256 = "0694vsz5bjkcdgfdra6x9fq8vpzrl8m6q96gh58df7065hw5mkxl";
   };
 
   preAutoreconf = ''

From e0e39a63f44de8f2c7294b948340a46c7a7fdabf Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 13:02:41 -0800
Subject: [PATCH 0787/1129] SDL2_image: 2.0.3 -> 2.0.4

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/sdl2_image/versions
---
 pkgs/development/libraries/SDL2_image/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/SDL2_image/default.nix b/pkgs/development/libraries/SDL2_image/default.nix
index 17a2dd14b272..5ab4a0dc6c7f 100644
--- a/pkgs/development/libraries/SDL2_image/default.nix
+++ b/pkgs/development/libraries/SDL2_image/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "SDL2_image-${version}";
-  version = "2.0.3";
+  version = "2.0.4";
 
   src = fetchurl {
     url = "https://www.libsdl.org/projects/SDL_image/release/${name}.tar.gz";
-    sha256 = "0s13dmakn21q6yw8avl67d4zkxzl1wap6l5nwf6cvzrmlxfw441m";
+    sha256 = "1b6f7002bm007y3zpyxb5r6ag0lml51jyvx1pwpj9sq24jfc8kp7";
   };
 
   buildInputs = [ SDL2 libpng libjpeg libtiff libungif libXpm zlib ]

From 5d0295acb6e17d2457f5134159ca00f8078ce14b Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 21:26:15 -0800
Subject: [PATCH 0788/1129] python36Packages.pyfiglet: 0.7.5 -> 0.7.6

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-pyfiglet/versions
---
 pkgs/development/python-modules/pyfiglet/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pyfiglet/default.nix b/pkgs/development/python-modules/pyfiglet/default.nix
index ede8e965db94..f03bd2666215 100644
--- a/pkgs/development/python-modules/pyfiglet/default.nix
+++ b/pkgs/development/python-modules/pyfiglet/default.nix
@@ -1,12 +1,12 @@
 { stdenv, buildPythonPackage, fetchPypi }:
 
 buildPythonPackage rec {
-  version = "0.7.5";
+  version = "0.7.6";
   pname = "pyfiglet";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "04jy4182hn5xfs6jf432gxclfj1rhssd7bsf0b4gymrjzkhr8qa4";
+    sha256 = "08npllxf85ccvhd27iyq2j1b813s1947q5b1x7vxv9hdni8rdmcp";
   };
 
   doCheck = false;

From 3e5abf1215aa4718ef36cb2b310e7721a40f9add Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 21:43:41 -0800
Subject: [PATCH 0789/1129] python36Packages.moviepy: 0.2.2.11 -> 0.2.3.5

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-moviepy/versions
---
 pkgs/development/python-modules/moviepy/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/moviepy/default.nix b/pkgs/development/python-modules/moviepy/default.nix
index 637c014cb1ab..960fb604ec9b 100644
--- a/pkgs/development/python-modules/moviepy/default.nix
+++ b/pkgs/development/python-modules/moviepy/default.nix
@@ -10,11 +10,11 @@
 
 buildPythonPackage rec {
   pname = "moviepy";
-  version = "0.2.2.11";
+  version = "0.2.3.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d937d817e534efc54eaee2fc4c0e70b48fcd81e1528cd6425f22178704681dc3";
+    sha256 = "1jrdpnzyk373zlh8lvjdabyvljz3sahshbdgbpk6w9vx5hfacvjk";
   };
 
   # No tests

From a117531c9aa0829b82572aa586d7eb387f1f30ac Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 21:54:19 -0800
Subject: [PATCH 0790/1129] python36Packages.plyvel: 0.9 -> 1.0.5

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-plyvel/versions
---
 pkgs/development/python-modules/plyvel/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/plyvel/default.nix b/pkgs/development/python-modules/plyvel/default.nix
index 21561fab0351..b3592c19f9a3 100644
--- a/pkgs/development/python-modules/plyvel/default.nix
+++ b/pkgs/development/python-modules/plyvel/default.nix
@@ -8,11 +8,11 @@
 
 buildPythonPackage rec {
   pname = "plyvel";
-  version = "0.9";
+  version = "1.0.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1scq75qyks9vmjd19bx57f2y60mkdr44ajvb12p3cjg439l96zaq";
+    sha256 = "14cbdyq1s8xmvha3lj942gw478cd6jyhkw8n0mhxpgbz8px9jkfn";
   };
 
   buildInputs = [ pkgs.leveldb ] ++ stdenv.lib.optional isPy3k pytest;

From 23ef17a6e4d19a701d709cf4acafd458cacab883 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 22:13:54 -0800
Subject: [PATCH 0791/1129] python36Packages.murmurhash: 0.28.0 -> 1.0.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-murmurhash/versions
---
 pkgs/development/python-modules/murmurhash/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/murmurhash/default.nix b/pkgs/development/python-modules/murmurhash/default.nix
index a3a9096a335c..b3cea69c098d 100644
--- a/pkgs/development/python-modules/murmurhash/default.nix
+++ b/pkgs/development/python-modules/murmurhash/default.nix
@@ -6,11 +6,11 @@
 
 buildPythonPackage rec {
   pname = "murmurhash";
-  version = "0.28.0";
+  version = "1.0.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "16id8jppw8r54wisrlaaiprcszzb7d7lbpnskqn38s8i7vnkf4b5";
+    sha256 = "02wbyjixvzd6l1mljpm1ci7x835zhk3nqxgy7kvbi4jimvairs9q";
   };
 
   buildInputs = [

From 39d9261bea4357f6d29f5d6054a733e7a1c2b9c6 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 22:32:41 -0800
Subject: [PATCH 0792/1129] python36Packages.cftime: 1.0.1 -> 1.0.2.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-cftime/versions
---
 pkgs/development/python-modules/cftime/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/cftime/default.nix b/pkgs/development/python-modules/cftime/default.nix
index 9190f274a24f..4c11267b041d 100644
--- a/pkgs/development/python-modules/cftime/default.nix
+++ b/pkgs/development/python-modules/cftime/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "cftime";
-  version = "1.0.1";
+  version = "1.0.2.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "20556931f546838d09be5d589482dfae6164e0d403f0aab2163c006b680d3b92";
+    sha256 = "1fxpvy3z0b3ga8ylr54ml7nxsfah2bh5azk43nb565rcka3x909c";
   };
 
   checkInputs = [ pytest coveralls pytestcov ];

From f3eb56c07fc494c847569228828dd7976530f515 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 23:44:36 -0800
Subject: [PATCH 0793/1129] python36Packages.distributed: 1.23.3 -> 1.24.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-distributed/versions
---
 pkgs/development/python-modules/distributed/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/distributed/default.nix b/pkgs/development/python-modules/distributed/default.nix
index 65d0b1ab77f1..e1c61ac7c16f 100644
--- a/pkgs/development/python-modules/distributed/default.nix
+++ b/pkgs/development/python-modules/distributed/default.nix
@@ -26,12 +26,12 @@
 
 buildPythonPackage rec {
   pname = "distributed";
-  version = "1.23.3";
+  version = "1.24.0";
 
   # get full repository need conftest.py to run tests
   src = fetchPypi {
     inherit pname version;
-    sha256 = "2d48a4de280fd7243ca76f9b12db5fe2486fc89dcdb510c77fa51f51733a04cc";
+    sha256 = "1a1wynxzs9i2mdz50fs23r9223fmkpwwr0kprqjyb31ladkk07c4";
   };
 
   checkInputs = [ pytest pytest-repeat pytest-faulthandler pytest-timeout mock joblib ];

From 55bb43e7a0a24bb13d9c3c6761dea6789da90f93 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Thu, 8 Nov 2018 23:58:47 -0800
Subject: [PATCH 0794/1129] python36Packages.dropbox: 9.0.0 -> 9.1.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-dropbox/versions
---
 pkgs/development/python-modules/dropbox/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/dropbox/default.nix b/pkgs/development/python-modules/dropbox/default.nix
index 5d344f180590..7693f7f05689 100644
--- a/pkgs/development/python-modules/dropbox/default.nix
+++ b/pkgs/development/python-modules/dropbox/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "dropbox";
-  version = "9.0.0";
+  version = "9.1.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "385c62c2983c3804ba0064762f9e5f4753ea20a132c727b4961d3b68e1372ac8";
+    sha256 = "0j6p5hgbglpwqd4jl53iqs83537464lybzc0aszi3w6wm6i0dlyq";
   };
 
   # Set DROPBOX_TOKEN environment variable to a valid token.

From 42c2c7bb2f7c422d92ac16feada99f25223da38f Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 00:10:00 -0800
Subject: [PATCH 0795/1129] python36Packages.astral: 1.6.1 -> 1.7.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-astral/versions
---
 pkgs/development/python-modules/astral/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/astral/default.nix b/pkgs/development/python-modules/astral/default.nix
index 1be99b5d4dde..577a92eb8910 100644
--- a/pkgs/development/python-modules/astral/default.nix
+++ b/pkgs/development/python-modules/astral/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "astral";
-  version = "1.6.1";
+  version = "1.7.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "ab0c08f2467d35fcaeb7bad15274743d3ac1ad18b5391f64a0058a9cd192d37d";
+    sha256 = "01raz1c29v08f05l395v1hxllad35m5ld1jj51knb53c0396y248";
   };
 
   propagatedBuildInputs = [ pytz requests ];

From f72bffd94a4c127519def64dcc292d6c88722fb3 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 00:15:32 -0800
Subject: [PATCH 0796/1129] python36Packages.gphoto2: 1.8.3 -> 1.8.5

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-gphoto2/versions
---
 pkgs/development/python-modules/gphoto2/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/gphoto2/default.nix b/pkgs/development/python-modules/gphoto2/default.nix
index 9757cb950dc1..e49012d45025 100644
--- a/pkgs/development/python-modules/gphoto2/default.nix
+++ b/pkgs/development/python-modules/gphoto2/default.nix
@@ -4,11 +4,11 @@
 
 buildPythonPackage rec {
   pname = "gphoto2";
-  version = "1.8.3";
+  version = "1.8.5";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0257f90f0d8342b8bc996ff1b45b2cd3219a29f8123aa21a6da159ee3566e49f";
+    sha256 = "1jvwq7qjr2iazmwdzkmr82iza7snylpm6x0kr9p0z5mkicg1l38l";
   };
 
   nativeBuildInputs = [ pkgconfig ];

From 1330965fa588b479b104469d1c22796a263f37e8 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 00:18:56 -0800
Subject: [PATCH 0797/1129] python36Packages.django_2_1: 2.1.2 -> 2.1.3

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-django/versions
---
 pkgs/development/python-modules/django/2_1.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/django/2_1.nix b/pkgs/development/python-modules/django/2_1.nix
index f79a7c49ca9b..adda83ce7158 100644
--- a/pkgs/development/python-modules/django/2_1.nix
+++ b/pkgs/development/python-modules/django/2_1.nix
@@ -6,13 +6,13 @@
 
 buildPythonPackage rec {
   pname = "Django";
-  version = "2.1.2";
+  version = "2.1.3";
 
   disabled = !isPy3k;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0ibbs76pzy8zd47yviljrp1s66fmbf5b62fixayaznj7pdzavg7g";
+    sha256 = "05k990b9zbj0nfkdcn13f5hg7ppfx9vffz5s0m66imd3mmlb5yhz";
   };
 
   patches = stdenv.lib.optionals withGdal [

From 7534b5e106f1ffee2f88582c69f06dda274e340f Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 00:49:04 -0800
Subject: [PATCH 0798/1129] python36Packages.click-completion: 0.4.1 -> 0.5.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-click-completion/versions
---
 pkgs/development/python-modules/click-completion/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/click-completion/default.nix b/pkgs/development/python-modules/click-completion/default.nix
index a6b36232531b..0dd5e22abf57 100644
--- a/pkgs/development/python-modules/click-completion/default.nix
+++ b/pkgs/development/python-modules/click-completion/default.nix
@@ -4,12 +4,12 @@
 
 buildPythonPackage rec {
   pname = "click-completion";
-  version = "0.4.1";
+  version = "0.5.0";
   disabled = (!isPy3k);
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1fjm22dyma26jrx4ki2z4dwbhcah4r848fz381x64sz5xxq3xdrk";
+    sha256 = "0k3chs301cnyq2jfl12lih5fa6r06nmxmbyp9dwvjm09v8f2c03n";
   };
 
   propagatedBuildInputs = [ click jinja2 shellingham six ];

From fe49fc4ca9c9a4712b981c4c8addc283155c9281 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 01:03:14 -0800
Subject: [PATCH 0799/1129] python36Packages.fonttools: 3.29.1 -> 3.32.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-fonttools/versions
---
 pkgs/development/python-modules/fonttools/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/fonttools/default.nix b/pkgs/development/python-modules/fonttools/default.nix
index ed0b508a8acf..0cab6fc18a5f 100644
--- a/pkgs/development/python-modules/fonttools/default.nix
+++ b/pkgs/development/python-modules/fonttools/default.nix
@@ -8,11 +8,11 @@
 
 buildPythonPackage rec {
   pname = "fonttools";
-  version = "3.29.1";
+  version = "3.32.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "a687ca070daddb7ee25e3472b631acd0e53dbf11ecdf8e76248ee556472ede9d";
+    sha256 = "16cg5v50x905c0dr34wqk70b0n3mqzp41iir2rd73f31d1z9jndq";
     extension = "zip";
   };
 

From 089e32d7fe11108b5a790873667dfa9074862039 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 01:46:03 -0800
Subject: [PATCH 0800/1129] python36Packages.flask-pymongo: 2.1.0 -> 2.2.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-flask-pymongo/versions
---
 pkgs/development/python-modules/Flask-PyMongo/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/Flask-PyMongo/default.nix b/pkgs/development/python-modules/Flask-PyMongo/default.nix
index 7c37bdaddd51..f32f402a3256 100644
--- a/pkgs/development/python-modules/Flask-PyMongo/default.nix
+++ b/pkgs/development/python-modules/Flask-PyMongo/default.nix
@@ -9,11 +9,11 @@
 
 buildPythonPackage rec {
   pname = "Flask-PyMongo";
-  version = "2.1.0";
+  version = "2.2.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "0b99dd99985660ebbc4b34bb44550f88a527cbc573faa01febccce3c4ab28347";
+    sha256 = "0yi1r13p3l1d5dpdfnyp239l6l17nwvyky8y62nmmqxlsp2ja9hi";
   };
 
   checkInputs = [ pytest ];

From 16011ecf33da0a5d4b69ff414f04c76ae3e05652 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 01:58:44 -0800
Subject: [PATCH 0801/1129] python36Packages.exchangelib: 1.11.4 -> 1.12.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-exchangelib/versions
---
 pkgs/development/python-modules/exchangelib/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/exchangelib/default.nix b/pkgs/development/python-modules/exchangelib/default.nix
index b4c2767f9dd6..64686d948134 100644
--- a/pkgs/development/python-modules/exchangelib/default.nix
+++ b/pkgs/development/python-modules/exchangelib/default.nix
@@ -6,14 +6,14 @@
 
 buildPythonPackage rec {
   pname = "exchangelib";
-  version = "1.11.4";
+  version = "1.12.0";
 
   # tests are not present in the PyPI version
   src = fetchFromGitHub {
     owner = "ecederstrand";
     repo = pname;
     rev = "v${version}";
-    sha256 = "1fpbnjnmqm62vll3m2ys1naikch70kqm26hz86f1cl0r2l2afbab";
+    sha256 = "003c4flgsz6my64qm3mf9cb3wfxw0480aj9glf9wdz7xkwaq2l43";
   };
 
   # one test is failing due to it trying to send a request to example.com

From 71416f0d02caf7da8039e879e4ce8871bc0cfe3b Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 02:04:09 -0800
Subject: [PATCH 0802/1129] python36Packages.authres: 1.1.0 -> 1.1.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-authres/versions
---
 pkgs/development/python-modules/authres/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/authres/default.nix b/pkgs/development/python-modules/authres/default.nix
index a0ec276f22d7..8fe664f42310 100644
--- a/pkgs/development/python-modules/authres/default.nix
+++ b/pkgs/development/python-modules/authres/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "authres";
-  version = "1.1.0";
+  version = "1.1.1";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1mcllhrwr23hwa2jn3m15k29ks1205ymwafjzchh8ma664hnzv6v";
+    sha256 = "0bxclx021zn4hhrpaw5fl61bhnf17yqjd0pvwxqfqwdkxdjpx37b";
   };
 
   checkPhase = ''

From 307d283c43a2ca9aa7b5f036c4b0d4a6dc9add31 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 03:05:44 -0800
Subject: [PATCH 0803/1129] python36Packages.dkimpy: 0.8.1 -> 0.9.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-dkimpy/versions
---
 pkgs/development/python-modules/dkimpy/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/dkimpy/default.nix b/pkgs/development/python-modules/dkimpy/default.nix
index 7ce8877bbce0..fbd94900212e 100644
--- a/pkgs/development/python-modules/dkimpy/default.nix
+++ b/pkgs/development/python-modules/dkimpy/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "dkimpy";
-  version = "0.8.1";
+  version = "0.9.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "125xakqg2j5jp4k5kafpnpazh9d97ysgayrsgpvm3nkdj4g8hw1j";
+    sha256 = "1cfj2jsfqbwkrg9y5inz61wxf8z4rrs5js6dizjgsd4lyb3b5inj";
 };
 
   checkInputs = [ pytest ];

From 08cd9b812be1936354531d1cd8b42b792c0110cd Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 03:30:57 -0800
Subject: [PATCH 0804/1129] powerdns: 4.1.4 -> 4.1.5

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/powerdns/versions
---
 pkgs/servers/dns/powerdns/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/dns/powerdns/default.nix b/pkgs/servers/dns/powerdns/default.nix
index 9d3db625d660..f9f94f002a36 100644
--- a/pkgs/servers/dns/powerdns/default.nix
+++ b/pkgs/servers/dns/powerdns/default.nix
@@ -5,11 +5,11 @@
 
 stdenv.mkDerivation rec {
   name = "powerdns-${version}";
-  version = "4.1.4";
+  version = "4.1.5";
 
   src = fetchurl {
     url = "https://downloads.powerdns.com/releases/pdns-${version}.tar.bz2";
-    sha256 = "1m9yhzrxh315gv855c590b2qc8bx31rrnl72pqxrnlix701qch79";
+    sha256 = "12jgkdsh6hzaznq6y9y7hfdpjhnn7ar2qn7x706k9iyqcq55faf3";
   };
 
   nativeBuildInputs = [ pkgconfig ];

From 2e89de61c59ed6f302f16f026855f48f86e5a72c Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Fri, 9 Nov 2018 07:26:18 -0500
Subject: [PATCH 0805/1129] dune: 1.4.0 -> 1.5.0 (#49848)

* dune: 1.4.0 -> 1.5.1

* reason: use dune installPhase
---
 pkgs/development/compilers/reason/default.nix |  7 ++-----
 pkgs/development/tools/ocaml/dune/default.nix | 12 ++++++++----
 2 files changed, 10 insertions(+), 9 deletions(-)

diff --git a/pkgs/development/compilers/reason/default.nix b/pkgs/development/compilers/reason/default.nix
index 0832d14992d1..1b84b9348520 100644
--- a/pkgs/development/compilers/reason/default.nix
+++ b/pkgs/development/compilers/reason/default.nix
@@ -21,12 +21,9 @@ stdenv.mkDerivation rec {
 
   buildFlags = [ "build" ]; # do not "make tests" before reason lib is installed
 
-  installPhase = ''
-    for p in reason rtop
-    do
-      ${dune.installPhase} $p.install
-    done
+  inherit (dune) installPhase;
 
+  postInstall = ''
     wrapProgram $out/bin/rtop \
       --prefix PATH : "${utop}/bin" \
       --set OCAMLPATH $out/lib/ocaml/${ocaml.version}/site-lib:$OCAMLPATH
diff --git a/pkgs/development/tools/ocaml/dune/default.nix b/pkgs/development/tools/ocaml/dune/default.nix
index 6d0754da04d0..62493ee83a6f 100644
--- a/pkgs/development/tools/ocaml/dune/default.nix
+++ b/pkgs/development/tools/ocaml/dune/default.nix
@@ -2,10 +2,10 @@
 
 stdenv.mkDerivation rec {
   name = "dune-${version}";
-  version = "1.4.0";
+  version = "1.5.1";
   src = fetchurl {
     url = "https://github.com/ocaml/dune/releases/download/${version}/dune-${version}.tbz";
-    sha256 = "1fz1jx1d48yb40qan4hw25h8ia55vs7mp94a3rr7cf5gb5ap2zkj";
+    sha256 = "1dbf7wwhr7b41g3p24qb9v5r1vvgrk6i9w8f7y7k5k527xy9jk5w";
   };
 
   buildInputs = with ocamlPackages; [ ocaml findlib ];
@@ -14,10 +14,14 @@ stdenv.mkDerivation rec {
 
   dontAddPrefix = true;
 
-  installPhase = "${opaline}/bin/opaline -prefix $out -libdir $OCAMLFIND_DESTDIR";
+  installPhase = ''
+    runHook preInstall
+    ${opaline}/bin/opaline -prefix $out -libdir $OCAMLFIND_DESTDIR
+    runHook postInstall
+  '';
 
   meta = {
-    homepage = "https://github.com/ocaml/dune";
+    homepage = https://github.com/ocaml/dune;
     description = "A composable build system";
     maintainers = [ stdenv.lib.maintainers.vbgl ];
     license = stdenv.lib.licenses.mit;

From 5e02b5e689a3cd799d4adee5489ddb60c781c18e Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 04:37:30 -0800
Subject: [PATCH 0806/1129] pmd: 6.8.0 -> 6.9.0 (#50015)

* pmd: 6.8.0 -> 6.9.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/pmd/versions
---
 pkgs/development/tools/analysis/pmd/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/tools/analysis/pmd/default.nix b/pkgs/development/tools/analysis/pmd/default.nix
index 89b0a33c0682..3724494da117 100644
--- a/pkgs/development/tools/analysis/pmd/default.nix
+++ b/pkgs/development/tools/analysis/pmd/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "pmd-${version}";
-  version = "6.8.0";
+  version = "6.9.0";
 
   buildInputs = [ unzip ];
 
   src = fetchurl {
     url = "mirror://sourceforge/pmd/pmd-bin-${version}.zip";
-    sha256 = "1vfkg2l3sl5ahhs89nvkg0z1ah1k67c44nwpvaymq73rb2bb8ibr";
+    sha256 = "13w07f68gfcjy3a2zk4z4b0f95qscbkjlylckphmyxhw7vmgzlmn";
   };
 
   installPhase = ''
@@ -17,7 +17,7 @@ stdenv.mkDerivation rec {
   '';
 
   meta = with stdenv.lib; {
-    description = "An extensible cross-language static code analyzer.";
+    description = "An extensible cross-language static code analyzer";
     homepage = https://pmd.github.io/;
     platforms = platforms.unix;
     license = with licenses; [ bsdOriginal asl20 ];

From b6dd810ba479b6dfa4e3deb92b2fce1dbdd517b9 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 04:38:09 -0800
Subject: [PATCH 0807/1129] pdf2djvu: 0.9.10 -> 0.9.11

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/pdf2djvu/versions
---
 pkgs/tools/typesetting/pdf2djvu/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/typesetting/pdf2djvu/default.nix b/pkgs/tools/typesetting/pdf2djvu/default.nix
index 97dd885b7788..fa582d4594cb 100644
--- a/pkgs/tools/typesetting/pdf2djvu/default.nix
+++ b/pkgs/tools/typesetting/pdf2djvu/default.nix
@@ -1,12 +1,12 @@
 { stdenv, fetchurl, pkgconfig, djvulibre, poppler, fontconfig, libjpeg }:
 
 stdenv.mkDerivation rec {
-  version = "0.9.10";
+  version = "0.9.11";
   name = "pdf2djvu-${version}";
 
   src = fetchurl {
     url = "https://github.com/jwilk/pdf2djvu/releases/download/${version}/${name}.tar.xz";
-    sha256 = "026vgg4v6wsq8j091yxg3xzh5953kqg5cyay87y7yidnzn39livn";
+    sha256 = "1hscpm5lsqmiv1niwnq999wmcvj9wlajw8wd3diaaxcq207kvsvd";
   };
 
   nativeBuildInputs = [ pkgconfig ];

From 0045ea5b10edd00f00a5077fb3b0107f5b242e89 Mon Sep 17 00:00:00 2001
From: Maximilian Bosch <maximilian@mbosch.me>
Date: Fri, 9 Nov 2018 14:14:39 +0100
Subject: [PATCH 0808/1129] up: init at 0.3.1

With this tool you can interactively write shell pipes with a previewed
intermediate result.

See https://github.com/akavel/up
---
 pkgs/tools/misc/up/default.nix  | 23 ++++++++++++
 pkgs/tools/misc/up/deps.nix     | 66 +++++++++++++++++++++++++++++++++
 pkgs/top-level/all-packages.nix |  2 +
 3 files changed, 91 insertions(+)
 create mode 100644 pkgs/tools/misc/up/default.nix
 create mode 100644 pkgs/tools/misc/up/deps.nix

diff --git a/pkgs/tools/misc/up/default.nix b/pkgs/tools/misc/up/default.nix
new file mode 100644
index 000000000000..c09c5ad12f08
--- /dev/null
+++ b/pkgs/tools/misc/up/default.nix
@@ -0,0 +1,23 @@
+{ lib, buildGoPackage, fetchFromGitHub }:
+
+buildGoPackage rec {
+  name = "up-${version}";
+  version = "0.3.1";
+
+  src = fetchFromGitHub {
+    owner = "akavel";
+    repo = "up";
+    rev = "v${version}";
+    sha256 = "171bwbk2c7jbi51xdawzv7qy71492mfs9z5j0a5j52qmnr4vjjgs";
+  };
+
+  goPackagePath = "github.com/akavel/up";
+  goDeps = ./deps.nix;
+
+  meta = with lib; {
+    description = "Ultimate Plumber is a tool for writing Linux pipes with instant live preview";
+    homepage = https://github.com/akavel/up;
+    maintainers = with maintainers; [ ma27 ];
+    license = licenses.asl20;
+  };
+}
diff --git a/pkgs/tools/misc/up/deps.nix b/pkgs/tools/misc/up/deps.nix
new file mode 100644
index 000000000000..439dc5df9d4d
--- /dev/null
+++ b/pkgs/tools/misc/up/deps.nix
@@ -0,0 +1,66 @@
+# This file was generated by https://github.com/kamilchm/go2nix v1.2.1
+[
+  {
+    goPackagePath = "github.com/gdamore/encoding";
+    fetch = {
+      type = "git";
+      url = "https://github.com/gdamore/encoding";
+      rev = "b23993cbb6353f0e6aa98d0ee318a34728f628b9";
+      sha256 = "0d7irqpx2fa9vkxgkhf04yiwazsm10fxh0yk86x5crflhph5fv8a";
+    };
+  }
+  {
+    goPackagePath = "github.com/gdamore/tcell";
+    fetch = {
+      type = "git";
+      url = "https://github.com/gdamore/tcell";
+      rev = "017915a4d77dabd7af10ab539e618a735d4b9c0a";
+      sha256 = "19ymkgcvcp9sz2jrfi7h6l720w5yw9hy3wnw975w2ih45j1ypqdh";
+    };
+  }
+  {
+    goPackagePath = "github.com/lucasb-eyer/go-colorful";
+    fetch = {
+      type = "git";
+      url = "https://github.com/lucasb-eyer/go-colorful";
+      rev = "12d3b2882a08d1abc9488e34f3e1ae35165f2d07";
+      sha256 = "1w95axfn1a6rz31xrks77ingr9mdkqyr7mh0glv664kz1wg2h0gw";
+    };
+  }
+  {
+    goPackagePath = "github.com/mattn/go-isatty";
+    fetch = {
+      type = "git";
+      url = "https://github.com/mattn/go-isatty";
+      rev = "3fb116b820352b7f0c281308a4d6250c22d94e27";
+      sha256 = "084hplr4n4g5nvp70clljk428hc963460xz0ggcj3xdi4w7hhsvv";
+    };
+  }
+  {
+    goPackagePath = "github.com/mattn/go-runewidth";
+    fetch = {
+      type = "git";
+      url = "https://github.com/mattn/go-runewidth";
+      rev = "b20a3daf6a39840c202fd42cc23d53607162b045";
+      sha256 = "0crivpncmh22696d5cy7k15ll5yqfjcigk0xy73wb6g1q6vnfxs7";
+    };
+  }
+  {
+    goPackagePath = "github.com/spf13/pflag";
+    fetch = {
+      type = "git";
+      url = "https://github.com/spf13/pflag";
+      rev = "aea12ed6721610dc6ed40141676d7ab0a1dac9e9";
+      sha256 = "17p5k37bnzj6wfh000y7xpvxyv2wsfa3db9sm8da2frjvn7jgbp2";
+    };
+  }
+  {
+    goPackagePath = "golang.org/x/text";
+    fetch = {
+      type = "git";
+      url = "https://go.googlesource.com/text";
+      rev = "6f44c5a2ea40ee3593d98cdcc905cc1fdaa660e2";
+      sha256 = "00mwzxly5isgf0glz7k3k2dkyqkjfc4z55qxajx4lgcp3h8xn9xj";
+    };
+  }
+]
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index f3e400816da6..25064c47004f 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -5884,6 +5884,8 @@ with pkgs;
 
   untrunc = callPackage ../tools/video/untrunc { };
 
+  up = callPackage ../tools/misc/up { };
+
   upx = callPackage ../tools/compression/upx { };
 
   uqmi = callPackage ../tools/networking/uqmi { };

From 7f5bf98bd1f81f1d9e8f2fa9af11bec32d5449eb Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 05:19:44 -0800
Subject: [PATCH 0809/1129] opencpn: 4.8.4 -> 4.8.8

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/opencpn/versions
---
 pkgs/applications/misc/opencpn/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/opencpn/default.nix b/pkgs/applications/misc/opencpn/default.nix
index 7713b5256bfa..295e54518c88 100644
--- a/pkgs/applications/misc/opencpn/default.nix
+++ b/pkgs/applications/misc/opencpn/default.nix
@@ -3,13 +3,13 @@
 
 stdenv.mkDerivation rec {
   name = "opencpn-${version}";
-  version = "4.8.4";
+  version = "4.8.8";
 
   src = fetchFromGitHub {
     owner = "OpenCPN";
     repo = "OpenCPN";
     rev = "v${version}";
-    sha256 = "0v4klprzddmpq7w8h2pm69sgbshirdmjrlzhz62b606gbr58fazf";
+    sha256 = "1z9xfc5fgbdslzak3iqg9nx6wggxwv8qwfxfhvfblkyg6kjw30dg";
   };
 
   nativeBuildInputs = [ pkgconfig ];

From e7be6edb015bf44789bd876fcb26b17d49a82470 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 05:26:55 -0800
Subject: [PATCH 0810/1129] osinfo-db: 20181011 -> 20181101

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/osinfo-db/versions
---
 pkgs/data/misc/osinfo-db/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/data/misc/osinfo-db/default.nix b/pkgs/data/misc/osinfo-db/default.nix
index 94e3218ad35e..b4de04780bd0 100644
--- a/pkgs/data/misc/osinfo-db/default.nix
+++ b/pkgs/data/misc/osinfo-db/default.nix
@@ -1,11 +1,11 @@
 { stdenv, fetchurl, osinfo-db-tools, intltool, libxml2 }:
 
 stdenv.mkDerivation rec {
-  name = "osinfo-db-20181011";
+  name = "osinfo-db-20181101";
 
   src = fetchurl {
     url = "https://releases.pagure.org/libosinfo/${name}.tar.xz";
-    sha256 = "1f0xa50xn15p3zig9031icqky8drf0654sbjmmziw2ijcdyzfkcp";
+    sha256 = "1n9xq5nspfgsdqifh23ypsc85n5xl6cdbwdlacp0sa8rhkmfdvd7";
   };
 
   nativeBuildInputs = [ osinfo-db-tools intltool libxml2 ];

From c9034d2399ecb3a71a023e4890beac5793976441 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?L=C3=A9o=20Gaspard?= <leo@gaspard.io>
Date: Fri, 9 Nov 2018 22:37:09 +0900
Subject: [PATCH 0811/1129] opensmtpd-extras: 5.7.1 -> 6.4.0

Also use `enable*` flags instead of the impossible-to-discover trick of
setting to `null` the dependencies.
---
 pkgs/servers/mail/opensmtpd/extras.nix | 37 +++++++++++++++++---------
 1 file changed, 24 insertions(+), 13 deletions(-)

diff --git a/pkgs/servers/mail/opensmtpd/extras.nix b/pkgs/servers/mail/opensmtpd/extras.nix
index 6b63c317d78f..1d4ad63c37d2 100644
--- a/pkgs/servers/mail/opensmtpd/extras.nix
+++ b/pkgs/servers/mail/opensmtpd/extras.nix
@@ -1,13 +1,21 @@
 { stdenv, fetchurl, openssl, libevent, libasr,
-  python2, pkgconfig, lua5, perl, mysql, postgresql, sqlite, hiredis }:
+  python2, pkgconfig, lua5, perl, mysql, postgresql, sqlite, hiredis,
+  enablePython ? true,
+  enableLua ? true,
+  enablePerl ? true,
+  enableMysql ? true,
+  enablePostgres ? true,
+  enableSqlite ? true,
+  enableRedis ? true,
+}:
 
 stdenv.mkDerivation rec {
   name = "opensmtpd-extras-${version}";
-  version = "5.7.1";
+  version = "6.4.0";
 
   src = fetchurl {
     url = "https://www.opensmtpd.org/archives/${name}.tar.gz";
-    sha256 = "1kld4hxgz792s0cb2gl7m2n618ikzqkj88w5dhaxdrxg4x2c4vdm";
+    sha256 = "09k25l7zy5ch3fk6qphni2h0rxdp8wacmfag1whi608dgimrhrnb";
   };
 
   nativeBuildInputs = [ pkgconfig ];
@@ -40,42 +48,45 @@ stdenv.mkDerivation rec {
     "--with-scheduler-ram"
     "--with-scheduler-stub"
 
-  ] ++ stdenv.lib.optional (python2 != null) [
+  ] ++ stdenv.lib.optional enablePython [
     "--with-python=${python2}"
     "--with-filter-python"
     "--with-queue-python"
     "--with-table-python"
     "--with-scheduler-python"
 
-  ] ++ stdenv.lib.optional (lua5 != null) [
+  ] ++ stdenv.lib.optional enableLua [
     "--with-lua=${pkgconfig}"
     "--with-filter-lua"
 
-  ] ++ stdenv.lib.optional (perl != null) [
+  ] ++ stdenv.lib.optional enablePerl [
     "--with-perl=${perl}"
     "--with-filter-perl"
 
-  ] ++ stdenv.lib.optional (mysql != null) [
+  ] ++ stdenv.lib.optional enableMysql [
     "--with-table-mysql"
 
-  ] ++ stdenv.lib.optional (postgresql != null) [
+  ] ++ stdenv.lib.optional enablePostgres [
     "--with-table-postgres"
 
-  ] ++ stdenv.lib.optional (sqlite != null) [
+  ] ++ stdenv.lib.optional enableSqlite [
     "--with-table-sqlite"
 
-  ] ++ stdenv.lib.optional (hiredis != null) [
+  ] ++ stdenv.lib.optional enableRedis [
     "--with-table-redis"
   ];
 
-  NIX_CFLAGS_COMPILE = stdenv.lib.optional (hiredis != null) "-I${hiredis}/include/hiredis" ++
-    stdenv.lib.optional (mysql != null) "-L${mysql.connector-c}/lib/mysql";
+  NIX_CFLAGS_COMPILE =
+    stdenv.lib.optional enableRedis
+      "-I${hiredis}/include/hiredis -lhiredis"
+    ++ stdenv.lib.optional enableMysql
+      "-L${mysql.connector-c}/lib/mysql";
 
   meta = with stdenv.lib; {
     homepage = https://www.opensmtpd.org/;
     description = "Extra plugins for the OpenSMTPD mail server";
     license = licenses.isc;
     platforms = platforms.linux;
-    maintainers = with maintainers; [ gebner ];
+    maintainers = with maintainers; [ gebner ekleog ];
   };
 }

From 694ff0dc12f78379ba1b93e42d07d454ec2ee5af Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 05:55:08 -0800
Subject: [PATCH 0812/1129] python36Packages.pyotp: 2.2.6 -> 2.2.7 (#49990)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-pyotp/versions
---
 pkgs/development/python-modules/pyotp/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/pyotp/default.nix b/pkgs/development/python-modules/pyotp/default.nix
index 504d12d612e6..05ba24eac396 100644
--- a/pkgs/development/python-modules/pyotp/default.nix
+++ b/pkgs/development/python-modules/pyotp/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "pyotp";
-  version = "2.2.6";
+  version = "2.2.7";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "dd9130dd91a0340d89a0f06f887dbd76dd07fb95a8886dc4bc401239f2eebd69";
+    sha256 = "00p69nw431f0s2ilg0hnd77p1l22m06p9rq4f8zfapmavnmzw3xy";
   };
 
   meta = with lib; {

From cbf91ed2c97f009e3906e410db5d72ab81b5bd54 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 05:56:52 -0800
Subject: [PATCH 0813/1129] nss_wrapper: 1.1.3 -> 1.1.5

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/nss_wrapper/versions
---
 pkgs/development/libraries/nss_wrapper/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/nss_wrapper/default.nix b/pkgs/development/libraries/nss_wrapper/default.nix
index 969e7534eac4..5fc57a2ef671 100644
--- a/pkgs/development/libraries/nss_wrapper/default.nix
+++ b/pkgs/development/libraries/nss_wrapper/default.nix
@@ -1,11 +1,11 @@
 { stdenv, fetchurl, cmake, pkgconfig }:
 
 stdenv.mkDerivation rec {
-  name = "nss_wrapper-1.1.3";
+  name = "nss_wrapper-1.1.5";
 
   src = fetchurl {
     url = "mirror://samba/cwrap/${name}.tar.gz";
-    sha256 = "18rsaw8r8xwn5003arc7xw8iliwbmzxfxgacmp6lhsdwqla4rf69";
+    sha256 = "0srk7hffhkwl811q4pjy0n0gm8rh26akb2bh6avcpbns0zzn9ldn";
   };
 
   nativeBuildInputs = [ pkgconfig ];

From 84810a1ba0c695cc42f2392e4537b3c9582b3430 Mon Sep 17 00:00:00 2001
From: Vincent Weisner <vincentweisner@icloud.com>
Date: Fri, 9 Nov 2018 09:06:31 -0500
Subject: [PATCH 0814/1129] lib/system: Added Embedded Platforms for the CPUs

I added some embedded platforms for the CPUs I added to the parse.nix file.
These could be used as new platforms for the added CPUs.
---
 lib/systems/examples.nix | 15 +++++++++++++++
 1 file changed, 15 insertions(+)

diff --git a/lib/systems/examples.nix b/lib/systems/examples.nix
index a40c38924245..c9c6c5039043 100644
--- a/lib/systems/examples.nix
+++ b/lib/systems/examples.nix
@@ -112,11 +112,26 @@ rec {
     config = "aarch64-none-elf";
     libc = "newlib";
   };
+  
+  aarch64be-embedded = {
+    config = "aarch64_be-none-elf";
+    libc = "newlib";
+  }
 
   ppc-embedded = {
     config = "powerpc-none-eabi";
     libc = "newlib";
   };
+  
+  ppcle-embedded = {
+    config = "powerpcle-none-eabi";
+    libc = "newlib";
+  };
+  
+  alpha-embedded = {
+    config = "alpha-elf";
+    libc = "newlib";
+  }
 
   i686-embedded = {
     config = "i686-elf";

From 791286efd9543d8a37fc2756c30196f89a3726f9 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 06:07:46 -0800
Subject: [PATCH 0815/1129] ngspice: 28 -> 29

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ngspice/versions
---
 pkgs/applications/science/electronics/ngspice/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/science/electronics/ngspice/default.nix b/pkgs/applications/science/electronics/ngspice/default.nix
index 196374706e1f..4777c89e876b 100644
--- a/pkgs/applications/science/electronics/ngspice/default.nix
+++ b/pkgs/applications/science/electronics/ngspice/default.nix
@@ -2,11 +2,11 @@
 , readline, libX11, libICE, libXaw, libXmu, libXext, libXt, fftw }:
 
 stdenv.mkDerivation {
-  name = "ngspice-28";
+  name = "ngspice-29";
 
   src = fetchurl {
-    url = "mirror://sourceforge/ngspice/ngspice-28.tar.gz";
-    sha256 = "0rnz2rdgyav16w7wfn3sfrk2lwvvgz1fh0l9107zkcldijklz04l";
+    url = "mirror://sourceforge/ngspice/ngspice-29.tar.gz";
+    sha256 = "0jjwz73naq7l9yhwdqbpnrfckywp2ffkppivxjv8w92zq7xhyvcd";
   };
 
   nativeBuildInputs = [ flex bison ];

From e7d2ea13e1b0497fd0da87c2e8d34730a022024a Mon Sep 17 00:00:00 2001
From: Vincent Weisner <vincentweisner@icloud.com>
Date: Fri, 9 Nov 2018 09:08:28 -0500
Subject: [PATCH 0816/1129] lib/systems: Added missing semicolons

---
 lib/systems/examples.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/lib/systems/examples.nix b/lib/systems/examples.nix
index c9c6c5039043..acd673df666f 100644
--- a/lib/systems/examples.nix
+++ b/lib/systems/examples.nix
@@ -116,7 +116,7 @@ rec {
   aarch64be-embedded = {
     config = "aarch64_be-none-elf";
     libc = "newlib";
-  }
+  };
 
   ppc-embedded = {
     config = "powerpc-none-eabi";
@@ -131,7 +131,7 @@ rec {
   alpha-embedded = {
     config = "alpha-elf";
     libc = "newlib";
-  }
+  };
 
   i686-embedded = {
     config = "i686-elf";

From b766332d226264431a9e43085a7b6f6451fd4438 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 00:06:42 -0800
Subject: [PATCH 0817/1129] psc-package: 0.4.1 -> 0.4.2

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/psc-package/versions
---
 pkgs/development/compilers/purescript/psc-package/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/compilers/purescript/psc-package/default.nix b/pkgs/development/compilers/purescript/psc-package/default.nix
index dac8b0279ad9..24043ce47740 100644
--- a/pkgs/development/compilers/purescript/psc-package/default.nix
+++ b/pkgs/development/compilers/purescript/psc-package/default.nix
@@ -4,13 +4,13 @@ with lib;
 
 mkDerivation rec {
   pname = "psc-package";
-  version = "0.4.1";
+  version = "0.4.2";
 
   src = fetchFromGitHub {
     owner = "purescript";
     repo = pname;
     rev = "v${version}";
-    sha256 = "1pbgijglyqrm998a6z5ahp4phd72crzr3s8vq17a9dz3i0a9hcj5";
+    sha256 = "0xvnmpfj4c6h4gmc2c3d4gcs44527jrgfl11l2fs4ai1mc69w5zg";
   };
 
   isLibrary = false;

From 6396356da6f4b89e27f77e2d288ce5c76accd8e4 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 06:41:13 -0800
Subject: [PATCH 0818/1129] opencollada: 1.6.65 -> 1.6.66

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/opencollada/versions
---
 pkgs/development/libraries/opencollada/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/opencollada/default.nix b/pkgs/development/libraries/opencollada/default.nix
index b47c9a8e5610..804271202d1c 100644
--- a/pkgs/development/libraries/opencollada/default.nix
+++ b/pkgs/development/libraries/opencollada/default.nix
@@ -4,13 +4,13 @@
 stdenv.mkDerivation rec {
   name = "opencollada-${version}";
 
-  version = "1.6.65";
+  version = "1.6.66";
 
   src = fetchFromGitHub {
     owner = "KhronosGroup";
     repo = "OpenCOLLADA";
     rev = "v${version}";
-    sha256 = "1vxb0b1dqcfwyhb36gjbn0fjdgn3hb03l68jbs0jzx6i2lh8bsh9";
+    sha256 = "0gplw4qa5faphl29ksj9lkzdsnkbgs018n8rz1khhwsqypchygyw";
   };
 
   nativeBuildInputs = [ pkgconfig ];

From cc54b1b8ac51af4c6387e6c1db5573b03b892b52 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 07:14:44 -0800
Subject: [PATCH 0819/1129] ocamlPackages.bos: 0.1.6 -> 0.2.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ocaml4.06.1-bos/versions
---
 pkgs/development/ocaml-modules/bos/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/ocaml-modules/bos/default.nix b/pkgs/development/ocaml-modules/bos/default.nix
index 3cb9b405d5a2..a1f4c6bc5649 100644
--- a/pkgs/development/ocaml-modules/bos/default.nix
+++ b/pkgs/development/ocaml-modules/bos/default.nix
@@ -4,10 +4,10 @@
 
 stdenv.mkDerivation rec {
 	name = "ocaml${ocaml.version}-bos-${version}";
-	version = "0.1.6";
+	version = "0.2.0";
 	src = fetchurl {
 		url = "http://erratique.ch/software/bos/releases/bos-${version}.tbz";
-		sha256 = "1z9sbziqddf770y94pd0bffsp1wdr1v3kp2p00pr27adv7h7dgls";
+		sha256 = "1s10iqx8rgnxr5n93lf4blwirjf8nlm272yg5sipr7lsr35v49wc";
 	};
 
 	unpackCmd = "tar xjf $src";

From 897bce9b8326e4f53abe97a2e2731083f96ddbe4 Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Thu, 8 Nov 2018 15:17:22 -0800
Subject: [PATCH 0820/1129] archiver: init at 3.0.0

---
 pkgs/applications/misc/archiver/default.nix | 28 +++++++++++
 pkgs/applications/misc/archiver/deps.nix    | 56 +++++++++++++++++++++
 pkgs/top-level/all-packages.nix             |  2 +
 3 files changed, 86 insertions(+)
 create mode 100644 pkgs/applications/misc/archiver/default.nix
 create mode 100644 pkgs/applications/misc/archiver/deps.nix

diff --git a/pkgs/applications/misc/archiver/default.nix b/pkgs/applications/misc/archiver/default.nix
new file mode 100644
index 000000000000..25fafb604c33
--- /dev/null
+++ b/pkgs/applications/misc/archiver/default.nix
@@ -0,0 +1,28 @@
+{ buildGoPackage
+, fetchFromGitHub
+, lib
+}:
+
+buildGoPackage rec {
+  name = "archiver-${version}";
+  version = "3.0.0";
+
+  goPackagePath = "github.com/mholt/archiver";
+
+  src = fetchFromGitHub {
+    owner = "mholt";
+    repo = "archiver";
+    rev = "v${version}";
+    sha256 = "1wngv51333h907mp6nbzd9dq6r0x06mag2cij92912jcbzy0q8bk";
+  };
+
+  goDeps = ./deps.nix;
+
+  meta = with lib; {
+    description = "Easily create and extract .zip, .tar, .tar.gz, .tar.bz2, .tar.xz, .tar.lz4, .tar.sz, and .rar (extract-only) files with Go";
+    homepage = https://github.com/mholt/archiver;
+    license = licenses.mit;
+    maintainers = with maintainers; [ kalbasit ];
+    platforms = platforms.all;
+  };
+}
diff --git a/pkgs/applications/misc/archiver/deps.nix b/pkgs/applications/misc/archiver/deps.nix
new file mode 100644
index 000000000000..4b14fd47711b
--- /dev/null
+++ b/pkgs/applications/misc/archiver/deps.nix
@@ -0,0 +1,56 @@
+[
+  {
+    goPackagePath = "github.com/dsnet/compress";
+    fetch = {
+      type = "git";
+      url = "https://github.com/dsnet/compress";
+      rev = "cc9eb1d7ad760af14e8f918698f745e80377af4f";
+      sha256 = "159liclywmyb6zx88ga5gn42hfl4cpk1660zss87fkx31hdq9fgx";
+    };
+  }
+  {
+    goPackagePath = "github.com/golang/snappy";
+    fetch = {
+      type = "git";
+      url = "https://github.com/golang/snappy";
+      rev = "2e65f85255dbc3072edf28d6b5b8efc472979f5a";
+      sha256 = "05w6mpc4qcy0pv8a2bzng8nf4s5rf5phfang4jwy9rgf808q0nxf";
+    };
+  }
+  {
+    goPackagePath = "github.com/nwaples/rardecode";
+    fetch = {
+      type = "git";
+      url = "https://github.com/nwaples/rardecode";
+      rev = "197ef08ef68c4454ae5970a9c2692d6056ceb8d7";
+      sha256 = "0vvijw7va283dbdvnf4bgkn7bjngxqzk1rzdpy8sl343r62bmh4g";
+    };
+  }
+  {
+    goPackagePath = "github.com/pierrec/lz4";
+    fetch = {
+      type = "git";
+      url = "https://github.com/pierrec/lz4";
+      rev = "623b5a2f4d2a41e411730dcdfbfdaeb5c0c4564e";
+      sha256 = "1hhf7vyz5irrqs7ixdmvsvzmy9izv3ha8jbyy0cs486h61nzqkki";
+    };
+  }
+  {
+    goPackagePath = "github.com/ulikunitz/xz";
+    fetch = {
+      type = "git";
+      url = "https://github.com/ulikunitz/xz";
+      rev = "590df8077fbcb06ad62d7714da06c00e5dd2316d";
+      sha256 = "07mivr4aiw3b8qzwajsxyjlpbkf3my4xx23lv0yryc4pciam5lhy";
+    };
+  }
+  {
+    goPackagePath = "github.com/xi2/xz";
+    fetch = {
+      type = "git";
+      url = "https://github.com/xi2/xz";
+      rev = "48954b6210f8d154cb5f8484d3a3e1f83489309e";
+      sha256 = "178r0fa2dpzxf0sabs7dn0c8fa7vs87zlxk6spkn374ls9pir7nq";
+    };
+  }
+]
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index b7a63478fe43..f853e66e2e7f 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -148,6 +148,8 @@ with pkgs;
 
   dieHook = makeSetupHook {} ../build-support/setup-hooks/die.sh;
 
+  archiver = callPackage ../applications/misc/archiver { };
+
   digitalbitbox = libsForQt5.callPackage ../applications/misc/digitalbitbox { };
 
   dockerTools = callPackage ../build-support/docker { };

From 6be46a2b9f8343d4349e8591c35a97e6006dcba8 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 07:25:25 -0800
Subject: [PATCH 0821/1129] openimageio: 1.8.15 -> 1.8.16

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/openimageio/versions
---
 pkgs/applications/graphics/openimageio/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/graphics/openimageio/default.nix b/pkgs/applications/graphics/openimageio/default.nix
index 1980f470435b..f405ca01200d 100644
--- a/pkgs/applications/graphics/openimageio/default.nix
+++ b/pkgs/applications/graphics/openimageio/default.nix
@@ -4,13 +4,13 @@
 
 stdenv.mkDerivation rec {
   name = "openimageio-${version}";
-  version = "1.8.15";
+  version = "1.8.16";
 
   src = fetchFromGitHub {
     owner = "OpenImageIO";
     repo = "oiio";
     rev = "Release-${version}";
-    sha256 = "0fbl5rzmip5q155lfsr07n65dnhww1kw97masps1i1x40gq15czx";
+    sha256 = "0isx137c6anvs1xfxi0z35v1cw855xvnq2ca0pakqqpdh0yivrps";
   };
 
   outputs = [ "bin" "out" "dev" "doc" ];

From 0b69c5210211de2d3d019d1f8fec8d0d742c8419 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 07:32:57 -0800
Subject: [PATCH 0822/1129] now-cli: 11.4.6 -> 11.5.2

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/now-cli/versions
---
 pkgs/development/web/now-cli/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/web/now-cli/default.nix b/pkgs/development/web/now-cli/default.nix
index 911e03daa371..0af669ff0699 100644
--- a/pkgs/development/web/now-cli/default.nix
+++ b/pkgs/development/web/now-cli/default.nix
@@ -1,12 +1,12 @@
 { stdenv, lib, fetchurl }:
 stdenv.mkDerivation rec {
   name = "now-cli-${version}";
-  version = "11.4.6";
+  version = "11.5.2";
 
   # TODO: switch to building from source, if possible
   src = fetchurl {
     url = "https://github.com/zeit/now-cli/releases/download/${version}/now-linux.gz";
-    sha256 = "1bl0yrzxdfy6sks674qlfch8mg3b0x1wj488v83glags8ibsg3cl";
+    sha256 = "1aavhslff2v5ap11s3xxrmdgs4n9yyp74sj3kbw6kwxd4cq1cfxz";
   };
 
   sourceRoot = ".";

From 647d1eb07779cbf288e9607633b76eb7b227525e Mon Sep 17 00:00:00 2001
From: Stephen <stephengroat@users.noreply.github.com>
Date: Fri, 9 Nov 2018 08:40:30 -0800
Subject: [PATCH 0823/1129] terraform-providers: bump versions

---
 .../cluster/terraform-providers/data.nix      | 44 +++++++++----------
 1 file changed, 22 insertions(+), 22 deletions(-)

diff --git a/pkgs/applications/networking/cluster/terraform-providers/data.nix b/pkgs/applications/networking/cluster/terraform-providers/data.nix
index 421fc652a328..4f892a1a8add 100644
--- a/pkgs/applications/networking/cluster/terraform-providers/data.nix
+++ b/pkgs/applications/networking/cluster/terraform-providers/data.nix
@@ -11,8 +11,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-alicloud";
-      version = "1.21.0";
-      sha256  = "17853l2s5z1y2g24wdkapdp26hw0sx5w73y118h0px85fiwhkq79";
+      version = "1.22.0";
+      sha256  = "19qn7q280ppsg7hjlmyagbhgb7qw365mk6c4avs0apvpq6n64rn3";
     };
   archive =
     {
@@ -39,15 +39,15 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-aws";
-      version = "1.42.0";
-      sha256  = "1wi1m7i6vq53p36x1prax4yaz400834024q494zg0ckk4rvngfp6";
+      version = "1.43.0";
+      sha256  = "0d9g95rldlvv6cx0vnhc9h4wpwlrif3xzv5gskz4aif7w9rhn37b";
     };
   azurerm =
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-azurerm";
-      version = "1.17.0";
-      sha256  = "03sjlqkwy0qa382sjwi21g6h2fz1mpsiqcd4naj5zh76fkp8aslw";
+      version = "1.18.0";
+      sha256  = "03vkpk9kl9zvfrprhqqn739klr9gpps5d6zq5r3qa56k588zcg4p";
     };
   azurestack =
     {
@@ -102,8 +102,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-cloudflare";
-      version = "1.7.0";
-      sha256  = "0sqq6miwyh6z86b3wq2bhkaj4x39g2nqq784py8nm8gvs06gcm5a";
+      version = "1.8.0";
+      sha256  = "1hsqxi27mwr96k8yn8f1nxwvs1jaq7nr8plxi7y4lqsv6s7mghjk";
     };
   cloudscale =
     {
@@ -137,8 +137,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-datadog";
-      version = "1.4.0";
-      sha256  = "06ik2k0jkm4200d8njpsidwfjl12ikn5ciqkmlxfwr3b8s1w8kpa";
+      version = "1.5.0";
+      sha256  = "0wr44rqmg0hffgb2g4h03lk4pg9i244c13kyrc3m89b3biwdcydz";
     };
   digitalocean =
     {
@@ -305,8 +305,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-linode";
-      version = "1.1.0";
-      sha256  = "19c269w8jjx04a8rhm4x7bg2xad3y0s74wgis446mwaw7mhla3l3";
+      version = "1.2.0";
+      sha256  = "1wnl48qi8lhrxnrdgnhw7cb7mqv6141g4i648wb7cni5vlqy3i5l";
     };
   local =
     {
@@ -340,8 +340,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-mysql";
-      version = "1.1.0";
-      sha256  = "06alk5vd20wzf493dw8hb80q0sx0kw4j8g1sd0193fhni0k4rflw";
+      version = "1.5.0";
+      sha256  = "1fsqfqz1db1pv8agr5zgqqyhizd7647n6rznf24iwapy1q0wkvmi";
     };
   netlify =
     {
@@ -354,8 +354,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-newrelic";
-      version = "1.1.0";
-      sha256  = "040pxbr4xp0h6s0njdwy0phlkblnk5p3xrcms2gkwyzkqpd82s8b";
+      version = "1.2.0";
+      sha256  = "1dh2i7qps7nr876y54jrjb414vdjhd8c7m1zwdiny93ggvl8f5j2";
     };
   nomad =
     {
@@ -396,8 +396,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-oci";
-      version = "3.5.0";
-      sha256  = "0f4m6rahis1n62w0h0amg8sjs5bb3ifnrfzq1dys7r01k5411wcf";
+      version = "3.6.0";
+      sha256  = "0ilg52j6js6bvw9wng5rbcv2n9kp926x4f2q340qwyyna59r5s5l";
     };
   oneandone =
     {
@@ -424,8 +424,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-opentelekomcloud";
-      version = "1.2.0";
-      sha256  = "05w899l18gmdywfhakjvaxqxxzd9cxga3s932ljfibr0ssipkhh9";
+      version = "1.3.0";
+      sha256  = "07rmav271wgjp1sby88s2ghh8w5hnkdy6rsc8pj69zy332i7n6wk";
     };
   opsgenie =
     {
@@ -620,8 +620,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-vault";
-      version = "1.2.0";
-      sha256  = "1z92dcr5b665l69gxs1hw1rizc5znvf0ck1lksphd301l2ywk97b";
+      version = "1.3.1";
+      sha256  = "1rhwq45g6jggmxf953w5lckqzngdr15g5ncwwl2mjhz2xakn44lh";
     };
   vcd =
     {

From d52de90dba64a8a7132721a7b242f94c6fa2ee54 Mon Sep 17 00:00:00 2001
From: Moritz Kiefer <moritz.kiefer@purelyfunctional.org>
Date: Sun, 4 Nov 2018 11:22:56 +0100
Subject: [PATCH 0824/1129] yacreader: init at 9.5.0, libunarr: init at 1.0.1

---
 .../graphics/yacreader/default.nix            | 25 +++++++++++++++++++
 .../libraries/libunarr/default.nix            | 21 ++++++++++++++++
 pkgs/top-level/all-packages.nix               |  4 +++
 3 files changed, 50 insertions(+)
 create mode 100644 pkgs/applications/graphics/yacreader/default.nix
 create mode 100644 pkgs/development/libraries/libunarr/default.nix

diff --git a/pkgs/applications/graphics/yacreader/default.nix b/pkgs/applications/graphics/yacreader/default.nix
new file mode 100644
index 000000000000..3cf42343658c
--- /dev/null
+++ b/pkgs/applications/graphics/yacreader/default.nix
@@ -0,0 +1,25 @@
+{ stdenv, fetchurl, qmake, poppler, pkgconfig, libunarr, libGLU
+, qtdeclarative, qtgraphicaleffects, qtmultimedia, qtquickcontrols, qtscript
+}:
+
+stdenv.mkDerivation rec {
+  name = "yacreader-${version}";
+  version = "9.5.0";
+
+  src = fetchurl {
+    url = "https://github.com/YACReader/yacreader/releases/download/${version}/${name}-src.tar.xz";
+    sha256 = "0cv5y76kjvsqsv4fp99j8np5pm4m76868i1nn40q6hy573dmxwm6";
+  };
+
+  nativeBuildInputs = [ qmake pkgconfig ];
+  buildInputs = [ poppler libunarr libGLU qtmultimedia qtscript ];
+  propagatedBuildInputs = [ qtquickcontrols qtgraphicaleffects qtdeclarative ];
+
+  enableParallelBuilding = true;
+
+  meta = {
+    description = "A comic reader for cross-platform reading and managing your digital comic collection";
+    homepage = http://www.yacreader.com;
+    license = stdenv.lib.licenses.gpl3;
+  };
+}
diff --git a/pkgs/development/libraries/libunarr/default.nix b/pkgs/development/libraries/libunarr/default.nix
new file mode 100644
index 000000000000..e21f9400848d
--- /dev/null
+++ b/pkgs/development/libraries/libunarr/default.nix
@@ -0,0 +1,21 @@
+{ stdenv, fetchurl, cmake }:
+
+stdenv.mkDerivation rec {
+  name = "libunarr-${version}";
+  version = "1.0.1";
+
+  src = fetchurl {
+    url = "https://github.com/selmf/unarr/releases/download/v${version}/unarr-${version}.tar.xz";
+    sha256 = "1db500k6w90qn6qb4j3zcczailmmv81q9lv4bwq516hbncg5p4sl";
+  };
+
+  nativeBuildInputs = [ cmake ];
+
+  enableParallelBuilding = true;
+
+  meta = with stdenv.lib; {
+    homepage = https://github.com/selmf/unarr;
+    description = "A lightweight decompression library with support for rar, tar and zip archives";
+    license = licenses.lgpl3;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 9917acbbf10e..ab9282ff9e9c 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -11138,6 +11138,8 @@ with pkgs;
   giflib_4_1 = callPackage ../development/libraries/giflib/4.1.nix { };
   giflib_5_1 = callPackage ../development/libraries/giflib/5.1.nix { };
 
+  libunarr = callPackage ../development/libraries/libunarr { };
+
   libungif = callPackage ../development/libraries/giflib/libungif.nix { };
 
   libunibreak = callPackage ../development/libraries/libunibreak { };
@@ -22647,6 +22649,8 @@ with pkgs;
     openal = null;
   };
 
+  yacreader = libsForQt5.callPackage ../applications/graphics/yacreader { };
+
   yadm = callPackage ../applications/version-management/yadm { };
 
   yamdi = callPackage ../tools/video/yamdi { };

From 7e607a7a876711692874301aef618fa38344c722 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 08:54:10 -0800
Subject: [PATCH 0825/1129] mercurialFull: 4.7.2 -> 4.8

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/mercurial-full/versions
---
 pkgs/applications/version-management/mercurial/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/version-management/mercurial/default.nix b/pkgs/applications/version-management/mercurial/default.nix
index 5464f605cbdb..35d374866c8a 100644
--- a/pkgs/applications/version-management/mercurial/default.nix
+++ b/pkgs/applications/version-management/mercurial/default.nix
@@ -4,7 +4,7 @@
 
 let
   # if you bump version, update pkgs.tortoisehg too or ping maintainer
-  version = "4.7.2";
+  version = "4.8";
   name = "mercurial-${version}";
   inherit (python2Packages) docutils hg-git dulwich python;
 in python2Packages.buildPythonApplication {
@@ -13,7 +13,7 @@ in python2Packages.buildPythonApplication {
 
   src = fetchurl {
     url = "https://mercurial-scm.org/release/${name}.tar.gz";
-    sha256 = "1yq9r8s9jzj8hk2yizjk25s4w16yx9b8mbdj6wp8ld7j2r15kw4p";
+    sha256 = "00rzjbf2blxkc0qwd9mdzx5fnzgpp4jxzijq6wgsjgmqscx40sy5";
   };
 
   inherit python; # pass it so that the same version can be used in hg2git

From d45590b839f53f64183ca3bdf2e7474c73388499 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <Mic92@users.noreply.github.com>
Date: Fri, 9 Nov 2018 09:41:49 +0000
Subject: [PATCH 0826/1129] metasploit-framework: fix build

> /nix/store/r2vsi140pys7jnzyk0qz1fj9aji6sq40-ruby2.5.3-rb-readline-0.5.5/lib/ruby/gems/2.5.0/gems/rb-readline-0.5.5/lib/rbreadline.rb:1097:in `<module:RbReadline>': HOME environment variable (or HOMEDRIVE and HOMEPATH) must be set and point to a directory (RuntimeError)
---
 pkgs/development/ruby-modules/gem-config/default.nix | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/pkgs/development/ruby-modules/gem-config/default.nix b/pkgs/development/ruby-modules/gem-config/default.nix
index b5aa0933c2e8..e7d1156acffa 100644
--- a/pkgs/development/ruby-modules/gem-config/default.nix
+++ b/pkgs/development/ruby-modules/gem-config/default.nix
@@ -226,6 +226,12 @@ in
     '';
   };
 
+  metasploit-framework = attrs: {
+    preInstall = ''
+      export HOME=$TMPDIR
+    '';
+  };
+
   msgpack = attrs: {
     buildInputs = [ msgpack ];
   };

From 23e5b69fc10449deea0904702da56e85f3de64c9 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 10:04:53 -0800
Subject: [PATCH 0827/1129] multimon-ng: 1.1.5 -> 1.1.6

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/multimon-ng/versions
---
 pkgs/applications/misc/multimon-ng/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/multimon-ng/default.nix b/pkgs/applications/misc/multimon-ng/default.nix
index 99d511d413c0..3fb268017750 100644
--- a/pkgs/applications/misc/multimon-ng/default.nix
+++ b/pkgs/applications/misc/multimon-ng/default.nix
@@ -1,6 +1,6 @@
 { stdenv, fetchFromGitHub, qt4, qmake4Hook, libpulseaudio }:
 let
-  version = "1.1.5";
+  version = "1.1.6";
 in
 stdenv.mkDerivation {
   name = "multimon-ng-${version}";
@@ -9,7 +9,7 @@ stdenv.mkDerivation {
     owner = "EliasOenal";
     repo = "multimon-ng";
     rev = "${version}";
-    sha256 = "00h884hn5afrx5i52xmngpsv3204hgb7xpw9my3lm8sajmfrjj1g";
+    sha256 = "1a166mh73x77yrrnhhhzk44qrkgwav26vpidv1547zj3x3m8p0bm";
   };
 
   buildInputs = [ qt4 libpulseaudio ];

From 4c9729ab53873edb4f3ef3ce6067c256f73ab14f Mon Sep 17 00:00:00 2001
From: Orivej Desh <orivej@gmx.fr>
Date: Fri, 9 Nov 2018 18:28:19 +0000
Subject: [PATCH 0828/1129] psi-plus: 1.3.422 -> 1.4.404

---
 .../networking/instant-messengers/psi-plus/default.nix    | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/networking/instant-messengers/psi-plus/default.nix b/pkgs/applications/networking/instant-messengers/psi-plus/default.nix
index 64e3c822108f..d01019a56197 100644
--- a/pkgs/applications/networking/instant-messengers/psi-plus/default.nix
+++ b/pkgs/applications/networking/instant-messengers/psi-plus/default.nix
@@ -5,20 +5,20 @@
 
 stdenv.mkDerivation rec {
   name = "psi-plus-${version}";
-  version = "1.3.422";
+  version = "1.4.404";
 
   src = fetchFromGitHub {
     owner = "psi-plus";
     repo = "psi-plus-snapshots";
     rev = "${version}";
-    sha256 = "193n3yvhp9m14irb49kg2rc4h7ypdmvidrgvv1i2n373iq751z05";
+    sha256 = "05dcr1i7ic6nff70w4zfpdcmwf19kkhgxm7mcznmlr484d5i1v2m";
   };
 
   resources = fetchFromGitHub {
     owner = "psi-plus";
     repo = "resources";
-    rev = "c0bfb8a025eeec82cd0a23a559e0aa3da15c3ec3";
-    sha256 = "1q7v01w085vk7ml6gwis7j409w6f5cplpm7c0ajs4i93c4j53xdf";
+    rev = "d623f57db35eb5af81ccdf69b2cbe1c437190f29";
+    sha256 = "024cyazyxka5vcbjrkkw32c5zw6aa70n50fdp6zh5v5c51d9ci8k";
   };
 
   postUnpack = ''

From c19c051123301da24b6485314a61ab149913eb5c Mon Sep 17 00:00:00 2001
From: Stephen <stephengroat@users.noreply.github.com>
Date: Fri, 9 Nov 2018 10:37:24 -0800
Subject: [PATCH 0829/1129] slack: 3.2.1 -> 3.3.3

closes #50009
---
 .../networking/instant-messengers/slack/default.nix           | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/instant-messengers/slack/default.nix b/pkgs/applications/networking/instant-messengers/slack/default.nix
index af2030a20b8a..529a530a4a36 100644
--- a/pkgs/applications/networking/instant-messengers/slack/default.nix
+++ b/pkgs/applications/networking/instant-messengers/slack/default.nix
@@ -5,7 +5,7 @@
 
 let
 
-  version = "3.2.1";
+  version = "3.3.3";
 
   rpath = stdenv.lib.makeLibraryPath [
     alsaLib
@@ -47,7 +47,7 @@ let
     if stdenv.hostPlatform.system == "x86_64-linux" then
       fetchurl {
         url = "https://downloads.slack-edge.com/linux_releases/slack-desktop-${version}-amd64.deb";
-        sha256 = "095dpkwvvnwlxsglyg6wi9126wpalzi736b6g6j3bd6d93z9afah";
+        sha256 = "01x4anbm62y49zfkyfvxih5rk8g2qi32ppb8j2a5pwssyw4wqbfi";
       }
     else
       throw "Slack is not supported on ${stdenv.hostPlatform.system}";

From 1f6d946e656fdc1fe83df4113b95a7ed8e6cb0ff Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 10:40:25 -0800
Subject: [PATCH 0830/1129] memcached: 1.5.11 -> 1.5.12

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/memcached/versions
---
 pkgs/servers/memcached/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/memcached/default.nix b/pkgs/servers/memcached/default.nix
index dc66c710a5d4..f35b8ff01884 100644
--- a/pkgs/servers/memcached/default.nix
+++ b/pkgs/servers/memcached/default.nix
@@ -1,12 +1,12 @@
 {stdenv, fetchurl, cyrus_sasl, libevent}:
 
 stdenv.mkDerivation rec {
-  version = "1.5.11";
+  version = "1.5.12";
   name = "memcached-${version}";
 
   src = fetchurl {
     url = "https://memcached.org/files/${name}.tar.gz";
-    sha256 = "0ajql8qs3w1lpw41vxkq2xabkxmmdk2nwg3i4lkclraq8pw92yk9";
+    sha256 = "0aav15f0lh8k4i62aza2bdv4s8vv65j38pz2zc4v45snd3arfby0";
   };
 
   buildInputs = [cyrus_sasl libevent];

From 4a58f744f17d6a63fc8437c9d1ee83e22d6eb928 Mon Sep 17 00:00:00 2001
From: Samuel Dionne-Riel <samuel@dionne-riel.com>
Date: Fri, 9 Nov 2018 13:52:26 -0500
Subject: [PATCH 0831/1129] libreoffice-*: inherits meta.

This ensures the package listing shows the expected informations.
---
 pkgs/applications/office/libreoffice/wrapper.nix | 5 ++++-
 1 file changed, 4 insertions(+), 1 deletion(-)

diff --git a/pkgs/applications/office/libreoffice/wrapper.nix b/pkgs/applications/office/libreoffice/wrapper.nix
index 8566bd76e1e2..ce8910d76d45 100644
--- a/pkgs/applications/office/libreoffice/wrapper.nix
+++ b/pkgs/applications/office/libreoffice/wrapper.nix
@@ -13,4 +13,7 @@ in
   for i in $(ls "${libreoffice}/bin/"); do
     test "$i" = "soffice" || ln -s soffice "$out/bin/$(basename "$i")"
   done
-'') // { inherit libreoffice dbus; }
+'') // {
+  inherit libreoffice dbus;
+  meta = libreoffice.meta;
+}

From 6903dc531449e5c188167014b2221f1cf534aec4 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 10:59:21 -0800
Subject: [PATCH 0832/1129] mlterm: 3.8.6 -> 3.8.7

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/mlterm/versions
---
 pkgs/applications/misc/mlterm/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/mlterm/default.nix b/pkgs/applications/misc/mlterm/default.nix
index 31793031dc1f..c872af68cef7 100644
--- a/pkgs/applications/misc/mlterm/default.nix
+++ b/pkgs/applications/misc/mlterm/default.nix
@@ -7,11 +7,11 @@
 
 stdenv.mkDerivation rec {
   name = "mlterm-${version}";
-  version = "3.8.6";
+  version = "3.8.7";
 
   src = fetchurl {
     url = "mirror://sourceforge/project/mlterm/01release/${name}/${name}.tar.gz";
-    sha256 = "06zylbinh84s9v79hrlvv44rd57z7kvgz9afbps3rjcbncxcmivd";
+    sha256 = "10j7q7rk6ck86xl1898maxhgkp1h7vy7nliv9sk5bqgs7rdwn4kl";
   };
 
   nativeBuildInputs = [ pkgconfig autoconf ];

From 1430f1c0d0d509465c587efca6435a2af4d9de7d Mon Sep 17 00:00:00 2001
From: Samuel Dionne-Riel <samuel@dionne-riel.com>
Date: Fri, 9 Nov 2018 13:53:37 -0500
Subject: [PATCH 0833/1129] libreoffice-*: changes attributes structure for
 *-unwrapped

libreoffice-unwrapped points to the same libreoffice than libreoffice.
libreoffice-*-unwrapped exists for all versions

This bring an incompatible change where a user using
`libreoffice-unwrapped` hoping to use `fresh` would now be inadvertently
be using `still`.
---
 pkgs/top-level/all-packages.nix | 20 ++++++++++----------
 1 file changed, 10 insertions(+), 10 deletions(-)

diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 9e9ee8797ff1..c27f0e036f59 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -17652,6 +17652,7 @@ with pkgs;
   librecad = callPackage ../applications/misc/librecad { };
 
   libreoffice = hiPrio libreoffice-still;
+  libreoffice-unwrapped = libreoffice.libreoffice;
 
   libreoffice-args = {
     inherit (perlPackages) ArchiveZip IOCompress;
@@ -17673,21 +17674,20 @@ with pkgs;
     };
   };
 
-  libreoffice-unwrapped = callPackage ../applications/office/libreoffice
-  (libreoffice-args // {
-  });
-  libreoffice-still-unwrapped = callPackage ../applications/office/libreoffice/still.nix
-  (libreoffice-args // {
-      poppler = poppler_0_61;
-  });
-
   libreoffice-fresh = lowPrio (callPackage ../applications/office/libreoffice/wrapper.nix {
-    libreoffice = libreoffice-unwrapped;
+    libreoffice = callPackage ../applications/office/libreoffice
+      (libreoffice-args // {
+      });
   });
+  libreoffice-fresh-unwrapped = libreoffice-fresh.libreoffice;
 
   libreoffice-still = lowPrio (callPackage ../applications/office/libreoffice/wrapper.nix {
-    libreoffice = libreoffice-still-unwrapped;
+    libreoffice = callPackage ../applications/office/libreoffice/still.nix
+      (libreoffice-args // {
+          poppler = poppler_0_61;
+      });
   });
+  libreoffice-still-unwrapped = libreoffice-still.libreoffice;
 
   libvmi = callPackage ../development/libraries/libvmi { };
 

From 74e7bce5c1d22eb8b34ae5256b9af5c883479f09 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 11:15:49 -0800
Subject: [PATCH 0834/1129] libdwarf: 20180809 -> 20181024

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/libdwarf/versions
---
 pkgs/development/libraries/libdwarf/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/libraries/libdwarf/default.nix b/pkgs/development/libraries/libdwarf/default.nix
index 649541e22627..edd84d5a9515 100644
--- a/pkgs/development/libraries/libdwarf/default.nix
+++ b/pkgs/development/libraries/libdwarf/default.nix
@@ -1,7 +1,7 @@
 { stdenv, fetchurl, libelf }:
 
 let
-  version = "20180809";
+  version = "20181024";
   src = fetchurl {
     url = "https://www.prevanders.net/libdwarf-${version}.tar.gz";
     # Upstream displays this hash broken into three parts:

From 205960e1d134e83ad1edff0addd6d3fa868e327c Mon Sep 17 00:00:00 2001
From: "Wael M. Nasreddine" <wael.nasreddine@gmail.com>
Date: Fri, 9 Nov 2018 11:27:39 -0800
Subject: [PATCH 0835/1129] trim trailing whitespace from
 top-level/all-packages

---
 pkgs/top-level/all-packages.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 9373b71b3ba3..d11a90b14d71 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -19025,7 +19025,7 @@ with pkgs;
 
   lightdm-mini-greeter = callPackage ../applications/display-managers/lightdm-mini-greeter { };
 
-  ly = callPackage ../applications/display-managers/ly { }; 
+  ly = callPackage ../applications/display-managers/ly { };
 
   slic3r = callPackage ../applications/misc/slic3r { };
 

From 8c13a376047d9b19a2ee2738c0963318ac5b135e Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 11:34:22 -0800
Subject: [PATCH 0836/1129] krop: 0.5.0 -> 0.5.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/krop/versions
---
 pkgs/applications/graphics/krop/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/graphics/krop/default.nix b/pkgs/applications/graphics/krop/default.nix
index 2858086e0d64..c4c889cdba52 100644
--- a/pkgs/applications/graphics/krop/default.nix
+++ b/pkgs/applications/graphics/krop/default.nix
@@ -2,13 +2,13 @@
 
 python3Packages.buildPythonApplication rec {
   pname = "krop";
-  version = "0.5.0";
+  version = "0.5.1";
 
   src = fetchFromGitHub {
     owner = "arminstraub";
     repo = pname;
     rev = "v${version}";
-    sha256 = "0y8z9xr10wbzmi1dg1zpcsf3ihnxrnvlaf72821x3390s3qsnydf";
+    sha256 = "0b1zqpks4vzq7sfhf7r9qrshr77f1ncj18x7d0fa3g29rxa42dcr";
   };
 
   propagatedBuildInputs = with python3Packages; [

From 2e2afa1943a69cef6abb96a8552ddafd06f9bbd4 Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Thu, 8 Nov 2018 15:34:40 -0600
Subject: [PATCH 0837/1129] gcc/binutils: disable pie hardening
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

These don’t like having -fPIE set for them. We should disable
hardening all the time, but in the interest of not changing hashes,
this only disables it for Musl (where it is now the default).

(cherry picked from commit a3a6884649354a660326acd68c1bd08ffd2dcfa2)
---
 pkgs/development/compilers/gcc/4.8/default.nix   | 2 +-
 pkgs/development/compilers/gcc/4.9/default.nix   | 2 +-
 pkgs/development/compilers/gcc/5/default.nix     | 2 +-
 pkgs/development/compilers/gcc/6/default.nix     | 2 +-
 pkgs/development/compilers/gcc/7/default.nix     | 2 +-
 pkgs/development/compilers/gcc/8/default.nix     | 2 +-
 pkgs/development/tools/misc/binutils/default.nix | 2 +-
 7 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/pkgs/development/compilers/gcc/4.8/default.nix b/pkgs/development/compilers/gcc/4.8/default.nix
index e585f296e877..e40994a078e3 100644
--- a/pkgs/development/compilers/gcc/4.8/default.nix
+++ b/pkgs/development/compilers/gcc/4.8/default.nix
@@ -180,7 +180,7 @@ stdenv.mkDerivation ({
 
   inherit patches;
 
-  hardeningDisable = [ "format" ];
+  hardeningDisable = [ "format" ] ++ stdenv.lib.optional stdenv.targetPlatform.isMusl "pie";
 
   outputs = [ "out" "lib" "man" "info" ];
   setOutputFlags = false;
diff --git a/pkgs/development/compilers/gcc/4.9/default.nix b/pkgs/development/compilers/gcc/4.9/default.nix
index 9dae061ecbb3..bd5257b94a09 100644
--- a/pkgs/development/compilers/gcc/4.9/default.nix
+++ b/pkgs/development/compilers/gcc/4.9/default.nix
@@ -188,7 +188,7 @@ stdenv.mkDerivation ({
 
   inherit patches;
 
-  hardeningDisable = [ "format" ];
+  hardeningDisable = [ "format" ] ++ stdenv.lib.optional stdenv.targetPlatform.isMusl "pie";
 
   outputs = if langJava || langGo then ["out" "man" "info"]
     else [ "out" "lib" "man" "info" ];
diff --git a/pkgs/development/compilers/gcc/5/default.nix b/pkgs/development/compilers/gcc/5/default.nix
index fbc192752c72..85b3d96e1368 100644
--- a/pkgs/development/compilers/gcc/5/default.nix
+++ b/pkgs/development/compilers/gcc/5/default.nix
@@ -181,7 +181,7 @@ stdenv.mkDerivation ({
 
   libc_dev = stdenv.cc.libc_dev;
 
-  hardeningDisable = [ "format" ];
+  hardeningDisable = [ "format" ] ++ stdenv.lib.optional stdenv.targetPlatform.isMusl "pie";
 
   # This should kill all the stdinc frameworks that gcc and friends like to
   # insert into default search paths.
diff --git a/pkgs/development/compilers/gcc/6/default.nix b/pkgs/development/compilers/gcc/6/default.nix
index 793752dee19e..98e24900b01f 100644
--- a/pkgs/development/compilers/gcc/6/default.nix
+++ b/pkgs/development/compilers/gcc/6/default.nix
@@ -182,7 +182,7 @@ stdenv.mkDerivation ({
 
   libc_dev = stdenv.cc.libc_dev;
 
-  hardeningDisable = [ "format" ];
+  hardeningDisable = [ "format" ] ++ stdenv.lib.optional stdenv.targetPlatform.isMusl "pie";
 
   # This should kill all the stdinc frameworks that gcc and friends like to
   # insert into default search paths.
diff --git a/pkgs/development/compilers/gcc/7/default.nix b/pkgs/development/compilers/gcc/7/default.nix
index c75a6c6e68f8..064d9eb6bc7b 100644
--- a/pkgs/development/compilers/gcc/7/default.nix
+++ b/pkgs/development/compilers/gcc/7/default.nix
@@ -151,7 +151,7 @@ stdenv.mkDerivation ({
 
   libc_dev = stdenv.cc.libc_dev;
 
-  hardeningDisable = [ "format" ];
+  hardeningDisable = [ "format" ] ++ stdenv.lib.optional stdenv.targetPlatform.isMusl "pie";
 
   # This should kill all the stdinc frameworks that gcc and friends like to
   # insert into default search paths.
diff --git a/pkgs/development/compilers/gcc/8/default.nix b/pkgs/development/compilers/gcc/8/default.nix
index bcac577712aa..c6fea70cfbb7 100644
--- a/pkgs/development/compilers/gcc/8/default.nix
+++ b/pkgs/development/compilers/gcc/8/default.nix
@@ -145,7 +145,7 @@ stdenv.mkDerivation ({
 
   libc_dev = stdenv.cc.libc_dev;
 
-  hardeningDisable = [ "format" ];
+  hardeningDisable = [ "format" ] ++ stdenv.lib.optional stdenv.targetPlatform.isMusl "pie";
 
   # This should kill all the stdinc frameworks that gcc and friends like to
   # insert into default search paths.
diff --git a/pkgs/development/tools/misc/binutils/default.nix b/pkgs/development/tools/misc/binutils/default.nix
index 3205366f80eb..54f9b5e4031f 100644
--- a/pkgs/development/tools/misc/binutils/default.nix
+++ b/pkgs/development/tools/misc/binutils/default.nix
@@ -97,7 +97,7 @@ stdenv.mkDerivation rec {
     then "-Wno-string-plus-int -Wno-deprecated-declarations"
     else "-static-libgcc";
 
-  hardeningDisable = [ "format" ];
+  hardeningDisable = [ "format" ] ++ stdenv.lib.optional stdenv.targetPlatform.isMusl "pie";
 
   # TODO(@Ericson2314): Always pass "--target" and always targetPrefix.
   configurePlatforms = [ "build" "host" ] ++ stdenv.lib.optional (stdenv.targetPlatform != stdenv.hostPlatform) "target";

From 28c4e861f2c010ef667d54faea52fe9470fa5fd9 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 11:57:34 -0800
Subject: [PATCH 0838/1129] libinput-gestures: 2.38 -> 2.39

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/libinput-gestures/versions
---
 pkgs/tools/inputmethods/libinput-gestures/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/inputmethods/libinput-gestures/default.nix b/pkgs/tools/inputmethods/libinput-gestures/default.nix
index 77eae2c55e1d..75670dfe9dfb 100644
--- a/pkgs/tools/inputmethods/libinput-gestures/default.nix
+++ b/pkgs/tools/inputmethods/libinput-gestures/default.nix
@@ -5,14 +5,14 @@
 }:
 stdenv.mkDerivation rec {
   pname = "libinput-gestures";
-  version = "2.38";
+  version = "2.39";
   name = "${pname}-${version}";
 
   src = fetchFromGitHub {
     owner = "bulletmark";
     repo = "libinput-gestures";
     rev = version;
-    sha256 = "1nxvlifag04v56grdwxc3l92kmf51c4w2lq42a3w76yc6p4nxw1m";
+    sha256 = "0bzyi55yhr9wyar9mnd09cr6pi88jkkp0f9lndm0a9jwi1xr4bdf";
   };
   patches = [
     ./0001-hardcode-name.patch

From c72f48f719196ee0fbc28a0b4aa58796d6902c9b Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Fri, 9 Nov 2018 15:07:00 -0500
Subject: [PATCH 0839/1129] bamf: 2018-02-07 -> 0.5.4

---
 pkgs/development/libraries/bamf/default.nix | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/libraries/bamf/default.nix b/pkgs/development/libraries/bamf/default.nix
index 3fcdbca34f5f..b2c7bf5d6449 100644
--- a/pkgs/development/libraries/bamf/default.nix
+++ b/pkgs/development/libraries/bamf/default.nix
@@ -3,14 +3,15 @@
 , xorgserver, dbus, python2 }:
 
 stdenv.mkDerivation rec {
-  name = "bamf-2018-02-07";
+  name = "bamf-${version}";
+  version = "0.5.4";
 
   outputs = [ "out" "dev" "devdoc" ];
 
   src = fetchgit {
     url = https://git.launchpad.net/~unity-team/bamf;
-    rev = "0.5.3+18.04.20180207.2-0ubuntu1";
-    sha256 = "0hvbgzi0mzzzvcamd9mi1ykbk2l6zxffspyk5fpik8bij56nhzym";
+    rev = version;
+    sha256 = "1klvij1wyhdj5d8sr3b16pfixc1yk8ihglpjykg7zrr1f50jfgsz";
   };
 
   nativeBuildInputs = [

From 3864d58e3942509764caab5c28d1a4fba0418930 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 12:11:41 -0800
Subject: [PATCH 0840/1129] liblognorm: 2.0.5 -> 2.0.6

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/liblognorm/versions
---
 pkgs/development/libraries/liblognorm/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/liblognorm/default.nix b/pkgs/development/libraries/liblognorm/default.nix
index a21b65170d39..60a38915630e 100644
--- a/pkgs/development/libraries/liblognorm/default.nix
+++ b/pkgs/development/libraries/liblognorm/default.nix
@@ -1,11 +1,11 @@
 { stdenv, fetchurl, pkgconfig, libestr, json_c, pcre, fastJson }:
 
 stdenv.mkDerivation rec {
-  name = "liblognorm-2.0.5";
+  name = "liblognorm-2.0.6";
 
   src = fetchurl {
     url = "http://www.liblognorm.com/files/download/${name}.tar.gz";
-    sha256 = "145i1lrl2n145189i7l2a62yazjg9rkyma5jic41y0r17fl1s5f8";
+    sha256 = "1wpn15c617r7lfm1z9d5aggmmi339s6yn4pdz698j0r2bkl5gw6g";
   };
 
   nativeBuildInputs = [ pkgconfig ];

From db8f4ff49c35828f9d39f55ef9de9a7ac7dbf27e Mon Sep 17 00:00:00 2001
From: MGregoire <gregoire@martinache.net>
Date: Sun, 28 Oct 2018 22:31:18 +0100
Subject: [PATCH 0841/1129] standardnotes: init at 2.3.12

---
 maintainers/maintainer-list.nix               |  5 ++
 .../editors/standardnotes/default.nix         | 48 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 +
 3 files changed, 55 insertions(+)
 create mode 100644 pkgs/applications/editors/standardnotes/default.nix

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index 225370288b4d..c73cda5ea1cf 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -2695,6 +2695,11 @@
     github = "mgdelacroix";
     name = "Miguel de la Cruz";
   };
+  mgregoire = {
+    email = "gregoire@martinache.net";
+    github = "M-Gregoire";
+    name = "Gregoire Martinache";
+  };
   mgttlinger = {
     email = "megoettlinger@gmail.com";
     github = "mgttlinger";
diff --git a/pkgs/applications/editors/standardnotes/default.nix b/pkgs/applications/editors/standardnotes/default.nix
new file mode 100644
index 000000000000..d9bca5309489
--- /dev/null
+++ b/pkgs/applications/editors/standardnotes/default.nix
@@ -0,0 +1,48 @@
+{ stdenv, appimage-run, fetchurl }:
+
+let
+  version = "2.3.12";
+
+  plat = {
+    "i386-linux" = "i386";
+    "x86_64-linux" = "x86_64";
+  }.${stdenv.hostPlatform.system};
+
+  sha256 = {
+    "i386-linux" = "0q7izk20r14kxn3n4pn92jgnynfnlnylg55brz8n1lqxc0dc3v24";
+    "x86_64-linux" = "0myg4qv0vrwh8s9sckb12ld9f86ymx4yypvpy0w5qn1bxk5hbafc";
+  }.${stdenv.hostPlatform.system};
+in
+
+stdenv.mkDerivation rec {
+  name = "standardnotes-${version}";
+
+  src = fetchurl {
+    url = "https://github.com/standardnotes/desktop/releases/download/v${version}/standard-notes-${version}-${plat}.AppImage";
+    inherit sha256;
+  };
+
+  buildInputs = [ appimage-run ];
+
+  unpackPhase = ":";
+
+  installPhase = ''
+    mkdir -p $out/{bin,share}
+    cp $src $out/share/standardNotes.AppImage
+    echo "#!/bin/sh" > $out/bin/standardnotes
+    echo "${appimage-run}/bin/appimage-run $out/share/standardNotes.AppImage" >> $out/bin/standardnotes
+    chmod +x $out/bin/standardnotes $out/share/standardNotes.AppImage
+  '';
+
+  meta = with stdenv.lib; {
+    description = "A simple and private notes app";
+    longDescription = ''
+      Standard Notes is a private notes app that features unmatched simplicity,
+      end-to-end encryption, powerful extensions, and open-source applications.
+    '';
+    homepage = https://standardnotes.org;
+    license = licenses.agpl3;
+    maintainers = with maintainers; [ mgregoire ];
+    platforms = [ "i386-linux" "x86_64-linux" ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index b4aeab6c0e3c..f046f1b8ba0e 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -12421,6 +12421,8 @@ with pkgs;
     ncurses = null;
   });
 
+  standardnotes = callPackage ../applications/editors/standardnotes { };
+
   stfl = callPackage ../development/libraries/stfl { };
 
   stlink = callPackage ../development/tools/misc/stlink { };

From ef289b583e5d8d47ba3e963d11a41649e94c23e9 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 12:53:47 -0800
Subject: [PATCH 0842/1129] latte-dock: 0.8.1 -> 0.8.2 (#50059)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/latte-dock/versions
---
 pkgs/applications/misc/latte-dock/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/latte-dock/default.nix b/pkgs/applications/misc/latte-dock/default.nix
index 6d22be32afaf..5af5d558dd74 100644
--- a/pkgs/applications/misc/latte-dock/default.nix
+++ b/pkgs/applications/misc/latte-dock/default.nix
@@ -3,12 +3,12 @@
 
 mkDerivation rec {
   pname = "latte-dock";
-  version = "0.8.1";
+  version = "0.8.2";
   name = "${pname}-${version}";
 
   src = fetchurl {
     url = "https://download.kde.org/stable/${pname}/${name}.tar.xz";
-    sha256 = "1f480ahrsxrksiiyspg7kb1hnz4vcjbs3w039cjkq2vp4wvjd74q";
+    sha256 = "1acwgxg9swmazi9bg5a0iyyin07h2gvp3mhbn6cfqqhpmndqxfdx";
     name = "${name}.tar.xz";
   };
 

From f4a889ef36da9c62b5dde4649a769e2fbb643db2 Mon Sep 17 00:00:00 2001
From: Valentin Heidelberger <github@valentinsblog.com>
Date: Fri, 9 Nov 2018 22:19:22 +0100
Subject: [PATCH 0843/1129] kdeconnect: 1.3.1 -> 1.3.3

---
 pkgs/applications/misc/kdeconnect/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/kdeconnect/default.nix b/pkgs/applications/misc/kdeconnect/default.nix
index 97e371e9e72c..d15926ba6fb7 100644
--- a/pkgs/applications/misc/kdeconnect/default.nix
+++ b/pkgs/applications/misc/kdeconnect/default.nix
@@ -20,12 +20,12 @@
 
 stdenv.mkDerivation rec {
   pname = "kdeconnect";
-  version = "1.3.1";
+  version = "1.3.3";
   name = "${pname}-${version}";
 
   src = fetchurl {
     url = "mirror://kde/stable/${pname}/${version}/src/${pname}-kde-${version}.tar.xz";
-    sha256 = "0rzjbn4d2lh81n19dd3a5ilm8qml3zs3g3ahg75avcw8770rr344";
+    sha256 = "1vac0mw1myrswr61adv7lgif0c4wzw5wnsj0sqxj6msp4l4pfgsg";
   };
 
   buildInputs = [

From ad6bfada7a5c319e60e57d6e858416a1fff83bee Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 13:28:28 -0800
Subject: [PATCH 0844/1129] kubernetes: 1.12.1 -> 1.12.2

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/kubernetes/versions
---
 pkgs/applications/networking/cluster/kubernetes/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/cluster/kubernetes/default.nix b/pkgs/applications/networking/cluster/kubernetes/default.nix
index 343380c60751..c3ed2d16df18 100644
--- a/pkgs/applications/networking/cluster/kubernetes/default.nix
+++ b/pkgs/applications/networking/cluster/kubernetes/default.nix
@@ -15,13 +15,13 @@ with lib;
 
 stdenv.mkDerivation rec {
   name = "kubernetes-${version}";
-  version = "1.12.1";
+  version = "1.12.2";
 
   src = fetchFromGitHub {
     owner = "kubernetes";
     repo = "kubernetes";
     rev = "v${version}";
-    sha256 = "1gm0v5p008w9i4k94ddjdyfqfsbx7a6ngmh81p155599hifm32zc";
+    sha256 = "14w77yw8pd2y5d764byh31vv9203y38zlvcr1a9wylrs00kgzwfw";
   };
 
   buildInputs = [ removeReferencesTo makeWrapper which go_1_10 rsync go-bindata ];

From d80d9aa3ba09cb55c40068d79398b474bbcfd414 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 13:34:07 -0800
Subject: [PATCH 0845/1129] libimagequant: 2.12.1 -> 2.12.2

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/libimagequant/versions
---
 pkgs/development/libraries/libimagequant/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/libimagequant/default.nix b/pkgs/development/libraries/libimagequant/default.nix
index d232e268f309..ccd52f81d111 100644
--- a/pkgs/development/libraries/libimagequant/default.nix
+++ b/pkgs/development/libraries/libimagequant/default.nix
@@ -3,7 +3,7 @@
 with stdenv;
 
 let
-  version = "2.12.1";
+  version = "2.12.2";
 in
   mkDerivation {
     name = "libimagequant-${version}";
@@ -11,7 +11,7 @@ in
       owner = "ImageOptim";
       repo = "libimagequant";
       rev = "${version}";
-      sha256 = "0r7zgsnhqci2rjilh9bzw43miwp669k6b7q16hdjzrq4nr0xpvbl";
+      sha256 = "1k61ifcjbp2lcrwqidflj99inkyhpbrw0hl1nzq1rjp5dnw2y5lw";
     };
 
     preConfigure = ''

From afefa274bec48d0e55589b21ec4ab494ca2b0a55 Mon Sep 17 00:00:00 2001
From: MGregoire <gregoire@martinache.net>
Date: Fri, 9 Nov 2018 22:29:48 +0100
Subject: [PATCH 0846/1129] keepass-keepassrpc: v1.7.3 -> v.1.8.0

---
 .../misc/keepass-plugins/keepassrpc/default.nix             | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/misc/keepass-plugins/keepassrpc/default.nix b/pkgs/applications/misc/keepass-plugins/keepassrpc/default.nix
index b2980bcd8aea..b45cb24b1b51 100644
--- a/pkgs/applications/misc/keepass-plugins/keepassrpc/default.nix
+++ b/pkgs/applications/misc/keepass-plugins/keepassrpc/default.nix
@@ -1,12 +1,12 @@
 { stdenv, buildEnv, fetchurl, mono }:
 
 let
-  version = "1.7.3.1";
+  version = "1.8.0";
   drv = stdenv.mkDerivation {
     name = "keepassrpc-${version}";
     src = fetchurl {
       url    = "https://github.com/kee-org/keepassrpc/releases/download/v${version}/KeePassRPC.plgx";
-      sha256 = "1y9b35qg27caj3pbaqqzrqpk61hbbd8617ziwdc9vl799i786m9k";
+      sha256 = "1dclfpia559cqf78qw29zz235h1df5md4kgjv3bbi8y41wwmx7cd";
     };
 
     meta = with stdenv.lib; {
@@ -14,7 +14,7 @@ let
       homepage    = https://github.com/kee-org/keepassrpc;
       platforms   = [ "x86_64-linux" ];
       license     = licenses.gpl2;
-      maintainers = with maintainers; [ mjanczyk svsdep ];
+      maintainers = with maintainers; [ mjanczyk svsdep mgregoire ];
     };
 
     pluginFilename = "KeePassRPC.plgx";

From 3f8c96c4966ea2114fffc6d4e4143b520dc92281 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 13:36:39 -0800
Subject: [PATCH 0847/1129] libestr: 0.1.10 -> 0.1.11

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/libestr/versions
---
 pkgs/development/libraries/libestr/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/libestr/default.nix b/pkgs/development/libraries/libestr/default.nix
index 96de7eb7b3c2..df67b849cd3f 100644
--- a/pkgs/development/libraries/libestr/default.nix
+++ b/pkgs/development/libraries/libestr/default.nix
@@ -1,11 +1,11 @@
 { stdenv, fetchurl }:
 
 stdenv.mkDerivation rec {
-  name = "libestr-0.1.10";
+  name = "libestr-0.1.11";
 
   src = fetchurl {
     url = "http://libestr.adiscon.com/files/download/${name}.tar.gz";
-    sha256 = "0g3hmh3wxgjbn5g6cgy2l0ja806jd0ayp22bahcds3kmdq95wrdx";
+    sha256 = "0910ifzcs8kpd3srrr4fvbacgh2zrc6yn7i4rwfj6jpzhlkjnqs6";
   };
 
   meta = with stdenv.lib; {

From 634db3c436ec3c1bbb48ca08455dd064f1747710 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Fri, 9 Nov 2018 21:44:49 +0000
Subject: [PATCH 0848/1129] plyvel: restrict to linux

on macOS we see the following error:

ImportError: Failed to import test module: test.test_plyvel
Traceback (most recent call last):
  File "/nix/store/0mha803yql9q7b6h93m8940z3sjbhiy8-python3-3.6.6/lib/python3.6/unittest/loader.py", line 428, in _find_test_path
    module = self._get_module_from_name(name)
  File "/nix/store/0mha803yql9q7b6h93m8940z3sjbhiy8-python3-3.6.6/lib/python3.6/unittest/loader.py", line 369, in _get_module_from_name
    __import__(name)
  File "/private/tmp/nix-build-python3.6-plyvel-1.0.5.drv-0/plyvel-1.0.5/test/test_plyvel.py", line 17, in <module>
    import plyvel
  File "/private/tmp/nix-build-python3.6-plyvel-1.0.5.drv-0/plyvel-1.0.5/plyvel/__init__.py", line 6, in <module>
    from ._plyvel import (  # noqa
ImportError: dlopen(/private/tmp/nix-build-python3.6-plyvel-1.0.5.drv-0/plyvel-1.0.5/plyvel/_plyvel.cpython-36m-darwin.so, 2): Library not loaded: /nix/store/rq39v3s1l6vc85wwmrxsmlpi4rnbjnx6-leveldb-1.20/lib/out-shared/libleveldb.dylib.1.20
  Referenced from: /private/tmp/nix-build-python3.6-plyvel-1.0.5.drv-0/plyvel-1.0.5/plyvel/_plyvel.cpython-36m-darwin.so
  Reason: image not found
---
 pkgs/development/python-modules/plyvel/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/plyvel/default.nix b/pkgs/development/python-modules/plyvel/default.nix
index b3592c19f9a3..bb0b56b1e9c0 100644
--- a/pkgs/development/python-modules/plyvel/default.nix
+++ b/pkgs/development/python-modules/plyvel/default.nix
@@ -22,8 +22,8 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "Fast and feature-rich Python interface to LevelDB";
+    platforms = platforms.linux;
     homepage = https://github.com/wbolster/plyvel;
     license = licenses.bsd3;
   };
-
 }

From 2ac82e1e5cb3daa7c19118dbdd035ac25c6ba661 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 14:01:54 -0800
Subject: [PATCH 0849/1129] jruby: 9.2.0.0 -> 9.2.1.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jruby/versions
---
 pkgs/development/interpreters/jruby/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/interpreters/jruby/default.nix b/pkgs/development/interpreters/jruby/default.nix
index c67fae936ce7..81b71d721b84 100644
--- a/pkgs/development/interpreters/jruby/default.nix
+++ b/pkgs/development/interpreters/jruby/default.nix
@@ -6,11 +6,11 @@ rubyVersion = callPackage ../ruby/ruby-version.nix {} "2" "3" "3" "";
 jruby = stdenv.mkDerivation rec {
   name = "jruby-${version}";
 
-  version = "9.2.0.0";
+  version = "9.2.1.0";
 
   src = fetchurl {
     url = "https://s3.amazonaws.com/jruby.org/downloads/${version}/jruby-bin-${version}.tar.gz";
-    sha256 = "1106s1vmcm36gm3vrl1sjrrr2wj6splgik1zrfb7c2y9bzm8swa2";
+    sha256 = "0d98ydiavdr811xsrz9zbw9yjpn0acc2ycakqpfg1vs4n5w7764c";
   };
 
   buildInputs = [ makeWrapper ];

From 2af7527bd1ed653415e83c0e807fce6d7f8a48d6 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 14:13:12 -0800
Subject: [PATCH 0850/1129] jackett: 0.10.365 -> 0.10.420

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jackett/versions
---
 pkgs/servers/jackett/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/jackett/default.nix b/pkgs/servers/jackett/default.nix
index 100bc4709bf1..bb8732f3aaec 100644
--- a/pkgs/servers/jackett/default.nix
+++ b/pkgs/servers/jackett/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "jackett-${version}";
-  version = "0.10.365";
+  version = "0.10.420";
 
   src = fetchurl {
     url = "https://github.com/Jackett/Jackett/releases/download/v${version}/Jackett.Binaries.Mono.tar.gz";
-    sha256 = "1wq4by10wxhcz72fappb7isw0850laf2yk5bgpx8nrjxigmv4ik0";
+    sha256 = "192nj5k3ad8k4xdipr052sb3y3hi9csmyhjadlyy6xl8m2zz6win";
   };
 
   buildInputs = [ makeWrapper ];

From 40fded0209918024f74a6a17a3562e65c67bbe03 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 14:27:31 -0800
Subject: [PATCH 0851/1129] i3-gaps: 4.15.0.1 -> 4.16

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/i3-gaps/versions
---
 pkgs/applications/window-managers/i3/gaps.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/window-managers/i3/gaps.nix b/pkgs/applications/window-managers/i3/gaps.nix
index 251b893f92ff..01a89b49e715 100644
--- a/pkgs/applications/window-managers/i3/gaps.nix
+++ b/pkgs/applications/window-managers/i3/gaps.nix
@@ -3,12 +3,12 @@
 i3.overrideAttrs (oldAttrs : rec {
 
   name = "i3-gaps-${version}";
-  version = "4.15.0.1";
+  version = "4.16";
   releaseDate = "2018-03-13";
 
   src = fetchurl {
     url = "https://github.com/Airblader/i3/archive/${version}.tar.gz";
-    sha256 = "16s6bink8yj3zix4vww64b745d5drf2vqjg8vz3pwzrark09hfal";
+    sha256 = "16d215y9g27b75rifm1cgznxg73fmg5ksigi0gbj7pfd6x6bqcy9";
   };
 
   nativeBuildInputs = oldAttrs.nativeBuildInputs ++ [ autoreconfHook ];

From ddc829348e87781eafb71ed3754fcfb60aff4abc Mon Sep 17 00:00:00 2001
From: Valentin Heidelberger <github@valentinsblog.com>
Date: Fri, 9 Nov 2018 23:34:03 +0100
Subject: [PATCH 0852/1129] youtube-dl: 2018.10.29 -> 2018.11.07

---
 pkgs/tools/misc/youtube-dl/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/misc/youtube-dl/default.nix b/pkgs/tools/misc/youtube-dl/default.nix
index 8c08ee65805c..450d5c68245f 100644
--- a/pkgs/tools/misc/youtube-dl/default.nix
+++ b/pkgs/tools/misc/youtube-dl/default.nix
@@ -19,11 +19,11 @@ buildPythonPackage rec {
   # The websites youtube-dl deals with are a very moving target. That means that
   # downloads break constantly. Because of that, updates should always be backported
   # to the latest stable release.
-  version = "2018.10.29";
+  version = "2018.11.07";
 
   src = fetchurl {
     url = "https://yt-dl.org/downloads/${version}/${pname}-${version}.tar.gz";
-    sha256 = "1ndkkpnmjdyz5gjjmvaf18761lxa2c0kypicm9bpqpaj7sdr9s27";
+    sha256 = "1rvc2m2kbm2kycqsa7fkcg5gql9f0w3hn1a7jg48zzl06ayggxk9";
   };
 
   nativeBuildInputs = [ makeWrapper ];

From 3a9d5f855f830c22479f83d68e375d675ac623e6 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 14:35:57 -0800
Subject: [PATCH 0853/1129] irqbalance: 1.4.0 -> 1.5.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/irqbalance/versions
---
 pkgs/os-specific/linux/irqbalance/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/irqbalance/default.nix b/pkgs/os-specific/linux/irqbalance/default.nix
index 439b2aff6afc..c4a29d2d601d 100644
--- a/pkgs/os-specific/linux/irqbalance/default.nix
+++ b/pkgs/os-specific/linux/irqbalance/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "irqbalance-${version}";
-  version = "1.4.0";
+  version = "1.5.0";
 
   src = fetchFromGitHub {
     owner = "irqbalance";
     repo = "irqbalance";
     rev = "v${version}";
-    sha256 = "05q3cdz2a5zp5s2bdz5a80y9vq7awqw9lbvyvh6vjs9a8vg80hwm";
+    sha256 = "1wdwch4nb479xhinin4yqvcjah6h09i4nh8fhnsfbn1mzl0hiv09";
   };
 
   nativeBuildInputs = [ autoreconfHook pkgconfig ];

From efbc6f4648d4452d206a4c4205d30600f0cc35c1 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 14:47:08 -0800
Subject: [PATCH 0854/1129] kdeconnect: 1.3.1 -> 1.3.3

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/kdeconnect/versions
---
 pkgs/applications/misc/kdeconnect/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/kdeconnect/default.nix b/pkgs/applications/misc/kdeconnect/default.nix
index 97e371e9e72c..d15926ba6fb7 100644
--- a/pkgs/applications/misc/kdeconnect/default.nix
+++ b/pkgs/applications/misc/kdeconnect/default.nix
@@ -20,12 +20,12 @@
 
 stdenv.mkDerivation rec {
   pname = "kdeconnect";
-  version = "1.3.1";
+  version = "1.3.3";
   name = "${pname}-${version}";
 
   src = fetchurl {
     url = "mirror://kde/stable/${pname}/${version}/src/${pname}-kde-${version}.tar.xz";
-    sha256 = "0rzjbn4d2lh81n19dd3a5ilm8qml3zs3g3ahg75avcw8770rr344";
+    sha256 = "1vac0mw1myrswr61adv7lgif0c4wzw5wnsj0sqxj6msp4l4pfgsg";
   };
 
   buildInputs = [

From 9fdf71d28f8b2b8f5671bbebc69d9ee1818dd7b2 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 14:58:11 -0800
Subject: [PATCH 0855/1129] hyx: 0.1.4 -> 0.1.5

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/hyx/versions
---
 pkgs/tools/text/hyx/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/text/hyx/default.nix b/pkgs/tools/text/hyx/default.nix
index 1ba3534e3f8a..2d8d41bd9426 100644
--- a/pkgs/tools/text/hyx/default.nix
+++ b/pkgs/tools/text/hyx/default.nix
@@ -1,11 +1,11 @@
 { lib, stdenv, fetchurl }:
 
 stdenv.mkDerivation rec {
-  name = "hyx-0.1.4";
+  name = "hyx-0.1.5";
 
   src = fetchurl {
     url = "https://yx7.cc/code/hyx/${name}.tar.xz";
-    sha256 = "049r610hyrrfa62vpiqyb3rh99bpy8cnqy4nd4sih01733cmdhyx";
+    sha256 = "0gd8fbdyw12jwffa5dgcql4ry22xbdhqdds1qwzk1rkcrkgnc1mg";
   };
 
   installPhase = ''

From 972c7568f6fcbba8d66ab764314c1bebdee870f2 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 15:10:51 -0800
Subject: [PATCH 0856/1129] jfbview: 0.5.5 -> 0.5.6

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jfbview/versions
---
 pkgs/os-specific/linux/jfbview/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/jfbview/default.nix b/pkgs/os-specific/linux/jfbview/default.nix
index dafe9069b5a8..e037ad98226d 100644
--- a/pkgs/os-specific/linux/jfbview/default.nix
+++ b/pkgs/os-specific/linux/jfbview/default.nix
@@ -15,13 +15,13 @@ in
 
 stdenv.mkDerivation rec {
   name = "${package}-${version}";
-  version = "0.5.5";
+  version = "0.5.6";
 
   src = fetchFromGitHub {
     repo = "JFBView";
     owner = "jichu4n";
     rev = version;
-    sha256 = "1w844ha9lp49ik79yfislib34455nl9gcksbx22hiz30gmqwzakz";
+    sha256 = "09rcmlf04aka0yzr25imadi0fl4nlbsxcahs7fhvzx4nql4halqw";
   };
 
   hardeningDisable = [ "format" ];

From 25617e04405d7e9a7f4dd72ce2164187adf9f7ac Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 15:26:07 -0800
Subject: [PATCH 0857/1129] kakoune: 2018.09.04 -> 2018.10.27

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/kakoune-unstable/versions
---
 pkgs/applications/editors/kakoune/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/editors/kakoune/default.nix b/pkgs/applications/editors/kakoune/default.nix
index e50625fa0e89..23f9e486ad9a 100644
--- a/pkgs/applications/editors/kakoune/default.nix
+++ b/pkgs/applications/editors/kakoune/default.nix
@@ -4,12 +4,12 @@ with stdenv.lib;
 
 stdenv.mkDerivation rec {
   name = "kakoune-unstable-${version}";
-  version = "2018.09.04";
+  version = "2018.10.27";
   src = fetchFromGitHub {
     repo = "kakoune";
     owner = "mawww";
     rev = "v${version}";
-    sha256 = "08v55hh7whm6hx6a047gszh0h5g35k3r8r52aggv7r2ybzrrw6w1";
+    sha256 = "1w7jmq57h8gxxbzg0n3lgd6cci77xb9mziy6lr8330nzqc85zp9p";
   };
   nativeBuildInputs = [ pkgconfig ];
   buildInputs = [ ncurses asciidoc docbook_xsl libxslt ];

From ad4560c7b78c85d2356b1238127a8b3b48db9d41 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 15:39:35 -0800
Subject: [PATCH 0858/1129] apache-jena-fuseki: 3.8.0 -> 3.9.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/apache-jena-fuseki/versions
---
 pkgs/servers/nosql/apache-jena/fuseki-binary.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/nosql/apache-jena/fuseki-binary.nix b/pkgs/servers/nosql/apache-jena/fuseki-binary.nix
index d965485356c8..63b222529a86 100644
--- a/pkgs/servers/nosql/apache-jena/fuseki-binary.nix
+++ b/pkgs/servers/nosql/apache-jena/fuseki-binary.nix
@@ -3,10 +3,10 @@ let
   s = # Generated upstream information
   rec {
     baseName="apache-jena-fuseki";
-    version = "3.8.0";
+    version = "3.9.0";
     name="${baseName}-${version}";
     url="http://archive.apache.org/dist/jena/binaries/apache-jena-fuseki-${version}.tar.gz";
-    sha256 = "0jca96996zl3f1qc15sfv45n09rnnv24qxv87y16dnwnyc1ism0a";
+    sha256 = "1kf524j7wmvbjrr3grrhfddv3c3niddhj2f6m7hz9pqvf7nykvi4";
   };
   buildInputs = [
     makeWrapper

From c281799090f851628675a4d651418c96fea29bc4 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 16:04:01 -0800
Subject: [PATCH 0859/1129] ibus-engines.typing-booster-unwrapped: 2.1.2 ->
 2.1.3

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ibus-typing-booster/versions
---
 .../inputmethods/ibus-engines/ibus-typing-booster/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/default.nix b/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/default.nix
index b75ce90cf29f..86ff8e68fe7a 100644
--- a/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/default.nix
+++ b/pkgs/tools/inputmethods/ibus-engines/ibus-typing-booster/default.nix
@@ -13,13 +13,13 @@ in
 
 stdenv.mkDerivation rec {
   name = "ibus-typing-booster-${version}";
-  version = "2.1.2";
+  version = "2.1.3";
 
   src = fetchFromGitHub {
     owner = "mike-fabian";
     repo = "ibus-typing-booster";
     rev = version;
-    sha256 = "0qg49d0hsb1mvq33p14nc6mdw6x3km1ax620gphczfmz9ki5bf4g";
+    sha256 = "1v9w5ak8ixasny7nkiwf6q058795c349dc2gr7jjpkz94gd4qls5";
   };
 
   patches = [ ./hunspell-dirs.patch ];

From 8d0b95dc09f9aa6d75378d3375d98785cbca5e3f Mon Sep 17 00:00:00 2001
From: Ryan Mulligan <ryan@ryantm.com>
Date: Fri, 9 Nov 2018 16:07:42 -0800
Subject: [PATCH 0860/1129] nixos/monit: change type of 'config' option to
 lines

By using types.lines for 'config', we can specify monit configurations
in lots of modules and they can all be automatically combined together
with newlines. This is desireable because different modules might want
to each specify the small monitoring task specific to their service.

This commit also updates the module to use current idioms.
---
 nixos/modules/services/monitoring/monit.nix | 33 ++++++++++-----------
 1 file changed, 15 insertions(+), 18 deletions(-)

diff --git a/nixos/modules/services/monitoring/monit.nix b/nixos/modules/services/monitoring/monit.nix
index d48e5c550abb..32e14ab21ffc 100644
--- a/nixos/modules/services/monitoring/monit.nix
+++ b/nixos/modules/services/monitoring/monit.nix
@@ -1,33 +1,30 @@
-# Monit system watcher
-# http://mmonit.org/monit/
-
 {config, pkgs, lib, ...}:
 
-let inherit (lib) mkOption mkIf;
+with lib;
+
+let
+  cfg = config.services.monit;
 in
 
 {
-  options = {
-    services.monit = {
-      enable = mkOption {
-        default = false;
-        description = ''
-          Whether to run Monit system watcher.
-        '';
-      };
-      config = mkOption {
-        default = "";
-        description = "monitrc content";
-      };
+  options.services.monit = {
+
+    enable = mkEnableOption "Monit";
+
+    config = mkOption {
+      type = types.lines;
+      default = "";
+      description = "monitrc content";
     };
+
   };
 
-  config = mkIf config.services.monit.enable {
+  config = mkIf cfg.enable {
 
     environment.systemPackages = [ pkgs.monit ];
 
     environment.etc."monitrc" = {
-      text = config.services.monit.config;
+      text = cfg.config;
       mode = "0400";
     };
 

From 76d07488d740e9cc0fa08b4fc80ed445c634494f Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 16:10:36 -0800
Subject: [PATCH 0861/1129] httpie: 0.9.9 -> 1.0.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/httpie/versions
---
 pkgs/tools/networking/httpie/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/networking/httpie/default.nix b/pkgs/tools/networking/httpie/default.nix
index ef50c0ce0847..10f57532df10 100644
--- a/pkgs/tools/networking/httpie/default.nix
+++ b/pkgs/tools/networking/httpie/default.nix
@@ -1,11 +1,11 @@
 { stdenv, fetchurl, pythonPackages }:
 
 pythonPackages.buildPythonApplication rec {
-  name = "httpie-0.9.9";
+  name = "httpie-1.0.0";
 
   src = fetchurl {
     url = "mirror://pypi/h/httpie/${name}.tar.gz";
-    sha256 = "1jsgfkyzzizgfy1b0aicb4cp34d5pwskz9c4a8kf4rq3lrpjw87i";
+    sha256 = "09cs2n76318i34vms9pdnbds53pnp1m11gwn444j49na5qnk8l0n";
   };
 
   propagatedBuildInputs = with pythonPackages; [ pygments requests ];

From 3902a47bedbd9f70793a0fd55a4e2a2e73f073d4 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 16:17:35 -0800
Subject: [PATCH 0862/1129] jmol: 14.29.26 -> 14.29.28

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/jmol/versions
---
 pkgs/applications/science/chemistry/jmol/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/science/chemistry/jmol/default.nix b/pkgs/applications/science/chemistry/jmol/default.nix
index dab30e90f4d8..72dc154b71d4 100644
--- a/pkgs/applications/science/chemistry/jmol/default.nix
+++ b/pkgs/applications/science/chemistry/jmol/default.nix
@@ -17,7 +17,7 @@ let
   };
 in
 stdenv.mkDerivation rec {
-  version = "14.29.26";
+  version = "14.29.28";
   pname = "jmol";
   name = "${pname}-${version}";
 
@@ -25,7 +25,7 @@ stdenv.mkDerivation rec {
     baseVersion = "${lib.versions.major version}.${lib.versions.minor version}";
   in fetchurl {
     url = "mirror://sourceforge/jmol/Jmol/Version%20${baseVersion}/Jmol%20${version}/Jmol-${version}-binary.tar.gz";
-    sha256 = "0a728lwqbbnm5v2spi5rbqy3xldbcf2gcsf48rkq3p43laps3630";
+    sha256 = "0m72w5qsnsc07p7jjya78i4yz7zrdjqj8zpk65sa0xa2fh1y01g0";
   };
 
   patchPhase = ''

From 14ee6207385643d3535d9b3adf61be7c28771cf8 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 16:22:10 -0800
Subject: [PATCH 0863/1129] hebcal: 4.14 -> 4.15

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/hebcal/versions
---
 pkgs/tools/misc/hebcal/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/misc/hebcal/default.nix b/pkgs/tools/misc/hebcal/default.nix
index da231c16cc90..edb5973fbb70 100644
--- a/pkgs/tools/misc/hebcal/default.nix
+++ b/pkgs/tools/misc/hebcal/default.nix
@@ -1,14 +1,14 @@
 { stdenv, fetchFromGitHub, autoreconfHook }:
 
 stdenv.mkDerivation rec {
-  version = "4.14";
+  version = "4.15";
   name = "hebcal-${version}";
 
   src = fetchFromGitHub {
     owner = "hebcal";
     repo = "hebcal";
     rev = "v${version}";
-    sha256 = "1zq8f7cigh5r31p03az338sbygkx8gbday35c9acppglci3r8fvc";
+    sha256 = "1s9iardqyzn42hs0x9p4rig2m87v87jvzcrbb9arcci7nds66y3i";
   };
 
   nativeBuildInputs = [ autoreconfHook ];

From 7cd159db1b66d343de9960f660c6128db2711ef4 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 16:35:56 -0800
Subject: [PATCH 0864/1129] gocr: 0.51 -> 0.52

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gocr/versions
---
 pkgs/applications/graphics/gocr/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/graphics/gocr/default.nix b/pkgs/applications/graphics/gocr/default.nix
index 78772a63dfe3..f5fa8ca9221d 100644
--- a/pkgs/applications/graphics/gocr/default.nix
+++ b/pkgs/applications/graphics/gocr/default.nix
@@ -1,11 +1,11 @@
 { stdenv, fetchurl, tk }:
 
 stdenv.mkDerivation rec {
-  name = "gocr-0.51";
+  name = "gocr-0.52";
 
   src = fetchurl {
     url = "https://www-e.uni-magdeburg.de/jschulen/ocr/${name}.tar.gz";
-    sha256 = "14i6zi6q11h6d0qds2cpvgvhbxk5xaa027h8cd0wy1zblh7sxckf";
+    sha256 = "11l6gds1lrm8lwrrsxnm5fjlwz8q1xbh896cprrl4psz21in946z";
   };
 
   buildFlags = [ "all" "libs" ];

From 0efdc909642894d6fa07aa6e315625fc9e32dc08 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 17:06:13 -0800
Subject: [PATCH 0865/1129] glbinding: 2.1.4 -> 3.0.2

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/glbinding/versions
---
 pkgs/development/libraries/glbinding/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/glbinding/default.nix b/pkgs/development/libraries/glbinding/default.nix
index 339e0d8d60b9..60778df663a0 100644
--- a/pkgs/development/libraries/glbinding/default.nix
+++ b/pkgs/development/libraries/glbinding/default.nix
@@ -2,13 +2,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "glbinding";
-  version = "2.1.4";
+  version = "3.0.2";
 
   src = fetchFromGitHub {
     owner = "cginternals";
     repo = pname;
     rev = "v${version}";
-    sha256 = "1yic3p2iqzxc7wrjnqclx7vcaaqx5fiysq9rqbi6v390jqkg3zlz";
+    sha256 = "1lvcps0n0p8gg0p2bkm5aq4b4kv8bvxlaaf4fcham2pgbgzil9d4";
   };
 
   buildInputs = [ cmake libGLU xlibsWrapper ];

From 5ea22a5b00583843b3dbf3b1cc0c7a645578e376 Mon Sep 17 00:00:00 2001
From: volth <volth@webmaster.ms>
Date: Sat, 10 Nov 2018 01:18:06 +0000
Subject: [PATCH 0866/1129] nixos/nix: ignore nix.checkConfig when
 cross-compiling (#48225)

* nixos/nix: ignore nix.checkConfig when cross-compiling

the check always fails because of architecture mismatch

* typos
---
 nixos/modules/services/misc/nix-daemon.nix | 14 +++++++++-----
 1 file changed, 9 insertions(+), 5 deletions(-)

diff --git a/nixos/modules/services/misc/nix-daemon.nix b/nixos/modules/services/misc/nix-daemon.nix
index 5e171c08d893..973575570612 100644
--- a/nixos/modules/services/misc/nix-daemon.nix
+++ b/nixos/modules/services/misc/nix-daemon.nix
@@ -62,11 +62,15 @@ let
         ''}
         $extraOptions
         END
-      '' + optionalString cfg.checkConfig ''
-        echo "Checking that Nix can read nix.conf..."
-        ln -s $out ./nix.conf
-        NIX_CONF_DIR=$PWD ${cfg.package}/bin/nix show-config >/dev/null
-      '');
+      '' + optionalString cfg.checkConfig (
+            if pkgs.stdenv.hostPlatform != pkgs.stdenv.buildPlatform then ''
+              echo "Ignore nix.checkConfig when cross-compiling"
+            '' else ''
+              echo "Checking that Nix can read nix.conf..."
+              ln -s $out ./nix.conf
+              NIX_CONF_DIR=$PWD ${cfg.package}/bin/nix show-config >/dev/null
+            '')
+      );
 
 in
 

From 7fa2c1ebe335eeadcd05625fd08da57757921f90 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 18:03:31 -0800
Subject: [PATCH 0867/1129] gradio: 7.1 -> 7.2

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gradio/versions
---
 pkgs/applications/audio/gradio/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/audio/gradio/default.nix b/pkgs/applications/audio/gradio/default.nix
index 0e636c532b46..3aea07235d8a 100644
--- a/pkgs/applications/audio/gradio/default.nix
+++ b/pkgs/applications/audio/gradio/default.nix
@@ -16,7 +16,7 @@
 , gst_plugins ? with gst_all_1; [ gst-plugins-good gst-plugins-ugly ]
 }:
 let
-  version = "7.1";
+  version = "7.2";
 
 in stdenv.mkDerivation rec {
   name = "gradio-${version}";
@@ -25,7 +25,7 @@ in stdenv.mkDerivation rec {
     owner = "haecker-felix";
     repo = "gradio";
     rev = "v${version}";
-    sha256 = "0x0hmcjvpgvsm64ywcc71srlwqybfhadn5nkwycq0lh7r49d89kx";
+    sha256 = "0c4vlrfl0ljkiwarpwa8wcfmmihh6a5j4pi4yr0qshyl9xxvxiv3";
   };
 
   nativeBuildInputs = [

From d9695af1eeeeddbca2822e2c58df2a3d744e6538 Mon Sep 17 00:00:00 2001
From: Stephen <stephengroat@users.noreply.github.com>
Date: Fri, 9 Nov 2018 18:19:27 -0800
Subject: [PATCH 0868/1129] terraform-providers.aws: 1.43.0 -> 1.43.1

---
 .../networking/cluster/terraform-providers/data.nix           | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/cluster/terraform-providers/data.nix b/pkgs/applications/networking/cluster/terraform-providers/data.nix
index 4f892a1a8add..c3be5eade390 100644
--- a/pkgs/applications/networking/cluster/terraform-providers/data.nix
+++ b/pkgs/applications/networking/cluster/terraform-providers/data.nix
@@ -39,8 +39,8 @@
     {
       owner   = "terraform-providers";
       repo    = "terraform-provider-aws";
-      version = "1.43.0";
-      sha256  = "0d9g95rldlvv6cx0vnhc9h4wpwlrif3xzv5gskz4aif7w9rhn37b";
+      version = "1.43.1";
+      sha256  = "0fhw07kqcykfzlfhqh3wdz43kkhz3c63xkymnpw68kqx2vxx8ncv";
     };
   azurerm =
     {

From d8683675d981f8e520d9715bea03ab7165e563ab Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 18:30:01 -0800
Subject: [PATCH 0869/1129] groonga: 8.0.7 -> 8.0.8

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/groonga/versions
---
 pkgs/servers/search/groonga/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/search/groonga/default.nix b/pkgs/servers/search/groonga/default.nix
index 861bd7fe5ed5..c692cee08bd6 100644
--- a/pkgs/servers/search/groonga/default.nix
+++ b/pkgs/servers/search/groonga/default.nix
@@ -7,11 +7,11 @@
 stdenv.mkDerivation rec {
 
   name    = "groonga-${version}";
-  version = "8.0.7";
+  version = "8.0.8";
 
   src = fetchurl {
     url    = "https://packages.groonga.org/source/groonga/${name}.tar.gz";
-    sha256 = "040q525qdlxlypgs7jzklndshdvd5shzss67lcs6xhkbs0f977cc";
+    sha256 = "1fl5s0a5ncw8lj3ild2qqqxa3h4d3k98dmyki760c54kw6p6bycv";
   };
 
   buildInputs = with stdenv.lib;

From ad2180caf73ae9270e1b94e5b2166eac11d8c6c6 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 18:49:34 -0800
Subject: [PATCH 0870/1129] gImageReader: 3.2.99 -> 3.3.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gimagereader/versions
---
 pkgs/applications/misc/gImageReader/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/gImageReader/default.nix b/pkgs/applications/misc/gImageReader/default.nix
index 16693cfbf09c..ec867854dfb9 100644
--- a/pkgs/applications/misc/gImageReader/default.nix
+++ b/pkgs/applications/misc/gImageReader/default.nix
@@ -16,13 +16,13 @@ let
 in
 stdenv.mkDerivation rec {
   name = "gImageReader-${version}";
-  version = "3.2.99";
+  version = "3.3.0";
 
   src = fetchFromGitHub {
     owner= "manisandro";
     repo = "gImageReader";
     rev = "v${version}";
-    sha256 = "19dbxq83j77lbvi10a8x0xxgw5hbsqyc852c196zzvmwk3km6pnc";
+    sha256 = "0pjk4kr7bc5q4hi1xf7na2zln9fyqdazgzq62r3bg41nzy7fakcz";
   };
 
   nativeBuildInputs = [

From 80b2cafdb9ae996f3ee9a3519d0b0136cc0bdd2c Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 18:59:43 -0800
Subject: [PATCH 0871/1129] groovy: 2.5.2 -> 2.5.3

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/groovy/versions
---
 pkgs/development/interpreters/groovy/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/interpreters/groovy/default.nix b/pkgs/development/interpreters/groovy/default.nix
index 95484c9258a6..1dfd3476d484 100644
--- a/pkgs/development/interpreters/groovy/default.nix
+++ b/pkgs/development/interpreters/groovy/default.nix
@@ -4,11 +4,11 @@
 
 stdenv.mkDerivation rec {
   name = "groovy-${version}";
-  version = "2.5.2";
+  version = "2.5.3";
 
   src = fetchurl {
     url = "http://dl.bintray.com/groovy/maven/apache-groovy-binary-${version}.zip";
-    sha256 = "0bi85gvgpwd9ndg0kiwlrp560934dzy1072zpf587vrmpvqrcps9";
+    sha256 = "1iw5iiygl0a7dzh22gkjhzzxd7r8kb4lncjvvgqfpxx967djp527";
   };
 
   buildInputs = [ unzip makeWrapper ];

From c5f42c7d3555abef98eb4911d53826e52b90c6e4 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 19:03:58 -0800
Subject: [PATCH 0872/1129] google-compute-engine: 20180905 -> 20181011

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/google-compute-engine/versions
---
 pkgs/tools/virtualization/google-compute-engine/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/virtualization/google-compute-engine/default.nix b/pkgs/tools/virtualization/google-compute-engine/default.nix
index c0b9954206ad..5ddf15e09fad 100644
--- a/pkgs/tools/virtualization/google-compute-engine/default.nix
+++ b/pkgs/tools/virtualization/google-compute-engine/default.nix
@@ -11,14 +11,14 @@
 
 buildPythonApplication rec {
   name = "google-compute-engine-${version}";
-  version = "20180905";
+  version = "20181011";
   namePrefix = "";
 
   src = fetchFromGitHub {
     owner = "GoogleCloudPlatform";
     repo = "compute-image-packages";
     rev = version;
-    sha256 = "0095f000kgk2lc5p1y4080sbc0r7ly60a7i9id8hydfnkhqqz75n";
+    sha256 = "1b3wyr412qh113xvs671dqnacidil61gisfvg79wbq6wrdwswkp8";
   };
 
   postPatch = ''

From 2a842a1386b81159801086e53032d0cf2f580968 Mon Sep 17 00:00:00 2001
From: Matthew Harm Bekkema <mbekkema97@gmail.com>
Date: Sat, 10 Nov 2018 13:17:04 +1000
Subject: [PATCH 0873/1129] Workaround for issue #44254 (Steam cannot connect
 to friends network) (#44602)

* steam: Set TZ to detected timezone on startup

Workaround for issue #44254 (Steam cannot connect to friends network)
---
 pkgs/games/steam/chrootenv.nix | 9 +++++++++
 1 file changed, 9 insertions(+)

diff --git a/pkgs/games/steam/chrootenv.nix b/pkgs/games/steam/chrootenv.nix
index 2762155d63ce..c31b8b222168 100644
--- a/pkgs/games/steam/chrootenv.nix
+++ b/pkgs/games/steam/chrootenv.nix
@@ -180,6 +180,15 @@ in buildFHSUserEnv rec {
   '';
 
   profile = ''
+    # Workaround for issue #44254 (Steam cannot connect to friends network)
+    # https://github.com/NixOS/nixpkgs/issues/44254
+    if [ -z ''${TZ+x} ]; then
+      new_TZ="$(readlink -f /etc/localtime | grep -P -o '(?<=/zoneinfo/).*$')"
+      if [ $? -eq 0 ]; then
+        export TZ="$new_TZ"
+      fi
+    fi
+
     export STEAM_RUNTIME=${if nativeOnly then "0" else "/steamrt"}
   '' + extraProfile;
 

From d03103fd8402ec6cab588f552a9fa6431d8a9cf9 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 19:19:29 -0800
Subject: [PATCH 0874/1129] gpxsee: 6.2 -> 6.3

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gpxsee/versions
---
 pkgs/applications/misc/gpxsee/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/gpxsee/default.nix b/pkgs/applications/misc/gpxsee/default.nix
index d2427d95c19d..50a81890789a 100644
--- a/pkgs/applications/misc/gpxsee/default.nix
+++ b/pkgs/applications/misc/gpxsee/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "gpxsee-${version}";
-  version = "6.2";
+  version = "6.3";
 
   src = fetchFromGitHub {
     owner = "tumic0";
     repo = "GPXSee";
     rev = version;
-    sha256 = "13hd6n5mzkk4nx9v9dwg8vvixr73zjba72h6vmxvz9fmywc4rs5p";
+    sha256 = "0kbnmcis04kjqkd0msfjd8rdmdf23c71dpzx9wcpf2yadc9rv4c9";
   };
 
   nativeBuildInputs = [ qmake ];

From 221e0fae38f5cd370821d1b451cf105f58a64b2d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?L=C3=A9o=20Gaspard?= <leo@gaspard.io>
Date: Sat, 10 Nov 2018 12:30:54 +0900
Subject: [PATCH 0875/1129] nextcloud module: document process for using with
 pgsql unix auth

---
 nixos/modules/services/web-apps/nextcloud.nix | 7 ++++++-
 1 file changed, 6 insertions(+), 1 deletion(-)

diff --git a/nixos/modules/services/web-apps/nextcloud.nix b/nixos/modules/services/web-apps/nextcloud.nix
index c7e97bbeba9a..d0efdf88d73c 100644
--- a/nixos/modules/services/web-apps/nextcloud.nix
+++ b/nixos/modules/services/web-apps/nextcloud.nix
@@ -171,7 +171,12 @@ in {
       dbhost = mkOption {
         type = types.nullOr types.str;
         default = "localhost";
-        description = "Database host.";
+        description = ''
+          Database host.
+
+          Note: for using Unix authentication with PostgreSQL, this should be
+          set to <literal>/tmp</literal>.
+        '';
       };
       dbport = mkOption {
         type = with types; nullOr (either int str);

From 5e26455254b8f563c72042caa42e15c2a357ae4b Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 19:35:37 -0800
Subject: [PATCH 0876/1129] gegl_0_4: 0.4.8 -> 0.4.12

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gegl/versions
---
 pkgs/development/libraries/gegl/4.0.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/gegl/4.0.nix b/pkgs/development/libraries/gegl/4.0.nix
index c8b7b3b8eca5..cb7f2621353d 100644
--- a/pkgs/development/libraries/gegl/4.0.nix
+++ b/pkgs/development/libraries/gegl/4.0.nix
@@ -3,7 +3,7 @@
 , libwebp, gnome3, libintl }:
 
 let
-  version = "0.4.8";
+  version = "0.4.12";
 in stdenv.mkDerivation rec {
   name = "gegl-${version}";
 
@@ -12,7 +12,7 @@ in stdenv.mkDerivation rec {
 
   src = fetchurl {
     url = "https://download.gimp.org/pub/gegl/${stdenv.lib.versions.majorMinor version}/${name}.tar.bz2";
-    sha256 = "0jdfhf8wikba4h68k505x0br3gisiwivc33aca8v3ibaqpp6i53i";
+    sha256 = "0ljqxc4iyy2hrj31pxcy1xp4xm5zbx1nigqisphmg4p8mcz2jrz9";
   };
 
   enableParallelBuilding = true;

From 2252dc25851512bff8cc46ccedb8de481f638b34 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 19:38:48 -0800
Subject: [PATCH 0877/1129] hdparm: 9.56 -> 9.58 (#50098)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/hdparm/versions
---
 pkgs/os-specific/linux/hdparm/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/hdparm/default.nix b/pkgs/os-specific/linux/hdparm/default.nix
index cbdbefeb2a0e..542d99eeabe8 100644
--- a/pkgs/os-specific/linux/hdparm/default.nix
+++ b/pkgs/os-specific/linux/hdparm/default.nix
@@ -1,11 +1,11 @@
 { stdenv, fetchurl }:
 
 stdenv.mkDerivation rec {
-  name = "hdparm-9.56";
+  name = "hdparm-9.58";
 
   src = fetchurl {
     url = "mirror://sourceforge/hdparm/${name}.tar.gz";
-    sha256 = "1np42qyhb503khvacnjcl3hb1dqly68gj0a1xip3j5qhbxlyvybg";
+    sha256 = "03z1qm8zbgpxagk3994lvp24yqsshjibkwg05v9p3q1w7y48xrws";
 
   };
 

From 37f01d5bf88cf3985456a8dd38ffd2e8a5fea1fd Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 19:42:04 -0800
Subject: [PATCH 0878/1129] igv: 2.4.14 -> 2.4.15 (#50087)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/igv/versions
---
 pkgs/applications/science/biology/igv/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/science/biology/igv/default.nix b/pkgs/applications/science/biology/igv/default.nix
index 89e38104feb5..4ffbaf85fbda 100644
--- a/pkgs/applications/science/biology/igv/default.nix
+++ b/pkgs/applications/science/biology/igv/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "igv-${version}";
-  version = "2.4.14";
+  version = "2.4.15";
 
   src = fetchurl {
     url = "https://data.broadinstitute.org/igv/projects/downloads/2.4/IGV_${version}.zip";
-    sha256 = "0z9hk01czkdgi55b0qdvvi43jsqkkx6gl7wglamv425c6rklcvhc";
+    sha256 = "000l9hnkjbl9js7v8fyssgl4imrl0qd15mgz37qx2bwvimdp75gh";
   };
 
   buildInputs = [ unzip jre ];

From 75f77c24e0944976eb4a3b6ca21bff1d3f937632 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 20:04:48 -0800
Subject: [PATCH 0879/1129] feh: 2.28 -> 2.28.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/feh/versions
---
 pkgs/applications/graphics/feh/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/graphics/feh/default.nix b/pkgs/applications/graphics/feh/default.nix
index bbc533d37e84..5146919fde6c 100644
--- a/pkgs/applications/graphics/feh/default.nix
+++ b/pkgs/applications/graphics/feh/default.nix
@@ -6,11 +6,11 @@ with stdenv.lib;
 
 stdenv.mkDerivation rec {
   name = "feh-${version}";
-  version = "2.28";
+  version = "2.28.1";
 
   src = fetchurl {
     url = "https://feh.finalrewind.org/${name}.tar.bz2";
-    sha256 = "1nfka7w6pzj2bbwx8vydr2wwm7z8mrbqiy1xrq97c1g5bxy2vlhk";
+    sha256 = "0wian0gnx0yfxf8x9b8wr57fjd6rnmi3y3xj83ni6x0xqrjnf1lp";
   };
 
   outputs = [ "out" "man" "doc" ];

From 4f3f9c1e2567620e531a1b5b6f902002f15b836c Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 20:21:42 -0800
Subject: [PATCH 0880/1129] fio: 3.11 -> 3.12

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/fio/versions
---
 pkgs/tools/system/fio/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/system/fio/default.nix b/pkgs/tools/system/fio/default.nix
index c0210127d9f2..8e9fb6da5400 100644
--- a/pkgs/tools/system/fio/default.nix
+++ b/pkgs/tools/system/fio/default.nix
@@ -4,13 +4,13 @@
 
 stdenv.mkDerivation rec {
   name = "fio-${version}";
-  version = "3.11";
+  version = "3.12";
 
   src = fetchFromGitHub {
     owner  = "axboe";
     repo   = "fio";
     rev    = "fio-${version}";
-    sha256 = "0k5hja50qmz6qwm8h7z00zdgxhf1vg1g168jinqzn1521fihvlvz";
+    sha256 = "18awz03mdzdbja1n9nm6jyvv7ic2dabh6c7ip5vwpam8c6mj4yjq";
   };
 
   buildInputs = [ python zlib ]

From 9f75b9b208d8c893b54f269e11c5e6bdf264cc00 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 21:14:40 -0800
Subject: [PATCH 0881/1129] eventstat: 0.04.04 -> 0.04.05

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eventstat/versions
---
 pkgs/os-specific/linux/eventstat/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/eventstat/default.nix b/pkgs/os-specific/linux/eventstat/default.nix
index 8d96a503c766..cf3522b5f2fa 100644
--- a/pkgs/os-specific/linux/eventstat/default.nix
+++ b/pkgs/os-specific/linux/eventstat/default.nix
@@ -2,10 +2,10 @@
 
 stdenv.mkDerivation rec {
   name = "eventstat-${version}";
-  version = "0.04.04";
+  version = "0.04.05";
   src = fetchzip {
     url = "http://kernel.ubuntu.com/~cking/tarballs/eventstat/eventstat-${version}.tar.gz";
-    sha256 = "034xpdr3ip4w9k713wjc45x66k3nz6wg9wkzmchrjifxk4dldbd8";
+    sha256 = "1s9d6wl7f8cyn21fwj894dhfvl6f6f2h5xv26hg1yk3zfb5rmyn7";
   };
   buildInputs = [ ncurses ];
   installFlags = [ "DESTDIR=$(out)" ];

From bb5375b087ceb0872457b781a02046dee10a991a Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 22:14:19 -0800
Subject: [PATCH 0882/1129] eudev: 3.2.6 -> 3.2.7

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eudev/versions
---
 pkgs/os-specific/linux/eudev/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/eudev/default.nix b/pkgs/os-specific/linux/eudev/default.nix
index 771f012c2c21..7e8c9e413380 100644
--- a/pkgs/os-specific/linux/eudev/default.nix
+++ b/pkgs/os-specific/linux/eudev/default.nix
@@ -3,10 +3,10 @@ let
   s = # Generated upstream information
   rec {
     baseName="eudev";
-    version = "3.2.6";
+    version = "3.2.7";
     name="${baseName}-${version}";
     url="http://dev.gentoo.org/~blueness/eudev/eudev-${version}.tar.gz";
-    sha256 = "1qdpnvsv3qqwy6jl4i4b1dn212y6nvawpaladb7plfping9p2n46";
+    sha256 = "0qphgfw1vh2f73yjggkh5icxfq5gg811a0j6b22zkhaks95n211h";
   };
 
   nativeBuildInputs = [ pkgconfig ];

From 7c2caffc8831c0aa8457b770bd282d924becfb9d Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 22:23:16 -0800
Subject: [PATCH 0883/1129] facter: 3.12.0 -> 3.12.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/facter/versions
---
 pkgs/tools/system/facter/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/system/facter/default.nix b/pkgs/tools/system/facter/default.nix
index ba21fabe4350..dd2340668c49 100644
--- a/pkgs/tools/system/facter/default.nix
+++ b/pkgs/tools/system/facter/default.nix
@@ -2,10 +2,10 @@
 
 stdenv.mkDerivation rec {
   name = "facter-${version}";
-  version = "3.12.0";
+  version = "3.12.1";
 
   src = fetchFromGitHub {
-    sha256 = "1bg044j3dv6kcksy3cyda650ara8s4awdf665k10gaaxa0gwn0jj";
+    sha256 = "08mhsf9q9mhjfdzn8qkm12i1k5l7fnm6hqx6rqr8ni5iprl73b3d";
     rev = version;
     repo = "facter";
     owner = "puppetlabs";

From 0a387d40e1924e128ca8ec5a521e23415ecbda10 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 22:33:13 -0800
Subject: [PATCH 0884/1129] fwup: 1.2.5 -> 1.2.6

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/fwup/versions
---
 pkgs/tools/misc/fwup/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/misc/fwup/default.nix b/pkgs/tools/misc/fwup/default.nix
index 97eedd9be25e..160ea2faab61 100644
--- a/pkgs/tools/misc/fwup/default.nix
+++ b/pkgs/tools/misc/fwup/default.nix
@@ -4,13 +4,13 @@
 
 stdenv.mkDerivation rec {
   name = "fwup-${version}";
-  version = "1.2.5";
+  version = "1.2.6";
 
   src = fetchFromGitHub {
     owner = "fhunleth";
     repo = "fwup";
     rev = "v${version}";
-    sha256 = "0kraip4lr3fvcxvvq1dwjw7fyzs6bcjg14xn0g52985krxxn5pdc";
+    sha256 = "1rbpa0dcm9w1anz2bhcpmj2b678807s8j43zzkbkwh71aymfwr14";
   };
 
   doCheck = true;

From 5a8b71978c9719aba490d58f52fc27851efc02d0 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 22:42:32 -0800
Subject: [PATCH 0885/1129] docker_compose: 1.22.0 -> 1.23.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/docker-compose/versions
---
 pkgs/development/python-modules/docker_compose/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/docker_compose/default.nix b/pkgs/development/python-modules/docker_compose/default.nix
index 01a5b4aa8e68..4af9c32fed6a 100644
--- a/pkgs/development/python-modules/docker_compose/default.nix
+++ b/pkgs/development/python-modules/docker_compose/default.nix
@@ -6,12 +6,12 @@
 , enum34, functools32,
 }:
 buildPythonApplication rec {
-  version = "1.22.0";
+  version = "1.23.1";
   pname = "docker-compose";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "915cdd0ea7aff349d27a8e0585124ac38695635201770a35612837b25e234677";
+    sha256 = "15jijx3md70b9xw8818xjm70nr9pc27p7v7is0yi6agf8scvvqkq";
   };
 
   # lots of networking and other fails

From 464f1fb2231b0da499890a952e93e1e96dd4d494 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 23:00:59 -0800
Subject: [PATCH 0886/1129] csound: 6.11.0 -> 6.12.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/csound/versions
---
 pkgs/applications/audio/csound/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/audio/csound/default.nix b/pkgs/applications/audio/csound/default.nix
index c8ac0a938efa..da3cff0bac24 100644
--- a/pkgs/applications/audio/csound/default.nix
+++ b/pkgs/applications/audio/csound/default.nix
@@ -14,7 +14,7 @@
 
 stdenv.mkDerivation rec {
   name = "csound-${version}";
-  version = "6.11.0";
+  version = "6.12.0";
 
   enableParallelBuilding = true;
 
@@ -24,7 +24,7 @@ stdenv.mkDerivation rec {
     owner = "csound";
     repo = "csound";
     rev = version;
-    sha256 = "1nnfl8dqvc5b3f94zbvdg6bxr2wlp7as78hb31awxmvfwwihpv18";
+    sha256 = "0pv4s54cayvavdp6y30n3r1l5x83x9whyyd2v24y0dh224v3hbxi";
   };
 
   cmakeFlags = [ "-DBUILD_CSOUND_AC=0" ] # fails to find Score.hpp

From a481218df3b553de2ccd169db9e7561dcf3747fd Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 23:20:49 -0800
Subject: [PATCH 0887/1129] duplicity: 0.7.18.1 -> 0.7.18.2

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/duplicity/versions
---
 pkgs/tools/backup/duplicity/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/backup/duplicity/default.nix b/pkgs/tools/backup/duplicity/default.nix
index 9fbe05c725ef..cbe02a0593e5 100644
--- a/pkgs/tools/backup/duplicity/default.nix
+++ b/pkgs/tools/backup/duplicity/default.nix
@@ -2,11 +2,11 @@
 
 python2Packages.buildPythonApplication rec {
   name = "duplicity-${version}";
-  version = "0.7.18.1";
+  version = "0.7.18.2";
 
   src = fetchurl {
     url = "http://code.launchpad.net/duplicity/${stdenv.lib.versions.majorMinor version}-series/${version}/+download/${name}.tar.gz";
-    sha256 = "17c0203y5qz9w8iyhs26l44qf6a1vp26b5ykz1ypdr2kv6g02df9";
+    sha256 = "0j37dgyji36hvb5dbzlmh5rj83jwhni02yq16g6rd3hj8f7qhdn2";
   };
 
   buildInputs = [ librsync makeWrapper python2Packages.wrapPython ];

From 2c32f46974471f7167090e6a2d6a7259127d6ad6 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 23:24:07 -0800
Subject: [PATCH 0888/1129] cheat: 2.2.3 -> 2.3.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/cheat/versions
---
 pkgs/applications/misc/cheat/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/cheat/default.nix b/pkgs/applications/misc/cheat/default.nix
index ad3f65346593..1a162aca0d76 100644
--- a/pkgs/applications/misc/cheat/default.nix
+++ b/pkgs/applications/misc/cheat/default.nix
@@ -4,7 +4,7 @@ with python3Packages;
 buildPythonApplication rec {
   name = "${pname}-${version}";
   pname = "cheat";
-  version = "2.2.3";
+  version = "2.3.1";
 
   propagatedBuildInputs = [ docopt pygments ];
 
@@ -12,7 +12,7 @@ buildPythonApplication rec {
     owner = "chrisallenlane";
     repo = "cheat";
     rev = version;
-    sha256 = "1p9a54fax3b1ilqcwdlccy08ww3igwsyzcyikqivaxj5p6mqq6wl";
+    sha256 = "1dcpjvbv648r8325qjf30m8b4cyrrjbzc2kvh40zy2mbjsa755zr";
   };
   # no tests available
   doCheck = false;

From c884941bdd0c6390f9baf0e56e3c6ebd0312bff5 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 23:28:57 -0800
Subject: [PATCH 0889/1129] cpp-hocon: 0.2.0 -> 0.2.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/cpp-hocon/versions
---
 pkgs/development/libraries/cpp-hocon/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/cpp-hocon/default.nix b/pkgs/development/libraries/cpp-hocon/default.nix
index f08077a9a3cf..c2f3ce9b9b4a 100644
--- a/pkgs/development/libraries/cpp-hocon/default.nix
+++ b/pkgs/development/libraries/cpp-hocon/default.nix
@@ -2,10 +2,10 @@
 
 stdenv.mkDerivation rec {
   name = "cpp-hocon-${version}";
-  version = "0.2.0";
+  version = "0.2.1";
 
   src = fetchFromGitHub {
-    sha256 = "084vsn080z8mp5s54jaq0qdwlx0p62nbw1i0rffkag477h8vq68i";
+    sha256 = "0ar7q3rp46m01wvfa289bxnk9xma3ydc67by7i4nrpz8vamvhwc3";
     rev = version;
     repo = "cpp-hocon";
     owner = "puppetlabs";

From f780a982cf026025392c688dc25ff926e3b1a0d8 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Dani=C3=ABl=20de=20Kok?= <me@danieldk.eu>
Date: Sat, 10 Nov 2018 08:38:20 +0100
Subject: [PATCH 0890/1129] rustracer: remove rustup dependency

racer builds fine on Linux and macOS without racer as a dependency.
racer does not actually use rustup, but 'rustc --print sysroot', which
is already available through the rustc dependency.
---
 pkgs/development/tools/rust/racer/default.nix | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/tools/rust/racer/default.nix b/pkgs/development/tools/rust/racer/default.nix
index 7be1a9777c02..8474f99bc8b9 100644
--- a/pkgs/development/tools/rust/racer/default.nix
+++ b/pkgs/development/tools/rust/racer/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, rustPlatform, makeWrapper, rustup, substituteAll }:
+{ stdenv, fetchFromGitHub, rustPlatform, makeWrapper, substituteAll }:
 
 rustPlatform.buildRustPackage rec {
   name = "racer-${version}";
@@ -13,8 +13,7 @@ rustPlatform.buildRustPackage rec {
 
   cargoSha256 = "1j3fviimdxn6xa75z0l9wkgdnznp8q20jjs42mql6ql782dga5lk";
 
-  # rustup is required for test
-  buildInputs = [ makeWrapper rustup ];
+  buildInputs = [ makeWrapper ];
 
   preCheck = ''
     export RUST_SRC_PATH="${rustPlatform.rustcSrc}"

From aa7981c3a18843ee79cf3585faa2f8786f208577 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 23:43:25 -0800
Subject: [PATCH 0891/1129] doitlive: 4.0.1 -> 4.1.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/doitlive/versions
---
 pkgs/tools/misc/doitlive/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/misc/doitlive/default.nix b/pkgs/tools/misc/doitlive/default.nix
index a8ff34af9757..d322a19c98a3 100644
--- a/pkgs/tools/misc/doitlive/default.nix
+++ b/pkgs/tools/misc/doitlive/default.nix
@@ -2,11 +2,11 @@
 
 python3Packages.buildPythonApplication rec {
   pname = "doitlive";
-  version = "4.0.1";
+  version = "4.1.0";
 
   src = python3Packages.fetchPypi {
     inherit pname version;
-    sha256 = "1icnjkczy52i3cp1fmsijqny571fz1h4b3wpdzz79cn90fr326pc";
+    sha256 = "0zkvmnv6adz0gyqiql8anpxnh8zzpqk0p2n0pf2kxy55010qs4wz";
   };
 
   propagatedBuildInputs = with python3Packages; [ click click-completion click-didyoumean ];

From c6ddd51854e49feecfbfdb8d374fea79196b8007 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 23:51:17 -0800
Subject: [PATCH 0892/1129] disorderfs: 0.5.4 -> 0.5.5

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/disorderfs/versions
---
 pkgs/tools/filesystems/disorderfs/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/filesystems/disorderfs/default.nix b/pkgs/tools/filesystems/disorderfs/default.nix
index 138f727c3d30..07a9015fa28e 100644
--- a/pkgs/tools/filesystems/disorderfs/default.nix
+++ b/pkgs/tools/filesystems/disorderfs/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "disorderfs-${version}";
-  version = "0.5.4";
+  version = "0.5.5";
 
   src = fetchurl {
     url = "http://http.debian.net/debian/pool/main/d/disorderfs/disorderfs_${version}.orig.tar.gz";
-    sha256 = "0rp789qll5nmzw0jffx36ppcl9flr6hvdz84ah080mvghqkfdq8y";
+    sha256 = "1y1i7k5mx2pxr9bpijnsjyyw8qd7ak1h48gf6a6ca3dhna9ws6i1";
   };
 
   nativeBuildInputs = [ pkgconfig asciidoc ];

From e9081d9329eb1c1761ad337534ba9aaf7d2403d7 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 23:59:12 -0800
Subject: [PATCH 0893/1129] checkSSLCert: 1.73.0 -> 1.76.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/check_ssl_cert/versions
---
 pkgs/servers/monitoring/nagios/plugins/check_ssl_cert.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/monitoring/nagios/plugins/check_ssl_cert.nix b/pkgs/servers/monitoring/nagios/plugins/check_ssl_cert.nix
index b8649715eb37..a7747d1a256e 100644
--- a/pkgs/servers/monitoring/nagios/plugins/check_ssl_cert.nix
+++ b/pkgs/servers/monitoring/nagios/plugins/check_ssl_cert.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "check_ssl_cert-${version}";
-  version = "1.73.0";
+  version = "1.76.0";
 
   src = fetchFromGitHub {
     owner = "matteocorti";
     repo = "check_ssl_cert";
     rev = "v${version}";
-    sha256 = "0ymaypsv1s5pmk8fg9d67khcjy5h7vjbg6hd1fgslp92qcw90dqa";
+    sha256 = "0in52vcygscpf79938yfkf2yni49hbkvfkfhwpwyqr7qz9gd8c6j";
   };
 
   nativeBuildInputs = [ makeWrapper ];

From cb622a0dd713cae22e9552705969151b8312e452 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 01:02:57 -0800
Subject: [PATCH 0894/1129] clickhouse: 18.12.17 -> 18.14.9

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/clickhouse/versions
---
 pkgs/servers/clickhouse/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/clickhouse/default.nix b/pkgs/servers/clickhouse/default.nix
index 720898196c85..88907231d6ed 100644
--- a/pkgs/servers/clickhouse/default.nix
+++ b/pkgs/servers/clickhouse/default.nix
@@ -6,13 +6,13 @@
 
 stdenv.mkDerivation rec {
   name = "clickhouse-${version}";
-  version = "18.12.17";
+  version = "18.14.9";
 
   src = fetchFromGitHub {
     owner  = "yandex";
     repo   = "ClickHouse";
     rev    = "v${version}-stable";
-    sha256 = "0gkad6x6jlih30wal8nilhfqr3z22dzgz6m22pza3bhaba2ikk53";
+    sha256 = "1dsqwihh48fgsjy3jmfjk5271dw3052agw5wpfdm054nkkych86i";
   };
 
   nativeBuildInputs = [ cmake libtool ninja ];

From cd670dff0b6eeac6c79b760891b7d279a6e85adf Mon Sep 17 00:00:00 2001
From: Kevin Rauscher <kevin.rauscher@tomahna.fr>
Date: Sat, 10 Nov 2018 10:13:47 +0100
Subject: [PATCH 0895/1129] mopidy-iris: 3.28.1 -> 3.29.2

---
 pkgs/applications/audio/mopidy/iris.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/audio/mopidy/iris.nix b/pkgs/applications/audio/mopidy/iris.nix
index 3649a0a68863..c89bb2e897ba 100644
--- a/pkgs/applications/audio/mopidy/iris.nix
+++ b/pkgs/applications/audio/mopidy/iris.nix
@@ -2,11 +2,11 @@
 
 pythonPackages.buildPythonApplication rec {
   pname = "Mopidy-Iris";
-  version = "3.28.1";
+  version = "3.29.2";
 
   src = pythonPackages.fetchPypi {
     inherit pname version;
-    sha256 = "0yph01z8lw0r5bw3aa14w0l7z1ymxvpmb131gbaw3ib0srssgz64";
+    sha256 = "1v767a2j6lzp5yppfjna0ifv8psj60pphzd7njcdkx71dvpswpi2";
   };
 
   propagatedBuildInputs = [

From 1fadff893ff22f4dd9cbc8c341ccb0c0cddaacfb Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Sat, 10 Nov 2018 09:34:56 +0000
Subject: [PATCH 0896/1129] hyx: disable wall to fix darwin build

---
 pkgs/tools/text/hyx/default.nix              |  2 ++
 pkgs/tools/text/hyx/no-wall-by-default.patch | 11 +++++++++++
 2 files changed, 13 insertions(+)
 create mode 100644 pkgs/tools/text/hyx/no-wall-by-default.patch

diff --git a/pkgs/tools/text/hyx/default.nix b/pkgs/tools/text/hyx/default.nix
index 2d8d41bd9426..85085f6627e6 100644
--- a/pkgs/tools/text/hyx/default.nix
+++ b/pkgs/tools/text/hyx/default.nix
@@ -8,6 +8,8 @@ stdenv.mkDerivation rec {
     sha256 = "0gd8fbdyw12jwffa5dgcql4ry22xbdhqdds1qwzk1rkcrkgnc1mg";
   };
 
+  patches = [ ./no-wall-by-default.patch ];
+
   installPhase = ''
     install -vD hyx $out/bin/hyx
   '';
diff --git a/pkgs/tools/text/hyx/no-wall-by-default.patch b/pkgs/tools/text/hyx/no-wall-by-default.patch
new file mode 100644
index 000000000000..48ee20eff179
--- /dev/null
+++ b/pkgs/tools/text/hyx/no-wall-by-default.patch
@@ -0,0 +1,11 @@
+--- hyx-0.1.5.org/Makefile	2018-06-02 17:14:37.000000000 +0100
++++ hyx-0.1.5/Makefile	2018-11-10 09:25:49.569961762 +0000
+@@ -1,7 +1,7 @@
+ 
+ all: CFLAGS ?= -O2 -Wl,-s \
+                -Wl,-z,relro,-z,now -fpic -pie -D_FORTIFY_SOURCE=2 -fstack-protector-all
+-all: CFLAGS += -std=c99 -pedantic -Wall -Wextra -DNDEBUG
++all: CFLAGS += -std=c99 -DNDEBUG
+ all: hyx
+ 
+ debug: CFLAGS ?= -O0 -g \

From 1bbcda6171d325ee331f8c5d346666f1531b9fca Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 01:35:36 -0800
Subject: [PATCH 0897/1129] copyq: 3.6.1 -> 3.7.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/copyq/versions
---
 pkgs/applications/misc/copyq/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/copyq/default.nix b/pkgs/applications/misc/copyq/default.nix
index 39a87314ca7b..e05e140048b9 100644
--- a/pkgs/applications/misc/copyq/default.nix
+++ b/pkgs/applications/misc/copyq/default.nix
@@ -5,13 +5,13 @@
 
 stdenv.mkDerivation rec {
   name = "CopyQ-${version}";
-  version = "3.6.1";
+  version = "3.7.0";
 
   src  = fetchFromGitHub {
     owner = "hluk";
     repo = "CopyQ";
     rev = "v${version}";
-    sha256 = "0drhafnr1d595wa8zwvmgmrrqb86navdk4iw6ly6gmh0i800wz0z";
+    sha256 = "1dm02l1ry7ndn283774nzmg89wy1933f4iyf6n02p152zgx4llyf";
   };
 
   nativeBuildInputs = [ cmake ];

From 80318523af612a0ccc0e3c685e1fcba96c76f7c2 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Sat, 10 Nov 2018 09:38:23 +0000
Subject: [PATCH 0898/1129] hyx: limit to linux

clock_gettime is not available on macOS
---
 pkgs/tools/text/hyx/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/tools/text/hyx/default.nix b/pkgs/tools/text/hyx/default.nix
index 85085f6627e6..70745266fe55 100644
--- a/pkgs/tools/text/hyx/default.nix
+++ b/pkgs/tools/text/hyx/default.nix
@@ -19,6 +19,6 @@ stdenv.mkDerivation rec {
     homepage = https://yx7.cc/code/;
     license = licenses.mit;
     maintainers = with maintainers; [ fpletz ];
-    platforms = platforms.all;
+    platforms = platforms.linux;
   };
 }

From ae82b6a46a8a1de22ed2b264839fd422ddb0f63d Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 01:41:08 -0800
Subject: [PATCH 0899/1129] chirp: 20181009 -> 20181018

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/chirp-daily/versions
---
 pkgs/applications/misc/chirp/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/chirp/default.nix b/pkgs/applications/misc/chirp/default.nix
index 4f594d5d4c05..db67514cd077 100644
--- a/pkgs/applications/misc/chirp/default.nix
+++ b/pkgs/applications/misc/chirp/default.nix
@@ -3,11 +3,11 @@
 
 stdenv.mkDerivation rec {
   name = "chirp-daily-${version}";
-  version = "20181009";
+  version = "20181018";
 
   src = fetchurl {
     url = "https://trac.chirp.danplanet.com/chirp_daily/daily-${version}/${name}.tar.gz";
-    sha256 = "1h7i8skdjkz7n6dz3q9pzg1k31nh1ivy2mx3864bjvpkc7m6yyd9";
+    sha256 = "0jd7xi6q09b3djn1k7pj1sbqvw24kn7dcp9r6abvxily4pc1xhdr";
   };
 
   nativeBuildInputs = [ makeWrapper ];

From 0b95e5dbf7f329922acc98cc45e75a513dad7fb7 Mon Sep 17 00:00:00 2001
From: Jason Hilton <jhilton@toyon.com>
Date: Fri, 9 Nov 2018 09:27:28 -0800
Subject: [PATCH 0900/1129] cudatoolkit: build versions 9.2+ with gcc7

closes issue #50040
---
 pkgs/development/compilers/cudatoolkit/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/compilers/cudatoolkit/default.nix b/pkgs/development/compilers/cudatoolkit/default.nix
index 7a062a552150..6fdbde242f32 100644
--- a/pkgs/development/compilers/cudatoolkit/default.nix
+++ b/pkgs/development/compilers/cudatoolkit/default.nix
@@ -1,5 +1,5 @@
 { lib, stdenv, makeWrapper, fetchurl, requireFile, perl, ncurses, expat, python27, zlib
-, gcc48, gcc49, gcc5, gcc6
+, gcc48, gcc49, gcc5, gcc6, gcc7
 , xorg, gtk2, glib, fontconfig, freetype, unixODBC, alsaLib, glibc
 }:
 
@@ -229,7 +229,7 @@ in rec {
         sha256 = "1kx6l4yzsamk6q1f4vllcpywhbfr2j5wfl4h5zx8v6dgfpsjm2lw";
       })
     ];
-    gcc = gcc6;
+    gcc = gcc7;
   };
 
   cudatoolkit_9 = cudatoolkit_9_2;
@@ -239,7 +239,7 @@ in rec {
     url = "https://developer.nvidia.com/compute/cuda/10.0/Prod/local_installers/cuda_10.0.130_410.48_linux";
     sha256 = "16p3bv1lwmyqpxil8r951h385sy9asc578afrc7lssa68c71ydcj";
 
-    gcc = gcc6;
+    gcc = gcc7;
   };
 
   cudatoolkit_10 = cudatoolkit_10_0;

From 3de237efb19486bc21c21d032a6731a6ab7c735e Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 02:19:30 -0800
Subject: [PATCH 0901/1129] debootstrap: 1.0.109 -> 1.0.110

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/debootstrap/versions
---
 pkgs/tools/misc/debootstrap/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/misc/debootstrap/default.nix b/pkgs/tools/misc/debootstrap/default.nix
index 9c3db47213ec..1b2cdf0402ae 100644
--- a/pkgs/tools/misc/debootstrap/default.nix
+++ b/pkgs/tools/misc/debootstrap/default.nix
@@ -15,13 +15,13 @@ let binPath = stdenv.lib.makeBinPath [
   ];
 in stdenv.mkDerivation rec {
   name = "debootstrap-${version}";
-  version = "1.0.109";
+  version = "1.0.110";
 
   src = fetchurl {
     # git clone git://git.debian.org/d-i/debootstrap.git
     # I'd like to use the source. However it's lacking the lanny script ? (still true?)
     url = "mirror://debian/pool/main/d/debootstrap/debootstrap_${version}.tar.gz";
-    sha256 = "117xgrv6mpszyndmsvkn4ynh57b2s40qc68bpmfmxggw58j42klw";
+    sha256 = "11bqy2dbqsy9fyx1i6lj0aj1pvq15y8kkwjfrp18k3nvy74y80ca";
   };
 
   nativeBuildInputs = [ makeWrapper ];

From f3545ef3c8758679d95e1bff818eadff40955d5e Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 02:23:09 -0800
Subject: [PATCH 0902/1129] cryptsetup: 2.0.4 -> 2.0.5

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/cryptsetup/versions
---
 pkgs/os-specific/linux/cryptsetup/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/cryptsetup/default.nix b/pkgs/os-specific/linux/cryptsetup/default.nix
index 4eec4754ca9a..ea255181e016 100644
--- a/pkgs/os-specific/linux/cryptsetup/default.nix
+++ b/pkgs/os-specific/linux/cryptsetup/default.nix
@@ -5,13 +5,13 @@
 assert enablePython -> python2 != null;
 
 stdenv.mkDerivation rec {
-  name = "cryptsetup-2.0.4";
+  name = "cryptsetup-2.0.5";
 
   outputs = [ "out" "dev" "man" ];
 
   src = fetchurl {
     url = "mirror://kernel/linux/utils/cryptsetup/v2.0/${name}.tar.xz";
-    sha256 = "0d2p9g2wqcv6l3671gvw96p16jadbgyh21ddy2bhqgi96dq3qflx";
+    sha256 = "079hzvjyzbzaakzvqc1fmciwlzllzqyl2949viasb994r2i2rxx0";
   };
 
   # Disable 4 test cases that fail in a sandbox

From 23e66b362d790392bc7b95936b06815c07b0a9e2 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Dominik=20Xaver=20H=C3=B6rl?= <hoe.dom@gmx.de>
Date: Sat, 10 Nov 2018 11:27:28 +0100
Subject: [PATCH 0903/1129] android-file-transfer: 3.5 -> 3.6

---
 pkgs/tools/filesystems/android-file-transfer/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/filesystems/android-file-transfer/default.nix b/pkgs/tools/filesystems/android-file-transfer/default.nix
index 336dc785bbfd..c3a0c46d5eca 100644
--- a/pkgs/tools/filesystems/android-file-transfer/default.nix
+++ b/pkgs/tools/filesystems/android-file-transfer/default.nix
@@ -2,12 +2,12 @@
 
 stdenv.mkDerivation rec {
   name = "android-file-transfer-${version}";
-  version = "3.5";
+  version = "3.6";
   src = fetchFromGitHub {
     owner = "whoozle";
     repo = "android-file-transfer-linux";
     rev = "v${version}";
-    sha256 = "036hca41ikgnw4maykjdp53l31rm01mgamy9y56i5qqh84cwmls2";
+    sha256 = "0gaj1shmd62ks4cjdcmiqczlr93v8ivjcg0l6s8z73cz9pf8dxmz";
   };
   buildInputs = [ cmake fuse readline pkgconfig qtbase ];
   buildPhase = ''

From 00370bc77abce80f9e86aadccc30a6d2bc891ed1 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 02:28:20 -0800
Subject: [PATCH 0904/1129] chromedriver: 2.42 -> 2.43

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/chromedriver/versions
---
 pkgs/development/tools/selenium/chromedriver/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/tools/selenium/chromedriver/default.nix b/pkgs/development/tools/selenium/chromedriver/default.nix
index b19bd67c307f..4ba5abc65e30 100644
--- a/pkgs/development/tools/selenium/chromedriver/default.nix
+++ b/pkgs/development/tools/selenium/chromedriver/default.nix
@@ -6,7 +6,7 @@ let
   allSpecs = {
     "x86_64-linux" = {
       system = "linux64";
-      sha256 = "10phyz7ffzzx5ysbpyidssvwjdrcyszxf3lnba8qsrcajzm21nff";
+      sha256 = "0x45d2fq01w5v28vipvl4g37ld7d9m8rij9dnwq2zcvyz0rfdfmk";
     };
 
     "x86_64-darwin" = {
@@ -28,7 +28,7 @@ let
 in
 stdenv.mkDerivation rec {
   name = "chromedriver-${version}";
-  version = "2.42";
+  version = "2.43";
 
   src = fetchurl {
     url = "https://chromedriver.storage.googleapis.com/${version}/chromedriver_${spec.system}.zip";

From 1afd25fb4a402a3e71a0228e146507cfe977dcd4 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Sat, 10 Nov 2018 12:08:07 +0100
Subject: [PATCH 0905/1129] getmail: 5.7 -> 5.8

---
 pkgs/tools/networking/getmail/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/networking/getmail/default.nix b/pkgs/tools/networking/getmail/default.nix
index 56b7320a1b26..db1f383ac026 100644
--- a/pkgs/tools/networking/getmail/default.nix
+++ b/pkgs/tools/networking/getmail/default.nix
@@ -2,11 +2,11 @@
 
 python2Packages.buildPythonApplication rec {
   pname = "getmail";
-  version = "5.7";
+  version = "5.8";
 
   src = fetchurl {
     url = "http://pyropus.ca/software/getmail/old-versions/${pname}-${version}.tar.gz";
-    sha256 = "1ygv78ihjyrh60657bl8pc17a5dqawdkfh32h8hrd4kwwxlsd5r4";
+    sha256 = "0vl4cc733pd9d21y4pr4jc1ly657d0akxj1bdh1xfjggx33l3541";
   };
 
   doCheck = false;

From 2e9aa645164df88ab4cd59d91fe437d3ae6dbecb Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 03:27:42 -0800
Subject: [PATCH 0906/1129] acpica-tools: 20180927 -> 20181031

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/acpica-tools/versions
---
 pkgs/tools/system/acpica-tools/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/system/acpica-tools/default.nix b/pkgs/tools/system/acpica-tools/default.nix
index 54303d0c177d..5bc8c7d945bd 100644
--- a/pkgs/tools/system/acpica-tools/default.nix
+++ b/pkgs/tools/system/acpica-tools/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "acpica-tools-${version}";
-  version = "20180927";
+  version = "20181031";
 
   src = fetchurl {
     url = "https://acpica.org/sites/acpica/files/acpica-unix-${version}.tar.gz";
-    sha256 = "1c9d505mw1wyga65y4nmiz55gs357z97wnycx77yvjwvi08qsh6w";
+    sha256 = "1zz1lfrl1rihs47a0cirdp32p53297kjm0l27b4kvibb5b7pa3h9";
   };
 
   NIX_CFLAGS_COMPILE = "-O3";

From 948e260117fc7c041a76a55372e2a6d307bd48c2 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Sat, 10 Nov 2018 13:08:59 +0100
Subject: [PATCH 0907/1129] openmpi: 3.1.2 -> 3.1.3

---
 pkgs/development/libraries/openmpi/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/openmpi/default.nix b/pkgs/development/libraries/openmpi/default.nix
index b5651e8f02ad..c98249e89c4d 100644
--- a/pkgs/development/libraries/openmpi/default.nix
+++ b/pkgs/development/libraries/openmpi/default.nix
@@ -10,14 +10,14 @@
 
 let
   majorVersion = "3.1";
-  minorVersion = "2";
+  minorVersion = "3";
 
 in stdenv.mkDerivation rec {
   name = "openmpi-${majorVersion}.${minorVersion}";
 
   src = fetchurl {
     url = "http://www.open-mpi.org/software/ompi/v${majorVersion}/downloads/${name}.tar.bz2";
-    sha256 = "1ibniapqki763agpfh65y284las083fqmj8m5b2pi8ilgy2fsm66";
+    sha256 = "1dks11scivgaskjs5955y9wprsl12wr3gn5r7wfl0l8gq03l7q4b";
   };
 
   postPatch = ''

From b318ed39070d722736c3886a6b24bf06213fb84d Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Fri, 9 Nov 2018 12:35:07 -0800
Subject: [PATCH 0908/1129] libqalculate: 2.6.2 -> 2.8.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/libqalculate/versions
---
 pkgs/development/libraries/libqalculate/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/libqalculate/default.nix b/pkgs/development/libraries/libqalculate/default.nix
index 2c25d4181196..bb823f69135a 100644
--- a/pkgs/development/libraries/libqalculate/default.nix
+++ b/pkgs/development/libraries/libqalculate/default.nix
@@ -3,13 +3,13 @@
 
 stdenv.mkDerivation rec {
   name = "libqalculate-${version}";
-  version = "2.6.2";
+  version = "2.8.1";
 
   src = fetchFromGitHub {
     owner = "qalculate";
     repo = "libqalculate";
     rev = "v${version}";
-    sha256 = "1wfffki5ib65z9ndph2c4a17qx62f07q12adzabs7ij9gv94y9j5";
+    sha256 = "1fakvv5vvx99pp5x72djp3313jxjwfhsl34gbyrpgkj5b4nnm7mz";
   };
 
   outputs = [ "out" "dev" "doc" ];

From 5f2a7607facfa78ac772efd7b04442b634782bc0 Mon Sep 17 00:00:00 2001
From: Gabriel Ebner <gebner@gebner.org>
Date: Sat, 10 Nov 2018 13:16:49 +0100
Subject: [PATCH 0909/1129] qalculate-gtk: 2.6.2 -> 2.8.1

---
 pkgs/applications/science/math/qalculate-gtk/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/science/math/qalculate-gtk/default.nix b/pkgs/applications/science/math/qalculate-gtk/default.nix
index 59dbfdb509dc..7cd22f22a4e7 100644
--- a/pkgs/applications/science/math/qalculate-gtk/default.nix
+++ b/pkgs/applications/science/math/qalculate-gtk/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "qalculate-gtk-${version}";
-  version = "2.6.2";
+  version = "2.8.1";
 
   src = fetchFromGitHub {
     owner = "qalculate";
     repo = "qalculate-gtk";
     rev = "v${version}";
-    sha256 = "1yzw6avhka7bbi071z9d8cipcghyjq2bg9x3arv1cf395xlnrmb9";
+    sha256 = "029yq9db2rm4fy83c11aynxjsd6vvi7ffamaf9zvkkamqqj1sjlf";
   };
 
   patchPhase = ''

From 90ad9dc646d9f07d760e6f757c61d1154f076316 Mon Sep 17 00:00:00 2001
From: Silvan Mosberger <infinisil@icloud.com>
Date: Sat, 10 Nov 2018 04:32:23 +0100
Subject: [PATCH 0910/1129] .github/CODEOWNERS: Add infinisil to NixOS modules

---
 .github/CODEOWNERS | 3 +++
 1 file changed, 3 insertions(+)

diff --git a/.github/CODEOWNERS b/.github/CODEOWNERS
index 17b830e5fad0..5c2b495fa8e1 100644
--- a/.github/CODEOWNERS
+++ b/.github/CODEOWNERS
@@ -47,6 +47,9 @@
 /nixos/doc/manual/man-nixos-option.xml                @nbp
 /nixos/modules/installer/tools/nixos-option.sh        @nbp
 
+# NixOS modules
+/nixos/modules @Infinisil
+
 # Python-related code and docs
 /maintainers/scripts/update-python-libraries	@FRidh
 /pkgs/top-level/python-packages.nix     @FRidh

From 3b70c6df486bca6efdacb66f72ad59c04a45a154 Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sat, 10 Nov 2018 14:06:12 +0100
Subject: [PATCH 0911/1129] =?UTF-8?q?babl:=200.1.58=20=E2=86=92=200.1.60?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 pkgs/development/libraries/babl/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/babl/default.nix b/pkgs/development/libraries/babl/default.nix
index 027b86a97747..4c942cac3f69 100644
--- a/pkgs/development/libraries/babl/default.nix
+++ b/pkgs/development/libraries/babl/default.nix
@@ -1,11 +1,11 @@
 { stdenv, fetchurl }:
 
 stdenv.mkDerivation rec {
-  name = "babl-0.1.58";
+  name = "babl-0.1.60";
 
   src = fetchurl {
     url = "https://ftp.gtk.org/pub/babl/0.1/${name}.tar.bz2";
-    sha256 = "0mgdii9v89ay0nra36cz9i0q7cqv8wi8hk01jsc4bf0rc1bsxjbr";
+    sha256 = "0kv0y12j4k9khrxqa7rryfb4ikcnrax6x4nwi70wnz05nv6fxld3";
   };
 
   doCheck = true;

From 47d439addd3196358a30a57c636a1c4c714ef22d Mon Sep 17 00:00:00 2001
From: Jan Tojnar <jtojnar@gmail.com>
Date: Sat, 10 Nov 2018 14:06:34 +0100
Subject: [PATCH 0912/1129] =?UTF-8?q?gimp:=202.10.6=20=E2=86=92=202.10.8?=
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

---
 pkgs/applications/graphics/gimp/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/graphics/gimp/default.nix b/pkgs/applications/graphics/gimp/default.nix
index 15033b8b2b09..4491c18df6a7 100644
--- a/pkgs/applications/graphics/gimp/default.nix
+++ b/pkgs/applications/graphics/gimp/default.nix
@@ -9,11 +9,11 @@ let
   inherit (python2Packages) pygtk wrapPython python;
 in stdenv.mkDerivation rec {
   name = "gimp-${version}";
-  version = "2.10.6";
+  version = "2.10.8";
 
   src = fetchurl {
     url = "http://download.gimp.org/pub/gimp/v${stdenv.lib.versions.majorMinor version}/${name}.tar.bz2";
-    sha256 = "07qh2ljbza2mph1gh8sicn27qihhj8hx3ivvry2874cfh8ghgj2f";
+    sha256 = "16sb4kslwin2jbgdb4nhks78pd0af8mvj8g5hap3hj946p7w2jfq";
   };
 
   nativeBuildInputs = [ pkgconfig intltool gettext wrapPython ];

From 698ad2dd4db9a8e8d32e9d875d52916f81e62d08 Mon Sep 17 00:00:00 2001
From: Gabriel Ebner <gebner@gebner.org>
Date: Sat, 10 Nov 2018 14:15:27 +0100
Subject: [PATCH 0913/1129] nasc: 0.5.0 -> 0.5.1

---
 pkgs/applications/science/math/nasc/default.nix | 13 ++++++++-----
 1 file changed, 8 insertions(+), 5 deletions(-)

diff --git a/pkgs/applications/science/math/nasc/default.nix b/pkgs/applications/science/math/nasc/default.nix
index bba08e3ae291..73fa2a5e678c 100644
--- a/pkgs/applications/science/math/nasc/default.nix
+++ b/pkgs/applications/science/math/nasc/default.nix
@@ -6,7 +6,6 @@
 , granite
 , gnome3
 , cmake
-, ninja
 , vala_0_40
 , libqalculate
 , gobjectIntrospection
@@ -14,24 +13,28 @@
 
 stdenv.mkDerivation rec {
   name = "nasc-${version}";
-  version = "0.5.0";
+  version = "0.5.1";
 
   src = fetchFromGitHub {
     owner = "parnold-x";
     repo = "nasc";
     rev = version;
-    sha256 = "1rrp3djsv7lrgsqjn7x50msv0c5ffhz90lj1v11di0kp05m6q9j9";
+    sha256 = "13y5fnm7g3xgdxmdydlgly73nigh8maqbf9d6c9bpyzxkxq1csy5";
   };
 
+  postPatch = ''
+    # libqalculatenasc.so is not installed, and nasc fails to start
+    substituteInPlace libqalculatenasc/CMakeLists.txt --replace SHARED STATIC
+  '';
+
   nativeBuildInputs = [
     pkgconfig
     wrapGAppsHook
     vala_0_40 # should be `elementary.vala` when elementary attribute set is merged
     cmake
-    ninja
     gobjectIntrospection # for setup-hook
   ];
-  
+
   buildInputs = [
     gnome3.defaultIconTheme # should be `elementary.defaultIconTheme`when elementary attribute set is merged
     gnome3.gtksourceview

From 2ebfacd249476b7454c3c0daebc4f1b59027b0d7 Mon Sep 17 00:00:00 2001
From: Silvan Mosberger <infinisil@icloud.com>
Date: Sat, 10 Nov 2018 14:25:41 +0100
Subject: [PATCH 0914/1129] opencpn: Set platforms to x86_64-linux exclusively

Other platforms are failing
---
 pkgs/applications/misc/opencpn/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/applications/misc/opencpn/default.nix b/pkgs/applications/misc/opencpn/default.nix
index 295e54518c88..120d3a82b5e9 100644
--- a/pkgs/applications/misc/opencpn/default.nix
+++ b/pkgs/applications/misc/opencpn/default.nix
@@ -26,7 +26,7 @@ stdenv.mkDerivation rec {
   meta = {
     description = "A concise ChartPlotter/Navigator";
     maintainers = [ stdenv.lib.maintainers.kragniz ];
-    platforms = stdenv.lib.platforms.all;
+    platforms = [ "x86_64-linux" ];
     license = stdenv.lib.licenses.gpl2;
     homepage = https://opencpn.org/;
   };

From 8b653bffa53f722a39205f6656d4f05f321bce69 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 05:45:56 -0800
Subject: [PATCH 0915/1129] appstream-glib: 0.7.13 -> 0.7.14

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/appstream-glib/versions
---
 pkgs/development/libraries/appstream-glib/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/appstream-glib/default.nix b/pkgs/development/libraries/appstream-glib/default.nix
index 2aacfd07364f..831d0cc0f713 100644
--- a/pkgs/development/libraries/appstream-glib/default.nix
+++ b/pkgs/development/libraries/appstream-glib/default.nix
@@ -4,7 +4,7 @@
 , libuuid, json-glib, meson, gperf, ninja
 }:
 stdenv.mkDerivation rec {
-  name = "appstream-glib-0.7.13";
+  name = "appstream-glib-0.7.14";
 
   outputs = [ "out" "dev" "man" "installedTests" ];
   outputBin = "dev";
@@ -13,7 +13,7 @@ stdenv.mkDerivation rec {
     owner = "hughsie";
     repo = "appstream-glib";
     rev = stdenv.lib.replaceStrings ["." "-"] ["_" "_"] name;
-    sha256 = "0r1gb806p68axspzwvpn1ygmd6pfc17mncg3i6yazk3n10k5cl06";
+    sha256 = "1908ilra1l0m2a224azmj6p4yglzdwwk41rr6rhby959sgw3iaky";
   };
 
   nativeBuildInputs = [

From b5179c6d1a3234b142351a4f10e3bba18c3ba4cd Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 05:48:26 -0800
Subject: [PATCH 0916/1129] lynis: 2.6.9 -> 2.7.0 (#50045)

* lynis: 2.6.9 -> 2.7.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/lynis/versions

* lynis: remove perl and create plugins subdir
---
 pkgs/tools/security/lynis/default.nix | 13 +++++--------
 1 file changed, 5 insertions(+), 8 deletions(-)

diff --git a/pkgs/tools/security/lynis/default.nix b/pkgs/tools/security/lynis/default.nix
index ad345afb5fcc..46c2e6f03b0d 100644
--- a/pkgs/tools/security/lynis/default.nix
+++ b/pkgs/tools/security/lynis/default.nix
@@ -1,29 +1,26 @@
-{ stdenv, makeWrapper, fetchFromGitHub, gawk, perl }:
+{ stdenv, makeWrapper, fetchFromGitHub, gawk }:
 
 stdenv.mkDerivation rec {
   pname = "lynis";
-  version = "2.6.9";
+  version = "2.7.0";
   name = "${pname}-${version}";
 
   src = fetchFromGitHub {
     owner = "CISOfy";
     repo = "${pname}";
     rev = "${version}";
-    sha256 = "125p5vpc2ksn0nab8y4ckfgx13rlv3w95amgighiqkh15ccji5kq";
+    sha256 = "0rzc0y8lk22bymf56249jzmllki2lh0rz5in4lkrc5fkmp29c2wv";
   };
 
-  nativeBuildInputs = [ makeWrapper perl ];
+  nativeBuildInputs = [ makeWrapper ];
 
   postPatch = ''
     grep -rl '/usr/local/lynis' ./ | xargs sed -i "s@/usr/local/lynis@$out/share/lynis@g"
-    # Don't use predefined binary paths. See https://github.com/CISOfy/lynis/issues/468
-    perl -i -p0e 's/BIN_PATHS="[^"]*"/BIN_PATHS=\$\(echo \$PATH\ | sed "s\/:\/ \/g")/sm;' include/consts
   '';
 
   installPhase = ''
-    mkdir -p $out/share/lynis
+    install -d $out/bin $out/share/lynis/plugins
     cp -r include db default.prf $out/share/lynis/
-    mkdir -p $out/bin
     cp -a lynis $out/bin
     wrapProgram "$out/bin/lynis" --prefix PATH : ${stdenv.lib.makeBinPath [ gawk ]}
   '';

From 1ec2eb8b7b21f8414c6b937c9fd38f0bce616c14 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 05:51:28 -0800
Subject: [PATCH 0917/1129] aha: 0.4.10.6 -> 0.5

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/aha/versions
---
 pkgs/tools/text/aha/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/text/aha/default.nix b/pkgs/tools/text/aha/default.nix
index 89319ac492f4..f53a649cd771 100644
--- a/pkgs/tools/text/aha/default.nix
+++ b/pkgs/tools/text/aha/default.nix
@@ -2,10 +2,10 @@
 
 stdenv.mkDerivation rec {
   name = "aha-${version}";
-  version = "0.4.10.6";
+  version = "0.5";
 
   src = fetchFromGitHub {
-    sha256 = "18mz3f5aqw4vbdrxf8wblqm6nca73ppq9hb2z2ppw6k0557i71kz";
+    sha256 = "0byml4rmpiaalwx69jcixl3yvpvwmwiss1jzgsqwshilb2p4qnmz";
     rev = version;
     repo = "aha";
     owner = "theZiz";

From 67f3cd2831cf06a547616574f1795e997ebec2af Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Tue, 6 Nov 2018 19:12:45 +0000
Subject: [PATCH 0918/1129] radare2: 3.0.0 -> 3.0.1

---
 pkgs/development/tools/analysis/radare2/default.nix | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/pkgs/development/tools/analysis/radare2/default.nix b/pkgs/development/tools/analysis/radare2/default.nix
index 2f0878da8c6f..0381dc85895f 100644
--- a/pkgs/development/tools/analysis/radare2/default.nix
+++ b/pkgs/development/tools/analysis/radare2/default.nix
@@ -90,12 +90,12 @@ in {
   #<generated>
   # DO NOT EDIT! Automatically generated by ./update.py
   radare2 = generic {
-    version_commit = "19720";
-    gittap = "3.0.0";
-    gittip = "13e3ebd2aa6653eb5b6bdd65a93dcddf3550fcfa";
-    rev = "3.0.0";
-    version = "3.0.0";
-    sha256 = "0awbk9v7qjkarscaqzyly310f04dxgndxvxwxbjrsswqlp206b40";
+    version_commit = "19915";
+    gittap = "3.0.1";
+    gittip = "addb7f21e73073600fd6205e385fa096084701f5";
+    rev = "3.0.1";
+    version = "3.0.1";
+    sha256 = "0da4ns11valy305074cri3in5zcafjw3vxc53b4yg37114ly433h";
     cs_tip = "e2c1cd46c06744beaceff42dd882de3a90f0a37c";
     cs_sha256 = "1czzqj8zdjgh7h2ixi26ij3mm4bgm4xw2slin6fv73nic8yaw722";
   };

From b7b2d9cd6c0e5c9e57eeaaf453398af72579307e Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 06:04:14 -0800
Subject: [PATCH 0919/1129] python36Packages.brotli: 1.0.5 -> 1.0.7 (#50169)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-brotli/versions
---
 pkgs/development/python-modules/brotli/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/brotli/default.nix b/pkgs/development/python-modules/brotli/default.nix
index 5366eeb9c232..35b40a3adf1c 100644
--- a/pkgs/development/python-modules/brotli/default.nix
+++ b/pkgs/development/python-modules/brotli/default.nix
@@ -2,14 +2,14 @@
 
 buildPythonPackage rec {
   pname = "brotli";
-  version = "1.0.5";
+  version = "1.0.7";
 
   # PyPI doesn't contain tests so let's use GitHub
   src = fetchFromGitHub {
     owner = "google";
     repo = pname;
     rev = "v${version}";
-    sha256 = "0ssj7mnhpdpk7qnwr49qfd4gxhkmvbli5mhs274pz55cx1xp7xja";
+    sha256 = "1811b55wdfg4kbsjcgh1kc938g118jpvif97ilgrmbls25dfpvvw";
   };
 
   checkInputs = [ pytest ];

From ec490362673387e1afa5587d47cc787f6fb35258 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 06:05:16 -0800
Subject: [PATCH 0920/1129] btrfs-progs: 4.17.1 -> 4.19

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/btrfs-progs/versions
---
 pkgs/tools/filesystems/btrfs-progs/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/filesystems/btrfs-progs/default.nix b/pkgs/tools/filesystems/btrfs-progs/default.nix
index 42f27e69f38e..252f25ad8fa8 100644
--- a/pkgs/tools/filesystems/btrfs-progs/default.nix
+++ b/pkgs/tools/filesystems/btrfs-progs/default.nix
@@ -4,11 +4,11 @@
 
 stdenv.mkDerivation rec {
   name = "btrfs-progs-${version}";
-  version = "4.17.1";
+  version = "4.19";
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/people/kdave/btrfs-progs/btrfs-progs-v${version}.tar.xz";
-    sha256 = "0x6d53fbrcmzvhv461575fzsv3373427p4srz646w2wcagqk82xz";
+    sha256 = "0jd3bsg3117ysr82n03w33sqw1g9z1ciixcxrwgp90yghvjzp4fm";
   };
 
   nativeBuildInputs = [

From 27f64b145a2871ab4b221d930fd1150bec4a15aa Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 06:18:53 -0800
Subject: [PATCH 0921/1129] fanficfare: 3.0.0 -> 3.1.1 (#50128)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/fanficfare/versions
---
 pkgs/tools/text/fanficfare/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/text/fanficfare/default.nix b/pkgs/tools/text/fanficfare/default.nix
index 1dec03e985b3..3315d435afbb 100644
--- a/pkgs/tools/text/fanficfare/default.nix
+++ b/pkgs/tools/text/fanficfare/default.nix
@@ -1,13 +1,13 @@
 { stdenv, fetchurl, python27Packages }:
 
 python27Packages.buildPythonApplication rec {
-  version = "3.0.0";
+  version = "3.1.1";
   name = "fanficfare-${version}";
   nameprefix = "";
 
   src = fetchurl {
     url = "https://github.com/JimmXinu/FanFicFare/archive/v${version}.tar.gz";
-    sha256 = "0m8p1nn4621fspcas4g4k8y6fnnlzn7kxjxw2fapdrk3cz1pgi69";
+    sha256 = "1wklii24vbvq2vi5pqgp3z4lazcplh2i7r2w4d8lkm6pzbw0s8px";
   };
 
   propagatedBuildInputs = with python27Packages; [ beautifulsoup4 chardet html5lib html2text ];

From 9fe5089fd3b07d7933ae8e9d743d4c9fb19b6c1f Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 06:19:27 -0800
Subject: [PATCH 0922/1129] gdcm: 2.8.7 -> 2.8.8 (#50126)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/gdcm/versions
---
 pkgs/development/libraries/gdcm/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/gdcm/default.nix b/pkgs/development/libraries/gdcm/default.nix
index cba31f45d557..91c384b249a4 100644
--- a/pkgs/development/libraries/gdcm/default.nix
+++ b/pkgs/development/libraries/gdcm/default.nix
@@ -1,12 +1,12 @@
 { stdenv, fetchurl, cmake, vtk }:
 
 stdenv.mkDerivation rec {
-  version = "2.8.7";
+  version = "2.8.8";
   name = "gdcm-${version}";
 
   src = fetchurl {
     url = "mirror://sourceforge/gdcm/${name}.tar.bz2";
-    sha256 = "1psl4r0i3hfhjjm9y8q5ml9lnlal4212bm8df21087dddi9nfl62";
+    sha256 = "1iwfrk04sd22wkr1ivbg8gixl34fv9zfzwnfqvrq121nadb0s29b";
   };
 
   dontUseCmakeBuildDir = true;

From 70ef844c4ded36265f90fc447a63dc7a7a6758dc Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 06:20:02 -0800
Subject: [PATCH 0923/1129] eid-mw: 4.4.8 -> 4.4.9 (#50123)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/eid-mw/versions
---
 pkgs/tools/security/eid-mw/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/security/eid-mw/default.nix b/pkgs/tools/security/eid-mw/default.nix
index cc61cce463ce..637d2af9ae31 100644
--- a/pkgs/tools/security/eid-mw/default.nix
+++ b/pkgs/tools/security/eid-mw/default.nix
@@ -7,10 +7,10 @@
 
 stdenv.mkDerivation rec {
   name = "eid-mw-${version}";
-  version = "4.4.8";
+  version = "4.4.9";
 
   src = fetchFromGitHub {
-    sha256 = "0khpkpfnbin46aqnb9xkhh5d89lvsshgp4kqpdgk95l73lx8kdqp"; 
+    sha256 = "019cfxgffl6z6ilz1w6b531dr8pi63ikflxmkc95glh7cxsaylax"; 
     rev = "v${version}";
     repo = "eid-mw";
     owner = "Fedict";

From 02693e327aac3bb7ee85b0c1fb81e5da883ea9b2 Mon Sep 17 00:00:00 2001
From: Renaud <c0bw3b@users.noreply.github.com>
Date: Sat, 10 Nov 2018 15:20:54 +0100
Subject: [PATCH 0924/1129] pdns-recursor: 4.1.4 -> 4.1.7

PowerDNS Security Advisory 2018-04 (CVE-2018-10851)
PowerDNS Security Advisory 2018-06 (CVE-2018-14626)
PowerDNS Security Advisory 2018-07 (CVE-2018-14644)
---
 pkgs/servers/dns/pdns-recursor/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/dns/pdns-recursor/default.nix b/pkgs/servers/dns/pdns-recursor/default.nix
index 933609ac268a..1f8429a60d1b 100644
--- a/pkgs/servers/dns/pdns-recursor/default.nix
+++ b/pkgs/servers/dns/pdns-recursor/default.nix
@@ -8,11 +8,11 @@ with stdenv.lib;
 
 stdenv.mkDerivation rec {
   name = "pdns-recursor-${version}";
-  version = "4.1.4";
+  version = "4.1.7";
 
   src = fetchurl {
     url = "https://downloads.powerdns.com/releases/pdns-recursor-${version}.tar.bz2";
-    sha256 = "0l5mf45r3x1z5mg95zpbyms88zv307hsrrx4h6jm9zm3pr9l77xi";
+    sha256 = "0syvxlfxy3h2x1kvqkj7qqk8k85y42qjq30pcqqmy69v3pymq14s";
   };
 
   nativeBuildInputs = [ pkgconfig ];

From e5508a4f2817885fde9289593ceee5058060410d Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 06:22:41 -0800
Subject: [PATCH 0925/1129] earlyoom: 1.1 -> 1.2 (#50119)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/earlyoom/versions
---
 pkgs/os-specific/linux/earlyoom/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/earlyoom/default.nix b/pkgs/os-specific/linux/earlyoom/default.nix
index 0c2f1a872fd9..5154f68cde4e 100644
--- a/pkgs/os-specific/linux/earlyoom/default.nix
+++ b/pkgs/os-specific/linux/earlyoom/default.nix
@@ -3,13 +3,13 @@
 stdenv.mkDerivation rec {
   name = "earlyoom-${VERSION}";
   # This environment variable is read by make to set the build version.
-  VERSION = "1.1";
+  VERSION = "1.2";
 
   src = fetchFromGitHub {
     owner = "rfjakob";
     repo = "earlyoom";
     rev = "v${VERSION}";
-    sha256 = "1hczn59mmx287hnlhcmpxrf3jy3arllif165dq7b2ha6w3ywngww";
+    sha256 = "0bpqlbsjcmcizgw75j1zyw1sp2cgwhaar9y70sibw1km011yqbzd";
   };
 
   installPhase = ''

From 287db0f9b97789606c63974487c6a5c2b7467ef4 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 30 Oct 2018 19:17:45 -0300
Subject: [PATCH 0926/1129] deepin: add update script

---
 pkgs/desktops/deepin/dbus-factory/default.nix |  4 +-
 pkgs/desktops/deepin/dde-api/default.nix      |  9 +++--
 pkgs/desktops/deepin/dde-calendar/default.nix |  4 +-
 pkgs/desktops/deepin/dde-daemon/default.nix   |  4 +-
 .../deepin/dde-polkit-agent/default.nix       |  4 +-
 .../deepin/dde-qt-dbus-factory/default.nix    |  4 +-
 .../deepin/dde-session-ui/default.nix         |  4 +-
 .../deepin/deepin-desktop-base/default.nix    |  4 +-
 .../deepin/deepin-desktop-schemas/default.nix |  5 ++-
 .../deepin/deepin-gettext-tools/default.nix   |  4 +-
 .../deepin/deepin-gtk-theme/default.nix       |  7 +++-
 .../deepin/deepin-icon-theme/default.nix      |  4 +-
 .../deepin/deepin-image-viewer/default.nix    |  4 +-
 pkgs/desktops/deepin/deepin-menu/default.nix  |  4 +-
 .../deepin/deepin-metacity/default.nix        |  4 +-
 .../deepin/deepin-movie-reborn/default.nix    |  4 +-
 .../desktops/deepin/deepin-mutter/default.nix |  5 ++-
 .../deepin/deepin-shortcut-viewer/default.nix |  5 ++-
 .../deepin/deepin-sound-theme/default.nix     |  7 +++-
 .../deepin/deepin-terminal/default.nix        |  9 +++--
 .../deepin/deepin-wallpapers/default.nix      |  7 +++-
 pkgs/desktops/deepin/deepin-wm/default.nix    |  4 +-
 pkgs/desktops/deepin/default.nix              |  1 +
 .../deepin/dpa-ext-gnomekeyring/default.nix   |  5 ++-
 pkgs/desktops/deepin/dtkcore/default.nix      |  4 +-
 pkgs/desktops/deepin/dtkwidget/default.nix    |  5 ++-
 pkgs/desktops/deepin/dtkwm/default.nix        |  5 ++-
 .../deepin/go-dbus-factory/default.nix        |  4 +-
 .../deepin/go-dbus-generator/default.nix      |  4 +-
 .../deepin/go-gir-generator/default.nix       |  5 ++-
 pkgs/desktops/deepin/go-lib/default.nix       |  5 ++-
 .../deepin/qt5dxcb-plugin/default.nix         |  5 ++-
 .../deepin/qt5integration/default.nix         |  9 +++--
 pkgs/desktops/deepin/update.nix               | 37 +++++++++++++++++++
 34 files changed, 153 insertions(+), 46 deletions(-)
 create mode 100644 pkgs/desktops/deepin/update.nix

diff --git a/pkgs/desktops/deepin/dbus-factory/default.nix b/pkgs/desktops/deepin/dbus-factory/default.nix
index 610e367b09f8..3c99c40ee807 100644
--- a/pkgs/desktops/deepin/dbus-factory/default.nix
+++ b/pkgs/desktops/deepin/dbus-factory/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, jq, libxml2, go-dbus-generator }:
+{ stdenv, fetchFromGitHub, jq, libxml2, go-dbus-generator, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -24,6 +24,8 @@ stdenv.mkDerivation rec {
     sed -i -e 's:/share/gocode:/share/go:' Makefile
   '';
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Generates static DBus bindings for Golang and QML at build-time";
     homepage = https://github.com/linuxdeepin/dbus-factory;
diff --git a/pkgs/desktops/deepin/dde-api/default.nix b/pkgs/desktops/deepin/dde-api/default.nix
index d8452e5f7a38..9e25d0314401 100644
--- a/pkgs/desktops/deepin/dde-api/default.nix
+++ b/pkgs/desktops/deepin/dde-api/default.nix
@@ -1,6 +1,7 @@
-{ stdenv, buildGoPackage, fetchFromGitHub, pkgconfig,
-go-gir-generator, glib, gtk3, poppler, librsvg, pulseaudio, alsaLib,
-libcanberra, gnome3, deepin-gettext-tools, go }:
+{ stdenv, buildGoPackage, fetchFromGitHub, pkgconfig ,
+  go-gir-generator, glib, gtk3, poppler, librsvg, pulseaudio, alsaLib,
+  libcanberra, gnome3, deepin-gettext-tools, go, deepin
+}:
 
 buildGoPackage rec {
   name = "${pname}-${version}";
@@ -50,6 +51,8 @@ buildGoPackage rec {
     remove-references-to -t ${go} $bin/bin/* $bin/lib/deepin-api/*
   '';
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Go-lang bindings for dde-daemon";
     homepage = https://github.com/linuxdeepin/dde-api;
diff --git a/pkgs/desktops/deepin/dde-calendar/default.nix b/pkgs/desktops/deepin/dde-calendar/default.nix
index ad6b0f1912a6..6d0abab2100f 100644
--- a/pkgs/desktops/deepin/dde-calendar/default.nix
+++ b/pkgs/desktops/deepin/dde-calendar/default.nix
@@ -1,5 +1,5 @@
 { stdenv, fetchFromGitHub, pkgconfig, qmake, qttools,
-  deepin-gettext-tools, dtkcore, dtkwidget
+  deepin-gettext-tools, dtkcore, dtkwidget, deepin
 }:
 
 stdenv.mkDerivation rec {
@@ -34,6 +34,8 @@ stdenv.mkDerivation rec {
       -e "s,/usr,$out,"
   '';
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Calendar for Deepin Desktop Environment";
     homepage = https://github.com/linuxdeepin/dde-calendar;
diff --git a/pkgs/desktops/deepin/dde-daemon/default.nix b/pkgs/desktops/deepin/dde-daemon/default.nix
index fe2c5f8f55a1..aedd58263731 100644
--- a/pkgs/desktops/deepin/dde-daemon/default.nix
+++ b/pkgs/desktops/deepin/dde-daemon/default.nix
@@ -2,7 +2,7 @@
   dbus-factory, go-dbus-factory, go-gir-generator, go-lib,
   deepin-gettext-tools, dde-api, alsaLib, glib, gtk3, libinput, libnl,
   librsvg, linux-pam, networkmanager, pulseaudio, xorg, gnome3,
-  python3Packages, hicolor-icon-theme, go }:
+  python3Packages, hicolor-icon-theme, go, deepin }:
 
 buildGoPackage rec {
   name = "${pname}-${version}";
@@ -80,6 +80,8 @@ buildGoPackage rec {
     remove-references-to -t ${go} $out/lib/deepin-daemon/*
   '';
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Daemon for handling Deepin Desktop Environment session settings";
     homepage = https://github.com/linuxdeepin/dde-daemon;
diff --git a/pkgs/desktops/deepin/dde-polkit-agent/default.nix b/pkgs/desktops/deepin/dde-polkit-agent/default.nix
index 71f9e9b0298e..e5d1df6d53b5 100644
--- a/pkgs/desktops/deepin/dde-polkit-agent/default.nix
+++ b/pkgs/desktops/deepin/dde-polkit-agent/default.nix
@@ -1,5 +1,5 @@
 { stdenv, fetchFromGitHub, pkgconfig, qmake, qttools, polkit-qt,
-dtkcore, dtkwidget, dde-qt-dbus-factory }:
+  dtkcore, dtkwidget, dde-qt-dbus-factory, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -36,6 +36,8 @@ stdenv.mkDerivation rec {
       -e "s,/usr/lib/polkit-1-dde/plugins,/run/current-system/sw/lib/polkit-1-dde/plugins,"
   '';
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "PolicyKit agent for Deepin Desktop Environment";
     homepage = https://github.com/linuxdeepin/dde-polkit-agent;
diff --git a/pkgs/desktops/deepin/dde-qt-dbus-factory/default.nix b/pkgs/desktops/deepin/dde-qt-dbus-factory/default.nix
index 007d58b3c304..047c2cc78ccb 100644
--- a/pkgs/desktops/deepin/dde-qt-dbus-factory/default.nix
+++ b/pkgs/desktops/deepin/dde-qt-dbus-factory/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, pkgconfig, qmake, python }:
+{ stdenv, fetchFromGitHub, pkgconfig, qmake, python, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -24,6 +24,8 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Qt DBus interface library for Deepin software";
     homepage = https://github.com/linuxdeepin/dde-qt-dbus-factory;
diff --git a/pkgs/desktops/deepin/dde-session-ui/default.nix b/pkgs/desktops/deepin/dde-session-ui/default.nix
index cab3aff14048..8f0c05e6888f 100644
--- a/pkgs/desktops/deepin/dde-session-ui/default.nix
+++ b/pkgs/desktops/deepin/dde-session-ui/default.nix
@@ -1,7 +1,7 @@
 { stdenv, fetchFromGitHub, pkgconfig, qmake, qtsvg, qttools,
   qtx11extras, xkeyboard_config, xorg, lightdm_qt, gsettings-qt,
   dde-qt-dbus-factory, deepin-gettext-tools, dtkcore, dtkwidget,
-  hicolor-icon-theme }:
+  hicolor-icon-theme, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -50,6 +50,8 @@ stdenv.mkDerivation rec {
     sed -i widgets/*.cpp boxframe/*.cpp -e 's,/usr/share/backgrounds/default_background.jpg,/usr/share/backgrounds/deepin/desktop.jpg,'
   '';
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Deepin desktop-environment - Session UI module";
     homepage = https://github.com/linuxdeepin/dde-session-ui;
diff --git a/pkgs/desktops/deepin/deepin-desktop-base/default.nix b/pkgs/desktops/deepin/deepin-desktop-base/default.nix
index 5b96e335c67e..4c718b76d93f 100644
--- a/pkgs/desktops/deepin/deepin-desktop-base/default.nix
+++ b/pkgs/desktops/deepin/deepin-desktop-base/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, deepin-wallpapers }:
+{ stdenv, fetchFromGitHub, deepin-wallpapers, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -35,6 +35,8 @@ stdenv.mkDerivation rec {
     ln -s ../lib/deepin/desktop-version $out/etc/deepin-version
   '';
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Base assets and definitions for Deepin Desktop Environment";
     homepage = https://github.com/linuxdeepin/deepin-desktop-base;
diff --git a/pkgs/desktops/deepin/deepin-desktop-schemas/default.nix b/pkgs/desktops/deepin/deepin-desktop-schemas/default.nix
index b1a9c52014b8..d871b17aea73 100644
--- a/pkgs/desktops/deepin/deepin-desktop-schemas/default.nix
+++ b/pkgs/desktops/deepin/deepin-desktop-schemas/default.nix
@@ -1,5 +1,6 @@
 { stdenv, fetchFromGitHub, python, deepin-gtk-theme,
-deepin-icon-theme, deepin-sound-theme, deepin-wallpapers, gnome3 }:
+  deepin-icon-theme, deepin-sound-theme, deepin-wallpapers, gnome3,
+  deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -33,6 +34,8 @@ stdenv.mkDerivation rec {
 
   makeFlags = [ "PREFIX=$(out)" ];
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "GSettings deepin desktop-wide schemas";
     homepage = https://github.com/linuxdeepin/deepin-desktop-schemas;
diff --git a/pkgs/desktops/deepin/deepin-gettext-tools/default.nix b/pkgs/desktops/deepin/deepin-gettext-tools/default.nix
index e275429b3951..779fae6a113e 100644
--- a/pkgs/desktops/deepin/deepin-gettext-tools/default.nix
+++ b/pkgs/desktops/deepin/deepin-gettext-tools/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, gettext, python3Packages, perlPackages }:
+{ stdenv, fetchFromGitHub, gettext, python3Packages, perlPackages, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -36,6 +36,8 @@ stdenv.mkDerivation rec {
     wrapProgram $out/bin/deepin-desktop-ts-convert --set PERL5LIB $PERL5LIB
   '';
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Deepin Internationalization utilities";
     homepage = https://github.com/linuxdeepin/deepin-gettext-tools;
diff --git a/pkgs/desktops/deepin/deepin-gtk-theme/default.nix b/pkgs/desktops/deepin/deepin-gtk-theme/default.nix
index c46dea2875ad..d00bf86bc2c2 100644
--- a/pkgs/desktops/deepin/deepin-gtk-theme/default.nix
+++ b/pkgs/desktops/deepin/deepin-gtk-theme/default.nix
@@ -1,7 +1,8 @@
-{ stdenv, fetchFromGitHub, gtk-engine-murrine }:
+{ stdenv, fetchFromGitHub, gtk-engine-murrine, deepin }:
 
 stdenv.mkDerivation rec {
-  name = "deepin-gtk-theme-${version}";
+  name = "${pname}-${version}";
+  pname = "deepin-gtk-theme";
   version = "17.10.9";
 
   src = fetchFromGitHub {
@@ -15,6 +16,8 @@ stdenv.mkDerivation rec {
 
   makeFlags = [ "PREFIX=$(out)" ];
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Deepin GTK Theme";
     homepage = https://github.com/linuxdeepin/deepin-gtk-theme;
diff --git a/pkgs/desktops/deepin/deepin-icon-theme/default.nix b/pkgs/desktops/deepin/deepin-icon-theme/default.nix
index c6d7f3493019..47368ac686ed 100644
--- a/pkgs/desktops/deepin/deepin-icon-theme/default.nix
+++ b/pkgs/desktops/deepin/deepin-icon-theme/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, gtk3, papirus-icon-theme }:
+{ stdenv, fetchFromGitHub, gtk3, papirus-icon-theme, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -24,6 +24,8 @@ stdenv.mkDerivation rec {
     sed -i -e 's|\(-rm -f .*/icon-theme.cache\)|# \1|g' Makefile
   '';
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Icons for the Deepin Desktop Environment";
     homepage = https://github.com/linuxdeepin/deepin-icon-theme;
diff --git a/pkgs/desktops/deepin/deepin-image-viewer/default.nix b/pkgs/desktops/deepin/deepin-image-viewer/default.nix
index 0ba2e306110a..bcbccc4ded56 100644
--- a/pkgs/desktops/deepin/deepin-image-viewer/default.nix
+++ b/pkgs/desktops/deepin/deepin-image-viewer/default.nix
@@ -1,6 +1,6 @@
 { stdenv, fetchFromGitHub, pkgconfig, qmake, qttools, qtsvg,
   qtx11extras, dtkcore, dtkwidget, qt5integration, freeimage, libraw,
-  libexif
+  libexif, deepin
 }:
 
 stdenv.mkDerivation rec {
@@ -41,6 +41,8 @@ stdenv.mkDerivation rec {
       -e "s,/usr,$out,"
   '';
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Image Viewer for Deepin Desktop Environment";
     homepage = https://github.com/linuxdeepin/deepin-image-viewer;
diff --git a/pkgs/desktops/deepin/deepin-menu/default.nix b/pkgs/desktops/deepin/deepin-menu/default.nix
index eeed3579f459..9ac61355c75b 100644
--- a/pkgs/desktops/deepin/deepin-menu/default.nix
+++ b/pkgs/desktops/deepin/deepin-menu/default.nix
@@ -1,5 +1,5 @@
 { stdenv, fetchFromGitHub, pkgconfig, qmake, dtkcore, dtkwidget,
-  qt5integration }:
+  qt5integration, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -30,6 +30,8 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Deepin menu service";
     homepage = https://github.com/linuxdeepin/deepin-menu;
diff --git a/pkgs/desktops/deepin/deepin-metacity/default.nix b/pkgs/desktops/deepin/deepin-metacity/default.nix
index b5eb71108763..78b6303188a2 100644
--- a/pkgs/desktops/deepin/deepin-metacity/default.nix
+++ b/pkgs/desktops/deepin/deepin-metacity/default.nix
@@ -1,6 +1,6 @@
 { stdenv, fetchFromGitHub, pkgconfig, intltool, libtool, gnome3, bamf,
   json-glib, libcanberra-gtk3, libxkbcommon, libstartup_notification,
-  deepin-wallpapers, deepin-desktop-schemas }:
+  deepin-wallpapers, deepin-desktop-schemas, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -52,6 +52,8 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "2D window manager for Deepin";
     homepage = https://github.com/linuxdeepin/deepin-metacity;
diff --git a/pkgs/desktops/deepin/deepin-movie-reborn/default.nix b/pkgs/desktops/deepin/deepin-movie-reborn/default.nix
index 52a51c0db861..a22a261cea24 100644
--- a/pkgs/desktops/deepin/deepin-movie-reborn/default.nix
+++ b/pkgs/desktops/deepin/deepin-movie-reborn/default.nix
@@ -1,6 +1,6 @@
 { stdenv, fetchFromGitHub, cmake, pkgconfig, qttools, qtx11extras,
   dtkcore, dtkwidget, ffmpeg, ffmpegthumbnailer, mpv, pulseaudio,
-  libdvdnav, libdvdread, xorg }:
+  libdvdnav, libdvdread, xorg, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -43,6 +43,8 @@ stdenv.mkDerivation rec {
     sed -i src/libdmr/libdmr.pc.in -e "s,/usr,$out," -e 's,libdir=''${prefix}/,libdir=,'
   '';
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Deepin movie player";
     homepage = https://github.com/linuxdeepin/deepin-movie-reborn;
diff --git a/pkgs/desktops/deepin/deepin-mutter/default.nix b/pkgs/desktops/deepin/deepin-mutter/default.nix
index e397ab53576d..efa36dd66040 100644
--- a/pkgs/desktops/deepin/deepin-mutter/default.nix
+++ b/pkgs/desktops/deepin/deepin-mutter/default.nix
@@ -1,7 +1,6 @@
 { stdenv, fetchFromGitHub, pkgconfig, intltool, libtool, gnome3, xorg,
   libcanberra-gtk3, upower, xkeyboard_config, libxkbcommon,
-  libstartup_notification, libinput, cogl, clutter, systemd
-}:
+  libstartup_notification, libinput, cogl, clutter, systemd, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -51,6 +50,8 @@ stdenv.mkDerivation rec {
     NOCONFIGURE=1 ./autogen.sh
   '';
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Base window manager for deepin, fork of gnome mutter";
     homepage = https://github.com/linuxdeepin/deepin-mutter;
diff --git a/pkgs/desktops/deepin/deepin-shortcut-viewer/default.nix b/pkgs/desktops/deepin/deepin-shortcut-viewer/default.nix
index 1bb112b76f6e..737c99261f9d 100644
--- a/pkgs/desktops/deepin/deepin-shortcut-viewer/default.nix
+++ b/pkgs/desktops/deepin/deepin-shortcut-viewer/default.nix
@@ -1,6 +1,5 @@
 { stdenv, fetchFromGitHub, pkgconfig, qmake, dtkcore, dtkwidget,
-  qt5integration
-}:
+  qt5integration, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -27,6 +26,8 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Pop-up shortcut viewer for Deepin applications";
     homepage = https://github.com/linuxdeepin/deepin-shortcut-viewer;
diff --git a/pkgs/desktops/deepin/deepin-sound-theme/default.nix b/pkgs/desktops/deepin/deepin-sound-theme/default.nix
index f12419a615b3..bb004372497f 100644
--- a/pkgs/desktops/deepin/deepin-sound-theme/default.nix
+++ b/pkgs/desktops/deepin/deepin-sound-theme/default.nix
@@ -1,7 +1,8 @@
-{ stdenv, fetchFromGitHub }:
+{ stdenv, fetchFromGitHub, deepin }:
 
 stdenv.mkDerivation rec {
-  name = "deepin-sound-theme-${version}";
+  name = "${pname}-${version}";
+  pname = "deepin-sound-theme";
   version = "15.10.3";
 
   src = fetchFromGitHub {
@@ -13,6 +14,8 @@ stdenv.mkDerivation rec {
 
   makeFlags = [ "PREFIX=$(out)" ];
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Deepin sound theme";
     homepage = https://github.com/linuxdeepin/deepin-sound-theme;
diff --git a/pkgs/desktops/deepin/deepin-terminal/default.nix b/pkgs/desktops/deepin/deepin-terminal/default.nix
index 26146b8ab477..89e98e78099c 100644
--- a/pkgs/desktops/deepin/deepin-terminal/default.nix
+++ b/pkgs/desktops/deepin/deepin-terminal/default.nix
@@ -1,10 +1,11 @@
 { stdenv, fetchurl, fetchFromGitHub, pkgconfig, gtk3, vala, cmake,
   ninja, vte, libgee, wnck, zssh, gettext, librsvg, libsecret,
-  json-glib, gobjectIntrospection, deepin-menu, deepin-shortcut-viewer
-}:
+  json-glib, gobjectIntrospection, deepin-menu,
+  deepin-shortcut-viewer, deepin }:
 
 stdenv.mkDerivation rec {
-  name = "deepin-terminal-${version}";
+  name = "${pname}-${version}";
+  pname = "deepin-terminal";
   version = "3.0.3";
 
   src = fetchFromGitHub {
@@ -50,6 +51,8 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "The default terminal emulation for Deepin";
     longDescription = ''
diff --git a/pkgs/desktops/deepin/deepin-wallpapers/default.nix b/pkgs/desktops/deepin/deepin-wallpapers/default.nix
index ed2c795fd9cb..8f04bd482184 100644
--- a/pkgs/desktops/deepin/deepin-wallpapers/default.nix
+++ b/pkgs/desktops/deepin/deepin-wallpapers/default.nix
@@ -1,7 +1,8 @@
-{ stdenv, fetchFromGitHub, dde-api }:
+{ stdenv, fetchFromGitHub, dde-api, deepin }:
 
 stdenv.mkDerivation rec {
-  name = "deepin-wallpapers-${version}";
+  name = "${pname}-${version}";
+  pname = "deepin-wallpapers";
   version = "1.7.5";
 
   src = fetchFromGitHub {
@@ -31,6 +32,8 @@ stdenv.mkDerivation rec {
       $out/var/cache/image-blur/$(echo -n $out/share/backgrounds/deepin/desktop.jpg | md5sum | cut -d " " -f 1).jpg
   '';
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Wallpapers for Deepin Desktop Environment";
     homepage = https://github.com/linuxdeepin/deepin-wallpapers;
diff --git a/pkgs/desktops/deepin/deepin-wm/default.nix b/pkgs/desktops/deepin/deepin-wm/default.nix
index f936934dcc0c..66aec528f379 100644
--- a/pkgs/desktops/deepin/deepin-wm/default.nix
+++ b/pkgs/desktops/deepin/deepin-wm/default.nix
@@ -1,7 +1,7 @@
 { stdenv, fetchFromGitHub, pkgconfig, intltool, libtool, vala, gnome3,
   bamf, clutter-gtk, granite, libcanberra-gtk3, libwnck3,
   deepin-mutter, deepin-wallpapers, deepin-desktop-schemas,
-  hicolor-icon-theme }:
+  hicolor-icon-theme, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -48,6 +48,8 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Deepin Window Manager";
     homepage = https://github.com/linuxdeepin/deepin-wm;
diff --git a/pkgs/desktops/deepin/default.nix b/pkgs/desktops/deepin/default.nix
index a6163cd32e20..ca279679e832 100644
--- a/pkgs/desktops/deepin/default.nix
+++ b/pkgs/desktops/deepin/default.nix
@@ -2,6 +2,7 @@
 
 let
   packages = self: with self; {
+    updateScript = callPackage ./update.nix { };
 
     dbus-factory = callPackage ./dbus-factory { };
     dde-api = callPackage ./dde-api { };
diff --git a/pkgs/desktops/deepin/dpa-ext-gnomekeyring/default.nix b/pkgs/desktops/deepin/dpa-ext-gnomekeyring/default.nix
index 4aeba1b4c1bc..c9af2930500d 100644
--- a/pkgs/desktops/deepin/dpa-ext-gnomekeyring/default.nix
+++ b/pkgs/desktops/deepin/dpa-ext-gnomekeyring/default.nix
@@ -1,4 +1,5 @@
-{ stdenv, fetchFromGitHub, pkgconfig, qmake, qttools, gnome3, dde-polkit-agent }:
+{ stdenv, fetchFromGitHub, pkgconfig, qmake, qttools, gnome3,
+  dde-polkit-agent, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -30,6 +31,8 @@ stdenv.mkDerivation rec {
       -e "s,/usr,$out,"
   '';
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "GNOME keyring extension for dde-polkit-agent";
     homepage = https://github.com/linuxdeepin/dpa-ext-gnomekeyring;
diff --git a/pkgs/desktops/deepin/dtkcore/default.nix b/pkgs/desktops/deepin/dtkcore/default.nix
index 3fc9a1b4a03e..bd46896588ee 100644
--- a/pkgs/desktops/deepin/dtkcore/default.nix
+++ b/pkgs/desktops/deepin/dtkcore/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, pkgconfig, qmake, gsettings-qt, pythonPackages }:
+{ stdenv, fetchFromGitHub, pkgconfig, qmake, gsettings-qt, pythonPackages, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -42,6 +42,8 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Deepin tool kit core modules";
     homepage = https://github.com/linuxdeepin/dtkcore;
diff --git a/pkgs/desktops/deepin/dtkwidget/default.nix b/pkgs/desktops/deepin/dtkwidget/default.nix
index 268f9518495e..078905b15ab2 100644
--- a/pkgs/desktops/deepin/dtkwidget/default.nix
+++ b/pkgs/desktops/deepin/dtkwidget/default.nix
@@ -1,7 +1,6 @@
 { stdenv, fetchFromGitHub, pkgconfig, qmake, qttools, qtmultimedia,
   qtsvg, qtx11extras, librsvg, libstartup_notification, gsettings-qt,
-  dde-qt-dbus-factory, dtkcore
-}:
+  dde-qt-dbus-factory, dtkcore, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -41,6 +40,8 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Deepin graphical user interface library";
     homepage = https://github.com/linuxdeepin/dtkwidget;
diff --git a/pkgs/desktops/deepin/dtkwm/default.nix b/pkgs/desktops/deepin/dtkwm/default.nix
index 46ed7bcc3bef..7154ae3da6a9 100644
--- a/pkgs/desktops/deepin/dtkwm/default.nix
+++ b/pkgs/desktops/deepin/dtkwm/default.nix
@@ -1,4 +1,5 @@
-{ stdenv, fetchFromGitHub, pkgconfig, qmake, qtx11extras, dtkcore }:
+{ stdenv, fetchFromGitHub, pkgconfig, qmake, qtx11extras, dtkcore,
+  deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -29,6 +30,8 @@ stdenv.mkDerivation rec {
       LIB_INSTALL_DIR=$out/lib"
   '';
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Deepin graphical user interface library";
     homepage = https://github.com/linuxdeepin/dtkwm;
diff --git a/pkgs/desktops/deepin/go-dbus-factory/default.nix b/pkgs/desktops/deepin/go-dbus-factory/default.nix
index b9b3aa59a0b1..01d504eda896 100644
--- a/pkgs/desktops/deepin/go-dbus-factory/default.nix
+++ b/pkgs/desktops/deepin/go-dbus-factory/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub }:
+{ stdenv, fetchFromGitHub, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -18,6 +18,8 @@ stdenv.mkDerivation rec {
     sed -i -e 's:/share/gocode:/share/go:' Makefile
   '';
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "GoLang DBus factory for the Deepin Desktop Environment";
     homepage = https://github.com/linuxdeepin/go-dbus-factory;
diff --git a/pkgs/desktops/deepin/go-dbus-generator/default.nix b/pkgs/desktops/deepin/go-dbus-generator/default.nix
index fa38e650c3a9..28873d8459ec 100644
--- a/pkgs/desktops/deepin/go-dbus-generator/default.nix
+++ b/pkgs/desktops/deepin/go-dbus-generator/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchFromGitHub, go, go-lib }:
+{ stdenv, fetchFromGitHub, go, go-lib, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -22,6 +22,8 @@ stdenv.mkDerivation rec {
     "GOCACHE=off"
   ];
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Convert dbus interfaces to go-lang or qml wrapper code";
     homepage = https://github.com/linuxdeepin/go-dbus-generator;
diff --git a/pkgs/desktops/deepin/go-gir-generator/default.nix b/pkgs/desktops/deepin/go-gir-generator/default.nix
index d5ec29f1ef8b..96abc9dbf7d2 100644
--- a/pkgs/desktops/deepin/go-gir-generator/default.nix
+++ b/pkgs/desktops/deepin/go-gir-generator/default.nix
@@ -1,4 +1,5 @@
-{ stdenv, fetchFromGitHub, pkgconfig, go, gobjectIntrospection, libgudev }:
+{ stdenv, fetchFromGitHub, pkgconfig, go, gobjectIntrospection,
+  libgudev, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -31,6 +32,8 @@ stdenv.mkDerivation rec {
     "GOCACHE=off"
   ];
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Generate static golang bindings for GObject";
     homepage = https://github.com/linuxdeepin/go-gir-generator;
diff --git a/pkgs/desktops/deepin/go-lib/default.nix b/pkgs/desktops/deepin/go-lib/default.nix
index ff9394425e08..ad4e725f0f59 100644
--- a/pkgs/desktops/deepin/go-lib/default.nix
+++ b/pkgs/desktops/deepin/go-lib/default.nix
@@ -1,6 +1,5 @@
 { stdenv, fetchFromGitHub, glib, xorg, gdk_pixbuf, pulseaudio,
-  mobile-broadband-provider-info
-}:
+  mobile-broadband-provider-info, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -27,6 +26,8 @@ stdenv.mkDerivation rec {
     "GOSITE_DIR=$(out)/share/go"
   ];
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Go bindings for Deepin Desktop Environment development";
     homepage = https://github.com/linuxdeepin/go-lib;
diff --git a/pkgs/desktops/deepin/qt5dxcb-plugin/default.nix b/pkgs/desktops/deepin/qt5dxcb-plugin/default.nix
index 3754de3ea980..dbfe70769762 100644
--- a/pkgs/desktops/deepin/qt5dxcb-plugin/default.nix
+++ b/pkgs/desktops/deepin/qt5dxcb-plugin/default.nix
@@ -1,4 +1,5 @@
-{ stdenv, fetchFromGitHub, pkgconfig, qmake, qtx11extras, libSM, mtdev, cairo }:
+{ stdenv, fetchFromGitHub, pkgconfig, qmake, qtx11extras, libSM,
+  mtdev, cairo, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -30,6 +31,8 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Qt platform theme integration plugin for DDE";
     homepage = https://github.com/linuxdeepin/qt5dxcb-plugin;
diff --git a/pkgs/desktops/deepin/qt5integration/default.nix b/pkgs/desktops/deepin/qt5integration/default.nix
index 28e06bae42d2..7ffdf16cdb33 100644
--- a/pkgs/desktops/deepin/qt5integration/default.nix
+++ b/pkgs/desktops/deepin/qt5integration/default.nix
@@ -1,7 +1,6 @@
-{ stdenv, fetchFromGitHub, pkgconfig, qmake, mtdev, gsettings-qt
-, lxqt, qtx11extras, qtmultimedia, qtsvg, fontconfig, freetype
-, qt5dxcb-plugin, qtstyleplugins, dtkcore, dtkwidget
-}:
+{ stdenv, fetchFromGitHub, pkgconfig, qmake, mtdev, gsettings-qt ,
+  lxqt, qtx11extras, qtmultimedia, qtsvg, fontconfig, freetype ,
+  qt5dxcb-plugin, qtstyleplugins, dtkcore, dtkwidget, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
@@ -42,6 +41,8 @@ stdenv.mkDerivation rec {
 
   enableParallelBuilding = true;
 
+  passthru.updateScript = deepin.updateScript { inherit name; };
+
   meta = with stdenv.lib; {
     description = "Qt platform theme integration plugins for DDE";
     homepage = https://github.com/linuxdeepin/qt5integration;
diff --git a/pkgs/desktops/deepin/update.nix b/pkgs/desktops/deepin/update.nix
new file mode 100644
index 000000000000..761ead015c6b
--- /dev/null
+++ b/pkgs/desktops/deepin/update.nix
@@ -0,0 +1,37 @@
+{ lib, writeScript, coreutils, curl, gnugrep, gnused, jq, common-updater-scripts, nix }:
+{ name, ignored-versions ? "^2014\\.|^v[0-9]+" }:
+
+let
+  nameAndVersion = builtins.parseDrvName name;
+  packageVersion = nameAndVersion.version;
+  packageName = nameAndVersion.name;
+  attrPath = "deepin.${packageName}";
+in
+
+writeScript "update-${packageName}" ''
+  set -o errexit
+  set -x
+
+  # search for the latest version of the package on github
+  PATH=${lib.makeBinPath [ common-updater-scripts coreutils curl gnugrep gnused jq ]}
+  tags=$(curl -s https://api.github.com/repos/linuxdeepin/${packageName}/tags)
+  tags=$(echo "$tags" | jq -r '.[] | .name')
+  echo "# ${name}" >> git-commits.txt
+  echo "#   available tags:" >> git-commits.txt
+  echo "$tags" | ${gnused}/bin/sed -e 's/^/#      /' >> git-commits.txt
+  if [ -n "${ignored-versions}" ]; then
+    tags=$(echo "$tags" | grep -vE "${ignored-versions}")
+  fi
+  latest_tag=$(echo "$tags" | sort --version-sort | tail -1)
+
+  # generate commands to commit the changes
+  if [ "${packageVersion}" != "$latest_tag" ]; then
+    pfile=$(EDITOR=echo ${nix}/bin/nix edit -f. ${attrPath})
+    echo "   git add $pfile " >> git-commits.txt
+    echo "   git commit -m \"${attrPath}: ${packageVersion} -> $latest_tag\"" >> git-commits.txt
+  fi
+
+  # update the nix expression
+  update-source-version "${attrPath}" "$latest_tag"
+  echo "" >> git-commits.txt
+''

From f0bec94452cc4b571c186877d59433030a240abd Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 30 Oct 2018 21:16:19 -0300
Subject: [PATCH 0927/1129] deepin.dde-api: 3.1.30 -> 3.5.0

---
 pkgs/desktops/deepin/dde-api/default.nix | 27 ++++++-----
 pkgs/desktops/deepin/dde-api/deps.nix    | 59 +++++++-----------------
 2 files changed, 31 insertions(+), 55 deletions(-)

diff --git a/pkgs/desktops/deepin/dde-api/default.nix b/pkgs/desktops/deepin/dde-api/default.nix
index 9e25d0314401..c1321acb853e 100644
--- a/pkgs/desktops/deepin/dde-api/default.nix
+++ b/pkgs/desktops/deepin/dde-api/default.nix
@@ -1,12 +1,12 @@
-{ stdenv, buildGoPackage, fetchFromGitHub, pkgconfig ,
-  go-gir-generator, glib, gtk3, poppler, librsvg, pulseaudio, alsaLib,
-  libcanberra, gnome3, deepin-gettext-tools, go, deepin
-}:
+{ stdenv, buildGoPackage, fetchFromGitHub, pkgconfig,
+  deepin-gettext-tools, go-dbus-factory, go-gir-generator, go-lib,
+  alsaLib, glib, gtk3, libcanberra, libgudev, librsvg, poppler,
+  pulseaudio, go, deepin }:
 
 buildGoPackage rec {
   name = "${pname}-${version}";
   pname = "dde-api";
-  version = "3.1.30";
+  version = "3.5.0";
 
   goPackagePath = "pkg.deepin.io/dde/api";
 
@@ -14,29 +14,32 @@ buildGoPackage rec {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "0piw6ka2xcbd5vi7m33d1afdjbb7nycxvmai530ka6r2xjabrkir";
+    sha256 = "1g3s0i5wa6qyv00yksz4r4cy2vhiknq8v0yx7aribvwm3gxf7jw3";
   };
 
   goDeps = ./deps.nix;
 
   nativeBuildInputs = [
     pkgconfig
-    go-gir-generator
     deepin-gettext-tools
+    go-dbus-factory
+    go-gir-generator
+    go-lib
   ];
 
   buildInputs = [
+    alsaLib
     glib
     gtk3
-    poppler
-    librsvg
-    pulseaudio
-    alsaLib
     libcanberra
-    gnome3.libgudev
+    libgudev
+    librsvg
+    poppler
+    pulseaudio
   ];
 
   postPatch = ''
+    patchShebangs .
     sed -i -e "s|/var|$bin/var|" Makefile
   '';
 
diff --git a/pkgs/desktops/deepin/dde-api/deps.nix b/pkgs/desktops/deepin/dde-api/deps.nix
index 9df368325e3c..bd7a13043da2 100644
--- a/pkgs/desktops/deepin/dde-api/deps.nix
+++ b/pkgs/desktops/deepin/dde-api/deps.nix
@@ -32,35 +32,26 @@
     fetch = {
       type = "git";
       url = "https://github.com/disintegration/imaging";
-      rev = "32df9565b4e0c1460f1915d53f6ff198d9a41af2";
-      sha256 = "1nkmaav375fv4610g8i9bam33pv4aa4fy2n4nypprhc7vq0svwkm";
+      rev = "9458da53d1e65e098d48467a4317c403327e4424";
+      sha256 = "1b0ma9if8s892qfx5b1vjinxn00ah9vsyxijs8knkilrhf5vqcx4";
     };
   }
   {
-    goPackagePath = "github.com/kr/pretty";
+    goPackagePath = "github.com/fogleman/gg";
     fetch = {
       type = "git";
-      url = "https://github.com/kr/pretty";
-      rev = "73f6ac0b30a98e433b289500d779f50c1a6f0712";
-      sha256 = "18m4pwg2abd0j9cn5v3k2ksk9ig4vlwxmlw9rrglanziv9l967qp";
+      url = "https://github.com/fogleman/gg";
+      rev = "0e0ff3ade7039063fe954cc1b45fad6cd4ac80db";
+      sha256 = "06gvsngfwizdxin90nldix5503fqgnwqmqvxzrz0xg5hfazwfra5";
     };
   }
   {
-    goPackagePath = "github.com/kr/text";
+    goPackagePath = "github.com/golang/freetype";
     fetch = {
       type = "git";
-      url = "https://github.com/kr/text";
-      rev = "e2ffdb16a802fe2bb95e2e35ff34f0e53aeef34f";
-      sha256 = "1gm5bsl01apvc84bw06hasawyqm4q84vx1pm32wr9jnd7a8vjgj1";
-    };
-  }
-  {
-    goPackagePath = "github.com/linuxdeepin/go-dbus-factory";
-    fetch = {
-      type = "git";
-      url = "https://github.com/linuxdeepin/go-dbus-factory";
-      rev = "2a30fc6fb47b70b8879855df8e29c8f581c419aa";
-      sha256 = "0b0j47n3bb5fd04p01jla6k9vz2ck8l8512ga0xsn78177yb2z0w";
+      url = "https://github.com/golang/freetype";
+      rev = "e2365dfdc4a05e4b8299a783240d4a7d5a65d4e4";
+      sha256 = "194w3djc6fv1rgcjqds085b9fq074panc5vw582bcb8dbfzsrqxc";
     };
   }
   {
@@ -68,8 +59,8 @@
     fetch = {
       type = "git";
       url = "https://github.com/linuxdeepin/go-x11-client";
-      rev = "8f12fd35ff10b391f0321aa41b94db6acd951ea3";
-      sha256 = "1axxzzhbiwvi76d19bix3zm5wv3qmlq0wgji9mwjbmkb4bvp0v3d";
+      rev = "03541136501cab4910ad8852fe749ef8e18907ca";
+      sha256 = "1iiw8qclpklim81hz1sdjp2ajw0ljvjz19n9jly86nbw6m8x4gkp";
     };
   }
   {
@@ -86,8 +77,8 @@
     fetch = {
       type = "git";
       url = "https://go.googlesource.com/image";
-      rev = "991ec62608f3c0da01d400756917825d1e2fd528";
-      sha256 = "0jipi9czjczi6hlqb5kchgml8r6h6qyb4gqrb0nnb63m25510019";
+      rev = "69cc3646b96e61de0b417f4815b86c36e65783ee";
+      sha256 = "0nkywb3r0qvwkmykpswnf0svxi463ycn293y5jjididzxv9qxdp9";
     };
   }
   {
@@ -95,8 +86,8 @@
     fetch = {
       type = "git";
       url = "https://go.googlesource.com/net";
-      rev = "146acd28ed5894421fb5aac80ca93bc1b1f46f87";
-      sha256 = "0d177474z85nvxz8ch6y9wjqz288844wwx8q9za3x2njnk4jbgxj";
+      rev = "c44066c5c816ec500d459a2a324a753f78531ae0";
+      sha256 = "0mgww74bl15d0jvsh4f3qr1ckjzb8icb8hn0mgs5ppa0b2fgpc4f";
     };
   }
   {
@@ -108,22 +99,4 @@
       sha256 = "0mndnv3hdngr3bxp7yxfd47cas4prv98sqw534mx7vp38gd88n5r";
     };
   }
-  {
-    goPackagePath = "gopkg.in/check.v1";
-    fetch = {
-      type = "git";
-      url = "https://gopkg.in/check.v1";
-      rev = "788fd78401277ebd861206a03c884797c6ec5541";
-      sha256 = "0v3bim0j375z81zrpr5qv42knqs0y2qv2vkjiqi5axvb78slki1a";
-    };
-  }
-  {
-    goPackagePath = "pkg.deepin.io/lib";
-    fetch = {
-      type = "git";
-      url = "https://github.com/linuxdeepin/go-lib.git";
-      rev = "f09dcc32fc5a36b53ff7760e5a06e7f8f97b81f9";
-      sha256 = "1z4iw7h6lknm9jrna2c73icg1a1mxvzrqdhgjvaiww89mql1jzb4";
-    };
-  }
 ]

From 8a3527d6779c1cbb07f8c8ebc9e0e2215c5261c6 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 30 Oct 2018 21:16:19 -0300
Subject: [PATCH 0928/1129] deepin.dde-daemon: 3.2.24.7 -> 3.6.0

---
 pkgs/desktops/deepin/dde-daemon/default.nix |  4 ++--
 pkgs/desktops/deepin/dde-daemon/deps.nix    | 25 ++++++++++++++-------
 2 files changed, 19 insertions(+), 10 deletions(-)

diff --git a/pkgs/desktops/deepin/dde-daemon/default.nix b/pkgs/desktops/deepin/dde-daemon/default.nix
index aedd58263731..3678694be9ee 100644
--- a/pkgs/desktops/deepin/dde-daemon/default.nix
+++ b/pkgs/desktops/deepin/dde-daemon/default.nix
@@ -7,7 +7,7 @@
 buildGoPackage rec {
   name = "${pname}-${version}";
   pname = "dde-daemon";
-  version = "3.2.24.7";
+  version = "3.6.0";
 
   goPackagePath = "pkg.deepin.io/dde/daemon";
 
@@ -15,7 +15,7 @@ buildGoPackage rec {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "17dvhqrw0dqy3d0wd9ailb18y2rg7575g3ffy0d5rg9m3y65y1y6";
+    sha256 = "0gn2zp34wg79lvzdfla6yb4gs3f9ll83kj765zvig1wpx51nq1aj";
   };
 
   patches = [
diff --git a/pkgs/desktops/deepin/dde-daemon/deps.nix b/pkgs/desktops/deepin/dde-daemon/deps.nix
index 5ffecc28882d..3d241baa3260 100644
--- a/pkgs/desktops/deepin/dde-daemon/deps.nix
+++ b/pkgs/desktops/deepin/dde-daemon/deps.nix
@@ -41,8 +41,8 @@
     fetch = {
       type = "git";
       url = "https://github.com/linuxdeepin/go-x11-client";
-      rev = "8f12fd35ff10b391f0321aa41b94db6acd951ea3";
-      sha256 = "1axxzzhbiwvi76d19bix3zm5wv3qmlq0wgji9mwjbmkb4bvp0v3d";
+      rev = "03541136501cab4910ad8852fe749ef8e18907ca";
+      sha256 = "1iiw8qclpklim81hz1sdjp2ajw0ljvjz19n9jly86nbw6m8x4gkp";
     };
   }
   {
@@ -68,8 +68,8 @@
     fetch = {
       type = "git";
       url = "https://go.googlesource.com/image";
-      rev = "991ec62608f3c0da01d400756917825d1e2fd528";
-      sha256 = "0jipi9czjczi6hlqb5kchgml8r6h6qyb4gqrb0nnb63m25510019";
+      rev = "69cc3646b96e61de0b417f4815b86c36e65783ee";
+      sha256 = "0nkywb3r0qvwkmykpswnf0svxi463ycn293y5jjididzxv9qxdp9";
     };
   }
   {
@@ -77,8 +77,8 @@
     fetch = {
       type = "git";
       url = "https://go.googlesource.com/net";
-      rev = "04a2e542c03f1d053ab3e4d6e5abcd4b66e2be8e";
-      sha256 = "040i9f6ymj4z25957h20id9kfmlrcp35y4sfd99hngw9li50ihql";
+      rev = "c44066c5c816ec500d459a2a324a753f78531ae0";
+      sha256 = "0mgww74bl15d0jvsh4f3qr1ckjzb8icb8hn0mgs5ppa0b2fgpc4f";
     };
   }
   {
@@ -86,8 +86,8 @@
     fetch = {
       type = "git";
       url = "https://go.googlesource.com/text";
-      rev = "4d1c5fb19474adfe9562c9847ba425e7da817e81";
-      sha256 = "1y4rf9cmjyf8r56khr1sz0chbq1v0ynaj63i2z1mq6k6h6ww45da";
+      rev = "6f44c5a2ea40ee3593d98cdcc905cc1fdaa660e2";
+      sha256 = "00mwzxly5isgf0glz7k3k2dkyqkjfc4z55qxajx4lgcp3h8xn9xj";
     };
   }
   {
@@ -99,4 +99,13 @@
       sha256 = "0mndnv3hdngr3bxp7yxfd47cas4prv98sqw534mx7vp38gd88n5r";
     };
   }
+  {
+    goPackagePath = "pkg.deepin.io/lib";
+    fetch = {
+      type = "git";
+      url = "https://github.com/linuxdeepin/go-lib.git";
+      rev = "b199d0dc96e979398ea3985334ccf9c20236d1a7";
+      sha256 = "0g84v1adnnyqc1mv45n3wlvnivkm1fi8ywszzgwx8irl3iddfvxv";
+    };
+  }
 ]

From 12b399005c4e9b84d385c5ad52ae40aaa795281d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 30 Oct 2018 21:16:19 -0300
Subject: [PATCH 0929/1129] deepin.dde-qt-dbus-factory: 1.0.4 -> 1.0.5

---
 pkgs/desktops/deepin/dde-qt-dbus-factory/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/deepin/dde-qt-dbus-factory/default.nix b/pkgs/desktops/deepin/dde-qt-dbus-factory/default.nix
index 047c2cc78ccb..f28d8f77b3c3 100644
--- a/pkgs/desktops/deepin/dde-qt-dbus-factory/default.nix
+++ b/pkgs/desktops/deepin/dde-qt-dbus-factory/default.nix
@@ -3,13 +3,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "dde-qt-dbus-factory";
-  version = "1.0.4";
+  version = "1.0.5";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "0j0f57byzlz2ixgj6qr1pda83bpwn2q8kxv4i2jv99n6g0qw4nmw";
+    sha256 = "0cz55hsbhy1ab1mndv0sp6xnqrhz2y66w7pcxy8v9k87ii32czf8";
   };
 
   nativeBuildInputs = [

From 8a75f168de454e75270f4832564e2551d5dc3a54 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 30 Oct 2018 21:16:19 -0300
Subject: [PATCH 0930/1129] deepin.dde-session-ui: 4.5.1.10 -> 4.6.1

---
 pkgs/desktops/deepin/dde-session-ui/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/desktops/deepin/dde-session-ui/default.nix b/pkgs/desktops/deepin/dde-session-ui/default.nix
index 8f0c05e6888f..303c4db57dd1 100644
--- a/pkgs/desktops/deepin/dde-session-ui/default.nix
+++ b/pkgs/desktops/deepin/dde-session-ui/default.nix
@@ -6,13 +6,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "dde-session-ui";
-  version = "4.5.1.10";
+  version = "4.6.1";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "0cr3g9jbgpp8k41i86lr4pg88gn690nzili7ah745vf1kdwvi1w0";
+    sha256 = "190dgrwr5ji2bjndg2bmggpyccdz6pa3acx86yqmxfmirx669w92";
   };
 
   nativeBuildInputs = [
@@ -45,7 +45,7 @@ stdenv.mkDerivation rec {
     find -type f -exec sed -i -e "s,Exec=/usr,Exec=$out," {} +
     find -type f -exec sed -i -e "s,/usr/share/dde-session-ui,$out/share/dde-session-ui," {} +
     sed -i global_util/xkbparser.h -e "s,/usr/share/X11/xkb/rules/base.xml,${xkeyboard_config}/share/X11/xkb/rules/base.xml,"
-    sed -i lightdm-deepin-greeter/Scripts/lightdm-deepin-greeter -e "s,/usr/bin/lightdm-deepin-greeter,$out/bin/lightdm-deepin-greeter,"
+    sed -i lightdm-deepin-greeter/scripts/lightdm-deepin-greeter -e "s,/usr/bin/lightdm-deepin-greeter,$out/bin/lightdm-deepin-greeter,"
     # fix default background url
     sed -i widgets/*.cpp boxframe/*.cpp -e 's,/usr/share/backgrounds/default_background.jpg,/usr/share/backgrounds/deepin/desktop.jpg,'
   '';

From a506b596681073769dae03b3f85597b53db23eb0 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 30 Oct 2018 21:16:20 -0300
Subject: [PATCH 0931/1129] deepin.deepin-desktop-base: 2018.7.23 -> 2018.10.29

---
 pkgs/desktops/deepin/deepin-desktop-base/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/deepin/deepin-desktop-base/default.nix b/pkgs/desktops/deepin/deepin-desktop-base/default.nix
index 4c718b76d93f..80a368c5be99 100644
--- a/pkgs/desktops/deepin/deepin-desktop-base/default.nix
+++ b/pkgs/desktops/deepin/deepin-desktop-base/default.nix
@@ -3,13 +3,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "deepin-desktop-base";
-  version = "2018.7.23";
+  version = "2018.10.29";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "1n1bjkvhgq138jcg3zkwg55r41056x91mh191mirlpvpic574ydc";
+    sha256 = "0l2zb7rpag2q36lqsgvirhjgmj7w243nsi1rywkypf2xm7g2v235";
   };
 
   buildInputs = [ deepin-wallpapers ];

From 92613a44b792092663e15826d30375afde0c559b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 30 Oct 2018 21:16:20 -0300
Subject: [PATCH 0932/1129] deepin.deepin-desktop-schemas: 3.2.18.7 -> 3.4.0

---
 pkgs/desktops/deepin/deepin-desktop-schemas/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/deepin/deepin-desktop-schemas/default.nix b/pkgs/desktops/deepin/deepin-desktop-schemas/default.nix
index d871b17aea73..d2b70ec4a896 100644
--- a/pkgs/desktops/deepin/deepin-desktop-schemas/default.nix
+++ b/pkgs/desktops/deepin/deepin-desktop-schemas/default.nix
@@ -5,13 +5,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "deepin-desktop-schemas";
-  version = "3.2.18.7";
+  version = "3.4.0";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "1siv28wbfjydr3s9k9i5b9fin39yr8ys90f3wi7b8rfm3cr5yy6j";
+    sha256 = "10x0rh9z925yzyp8h0vgmg4313smvran06lvr12c3931qkmkzwgq";
   };
 
   nativeBuildInputs = [

From 99b557e57472ac01052175590c7c765a070b0599 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 06:28:09 -0800
Subject: [PATCH 0933/1129] flacon: 4.1.0 -> 5.0.0 (#50114)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/flacon/versions
---
 pkgs/applications/audio/flacon/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/audio/flacon/default.nix b/pkgs/applications/audio/flacon/default.nix
index 8f3facec09b1..cec20743abdd 100644
--- a/pkgs/applications/audio/flacon/default.nix
+++ b/pkgs/applications/audio/flacon/default.nix
@@ -5,13 +5,13 @@
 
 stdenv.mkDerivation rec {
   name = "flacon-${version}";
-  version = "4.1.0";
+  version = "5.0.0";
 
   src = fetchFromGitHub {
     owner = "flacon";
     repo = "flacon";
     rev = "v${version}";
-    sha256 = "1sw2v2w3s79lbzhkf96m8lwvag824am7rwfzzsi8bz6sa6krmj0m";
+    sha256 = "0pglqm2z7mp5igqmfnmvrgjhfbfrj8q5jvd0a0g2dzv3rqwfw4vc";
   };
 
   nativeBuildInputs = [ cmake pkgconfig makeWrapper ];

From 2fd0c31673f5d24fce5ab4f54ebe515aa4893eed Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 06:32:06 -0800
Subject: [PATCH 0934/1129] calc: 2.12.6.8 -> 2.12.7.1 (#50173)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/calc/versions
---
 pkgs/applications/science/math/calc/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/science/math/calc/default.nix b/pkgs/applications/science/math/calc/default.nix
index ff6b2d0ad2d1..efa2b55499ab 100644
--- a/pkgs/applications/science/math/calc/default.nix
+++ b/pkgs/applications/science/math/calc/default.nix
@@ -3,14 +3,14 @@
 
 stdenv.mkDerivation rec {
   name = "calc-${version}";
-  version = "2.12.6.8";
+  version = "2.12.7.1";
 
   src = fetchurl {
     urls = [
       "https://github.com/lcn2/calc/releases/download/${version}/${name}.tar.bz2"
       "http://www.isthe.com/chongo/src/calc/${name}.tar.bz2"
     ];
-    sha256 = "144am0pra3hh7635fmi7kqynba8z246dx1dzclm9qx965p3xb4hb";
+    sha256 = "0k58vv8m26kq74b8p784d749mzir0pi6g48hch1f6680d3fwa7gb";
   };
 
   patchPhase = ''

From 5d53675c2fa583c23bc955d0bf6c25bcc47af78f Mon Sep 17 00:00:00 2001
From: Melkor333 <sam@yosemitesam.ch>
Date: Fri, 12 Oct 2018 14:18:44 +0200
Subject: [PATCH 0935/1129] wpgtk: init at 5.7.4

---
 maintainers/maintainer-list.nix  |  5 ++++
 pkgs/tools/X11/wpgtk/default.nix | 49 ++++++++++++++++++++++++++++++++
 pkgs/top-level/all-packages.nix  |  2 ++
 3 files changed, 56 insertions(+)
 create mode 100644 pkgs/tools/X11/wpgtk/default.nix

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index c73cda5ea1cf..9736c66b9e93 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -2686,6 +2686,11 @@
     github = "melsigl";
     name = "Melanie B. Sigl";
   };
+  melkor333 = {
+    email = "samuel@ton-kunst.ch";
+    github = "melkor333";
+    name = "Samuel Ruprecht";
+  };
   metabar = {
     email = "softs@metabarcoding.org";
     name = "Celine Mercier";
diff --git a/pkgs/tools/X11/wpgtk/default.nix b/pkgs/tools/X11/wpgtk/default.nix
new file mode 100644
index 000000000000..b6ba431da9d6
--- /dev/null
+++ b/pkgs/tools/X11/wpgtk/default.nix
@@ -0,0 +1,49 @@
+{ stdenv, python36Packages, fetchFromGitHub, pywal, feh, libxslt, imagemagick,
+  gobjectIntrospection, gtk3, wrapGAppsHook, gnome3 }:
+
+python36Packages.buildPythonApplication rec {
+  pname = "wpgtk";
+  version = "5.7.4";
+
+  src = fetchFromGitHub {
+    owner = "deviantfero";
+    repo = "wpgtk";
+    rev = "${version}";
+    sha256 = "0c0kmc18lbr7nk3hh44hai9z06lfsgwxnjdv02hpjwrxg40zh726";
+  };
+
+  pythonPath = [
+    python36Packages.pygobject3
+    python36Packages.pillow
+    pywal
+    imagemagick
+  ];
+
+  buildInputs = [
+    wrapGAppsHook
+    gtk3
+    gobjectIntrospection
+    gnome3.adwaita-icon-theme
+    libxslt
+  ];
+
+  # The $HOME variable must be set to build the package. A "permission denied" error will occur otherwise
+  preBuild = ''
+      export HOME=$(pwd)
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Template based wallpaper/colorscheme generator and manager";
+    longDescription = ''
+     In short, wpgtk is a colorscheme/wallpaper manager with a template system attached which lets you create templates from any textfile and will replace keywords on it on the fly, allowing for great styling and theming possibilities.
+
+     wpgtk uses pywal as its colorscheme generator, but builds upon it with a UI and other features, such as the abilty to mix and edit the colorschemes generated and save them with their respective wallpapers, having light and dark themes, hackable and fast GTK+ theme made specifically for wpgtk and custom keywords and values to replace in templates.
+
+     INFO: To work properly, this tool needs "programs.dconf.enable = true" on nixos or dconf installed. A reboot may be required after installing dconf.
+     '';
+    homepage = https://github.com/deviantfero/wpgtk;
+    license = licenses.gpl2;
+    platforms = platforms.linux;
+    maintainers = [ maintainers.melkor333 ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 5c7e3fae7c52..d81aece4a55a 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -6252,6 +6252,8 @@ with pkgs;
 
   wolf-shaper = callPackage ../applications/audio/wolf-shaper { };
 
+  wpgtk = callPackage ../tools/X11/wpgtk { };
+
   wring = nodePackages.wring;
 
   wrk = callPackage ../tools/networking/wrk { };

From c47f99e4d87d4eb8317296f5405030cb0c874092 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 30 Oct 2018 21:16:20 -0300
Subject: [PATCH 0936/1129] deepin.deepin-image-viewer: 1.2.23 -> 1.3.1

- Update to version 1.3.1

- Currently does not build on aarch64-linux. It seems that in the libpng
package (which is bundled with freeimage) neon is not available on the
platform, but is detected as being available.
---
 pkgs/desktops/deepin/deepin-image-viewer/default.nix | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/deepin/deepin-image-viewer/default.nix b/pkgs/desktops/deepin/deepin-image-viewer/default.nix
index bcbccc4ded56..0b08f7cd39a0 100644
--- a/pkgs/desktops/deepin/deepin-image-viewer/default.nix
+++ b/pkgs/desktops/deepin/deepin-image-viewer/default.nix
@@ -6,13 +6,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "deepin-image-viewer";
-  version = "1.2.23";
+  version = "1.3.1";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "1n1b3j65in6v7q5bxgkiam8qy56kjn9prld3sjrbc2mqzff8sm3q";
+    sha256 = "0dxdvm6hzj6izfxka35za8y7vacd06nksfgzx6xsv7ywzagri4k5";
   };
 
   nativeBuildInputs = [
@@ -48,6 +48,7 @@ stdenv.mkDerivation rec {
     homepage = https://github.com/linuxdeepin/deepin-image-viewer;
     license = licenses.gpl3Plus;
     platforms = platforms.linux;
+    badPlatforms = [ "aarch64-linux" ]; # See https://github.com/NixOS/nixpkgs/pull/46463#issuecomment-420274189
     maintainers = with maintainers; [ romildo ];
   };
 }

From 1f9bd3c9650adf73f78a00e8218f89f1867ad5c9 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 30 Oct 2018 21:16:20 -0300
Subject: [PATCH 0937/1129] deepin.deepin-movie-reborn: 3.2.10 -> 3.2.14

---
 pkgs/desktops/deepin/deepin-movie-reborn/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/deepin/deepin-movie-reborn/default.nix b/pkgs/desktops/deepin/deepin-movie-reborn/default.nix
index a22a261cea24..3d195f8f1c0c 100644
--- a/pkgs/desktops/deepin/deepin-movie-reborn/default.nix
+++ b/pkgs/desktops/deepin/deepin-movie-reborn/default.nix
@@ -5,13 +5,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "deepin-movie-reborn";
-  version = "3.2.10";
+  version = "3.2.14";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "0lqmbvl9yyxgkiipd9r8mgmxl2sm34l3gr3hkwlc7r2l6kc32933";
+    sha256 = "1i9sdg2p6qp57rqzrnjbxnqj3mg1qggzyq3yykw271vs8h85a707";
   };
 
   nativeBuildInputs = [

From 1a8d6646d59aac9a09c832a37ee46cfe8b79c4b3 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 30 Oct 2018 21:16:20 -0300
Subject: [PATCH 0938/1129] deepin.deepin-terminal: 3.0.3 -> 3.0.10

- Update to version 3.0.10
- Add some missing dependencies
- Remove patch 'remove-vendor.patch' that went upstream
- zssh binary path is not hardcoded anymore
---
 .../deepin/deepin-terminal/default.nix        | 57 ++++++++++---------
 1 file changed, 30 insertions(+), 27 deletions(-)

diff --git a/pkgs/desktops/deepin/deepin-terminal/default.nix b/pkgs/desktops/deepin/deepin-terminal/default.nix
index 89e98e78099c..de5ac800747a 100644
--- a/pkgs/desktops/deepin/deepin-terminal/default.nix
+++ b/pkgs/desktops/deepin/deepin-terminal/default.nix
@@ -1,54 +1,57 @@
-{ stdenv, fetchurl, fetchFromGitHub, pkgconfig, gtk3, vala, cmake,
-  ninja, vte, libgee, wnck, zssh, gettext, librsvg, libsecret,
-  json-glib, gobjectIntrospection, deepin-menu,
-  deepin-shortcut-viewer, deepin }:
+{ stdenv, fetchurl, fetchFromGitHub, pkgconfig, cmake, ninja, vala,
+  gettext, gobjectIntrospection, at-spi2-core, dbus, epoxy, expect,
+  gtk3, json-glib, libXdmcp, libgee, libpthreadstubs, librsvg,
+  libsecret, libtasn1, libxcb, libxkbcommon, p11-kit, pcre, vte, wnck,
+  deepin-menu, deepin-shortcut-viewer, deepin }:
 
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "deepin-terminal";
-  version = "3.0.3";
+  version = "3.0.10";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = "deepin-terminal";
     rev = version;
-    sha256 = "04yvim97a4j8fq5lq2g6svs8qs79np9m4nl6x83iv02wkb9b7gqa";
+    sha256 = "1jrzx0igq2csb25k4ak5hj81gpvb7zwbg4i64p4mln4vl7x27i5q";
   };
 
-  patches = [
-    # Do not build vendored zssh and vte
-    (fetchurl {
-      name = "remove-vendor.patch";
-      url = https://git.archlinux.org/svntogit/community.git/plain/trunk/remove-vendor.patch?h=packages/deepin-terminal&id=de701614c19c273b98b60fd6790795ff7d8a157e;
-      sha256 = "0g7hhvr7ay9g0cgc6qqvzhbcwvbzvrrilbn8w46ypfzj7w5hlkqv";
-    })
-  ];
-
-  postPatch = ''
-    substituteInPlace ssh_login.sh --replace /usr/lib/deepin-terminal/zssh "${zssh}/bin/zssh"
-  '';
-
   nativeBuildInputs = [
     pkgconfig
-    vala
     cmake
     ninja
+    vala
     gettext
     gobjectIntrospection # For setup hook
   ];
 
   buildInputs = [
-    gtk3
-    vte
-    libgee
-    wnck
-    librsvg
-    libsecret
-    json-glib
+    at-spi2-core
+    dbus
     deepin-menu
     deepin-shortcut-viewer
+    epoxy
+    expect
+    gtk3
+    json-glib
+    libXdmcp
+    libgee
+    libpthreadstubs
+    librsvg
+    libsecret
+    libtasn1
+    libxcb
+    libxkbcommon
+    p11-kit
+    pcre
+    vte
+    wnck
   ];
 
+  postPatch = ''
+    patchShebangs .
+  '';
+
   enableParallelBuilding = true;
 
   passthru.updateScript = deepin.updateScript { inherit name; };

From 5ef22d4b1ef9291bd8d6c76e3174ca5c01e44e0a Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 30 Oct 2018 21:16:20 -0300
Subject: [PATCH 0939/1129] deepin.dtkcore: 2.0.9.4 -> 2.0.9.8

---
 pkgs/desktops/deepin/dtkcore/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/deepin/dtkcore/default.nix b/pkgs/desktops/deepin/dtkcore/default.nix
index bd46896588ee..9904c58128f5 100644
--- a/pkgs/desktops/deepin/dtkcore/default.nix
+++ b/pkgs/desktops/deepin/dtkcore/default.nix
@@ -3,13 +3,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "dtkcore";
-  version = "2.0.9.4";
+  version = "2.0.9.8";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "184yg1501hvv7n1c7r0fl2y4d4nhif368rrbrd1phwzfvh6x1ji4";
+    sha256 = "06jj5gpy2qbmc21nf0fnbvgw7nbjjgvzx7m2vg9byw5il8l4g22h";
   };
 
   nativeBuildInputs = [

From 40ba37bfd9215b5d0a138998c8e9e24baaa0341b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 30 Oct 2018 21:16:20 -0300
Subject: [PATCH 0940/1129] deepin.dtkwidget: 2.0.9.4 -> 2.0.9.9

---
 pkgs/desktops/deepin/dtkwidget/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/deepin/dtkwidget/default.nix b/pkgs/desktops/deepin/dtkwidget/default.nix
index 078905b15ab2..16125efff8e2 100644
--- a/pkgs/desktops/deepin/dtkwidget/default.nix
+++ b/pkgs/desktops/deepin/dtkwidget/default.nix
@@ -5,13 +5,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "dtkwidget";
-  version = "2.0.9.4";
+  version = "2.0.9.9";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "06iyb3ryxrqkwxdazpv8cgabqa4djldgm3q5icsa2grqrgy8vw5m";
+    sha256 = "1h4vm6a4lb6w6nkx2ns7a526mqyi9hqi7j5lqafd7ycwxlrc64nb";
   };
 
   nativeBuildInputs = [

From 1ad9e7a355a65bb39ff37671e7f6d6b6feda946f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 30 Oct 2018 21:16:21 -0300
Subject: [PATCH 0941/1129] deepin.go-gir-generator: 1.0.4 -> 1.1.0

---
 pkgs/desktops/deepin/go-gir-generator/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/deepin/go-gir-generator/default.nix b/pkgs/desktops/deepin/go-gir-generator/default.nix
index 96abc9dbf7d2..183ae58fecd0 100644
--- a/pkgs/desktops/deepin/go-gir-generator/default.nix
+++ b/pkgs/desktops/deepin/go-gir-generator/default.nix
@@ -4,13 +4,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "go-gir-generator";
-  version = "1.0.4";
+  version = "1.1.0";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "0yi3lsgkxi8ghz2c7msf2df20jxkvzj8s47slvpzz4m57i82vgzl";
+    sha256 = "0grp4ffy3vmlknzmymnxq1spwshff2ylqsw82pj4y2v2fcvnqfvb";
   };
 
   nativeBuildInputs = [

From b8587dca810a5f42cde89238a6d06d7c7fa995a3 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 30 Oct 2018 21:16:21 -0300
Subject: [PATCH 0942/1129] deepin.go-lib: 1.2.16.3 -> 1.3.0

---
 pkgs/desktops/deepin/go-lib/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/deepin/go-lib/default.nix b/pkgs/desktops/deepin/go-lib/default.nix
index ad4e725f0f59..684f1dd7f32d 100644
--- a/pkgs/desktops/deepin/go-lib/default.nix
+++ b/pkgs/desktops/deepin/go-lib/default.nix
@@ -4,13 +4,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "go-lib";
-  version = "1.2.16.3";
+  version = "1.3.0";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "0dk6k53in3ffwwvkr0sazfk83rf4fyc6rvb6k8fi2n3qj4gp8xd2";
+    sha256 = "0g84v1adnnyqc1mv45n3wlvnivkm1fi8ywszzgwx8irl3iddfvxv";
   };
 
   buildInputs = [

From 405b06763bde321fb0d2784340a7931b2f355d38 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 30 Oct 2018 21:16:21 -0300
Subject: [PATCH 0943/1129] deepin.qt5dxcb-plugin: 1.1.11 -> 1.1.13

---
 pkgs/desktops/deepin/qt5dxcb-plugin/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/deepin/qt5dxcb-plugin/default.nix b/pkgs/desktops/deepin/qt5dxcb-plugin/default.nix
index dbfe70769762..c4ce0ca563bd 100644
--- a/pkgs/desktops/deepin/qt5dxcb-plugin/default.nix
+++ b/pkgs/desktops/deepin/qt5dxcb-plugin/default.nix
@@ -4,13 +4,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "qt5dxcb-plugin";
-  version = "1.1.11";
+  version = "1.1.13";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "157p2cqs9fvd4n4fmxj6mh4cxlc35bkl4rnf832wk2gvjnxdfrfy";
+    sha256 = "12lvh3agw3qdviqf32brmzba5kscnj5al5jhc08lq69a9kmip05x";
   };
 
   nativeBuildInputs = [

From d5cb0bc3b3f85273408a0d877f02bc93f854f61b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 30 Oct 2018 21:16:21 -0300
Subject: [PATCH 0944/1129] deepin.qt5integration: 0.3.5 -> 0.3.6

---
 pkgs/desktops/deepin/qt5integration/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/deepin/qt5integration/default.nix b/pkgs/desktops/deepin/qt5integration/default.nix
index 7ffdf16cdb33..809156377225 100644
--- a/pkgs/desktops/deepin/qt5integration/default.nix
+++ b/pkgs/desktops/deepin/qt5integration/default.nix
@@ -5,13 +5,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "qt5integration";
-  version = "0.3.5";
+  version = "0.3.6";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "0qf9ndsg8pz2n68y68a30d1hxr3ri8k4j00dxlbcf5cn5mbnny1b";
+    sha256 = "1v9whlqn07c5c8xnaiicdshj9n88a667gfbn8y8bk5bfylilfzcy";
   };
 
   nativeBuildInputs = [

From fe715b1f319e626408c4bcbfc08dd3c8044452e9 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Thu, 8 Nov 2018 23:37:00 -0200
Subject: [PATCH 0945/1129] deepin.deepin-gtk-theme: 17.10.9 -> 17.10.10

---
 pkgs/desktops/deepin/deepin-gtk-theme/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/deepin/deepin-gtk-theme/default.nix b/pkgs/desktops/deepin/deepin-gtk-theme/default.nix
index d00bf86bc2c2..8d11ca8bf42a 100644
--- a/pkgs/desktops/deepin/deepin-gtk-theme/default.nix
+++ b/pkgs/desktops/deepin/deepin-gtk-theme/default.nix
@@ -3,13 +3,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "deepin-gtk-theme";
-  version = "17.10.9";
+  version = "17.10.10";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = "deepin-gtk-theme";
     rev = version;
-    sha256 = "02yn76h007hlmrd7syd82f0mz1c79rlkz3gy1w17zxfy0gdvagz3";
+    sha256 = "0vwly24cvjwhvda7g3l595vpf99d2z7b2zr0q5kna4df4iql7vn4";
   };
 
   propagatedUserEnvPkgs = [ gtk-engine-murrine ];

From e1418d9372a474523cc826602299eb4e1fcbe734 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Thu, 8 Nov 2018 23:37:00 -0200
Subject: [PATCH 0946/1129] deepin.deepin-icon-theme: 15.12.59 -> 15.12.64

---
 pkgs/desktops/deepin/deepin-icon-theme/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/deepin/deepin-icon-theme/default.nix b/pkgs/desktops/deepin/deepin-icon-theme/default.nix
index 47368ac686ed..ef4574206019 100644
--- a/pkgs/desktops/deepin/deepin-icon-theme/default.nix
+++ b/pkgs/desktops/deepin/deepin-icon-theme/default.nix
@@ -3,13 +3,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "deepin-icon-theme";
-  version = "15.12.59";
+  version = "15.12.64";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "1qkxhqx6a7pahkjhf6m9lm16lw9v9grk0d4j449h9622zwfjkxlq";
+    sha256 = "0z1yrp6yg2hb67azrbd9ac743jjh83vxdf2j0mmv2lfpd4fqw8qc";
   };
 
   nativeBuildInputs = [ gtk3 papirus-icon-theme ];

From 02931474a71ba779d374e7e8682fa4f21ff27892 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Sat, 10 Nov 2018 08:09:34 -0200
Subject: [PATCH 0947/1129] deepin.deepin-mutter: 3.20.34 -> 3.20.35

---
 pkgs/desktops/deepin/deepin-mutter/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/deepin/deepin-mutter/default.nix b/pkgs/desktops/deepin/deepin-mutter/default.nix
index efa36dd66040..be845d3c6bac 100644
--- a/pkgs/desktops/deepin/deepin-mutter/default.nix
+++ b/pkgs/desktops/deepin/deepin-mutter/default.nix
@@ -5,13 +5,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "deepin-mutter";
-  version = "3.20.34";
+  version = "3.20.35";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "0s427fmj806ljpdg6jdvpfislk5m1xvxpnnyrq3l8b7pkhjvp8wd";
+    sha256 = "0mwk06kgw8qp8rg1j6px1zlya4x5rr9llax0qks59j56b3m9yim7";
   };
 
   nativeBuildInputs = [

From 7bfab6e5eb4291f6e0785629668d4210a7b256a3 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Thu, 8 Nov 2018 23:37:01 -0200
Subject: [PATCH 0948/1129] deepin.deepin-wm: 1.9.32 -> 1.9.33

---
 pkgs/desktops/deepin/deepin-wm/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/deepin/deepin-wm/default.nix b/pkgs/desktops/deepin/deepin-wm/default.nix
index 66aec528f379..db60e7b499b0 100644
--- a/pkgs/desktops/deepin/deepin-wm/default.nix
+++ b/pkgs/desktops/deepin/deepin-wm/default.nix
@@ -6,13 +6,13 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "deepin-wm";
-  version = "1.9.32";
+  version = "1.9.33";
 
   src = fetchFromGitHub {
     owner = "linuxdeepin";
     repo = pname;
     rev = version;
-    sha256 = "02vwbkfpxcwv01vqa70pg7dm0lhm1lwhdqhk057r147a9cjb3ssc";
+    sha256 = "01l2np31g7fnh61fgq927h7a6xrmdvagqd41vr29a6cc3q9q9rzv";
   };
 
   nativeBuildInputs = [

From fc0d64e72dc6c26857713eeed057b3d667783100 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Sat, 10 Nov 2018 11:24:34 -0200
Subject: [PATCH 0949/1129] deepin: remove obseleted dde-polkit-agent and
 dpa-ext-gnomekeyring

---
 .../deepin/dde-polkit-agent/default.nix       | 48 -------------------
 pkgs/desktops/deepin/default.nix              |  2 -
 .../deepin/dpa-ext-gnomekeyring/default.nix   | 43 -----------------
 3 files changed, 93 deletions(-)
 delete mode 100644 pkgs/desktops/deepin/dde-polkit-agent/default.nix
 delete mode 100644 pkgs/desktops/deepin/dpa-ext-gnomekeyring/default.nix

diff --git a/pkgs/desktops/deepin/dde-polkit-agent/default.nix b/pkgs/desktops/deepin/dde-polkit-agent/default.nix
deleted file mode 100644
index e5d1df6d53b5..000000000000
--- a/pkgs/desktops/deepin/dde-polkit-agent/default.nix
+++ /dev/null
@@ -1,48 +0,0 @@
-{ stdenv, fetchFromGitHub, pkgconfig, qmake, qttools, polkit-qt,
-  dtkcore, dtkwidget, dde-qt-dbus-factory, deepin }:
-
-stdenv.mkDerivation rec {
-  name = "${pname}-${version}";
-  pname = "dde-polkit-agent";
-  version = "0.2.1";
-
-  src = fetchFromGitHub {
-    owner = "linuxdeepin";
-    repo = pname;
-    rev = version;
-    sha256 = "1n3hys5hhhd99ycpx4im6ihy53vl9c28z7ls7smn117h3ca4c8wc";
-  };
-
-  nativeBuildInputs = [
-    pkgconfig
-    qmake
-    qttools
-  ];
-
-  buildInputs = [
-    dde-qt-dbus-factory
-    dtkcore
-    dtkwidget
-    polkit-qt
-  ];
-
-  postPatch = ''
-    patchShebangs .
-
-    sed -i dde-polkit-agent.pro polkit-dde-authentication-agent-1.desktop \
-      -e "s,/usr,$out,"
-
-    sed -i pluginmanager.cpp \
-      -e "s,/usr/lib/polkit-1-dde/plugins,/run/current-system/sw/lib/polkit-1-dde/plugins,"
-  '';
-
-  passthru.updateScript = deepin.updateScript { inherit name; };
-
-  meta = with stdenv.lib; {
-    description = "PolicyKit agent for Deepin Desktop Environment";
-    homepage = https://github.com/linuxdeepin/dde-polkit-agent;
-    license = licenses.gpl3;
-    platforms = platforms.linux;
-    maintainers = with maintainers; [ romildo ];
-  };
-}
diff --git a/pkgs/desktops/deepin/default.nix b/pkgs/desktops/deepin/default.nix
index ca279679e832..62a67c11492b 100644
--- a/pkgs/desktops/deepin/default.nix
+++ b/pkgs/desktops/deepin/default.nix
@@ -8,7 +8,6 @@ let
     dde-api = callPackage ./dde-api { };
     dde-calendar = callPackage ./dde-calendar { };
     dde-daemon = callPackage ./dde-daemon { };
-    dde-polkit-agent = callPackage ./dde-polkit-agent { };
     dde-qt-dbus-factory = callPackage ./dde-qt-dbus-factory { };
     dde-session-ui = callPackage ./dde-session-ui { };
     deepin-desktop-base = callPackage ./deepin-desktop-base { };
@@ -29,7 +28,6 @@ let
     };
     deepin-wallpapers = callPackage ./deepin-wallpapers { };
     deepin-wm = callPackage ./deepin-wm { };
-    dpa-ext-gnomekeyring = callPackage ./dpa-ext-gnomekeyring { };
     dtkcore = callPackage ./dtkcore { };
     dtkwm = callPackage ./dtkwm { };
     dtkwidget = callPackage ./dtkwidget { };
diff --git a/pkgs/desktops/deepin/dpa-ext-gnomekeyring/default.nix b/pkgs/desktops/deepin/dpa-ext-gnomekeyring/default.nix
deleted file mode 100644
index c9af2930500d..000000000000
--- a/pkgs/desktops/deepin/dpa-ext-gnomekeyring/default.nix
+++ /dev/null
@@ -1,43 +0,0 @@
-{ stdenv, fetchFromGitHub, pkgconfig, qmake, qttools, gnome3,
-  dde-polkit-agent, deepin }:
-
-stdenv.mkDerivation rec {
-  name = "${pname}-${version}";
-  pname = "dpa-ext-gnomekeyring";
-  version = "0.1.0";
-
-  src = fetchFromGitHub {
-    owner = "linuxdeepin";
-    repo = pname;
-    rev = version;
-    sha256 = "168j42nwyw7vcgwc0fha2pjpwwlgir70fq1hns4ia1dkdqa1nhzw";
-  };
-
-  nativeBuildInputs = [
-    pkgconfig
-    qmake
-    qttools
-  ];
-
-  buildInputs = [
-    dde-polkit-agent
-    gnome3.libgnome-keyring
-  ];
-
-  postPatch = ''
-    patchShebangs .
-
-    sed -i dpa-ext-gnomekeyring.pro gnomekeyringextention.cpp \
-      -e "s,/usr,$out,"
-  '';
-
-  passthru.updateScript = deepin.updateScript { inherit name; };
-
-  meta = with stdenv.lib; {
-    description = "GNOME keyring extension for dde-polkit-agent";
-    homepage = https://github.com/linuxdeepin/dpa-ext-gnomekeyring;
-    license = licenses.gpl3;
-    platforms = platforms.linux;
-    maintainers = with maintainers; [ romildo ];
-  };
-}

From fbe08fe1dc4c842343bcd3c4780c357acff7368c Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 06:42:24 -0800
Subject: [PATCH 0950/1129] checkstyle: 8.13 -> 8.14 (#50133)

* checkstyle: 8.13 -> 8.14

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/checkstyle/versions

* checkstyle: jre is a runtime deps
---
 pkgs/development/tools/analysis/checkstyle/default.nix | 7 ++++---
 1 file changed, 4 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/tools/analysis/checkstyle/default.nix b/pkgs/development/tools/analysis/checkstyle/default.nix
index d99ab3df75ef..6da3d067c3ae 100644
--- a/pkgs/development/tools/analysis/checkstyle/default.nix
+++ b/pkgs/development/tools/analysis/checkstyle/default.nix
@@ -1,15 +1,16 @@
 { stdenv, fetchurl, makeWrapper, jre }:
 
 stdenv.mkDerivation rec {
-  version = "8.13";
+  version = "8.14";
   name = "checkstyle-${version}";
 
   src = fetchurl {
     url = "https://github.com/checkstyle/checkstyle/releases/download/checkstyle-${version}/checkstyle-${version}-all.jar";
-    sha256 = "05w60yg5ghjdg36k4xd8m0yyfia9viyz51j053030b74bq65yvai";
+    sha256 = "11lpyjh0rbz8821q0gcrll5ichf8hrmlfy66ary5jjiyxc85z762";
   };
 
-  nativeBuildInputs = [ makeWrapper jre ];
+  nativeBuildInputs = [ makeWrapper ];
+  buildInputs = [ jre ];
 
   unpackPhase = ":";
 

From 1b6c6b11b0692053f6f364607962da069b420272 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 06:44:09 -0800
Subject: [PATCH 0951/1129] python36Packages.google_cloud_speech: 0.35.0 ->
 0.36.0 (#49992)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-google-cloud-speech/versions
---
 .../python-modules/google_cloud_speech/default.nix            | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/google_cloud_speech/default.nix b/pkgs/development/python-modules/google_cloud_speech/default.nix
index f404c68921d4..6a8aefa92c42 100644
--- a/pkgs/development/python-modules/google_cloud_speech/default.nix
+++ b/pkgs/development/python-modules/google_cloud_speech/default.nix
@@ -3,11 +3,11 @@
 
 buildPythonPackage rec {
   pname = "google-cloud-speech";
-  version = "0.35.0";
+  version = "0.36.0";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "5db2d69315b3d95d067c9bffe17994b6ee9252702888cc300d76252b451638e1";
+    sha256 = "1jjicvf5r20ibhkkay0p6av8jifvp2wkdd8bs9vmhm4rwvcnlxbf";
   };
 
   propagatedBuildInputs = [ google_api_core ];

From 590a76a5a9704d5fd06122bfbc8ab9fe951d0533 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 06:44:34 -0800
Subject: [PATCH 0952/1129] python36Packages.filelock: 3.0.9 -> 3.0.10 (#49993)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-filelock/versions
---
 pkgs/development/python-modules/filelock/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/filelock/default.nix b/pkgs/development/python-modules/filelock/default.nix
index 80e3429b644a..a548f1ab5d2e 100644
--- a/pkgs/development/python-modules/filelock/default.nix
+++ b/pkgs/development/python-modules/filelock/default.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "filelock";
-  version = "3.0.9";
+  version = "3.0.10";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "97694f181bdf58f213cca0a7cb556dc7bf90e2f8eb9aa3151260adac56701afb";
+    sha256 = "1rjv7g85smh6hrq6n9h721kh83qjv8mfp0ksdnbqbbsd82xw246n";
   };
 
   meta = with stdenv.lib; {

From 69f70ad18a303e4b7782f3bb53d5accd3ca8698a Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 06:46:36 -0800
Subject: [PATCH 0953/1129] mixxx: 2.1.4 -> 2.1.5 (#50043)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/mixxx/versions
---
 pkgs/applications/audio/mixxx/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/audio/mixxx/default.nix b/pkgs/applications/audio/mixxx/default.nix
index a5582f908fc0..a99683ef9942 100644
--- a/pkgs/applications/audio/mixxx/default.nix
+++ b/pkgs/applications/audio/mixxx/default.nix
@@ -8,13 +8,13 @@
 
 stdenv.mkDerivation rec {
   name = "mixxx-${version}";
-  version = "2.1.4";
+  version = "2.1.5";
 
   src = fetchFromGitHub {
     owner = "mixxxdj";
     repo = "mixxx";
     rev = "release-${version}";
-    sha256 = "1q1px4033marraprvgr5yq9jlz943kcc10fdkn7py2ma8cfgnipq";
+    sha256 = "0h14pwglz03sdmgzviypv1qa1xfjclrnhyqaq5nd60j47h4z39dr";
   };
 
   nativeBuildInputs = [ makeWrapper ];

From 092deb9cf8378a0950574d714a60d7767da0fda1 Mon Sep 17 00:00:00 2001
From: hlolli <hlolli@gmail.com>
Date: Sat, 10 Nov 2018 15:55:39 +0100
Subject: [PATCH 0954/1129] add myself (hlolli) to maintainers list

---
 maintainers/maintainer-list.nix | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index 5f47c859a8ec..d2a410a8f361 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -1577,6 +1577,11 @@
     email = "t@larkery.com";
     name = "Tom Hinton";
   };
+  hlolli = {
+    email = "hlolli@gmail.com";
+    github = "hlolli";
+    name = "Hlodver Sigurdsson";
+  };
   hodapp = {
     email = "hodapp87@gmail.com";
     github = "Hodapp87";

From 0270dda6b4fdc15d9cdc83cf74b91adb3e7c6e5f Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Tue, 6 Nov 2018 22:28:42 -0500
Subject: [PATCH 0955/1129] pythonPackages.prompt_toolkit: init at 2.0.7

---
 .../python-modules/prompt_toolkit/1.nix       | 38 +++++++++++++++++++
 .../python-modules/prompt_toolkit/default.nix | 11 ++----
 pkgs/top-level/python-packages.nix            |  5 ++-
 3 files changed, 46 insertions(+), 8 deletions(-)
 create mode 100644 pkgs/development/python-modules/prompt_toolkit/1.nix

diff --git a/pkgs/development/python-modules/prompt_toolkit/1.nix b/pkgs/development/python-modules/prompt_toolkit/1.nix
new file mode 100644
index 000000000000..e9d44c83f1db
--- /dev/null
+++ b/pkgs/development/python-modules/prompt_toolkit/1.nix
@@ -0,0 +1,38 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, pytest
+, docopt
+, six
+, wcwidth
+, pygments
+}:
+
+buildPythonPackage rec {
+  pname = "prompt_toolkit";
+  version = "1.0.15";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "858588f1983ca497f1cf4ffde01d978a3ea02b01c8a26a8bbc5cd2e66d816917";
+  };
+  checkPhase = ''
+    rm prompt_toolkit/win32_types.py
+    py.test -k 'not test_pathcompleter_can_expanduser'
+  '';
+
+  checkInputs = [ pytest ];
+  propagatedBuildInputs = [ docopt six wcwidth pygments ];
+
+  meta = {
+    description = "Python library for building powerful interactive command lines";
+    longDescription = ''
+      prompt_toolkit could be a replacement for readline, but it can be
+      much more than that. It is cross-platform, everything that you build
+      with it should run fine on both Unix and Windows systems. Also ships
+      with a nice interactive Python shell (called ptpython) built on top.
+    '';
+    homepage = https://github.com/jonathanslenders/python-prompt-toolkit;
+    license = lib.licenses.bsd3;
+  };
+}
diff --git a/pkgs/development/python-modules/prompt_toolkit/default.nix b/pkgs/development/python-modules/prompt_toolkit/default.nix
index 69a2f47d05ff..cd0df6c52be7 100644
--- a/pkgs/development/python-modules/prompt_toolkit/default.nix
+++ b/pkgs/development/python-modules/prompt_toolkit/default.nix
@@ -2,27 +2,24 @@
 , buildPythonPackage
 , fetchPypi
 , pytest
-, docopt
 , six
 , wcwidth
-, pygments
 }:
 
 buildPythonPackage rec {
   pname = "prompt_toolkit";
-  version = "1.0.15";
+  version = "2.0.7";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "858588f1983ca497f1cf4ffde01d978a3ea02b01c8a26a8bbc5cd2e66d816917";
+    sha256 = "0fgacqk73w7s932vy46pan2yp8rvjmlkag20xvaydh9mhf6h85zx";
   };
   checkPhase = ''
-    rm prompt_toolkit/win32_types.py
     py.test -k 'not test_pathcompleter_can_expanduser'
   '';
 
   checkInputs = [ pytest ];
-  propagatedBuildInputs = [ docopt six wcwidth pygments ];
+  propagatedBuildInputs = [ six wcwidth ];
 
   meta = {
     description = "Python library for building powerful interactive command lines";
@@ -35,4 +32,4 @@ buildPythonPackage rec {
     homepage = https://github.com/jonathanslenders/python-prompt-toolkit;
     license = lib.licenses.bsd3;
   };
-}
\ No newline at end of file
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 397ae5c362f3..7d8415049a44 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -3757,8 +3757,11 @@ in {
     };
   };
 
+  prompt_toolkit = self.prompt_toolkit_1;
 
-  prompt_toolkit = callPackage ../development/python-modules/prompt_toolkit { };
+  prompt_toolkit_1 = callPackage ../development/python-modules/prompt_toolkit/1.nix { };
+
+  prompt_toolkit_2 = callPackage ../development/python-modules/prompt_toolkit { };
 
   protobuf = callPackage ../development/python-modules/protobuf {
     disabled = isPyPy;

From 8c8d3c74c5ca303efc91f5eba0ba931e9c617697 Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Tue, 6 Nov 2018 22:37:44 -0500
Subject: [PATCH 0956/1129] pgcli: 1.11.0 -> 2.0.0

---
 .../tools/database/pgcli/default.nix          | 26 +++++++++----------
 1 file changed, 12 insertions(+), 14 deletions(-)

diff --git a/pkgs/development/tools/database/pgcli/default.nix b/pkgs/development/tools/database/pgcli/default.nix
index bc1c2515bfa7..73e343833383 100644
--- a/pkgs/development/tools/database/pgcli/default.nix
+++ b/pkgs/development/tools/database/pgcli/default.nix
@@ -1,27 +1,25 @@
 { lib, pythonPackages, fetchFromGitHub }:
 
 pythonPackages.buildPythonApplication rec {
-  name = "pgcli-${version}";
-  version = "1.11.0";
+  pname = "pgcli";
+  version = "2.0.0";
 
-  src = fetchFromGitHub {
-    owner = "dbcli";
-    repo = "pgcli";
-    rev = "v${version}";
-    sha256 = "01qcvl0iwabinq3sb4340js8v3sbwkbxi64sg4xy76wj8xr6kgsk";
+  src = pythonPackages.fetchPypi {
+    inherit pname version;
+    sha256 = "085fna5nc72nfj1gw0m4ia6wzayinqaffmjy3ajldha1727vqwzi";
   };
 
-  buildInputs = with pythonPackages; [ pytest mock ];
-  checkPhase = ''
-    mkdir /tmp/homeless-shelter
-    HOME=/tmp/homeless-shelter py.test tests -k 'not test_missing_rc_dir and not test_quoted_db_uri and not test_port_db_uri'
-  '';
-
   propagatedBuildInputs = with pythonPackages; [
-    cli-helpers click configobj humanize prompt_toolkit psycopg2
+    cli-helpers click configobj humanize prompt_toolkit_2 psycopg2
     pygments sqlparse pgspecial setproctitle keyring
   ];
 
+  checkInputs = with pythonPackages; [ pytest mock ];
+
+  checkPhase = ''
+    py.test
+  '';
+
   meta = with lib; {
     description = "Command-line interface for PostgreSQL";
     longDescription = ''

From a3cb3fb64b3035d1b40c05f9d9df6b141ca6ffd9 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Sat, 10 Nov 2018 16:27:47 +0100
Subject: [PATCH 0957/1129] openmpi: refactor version string for auto updates

---
 pkgs/development/libraries/openmpi/default.nix | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

diff --git a/pkgs/development/libraries/openmpi/default.nix b/pkgs/development/libraries/openmpi/default.nix
index c98249e89c4d..345dffa87f5b 100644
--- a/pkgs/development/libraries/openmpi/default.nix
+++ b/pkgs/development/libraries/openmpi/default.nix
@@ -9,14 +9,13 @@
 }:
 
 let
-  majorVersion = "3.1";
-  minorVersion = "3";
+  version = "3.1.3";
 
 in stdenv.mkDerivation rec {
-  name = "openmpi-${majorVersion}.${minorVersion}";
+  name = "openmpi-${version}";
 
-  src = fetchurl {
-    url = "http://www.open-mpi.org/software/ompi/v${majorVersion}/downloads/${name}.tar.bz2";
+  src = with stdenv.lib.versions; fetchurl {
+    url = "http://www.open-mpi.org/software/ompi/v${major version}.${minor version}/downloads/${name}.tar.bz2";
     sha256 = "1dks11scivgaskjs5955y9wprsl12wr3gn5r7wfl0l8gq03l7q4b";
   };
 

From b6b4f702ff48f9549cdbe5c1e7ea3059b99324a9 Mon Sep 17 00:00:00 2001
From: Stephen <stephengroat@users.noreply.github.com>
Date: Sat, 10 Nov 2018 07:49:56 -0800
Subject: [PATCH 0958/1129] terragrunt: 0.16.6 -> 0.17.2 (#50036)

---
 pkgs/applications/networking/cluster/terragrunt/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/cluster/terragrunt/default.nix b/pkgs/applications/networking/cluster/terragrunt/default.nix
index f35269eb2712..1fe9ad5ccc83 100644
--- a/pkgs/applications/networking/cluster/terragrunt/default.nix
+++ b/pkgs/applications/networking/cluster/terragrunt/default.nix
@@ -2,7 +2,7 @@
 
 buildGoPackage rec {
   name = "terragrunt-${version}";
-  version = "0.16.6";
+  version = "0.17.2";
 
   goPackagePath = "github.com/gruntwork-io/terragrunt";
 
@@ -10,7 +10,7 @@ buildGoPackage rec {
     owner  = "gruntwork-io";
     repo   = "terragrunt";
     rev    = "v${version}";
-    sha256 = "0fzn2ymk8x0lzwfqlvnry8s6wf3q0sqn76lfardjyz6wgxl8011i";
+    sha256 = "069l9ynyl96rfs9zw6w6n1yzjjin27731nj1ajr9jsyc8rhd84wv";
   };
 
   goDeps = ./deps.nix;

From cb96801d7020e54ff242d2ce16af7821ca14cb06 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 07:51:41 -0800
Subject: [PATCH 0959/1129] caf: 0.16.0 -> 0.16.2

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/actor-framework/versions
---
 pkgs/development/libraries/caf/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/caf/default.nix b/pkgs/development/libraries/caf/default.nix
index 09c1560d6f60..f1cad37d438f 100644
--- a/pkgs/development/libraries/caf/default.nix
+++ b/pkgs/development/libraries/caf/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "actor-framework-${version}";
-  version = "0.16.0";
+  version = "0.16.2";
 
   src = fetchFromGitHub {
     owner = "actor-framework";
     repo = "actor-framework";
     rev = "${version}";
-    sha256 = "01i6sclxwa7k91ngi7jw9vlss8wjpv1hz4y5934jq0lx8hdf7s02";
+    sha256 = "0sdr9mrrkrj9nfwqbznz3pkqfsnsi8kanfy99x01js1spqihy1s3";
   };
 
   nativeBuildInputs = [ cmake ];

From 6738ceac87c7d4d4a45024c0f9799d5c1b374d11 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 08:12:45 -0800
Subject: [PATCH 0960/1129] bdf2psf: 1.185 -> 1.187

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/bdf2psf/versions
---
 pkgs/tools/misc/bdf2psf/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/misc/bdf2psf/default.nix b/pkgs/tools/misc/bdf2psf/default.nix
index c9775ac6ae35..ac6f8c97c7b6 100644
--- a/pkgs/tools/misc/bdf2psf/default.nix
+++ b/pkgs/tools/misc/bdf2psf/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "bdf2psf-${version}";
-  version = "1.185";
+  version = "1.187";
 
   src = fetchurl {
     url = "mirror://debian/pool/main/c/console-setup/bdf2psf_${version}_all.deb";
-    sha256 = "0i8ppqj6yhdkvjkwfl588f2zpaybj61pq64bhlnmc8c4snwpn1z6";
+    sha256 = "05r5jg7n4hbdxcy3kc7038h1r0fkipwld6kd0d49nbkmywl2k1a8";
   };
 
   buildInputs = [ dpkg ];

From 1e17b4b2dcf256fb034c61fa28072f38029279af Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 08:19:17 -0800
Subject: [PATCH 0961/1129] bftpd: 4.9 -> 5.0

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/bftpd/versions
---
 pkgs/servers/ftp/bftpd/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/ftp/bftpd/default.nix b/pkgs/servers/ftp/bftpd/default.nix
index c35177e6aa90..02bf714a42bf 100644
--- a/pkgs/servers/ftp/bftpd/default.nix
+++ b/pkgs/servers/ftp/bftpd/default.nix
@@ -5,11 +5,11 @@ let
 
 in stdenv.mkDerivation rec {
   name = "${pname}-${version}";
-  version = "4.9";
+  version = "5.0";
 
   src = fetchurl {
     url = "mirror://sourceforge/project/${pname}/${pname}/${name}/${name}.tar.gz";
-    sha256 = "13pjil9cjggpi773m0516lszyqvwzlgcrmmj8yn9nc24rbxwvn6d";
+    sha256 = "1qagqsbg7zblkhg3vrj47k5f1q09r4az7gna86rxf253kmg90yqp";
   };
 
   preConfigure = ''

From 21fbc6140ed2139e813e320dd3f8a4a1a43412e5 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 08:26:03 -0800
Subject: [PATCH 0962/1129] bind: 9.12.2-P2 -> 9.12.3

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/bind/versions
---
 pkgs/servers/dns/bind/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/dns/bind/default.nix b/pkgs/servers/dns/bind/default.nix
index 10236ee55e8c..49d11a51617c 100644
--- a/pkgs/servers/dns/bind/default.nix
+++ b/pkgs/servers/dns/bind/default.nix
@@ -8,14 +8,14 @@
 assert enableSeccomp -> libseccomp != null;
 assert enablePython -> python3 != null;
 
-let version = "9.12.2-P2"; in
+let version = "9.12.3"; in
 
 stdenv.mkDerivation rec {
   name = "bind-${version}";
 
   src = fetchurl {
     url = "https://ftp.isc.org/isc/bind9/${version}/${name}.tar.gz";
-    sha256 = "0gk9vwqlbdmn10m21f2awvmiccfbadvcwi8zsgm91awbx4k7h0l7";
+    sha256 = "0f5rjs6zsq8sp6iv5r4q5y65xv05dk2sgvsj6lcir3i564k7d00f";
   };
 
   outputs = [ "out" "lib" "dev" "man" "dnsutils" "host" ];

From f000dd513d50afc42ca065073736baf81fb41928 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 08:32:24 -0800
Subject: [PATCH 0963/1129] bs1770gain: 0.5.0 -> 0.5.1

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/bs1770gain/versions
---
 pkgs/applications/audio/bs1770gain/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/audio/bs1770gain/default.nix b/pkgs/applications/audio/bs1770gain/default.nix
index edf7a313ff5f..44296d3c8b99 100644
--- a/pkgs/applications/audio/bs1770gain/default.nix
+++ b/pkgs/applications/audio/bs1770gain/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "bs1770gain-${version}";
-  version = "0.5.0";
+  version = "0.5.1";
 
   src = fetchurl {
     url = "mirror://sourceforge/bs1770gain/${name}.tar.gz";
-    sha256 = "0vd7320k7s2zcn2vganclxbr1vav18ghld27rcwskvcc3dm8prii";
+    sha256 = "0r4fbajgfmnwgl63hcm56f1j8m5f135q6j5jkzdvrrhpcj39yx06";
   };
 
   buildInputs = [ ffmpeg sox ];

From 02fdfdda9de4293ea61bf2f660dc132932016685 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 09:07:36 -0800
Subject: [PATCH 0964/1129] adapta-gtk-theme: 3.95.0.1 -> 3.95.0.11

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/adapta-gtk-theme/versions
---
 pkgs/misc/themes/adapta/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/misc/themes/adapta/default.nix b/pkgs/misc/themes/adapta/default.nix
index 0c144b567418..cb281e68dfd7 100644
--- a/pkgs/misc/themes/adapta/default.nix
+++ b/pkgs/misc/themes/adapta/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "adapta-gtk-theme-${version}";
-  version = "3.95.0.1";
+  version = "3.95.0.11";
 
   src = fetchFromGitHub {
     owner = "adapta-project";
     repo = "adapta-gtk-theme";
     rev = version;
-    sha256 = "0hc3ar55wjg51qf8c7h0nix0lyqs16mk1d4hhxyv102zq4l5fz97";
+    sha256 = "19skrhp10xx07hbd0lr3d619vj2im35d8p9rmb4v4zacci804q04";
   };
 
   preferLocalBuild = true;

From 7b9632af82369d6f12e95e430910c9a0b2e4d2ed Mon Sep 17 00:00:00 2001
From: Vladyslav Mykhailichenko <dywedir@pm.me>
Date: Sat, 10 Nov 2018 19:08:23 +0200
Subject: [PATCH 0965/1129] iwd: 0.9 -> 0.11

---
 pkgs/os-specific/linux/iwd/default.nix | 11 ++++++-----
 1 file changed, 6 insertions(+), 5 deletions(-)

diff --git a/pkgs/os-specific/linux/iwd/default.nix b/pkgs/os-specific/linux/iwd/default.nix
index f30eac588a2f..762b46bb5526 100644
--- a/pkgs/os-specific/linux/iwd/default.nix
+++ b/pkgs/os-specific/linux/iwd/default.nix
@@ -1,23 +1,24 @@
-{ stdenv, fetchgit, autoreconfHook, coreutils, readline, python3Packages }:
+{ stdenv, fetchgit, autoreconfHook, pkgconfig, coreutils, readline, python3Packages }:
 
 let
   ell = fetchgit {
      url = https://git.kernel.org/pub/scm/libs/ell/ell.git;
-     rev = "0.11";
-     sha256 = "0nifa5w6fxy7cagyas2a0zhcppi83yrcsnnp70ls2rc90x4r1ip8";
+     rev = "0.14";
+     sha256 = "13jlmdk47pscmfs3c12awfwr3m6ka4fh6fyr9cl1bmqdpwqmmmk6";
   };
 in stdenv.mkDerivation rec {
   name = "iwd-${version}";
-  version = "0.9";
+  version = "0.11";
 
   src = fetchgit {
     url = https://git.kernel.org/pub/scm/network/wireless/iwd.git;
     rev = version;
-    sha256 = "1l1jbwsshjbz32s4rf0zfcn3fd16si4y9qa0zaxp00bfzflnpcd4";
+    sha256 = "0q79rdj3h16xdf0g2jdsvb2141z36z89vgzq0qn31pxzhgxdgf7j";
   };
 
   nativeBuildInputs = [
     autoreconfHook
+    pkgconfig
     python3Packages.wrapPython
   ];
 

From f72bc25f79b91eaed614e483dada379aa176f9ae Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 09:16:48 -0800
Subject: [PATCH 0966/1129] appstream: 0.12.2 -> 0.12.3

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/appstream/versions
---
 pkgs/development/libraries/appstream/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/appstream/default.nix b/pkgs/development/libraries/appstream/default.nix
index 5e4218852e51..19b82fcffa38 100644
--- a/pkgs/development/libraries/appstream/default.nix
+++ b/pkgs/development/libraries/appstream/default.nix
@@ -6,13 +6,13 @@
 
 stdenv.mkDerivation rec {
   name = "appstream-${version}";
-  version = "0.12.2";
+  version = "0.12.3";
 
   src = fetchFromGitHub {
     owner  = "ximion";
     repo   = "appstream";
     rev    = "APPSTREAM_${stdenv.lib.replaceStrings ["."] ["_"] version}";
-    sha256 = "1g15c4bhyl730rgaiqia3jppraixh05c3yx098lyilidbddxp5xb";
+    sha256 = "154yfn10vm5v7vwa2jz60bgpcznzm3nkjg31g92rm9b39rd2y1ja";
   };
 
   nativeBuildInputs = [

From 13208cbf4645d70586f2d7c7e417264e556db93e Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 09:21:36 -0800
Subject: [PATCH 0967/1129] cabextract: 1.7 -> 1.9

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/cabextract/versions
---
 pkgs/tools/archivers/cabextract/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/archivers/cabextract/default.nix b/pkgs/tools/archivers/cabextract/default.nix
index 238ee3646071..edc70e6c601b 100644
--- a/pkgs/tools/archivers/cabextract/default.nix
+++ b/pkgs/tools/archivers/cabextract/default.nix
@@ -1,11 +1,11 @@
 { stdenv, fetchurl }:
 
 stdenv.mkDerivation rec {
-  name = "cabextract-1.7";
+  name = "cabextract-1.9";
 
   src = fetchurl {
     url = "https://www.cabextract.org.uk/${name}.tar.gz";
-    sha256 = "1g86wmb8lkjiv2jarfz979ngbgg7d3si8x5il4g801604v406wi9";
+    sha256 = "1hf4zhjxfdgq9x172r5zfdnafma9q0zf7372syn8hcn7hcypkg0v";
   };
 
   meta = with stdenv.lib; {

From 6be642542ef99763d05c8144b4b9d0bab9fc15a2 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 09:24:23 -0800
Subject: [PATCH 0968/1129] ansifilter: 2.10 -> 2.12

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ansifilter/versions
---
 pkgs/tools/text/ansifilter/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/text/ansifilter/default.nix b/pkgs/tools/text/ansifilter/default.nix
index 3e9511fefdaa..54591bf24424 100644
--- a/pkgs/tools/text/ansifilter/default.nix
+++ b/pkgs/tools/text/ansifilter/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "ansifilter-${version}";
-  version = "2.10";
+  version = "2.12";
 
   src = fetchurl {
     url = "http://www.andre-simon.de/zip/ansifilter-${version}.tar.bz2";
-    sha256 = "0gzfxfpic47cs2kqrbvaw166ji62c5nq5cjhh3ngpm2fkm1wzli3";
+    sha256 = "0ssvc51x90l1s9pxdxaw6ba01dcalrp0b5glrnh1j43i2pskc750";
 
   };
 

From 67c7685280a15a4fb00489ffdff9486b3c743644 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 09:30:11 -0800
Subject: [PATCH 0969/1129] armadillo: 9.100.5 -> 9.200.4

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/armadillo/versions
---
 pkgs/development/libraries/armadillo/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/armadillo/default.nix b/pkgs/development/libraries/armadillo/default.nix
index 16ba6b32382a..7685a0d9eb4f 100644
--- a/pkgs/development/libraries/armadillo/default.nix
+++ b/pkgs/development/libraries/armadillo/default.nix
@@ -1,12 +1,12 @@
 { stdenv, fetchurl, cmake, openblasCompat, superlu, hdf5 }:
 
 stdenv.mkDerivation rec {
-  version = "9.100.5";
+  version = "9.200.4";
   name = "armadillo-${version}";
 
   src = fetchurl {
     url = "mirror://sourceforge/arma/armadillo-${version}.tar.xz";
-    sha256 = "1ka1vd9fcmvp12qkcm4888dkfqwnalvv00x04wy29f3nx3qwczby";
+    sha256 = "0rkry405vacvlvkc7xdkzh20zf7yni9hsp65v0dby91na0wcrl8h";
   };
 
   nativeBuildInputs = [ cmake ];

From a649f1c0cdb7b618ab64c6bf33a66fbbc1507116 Mon Sep 17 00:00:00 2001
From: Benjamin Hipple <bhipple@protonmail.com>
Date: Sat, 10 Nov 2018 13:00:10 -0500
Subject: [PATCH 0970/1129] doc: fix default python interpreter

The default for `python3` is currently `python36`.
---
 doc/languages-frameworks/python.section.md | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/doc/languages-frameworks/python.section.md b/doc/languages-frameworks/python.section.md
index 907f4d9152a7..68bfbe05879b 100644
--- a/doc/languages-frameworks/python.section.md
+++ b/doc/languages-frameworks/python.section.md
@@ -484,11 +484,11 @@ and in this case the `python35` interpreter is automatically used.
 ### Interpreters
 
 Versions 2.7, 3.5, 3.6 and 3.7 of the CPython interpreter are available as
-respectively `python27`, `python35` and `python36`. The PyPy interpreter
-is available as `pypy`. The aliases `python2` and `python3` correspond to respectively `python27` and
-`python35`. The default interpreter, `python`, maps to `python2`.
-The Nix expressions for the interpreters can be found in
-`pkgs/development/interpreters/python`.
+respectively `python27`, `python35`, `python36`, and `python37`. The PyPy
+interpreter is available as `pypy`. The aliases `python2` and `python3`
+correspond to respectively `python27` and `python36`. The default interpreter,
+`python`, maps to `python2`. The Nix expressions for the interpreters can be
+found in `pkgs/development/interpreters/python`.
 
 All packages depending on any Python interpreter get appended
 `out/{python.sitePackages}` to `$PYTHONPATH` if such directory

From b90bc0b2e3343e5c609163e3ae8c185dfc8ff1c7 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 10:55:14 -0800
Subject: [PATCH 0971/1129] autofs5: 5.1.4 -> 5.1.5 (#50184)

* autofs5: 5.1.4 -> 5.1.5

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/autofs/versions

* autofs5: refresh meta
---
 pkgs/os-specific/linux/autofs/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/os-specific/linux/autofs/default.nix b/pkgs/os-specific/linux/autofs/default.nix
index 60ccad04eea4..38e2fa9bd344 100644
--- a/pkgs/os-specific/linux/autofs/default.nix
+++ b/pkgs/os-specific/linux/autofs/default.nix
@@ -2,14 +2,14 @@
 , libxml2, kerberos, kmod, openldap, sssd, cyrus_sasl, openssl }:
 
 let
-  version = "5.1.4";
+  version = "5.1.5";
   name = "autofs-${version}";
 in stdenv.mkDerivation {
   inherit name;
 
   src = fetchurl {
     url = "mirror://kernel/linux/daemons/autofs/v5/${name}.tar.xz";
-    sha256 = "08hpphawzcdibwbhw0r3y7hnfczlazpp90sf3bz2imgza7p31klg";
+    sha256 = "1nn0z60f49zchpv8yw67fk8hmbjszpnczs0bj2ql2vgxwbcxmbr3";
   };
 
   preConfigure = ''
@@ -40,8 +40,8 @@ in stdenv.mkDerivation {
 
   meta = {
     description = "Kernel-based automounter";
-    homepage = http://www.linux-consulting.com/Amd_AutoFS/autofs.html;
-    license = stdenv.lib.licenses.gpl2;
+    homepage = https://www.kernel.org/pub/linux/daemons/autofs/;
+    license = stdenv.lib.licenses.gpl2Plus;
     executables = [ "automount" ];
     platforms = stdenv.lib.platforms.linux;
   };

From d19b7e487cbbc3a113d88be864710a0912d3c46e Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Sat, 10 Nov 2018 11:10:18 -0800
Subject: [PATCH 0972/1129] bzflag: 2.4.16 -> 2.4.18

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/bzflag/versions
---
 pkgs/games/bzflag/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/games/bzflag/default.nix b/pkgs/games/bzflag/default.nix
index c8618c13347d..c114443e1e72 100644
--- a/pkgs/games/bzflag/default.nix
+++ b/pkgs/games/bzflag/default.nix
@@ -4,11 +4,11 @@
 stdenv.mkDerivation rec {
   name = "${pname}-${version}";
   pname = "bzflag";
-  version = "2.4.16";
+  version = "2.4.18";
 
   src = fetchurl {
     url = "https://download.bzflag.org/${pname}/source/${version}/${name}.tar.bz2";
-    sha256 = "00y2ifjgl4yz1pb2fgkg00vrfb6yk5cfxwjbx3fw2alnsaw6cqgg";
+    sha256 = "1gmz31wmn3f8zq1bfilkgbf4qmi4fa0c93cs76mhg8h978pm23cx";
   };
 
   nativeBuildInputs = [ pkgconfig ];

From e8776d9a5f1bdc153080c5bcac6f7ce53f3477e0 Mon Sep 17 00:00:00 2001
From: Renaud <c0bw3b@users.noreply.github.com>
Date: Sat, 10 Nov 2018 20:11:54 +0100
Subject: [PATCH 0973/1129] smem: 1.4 -> 1.5

Now compatible with Python3
---
 pkgs/os-specific/linux/smem/default.nix | 21 ++++++++-------------
 1 file changed, 8 insertions(+), 13 deletions(-)

diff --git a/pkgs/os-specific/linux/smem/default.nix b/pkgs/os-specific/linux/smem/default.nix
index ede8d425f12d..de12b3719af3 100644
--- a/pkgs/os-specific/linux/smem/default.nix
+++ b/pkgs/os-specific/linux/smem/default.nix
@@ -1,31 +1,26 @@
 { lib, stdenv, fetchurl, python }:
 
 stdenv.mkDerivation rec {
-  name = "smem-1.4";
+  name = "smem-${version}";
+  version = "1.5";
 
   src = fetchurl {
-    url = "https://www.selenic.com/smem/download/${name}.tar.gz";
-    sha256 = "1v31vy23s7szl6vdrllq9zbg58bp36jf5xy3fikjfg6gyiwgia9f";
+    url = "https://selenic.com/repo/smem/archive/${version}.tar.bz2";
+    sha256 = "19ibv1byxf2b68186ysrgrhy5shkc5mc69abark1h18yigp3j34m";
   };
 
   buildInputs = [ python ];
 
-  buildPhase =
-    ''
-      gcc -O2 smemcap.c -o smemcap
-    '';
+  makeFlags = [ "smemcap" ];
 
   installPhase =
     ''
-      mkdir -p $out/bin
-      cp smem smemcap $out/bin/
-
-      mkdir -p $out/share/man/man8
-      cp smem.8 $out/share/man/man8/
+      install -Dm555 -t $out/bin/ smem smemcap
+      install -Dm444 -t $out/share/man/man8/ smem.8
     '';
 
   meta = {
-    homepage = http://www.selenic.com/smem/;
+    homepage = https://www.selenic.com/smem/;
     description = "A memory usage reporting tool that takes shared memory into account";
     platforms = lib.platforms.linux;
     maintainers = [ lib.maintainers.eelco ];

From c43abffb9c1b8f38fc17d09072e1c83fa92c34fb Mon Sep 17 00:00:00 2001
From: David McFarland <corngood@gmail.com>
Date: Sat, 10 Nov 2018 15:11:15 -0400
Subject: [PATCH 0974/1129] androidsdk: fix monitor interpreter path

---
 pkgs/development/mobile/androidenv/androidsdk.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/mobile/androidenv/androidsdk.nix b/pkgs/development/mobile/androidenv/androidsdk.nix
index a463adaf731f..3c2e6c530d22 100644
--- a/pkgs/development/mobile/androidenv/androidsdk.nix
+++ b/pkgs/development/mobile/androidenv/androidsdk.nix
@@ -93,7 +93,7 @@ stdenv.mkDerivation rec {
         # The monitor requires some more patching
 
         cd lib/monitor-x86
-        patchelf --set-interpreter ${stdenv.cc.libc.out}/lib/ld-linux.so.2 monitor
+        patchelf --set-interpreter ${stdenv_32bit.cc.libc.out}/lib/ld-linux.so.2 monitor
         patchelf --set-rpath ${makeLibraryPath [ libX11 libXext libXrender freetype fontconfig ]} libcairo-swt.so
 
         wrapProgram `pwd`/monitor \

From 230f71477bdd051e203d63c123b2a5cb7fed65a4 Mon Sep 17 00:00:00 2001
From: Tom Hall <tahall256@protonmail.ch>
Date: Sat, 10 Nov 2018 18:40:12 +0000
Subject: [PATCH 0975/1129] qtwebglplugin: init at 5.11

Note: As with all Qt plugins, must set QT_QPA_PLATFORM_PLUGIN_PATH=~/.nix-profile/lib/qt-5.11/plugins for it to be found.
---
 pkgs/development/libraries/qt-5/5.11/default.nix          | 1 +
 pkgs/development/libraries/qt-5/modules/qtwebglplugin.nix | 6 ++++++
 2 files changed, 7 insertions(+)
 create mode 100644 pkgs/development/libraries/qt-5/modules/qtwebglplugin.nix

diff --git a/pkgs/development/libraries/qt-5/5.11/default.nix b/pkgs/development/libraries/qt-5/5.11/default.nix
index bc4b0a8f33be..57300878e49d 100644
--- a/pkgs/development/libraries/qt-5/5.11/default.nix
+++ b/pkgs/development/libraries/qt-5/5.11/default.nix
@@ -113,6 +113,7 @@ let
       qtwayland = callPackage ../modules/qtwayland.nix {};
       qtwebchannel = callPackage ../modules/qtwebchannel.nix {};
       qtwebengine = callPackage ../modules/qtwebengine.nix {};
+      qtwebglplugin = callPackage ../modules/qtwebglplugin.nix {};
       qtwebkit = callPackage ../modules/qtwebkit.nix {};
       qtwebsockets = callPackage ../modules/qtwebsockets.nix {};
       qtx11extras = callPackage ../modules/qtx11extras.nix {};
diff --git a/pkgs/development/libraries/qt-5/modules/qtwebglplugin.nix b/pkgs/development/libraries/qt-5/modules/qtwebglplugin.nix
new file mode 100644
index 000000000000..444d0c1beae8
--- /dev/null
+++ b/pkgs/development/libraries/qt-5/modules/qtwebglplugin.nix
@@ -0,0 +1,6 @@
+{ qtModule, qtbase, qtwebsockets }:
+
+qtModule {
+  name = "qtwebglplugin";
+  qtInputs = [ qtbase qtwebsockets ];
+}

From 0e134bfa34255b80f2d4bba34dacc6e64cf746e8 Mon Sep 17 00:00:00 2001
From: hlolli <hlolli@gmail.com>
Date: Sat, 10 Nov 2018 21:52:48 +0100
Subject: [PATCH 0976/1129] Lumo init at 1.9.0

---
 .../clojurescript/lumo/default.nix            |  257 +
 .../interpreters/clojurescript/lumo/deps.edn  |   12 +
 .../interpreters/clojurescript/lumo/deps.nix  |  392 ++
 .../clojurescript/lumo/package.json           |   42 +
 .../node-packages/node-packages-v8.json       |    1 +
 .../node-packages/node-packages-v8.nix        | 4165 ++++++++++++++---
 pkgs/top-level/all-packages.nix               |    4 +
 7 files changed, 4329 insertions(+), 544 deletions(-)
 create mode 100644 pkgs/development/interpreters/clojurescript/lumo/default.nix
 create mode 100644 pkgs/development/interpreters/clojurescript/lumo/deps.edn
 create mode 100644 pkgs/development/interpreters/clojurescript/lumo/deps.nix
 create mode 100644 pkgs/development/interpreters/clojurescript/lumo/package.json

diff --git a/pkgs/development/interpreters/clojurescript/lumo/default.nix b/pkgs/development/interpreters/clojurescript/lumo/default.nix
new file mode 100644
index 000000000000..40276cf3c42b
--- /dev/null
+++ b/pkgs/development/interpreters/clojurescript/lumo/default.nix
@@ -0,0 +1,257 @@
+{ stdenv, lib, fetchurl, clojure,
+  nodejs, jre, unzip,  nodePackages,
+  python, openssl }:
+
+let # packageJSON=./package.json;
+    version = "1.9.0";
+    nodeVersion = "10.9.0";
+    nodeSources = fetchurl {
+      url="https://nodejs.org/dist/v${nodeVersion}/node-v${nodeVersion}.tar.gz";
+      sha256="0wgawq3wzw07pir73bxz13dggcc1fj0538y7y69n3cc0a2kiplqy";
+    };
+    lumo-internal-classpath = "LUMO__INTERNAL__CLASSPATH";
+
+    # as found in cljs/snapshot/lumo/repl.cljs
+    requireDeps = '' \
+      cljs.analyzer \
+      cljs.compiler \
+      cljs.env \
+      cljs.js \
+      cljs.reader \
+      cljs.repl \
+      cljs.source-map \
+      cljs.source-map.base64 \
+      cljs.source-map.base64-vlq \
+      cljs.spec.alpha \
+      cljs.spec.gen.alpha \
+      cljs.tagged-literals \
+      cljs.tools.reader \
+      cljs.tools.reader.reader-types \
+      cljs.tools.reader.impl.commons \
+      cljs.tools.reader.impl.utils \
+      clojure.core.rrb-vector \
+      clojure.core.rrb-vector.interop \
+      clojure.core.rrb-vector.nodes \
+      clojure.core.rrb-vector.protocols \
+      clojure.core.rrb-vector.rrbt \
+      clojure.core.rrb-vector.transients \
+      clojure.core.rrb-vector.trees \
+      clojure.string \
+      clojure.set \
+      clojure.walk \
+      cognitect.transit \
+      fipp.visit \
+      fipp.engine \
+      fipp.deque \
+      lazy-map.core \
+      lumo.pprint.data \
+      lumo.repl \
+      lumo.repl-resources \
+      lumo.js-deps \
+      lumo.common '';
+
+    compileClojurescript = (simple: ''
+      (require '[cljs.build.api :as cljs])
+      (cljs/build \"src/cljs/snapshot\"
+        {:optimizations      ${if simple then ":simple" else ":none"}
+         :main               'lumo.core
+         :cache-analysis     true
+         :source-map         false
+         :dump-core          false
+         :static-fns         true
+         :optimize-constants false
+         :npm-deps           false
+         :verbose            true
+         :closure-defines    {'cljs.core/*target*       \"nodejs\"
+                              'lumo.core/*lumo-version* \"${version}\"}
+         :compiler-stats     true
+         :process-shim       false
+         :fn-invoke-direct   true
+         :parallel-build     false
+         :browser-repl       false
+         :target             :nodejs
+         :hashbang           false
+         ;; :libs               [ \"src/cljs/bundled\" \"src/js\" ]
+         :output-dir         ${if simple
+                                    then ''\"cljstmp\"''
+                                  else ''\"target\"''}
+         :output-to          ${if simple
+                                    then ''\"cljstmp/main.js\"''
+                                  else ''\"target/deleteme.js\"'' }})
+    '');
+
+
+    cacheToJsons = ''
+      (import [java.io ByteArrayOutputStream FileInputStream])
+      (require '[cognitect.transit :as transit]
+               '[clojure.edn :as edn]
+               '[clojure.string :as str])
+
+      (defn write-transit-json [cache]
+        (let [out (ByteArrayOutputStream. 1000000)
+              writer (transit/writer out :json)]
+          (transit/write writer cache)
+          (.toString out)))
+
+      (defn process-caches []
+        (let [cache-aot-path      \"target/cljs/core.cljs.cache.aot.edn\"
+              cache-aot-edn       (edn/read-string (slurp cache-aot-path))
+              cache-macros-path   \"target/cljs/core\$macros.cljc.cache.json\"
+              cache-macros-stream (FileInputStream. cache-macros-path)
+              cache-macros-edn    (transit/read (transit/reader cache-macros-stream :json))
+              caches              [[cache-aot-path cache-aot-edn]
+                                   [cache-macros-path cache-macros-edn]]]
+          (doseq [[path cache-edn] caches]
+            (doseq [key (keys cache-edn)]
+              (let [out-path (str/replace path #\"(\.json|\.edn)\$\"
+                               (str \".\" (munge key) \".json\"))
+                    tr-json  (write-transit-json (key cache-edn))]
+                (spit out-path tr-json))))))
+
+      (process-caches)
+    '';
+
+    trimMainJsEnd = ''
+      (let [string (slurp \"target/main.js\")]
+        (spit \"target/main.js\"
+          (subs string  0 (.indexOf string \"cljs.nodejs={};\"))))
+    '';
+
+
+    cljdeps   = import ./deps.nix;
+    cljpaths  = cljdeps.makePaths {};
+    classp    = cljdeps.makeClasspaths {
+                  extraClasspaths=["src/js" "src/cljs/bundled" "src/cljs/snapshot"];
+                };
+    
+
+    getJarPath = jarName: (lib.findFirst (p: p.name == jarName) null cljdeps.packages).path.jar;
+
+in stdenv.mkDerivation rec {
+  inherit version;
+  name = "lumo-${version}";
+
+  src = fetchurl {
+    url    = "https://github.com/anmonteiro/lumo/archive/${version}.tar.gz";
+    sha256 = "1mr3zjslznhv7y3mzvg1pmmvzn10d6di26izz4x8p4nfnshacwgw";
+  };
+
+
+  buildInputs = [ nodejs clojure jre unzip python openssl
+                  nodePackages."lumo-build-deps-../interpreters/clojurescript/lumo" ];
+
+  buildPhase = ''
+    # Copy over lumo-build-deps environment
+    rm yarn.lock
+    cp -rf ${nodePackages."lumo-build-deps-../interpreters/clojurescript/lumo"}/lib/node_modules/lumo-build-deps/* ./
+
+    # configure clojure-cli
+    mkdir ./.cpcache
+    export CLJ_CONFIG=`pwd`
+    export CLJ_CACHE=`pwd`/.cpcache 
+
+    # require more namespaces for cljs-bundle
+    sed -i "s!ns lumo.core! \
+              ns lumo.core  \
+               (:require ${requireDeps}) \
+               (:require-macros [clojure.template :as temp] \
+                                [cljs.test :as test])!g" \
+              ./src/cljs/snapshot/lumo/core.cljs          
+
+    # Step 1: compile clojurescript with :none and :simple
+    ${clojure}/bin/clojure -Scp ${classp} -e "${compileClojurescript true}"
+    ${clojure}/bin/clojure -Scp ${classp} -e "${compileClojurescript false}"
+    cp -f cljstmp/main.js target/main.js
+    ${clojure}/bin/clojure -Scp ${classp} -e "${trimMainJsEnd}"
+
+    # Step 2: sift files
+    unzip -o ${getJarPath "org.clojure/clojurescript"} -d ./target
+    unzip -j ${getJarPath "org.clojure/clojure"} "clojure/template.clj" -d ./target/clojure
+    unzip -o ${getJarPath "org.clojure/google-closure-library"} -d ./target
+    unzip -o ${getJarPath "org.clojure/google-closure-library-third-party"} -d ./target
+    unzip -o ${getJarPath "org.clojure/tools.reader"} -d ./target
+    unzip -o ${getJarPath "org.clojure/test.check"} -d ./target
+    cp -rf ./src/cljs/bundled/lumo/* ./target/lumo/
+    cp -rf ./src/cljs/snapshot/lumo/repl.clj ./target/lumo/
+    # cleanup
+    mv ./target/main.js ./target/main
+    rm ./target/*\.js
+    mv ./target/main ./target/main.js
+    rm ./target/AUTHORS
+    rm ./target/LICENSE
+    rm ./target/*.edn
+    rm ./target/*.md
+    rm -rf ./target/css
+    rm -rf ./target/META-INF
+    rm -rf ./target/com
+    rm -rf ./target/cljs/build
+    rm -rf ./target/cljs/repl
+    rm  ./target/cljs/core\.cljs\.cache.aot\.json
+    rm  ./target/cljs/source_map\.clj
+    rm  ./target/cljs/repl\.cljc
+    rm  ./target/cljs/externs\.clj
+    rm  ./target/cljs/closure\.clj
+    rm  ./target/cljs/util\.cljc
+    rm  ./target/cljs/js_deps\.cljc
+    rm  ./target/cljs/analyzer/utils\.clj
+    rm  ./target/cljs/core/macros\.clj
+    rm  ./target/cljs/compiler/api.clj
+    rm  ./target/goog/test_module*
+    rm  ./target/goog/transpile\.js
+    rm  ./target/goog/base_*
+    find ./target -type f -name '*.class' -delete
+    find ./target -type d -empty -delete
+
+    # Step 3: generate munged cache jsons
+    ${clojure}/bin/clojure -Scp ${classp} -e "${cacheToJsons}"
+    rm  ./target/cljs/core\$macros\.cljc\.cache\.json
+    
+
+    # Step 4: Bunde javascript
+    NODE_ENV=production node scripts/bundle.js
+    node scripts/bundleForeign.js
+
+    # Step 5: Backup resources
+    cp -R target resources_bak
+
+    # Step 6: Package executeable 1st time
+    # fetch node sources and copy to palce that nexe will find
+    mkdir -p tmp/${nodeVersion}
+    cp ${nodeSources} tmp/${nodeVersion}/node-${nodeVersion}.tar.gz
+    tar -C ./tmp/${nodeVersion} -xf ${nodeSources}
+    mv ./tmp/${nodeVersion}/node-v${nodeVersion}/* ./tmp/${nodeVersion}/
+    rm -rf ${lumo-internal-classpath}
+    mv target ${lumo-internal-classpath}
+    node scripts/package.js ${nodeVersion}
+    rm -rf ${lumo-internal-classpath}
+
+    # Step 7: AOT Macros
+    sh scripts/aot-bundle-macros.sh
+
+    # Step 8: Package executeable 2nd time
+    rm -rf ${lumo-internal-classpath}
+    mv target ${lumo-internal-classpath}
+    node scripts/package.js ${nodeVersion}
+  '';
+
+  dontStrip = true;
+
+  installPhase = ''
+    mkdir -p $out/bin
+    cp build/lumo $out/bin
+  '';
+
+  meta = {
+    description = "Fast, cross-platform, standalone ClojureScript environment";
+    longDescription = ''
+      Lumo is a fast, standalone ClojureScript REPL that runs on Node.js and V8.
+      Thanks to V8's custom startup snapshots, Lumo starts up instantaneously,
+      making it the fastest Clojure REPL in existence.
+    '';
+    homepage = https://github.com/anmonteiro/lumo;
+    license = stdenv.lib.licenses.epl10;
+    maintainers = [ stdenv.lib.maintainers.hlolli ];
+    platforms = stdenv.lib.platforms.linux;
+  };
+}
+
diff --git a/pkgs/development/interpreters/clojurescript/lumo/deps.edn b/pkgs/development/interpreters/clojurescript/lumo/deps.edn
new file mode 100644
index 000000000000..e1563599a8cc
--- /dev/null
+++ b/pkgs/development/interpreters/clojurescript/lumo/deps.edn
@@ -0,0 +1,12 @@
+{:deps
+ {org.clojure/clojure       {:mvn/version "1.10.0-beta5"}
+  org.clojure/clojurescript {:mvn/version "1.10.439"}
+  org.clojure/test.check    {:mvn/version "0.10.0-alpha3"}
+  org.clojure/tools.reader   {:mvn/version "1.3.2"
+                              :exclusions  [org.clojure/clojure org.clojure/clojurescript]}
+  com.cognitect/transit-cljs {:mvn/version "0.8.256"
+                              :exclusions  [org.clojure/clojure org.clojure/clojurescript]}
+  malabarba/lazy-map         {:mvn/version "1.3"
+                              :exclusions  [org.clojure/clojure org.clojure/clojurescript]}
+  fipp                       {:mvn/version "0.6.14"
+                              :exclusions  [org.clojure/clojure org.clojure/clojurescript]}}}
diff --git a/pkgs/development/interpreters/clojurescript/lumo/deps.nix b/pkgs/development/interpreters/clojurescript/lumo/deps.nix
new file mode 100644
index 000000000000..b73c41b8f3d7
--- /dev/null
+++ b/pkgs/development/interpreters/clojurescript/lumo/deps.nix
@@ -0,0 +1,392 @@
+# generated by clj2nix
+let repos = [
+        "https://repo.clojars.org/"
+        "https://repo1.maven.org/"
+        "http://central.maven.org/maven2/"
+        "http://oss.sonatype.org/content/repositories/releases/"
+        "http://oss.sonatype.org/content/repositories/public/"
+        "http://repo.typesafe.com/typesafe/releases/"
+      ];
+  pkgs = import <nixpkgs> {};
+  in rec {
+      makePaths = {extraClasspaths ? []}: (builtins.map (dep: if builtins.hasAttr "jar" dep.path then dep.path.jar else dep.path) packages) ++ extraClasspaths;
+      makeClasspaths = {extraClasspaths ? []}: builtins.concatStringsSep ":" (makePaths {inherit extraClasspaths;});
+
+      packages = [
+  {
+    name = "com.cognitect/transit-java";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "transit-java";
+      groupId = "com.cognitect";
+      sha512 = "80365a4f244e052b6c4fdfd2fd3b91288835599cb4dd88e0e0dae19883dcda39afee83966810ed81beff342111c3a45a66f5601c443f3ad49904908c43631708";
+      version = "0.8.332";
+    };
+  }
+
+  {
+    name = "org.clojure/data.json";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "data.json";
+      groupId = "org.clojure";
+      sha512 = "ce526bef01bedd31b772954d921a61832ae60af06121f29080853f7932326438b33d183240a9cffbe57e00dc3744700220753948da26b8973ee21c30e84227a6";
+      version = "0.2.6";
+    };
+  }
+
+  {
+    name = "org.clojure/clojure";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "clojure";
+      groupId = "org.clojure";
+      sha512 = "f7a6b207b1bcbb6523d32ecfdd3c8c25d4d0b0a59c78baf06cdc69ba3c21c5e96b5dac8e9efcb331efd94e10bccbb9b54fca62a4312309db65a1f9d89d9da3f4";
+      version = "1.10.0-beta5";
+    };
+  }
+
+  {
+    name = "commons-codec/commons-codec";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "commons-codec";
+      groupId = "commons-codec";
+      sha512 = "8edecc0faf38e8620460909d8191837f34e2bb2ce853677c486c5e79bb79e88d043c3aed69c11f1365c4884827052ee4e1c18ca56e38d1a5bc0ce15c57daeee3";
+      version = "1.10";
+    };
+  }
+
+  {
+    name = "com.google.errorprone/error_prone_annotations";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "error_prone_annotations";
+      groupId = "com.google.errorprone";
+      sha512 = "bd2135cc9eb2c652658a2814ec9c565fa3e071d4cff590cbe17b853885c78c9f84c1b7b24ba736f4f30ed8cec60a6af983827fcbed61ff142f27ac808e97fc6b";
+      version = "2.1.3";
+    };
+  }
+
+  {
+    name = "org.clojure/core.specs.alpha";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "core.specs.alpha";
+      groupId = "org.clojure";
+      sha512 = "348c0ea0911bc0dcb08655e61b97ba040649b4b46c32a62aa84d0c29c245a8af5c16d44a4fa5455d6ab076f4bb5bbbe1ad3064a7befe583f13aeb9e32a169bf4";
+      version = "0.2.44";
+    };
+  }
+
+  {
+    name = "org.clojure/spec.alpha";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "spec.alpha";
+      groupId = "org.clojure";
+      sha512 = "18c97fb2b74c0bc2ff4f6dc722a3edec539f882ee85d0addf22bbf7e6fe02605d63f40c2b8a2905868ccd6f96cfc36a65f5fb70ddac31c6ec93da228a456edbd";
+      version = "0.2.176";
+    };
+  }
+
+  {
+    name = "org.codehaus.mojo/animal-sniffer-annotations";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "animal-sniffer-annotations";
+      groupId = "org.codehaus.mojo";
+      sha512 = "9e5e3ea9e06e0ac9463869fd0e08ed38f7042784995a7b50c9bfd7f692a53f0e1430b9e1367dc772d0d4eafe5fd2beabbcc60da5008bd792f9e7ec8436c0f136";
+      version = "1.14";
+    };
+  }
+
+  {
+    name = "com.googlecode.json-simple/json-simple";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "json-simple";
+      groupId = "com.googlecode.json-simple";
+      sha512 = "f8798bfbcc8ab8001baf90ce47ec2264234dc1da2d4aa97fdcdc0990472a6b5a5a32f828e776140777d598a99d8a0c0f51c6d0767ae1a829690ab9200ae35742";
+      version = "1.1.1";
+    };
+  }
+
+  {
+    name = "com.cognitect/transit-cljs";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "transit-cljs";
+      groupId = "com.cognitect";
+      sha512 = "318b98ddd63629f37b334bb90e625bc31ab6abcf0b1fa80d8e097551658f2d9219b5ee35869a31f2976d7d385da83bea0c07b0d097babcae241ecbd0fe8a7ecd";
+      version = "0.8.256";
+    };
+  }
+
+  {
+    name = "org.clojure/google-closure-library";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "google-closure-library";
+      groupId = "org.clojure";
+      sha512 = "75631182ef12f21723fe3eba1003d8cf9b8348a51512961e4e1b87bc24d8f3abb14a70c856f08cdaa5588a2d7c2b1b0c03aeaa3c4c5f2ed745a85f59ceeab83a";
+      version = "0.0-20170809-b9c14c6b";
+    };
+  }
+
+  {
+    name = "fipp";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "fipp";
+      groupId = "fipp";
+      sha512 = "155b5bb7045ac7c3a75c638e65464ca1fc90e5b4692328fc2da73b26792178fdbce5ab01ba0397e1986b6162b06b8904712d2c366f32ea43ea5fa2b454a526a5";
+      version = "0.6.14";
+    };
+  }
+
+  {
+    name = "org.clojure/clojurescript";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "clojurescript";
+      groupId = "org.clojure";
+      sha512 = "4aec5abdd48aaf95f7a729e11d225a99d02caa3a4ddff3e9e4f8db80dea83ab70a4440691cb372562c8c16e73c2850b22806a2851df3849c852fddd49b57fc58";
+      version = "1.10.439";
+    };
+  }
+
+  {
+    name = "com.google.jsinterop/jsinterop-annotations";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "jsinterop-annotations";
+      groupId = "com.google.jsinterop";
+      sha512 = "b6fd98a9167d031f6bff571567d4658fda62c132dc74d47ca85e02c9bb3ce8812b1012c67f4c81501ab0cbd9ccd9cda5dcf32d306e04368ace7a173cecae975d";
+      version = "1.0.0";
+    };
+  }
+
+  {
+    name = "com.fasterxml.jackson.core/jackson-core";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "jackson-core";
+      groupId = "com.fasterxml.jackson.core";
+      sha512 = "a1bd6c264b9ab07aad3d0f26b65757e35ff47904ab895bb7f997e3e1fd063129c177ad6f69876907b04ff8a43c6b1770a26f53a811633a29e66a5dce57194f64";
+      version = "2.8.7";
+    };
+  }
+
+  {
+    name = "malabarba/lazy-map";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "lazy-map";
+      groupId = "malabarba";
+      sha512 = "ce56d6f03ac344579e15f062cdd4c477c0323da716d4d4106c4edb746959699e0b294b25aacf8ecf1579a6bdd5556a60f4bcb1648d22832984c069a0431c840f";
+      version = "1.3";
+    };
+  }
+
+  {
+    name = "com.cognitect/transit-js";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "transit-js";
+      groupId = "com.cognitect";
+      sha512 = "6ca0978e633e41b45ff5a76df79099ba7c4900a8ca9f6acd2a903e4ab10a1ec0c83d4127009df9dac1337debaba01f7ff1d5cced1c2159c05ef94845f73f0623";
+      version = "0.8.846";
+    };
+  }
+
+  {
+    name = "org.mozilla/rhino";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "rhino";
+      groupId = "org.mozilla";
+      sha512 = "466e7a76303ea191802b5e7adb3dff64c1d6283a25ce87447296b693b87b166f4cdd191ef7dc130a5739bfa0e4a81b08550f607c84eec167406d9be2225562dc";
+      version = "1.7R5";
+    };
+  }
+
+  {
+    name = "org.clojure/google-closure-library-third-party";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "google-closure-library-third-party";
+      groupId = "org.clojure";
+      sha512 = "57fa84fbbca3eb9e612d2842e4476b74f64d13dd076ffca6c9d9e15c4ca8a2f2c56cc19307bcad0ab5b4f9cb0c3e7900ccc845bd570ebc92e2633885ab621f35";
+      version = "0.0-20170809-b9c14c6b";
+    };
+  }
+
+  {
+    name = "com.google.javascript/closure-compiler-externs";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "closure-compiler-externs";
+      groupId = "com.google.javascript";
+      sha512 = "1a47c8559144095c0b23a8e40acd7185625cea5a4c103eb75fbacd32d5809d087bfb60aaf57066329649c6017ec5f993756024e767a5b8f84926371ba6183a82";
+      version = "v20180805";
+    };
+  }
+
+  {
+    name = "org.javassist/javassist";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "javassist";
+      groupId = "org.javassist";
+      sha512 = "ad65ee383ed83bedecc2073118cb3780b68b18d5fb79a1b2b665ff8529df02446ad11e68f9faaf4f2e980065f5946761a59ada379312cbb22d002625abed6a4f";
+      version = "3.18.1-GA";
+    };
+  }
+
+  {
+    name = "com.google.guava/guava";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "guava";
+      groupId = "com.google.guava";
+      sha512 = "429ceeec0350ba98e2b089b8b70ded2ec570c3a684894a7545d10592c1c7be42dacd1fad8b2cb9123aa3612575ce1b56e1bb54923443fc293f8e9adeac2762ee";
+      version = "25.1-jre";
+    };
+  }
+
+  {
+    name = "org.msgpack/msgpack";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "msgpack";
+      groupId = "org.msgpack";
+      sha512 = "a2741bed01f9c37ba3dbe6a7ab9ce936d36d4da97c35e215250ac89ac0851fc5948d83975ea6257d5dce1d43b6b5147254ecfb4b33f9bbdc489500b3ff060449";
+      version = "0.6.12";
+    };
+  }
+
+  {
+    name = "com.google.j2objc/j2objc-annotations";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "j2objc-annotations";
+      groupId = "com.google.j2objc";
+      sha512 = "a4a0b58ffc2d9f9b516f571bcd0ac14e4d3eec15aacd6320a4a1a12045acce8c6081e8ce922c4e882221cedb2cc266399ab468487ae9a08124d65edc07ae30f0";
+      version = "1.1";
+    };
+  }
+
+  {
+    name = "com.cognitect/transit-clj";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "transit-clj";
+      groupId = "com.cognitect";
+      sha512 = "ad838d9e5688c8cebe54972ad0c9a6db428ec1cece8c8b078e8e8d4b0c7870b328239d2bc9dd8fcbedcba56ca0de9afb5a0a843ff5f630dc039118de7eb45eba";
+      version = "0.8.309";
+    };
+  }
+
+  {
+    name = "args4j/args4j";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "args4j";
+      groupId = "args4j";
+      sha512 = "5f0651234c8f8b130fddb39fa832c6da47d3e21bc3434307554314c47e672c28d005c64e9effe85d552190cfc27966b1f005740ffd40b4e1bec2cb257d7feedb";
+      version = "2.0.26";
+    };
+  }
+
+  {
+    name = "org.clojure/core.rrb-vector";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "core.rrb-vector";
+      groupId = "org.clojure";
+      sha512 = "5f737bf3ca3acf567b2b5c14b5761c8c38e94e1f6168f8cba9f46d2ae41334ae3d68d2c00663827a6214094d96b9767f6803f66ab44b0012c6f2e3c2997b1796";
+      version = "0.0.13";
+    };
+  }
+
+  {
+    name = "org.checkerframework/checker-qual";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "checker-qual";
+      groupId = "org.checkerframework";
+      sha512 = "3c38b0b9e0bde464268cff5fdb1894a048240b039093ee3abe5b32976a22737d26b355f8793f630a7f0b319fdb019a6fcd9ee1d5219676f0f10c0b0f496b61b7";
+      version = "2.0.0";
+    };
+  }
+
+  {
+    name = "org.clojure/tools.reader";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "tools.reader";
+      groupId = "org.clojure";
+      sha512 = "290a2d98b2eec08a8affc2952006f43c0459c7e5467dc454f5fb5670ea7934fa974e6be19f7e7c91dadcfed62082d0fbcc7788455b7446a2c9c5af02f7fc52b6";
+      version = "1.3.2";
+    };
+  }
+
+  {
+    name = "com.google.javascript/closure-compiler-unshaded";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "closure-compiler-unshaded";
+      groupId = "com.google.javascript";
+      sha512 = "4fa7029aabd9ff84255d56004707486726db9c770f43cb10dc44fb53a3254d588a0f47f937f55401d7f319267ec2362c87f5ea709bcfa06f12a66fe22cb8c53d";
+      version = "v20180805";
+    };
+  }
+
+  {
+    name = "org.clojure/test.check";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "test.check";
+      groupId = "org.clojure";
+      sha512 = "bf57571a9d31d50cf15b38134f4d7c34d03eb458bc62b30c7a1dbf233e300c67f1fda6673dbd1584a0497cf8875f972e6697e7f13d0c3e70e4254697b1b75cc6";
+      version = "0.10.0-alpha3";
+    };
+  }
+
+  {
+    name = "com.google.protobuf/protobuf-java";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "protobuf-java";
+      groupId = "com.google.protobuf";
+      sha512 = "230fc4360b8b2ee10eb73d756c58478b6c779433aa4ca91938404bbfd0ada516d3215664dbe953c96649e33bbef293958e4ad4616671f0c246883196ece92998";
+      version = "3.0.2";
+    };
+  }
+
+  {
+    name = "com.google.code.findbugs/jsr305";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "jsr305";
+      groupId = "com.google.code.findbugs";
+      sha512 = "bb09db62919a50fa5b55906013be6ca4fc7acb2e87455fac5eaf9ede2e41ce8bbafc0e5a385a561264ea4cd71bbbd3ef5a45e02d63277a201d06a0ae1636f804";
+      version = "3.0.2";
+    };
+  }
+
+  {
+    name = "com.google.code.gson/gson";
+    path = pkgs.fetchMavenArtifact {
+      inherit repos;
+      artifactId = "gson";
+      groupId = "com.google.code.gson";
+      sha512 = "c3cdaf66a99e6336abc80ff23374f6b62ac95ab2ae874c9075805e91d849b18e3f620cc202b4978fc92b73d98de96089c8714b1dd096b2ae1958cfa085715f7a";
+      version = "2.7";
+    };
+  }
+
+  ];
+  }
+  
\ No newline at end of file
diff --git a/pkgs/development/interpreters/clojurescript/lumo/package.json b/pkgs/development/interpreters/clojurescript/lumo/package.json
new file mode 100644
index 000000000000..358595ef1eb8
--- /dev/null
+++ b/pkgs/development/interpreters/clojurescript/lumo/package.json
@@ -0,0 +1,42 @@
+{
+  "name": "lumo-build-deps",
+  "version": "1.9.0",
+  "dependencies": {
+    "@babel/core": "^7.1.5",
+    "@babel/plugin-external-helpers": "7.0.0",
+    "@babel/plugin-proposal-class-properties": "^7.1.0",
+    "@babel/plugin-proposal-object-rest-spread": "^7.0.0",
+    "@babel/plugin-transform-runtime": "^7.1.0",
+    "@babel/preset-env": "^7.1.5",
+    "@babel/preset-stage-2": "7.0.0",
+    "@babel/runtime": "^7.1.5",
+    "async-retry": "^1.2.3",
+    "babel-core": "^7.0.0-bridge.0",
+    "babel-eslint": "10.0.1",
+    "babel-jest": "^23.6.0",
+    "babel-loader": "^8.0.4",
+    "babel-plugin-transform-flow-strip-types": "6.22.0",
+    "chalk": "^2.4.1",
+    "cross-env": "5.2.0",
+    "death": "^1.1.0",
+    "flow-bin": "0.85.0",
+    "google-closure-compiler-js": "20170910.0.1",
+    "jszip": "github:anmonteiro/jszip#patch-1",
+    "nexe": "3.0.0-beta.7",
+    "node-fetch": "^2.2.1",
+    "paredit.js": "0.3.4",
+    "posix-getopt": "github:anmonteiro/node-getopt#master",
+    "prettier": "1.15.1",
+    "progress": "^2.0.0",
+    "read-pkg": "^4.0.1",
+    "rollup": "0.67.0",
+    "rollup-plugin-babel": "4.0.3",
+    "rollup-plugin-babel-minify": "6.1.1",
+    "rollup-plugin-commonjs": "9.2.0",
+    "rollup-plugin-node-resolve": "3.4.0",
+    "rollup-plugin-replace": "2.1.0",
+    "webpack": "^4.25.1",
+    "webpack-cli": "^3.1.2",
+    "which-promise": "^1.0.0"
+  }
+}
diff --git a/pkgs/development/node-packages/node-packages-v8.json b/pkgs/development/node-packages/node-packages-v8.json
index 5e89c8e3e35b..3a259b20222d 100644
--- a/pkgs/development/node-packages/node-packages-v8.json
+++ b/pkgs/development/node-packages/node-packages-v8.json
@@ -68,6 +68,7 @@
 , "less-plugin-clean-css"
 , "live-server"
 , "livedown"
+, { "lumo-build-deps": "../interpreters/clojurescript/lumo" }
 , "madoko"
 , "mathjax"
 , "meat"
diff --git a/pkgs/development/node-packages/node-packages-v8.nix b/pkgs/development/node-packages/node-packages-v8.nix
index 443c011c95d8..34060c1d8c4d 100644
--- a/pkgs/development/node-packages/node-packages-v8.nix
+++ b/pkgs/development/node-packages/node-packages-v8.nix
@@ -40,6 +40,15 @@ let
         sha512 = "OfC2uemaknXr87bdLUkWog7nYuliM9Ij5HUcajsVcMCpQrcLmtxRbVFTIqmcSkSeYRBFBRxs2FiUqFJDLdiebA==";
       };
     };
+    "@babel/core-7.1.5" = {
+      name = "_at_babel_slash_core";
+      packageName = "@babel/core";
+      version = "7.1.5";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/core/-/core-7.1.5.tgz";
+        sha512 = "vOyH020C56tQvte++i+rX2yokZcRfbv/kKcw+/BCRw/cK6dvsr47aCzm8oC1XHwMSEWbqrZKzZRLzLnq6SFMsg==";
+      };
+    };
     "@babel/generator-7.0.0-beta.38" = {
       name = "_at_babel_slash_generator";
       packageName = "@babel/generator";
@@ -49,13 +58,193 @@ let
         sha512 = "aOHQPhsEyaB6p2n+AK981+onHoc+Ork9rcAQVSUJR33wUkGiWRpu6/C685knRyIZVsKeSdG5Q4xMiYeFUhuLzA==";
       };
     };
-    "@babel/generator-7.1.3" = {
+    "@babel/generator-7.1.5" = {
       name = "_at_babel_slash_generator";
       packageName = "@babel/generator";
-      version = "7.1.3";
+      version = "7.1.5";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@babel/generator/-/generator-7.1.3.tgz";
-        sha512 = "ZoCZGcfIJFJuZBqxcY9OjC1KW2lWK64qrX1o4UYL3yshVhwKFYgzpWZ0vvtGMNJdTlvkw0W+HR1VnYN8q3QPFQ==";
+        url = "https://registry.npmjs.org/@babel/generator/-/generator-7.1.5.tgz";
+        sha512 = "IO31r62xfMI+wBJVmgx0JR9ZOHty8HkoYpQAjRWUGG9vykBTlGHdArZ8zoFtpUu2gs17K7qTl/TtPpiSi6t+MA==";
+      };
+    };
+    "@babel/helper-annotate-as-pure-7.0.0" = {
+      name = "_at_babel_slash_helper-annotate-as-pure";
+      packageName = "@babel/helper-annotate-as-pure";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-annotate-as-pure/-/helper-annotate-as-pure-7.0.0.tgz";
+        sha512 = "3UYcJUj9kvSLbLbUIfQTqzcy5VX7GRZ/CCDrnOaZorFFM01aXp1+GJwuFGV4NDDoAS+mOUyHcO6UD/RfqOks3Q==";
+      };
+    };
+    "@babel/helper-builder-binary-assignment-operator-visitor-7.1.0" = {
+      name = "_at_babel_slash_helper-builder-binary-assignment-operator-visitor";
+      packageName = "@babel/helper-builder-binary-assignment-operator-visitor";
+      version = "7.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-builder-binary-assignment-operator-visitor/-/helper-builder-binary-assignment-operator-visitor-7.1.0.tgz";
+        sha512 = "qNSR4jrmJ8M1VMM9tibvyRAHXQs2PmaksQF7c1CGJNipfe3D8p+wgNwgso/P2A2r2mdgBWAXljNWR0QRZAMW8w==";
+      };
+    };
+    "@babel/helper-call-delegate-7.1.0" = {
+      name = "_at_babel_slash_helper-call-delegate";
+      packageName = "@babel/helper-call-delegate";
+      version = "7.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-call-delegate/-/helper-call-delegate-7.1.0.tgz";
+        sha512 = "YEtYZrw3GUK6emQHKthltKNZwszBcHK58Ygcis+gVUrF4/FmTVr5CCqQNSfmvg2y+YDEANyYoaLz/SHsnusCwQ==";
+      };
+    };
+    "@babel/helper-define-map-7.1.0" = {
+      name = "_at_babel_slash_helper-define-map";
+      packageName = "@babel/helper-define-map";
+      version = "7.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-define-map/-/helper-define-map-7.1.0.tgz";
+        sha512 = "yPPcW8dc3gZLN+U1mhYV91QU3n5uTbx7DUdf8NnPbjS0RMwBuHi9Xt2MUgppmNz7CJxTBWsGczTiEp1CSOTPRg==";
+      };
+    };
+    "@babel/helper-explode-assignable-expression-7.1.0" = {
+      name = "_at_babel_slash_helper-explode-assignable-expression";
+      packageName = "@babel/helper-explode-assignable-expression";
+      version = "7.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-explode-assignable-expression/-/helper-explode-assignable-expression-7.1.0.tgz";
+        sha512 = "NRQpfHrJ1msCHtKjbzs9YcMmJZOg6mQMmGRB+hbamEdG5PNpaSm95275VD92DvJKuyl0s2sFiDmMZ+EnnvufqA==";
+      };
+    };
+    "@babel/helper-function-name-7.1.0" = {
+      name = "_at_babel_slash_helper-function-name";
+      packageName = "@babel/helper-function-name";
+      version = "7.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-function-name/-/helper-function-name-7.1.0.tgz";
+        sha512 = "A95XEoCpb3TO+KZzJ4S/5uW5fNe26DjBGqf1o9ucyLyCmi1dXq/B3c8iaWTfBk3VvetUxl16e8tIrd5teOCfGw==";
+      };
+    };
+    "@babel/helper-get-function-arity-7.0.0" = {
+      name = "_at_babel_slash_helper-get-function-arity";
+      packageName = "@babel/helper-get-function-arity";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-get-function-arity/-/helper-get-function-arity-7.0.0.tgz";
+        sha512 = "r2DbJeg4svYvt3HOS74U4eWKsUAMRH01Z1ds1zx8KNTPtpTL5JAsdFv8BNyOpVqdFhHkkRDIg5B4AsxmkjAlmQ==";
+      };
+    };
+    "@babel/helper-hoist-variables-7.0.0" = {
+      name = "_at_babel_slash_helper-hoist-variables";
+      packageName = "@babel/helper-hoist-variables";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-hoist-variables/-/helper-hoist-variables-7.0.0.tgz";
+        sha512 = "Ggv5sldXUeSKsuzLkddtyhyHe2YantsxWKNi7A+7LeD12ExRDWTRk29JCXpaHPAbMaIPZSil7n+lq78WY2VY7w==";
+      };
+    };
+    "@babel/helper-member-expression-to-functions-7.0.0" = {
+      name = "_at_babel_slash_helper-member-expression-to-functions";
+      packageName = "@babel/helper-member-expression-to-functions";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-member-expression-to-functions/-/helper-member-expression-to-functions-7.0.0.tgz";
+        sha512 = "avo+lm/QmZlv27Zsi0xEor2fKcqWG56D5ae9dzklpIaY7cQMK5N8VSpaNVPPagiqmy7LrEjK1IWdGMOqPu5csg==";
+      };
+    };
+    "@babel/helper-module-imports-7.0.0" = {
+      name = "_at_babel_slash_helper-module-imports";
+      packageName = "@babel/helper-module-imports";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-module-imports/-/helper-module-imports-7.0.0.tgz";
+        sha512 = "aP/hlLq01DWNEiDg4Jn23i+CXxW/owM4WpDLFUbpjxe4NS3BhLVZQ5i7E0ZrxuQ/vwekIeciyamgB1UIYxxM6A==";
+      };
+    };
+    "@babel/helper-module-transforms-7.1.0" = {
+      name = "_at_babel_slash_helper-module-transforms";
+      packageName = "@babel/helper-module-transforms";
+      version = "7.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-module-transforms/-/helper-module-transforms-7.1.0.tgz";
+        sha512 = "0JZRd2yhawo79Rcm4w0LwSMILFmFXjugG3yqf+P/UsKsRS1mJCmMwwlHDlMg7Avr9LrvSpp4ZSULO9r8jpCzcw==";
+      };
+    };
+    "@babel/helper-optimise-call-expression-7.0.0" = {
+      name = "_at_babel_slash_helper-optimise-call-expression";
+      packageName = "@babel/helper-optimise-call-expression";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-optimise-call-expression/-/helper-optimise-call-expression-7.0.0.tgz";
+        sha512 = "u8nd9NQePYNQV8iPWu/pLLYBqZBa4ZaY1YWRFMuxrid94wKI1QNt67NEZ7GAe5Kc/0LLScbim05xZFWkAdrj9g==";
+      };
+    };
+    "@babel/helper-plugin-utils-7.0.0" = {
+      name = "_at_babel_slash_helper-plugin-utils";
+      packageName = "@babel/helper-plugin-utils";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-plugin-utils/-/helper-plugin-utils-7.0.0.tgz";
+        sha512 = "CYAOUCARwExnEixLdB6sDm2dIJ/YgEAKDM1MOeMeZu9Ld/bDgVo8aiWrXwcY7OBh+1Ea2uUcVRcxKk0GJvW7QA==";
+      };
+    };
+    "@babel/helper-regex-7.0.0" = {
+      name = "_at_babel_slash_helper-regex";
+      packageName = "@babel/helper-regex";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-regex/-/helper-regex-7.0.0.tgz";
+        sha512 = "TR0/N0NDCcUIUEbqV6dCO+LptmmSQFQ7q70lfcEB4URsjD0E1HzicrwUH+ap6BAQ2jhCX9Q4UqZy4wilujWlkg==";
+      };
+    };
+    "@babel/helper-remap-async-to-generator-7.1.0" = {
+      name = "_at_babel_slash_helper-remap-async-to-generator";
+      packageName = "@babel/helper-remap-async-to-generator";
+      version = "7.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-remap-async-to-generator/-/helper-remap-async-to-generator-7.1.0.tgz";
+        sha512 = "3fOK0L+Fdlg8S5al8u/hWE6vhufGSn0bN09xm2LXMy//REAF8kDCrYoOBKYmA8m5Nom+sV9LyLCwrFynA8/slg==";
+      };
+    };
+    "@babel/helper-replace-supers-7.1.0" = {
+      name = "_at_babel_slash_helper-replace-supers";
+      packageName = "@babel/helper-replace-supers";
+      version = "7.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-replace-supers/-/helper-replace-supers-7.1.0.tgz";
+        sha512 = "BvcDWYZRWVuDeXTYZWxekQNO5D4kO55aArwZOTFXw6rlLQA8ZaDicJR1sO47h+HrnCiDFiww0fSPV0d713KBGQ==";
+      };
+    };
+    "@babel/helper-simple-access-7.1.0" = {
+      name = "_at_babel_slash_helper-simple-access";
+      packageName = "@babel/helper-simple-access";
+      version = "7.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-simple-access/-/helper-simple-access-7.1.0.tgz";
+        sha512 = "Vk+78hNjRbsiu49zAPALxTb+JUQCz1aolpd8osOF16BGnLtseD21nbHgLPGUwrXEurZgiCOUmvs3ExTu4F5x6w==";
+      };
+    };
+    "@babel/helper-split-export-declaration-7.0.0" = {
+      name = "_at_babel_slash_helper-split-export-declaration";
+      packageName = "@babel/helper-split-export-declaration";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-split-export-declaration/-/helper-split-export-declaration-7.0.0.tgz";
+        sha512 = "MXkOJqva62dfC0w85mEf/LucPPS/1+04nmmRMPEBUB++hiiThQ2zPtX/mEWQ3mtzCEjIJvPY8nuwxXtQeQwUag==";
+      };
+    };
+    "@babel/helper-wrap-function-7.1.0" = {
+      name = "_at_babel_slash_helper-wrap-function";
+      packageName = "@babel/helper-wrap-function";
+      version = "7.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helper-wrap-function/-/helper-wrap-function-7.1.0.tgz";
+        sha512 = "R6HU3dete+rwsdAfrOzTlE9Mcpk4RjU3aX3gi9grtmugQY0u79X7eogUvfXA5sI81Mfq1cn6AgxihfN33STjJA==";
+      };
+    };
+    "@babel/helpers-7.1.5" = {
+      name = "_at_babel_slash_helpers";
+      packageName = "@babel/helpers";
+      version = "7.1.5";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/helpers/-/helpers-7.1.5.tgz";
+        sha512 = "2jkcdL02ywNBry1YNFAH/fViq4fXG0vdckHqeJk+75fpQ2OH+Az6076tX/M0835zA45E0Cqa6pV5Kiv9YOqjEg==";
       };
     };
     "@babel/highlight-7.0.0" = {
@@ -67,22 +256,427 @@ let
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       };
     };
-    "@babel/parser-7.1.3" = {
+    "@babel/parser-7.1.5" = {
       name = "_at_babel_slash_parser";
       packageName = "@babel/parser";
-      version = "7.1.3";
+      version = "7.1.5";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@babel/parser/-/parser-7.1.3.tgz";
-        sha512 = "gqmspPZOMW3MIRb9HlrnbZHXI1/KHTOroBwN1NcLL6pWxzqzEKGvRTq0W/PxS45OtQGbaFikSQpkS5zbnsQm2w==";
+        url = "https://registry.npmjs.org/@babel/parser/-/parser-7.1.5.tgz";
+        sha512 = "WXKf5K5HT6X0kKiCOezJZFljsfxKV1FpU8Tf1A7ZpGvyd/Q4hlrJm2EwoH2onaUq3O4tLDp+4gk0hHPsMyxmOg==";
       };
     };
-    "@babel/runtime-corejs2-7.1.2" = {
+    "@babel/plugin-external-helpers-7.0.0" = {
+      name = "_at_babel_slash_plugin-external-helpers";
+      packageName = "@babel/plugin-external-helpers";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-external-helpers/-/plugin-external-helpers-7.0.0.tgz";
+        sha512 = "tZKTMdhZvTy0KCEX5EGQQm1RHr7jUa36q/yax1baEA0yZapVYmu10yW7LTqijITgSq416gPVjrcexiA6y4pJlA==";
+      };
+    };
+    "@babel/plugin-proposal-async-generator-functions-7.1.0" = {
+      name = "_at_babel_slash_plugin-proposal-async-generator-functions";
+      packageName = "@babel/plugin-proposal-async-generator-functions";
+      version = "7.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-proposal-async-generator-functions/-/plugin-proposal-async-generator-functions-7.1.0.tgz";
+        sha512 = "Fq803F3Jcxo20MXUSDdmZZXrPe6BWyGcWBPPNB/M7WaUYESKDeKMOGIxEzQOjGSmW/NWb6UaPZrtTB2ekhB/ew==";
+      };
+    };
+    "@babel/plugin-proposal-class-properties-7.1.0" = {
+      name = "_at_babel_slash_plugin-proposal-class-properties";
+      packageName = "@babel/plugin-proposal-class-properties";
+      version = "7.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-proposal-class-properties/-/plugin-proposal-class-properties-7.1.0.tgz";
+        sha512 = "/PCJWN+CKt5v1xcGn4vnuu13QDoV+P7NcICP44BoonAJoPSGwVkgrXihFIQGiEjjPlUDBIw1cM7wYFLARS2/hw==";
+      };
+    };
+    "@babel/plugin-proposal-json-strings-7.0.0" = {
+      name = "_at_babel_slash_plugin-proposal-json-strings";
+      packageName = "@babel/plugin-proposal-json-strings";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-proposal-json-strings/-/plugin-proposal-json-strings-7.0.0.tgz";
+        sha512 = "kfVdUkIAGJIVmHmtS/40i/fg/AGnw/rsZBCaapY5yjeO5RA9m165Xbw9KMOu2nqXP5dTFjEjHdfNdoVcHv133Q==";
+      };
+    };
+    "@babel/plugin-proposal-object-rest-spread-7.0.0" = {
+      name = "_at_babel_slash_plugin-proposal-object-rest-spread";
+      packageName = "@babel/plugin-proposal-object-rest-spread";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-proposal-object-rest-spread/-/plugin-proposal-object-rest-spread-7.0.0.tgz";
+        sha512 = "14fhfoPcNu7itSen7Py1iGN0gEm87hX/B+8nZPqkdmANyyYWYMY2pjA3r8WXbWVKMzfnSNS0xY8GVS0IjXi/iw==";
+      };
+    };
+    "@babel/plugin-proposal-optional-catch-binding-7.0.0" = {
+      name = "_at_babel_slash_plugin-proposal-optional-catch-binding";
+      packageName = "@babel/plugin-proposal-optional-catch-binding";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-proposal-optional-catch-binding/-/plugin-proposal-optional-catch-binding-7.0.0.tgz";
+        sha512 = "JPqAvLG1s13B/AuoBjdBYvn38RqW6n1TzrQO839/sIpqLpbnXKacsAgpZHzLD83Sm8SDXMkkrAvEnJ25+0yIpw==";
+      };
+    };
+    "@babel/plugin-proposal-unicode-property-regex-7.0.0" = {
+      name = "_at_babel_slash_plugin-proposal-unicode-property-regex";
+      packageName = "@babel/plugin-proposal-unicode-property-regex";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-proposal-unicode-property-regex/-/plugin-proposal-unicode-property-regex-7.0.0.tgz";
+        sha512 = "tM3icA6GhC3ch2SkmSxv7J/hCWKISzwycub6eGsDrFDgukD4dZ/I+x81XgW0YslS6mzNuQ1Cbzh5osjIMgepPQ==";
+      };
+    };
+    "@babel/plugin-syntax-async-generators-7.0.0" = {
+      name = "_at_babel_slash_plugin-syntax-async-generators";
+      packageName = "@babel/plugin-syntax-async-generators";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-syntax-async-generators/-/plugin-syntax-async-generators-7.0.0.tgz";
+        sha512 = "im7ged00ddGKAjcZgewXmp1vxSZQQywuQXe2B1A7kajjZmDeY/ekMPmWr9zJgveSaQH0k7BcGrojQhcK06l0zA==";
+      };
+    };
+    "@babel/plugin-syntax-class-properties-7.0.0" = {
+      name = "_at_babel_slash_plugin-syntax-class-properties";
+      packageName = "@babel/plugin-syntax-class-properties";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-syntax-class-properties/-/plugin-syntax-class-properties-7.0.0.tgz";
+        sha512 = "cR12g0Qzn4sgkjrbrzWy2GE7m9vMl/sFkqZ3gIpAQdrvPDnLM8180i+ANDFIXfjHo9aqp0ccJlQ0QNZcFUbf9w==";
+      };
+    };
+    "@babel/plugin-syntax-json-strings-7.0.0" = {
+      name = "_at_babel_slash_plugin-syntax-json-strings";
+      packageName = "@babel/plugin-syntax-json-strings";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-syntax-json-strings/-/plugin-syntax-json-strings-7.0.0.tgz";
+        sha512 = "UlSfNydC+XLj4bw7ijpldc1uZ/HB84vw+U6BTuqMdIEmz/LDe63w/GHtpQMdXWdqQZFeAI9PjnHe/vDhwirhKA==";
+      };
+    };
+    "@babel/plugin-syntax-object-rest-spread-7.0.0" = {
+      name = "_at_babel_slash_plugin-syntax-object-rest-spread";
+      packageName = "@babel/plugin-syntax-object-rest-spread";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-syntax-object-rest-spread/-/plugin-syntax-object-rest-spread-7.0.0.tgz";
+        sha512 = "5A0n4p6bIiVe5OvQPxBnesezsgFJdHhSs3uFSvaPdMqtsovajLZ+G2vZyvNe10EzJBWWo3AcHGKhAFUxqwp2dw==";
+      };
+    };
+    "@babel/plugin-syntax-optional-catch-binding-7.0.0" = {
+      name = "_at_babel_slash_plugin-syntax-optional-catch-binding";
+      packageName = "@babel/plugin-syntax-optional-catch-binding";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-syntax-optional-catch-binding/-/plugin-syntax-optional-catch-binding-7.0.0.tgz";
+        sha512 = "Wc+HVvwjcq5qBg1w5RG9o9RVzmCaAg/Vp0erHCKpAYV8La6I94o4GQAmFYNmkzoMO6gzoOSulpKeSSz6mPEoZw==";
+      };
+    };
+    "@babel/plugin-transform-arrow-functions-7.0.0" = {
+      name = "_at_babel_slash_plugin-transform-arrow-functions";
+      packageName = "@babel/plugin-transform-arrow-functions";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-transform-arrow-functions/-/plugin-transform-arrow-functions-7.0.0.tgz";
+        sha512 = "2EZDBl1WIO/q4DIkIp4s86sdp4ZifL51MoIviLY/gG/mLSuOIEg7J8o6mhbxOTvUJkaN50n+8u41FVsr5KLy/w==";
+      };
+    };
+    "@babel/plugin-transform-async-to-generator-7.1.0" = {
+      name = "_at_babel_slash_plugin-transform-async-to-generator";
+      packageName = "@babel/plugin-transform-async-to-generator";
+      version = "7.1.0";
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+      packageName = "@babel/plugin-transform-literals";
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+      };
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+    "@babel/plugin-transform-modules-amd-7.1.0" = {
+      name = "_at_babel_slash_plugin-transform-modules-amd";
+      packageName = "@babel/plugin-transform-modules-amd";
+      version = "7.1.0";
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+        url = "https://registry.npmjs.org/@babel/plugin-transform-modules-amd/-/plugin-transform-modules-amd-7.1.0.tgz";
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+      };
+    };
+    "@babel/plugin-transform-modules-commonjs-7.1.0" = {
+      name = "_at_babel_slash_plugin-transform-modules-commonjs";
+      packageName = "@babel/plugin-transform-modules-commonjs";
+      version = "7.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-transform-modules-commonjs/-/plugin-transform-modules-commonjs-7.1.0.tgz";
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+      };
+    };
+    "@babel/plugin-transform-modules-systemjs-7.1.3" = {
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+      packageName = "@babel/plugin-transform-modules-systemjs";
+      version = "7.1.3";
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+        url = "https://registry.npmjs.org/@babel/plugin-transform-modules-systemjs/-/plugin-transform-modules-systemjs-7.1.3.tgz";
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+      };
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+    "@babel/plugin-transform-modules-umd-7.1.0" = {
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+      packageName = "@babel/plugin-transform-modules-umd";
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+      packageName = "@babel/plugin-transform-new-target";
+      version = "7.0.0";
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+        url = "https://registry.npmjs.org/@babel/plugin-transform-new-target/-/plugin-transform-new-target-7.0.0.tgz";
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+      };
+    };
+    "@babel/plugin-transform-object-super-7.1.0" = {
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+      packageName = "@babel/plugin-transform-object-super";
+      version = "7.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-transform-object-super/-/plugin-transform-object-super-7.1.0.tgz";
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+      };
+    };
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+      packageName = "@babel/plugin-transform-parameters";
+      version = "7.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-transform-parameters/-/plugin-transform-parameters-7.1.0.tgz";
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+      };
+    };
+    "@babel/plugin-transform-regenerator-7.0.0" = {
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+      packageName = "@babel/plugin-transform-regenerator";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-transform-regenerator/-/plugin-transform-regenerator-7.0.0.tgz";
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+      };
+    };
+    "@babel/plugin-transform-runtime-7.1.0" = {
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+      packageName = "@babel/plugin-transform-runtime";
+      version = "7.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-transform-runtime/-/plugin-transform-runtime-7.1.0.tgz";
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+      };
+    };
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+      name = "_at_babel_slash_plugin-transform-shorthand-properties";
+      packageName = "@babel/plugin-transform-shorthand-properties";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-transform-shorthand-properties/-/plugin-transform-shorthand-properties-7.0.0.tgz";
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+    "@babel/plugin-transform-spread-7.0.0" = {
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+      packageName = "@babel/plugin-transform-spread";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-transform-spread/-/plugin-transform-spread-7.0.0.tgz";
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+      };
+    };
+    "@babel/plugin-transform-sticky-regex-7.0.0" = {
+      name = "_at_babel_slash_plugin-transform-sticky-regex";
+      packageName = "@babel/plugin-transform-sticky-regex";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-transform-sticky-regex/-/plugin-transform-sticky-regex-7.0.0.tgz";
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+      };
+    };
+    "@babel/plugin-transform-template-literals-7.0.0" = {
+      name = "_at_babel_slash_plugin-transform-template-literals";
+      packageName = "@babel/plugin-transform-template-literals";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-transform-template-literals/-/plugin-transform-template-literals-7.0.0.tgz";
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+      };
+    };
+    "@babel/plugin-transform-typeof-symbol-7.0.0" = {
+      name = "_at_babel_slash_plugin-transform-typeof-symbol";
+      packageName = "@babel/plugin-transform-typeof-symbol";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-transform-typeof-symbol/-/plugin-transform-typeof-symbol-7.0.0.tgz";
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+      };
+    };
+    "@babel/plugin-transform-unicode-regex-7.0.0" = {
+      name = "_at_babel_slash_plugin-transform-unicode-regex";
+      packageName = "@babel/plugin-transform-unicode-regex";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/plugin-transform-unicode-regex/-/plugin-transform-unicode-regex-7.0.0.tgz";
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+      };
+    };
+    "@babel/polyfill-7.0.0" = {
+      name = "_at_babel_slash_polyfill";
+      packageName = "@babel/polyfill";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/polyfill/-/polyfill-7.0.0.tgz";
+        sha512 = "dnrMRkyyr74CRelJwvgnnSUDh2ge2NCTyHVwpOdvRMHtJUyxLtMAfhBN3s64pY41zdw0kgiLPh6S20eb1NcX6Q==";
+      };
+    };
+    "@babel/preset-env-7.1.5" = {
+      name = "_at_babel_slash_preset-env";
+      packageName = "@babel/preset-env";
+      version = "7.1.5";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/preset-env/-/preset-env-7.1.5.tgz";
+        sha512 = "pQ+2o0YyCp98XG0ODOHJd9z4GsSoV5jicSedRwCrU8uiqcJahwQiOq0asSZEb/m/lwyu6X5INvH/DSiwnQKncw==";
+      };
+    };
+    "@babel/preset-stage-2-7.0.0" = {
+      name = "_at_babel_slash_preset-stage-2";
+      packageName = "@babel/preset-stage-2";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/preset-stage-2/-/preset-stage-2-7.0.0.tgz";
+        sha512 = "A8ia2Wus0OAP6hh28ZgPSCBJEX3Jnql3kg9di/I+Lmg1gbJXgDZBrHr/UGZXl20Vi1lXgMuUq8c8J899KFr5gA==";
+      };
+    };
+    "@babel/register-7.0.0" = {
+      name = "_at_babel_slash_register";
+      packageName = "@babel/register";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/register/-/register-7.0.0.tgz";
+        sha512 = "f/+CRmaCe7rVEvcvPvxeA8j5aJhHC3aJie7YuqcMDhUOuyWLA7J/aNrTaHIzoWPEhpHA54mec4Mm8fv8KBlv3g==";
+      };
+    };
+    "@babel/runtime-7.1.5" = {
+      name = "_at_babel_slash_runtime";
+      packageName = "@babel/runtime";
+      version = "7.1.5";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/runtime/-/runtime-7.1.5.tgz";
+        sha512 = "xKnPpXG/pvK1B90JkwwxSGii90rQGKtzcMt2gI5G6+M0REXaq6rOHsGC2ay6/d0Uje7zzvSzjEzfR3ENhFlrfA==";
+      };
+    };
+    "@babel/runtime-corejs2-7.1.5" = {
       name = "_at_babel_slash_runtime-corejs2";
       packageName = "@babel/runtime-corejs2";
-      version = "7.1.2";
+      version = "7.1.5";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@babel/runtime-corejs2/-/runtime-corejs2-7.1.2.tgz";
-        sha512 = "drxaPByExlcRDKW4ZLubUO4ZkI8/8ax9k9wve1aEthdLKFzjB7XRkOQ0xoTIWGxqdDnWDElkjYq77bt7yrcYJQ==";
+        url = "https://registry.npmjs.org/@babel/runtime-corejs2/-/runtime-corejs2-7.1.5.tgz";
+        sha512 = "WsYRwQsFhVmxkAqwypPTZyV9GpkqMEaAr2zOItOmqSX2GBFaI+eq98CN81e13o0zaUKJOQGYyjhNVqj56nnkYg==";
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     "@babel/template-7.1.2" = {
@@ -94,6 +688,15 @@ let
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       };
     };
+    "@babel/traverse-7.1.5" = {
+      name = "_at_babel_slash_traverse";
+      packageName = "@babel/traverse";
+      version = "7.1.5";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@babel/traverse/-/traverse-7.1.5.tgz";
+        sha512 = "eU6XokWypl0MVJo+MTSPUtlfPePkrqsF26O+l1qFGlCKWwmiYAYy2Sy44Qw8m2u/LbPCsxYt90rghmqhYMGpPA==";
+      };
+    };
     "@babel/types-7.0.0-beta.38" = {
       name = "_at_babel_slash_types";
       packageName = "@babel/types";
@@ -103,13 +706,22 @@ let
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       };
     };
-    "@babel/types-7.1.3" = {
+    "@babel/types-7.1.5" = {
       name = "_at_babel_slash_types";
       packageName = "@babel/types";
-      version = "7.1.3";
+      version = "7.1.5";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@babel/types/-/types-7.1.3.tgz";
-        sha512 = "RpPOVfK+yatXyn8n4PB1NW6k9qjinrXrRR8ugBN8fD6hCy5RXI6PSbVqpOJBO9oSaY7Nom4ohj35feb0UR9hSA==";
+        url = "https://registry.npmjs.org/@babel/types/-/types-7.1.5.tgz";
+        sha512 = "sJeqa/d9eM/bax8Ivg+fXF7FpN3E/ZmTrWbkk6r+g7biVYfALMnLin4dKijsaqEhpd2xvOGfQTkQkD31YCVV4A==";
+      };
+    };
+    "@calebboyd/semaphore-1.3.1" = {
+      name = "_at_calebboyd_slash_semaphore";
+      packageName = "@calebboyd/semaphore";
+      version = "1.3.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@calebboyd/semaphore/-/semaphore-1.3.1.tgz";
+        sha512 = "17z9me12RgAEcMhIgR7f+BiXKbzwF9p1VraI69OxrUUSWGuSMOyOTEHQNVtMKuVrkEDVD0/Av5uiGZPBMYZljw==";
       };
     };
     "@cliqz-oss/firefox-client-0.3.1" = {
@@ -130,6 +742,15 @@ let
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       };
     };
+    "@comandeer/babel-plugin-banner-4.0.0" = {
+      name = "_at_comandeer_slash_babel-plugin-banner";
+      packageName = "@comandeer/babel-plugin-banner";
+      version = "4.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@comandeer/babel-plugin-banner/-/babel-plugin-banner-4.0.0.tgz";
+        sha512 = "JhkNsBm8n4Z3rU1Sl2ivPX+Gd3dBcxLUdhLrn3Yok33uBGmoT0wNspXjOgToPxFqDAHHAWj83uj7MSLEJCLpxQ==";
+      };
+    };
     "@commitlint/cli-7.2.1" = {
       name = "_at_commitlint_slash_cli";
       packageName = "@commitlint/cli";
@@ -931,6 +1552,15 @@ let
         sha1 = "a777360b5b39a1a2e5106f8e858f2fd2d060c570";
       };
     };
+    "@sindresorhus/is-0.12.0" = {
+      name = "_at_sindresorhus_slash_is";
+      packageName = "@sindresorhus/is";
+      version = "0.12.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@sindresorhus/is/-/is-0.12.0.tgz";
+        sha512 = "9ve22cGrAKlSRvi8Vb2JIjzcaaQg79531yQHnF+hi/kOpsSj3Om8AyR1wcHrgl0u7U3vYQ7gmF5erZzOp4+51Q==";
+      };
+    };
     "@sindresorhus/is-0.7.0" = {
       name = "_at_sindresorhus_slash_is";
       packageName = "@sindresorhus/is";
@@ -940,6 +1570,15 @@ let
         sha512 = "ONhaKPIufzzrlNbqtWFFd+jlnemX6lJAgq9ZeiZtS7I1PIf/la7CW4m83rTXRnVnsMbW2k56pGYu7AUFJD9Pow==";
       };
     };
+    "@szmarczak/http-timer-1.1.1" = {
+      name = "_at_szmarczak_slash_http-timer";
+      packageName = "@szmarczak/http-timer";
+      version = "1.1.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@szmarczak/http-timer/-/http-timer-1.1.1.tgz";
+        sha512 = "WljfOGkmSJe8SUkl+4TPvN2ec0dpUGVyfTBQLoXJUiILs+wBSc4Kvp2N3aAWE4VwwDSLGdmD3/bufS5BgZpVSQ==";
+      };
+    };
     "@types/accepts-1.3.5" = {
       name = "_at_types_slash_accepts";
       packageName = "@types/accepts";
@@ -1012,6 +1651,15 @@ let
         sha512 = "ipZjBVsm2tF/n8qFGOuGBkUij9X9ZswVi9G3bx/6dz7POpVa6gVHcj1wsX/LVEn9MMF41fxK/PnZPPoTD1UFPw==";
       };
     };
+    "@types/estree-0.0.39" = {
+      name = "_at_types_slash_estree";
+      packageName = "@types/estree";
+      version = "0.0.39";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/@types/estree/-/estree-0.0.39.tgz";
+        sha512 = "EYNwp3bU+98cpU4lAWYYL7Zz+2gryWH1qbdDTidVd6hkiR6weksdbMadyXKXNPEkQFhXM+hVO9ZygomHXp+AIw==";
+      };
+    };
     "@types/events-1.2.0" = {
       name = "_at_types_slash_events";
       packageName = "@types/events";
@@ -1057,13 +1705,13 @@ let
         sha512 = "A2TAGbTFdBw9azHbpVd+/FkdW2T6msN1uct1O9bH3vTerEHKZhTXJUQXy+hNq1B0RagfU8U+KBdqiZpxjhOUQA==";
       };
     };
-    "@types/node-10.12.2" = {
+    "@types/node-10.12.5" = {
       name = "_at_types_slash_node";
       packageName = "@types/node";
-      version = "10.12.2";
+      version = "10.12.5";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@types/node/-/node-10.12.2.tgz";
-        sha512 = "53ElVDSnZeFUUFIYzI8WLQ25IhWzb6vbddNp8UHlXQyU0ET2RhV5zg0NfubzU7iNMh5bBXb0htCzfvrSVNgzaQ==";
+        url = "https://registry.npmjs.org/@types/node/-/node-10.12.5.tgz";
+        sha512 = "GzdHjq3t3eGLMv92Al90Iq+EoLL+86mPfQhuglbBFO7HiLdC/rkt+zrzJJumAiBF6nsrBWhou22rPW663AAyFw==";
       };
     };
     "@types/node-8.10.37" = {
@@ -1111,13 +1759,13 @@ let
         sha512 = "kdU8ydio1weSvhIIh9rptZ6MdMiR2NQGFnlnZ5qQ7OiQS1ej79zK4GaJ9qX3naSTpOA7iWqwUnZCQpd7SpD1NA==";
       };
     };
-    "@types/ws-5.1.2" = {
+    "@types/ws-6.0.1" = {
       name = "_at_types_slash_ws";
       packageName = "@types/ws";
-      version = "5.1.2";
+      version = "6.0.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/@types/ws/-/ws-5.1.2.tgz";
-        sha512 = "NkTXUKTYdXdnPE2aUUbGOXE1XfMK527SCvU/9bj86kyFF6kZ9ZnOQ3mK5jADn98Y2vEUD/7wKDgZa7Qst2wYOg==";
+        url = "https://registry.npmjs.org/@types/ws/-/ws-6.0.1.tgz";
+        sha512 = "EzH8k1gyZ4xih/MaZTXwT2xOkPiIMSrhQ9b8wrlX88L0T02eYsddatQlwVFlEPyEqV0ChpdpNnE51QPH6NVT4Q==";
       };
     };
     "@types/zen-observable-0.8.0" = {
@@ -1561,6 +2209,15 @@ let
         sha512 = "3OOR92FTc2p5/EcOzPcXp+Cbo+3C15nV9RXHlOUBCBpHhcB+0frbSNR9ehED/o7sTcyGVtqGJpguToEdlXhD0w==";
       };
     };
+    "ace.improved-0.2.1" = {
+      name = "ace.improved";
+      packageName = "ace.improved";
+      version = "0.2.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/ace.improved/-/ace.improved-0.2.1.tgz";
+        sha1 = "4d74628fc431b09cdcaa1fb2b23d1ec83c5d2f32";
+      };
+    };
     "acorn-1.2.2" = {
       name = "acorn";
       packageName = "acorn";
@@ -1678,6 +2335,15 @@ let
         sha512 = "XkB50fn0MURDyww9+UYL3c1yLbOBz0ZFvrdYlGB8l+Ije1oSC75qAqrzSPjYQbdnQUzhlUGNKuesryAv0gxZOg==";
       };
     };
+    "acorn-loose-6.0.0" = {
+      name = "acorn-loose";
+      packageName = "acorn-loose";
+      version = "6.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/acorn-loose/-/acorn-loose-6.0.0.tgz";
+        sha512 = "gJff4bSdy882CwS6toeHixdBn9+IP8ojffjCW9hXnb2Ly7uVyAMaH2pLehtwS10wj2FIQ9Iw564MTDSsaQW9ng==";
+      };
+    };
     "acorn-node-1.6.2" = {
       name = "acorn-node";
       packageName = "acorn-node";
@@ -1741,13 +2407,13 @@ let
         sha1 = "f291be701a2efc567a63fc7aa6afcded31430be1";
       };
     };
-    "addons-linter-1.3.1" = {
+    "addons-linter-1.3.8" = {
       name = "addons-linter";
       packageName = "addons-linter";
-      version = "1.3.1";
+      version = "1.3.8";
       src = fetchurl {
-        url = "https://registry.npmjs.org/addons-linter/-/addons-linter-1.3.1.tgz";
-        sha512 = "Oaj8q8hXWwGhrzlMTM7LUxj5ZUxi8k8/pg0V/NlA3usgClngl7jXW4GRlobdoOao8KEnW95y/WNNMeoTbxYe4w==";
+        url = "https://registry.npmjs.org/addons-linter/-/addons-linter-1.3.8.tgz";
+        sha512 = "NFon8Q++k8R6t1lunNPoVPWxVUzC8ED5Cu8VB66HdsaVarLHNhIdpDSqClplefC5Mypx/EEgZhkMZAuaxScyUg==";
       };
     };
     "addr-to-ip-port-1.5.1" = {
@@ -1903,15 +2569,6 @@ let
         sha1 = "73b5eeca3fab653e3d3f9422b341ad42205dc965";
       };
     };
-    "ajv-6.5.2" = {
-      name = "ajv";
-      packageName = "ajv";
-      version = "6.5.2";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/ajv/-/ajv-6.5.2.tgz";
-        sha512 = "hOs7GfvI6tUI1LfZddH82ky6mOMyTuY0mk7kE2pWpmhhUSkumzaTO5vbVwij39MdwPQWCV4Zv57Eo06NtL/GVA==";
-      };
-    };
     "ajv-6.5.3" = {
       name = "ajv";
       packageName = "ajv";
@@ -1984,13 +2641,13 @@ let
         sha1 = "0cd90a561093f35d0a99256c22b7069433fad117";
       };
     };
-    "aligned-block-file-1.1.3" = {
+    "aligned-block-file-1.1.4" = {
       name = "aligned-block-file";
       packageName = "aligned-block-file";
-      version = "1.1.3";
+      version = "1.1.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/aligned-block-file/-/aligned-block-file-1.1.3.tgz";
-        sha512 = "ai/S+nZ9XMjC0ReZfq94OLGCICVBJyhNiKWmF1J+/GVZZaXtYV805plMi9obaWjfNl/QljB+VOsT+wQ7R858xA==";
+        url = "https://registry.npmjs.org/aligned-block-file/-/aligned-block-file-1.1.4.tgz";
+        sha512 = "KE27h781ueGONLqSBY2ik6LJRr9vo0L/i3GGhtQgJfCk0MO2QNSgrXZVCk2t7UeZKYTxcTfl+yBgcZWqBiAGPQ==";
       };
     };
     "almond-0.3.3" = {
@@ -2290,13 +2947,13 @@ let
         sha512 = "+Du0/4kUSuf5PjPx0+pvgMGV12ezbHA8/hubYuqRQoy/4AWb4faa61CgJNI6cKz2mhDd9m94VTNKTX11NntwkQ==";
       };
     };
-    "apollo-cache-control-0.2.5" = {
+    "apollo-cache-control-0.3.0" = {
       name = "apollo-cache-control";
       packageName = "apollo-cache-control";
-      version = "0.2.5";
+      version = "0.3.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/apollo-cache-control/-/apollo-cache-control-0.2.5.tgz";
-        sha512 = "xEDrUvo3U2mQKSzA8NzQmgeqK4ytwFnTGl2YKGKPfG0+r8fZdswKp6CDBue29KLO8KkSuqW/hntveWrAdK51FQ==";
+        url = "https://registry.npmjs.org/apollo-cache-control/-/apollo-cache-control-0.3.0.tgz";
+        sha512 = "XtkinmravL9/IEAPXzJod9fKx4iesS0TNBV/619xwurv8eopZkbAiKVZ3WB4rbjoGQpBgEs0bekWIAhYGWLyOw==";
       };
     };
     "apollo-cache-inmemory-1.3.9" = {
@@ -2326,31 +2983,31 @@ let
         sha512 = "jlxz/b5iinRWfh48hXdmMtrjTPn/rDok0Z3b7icvkiaD6I30w4sq9B+JDkFbLnkldzsFLV2BZtBDa/dkZhx8Ng==";
       };
     };
-    "apollo-datasource-0.1.3" = {
+    "apollo-datasource-0.2.0" = {
       name = "apollo-datasource";
       packageName = "apollo-datasource";
-      version = "0.1.3";
+      version = "0.2.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/apollo-datasource/-/apollo-datasource-0.1.3.tgz";
-        sha512 = "yEGEe5Cjzqqu5ml1VV3O8+C+thzdknZri9Ny0P3daTGNO+45J3vBOMcmaANeeI2+OOeWxdqUNa5aPOx/35kniw==";
+        url = "https://registry.npmjs.org/apollo-datasource/-/apollo-datasource-0.2.0.tgz";
+        sha512 = "WJM9Ix3uogIfAG7mjL1NZQM9+45rcikn4mPWhE1Iuyw2+Y857J3uKJqQgF5h9Fg64SlCJh9u5WL3N7N5mg1fVw==";
       };
     };
-    "apollo-engine-reporting-0.0.6" = {
+    "apollo-engine-reporting-0.1.0" = {
       name = "apollo-engine-reporting";
       packageName = "apollo-engine-reporting";
-      version = "0.0.6";
+      version = "0.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/apollo-engine-reporting/-/apollo-engine-reporting-0.0.6.tgz";
-        sha512 = "JmfNJ9v3QEJQ8ZhLfCKEDiww53n5kj5HarP85p8LreoYNojbvcWN8Qm6RgvSG5N/ZJrAYHeTRQbSxm1vWwGubw==";
+        url = "https://registry.npmjs.org/apollo-engine-reporting/-/apollo-engine-reporting-0.1.0.tgz";
+        sha512 = "OjG9MmNWRS3ZMSDc44Z6QMFQ66VDzs/E4H1yZELZ77BVrLsDx4i8Fft95byywACUpLvXhrCRtOdSZIwRPDq+cw==";
       };
     };
-    "apollo-engine-reporting-protobuf-0.0.1" = {
+    "apollo-engine-reporting-protobuf-0.1.0" = {
       name = "apollo-engine-reporting-protobuf";
       packageName = "apollo-engine-reporting-protobuf";
-      version = "0.0.1";
+      version = "0.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/apollo-engine-reporting-protobuf/-/apollo-engine-reporting-protobuf-0.0.1.tgz";
-        sha512 = "AySoDgog2p1Nph44FyyqaU4AfRZOXx8XZxRsVHvYY4dHlrMmDDhhjfF3Jswa7Wr8X/ivvx3xA0jimRn6rsG8Ew==";
+        url = "https://registry.npmjs.org/apollo-engine-reporting-protobuf/-/apollo-engine-reporting-protobuf-0.1.0.tgz";
+        sha512 = "GReJtAYTmpwg0drb9VgFtqObYYTCHkJhlHEYCeXY8bJV4fOgXsAZ7CIXR9nPKO0mBaoHIHaGYvXGcyCLrZ36VA==";
       };
     };
     "apollo-link-1.2.3" = {
@@ -2416,58 +3073,67 @@ let
         sha512 = "CtKwLE61bCJTW5jrucOMm5PubeAlCl/9i45pg4GKKlAbl0zR4i2dww8TJkYoIY6iCyj4qjKW/uqGD6v5/aVwhg==";
       };
     };
-    "apollo-server-caching-0.1.2" = {
+    "apollo-server-caching-0.2.0" = {
       name = "apollo-server-caching";
       packageName = "apollo-server-caching";
-      version = "0.1.2";
+      version = "0.2.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/apollo-server-caching/-/apollo-server-caching-0.1.2.tgz";
-        sha512 = "jBRnsTgXN0m8yVpumoelaUq9mXR7YpJ3EE+y/alI7zgXY+0qFDqksRApU8dEfg3q6qUnO7rFxRhdG5eyc0+1ig==";
+        url = "https://registry.npmjs.org/apollo-server-caching/-/apollo-server-caching-0.2.0.tgz";
+        sha512 = "/v7xWEcyyahs3hwX4baH/GekuHz3LRt9NoIYwg869G1eeqjuwY6NsowRIujZ100anJQwm9v5A9/sLtHBFvbgYg==";
       };
     };
-    "apollo-server-core-2.1.0" = {
+    "apollo-server-core-2.2.0" = {
       name = "apollo-server-core";
       packageName = "apollo-server-core";
-      version = "2.1.0";
+      version = "2.2.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/apollo-server-core/-/apollo-server-core-2.1.0.tgz";
-        sha512 = "D1Tw0o3NzCQ2KGM8EWh9AHELHmn/SE361dtlqJxkbelxXqAkCIGIFywF30h+0ezhMbgbO7eqBBJfvRilF/oJHA==";
+        url = "https://registry.npmjs.org/apollo-server-core/-/apollo-server-core-2.2.0.tgz";
+        sha512 = "Pd9YpC/xSzpVOr6KM5bDHQdcI8jjKu3hb8x7eyevh/Q7eyrF+ClmfPZvY5EnG4ETIJsTS0+fU1dnoGMmyxCBKw==";
       };
     };
-    "apollo-server-env-2.0.3" = {
+    "apollo-server-env-2.2.0" = {
       name = "apollo-server-env";
       packageName = "apollo-server-env";
-      version = "2.0.3";
+      version = "2.2.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/apollo-server-env/-/apollo-server-env-2.0.3.tgz";
-        sha512 = "uIfKFH8n8xKO0eLb9Fa79+s2DdMuVethgznvW6SrOYq5VzgkIIobqKEuZPKa5wObw9CkCyju/+Sr7b7WWMFxUQ==";
+        url = "https://registry.npmjs.org/apollo-server-env/-/apollo-server-env-2.2.0.tgz";
+        sha512 = "wjJiI5nQWPBpNmpiLP389Ezpstp71szS6DHAeTgYLb/ulCw3CTuuA+0/E1bsThVWiQaDeHZE0sE3yI8q2zrYiA==";
       };
     };
-    "apollo-server-errors-2.0.2" = {
+    "apollo-server-errors-2.2.0" = {
       name = "apollo-server-errors";
       packageName = "apollo-server-errors";
-      version = "2.0.2";
+      version = "2.2.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/apollo-server-errors/-/apollo-server-errors-2.0.2.tgz";
-        sha512 = "zyWDqAVDCkj9espVsoUpZr9PwDznM8UW6fBfhV+i1br//s2AQb07N6ektZ9pRIEvkhykDZW+8tQbDwAO0vUROg==";
+        url = "https://registry.npmjs.org/apollo-server-errors/-/apollo-server-errors-2.2.0.tgz";
+        sha512 = "gV9EZG2tovFtT1cLuCTavnJu2DaKxnXPRNGSTo+SDI6IAk6cdzyW0Gje5N2+3LybI0Wq5KAbW6VLei31S4MWmg==";
       };
     };
-    "apollo-server-express-2.1.0" = {
+    "apollo-server-express-2.2.0" = {
       name = "apollo-server-express";
       packageName = "apollo-server-express";
-      version = "2.1.0";
+      version = "2.2.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/apollo-server-express/-/apollo-server-express-2.1.0.tgz";
-        sha512 = "jLFIz1VLduMA/rme4OAy3IPeoaMEZOPoQXpio8AhfjIqCijRPPfoWJ2QMqz56C/g3vas7rZtgcVOrHpjBKudjw==";
+        url = "https://registry.npmjs.org/apollo-server-express/-/apollo-server-express-2.2.0.tgz";
+        sha512 = "E6WpImvCHKR9MHs64gTHhMrehk6/1NRE2+bblsHZg7ot8Iy6hVmzsCIzSmlPYh5uozpcyeRdC1pV0nwERtQKog==";
       };
     };
-    "apollo-tracing-0.2.5" = {
+    "apollo-server-plugin-base-0.1.0" = {
+      name = "apollo-server-plugin-base";
+      packageName = "apollo-server-plugin-base";
+      version = "0.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/apollo-server-plugin-base/-/apollo-server-plugin-base-0.1.0.tgz";
+        sha512 = "ptaVBjR+Q1swdzsh84tY5Qb0yyTMO/IOBsBJzCdxuAKs+PAVFw7ZMQoe5bT0DJjKJXHjtfMiTF77mRLLBq2dEw==";
+      };
+    };
+    "apollo-tracing-0.3.0" = {
       name = "apollo-tracing";
       packageName = "apollo-tracing";
-      version = "0.2.5";
+      version = "0.3.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/apollo-tracing/-/apollo-tracing-0.2.5.tgz";
-        sha512 = "DZO7pfL5LATHeJdVFoTZ/N3HwA+IMf1YnIt5K+uMQW+/MrRgYOtTszUv5tYX2cUIqHYHcbdDaBQUuIXwSpaV2Q==";
+        url = "https://registry.npmjs.org/apollo-tracing/-/apollo-tracing-0.3.0.tgz";
+        sha512 = "fkSpvzldDo1jBFap0d5lJYghEiH55eRVQzrC6vGvwr7rZNK5Moznwn9sBqy+4QsOaIp+wYc6pz/a+hwG4pasig==";
       };
     };
     "apollo-upload-client-9.1.0" = {
@@ -2488,6 +3154,15 @@ let
         sha512 = "AXvqkhni3Ir1ffm4SA1QzXn8k8I5BBl4PVKEyak734i4jFdp+xgfUyi2VCqF64TJlFTA/B73TRDUvO2D+tKtZg==";
       };
     };
+    "app-builder-5.2.0" = {
+      name = "app-builder";
+      packageName = "app-builder";
+      version = "5.2.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/app-builder/-/app-builder-5.2.0.tgz";
+        sha512 = "RRj/vu8WhmMM71G9BxMLRvcwpr1QUJZ9NXURGGo1v3fPiauzkQfNi31kM7irRNqR87NV+lJ/qI62iTzcAc+V0Q==";
+      };
+    };
     "append-0.1.1" = {
       name = "append";
       packageName = "append";
@@ -2578,6 +3253,15 @@ let
         sha512 = "BLM56aPo9vLLFVa8+/+pJLnrZ7QGGTVHWsCwieAWT9o9K8UeGaQbzZbGoabWLOo2ksBCztoXdqBZBplqLDDCSg==";
       };
     };
+    "archive-type-4.0.0" = {
+      name = "archive-type";
+      packageName = "archive-type";
+      version = "4.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/archive-type/-/archive-type-4.0.0.tgz";
+        sha1 = "f92e72233056dfc6969472749c267bdb046b1d70";
+      };
+    };
     "archiver-2.1.1" = {
       name = "archiver";
       packageName = "archiver";
@@ -3334,13 +4018,13 @@ let
         sha1 = "00f35b2d27ac91b1f0d3ef2084c98cf1d1f0adc3";
       };
     };
-    "aws-sdk-2.349.0" = {
+    "aws-sdk-2.353.0" = {
       name = "aws-sdk";
       packageName = "aws-sdk";
-      version = "2.349.0";
+      version = "2.353.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.349.0.tgz";
-        sha512 = "yGYCvXOKpvLfbhh1Vo+/2q+Z5bRdPlFpXX3kHBGz4haI6ZoLfFGuztap4en83zim/wpG1ZrhVJjd9u+i9l1ZEA==";
+        url = "https://registry.npmjs.org/aws-sdk/-/aws-sdk-2.353.0.tgz";
+        sha512 = "c5MwJhfcHwA2lC1Wq9csQvP9gz8dVGpZ64s5j9f/sWY6eZiDCQ6OWjxj+VJfpnCmfxyC/pdZO7JDGwems7dqIQ==";
       };
     };
     "aws-sign-0.2.1" = {
@@ -3397,31 +4081,31 @@ let
         sha1 = "56b558ba43b9cb5657662251dabe3cb34c16c56f";
       };
     };
-    "azure-arm-batch-3.1.2" = {
+    "azure-arm-batch-3.2.0" = {
       name = "azure-arm-batch";
       packageName = "azure-arm-batch";
-      version = "3.1.2";
+      version = "3.2.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/azure-arm-batch/-/azure-arm-batch-3.1.2.tgz";
-        sha512 = "4jAqSLNrQvdjq6/BmKSkvIUZj7gUpJnf/cOgxs/gbHNluOhIm19RRrD7yzeriGcx1fzIDZGQ7iPmF6kI9CW7xQ==";
+        url = "https://registry.npmjs.org/azure-arm-batch/-/azure-arm-batch-3.2.0.tgz";
+        sha512 = "DDfgAiRruGAiL8Yot5nufG3O8GLA0r5lf1CGYhuF8pEzQ+vYfhLpgJzme7LPh3ASPb8UBSVYHm1IK4W4StvVnw==";
       };
     };
-    "azure-arm-cdn-4.0.2" = {
+    "azure-arm-cdn-4.1.0" = {
       name = "azure-arm-cdn";
       packageName = "azure-arm-cdn";
-      version = "4.0.2";
+      version = "4.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/azure-arm-cdn/-/azure-arm-cdn-4.0.2.tgz";
-        sha512 = "qDxDfmBGpV4oDodfWo1BQmPs8ibOL55To+cu9OlhBGHbbzLIZclsHZucOElCtQHSKWuQMjhWRc+RF8eUSRqrxA==";
+        url = "https://registry.npmjs.org/azure-arm-cdn/-/azure-arm-cdn-4.1.0.tgz";
+        sha512 = "5xD2CkCx5ONn1vaGa4USAzv3LtCs0kmZCkdSNj98eQlQJLJQ7RPpIsNAXHGuHX4yN+EKHdaA2/hC/ynuQujNEQ==";
       };
     };
-    "azure-arm-commerce-2.0.0" = {
+    "azure-arm-commerce-2.1.0" = {
       name = "azure-arm-commerce";
       packageName = "azure-arm-commerce";
-      version = "2.0.0";
+      version = "2.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/azure-arm-commerce/-/azure-arm-commerce-2.0.0.tgz";
-        sha512 = "scKBmo3nZXbzXtox+SoEYf8Ij+c2y1r47Ga0MVxm1kUTs1UT8KaAiAlC269KKDNYpuXXuV7+CKUs52VCiM06JQ==";
+        url = "https://registry.npmjs.org/azure-arm-commerce/-/azure-arm-commerce-2.1.0.tgz";
+        sha512 = "zhZ9b1Comp1Owa8/Pn7ORTL0l+uX9elz5A5yOoL/XdYXC8S6bN2QaiRLPmue9ZB55qGE1Tn7Cf+KRlpskL17hQ==";
       };
     };
     "azure-arm-compute-3.0.0-preview" = {
@@ -3519,7 +4203,7 @@ let
       packageName = "azure-arm-powerbiembedded";
       version = "0.1.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/azure-arm-powerbiembedded/-/azure-arm-powerbiembedded-0.1.1.tgz";
+        url = "http://registry.npmjs.org/azure-arm-powerbiembedded/-/azure-arm-powerbiembedded-0.1.1.tgz";
         sha1 = "7103c94e06b3ddf628293f60e02fd0ba8f9c3ca9";
       };
     };
@@ -3528,7 +4212,7 @@ let
       packageName = "azure-arm-rediscache";
       version = "0.2.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/azure-arm-rediscache/-/azure-arm-rediscache-0.2.3.tgz";
+        url = "http://registry.npmjs.org/azure-arm-rediscache/-/azure-arm-rediscache-0.2.3.tgz";
         sha1 = "b6898abe8b4c3e1b2ec5be82689ef212bc2b1a06";
       };
     };
@@ -3541,13 +4225,13 @@ let
         sha1 = "aa9a49fb9081a210f2f4cc6596ca4653b68306e6";
       };
     };
-    "azure-arm-resource-7.0.1" = {
+    "azure-arm-resource-7.1.0" = {
       name = "azure-arm-resource";
       packageName = "azure-arm-resource";
-      version = "7.0.1";
+      version = "7.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/azure-arm-resource/-/azure-arm-resource-7.0.1.tgz";
-        sha512 = "vimPiR/xf6TFWNooIXZM6gRQV7Gdqs0y2wzNF+SNSMxPj3h8XEuSL/SyRZHNULY7sJseAx+0aGjWXbZxQo+kVw==";
+        url = "https://registry.npmjs.org/azure-arm-resource/-/azure-arm-resource-7.1.0.tgz";
+        sha512 = "EzLJJYn1Qzwjc/ukikdj9N89J4Y9MphVL2gTxt092jqAZND3ecLS4QTVPzpwxQkLZF/Jo+ZPPQozxEDWuCRAQQ==";
       };
     };
     "azure-arm-servermanagement-1.1.0" = {
@@ -3577,13 +4261,13 @@ let
         sha1 = "b46cfcf7f1690e4739864dcdb5c8de322e82ec50";
       };
     };
-    "azure-arm-website-5.5.0" = {
+    "azure-arm-website-5.6.0" = {
       name = "azure-arm-website";
       packageName = "azure-arm-website";
-      version = "5.5.0";
+      version = "5.6.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/azure-arm-website/-/azure-arm-website-5.5.0.tgz";
-        sha512 = "fppYG7UtrFNtuMPlyIpWItC7D6pcU4Nhu0UAs9uew42jubQG+PTNRSCadGMuOlANCBEUVtAGMk4jfUU2UGhKTw==";
+        url = "https://registry.npmjs.org/azure-arm-website/-/azure-arm-website-5.6.0.tgz";
+        sha512 = "rG7SIGe5KFHmUW7V3Fia4mb7YSsnXWHYdXfCzpHXPBBxeY2gmpeyHXolrlpSFgvarsi5ucC+0B3iPiFxZZ53LA==";
       };
     };
     "azure-asm-compute-0.18.0" = {
@@ -3654,7 +4338,7 @@ let
       packageName = "azure-asm-subscription";
       version = "0.10.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/azure-asm-subscription/-/azure-asm-subscription-0.10.1.tgz";
+        url = "http://registry.npmjs.org/azure-asm-subscription/-/azure-asm-subscription-0.10.1.tgz";
         sha1 = "917a5e87a04b69c0f5c29339fe910bb5e5e7a04c";
       };
     };
@@ -3730,13 +4414,13 @@ let
         sha512 = "6HNA8VuC5qYvQMjcQt2/zlB7oyAJ7n6KGIYGstS6KS9Orux0peqxlrGPDeQRa4jDNq6ili83KiGc7RhWcgsE4Q==";
       };
     };
-    "azure-servicefabric-2.0.0" = {
+    "azure-servicefabric-2.1.0" = {
       name = "azure-servicefabric";
       packageName = "azure-servicefabric";
-      version = "2.0.0";
+      version = "2.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/azure-servicefabric/-/azure-servicefabric-2.0.0.tgz";
-        sha512 = "SkMg4vVrQ7Vd7/h8h3qZzURQysV4KJqUIy4pjs/XRjVbCduSePlJ3EOgAl9ed739RWkT906xIAU3tu2Pf5RKFQ==";
+        url = "https://registry.npmjs.org/azure-servicefabric/-/azure-servicefabric-2.1.0.tgz";
+        sha512 = "A/9b+iHbOy1Ix7OFMmzhn7+TyYxgoe0nOXI/cQJTvP6neoP5J64F4P5r/LmxS1I6TDmSe+3jGlqdql9PawChNw==";
       };
     };
     "azure-storage-2.10.2" = {
@@ -3766,6 +4450,24 @@ let
         sha512 = "6jyFLuDmeidKmUEb3NM+/yawG0M2bDZ9Z1qbZP59cyHLz8kYGKYwpJP0UwUKKUiTRNvxfLesJnTedqczP7cTDA==";
       };
     };
+    "babel-core-7.0.0-bridge.0" = {
+      name = "babel-core";
+      packageName = "babel-core";
+      version = "7.0.0-bridge.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-core/-/babel-core-7.0.0-bridge.0.tgz";
+        sha512 = "poPX9mZH/5CSanm50Q+1toVci6pv5KSRv/5TWCwtzQS5XEwn40BcCrgIeMFWP9CKKIniKXNxoIOnOq4VVlGXhg==";
+      };
+    };
+    "babel-eslint-10.0.1" = {
+      name = "babel-eslint";
+      packageName = "babel-eslint";
+      version = "10.0.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-eslint/-/babel-eslint-10.0.1.tgz";
+        sha512 = "z7OT1iNV+TjOwHNLLyJk+HN+YVWX+CLE6fPD2SymJZOZQBs+QIexFjhm4keGTm8MW9xr4EC9Q0PbaLB24V5GoQ==";
+      };
+    };
     "babel-generator-6.26.1" = {
       name = "babel-generator";
       packageName = "babel-generator";
@@ -3784,6 +4486,69 @@ let
         sha1 = "39ff8313b75c8b65dceff1f31d383e0ff2a408a0";
       };
     };
+    "babel-helper-evaluate-path-0.5.0" = {
+      name = "babel-helper-evaluate-path";
+      packageName = "babel-helper-evaluate-path";
+      version = "0.5.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-helper-evaluate-path/-/babel-helper-evaluate-path-0.5.0.tgz";
+        sha512 = "mUh0UhS607bGh5wUMAQfOpt2JX2ThXMtppHRdRU1kL7ZLRWIXxoV2UIV1r2cAeeNeU1M5SB5/RSUgUxrK8yOkA==";
+      };
+    };
+    "babel-helper-flip-expressions-0.4.3" = {
+      name = "babel-helper-flip-expressions";
+      packageName = "babel-helper-flip-expressions";
+      version = "0.4.3";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-helper-flip-expressions/-/babel-helper-flip-expressions-0.4.3.tgz";
+        sha1 = "3696736a128ac18bc25254b5f40a22ceb3c1d3fd";
+      };
+    };
+    "babel-helper-is-nodes-equiv-0.0.1" = {
+      name = "babel-helper-is-nodes-equiv";
+      packageName = "babel-helper-is-nodes-equiv";
+      version = "0.0.1";
+      src = fetchurl {
+        url = "http://registry.npmjs.org/babel-helper-is-nodes-equiv/-/babel-helper-is-nodes-equiv-0.0.1.tgz";
+        sha1 = "34e9b300b1479ddd98ec77ea0bbe9342dfe39684";
+      };
+    };
+    "babel-helper-is-void-0-0.4.3" = {
+      name = "babel-helper-is-void-0";
+      packageName = "babel-helper-is-void-0";
+      version = "0.4.3";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-helper-is-void-0/-/babel-helper-is-void-0-0.4.3.tgz";
+        sha1 = "7d9c01b4561e7b95dbda0f6eee48f5b60e67313e";
+      };
+    };
+    "babel-helper-mark-eval-scopes-0.4.3" = {
+      name = "babel-helper-mark-eval-scopes";
+      packageName = "babel-helper-mark-eval-scopes";
+      version = "0.4.3";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-helper-mark-eval-scopes/-/babel-helper-mark-eval-scopes-0.4.3.tgz";
+        sha1 = "d244a3bef9844872603ffb46e22ce8acdf551562";
+      };
+    };
+    "babel-helper-remove-or-void-0.4.3" = {
+      name = "babel-helper-remove-or-void";
+      packageName = "babel-helper-remove-or-void";
+      version = "0.4.3";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-helper-remove-or-void/-/babel-helper-remove-or-void-0.4.3.tgz";
+        sha1 = "a4f03b40077a0ffe88e45d07010dee241ff5ae60";
+      };
+    };
+    "babel-helper-to-multiple-sequence-expressions-0.5.0" = {
+      name = "babel-helper-to-multiple-sequence-expressions";
+      packageName = "babel-helper-to-multiple-sequence-expressions";
+      version = "0.5.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-helper-to-multiple-sequence-expressions/-/babel-helper-to-multiple-sequence-expressions-0.5.0.tgz";
+        sha512 = "m2CvfDW4+1qfDdsrtf4dwOslQC3yhbgyBFptncp4wvtdrDHqueW7slsYv4gArie056phvQFhT2nRcGS4bnm6mA==";
+      };
+    };
     "babel-helpers-6.24.1" = {
       name = "babel-helpers";
       packageName = "babel-helpers";
@@ -3793,6 +4558,24 @@ let
         sha1 = "3471de9caec388e5c850e597e58a26ddf37602b2";
       };
     };
+    "babel-jest-23.6.0" = {
+      name = "babel-jest";
+      packageName = "babel-jest";
+      version = "23.6.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-jest/-/babel-jest-23.6.0.tgz";
+        sha512 = "lqKGG6LYXYu+DQh/slrQ8nxXQkEkhugdXsU6St7GmhVS7Ilc/22ArwqXNJrf0QaOBjZB0360qZMwXqDYQHXaew==";
+      };
+    };
+    "babel-loader-8.0.4" = {
+      name = "babel-loader";
+      packageName = "babel-loader";
+      version = "8.0.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-loader/-/babel-loader-8.0.4.tgz";
+        sha512 = "fhBhNkUToJcW9nV46v8w87AJOwAJDz84c1CL57n3Stj73FANM/b9TbCUK4YhdOwEyZ+OxhYpdeZDNzSI29Firw==";
+      };
+    };
     "babel-messages-6.23.0" = {
       name = "babel-messages";
       packageName = "babel-messages";
@@ -3802,6 +4585,132 @@ let
         sha1 = "f3cdf4703858035b2a2951c6ec5edf6c62f2630e";
       };
     };
+    "babel-plugin-istanbul-4.1.6" = {
+      name = "babel-plugin-istanbul";
+      packageName = "babel-plugin-istanbul";
+      version = "4.1.6";
+      src = fetchurl {
+        url = "http://registry.npmjs.org/babel-plugin-istanbul/-/babel-plugin-istanbul-4.1.6.tgz";
+        sha512 = "PWP9FQ1AhZhS01T/4qLSKoHGY/xvkZdVBGlKM/HuxxS3+sC66HhTNR7+MpbO/so/cz/wY94MeSWJuP1hXIPfwQ==";
+      };
+    };
+    "babel-plugin-jest-hoist-23.2.0" = {
+      name = "babel-plugin-jest-hoist";
+      packageName = "babel-plugin-jest-hoist";
+      version = "23.2.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-jest-hoist/-/babel-plugin-jest-hoist-23.2.0.tgz";
+        sha1 = "e61fae05a1ca8801aadee57a6d66b8cefaf44167";
+      };
+    };
+    "babel-plugin-minify-builtins-0.5.0" = {
+      name = "babel-plugin-minify-builtins";
+      packageName = "babel-plugin-minify-builtins";
+      version = "0.5.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-minify-builtins/-/babel-plugin-minify-builtins-0.5.0.tgz";
+        sha512 = "wpqbN7Ov5hsNwGdzuzvFcjgRlzbIeVv1gMIlICbPj0xkexnfoIDe7q+AZHMkQmAE/F9R5jkrB6TLfTegImlXag==";
+      };
+    };
+    "babel-plugin-minify-constant-folding-0.5.0" = {
+      name = "babel-plugin-minify-constant-folding";
+      packageName = "babel-plugin-minify-constant-folding";
+      version = "0.5.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-minify-constant-folding/-/babel-plugin-minify-constant-folding-0.5.0.tgz";
+        sha512 = "Vj97CTn/lE9hR1D+jKUeHfNy+m1baNiJ1wJvoGyOBUx7F7kJqDZxr9nCHjO/Ad+irbR3HzR6jABpSSA29QsrXQ==";
+      };
+    };
+    "babel-plugin-minify-dead-code-elimination-0.5.0" = {
+      name = "babel-plugin-minify-dead-code-elimination";
+      packageName = "babel-plugin-minify-dead-code-elimination";
+      version = "0.5.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-minify-dead-code-elimination/-/babel-plugin-minify-dead-code-elimination-0.5.0.tgz";
+        sha512 = "XQteBGXlgEoAKc/BhO6oafUdT4LBa7ARi55mxoyhLHNuA+RlzRmeMAfc31pb/UqU01wBzRc36YqHQzopnkd/6Q==";
+      };
+    };
+    "babel-plugin-minify-flip-comparisons-0.4.3" = {
+      name = "babel-plugin-minify-flip-comparisons";
+      packageName = "babel-plugin-minify-flip-comparisons";
+      version = "0.4.3";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-minify-flip-comparisons/-/babel-plugin-minify-flip-comparisons-0.4.3.tgz";
+        sha1 = "00ca870cb8f13b45c038b3c1ebc0f227293c965a";
+      };
+    };
+    "babel-plugin-minify-guarded-expressions-0.4.3" = {
+      name = "babel-plugin-minify-guarded-expressions";
+      packageName = "babel-plugin-minify-guarded-expressions";
+      version = "0.4.3";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-minify-guarded-expressions/-/babel-plugin-minify-guarded-expressions-0.4.3.tgz";
+        sha1 = "cc709b4453fd21b1f302877444c89f88427ce397";
+      };
+    };
+    "babel-plugin-minify-infinity-0.4.3" = {
+      name = "babel-plugin-minify-infinity";
+      packageName = "babel-plugin-minify-infinity";
+      version = "0.4.3";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-minify-infinity/-/babel-plugin-minify-infinity-0.4.3.tgz";
+        sha1 = "dfb876a1b08a06576384ef3f92e653ba607b39ca";
+      };
+    };
+    "babel-plugin-minify-mangle-names-0.5.0" = {
+      name = "babel-plugin-minify-mangle-names";
+      packageName = "babel-plugin-minify-mangle-names";
+      version = "0.5.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-minify-mangle-names/-/babel-plugin-minify-mangle-names-0.5.0.tgz";
+        sha512 = "3jdNv6hCAw6fsX1p2wBGPfWuK69sfOjfd3zjUXkbq8McbohWy23tpXfy5RnToYWggvqzuMOwlId1PhyHOfgnGw==";
+      };
+    };
+    "babel-plugin-minify-numeric-literals-0.4.3" = {
+      name = "babel-plugin-minify-numeric-literals";
+      packageName = "babel-plugin-minify-numeric-literals";
+      version = "0.4.3";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-minify-numeric-literals/-/babel-plugin-minify-numeric-literals-0.4.3.tgz";
+        sha1 = "8e4fd561c79f7801286ff60e8c5fd9deee93c0bc";
+      };
+    };
+    "babel-plugin-minify-replace-0.5.0" = {
+      name = "babel-plugin-minify-replace";
+      packageName = "babel-plugin-minify-replace";
+      version = "0.5.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-minify-replace/-/babel-plugin-minify-replace-0.5.0.tgz";
+        sha512 = "aXZiaqWDNUbyNNNpWs/8NyST+oU7QTpK7J9zFEFSA0eOmtUNMU3fczlTTTlnCxHmq/jYNFEmkkSG3DDBtW3Y4Q==";
+      };
+    };
+    "babel-plugin-minify-simplify-0.5.0" = {
+      name = "babel-plugin-minify-simplify";
+      packageName = "babel-plugin-minify-simplify";
+      version = "0.5.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-minify-simplify/-/babel-plugin-minify-simplify-0.5.0.tgz";
+        sha512 = "TM01J/YcKZ8XIQd1Z3nF2AdWHoDsarjtZ5fWPDksYZNsoOjQ2UO2EWm824Ym6sp127m44gPlLFiO5KFxU8pA5Q==";
+      };
+    };
+    "babel-plugin-minify-type-constructors-0.4.3" = {
+      name = "babel-plugin-minify-type-constructors";
+      packageName = "babel-plugin-minify-type-constructors";
+      version = "0.4.3";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-minify-type-constructors/-/babel-plugin-minify-type-constructors-0.4.3.tgz";
+        sha1 = "1bc6f15b87f7ab1085d42b330b717657a2156500";
+      };
+    };
+    "babel-plugin-syntax-flow-6.18.0" = {
+      name = "babel-plugin-syntax-flow";
+      packageName = "babel-plugin-syntax-flow";
+      version = "6.18.0";
+      src = fetchurl {
+        url = "http://registry.npmjs.org/babel-plugin-syntax-flow/-/babel-plugin-syntax-flow-6.18.0.tgz";
+        sha1 = "4c3ab20a2af26aa20cd25995c398c4eb70310c8d";
+      };
+    };
     "babel-plugin-syntax-jsx-6.18.0" = {
       name = "babel-plugin-syntax-jsx";
       packageName = "babel-plugin-syntax-jsx";
@@ -3829,6 +4738,51 @@ let
         sha1 = "997bb1f1ab967f682d2b0876fe358d60e765c56d";
       };
     };
+    "babel-plugin-transform-flow-strip-types-6.22.0" = {
+      name = "babel-plugin-transform-flow-strip-types";
+      packageName = "babel-plugin-transform-flow-strip-types";
+      version = "6.22.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-transform-flow-strip-types/-/babel-plugin-transform-flow-strip-types-6.22.0.tgz";
+        sha1 = "84cb672935d43714fdc32bce84568d87441cf7cf";
+      };
+    };
+    "babel-plugin-transform-inline-consecutive-adds-0.4.3" = {
+      name = "babel-plugin-transform-inline-consecutive-adds";
+      packageName = "babel-plugin-transform-inline-consecutive-adds";
+      version = "0.4.3";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-transform-inline-consecutive-adds/-/babel-plugin-transform-inline-consecutive-adds-0.4.3.tgz";
+        sha1 = "323d47a3ea63a83a7ac3c811ae8e6941faf2b0d1";
+      };
+    };
+    "babel-plugin-transform-member-expression-literals-6.9.4" = {
+      name = "babel-plugin-transform-member-expression-literals";
+      packageName = "babel-plugin-transform-member-expression-literals";
+      version = "6.9.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-transform-member-expression-literals/-/babel-plugin-transform-member-expression-literals-6.9.4.tgz";
+        sha1 = "37039c9a0c3313a39495faac2ff3a6b5b9d038bf";
+      };
+    };
+    "babel-plugin-transform-merge-sibling-variables-6.9.4" = {
+      name = "babel-plugin-transform-merge-sibling-variables";
+      packageName = "babel-plugin-transform-merge-sibling-variables";
+      version = "6.9.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-transform-merge-sibling-variables/-/babel-plugin-transform-merge-sibling-variables-6.9.4.tgz";
+        sha1 = "85b422fc3377b449c9d1cde44087203532401dae";
+      };
+    };
+    "babel-plugin-transform-minify-booleans-6.9.4" = {
+      name = "babel-plugin-transform-minify-booleans";
+      packageName = "babel-plugin-transform-minify-booleans";
+      version = "6.9.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-transform-minify-booleans/-/babel-plugin-transform-minify-booleans-6.9.4.tgz";
+        sha1 = "acbb3e56a3555dd23928e4b582d285162dd2b198";
+      };
+    };
     "babel-plugin-transform-object-rest-spread-6.26.0" = {
       name = "babel-plugin-transform-object-rest-spread";
       packageName = "babel-plugin-transform-object-rest-spread";
@@ -3838,6 +4792,15 @@ let
         sha1 = "0f36692d50fef6b7e2d4b3ac1478137a963b7b06";
       };
     };
+    "babel-plugin-transform-property-literals-6.9.4" = {
+      name = "babel-plugin-transform-property-literals";
+      packageName = "babel-plugin-transform-property-literals";
+      version = "6.9.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-transform-property-literals/-/babel-plugin-transform-property-literals-6.9.4.tgz";
+        sha1 = "98c1d21e255736573f93ece54459f6ce24985d39";
+      };
+    };
     "babel-plugin-transform-react-jsx-6.24.1" = {
       name = "babel-plugin-transform-react-jsx";
       packageName = "babel-plugin-transform-react-jsx";
@@ -3847,6 +4810,60 @@ let
         sha1 = "840a028e7df460dfc3a2d29f0c0d91f6376e66a3";
       };
     };
+    "babel-plugin-transform-regexp-constructors-0.4.3" = {
+      name = "babel-plugin-transform-regexp-constructors";
+      packageName = "babel-plugin-transform-regexp-constructors";
+      version = "0.4.3";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-transform-regexp-constructors/-/babel-plugin-transform-regexp-constructors-0.4.3.tgz";
+        sha1 = "58b7775b63afcf33328fae9a5f88fbd4fb0b4965";
+      };
+    };
+    "babel-plugin-transform-remove-console-6.9.4" = {
+      name = "babel-plugin-transform-remove-console";
+      packageName = "babel-plugin-transform-remove-console";
+      version = "6.9.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-transform-remove-console/-/babel-plugin-transform-remove-console-6.9.4.tgz";
+        sha1 = "b980360c067384e24b357a588d807d3c83527780";
+      };
+    };
+    "babel-plugin-transform-remove-debugger-6.9.4" = {
+      name = "babel-plugin-transform-remove-debugger";
+      packageName = "babel-plugin-transform-remove-debugger";
+      version = "6.9.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-transform-remove-debugger/-/babel-plugin-transform-remove-debugger-6.9.4.tgz";
+        sha1 = "42b727631c97978e1eb2d199a7aec84a18339ef2";
+      };
+    };
+    "babel-plugin-transform-remove-undefined-0.5.0" = {
+      name = "babel-plugin-transform-remove-undefined";
+      packageName = "babel-plugin-transform-remove-undefined";
+      version = "0.5.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-transform-remove-undefined/-/babel-plugin-transform-remove-undefined-0.5.0.tgz";
+        sha512 = "+M7fJYFaEE/M9CXa0/IRkDbiV3wRELzA1kKQFCJ4ifhrzLKn/9VCCgj9OFmYWwBd8IB48YdgPkHYtbYq+4vtHQ==";
+      };
+    };
+    "babel-plugin-transform-simplify-comparison-operators-6.9.4" = {
+      name = "babel-plugin-transform-simplify-comparison-operators";
+      packageName = "babel-plugin-transform-simplify-comparison-operators";
+      version = "6.9.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-transform-simplify-comparison-operators/-/babel-plugin-transform-simplify-comparison-operators-6.9.4.tgz";
+        sha1 = "f62afe096cab0e1f68a2d753fdf283888471ceb9";
+      };
+    };
+    "babel-plugin-transform-undefined-to-void-6.9.4" = {
+      name = "babel-plugin-transform-undefined-to-void";
+      packageName = "babel-plugin-transform-undefined-to-void";
+      version = "6.9.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-plugin-transform-undefined-to-void/-/babel-plugin-transform-undefined-to-void-6.9.4.tgz";
+        sha1 = "be241ca81404030678b748717322b89d0c8fe280";
+      };
+    };
     "babel-polyfill-6.16.0" = {
       name = "babel-polyfill";
       packageName = "babel-polyfill";
@@ -3865,6 +4882,24 @@ let
         sha1 = "379937abc67d7895970adc621f284cd966cf2153";
       };
     };
+    "babel-preset-jest-23.2.0" = {
+      name = "babel-preset-jest";
+      packageName = "babel-preset-jest";
+      version = "23.2.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-preset-jest/-/babel-preset-jest-23.2.0.tgz";
+        sha1 = "8ec7a03a138f001a1a8fb1e8113652bf1a55da46";
+      };
+    };
+    "babel-preset-minify-0.5.0" = {
+      name = "babel-preset-minify";
+      packageName = "babel-preset-minify";
+      version = "0.5.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/babel-preset-minify/-/babel-preset-minify-0.5.0.tgz";
+        sha512 = "xj1s9Mon+RFubH569vrGCayA9Fm2GMsCgDRm1Jb8SgctOB7KFcrVc2o8K3YHUyMz+SWP8aea75BoS8YfsXXuiA==";
+      };
+    };
     "babel-register-6.26.0" = {
       name = "babel-register";
       packageName = "babel-register";
@@ -4302,7 +5337,7 @@ let
       packageName = "bin-version";
       version = "2.0.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/bin-version/-/bin-version-2.0.0.tgz";
+        url = "http://registry.npmjs.org/bin-version/-/bin-version-2.0.0.tgz";
         sha1 = "2cc95d83b522bdef2e99978e76aeb5491c8114ff";
       };
     };
@@ -4311,7 +5346,7 @@ let
       packageName = "bin-version-check";
       version = "3.0.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/bin-version-check/-/bin-version-check-3.0.0.tgz";
+        url = "http://registry.npmjs.org/bin-version-check/-/bin-version-check-3.0.0.tgz";
         sha1 = "e24ebfa6b63cb0387c5fc174f86e5cc812ca7cc9";
       };
     };
@@ -4612,13 +5647,13 @@ let
         sha1 = "f72d760be09b7f76d08ed8fae98b289a8d05fab3";
       };
     };
-    "bluebird-3.5.2" = {
+    "bluebird-3.5.3" = {
       name = "bluebird";
       packageName = "bluebird";
-      version = "3.5.2";
+      version = "3.5.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/bluebird/-/bluebird-3.5.2.tgz";
-        sha512 = "dhHTWMI7kMx5whMQntl7Vr9C6BvV10lFXDAasnqnrMYhXVCzzk6IO9Fo2L75jXHT07WrOngL1WDXOp+yYS91Yg==";
+        url = "https://registry.npmjs.org/bluebird/-/bluebird-3.5.3.tgz";
+        sha512 = "/qKPUQlaW1OyR51WeCPBvRnAlnZFUJkCSG5HzGnuIqhgyJtF+T94lFnn33eiazjRm2LAHVy2guNnaq48X9SJuw==";
       };
     };
     "blueimp-md5-2.10.0" = {
@@ -5053,6 +6088,15 @@ let
         sha512 = "Z942RysHXmJrhqk88FmKBVq/v5tqmSkDz7p54G/MGyjMnCFFnC79XWNbg+Vta8W6Wb2qtSZTSxIGkJrRpCFEiA==";
       };
     };
+    "browserslist-4.3.4" = {
+      name = "browserslist";
+      packageName = "browserslist";
+      version = "4.3.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/browserslist/-/browserslist-4.3.4.tgz";
+        sha512 = "u5iz+ijIMUlmV8blX82VGFrB9ecnUg5qEt55CMZ/YJEhha+d8qpBfOFuutJ6F/VKRXjZoD33b6uvarpPxcl3RA==";
+      };
+    };
     "bson-0.1.8" = {
       name = "bson";
       packageName = "bson";
@@ -5215,6 +6259,15 @@ let
         sha1 = "a9fb806ce8145d5428510ce72f278bb363a638bf";
       };
     };
+    "buffer-queue-1.0.0" = {
+      name = "buffer-queue";
+      packageName = "buffer-queue";
+      version = "1.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/buffer-queue/-/buffer-queue-1.0.0.tgz";
+        sha1 = "3d253fe2f0ab70e851d728712e8cd6f914a8c002";
+      };
+    };
     "buffer-xor-1.0.3" = {
       name = "buffer-xor";
       packageName = "buffer-xor";
@@ -5305,6 +6358,15 @@ let
         sha1 = "270f076c5a72c02f5b65a47df94c5fe3a278892f";
       };
     };
+    "builtin-modules-2.0.0" = {
+      name = "builtin-modules";
+      packageName = "builtin-modules";
+      version = "2.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/builtin-modules/-/builtin-modules-2.0.0.tgz";
+        sha512 = "3U5kUA5VPsRUA3nofm/BXX7GVHKfxz0hOBAPxXrIvHzlDRkQVqEn6yi8QJegxl4LzOHLdvb7XF5dVawa/VVYBg==";
+      };
+    };
     "builtin-status-codes-3.0.0" = {
       name = "builtin-status-codes";
       packageName = "builtin-status-codes";
@@ -5512,13 +6574,22 @@ let
         sha1 = "0d808801b6342ad33c91df9d0b44dc09b91e5c3d";
       };
     };
-    "cached-path-relative-1.0.1" = {
+    "cacheable-request-5.1.0" = {
+      name = "cacheable-request";
+      packageName = "cacheable-request";
+      version = "5.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/cacheable-request/-/cacheable-request-5.1.0.tgz";
+        sha512 = "UCdjX4N/QjymZGpKY7hW4VJsxsVJM+drIiCxPa9aTvFQN5sL2+kJCYyeys8f2W0dJ0sU6Et54Ovl0sAmCpHHsA==";
+      };
+    };
+    "cached-path-relative-1.0.2" = {
       name = "cached-path-relative";
       packageName = "cached-path-relative";
-      version = "1.0.1";
+      version = "1.0.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/cached-path-relative/-/cached-path-relative-1.0.1.tgz";
-        sha1 = "d09c4b52800aa4c078e2dd81a869aac90d2e54e7";
+        url = "https://registry.npmjs.org/cached-path-relative/-/cached-path-relative-1.0.2.tgz";
+        sha512 = "5r2GqsoEb4qMTTN9J+WzXfjov+hjxT+j3u5K+kIVNIwAd99DLCJE9pBIMP1qVeybV6JiijL385Oz0DcYxfbOIg==";
       };
     };
     "call-me-maybe-1.0.1" = {
@@ -5656,6 +6727,15 @@ let
         sha1 = "d545635be1e33c542649c69173e5de6acfae34dd";
       };
     };
+    "camelcase-5.0.0" = {
+      name = "camelcase";
+      packageName = "camelcase";
+      version = "5.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/camelcase/-/camelcase-5.0.0.tgz";
+        sha512 = "faqwZqnWxbxn+F1d399ygeamQNy3lPp/H9H6rNrqYh4FSVCtcY+3cub1MxA8o9mDd55mM8Aghuu/kuyYA6VTsA==";
+      };
+    };
     "camelcase-keys-2.1.0" = {
       name = "camelcase-keys";
       packageName = "camelcase-keys";
@@ -5674,6 +6754,15 @@ let
         sha1 = "a2aa5fb1af688758259c32c141426d78923b9b77";
       };
     };
+    "caniuse-lite-1.0.30000907" = {
+      name = "caniuse-lite";
+      packageName = "caniuse-lite";
+      version = "1.0.30000907";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/caniuse-lite/-/caniuse-lite-1.0.30000907.tgz";
+        sha512 = "No5sQ/OB2Nmka8MNOOM6nJx+Hxt6MQ6h7t7kgJFu9oTuwjykyKRSBP/+i/QAyFHxeHB+ddE0Da1CG5ihx9oehQ==";
+      };
+    };
     "capture-stack-trace-1.0.1" = {
       name = "capture-stack-trace";
       packageName = "capture-stack-trace";
@@ -5998,6 +7087,15 @@ let
         sha1 = "4b9f53a81b27e4d5dac31c0ffd0cfa03cc6830db";
       };
     };
+    "cherow-1.6.8" = {
+      name = "cherow";
+      packageName = "cherow";
+      version = "1.6.8";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/cherow/-/cherow-1.6.8.tgz";
+        sha512 = "if2GIw3fjE/KnFD5tddg4YJn2zveJ7PU7VcTrVHvsAdqJClB5555AsSti53XHjUyaOEiqq9x3/lZZVJ8s+VPkA==";
+      };
+    };
     "chloride-2.2.10" = {
       name = "chloride";
       packageName = "chloride";
@@ -6741,7 +7839,7 @@ let
       packageName = "colors";
       version = "0.5.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/colors/-/colors-0.5.1.tgz";
+        url = "http://registry.npmjs.org/colors/-/colors-0.5.1.tgz";
         sha1 = "7d0023eaeb154e8ee9fce75dcb923d0ed1667774";
       };
     };
@@ -6750,7 +7848,7 @@ let
       packageName = "colors";
       version = "0.6.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/colors/-/colors-0.6.2.tgz";
+        url = "http://registry.npmjs.org/colors/-/colors-0.6.2.tgz";
         sha1 = "2423fe6678ac0c5dae8852e5d0e5be08c997abcc";
       };
     };
@@ -6759,7 +7857,7 @@ let
       packageName = "colors";
       version = "1.0.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/colors/-/colors-1.0.3.tgz";
+        url = "http://registry.npmjs.org/colors/-/colors-1.0.3.tgz";
         sha1 = "0433f44d809680fdeb60ed260f1b0c262e82a40b";
       };
     };
@@ -6768,7 +7866,7 @@ let
       packageName = "colors";
       version = "1.1.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/colors/-/colors-1.1.2.tgz";
+        url = "http://registry.npmjs.org/colors/-/colors-1.1.2.tgz";
         sha1 = "168a4701756b6a7f51a12ce0c97bfa28c084ed63";
       };
     };
@@ -8006,13 +9104,13 @@ let
         sha512 = "6e5vDdrXZD+t5v0L8CrurPeybg4Fmf+FCSYxXKYVAqLUtyCSbuyqE059d0kDthTNRzKVjL7QMgNpEUlsoYH3iQ==";
       };
     };
-    "cosmiconfig-5.0.6" = {
+    "cosmiconfig-5.0.7" = {
       name = "cosmiconfig";
       packageName = "cosmiconfig";
-      version = "5.0.6";
+      version = "5.0.7";
       src = fetchurl {
-        url = "https://registry.npmjs.org/cosmiconfig/-/cosmiconfig-5.0.6.tgz";
-        sha512 = "6DWfizHriCrFWURP1/qyhsiFvYdlJzbCzmtFWh744+KyWsJo5+kPzUZZaMRSSItoYc0pxFX7gEO7ZC1/gN/7AQ==";
+        url = "https://registry.npmjs.org/cosmiconfig/-/cosmiconfig-5.0.7.tgz";
+        sha512 = "PcLqxTKiDmNT6pSpy4N6KtuPwb53W+2tzNvwOZw0WH9N6O0vLIBq0x8aj8Oj75ere4YcGi48bDFCL+3fRJdlNA==";
       };
     };
     "couch-login-0.1.20" = {
@@ -8141,6 +9239,15 @@ let
         sha512 = "j7zMFLrcSta53xqOvETUt8ge+PM14GtF47gEGJJeVlM6qP24/eWHSgtiWiEiKBR2sHS8xZaBQZq4D7vFXg8dcQ==";
       };
     };
+    "cross-env-5.2.0" = {
+      name = "cross-env";
+      packageName = "cross-env";
+      version = "5.2.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/cross-env/-/cross-env-5.2.0.tgz";
+        sha512 = "jtdNFfFW1hB7sMhr/H6rW1Z45LFqyI431m3qU6bFXcQ3Eh7LtBuG3h74o7ohHZ3crrRkkqHlo4jYHFPcjroANg==";
+      };
+    };
     "cross-fetch-2.2.2" = {
       name = "cross-fetch";
       packageName = "cross-fetch";
@@ -8843,6 +9950,15 @@ let
         sha512 = "jyCETtSl3VMZMWeRo7iY1FL19ges1t55hMo5yaam4Jrsm5EPL89UQkoQRyiI+Yf4k8r2ZpdngkV8hr1lIdjb3Q==";
       };
     };
+    "death-1.1.0" = {
+      name = "death";
+      packageName = "death";
+      version = "1.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/death/-/death-1.1.0.tgz";
+        sha1 = "01aa9c401edd92750514470b8266390c66c67318";
+      };
+    };
     "debounce-1.1.0" = {
       name = "debounce";
       packageName = "debounce";
@@ -9185,15 +10301,6 @@ let
         sha512 = "Q89Z26KAfA3lpPGhbF6XMfYAm3jIV3avViy6KOJ2JLzFbeWHOvPQUu5aSJIWXap3gDZC2y1eF5HXEPI2wGqgvw==";
       };
     };
-    "deepmerge-2.1.1" = {
-      name = "deepmerge";
-      packageName = "deepmerge";
-      version = "2.1.1";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/deepmerge/-/deepmerge-2.1.1.tgz";
-        sha512 = "urQxA1smbLZ2cBbXbaYObM1dJ82aJ2H57A1C/Kklfh/ZN1bgH4G/n5KWhdNfOK11W98gqZfyYj7W4frJJRwA2w==";
-      };
-    };
     "deepmerge-2.2.1" = {
       name = "deepmerge";
       packageName = "deepmerge";
@@ -9239,6 +10346,15 @@ let
         sha1 = "c656051e9817d9ff08ed881477f3fe4019f3ef7d";
       };
     };
+    "defer-to-connect-1.0.1" = {
+      name = "defer-to-connect";
+      packageName = "defer-to-connect";
+      version = "1.0.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/defer-to-connect/-/defer-to-connect-1.0.1.tgz";
+        sha512 = "2e0FJesseUqQj671gvZWfUyxpnFx/5n4xleamlpCD3U6Fm5dh5qzmmLNxNhtmHF06+SYVHH8QU6FACffYTnj0Q==";
+      };
+    };
     "deferred-leveldown-0.2.0" = {
       name = "deferred-leveldown";
       packageName = "deferred-leveldown";
@@ -9329,13 +10445,13 @@ let
         sha1 = "fcf490a37ece266464d9cc431ab98c5819ced095";
       };
     };
-    "del-2.2.2" = {
+    "del-3.0.0" = {
       name = "del";
       packageName = "del";
-      version = "2.2.2";
+      version = "3.0.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/del/-/del-2.2.2.tgz";
-        sha1 = "c12c981d067846c84bcaf862cff930d907ffd1a8";
+        url = "https://registry.npmjs.org/del/-/del-3.0.0.tgz";
+        sha1 = "53ecf699ffcbcb39637691ab13baf160819766e5";
       };
     };
     "delayed-stream-0.0.5" = {
@@ -9707,13 +10823,13 @@ let
         sha1 = "57ddacb47324ae5f58d2cc0da886db4ce9eeb718";
       };
     };
-    "dispensary-0.22.0" = {
+    "dispensary-0.26.0" = {
       name = "dispensary";
       packageName = "dispensary";
-      version = "0.22.0";
+      version = "0.26.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/dispensary/-/dispensary-0.22.0.tgz";
-        sha512 = "iwpIOQ4T+fJ55PAPE4G7b8MubUN8dGyZa78VrD6A+XqSnqs844npoGvpwSEETnn064JaaS4gqLcgAfTGR4p2+g==";
+        url = "https://registry.npmjs.org/dispensary/-/dispensary-0.26.0.tgz";
+        sha512 = "Cw0N6Hf8/y4vH9/NvDPGLd2+Mve9xs+41+sULJ4ODHuhZ+9CnJ2eMl2ju2udL/UACY0Vcxw3TzyoDRBNaU/0DQ==";
       };
     };
     "diveSync-0.3.0" = {
@@ -10058,6 +11174,15 @@ let
         sha1 = "63537f977f99266a30eb8a2a2fbd1f20b8000f7a";
       };
     };
+    "download-7.1.0" = {
+      name = "download";
+      packageName = "download";
+      version = "7.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/download/-/download-7.1.0.tgz";
+        sha512 = "xqnBTVd/E+GxJVrX5/eUJiLYjCGPwMpdL+jGhGU57BvtcA7wwhtHVbXBeUk51kOpW3S7Jn3BQbN9Q1R1Km2qDQ==";
+      };
+    };
     "download-git-repo-1.1.0" = {
       name = "download-git-repo";
       packageName = "download-git-repo";
@@ -10319,6 +11444,15 @@ let
         sha512 = "0xy4A/twfrRCnkhfk8ErDi5DqdAsAqeGxht4xkCUrsvhhbQNs7E+4jV0CN7+NKIY0aHE72+XvqtBIXzD31ZbXQ==";
       };
     };
+    "electron-to-chromium-1.3.84" = {
+      name = "electron-to-chromium";
+      packageName = "electron-to-chromium";
+      version = "1.3.84";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/electron-to-chromium/-/electron-to-chromium-1.3.84.tgz";
+        sha512 = "IYhbzJYOopiTaNWMBp7RjbecUBsbnbDneOP86f3qvS0G0xfzwNSvMJpTrvi5/Y1gU7tg2NAgeg8a8rCYvW9Whw==";
+      };
+    };
     "elegant-spinner-1.0.1" = {
       name = "elegant-spinner";
       packageName = "elegant-spinner";
@@ -10541,7 +11675,7 @@ let
       packageName = "engine.io-client";
       version = "1.3.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/engine.io-client/-/engine.io-client-1.3.1.tgz";
+        url = "http://registry.npmjs.org/engine.io-client/-/engine.io-client-1.3.1.tgz";
         sha1 = "1c5a65d5c5af6d04b44c22c3dbcd95c39ed1c989";
       };
     };
@@ -10559,7 +11693,7 @@ let
       packageName = "engine.io-client";
       version = "3.2.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/engine.io-client/-/engine.io-client-3.2.1.tgz";
+        url = "http://registry.npmjs.org/engine.io-client/-/engine.io-client-3.2.1.tgz";
         sha512 = "y5AbkytWeM4jQr7m/koQLc5AxpRKC1hEVUb/s1FUAWEJq5AzJJ4NLvzuKPuxtDi5Mq755WuDvZ6Iv2rXj4PTzw==";
       };
     };
@@ -11013,13 +12147,13 @@ let
         sha512 = "D5nG2rErquLUstgUaxJlWB5+gu+U/3VDY0fk/Iuq8y9CUFy/7Y6oF4N2cR1tV8knzQvciIbfqfohd359xTLIKQ==";
       };
     };
-    "eslint-5.8.0" = {
+    "eslint-5.9.0" = {
       name = "eslint";
       packageName = "eslint";
-      version = "5.8.0";
+      version = "5.9.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/eslint/-/eslint-5.8.0.tgz";
-        sha512 = "Zok6Bru3y2JprqTNm14mgQ15YQu/SMDkWdnmHfFg770DIUlmMFd/gqqzCHekxzjHZJxXv3tmTpH0C1icaYJsRQ==";
+        url = "https://registry.npmjs.org/eslint/-/eslint-5.9.0.tgz";
+        sha512 = "g4KWpPdqN0nth+goDNICNXGfJF7nNnepthp46CAlJoJtC5K/cLu3NgCM3AHu1CkJ5Hzt9V0Y0PBAO6Ay/gGb+w==";
       };
     };
     "eslint-plugin-no-unsafe-innerhtml-1.0.16" = {
@@ -11031,6 +12165,15 @@ let
         sha1 = "7d02878c8e9bf7916b88836d5ac122b42f151932";
       };
     };
+    "eslint-scope-3.7.1" = {
+      name = "eslint-scope";
+      packageName = "eslint-scope";
+      version = "3.7.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/eslint-scope/-/eslint-scope-3.7.1.tgz";
+        sha1 = "3d63c3edfda02e06e01a452ad88caacc7cdcb6e8";
+      };
+    };
     "eslint-scope-4.0.0" = {
       name = "eslint-scope";
       packageName = "eslint-scope";
@@ -11175,6 +12318,15 @@ let
         sha1 = "0dee3fed31fcd469618ce7342099fc1afa0bdb13";
       };
     };
+    "estree-walker-0.5.2" = {
+      name = "estree-walker";
+      packageName = "estree-walker";
+      version = "0.5.2";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/estree-walker/-/estree-walker-0.5.2.tgz";
+        sha512 = "XpCnW/AE10ws/kDAs37cngSkvgIR8aN3G0MS85m7dUpuK2EREo9VJ00uvw6Dg/hXEpfsE1I1TvJOJr+Z+TL+ig==";
+      };
+    };
     "esutils-2.0.2" = {
       name = "esutils";
       packageName = "esutils";
@@ -11724,6 +12876,15 @@ let
         sha1 = "07e4418737cb1f513c32c6ea48d8b8c8e0471abb";
       };
     };
+    "ext-name-5.0.0" = {
+      name = "ext-name";
+      packageName = "ext-name";
+      version = "5.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/ext-name/-/ext-name-5.0.0.tgz";
+        sha512 = "yblEwXAbGv1VQDmow7s38W77hzAgJAO50ztBLMcUyUBfxv1HC+LGwtiEN+Co6LtlqT/5uwVOxsD4TNIilWhwdQ==";
+      };
+    };
     "extend-1.2.1" = {
       name = "extend";
       packageName = "extend";
@@ -12201,6 +13362,15 @@ let
         sha1 = "257a078384d1db8087bc449d107d52a52672b9e9";
       };
     };
+    "file-type-4.4.0" = {
+      name = "file-type";
+      packageName = "file-type";
+      version = "4.4.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/file-type/-/file-type-4.4.0.tgz";
+        sha1 = "1b600e5fca1fbdc6e80c0a70c71c8dba5f7906c5";
+      };
+    };
     "file-type-5.2.0" = {
       name = "file-type";
       packageName = "file-type";
@@ -12219,6 +13389,15 @@ let
         sha512 = "YPcTBDV+2Tm0VqjybVd32MHdlEGAtuxS3VAYsumFokDSMG+ROT5wawGlnHDoz7bfMcMDt9hxuXvXwoKUx2fkOg==";
       };
     };
+    "file-type-8.1.0" = {
+      name = "file-type";
+      packageName = "file-type";
+      version = "8.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/file-type/-/file-type-8.1.0.tgz";
+        sha512 = "qyQ0pzAy78gVoJsmYeNgl8uH8yKhr1lVhW7JbzJmnlRi0I4R2eEDEJZVKG8agpDnLpacwNbDhLNG/LMdxHD2YQ==";
+      };
+    };
     "file-uri-to-path-1.0.0" = {
       name = "file-uri-to-path";
       packageName = "file-uri-to-path";
@@ -12422,7 +13601,7 @@ let
       packageName = "find-versions";
       version = "2.0.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/find-versions/-/find-versions-2.0.0.tgz";
+        url = "http://registry.npmjs.org/find-versions/-/find-versions-2.0.0.tgz";
         sha1 = "2ad90d490f6828c1aa40292cf709ac3318210c3c";
       };
     };
@@ -12525,13 +13704,13 @@ let
         sha1 = "4e79ae9b2eb38bf86b3bb56bf3e0a56aa5fcabd7";
       };
     };
-    "flat-cache-1.3.0" = {
+    "flat-cache-1.3.2" = {
       name = "flat-cache";
       packageName = "flat-cache";
-      version = "1.3.0";
+      version = "1.3.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/flat-cache/-/flat-cache-1.3.0.tgz";
-        sha1 = "d3030b32b38154f4e3b7e9c709f490f7ef97c481";
+        url = "https://registry.npmjs.org/flat-cache/-/flat-cache-1.3.2.tgz";
+        sha512 = "KByBY8c98sLUAGpnmjEdWTrtrLZRtZdwds+kAL/ciFXTCb7AZgqKsAnVnYFQj1hxepwO8JKN/8AsRWwLq+RK0A==";
       };
     };
     "flat-tree-1.6.0" = {
@@ -12588,6 +13767,15 @@ let
         sha1 = "dae46a9d78fbe25292258cc1e780a41d95c03782";
       };
     };
+    "flow-bin-0.85.0" = {
+      name = "flow-bin";
+      packageName = "flow-bin";
+      version = "0.85.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/flow-bin/-/flow-bin-0.85.0.tgz";
+        sha512 = "ougBA2q6Rn9sZrjZQ9r5pTFxCotlGouySpD2yRIuq5AYwwfIT8HHhVMeSwrN5qJayjHINLJyrnsSkkPCZyfMrQ==";
+      };
+    };
     "fluent-ffmpeg-2.1.2" = {
       name = "fluent-ffmpeg";
       packageName = "fluent-ffmpeg";
@@ -13034,7 +14222,7 @@ let
       packageName = "fs-extra";
       version = "0.24.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/fs-extra/-/fs-extra-0.24.0.tgz";
+        url = "http://registry.npmjs.org/fs-extra/-/fs-extra-0.24.0.tgz";
         sha1 = "d4e4342a96675cb7846633a6099249332b539952";
       };
     };
@@ -13043,7 +14231,7 @@ let
       packageName = "fs-extra";
       version = "0.26.7";
       src = fetchurl {
-        url = "https://registry.npmjs.org/fs-extra/-/fs-extra-0.26.7.tgz";
+        url = "http://registry.npmjs.org/fs-extra/-/fs-extra-0.26.7.tgz";
         sha1 = "9ae1fdd94897798edab76d0918cf42d0c3184fa9";
       };
     };
@@ -13052,7 +14240,7 @@ let
       packageName = "fs-extra";
       version = "0.30.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/fs-extra/-/fs-extra-0.30.0.tgz";
+        url = "http://registry.npmjs.org/fs-extra/-/fs-extra-0.30.0.tgz";
         sha1 = "f233ffcc08d4da7d432daa449776989db1df93f0";
       };
     };
@@ -13061,7 +14249,7 @@ let
       packageName = "fs-extra";
       version = "0.6.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/fs-extra/-/fs-extra-0.6.4.tgz";
+        url = "http://registry.npmjs.org/fs-extra/-/fs-extra-0.6.4.tgz";
         sha1 = "f46f0c75b7841f8d200b3348cd4d691d5a099d15";
       };
     };
@@ -13070,7 +14258,7 @@ let
       packageName = "fs-extra";
       version = "1.0.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/fs-extra/-/fs-extra-1.0.0.tgz";
+        url = "http://registry.npmjs.org/fs-extra/-/fs-extra-1.0.0.tgz";
         sha1 = "cd3ce5f7e7cb6145883fcae3191e9877f8587950";
       };
     };
@@ -13110,13 +14298,13 @@ let
         sha512 = "GnyIkKhhzXZUWFCaJzvyDLEEgDkPfb4/TPvJCJVuS8MWZgoSsErf++QpiAlDnKFcqhRlm+tIOcencCjyJE6ZCA==";
       };
     };
-    "fs-extra-7.0.0" = {
+    "fs-extra-7.0.1" = {
       name = "fs-extra";
       packageName = "fs-extra";
-      version = "7.0.0";
+      version = "7.0.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/fs-extra/-/fs-extra-7.0.0.tgz";
-        sha512 = "EglNDLRpmaTWiD/qraZn6HREAEAHJcJOmxNEYwq6xeMKnVMAy3GUcFB+wXt2C6k4CNvB/mP1y/U3dzvKKj5OtQ==";
+        url = "https://registry.npmjs.org/fs-extra/-/fs-extra-7.0.1.tgz";
+        sha512 = "YJDaCJZEnBmcbw13fvdAM9AwNOJwOzrE4pqMqBq5nFiEqXUqHwlK4B+3pUw6JNvfSPtX05xFHtYy/1ni01eGCw==";
       };
     };
     "fs-minipass-1.2.5" = {
@@ -13547,7 +14735,7 @@ let
       packageName = "gettext-parser";
       version = "1.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/gettext-parser/-/gettext-parser-1.1.0.tgz";
+        url = "http://registry.npmjs.org/gettext-parser/-/gettext-parser-1.1.0.tgz";
         sha1 = "2c5a6638d893934b9b55037d0ad82cb7004b2679";
       };
     };
@@ -13876,6 +15064,15 @@ let
         sha512 = "sKzpEkf11GpOFuw0Zzjzmt4B4UZwjOcG757PPvrfhxcLFbq0wpsgpOqxpxtxFiCG4DtG93M6XRVbF2oGdev7bg==";
       };
     };
+    "global-modules-path-2.3.0" = {
+      name = "global-modules-path";
+      packageName = "global-modules-path";
+      version = "2.3.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/global-modules-path/-/global-modules-path-2.3.0.tgz";
+        sha512 = "HchvMJNYh9dGSCy8pOQ2O8u/hoXaL+0XhnrwH0RyLiSXMMTl9W3N6KUU73+JFOg5PGjtzl6VZzUQsnrpm7Szag==";
+      };
+    };
     "global-paths-1.0.0" = {
       name = "global-paths";
       packageName = "global-paths";
@@ -13939,13 +15136,13 @@ let
         sha1 = "080f54549ec1b82a6c60e631fc82e1211dbe95f8";
       };
     };
-    "globby-5.0.0" = {
+    "globby-6.1.0" = {
       name = "globby";
       packageName = "globby";
-      version = "5.0.0";
+      version = "6.1.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/globby/-/globby-5.0.0.tgz";
-        sha1 = "ebd84667ca0dbb330b99bcfc68eac2bc54370e0d";
+        url = "https://registry.npmjs.org/globby/-/globby-6.1.0.tgz";
+        sha1 = "f5a6d70e8395e21c858fb0489d64df02424d506c";
       };
     };
     "globby-8.0.1" = {
@@ -13984,6 +15181,15 @@ let
         sha1 = "d53b30cdf9313dffb7dc9a0d477096aa6d145c50";
       };
     };
+    "google-closure-compiler-js-20170910.0.1" = {
+      name = "google-closure-compiler-js";
+      packageName = "google-closure-compiler-js";
+      version = "20170910.0.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/google-closure-compiler-js/-/google-closure-compiler-js-20170910.0.1.tgz";
+        sha512 = "Vric7QFWxzHFxITZ10bmlG1H/5rhODb7hJuWyKWMD8GflpQzRmbMVqkFp3fKvN+U9tPwZItGVhkiOR+84PX3ew==";
+      };
+    };
     "got-1.2.2" = {
       name = "got";
       packageName = "got";
@@ -14020,6 +15226,15 @@ let
         sha512 = "qjUJ5U/hawxosMryILofZCkm3C84PLJS/0grRIpjAwu+Lkxxj5cxeCU25BG0/3mDSpXKTyZr8oh8wIgLaH0QCw==";
       };
     };
+    "got-9.3.2" = {
+      name = "got";
+      packageName = "got";
+      version = "9.3.2";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/got/-/got-9.3.2.tgz";
+        sha512 = "OyKOUg71IKvwb8Uj0KP6EN3+qVVvXmYsFznU1fnwUnKtDbZnwSlAi7muNlu4HhBfN9dImtlgg9e7H0g5qVdaeQ==";
+      };
+    };
     "graceful-fs-1.2.3" = {
       name = "graceful-fs";
       packageName = "graceful-fs";
@@ -14182,13 +15397,13 @@ let
         sha512 = "7Qh3TzZS3hwZpJbTNfTHXBM6UbzV7DMik9Mc95Rz76yTAs7Wr83xBFsH4Ap1NWlqBgANfO3cLLI4YomDJmO5SA==";
       };
     };
-    "graphql-extensions-0.2.1" = {
+    "graphql-extensions-0.3.0" = {
       name = "graphql-extensions";
       packageName = "graphql-extensions";
-      version = "0.2.1";
+      version = "0.3.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/graphql-extensions/-/graphql-extensions-0.2.1.tgz";
-        sha512 = "/1FTPSWSffDjlRyMAV2UwQhojLmca9aQD0ieo1IYiqT5SE+uOWi4r83QF1CoER0sREIsH3s+nTmdH3cvQVG3MA==";
+        url = "https://registry.npmjs.org/graphql-extensions/-/graphql-extensions-0.3.0.tgz";
+        sha512 = "+ppyD7g6acX0y2vj5hm5mRlCBngdHD2dE1jW7abAG4PAWg275TrczA3WXUxB6P9Q4uw0XA886Q+aagI5EmTSaA==";
       };
     };
     "graphql-import-0.4.5" = {
@@ -14254,15 +15469,6 @@ let
         sha512 = "C8+EqwNCiQxUhbrWEokxN16oINAkhIDBzEpKHXeatBRaAyMczXm0J6HMaMSKOuQmk7P1PbDHIVW3FVZwXF2WJQ==";
       };
     };
-    "graphql-subscriptions-0.5.8" = {
-      name = "graphql-subscriptions";
-      packageName = "graphql-subscriptions";
-      version = "0.5.8";
-      src = fetchurl {
-        url = "http://registry.npmjs.org/graphql-subscriptions/-/graphql-subscriptions-0.5.8.tgz";
-        sha512 = "0CaZnXKBw2pwnIbvmVckby5Ge5e2ecmjofhYCdyeACbCly2j3WXDP/pl+s+Dqd2GQFC7y99NB+53jrt55CKxYQ==";
-      };
-    };
     "graphql-subscriptions-1.0.0" = {
       name = "graphql-subscriptions";
       packageName = "graphql-subscriptions";
@@ -14281,13 +15487,13 @@ let
         sha512 = "9FD6cw976TLLf9WYIUPCaaTpniawIjHWZSwIRZSjrfufJamcXbVVYfN2TWvJYbw0Xf2JjYbl1/f2+wDnBVw3/w==";
       };
     };
-    "graphql-tools-3.1.1" = {
+    "graphql-tools-4.0.3" = {
       name = "graphql-tools";
       packageName = "graphql-tools";
-      version = "3.1.1";
+      version = "4.0.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/graphql-tools/-/graphql-tools-3.1.1.tgz";
-        sha512 = "yHvPkweUB0+Q/GWH5wIG60bpt8CTwBklCSzQdEHmRUgAdEQKxw+9B7zB3dG7wB3Ym7M7lfrS4Ej+jtDZfA2UXg==";
+        url = "https://registry.npmjs.org/graphql-tools/-/graphql-tools-4.0.3.tgz";
+        sha512 = "NNZM0WSnVLX1zIMUxu7SjzLZ4prCp15N5L2T2ro02OVyydZ0fuCnZYRnx/yK9xjGWbZA0Q58yEO//Bv/psJWrg==";
       };
     };
     "graphql-type-json-0.2.1" = {
@@ -14466,7 +15672,7 @@ let
       packageName = "har-validator";
       version = "2.0.6";
       src = fetchurl {
-        url = "https://registry.npmjs.org/har-validator/-/har-validator-2.0.6.tgz";
+        url = "http://registry.npmjs.org/har-validator/-/har-validator-2.0.6.tgz";
         sha1 = "cdcbc08188265ad119b6a5a7c8ab70eecfb5d27d";
       };
     };
@@ -14965,13 +16171,13 @@ let
         sha512 = "Alr4ZQgoMlnere5FZJsIyfIjORBqZll5POhDsF4q64dPuJR6rNxXdDxtHSQq8OXRurhmx+PWYEE8bXRROY8h0w==";
       };
     };
-    "hoek-6.0.1" = {
+    "hoek-6.0.2" = {
       name = "hoek";
       packageName = "hoek";
-      version = "6.0.1";
+      version = "6.0.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/hoek/-/hoek-6.0.1.tgz";
-        sha512 = "3PvUwBerLNVJiIVQdpkWF9F/M0ekgb2NPJWOhsE28RXSQPsY42YSnaJ8d1kZjcAz58TZ/Fk9Tw64xJsENFlJNw==";
+        url = "https://registry.npmjs.org/hoek/-/hoek-6.0.2.tgz";
+        sha512 = "0RGPLkyxpsMJVj/iOCaJaIWFEch988eUicJJpRiQ+Or1CMvBXcoZPlSx9FhreDWw4hxMYy8xgTEdlsYQDTnxWA==";
       };
     };
     "hogan.js-3.0.2" = {
@@ -14992,6 +16198,15 @@ let
         sha1 = "e36c3f2d2cae7d746a857e38d18d5f32a7882db8";
       };
     };
+    "home-or-tmp-3.0.0" = {
+      name = "home-or-tmp";
+      packageName = "home-or-tmp";
+      version = "3.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/home-or-tmp/-/home-or-tmp-3.0.0.tgz";
+        sha1 = "57a8fe24cf33cdd524860a15821ddc25c86671fb";
+      };
+    };
     "homedir-polyfill-1.0.1" = {
       name = "homedir-polyfill";
       packageName = "homedir-polyfill";
@@ -15118,6 +16333,15 @@ let
         sha512 = "5ai2iksyV8ZXmnZhHH4rWPoxxistEexSi5936zIQ1bnNTW5VnA85B6P/VpXiRM017IgRvb2kKo1a//y+0wSp3w==";
       };
     };
+    "http-cache-semantics-4.0.0" = {
+      name = "http-cache-semantics";
+      packageName = "http-cache-semantics";
+      version = "4.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/http-cache-semantics/-/http-cache-semantics-4.0.0.tgz";
+        sha512 = "NtexGRtaV5z3ZUX78W9UDTOJPBdpqms6RmwQXmOhHws7CuQK3cqIoQtnmeqi1VvVD6u6eMMRL0sKE9BCZXTDWQ==";
+      };
+    };
     "http-errors-1.3.1" = {
       name = "http-errors";
       packageName = "http-errors";
@@ -15325,13 +16549,13 @@ let
         sha512 = "PH5GBkXqFxw5+4eKaKRIkD23y6vRd/IXSl7IldyJxEXpDH9SEIXRORkBtkGni/ae2P7RVOw6Wxypd2tGXhha1w==";
       };
     };
-    "hypercore-6.20.2" = {
+    "hypercore-6.21.0" = {
       name = "hypercore";
       packageName = "hypercore";
-      version = "6.20.2";
+      version = "6.21.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/hypercore/-/hypercore-6.20.2.tgz";
-        sha512 = "VALfzDCqS0cIxoRvlQmCn4QYnQcUDCazyOQq3c0lbp1AvzEjaq62BvYDH28pmWeASokBszuysgsrPFTn704DbA==";
+        url = "https://registry.npmjs.org/hypercore/-/hypercore-6.21.0.tgz";
+        sha512 = "LPKI+nvgbFTKbXD1y6It3PUZDIQFHSYIeSDbqIZeIVuSoeI4PYcCehKdqB9Wls31AIZL7cFwA5o64uOtBxF1cA==";
       };
     };
     "hypercore-crypto-1.0.0" = {
@@ -15586,6 +16810,15 @@ let
         sha512 = "LWbJPZnidF8eczu7XmcnLBsumuyRBkpwIRPCZxlojouhBo5jEBO4toj6n7hMy6IxHU/c+MqDSWkvaTpPlMQcyA==";
       };
     };
+    "import-fresh-2.0.0" = {
+      name = "import-fresh";
+      packageName = "import-fresh";
+      version = "2.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/import-fresh/-/import-fresh-2.0.0.tgz";
+        sha1 = "d81355c15612d386c61f9ddd3922d4304822a546";
+      };
+    };
     "import-global-0.1.0" = {
       name = "import-global";
       packageName = "import-global";
@@ -15622,6 +16855,15 @@ let
         sha512 = "vAaZHieK9qjGo58agRBg+bhHX3hoTZU/Oa3GESWLz7t1U62fk63aHuDJJEteXoDeTCcPmUT+z38gkHPZkkmpmQ==";
       };
     };
+    "import-local-2.0.0" = {
+      name = "import-local";
+      packageName = "import-local";
+      version = "2.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/import-local/-/import-local-2.0.0.tgz";
+        sha512 = "b6s04m3O+s3CGSbqDIyP4R6aAwAeYlVq9+WUWep6iHa8ETRf9yei1U48C5MmfJmV9AiLYYBKPMq/W+/WRpQmCQ==";
+      };
+    };
     "imurmurhash-0.1.4" = {
       name = "imurmurhash";
       packageName = "imurmurhash";
@@ -16486,6 +17728,15 @@ let
         sha512 = "JfyDDwUdtS4yHCgUpxOyKB9dnfZ0gecufxB0eytX6BmSXSE+8dbxDGt+V7CNRIRJ9sYFV/WQt2KJG6hNob2sBw==";
       };
     };
+    "is-module-1.0.0" = {
+      name = "is-module";
+      packageName = "is-module";
+      version = "1.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/is-module/-/is-module-1.0.0.tgz";
+        sha1 = "3258fb69f78c14d5b815d664336b4cffb6441591";
+      };
+    };
     "is-my-ip-valid-1.0.0" = {
       name = "is-my-ip-valid";
       packageName = "is-my-ip-valid";
@@ -17053,6 +18304,24 @@ let
         sha1 = "47e63f7af55afa6f92e1500e690eb8b8529c099a";
       };
     };
+    "istanbul-lib-coverage-1.2.1" = {
+      name = "istanbul-lib-coverage";
+      packageName = "istanbul-lib-coverage";
+      version = "1.2.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/istanbul-lib-coverage/-/istanbul-lib-coverage-1.2.1.tgz";
+        sha512 = "PzITeunAgyGbtY1ibVIUiV679EFChHjoMNRibEIobvmrCRaIgwLxNucOSimtNWUhEib/oO7QY2imD75JVgCJWQ==";
+      };
+    };
+    "istanbul-lib-instrument-1.10.2" = {
+      name = "istanbul-lib-instrument";
+      packageName = "istanbul-lib-instrument";
+      version = "1.10.2";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/istanbul-lib-instrument/-/istanbul-lib-instrument-1.10.2.tgz";
+        sha512 = "aWHxfxDqvh/ZlxR8BBaEPVSWDPUkGD63VjGQn3jcw8jCp7sHEMKcrj4xfJn/ABzdMEHiQNyvDQhqm5o8+SQg7A==";
+      };
+    };
     "isurl-1.0.0" = {
       name = "isurl";
       packageName = "isurl";
@@ -17224,6 +18493,15 @@ let
         sha512 = "xcinL3AuDJk7VSzsHgb9DvvIXayBbadtMZ4HFPx8rUszbW1MuNMlwYVC4zzCZ6e1sqZpnNS5ZFYOhXqA39T7LQ==";
       };
     };
+    "js-levenshtein-1.1.4" = {
+      name = "js-levenshtein";
+      packageName = "js-levenshtein";
+      version = "1.1.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/js-levenshtein/-/js-levenshtein-1.1.4.tgz";
+        sha512 = "PxfGzSs0ztShKrUYPIn5r0MtyAhYcCwmndozzpz8YObbPnD1jFxzlBGbRnX2mIu6Z13xN6+PTu05TQFnZFlzow==";
+      };
+    };
     "js-message-1.0.5" = {
       name = "js-message";
       packageName = "js-message";
@@ -17251,6 +18529,15 @@ let
         sha1 = "c284e22824d5927aec962dcdf247174aefb0d190";
       };
     };
+    "js-string-escape-1.0.1" = {
+      name = "js-string-escape";
+      packageName = "js-string-escape";
+      version = "1.0.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/js-string-escape/-/js-string-escape-1.0.1.tgz";
+        sha1 = "e2625badbc0d67c7533e9edc1068c587ae4137ef";
+      };
+    };
     "js-stringify-1.0.2" = {
       name = "js-stringify";
       packageName = "js-stringify";
@@ -17341,22 +18628,31 @@ let
         sha1 = "40b402770c2bda23469096bee91ab675e3b1fc6e";
       };
     };
+    "jsesc-0.5.0" = {
+      name = "jsesc";
+      packageName = "jsesc";
+      version = "0.5.0";
+      src = fetchurl {
+        url = "http://registry.npmjs.org/jsesc/-/jsesc-0.5.0.tgz";
+        sha1 = "e7dee66e35d6fc16f710fe91d5cf69f70f08911d";
+      };
+    };
     "jsesc-1.3.0" = {
       name = "jsesc";
       packageName = "jsesc";
       version = "1.3.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/jsesc/-/jsesc-1.3.0.tgz";
+        url = "http://registry.npmjs.org/jsesc/-/jsesc-1.3.0.tgz";
         sha1 = "46c3fec8c1892b12b0833db9bc7622176dbab34b";
       };
     };
-    "jsesc-2.5.1" = {
+    "jsesc-2.5.2" = {
       name = "jsesc";
       packageName = "jsesc";
-      version = "2.5.1";
+      version = "2.5.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/jsesc/-/jsesc-2.5.1.tgz";
-        sha1 = "e421a2a8e20d6b0819df28908f782526b96dd1fe";
+        url = "https://registry.npmjs.org/jsesc/-/jsesc-2.5.2.tgz";
+        sha512 = "OYu7XEzjkCQ3C5Ps3QIZsQfNpqoJyZZA99wd9aWd05NCtC5pWOkShK2mkL6HXQR6/Cy2lbNdPlZBpuQHXE63gA==";
       };
     };
     "jshint-2.9.6" = {
@@ -17800,6 +19096,16 @@ let
         sha512 = "5W8NUaFRFRqTOL7ZDDrx5qWHJyBXy6velVudIzQUSoqAAYqzSh2Z7/m0Rf1QbmQJccegD0r+YZxBjzqoBiEeJQ==";
       };
     };
+    "jszip-git://github.com/anmonteiro/jszip#patch-1" = {
+      name = "jszip";
+      packageName = "jszip";
+      version = "2.6.1";
+      src = fetchgit {
+        url = "git://github.com/anmonteiro/jszip";
+        rev = "5a92e8c9153a3557daa8d3540b00c50bd8554c49";
+        sha256 = "00016993634d04b6f7eea8fae529b804d5a0b7ed2636361c7546a48b866e9c5c";
+      };
+    };
     "junk-2.1.0" = {
       name = "junk";
       packageName = "junk";
@@ -20249,6 +21555,15 @@ let
         sha512 = "mmLbumEYMi5nXReB9js3WGsB8UE6cDBWyIO62Z4DNx6GbRhDxHNjA1MlzSpJ2S2KM1wyiPRA0d19uHWYYvMHjA==";
       };
     };
+    "magic-string-0.25.1" = {
+      name = "magic-string";
+      packageName = "magic-string";
+      version = "0.25.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/magic-string/-/magic-string-0.25.1.tgz";
+        sha512 = "sCuTz6pYom8Rlt4ISPFn6wuFodbKMIHUMv4Qko9P17dpxb7s52KJTmRuZZqHdGmLCK9AOcDare039nRIcfdkEg==";
+      };
+    };
     "magnet-uri-2.0.1" = {
       name = "magnet-uri";
       packageName = "magnet-uri";
@@ -20645,15 +21960,6 @@ let
         sha1 = "5edd52b485ca1d900fe64895505399a0dfa45f76";
       };
     };
-    "mem-3.0.1" = {
-      name = "mem";
-      packageName = "mem";
-      version = "3.0.1";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/mem/-/mem-3.0.1.tgz";
-        sha512 = "QKs47bslvOE0NbXOqG6lMxn6Bk0Iuw0vfrIeLykmQle2LkCw1p48dZDdzE+D88b/xqRJcZGcMNeDvSVma+NuIQ==";
-      };
-    };
     "mem-4.0.0" = {
       name = "mem";
       packageName = "mem";
@@ -21352,7 +22658,7 @@ let
       packageName = "modern-syslog";
       version = "1.1.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/modern-syslog/-/modern-syslog-1.1.2.tgz";
+        url = "http://registry.npmjs.org/modern-syslog/-/modern-syslog-1.1.2.tgz";
         sha1 = "f1fa58899f3f452d788f1573401212a4ef898de5";
       };
     };
@@ -22477,6 +23783,15 @@ let
         sha1 = "4aa7bfd43f03f0b81c9702b13d6a858ddb326f3e";
       };
     };
+    "nexe-3.0.0-beta.7" = {
+      name = "nexe";
+      packageName = "nexe";
+      version = "3.0.0-beta.7";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/nexe/-/nexe-3.0.0-beta.7.tgz";
+        sha512 = "Vnvd/rHCDyvc3ZxEX/sSw6lCMsBLHqkhGQS627MtetIiFBj1G7oRw9y1All8a7Tzi560o+SGIkAbnjFR60wNlQ==";
+      };
+    };
     "next-event-1.0.0" = {
       name = "next-event";
       packageName = "next-event";
@@ -22684,6 +23999,15 @@ let
         sha512 = "5AzFzdoIMb89hBGMZglEegffzgRg+ZFoUmisQ8HI4j1KDdpx13J0taNp2y9xPbur6W61gepGDDotGBVQ7mfUCg==";
       };
     };
+    "node-modules-regexp-1.0.0" = {
+      name = "node-modules-regexp";
+      packageName = "node-modules-regexp";
+      version = "1.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/node-modules-regexp/-/node-modules-regexp-1.0.0.tgz";
+        sha1 = "8d9dbe28964a4ac5712e9131642107c71e90ec40";
+      };
+    };
     "node-notifier-5.2.1" = {
       name = "node-notifier";
       packageName = "node-notifier";
@@ -22765,6 +24089,15 @@ let
         sha512 = "mkw8HOosXHMBRdyJkio77vPx4Ls5IY26P5ZyoMWmKMkimXKTnX00DdpmNlkW+dHwMDYq1H66WzFtQhNOdEAbgA==";
       };
     };
+    "node-releases-1.0.3" = {
+      name = "node-releases";
+      packageName = "node-releases";
+      version = "1.0.3";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/node-releases/-/node-releases-1.0.3.tgz";
+        sha512 = "ZaZWMsbuDcetpHmYeKWPO6e63pSXLb50M7lJgCbcM2nC/nQC3daNifmtp5a2kp7EWwYfhuvH6zLPWkrF8IiDdw==";
+      };
+    };
     "node-request-by-swagger-1.1.4" = {
       name = "node-request-by-swagger";
       packageName = "node-request-by-swagger";
@@ -23071,6 +24404,15 @@ let
         sha512 = "D6MUW4K/VzoJ4rJ01JFKxDrtY1v9wrgzCX5f2qj/lzH1m/lW6MhUZFKerVsnyjOhOsYzI9Kqqak+10l4LvLpMw==";
       };
     };
+    "normalize-url-3.3.0" = {
+      name = "normalize-url";
+      packageName = "normalize-url";
+      version = "3.3.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/normalize-url/-/normalize-url-3.3.0.tgz";
+        sha512 = "U+JJi7duF1o+u2pynbp2zXDW2/PADgC30f0GsHZtRh+HOcXHnw137TrNlyxxRvWW5fjKd3bcLHPxofWuCjaeZg==";
+      };
+    };
     "now-and-later-2.0.0" = {
       name = "now-and-later";
       packageName = "now-and-later";
@@ -23990,6 +25332,15 @@ let
         sha512 = "hNNlAd3gfv/iPmsNxYoAPLvxg7HuPozww7fFonMZvL84tP6Ox5igfk5j/+a9rtJJwqMgKK+JgWsAQik5o0HTLA==";
       };
     };
+    "ora-3.0.0" = {
+      name = "ora";
+      packageName = "ora";
+      version = "3.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/ora/-/ora-3.0.0.tgz";
+        sha512 = "LBS97LFe2RV6GJmXBi6OKcETKyklHNMV0xw7BtsVn2MlsgsydyZetSCbCANr+PFLmDyv4KV88nn0eCKza665Mg==";
+      };
+    };
     "orchestrator-0.3.8" = {
       name = "orchestrator";
       packageName = "orchestrator";
@@ -24040,7 +25391,7 @@ let
       packageName = "os-homedir";
       version = "1.0.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/os-homedir/-/os-homedir-1.0.2.tgz";
+        url = "http://registry.npmjs.org/os-homedir/-/os-homedir-1.0.2.tgz";
         sha1 = "ffbc4988336e0e833de0c168c7ef152121aa7fb3";
       };
     };
@@ -24062,15 +25413,6 @@ let
         sha512 = "3sslG3zJbEYcaC4YVAvDorjGxc7tv6KVATnLPZONiljsUncvihe9BQoVCEs0RZ1kmf4Hk9OBqlZfJZWI4GanKA==";
       };
     };
-    "os-locale-3.0.0" = {
-      name = "os-locale";
-      packageName = "os-locale";
-      version = "3.0.0";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/os-locale/-/os-locale-3.0.0.tgz";
-        sha512 = "4mi6ZXIp4OtcV/Bwzl9p9Cvae7KJv/czGIm/HK0iaXCuRh7BMpy4l4o4CLjN+atsRQpCW9Rs4FdhfnK0zaR1Jg==";
-      };
-    };
     "os-locale-3.0.1" = {
       name = "os-locale";
       packageName = "os-locale";
@@ -24112,7 +25454,7 @@ let
       packageName = "os-tmpdir";
       version = "1.0.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/os-tmpdir/-/os-tmpdir-1.0.2.tgz";
+        url = "http://registry.npmjs.org/os-tmpdir/-/os-tmpdir-1.0.2.tgz";
         sha1 = "bbe67406c79aa85c5cfec766fe5734555dfa1274";
       };
     };
@@ -24170,6 +25512,15 @@ let
         sha512 = "HNa1A8LvB1kie7cERyy21VNeHb2CWJJYqyyC2o3klWFfMGlFmWv2Z7sFgZH8ZiaYL95ydToKTFVXgMV/Os0bBQ==";
       };
     };
+    "p-cancelable-1.0.0" = {
+      name = "p-cancelable";
+      packageName = "p-cancelable";
+      version = "1.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/p-cancelable/-/p-cancelable-1.0.0.tgz";
+        sha512 = "USgPoaC6tkTGlS831CxsVdmZmyb8tR1D+hStI84MyckLOzfJlYQUweomrwE3D8T7u5u5GVuW064LT501wHTYYA==";
+      };
+    };
     "p-defer-1.0.0" = {
       name = "p-defer";
       packageName = "p-defer";
@@ -24179,6 +25530,15 @@ let
         sha1 = "9f6eb182f6c9aa8cd743004a7d4f96b196b0fb0c";
       };
     };
+    "p-event-2.1.0" = {
+      name = "p-event";
+      packageName = "p-event";
+      version = "2.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/p-event/-/p-event-2.1.0.tgz";
+        sha512 = "sDEpDVnzLGlJj3k590uUdpfEUySP5yAYlvfTCu5hTDvSTXQVecYWKcEwdO49PrZlnJ5wkfAvtawnno/jyXeqvA==";
+      };
+    };
     "p-finally-1.0.0" = {
       name = "p-finally";
       packageName = "p-finally";
@@ -24458,6 +25818,15 @@ let
         sha1 = "df94fd8cf6531ecf75e6bef9a0858fbc72be2247";
       };
     };
+    "paredit.js-0.3.4" = {
+      name = "paredit.js";
+      packageName = "paredit.js";
+      version = "0.3.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/paredit.js/-/paredit.js-0.3.4.tgz";
+        sha512 = "b6t7ORo/MwT6xvRiuu1c1do3+CAUd7/0rgc1d3qNHUeP64zxy4ttLIvK7SEHzyfyDLvD9pPuV9mYKHf6MgUkmg==";
+      };
+    };
     "parents-1.0.1" = {
       name = "parents";
       packageName = "parents";
@@ -24904,7 +26273,7 @@ let
       packageName = "path-is-absolute";
       version = "1.0.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/path-is-absolute/-/path-is-absolute-1.0.1.tgz";
+        url = "http://registry.npmjs.org/path-is-absolute/-/path-is-absolute-1.0.1.tgz";
         sha1 = "174b9268735534ffbc7ace6bf53a5a9e1b5c5f5f";
       };
     };
@@ -25224,6 +26593,24 @@ let
         sha1 = "e5a4acd2c101fdf3d9a4d07f0dbc4db49dd28176";
       };
     };
+    "pify-4.0.1" = {
+      name = "pify";
+      packageName = "pify";
+      version = "4.0.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/pify/-/pify-4.0.1.tgz";
+        sha512 = "uB80kBFb/tfd68bVleG9T5GGsGPjJrLAUpR5PZIrhBnIaRTQRjqdJSsIKkOP6OAIFbj7GOrcudc5pNjZ+geV2g==";
+      };
+    };
+    "pinkie-1.0.0" = {
+      name = "pinkie";
+      packageName = "pinkie";
+      version = "1.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/pinkie/-/pinkie-1.0.0.tgz";
+        sha1 = "5a47f28ba1015d0201bda7bf0f358e47bec8c7e4";
+      };
+    };
     "pinkie-2.0.4" = {
       name = "pinkie";
       packageName = "pinkie";
@@ -25233,6 +26620,15 @@ let
         sha1 = "72556b80cfa0d48a974e80e77248e80ed4f7f870";
       };
     };
+    "pinkie-promise-1.0.0" = {
+      name = "pinkie-promise";
+      packageName = "pinkie-promise";
+      version = "1.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/pinkie-promise/-/pinkie-promise-1.0.0.tgz";
+        sha1 = "d1da67f5482563bb7cf57f286ae2822ecfbf3670";
+      };
+    };
     "pinkie-promise-2.0.1" = {
       name = "pinkie-promise";
       packageName = "pinkie-promise";
@@ -25242,13 +26638,22 @@ let
         sha1 = "2135d6dfa7a358c069ac9b178776288228450ffa";
       };
     };
-    "pino-5.0.4" = {
+    "pino-5.5.0" = {
       name = "pino";
       packageName = "pino";
-      version = "5.0.4";
+      version = "5.5.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/pino/-/pino-5.0.4.tgz";
-        sha512 = "w7UohXesFggN77UyTnt0A7FqkEiq6TbeXgTvY7g1wFGXoGbxmF780uFm8oQKaWlFi7vnzDRkBnYHNaaHFUKEoQ==";
+        url = "https://registry.npmjs.org/pino/-/pino-5.5.0.tgz";
+        sha512 = "cCaBKVwutiaGwgKXyOvsRSCeBxgi2j0X1PEK1cog1/9SMDhgL8+iJwWvTKUef20HDyGfZIUq5KaH0ZOhWLHYSw==";
+      };
+    };
+    "pino-5.8.1" = {
+      name = "pino";
+      packageName = "pino";
+      version = "5.8.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/pino/-/pino-5.8.1.tgz";
+        sha512 = "7bVFzUw3ffIfOM3t7MuQ9KsH+wX5bdGdQhGfccKgleoY7qG4FO3CmVSjywlFmmYGyMOISi1LDGC6JMEH7XkZJg==";
       };
     };
     "pino-std-serializers-2.3.0" = {
@@ -25260,6 +26665,15 @@ let
         sha512 = "klfGoOsP6sJH7ON796G4xoUSx2fkpFgKHO4YVVO2zmz31jR+etzc/QzGJILaOIiCD6HTCFgkPx+XN8nk+ruqPw==";
       };
     };
+    "pirates-4.0.0" = {
+      name = "pirates";
+      packageName = "pirates";
+      version = "4.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/pirates/-/pirates-4.0.0.tgz";
+        sha512 = "8t5BsXy1LUIjn3WWOlOuFDuKswhQb/tkak641lvBgmPOBUQHXveORtlMCp6OdPV1dtuTaEahKA8VNz6uLfKBtA==";
+      };
+    };
     "pkg-dir-2.0.0" = {
       name = "pkg-dir";
       packageName = "pkg-dir";
@@ -25269,6 +26683,15 @@ let
         sha1 = "f6d5d1109e19d63edf428e0bd57e12777615334b";
       };
     };
+    "pkg-dir-3.0.0" = {
+      name = "pkg-dir";
+      packageName = "pkg-dir";
+      version = "3.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/pkg-dir/-/pkg-dir-3.0.0.tgz";
+        sha512 = "/E57AYkoeQ25qkxMj5PBOVgF8Kiu/h7cYS30Z5+R7WaiCCBfLq58ZI/dSeaEKb9WVJV5n/03QwrN3IeWIFllvw==";
+      };
+    };
     "pkg-up-2.0.0" = {
       name = "pkg-up";
       packageName = "pkg-up";
@@ -25512,6 +26935,16 @@ let
         sha1 = "01eac0fe3b5af71a2a6c02feabb8c1fef7e00eab";
       };
     };
+    "posix-getopt-git://github.com/anmonteiro/node-getopt#master" = {
+      name = "posix-getopt";
+      packageName = "posix-getopt";
+      version = "1.2.0";
+      src = fetchgit {
+        url = "git://github.com/anmonteiro/node-getopt";
+        rev = "a3123885e3559c9b70903948d6e5c34852520d74";
+        sha256 = "0092766ac49279342f7d17677359880b44b245ad9d32237a11a5ea45cb0d03fa";
+      };
+    };
     "postcss-6.0.23" = {
       name = "postcss";
       packageName = "postcss";
@@ -25521,6 +26954,15 @@ let
         sha512 = "soOk1h6J3VMTZtVeVpv15/Hpdl2cBLX3CAw4TAbkpTJiNPk9YP/zWcD1ND+xEtvyuuvKzbxliTOIyvkSeSJ6ag==";
       };
     };
+    "postcss-7.0.5" = {
+      name = "postcss";
+      packageName = "postcss";
+      version = "7.0.5";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/postcss/-/postcss-7.0.5.tgz";
+        sha512 = "HBNpviAUFCKvEh7NZhw1e8MBPivRszIiUnhrJ+sBFVSYSqubrzwX3KG51mYgcRHX8j/cAgZJedONZcm5jTBdgQ==";
+      };
+    };
     "prebuild-install-2.1.2" = {
       name = "prebuild-install";
       packageName = "prebuild-install";
@@ -25584,6 +27026,15 @@ let
         sha1 = "815ed1f6ebc65926f865b310c0713bcb3315ce4b";
       };
     };
+    "prettier-1.15.1" = {
+      name = "prettier";
+      packageName = "prettier";
+      version = "1.15.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/prettier/-/prettier-1.15.1.tgz";
+        sha512 = "4rgV2hyc/5Pk0XHH4VjJWHRgVjgRbpMfLQjREAhHBtyW1UvTFkjJEsueGYNYYZd9mn97K+1qv0EBwm11zoaSgA==";
+      };
+    };
     "prettier-bytes-1.0.4" = {
       name = "prettier-bytes";
       packageName = "prettier-bytes";
@@ -27375,6 +28826,15 @@ let
         sha1 = "9cbc686978fee65d16c00e2b19c237fcf6e38389";
       };
     };
+    "read-pkg-4.0.1" = {
+      name = "read-pkg";
+      packageName = "read-pkg";
+      version = "4.0.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/read-pkg/-/read-pkg-4.0.1.tgz";
+        sha1 = "963625378f3e1c4d48c85872b5a6ec7d5d093237";
+      };
+    };
     "read-pkg-up-1.0.1" = {
       name = "read-pkg-up";
       packageName = "read-pkg-up";
@@ -27618,6 +29078,24 @@ let
         sha1 = "e0c93542c574521bea13df0f9488ed82ab77c5da";
       };
     };
+    "regenerate-1.4.0" = {
+      name = "regenerate";
+      packageName = "regenerate";
+      version = "1.4.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/regenerate/-/regenerate-1.4.0.tgz";
+        sha512 = "1G6jJVDWrt0rK99kBjvEtziZNCICAuvIPkSiUFIQxVP06RCVpq3dmDo2oi6ABpYaDYaTRr67BEhL8r1wgEZZKg==";
+      };
+    };
+    "regenerate-unicode-properties-7.0.0" = {
+      name = "regenerate-unicode-properties";
+      packageName = "regenerate-unicode-properties";
+      version = "7.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/regenerate-unicode-properties/-/regenerate-unicode-properties-7.0.0.tgz";
+        sha512 = "s5NGghCE4itSlUS+0WUj88G6cfMVMmH8boTPNvABf8od+2dhT9WDlWu8n01raQAJZMOK8Ch6jSexaRO7swd6aw==";
+      };
+    };
     "regenerator-runtime-0.10.5" = {
       name = "regenerator-runtime";
       packageName = "regenerator-runtime";
@@ -27654,6 +29132,15 @@ let
         sha1 = "d33eb95d0d2001a4be39659707c51b0cb71ce029";
       };
     };
+    "regenerator-transform-0.13.3" = {
+      name = "regenerator-transform";
+      packageName = "regenerator-transform";
+      version = "0.13.3";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/regenerator-transform/-/regenerator-transform-0.13.3.tgz";
+        sha512 = "5ipTrZFSq5vU2YoGoww4uaRVAK4wyYC4TSICibbfEPOruUu8FFP7ErV0BjmbIOEpn3O/k9na9UEdYR/3m7N6uA==";
+      };
+    };
     "regex-cache-0.4.4" = {
       name = "regex-cache";
       packageName = "regex-cache";
@@ -27699,6 +29186,15 @@ let
         sha512 = "lv0M6+TkDVniA3aD1Eg0DVpfU/booSu7Eev3TDO/mZKHBfVjgCGTV4t4buppESEYDtkArYFOxTJWv6S5C+iaNw==";
       };
     };
+    "regexpu-core-4.2.0" = {
+      name = "regexpu-core";
+      packageName = "regexpu-core";
+      version = "4.2.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/regexpu-core/-/regexpu-core-4.2.0.tgz";
+        sha512 = "Z835VSnJJ46CNBttalHD/dB+Sj2ezmY6Xp38npwU87peK6mqOzOpV8eYktdkLTEkzzD+JsTcxd84ozd8I14+rw==";
+      };
+    };
     "registry-auth-token-3.3.2" = {
       name = "registry-auth-token";
       packageName = "registry-auth-token";
@@ -27717,6 +29213,24 @@ let
         sha1 = "3d4ef870f73dde1d77f0cf9a381432444e174942";
       };
     };
+    "regjsgen-0.4.0" = {
+      name = "regjsgen";
+      packageName = "regjsgen";
+      version = "0.4.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/regjsgen/-/regjsgen-0.4.0.tgz";
+        sha512 = "X51Lte1gCYUdlwhF28+2YMO0U6WeN0GLpgpA7LK7mbdDnkQYiwvEpmpe0F/cv5L14EbxgrdayAG3JETBv0dbXA==";
+      };
+    };
+    "regjsparser-0.3.0" = {
+      name = "regjsparser";
+      packageName = "regjsparser";
+      version = "0.3.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/regjsparser/-/regjsparser-0.3.0.tgz";
+        sha512 = "zza72oZBBHzt64G7DxdqrOo/30bhHkwMUoT0WqfGu98XLd7N+1tsy5MJ96Bk4MD0y74n629RhmrGW6XlnLLwCA==";
+      };
+    };
     "reinterval-1.1.0" = {
       name = "reinterval";
       packageName = "reinterval";
@@ -28073,7 +29587,7 @@ let
       packageName = "require-uncached";
       version = "1.0.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/require-uncached/-/require-uncached-1.0.3.tgz";
+        url = "http://registry.npmjs.org/require-uncached/-/require-uncached-1.0.3.tgz";
         sha1 = "4e0d56d6c9662fd31e43011c4b95aa49955421d3";
       };
     };
@@ -28140,6 +29654,15 @@ let
         sha1 = "00a9f7387556e27038eae232caa372a6a59b665a";
       };
     };
+    "resolve-dependencies-2.1.1" = {
+      name = "resolve-dependencies";
+      packageName = "resolve-dependencies";
+      version = "2.1.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/resolve-dependencies/-/resolve-dependencies-2.1.1.tgz";
+        sha512 = "Qmd1eEp9CmAZZx1e3scW2Cof0kauO3Y6jKMoZIm8RN/BWwkfhUdfLV+qpb7+ONITVmqWFUdHb6r62HSlmAMv5Q==";
+      };
+    };
     "resolve-dir-1.0.1" = {
       name = "resolve-dir";
       packageName = "resolve-dir";
@@ -28437,6 +29960,78 @@ let
         sha1 = "f33fe9cfb52bbfd520aa18323bc65db110a1b76c";
       };
     };
+    "rollup-0.67.0" = {
+      name = "rollup";
+      packageName = "rollup";
+      version = "0.67.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/rollup/-/rollup-0.67.0.tgz";
+        sha512 = "p34buXxArhwv9ieTdHvdhdo65Cbig68s/Z8llbZuiX5e+3zCqnBF02Ck9IH0tECrmvvrJVMws32Ry84hTnS1Tw==";
+      };
+    };
+    "rollup-plugin-babel-4.0.3" = {
+      name = "rollup-plugin-babel";
+      packageName = "rollup-plugin-babel";
+      version = "4.0.3";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/rollup-plugin-babel/-/rollup-plugin-babel-4.0.3.tgz";
+        sha512 = "/PP0MgbPQyRywI4zRIJim6ySjTcOLo4kQbEbROqp9kOR3kHC3FeU++QpBDZhS2BcHtJTVZMVbBV46flbBN5zxQ==";
+      };
+    };
+    "rollup-plugin-babel-minify-6.1.1" = {
+      name = "rollup-plugin-babel-minify";
+      packageName = "rollup-plugin-babel-minify";
+      version = "6.1.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/rollup-plugin-babel-minify/-/rollup-plugin-babel-minify-6.1.1.tgz";
+        sha512 = "MX0lqOHp1vHd7WbHTK5OG679msgPxzGzYf4VBEg6kKptO05fgheCbN51i3EoFYSa+8/VtNDjPc23iDdZfhO2uw==";
+      };
+    };
+    "rollup-plugin-commonjs-9.2.0" = {
+      name = "rollup-plugin-commonjs";
+      packageName = "rollup-plugin-commonjs";
+      version = "9.2.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/rollup-plugin-commonjs/-/rollup-plugin-commonjs-9.2.0.tgz";
+        sha512 = "0RM5U4Vd6iHjL6rLvr3lKBwnPsaVml+qxOGaaNUWN1lSq6S33KhITOfHmvxV3z2vy9Mk4t0g4rNlVaJJsNQPWA==";
+      };
+    };
+    "rollup-plugin-node-resolve-3.4.0" = {
+      name = "rollup-plugin-node-resolve";
+      packageName = "rollup-plugin-node-resolve";
+      version = "3.4.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/rollup-plugin-node-resolve/-/rollup-plugin-node-resolve-3.4.0.tgz";
+        sha512 = "PJcd85dxfSBWih84ozRtBkB731OjXk0KnzN0oGp7WOWcarAFkVa71cV5hTJg2qpVsV2U8EUwrzHP3tvy9vS3qg==";
+      };
+    };
+    "rollup-plugin-replace-2.1.0" = {
+      name = "rollup-plugin-replace";
+      packageName = "rollup-plugin-replace";
+      version = "2.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/rollup-plugin-replace/-/rollup-plugin-replace-2.1.0.tgz";
+        sha512 = "SxrAIgpH/B5/W4SeULgreOemxcpEgKs2gcD42zXw50bhqGWmcnlXneVInQpAqzA/cIly4bJrOpeelmB9p4YXSQ==";
+      };
+    };
+    "rollup-plugin-uglify-3.0.0" = {
+      name = "rollup-plugin-uglify";
+      packageName = "rollup-plugin-uglify";
+      version = "3.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/rollup-plugin-uglify/-/rollup-plugin-uglify-3.0.0.tgz";
+        sha512 = "dehLu9eRRoV4l09aC+ySntRw1OAfoyKdbk8Nelblj03tHoynkSybqyEpgavemi1LBOH6S1vzI58/mpxkZIe1iQ==";
+      };
+    };
+    "rollup-pluginutils-2.3.3" = {
+      name = "rollup-pluginutils";
+      packageName = "rollup-pluginutils";
+      version = "2.3.3";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/rollup-pluginutils/-/rollup-pluginutils-2.3.3.tgz";
+        sha512 = "2XZwja7b6P5q4RZ5FhyX1+f46xi1Z3qBKigLRZ6VTZjwbN0K1IFGMlwm06Uu0Emcre2Z63l77nq/pzn+KxIEoA==";
+      };
+    };
     "root-2.0.0" = {
       name = "root";
       packageName = "root";
@@ -28617,6 +30212,15 @@ let
         sha512 = "JTWmoY9tWCs7zvIk/CvRjhjGaOd+OVBM987mxFo+OW66cGpdKjZcpmc74ES1sB//7Kl/PAe8+wEakuhG4pcgOw==";
       };
     };
+    "s3-stream-upload-2.0.2" = {
+      name = "s3-stream-upload";
+      packageName = "s3-stream-upload";
+      version = "2.0.2";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/s3-stream-upload/-/s3-stream-upload-2.0.2.tgz";
+        sha1 = "60342f12d4aa06ea8f389fb761a5393aedca017f";
+      };
+    };
     "safe-buffer-5.0.1" = {
       name = "safe-buffer";
       packageName = "safe-buffer";
@@ -29886,13 +31490,22 @@ let
         sha512 = "FL1b58BDrqS3A11lJ0zEdnJ3UOKqVxawAkF3k7F0CVN7VQ34aZrV+G8BZ1WC9ZL7NyrwsW0oviwsWDgRuVYtJg==";
       };
     };
-    "snyk-1.108.0" = {
+    "snyk-1.103.2" = {
       name = "snyk";
       packageName = "snyk";
-      version = "1.108.0";
+      version = "1.103.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/snyk/-/snyk-1.108.0.tgz";
-        sha512 = "QKeERkklW4DFyd49sqbwZ4xNYXtHOPCcUjNUzDfcvXzNwyxfRKhTf43nmPw6lnIcgBesrY95hMozos4WmgYl3w==";
+        url = "https://registry.npmjs.org/snyk/-/snyk-1.103.2.tgz";
+        sha512 = "rmMsNW94SQdmWQEtVDW1hiGKb3r7Gx1hVb0bTuK9mCm4/lHGmyuAG7QYdcwdhMrhGjg7yQDWCEXorEnq2JLs7Q==";
+      };
+    };
+    "snyk-1.108.2" = {
+      name = "snyk";
+      packageName = "snyk";
+      version = "1.108.2";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/snyk/-/snyk-1.108.2.tgz";
+        sha512 = "VfSHSRj4ISWf4EfySTdAVqUWnDspoFUaGs4uGp7FIbjZb35+JPaQ/hqgWKcDal+ZwTtzQvxKAdPsB3WUCBoSKg==";
       };
     };
     "snyk-config-2.2.0" = {
@@ -29904,13 +31517,31 @@ let
         sha512 = "mq0wbP/AgjcmRq5i5jg2akVVV3iSYUPTowZwKn7DChRLDL8ySOzWAwan+ImXiyNbrWo87FNI/15O6MpOnTxOIg==";
       };
     };
-    "snyk-docker-plugin-1.12.1" = {
+    "snyk-docker-plugin-1.12.0" = {
       name = "snyk-docker-plugin";
       packageName = "snyk-docker-plugin";
-      version = "1.12.1";
+      version = "1.12.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/snyk-docker-plugin/-/snyk-docker-plugin-1.12.1.tgz";
-        sha512 = "9/k+tZORb0CUoE+nFvG+ADc6vzHAkgiGR/7aZ35vxpuc9vW37LFWjmXZAfyoiGNOn1ICrPxSxarah8YsFEwE8Q==";
+        url = "https://registry.npmjs.org/snyk-docker-plugin/-/snyk-docker-plugin-1.12.0.tgz";
+        sha512 = "QqKq2bGdnf1L2PNGQrHoqcoaV/PIlJv1qjKIzwA93gfhToKGkgJ31oPXwfef/l9N+ui0Y44c4POBHFbFf8PlJw==";
+      };
+    };
+    "snyk-docker-plugin-1.12.2" = {
+      name = "snyk-docker-plugin";
+      packageName = "snyk-docker-plugin";
+      version = "1.12.2";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/snyk-docker-plugin/-/snyk-docker-plugin-1.12.2.tgz";
+        sha512 = "8bEn6tDSXPtNS6d1XRM6CSRMwM0bI3N0vRzcKVMZ9E52W9sIpv2E50noYjxcMpoRFxpLWAJ4WMtamcMtLPnNeQ==";
+      };
+    };
+    "snyk-go-plugin-1.5.2" = {
+      name = "snyk-go-plugin";
+      packageName = "snyk-go-plugin";
+      version = "1.5.2";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/snyk-go-plugin/-/snyk-go-plugin-1.5.2.tgz";
+        sha512 = "XWajcSh6Ld+I+WdcyU3DGDuE2ydThQd8ORkESy0nQ2LwekygLYVYN66OBy0uxpqYfd4qoqeg+J8lb4oGzCmyGA==";
       };
     };
     "snyk-go-plugin-1.6.0" = {
@@ -29931,6 +31562,24 @@ let
         sha512 = "9gYJluomFZ5kaww5FoBvp4zUIsr27pEJ12jQJaVf0FJ0BmyYHmbCoxvHdqjCSYS2fVtF+fmPnvw0XKQOIwA1SA==";
       };
     };
+    "snyk-gradle-plugin-2.1.1" = {
+      name = "snyk-gradle-plugin";
+      packageName = "snyk-gradle-plugin";
+      version = "2.1.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/snyk-gradle-plugin/-/snyk-gradle-plugin-2.1.1.tgz";
+        sha512 = "aFeVC5y3XkJ5BxknHhtYo76as3xJbzSQlXACGZrQZGQ/w/UhNdM8VI1QB6Eq4uEzexleB/hcJwYxNmhI2CNCeA==";
+      };
+    };
+    "snyk-module-1.8.2" = {
+      name = "snyk-module";
+      packageName = "snyk-module";
+      version = "1.8.2";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/snyk-module/-/snyk-module-1.8.2.tgz";
+        sha512 = "XqhdbZ/CUuJ5gSaYdYfapLqx9qm2Mp6nyRMBCLXe9tJSiohOJsc9fQuUDbdOiRCqpA4BD6WLl+qlwOJmJoszBg==";
+      };
+    };
     "snyk-module-1.9.1" = {
       name = "snyk-module";
       packageName = "snyk-module";
@@ -29949,6 +31598,15 @@ let
         sha512 = "9jAhZhv+7YcqtoQYCYlgMoxK+dWBKlk+wkX27Ebg3vNddNop9q5jZitRXTjsXwfSUZHRt+Ptw1f8vei9kjzZVg==";
       };
     };
+    "snyk-nodejs-lockfile-parser-1.5.1" = {
+      name = "snyk-nodejs-lockfile-parser";
+      packageName = "snyk-nodejs-lockfile-parser";
+      version = "1.5.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/snyk-nodejs-lockfile-parser/-/snyk-nodejs-lockfile-parser-1.5.1.tgz";
+        sha512 = "rfFcW+ZrOEH3NxufUCpMBpNLSb4BPOxLbAM6MoRqfYH5DhSdTHsecwRDf1gU6XzQok/9Koav+1qtP8+welJC2A==";
+      };
+    };
     "snyk-nodejs-lockfile-parser-1.7.0" = {
       name = "snyk-nodejs-lockfile-parser";
       packageName = "snyk-nodejs-lockfile-parser";
@@ -29976,6 +31634,15 @@ let
         sha512 = "g5QSHBsRJ2O4cNxKC4zlWwnQYiSgQ77Y6QgGmo3ihPX3VLZrc1amaZIpPsNe1jwXirnGj2rvR5Xw+jDjbzvHFw==";
       };
     };
+    "snyk-policy-1.12.0" = {
+      name = "snyk-policy";
+      packageName = "snyk-policy";
+      version = "1.12.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/snyk-policy/-/snyk-policy-1.12.0.tgz";
+        sha512 = "CEioNnDzccHyid7UIVl3bJ1dnG4co4ofI+KxuC1mo0IUXy64gxnBTeVoZF5gVLWbAyxGxSeW8f0+8GmWMHVb7w==";
+      };
+    };
     "snyk-policy-1.13.1" = {
       name = "snyk-policy";
       packageName = "snyk-policy";
@@ -29985,6 +31652,15 @@ let
         sha512 = "l9evS3Yk70xyvajjg+I6Ij7fr7gxpVRMZl0J1xNpWps/IVu4DSGih3aMmXi47VJozr4A/eFyj7R1lIr2GhqJCA==";
       };
     };
+    "snyk-python-plugin-1.8.2" = {
+      name = "snyk-python-plugin";
+      packageName = "snyk-python-plugin";
+      version = "1.8.2";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/snyk-python-plugin/-/snyk-python-plugin-1.8.2.tgz";
+        sha512 = "LBvjztnXarSHKyhivzM567icOOLOB98I7S9EEnjepuG+EZ0jiZzqOEMVRmzuYi+hRq3Cwh0hhjkwgJAQpKDz+g==";
+      };
+    };
     "snyk-python-plugin-1.9.0" = {
       name = "snyk-python-plugin";
       packageName = "snyk-python-plugin";
@@ -30003,6 +31679,15 @@ let
         sha512 = "7+i+LLhtBo1Pkth01xv+RYJU8a67zmJ8WFFPvSxyCjdlKIcsps4hPQFebhz+0gC5rMemlaeIV6cqwqUf9PEDpw==";
       };
     };
+    "snyk-resolve-deps-4.0.1" = {
+      name = "snyk-resolve-deps";
+      packageName = "snyk-resolve-deps";
+      version = "4.0.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/snyk-resolve-deps/-/snyk-resolve-deps-4.0.1.tgz";
+        sha512 = "gieaYoOuJLXzUmDDKfQJAqfwaxa43KmSqN2d9abRfgMXnLlX9IqyoZ1wqZMbd3WN7tsHSkpWvVwc4FHdQEkUKA==";
+      };
+    };
     "snyk-resolve-deps-4.0.2" = {
       name = "snyk-resolve-deps";
       packageName = "snyk-resolve-deps";
@@ -30143,7 +31828,7 @@ let
       packageName = "socket.io-parser";
       version = "2.1.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/socket.io-parser/-/socket.io-parser-2.1.2.tgz";
+        url = "http://registry.npmjs.org/socket.io-parser/-/socket.io-parser-2.1.2.tgz";
         sha1 = "876655b9edd555c5bdf7301cedf30a436c67b8b0";
       };
     };
@@ -30152,7 +31837,7 @@ let
       packageName = "socket.io-parser";
       version = "2.2.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/socket.io-parser/-/socket.io-parser-2.2.0.tgz";
+        url = "http://registry.npmjs.org/socket.io-parser/-/socket.io-parser-2.2.0.tgz";
         sha1 = "2609601f59e6a7fab436a53be3d333fbbfcbd30a";
       };
     };
@@ -30161,7 +31846,7 @@ let
       packageName = "socket.io-parser";
       version = "2.3.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/socket.io-parser/-/socket.io-parser-2.3.1.tgz";
+        url = "http://registry.npmjs.org/socket.io-parser/-/socket.io-parser-2.3.1.tgz";
         sha1 = "dd532025103ce429697326befd64005fcfe5b4a0";
       };
     };
@@ -30170,7 +31855,7 @@ let
       packageName = "socket.io-parser";
       version = "3.2.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/socket.io-parser/-/socket.io-parser-3.2.0.tgz";
+        url = "http://registry.npmjs.org/socket.io-parser/-/socket.io-parser-3.2.0.tgz";
         sha512 = "FYiBx7rc/KORMJlgsXysflWx/RIvtqZbyGLlHZvjfmPTPeuD/I8MaW7cfFrj5tRltICJdgwflhfZ3NVVbVLFQA==";
       };
     };
@@ -30192,6 +31877,15 @@ let
         sha512 = "0GabKw7n9mI46vcNrVfs0o6XzWzjVa3h6GaSo2UPxtWAROXUWavfJWh1M4PR5tnE0dcnQXZIDFP4yrAysLze/w==";
       };
     };
+    "socks-2.2.2" = {
+      name = "socks";
+      packageName = "socks";
+      version = "2.2.2";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/socks/-/socks-2.2.2.tgz";
+        sha512 = "g6wjBnnMOZpE0ym6e0uHSddz9p3a+WsBaaYQaBaSCJYvrC4IXykQR9MNGjLQf38e9iIIhp3b1/Zk8YZI3KGJ0Q==";
+      };
+    };
     "socks-proxy-agent-3.0.1" = {
       name = "socks-proxy-agent";
       packageName = "socks-proxy-agent";
@@ -30246,13 +31940,13 @@ let
         sha512 = "UMmCHovws/sxIBZsIRhIl8uRPou/RFDD0vVop81T1hG106NLLgqajKKuHAOtAP6hflnZ0UrVA2VFwddTd/NQyA==";
       };
     };
-    "sodium-native-2.2.2" = {
+    "sodium-native-2.2.3" = {
       name = "sodium-native";
       packageName = "sodium-native";
-      version = "2.2.2";
+      version = "2.2.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/sodium-native/-/sodium-native-2.2.2.tgz";
-        sha512 = "TdAa+PlmWki2Spx3TJyGFVkj6gLsxs5HV/i/j2COZ5INEaCmLz15NIHgUAT/GQ0KrG8Ddy6tkvuP7B5YJpmW6g==";
+        url = "https://registry.npmjs.org/sodium-native/-/sodium-native-2.2.3.tgz";
+        sha512 = "0rQvKwlWW86YmmAhosnJ6/2PR3mdAtfuWW147L4x3/gwfL7XiJ7mf2BPvBwU16vsYQNY1yxOQg9YT/MN6qoZOA==";
       };
     };
     "sodium-universal-2.0.0" = {
@@ -30264,13 +31958,13 @@ let
         sha512 = "csdVyakzHJRyCevY4aZC2Eacda8paf+4nmRGF2N7KxCLKY2Ajn72JsExaQlJQ2BiXJncp44p3T+b80cU+2TTsg==";
       };
     };
-    "sonic-boom-0.6.1" = {
+    "sonic-boom-0.6.2" = {
       name = "sonic-boom";
       packageName = "sonic-boom";
-      version = "0.6.1";
+      version = "0.6.2";
       src = fetchurl {
-        url = "https://registry.npmjs.org/sonic-boom/-/sonic-boom-0.6.1.tgz";
-        sha512 = "3qx6XXDeG+hPNa+jla1H6BMBLcjLl8L8NRERLVeIf/EuPqoqmq4K8owG29Xu7OypT/7/YT/0uKW6YitsKA+nLQ==";
+        url = "https://registry.npmjs.org/sonic-boom/-/sonic-boom-0.6.2.tgz";
+        sha512 = "JVftM6ZJanmU/akt+bfiHUKQq0MtRe0ayXyEXjB1yiZYRH6ettF4gu7Dbei4HbzTmBVNshHpPJLZ9R9lY2FjWA==";
       };
     };
     "sorcery-0.10.0" = {
@@ -30354,6 +32048,15 @@ let
         sha1 = "558e7f57a5bf6baf6501baf2ae2c9076c4502006";
       };
     };
+    "source-list-map-0.1.8" = {
+      name = "source-list-map";
+      packageName = "source-list-map";
+      version = "0.1.8";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/source-list-map/-/source-list-map-0.1.8.tgz";
+        sha1 = "c550b2ab5427f6b3f21f5afead88c4f5587b2106";
+      };
+    };
     "source-list-map-2.0.1" = {
       name = "source-list-map";
       packageName = "source-list-map";
@@ -30584,7 +32287,7 @@ let
       packageName = "spdy";
       version = "1.32.5";
       src = fetchurl {
-        url = "https://registry.npmjs.org/spdy/-/spdy-1.32.5.tgz";
+        url = "http://registry.npmjs.org/spdy/-/spdy-1.32.5.tgz";
         sha1 = "70eff23cde4e97d52a445f65afddcc5695eb5edb";
       };
     };
@@ -31947,13 +33650,13 @@ let
         sha1 = "a4316ccb0d40a77d30dadf91f0f4db7e475f948a";
       };
     };
-    "swagger-test-templates-1.5.0" = {
+    "swagger-test-templates-1.5.1" = {
       name = "swagger-test-templates";
       packageName = "swagger-test-templates";
-      version = "1.5.0";
+      version = "1.5.1";
       src = fetchurl {
-        url = "https://registry.npmjs.org/swagger-test-templates/-/swagger-test-templates-1.5.0.tgz";
-        sha512 = "1IBHCamO7uJuFo11a/aaA0ZPWJkAfiuvadmLO9TwXiY2Op+SigTL9er/GabuhK4gXMNJ2MaoPQ4F90HQlNFYJQ==";
+        url = "https://registry.npmjs.org/swagger-test-templates/-/swagger-test-templates-1.5.1.tgz";
+        sha512 = "p5EotTsyVunfNGvIr07r33Tij5p4r1aUv7QFvYYW3iO6pEUo2OXxINufkx8jBjD4/4hvP2ZlCjgLDexT2ClnGw==";
       };
     };
     "swagger-tools-0.9.16" = {
@@ -32164,13 +33867,13 @@ let
         sha512 = "pQNFsg+Wb6VXsrIPUnuQwrHR4wD5ASBR0jRyiT4/AALFA2Nl+CjhkDX5fTmIwCuULRtyQR3Dae2BBnP2EFHscw==";
       };
     };
-    "tar-4.4.7" = {
+    "tar-4.4.8" = {
       name = "tar";
       packageName = "tar";
-      version = "4.4.7";
+      version = "4.4.8";
       src = fetchurl {
-        url = "https://registry.npmjs.org/tar/-/tar-4.4.7.tgz";
-        sha512 = "mR3MzsCdN0IEWjZRuF/J9gaWHnTwOvzjqPTcvi1xXgfKTDQRp39gRETPQEfPByAdEOGmZfx1HrRsn8estaEvtA==";
+        url = "https://registry.npmjs.org/tar/-/tar-4.4.8.tgz";
+        sha512 = "LzHF64s5chPQQS0IYBn9IN5h3i98c12bo4NCO7e0sGM2llXQ3p2FGC5sdENN4cTW48O915Sh+x+EXx7XW96xYQ==";
       };
     };
     "tar-fs-1.16.3" = {
@@ -32281,6 +33984,15 @@ let
         sha1 = "a87ee424be01a1d28f2f301045043a5bcd679a05";
       };
     };
+    "test-exclude-4.2.3" = {
+      name = "test-exclude";
+      packageName = "test-exclude";
+      version = "4.2.3";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/test-exclude/-/test-exclude-4.2.3.tgz";
+        sha512 = "SYbXgY64PT+4GAL2ocI3HwPa4Q4TBKm0cwAVeKOt/Aoc0gSpNRjJX8w0pA1LMKZ3LBmd8pYBqApFNQLII9kavA==";
+      };
+    };
     "text-extensions-1.9.0" = {
       name = "text-extensions";
       packageName = "text-extensions";
@@ -32430,7 +34142,7 @@ let
       packageName = "through2";
       version = "0.6.5";
       src = fetchurl {
-        url = "https://registry.npmjs.org/through2/-/through2-0.6.5.tgz";
+        url = "http://registry.npmjs.org/through2/-/through2-0.6.5.tgz";
         sha1 = "41ab9c67b29d57209071410e1d7a7a968cd3ad48";
       };
     };
@@ -32439,10 +34151,19 @@ let
       packageName = "through2";
       version = "2.0.3";
       src = fetchurl {
-        url = "https://registry.npmjs.org/through2/-/through2-2.0.3.tgz";
+        url = "http://registry.npmjs.org/through2/-/through2-2.0.3.tgz";
         sha1 = "0004569b37c7c74ba39c43f3ced78d1ad94140be";
       };
     };
+    "through2-2.0.5" = {
+      name = "through2";
+      packageName = "through2";
+      version = "2.0.5";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/through2/-/through2-2.0.5.tgz";
+        sha512 = "/mrRod8xqpA+IHSLyGCQ2s8SPHiCDEeQJSep1jqLYeEUClOFG2Qsh+4FU6G9VeqpZnGW/Su8LQGc4YKni5rYSQ==";
+      };
+    };
     "through2-filter-2.0.0" = {
       name = "through2-filter";
       packageName = "through2-filter";
@@ -32722,6 +34443,15 @@ let
         sha1 = "297588b7b0e7e0ac08e04e672f85c1f4999e17af";
       };
     };
+    "to-readable-stream-1.0.0" = {
+      name = "to-readable-stream";
+      packageName = "to-readable-stream";
+      version = "1.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/to-readable-stream/-/to-readable-stream-1.0.0.tgz";
+        sha512 = "Iq25XBt6zD5npPhlLVXGFN3/gyR2/qODcKNNyTMd4vbm39HUaOiAM4PMq0eMVC/Tkxz+Zjdsc55g9yyz+Yq00Q==";
+      };
+    };
     "to-regex-3.0.2" = {
       name = "to-regex";
       packageName = "to-regex";
@@ -33703,6 +35433,15 @@ let
         sha512 = "KVGLW1Bri30x00yv4HNM8kBxoqFXr0Sbo55735nvrlsx4PYBZol3UtoWgO492fSwmsetzPEZzy73rbU8OGXJcA==";
       };
     };
+    "unicode-canonical-property-names-ecmascript-1.0.4" = {
+      name = "unicode-canonical-property-names-ecmascript";
+      packageName = "unicode-canonical-property-names-ecmascript";
+      version = "1.0.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/unicode-canonical-property-names-ecmascript/-/unicode-canonical-property-names-ecmascript-1.0.4.tgz";
+        sha512 = "jDrNnXWHd4oHiTZnx/ZG7gtUTVp+gCcTTKr8L0HjlwphROEW3+Him+IpvC+xcJEFegapiMZyZe02CyuOnRmbnQ==";
+      };
+    };
     "unicode-emoji-modifier-base-1.0.0" = {
       name = "unicode-emoji-modifier-base";
       packageName = "unicode-emoji-modifier-base";
@@ -33712,6 +35451,33 @@ let
         sha1 = "dbbd5b54ba30f287e2a8d5a249da6c0cef369459";
       };
     };
+    "unicode-match-property-ecmascript-1.0.4" = {
+      name = "unicode-match-property-ecmascript";
+      packageName = "unicode-match-property-ecmascript";
+      version = "1.0.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/unicode-match-property-ecmascript/-/unicode-match-property-ecmascript-1.0.4.tgz";
+        sha512 = "L4Qoh15vTfntsn4P1zqnHulG0LdXgjSO035fEpdtp6YxXhMT51Q6vgM5lYdG/5X3MjS+k/Y9Xw4SFCY9IkR0rg==";
+      };
+    };
+    "unicode-match-property-value-ecmascript-1.0.2" = {
+      name = "unicode-match-property-value-ecmascript";
+      packageName = "unicode-match-property-value-ecmascript";
+      version = "1.0.2";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/unicode-match-property-value-ecmascript/-/unicode-match-property-value-ecmascript-1.0.2.tgz";
+        sha512 = "Rx7yODZC1L/T8XKo/2kNzVAQaRE88AaMvI1EF/Xnj3GW2wzN6fop9DDWuFAKUVFH7vozkz26DzP0qyWLKLIVPQ==";
+      };
+    };
+    "unicode-property-aliases-ecmascript-1.0.4" = {
+      name = "unicode-property-aliases-ecmascript";
+      packageName = "unicode-property-aliases-ecmascript";
+      version = "1.0.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/unicode-property-aliases-ecmascript/-/unicode-property-aliases-ecmascript-1.0.4.tgz";
+        sha512 = "2WSLa6OdYd2ng8oqiGIWnJqyFArvhn+5vgx5GTxMbUYjCYKUcuKS62YLFF0R/BDGlB1yzXjQOLtPAfHsgirEpg==";
+      };
+    };
     "unified-2.1.4" = {
       name = "unified";
       packageName = "unified";
@@ -34396,6 +36162,15 @@ let
         sha512 = "yXJmeNaw3DnnKAOKJE51sL/ZaYfWJRl1pK9dr19YFCu0ObS231AB1/LbqTKRAQ5kw8A90rA6fr4riOUpTZvQZA==";
       };
     };
+    "v8-compile-cache-2.0.2" = {
+      name = "v8-compile-cache";
+      packageName = "v8-compile-cache";
+      version = "2.0.2";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/v8-compile-cache/-/v8-compile-cache-2.0.2.tgz";
+        sha512 = "1wFuMUIM16MDJRCrpbpuEPTUGmM5QMUg0cr3KFwra2XgOgFcPGDQHDh3CszSCD2Zewc/dh/pamNEW8CbfDebUw==";
+      };
+    };
     "v8-debug-1.0.1" = {
       name = "v8-debug";
       packageName = "v8-debug";
@@ -34468,13 +36243,13 @@ let
         sha1 = "5fa912d81eb7d0c74afc140de7317f0ca7df437e";
       };
     };
-    "validator-10.8.0" = {
+    "validator-10.9.0" = {
       name = "validator";
       packageName = "validator";
-      version = "10.8.0";
+      version = "10.9.0";
       src = fetchurl {
-        url = "https://registry.npmjs.org/validator/-/validator-10.8.0.tgz";
-        sha512 = "mXqMxfCh5NLsVgYVKl9WvnHNDPCcbNppHSPPowu0VjtSsGWVY+z8hJF44edLR1nbLNzi3jYoYsIl8KZpioIk6g==";
+        url = "https://registry.npmjs.org/validator/-/validator-10.9.0.tgz";
+        sha512 = "hZJcZSWz9poXBlAkjjcsNAdrZ6JbjD3kWlNjq/+vE7RLLS/+8PAj3qVVwrwsOz/WL8jPmZ1hYkRvtlUeZAm4ug==";
       };
     };
     "validator-5.2.0" = {
@@ -34936,13 +36711,13 @@ let
         sha1 = "13587190f34e72ba7a07ebbaa7e70ac147b1fb7d";
       };
     };
-    "vue-cli-plugin-apollo-0.17.3" = {
+    "vue-cli-plugin-apollo-0.17.4" = {
       name = "vue-cli-plugin-apollo";
       packageName = "vue-cli-plugin-apollo";
-      version = "0.17.3";
+      version = "0.17.4";
       src = fetchurl {
-        url = "https://registry.npmjs.org/vue-cli-plugin-apollo/-/vue-cli-plugin-apollo-0.17.3.tgz";
-        sha512 = "IMKGkmwVAF8uAy5ngbE0XYze6i9PGSAnByqvVgLgT4YsjUHMwfyUoyVJuAtfJPZG2G+fVpcwArhBhucAWXbSXw==";
+        url = "https://registry.npmjs.org/vue-cli-plugin-apollo/-/vue-cli-plugin-apollo-0.17.4.tgz";
+        sha512 = "3bB+Vc4kqvZYF8NW9D77HcIQpqwfLM3MvQEDjRvKEFeN+ZdJ9jtmcg+CUPm7li6xMkYWyFJcOSyI8kMYRfYFcw==";
       };
     };
     "walk-2.3.14" = {
@@ -35044,6 +36819,33 @@ let
         sha512 = "YQ+BmxuTgd6UXZW3+ICGfyqRyHXVlD5GtQr5+qjiNW7bF0cqrzX500HVXPBOvgXb5YnzDd+h0zqyv61KUD7+Sg==";
       };
     };
+    "webpack-4.25.1" = {
+      name = "webpack";
+      packageName = "webpack";
+      version = "4.25.1";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/webpack/-/webpack-4.25.1.tgz";
+        sha512 = "T0GU/3NRtO4tMfNzsvpdhUr8HnzA4LTdP2zd+e5zd6CdOH5vNKHnAlO+DvzccfhPdzqRrALOFcjYxx7K5DWmvA==";
+      };
+    };
+    "webpack-cli-3.1.2" = {
+      name = "webpack-cli";
+      packageName = "webpack-cli";
+      version = "3.1.2";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/webpack-cli/-/webpack-cli-3.1.2.tgz";
+        sha512 = "Cnqo7CeqeSvC6PTdts+dywNi5CRlIPbLx1AoUPK2T6vC1YAugMG3IOoO9DmEscd+Dghw7uRlnzV1KwOe5IrtgQ==";
+      };
+    };
+    "webpack-core-0.6.9" = {
+      name = "webpack-core";
+      packageName = "webpack-core";
+      version = "0.6.9";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/webpack-core/-/webpack-core-0.6.9.tgz";
+        sha1 = "fc571588c8558da77be9efb6debdc5a3b172bdc2";
+      };
+    };
     "webpack-sources-1.3.0" = {
       name = "webpack-sources";
       packageName = "webpack-sources";
@@ -35098,15 +36900,6 @@ let
         sha512 = "dcQ1GWpOD/eEQ97k66aiEVpNnapVj90/+R+SXTPYGHpYBBypfKJEQjLrvMZ7YXbKm21gXd4NcuxUTjiv1YtLng==";
       };
     };
-    "whatwg-url-6.5.0" = {
-      name = "whatwg-url";
-      packageName = "whatwg-url";
-      version = "6.5.0";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/whatwg-url/-/whatwg-url-6.5.0.tgz";
-        sha512 = "rhRZRqx/TLJQWUpQ6bmrt2UV4f0HCQ463yQuONJqC6fO2VoEb1pTYddbe59SkYq87aoM5A3bdhMZiUiVws+fzQ==";
-      };
-    };
     "whatwg-url-7.0.0" = {
       name = "whatwg-url";
       packageName = "whatwg-url";
@@ -35206,6 +36999,15 @@ let
         sha1 = "670b3afbc552e0b55df6b7780ca74615f23ad1cb";
       };
     };
+    "which-promise-1.0.0" = {
+      name = "which-promise";
+      packageName = "which-promise";
+      version = "1.0.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/which-promise/-/which-promise-1.0.0.tgz";
+        sha1 = "20b721df05b35b706176ffa10b0909aba4603035";
+      };
+    };
     "wide-align-1.1.3" = {
       name = "wide-align";
       packageName = "wide-align";
@@ -36026,15 +37828,6 @@ let
         sha512 = "Rjp+lMYQOWtgqojx1dEWorjCofi1YN7AoFvYV7b1gx/7dAAeuI4kN5SZiEvr0ZmsZTOpDRcCqrpI10L31tFkBw==";
       };
     };
-    "yargs-12.0.1" = {
-      name = "yargs";
-      packageName = "yargs";
-      version = "12.0.1";
-      src = fetchurl {
-        url = "https://registry.npmjs.org/yargs/-/yargs-12.0.1.tgz";
-        sha512 = "B0vRAp1hRX4jgIOWFtjfNjd9OA9RWYZ6tqGA9/I/IrTMsxmKvtWy+ersM+jzpQqbC3YfLzeABPdeTgcJ9eu1qQ==";
-      };
-    };
     "yargs-12.0.2" = {
       name = "yargs";
       packageName = "yargs";
@@ -36044,6 +37837,15 @@ let
         sha512 = "e7SkEx6N6SIZ5c5H22RTZae61qtn3PYUE8JYbBFlK9sYmh3DMQ6E5ygtaG/2BW0JZi4WGgTR2IV5ChqlqrDGVQ==";
       };
     };
+    "yargs-12.0.4" = {
+      name = "yargs";
+      packageName = "yargs";
+      version = "12.0.4";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/yargs/-/yargs-12.0.4.tgz";
+        sha512 = "f5esswlPO351AnejaO2A1ZZr0zesz19RehQKwiRDqWtrraWrJy16tsUIKgDXFMVytvNOHPVmTiaTh3wO67I0fQ==";
+      };
+    };
     "yargs-3.10.0" = {
       name = "yargs";
       packageName = "yargs";
@@ -36107,6 +37909,15 @@ let
         sha512 = "VCIyR1wJoEBZUqk5PA+oOBF6ypbwh5aNB3I50guxAL/quggdfs4TtNHQrSazFA3fYZ+tEqfs0zIGlv0c/rgjbQ==";
       };
     };
+    "yargs-parser-11.1.0" = {
+      name = "yargs-parser";
+      packageName = "yargs-parser";
+      version = "11.1.0";
+      src = fetchurl {
+        url = "https://registry.npmjs.org/yargs-parser/-/yargs-parser-11.1.0.tgz";
+        sha512 = "lGA5HsbjkpCfekDBHAhgE5OE8xEoqiUDylowr+BvhRCwG1xVYTsd8hx2CYC0NY4k9RIgJeybFTG2EZW4P2aN1w==";
+      };
+    };
     "yargs-parser-4.2.1" = {
       name = "yargs-parser";
       packageName = "yargs-parser";
@@ -36596,9 +38407,9 @@ in
       sources."aws-sign2-0.6.0"
       sources."aws4-1.8.0"
       sources."azure-arm-authorization-2.0.0"
-      sources."azure-arm-batch-3.1.2"
-      sources."azure-arm-cdn-4.0.2"
-      sources."azure-arm-commerce-2.0.0"
+      sources."azure-arm-batch-3.2.0"
+      sources."azure-arm-cdn-4.1.0"
+      sources."azure-arm-commerce-2.1.0"
       sources."azure-arm-compute-3.0.0-preview"
       (sources."azure-arm-datalake-analytics-1.0.2-preview" // {
         dependencies = [
@@ -36643,11 +38454,11 @@ in
           sources."request-2.74.0"
         ];
       })
-      sources."azure-arm-resource-7.0.1"
+      sources."azure-arm-resource-7.1.0"
       sources."azure-arm-servermanagement-1.1.0"
       sources."azure-arm-storage-5.2.0"
       sources."azure-arm-trafficmanager-1.1.0-preview"
-      sources."azure-arm-website-5.5.0"
+      sources."azure-arm-website-5.6.0"
       sources."azure-asm-compute-0.18.0"
       sources."azure-asm-hdinsight-0.10.2"
       sources."azure-asm-mgmt-0.10.1"
@@ -36681,7 +38492,7 @@ in
           sources."underscore-1.9.1"
         ];
       })
-      sources."azure-servicefabric-2.0.0"
+      sources."azure-servicefabric-2.1.0"
       (sources."azure-storage-2.10.2" // {
         dependencies = [
           sources."readable-stream-2.0.6"
@@ -37236,7 +39047,7 @@ in
       sources."buffer-from-1.1.1"
       sources."buffer-xor-1.0.3"
       sources."builtin-status-codes-3.0.0"
-      sources."cached-path-relative-1.0.1"
+      sources."cached-path-relative-1.0.2"
       sources."cipher-base-1.0.4"
       sources."combine-source-map-0.8.0"
       sources."concat-map-0.0.1"
@@ -37338,7 +39149,7 @@ in
       })
       sources."syntax-error-1.4.0"
       sources."through-2.3.8"
-      sources."through2-2.0.3"
+      sources."through2-2.0.5"
       sources."timers-browserify-1.4.2"
       sources."to-arraybuffer-1.0.1"
       sources."tty-browserify-0.0.1"
@@ -37980,7 +39791,7 @@ in
       sources."builtin-status-codes-3.0.0"
       sources."builtins-1.0.3"
       sources."bytes-3.0.0"
-      sources."cached-path-relative-1.0.1"
+      sources."cached-path-relative-1.0.2"
       sources."camelcase-4.1.0"
       sources."capture-stack-trace-1.0.1"
       sources."caseless-0.12.0"
@@ -38366,7 +40177,7 @@ in
       sources."tar-2.2.1"
       sources."term-size-1.2.0"
       sources."through-2.3.8"
-      sources."through2-2.0.3"
+      sources."through2-2.0.5"
       sources."timed-out-4.0.1"
       sources."timers-browserify-1.4.2"
       sources."to-arraybuffer-1.0.1"
@@ -38450,7 +40261,7 @@ in
       sources."@cycle/run-3.4.0"
       sources."@cycle/time-0.10.1"
       sources."@types/cookiejar-2.1.0"
-      sources."@types/node-10.12.2"
+      sources."@types/node-10.12.5"
       sources."@types/superagent-3.8.2"
       sources."ansi-escapes-3.1.0"
       sources."ansi-regex-2.1.1"
@@ -38911,7 +40722,7 @@ in
       sources."has-flag-3.0.0"
       sources."http-methods-0.1.0"
       sources."http-signature-1.2.0"
-      (sources."hypercore-6.20.2" // {
+      (sources."hypercore-6.21.0" // {
         dependencies = [
           sources."process-nextick-args-1.0.7"
           sources."unordered-set-2.0.1"
@@ -39101,7 +40912,7 @@ in
       sources."siphash24-1.1.1"
       sources."slice-ansi-1.0.0"
       sources."sodium-javascript-0.5.5"
-      sources."sodium-native-2.2.2"
+      sources."sodium-native-2.2.3"
       sources."sodium-universal-2.0.0"
       sources."sorted-array-functions-1.2.0"
       sources."sorted-indexof-1.0.0"
@@ -39445,7 +41256,7 @@ in
           sources."readable-stream-2.3.6"
           sources."split2-2.2.0"
           sources."string_decoder-1.1.1"
-          sources."through2-2.0.3"
+          sources."through2-2.0.5"
         ];
       })
       sources."network-address-0.0.5"
@@ -39518,10 +41329,10 @@ in
   elasticdump = nodeEnv.buildNodePackage {
     name = "elasticdump";
     packageName = "elasticdump";
-    version = "4.0.3";
+    version = "4.1.1";
     src = fetchurl {
-      url = "https://registry.npmjs.org/elasticdump/-/elasticdump-4.0.3.tgz";
-      sha512 = "Rxbsh4LWdIlMUO+NxET9g1xHZ9Q93i7jtPESYcCyEOnRiSsZXi/AF6UmCdvmM38IgHrklI2e4DwuG1OwRIGQAA==";
+      url = "https://registry.npmjs.org/elasticdump/-/elasticdump-4.1.1.tgz";
+      sha512 = "xOHUFO48K7bHLhx8hVuIZlz7i8Zn8NVmsMGqx1YUGhsmSb1zwW/dCUfBqEHvH4iPtJf9pQPpc51wad0SmvR5XQ==";
     };
     dependencies = [
       sources."JSONStream-1.3.5"
@@ -39530,12 +41341,13 @@ in
       sources."assert-plus-1.0.0"
       sources."async-2.6.1"
       sources."asynckit-0.4.0"
-      sources."aws-sdk-2.349.0"
+      sources."aws-sdk-2.353.0"
       sources."aws-sign2-0.7.0"
       sources."aws4-1.8.0"
       sources."base64-js-1.3.0"
       sources."bcrypt-pbkdf-1.0.2"
       sources."buffer-4.9.1"
+      sources."buffer-queue-1.0.0"
       sources."bytes-3.0.0"
       sources."caseless-0.12.0"
       sources."co-4.6.0"
@@ -39557,6 +41369,7 @@ in
       sources."har-validator-5.1.0"
       sources."http-signature-1.2.0"
       sources."ieee754-1.1.8"
+      sources."inherits-2.0.3"
       sources."ini-1.3.5"
       sources."is-typedarray-1.0.0"
       sources."isarray-1.0.0"
@@ -39576,20 +41389,24 @@ in
       sources."oauth-sign-0.9.0"
       sources."optimist-0.6.1"
       sources."performance-now-2.1.0"
+      sources."process-nextick-args-2.0.0"
       sources."psl-1.1.29"
       sources."punycode-1.3.2"
       sources."qs-6.5.2"
       sources."querystring-0.2.0"
+      sources."readable-stream-2.3.6"
       (sources."request-2.88.0" // {
         dependencies = [
           sources."uuid-3.3.2"
         ];
       })
       sources."requestretry-3.0.2"
+      sources."s3-stream-upload-2.0.2"
       sources."safe-buffer-5.1.2"
       sources."safer-buffer-2.1.2"
       sources."sax-1.2.1"
       sources."sshpk-1.15.2"
+      sources."string_decoder-1.1.1"
       sources."through-2.3.8"
       (sources."tough-cookie-2.4.3" // {
         dependencies = [
@@ -39599,6 +41416,7 @@ in
       sources."tunnel-agent-0.6.0"
       sources."tweetnacl-0.14.5"
       sources."url-0.10.3"
+      sources."util-deprecate-1.0.2"
       sources."uuid-3.1.0"
       sources."verror-1.10.0"
       sources."when-3.7.8"
@@ -40237,10 +42055,10 @@ in
   eslint = nodeEnv.buildNodePackage {
     name = "eslint";
     packageName = "eslint";
-    version = "5.8.0";
+    version = "5.9.0";
     src = fetchurl {
-      url = "https://registry.npmjs.org/eslint/-/eslint-5.8.0.tgz";
-      sha512 = "Zok6Bru3y2JprqTNm14mgQ15YQu/SMDkWdnmHfFg770DIUlmMFd/gqqzCHekxzjHZJxXv3tmTpH0C1icaYJsRQ==";
+      url = "https://registry.npmjs.org/eslint/-/eslint-5.9.0.tgz";
+      sha512 = "g4KWpPdqN0nth+goDNICNXGfJF7nNnepthp46CAlJoJtC5K/cLu3NgCM3AHu1CkJ5Hzt9V0Y0PBAO6Ay/gGb+w==";
     };
     dependencies = [
       sources."@babel/code-frame-7.0.0"
@@ -40254,7 +42072,6 @@ in
       sources."argparse-1.0.10"
       sources."array-union-1.0.2"
       sources."array-uniq-1.0.3"
-      sources."arrify-1.0.1"
       sources."balanced-match-1.0.0"
       sources."brace-expansion-1.1.11"
       sources."caller-path-0.1.0"
@@ -40270,7 +42087,7 @@ in
       sources."cross-spawn-6.0.5"
       sources."debug-4.1.0"
       sources."deep-is-0.1.3"
-      sources."del-2.2.2"
+      sources."del-3.0.0"
       sources."doctrine-2.1.0"
       sources."escape-string-regexp-1.0.5"
       sources."eslint-scope-4.0.0"
@@ -40288,12 +42105,16 @@ in
       sources."fast-levenshtein-2.0.6"
       sources."figures-2.0.0"
       sources."file-entry-cache-2.0.0"
-      sources."flat-cache-1.3.0"
+      sources."flat-cache-1.3.2"
       sources."fs.realpath-1.0.0"
       sources."functional-red-black-tree-1.0.1"
       sources."glob-7.1.3"
       sources."globals-11.8.0"
-      sources."globby-5.0.0"
+      (sources."globby-6.1.0" // {
+        dependencies = [
+          sources."pify-2.3.0"
+        ];
+      })
       sources."graceful-fs-4.1.15"
       sources."has-flag-3.0.0"
       sources."iconv-lite-0.4.24"
@@ -40328,10 +42149,11 @@ in
       sources."onetime-2.0.1"
       sources."optionator-0.8.2"
       sources."os-tmpdir-1.0.2"
+      sources."p-map-1.2.0"
       sources."path-is-absolute-1.0.1"
       sources."path-is-inside-1.0.2"
       sources."path-key-2.0.1"
-      sources."pify-2.3.0"
+      sources."pify-3.0.0"
       sources."pinkie-2.0.4"
       sources."pinkie-promise-2.0.1"
       sources."pluralize-7.0.0"
@@ -40397,7 +42219,6 @@ in
       sources."argparse-1.0.10"
       sources."array-union-1.0.2"
       sources."array-uniq-1.0.3"
-      sources."arrify-1.0.1"
       sources."balanced-match-1.0.0"
       sources."brace-expansion-1.1.11"
       sources."caller-path-0.1.0"
@@ -40413,10 +42234,10 @@ in
       sources."cross-spawn-6.0.5"
       sources."debug-4.1.0"
       sources."deep-is-0.1.3"
-      sources."del-2.2.2"
+      sources."del-3.0.0"
       sources."doctrine-2.1.0"
       sources."escape-string-regexp-1.0.5"
-      sources."eslint-5.8.0"
+      sources."eslint-5.9.0"
       sources."eslint-scope-4.0.0"
       sources."eslint-utils-1.3.1"
       sources."eslint-visitor-keys-1.0.0"
@@ -40432,12 +42253,16 @@ in
       sources."fast-levenshtein-2.0.6"
       sources."figures-2.0.0"
       sources."file-entry-cache-2.0.0"
-      sources."flat-cache-1.3.0"
+      sources."flat-cache-1.3.2"
       sources."fs.realpath-1.0.0"
       sources."functional-red-black-tree-1.0.1"
       sources."glob-7.1.3"
       sources."globals-11.8.0"
-      sources."globby-5.0.0"
+      (sources."globby-6.1.0" // {
+        dependencies = [
+          sources."pify-2.3.0"
+        ];
+      })
       sources."graceful-fs-4.1.15"
       sources."has-flag-3.0.0"
       sources."iconv-lite-0.4.24"
@@ -40473,11 +42298,12 @@ in
       sources."onetime-2.0.1"
       sources."optionator-0.8.2"
       sources."os-tmpdir-1.0.2"
+      sources."p-map-1.2.0"
       sources."path-is-absolute-1.0.1"
       sources."path-is-inside-1.0.2"
       sources."path-key-2.0.1"
       sources."path-parse-1.0.6"
-      sources."pify-2.3.0"
+      sources."pify-3.0.0"
       sources."pinkie-2.0.4"
       sources."pinkie-promise-2.0.1"
       sources."pluralize-7.0.0"
@@ -41331,7 +43157,7 @@ in
         ];
       })
       sources."sodium-chloride-1.1.2"
-      sources."sodium-native-2.2.2"
+      sources."sodium-native-2.2.3"
       sources."split-buffer-1.0.0"
       sources."ssb-avatar-0.2.0"
       sources."ssb-client-4.6.0"
@@ -41445,7 +43271,7 @@ in
       sources."babel-runtime-6.26.0"
       sources."balanced-match-1.0.0"
       sources."bcrypt-pbkdf-1.0.2"
-      sources."bluebird-3.5.2"
+      sources."bluebird-3.5.3"
       (sources."body-parser-1.18.3" // {
         dependencies = [
           sources."iconv-lite-0.4.23"
@@ -41675,7 +43501,7 @@ in
       sources."js-base64-2.4.9"
       sources."js-yaml-3.12.0"
       sources."jsbn-0.1.1"
-      sources."jsesc-2.5.1"
+      sources."jsesc-2.5.2"
       sources."json-schema-0.2.3"
       (sources."json-schema-ref-parser-3.3.1" // {
         dependencies = [
@@ -41790,7 +43616,7 @@ in
         dependencies = [
           sources."debug-3.2.6"
           sources."dotenv-4.0.0"
-          sources."fs-extra-7.0.0"
+          sources."fs-extra-7.0.1"
           sources."ms-2.1.1"
         ];
       })
@@ -41882,7 +43708,7 @@ in
       sources."sync-exec-0.6.2"
       sources."term-size-1.2.0"
       sources."through-2.3.8"
-      sources."through2-2.0.3"
+      sources."through2-2.0.5"
       sources."timed-out-4.0.1"
       sources."title-case-2.1.1"
       sources."tmp-0.0.33"
@@ -41908,7 +43734,7 @@ in
       sources."utils-merge-1.0.1"
       sources."uuid-3.3.2"
       sources."validate-npm-package-license-3.0.4"
-      sources."validator-10.8.0"
+      sources."validator-10.9.0"
       sources."vary-1.1.2"
       sources."verror-1.10.0"
       sources."wcwidth-1.0.1"
@@ -42635,7 +44461,7 @@ in
       sources."strip-ansi-3.0.1"
       sources."strip-bom-1.0.0"
       sources."supports-color-2.0.0"
-      (sources."through2-2.0.3" // {
+      (sources."through2-2.0.5" // {
         dependencies = [
           sources."isarray-1.0.0"
           sources."readable-stream-2.3.6"
@@ -43377,11 +45203,11 @@ in
       sources."shelljs-0.3.0"
       sources."signal-exit-3.0.2"
       sources."smart-buffer-1.1.15"
-      sources."snyk-1.108.0"
+      sources."snyk-1.108.2"
       sources."snyk-config-2.2.0"
-      sources."snyk-docker-plugin-1.12.1"
+      sources."snyk-docker-plugin-1.12.2"
       sources."snyk-go-plugin-1.6.0"
-      sources."snyk-gradle-plugin-2.1.0"
+      sources."snyk-gradle-plugin-2.1.1"
       sources."snyk-module-1.9.1"
       sources."snyk-mvn-plugin-2.0.0"
       (sources."snyk-nodejs-lockfile-parser-1.7.0" // {
@@ -43806,7 +45632,7 @@ in
       sources."signal-exit-3.0.2"
       sources."slice-ansi-2.0.0"
       sources."smart-buffer-4.0.1"
-      sources."socks-2.2.1"
+      sources."socks-2.2.2"
       sources."socks-proxy-agent-4.0.1"
       sources."source-map-0.6.1"
       sources."split2-2.2.0"
@@ -43837,14 +45663,14 @@ in
         ];
       })
       sources."supports-color-5.5.0"
-      (sources."tar-4.4.7" // {
+      (sources."tar-4.4.8" // {
         dependencies = [
           sources."yallist-3.0.2"
         ];
       })
       sources."term-size-1.2.0"
       sources."through-2.3.8"
-      sources."through2-2.0.3"
+      sources."through2-2.0.5"
       sources."thunkify-2.1.2"
       sources."timed-out-4.0.1"
       sources."tmp-0.0.33"
@@ -44289,7 +46115,7 @@ in
       sources."thenify-all-1.6.0"
       sources."thriftrw-3.11.3"
       sources."through-2.3.8"
-      sources."through2-2.0.3"
+      sources."through2-2.0.5"
       sources."trim-newlines-2.0.0"
       sources."trim-off-newlines-1.0.1"
       sources."type-detect-4.0.8"
@@ -44350,7 +46176,7 @@ in
     };
     dependencies = [
       sources."babylon-7.0.0-beta.19"
-      sources."bluebird-3.5.2"
+      sources."bluebird-3.5.3"
       sources."catharsis-0.8.9"
       sources."escape-string-regexp-1.0.5"
       sources."graceful-fs-4.1.15"
@@ -44551,7 +46377,7 @@ in
       sha512 = "qVNq7ZZ7ZbLdzorvSlRDadS0Rh5oyItaE95v6I4wbbuSiijxn7SnnsV6dvKlcXuO2jX7lK8tn9fBulx34K/Ejg==";
     };
     dependencies = [
-      sources."@types/node-10.12.2"
+      sources."@types/node-10.12.5"
       sources."@types/semver-5.5.0"
       sources."abbrev-1.1.1"
       sources."commander-2.19.0"
@@ -45011,7 +46837,7 @@ in
       sources."better-assert-1.0.2"
       sources."binary-extensions-1.12.0"
       sources."blob-0.0.5"
-      sources."bluebird-3.5.2"
+      sources."bluebird-3.5.3"
       sources."body-parser-1.18.3"
       sources."brace-expansion-1.1.11"
       (sources."braces-2.3.2" // {
@@ -45621,7 +47447,7 @@ in
       sources."safe-buffer-5.1.2"
       sources."stream-shift-1.0.0"
       sources."string_decoder-1.1.1"
-      sources."through2-2.0.3"
+      sources."through2-2.0.5"
       sources."through2-filter-2.0.0"
       sources."to-absolute-glob-2.0.2"
       sources."to-through-2.0.0"
@@ -45923,7 +47749,11 @@ in
       sources."@lerna/collect-updates-3.3.2"
       sources."@lerna/command-3.3.0"
       sources."@lerna/conventional-commits-3.4.1"
-      sources."@lerna/create-3.4.1"
+      (sources."@lerna/create-3.4.1" // {
+        dependencies = [
+          sources."camelcase-4.1.0"
+        ];
+      })
       sources."@lerna/create-symlink-3.3.0"
       sources."@lerna/describe-ref-3.3.0"
       sources."@lerna/diff-3.3.0"
@@ -46000,7 +47830,7 @@ in
       })
       sources."bcrypt-pbkdf-1.0.2"
       sources."block-stream-0.0.9"
-      sources."bluebird-3.5.2"
+      sources."bluebird-3.5.3"
       sources."brace-expansion-1.1.11"
       (sources."braces-2.3.2" // {
         dependencies = [
@@ -46015,8 +47845,15 @@ in
       sources."cacache-11.3.1"
       sources."cache-base-1.0.1"
       sources."call-me-maybe-1.0.1"
-      sources."camelcase-4.1.0"
-      sources."camelcase-keys-4.2.0"
+      sources."caller-callsite-2.0.0"
+      sources."caller-path-2.0.0"
+      sources."callsites-2.0.0"
+      sources."camelcase-5.0.0"
+      (sources."camelcase-keys-4.2.0" // {
+        dependencies = [
+          sources."camelcase-4.1.0"
+        ];
+      })
       sources."caseless-0.12.0"
       sources."chalk-2.4.1"
       sources."chardet-0.7.0"
@@ -46077,7 +47914,7 @@ in
       sources."copy-concurrently-1.0.5"
       sources."copy-descriptor-0.1.1"
       sources."core-util-is-1.0.2"
-      sources."cosmiconfig-5.0.6"
+      sources."cosmiconfig-5.0.7"
       sources."cross-spawn-6.0.5"
       sources."currently-unhandled-0.4.1"
       sources."cyclist-0.2.2"
@@ -46086,10 +47923,9 @@ in
       sources."dateformat-3.0.3"
       sources."debug-2.6.9"
       sources."debuglog-1.0.1"
-      sources."decamelize-2.0.0"
+      sources."decamelize-1.2.0"
       (sources."decamelize-keys-1.1.0" // {
         dependencies = [
-          sources."decamelize-1.2.0"
           sources."map-obj-1.0.1"
         ];
       })
@@ -46168,7 +48004,7 @@ in
       sources."form-data-2.3.3"
       sources."fragment-cache-0.2.1"
       sources."from2-2.3.0"
-      sources."fs-extra-7.0.0"
+      sources."fs-extra-7.0.1"
       sources."fs-minipass-1.2.5"
       sources."fs-write-stream-atomic-1.0.10"
       sources."fs.realpath-1.0.0"
@@ -46185,7 +48021,6 @@ in
         dependencies = [
           sources."camelcase-2.1.1"
           sources."camelcase-keys-2.1.0"
-          sources."decamelize-1.2.0"
           sources."find-up-1.1.2"
           sources."indent-string-2.1.0"
           sources."load-json-file-1.1.0"
@@ -46255,6 +48090,11 @@ in
       sources."iferr-0.1.5"
       sources."ignore-3.3.10"
       sources."ignore-walk-3.0.1"
+      (sources."import-fresh-2.0.0" // {
+        dependencies = [
+          sources."resolve-from-3.0.0"
+        ];
+      })
       sources."import-local-1.0.0"
       sources."imurmurhash-0.1.4"
       sources."indent-string-3.2.0"
@@ -46553,7 +48393,7 @@ in
           sources."kind-of-3.2.2"
         ];
       })
-      sources."socks-2.2.1"
+      sources."socks-2.2.2"
       sources."socks-proxy-agent-4.0.1"
       sources."sort-keys-2.0.0"
       sources."source-map-0.5.7"
@@ -46601,7 +48441,7 @@ in
       sources."strip-indent-2.0.0"
       sources."strong-log-transformer-2.0.0"
       sources."supports-color-5.5.0"
-      (sources."tar-4.4.7" // {
+      (sources."tar-4.4.8" // {
         dependencies = [
           sources."yallist-3.0.2"
         ];
@@ -46610,7 +48450,7 @@ in
       sources."temp-write-3.4.0"
       sources."text-extensions-1.9.0"
       sources."through-2.3.8"
-      sources."through2-2.0.3"
+      sources."through2-2.0.5"
       sources."tmp-0.0.33"
       (sources."to-object-path-0.3.0" // {
         dependencies = [
@@ -46681,12 +48521,11 @@ in
       sources."write-file-atomic-2.3.0"
       sources."write-json-file-2.3.0"
       sources."write-pkg-3.2.0"
-      sources."xregexp-4.0.0"
       sources."xtend-4.0.1"
       sources."y18n-4.0.0"
       sources."yallist-2.1.2"
-      sources."yargs-12.0.2"
-      sources."yargs-parser-10.1.0"
+      sources."yargs-12.0.4"
+      sources."yargs-parser-11.1.0"
     ];
     buildInputs = globalBuildInputs;
     meta = {
@@ -47700,6 +49539,1257 @@ in
     production = true;
     bypassCache = true;
   };
+  "lumo-build-deps-../interpreters/clojurescript/lumo" = nodeEnv.buildNodePackage {
+    name = "lumo-build-deps";
+    packageName = "lumo-build-deps";
+    version = "1.9.0";
+    src = ../interpreters/clojurescript/lumo;
+    dependencies = [
+      sources."@babel/code-frame-7.0.0"
+      sources."@babel/core-7.1.5"
+      sources."@babel/generator-7.1.5"
+      sources."@babel/helper-annotate-as-pure-7.0.0"
+      sources."@babel/helper-builder-binary-assignment-operator-visitor-7.1.0"
+      sources."@babel/helper-call-delegate-7.1.0"
+      sources."@babel/helper-define-map-7.1.0"
+      sources."@babel/helper-explode-assignable-expression-7.1.0"
+      sources."@babel/helper-function-name-7.1.0"
+      sources."@babel/helper-get-function-arity-7.0.0"
+      sources."@babel/helper-hoist-variables-7.0.0"
+      sources."@babel/helper-member-expression-to-functions-7.0.0"
+      sources."@babel/helper-module-imports-7.0.0"
+      sources."@babel/helper-module-transforms-7.1.0"
+      sources."@babel/helper-optimise-call-expression-7.0.0"
+      sources."@babel/helper-plugin-utils-7.0.0"
+      sources."@babel/helper-regex-7.0.0"
+      sources."@babel/helper-remap-async-to-generator-7.1.0"
+      sources."@babel/helper-replace-supers-7.1.0"
+      sources."@babel/helper-simple-access-7.1.0"
+      sources."@babel/helper-split-export-declaration-7.0.0"
+      sources."@babel/helper-wrap-function-7.1.0"
+      sources."@babel/helpers-7.1.5"
+      sources."@babel/highlight-7.0.0"
+      sources."@babel/parser-7.1.5"
+      sources."@babel/plugin-external-helpers-7.0.0"
+      sources."@babel/plugin-proposal-async-generator-functions-7.1.0"
+      sources."@babel/plugin-proposal-class-properties-7.1.0"
+      sources."@babel/plugin-proposal-json-strings-7.0.0"
+      sources."@babel/plugin-proposal-object-rest-spread-7.0.0"
+      sources."@babel/plugin-proposal-optional-catch-binding-7.0.0"
+      sources."@babel/plugin-proposal-unicode-property-regex-7.0.0"
+      sources."@babel/plugin-syntax-async-generators-7.0.0"
+      sources."@babel/plugin-syntax-class-properties-7.0.0"
+      sources."@babel/plugin-syntax-json-strings-7.0.0"
+      sources."@babel/plugin-syntax-object-rest-spread-7.0.0"
+      sources."@babel/plugin-syntax-optional-catch-binding-7.0.0"
+      sources."@babel/plugin-transform-arrow-functions-7.0.0"
+      sources."@babel/plugin-transform-async-to-generator-7.1.0"
+      sources."@babel/plugin-transform-block-scoped-functions-7.0.0"
+      sources."@babel/plugin-transform-block-scoping-7.1.5"
+      sources."@babel/plugin-transform-classes-7.1.0"
+      sources."@babel/plugin-transform-computed-properties-7.0.0"
+      sources."@babel/plugin-transform-destructuring-7.1.3"
+      sources."@babel/plugin-transform-dotall-regex-7.0.0"
+      sources."@babel/plugin-transform-duplicate-keys-7.0.0"
+      sources."@babel/plugin-transform-exponentiation-operator-7.1.0"
+      sources."@babel/plugin-transform-for-of-7.0.0"
+      sources."@babel/plugin-transform-function-name-7.1.0"
+      sources."@babel/plugin-transform-literals-7.0.0"
+      sources."@babel/plugin-transform-modules-amd-7.1.0"
+      sources."@babel/plugin-transform-modules-commonjs-7.1.0"
+      sources."@babel/plugin-transform-modules-systemjs-7.1.3"
+      sources."@babel/plugin-transform-modules-umd-7.1.0"
+      sources."@babel/plugin-transform-new-target-7.0.0"
+      sources."@babel/plugin-transform-object-super-7.1.0"
+      sources."@babel/plugin-transform-parameters-7.1.0"
+      sources."@babel/plugin-transform-regenerator-7.0.0"
+      sources."@babel/plugin-transform-runtime-7.1.0"
+      sources."@babel/plugin-transform-shorthand-properties-7.0.0"
+      sources."@babel/plugin-transform-spread-7.0.0"
+      sources."@babel/plugin-transform-sticky-regex-7.0.0"
+      sources."@babel/plugin-transform-template-literals-7.0.0"
+      sources."@babel/plugin-transform-typeof-symbol-7.0.0"
+      sources."@babel/plugin-transform-unicode-regex-7.0.0"
+      sources."@babel/preset-env-7.1.5"
+      sources."@babel/preset-stage-2-7.0.0"
+      sources."@babel/runtime-7.1.5"
+      sources."@babel/template-7.1.2"
+      sources."@babel/traverse-7.1.5"
+      sources."@babel/types-7.1.5"
+      sources."@calebboyd/semaphore-1.3.1"
+      sources."@comandeer/babel-plugin-banner-4.0.0"
+      sources."@mrmlnc/readdir-enhanced-2.2.1"
+      sources."@nodelib/fs.stat-1.1.3"
+      sources."@sindresorhus/is-0.7.0"
+      sources."@szmarczak/http-timer-1.1.1"
+      sources."@types/estree-0.0.39"
+      sources."@types/node-10.12.5"
+      sources."@webassemblyjs/ast-1.7.11"
+      sources."@webassemblyjs/floating-point-hex-parser-1.7.11"
+      sources."@webassemblyjs/helper-api-error-1.7.11"
+      sources."@webassemblyjs/helper-buffer-1.7.11"
+      sources."@webassemblyjs/helper-code-frame-1.7.11"
+      sources."@webassemblyjs/helper-fsm-1.7.11"
+      sources."@webassemblyjs/helper-module-context-1.7.11"
+      sources."@webassemblyjs/helper-wasm-bytecode-1.7.11"
+      sources."@webassemblyjs/helper-wasm-section-1.7.11"
+      sources."@webassemblyjs/ieee754-1.7.11"
+      sources."@webassemblyjs/leb128-1.7.11"
+      sources."@webassemblyjs/utf8-1.7.11"
+      sources."@webassemblyjs/wasm-edit-1.7.11"
+      sources."@webassemblyjs/wasm-gen-1.7.11"
+      sources."@webassemblyjs/wasm-opt-1.7.11"
+      sources."@webassemblyjs/wasm-parser-1.7.11"
+      sources."@webassemblyjs/wast-parser-1.7.11"
+      sources."@webassemblyjs/wast-printer-1.7.11"
+      sources."@xtuc/ieee754-1.2.0"
+      sources."@xtuc/long-4.2.1"
+      sources."ace.improved-0.2.1"
+      sources."acorn-5.7.3"
+      sources."acorn-dynamic-import-3.0.0"
+      sources."ajv-6.5.5"
+      sources."ajv-keywords-3.2.0"
+      sources."amdefine-1.0.1"
+      sources."ansi-regex-2.1.1"
+      sources."ansi-styles-2.2.1"
+      (sources."anymatch-2.0.0" // {
+        dependencies = [
+          sources."arr-diff-4.0.0"
+          sources."array-unique-0.3.2"
+          sources."braces-2.3.2"
+          sources."debug-2.6.9"
+          sources."define-property-1.0.0"
+          (sources."expand-brackets-2.1.4" // {
+            dependencies = [
+              sources."define-property-0.2.5"
+            ];
+          })
+          sources."extend-shallow-2.0.1"
+          sources."extglob-2.0.4"
+          sources."fill-range-4.0.0"
+          (sources."is-accessor-descriptor-0.1.6" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          (sources."is-data-descriptor-0.1.4" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          (sources."is-descriptor-0.1.6" // {
+            dependencies = [
+              sources."kind-of-5.1.0"
+            ];
+          })
+          (sources."is-number-3.0.0" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          sources."isobject-3.0.1"
+          sources."kind-of-6.0.2"
+          sources."micromatch-3.1.10"
+          sources."ms-2.0.0"
+        ];
+      })
+      sources."app-builder-5.2.0"
+      sources."aproba-1.2.0"
+      (sources."archive-type-4.0.0" // {
+        dependencies = [
+          sources."file-type-4.4.0"
+        ];
+      })
+      sources."arr-diff-2.0.0"
+      sources."arr-flatten-1.1.0"
+      sources."arr-union-3.1.0"
+      sources."array-union-1.0.2"
+      sources."array-uniq-1.0.3"
+      sources."array-unique-0.2.1"
+      sources."arrify-1.0.1"
+      sources."asn1.js-4.10.1"
+      (sources."assert-1.4.1" // {
+        dependencies = [
+          sources."inherits-2.0.1"
+          sources."util-0.10.3"
+        ];
+      })
+      sources."assign-symbols-1.0.0"
+      sources."async-each-1.0.1"
+      sources."async-retry-1.2.3"
+      sources."atob-2.1.2"
+      (sources."babel-code-frame-6.26.0" // {
+        dependencies = [
+          sources."chalk-1.1.3"
+          sources."js-tokens-3.0.2"
+        ];
+      })
+      sources."babel-core-7.0.0-bridge.0"
+      sources."babel-eslint-10.0.1"
+      (sources."babel-generator-6.26.1" // {
+        dependencies = [
+          sources."jsesc-1.3.0"
+        ];
+      })
+      sources."babel-helper-evaluate-path-0.5.0"
+      sources."babel-helper-flip-expressions-0.4.3"
+      sources."babel-helper-is-nodes-equiv-0.0.1"
+      sources."babel-helper-is-void-0-0.4.3"
+      sources."babel-helper-mark-eval-scopes-0.4.3"
+      sources."babel-helper-remove-or-void-0.4.3"
+      sources."babel-helper-to-multiple-sequence-expressions-0.5.0"
+      sources."babel-jest-23.6.0"
+      sources."babel-loader-8.0.4"
+      sources."babel-messages-6.23.0"
+      sources."babel-plugin-istanbul-4.1.6"
+      sources."babel-plugin-jest-hoist-23.2.0"
+      sources."babel-plugin-minify-builtins-0.5.0"
+      sources."babel-plugin-minify-constant-folding-0.5.0"
+      sources."babel-plugin-minify-dead-code-elimination-0.5.0"
+      sources."babel-plugin-minify-flip-comparisons-0.4.3"
+      sources."babel-plugin-minify-guarded-expressions-0.4.3"
+      sources."babel-plugin-minify-infinity-0.4.3"
+      sources."babel-plugin-minify-mangle-names-0.5.0"
+      sources."babel-plugin-minify-numeric-literals-0.4.3"
+      sources."babel-plugin-minify-replace-0.5.0"
+      sources."babel-plugin-minify-simplify-0.5.0"
+      sources."babel-plugin-minify-type-constructors-0.4.3"
+      sources."babel-plugin-syntax-flow-6.18.0"
+      sources."babel-plugin-syntax-object-rest-spread-6.13.0"
+      sources."babel-plugin-transform-flow-strip-types-6.22.0"
+      sources."babel-plugin-transform-inline-consecutive-adds-0.4.3"
+      sources."babel-plugin-transform-member-expression-literals-6.9.4"
+      sources."babel-plugin-transform-merge-sibling-variables-6.9.4"
+      sources."babel-plugin-transform-minify-booleans-6.9.4"
+      sources."babel-plugin-transform-property-literals-6.9.4"
+      sources."babel-plugin-transform-regexp-constructors-0.4.3"
+      sources."babel-plugin-transform-remove-console-6.9.4"
+      sources."babel-plugin-transform-remove-debugger-6.9.4"
+      sources."babel-plugin-transform-remove-undefined-0.5.0"
+      sources."babel-plugin-transform-simplify-comparison-operators-6.9.4"
+      sources."babel-plugin-transform-undefined-to-void-6.9.4"
+      sources."babel-preset-jest-23.2.0"
+      sources."babel-preset-minify-0.5.0"
+      (sources."babel-runtime-6.26.0" // {
+        dependencies = [
+          sources."regenerator-runtime-0.11.1"
+        ];
+      })
+      sources."babel-template-6.26.0"
+      (sources."babel-traverse-6.26.0" // {
+        dependencies = [
+          sources."debug-2.6.9"
+          sources."globals-9.18.0"
+          sources."ms-2.0.0"
+        ];
+      })
+      (sources."babel-types-6.26.0" // {
+        dependencies = [
+          sources."to-fast-properties-1.0.3"
+        ];
+      })
+      sources."babylon-6.18.0"
+      sources."balanced-match-1.0.0"
+      (sources."base-0.11.2" // {
+        dependencies = [
+          sources."define-property-1.0.0"
+          sources."isobject-3.0.1"
+        ];
+      })
+      sources."base64-js-0.0.8"
+      sources."big.js-3.2.0"
+      sources."binary-extensions-1.12.0"
+      sources."bl-1.2.2"
+      sources."bluebird-3.5.3"
+      sources."bn.js-4.11.8"
+      sources."brace-expansion-1.1.11"
+      sources."braces-1.8.5"
+      sources."brorand-1.1.0"
+      sources."browserify-aes-1.2.0"
+      sources."browserify-cipher-1.0.1"
+      sources."browserify-des-1.0.2"
+      sources."browserify-rsa-4.0.1"
+      sources."browserify-sign-4.0.4"
+      sources."browserify-zlib-0.2.0"
+      sources."browserslist-4.3.4"
+      sources."buffer-3.6.0"
+      sources."buffer-alloc-1.2.0"
+      sources."buffer-alloc-unsafe-1.1.0"
+      sources."buffer-crc32-0.2.13"
+      sources."buffer-fill-1.0.0"
+      sources."buffer-from-1.1.1"
+      sources."buffer-xor-1.0.3"
+      sources."builtin-modules-1.1.1"
+      sources."builtin-status-codes-3.0.0"
+      sources."cacache-10.0.4"
+      (sources."cache-base-1.0.1" // {
+        dependencies = [
+          sources."isobject-3.0.1"
+        ];
+      })
+      (sources."cacheable-request-2.1.4" // {
+        dependencies = [
+          sources."lowercase-keys-1.0.0"
+        ];
+      })
+      sources."call-me-maybe-1.0.1"
+      sources."camelcase-5.0.0"
+      sources."caniuse-lite-1.0.30000907"
+      sources."caw-2.0.1"
+      (sources."chalk-2.4.1" // {
+        dependencies = [
+          sources."ansi-styles-3.2.1"
+          sources."supports-color-5.5.0"
+        ];
+      })
+      sources."cherow-1.6.8"
+      (sources."chokidar-2.0.4" // {
+        dependencies = [
+          sources."array-unique-0.3.2"
+          sources."braces-2.3.2"
+          sources."extend-shallow-2.0.1"
+          sources."fill-range-4.0.0"
+          (sources."glob-parent-3.1.0" // {
+            dependencies = [
+              sources."is-glob-3.1.0"
+            ];
+          })
+          sources."is-extglob-2.1.1"
+          sources."is-glob-4.0.0"
+          sources."is-number-3.0.0"
+          sources."isobject-3.0.1"
+        ];
+      })
+      sources."chownr-1.1.1"
+      sources."chrome-trace-event-1.0.0"
+      sources."cipher-base-1.0.4"
+      (sources."class-utils-0.3.6" // {
+        dependencies = [
+          sources."define-property-0.2.5"
+          (sources."is-accessor-descriptor-0.1.6" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          (sources."is-data-descriptor-0.1.4" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          sources."is-descriptor-0.1.6"
+          sources."isobject-3.0.1"
+          sources."kind-of-5.1.0"
+        ];
+      })
+      sources."cli-cursor-2.1.0"
+      sources."cli-spinners-1.3.1"
+      (sources."cliui-4.1.0" // {
+        dependencies = [
+          sources."ansi-regex-3.0.0"
+          sources."strip-ansi-4.0.0"
+        ];
+      })
+      sources."clone-2.1.2"
+      sources."clone-buffer-1.0.0"
+      sources."clone-response-1.0.2"
+      sources."clone-stats-1.0.0"
+      sources."cloneable-readable-1.1.2"
+      sources."code-point-at-1.1.0"
+      sources."collection-visit-1.0.0"
+      sources."color-convert-1.9.3"
+      sources."color-name-1.1.3"
+      sources."commander-2.14.1"
+      sources."commondir-1.0.1"
+      sources."component-emitter-1.2.1"
+      sources."concat-map-0.0.1"
+      sources."concat-stream-1.6.2"
+      sources."config-chain-1.1.12"
+      sources."console-browserify-1.1.0"
+      sources."constants-browserify-1.0.0"
+      sources."content-disposition-0.5.2"
+      sources."convert-source-map-1.6.0"
+      sources."copy-concurrently-1.0.5"
+      sources."copy-descriptor-0.1.1"
+      sources."core-js-2.5.7"
+      sources."core-util-is-1.0.2"
+      sources."create-ecdh-4.0.3"
+      sources."create-hash-1.2.0"
+      sources."create-hmac-1.1.7"
+      sources."cross-env-5.2.0"
+      sources."cross-spawn-6.0.5"
+      sources."crypto-browserify-3.12.0"
+      sources."cyclist-0.2.2"
+      sources."date-now-0.1.4"
+      sources."death-1.1.0"
+      sources."debug-3.2.6"
+      sources."decamelize-1.2.0"
+      sources."decode-uri-component-0.2.0"
+      sources."decompress-4.2.0"
+      sources."decompress-response-3.3.0"
+      (sources."decompress-tar-4.1.1" // {
+        dependencies = [
+          sources."file-type-5.2.0"
+        ];
+      })
+      (sources."decompress-tarbz2-4.1.1" // {
+        dependencies = [
+          sources."file-type-6.2.0"
+        ];
+      })
+      (sources."decompress-targz-4.1.1" // {
+        dependencies = [
+          sources."file-type-5.2.0"
+        ];
+      })
+      (sources."decompress-unzip-4.0.1" // {
+        dependencies = [
+          sources."file-type-3.9.0"
+          sources."get-stream-2.3.1"
+        ];
+      })
+      (sources."defaults-1.0.3" // {
+        dependencies = [
+          sources."clone-1.0.4"
+        ];
+      })
+      sources."defer-to-connect-1.0.1"
+      sources."define-properties-1.1.3"
+      (sources."define-property-2.0.2" // {
+        dependencies = [
+          sources."isobject-3.0.1"
+        ];
+      })
+      sources."des.js-1.0.0"
+      sources."detect-indent-4.0.0"
+      sources."diffie-hellman-5.0.3"
+      (sources."dir-glob-2.0.0" // {
+        dependencies = [
+          sources."path-type-3.0.0"
+          sources."pify-3.0.0"
+        ];
+      })
+      sources."domain-browser-1.2.0"
+      (sources."download-7.1.0" // {
+        dependencies = [
+          sources."got-8.3.2"
+          sources."pify-3.0.0"
+        ];
+      })
+      sources."duplexer3-0.1.4"
+      sources."duplexify-3.6.1"
+      sources."electron-to-chromium-1.3.84"
+      sources."elliptic-6.4.1"
+      sources."emojis-list-2.1.0"
+      sources."end-of-stream-1.4.1"
+      sources."enhanced-resolve-4.1.0"
+      sources."errno-0.1.7"
+      sources."error-ex-1.3.2"
+      sources."es-abstract-1.12.0"
+      sources."es-to-primitive-1.2.0"
+      sources."escape-string-regexp-1.0.5"
+      sources."eslint-scope-3.7.1"
+      sources."eslint-visitor-keys-1.0.0"
+      sources."esrecurse-4.2.1"
+      sources."estraverse-4.2.0"
+      sources."estree-walker-0.5.2"
+      sources."esutils-2.0.2"
+      sources."events-1.1.1"
+      sources."evp_bytestokey-1.0.3"
+      sources."execa-0.10.0"
+      sources."expand-brackets-0.1.5"
+      sources."expand-range-1.8.2"
+      sources."ext-list-2.2.2"
+      sources."ext-name-5.0.0"
+      (sources."extend-shallow-3.0.2" // {
+        dependencies = [
+          sources."is-extendable-1.0.1"
+        ];
+      })
+      sources."extglob-0.3.2"
+      sources."fast-deep-equal-2.0.1"
+      (sources."fast-glob-2.2.3" // {
+        dependencies = [
+          sources."arr-diff-4.0.0"
+          sources."array-unique-0.3.2"
+          (sources."braces-2.3.2" // {
+            dependencies = [
+              sources."extend-shallow-2.0.1"
+            ];
+          })
+          sources."debug-2.6.9"
+          (sources."expand-brackets-2.1.4" // {
+            dependencies = [
+              sources."define-property-0.2.5"
+              sources."extend-shallow-2.0.1"
+            ];
+          })
+          (sources."extglob-2.0.4" // {
+            dependencies = [
+              sources."define-property-1.0.0"
+              sources."extend-shallow-2.0.1"
+            ];
+          })
+          (sources."fill-range-4.0.0" // {
+            dependencies = [
+              sources."extend-shallow-2.0.1"
+            ];
+          })
+          (sources."glob-parent-3.1.0" // {
+            dependencies = [
+              sources."is-glob-3.1.0"
+            ];
+          })
+          (sources."is-accessor-descriptor-0.1.6" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          (sources."is-data-descriptor-0.1.4" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          (sources."is-descriptor-0.1.6" // {
+            dependencies = [
+              sources."kind-of-5.1.0"
+            ];
+          })
+          sources."is-extglob-2.1.1"
+          sources."is-glob-4.0.0"
+          (sources."is-number-3.0.0" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          sources."isobject-3.0.1"
+          sources."kind-of-6.0.2"
+          sources."micromatch-3.1.10"
+          sources."ms-2.0.0"
+        ];
+      })
+      sources."fast-json-stable-stringify-2.0.0"
+      sources."fd-slicer-1.1.0"
+      sources."file-type-8.1.0"
+      sources."filename-regex-2.0.1"
+      sources."filename-reserved-regex-2.0.0"
+      sources."filenamify-2.1.0"
+      sources."fill-range-2.2.4"
+      sources."find-cache-dir-1.0.0"
+      sources."find-up-2.1.0"
+      sources."flow-bin-0.85.0"
+      sources."flush-write-stream-1.0.3"
+      sources."for-in-1.0.2"
+      sources."for-own-0.1.5"
+      sources."fragment-cache-0.2.1"
+      sources."from2-2.3.0"
+      sources."fs-constants-1.0.0"
+      sources."fs-write-stream-atomic-1.0.10"
+      sources."fs.realpath-1.0.0"
+      sources."fsevents-1.2.4"
+      sources."function-bind-1.1.1"
+      sources."get-caller-file-1.0.3"
+      sources."get-proxy-2.1.0"
+      sources."get-stream-3.0.0"
+      sources."get-value-2.0.6"
+      sources."glob-7.1.3"
+      sources."glob-base-0.3.0"
+      sources."glob-parent-2.0.0"
+      sources."glob-to-regexp-0.3.0"
+      sources."global-modules-path-2.3.0"
+      sources."globals-11.8.0"
+      (sources."globby-8.0.1" // {
+        dependencies = [
+          sources."pify-3.0.0"
+        ];
+      })
+      (sources."google-closure-compiler-js-20170910.0.1" // {
+        dependencies = [
+          sources."minimist-1.2.0"
+        ];
+      })
+      (sources."got-9.3.2" // {
+        dependencies = [
+          sources."@sindresorhus/is-0.12.0"
+          sources."cacheable-request-5.1.0"
+          sources."get-stream-4.1.0"
+          sources."http-cache-semantics-4.0.0"
+          sources."normalize-url-3.3.0"
+          sources."p-cancelable-1.0.0"
+        ];
+      })
+      sources."graceful-fs-4.1.15"
+      sources."graceful-readlink-1.0.1"
+      sources."has-1.0.3"
+      sources."has-ansi-2.0.0"
+      sources."has-flag-3.0.0"
+      sources."has-symbol-support-x-1.4.2"
+      sources."has-symbols-1.0.0"
+      sources."has-to-string-tag-x-1.4.1"
+      (sources."has-value-1.0.0" // {
+        dependencies = [
+          sources."isobject-3.0.1"
+        ];
+      })
+      (sources."has-values-1.0.0" // {
+        dependencies = [
+          (sources."is-number-3.0.0" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          sources."kind-of-4.0.0"
+        ];
+      })
+      sources."hash-base-3.0.4"
+      sources."hash.js-1.1.5"
+      sources."hmac-drbg-1.0.1"
+      sources."hosted-git-info-2.7.1"
+      sources."http-cache-semantics-3.8.1"
+      sources."https-browserify-1.0.0"
+      sources."ieee754-1.1.12"
+      sources."iferr-0.1.5"
+      sources."ignore-3.3.10"
+      (sources."import-local-2.0.0" // {
+        dependencies = [
+          sources."find-up-3.0.0"
+          sources."locate-path-3.0.0"
+          sources."p-limit-2.0.0"
+          sources."p-locate-3.0.0"
+          sources."p-try-2.0.0"
+          sources."pkg-dir-3.0.0"
+        ];
+      })
+      sources."imurmurhash-0.1.4"
+      sources."indexof-0.0.1"
+      sources."inflight-1.0.6"
+      sources."inherits-2.0.3"
+      sources."ini-1.3.5"
+      sources."interpret-1.1.0"
+      sources."into-stream-3.1.0"
+      sources."invariant-2.2.4"
+      sources."invert-kv-2.0.0"
+      (sources."is-accessor-descriptor-1.0.0" // {
+        dependencies = [
+          sources."kind-of-6.0.2"
+        ];
+      })
+      sources."is-arrayish-0.2.1"
+      sources."is-binary-path-1.0.1"
+      sources."is-buffer-1.1.6"
+      sources."is-builtin-module-1.0.0"
+      sources."is-callable-1.1.4"
+      (sources."is-data-descriptor-1.0.0" // {
+        dependencies = [
+          sources."kind-of-6.0.2"
+        ];
+      })
+      sources."is-date-object-1.0.1"
+      (sources."is-descriptor-1.0.2" // {
+        dependencies = [
+          sources."kind-of-6.0.2"
+        ];
+      })
+      sources."is-dotfile-1.0.3"
+      sources."is-equal-shallow-0.1.3"
+      sources."is-extendable-0.1.1"
+      sources."is-extglob-1.0.0"
+      sources."is-finite-1.0.2"
+      sources."is-fullwidth-code-point-1.0.0"
+      sources."is-glob-2.0.1"
+      sources."is-module-1.0.0"
+      sources."is-natural-number-4.0.1"
+      sources."is-number-2.1.0"
+      sources."is-object-1.0.1"
+      sources."is-plain-obj-1.1.0"
+      (sources."is-plain-object-2.0.4" // {
+        dependencies = [
+          sources."isobject-3.0.1"
+        ];
+      })
+      sources."is-posix-bracket-0.1.1"
+      sources."is-primitive-2.0.0"
+      sources."is-regex-1.0.4"
+      sources."is-retry-allowed-1.1.0"
+      sources."is-stream-1.1.0"
+      sources."is-symbol-1.0.2"
+      sources."is-utf8-0.2.1"
+      sources."is-windows-1.0.2"
+      sources."isarray-1.0.0"
+      sources."isexe-2.0.0"
+      sources."isobject-2.1.0"
+      sources."istanbul-lib-coverage-1.2.1"
+      sources."istanbul-lib-instrument-1.10.2"
+      sources."isurl-1.0.0"
+      sources."js-levenshtein-1.1.4"
+      sources."js-tokens-4.0.0"
+      sources."jsesc-2.5.2"
+      sources."json-buffer-3.0.0"
+      sources."json-parse-better-errors-1.0.2"
+      sources."json-schema-traverse-0.4.1"
+      sources."json5-0.5.1"
+      sources."jszip-git://github.com/anmonteiro/jszip#patch-1"
+      sources."keyv-3.0.0"
+      sources."kind-of-3.2.2"
+      sources."lcid-2.0.0"
+      sources."load-json-file-1.1.0"
+      sources."loader-runner-2.3.1"
+      sources."loader-utils-1.1.0"
+      sources."locate-path-2.0.0"
+      sources."lodash-4.17.11"
+      sources."lodash.debounce-4.0.8"
+      sources."lodash.isplainobject-4.0.6"
+      sources."lodash.some-4.6.0"
+      sources."log-symbols-2.2.0"
+      sources."loose-envify-1.4.0"
+      sources."lowercase-keys-1.0.1"
+      sources."lru-cache-4.1.3"
+      sources."magic-string-0.25.1"
+      (sources."make-dir-1.3.0" // {
+        dependencies = [
+          sources."pify-3.0.0"
+        ];
+      })
+      sources."map-age-cleaner-0.1.2"
+      sources."map-cache-0.2.2"
+      sources."map-visit-1.0.0"
+      sources."math-random-1.0.1"
+      sources."md5.js-1.3.5"
+      sources."mem-4.0.0"
+      sources."memory-fs-0.4.1"
+      sources."merge2-1.2.3"
+      sources."micromatch-2.3.11"
+      sources."miller-rabin-4.0.1"
+      sources."mime-db-1.37.0"
+      sources."mimic-fn-1.2.0"
+      sources."mimic-response-1.0.1"
+      sources."minimalistic-assert-1.0.1"
+      sources."minimalistic-crypto-utils-1.0.1"
+      sources."minimatch-3.0.4"
+      sources."minimist-0.0.8"
+      (sources."mississippi-2.0.0" // {
+        dependencies = [
+          sources."pump-2.0.1"
+        ];
+      })
+      (sources."mixin-deep-1.3.1" // {
+        dependencies = [
+          sources."is-extendable-1.0.1"
+        ];
+      })
+      sources."mkdirp-0.5.1"
+      sources."move-concurrently-1.0.1"
+      sources."ms-2.1.1"
+      sources."multistream-2.1.1"
+      sources."nan-2.11.1"
+      (sources."nanomatch-1.2.13" // {
+        dependencies = [
+          sources."arr-diff-4.0.0"
+          sources."array-unique-0.3.2"
+          sources."kind-of-6.0.2"
+        ];
+      })
+      sources."neo-async-2.6.0"
+      (sources."nexe-3.0.0-beta.7" // {
+        dependencies = [
+          sources."minimist-1.2.0"
+          sources."pify-4.0.1"
+        ];
+      })
+      sources."nice-try-1.0.5"
+      sources."node-fetch-2.2.1"
+      (sources."node-libs-browser-2.1.0" // {
+        dependencies = [
+          sources."base64-js-1.3.0"
+          sources."buffer-4.9.1"
+          sources."punycode-1.4.1"
+        ];
+      })
+      sources."node-releases-1.0.3"
+      sources."normalize-package-data-2.4.0"
+      sources."normalize-path-2.1.1"
+      (sources."normalize-url-2.0.1" // {
+        dependencies = [
+          sources."sort-keys-2.0.0"
+        ];
+      })
+      (sources."npm-conf-1.1.3" // {
+        dependencies = [
+          sources."pify-3.0.0"
+        ];
+      })
+      sources."npm-run-path-2.0.2"
+      sources."number-is-nan-1.0.1"
+      sources."object-assign-4.1.1"
+      (sources."object-copy-0.1.0" // {
+        dependencies = [
+          sources."define-property-0.2.5"
+          sources."is-accessor-descriptor-0.1.6"
+          sources."is-data-descriptor-0.1.4"
+          (sources."is-descriptor-0.1.6" // {
+            dependencies = [
+              sources."kind-of-5.1.0"
+            ];
+          })
+        ];
+      })
+      sources."object-keys-1.0.12"
+      (sources."object-visit-1.0.1" // {
+        dependencies = [
+          sources."isobject-3.0.1"
+        ];
+      })
+      sources."object.getownpropertydescriptors-2.0.3"
+      sources."object.omit-2.0.1"
+      (sources."object.pick-1.3.0" // {
+        dependencies = [
+          sources."isobject-3.0.1"
+        ];
+      })
+      sources."once-1.4.0"
+      sources."onetime-2.0.1"
+      (sources."ora-3.0.0" // {
+        dependencies = [
+          sources."ansi-regex-3.0.0"
+          sources."strip-ansi-4.0.0"
+        ];
+      })
+      sources."os-browserify-0.3.0"
+      sources."os-locale-3.0.1"
+      sources."p-cancelable-0.4.1"
+      sources."p-defer-1.0.0"
+      sources."p-event-2.1.0"
+      sources."p-finally-1.0.0"
+      sources."p-is-promise-1.1.0"
+      sources."p-limit-1.3.0"
+      sources."p-locate-2.0.0"
+      sources."p-timeout-2.0.1"
+      sources."p-try-1.0.0"
+      sources."pako-1.0.6"
+      sources."parallel-transform-1.1.0"
+      sources."paredit.js-0.3.4"
+      sources."parse-asn1-5.1.1"
+      sources."parse-glob-3.0.4"
+      sources."parse-json-2.2.0"
+      sources."pascalcase-0.1.1"
+      sources."path-browserify-0.0.0"
+      sources."path-dirname-1.0.2"
+      sources."path-exists-3.0.0"
+      sources."path-is-absolute-1.0.1"
+      sources."path-key-2.0.1"
+      sources."path-parse-1.0.6"
+      sources."path-type-1.1.0"
+      sources."pbkdf2-3.0.17"
+      sources."pend-1.2.0"
+      sources."pify-2.3.0"
+      sources."pinkie-2.0.4"
+      sources."pinkie-promise-2.0.1"
+      sources."pkg-dir-2.0.0"
+      sources."posix-character-classes-0.1.1"
+      sources."posix-getopt-git://github.com/anmonteiro/node-getopt#master"
+      sources."prepend-http-2.0.0"
+      sources."preserve-0.2.0"
+      sources."prettier-1.15.1"
+      sources."private-0.1.8"
+      sources."process-0.11.10"
+      sources."process-nextick-args-2.0.0"
+      sources."progress-2.0.1"
+      sources."promise-inflight-1.0.1"
+      sources."proto-list-1.2.4"
+      sources."prr-1.0.1"
+      sources."pseudomap-1.0.2"
+      sources."public-encrypt-4.0.3"
+      sources."pump-3.0.0"
+      (sources."pumpify-1.5.1" // {
+        dependencies = [
+          sources."pump-2.0.1"
+        ];
+      })
+      sources."punycode-2.1.1"
+      sources."query-string-5.1.1"
+      sources."querystring-0.2.0"
+      sources."querystring-es3-0.2.1"
+      (sources."randomatic-3.1.1" // {
+        dependencies = [
+          sources."is-number-4.0.0"
+          sources."kind-of-6.0.2"
+        ];
+      })
+      sources."randombytes-2.0.6"
+      sources."randomfill-1.0.4"
+      (sources."read-pkg-4.0.1" // {
+        dependencies = [
+          sources."parse-json-4.0.0"
+          sources."pify-3.0.0"
+        ];
+      })
+      (sources."read-pkg-up-1.0.1" // {
+        dependencies = [
+          sources."find-up-1.1.2"
+          sources."path-exists-2.1.0"
+          sources."read-pkg-1.1.0"
+        ];
+      })
+      sources."readable-stream-2.3.6"
+      (sources."readdirp-2.2.1" // {
+        dependencies = [
+          sources."arr-diff-4.0.0"
+          sources."array-unique-0.3.2"
+          sources."braces-2.3.2"
+          sources."debug-2.6.9"
+          sources."define-property-1.0.0"
+          (sources."expand-brackets-2.1.4" // {
+            dependencies = [
+              sources."define-property-0.2.5"
+            ];
+          })
+          sources."extend-shallow-2.0.1"
+          sources."extglob-2.0.4"
+          sources."fill-range-4.0.0"
+          (sources."is-accessor-descriptor-0.1.6" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          (sources."is-data-descriptor-0.1.4" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          (sources."is-descriptor-0.1.6" // {
+            dependencies = [
+              sources."kind-of-5.1.0"
+            ];
+          })
+          (sources."is-number-3.0.0" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          sources."isobject-3.0.1"
+          sources."kind-of-6.0.2"
+          sources."micromatch-3.1.10"
+          sources."ms-2.0.0"
+        ];
+      })
+      sources."regenerate-1.4.0"
+      sources."regenerate-unicode-properties-7.0.0"
+      sources."regenerator-runtime-0.12.1"
+      sources."regenerator-transform-0.13.3"
+      sources."regex-cache-0.4.4"
+      sources."regex-not-1.0.2"
+      sources."regexpu-core-4.2.0"
+      sources."regjsgen-0.4.0"
+      (sources."regjsparser-0.3.0" // {
+        dependencies = [
+          sources."jsesc-0.5.0"
+        ];
+      })
+      sources."remove-trailing-separator-1.1.0"
+      sources."repeat-element-1.1.3"
+      sources."repeat-string-1.6.1"
+      sources."repeating-2.0.1"
+      sources."replace-ext-1.0.0"
+      sources."require-directory-2.1.1"
+      sources."require-main-filename-1.0.1"
+      sources."resolve-1.8.1"
+      sources."resolve-cwd-2.0.0"
+      (sources."resolve-dependencies-2.1.1" // {
+        dependencies = [
+          sources."pify-4.0.1"
+        ];
+      })
+      sources."resolve-from-3.0.0"
+      sources."resolve-url-0.2.1"
+      sources."responselike-1.0.2"
+      sources."restore-cursor-2.0.0"
+      sources."ret-0.1.15"
+      sources."retry-0.12.0"
+      sources."rimraf-2.6.2"
+      sources."ripemd160-2.0.2"
+      sources."rollup-0.67.0"
+      sources."rollup-plugin-babel-4.0.3"
+      sources."rollup-plugin-babel-minify-6.1.1"
+      sources."rollup-plugin-commonjs-9.2.0"
+      (sources."rollup-plugin-node-resolve-3.4.0" // {
+        dependencies = [
+          sources."builtin-modules-2.0.0"
+        ];
+      })
+      sources."rollup-plugin-replace-2.1.0"
+      sources."rollup-plugin-uglify-3.0.0"
+      sources."rollup-pluginutils-2.3.3"
+      sources."run-queue-1.0.3"
+      sources."safe-buffer-5.1.2"
+      sources."safe-regex-1.1.0"
+      sources."schema-utils-0.4.7"
+      (sources."seek-bzip-1.0.5" // {
+        dependencies = [
+          sources."commander-2.8.1"
+        ];
+      })
+      sources."semver-5.6.0"
+      sources."serialize-javascript-1.5.0"
+      sources."set-blocking-2.0.0"
+      (sources."set-value-2.0.0" // {
+        dependencies = [
+          sources."extend-shallow-2.0.1"
+        ];
+      })
+      sources."setimmediate-1.0.5"
+      sources."sha.js-2.4.11"
+      sources."shebang-command-1.2.0"
+      sources."shebang-regex-1.0.0"
+      sources."signal-exit-3.0.2"
+      sources."slash-1.0.0"
+      (sources."snapdragon-0.8.2" // {
+        dependencies = [
+          sources."debug-2.6.9"
+          sources."define-property-0.2.5"
+          sources."extend-shallow-2.0.1"
+          (sources."is-accessor-descriptor-0.1.6" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          (sources."is-data-descriptor-0.1.4" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          sources."is-descriptor-0.1.6"
+          sources."kind-of-5.1.0"
+          sources."ms-2.0.0"
+        ];
+      })
+      (sources."snapdragon-node-2.1.1" // {
+        dependencies = [
+          sources."define-property-1.0.0"
+          sources."isobject-3.0.1"
+        ];
+      })
+      sources."snapdragon-util-3.0.1"
+      sources."sort-keys-1.1.2"
+      sources."sort-keys-length-1.0.1"
+      sources."source-list-map-0.1.8"
+      sources."source-map-0.5.7"
+      sources."source-map-resolve-0.5.2"
+      sources."source-map-url-0.4.0"
+      sources."sourcemap-codec-1.4.3"
+      sources."spdx-correct-3.0.2"
+      sources."spdx-exceptions-2.2.0"
+      sources."spdx-expression-parse-3.0.0"
+      sources."spdx-license-ids-3.0.2"
+      sources."split-string-3.1.0"
+      sources."ssri-5.3.0"
+      (sources."static-extend-0.1.2" // {
+        dependencies = [
+          sources."define-property-0.2.5"
+          (sources."is-accessor-descriptor-0.1.6" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          (sources."is-data-descriptor-0.1.4" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          sources."is-descriptor-0.1.6"
+          sources."kind-of-5.1.0"
+        ];
+      })
+      sources."stream-browserify-2.0.1"
+      sources."stream-each-1.2.3"
+      sources."stream-http-2.8.3"
+      sources."stream-shift-1.0.0"
+      sources."strict-uri-encode-1.1.0"
+      (sources."string-width-2.1.1" // {
+        dependencies = [
+          sources."ansi-regex-3.0.0"
+          sources."is-fullwidth-code-point-2.0.0"
+          sources."strip-ansi-4.0.0"
+        ];
+      })
+      sources."string_decoder-1.1.1"
+      sources."strip-ansi-3.0.1"
+      sources."strip-bom-2.0.0"
+      sources."strip-dirs-2.1.0"
+      sources."strip-eof-1.0.0"
+      sources."strip-outer-1.0.1"
+      sources."supports-color-2.0.0"
+      sources."symbol-observable-1.2.0"
+      sources."tapable-1.1.0"
+      sources."tar-stream-1.6.2"
+      sources."test-exclude-4.2.3"
+      sources."through-2.3.8"
+      sources."through2-2.0.5"
+      sources."timed-out-4.0.1"
+      sources."timers-browserify-2.0.10"
+      sources."to-arraybuffer-1.0.1"
+      sources."to-buffer-1.1.1"
+      sources."to-fast-properties-2.0.0"
+      sources."to-object-path-0.3.0"
+      sources."to-readable-stream-1.0.0"
+      sources."to-regex-3.0.2"
+      (sources."to-regex-range-2.1.1" // {
+        dependencies = [
+          sources."is-number-3.0.0"
+        ];
+      })
+      sources."trim-repeated-1.0.0"
+      sources."trim-right-1.0.1"
+      sources."tslib-1.9.3"
+      sources."tty-browserify-0.0.0"
+      sources."tunnel-agent-0.6.0"
+      sources."typedarray-0.0.6"
+      (sources."uglify-es-3.3.10" // {
+        dependencies = [
+          sources."source-map-0.6.1"
+        ];
+      })
+      (sources."uglifyjs-webpack-plugin-1.3.0" // {
+        dependencies = [
+          sources."source-map-0.6.1"
+        ];
+      })
+      sources."unbzip2-stream-1.3.1"
+      sources."unicode-canonical-property-names-ecmascript-1.0.4"
+      sources."unicode-match-property-ecmascript-1.0.4"
+      sources."unicode-match-property-value-ecmascript-1.0.2"
+      sources."unicode-property-aliases-ecmascript-1.0.4"
+      (sources."union-value-1.0.0" // {
+        dependencies = [
+          sources."extend-shallow-2.0.1"
+          sources."set-value-0.4.3"
+        ];
+      })
+      sources."unique-filename-1.1.1"
+      sources."unique-slug-2.0.1"
+      (sources."unset-value-1.0.0" // {
+        dependencies = [
+          (sources."has-value-0.3.1" // {
+            dependencies = [
+              sources."isobject-2.1.0"
+            ];
+          })
+          sources."has-values-0.1.4"
+          sources."isobject-3.0.1"
+        ];
+      })
+      sources."upath-1.1.0"
+      sources."uri-js-4.2.2"
+      sources."urix-0.1.0"
+      (sources."url-0.11.0" // {
+        dependencies = [
+          sources."punycode-1.3.2"
+        ];
+      })
+      sources."url-parse-lax-3.0.0"
+      sources."url-to-options-1.0.1"
+      sources."use-3.1.1"
+      sources."util-0.10.4"
+      sources."util-deprecate-1.0.2"
+      sources."util.promisify-1.0.0"
+      sources."v8-compile-cache-2.0.2"
+      sources."validate-npm-package-license-3.0.4"
+      sources."vinyl-2.2.0"
+      sources."vm-browserify-0.0.4"
+      sources."watchpack-1.6.0"
+      sources."wcwidth-1.0.1"
+      (sources."webpack-4.25.1" // {
+        dependencies = [
+          sources."arr-diff-4.0.0"
+          sources."array-unique-0.3.2"
+          sources."braces-2.3.2"
+          sources."debug-2.6.9"
+          sources."define-property-1.0.0"
+          sources."eslint-scope-4.0.0"
+          (sources."expand-brackets-2.1.4" // {
+            dependencies = [
+              sources."define-property-0.2.5"
+            ];
+          })
+          sources."extend-shallow-2.0.1"
+          sources."extglob-2.0.4"
+          sources."fill-range-4.0.0"
+          (sources."is-accessor-descriptor-0.1.6" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          (sources."is-data-descriptor-0.1.4" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          (sources."is-descriptor-0.1.6" // {
+            dependencies = [
+              sources."kind-of-5.1.0"
+            ];
+          })
+          (sources."is-number-3.0.0" // {
+            dependencies = [
+              sources."kind-of-3.2.2"
+            ];
+          })
+          sources."isobject-3.0.1"
+          sources."kind-of-6.0.2"
+          sources."micromatch-3.1.10"
+          sources."ms-2.0.0"
+        ];
+      })
+      (sources."webpack-cli-3.1.2" // {
+        dependencies = [
+          sources."supports-color-5.5.0"
+        ];
+      })
+      (sources."webpack-core-0.6.9" // {
+        dependencies = [
+          sources."source-map-0.4.4"
+        ];
+      })
+      (sources."webpack-sources-1.3.0" // {
+        dependencies = [
+          sources."source-list-map-2.0.1"
+          sources."source-map-0.6.1"
+        ];
+      })
+      sources."which-1.3.1"
+      sources."which-module-2.0.0"
+      (sources."which-promise-1.0.0" // {
+        dependencies = [
+          sources."pinkie-1.0.0"
+          sources."pinkie-promise-1.0.0"
+        ];
+      })
+      sources."worker-farm-1.6.0"
+      (sources."wrap-ansi-2.1.0" // {
+        dependencies = [
+          sources."string-width-1.0.2"
+        ];
+      })
+      sources."wrappy-1.0.2"
+      sources."xtend-4.0.1"
+      sources."y18n-4.0.0"
+      sources."yallist-2.1.2"
+      (sources."yargs-12.0.4" // {
+        dependencies = [
+          sources."find-up-3.0.0"
+          sources."locate-path-3.0.0"
+          sources."p-limit-2.0.0"
+          sources."p-locate-3.0.0"
+          sources."p-try-2.0.0"
+        ];
+      })
+      sources."yargs-parser-11.1.0"
+      sources."yauzl-2.10.0"
+    ];
+    buildInputs = globalBuildInputs;
+    meta = {
+    };
+    production = true;
+    bypassCache = true;
+  };
   madoko = nodeEnv.buildNodePackage {
     name = "madoko";
     packageName = "madoko";
@@ -47789,14 +50879,14 @@ in
           sources."readable-stream-2.3.6"
           sources."source-map-0.6.1"
           sources."string_decoder-1.1.1"
-          sources."through2-2.0.3"
+          sources."through2-2.0.5"
         ];
       })
       (sources."@gulp-sourcemaps/map-sources-1.0.0" // {
         dependencies = [
           sources."readable-stream-2.3.6"
           sources."string_decoder-1.1.1"
-          sources."through2-2.0.3"
+          sources."through2-2.0.5"
         ];
       })
       (sources."accord-0.29.0" // {
@@ -48012,7 +51102,7 @@ in
           sources."graceful-fs-4.1.15"
           sources."readable-stream-2.3.6"
           sources."string_decoder-1.1.1"
-          sources."through2-2.0.3"
+          sources."through2-2.0.5"
         ];
       })
       sources."fs.realpath-1.0.0"
@@ -48055,7 +51145,7 @@ in
           sources."plugin-error-0.1.2"
           sources."readable-stream-2.3.6"
           sources."string_decoder-1.1.1"
-          sources."through2-2.0.3"
+          sources."through2-2.0.5"
         ];
       })
       (sources."gulp-sourcemaps-2.6.4" // {
@@ -48064,7 +51154,7 @@ in
           sources."readable-stream-2.3.6"
           sources."source-map-0.6.1"
           sources."string_decoder-1.1.1"
-          sources."through2-2.0.3"
+          sources."through2-2.0.5"
         ];
       })
       (sources."gulp-typescript-5.0.0-alpha.3" // {
@@ -48080,7 +51170,7 @@ in
           sources."readable-stream-2.3.6"
           sources."source-map-0.7.3"
           sources."string_decoder-1.1.1"
-          sources."through2-2.0.3"
+          sources."through2-2.0.5"
           sources."unique-stream-2.2.1"
           sources."vinyl-2.2.0"
           sources."vinyl-fs-3.0.3"
@@ -48091,7 +51181,7 @@ in
           sources."lodash-4.17.11"
           sources."readable-stream-2.3.6"
           sources."string_decoder-1.1.1"
-          sources."through2-2.0.3"
+          sources."through2-2.0.5"
         ];
       })
       (sources."gulp-util-3.0.8" // {
@@ -48100,7 +51190,7 @@ in
           sources."readable-stream-2.3.6"
           sources."replace-ext-0.0.1"
           sources."string_decoder-1.1.1"
-          sources."through2-2.0.3"
+          sources."through2-2.0.5"
           sources."vinyl-0.5.3"
         ];
       })
@@ -48295,7 +51385,7 @@ in
         dependencies = [
           sources."readable-stream-2.3.6"
           sources."string_decoder-1.1.1"
-          sources."through2-2.0.3"
+          sources."through2-2.0.5"
         ];
       })
       sources."remove-trailing-separator-1.1.0"
@@ -48383,7 +51473,7 @@ in
         dependencies = [
           sources."readable-stream-2.3.6"
           sources."string_decoder-1.1.1"
-          sources."through2-2.0.3"
+          sources."through2-2.0.5"
         ];
       })
       sources."tildify-1.2.0"
@@ -48401,7 +51491,7 @@ in
         dependencies = [
           sources."readable-stream-2.3.6"
           sources."string_decoder-1.1.1"
-          sources."through2-2.0.3"
+          sources."through2-2.0.5"
         ];
       })
       sources."tough-cookie-2.4.3"
@@ -49240,7 +52330,7 @@ in
       sources."string_decoder-1.1.1"
       sources."strip-ansi-3.0.1"
       sources."strip-json-comments-2.0.1"
-      sources."tar-4.4.7"
+      sources."tar-4.4.8"
       sources."util-deprecate-1.0.2"
       sources."wide-align-1.1.3"
       sources."wrappy-1.0.2"
@@ -49980,7 +53070,7 @@ in
       sources."stream-shift-1.0.0"
       sources."streamsearch-0.1.2"
       sources."string_decoder-1.1.1"
-      (sources."through2-2.0.3" // {
+      (sources."through2-2.0.5" // {
         dependencies = [
           sources."readable-stream-2.3.6"
         ];
@@ -50368,7 +53458,7 @@ in
       sources."ansi-regex-2.1.1"
       sources."ansi-styles-2.2.1"
       sources."argparse-1.0.10"
-      sources."bluebird-3.5.2"
+      sources."bluebird-3.5.3"
       (sources."boxen-1.3.0" // {
         dependencies = [
           sources."ansi-styles-3.2.1"
@@ -50718,7 +53808,7 @@ in
           sources."string_decoder-1.1.1"
         ];
       })
-      sources."bluebird-3.5.2"
+      sources."bluebird-3.5.3"
       (sources."body-parser-1.18.3" // {
         dependencies = [
           sources."content-type-1.0.4"
@@ -51862,10 +54952,10 @@ in
   pnpm = nodeEnv.buildNodePackage {
     name = "pnpm";
     packageName = "pnpm";
-    version = "2.17.7";
+    version = "2.17.8";
     src = fetchurl {
-      url = "https://registry.npmjs.org/pnpm/-/pnpm-2.17.7.tgz";
-      sha512 = "FwZFpKSL4BNu1IGIScveHqZALpm6jSF7QR90CZXW4RfKaLpNYcIkkFC9iPBT4AdpPSv1UR/gYUWyQdTZBx2a5g==";
+      url = "https://registry.npmjs.org/pnpm/-/pnpm-2.17.8.tgz";
+      sha512 = "Lfqyq7foOu0HTHhimOAOmgDwN5uH1e4VwfyRnTJgalhVC317QL9y1df6jHATGf0Vy3uhW3AAt4JMuX48wDeFlg==";
     };
     buildInputs = globalBuildInputs;
     meta = {
@@ -51879,10 +54969,10 @@ in
   prettier = nodeEnv.buildNodePackage {
     name = "prettier";
     packageName = "prettier";
-    version = "1.14.3";
+    version = "1.15.2";
     src = fetchurl {
-      url = "https://registry.npmjs.org/prettier/-/prettier-1.14.3.tgz";
-      sha512 = "qZDVnCrnpsRJJq5nSsiHCE3BYMED2OtsI+cmzIzF1QIfqm5ALf8tEJcO27zV1gKNKRPdhjO0dNWnrzssDQ1tFg==";
+      url = "https://registry.npmjs.org/prettier/-/prettier-1.15.2.tgz";
+      sha512 = "YgPLFFA0CdKL4Eg2IHtUSjzj/BWgszDHiNQAe0VAIBse34148whfdzLagRL+QiKS+YfK5ftB6X4v/MBw8yCoug==";
     };
     buildInputs = globalBuildInputs;
     meta = {
@@ -51977,7 +55067,7 @@ in
       sources."buffer-xor-1.0.3"
       sources."builtin-status-codes-3.0.0"
       sources."cache-base-1.0.1"
-      sources."cached-path-relative-1.0.1"
+      sources."cached-path-relative-1.0.2"
       sources."chokidar-2.0.4"
       sources."cipher-base-1.0.4"
       (sources."class-utils-0.3.6" // {
@@ -52302,7 +55392,7 @@ in
         ];
       })
       sources."through-2.3.8"
-      sources."through2-2.0.3"
+      sources."through2-2.0.5"
       sources."timers-browserify-1.4.2"
       sources."to-arraybuffer-1.0.1"
       (sources."to-object-path-0.3.0" // {
@@ -52934,7 +56024,7 @@ in
     };
     dependencies = [
       sources."abstract-leveldown-4.0.3"
-      (sources."aligned-block-file-1.1.3" // {
+      (sources."aligned-block-file-1.1.4" // {
         dependencies = [
           sources."obv-0.0.0"
         ];
@@ -53606,7 +56696,7 @@ in
         ];
       })
       sources."sodium-chloride-1.1.2"
-      sources."sodium-native-2.2.2"
+      sources."sodium-native-2.2.3"
       sources."source-map-0.5.7"
       sources."source-map-resolve-0.5.2"
       sources."source-map-url-0.4.0"
@@ -54708,10 +57798,10 @@ in
   snyk = nodeEnv.buildNodePackage {
     name = "snyk";
     packageName = "snyk";
-    version = "1.108.0";
+    version = "1.108.2";
     src = fetchurl {
-      url = "https://registry.npmjs.org/snyk/-/snyk-1.108.0.tgz";
-      sha512 = "QKeERkklW4DFyd49sqbwZ4xNYXtHOPCcUjNUzDfcvXzNwyxfRKhTf43nmPw6lnIcgBesrY95hMozos4WmgYl3w==";
+      url = "https://registry.npmjs.org/snyk/-/snyk-1.108.2.tgz";
+      sha512 = "VfSHSRj4ISWf4EfySTdAVqUWnDspoFUaGs4uGp7FIbjZb35+JPaQ/hqgWKcDal+ZwTtzQvxKAdPsB3WUCBoSKg==";
     };
     dependencies = [
       sources."@yarnpkg/lockfile-1.1.0"
@@ -54911,9 +58001,9 @@ in
       sources."signal-exit-3.0.2"
       sources."smart-buffer-1.1.15"
       sources."snyk-config-2.2.0"
-      sources."snyk-docker-plugin-1.12.1"
+      sources."snyk-docker-plugin-1.12.2"
       sources."snyk-go-plugin-1.6.0"
-      sources."snyk-gradle-plugin-2.1.0"
+      sources."snyk-gradle-plugin-2.1.1"
       sources."snyk-module-1.9.1"
       sources."snyk-mvn-plugin-2.0.0"
       (sources."snyk-nodejs-lockfile-parser-1.7.0" // {
@@ -55519,6 +58609,7 @@ in
           sources."mkdirp-0.3.0"
         ];
       })
+      sources."js-string-escape-1.0.1"
       sources."js-yaml-3.12.0"
       sources."json-refs-2.1.7"
       (sources."json-schema-deref-sync-0.3.4" // {
@@ -55793,7 +58884,7 @@ in
       sources."supports-color-2.0.0"
       sources."swagger-converter-0.2.0"
       sources."swagger-editor-2.10.5"
-      sources."swagger-test-templates-1.5.0"
+      sources."swagger-test-templates-1.5.1"
       (sources."swagger-tools-0.9.16" // {
         dependencies = [
           sources."swagger-converter-0.1.7"
@@ -55858,7 +58949,7 @@ in
       sources."util-deprecate-1.0.2"
       sources."utils-merge-1.0.1"
       sources."valid-url-1.0.9"
-      sources."validator-10.8.0"
+      sources."validator-10.9.0"
       sources."which-1.3.1"
       sources."widest-line-2.0.1"
       sources."wordwrap-0.0.3"
@@ -55881,13 +58972,15 @@ in
   tern = nodeEnv.buildNodePackage {
     name = "tern";
     packageName = "tern";
-    version = "0.22.3";
+    version = "0.23.0";
     src = fetchurl {
-      url = "https://registry.npmjs.org/tern/-/tern-0.22.3.tgz";
-      sha512 = "A2C8GbR6uJWjHUwxtxF14oY1g8oJDEhM+n9ugRowX+jr8JHgNUeOLrYTOi/LV/JK9KHpxnYwyuhnal9YDXeeDQ==";
+      url = "https://registry.npmjs.org/tern/-/tern-0.23.0.tgz";
+      sha512 = "lST8jq/DougDUADb+vBaufwjqNChwABSJTkWf+5GG4xNVJoR/atEaMe/G7buaVZrpGCy+zoaq1TuycQy8xX+Bg==";
     };
     dependencies = [
-      sources."acorn-5.7.3"
+      sources."acorn-6.0.4"
+      sources."acorn-loose-6.0.0"
+      sources."acorn-walk-6.1.0"
       sources."balanced-match-1.0.0"
       sources."brace-expansion-1.1.11"
       sources."concat-map-0.0.1"
@@ -56000,7 +59093,7 @@ in
       })
       sources."forever-agent-0.6.1"
       sources."form-data-2.3.3"
-      sources."fs-extra-7.0.0"
+      sources."fs-extra-7.0.1"
       sources."getpass-0.1.7"
       sources."graceful-fs-4.1.15"
       sources."har-schema-2.0.0"
@@ -56319,7 +59412,7 @@ in
       sources."array-uniq-1.0.3"
       sources."asynckit-0.4.0"
       sources."balanced-match-1.0.0"
-      sources."bluebird-3.5.2"
+      sources."bluebird-3.5.3"
       (sources."boxen-1.3.0" // {
         dependencies = [
           sources."ansi-styles-3.2.1"
@@ -56575,7 +59668,7 @@ in
       sources."bcrypt-pbkdf-1.0.2"
       sources."better-assert-1.0.2"
       sources."blob-0.0.5"
-      sources."bluebird-3.5.2"
+      sources."bluebird-3.5.3"
       sources."blueimp-md5-2.10.0"
       sources."body-parser-1.18.3"
       sources."brace-expansion-1.1.11"
@@ -56584,7 +59677,7 @@ in
       sources."builtins-1.0.3"
       sources."bytes-3.0.0"
       sources."callsite-1.0.0"
-      sources."camelcase-4.1.0"
+      sources."camelcase-5.0.0"
       sources."caseless-0.12.0"
       (sources."cliui-4.1.0" // {
         dependencies = [
@@ -56628,7 +59721,7 @@ in
       sources."cycle-1.0.3"
       sources."dashdash-1.14.1"
       sources."debug-2.6.9"
-      sources."decamelize-2.0.0"
+      sources."decamelize-1.2.0"
       sources."deep-extend-0.6.0"
       sources."delayed-stream-0.0.5"
       sources."delegates-1.0.0"
@@ -56954,10 +60047,9 @@ in
       sources."wrappy-1.0.2"
       sources."ws-3.3.3"
       sources."xmlhttprequest-ssl-1.5.5"
-      sources."xregexp-4.0.0"
       sources."y18n-4.0.0"
       sources."yallist-2.1.2"
-      (sources."yargs-12.0.2" // {
+      (sources."yargs-12.0.4" // {
         dependencies = [
           sources."ansi-regex-3.0.0"
           sources."is-fullwidth-code-point-2.0.0"
@@ -56965,7 +60057,7 @@ in
           sources."strip-ansi-4.0.0"
         ];
       })
-      sources."yargs-parser-10.1.0"
+      sources."yargs-parser-11.1.0"
       sources."yeast-0.1.2"
     ];
     buildInputs = globalBuildInputs;
@@ -57012,7 +60104,7 @@ in
       sources."base64-js-0.0.8"
       sources."bcrypt-pbkdf-1.0.2"
       sources."bl-1.2.2"
-      sources."bluebird-3.5.2"
+      sources."bluebird-3.5.3"
       sources."brace-expansion-1.1.11"
       sources."buffer-3.6.0"
       sources."buffer-alloc-1.2.0"
@@ -57270,7 +60362,7 @@ in
       sources."@akryum/winattr-3.0.0"
       sources."@apollographql/apollo-upload-server-5.0.3"
       sources."@apollographql/graphql-playground-html-1.6.4"
-      sources."@babel/runtime-corejs2-7.1.2"
+      sources."@babel/runtime-corejs2-7.1.5"
       sources."@mrmlnc/readdir-enhanced-2.2.1"
       sources."@nodelib/fs.stat-1.1.3"
       sources."@protobufjs/aspromise-1.1.2"
@@ -57293,10 +60385,10 @@ in
       sources."@types/express-serve-static-core-4.16.0"
       sources."@types/long-4.0.0"
       sources."@types/mime-2.0.0"
-      sources."@types/node-10.12.2"
+      sources."@types/node-10.12.5"
       sources."@types/range-parser-1.2.2"
       sources."@types/serve-static-1.13.2"
-      sources."@types/ws-5.1.2"
+      sources."@types/ws-6.0.1"
       sources."@types/zen-observable-0.8.0"
       sources."@vue/cli-shared-utils-3.1.1"
       (sources."@vue/cli-ui-3.1.1" // {
@@ -57316,12 +60408,12 @@ in
       sources."ansi-styles-3.2.1"
       sources."anymatch-2.0.0"
       sources."apollo-cache-1.1.20"
-      sources."apollo-cache-control-0.2.5"
+      sources."apollo-cache-control-0.3.0"
       sources."apollo-cache-inmemory-1.3.9"
       sources."apollo-client-2.4.5"
-      sources."apollo-datasource-0.1.3"
-      sources."apollo-engine-reporting-0.0.6"
-      sources."apollo-engine-reporting-protobuf-0.0.1"
+      sources."apollo-datasource-0.2.0"
+      sources."apollo-engine-reporting-0.1.0"
+      sources."apollo-engine-reporting-protobuf-0.1.0"
       sources."apollo-link-1.2.3"
       sources."apollo-link-context-1.0.9"
       sources."apollo-link-dedup-1.0.10"
@@ -57329,20 +60421,13 @@ in
       sources."apollo-link-persisted-queries-0.2.1"
       sources."apollo-link-state-0.4.2"
       sources."apollo-link-ws-1.0.9"
-      sources."apollo-server-caching-0.1.2"
-      (sources."apollo-server-core-2.1.0" // {
-        dependencies = [
-          sources."graphql-subscriptions-0.5.8"
-        ];
-      })
-      sources."apollo-server-env-2.0.3"
-      sources."apollo-server-errors-2.0.2"
-      (sources."apollo-server-express-2.1.0" // {
-        dependencies = [
-          sources."graphql-subscriptions-0.5.8"
-        ];
-      })
-      sources."apollo-tracing-0.2.5"
+      sources."apollo-server-caching-0.2.0"
+      sources."apollo-server-core-2.2.0"
+      sources."apollo-server-env-2.2.0"
+      sources."apollo-server-errors-2.2.0"
+      sources."apollo-server-express-2.2.0"
+      sources."apollo-server-plugin-base-0.1.0"
+      sources."apollo-tracing-0.3.0"
       sources."apollo-upload-client-9.1.0"
       sources."apollo-utilities-1.0.25"
       sources."argparse-1.0.10"
@@ -57641,10 +60726,10 @@ in
       sources."graceful-readlink-1.0.1"
       sources."graphql-14.0.2"
       sources."graphql-anywhere-4.1.22"
-      sources."graphql-extensions-0.2.1"
+      sources."graphql-extensions-0.3.0"
       sources."graphql-subscriptions-1.0.0"
       sources."graphql-tag-2.10.0"
-      sources."graphql-tools-3.1.1"
+      sources."graphql-tools-4.0.3"
       sources."graphql-type-json-0.2.1"
       sources."growly-1.3.0"
       sources."har-schema-2.0.0"
@@ -57730,6 +60815,7 @@ in
       sources."jsbn-0.1.1"
       sources."json-schema-0.2.3"
       sources."json-schema-traverse-0.3.1"
+      sources."json-stable-stringify-1.0.1"
       sources."json-stringify-safe-5.0.1"
       sources."jsonfile-4.0.0"
       sources."jsonify-0.0.0"
@@ -58019,7 +61105,11 @@ in
       sources."strip-eof-1.0.0"
       sources."strip-json-comments-2.0.1"
       sources."strip-outer-1.0.1"
-      sources."subscriptions-transport-ws-0.9.15"
+      (sources."subscriptions-transport-ws-0.9.15" // {
+        dependencies = [
+          sources."ws-5.2.2"
+        ];
+      })
       sources."supports-color-5.5.0"
       sources."symbol-observable-1.2.0"
       sources."tar-stream-1.6.2"
@@ -58041,7 +61131,7 @@ in
       })
       sources."terminate-2.1.0"
       sources."through-2.3.8"
-      sources."through2-2.0.3"
+      sources."through2-2.0.5"
       sources."timed-out-4.0.1"
       sources."tiny-emitter-2.0.2"
       sources."tmp-0.0.33"
@@ -58060,7 +61150,7 @@ in
       sources."to-regex-range-2.1.1"
       (sources."topo-3.0.3" // {
         dependencies = [
-          sources."hoek-6.0.1"
+          sources."hoek-6.0.2"
         ];
       })
       sources."touch-3.1.0"
@@ -58113,14 +61203,14 @@ in
       sources."validate-npm-package-name-3.0.0"
       sources."vary-1.1.2"
       sources."verror-1.10.0"
-      sources."vue-cli-plugin-apollo-0.17.3"
+      sources."vue-cli-plugin-apollo-0.17.4"
       sources."watch-1.0.2"
       sources."wcwidth-1.0.1"
       sources."which-1.3.1"
       sources."widest-line-2.0.1"
       sources."wrappy-1.0.2"
       sources."write-file-atomic-2.3.0"
-      sources."ws-5.2.2"
+      sources."ws-6.1.0"
       sources."xdg-basedir-3.0.0"
       sources."xml2js-0.4.19"
       sources."xmlbuilder-9.0.7"
@@ -58263,11 +61353,11 @@ in
     };
     dependencies = [
       sources."@babel/code-frame-7.0.0"
-      sources."@babel/generator-7.1.3"
+      sources."@babel/generator-7.1.5"
       sources."@babel/highlight-7.0.0"
-      sources."@babel/parser-7.1.3"
+      sources."@babel/parser-7.1.5"
       sources."@babel/template-7.1.2"
-      sources."@babel/types-7.1.3"
+      sources."@babel/types-7.1.5"
       sources."@webassemblyjs/ast-1.7.11"
       sources."@webassemblyjs/floating-point-hex-parser-1.7.11"
       sources."@webassemblyjs/helper-api-error-1.7.11"
@@ -58292,7 +61382,7 @@ in
       sources."esutils-2.0.2"
       sources."has-flag-3.0.0"
       sources."js-tokens-4.0.0"
-      sources."jsesc-2.5.1"
+      sources."jsesc-2.5.2"
       sources."lodash-4.17.11"
       sources."source-map-0.5.7"
       sources."supports-color-5.5.0"
@@ -58557,7 +61647,7 @@ in
       sources."base64-js-1.3.0"
       sources."big.js-3.2.0"
       sources."binary-extensions-1.12.0"
-      sources."bluebird-3.5.2"
+      sources."bluebird-3.5.3"
       sources."bn.js-4.11.8"
       sources."brace-expansion-1.1.11"
       (sources."braces-2.3.2" // {
@@ -58881,7 +61971,7 @@ in
       sources."stream-shift-1.0.0"
       sources."string_decoder-1.1.1"
       sources."tapable-1.1.0"
-      sources."through2-2.0.3"
+      sources."through2-2.0.5"
       sources."timers-browserify-2.0.10"
       sources."to-arraybuffer-1.0.1"
       (sources."to-object-path-0.3.0" // {
@@ -59263,15 +62353,21 @@ in
   web-ext = nodeEnv.buildNodePackage {
     name = "web-ext";
     packageName = "web-ext";
-    version = "2.9.1";
+    version = "2.9.2";
     src = fetchurl {
-      url = "https://registry.npmjs.org/web-ext/-/web-ext-2.9.1.tgz";
-      sha512 = "sK5ebAiUNJFG+KfFjjvWks9ihecy0TdVCrrnSW/tZ15QFO6u4LCIQKCuBr7FyGMjC+IOGJFB7pS1ZbyPNJ72GQ==";
+      url = "https://registry.npmjs.org/web-ext/-/web-ext-2.9.2.tgz";
+      sha512 = "eJYKR7BMlpWXSeOP91LvsQkLHKcRE8wWkQYdlEkHzntASlFMbGZcIk6/R5myA/Yo5E87WWoCmqKO9rdUSVtQMA==";
     };
     dependencies = [
+      sources."@babel/polyfill-7.0.0"
+      (sources."@babel/register-7.0.0" // {
+        dependencies = [
+          sources."source-map-support-0.5.9"
+        ];
+      })
       sources."@cliqz-oss/firefox-client-0.3.1"
       sources."@cliqz-oss/node-firefox-connect-1.2.1"
-      sources."@types/node-10.12.2"
+      sources."@types/node-10.12.5"
       sources."@yarnpkg/lockfile-1.1.0"
       sources."JSONSelect-0.2.1"
       sources."abbrev-1.1.1"
@@ -59284,31 +62380,27 @@ in
       sources."adbkit-2.11.0"
       sources."adbkit-logcat-1.1.0"
       sources."adbkit-monkey-1.0.1"
-      (sources."addons-linter-1.3.1" // {
+      (sources."addons-linter-1.3.8" // {
         dependencies = [
-          sources."cross-spawn-5.1.0"
-          sources."execa-0.7.0"
-          sources."invert-kv-1.0.0"
-          sources."lcid-1.0.0"
-          sources."mem-1.1.0"
-          sources."source-map-0.6.1"
+          sources."find-up-3.0.0"
+          sources."locate-path-3.0.0"
+          sources."p-limit-2.0.0"
+          sources."p-locate-3.0.0"
+          sources."p-try-2.0.0"
           sources."source-map-support-0.5.6"
-          (sources."yargs-12.0.1" // {
-            dependencies = [
-              sources."os-locale-2.1.0"
-            ];
-          })
+          sources."yargs-12.0.2"
+          sources."yargs-parser-10.1.0"
         ];
       })
       sources."adm-zip-0.4.11"
       sources."agent-base-4.2.1"
-      sources."ajv-6.5.2"
+      sources."ajv-6.5.4"
       sources."ajv-keywords-3.2.0"
       sources."ajv-merge-patch-4.1.0"
       sources."ansi-align-2.0.0"
       sources."ansi-escapes-3.1.0"
       sources."ansi-regex-2.1.1"
-      sources."ansi-styles-2.2.1"
+      sources."ansi-styles-3.2.1"
       sources."ansicolors-0.3.2"
       sources."any-promise-1.3.0"
       sources."anymatch-2.0.0"
@@ -59350,28 +62442,17 @@ in
       sources."aws4-1.8.0"
       (sources."babel-code-frame-6.26.0" // {
         dependencies = [
+          sources."ansi-styles-2.2.1"
           sources."chalk-1.1.3"
+          sources."supports-color-2.0.0"
         ];
       })
-      sources."babel-core-6.26.3"
-      sources."babel-generator-6.26.1"
-      sources."babel-helpers-6.24.1"
-      sources."babel-messages-6.23.0"
       (sources."babel-polyfill-6.26.0" // {
         dependencies = [
           sources."regenerator-runtime-0.10.5"
         ];
       })
-      (sources."babel-register-6.26.0" // {
-        dependencies = [
-          sources."source-map-support-0.4.18"
-        ];
-      })
       sources."babel-runtime-6.26.0"
-      sources."babel-template-6.26.0"
-      sources."babel-traverse-6.26.0"
-      sources."babel-types-6.26.0"
-      sources."babylon-6.18.0"
       sources."balanced-match-1.0.0"
       (sources."base-0.11.2" // {
         dependencies = [
@@ -59411,12 +62492,7 @@ in
       sources."camelcase-4.1.0"
       sources."capture-stack-trace-1.0.1"
       sources."caseless-0.12.0"
-      (sources."chalk-2.4.0" // {
-        dependencies = [
-          sources."ansi-styles-3.2.1"
-          sources."supports-color-5.5.0"
-        ];
-      })
+      sources."chalk-2.4.0"
       sources."chardet-0.4.2"
       sources."cheerio-1.0.0-rc.2"
       sources."chokidar-2.0.4"
@@ -59459,6 +62535,7 @@ in
       sources."combined-stream-1.0.7"
       sources."commander-2.19.0"
       sources."common-tags-1.8.0"
+      sources."commondir-1.0.1"
       sources."component-emitter-1.2.1"
       (sources."compress-commons-1.2.2" // {
         dependencies = [
@@ -59472,7 +62549,6 @@ in
         ];
       })
       sources."configstore-3.1.2"
-      sources."convert-source-map-1.6.0"
       sources."copy-descriptor-0.1.1"
       sources."core-js-2.5.7"
       sources."core-util-is-1.0.2"
@@ -59503,21 +62579,26 @@ in
       sources."deep-extend-0.6.0"
       sources."deep-is-0.1.3"
       sources."deepcopy-0.6.3"
-      sources."deepmerge-2.1.1"
+      sources."deepmerge-2.2.1"
       sources."defaults-1.0.3"
       sources."define-properties-1.1.3"
       sources."define-property-2.0.2"
       sources."degenerator-1.0.4"
-      sources."del-2.2.2"
+      sources."del-3.0.0"
       sources."delayed-stream-1.0.0"
       sources."depd-1.1.2"
-      sources."detect-indent-4.0.0"
-      (sources."dispensary-0.22.0" // {
+      (sources."dispensary-0.26.0" // {
         dependencies = [
           sources."async-2.6.1"
-          sources."source-map-0.6.1"
+          sources."decamelize-1.2.0"
+          sources."find-up-3.0.0"
+          sources."locate-path-3.0.0"
+          sources."p-limit-2.0.0"
+          sources."p-locate-3.0.0"
+          sources."p-try-2.0.0"
+          sources."pino-5.8.1"
           sources."source-map-support-0.5.9"
-          sources."yargs-12.0.2"
+          sources."yargs-12.0.4"
         ];
       })
       sources."doctrine-2.1.0"
@@ -59555,17 +62636,12 @@ in
       sources."es6-symbol-3.1.1"
       sources."es6-weak-map-2.0.2"
       sources."escape-string-regexp-1.0.5"
-      (sources."escodegen-1.11.0" // {
-        dependencies = [
-          sources."source-map-0.6.1"
-        ];
-      })
+      sources."escodegen-1.11.0"
       sources."escope-3.6.0"
       (sources."eslint-5.0.1" // {
         dependencies = [
           sources."ansi-regex-3.0.0"
           sources."debug-3.2.6"
-          sources."globals-11.8.0"
           sources."ms-2.1.1"
           sources."strip-ansi-4.0.0"
         ];
@@ -59576,11 +62652,13 @@ in
           sources."ajv-keywords-1.5.1"
           sources."ansi-escapes-1.4.0"
           sources."ansi-regex-3.0.0"
+          sources."ansi-styles-2.2.1"
           sources."chalk-1.1.3"
           sources."cli-cursor-1.0.2"
           sources."eslint-3.19.0"
           sources."espree-3.5.4"
           sources."figures-1.7.0"
+          sources."globals-9.18.0"
           sources."inquirer-0.12.0"
           sources."is-fullwidth-code-point-2.0.0"
           sources."onetime-1.1.0"
@@ -59592,6 +62670,7 @@ in
           sources."slice-ansi-0.0.4"
           sources."string-width-1.0.2"
           sources."strip-ansi-4.0.0"
+          sources."supports-color-2.0.0"
           (sources."table-3.8.3" // {
             dependencies = [
               sources."string-width-2.1.1"
@@ -59663,7 +62742,8 @@ in
           sources."extend-shallow-2.0.1"
         ];
       })
-      sources."find-up-3.0.0"
+      sources."find-cache-dir-1.0.0"
+      sources."find-up-2.1.0"
       (sources."firefox-profile-1.2.0" // {
         dependencies = [
           sources."async-2.5.0"
@@ -59674,7 +62754,7 @@ in
           sources."readable-stream-2.3.6"
         ];
       })
-      sources."flat-cache-1.3.0"
+      sources."flat-cache-1.3.2"
       sources."flatstr-1.0.8"
       sources."fluent-syntax-0.7.0"
       sources."for-in-1.0.2"
@@ -59721,15 +62801,19 @@ in
           sources."shelljs-0.7.7"
         ];
       })
-      sources."glob-7.1.2"
+      sources."glob-7.1.3"
       (sources."glob-parent-3.1.0" // {
         dependencies = [
           sources."is-glob-3.1.0"
         ];
       })
       sources."global-dirs-0.1.1"
-      sources."globals-9.18.0"
-      sources."globby-5.0.0"
+      sources."globals-11.8.0"
+      (sources."globby-6.1.0" // {
+        dependencies = [
+          sources."pify-2.3.0"
+        ];
+      })
       sources."got-6.7.1"
       sources."graceful-fs-4.1.15"
       sources."graceful-readlink-1.0.1"
@@ -59759,7 +62843,7 @@ in
           sources."async-1.5.2"
         ];
       })
-      sources."home-or-tmp-2.0.0"
+      sources."home-or-tmp-3.0.0"
       sources."hosted-git-info-2.7.1"
       sources."htmlparser2-3.10.0"
       sources."http-errors-1.6.3"
@@ -59791,7 +62875,6 @@ in
         ];
       })
       sources."interpret-1.1.0"
-      sources."invariant-2.2.4"
       sources."invert-kv-2.0.0"
       sources."ip-1.1.5"
       sources."is-absolute-0.1.7"
@@ -59818,7 +62901,6 @@ in
       })
       sources."is-extendable-0.1.1"
       sources."is-extglob-2.1.1"
-      sources."is-finite-1.0.2"
       sources."is-fullwidth-code-point-1.0.0"
       sources."is-glob-4.0.0"
       sources."is-installed-globally-0.1.0"
@@ -59859,7 +62941,6 @@ in
         ];
       })
       sources."jsbn-0.1.1"
-      sources."jsesc-1.3.0"
       sources."json-merge-patch-0.2.3"
       sources."json-parse-better-errors-1.0.2"
       sources."json-schema-0.2.3"
@@ -59867,7 +62948,6 @@ in
       sources."json-stable-stringify-1.0.1"
       sources."json-stable-stringify-without-jsonify-1.0.1"
       sources."json-stringify-safe-5.0.1"
-      sources."json5-0.5.1"
       sources."jsonfile-4.0.0"
       sources."jsonify-0.0.0"
       sources."jsonpointer-4.0.1"
@@ -59902,10 +62982,11 @@ in
       (sources."load-json-file-1.1.0" // {
         dependencies = [
           sources."parse-json-2.2.0"
+          sources."pify-2.3.0"
           sources."strip-bom-2.0.0"
         ];
       })
-      sources."locate-path-3.0.0"
+      sources."locate-path-2.0.0"
       sources."lodash-4.17.11"
       sources."lodash.assign-4.2.0"
       sources."lodash.assignin-4.2.0"
@@ -59923,18 +63004,14 @@ in
       sources."lodash.once-4.1.1"
       sources."lodash.set-4.3.2"
       sources."lodash.sortby-4.7.0"
-      sources."loose-envify-1.4.0"
       sources."lowercase-keys-1.0.1"
       sources."lru-cache-4.1.3"
       sources."macos-release-1.1.0"
-      (sources."make-dir-1.3.0" // {
-        dependencies = [
-          sources."pify-3.0.0"
-        ];
-      })
+      sources."make-dir-1.3.0"
+      sources."map-age-cleaner-0.1.2"
       sources."map-cache-0.2.2"
       sources."map-visit-1.0.0"
-      sources."mem-3.0.1"
+      sources."mem-4.0.0"
       (sources."micromatch-3.1.10" // {
         dependencies = [
           sources."kind-of-6.0.2"
@@ -60000,6 +63077,7 @@ in
       sources."next-tick-1.0.0"
       sources."nice-try-1.0.5"
       sources."node-forge-0.7.6"
+      sources."node-modules-regexp-1.0.0"
       sources."node-notifier-5.2.1"
       (sources."nomnom-1.8.1" // {
         dependencies = [
@@ -60035,15 +63113,17 @@ in
       sources."opn-5.3.0"
       sources."optionator-0.8.2"
       sources."os-homedir-1.0.2"
-      sources."os-locale-3.0.0"
+      sources."os-locale-3.0.1"
       sources."os-name-2.0.1"
       sources."os-shim-0.1.3"
       sources."os-tmpdir-1.0.2"
+      sources."p-defer-1.0.0"
       sources."p-finally-1.0.0"
       sources."p-is-promise-1.1.0"
-      sources."p-limit-2.0.0"
-      sources."p-locate-3.0.0"
-      sources."p-try-2.0.0"
+      sources."p-limit-1.3.0"
+      sources."p-locate-2.0.0"
+      sources."p-map-1.2.0"
+      sources."p-try-1.0.0"
       (sources."pac-proxy-agent-2.0.2" // {
         dependencies = [
           sources."debug-3.2.6"
@@ -60063,28 +63143,30 @@ in
       sources."path-is-inside-1.0.2"
       sources."path-key-2.0.1"
       sources."path-parse-1.0.6"
-      sources."path-type-1.1.0"
+      (sources."path-type-1.1.0" // {
+        dependencies = [
+          sources."pify-2.3.0"
+        ];
+      })
       sources."pend-1.2.0"
       sources."performance-now-2.1.0"
-      sources."pify-2.3.0"
+      sources."pify-3.0.0"
       sources."pinkie-2.0.4"
       sources."pinkie-promise-2.0.1"
-      sources."pino-5.0.4"
+      sources."pino-5.5.0"
       sources."pino-std-serializers-2.3.0"
+      sources."pirates-4.0.0"
+      sources."pkg-dir-2.0.0"
       sources."pluralize-7.0.0"
       sources."po2json-0.4.5"
       sources."posix-character-classes-0.1.1"
-      (sources."postcss-6.0.23" // {
+      (sources."postcss-7.0.5" // {
         dependencies = [
-          sources."ansi-styles-3.2.1"
           sources."chalk-2.4.1"
-          sources."source-map-0.6.1"
-          sources."supports-color-5.5.0"
         ];
       })
       sources."prelude-ls-1.1.2"
       sources."prepend-http-1.0.4"
-      sources."private-0.1.8"
       sources."probe-image-size-4.0.0"
       sources."process-0.11.10"
       sources."process-nextick-args-2.0.0"
@@ -60137,13 +63219,14 @@ in
       sources."registry-url-3.1.0"
       (sources."relaxed-json-1.0.1" // {
         dependencies = [
+          sources."ansi-styles-2.2.1"
           sources."chalk-1.1.3"
+          sources."supports-color-2.0.0"
         ];
       })
       sources."remove-trailing-separator-1.1.0"
       sources."repeat-element-1.1.3"
       sources."repeat-string-1.6.1"
-      sources."repeating-2.0.1"
       sources."request-2.88.0"
       sources."require-directory-2.1.1"
       sources."require-main-filename-1.0.1"
@@ -60164,7 +63247,7 @@ in
       sources."safer-buffer-2.1.2"
       sources."sax-1.2.4"
       sources."secure-keys-1.0.0"
-      sources."semver-5.5.0"
+      sources."semver-5.6.0"
       sources."semver-diff-2.1.0"
       sources."set-blocking-2.0.0"
       (sources."set-value-2.0.0" // {
@@ -60197,12 +63280,12 @@ in
           sources."punycode-1.4.1"
           sources."regenerator-runtime-0.9.6"
           sources."request-2.87.0"
+          sources."source-map-0.5.7"
           sources."source-map-support-0.4.6"
           sources."tough-cookie-2.3.4"
         ];
       })
       sources."signal-exit-3.0.2"
-      sources."slash-1.0.0"
       (sources."slice-ansi-1.0.0" // {
         dependencies = [
           sources."is-fullwidth-code-point-2.0.0"
@@ -60225,6 +63308,7 @@ in
           })
           sources."is-descriptor-0.1.6"
           sources."kind-of-5.1.0"
+          sources."source-map-0.5.7"
         ];
       })
       (sources."snapdragon-node-2.1.1" // {
@@ -60233,19 +63317,16 @@ in
         ];
       })
       sources."snapdragon-util-3.0.1"
-      (sources."snyk-1.108.0" // {
+      (sources."snyk-1.103.2" // {
         dependencies = [
           sources."ansi-regex-3.0.0"
-          sources."ansi-styles-3.2.1"
           sources."chalk-2.4.1"
           sources."debug-3.2.6"
           sources."inquirer-3.3.0"
           sources."ms-2.1.1"
           sources."rx-lite-4.0.8"
-          sources."source-map-0.6.1"
           sources."source-map-support-0.5.9"
           sources."strip-ansi-4.0.0"
-          sources."supports-color-5.5.0"
         ];
       })
       (sources."snyk-config-2.2.0" // {
@@ -60254,25 +63335,24 @@ in
           sources."ms-2.1.1"
         ];
       })
-      (sources."snyk-docker-plugin-1.12.1" // {
+      (sources."snyk-docker-plugin-1.12.0" // {
         dependencies = [
           sources."debug-3.2.6"
           sources."ms-2.1.1"
         ];
       })
-      sources."snyk-go-plugin-1.6.0"
+      sources."snyk-go-plugin-1.5.2"
       sources."snyk-gradle-plugin-2.1.0"
-      (sources."snyk-module-1.9.1" // {
+      (sources."snyk-module-1.8.2" // {
         dependencies = [
           sources."debug-3.2.6"
           sources."ms-2.1.1"
         ];
       })
       sources."snyk-mvn-plugin-2.0.0"
-      (sources."snyk-nodejs-lockfile-parser-1.7.0" // {
+      (sources."snyk-nodejs-lockfile-parser-1.5.1" // {
         dependencies = [
           sources."lodash-4.17.10"
-          sources."source-map-0.6.1"
           sources."source-map-support-0.5.9"
         ];
       })
@@ -60288,25 +63368,23 @@ in
           sources."ms-2.1.1"
         ];
       })
-      (sources."snyk-policy-1.13.1" // {
+      (sources."snyk-policy-1.12.0" // {
         dependencies = [
           sources."debug-3.2.6"
           sources."ms-2.1.1"
-          sources."semver-5.6.0"
         ];
       })
-      sources."snyk-python-plugin-1.9.0"
+      sources."snyk-python-plugin-1.8.2"
       (sources."snyk-resolve-1.0.1" // {
         dependencies = [
           sources."debug-3.2.6"
           sources."ms-2.1.1"
         ];
       })
-      (sources."snyk-resolve-deps-4.0.2" // {
+      (sources."snyk-resolve-deps-4.0.1" // {
         dependencies = [
           sources."debug-3.2.6"
           sources."ms-2.1.1"
-          sources."semver-5.6.0"
         ];
       })
       sources."snyk-sbt-plugin-2.0.0"
@@ -60319,14 +63397,10 @@ in
       })
       sources."socks-1.1.10"
       sources."socks-proxy-agent-3.0.1"
-      sources."sonic-boom-0.6.1"
-      sources."source-map-0.5.7"
+      sources."sonic-boom-0.6.2"
+      sources."source-map-0.6.1"
       sources."source-map-resolve-0.5.2"
-      (sources."source-map-support-0.5.3" // {
-        dependencies = [
-          sources."source-map-0.6.1"
-        ];
-      })
+      sources."source-map-support-0.5.3"
       sources."source-map-url-0.4.0"
       sources."spawn-sync-1.0.15"
       sources."spdx-correct-3.0.2"
@@ -60378,7 +63452,7 @@ in
       sources."strip-bom-stream-3.0.0"
       sources."strip-eof-1.0.0"
       sources."strip-json-comments-2.0.1"
-      sources."supports-color-2.0.0"
+      sources."supports-color-5.5.0"
       sources."symbol-observable-1.0.1"
       sources."table-4.0.3"
       (sources."tar-stream-1.6.2" // {
@@ -60403,7 +63477,6 @@ in
       sources."timed-out-4.0.1"
       sources."tmp-0.0.33"
       sources."to-buffer-1.1.1"
-      sources."to-fast-properties-1.0.3"
       sources."to-object-path-0.3.0"
       sources."to-regex-3.0.2"
       sources."to-regex-range-2.1.1"
@@ -60416,7 +63489,6 @@ in
       })
       sources."tr46-1.0.1"
       sources."traverse-0.4.6"
-      sources."trim-right-1.0.1"
       sources."tslib-1.9.3"
       sources."tunnel-agent-0.6.0"
       sources."tweetnacl-0.14.5"
@@ -60459,7 +63531,7 @@ in
       sources."watchpack-1.5.0"
       sources."wcwidth-1.0.1"
       sources."webidl-conversions-4.0.2"
-      sources."whatwg-url-6.5.0"
+      sources."whatwg-url-7.0.0"
       sources."when-3.7.7"
       sources."which-1.3.1"
       sources."which-module-2.0.0"
@@ -60498,7 +63570,12 @@ in
           sources."yargs-parser-4.2.1"
         ];
       })
-      sources."yargs-parser-10.1.0"
+      (sources."yargs-parser-11.1.0" // {
+        dependencies = [
+          sources."camelcase-5.0.0"
+          sources."decamelize-1.2.0"
+        ];
+      })
       sources."yauzl-2.9.2"
       (sources."zip-dir-1.0.2" // {
         dependencies = [
@@ -60541,10 +63618,10 @@ in
   yarn = nodeEnv.buildNodePackage {
     name = "yarn";
     packageName = "yarn";
-    version = "1.12.1";
+    version = "1.12.3";
     src = fetchurl {
-      url = "https://registry.npmjs.org/yarn/-/yarn-1.12.1.tgz";
-      sha512 = "vdVLrYWx73k4QR8ZpQQ3HJg/X8aAunjUHuPlADR/ogmZOhnqgAdETPz0e/Df+MW8Dno7F1dOxS5e3G6niobumw==";
+      url = "https://registry.npmjs.org/yarn/-/yarn-1.12.3.tgz";
+      sha512 = "8f5rWNDvkhAmCxmn8C0LsNWMxTYVk4VGKiq0sIB6HGZjaZTHsGIH87SUmVDUEd2Wk54bqKoUlbVWgQFCQhRkVw==";
     };
     buildInputs = globalBuildInputs;
     meta = {
@@ -61183,7 +64260,7 @@ in
       })
       sources."text-table-0.2.0"
       sources."through-2.3.8"
-      sources."through2-2.0.3"
+      sources."through2-2.0.5"
       sources."timed-out-4.0.1"
       sources."titleize-1.0.1"
       sources."tmp-0.0.33"
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 5c7e3fae7c52..00d9669c5396 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -7657,6 +7657,10 @@ with pkgs;
 
   kanif = callPackage ../applications/networking/cluster/kanif { };
 
+  lumo = callPackage ../development/interpreters/clojurescript/lumo {
+    nodejs = nodejs-10_x;
+  };
+
   lxappearance = callPackage ../desktops/lxde/core/lxappearance {
     gtk2 = gtk2-x11;
   };

From b51018ed2ed174c7fa0be3d68aca2f0b51656e7d Mon Sep 17 00:00:00 2001
From: Tom Hall <tahall256@protonmail.ch>
Date: Sat, 3 Nov 2018 20:27:41 +0000
Subject: [PATCH 0977/1129] R: Remove jdk dependency on aarch32/64

Add javaSupport as an argument for R. Default to false on arm as there is no free jdk on arm.
---
 pkgs/applications/science/math/R/default.nix | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/science/math/R/default.nix b/pkgs/applications/science/math/R/default.nix
index 913fac6ac128..2fa8f3e5d7be 100644
--- a/pkgs/applications/science/math/R/default.nix
+++ b/pkgs/applications/science/math/R/default.nix
@@ -4,6 +4,7 @@
 , curl, Cocoa, Foundation, libobjc, libcxx, tzdata
 , withRecommendedPackages ? true
 , enableStrictBarrier ? false
+, javaSupport ? (!stdenv.hostPlatform.isAarch32 && !stdenv.hostPlatform.isAarch64)
 }:
 
 stdenv.mkDerivation rec {
@@ -17,9 +18,10 @@ stdenv.mkDerivation rec {
   buildInputs = [
     bzip2 gfortran libX11 libXmu libXt libXt libjpeg libpng libtiff ncurses
     pango pcre perl readline texLive xz zlib less texinfo graphviz icu
-    pkgconfig bison imake which jdk openblas curl
+    pkgconfig bison imake which openblas curl
   ] ++ stdenv.lib.optionals (!stdenv.isDarwin) [ tcl tk ]
-    ++ stdenv.lib.optionals stdenv.isDarwin [ Cocoa Foundation libobjc libcxx ];
+    ++ stdenv.lib.optionals stdenv.isDarwin [ Cocoa Foundation libobjc libcxx ]
+    ++ stdenv.lib.optional javaSupport jdk;
 
   patches = [ ./no-usr-local-search-paths.patch ];
 
@@ -47,7 +49,7 @@ stdenv.mkDerivation rec {
       CC=$(type -p cc)
       CXX=$(type -p c++)
       FC="${gfortran}/bin/gfortran" F77="${gfortran}/bin/gfortran"
-      JAVA_HOME="${jdk}"
+      ${stdenv.lib.optionalString javaSupport "JAVA_HOME=\"${jdk}\""}
       RANLIB=$(type -p ranlib)
       R_SHELL="${stdenv.shell}"
   '' + stdenv.lib.optionalString stdenv.isDarwin ''

From 39a9e2d65fad557b33b86856f86503cb0496bda8 Mon Sep 17 00:00:00 2001
From: Michael Weiss <dev.primeos@gmail.com>
Date: Fri, 9 Nov 2018 11:58:54 +0100
Subject: [PATCH 0978/1129] tdesktopPackages.preview: 1.4.4 -> 1.4.7

TODO: We're still using the old API ID (like the Arch package) which
should be used for testing only.
I've tried to contact the Telegram team multiple times via different
channels but didn't get a response so far. See [0],[1] for more details.

[0]: https://github.com/telegramdesktop/tdesktop/issues/4717
[1]: https://github.com/telegramdesktop/tdesktop/commit/65b2db216033aa08b7bc846df27843e566f08981
---
 .../instant-messengers/telegram/tdesktop/default.nix          | 4 ++--
 .../instant-messengers/telegram/tdesktop/generic.nix          | 4 +++-
 2 files changed, 5 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix
index 1e8080fd9c9d..b5994d03bc68 100644
--- a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix
+++ b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/default.nix
@@ -13,8 +13,8 @@ let
 in {
   stable = mkTelegram stableVersion;
   preview = mkTelegram (stableVersion // {
-    version = "1.4.4";
-    sha256Hash = "1m1j485r3vzpglzfn8l4cqskysvkx8l3pqaw3fgp66jfajbxynf0";
+    version = "1.4.7";
+    sha256Hash = "00kjirikywdbigm4zdnm50s3wxfn9bw1yx13xz4k4ppz6amq9nrp";
     stable = false;
   });
 }
diff --git a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/generic.nix b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/generic.nix
index e8f2c135fa8a..63c3f9e07252 100644
--- a/pkgs/applications/networking/instant-messengers/telegram/tdesktop/generic.nix
+++ b/pkgs/applications/networking/instant-messengers/telegram/tdesktop/generic.nix
@@ -97,7 +97,9 @@ mkDerivation rec {
     sed -i Telegram/ThirdParty/libtgvoip/libtgvoip.gyp \
       -e "/-msse2/d"
 
-    gyp \
+    gyp ${lib.optionalString (!stable) ''
+        -Dapi_id=17349 \
+        -Dapi_hash=344583e45741c457fe1862106095a5eb ''}\
       -Dbuild_defines=${GYP_DEFINES} \
       -Gconfig=Release \
       --depth=Telegram/gyp \

From 318393ec66711c2ec90d53ea0f45373474fbfe80 Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Sat, 10 Nov 2018 16:09:50 -0500
Subject: [PATCH 0979/1129] linux: 4.18.17 -> 4.18.18

---
 pkgs/os-specific/linux/kernel/linux-4.18.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/kernel/linux-4.18.nix b/pkgs/os-specific/linux/kernel/linux-4.18.nix
index add98cfb2faa..7859a32aeaf4 100644
--- a/pkgs/os-specific/linux/kernel/linux-4.18.nix
+++ b/pkgs/os-specific/linux/kernel/linux-4.18.nix
@@ -3,7 +3,7 @@
 with stdenv.lib;
 
 buildLinux (args // rec {
-  version = "4.18.17";
+  version = "4.18.18";
 
   # modDirVersion needs to be x.y.z, will automatically add .0 if needed
   modDirVersion = if (modDirVersionArg == null) then concatStrings (intersperse "." (take 3 (splitString "." "${version}.0"))) else modDirVersionArg;
@@ -13,6 +13,6 @@ buildLinux (args // rec {
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz";
-    sha256 = "0353ns09i5y0fcygvly20z0qrp6gcqd453186ihm4r7ajgh43bz2";
+    sha256 = "0g83i1ai0z0gpjw1rm8a8wdipjjxhfdvp798nrl14l5d2pw63crl";
   };
 } // (args.argsOverride or {}))

From a862492bf1091f1f10140a17be1d5de918a51361 Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Sat, 10 Nov 2018 16:10:44 -0500
Subject: [PATCH 0980/1129] linux: 4.14.79 -> 4.14.80

---
 pkgs/os-specific/linux/kernel/linux-4.14.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/kernel/linux-4.14.nix b/pkgs/os-specific/linux/kernel/linux-4.14.nix
index a5170edfa261..61afe092f722 100644
--- a/pkgs/os-specific/linux/kernel/linux-4.14.nix
+++ b/pkgs/os-specific/linux/kernel/linux-4.14.nix
@@ -3,7 +3,7 @@
 with stdenv.lib;
 
 buildLinux (args // rec {
-  version = "4.14.79";
+  version = "4.14.80";
 
   # modDirVersion needs to be x.y.z, will automatically add .0 if needed
   modDirVersion = if (modDirVersionArg == null) then concatStrings (intersperse "." (take 3 (splitString "." "${version}.0"))) else modDirVersionArg;
@@ -13,6 +13,6 @@ buildLinux (args // rec {
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz";
-    sha256 = "0flkkgfjzs6z7hkr15lga8jvxgwn6wi885yf5wyr0zxjrqg0f6an";
+    sha256 = "1lnp7qnlbj8mrc6iwnffpq3dbms3l40qxwdbqmd4g9my3k0ppp4x";
   };
 } // (args.argsOverride or {}))

From ab77043c56649358fffebdba2ad5ca0a48c08466 Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Sat, 10 Nov 2018 16:11:04 -0500
Subject: [PATCH 0981/1129] linux: 4.9.135 -> 4.9.136

---
 pkgs/os-specific/linux/kernel/linux-4.9.nix | 4 ++--
 pkgs/top-level/all-packages.nix             | 5 -----
 2 files changed, 2 insertions(+), 7 deletions(-)

diff --git a/pkgs/os-specific/linux/kernel/linux-4.9.nix b/pkgs/os-specific/linux/kernel/linux-4.9.nix
index 89702c44ccbc..666e69f2509c 100644
--- a/pkgs/os-specific/linux/kernel/linux-4.9.nix
+++ b/pkgs/os-specific/linux/kernel/linux-4.9.nix
@@ -1,11 +1,11 @@
 { stdenv, buildPackages, fetchurl, perl, buildLinux, ... } @ args:
 
 buildLinux (args // rec {
-  version = "4.9.135";
+  version = "4.9.136";
   extraMeta.branch = "4.9";
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz";
-    sha256 = "1kjly5ynsg2jy5nj41z21s8f18wfs4nk843jlmmcazzax6xv08z0";
+    sha256 = "1j1f4v3m0gggarz0r33pk907gf8dy633s9x5k3ww3khkvzi335fk";
   };
 } // (args.argsOverride or {}))
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 5c7e3fae7c52..42e85c806e0a 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -14339,11 +14339,6 @@ with pkgs;
       [ kernelPatches.bridge_stp_helper
         kernelPatches.cpu-cgroup-v2."4.9"
         kernelPatches.modinst_arg_list_too_long
-        # https://github.com/NixOS/nixpkgs/issues/42755
-        # Remove these xen-netfront patches once they're included in
-        # upstream! Fixes https://github.com/NixOS/nixpkgs/issues/42755
-        kernelPatches.xen-netfront_fix_mismatched_rtnl_unlock
-        kernelPatches.xen-netfront_update_features_after_registering_netdev
       ];
   };
 

From 464737ebbb9fabadf9915b67543326a9ed8a9683 Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Sat, 10 Nov 2018 16:11:13 -0500
Subject: [PATCH 0982/1129] linux: 4.4.162 -> 4.4.163

---
 pkgs/os-specific/linux/kernel/linux-4.4.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/kernel/linux-4.4.nix b/pkgs/os-specific/linux/kernel/linux-4.4.nix
index f4ef5c6eb1cf..7cd431ea1050 100644
--- a/pkgs/os-specific/linux/kernel/linux-4.4.nix
+++ b/pkgs/os-specific/linux/kernel/linux-4.4.nix
@@ -1,11 +1,11 @@
 { stdenv, buildPackages, fetchurl, perl, buildLinux, ... } @ args:
 
 buildLinux (args // rec {
-  version = "4.4.162";
+  version = "4.4.163";
   extraMeta.branch = "4.4";
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz";
-    sha256 = "0l2agmxzmq89jbh7r00qg4msvmhny40m2jar96fibwpklwd44kki";
+    sha256 = "1x1fixnz41q6pq1cms9z48mrac984r675m94fdm08m8ajqxddcv1";
   };
 } // (args.argsOverride or {}))

From 5ac78febe2e4c2111b3adde16fb816fe252b1069 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Sat, 10 Nov 2018 21:33:03 +0000
Subject: [PATCH 0983/1129] hovercraft: nitpicks

---
 pkgs/applications/misc/hovercraft/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/applications/misc/hovercraft/default.nix b/pkgs/applications/misc/hovercraft/default.nix
index dd0ed8511f63..ba23078bba93 100644
--- a/pkgs/applications/misc/hovercraft/default.nix
+++ b/pkgs/applications/misc/hovercraft/default.nix
@@ -30,6 +30,6 @@ buildPythonApplication rec {
     description = "Makes impress.js presentations from reStructuredText";
     homepage = https://github.com/regebro/hovercraft;
     license = licenses.mit;
-    maintainers = with maintainers;[ goibhniu makefu ];
+    maintainers = with maintainers; [ goibhniu makefu ];
   };
 }

From b60dccbf4f021596913ad595dc43a3dff9f44ad4 Mon Sep 17 00:00:00 2001
From: Robert Hensing <robert@roberthensing.nl>
Date: Sat, 10 Nov 2018 23:21:21 +0100
Subject: [PATCH 0984/1129] NixOS: update config.nixpkgs.pkgs documentation

---
 nixos/modules/misc/nixpkgs.nix | 20 ++++++++++++--------
 1 file changed, 12 insertions(+), 8 deletions(-)

diff --git a/nixos/modules/misc/nixpkgs.nix b/nixos/modules/misc/nixpkgs.nix
index 2bebbdcad94a..93fbf16841e5 100644
--- a/nixos/modules/misc/nixpkgs.nix
+++ b/nixos/modules/misc/nixpkgs.nix
@@ -75,11 +75,18 @@ in
       type = pkgsType;
       example = literalExample ''import <nixpkgs> {}'';
       description = ''
-        This is the evaluation of Nixpkgs that will be provided to
-        all NixOS modules. Defining this option has the effect of
-        ignoring the other options that would otherwise be used to
-        evaluate Nixpkgs, because those are arguments to the default
-        value. The default value imports the Nixpkgs source files
+        If set, the pkgs argument to all NixOS modules is the value of
+        this option, extended with <code>nixpkgs.overlays</code>, if
+        that is also set. Either <code>nixpkgs.crossSystem</code> or
+        <code>nixpkgs.localSystem</code> will be used in an assertion
+        to check that the NixOS and Nixpkgs architectures match. Any
+        other options in <code>nixpkgs.*</code>, notably <code>config</code>,
+        will be ignored.
+
+        If unset, the pkgs argument to all NixOS modules is determined
+        as shown in the default value for this option.
+
+        The default value imports the Nixpkgs source files
         relative to the location of this NixOS module, because
         NixOS and Nixpkgs are distributed together for consistency,
         so the <code>nixos</code> in the default value is in fact a
@@ -140,9 +147,6 @@ in
         If <code>nixpkgs.pkgs</code> is set, overlays specified here
         will be applied after the overlays that were already present
         in <code>nixpkgs.pkgs</code>.
-
-        Note that other options such as <code>nixpkgs.config</code> will
-        be ignored when <code>nixpkgs.pkgs</code> is set.
       '';
     };
 

From edf30a24e8f5b28006e8ec7d504e2b8688b60c93 Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Fri, 9 Nov 2018 08:06:41 -0500
Subject: [PATCH 0985/1129] xonsh: 0.6.8 -> 0.8.3

---
 pkgs/shells/xonsh/default.nix | 26 ++++++++++++--------------
 1 file changed, 12 insertions(+), 14 deletions(-)

diff --git a/pkgs/shells/xonsh/default.nix b/pkgs/shells/xonsh/default.nix
index 6522985ab864..32dfd56796d6 100644
--- a/pkgs/shells/xonsh/default.nix
+++ b/pkgs/shells/xonsh/default.nix
@@ -1,20 +1,19 @@
-{ stdenv, fetchFromGitHub, python3Packages, glibcLocales, coreutils }:
+{ stdenv, fetchFromGitHub, python3Packages, glibcLocales, coreutils, git }:
 
 python3Packages.buildPythonApplication rec {
-  name = "xonsh-${version}";
-  version = "0.6.8";
+  pname = "xonsh";
+  version = "0.8.3";
 
+  # fetch from github because the pypi package ships incomplete tests
   src = fetchFromGitHub {
-    owner = "scopatz";
-    repo = "xonsh";
-    rev = version;
-    sha256= "1a74xpww7k432b2z44388rl31nqvckn2q3fswci04f48698hzs5l";
+    owner  = "scopatz";
+    repo   = "xonsh";
+    rev    = "refs/tags/${version}";
+    sha256 = "1qnghqswvqlwv9121r4maibmn2dvqmbr3fhsnngsj3q7plfp7yb2";
   };
 
   LC_ALL = "en_US.UTF-8";
   postPatch = ''
-    rm xonsh/winutils.py
-
     sed -ie "s|/bin/ls|${coreutils}/bin/ls|" tests/test_execer.py
     sed -ie 's|/usr/bin/env|${coreutils}/bin/env|' scripts/xon.sh
 
@@ -22,15 +21,14 @@ python3Packages.buildPythonApplication rec {
   '';
 
   checkPhase = ''
-    HOME=$TMPDIR XONSH_INTERACTIVE=0 \
+    HOME=$TMPDIR \
       pytest \
-        -k 'not test_man_completion and not test_printfile and not test_sourcefile and not test_printname ' \
-        tests
+        -k 'not test_man_completion and not test_indir and not test_xonsh_party and not test_foreign_bash_data and not test_script and not test_single_command_no_windows and not test_redirect_out_to_file and not test_sourcefile and not test_printname and not test_printfile'
   '';
 
-  checkInputs = with python3Packages; [ pytest glibcLocales ];
+  checkInputs = [ python3Packages.pytest glibcLocales git ];
 
-  propagatedBuildInputs = with python3Packages; [ ply prompt_toolkit ];
+  propagatedBuildInputs = with python3Packages; [ ply prompt_toolkit_2 pygments ];
 
   meta = with stdenv.lib; {
     description = "A Python-ish, BASHwards-compatible shell";

From e15ef48c80f3415dabda5bd2d307a1a247d71888 Mon Sep 17 00:00:00 2001
From: Mario Rodas <marsam@users.noreply.github.com>
Date: Fri, 9 Nov 2018 08:14:57 -0500
Subject: [PATCH 0986/1129] pythonPackages.ptpython: 0.41 -> 2.0.4

---
 pkgs/development/python-modules/ptpython/default.nix | 10 ++++------
 pkgs/top-level/python-packages.nix                   |  4 +++-
 2 files changed, 7 insertions(+), 7 deletions(-)

diff --git a/pkgs/development/python-modules/ptpython/default.nix b/pkgs/development/python-modules/ptpython/default.nix
index b553d50d130b..d48e42ef2646 100644
--- a/pkgs/development/python-modules/ptpython/default.nix
+++ b/pkgs/development/python-modules/ptpython/default.nix
@@ -1,17 +1,15 @@
-{ stdenv, buildPythonPackage, fetchPypi, wcwidth, six, prompt_toolkit, docopt
-, jedi, pygments }:
+{ stdenv, buildPythonPackage, fetchPypi, prompt_toolkit, docopt , jedi, pygments }:
 
 buildPythonPackage rec {
   pname = "ptpython";
-  version = "0.41";
-  name  = "${pname}-${version}";
+  version = "2.0.4";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "1hcaaadkp5n37hxggraynifa33wx1akklzvf6y4rvgjxbjl2g2x7";
+    sha256 = "1m34jbwj3j3762mg1vynpgciqw4kqdzdqjvd62mwhbjkly7ddsgb";
   };
 
-  propagatedBuildInputs = [ wcwidth six prompt_toolkit docopt jedi pygments ];
+  propagatedBuildInputs = [ prompt_toolkit docopt jedi pygments ];
 
   # no tests to run
   doCheck = false;
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 7d8415049a44..c73e284e1f3e 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -3781,7 +3781,9 @@ in {
 
   psycopg2 = callPackage ../development/python-modules/psycopg2 {};
 
-  ptpython = callPackage ../development/python-modules/ptpython {};
+  ptpython = callPackage ../development/python-modules/ptpython {
+    prompt_toolkit = self.prompt_toolkit_2;
+  };
 
   publicsuffix = callPackage ../development/python-modules/publicsuffix {};
 

From 1f2abb2349f24312b86322e0b6f015d6e8934059 Mon Sep 17 00:00:00 2001
From: Renaud <c0bw3b@users.noreply.github.com>
Date: Sun, 11 Nov 2018 00:47:50 +0100
Subject: [PATCH 0987/1129] nailgun: 0.9.1 -> 1.0.0 (#50211)

* nailgun: 0.9.1 -> 1.0.0

This release officially announces Nailgun as production-ready. In this release, package namespaces were changed to com.facebook to indicate code ownership, so some code changes might be required when upgrading from 0.9.* to 1.0.0. All APIs remain the same as 0.9.3.

* nailgun: official GitHub repo is now facebook
---
 pkgs/development/tools/nailgun/default.nix | 26 ++++++++++------------
 1 file changed, 12 insertions(+), 14 deletions(-)

diff --git a/pkgs/development/tools/nailgun/default.nix b/pkgs/development/tools/nailgun/default.nix
index 6a34c1c130d9..07005131fb5e 100644
--- a/pkgs/development/tools/nailgun/default.nix
+++ b/pkgs/development/tools/nailgun/default.nix
@@ -1,39 +1,37 @@
 { stdenv, fetchMavenArtifact, fetchFromGitHub, jre, makeWrapper }:
 
 let
-  version = "0.9.1";
+  version = "1.0.0";
   nailgun-server = fetchMavenArtifact {
-    groupId = "com.martiansoftware";
+    groupId = "com.facebook";
     artifactId = "nailgun-server";
     inherit version;
-    sha256 = "09ggkkd1s58jmpc74s6m10d3hyf6bmif31advk66zljbpykgl625";
+    sha256 = "1mk8pv0g2xg9m0gsb96plbh6mc24xrlyrmnqac5mlbl4637l4q95";
   };
 in
 stdenv.mkDerivation rec {
   name = "nailgun-${version}";
 
   src = fetchFromGitHub {
-    owner = "martylamb";
+    owner = "facebook";
     repo = "nailgun";
-    rev = "1ad9ad9d2d17c895144a9ee0e7acb1d3d90fb66f";
-    sha256 = "1f8ac5kg7imhix9kqdzwiav1bxh8vljv2hb1mq8yz4rqsrx2r4w3";
+    rev = "nailgun-all-v${version}";
+    sha256 = "1syyk4ss5vq1zf0ma00svn56lal53ffpikgqgzngzbwyksnfdlh6";
   };
 
-  makeFlags = "PREFIX=$(out)";
+  makeFlags = [ "PREFIX=$(out)" ];
 
-  buildInputs = [ makeWrapper ];
-
-  installPhase = ''
-    install -D ng $out/bin/ng
+  nativeBuildInputs = [ makeWrapper ];
 
+  postInstall = ''
     makeWrapper ${jre}/bin/java $out/bin/ng-server \
-      --add-flags '-cp ${nailgun-server.jar}:$CLASSPATH com.martiansoftware.nailgun.NGServer'
+      --add-flags '-classpath ${nailgun-server.jar}:$CLASSPATH com.facebook.nailgun.NGServer'
   '';
 
   meta = with stdenv.lib; {
     description = "Client, protocol, and server for running Java programs from the command line without incurring the JVM startup overhead";
-    homepage = http://martiansoftware.com/nailgun/;
-    license = licenses.apsl20;
+    homepage = http://www.martiansoftware.com/nailgun/;
+    license = licenses.asl20;
     platforms = platforms.linux;
     maintainers = with maintainers; [ volth ];
   };

From 0528001141170ef49ef37de41a40e7d2c7e0a49d Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Sun, 11 Nov 2018 00:53:53 +0100
Subject: [PATCH 0988/1129] gnss-sdr: turn off unit tests explicitly

---
 pkgs/applications/misc/gnss-sdr/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/applications/misc/gnss-sdr/default.nix b/pkgs/applications/misc/gnss-sdr/default.nix
index 0bb0926f048a..6cbdea8c6867 100644
--- a/pkgs/applications/misc/gnss-sdr/default.nix
+++ b/pkgs/applications/misc/gnss-sdr/default.nix
@@ -47,6 +47,7 @@ stdenv.mkDerivation rec {
   cmakeFlags = [
     "-DGFlags_ROOT_DIR=${google-gflags}/lib"
     "-DGLOG_INCLUDE_DIR=${glog}/include"
+    "-DENABLE_UNIT_TESTING=OFF"
 
     # gnss-sdr doesn't truly depend on BLAS or LAPACK, as long as
     # armadillo is built using both, so skip checking for them.

From 68c3e5f38bc99c7e87b721ea9b11a24403a85204 Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Sat, 10 Nov 2018 19:26:12 -0500
Subject: [PATCH 0989/1129] docker: Fix binary names

---
 pkgs/applications/virtualization/docker/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/virtualization/docker/default.nix b/pkgs/applications/virtualization/docker/default.nix
index 05c764086021..c8495155dbca 100644
--- a/pkgs/applications/virtualization/docker/default.nix
+++ b/pkgs/applications/virtualization/docker/default.nix
@@ -136,9 +136,9 @@ rec {
         --prefix PATH : "$out/libexec/docker:$extraPath"
 
       # docker uses containerd now
-      ln -s ${docker-containerd}/bin/containerd $out/libexec/docker/docker-containerd
-      ln -s ${docker-containerd}/bin/containerd-shim $out/libexec/docker/docker-containerd-shim
-      ln -s ${docker-runc}/bin/runc $out/libexec/docker/docker-runc
+      ln -s ${docker-containerd}/bin/containerd $out/libexec/docker/containerd
+      ln -s ${docker-containerd}/bin/containerd-shim $out/libexec/docker/containerd-shim
+      ln -s ${docker-runc}/bin/runc $out/libexec/docker/runc
       ln -s ${docker-proxy}/bin/docker-proxy $out/libexec/docker/docker-proxy
       ln -s ${docker-tini}/bin/tini-static $out/libexec/docker/docker-init
 

From 627d656949b336a4672bb340fa567d844bdd1647 Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Sat, 10 Nov 2018 19:44:45 -0500
Subject: [PATCH 0990/1129] syncplay: 1.5.5 -> 1.6.0

---
 pkgs/applications/networking/syncplay/default.nix | 12 ++++++------
 1 file changed, 6 insertions(+), 6 deletions(-)

diff --git a/pkgs/applications/networking/syncplay/default.nix b/pkgs/applications/networking/syncplay/default.nix
index 07444fbb9fe9..5861513e7bd2 100644
--- a/pkgs/applications/networking/syncplay/default.nix
+++ b/pkgs/applications/networking/syncplay/default.nix
@@ -1,17 +1,17 @@
-{ stdenv, fetchurl, python2Packages }:
+{ stdenv, fetchurl, python3Packages }:
 
-python2Packages.buildPythonApplication rec {
+python3Packages.buildPythonApplication rec {
   name = "syncplay-${version}";
-  version = "1.5.5";
+  version = "1.6.0";
 
   format = "other";
 
   src = fetchurl {
-    url = https://github.com/Syncplay/syncplay/archive/v1.5.5.tar.gz;
-    sha256 = "0g12hm84c48fjrmwljl0ii62f55vm6fk2mv8vna7fadabmk6dwhr";
+    url = https://github.com/Syncplay/syncplay/archive/v1.6.0.tar.gz;
+    sha256 = "19x7b694p8b3qp578qk8q4g0pybhfjd4zk8rgrggz40s1yyfnwy5";
   };
 
-  propagatedBuildInputs = with python2Packages; [ pyside twisted ];
+  propagatedBuildInputs = with python3Packages; [ pyside twisted ];
 
   makeFlags = [ "DESTDIR=" "PREFIX=$(out)" ];
 

From 06f36767709f64792175cf6b8d2a0c0cd3026f61 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Sun, 11 Nov 2018 02:17:20 +0100
Subject: [PATCH 0991/1129] scalapack: set platform to linux

---
 pkgs/development/libraries/science/math/scalapack/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/libraries/science/math/scalapack/default.nix b/pkgs/development/libraries/science/math/scalapack/default.nix
index 83e177c66c18..1fce95f366b6 100644
--- a/pkgs/development/libraries/science/math/scalapack/default.nix
+++ b/pkgs/development/libraries/science/math/scalapack/default.nix
@@ -22,7 +22,7 @@ stdenv.mkDerivation rec {
     homepage = http://www.netlib.org/scalapack/;
     description = "Library of high-performance linear algebra routines for parallel distributed memory machines";
     license = licenses.bsdOriginal;
-    platforms = platforms.all;
+    platforms = platforms.linux;
     maintainers = [ maintainers.costrouc ];
   };
 

From 6533d7588d697568afccff398df5369e851ebc62 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Sun, 11 Nov 2018 02:17:49 +0100
Subject: [PATCH 0992/1129] colpack: set platform to linux

---
 pkgs/applications/science/math/colpack/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/applications/science/math/colpack/default.nix b/pkgs/applications/science/math/colpack/default.nix
index e62df7f11cc7..94e0a44226d4 100644
--- a/pkgs/applications/science/math/colpack/default.nix
+++ b/pkgs/applications/science/math/colpack/default.nix
@@ -25,6 +25,7 @@ stdenv.mkDerivation rec {
     vertex coloring and derivative computation";
     homepage = "http://cscapes.cs.purdue.edu/coloringpage/software.htm#functionalities";
     license = licenses.lgpl3;
+    platforms = platforms.linux;
     maintainers = with maintainers; [ edwtjo ];
   };
 

From a538d9982a12c5d4d1d27dca05957f5257b926ed Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sun, 11 Nov 2018 01:17:56 +0000
Subject: [PATCH 0993/1129] gnum4: set platforms=all; it works on Windows

---
 pkgs/development/tools/misc/gnum4/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/tools/misc/gnum4/default.nix b/pkgs/development/tools/misc/gnum4/default.nix
index e5ea17841aa6..c6dd843aac31 100644
--- a/pkgs/development/tools/misc/gnum4/default.nix
+++ b/pkgs/development/tools/misc/gnum4/default.nix
@@ -37,7 +37,7 @@ stdenv.mkDerivation rec {
     '';
 
     license = stdenv.lib.licenses.gpl3Plus;
-    platforms = stdenv.lib.platforms.unix;
+    platforms = stdenv.lib.platforms.all;
   };
 
 }

From 0f21becbabc8c2a2d2106b7f855830a2567ef4a1 Mon Sep 17 00:00:00 2001
From: Paul TREHIOU <paul@nyanlout.re>
Date: Sun, 11 Nov 2018 02:17:57 +0100
Subject: [PATCH 0994/1129] spaceship-prompt: init at 3.7.1 (#50177)

* spaceship-prompt: init at 3.7.1

* spaceship-prompt: useless zsh argument
---
 pkgs/shells/zsh/spaceship-prompt/default.nix | 33 ++++++++++++++++++++
 pkgs/top-level/all-packages.nix              |  2 ++
 2 files changed, 35 insertions(+)
 create mode 100644 pkgs/shells/zsh/spaceship-prompt/default.nix

diff --git a/pkgs/shells/zsh/spaceship-prompt/default.nix b/pkgs/shells/zsh/spaceship-prompt/default.nix
new file mode 100644
index 000000000000..312b1e79f49c
--- /dev/null
+++ b/pkgs/shells/zsh/spaceship-prompt/default.nix
@@ -0,0 +1,33 @@
+{ stdenv, fetchFromGitHub }:
+
+stdenv.mkDerivation rec{
+  name = "spaceship-prompt-${version}";
+  version = "3.7.1";
+
+  src = fetchFromGitHub {
+    owner = "denysdovhan";
+    repo = "spaceship-prompt";
+    sha256 = "0laihax18bs254rm2sww5wkjbmkp4m5c8aicgqpi4diz7difxk6z";
+    rev = "aaa34aeab9ba0a99416788f627ec9aeffba392f0";
+  };
+
+  installPhase = ''
+    install -D -m644 LICENSE.md "$out/share/licenses/spaceship-prompt/LICENSE"
+    install -D -m644 README.md "$out/share/doc/spaceship-prompt/README.md"
+    find docs -type f -exec install -D -m644 {} "$out/share/doc/spaceship-prompt/{}" \;
+    find lib -type f -exec install -D -m644 {} "$out/lib/spaceship-prompt/{}" \;
+    find scripts -type f -exec install -D -m644 {} "$out/lib/spaceship-prompt/{}" \;
+    find sections -type f -exec install -D -m644 {} "$out/lib/spaceship-prompt/{}" \;
+    install -D -m644 spaceship.zsh "$out/lib/spaceship-prompt/spaceship.zsh"
+    install -d "$out/share/zsh/themes/"
+    ln -s "$out/lib/spaceship-prompt/spaceship.zsh" "$out/share/zsh/themes/spaceship.zsh-theme"
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Zsh prompt for Astronauts";
+    homepage = https://github.com/halfo/lambda-mod-zsh-theme/;
+    license = licenses.mit;
+    platforms = platforms.linux;
+    maintainers = with maintainers; [ nyanloutre ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 761de02405a0..04c337f1ad59 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -12360,6 +12360,8 @@ with pkgs;
 
   spandsp = callPackage ../development/libraries/spandsp {};
 
+  spaceship-prompt = callPackage ../shells/zsh/spaceship-prompt {};
+
   spatialite_tools = callPackage ../development/libraries/spatialite-tools { };
 
   spdk = callPackage ../development/libraries/spdk { };

From 31beea9818cb780237616d140f4dba090cd2cf44 Mon Sep 17 00:00:00 2001
From: volth <volth@webmaster.ms>
Date: Sun, 11 Nov 2018 01:42:40 +0000
Subject: [PATCH 0995/1129] gnum4: set platforms=unix++windows

---
 pkgs/development/tools/misc/gnum4/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/tools/misc/gnum4/default.nix b/pkgs/development/tools/misc/gnum4/default.nix
index c6dd843aac31..12a5b8f2adcf 100644
--- a/pkgs/development/tools/misc/gnum4/default.nix
+++ b/pkgs/development/tools/misc/gnum4/default.nix
@@ -37,7 +37,7 @@ stdenv.mkDerivation rec {
     '';
 
     license = stdenv.lib.licenses.gpl3Plus;
-    platforms = stdenv.lib.platforms.all;
+    platforms = stdenv.lib.platforms.unix ++ stdenv.lib.platforms.windows;
   };
 
 }

From 24af0bc2b5293697695cb6d878b007130ab8db14 Mon Sep 17 00:00:00 2001
From: Aaron Andersen <aaron@fosslib.net>
Date: Sat, 10 Nov 2018 17:37:22 -0500
Subject: [PATCH 0996/1129] nixos/incron: added nixos test to ensure expected
 behaviour

---
 nixos/release.nix      |  1 +
 nixos/tests/incron.nix | 52 ++++++++++++++++++++++++++++++++++++++++++
 2 files changed, 53 insertions(+)
 create mode 100644 nixos/tests/incron.nix

diff --git a/nixos/release.nix b/nixos/release.nix
index b7f8c01bb000..c2372da23f57 100644
--- a/nixos/release.nix
+++ b/nixos/release.nix
@@ -336,6 +336,7 @@ in rec {
   tests.plasma5 = callTest tests/plasma5.nix {};
   tests.plotinus = callTest tests/plotinus.nix {};
   tests.keymap = callSubTests tests/keymap.nix {};
+  tests.incron = callTest tests/incron.nix {};
   tests.initrdNetwork = callTest tests/initrd-network.nix {};
   tests.kafka = callSubTests tests/kafka.nix {};
   tests.kernel-latest = callTest tests/kernel-latest.nix {};
diff --git a/nixos/tests/incron.nix b/nixos/tests/incron.nix
new file mode 100644
index 000000000000..e39bbb5f096b
--- /dev/null
+++ b/nixos/tests/incron.nix
@@ -0,0 +1,52 @@
+import ./make-test.nix ({ pkgs, lib, ... }:
+
+{
+  name = "incron";
+  meta.maintainers = [ lib.maintainers.aanderse ];
+
+  machine =
+    { ... }:
+    { services.incron.enable = true;
+      services.incron.extraPackages = [ pkgs.coreutils ];
+      services.incron.systab = ''
+        /test IN_CREATE,IN_MODIFY,IN_CLOSE_WRITE,IN_MOVED_FROM,IN_MOVED_TO echo "$@/$# $%" >> /root/incron.log
+      '';
+
+      # ensure the directory to be monitored exists before incron is started
+      system.activationScripts.incronTest = ''
+        mkdir /test
+      '';
+    };
+
+  testScript = ''
+    startAll;
+
+    $machine->waitForUnit("multi-user.target");
+    $machine->waitForUnit("incron.service");
+
+    $machine->succeed("test -d /test");
+    # create some activity for incron to monitor
+    $machine->succeed("touch /test/file");
+    $machine->succeed("echo foo >> /test/file");
+    $machine->succeed("mv /test/file /root");
+    $machine->succeed("mv /root/file /test");
+
+    $machine->sleep(1);
+
+    # touch /test/file
+    $machine->succeed("grep '/test/file IN_CREATE' /root/incron.log");
+
+    # echo foo >> /test/file
+    $machine->succeed("grep '/test/file IN_MODIFY' /root/incron.log");
+    $machine->succeed("grep '/test/file IN_CLOSE_WRITE' /root/incron.log");
+
+    # mv /test/file /root
+    $machine->succeed("grep '/test/file IN_MOVED_FROM' /root/incron.log");
+
+    # mv /root/file /test
+    $machine->succeed("grep '/test/file IN_MOVED_TO' /root/incron.log");
+
+    # ensure something unexpected is not present
+    $machine->fail("grep 'IN_OPEN' /root/incron.log");
+  '';
+})

From b3e2a484531a57fa903f094ce8614a198c3bc6ff Mon Sep 17 00:00:00 2001
From: Orivej Desh <orivej@gmx.fr>
Date: Sun, 11 Nov 2018 02:41:30 +0000
Subject: [PATCH 0997/1129] SDL_sound: enable on Darwin

---
 pkgs/development/libraries/SDL_sound/default.nix | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/libraries/SDL_sound/default.nix b/pkgs/development/libraries/SDL_sound/default.nix
index 2a009a3b7104..0e717c530357 100644
--- a/pkgs/development/libraries/SDL_sound/default.nix
+++ b/pkgs/development/libraries/SDL_sound/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, SDL, libvorbis, flac, libmikmod }:
+{ stdenv, lib, fetchurl, SDL, libvorbis, flac, libmikmod }:
 
 stdenv.mkDerivation rec {
   name = "SDL_sound-${version}";
@@ -11,9 +11,11 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ SDL libvorbis flac libmikmod ];
 
-  meta = with stdenv.lib; {
+  configureFlags = lib.optional stdenv.isDarwin "--disable-sdltest";
+
+  meta = with lib; {
     description = "SDL sound library";
-    platforms = platforms.linux;
+    platforms = platforms.unix;
     license = licenses.lgpl21;
     homepage = https://www.icculus.org/SDL_sound/;
   };

From 65e0b5c725bccbaef69b673fa86bd647c4891b49 Mon Sep 17 00:00:00 2001
From: Orivej Desh <orivej@gmx.fr>
Date: Sun, 11 Nov 2018 02:37:00 +0000
Subject: [PATCH 0998/1129] dosbox: 0.74 -> 0.74-2

---
 pkgs/misc/emulators/dosbox/default.nix | 25 ++++++-------------------
 1 file changed, 6 insertions(+), 19 deletions(-)

diff --git a/pkgs/misc/emulators/dosbox/default.nix b/pkgs/misc/emulators/dosbox/default.nix
index 57e76a964376..878e98fa1665 100644
--- a/pkgs/misc/emulators/dosbox/default.nix
+++ b/pkgs/misc/emulators/dosbox/default.nix
@@ -1,31 +1,16 @@
-{ stdenv, lib, fetchurl, SDL, makeDesktopItem, libGLU_combined }:
+{ stdenv, lib, fetchurl, makeDesktopItem, SDL, SDL_net, SDL_sound, libGLU_combined, libpng }:
 
 stdenv.mkDerivation rec {
-  name = "dosbox-0.74";
+  name = "dosbox-0.74-2";
 
   src = fetchurl {
     url = "mirror://sourceforge/dosbox/${name}.tar.gz";
-    sha256 = "01cfjc5bs08m4w79nbxyv7rnvzq2yckmgrbq36njn06lw8b4kxqk";
+    sha256 = "1ksp1b5szi0vy4x55rm3j1y9wq5mlslpy8llpg87rpdyjlsk0xvh";
   };
 
-  patches =
-    [ # Fix building with GCC 4.6.
-      (fetchurl {
-        url = "http://sources.gentoo.org/cgi-bin/viewvc.cgi/gentoo-x86/games-emulation/dosbox/files/dosbox-0.74-gcc46.patch?revision=1.1";
-        sha256 = "03iv1ph7fccfw327ngnhvzwyiix7fsbdb5mmpxivzkidhlrssxq9";
-      })
-      (fetchurl {
-        url = "https://svnweb.freebsd.org/ports/head/emulators/dosbox/files/patch-src_gui_sdlmain.cpp?revision=435580&view=co&pathrev=435580";
-        sha256 = "1mbj5wrn53k0zds2adys34949vzsbfgm0pmsyx14v9j0cxi7drca";
-        name = "patch-src_gui_sdlmain.cpp";
-      })
-    ];
-
-  patchFlags = "-p0";
-
   hardeningDisable = [ "format" ];
 
-  buildInputs = [ SDL libGLU_combined ];
+  buildInputs = [ SDL SDL_net SDL_sound libGLU_combined libpng ];
 
   configureFlags = lib.optional stdenv.isDarwin "--disable-sdltest";
 
@@ -43,6 +28,8 @@ stdenv.mkDerivation rec {
      cp ${desktopItem}/share/applications/* $out/share/applications
   '';
 
+  enableParallelBuilding = true;
+
   meta = with lib; {
     homepage = http://www.dosbox.com/;
     description = "A DOS emulator";

From c4cb982772f043365cb49d52c2afe2b03e791ea6 Mon Sep 17 00:00:00 2001
From: Edmund Wu <fangkazuto@gmail.com>
Date: Sun, 4 Nov 2018 20:25:11 -0500
Subject: [PATCH 0999/1129] vscode-extensions.ms-python.python: 2018.9.1 ->
 2018.10.1

---
 pkgs/misc/vscode-extensions/python/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/misc/vscode-extensions/python/default.nix b/pkgs/misc/vscode-extensions/python/default.nix
index a2d04edea19f..39e1341e15e2 100644
--- a/pkgs/misc/vscode-extensions/python/default.nix
+++ b/pkgs/misc/vscode-extensions/python/default.nix
@@ -20,8 +20,8 @@ vscode-utils.buildVscodeMarketplaceExtension {
   mktplcRef = {
     name = "python";
     publisher = "ms-python";
-    version = "2018.9.1";
-    sha256 = "050r1rb0xyfikfa6iq741s368xz600pqdk74w6cxszxpy8kl2hng";
+    version = "2018.10.1";
+    sha256 = "1j9nf09v31lmrjkxf7p1d78d064x6afzh0dvssmk3sjm2c5r432k";
   };
 
   postPatch = ''

From 48a3ea0f8148bffec8067bd47ebc75b16cb4bb01 Mon Sep 17 00:00:00 2001
From: worldofpeace <worldofpeace@users.noreply.github.com>
Date: Sat, 10 Nov 2018 22:01:44 -0500
Subject: [PATCH 1000/1129] wire-desktop: don't explicitly set phases

part of #28910
---
 .../networking/instant-messengers/wire-desktop/default.nix | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix b/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix
index 193e306f2286..c685a5b91c1e 100644
--- a/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix
+++ b/pkgs/applications/networking/instant-messengers/wire-desktop/default.nix
@@ -72,7 +72,10 @@ in
       categories = "Network;InstantMessaging;Chat;VideoConference";
     };
 
-    phases = [ "unpackPhase" "installPhase" ];
+    dontBuild = true;
+    dontPatchELF = true;
+    dontConfigure = true;
+
     nativeBuildInputs = [ dpkg ];
     unpackPhase = "dpkg-deb -x $src .";
     installPhase = ''
@@ -93,7 +96,7 @@ in
 
       # Desktop file
       mkdir -p "$out/share/applications"
-      cp ${desktopItem}/share/applications/* "$out/share/applications"
+      cp "${desktopItem}/share/applications/"* "$out/share/applications"
     '';
 
     meta = with stdenv.lib; {

From bad54d8704bca25085afe66fb22a3b03a53894e4 Mon Sep 17 00:00:00 2001
From: Orivej Desh <orivej@gmx.fr>
Date: Sun, 11 Nov 2018 03:42:39 +0000
Subject: [PATCH 1001/1129] gargoyle: 2017-08-27 -> 2018-10-06

---
 pkgs/games/gargoyle/darwin.patch | 133 +------------------------------
 pkgs/games/gargoyle/default.nix  |  23 +++---
 pkgs/top-level/all-packages.nix  |   2 +-
 3 files changed, 11 insertions(+), 147 deletions(-)

diff --git a/pkgs/games/gargoyle/darwin.patch b/pkgs/games/gargoyle/darwin.patch
index 230f453acad7..6958fe495d26 100644
--- a/pkgs/games/gargoyle/darwin.patch
+++ b/pkgs/games/gargoyle/darwin.patch
@@ -1,33 +1,3 @@
-diff --git a/Jamshared b/Jamshared
-index 13db835..fd42928 100644
---- a/Jamshared
-+++ b/Jamshared
-@@ -79,7 +79,7 @@ if $(OS) = MACOSX
- {
-     actions together SharedLink bind NEEDLIBS
-     {
--        $(LINK) -headerpad_max_install_names $(FRAMEWORKS) $(MAINARCH) $(ALTARCH) -dynamiclib $(SHRLINKFLAGS) -install_name @executable_path/$(<:D=) -o $(<) $(>) $(NEEDLIBS) $(SHRLINKLIBS)
-+        $(LINK) $(FRAMEWORKS) $(MAINARCH) $(ALTARCH) -dynamiclib $(SHRLINKFLAGS) -install_name @executable_path/$(<:D=) -o $(<) $(>) $(NEEDLIBS) $(SHRLINKLIBS)
-     }
- }
- else
-diff --git a/tads/Jamfile b/tads/Jamfile
-index 1f8829d..d8455eb 100644
---- a/tads/Jamfile
-+++ b/tads/Jamfile
-@@ -33,8 +33,8 @@ if $(OS) = LINUX || $(OS) = SOLARIS
- 
- if $(OS) = MACOSX
- {
--    SubDirCcFlags -headerpad_max_install_names $(MAINARCH) $(ALTARCH) ;
--    LINKFLAGS = -headerpad_max_install_names $(MAINARCH) $(ALTARCH) ;
-+    SubDirCcFlags $(MAINARCH) $(ALTARCH) ;
-+    LINKFLAGS = $(MAINARCH) $(ALTARCH) ;
- }
- 
- SEARCH_SOURCE =
-diff --git a/garglk/fontmac.m b/garglk/fontmac.m
-index d6e1426..72304a3 100644
 --- a/garglk/fontmac.m
 +++ b/garglk/fontmac.m
 @@ -167,7 +167,7 @@ static void propfont(char *file, int style)
@@ -48,15 +18,6 @@ index d6e1426..72304a3 100644
          [fontFamilyDescriptor matchingFontDescriptorsWithMandatoryKeys: nil];
  
      for (NSFontDescriptor * sysfont in fontMatches)
-@@ -197,7 +197,7 @@ void fontreplace(char *font, int type)
- 
-         else if ([sysfont symbolicTraits] & NSFontItalicTrait)
-             style = FONTI;
--        
-+
-         /* find path for font */
-         CFURLRef urlRef = CTFontDescriptorCopyAttribute((CTFontDescriptorRef)sysfont, kCTFontURLAttribute);
-         if (!urlRef)
 @@ -259,7 +259,7 @@ void fontload(void)
  
      // obtain a list of all files in the Fonts directory
@@ -66,47 +27,9 @@ index d6e1426..72304a3 100644
  
      // create a collection to hold the registered font URLs
      gli_registered_fonts = [NSMutableArray new];
-diff --git a/garglk/launchmac.m b/garglk/launchmac.m
-index 68deca5..9f752ac 100644
 --- a/garglk/launchmac.m
 +++ b/garglk/launchmac.m
-@@ -72,14 +72,14 @@ char *winfilters[] =
-            height: (unsigned int) height
- {
-     [[self openGLContext] makeCurrentContext];
--    
-+
-     /* allocate new texture */
-     glDeleteTextures(1, &output);
-     glGenTextures(1, &output);
- 
-     /* bind target to texture */
--    glEnable(GL_TEXTURE_RECTANGLE_ARB);    
--    glBindTexture(GL_TEXTURE_RECTANGLE_ARB, output);  
-+    glEnable(GL_TEXTURE_RECTANGLE_ARB);
-+    glBindTexture(GL_TEXTURE_RECTANGLE_ARB, output);
- 
-     /* set target parameters */
-     glTexParameteri(GL_TEXTURE_RECTANGLE_ARB, GL_TEXTURE_STORAGE_HINT_APPLE, GL_STORAGE_CACHED_APPLE);
-@@ -460,7 +460,7 @@ static BOOL isTextbufferEvent(NSEvent * evt)
-     if (filter != FILTER_ALL)
-     {
-         NSArray * filterTypes = [NSArray arrayWithObject: [NSString stringWithCString: winfilters[filter]
--                                                                             encoding: NSUTF8StringEncoding]];        
-+                                                                             encoding: NSUTF8StringEncoding]];
-         [openDlg setAllowedFileTypes: filterTypes];
-         [openDlg setAllowsOtherFileTypes: NO];
-     }
-@@ -485,7 +485,7 @@ static BOOL isTextbufferEvent(NSEvent * evt)
-     if (filter != FILTER_ALL)
-     {
-         NSArray * filterTypes = [NSArray arrayWithObject: [NSString stringWithCString: winfilters[filter]
--                                                                             encoding: NSUTF8StringEncoding]];        
-+                                                                             encoding: NSUTF8StringEncoding]];
-         [saveDlg setAllowedFileTypes: filterTypes];
-         [saveDlg setAllowsOtherFileTypes: NO];
-     }
-@@ -518,7 +518,7 @@ static BOOL isTextbufferEvent(NSEvent * evt)
+@@ -556,7 +556,7 @@ static BOOL isTextbufferEvent(NSEvent * evt)
                           <GargoyleApp, NSApplicationDelegate, NSWindowDelegate>
  {
      BOOL openedFirstGame;
@@ -115,34 +38,6 @@ index 68deca5..9f752ac 100644
      NSConnection * link;
  }
  - (BOOL) launchFile: (NSString *) file;
-@@ -760,20 +760,20 @@ static BOOL isTextbufferEvent(NSEvent * evt)
- - (BOOL) launchFileDialog
- {
-     int result;
--    
-+
-     NSOpenPanel * openDlg = [NSOpenPanel openPanel];
- 
-     [openDlg setCanChooseFiles: YES];
-     [openDlg setCanChooseDirectories: NO];
-     [openDlg setAllowsMultipleSelection: NO];
-     [openDlg setTitle: [NSString stringWithCString: AppName encoding: NSUTF8StringEncoding]];
--    
-+
-     NSMutableArray *filterTypes = [NSMutableArray arrayWithCapacity:100];
--    
--    NSEnumerator *docTypeEnum = [[[[NSBundle mainBundle] infoDictionary] 
-+
-+    NSEnumerator *docTypeEnum = [[[[NSBundle mainBundle] infoDictionary]
-                                   objectForKey:@"CFBundleDocumentTypes"] objectEnumerator];
-     NSDictionary *docType;
--    
-+
-     while (docType = [docTypeEnum nextObject])
-     {
-         [filterTypes addObjectsFromArray:[docType objectForKey: @"CFBundleTypeExtensions"]];
-diff --git a/garglk/ttsmac.m b/garglk/ttsmac.m
-index 9f6ab0e..de3d6fe 100644
 --- a/garglk/ttsmac.m
 +++ b/garglk/ttsmac.m
 @@ -30,7 +30,7 @@
@@ -167,29 +62,3 @@ index 9f6ab0e..de3d6fe 100644
                  if ([lang isEqualToString: [attr objectForKey: NSVoiceLocaleIdentifier]])
                  {
                      [synth setVoice: voice];
-diff --git a/tads/tads3/vmtz.cpp b/tads/tads3/vmtz.cpp
-index 5e193a1..dce46f7 100644
---- a/tads/tads3/vmtz.cpp
-+++ b/tads/tads3/vmtz.cpp
-@@ -1985,5 +1985,5 @@ void CVmTimeZone::query(vmtzquery *result, int32_t dayno, int32_t daytime,
-              *   up until that moment
-              */
--            result->set(tcur > 0 ? tcur - 1 : tcur);
-+            result->set(tcur != 0 ? tcur - 1 : tcur);
-            return;
-        }
-diff --git a/terps/Jamfile b/terps/Jamfile
-index b5f6d52..2d1ccdb 100644
---- a/terps/Jamfile
-+++ b/terps/Jamfile
-@@ -185,8 +185,8 @@ if $(MAKE_GEAS) = yes
- 
-     if $(OS) = MACOSX
-     {
--        SubDirCcFlags -headerpad_max_install_names $(MAINARCH) $(ALTARCH) ;
--        LINKFLAGS = -headerpad_max_install_names $(MAINARCH) $(ALTARCH) ;
-+        SubDirCcFlags $(MAINARCH) $(ALTARCH) ;
-+        LINKFLAGS = $(MAINARCH) $(ALTARCH) ;
-     }
- 
-     SUBDIRC++FLAGS = $(SUBDIRCCFLAGS) ;
diff --git a/pkgs/games/gargoyle/default.nix b/pkgs/games/gargoyle/default.nix
index fc02bdffcad8..5bf0ae1c814a 100644
--- a/pkgs/games/gargoyle/default.nix
+++ b/pkgs/games/gargoyle/default.nix
@@ -1,4 +1,5 @@
-{ stdenv, fetchFromGitHub, jam, libtool, pkgconfig, gtk2, SDL, SDL_mixer, SDL_sound, smpeg, libvorbis }:
+{ stdenv, lib, fetchFromGitHub, jam, cctools, pkgconfig
+, SDL, SDL_mixer, SDL_sound, cf-private, gtk2, libvorbis, smpeg }:
 
 let
 
@@ -19,28 +20,22 @@ let
 in
 
 stdenv.mkDerivation {
-  name = "gargoyle-2017-08-27";
+  name = "gargoyle-2018-10-06";
 
   src = fetchFromGitHub {
     owner = "garglk";
     repo = "garglk";
-    rev = "65c95166f53adaa2e5e1a5e0d8a34e9219d06de6";
-    sha256 = "1agnap38qdf2n1v37ka3ky44j56yhvln4lzf13diyqhjmh9lvfq5";
+    rev = "d03391563fa75942fbf8f8deeeacf3a8be9fc3b0";
+    sha256 = "0icwgc25gp7krq6zf66hljydc6vps6bb4knywnrfgnfcmcalqqx9";
   };
 
-  nativeBuildInputs = [ jam pkgconfig ] ++ stdenv.lib.optional stdenv.isDarwin libtool;
+  nativeBuildInputs = [ jam pkgconfig ] ++ lib.optional stdenv.isDarwin cctools;
 
-  buildInputs = [ gtk2 SDL SDL_mixer ] ++ (
-    if stdenv.isDarwin then [ smpeg libvorbis ] else [ SDL_sound ]
-  );
+  buildInputs = [ SDL SDL_mixer SDL_sound gtk2 ]
+    ++ lib.optionals stdenv.isDarwin [ cf-private smpeg libvorbis ];
 
   patches = [ ./darwin.patch ];
 
-  postPatch = ''
-    substituteInPlace Jamrules \
-        --replace -mmacosx-version-min=10.7 -mmacosx-version-min=$MACOSX_DEPLOYMENT_TARGET
-  '';
-
   buildPhase = jamenv + "jam -j$NIX_BUILD_CORES";
 
   installPhase = if stdenv.isDarwin then (builtins.readFile ./darwin.sh) else jamenv + ''
@@ -57,7 +52,7 @@ stdenv.mkDerivation {
 
   enableParallelBuilding = true;
 
-  meta = with stdenv.lib; {
+  meta = with lib; {
     homepage = http://ccxvii.net/gargoyle/;
     license = licenses.gpl2Plus;
     description = "Interactive fiction interpreter GUI";
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 25e26da93e86..ed395ea8d4ad 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -20362,7 +20362,7 @@ with pkgs;
   garden-of-coloured-lights = callPackage ../games/garden-of-coloured-lights { allegro = allegro4; };
 
   gargoyle = callPackage ../games/gargoyle {
-    libtool = darwin.cctools;
+    inherit (darwin) cctools cf-private;
   };
 
   gav = callPackage ../games/gav { };

From 53022223373ff40b45b6e4fe69720f11422d302e Mon Sep 17 00:00:00 2001
From: ryan4729 <ryan4729@example.com>
Date: Sat, 10 Nov 2018 22:41:46 -0800
Subject: [PATCH 1002/1129] go: make compiler usable for cross compiles

---
 pkgs/development/compilers/go/1.11.nix | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/pkgs/development/compilers/go/1.11.nix b/pkgs/development/compilers/go/1.11.nix
index f58e0801030e..59716fbcdb69 100644
--- a/pkgs/development/compilers/go/1.11.nix
+++ b/pkgs/development/compilers/go/1.11.nix
@@ -133,12 +133,12 @@ stdenv.mkDerivation rec {
 
   GOOS = if stdenv.isDarwin then "darwin" else "linux";
   GOARCH = if stdenv.isDarwin then "amd64"
-           else if stdenv.targetPlatform.isi686 then "386"
-           else if stdenv.targetPlatform.isx86_64 then "amd64"
-           else if stdenv.targetPlatform.isAarch32 then "arm"
-           else if stdenv.targetPlatform.isAarch64 then "arm64"
+           else if stdenv.hostPlatform.isi686 then "386"
+           else if stdenv.hostPlatform.isx86_64 then "amd64"
+           else if stdenv.hostPlatform.isAarch32 then "arm"
+           else if stdenv.hostPlatform.isAarch64 then "arm64"
            else throw "Unsupported system";
-  GOARM = toString (stdenv.lib.intersectLists [(stdenv.targetPlatform.parsed.cpu.version or "")] ["5" "6" "7"]);
+  GOARM = toString (stdenv.lib.intersectLists [(stdenv.hostPlatform.parsed.cpu.version or "")] ["5" "6" "7"]);
   GO386 = 387; # from Arch: don't assume sse2 on i686
   CGO_ENABLED = 1;
   GOROOT_BOOTSTRAP = "${goBootstrap}/share/go";

From 6c7ff0cca82d3759550669a1fb7a0e1d0479a38d Mon Sep 17 00:00:00 2001
From: fuwa <echowss@gmail.com>
Date: Sun, 11 Nov 2018 14:39:25 +0800
Subject: [PATCH 1003/1129] maintainers: add fuwa

---
 maintainers/maintainer-list.nix | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index 22ea07b9f118..fc9ee84c4c98 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -1511,6 +1511,11 @@
     github = "fuuzetsu";
     name = "Mateusz Kowalczyk";
   };
+  fuwa = {
+    email = "echowss@gmail.com";
+    github = "fuwa0529";
+    name = "Haruka Akiyama";
+  };
   fuzzy-id = {
     email = "hacking+nixos@babibo.de";
     name = "Thomas Bach";

From 931ebbc77a45fe36c55deba51de7c259666bf678 Mon Sep 17 00:00:00 2001
From: fuwa <echowss@gmail.com>
Date: Sun, 11 Nov 2018 14:40:25 +0800
Subject: [PATCH 1004/1129] wownero: init at 0.4.0.0

---
 pkgs/applications/altcoins/default.nix |  4 ++
 pkgs/applications/altcoins/wownero.nix | 51 ++++++++++++++++++++++++++
 2 files changed, 55 insertions(+)
 create mode 100644 pkgs/applications/altcoins/wownero.nix

diff --git a/pkgs/applications/altcoins/default.nix b/pkgs/applications/altcoins/default.nix
index 87f5d0be68a3..bc55f85b10d4 100644
--- a/pkgs/applications/altcoins/default.nix
+++ b/pkgs/applications/altcoins/default.nix
@@ -81,6 +81,10 @@ rec {
 
   sumokoin = callPackage ./sumokoin.nix { };
 
+  wownero = callPackage ./wownero.nix {
+    inherit (darwin.apple_sdk.frameworks) CoreData IOKit PCSC;
+  };
+
   zcash = callPackage ./zcash {
     withGui = false;
     openssl = openssl_1_1;
diff --git a/pkgs/applications/altcoins/wownero.nix b/pkgs/applications/altcoins/wownero.nix
new file mode 100644
index 000000000000..4b62ba759f36
--- /dev/null
+++ b/pkgs/applications/altcoins/wownero.nix
@@ -0,0 +1,51 @@
+{ stdenv, fetchFromGitHub, cmake, pkgconfig, git
+, boost, miniupnpc, openssl, unbound, cppzmq
+, zeromq, pcsclite, readline, libsodium
+, CoreData, IOKit, PCSC
+}:
+
+assert stdenv.isDarwin -> IOKit != null;
+
+with stdenv.lib;
+
+stdenv.mkDerivation rec {
+  name = "wownero-${version}";
+
+  version = "0.4.0.0";
+  src = fetchFromGitHub {
+    owner = "wownero";
+    repo = "wownero";
+    fetchSubmodules = true;
+    rev    = "v${version}";
+    sha256 = "1z5fpl4gwys4v8ffrymlzwrbnrbg73x553a9lxwny7ba8yg2k14p";
+  };
+
+  nativeBuildInputs = [ cmake pkgconfig git ];
+
+  buildInputs = [
+    boost miniupnpc openssl unbound
+    cppzmq zeromq pcsclite readline libsodium
+  ] ++ optionals stdenv.isDarwin [ IOKit CoreData PCSC ];
+
+  cmakeFlags = [
+    "-DReadline_ROOT_DIR=${readline.dev}"
+    "-DMANUAL_SUBMODULES=ON"
+  ] ++ optional stdenv.isDarwin "-DBoost_USE_MULTITHREADED=OFF";
+
+  hardeningDisable = [ "fortify" ];
+
+  meta = {
+    description = "Wownero is a fork of the cryptocurrency Monero with primary alterations";
+    longDescription = ''
+      Wownero’s emission is capped and supply is finite. Wownero is a fairly
+      launched coin with no premine. It’s not a fork of another blockchain. With
+      its own genesis block there is no degradation of privacy caused by ring
+      signatures using different participants for the same transaction outputs.
+      Unlike opposing forks.
+    '';
+    homepage    = http://wownero.org/;
+    license     = licenses.bsd3;
+    platforms   = platforms.all;
+    maintainers = with maintainers; [ fuwa ];
+  };
+}

From 9d164580ba468efb1ec1b892ee5fc49109c33112 Mon Sep 17 00:00:00 2001
From: volth <volth@volth.com>
Date: Sun, 11 Nov 2018 06:57:28 +0000
Subject: [PATCH 1005/1129] gnused: fix Windows build

---
 pkgs/tools/text/gnused/422.nix     | 2 ++
 pkgs/tools/text/gnused/default.nix | 2 +-
 pkgs/top-level/all-packages.nix    | 5 ++++-
 3 files changed, 7 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/text/gnused/422.nix b/pkgs/tools/text/gnused/422.nix
index 037c2f17a63b..16d4f20fe8e7 100644
--- a/pkgs/tools/text/gnused/422.nix
+++ b/pkgs/tools/text/gnused/422.nix
@@ -8,6 +8,8 @@ stdenv.mkDerivation {
     sha256 = "f048d1838da284c8bc9753e4506b85a1e0cc1ea8999d36f6995bcb9460cddbd7";
   };
 
+  configureFlags = stdenv.lib.optional stdenv.hostPlatform.isMinGW "ac_cv_func__set_invalid_parameter_handler=no";
+
   outputs = [ "out" "info" ];
 
   meta = {
diff --git a/pkgs/tools/text/gnused/default.nix b/pkgs/tools/text/gnused/default.nix
index af3db54e96d5..4bdddb8c50b7 100644
--- a/pkgs/tools/text/gnused/default.nix
+++ b/pkgs/tools/text/gnused/default.nix
@@ -32,7 +32,7 @@ stdenv.mkDerivation rec {
 
     license = stdenv.lib.licenses.gpl3Plus;
 
-    platforms = stdenv.lib.platforms.all;
+    platforms = stdenv.lib.platforms.unix;
     maintainers = [ ];
   };
 }
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index ed395ea8d4ad..222d73f40051 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -2964,7 +2964,10 @@ with pkgs;
 
   gnu-pw-mgr = callPackage ../tools/security/gnu-pw-mgr { };
 
-  gnused = callPackage ../tools/text/gnused { };
+  gnused = if !stdenv.hostPlatform.isWindows then
+             callPackage ../tools/text/gnused { } # broken on Windows
+           else
+             gnused_422;
   # This is an easy work-around for [:space:] problems.
   gnused_422 = callPackage ../tools/text/gnused/422.nix { };
 

From baeb8bd5a7cf4b9352ba4f0ca8d5c52f478ad915 Mon Sep 17 00:00:00 2001
From: Jethro Kuan <jethrokuan95@gmail.com>
Date: Sat, 3 Nov 2018 17:24:30 +0800
Subject: [PATCH 1006/1129] gin-config: init

---
 .../python-modules/gin-config/default.nix     | 29 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 31 insertions(+)
 create mode 100644 pkgs/development/python-modules/gin-config/default.nix

diff --git a/pkgs/development/python-modules/gin-config/default.nix b/pkgs/development/python-modules/gin-config/default.nix
new file mode 100644
index 000000000000..44ae1bd30af3
--- /dev/null
+++ b/pkgs/development/python-modules/gin-config/default.nix
@@ -0,0 +1,29 @@
+{ lib
+, buildPythonPackage
+, fetchPypi
+, six
+, enum34
+, absl-py
+, tensorflow
+}:
+
+buildPythonPackage rec {
+  pname = "gin-config";
+  version = "0.1.1.2";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "1zqzhg8nqdqjx0sjrsrs9bpyiaqqlyihqhhy2ijrpp62x9rjllga";
+
+  };
+
+  buildInputs = [ six enum34 tensorflow ];
+  checkInputs = [ absl-py tensorflow ];
+
+  meta = with lib; {
+    homepage = https://github.com/google/gin-config;
+    description = "Gin provides a lightweight configuration framework for Python, based on dependency injection.";
+    license = licenses.asl20;
+    maintainers = with maintainers; [ jethrokuan ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index bf1f9ebdff5e..33ac0b0bb692 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -362,6 +362,8 @@ in {
 
   gidgethub = callPackage ../development/python-modules/gidgethub { };
 
+  gin-config = callPackage ../development/python-modules/gin-config { };
+
   globus-sdk = callPackage ../development/python-modules/globus-sdk { };
 
   goocalendar = callPackage ../development/python-modules/goocalendar { };

From f11cd8165d570b2512d467599f528e8e751abdfd Mon Sep 17 00:00:00 2001
From: Jethro Kuan <jethrokuan95@gmail.com>
Date: Sat, 3 Nov 2018 19:06:16 +0800
Subject: [PATCH 1007/1129] fix maintainer

---
 pkgs/development/python-modules/gin-config/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/gin-config/default.nix b/pkgs/development/python-modules/gin-config/default.nix
index 44ae1bd30af3..9203a6cf33ad 100644
--- a/pkgs/development/python-modules/gin-config/default.nix
+++ b/pkgs/development/python-modules/gin-config/default.nix
@@ -24,6 +24,6 @@ buildPythonPackage rec {
     homepage = https://github.com/google/gin-config;
     description = "Gin provides a lightweight configuration framework for Python, based on dependency injection.";
     license = licenses.asl20;
-    maintainers = with maintainers; [ jethrokuan ];
+    maintainers = with maintainers; [ jethro ];
   };
 }

From 78e557806e7bdd905a77c896d31a3365182b26c8 Mon Sep 17 00:00:00 2001
From: Jethro Kuan <jethrokuan95@gmail.com>
Date: Thu, 8 Nov 2018 22:06:13 +0800
Subject: [PATCH 1008/1129] add option to build without Tensorflow

---
 pkgs/development/python-modules/gin-config/default.nix | 3 ++-
 1 file changed, 2 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/gin-config/default.nix b/pkgs/development/python-modules/gin-config/default.nix
index 9203a6cf33ad..d1852a1392af 100644
--- a/pkgs/development/python-modules/gin-config/default.nix
+++ b/pkgs/development/python-modules/gin-config/default.nix
@@ -5,6 +5,7 @@
 , enum34
 , absl-py
 , tensorflow
+, withTensorflow ? true
 }:
 
 buildPythonPackage rec {
@@ -17,7 +18,7 @@ buildPythonPackage rec {
 
   };
 
-  buildInputs = [ six enum34 tensorflow ];
+  propogatedBuildInputs = [ six enum34 ] + lib.optional withTensorflow tensorflow;
   checkInputs = [ absl-py tensorflow ];
 
   meta = with lib; {

From 32d8215a5825084545746afe5338e0edb30e3c7b Mon Sep 17 00:00:00 2001
From: Maximilian Bosch <maximilian@mbosch.me>
Date: Thu, 8 Nov 2018 15:17:32 +0100
Subject: [PATCH 1009/1129] fix eval

---
 pkgs/development/python-modules/gin-config/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/gin-config/default.nix b/pkgs/development/python-modules/gin-config/default.nix
index d1852a1392af..70e79eeebbb6 100644
--- a/pkgs/development/python-modules/gin-config/default.nix
+++ b/pkgs/development/python-modules/gin-config/default.nix
@@ -18,7 +18,7 @@ buildPythonPackage rec {
 
   };
 
-  propogatedBuildInputs = [ six enum34 ] + lib.optional withTensorflow tensorflow;
+  propogatedBuildInputs = [ six enum34 ] ++ lib.optional withTensorflow tensorflow;
   checkInputs = [ absl-py tensorflow ];
 
   meta = with lib; {

From 2b4a70d21e0f1c49bb5ba52a1de8878b2220735d Mon Sep 17 00:00:00 2001
From: Jethro Kuan <jethrokuan95@gmail.com>
Date: Fri, 9 Nov 2018 07:55:24 +0800
Subject: [PATCH 1010/1129] remove withTensorflow option

---
 pkgs/development/python-modules/gin-config/default.nix | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/gin-config/default.nix b/pkgs/development/python-modules/gin-config/default.nix
index 70e79eeebbb6..30dd14390c95 100644
--- a/pkgs/development/python-modules/gin-config/default.nix
+++ b/pkgs/development/python-modules/gin-config/default.nix
@@ -5,7 +5,6 @@
 , enum34
 , absl-py
 , tensorflow
-, withTensorflow ? true
 }:
 
 buildPythonPackage rec {
@@ -18,7 +17,7 @@ buildPythonPackage rec {
 
   };
 
-  propogatedBuildInputs = [ six enum34 ] ++ lib.optional withTensorflow tensorflow;
+  propogatedBuildInputs = [ six enum34 tensorflow ];
   checkInputs = [ absl-py tensorflow ];
 
   meta = with lib; {

From c98731b8fa9ed539100776dc65347350ca6a5b64 Mon Sep 17 00:00:00 2001
From: Jethro Kuan <jethrokuan95@gmail.com>
Date: Fri, 9 Nov 2018 21:24:34 +0800
Subject: [PATCH 1011/1129] don't propogate tensorflow

---
 pkgs/development/python-modules/gin-config/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/gin-config/default.nix b/pkgs/development/python-modules/gin-config/default.nix
index 30dd14390c95..49311fae9e83 100644
--- a/pkgs/development/python-modules/gin-config/default.nix
+++ b/pkgs/development/python-modules/gin-config/default.nix
@@ -17,7 +17,7 @@ buildPythonPackage rec {
 
   };
 
-  propogatedBuildInputs = [ six enum34 tensorflow ];
+  propogatedBuildInputs = [ six enum34 ];
   checkInputs = [ absl-py tensorflow ];
 
   meta = with lib; {

From 5165ecb7f6b25e7368ec57ccb06da8127dc108db Mon Sep 17 00:00:00 2001
From: Jethro Kuan <jethrokuan95@gmail.com>
Date: Sat, 10 Nov 2018 23:13:04 +0800
Subject: [PATCH 1012/1129] remove tests

PyPI archive does not contain tests
---
 pkgs/development/python-modules/gin-config/default.nix | 5 +++--
 1 file changed, 3 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/gin-config/default.nix b/pkgs/development/python-modules/gin-config/default.nix
index 49311fae9e83..97388c661fe6 100644
--- a/pkgs/development/python-modules/gin-config/default.nix
+++ b/pkgs/development/python-modules/gin-config/default.nix
@@ -4,7 +4,6 @@
 , six
 , enum34
 , absl-py
-, tensorflow
 }:
 
 buildPythonPackage rec {
@@ -18,7 +17,9 @@ buildPythonPackage rec {
   };
 
   propogatedBuildInputs = [ six enum34 ];
-  checkInputs = [ absl-py tensorflow ];
+
+  # PyPI archive does not ship with tests
+  doCheck= false;
 
   meta = with lib; {
     homepage = https://github.com/google/gin-config;

From 3723b2d8abfd9561c412800186b709c8f58685aa Mon Sep 17 00:00:00 2001
From: Jethro Kuan <jethrokuan95@gmail.com>
Date: Sun, 11 Nov 2018 00:10:59 +0800
Subject: [PATCH 1013/1129] remove absl-py, change to buildInputs

---
 pkgs/development/python-modules/gin-config/default.nix | 3 +--
 1 file changed, 1 insertion(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/gin-config/default.nix b/pkgs/development/python-modules/gin-config/default.nix
index 97388c661fe6..ee0113c331fc 100644
--- a/pkgs/development/python-modules/gin-config/default.nix
+++ b/pkgs/development/python-modules/gin-config/default.nix
@@ -3,7 +3,6 @@
 , fetchPypi
 , six
 , enum34
-, absl-py
 }:
 
 buildPythonPackage rec {
@@ -16,7 +15,7 @@ buildPythonPackage rec {
 
   };
 
-  propogatedBuildInputs = [ six enum34 ];
+  buildInputs = [ six enum34 ];
 
   # PyPI archive does not ship with tests
   doCheck= false;

From 0a82eb43775ef351b1ec6223e11abcd09d14c829 Mon Sep 17 00:00:00 2001
From: Jethro Kuan <jethrokuan95@gmail.com>
Date: Sun, 11 Nov 2018 10:36:39 +0800
Subject: [PATCH 1014/1129] change to propogatedBuildInputs

---
 pkgs/development/python-modules/gin-config/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/gin-config/default.nix b/pkgs/development/python-modules/gin-config/default.nix
index ee0113c331fc..8aec7316acee 100644
--- a/pkgs/development/python-modules/gin-config/default.nix
+++ b/pkgs/development/python-modules/gin-config/default.nix
@@ -15,7 +15,7 @@ buildPythonPackage rec {
 
   };
 
-  buildInputs = [ six enum34 ];
+  propogatedBuildInputs = [ six enum34 ];
 
   # PyPI archive does not ship with tests
   doCheck= false;

From 3c4f70996e46ed7e9c3a480f51398194d31e3e93 Mon Sep 17 00:00:00 2001
From: Maximilian Bosch <maximilian@mbosch.me>
Date: Sun, 11 Nov 2018 04:35:28 +0100
Subject: [PATCH 1015/1129] s/propogatedBuildInputs/propagatedBuildInputs

---
 pkgs/development/python-modules/gin-config/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/development/python-modules/gin-config/default.nix b/pkgs/development/python-modules/gin-config/default.nix
index 8aec7316acee..3a854646021f 100644
--- a/pkgs/development/python-modules/gin-config/default.nix
+++ b/pkgs/development/python-modules/gin-config/default.nix
@@ -15,7 +15,7 @@ buildPythonPackage rec {
 
   };
 
-  propogatedBuildInputs = [ six enum34 ];
+  propagatedBuildInputs = [ six enum34 ];
 
   # PyPI archive does not ship with tests
   doCheck= false;

From 961180afc8ef4efd94487e2fc9d86b10a6099d93 Mon Sep 17 00:00:00 2001
From: Frederik Rietdijk <fridh@fridh.nl>
Date: Sun, 11 Nov 2018 09:54:28 +0100
Subject: [PATCH 1016/1129] scour: call via python-packages.nix

---
 .../python-modules}/scour/default.nix                | 12 ++++++------
 pkgs/top-level/all-packages.nix                      |  2 +-
 pkgs/top-level/python-packages.nix                   |  2 ++
 3 files changed, 9 insertions(+), 7 deletions(-)
 rename pkgs/{tools/graphics => development/python-modules}/scour/default.nix (73%)

diff --git a/pkgs/tools/graphics/scour/default.nix b/pkgs/development/python-modules/scour/default.nix
similarity index 73%
rename from pkgs/tools/graphics/scour/default.nix
rename to pkgs/development/python-modules/scour/default.nix
index 11932aabe0bb..7c198519331b 100644
--- a/pkgs/tools/graphics/scour/default.nix
+++ b/pkgs/development/python-modules/scour/default.nix
@@ -1,8 +1,6 @@
-{ stdenv, python3 }:
+{ lib, buildPythonPackage, fetchPypi, six }:
 
-with python3.pkgs;
-
-buildPythonApplication rec {
+buildPythonPackage rec {
   pname = "scour";
   version = "0.37";
 
@@ -13,11 +11,13 @@ buildPythonApplication rec {
 
   propagatedBuildInputs = [ six ];
 
-  meta = with stdenv.lib; {
+  # No tests included in archive
+  doCheck = false;
+
+  meta = with lib; {
     description = "An SVG Optimizer / Cleaner ";
     homepage    = https://github.com/scour-project/scour;
     license     = licenses.asl20;
     maintainers = with maintainers; [ worldofpeace ];
-    platforms   = platforms.unix;
   };
 }
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index ed395ea8d4ad..1808dcf281e4 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -1585,7 +1585,7 @@ with pkgs;
 
   parallel-rust = callPackage ../tools/misc/parallel-rust { };
 
-  scour = callPackage ../tools/graphics/scour { };
+  scour = with python3Packages; toPythonApplication scour;
 
   s2png = callPackage ../tools/graphics/s2png { };
 
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 33ac0b0bb692..f817cb3d0617 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -11076,6 +11076,8 @@ EOF
     inherit python;
   })).python;
 
+  scour = callPackage ../development/python-modules/scour { };
+
 });
 
 in fix' (extends overrides packages)

From 880fae6a084a66dae6d92dd5fe4416bd4eed4978 Mon Sep 17 00:00:00 2001
From: Sebastien Maret <sebastien.maret@univ-grenoble-alpes.fr>
Date: Sat, 3 Nov 2018 13:40:48 +0100
Subject: [PATCH 1017/1129] matplotlib: 2.2.3 -> 3.0.2

Python 3 will use the new matplotlib 3.x while Python 2
will use 2.x.

matplotlib: keep 2.2.3 for Python2k
---
 .../python-modules/matplotlib/2.nix           | 91 +++++++++++++++++++
 .../matplotlib/darwin-stdenv-2.2.3.patch      | 10 ++
 .../matplotlib/darwin-stdenv.patch            | 14 +--
 .../python-modules/matplotlib/default.nix     | 16 ++--
 pkgs/top-level/python-packages.nix            |  6 +-
 5 files changed, 121 insertions(+), 16 deletions(-)
 create mode 100644 pkgs/development/python-modules/matplotlib/2.nix
 create mode 100644 pkgs/development/python-modules/matplotlib/darwin-stdenv-2.2.3.patch

diff --git a/pkgs/development/python-modules/matplotlib/2.nix b/pkgs/development/python-modules/matplotlib/2.nix
new file mode 100644
index 000000000000..f073e7baa4ed
--- /dev/null
+++ b/pkgs/development/python-modules/matplotlib/2.nix
@@ -0,0 +1,91 @@
+{ stdenv, fetchPypi, python, buildPythonPackage, pycairo, backports_functools_lru_cache
+, which, cycler, dateutil, nose, numpy, pyparsing, sphinx, tornado, kiwisolver
+, freetype, libpng, pkgconfig, mock, pytz, pygobject3, functools32, subprocess32
+, enableGhostscript ? false, ghostscript ? null, gtk3
+, enableGtk2 ? false, pygtk ? null, gobjectIntrospection
+, enableGtk3 ? false, cairo
+, enableTk ? false, tcl ? null, tk ? null, tkinter ? null, libX11 ? null
+, enableQt ? false, pyqt4
+, libcxx
+, Cocoa
+, pythonOlder
+}:
+
+assert enableGhostscript -> ghostscript != null;
+assert enableGtk2 -> pygtk != null;
+assert enableTk -> (tcl != null)
+                && (tk != null)
+                && (tkinter != null)
+                && (libX11 != null)
+                ;
+assert enableQt -> pyqt4 != null;
+
+buildPythonPackage rec {
+  version = "2.2.3";
+  pname = "matplotlib";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "7355bf757ecacd5f0ac9dd9523c8e1a1103faadf8d33c22664178e17533f8ce5";
+  };
+
+  NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.isDarwin "-I${libcxx}/include/c++/v1";
+
+  XDG_RUNTIME_DIR = "/tmp";
+
+  buildInputs = [ python which sphinx stdenv ]
+    ++ stdenv.lib.optional enableGhostscript ghostscript
+    ++ stdenv.lib.optional stdenv.isDarwin [ Cocoa ];
+
+  propagatedBuildInputs =
+    [ cycler dateutil nose numpy pyparsing tornado freetype kiwisolver
+      libpng pkgconfig mock pytz ]
+    ++ stdenv.lib.optional (pythonOlder "3.3") backports_functools_lru_cache
+    ++ stdenv.lib.optional enableGtk2 pygtk
+    ++ stdenv.lib.optionals enableGtk3 [ cairo pycairo gtk3 gobjectIntrospection pygobject3 ]
+    ++ stdenv.lib.optionals enableTk [ tcl tk tkinter libX11 ]
+    ++ stdenv.lib.optionals enableQt [ pyqt4 ]
+    ++ stdenv.lib.optionals (builtins.hasAttr "isPy2" python) [ functools32 subprocess32 ];
+
+  patches =
+    [ ./basedirlist.patch ] ++
+    stdenv.lib.optionals stdenv.isDarwin [ ./darwin-stdenv-2.2.3.patch ];
+
+  # Matplotlib tries to find Tcl/Tk by opening a Tk window and asking the
+  # corresponding interpreter object for its library paths. This fails if
+  # `$DISPLAY` is not set. The fallback option assumes that Tcl/Tk are both
+  # installed under the same path which is not true in Nix.
+  # With the following patch we just hard-code these paths into the install
+  # script.
+  postPatch =
+    let
+      inherit (stdenv.lib.strings) substring;
+      tcl_tk_cache = ''"${tk}/lib", "${tcl}/lib", "${substring 0 3 tk.version}"'';
+    in
+    stdenv.lib.optionalString enableTk
+      "sed -i '/self.tcl_tk_cache = None/s|None|${tcl_tk_cache}|' setupext.py";
+
+  checkPhase = ''
+    ${python.interpreter} tests.py
+  '';
+
+  # Test data is not included in the distribution (the `tests` folder
+  # is missing)
+  doCheck = false;
+
+  prePatch = ''
+    # Failing test: ERROR: matplotlib.tests.test_style.test_use_url
+    sed -i 's/test_use_url/fails/' lib/matplotlib/tests/test_style.py
+    # Failing test: ERROR: test suite for <class 'matplotlib.sphinxext.tests.test_tinypages.TestTinyPages'>
+    sed -i 's/TestTinyPages/fails/' lib/matplotlib/sphinxext/tests/test_tinypages.py
+    # Transient errors
+    sed -i 's/test_invisible_Line_rendering/noop/' lib/matplotlib/tests/test_lines.py
+  '';
+
+  meta = with stdenv.lib; {
+    description = "Python plotting library, making publication quality plots";
+    homepage    = "https://matplotlib.org/";
+    maintainers = with maintainers; [ lovek323 ];
+  };
+
+}
diff --git a/pkgs/development/python-modules/matplotlib/darwin-stdenv-2.2.3.patch b/pkgs/development/python-modules/matplotlib/darwin-stdenv-2.2.3.patch
new file mode 100644
index 000000000000..ca399b4e6841
--- /dev/null
+++ b/pkgs/development/python-modules/matplotlib/darwin-stdenv-2.2.3.patch
@@ -0,0 +1,10 @@
+--- a/src/_macosx.m	2015-10-30 00:46:20.000000000 +0200
++++ b/src/_macosx.m	2015-11-01 14:52:25.000000000 +0200
+@@ -6264,6 +6264,7 @@
+ 
+ static bool verify_framework(void)
+ {
++    return true;  /* nixpkgs darwin stdenv */
+ #ifdef COMPILING_FOR_10_6
+     NSRunningApplication* app = [NSRunningApplication currentApplication];
+     NSApplicationActivationPolicy activationPolicy = [app activationPolicy];
diff --git a/pkgs/development/python-modules/matplotlib/darwin-stdenv.patch b/pkgs/development/python-modules/matplotlib/darwin-stdenv.patch
index ca399b4e6841..27ed8fc9f964 100644
--- a/pkgs/development/python-modules/matplotlib/darwin-stdenv.patch
+++ b/pkgs/development/python-modules/matplotlib/darwin-stdenv.patch
@@ -1,10 +1,12 @@
---- a/src/_macosx.m	2015-10-30 00:46:20.000000000 +0200
-+++ b/src/_macosx.m	2015-11-01 14:52:25.000000000 +0200
-@@ -6264,6 +6264,7 @@
+diff -ruN matplotlib-3.0.0/src/_macosx.m matplotlib-3.0.0.patched/src/_macosx.m
+--- matplotlib-3.0.0/src/_macosx.m	2018-09-16 00:35:21.000000000 +0200
++++ matplotlib-3.0.0.patched/src/_macosx.m	2018-11-03 13:14:33.000000000 +0100
+@@ -2577,6 +2577,7 @@
  
  static bool verify_framework(void)
  {
 +    return true;  /* nixpkgs darwin stdenv */
- #ifdef COMPILING_FOR_10_6
-     NSRunningApplication* app = [NSRunningApplication currentApplication];
-     NSApplicationActivationPolicy activationPolicy = [app activationPolicy];
+     ProcessSerialNumber psn;
+     /* These methods are deprecated, but they don't require the app to
+        have started  */
+
diff --git a/pkgs/development/python-modules/matplotlib/default.nix b/pkgs/development/python-modules/matplotlib/default.nix
index f9aa8cb2ebea..2cd7557bac7c 100644
--- a/pkgs/development/python-modules/matplotlib/default.nix
+++ b/pkgs/development/python-modules/matplotlib/default.nix
@@ -1,7 +1,7 @@
-{ stdenv, fetchPypi, python, buildPythonPackage, pycairo, backports_functools_lru_cache
+{ stdenv, fetchPypi, python, buildPythonPackage, isPy3k, pycairo, backports_functools_lru_cache
 , which, cycler, dateutil, nose, numpy, pyparsing, sphinx, tornado, kiwisolver
 , freetype, libpng, pkgconfig, mock, pytz, pygobject3, functools32, subprocess32
-, enableGhostscript ? false, ghostscript ? null, gtk3
+, enableGhostscript ? true, ghostscript ? null, gtk3
 , enableGtk2 ? false, pygtk ? null, gobjectIntrospection
 , enableGtk3 ? false, cairo
 , enableTk ? false, tcl ? null, tk ? null, tkinter ? null, libX11 ? null
@@ -21,12 +21,14 @@ assert enableTk -> (tcl != null)
 assert enableQt -> pyqt4 != null;
 
 buildPythonPackage rec {
-  version = "2.2.3";
+  version = "3.0.2";
   pname = "matplotlib";
 
+  disabled = !isPy3k;
+
   src = fetchPypi {
     inherit pname version;
-    sha256 = "7355bf757ecacd5f0ac9dd9523c8e1a1103faadf8d33c22664178e17533f8ce5";
+    sha256 = "c94b792af431f6adb6859eb218137acd9a35f4f7442cea57e4a59c54751c36af";
   };
 
   NIX_CFLAGS_COMPILE = stdenv.lib.optionalString stdenv.isDarwin "-I${libcxx}/include/c++/v1";
@@ -44,8 +46,7 @@ buildPythonPackage rec {
     ++ stdenv.lib.optional enableGtk2 pygtk
     ++ stdenv.lib.optionals enableGtk3 [ cairo pycairo gtk3 gobjectIntrospection pygobject3 ]
     ++ stdenv.lib.optionals enableTk [ tcl tk tkinter libX11 ]
-    ++ stdenv.lib.optionals enableQt [ pyqt4 ]
-    ++ stdenv.lib.optionals (builtins.hasAttr "isPy2" python) [ functools32 subprocess32 ];
+    ++ stdenv.lib.optionals enableQt [ pyqt4 ];
 
   patches =
     [ ./basedirlist.patch ] ++
@@ -84,9 +85,8 @@ buildPythonPackage rec {
 
   meta = with stdenv.lib; {
     description = "Python plotting library, making publication quality plots";
-    homepage    = "http://matplotlib.sourceforge.net/";
+    homepage    = "https://matplotlib.org/";
     maintainers = with maintainers; [ lovek323 ];
-    platforms   = platforms.unix;
   };
 
 }
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index f817cb3d0617..e4e561682bf0 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -2746,9 +2746,11 @@ in {
 
   mathics = callPackage ../development/python-modules/mathics { };
 
-  matplotlib = callPackage ../development/python-modules/matplotlib {
+  matplotlib = let
+    path = if isPy3k then ../development/python-modules/matplotlib/default.nix else
+      ../development/python-modules/matplotlib/2.nix;
+  in callPackage path {
     stdenv = if stdenv.isDarwin then pkgs.clangStdenv else pkgs.stdenv;
-    enableGhostscript = true;
     inherit (pkgs.darwin.apple_sdk.frameworks) Cocoa;
   };
 

From fb3d15c34c8661e64ffe077b95ad04d9f638dee2 Mon Sep 17 00:00:00 2001
From: nyanloutre <paul@nyanlout.re>
Date: Sun, 11 Nov 2018 10:51:06 +0100
Subject: [PATCH 1018/1129] spaceship-prompt: correct homepage url

---
 pkgs/shells/zsh/spaceship-prompt/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/shells/zsh/spaceship-prompt/default.nix b/pkgs/shells/zsh/spaceship-prompt/default.nix
index 312b1e79f49c..28b116523ac0 100644
--- a/pkgs/shells/zsh/spaceship-prompt/default.nix
+++ b/pkgs/shells/zsh/spaceship-prompt/default.nix
@@ -25,7 +25,7 @@ stdenv.mkDerivation rec{
 
   meta = with stdenv.lib; {
     description = "Zsh prompt for Astronauts";
-    homepage = https://github.com/halfo/lambda-mod-zsh-theme/;
+    homepage = https://github.com/denysdovhan/spaceship-prompt/;
     license = licenses.mit;
     platforms = platforms.linux;
     maintainers = with maintainers; [ nyanloutre ];

From 879789666ff71bb4306ed60ecec4a6c1ac89c2fa Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Sun, 11 Nov 2018 11:00:28 +0100
Subject: [PATCH 1019/1129] python.pkgs.py3status: 3.13 -> 3.14

---
 pkgs/development/python-modules/py3status/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/py3status/default.nix b/pkgs/development/python-modules/py3status/default.nix
index b580ae898502..edd98020f06d 100644
--- a/pkgs/development/python-modules/py3status/default.nix
+++ b/pkgs/development/python-modules/py3status/default.nix
@@ -19,11 +19,11 @@
 
 buildPythonPackage rec {
   pname = "py3status";
-  version = "3.13";
+  version = "3.14";
   
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b4262db0b3b181fbf1a44679cd817c1cf0126ec34b3537550e294208f413daac";
+    sha256 = "8775fb3903458a519593fc22b712ccac598464e319a12b9fdf04803fa60a1583";
   };
 
   doCheck = false;

From 0a7d20ece5f0d75e22cda4e2d665aec356310707 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Niklas=20Th=C3=B6rne?= <notrupertthorne@gmail.com>
Date: Sun, 11 Nov 2018 12:15:06 +0100
Subject: [PATCH 1020/1129] uftrace: 0.9 -> 0.9.1 (#50228)

---
 pkgs/development/tools/uftrace/default.nix | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

diff --git a/pkgs/development/tools/uftrace/default.nix b/pkgs/development/tools/uftrace/default.nix
index fa57ce9df21f..7d5569b4376b 100644
--- a/pkgs/development/tools/uftrace/default.nix
+++ b/pkgs/development/tools/uftrace/default.nix
@@ -1,14 +1,14 @@
-{stdenv, fetchFromGitHub }:
+{stdenv, fetchFromGitHub}:
 
 stdenv.mkDerivation rec {
   name = "uftrace-${version}";
-  version = "0.9";
+  version = "0.9.1";
 
   src = fetchFromGitHub {
     owner = "namhyung";
     repo = "uftrace";
-    rev = "f0fed0b24a9727ffed04673b62f66baad21a1f99";
-    sha256 = "0rn2xwd87qy5ihn5zq9pwq8cs1vfmcqqz0wl70wskkgp2ccsd9x8";
+    rev = "v${version}";
+    sha256 = "1jb4dp6crvfzxzmi5iflc7p13b7p2v1djyj6smbf9ns4wr515y6b";
   };
 
   postUnpack = ''
@@ -23,4 +23,3 @@ stdenv.mkDerivation rec {
     maintainers = [stdenv.lib.maintainers.nthorne];
   };
 }
-

From 7a86bc32cb6c038313890a09a1f6f4cc13c6f542 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Sat, 10 Nov 2018 14:00:32 +0000
Subject: [PATCH 1021/1129] docker-compose: rename from docker_compose, python3
 by default

The command is called docker-compose hence the package should be called the same.
Also prefer python3.
---
 .../virtualization/docker-compose}/default.nix                  | 0
 pkgs/top-level/aliases.nix                                      | 1 +
 pkgs/top-level/all-packages.nix                                 | 2 +-
 pkgs/top-level/python-packages.nix                              | 2 --
 4 files changed, 2 insertions(+), 3 deletions(-)
 rename pkgs/{development/python-modules/docker_compose => applications/virtualization/docker-compose}/default.nix (100%)

diff --git a/pkgs/development/python-modules/docker_compose/default.nix b/pkgs/applications/virtualization/docker-compose/default.nix
similarity index 100%
rename from pkgs/development/python-modules/docker_compose/default.nix
rename to pkgs/applications/virtualization/docker-compose/default.nix
diff --git a/pkgs/top-level/aliases.nix b/pkgs/top-level/aliases.nix
index 8767d98ad0a9..505758d3af0d 100644
--- a/pkgs/top-level/aliases.nix
+++ b/pkgs/top-level/aliases.nix
@@ -85,6 +85,7 @@ mapAliases ({
   docbook5_xsl = docbook_xsl_ns; # added 2018-04-25
   docbook_xml_xslt = docbook_xsl; # added 2018-04-25
   double_conversion = double-conversion; # 2017-11-22
+  docker_compose = docker-compose; # 2018-11-10
   dwarf_fortress = dwarf-fortress; # added 2016-01-23
   emacsMelpa = emacs25PackagesNg; # for backward compatibility
   emacsPackagesGen = emacsPackagesFor; # added 2018-08-18
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 018bba2aff81..d13bc7a35723 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -154,7 +154,7 @@ with pkgs;
 
   dockerTools = callPackage ../build-support/docker { };
 
-  docker_compose = pythonPackages.docker_compose;
+  docker-compose = python3Packages.callPackage ../applications/virtualization/docker-compose {};
 
   docker-ls = callPackage ../tools/misc/docker-ls { };
 
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index e4e561682bf0..668d79b37741 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -2222,8 +2222,6 @@ in {
 
   pyfribidi = callPackage ../development/python-modules/pyfribidi { };
 
-  docker_compose = callPackage ../development/python-modules/docker_compose {};
-
   pyftpdlib = callPackage ../development/python-modules/pyftpdlib { };
 
   fdroidserver = callPackage ../development/python-modules/fdroidserver { };

From ba35b5971cb1f75ea79b3011c17f57bbd10b344b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edward=20Tj=C3=B6rnhammar?= <ed@cflags.cc>
Date: Sun, 11 Nov 2018 12:35:43 +0100
Subject: [PATCH 1022/1129] i2pd: 2.21.1 -> 2.22.0

---
 pkgs/tools/networking/i2pd/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/networking/i2pd/default.nix b/pkgs/tools/networking/i2pd/default.nix
index 7ab77b2d2ee7..6e4cf45686b6 100644
--- a/pkgs/tools/networking/i2pd/default.nix
+++ b/pkgs/tools/networking/i2pd/default.nix
@@ -11,13 +11,13 @@ stdenv.mkDerivation rec {
 
   name = pname + "-" + version;
   pname = "i2pd";
-  version = "2.21.1";
+  version = "2.22.0";
 
   src = fetchFromGitHub {
     owner = "PurpleI2P";
     repo = pname;
     rev = version;
-    sha256 = "0j892s9ga9fjc2q1rw3hp5il4mw1jc0aiw60y1rfaiflyv0wd696";
+    sha256 = "1c4y5y6a9kssi9qmsyqz5hw29ya1s0i21fklnz48n08b7f4f9vlz";
   };
 
   buildInputs = with stdenv.lib; [ boost zlib openssl ]

From 3ba7d2ae018988212a780dc935ebfc482312dab8 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edward=20Tj=C3=B6rnhammar?= <ed@cflags.cc>
Date: Sun, 11 Nov 2018 12:36:26 +0100
Subject: [PATCH 1023/1129] zangband: 2.7.3 -> 2.7.4b

With minor fixups but marking as broken since the game doesn't progress
after character generation.
---
 pkgs/games/zangband/default.nix | 22 +++++++++-------------
 1 file changed, 9 insertions(+), 13 deletions(-)

diff --git a/pkgs/games/zangband/default.nix b/pkgs/games/zangband/default.nix
index cf5e41f389a9..6fab49825340 100644
--- a/pkgs/games/zangband/default.nix
+++ b/pkgs/games/zangband/default.nix
@@ -1,28 +1,23 @@
 { stdenv, fetchurl, ncurses, flex, bison, autoconf, automake, m4, coreutils }:
 
 stdenv.mkDerivation rec {
-  name = "zangband-${version}";
-  version = "2.7.3";
+  name = pname + "-" + version;
+  pname = "zangband";
+  version = "2.7.4b";
 
   src = fetchurl {
-    url = "ftp://ftp.sunet.se/pub/games/Angband/Variant/ZAngband/zangband-${version}.tar.gz";
-    sha256 = "0654m8fzklsc8565sqdad76mxjsm1z9c280srq8863sd10af0bdq";
+    url = "mirror://sourceforge/project/${pname}/${pname}-src/${version}/${name}.tar.gz";
+    sha256 = "0kkz6f9myhjnr3308sdab8q186rd55lapvcp38w8qmakdbhc828j";
   };
 
   buildInputs = [
     ncurses flex bison autoconf automake m4
   ];
 
-  # fails during chmod due to broken permissions
-  dontMakeSourcesWritable = true;
-  postUnpack = ''
-    chmod a+rwX -R .
-  '';
-
   preConfigure = ''
     sed -re 's/ch(own|grp|mod)/true/' -i lib/*/makefile.zb makefile.in
     sed -e '/FIXED_PATHS/d' -i src/z-config.h
-    ./bootstrap
+    autoconf
   '';
 
   preInstall = ''
@@ -42,8 +37,8 @@ stdenv.mkDerivation rec {
       cd "$ZANGBAND_PATH"
       for i in $(find "$ORIG_PATH" -type f); do
         REL_PATH="''${i#$ORIG_PATH/}"
-	mkdir -p "$(dirname "$REL_PATH")"
-	ln -s "$i" "$REL_PATH" &>/dev/null
+        mkdir -p "$(dirname "$REL_PATH")"
+        ln -s "$i" "$REL_PATH" &>/dev/null
       done
       mkdir -p lib/user lib/save
       for i in lib/*/*.raw; do
@@ -59,5 +54,6 @@ stdenv.mkDerivation rec {
   meta = {
     description = "Rogue-like game";
     license = stdenv.lib.licenses.unfree;
+    broken = true; # broken in runtime, will not get pass character generation
   };
 }

From 8ff9e78dc1fe30f613c035ae08ca59a89d236396 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edward=20Tj=C3=B6rnhammar?= <ed@cflags.cc>
Date: Sun, 11 Nov 2018 12:38:02 +0100
Subject: [PATCH 1024/1129] minetest: 0.4.16 -> 0.4.17

---
 pkgs/games/minetest/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/games/minetest/default.nix b/pkgs/games/minetest/default.nix
index fee8919bb236..28616fe845fc 100644
--- a/pkgs/games/minetest/default.nix
+++ b/pkgs/games/minetest/default.nix
@@ -4,19 +4,19 @@
 }:
 
 let
-  version = "0.4.16";
+  version = "0.4.17";
   sources = {
     src = fetchFromGitHub {
       owner = "minetest";
       repo = "minetest";
       rev = "${version}";
-      sha256 = "048m8as01bw4pnwfxx04wfnyljxq7ivk88l214zi18prrrkfamj3";
+      sha256 = "0ri9hyhvcnyyy2k83qvv543s10476g9fn3vcbjwvxjfqap9mkc5m";
     };
     data = fetchFromGitHub {
       owner = "minetest";
       repo = "minetest_game";
       rev = "${version}";
-      sha256 = "0alikzyjvj9hd8s3dd6ghpz0y982w2j0yd2zgd7a047mxw21hrcn";
+      sha256 = "1g8iw2pya32ifljbdx6z6rpcinmzm81i9minhi2bi1d500ailn7s";
     };
   };
 in stdenv.mkDerivation {

From d5986720203b9ef5b603c741cffe798120bfbc5b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edward=20Tj=C3=B6rnhammar?= <ed@cflags.cc>
Date: Sun, 11 Nov 2018 12:38:43 +0100
Subject: [PATCH 1025/1129] minecraft-server: 1.12.2 -> 1.13.2

---
 pkgs/games/minecraft-server/default.nix | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/pkgs/games/minecraft-server/default.nix b/pkgs/games/minecraft-server/default.nix
index 59e1144cf967..050e0126fa72 100644
--- a/pkgs/games/minecraft-server/default.nix
+++ b/pkgs/games/minecraft-server/default.nix
@@ -2,11 +2,13 @@
 
 stdenv.mkDerivation rec {
   name    = "minecraft-server-${version}";
-  version = "1.12.2";
+  version = "1.13.2";
 
   src  = fetchurl {
-    url    = "https://s3.amazonaws.com/Minecraft.Download/versions/${version}/minecraft_server.${version}.jar";
-    sha256 = "0zhnac6yvkdgdaag0gb0fgrkgizbwrpf7s76yqdiknfswrs947zy";
+    # Old url
+    # https://s3.amazonaws.com/Minecraft.Download/versions/${version}/minecraft_server.${version}.jar
+    url    = "https://launcher.mojang.com/v1/objects/3737db93722a9e39eeada7c27e7aca28b144ffa7/server.jar";
+    sha256 = "13h8dxrrgqa1g6sd7aaw26779hcsqsyjm7xm0sknifn54lnamlzz";
   };
 
   preferLocalBuild = true;

From 888d01da4811c5ebc1c6a841c6b475d5b6224098 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edward=20Tj=C3=B6rnhammar?= <ed@cflags.cc>
Date: Sun, 11 Nov 2018 12:41:27 +0100
Subject: [PATCH 1026/1129] nixos/minetest fix: add missing uid/gid for
 minetest

---
 nixos/modules/misc/ids.nix                       | 2 ++
 nixos/modules/services/games/minetest-server.nix | 3 +++
 2 files changed, 5 insertions(+)

diff --git a/nixos/modules/misc/ids.nix b/nixos/modules/misc/ids.nix
index 446a311807cc..aff562c00eb1 100644
--- a/nixos/modules/misc/ids.nix
+++ b/nixos/modules/misc/ids.nix
@@ -335,6 +335,7 @@
       kapacitor = 308;
       solr = 309;
       alerta = 310;
+      minetest = 311;
 
       # When adding a uid, make sure it doesn't match an existing gid. And don't use uids above 399!
 
@@ -630,6 +631,7 @@
       kapacitor = 308;
       solr = 309;
       alerta = 310;
+      minetest = 311;
 
       # When adding a gid, make sure it doesn't match an existing
       # uid. Users and groups with the same name should have equal
diff --git a/nixos/modules/services/games/minetest-server.nix b/nixos/modules/services/games/minetest-server.nix
index 2de42f20f6cc..98e69c6dc0ea 100644
--- a/nixos/modules/services/games/minetest-server.nix
+++ b/nixos/modules/services/games/minetest-server.nix
@@ -84,7 +84,9 @@ in
       home            = "/var/lib/minetest";
       createHome      = true;
       uid             = config.ids.uids.minetest;
+      group           = "minetest";
     };
+    users.groups.minetest.gid = config.ids.gids.minetest;
 
     systemd.services.minetest-server = {
       description   = "Minetest Server Service";
@@ -93,6 +95,7 @@ in
 
       serviceConfig.Restart = "always";
       serviceConfig.User    = "minetest";
+      serviceConfig.Group   = "minetest";
 
       script = ''
         cd /var/lib/minetest

From 4fc8527697a81aa387dbfb892e6f7a71944f4d47 Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Sun, 11 Nov 2018 14:01:25 +0100
Subject: [PATCH 1027/1129] dovecot, opensmtpd: comment out invalid meta.tests
 attribute

See https://github.com/NixOS/nixpkgs/issues/50230 for details.
---
 pkgs/servers/mail/dovecot/default.nix   | 9 ++++++---
 pkgs/servers/mail/opensmtpd/default.nix | 9 ++++++---
 2 files changed, 12 insertions(+), 6 deletions(-)

diff --git a/pkgs/servers/mail/dovecot/default.nix b/pkgs/servers/mail/dovecot/default.nix
index 8f60929e2f7c..af1184a973b8 100644
--- a/pkgs/servers/mail/dovecot/default.nix
+++ b/pkgs/servers/mail/dovecot/default.nix
@@ -68,8 +68,11 @@ stdenv.mkDerivation rec {
     description = "Open source IMAP and POP3 email server written with security primarily in mind";
     maintainers = with stdenv.lib.maintainers; [ peti rickynils fpletz ];
     platforms = stdenv.lib.platforms.unix;
-    tests = {
-      opensmtpd-interaction = nixosTests.opensmtpd;
-    };
+    # https://github.com/NixOS/nixpkgs/issues/50230 must be resolved before
+    # this can be enabled.
+    #
+    # tests = {
+    #   opensmtpd-interaction = nixosTests.opensmtpd;
+    # };
   };
 }
diff --git a/pkgs/servers/mail/opensmtpd/default.nix b/pkgs/servers/mail/opensmtpd/default.nix
index 0ee1c92acbdc..5efaca40f6ee 100644
--- a/pkgs/servers/mail/opensmtpd/default.nix
+++ b/pkgs/servers/mail/opensmtpd/default.nix
@@ -61,8 +61,11 @@ stdenv.mkDerivation rec {
     license = licenses.isc;
     platforms = platforms.linux;
     maintainers = with maintainers; [ rickynils obadz ekleog ];
-    tests = {
-      basic-functionality-and-dovecot-interaction = nixosTests.opensmtpd;
-    };
+    # https://github.com/NixOS/nixpkgs/issues/50230 must be resolved before
+    # this can be enabled.
+    #
+    # tests = {
+    #   basic-functionality-and-dovecot-interaction = nixosTests.opensmtpd;
+    # };
   };
 }

From 6c68fbd4e1f8beac39cb1f499ff90c78256262d6 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?L=C3=A9o=20Gaspard?= <leo@gaspard.io>
Date: Sun, 11 Nov 2018 17:41:11 +0900
Subject: [PATCH 1028/1129] tests: refactor to carry the package set as an
 argument

This way, the package set will be possible to pass without re-importing
all the time
---
 nixos/lib/build-vms.nix                               |  4 +---
 nixos/lib/testing.nix                                 |  4 ++--
 .../installer/tools/nixos-build-vms/build-vms.nix     |  6 +++++-
 nixos/tests/boot.nix                                  |  7 +++++--
 nixos/tests/buildbot.nix                              |  7 +++++--
 nixos/tests/certmgr.nix                               |  7 +++++--
 nixos/tests/chromium.nix                              |  5 +++--
 nixos/tests/cloud-init.nix                            |  7 +++++--
 nixos/tests/ec2.nix                                   |  7 +++++--
 nixos/tests/elk.nix                                   | 10 ++++++++--
 nixos/tests/gitea.nix                                 |  7 +++++--
 nixos/tests/installer.nix                             |  7 +++++--
 nixos/tests/kafka.nix                                 |  8 ++++++--
 nixos/tests/keymap.nix                                |  7 +++++--
 nixos/tests/kubernetes/base.nix                       |  7 +++++--
 nixos/tests/make-test.nix                             |  8 ++++++--
 nixos/tests/networking.nix                            |  4 +++-
 nixos/tests/nextcloud/default.nix                     | 11 +++++++----
 nixos/tests/postgresql.nix                            |  9 +++++++--
 nixos/tests/predictable-interface-names.nix           |  7 +++++--
 nixos/tests/rspamd.nix                                |  9 +++++++--
 nixos/tests/rsyslogd.nix                              |  8 ++++++--
 nixos/tests/run-in-machine.nix                        |  7 +++++--
 nixos/tests/sddm.nix                                  |  7 +++++--
 nixos/tests/virtualbox.nix                            |  9 +++++++--
 nixos/tests/zfs.nix                                   |  7 +++++--
 26 files changed, 133 insertions(+), 53 deletions(-)

diff --git a/nixos/lib/build-vms.nix b/nixos/lib/build-vms.nix
index 4f65501f89c6..933f81392491 100644
--- a/nixos/lib/build-vms.nix
+++ b/nixos/lib/build-vms.nix
@@ -1,6 +1,4 @@
-{ system, minimal ? false, config ? {} }:
-
-let pkgs = import ../.. { inherit system config; }; in
+{ system, pkgs, minimal ? false, config ? {} }:
 
 with pkgs.lib;
 with import ../lib/qemu-flags.nix { inherit pkgs; };
diff --git a/nixos/lib/testing.nix b/nixos/lib/testing.nix
index 8cdf4150057e..d26d4a91924b 100644
--- a/nixos/lib/testing.nix
+++ b/nixos/lib/testing.nix
@@ -1,6 +1,6 @@
-{ system, minimal ? false, config ? {} }:
+{ system, pkgs, minimal ? false, config ? {} }:
 
-with import ./build-vms.nix { inherit system minimal config; };
+with import ./build-vms.nix { inherit system pkgs minimal config; };
 with pkgs;
 
 let
diff --git a/nixos/modules/installer/tools/nixos-build-vms/build-vms.nix b/nixos/modules/installer/tools/nixos-build-vms/build-vms.nix
index 4372d196261e..4d6da849f237 100644
--- a/nixos/modules/installer/tools/nixos-build-vms/build-vms.nix
+++ b/nixos/modules/installer/tools/nixos-build-vms/build-vms.nix
@@ -1,9 +1,13 @@
 { system ? builtins.currentSystem
+, config ? {}
 , networkExpr
 }:
 
 let nodes = import networkExpr; in
 
-with import ../../../../lib/testing.nix { inherit system; };
+with import ../../../../lib/testing.nix {
+  inherit system;
+  pkgs = import ../.. { inherit system config; }
+};
 
 (makeTest { inherit nodes; testScript = ""; }).driver
diff --git a/nixos/tests/boot.nix b/nixos/tests/boot.nix
index 301d9d0f817f..c9bb1e77c6d0 100644
--- a/nixos/tests/boot.nix
+++ b/nixos/tests/boot.nix
@@ -1,6 +1,9 @@
-{ system ? builtins.currentSystem }:
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; }
+}:
 
-with import ../lib/testing.nix { inherit system; };
+with import ../lib/testing.nix { inherit system pkgs; };
 with pkgs.lib;
 
 let
diff --git a/nixos/tests/buildbot.nix b/nixos/tests/buildbot.nix
index 399fd39005e2..210ad8e91df7 100644
--- a/nixos/tests/buildbot.nix
+++ b/nixos/tests/buildbot.nix
@@ -1,6 +1,9 @@
-{ system ? builtins.currentSystem }:
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; }
+}:
 
-with import ../lib/testing.nix { inherit system; };
+with import ../lib/testing.nix { inherit system pkgs; };
 
 let
   # Test ensures buildbot master comes up correctly and workers can connect
diff --git a/nixos/tests/certmgr.nix b/nixos/tests/certmgr.nix
index 8354c46b85f7..fe67833808ce 100644
--- a/nixos/tests/certmgr.nix
+++ b/nixos/tests/certmgr.nix
@@ -1,6 +1,9 @@
-{ system ? builtins.currentSystem }:
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; }
+}:
 
-with import ../lib/testing.nix { inherit system; };
+with import ../lib/testing.nix { inherit system pkgs; };
 let
   mkSpec = { host, service ? null, action }: {
     inherit action;
diff --git a/nixos/tests/chromium.nix b/nixos/tests/chromium.nix
index e5097609fb27..af5db2a3dbe1 100644
--- a/nixos/tests/chromium.nix
+++ b/nixos/tests/chromium.nix
@@ -1,5 +1,6 @@
 { system ? builtins.currentSystem
-, pkgs ? import ../.. { inherit system; }
+, config ? {}
+, pkgs ? import ../.. { inherit system config; }
 , channelMap ? {
     stable = pkgs.chromium;
     beta   = pkgs.chromiumBeta;
@@ -7,7 +8,7 @@
   }
 }:
 
-with import ../lib/testing.nix { inherit system; };
+with import ../lib/testing.nix { inherit system pkgs; };
 with pkgs.lib;
 
 mapAttrs (channel: chromiumPkg: makeTest rec {
diff --git a/nixos/tests/cloud-init.nix b/nixos/tests/cloud-init.nix
index 303e74086460..516d29c9036b 100644
--- a/nixos/tests/cloud-init.nix
+++ b/nixos/tests/cloud-init.nix
@@ -1,6 +1,9 @@
-{ system ? builtins.currentSystem }:
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; }
+}:
 
-with import ../lib/testing.nix { inherit system; };
+with import ../lib/testing.nix { inherit system pkgs; };
 with pkgs.lib;
 
 let
diff --git a/nixos/tests/ec2.nix b/nixos/tests/ec2.nix
index 8271747ccc63..ed6bf7da988c 100644
--- a/nixos/tests/ec2.nix
+++ b/nixos/tests/ec2.nix
@@ -1,6 +1,9 @@
-{ system ? builtins.currentSystem }:
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; }
+}:
 
-with import ../lib/testing.nix { inherit system; };
+with import ../lib/testing.nix { inherit system pkgs; };
 with pkgs.lib;
 
 let
diff --git a/nixos/tests/elk.nix b/nixos/tests/elk.nix
index 15be72b80bba..d787ac973005 100644
--- a/nixos/tests/elk.nix
+++ b/nixos/tests/elk.nix
@@ -1,6 +1,12 @@
-{ system ? builtins.currentSystem, enableUnfree ? false }:
-with import ../lib/testing.nix { inherit system; };
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; },
+  enableUnfree ? false
+}:
+
+with import ../lib/testing.nix { inherit system pkgs; };
 with pkgs.lib;
+
 let
   esUrl = "http://localhost:9200";
 
diff --git a/nixos/tests/gitea.nix b/nixos/tests/gitea.nix
index 7ffe05ef3f1f..354334991852 100644
--- a/nixos/tests/gitea.nix
+++ b/nixos/tests/gitea.nix
@@ -1,6 +1,9 @@
-{ system ? builtins.currentSystem }:
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; }
+}:
 
-with import ../lib/testing.nix { inherit system; };
+with import ../lib/testing.nix { inherit system pkgs; };
 with pkgs.lib;
 
 {
diff --git a/nixos/tests/installer.nix b/nixos/tests/installer.nix
index 3f9fa0e6016c..e03fc459cb87 100644
--- a/nixos/tests/installer.nix
+++ b/nixos/tests/installer.nix
@@ -1,6 +1,9 @@
-{ system ? builtins.currentSystem }:
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; }
+}:
 
-with import ../lib/testing.nix { inherit system; };
+with import ../lib/testing.nix { inherit system pkgs; };
 with pkgs.lib;
 
 let
diff --git a/nixos/tests/kafka.nix b/nixos/tests/kafka.nix
index c9fd74620efb..a833e01f9f5e 100644
--- a/nixos/tests/kafka.nix
+++ b/nixos/tests/kafka.nix
@@ -1,5 +1,9 @@
-{ system ? builtins.currentSystem }:
-with import ../lib/testing.nix { inherit system; };
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; }
+}:
+
+with import ../lib/testing.nix { inherit system pkgs; };
 with pkgs.lib;
 
 let
diff --git a/nixos/tests/keymap.nix b/nixos/tests/keymap.nix
index be880388314c..b19da251119b 100644
--- a/nixos/tests/keymap.nix
+++ b/nixos/tests/keymap.nix
@@ -1,6 +1,9 @@
-{ system ? builtins.currentSystem }:
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; }
+}:
 
-with import ../lib/testing.nix { inherit system; };
+with import ../lib/testing.nix { inherit system pkgs; };
 
 let
   readyFile  = "/tmp/readerReady";
diff --git a/nixos/tests/kubernetes/base.nix b/nixos/tests/kubernetes/base.nix
index e4bc5b326d34..b77da3414b34 100644
--- a/nixos/tests/kubernetes/base.nix
+++ b/nixos/tests/kubernetes/base.nix
@@ -1,6 +1,9 @@
-{ system ? builtins.currentSystem }:
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; }
+}:
 
-with import ../../lib/testing.nix { inherit system; };
+with import ../../lib/testing.nix { inherit system pkgs; };
 with pkgs.lib;
 
 let
diff --git a/nixos/tests/make-test.nix b/nixos/tests/make-test.nix
index ee4ba310ad50..cee5da93454a 100644
--- a/nixos/tests/make-test.nix
+++ b/nixos/tests/make-test.nix
@@ -1,5 +1,9 @@
-f: { system ? builtins.currentSystem, ... } @ args:
+f: {
+  system ? builtins.currentSystem,
+  pkgs ? import ../.. { inherit system; config = {}; },
+  ...
+} @ args:
 
-with import ../lib/testing.nix { inherit system; };
+with import ../lib/testing.nix { inherit system pkgs; };
 
 makeTest (if pkgs.lib.isFunction f then f (args // { inherit pkgs; inherit (pkgs) lib; }) else f)
diff --git a/nixos/tests/networking.nix b/nixos/tests/networking.nix
index d1d4fd41dda6..6843e8b26368 100644
--- a/nixos/tests/networking.nix
+++ b/nixos/tests/networking.nix
@@ -1,8 +1,10 @@
 { system ? builtins.currentSystem
+, config ? {}
+, pkgs ? import ../.. { inherit system config; },
 # bool: whether to use networkd in the tests
 , networkd }:
 
-with import ../lib/testing.nix { inherit system; };
+with import ../lib/testing.nix { inherit system pkgs; };
 with pkgs.lib;
 
 let
diff --git a/nixos/tests/nextcloud/default.nix b/nixos/tests/nextcloud/default.nix
index 66da6794b961..e4c7a70606cf 100644
--- a/nixos/tests/nextcloud/default.nix
+++ b/nixos/tests/nextcloud/default.nix
@@ -1,6 +1,9 @@
-{ system ? builtins.currentSystem }:
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../../.. { inherit system config; }
+}:
 {
-  basic = import ./basic.nix { inherit system; };
-  with-postgresql-and-redis = import ./with-postgresql-and-redis.nix { inherit system; };
-  with-mysql-and-memcached = import ./with-mysql-and-memcached.nix { inherit system; };
+  basic = import ./basic.nix { inherit system pkgs; };
+  with-postgresql-and-redis = import ./with-postgresql-and-redis.nix { inherit system pkgs; };
+  with-mysql-and-memcached = import ./with-mysql-and-memcached.nix { inherit system pkgs; };
 }
diff --git a/nixos/tests/postgresql.nix b/nixos/tests/postgresql.nix
index f1f09277f342..ed54a31c8e52 100644
--- a/nixos/tests/postgresql.nix
+++ b/nixos/tests/postgresql.nix
@@ -1,6 +1,11 @@
-{ system ? builtins.currentSystem }:
-with import ../lib/testing.nix { inherit system; };
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; }
+}:
+
+with import ../lib/testing.nix { inherit system pkgs; };
 with pkgs.lib;
+
 let
   postgresql-versions = pkgs.callPackages ../../pkgs/servers/sql/postgresql { };
   test-sql = pkgs.writeText "postgresql-test" ''
diff --git a/nixos/tests/predictable-interface-names.nix b/nixos/tests/predictable-interface-names.nix
index 0d73436c1c3f..8306abb8c42f 100644
--- a/nixos/tests/predictable-interface-names.nix
+++ b/nixos/tests/predictable-interface-names.nix
@@ -1,7 +1,10 @@
-{ system ? builtins.currentSystem }:
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; }
+}:
 
 let
-  inherit (import ../lib/testing.nix { inherit system; }) makeTest pkgs;
+  inherit (import ../lib/testing.nix { inherit system pkgs; }) makeTest;
 in pkgs.lib.listToAttrs (pkgs.lib.crossLists (predictable: withNetworkd: {
   name = pkgs.lib.optionalString (!predictable) "un" + "predictable"
        + pkgs.lib.optionalString withNetworkd "Networkd";
diff --git a/nixos/tests/rspamd.nix b/nixos/tests/rspamd.nix
index c2175f1bc257..e16a9e6ffbc6 100644
--- a/nixos/tests/rspamd.nix
+++ b/nixos/tests/rspamd.nix
@@ -1,6 +1,11 @@
-{ system ? builtins.currentSystem }:
-with import ../lib/testing.nix { inherit system; };
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; }
+}:
+
+with import ../lib/testing.nix { inherit system pkgs; };
 with pkgs.lib;
+
 let
   initMachine = ''
     startAll
diff --git a/nixos/tests/rsyslogd.nix b/nixos/tests/rsyslogd.nix
index 969d59e0f2c2..f17e61814c5e 100644
--- a/nixos/tests/rsyslogd.nix
+++ b/nixos/tests/rsyslogd.nix
@@ -1,7 +1,11 @@
-{ system ? builtins.currentSystem }:
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; }
+}:
 
-with import ../lib/testing.nix { inherit system; };
+with import ../lib/testing.nix { inherit system pkgs; };
 with pkgs.lib;
+
 {
   test1 = makeTest {
     name = "rsyslogd-test1";
diff --git a/nixos/tests/run-in-machine.nix b/nixos/tests/run-in-machine.nix
index bd90dc3080bd..116f5dc28a62 100644
--- a/nixos/tests/run-in-machine.nix
+++ b/nixos/tests/run-in-machine.nix
@@ -1,6 +1,9 @@
-{ system ? builtins.currentSystem }:
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; }
+}:
 
-with import ../lib/testing.nix { inherit system; };
+with import ../lib/testing.nix { inherit system pkgs; };
 
 let
   output = runInMachine {
diff --git a/nixos/tests/sddm.nix b/nixos/tests/sddm.nix
index 7b9fdc0b3441..678bcbeab20a 100644
--- a/nixos/tests/sddm.nix
+++ b/nixos/tests/sddm.nix
@@ -1,6 +1,9 @@
-{ system ? builtins.currentSystem }:
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; }
+}:
 
-with import ../lib/testing.nix { inherit system; };
+with import ../lib/testing.nix { inherit system pkgs; };
 
 let
   inherit (pkgs) lib;
diff --git a/nixos/tests/virtualbox.nix b/nixos/tests/virtualbox.nix
index ce84576edca1..385e2939fe3b 100644
--- a/nixos/tests/virtualbox.nix
+++ b/nixos/tests/virtualbox.nix
@@ -1,6 +1,11 @@
-{ system ? builtins.currentSystem, debug ? false, enableUnfree ? false }:
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; },
+  debug ? false,
+  enableUnfree ? false
+}:
 
-with import ../lib/testing.nix { inherit system; };
+with import ../lib/testing.nix { inherit system pkgs; };
 with pkgs.lib;
 
 let
diff --git a/nixos/tests/zfs.nix b/nixos/tests/zfs.nix
index 1434038e90c1..d7a08268e984 100644
--- a/nixos/tests/zfs.nix
+++ b/nixos/tests/zfs.nix
@@ -1,6 +1,9 @@
-{ system ? builtins.currentSystem }:
+{ system ? builtins.currentSystem,
+  config ? {},
+  pkgs ? import ../.. { inherit system config; }
+}:
 
-with import ../lib/testing.nix { inherit system; };
+with import ../lib/testing.nix { inherit system pkgs; };
 
 let
 

From 83b27f60ceff23967e477c90bef8e78cc96d50a2 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?L=C3=A9o=20Gaspard?= <leo@gaspard.io>
Date: Sun, 11 Nov 2018 20:30:07 +0900
Subject: [PATCH 1029/1129] tests: split into a separate `all-tests.nix` file
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

This will make the list much easier to re-use, eg. for `nixosTests`

The drawback is that this approaches makes the
```
nix-build release.nix -A tests.opensmtpd.x86_64-linux
```
command about twice as slow (3s to 6s): it now has to evaluate `nixpkgs`
once for each architecture, instead of just having the hardcoded list of
tests that allowed to say “ok just evaluate for x86_64-linux”.

On the other hand, complete evaluation of `release.nix` should be much
faster because we no longer import `nixpkgs` for each test: testing with
the following command went from 30s to 18s, and that's just for a few
tests.
```
time nix-instantiate --eval --strict nixos/release.nix -A tests.nat
```
I initially wanted to test on the whole `release.nix`, but there are too
many broken tests and it takes too long to eval them all, especially
compared to the fact that the current implementation breaks some setup.

Given developers can just `nix-build nixos/tests/my-test.nix`, it sounds
like an overall win.
---
 nixos/release.nix                  | 230 ++---------------------------
 nixos/tests/all-tests.nix          | 214 +++++++++++++++++++++++++++
 pkgs/stdenv/generic/check-meta.nix |   6 +-
 3 files changed, 232 insertions(+), 218 deletions(-)
 create mode 100644 nixos/tests/all-tests.nix

diff --git a/nixos/release.nix b/nixos/release.nix
index c2372da23f57..e6abd003e881 100644
--- a/nixos/release.nix
+++ b/nixos/release.nix
@@ -14,28 +14,19 @@ let
   versionSuffix =
     (if stableBranch then "." else "pre") + "${toString nixpkgs.revCount}.${nixpkgs.shortRev}";
 
-  importTest = fn: args: system: import fn ({
-    inherit system;
-  } // args);
-
-  # Note: only supportedSystems are considered.
-  callTestOnMatchingSystems = systems: fn: args:
-    forMatchingSystems
-      (intersectLists supportedSystems systems)
-      (system: hydraJob (importTest fn args system));
-  callTest = callTestOnMatchingSystems supportedSystems;
-
-  callSubTests = callSubTestsOnMatchingSystems supportedSystems;
-  callSubTestsOnMatchingSystems = systems: fn: args: let
-    discover = attrs: let
-      subTests = filterAttrs (const (hasAttr "test")) attrs;
-    in mapAttrs (const (t: hydraJob t.test)) subTests;
-
-    discoverForSystem = system: mapAttrs (_: test: {
-      ${system} = test;
-    }) (discover (importTest fn args system));
-
-  in foldAttrs mergeAttrs {} (map discoverForSystem (intersectLists systems supportedSystems));
+  # Run the tests for each platform.  You can run a test by doing
+  # e.g. ‘nix-build -A tests.login.x86_64-linux’, or equivalently,
+  # ‘nix-build tests/login.nix -A result’.
+  allTestsForSystem = system:
+    import ./tests/all-tests.nix {
+      inherit system;
+      pkgs = import nixpkgs { inherit system; };
+      callTest = t: {
+        ${system} = hydraJob t.test;
+      };
+    };
+  allTests =
+    foldAttrs recursiveUpdate {} (map allTestsForSystem supportedSystems);
 
   pkgs = import nixpkgs { system = "x86_64-linux"; };
 
@@ -245,200 +236,7 @@ in rec {
     };
   */
 
-
-  # Run the tests for each platform.  You can run a test by doing
-  # e.g. ‘nix-build -A tests.login.x86_64-linux’, or equivalently,
-  # ‘nix-build tests/login.nix -A result’.
-  tests.atd = callTest tests/atd.nix {};
-  tests.acme = callTest tests/acme.nix {};
-  tests.avahi = callTest tests/avahi.nix {};
-  tests.beegfs = callTest tests/beegfs.nix {};
-  tests.upnp = callTest tests/upnp.nix {};
-  tests.bittorrent = callTest tests/bittorrent.nix {};
-  tests.bind = callTest tests/bind.nix {};
-  #tests.blivet = callTest tests/blivet.nix {};   # broken since 2017-07024
-  tests.boot = callSubTests tests/boot.nix {};
-  tests.boot-stage1 = callTest tests/boot-stage1.nix {};
-  tests.borgbackup = callTest tests/borgbackup.nix {};
-  tests.buildbot = callSubTests tests/buildbot.nix {};
-  tests.cadvisor = callTestOnMatchingSystems ["x86_64-linux"] tests/cadvisor.nix {};
-  tests.ceph = callTestOnMatchingSystems ["x86_64-linux"] tests/ceph.nix {};
-  tests.certmgr = callSubTests tests/certmgr.nix {};
-  tests.cfssl = callTestOnMatchingSystems ["x86_64-linux"] tests/cfssl.nix {};
-  tests.chromium = (callSubTestsOnMatchingSystems ["x86_64-linux"] tests/chromium.nix {}).stable or {};
-  tests.cjdns = callTest tests/cjdns.nix {};
-  tests.cloud-init = callTest tests/cloud-init.nix {};
-  tests.codimd = callTest tests/codimd.nix {};
-  tests.containers-ipv4 = callTest tests/containers-ipv4.nix {};
-  tests.containers-ipv6 = callTest tests/containers-ipv6.nix {};
-  tests.containers-bridge = callTest tests/containers-bridge.nix {};
-  tests.containers-imperative = callTest tests/containers-imperative.nix {};
-  tests.containers-extra_veth = callTest tests/containers-extra_veth.nix {};
-  tests.containers-physical_interfaces = callTest tests/containers-physical_interfaces.nix {};
-  tests.containers-restart_networking = callTest tests/containers-restart_networking.nix {};
-  tests.containers-tmpfs = callTest tests/containers-tmpfs.nix {};
-  tests.containers-hosts = callTest tests/containers-hosts.nix {};
-  tests.containers-macvlans = callTest tests/containers-macvlans.nix {};
-  tests.couchdb = callTest tests/couchdb.nix {};
-  tests.deluge = callTest tests/deluge.nix {};
-  tests.dhparams = callTest tests/dhparams.nix {};
-  tests.docker = callTestOnMatchingSystems ["x86_64-linux"] tests/docker.nix {};
-  tests.docker-tools = callTestOnMatchingSystems ["x86_64-linux"] tests/docker-tools.nix {};
-  tests.docker-tools-overlay = callTestOnMatchingSystems ["x86_64-linux"] tests/docker-tools-overlay.nix {};
-  tests.docker-edge = callTestOnMatchingSystems ["x86_64-linux"] tests/docker-edge.nix {};
-  tests.docker-preloader = callTestOnMatchingSystems ["x86_64-linux"] tests/docker-preloader.nix {};
-  tests.docker-registry = callTest tests/docker-registry.nix {};
-  tests.dovecot = callTest tests/dovecot.nix {};
-  tests.dnscrypt-proxy = callTestOnMatchingSystems ["x86_64-linux"] tests/dnscrypt-proxy.nix {};
-  tests.ecryptfs = callTest tests/ecryptfs.nix {};
-  tests.etcd = callTestOnMatchingSystems ["x86_64-linux"] tests/etcd.nix {};
-  tests.ec2-nixops = (callSubTestsOnMatchingSystems ["x86_64-linux"] tests/ec2.nix {}).boot-ec2-nixops or {};
-  # ec2-config doesn't work in a sandbox as the simulated ec2 instance needs network access
-  #tests.ec2-config = (callSubTestsOnMatchingSystems ["x86_64-linux"] tests/ec2.nix {}).boot-ec2-config or {};
-  tests.elk = callSubTestsOnMatchingSystems ["x86_64-linux"] tests/elk.nix {};
-  tests.env = callTest tests/env.nix {};
-  tests.ferm = callTest tests/ferm.nix {};
-  tests.firefox = callTest tests/firefox.nix {};
-  tests.flatpak = callTest tests/flatpak.nix {};
-  tests.firewall = callTest tests/firewall.nix {};
-  tests.fsck = callTest tests/fsck.nix {};
-  tests.fwupd = callTest tests/fwupd.nix {};
-  tests.gdk-pixbuf = callTest tests/gdk-pixbuf.nix {};
-  tests.gitea = callSubTests tests/gitea.nix {};
-  tests.gitlab = callTest tests/gitlab.nix {};
-  tests.gitolite = callTest tests/gitolite.nix {};
-  tests.gjs = callTest tests/gjs.nix {};
-  tests.gocd-agent = callTest tests/gocd-agent.nix {};
-  tests.gocd-server = callTest tests/gocd-server.nix {};
-  tests.gnome3 = callTest tests/gnome3.nix {};
-  tests.gnome3-gdm = callTest tests/gnome3-gdm.nix {};
-  tests.grafana = callTest tests/grafana.nix {};
-  tests.graphite = callTest tests/graphite.nix {};
-  tests.hadoop.hdfs = callTestOnMatchingSystems [ "x86_64-linux" ] tests/hadoop/hdfs.nix {};
-  tests.hadoop.yarn = callTestOnMatchingSystems [ "x86_64-linux" ] tests/hadoop/yarn.nix {};
-  tests.hardened = callTest tests/hardened.nix { };
-  tests.haproxy = callTest tests/haproxy.nix {};
-  tests.hibernate = callTest tests/hibernate.nix {};
-  tests.hitch = callTest tests/hitch {};
-  tests.home-assistant = callTest tests/home-assistant.nix { };
-  tests.hound = callTest tests/hound.nix {};
-  tests.hocker-fetchdocker = callTest tests/hocker-fetchdocker {};
-  tests.hydra = callTest tests/hydra {};
-  tests.i3wm = callTest tests/i3wm.nix {};
-  tests.iftop = callTest tests/iftop.nix {};
-  tests.initrd-network-ssh = callTest tests/initrd-network-ssh {};
-  tests.installer = callSubTests tests/installer.nix {};
-  tests.influxdb = callTest tests/influxdb.nix {};
-  tests.ipv6 = callTest tests/ipv6.nix {};
-  tests.jenkins = callTest tests/jenkins.nix {};
-  tests.ostree = callTest tests/ostree.nix {};
-  tests.osquery = callTest tests/osquery.nix {};
-  tests.plasma5 = callTest tests/plasma5.nix {};
-  tests.plotinus = callTest tests/plotinus.nix {};
-  tests.keymap = callSubTests tests/keymap.nix {};
-  tests.incron = callTest tests/incron.nix {};
-  tests.initrdNetwork = callTest tests/initrd-network.nix {};
-  tests.kafka = callSubTests tests/kafka.nix {};
-  tests.kernel-latest = callTest tests/kernel-latest.nix {};
-  tests.kernel-lts = callTest tests/kernel-lts.nix {};
-  tests.kubernetes.dns = callSubTestsOnMatchingSystems ["x86_64-linux"] tests/kubernetes/dns.nix {};
-  ## kubernetes.e2e should eventually replace kubernetes.rbac when it works
-  #tests.kubernetes.e2e = callSubTestsOnMatchingSystems ["x86_64-linux"] tests/kubernetes/e2e.nix {};
-  tests.kubernetes.rbac = callSubTestsOnMatchingSystems ["x86_64-linux"] tests/kubernetes/rbac.nix {};
-  tests.latestKernel.login = callTest tests/login.nix { latestKernel = true; };
-  tests.ldap = callTest tests/ldap.nix {};
-  #tests.lightdm = callTest tests/lightdm.nix {};
-  tests.login = callTest tests/login.nix {};
-  #tests.logstash = callTest tests/logstash.nix {};
-  tests.mathics = callTest tests/mathics.nix {};
-  tests.matrix-synapse = callTest tests/matrix-synapse.nix {};
-  tests.memcached = callTest tests/memcached.nix {};
-  tests.mesos = callTest tests/mesos.nix {};
-  tests.misc = callTest tests/misc.nix {};
-  tests.mongodb = callTest tests/mongodb.nix {};
-  tests.mpd = callTest tests/mpd.nix {};
-  tests.mumble = callTest tests/mumble.nix {};
-  tests.munin = callTest tests/munin.nix {};
-  tests.mutableUsers = callTest tests/mutable-users.nix {};
-  tests.mysql = callTest tests/mysql.nix {};
-  tests.mysqlBackup = callTest tests/mysql-backup.nix {};
-  tests.mysqlReplication = callTest tests/mysql-replication.nix {};
-  tests.nat.firewall = callTest tests/nat.nix { withFirewall = true; };
-  tests.nat.firewall-conntrack = callTest tests/nat.nix { withFirewall = true; withConntrackHelpers = true; };
-  tests.nat.standalone = callTest tests/nat.nix { withFirewall = false; };
-  tests.netdata = callTest tests/netdata.nix { };
-  tests.networking.networkd = callSubTests tests/networking.nix { networkd = true; };
-  tests.networking.scripted = callSubTests tests/networking.nix { networkd = false; };
-  tests.nextcloud = callSubTests tests/nextcloud { };
-  # TODO: put in networking.nix after the test becomes more complete
-  tests.networkingProxy = callTest tests/networking-proxy.nix {};
-  tests.nexus = callTest tests/nexus.nix { };
-  tests.nfs3 = callTest tests/nfs.nix { version = 3; };
-  tests.nfs4 = callTest tests/nfs.nix { version = 4; };
-  tests.nginx = callTest tests/nginx.nix { };
-  tests.nghttpx = callTest tests/nghttpx.nix { };
-  tests.nix-ssh-serve = callTest tests/nix-ssh-serve.nix { };
-  tests.novacomd = callTestOnMatchingSystems ["x86_64-linux"] tests/novacomd.nix { };
-  tests.leaps = callTest tests/leaps.nix { };
-  tests.nsd = callTest tests/nsd.nix {};
-  tests.openssh = callTest tests/openssh.nix {};
-  tests.openldap = callTest tests/openldap.nix {};
-  tests.opensmtpd = callTest tests/opensmtpd.nix {};
-  tests.owncloud = callTest tests/owncloud.nix {};
-  tests.pam-oath-login = callTest tests/pam-oath-login.nix {};
-  tests.peerflix = callTest tests/peerflix.nix {};
-  tests.php-pcre = callTest tests/php-pcre.nix {};
-  tests.postgresql = callSubTests tests/postgresql.nix {};
-  tests.pgmanage = callTest tests/pgmanage.nix {};
-  tests.postgis = callTest tests/postgis.nix {};
-  tests.powerdns = callTest tests/powerdns.nix {};
-  tests.pgjwt = callTest tests/pgjwt.nix {};
-  tests.predictable-interface-names = callSubTests tests/predictable-interface-names.nix {};
-  tests.printing = callTest tests/printing.nix {};
-  tests.prometheus = callTest tests/prometheus.nix {};
-  tests.prometheus-exporters = callTest tests/prometheus-exporters.nix {};
-  tests.prosody = callTest tests/prosody.nix {};
-  tests.proxy = callTest tests/proxy.nix {};
-  tests.quagga = callTest tests/quagga.nix {};
-  tests.quake3 = callTest tests/quake3.nix {};
-  tests.rabbitmq = callTest tests/rabbitmq.nix {};
-  tests.radicale = callTest tests/radicale.nix {};
-  tests.redmine = callTest tests/redmine.nix {};
-  tests.rspamd = callSubTests tests/rspamd.nix {};
-  tests.rsyslogd = callSubTests tests/rsyslogd.nix {};
-  tests.runInMachine = callTest tests/run-in-machine.nix {};
-  tests.rxe = callTest tests/rxe.nix {};
-  tests.samba = callTest tests/samba.nix {};
-  tests.sddm = callSubTests tests/sddm.nix {};
-  tests.simple = callTest tests/simple.nix {};
-  tests.slim = callTest tests/slim.nix {};
-  tests.slurm = callTest tests/slurm.nix {};
-  tests.smokeping = callTest tests/smokeping.nix {};
-  tests.snapper = callTest tests/snapper.nix {};
-  tests.solr = callTest tests/solr.nix {};
-  #tests.statsd = callTest tests/statsd.nix {}; # statsd is broken: #45946
-  tests.strongswan-swanctl = callTest tests/strongswan-swanctl.nix {};
-  tests.sudo = callTest tests/sudo.nix {};
-  tests.systemd = callTest tests/systemd.nix {};
-  tests.switchTest = callTest tests/switch-test.nix {};
-  tests.taskserver = callTest tests/taskserver.nix {};
-  tests.tomcat = callTest tests/tomcat.nix {};
-  tests.tor = callTest tests/tor.nix {};
-  tests.transmission = callTest tests/transmission.nix {};
-  tests.udisks2 = callTest tests/udisks2.nix {};
-  tests.vault = callTest tests/vault.nix {};
-  tests.virtualbox = callSubTestsOnMatchingSystems ["x86_64-linux"] tests/virtualbox.nix {};
-  tests.wordpress = callTest tests/wordpress.nix {};
-  tests.xautolock = callTest tests/xautolock.nix {};
-  tests.xdg-desktop-portal = callTest tests/xdg-desktop-portal.nix {};
-  tests.xfce = callTest tests/xfce.nix {};
-  tests.xmonad = callTest tests/xmonad.nix {};
-  tests.xrdp = callTest tests/xrdp.nix {};
-  tests.xss-lock = callTest tests/xss-lock.nix {};
-  tests.yabar = callTest tests/yabar.nix {};
-  tests.zookeeper = callTest tests/zookeeper.nix {};
-  tests.morty = callTest tests/morty.nix { };
-  tests.bcachefs = callTest tests/bcachefs.nix { };
+  tests = allTests;
 
   /* Build a bunch of typical closures so that Hydra can keep track of
      the evolution of closure sizes. */
diff --git a/nixos/tests/all-tests.nix b/nixos/tests/all-tests.nix
new file mode 100644
index 000000000000..da87c0197d81
--- /dev/null
+++ b/nixos/tests/all-tests.nix
@@ -0,0 +1,214 @@
+{ system, pkgs, callTest }:
+# The return value of this function will be an attrset with arbitrary depth and
+# the `anything` returned by callTest at its test leafs.
+# The tests not supported by `system` will be replaced with `{}`, so that
+# `meta.tests` can contain links to those without breaking on architectures
+# where said tests are unsupported.
+# Example callTest that just extracts the derivation from the test:
+#   callTest = t: t.test;
+
+with pkgs.lib;
+
+let
+  discoverTests = val:
+    if !isAttrs val then val
+    else if hasAttr "test" val then callTest val
+    else mapAttrs (n: s: discoverTests s) val;
+  handleTest = path: args:
+    discoverTests (import path ({ inherit system pkgs; } // args));
+  handleTestOn = systems: path: args:
+    if elem system systems then handleTest path args
+    else {};
+in
+{
+  acme = handleTest ./acme.nix {};
+  atd = handleTest ./atd.nix {};
+  avahi = handleTest ./avahi.nix {};
+  bcachefs = handleTest ./bcachefs.nix {};
+  beegfs = handleTest ./beegfs.nix {};
+  bind = handleTest ./bind.nix {};
+  bittorrent = handleTest ./bittorrent.nix {};
+  #blivet = handleTest ./blivet.nix {};   # broken since 2017-07024
+  boot = handleTest ./boot.nix {};
+  boot-stage1 = handleTest ./boot-stage1.nix {};
+  borgbackup = handleTest ./borgbackup.nix {};
+  buildbot = handleTest ./buildbot.nix {};
+  cadvisor = handleTestOn ["x86_64-linux"] ./cadvisor.nix {};
+  ceph = handleTestOn ["x86_64-linux"] ./ceph.nix {};
+  certmgr = handleTest ./certmgr.nix {};
+  cfssl = handleTestOn ["x86_64-linux"] ./cfssl.nix {};
+  chromium = (handleTestOn ["x86_64-linux"] ./chromium.nix {}).stable or {};
+  cjdns = handleTest ./cjdns.nix {};
+  cloud-init = handleTest ./cloud-init.nix {};
+  codimd = handleTest ./codimd.nix {};
+  containers-bridge = handleTest ./containers-bridge.nix {};
+  containers-extra_veth = handleTest ./containers-extra_veth.nix {};
+  containers-hosts = handleTest ./containers-hosts.nix {};
+  containers-imperative = handleTest ./containers-imperative.nix {};
+  containers-ipv4 = handleTest ./containers-ipv4.nix {};
+  containers-ipv6 = handleTest ./containers-ipv6.nix {};
+  containers-macvlans = handleTest ./containers-macvlans.nix {};
+  containers-physical_interfaces = handleTest ./containers-physical_interfaces.nix {};
+  containers-restart_networking = handleTest ./containers-restart_networking.nix {};
+  containers-tmpfs = handleTest ./containers-tmpfs.nix {};
+  couchdb = handleTest ./couchdb.nix {};
+  deluge = handleTest ./deluge.nix {};
+  dhparams = handleTest ./dhparams.nix {};
+  dnscrypt-proxy = handleTestOn ["x86_64-linux"] ./dnscrypt-proxy.nix {};
+  docker = handleTestOn ["x86_64-linux"] ./docker.nix {};
+  docker-edge = handleTestOn ["x86_64-linux"] ./docker-edge.nix {};
+  docker-preloader = handleTestOn ["x86_64-linux"] ./docker-preloader.nix {};
+  docker-registry = handleTest ./docker-registry.nix {};
+  docker-tools = handleTestOn ["x86_64-linux"] ./docker-tools.nix {};
+  docker-tools-overlay = handleTestOn ["x86_64-linux"] ./docker-tools-overlay.nix {};
+  dovecot = handleTest ./dovecot.nix {};
+  # ec2-config doesn't work in a sandbox as the simulated ec2 instance needs network access
+  #ec2-config = (handleTestOn ["x86_64-linux"] ./ec2.nix {}).boot-ec2-config or {};
+  ec2-nixops = (handleTestOn ["x86_64-linux"] ./ec2.nix {}).boot-ec2-nixops or {};
+  ecryptfs = handleTest ./ecryptfs.nix {};
+  elk = handleTestOn ["x86_64-linux"] ./elk.nix {};
+  env = handleTest ./env.nix {};
+  etcd = handleTestOn ["x86_64-linux"] ./etcd.nix {};
+  ferm = handleTest ./ferm.nix {};
+  firefox = handleTest ./firefox.nix {};
+  firewall = handleTest ./firewall.nix {};
+  flatpak = handleTest ./flatpak.nix {};
+  fsck = handleTest ./fsck.nix {};
+  fwupd = handleTest ./fwupd.nix {};
+  gdk-pixbuf = handleTest ./gdk-pixbuf.nix {};
+  gitea = handleTest ./gitea.nix {};
+  gitlab = handleTest ./gitlab.nix {};
+  gitolite = handleTest ./gitolite.nix {};
+  gjs = handleTest ./gjs.nix {};
+  gnome3 = handleTest ./gnome3.nix {};
+  gnome3-gdm = handleTest ./gnome3-gdm.nix {};
+  gocd-agent = handleTest ./gocd-agent.nix {};
+  gocd-server = handleTest ./gocd-server.nix {};
+  grafana = handleTest ./grafana.nix {};
+  graphite = handleTest ./graphite.nix {};
+  hadoop.hdfs = handleTestOn [ "x86_64-linux" ] ./hadoop/hdfs.nix {};
+  hadoop.yarn = handleTestOn [ "x86_64-linux" ] ./hadoop/yarn.nix {};
+  haproxy = handleTest ./haproxy.nix {};
+  hardened = handleTest ./hardened.nix {};
+  hibernate = handleTest ./hibernate.nix {};
+  hitch = handleTest ./hitch {};
+  hocker-fetchdocker = handleTest ./hocker-fetchdocker {};
+  home-assistant = handleTest ./home-assistant.nix {};
+  hound = handleTest ./hound.nix {};
+  hydra = handleTest ./hydra {};
+  i3wm = handleTest ./i3wm.nix {};
+  iftop = handleTest ./iftop.nix {};
+  incron = handleTest tests/incron.nix {};
+  influxdb = handleTest ./influxdb.nix {};
+  initrd-network-ssh = handleTest ./initrd-network-ssh {};
+  initrdNetwork = handleTest ./initrd-network.nix {};
+  installer = handleTest ./installer.nix {};
+  ipv6 = handleTest ./ipv6.nix {};
+  jenkins = handleTest ./jenkins.nix {};
+  kafka = handleTest ./kafka.nix {};
+  kernel-latest = handleTest ./kernel-latest.nix {};
+  kernel-lts = handleTest ./kernel-lts.nix {};
+  keymap = handleTest ./keymap.nix {};
+  kubernetes.dns = handleTestOn ["x86_64-linux"] ./kubernetes/dns.nix {};
+  # kubernetes.e2e should eventually replace kubernetes.rbac when it works
+  #kubernetes.e2e = handleTestOn ["x86_64-linux"] ./kubernetes/e2e.nix {};
+  kubernetes.rbac = handleTestOn ["x86_64-linux"] ./kubernetes/rbac.nix {};
+  latestKernel.login = handleTest ./login.nix { latestKernel = true; };
+  ldap = handleTest ./ldap.nix {};
+  leaps = handleTest ./leaps.nix {};
+  #lightdm = handleTest ./lightdm.nix {};
+  login = handleTest ./login.nix {};
+  #logstash = handleTest ./logstash.nix {};
+  mathics = handleTest ./mathics.nix {};
+  matrix-synapse = handleTest ./matrix-synapse.nix {};
+  memcached = handleTest ./memcached.nix {};
+  mesos = handleTest ./mesos.nix {};
+  misc = handleTest ./misc.nix {};
+  mongodb = handleTest ./mongodb.nix {};
+  morty = handleTest ./morty.nix {};
+  mpd = handleTest ./mpd.nix {};
+  mumble = handleTest ./mumble.nix {};
+  munin = handleTest ./munin.nix {};
+  mutableUsers = handleTest ./mutable-users.nix {};
+  mysql = handleTest ./mysql.nix {};
+  mysqlBackup = handleTest ./mysql-backup.nix {};
+  mysqlReplication = handleTest ./mysql-replication.nix {};
+  nat.firewall = handleTest ./nat.nix { withFirewall = true; };
+  nat.firewall-conntrack = handleTest ./nat.nix { withFirewall = true; withConntrackHelpers = true; };
+  nat.standalone = handleTest ./nat.nix { withFirewall = false; };
+  netdata = handleTest ./netdata.nix {};
+  networking.networkd = handleTest ./networking.nix { networkd = true; };
+  networking.scripted = handleTest ./networking.nix { networkd = false; };
+  # TODO: put in networking.nix after the test becomes more complete
+  networkingProxy = handleTest ./networking-proxy.nix {};
+  nextcloud = handleTest ./nextcloud {};
+  nexus = handleTest ./nexus.nix {};
+  nfs3 = handleTest ./nfs.nix { version = 3; };
+  nfs4 = handleTest ./nfs.nix { version = 4; };
+  nghttpx = handleTest ./nghttpx.nix {};
+  nginx = handleTest ./nginx.nix {};
+  nix-ssh-serve = handleTest ./nix-ssh-serve.nix {};
+  novacomd = handleTestOn ["x86_64-linux"] ./novacomd.nix {};
+  nsd = handleTest ./nsd.nix {};
+  openldap = handleTest ./openldap.nix {};
+  opensmtpd = handleTest ./opensmtpd.nix {};
+  openssh = handleTest ./openssh.nix {};
+  osquery = handleTest ./osquery.nix {};
+  ostree = handleTest ./ostree.nix {};
+  owncloud = handleTest ./owncloud.nix {};
+  pam-oath-login = handleTest ./pam-oath-login.nix {};
+  peerflix = handleTest ./peerflix.nix {};
+  pgjwt = handleTest ./pgjwt.nix {};
+  pgmanage = handleTest ./pgmanage.nix {};
+  php-pcre = handleTest ./php-pcre.nix {};
+  plasma5 = handleTest ./plasma5.nix {};
+  plotinus = handleTest ./plotinus.nix {};
+  postgis = handleTest ./postgis.nix {};
+  postgresql = handleTest ./postgresql.nix {};
+  powerdns = handleTest ./powerdns.nix {};
+  predictable-interface-names = handleTest ./predictable-interface-names.nix {};
+  printing = handleTest ./printing.nix {};
+  prometheus = handleTest ./prometheus.nix {};
+  prometheus-exporters = handleTest ./prometheus-exporters.nix {};
+  prosody = handleTest ./prosody.nix {};
+  proxy = handleTest ./proxy.nix {};
+  quagga = handleTest ./quagga.nix {};
+  quake3 = handleTest ./quake3.nix {};
+  rabbitmq = handleTest ./rabbitmq.nix {};
+  radicale = handleTest ./radicale.nix {};
+  redmine = handleTest ./redmine.nix {};
+  rspamd = handleTest ./rspamd.nix {};
+  rsyslogd = handleTest ./rsyslogd.nix {};
+  runInMachine = handleTest ./run-in-machine.nix {};
+  rxe = handleTest ./rxe.nix {};
+  samba = handleTest ./samba.nix {};
+  sddm = handleTest ./sddm.nix {};
+  simple = handleTest ./simple.nix {};
+  slim = handleTest ./slim.nix {};
+  slurm = handleTest ./slurm.nix {};
+  smokeping = handleTest ./smokeping.nix {};
+  snapper = handleTest ./snapper.nix {};
+  solr = handleTest ./solr.nix {};
+  #statsd = handleTest ./statsd.nix {}; # statsd is broken: #45946
+  strongswan-swanctl = handleTest ./strongswan-swanctl.nix {};
+  sudo = handleTest ./sudo.nix {};
+  switchTest = handleTest ./switch-test.nix {};
+  systemd = handleTest ./systemd.nix {};
+  taskserver = handleTest ./taskserver.nix {};
+  tomcat = handleTest ./tomcat.nix {};
+  tor = handleTest ./tor.nix {};
+  transmission = handleTest ./transmission.nix {};
+  udisks2 = handleTest ./udisks2.nix {};
+  upnp = handleTest ./upnp.nix {};
+  vault = handleTest ./vault.nix {};
+  virtualbox = handleTestOn ["x86_64-linux"] ./virtualbox.nix {};
+  wordpress = handleTest ./wordpress.nix {};
+  xautolock = handleTest ./xautolock.nix {};
+  xdg-desktop-portal = handleTest ./xdg-desktop-portal.nix {};
+  xfce = handleTest ./xfce.nix {};
+  xmonad = handleTest ./xmonad.nix {};
+  xrdp = handleTest ./xrdp.nix {};
+  xss-lock = handleTest ./xss-lock.nix {};
+  yabar = handleTest ./yabar.nix {};
+  zookeeper = handleTest ./zookeeper.nix {};
+}
diff --git a/pkgs/stdenv/generic/check-meta.nix b/pkgs/stdenv/generic/check-meta.nix
index 0e93df855471..359e499cc964 100644
--- a/pkgs/stdenv/generic/check-meta.nix
+++ b/pkgs/stdenv/generic/check-meta.nix
@@ -168,9 +168,11 @@ let
     # TODO: refactor once something like Profpatsch's types-simple will land
     tests = attrsOf (mkOptionType {
       name = "test";
-      check = x: isDerivation x &&
+      check = x: x == {} || ( # Accept {} for tests that are unsupported
+        isDerivation x &&
         x ? meta.timeout &&
-        x ? meta.needsVMSupport;
+        x ? meta.needsVMSupport
+      );
       merge = lib.options.mergeOneOption;
     });
     needsVMSupport = bool;

From aade4e577bbb27f044217c51a006ab6ba544ebb5 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?L=C3=A9o=20Gaspard?= <leo@gaspard.io>
Date: Sun, 11 Nov 2018 21:27:58 +0900
Subject: [PATCH 1030/1129] tests: disable some broken tests and/or restrict to
 x86_64

---
 nixos/tests/all-tests.nix | 18 +++++++++---------
 1 file changed, 9 insertions(+), 9 deletions(-)

diff --git a/nixos/tests/all-tests.nix b/nixos/tests/all-tests.nix
index da87c0197d81..0d6dc48c9d64 100644
--- a/nixos/tests/all-tests.nix
+++ b/nixos/tests/all-tests.nix
@@ -21,15 +21,15 @@ let
     else {};
 in
 {
-  acme = handleTest ./acme.nix {};
+  acme = handleTestOn ["x86_64-linux"] ./acme.nix {};
   atd = handleTest ./atd.nix {};
   avahi = handleTest ./avahi.nix {};
-  bcachefs = handleTest ./bcachefs.nix {};
-  beegfs = handleTest ./beegfs.nix {};
+  bcachefs = handleTestOn ["x86_64-linux"] ./bcachefs.nix {}; # linux-4.18.2018.10.12 is unsupported on aarch64
+  beegfs = handleTestOn ["x86_64-linux"] ./beegfs.nix {}; # beegfs is unsupported on aarch64
   bind = handleTest ./bind.nix {};
   bittorrent = handleTest ./bittorrent.nix {};
   #blivet = handleTest ./blivet.nix {};   # broken since 2017-07024
-  boot = handleTest ./boot.nix {};
+  boot = handleTestOn ["x86_64-linux"] ./boot.nix {}; # syslinux is unsupported on aarch64
   boot-stage1 = handleTest ./boot-stage1.nix {};
   borgbackup = handleTest ./borgbackup.nix {};
   buildbot = handleTest ./buildbot.nix {};
@@ -51,7 +51,7 @@ in
   containers-physical_interfaces = handleTest ./containers-physical_interfaces.nix {};
   containers-restart_networking = handleTest ./containers-restart_networking.nix {};
   containers-tmpfs = handleTest ./containers-tmpfs.nix {};
-  couchdb = handleTest ./couchdb.nix {};
+  #couchdb = handleTest ./couchdb.nix {}; # spidermonkey-1.8.5 is marked as broken
   deluge = handleTest ./deluge.nix {};
   dhparams = handleTest ./dhparams.nix {};
   dnscrypt-proxy = handleTestOn ["x86_64-linux"] ./dnscrypt-proxy.nix {};
@@ -74,14 +74,14 @@ in
   firewall = handleTest ./firewall.nix {};
   flatpak = handleTest ./flatpak.nix {};
   fsck = handleTest ./fsck.nix {};
-  fwupd = handleTest ./fwupd.nix {};
+  fwupd = handleTestOn ["x86_64-linux"] ./fwupd.nix {}; # libsmbios is unsupported on aarch64
   gdk-pixbuf = handleTest ./gdk-pixbuf.nix {};
   gitea = handleTest ./gitea.nix {};
   gitlab = handleTest ./gitlab.nix {};
   gitolite = handleTest ./gitolite.nix {};
   gjs = handleTest ./gjs.nix {};
-  gnome3 = handleTest ./gnome3.nix {};
-  gnome3-gdm = handleTest ./gnome3-gdm.nix {};
+  gnome3 = handleTestOn ["x86_64-linux"] ./gnome3.nix {}; # libsmbios is unsupported on aarch64
+  gnome3-gdm = handleTestOn ["x86_64-linux"] ./gnome3-gdm.nix {}; # libsmbios is unsupported on aarch64
   gocd-agent = handleTest ./gocd-agent.nix {};
   gocd-server = handleTest ./gocd-server.nix {};
   grafana = handleTest ./grafana.nix {};
@@ -89,7 +89,7 @@ in
   hadoop.hdfs = handleTestOn [ "x86_64-linux" ] ./hadoop/hdfs.nix {};
   hadoop.yarn = handleTestOn [ "x86_64-linux" ] ./hadoop/yarn.nix {};
   haproxy = handleTest ./haproxy.nix {};
-  hardened = handleTest ./hardened.nix {};
+  #hardened = handleTest ./hardened.nix {}; # broken due useSandbox = true
   hibernate = handleTest ./hibernate.nix {};
   hitch = handleTest ./hitch {};
   hocker-fetchdocker = handleTest ./hocker-fetchdocker {};

From cae5598611e74dfebf98e67803d4935f95888500 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?L=C3=A9o=20Gaspard?= <leo@gaspard.io>
Date: Sun, 11 Nov 2018 22:47:49 +0900
Subject: [PATCH 1031/1129] meta.tests: drop `meta.needsVMSupport`

Its job is already handled by `requiredSystemFeatures`
---
 doc/meta.xml                       | 16 ++--------------
 nixos/lib/testing.nix              |  2 --
 pkgs/stdenv/generic/check-meta.nix |  4 +---
 3 files changed, 3 insertions(+), 19 deletions(-)

diff --git a/doc/meta.xml b/doc/meta.xml
index 51c7b2dfc88f..a7e467a78cbd 100644
--- a/doc/meta.xml
+++ b/doc/meta.xml
@@ -258,9 +258,8 @@ meta.platforms = stdenv.lib.platforms.linux;
      <para>
       An attribute set with as values tests. A test is a derivation, which
       builds successfully when the test passes, and fails to build otherwise. A
-      derivation that is a test requires some <literal>meta</literal> elements
-      to be defined: <literal>needsVMSupport</literal> (automatically filled-in
-      for NixOS tests) and <literal>timeout</literal>.
+      derivation that is a test needs to have <literal>meta.timeout</literal>
+      defined.
      </para>
      <para>
       The NixOS tests are available as <literal>nixosTests</literal> in
@@ -294,17 +293,6 @@ meta.platforms = stdenv.lib.platforms.linux;
      </para>
     </listitem>
    </varlistentry>
-   <varlistentry>
-    <term>
-     <varname>needsVMSupport</varname>
-    </term>
-    <listitem>
-     <para>
-      A boolan that states whether the derivation requires build-time support
-      for Virtual Machine to build successfully.
-     </para>
-    </listitem>
-   </varlistentry>
    <varlistentry>
     <term>
      <varname>hydraPlatforms</varname>
diff --git a/nixos/lib/testing.nix b/nixos/lib/testing.nix
index d26d4a91924b..f90fc9f7df0e 100644
--- a/nixos/lib/testing.nix
+++ b/nixos/lib/testing.nix
@@ -70,8 +70,6 @@ in rec {
             mv $i $out/coverage-data/$(dirname $(dirname $i))
           done
         '';
-
-        meta.needsVMSupport = true;
     };
 
 
diff --git a/pkgs/stdenv/generic/check-meta.nix b/pkgs/stdenv/generic/check-meta.nix
index 359e499cc964..301080f0f906 100644
--- a/pkgs/stdenv/generic/check-meta.nix
+++ b/pkgs/stdenv/generic/check-meta.nix
@@ -170,12 +170,10 @@ let
       name = "test";
       check = x: x == {} || ( # Accept {} for tests that are unsupported
         isDerivation x &&
-        x ? meta.timeout &&
-        x ? meta.needsVMSupport
+        x ? meta.timeout
       );
       merge = lib.options.mergeOneOption;
     });
-    needsVMSupport = bool;
     timeout = int;
 
     # Weirder stuff that doesn't appear in the documentation?

From 2986ce16a8012e90f0066b7bc9ccea1543644a4b Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?L=C3=A9o=20Gaspard?= <leo@gaspard.io>
Date: Sun, 11 Nov 2018 22:55:23 +0900
Subject: [PATCH 1032/1129] meta.tests: rename into passthru.tests

Nix currently rejects derivations in `meta` values. This works around
that limitation by using `passthru` instead.

Closes https://github.com/NixOS/nixpkgs/issues/50230
---
 doc/meta.xml                            | 13 ++++++++++++-
 nixos/tests/all-tests.nix               |  2 +-
 pkgs/servers/mail/dovecot/default.nix   |  9 +++------
 pkgs/servers/mail/opensmtpd/default.nix |  9 +++------
 pkgs/stdenv/generic/check-meta.nix      |  1 +
 5 files changed, 20 insertions(+), 14 deletions(-)

diff --git a/doc/meta.xml b/doc/meta.xml
index a7e467a78cbd..3abfe016d708 100644
--- a/doc/meta.xml
+++ b/doc/meta.xml
@@ -255,6 +255,17 @@ meta.platforms = stdenv.lib.platforms.linux;
      <varname>tests</varname>
     </term>
     <listitem>
+     <warning>
+      <para>
+       This attribute is special in that it is not actually under the
+       <literal>meta</literal> attribute set but rather under the
+       <literal>passthru</literal> attribute set. This is due to a current
+       limitation of Nix, and will change as soon as Nixpkgs will be able to
+       depend on a new enough version of Nix. See
+       <link xlink:href="https://github.com/NixOS/nix/issues/2532">the relevant
+       issue</link> for more details.
+      </para>
+     </warning>
      <para>
       An attribute set with as values tests. A test is a derivation, which
       builds successfully when the test passes, and fails to build otherwise. A
@@ -269,7 +280,7 @@ meta.platforms = stdenv.lib.platforms.linux;
 { /* ... */, nixosTests }:
 {
   # ...
-  meta.tests = {
+  passthru.tests = {
     basic-functionality-and-dovecot-integration = nixosTests.opensmtpd;
   };
 }
diff --git a/nixos/tests/all-tests.nix b/nixos/tests/all-tests.nix
index 0d6dc48c9d64..718a95dadd26 100644
--- a/nixos/tests/all-tests.nix
+++ b/nixos/tests/all-tests.nix
@@ -2,7 +2,7 @@
 # The return value of this function will be an attrset with arbitrary depth and
 # the `anything` returned by callTest at its test leafs.
 # The tests not supported by `system` will be replaced with `{}`, so that
-# `meta.tests` can contain links to those without breaking on architectures
+# `passthru.tests` can contain links to those without breaking on architectures
 # where said tests are unsupported.
 # Example callTest that just extracts the derivation from the test:
 #   callTest = t: t.test;
diff --git a/pkgs/servers/mail/dovecot/default.nix b/pkgs/servers/mail/dovecot/default.nix
index af1184a973b8..f80a01e20f88 100644
--- a/pkgs/servers/mail/dovecot/default.nix
+++ b/pkgs/servers/mail/dovecot/default.nix
@@ -68,11 +68,8 @@ stdenv.mkDerivation rec {
     description = "Open source IMAP and POP3 email server written with security primarily in mind";
     maintainers = with stdenv.lib.maintainers; [ peti rickynils fpletz ];
     platforms = stdenv.lib.platforms.unix;
-    # https://github.com/NixOS/nixpkgs/issues/50230 must be resolved before
-    # this can be enabled.
-    #
-    # tests = {
-    #   opensmtpd-interaction = nixosTests.opensmtpd;
-    # };
+  };
+  passthru.tests = {
+    opensmtpd-interaction = nixosTests.opensmtpd;
   };
 }
diff --git a/pkgs/servers/mail/opensmtpd/default.nix b/pkgs/servers/mail/opensmtpd/default.nix
index 5efaca40f6ee..695450f18222 100644
--- a/pkgs/servers/mail/opensmtpd/default.nix
+++ b/pkgs/servers/mail/opensmtpd/default.nix
@@ -61,11 +61,8 @@ stdenv.mkDerivation rec {
     license = licenses.isc;
     platforms = platforms.linux;
     maintainers = with maintainers; [ rickynils obadz ekleog ];
-    # https://github.com/NixOS/nixpkgs/issues/50230 must be resolved before
-    # this can be enabled.
-    #
-    # tests = {
-    #   basic-functionality-and-dovecot-interaction = nixosTests.opensmtpd;
-    # };
+  };
+  passthru.tests = {
+    basic-functionality-and-dovecot-interaction = nixosTests.opensmtpd;
   };
 }
diff --git a/pkgs/stdenv/generic/check-meta.nix b/pkgs/stdenv/generic/check-meta.nix
index 301080f0f906..d09dff10b278 100644
--- a/pkgs/stdenv/generic/check-meta.nix
+++ b/pkgs/stdenv/generic/check-meta.nix
@@ -166,6 +166,7 @@ let
     hydraPlatforms = listOf str;
     broken = bool;
     # TODO: refactor once something like Profpatsch's types-simple will land
+    # This is currently dead code due to https://github.com/NixOS/nix/issues/2532
     tests = attrsOf (mkOptionType {
       name = "test";
       check = x: x == {} || ( # Accept {} for tests that are unsupported

From 6aedf6a5c893925bf58814492d42d0b542dfabe5 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?L=C3=A9o=20Gaspard?= <leo@gaspard.io>
Date: Sun, 11 Nov 2018 23:03:09 +0900
Subject: [PATCH 1033/1129] nixosTests: use the newly-extracted all-tests.nix

---
 pkgs/top-level/all-packages.nix | 22 +++++-----------------
 1 file changed, 5 insertions(+), 17 deletions(-)

diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 018bba2aff81..f246d7febbae 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -73,23 +73,11 @@ with pkgs;
 
   ### Push NixOS tests inside the fixed point
 
-  nixosTests =
-    let
-      # TODO(Ericson2314,ekleog): Check this will work correctly with cross-
-      system = builtins.currentSystem;
-      rawTests = (import ../../nixos/release.nix {
-        nixpkgs = pkgs;
-      }).tests;
-      testNames = builtins.attrNames rawTests;
-      filteredList = builtins.filter
-        (test: rawTests.${test} ? ${system})
-        testNames;
-      finalList = map
-        (test: { name = test; value = rawTests.${test}.${system}; })
-        filteredList;
-      finalTests = builtins.listToAttrs finalList;
-    in
-    finalTests;
+  nixosTests = import ../../nixos/tests/all-tests.nix {
+    inherit pkgs;
+    system = stdenv.hostPlatform.system;
+    callTest = t: t.test;
+  };
 
   ### BUILD SUPPORT
 

From 090bd931e1087948a29d48bf2f3b4297571af6c1 Mon Sep 17 00:00:00 2001
From: Elis Hirwing <elis@hirwing.se>
Date: Sun, 11 Nov 2018 15:26:38 +0100
Subject: [PATCH 1034/1129] gitea: 1.5.2 -> 1.5.3 (#50229)

Changelog: https://github.com/go-gitea/gitea/releases/tag/v1.5.3
---
 pkgs/applications/version-management/gitea/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/version-management/gitea/default.nix b/pkgs/applications/version-management/gitea/default.nix
index a25492e4546c..8ee43dc16c1d 100644
--- a/pkgs/applications/version-management/gitea/default.nix
+++ b/pkgs/applications/version-management/gitea/default.nix
@@ -7,13 +7,13 @@ with stdenv.lib;
 
 buildGoPackage rec {
   name = "gitea-${version}";
-  version = "1.5.2";
+  version = "1.5.3";
 
   src = fetchFromGitHub {
     owner = "go-gitea";
     repo = "gitea";
     rev = "v${version}";
-    sha256 = "168pbndlh7c148p8wzkd39kd7idiba9zw7v0alp9zqcqzzayaydj";
+    sha256 = "1f8cbsd3kn4v2a6c57rwh9slgvss7gnxs96yhcy2ddwyycf6i04d";
     # Required to generate the same checksum on MacOS due to unicode encoding differences
     # More information: https://github.com/NixOS/nixpkgs/pull/48128
     extraPostFetch = ''

From 42364f9aa29ef63d19df162022ac7cb019de2ae4 Mon Sep 17 00:00:00 2001
From: Vladyslav Mykhailichenko <dywedir@pm.me>
Date: Sun, 11 Nov 2018 18:10:20 +0200
Subject: [PATCH 1035/1129] bat: 0.8.0 -> 0.9.0

---
 pkgs/tools/misc/bat/default.nix | 9 +++------
 1 file changed, 3 insertions(+), 6 deletions(-)

diff --git a/pkgs/tools/misc/bat/default.nix b/pkgs/tools/misc/bat/default.nix
index d449b3b82f92..b4913970715a 100644
--- a/pkgs/tools/misc/bat/default.nix
+++ b/pkgs/tools/misc/bat/default.nix
@@ -4,25 +4,22 @@
 
 rustPlatform.buildRustPackage rec {
   name    = "bat-${version}";
-  version = "0.8.0";
+  version = "0.9.0";
 
   src = fetchFromGitHub {
     owner  = "sharkdp";
     repo   = "bat";
     rev    = "v${version}";
-    sha256 = "1xvjw61q0qbnzj95g7g8xckcqha9jrf2172b5l7faj7i0jhmz2kx";
+    sha256 = "13c88h1m9flmx3x2h7xrnb1wy4vgdxsqahw8cqa0x61ay0019a7s";
     fetchSubmodules = true;
   };
 
-  cargoSha256 = "0xv769f2iqrgnbmb7ma9p3gbb2xpx2lhqc0kq5nizf8w8xdc5m11";
+  cargoSha256 = "1clng4rl7mq50z8d5ipmr9fapjj4qmpf4gmdnfl6vs35pq3wp9j4";
 
   nativeBuildInputs = [ cmake pkgconfig zlib ];
 
   buildInputs = stdenv.lib.optionals stdenv.isDarwin [ Security libiconv ];
 
-  # https://github.com/NixOS/nixpkgs/issues/49642
-  doCheck = !stdenv.isDarwin;
-
   postInstall = ''
     install -m 444 -Dt $out/share/man/man1 doc/bat.1
 

From 8c084007d555e6e21dc99cd194e876fd9b61a9ad Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edward=20Tj=C3=B6rnhammar?= <ed@cflags.cc>
Date: Sun, 11 Nov 2018 17:21:06 +0100
Subject: [PATCH 1036/1129] jetbrains.clion: 2018.2.4 -> 2018.2.5

---
 pkgs/applications/editors/jetbrains/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/editors/jetbrains/default.nix b/pkgs/applications/editors/jetbrains/default.nix
index f5fbf1b5f03d..7afd3716a2c9 100644
--- a/pkgs/applications/editors/jetbrains/default.nix
+++ b/pkgs/applications/editors/jetbrains/default.nix
@@ -250,12 +250,12 @@ in
 
   clion = buildClion rec {
     name = "clion-${version}";
-    version = "2018.2.4"; /* updated by script */
+    version = "2018.2.5"; /* updated by script */
     description  = "C/C++ IDE. New. Intelligent. Cross-platform";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/cpp/CLion-${version}.tar.gz";
-      sha256 = "0ljzdjvlkm37gclny652nm7kw2hlyl1iiix6h44zq7fhszp5kmyr"; /* updated by script */
+      sha256 = "0brbwgyjh38ix8nr176glmc3kr7ndi8wppxqkb1c890jw5d3916j"; /* updated by script */
     };
     wmClass = "jetbrains-clion";
     update-channel = "CLion Release"; # channel's id as in http://www.jetbrains.com/updates/updates.xml

From b8096a088efd3890502600143bafc52b9b43e9ab Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edward=20Tj=C3=B6rnhammar?= <ed@cflags.cc>
Date: Sun, 11 Nov 2018 17:21:39 +0100
Subject: [PATCH 1037/1129] jetbrains.phpstorm: 2018.2.3 -> 2018.2.5

---
 pkgs/applications/editors/jetbrains/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/editors/jetbrains/default.nix b/pkgs/applications/editors/jetbrains/default.nix
index 7afd3716a2c9..0d03ef2dcfe6 100644
--- a/pkgs/applications/editors/jetbrains/default.nix
+++ b/pkgs/applications/editors/jetbrains/default.nix
@@ -315,12 +315,12 @@ in
 
   phpstorm = buildPhpStorm rec {
     name = "phpstorm-${version}";
-    version = "2018.2.3"; /* updated by script */
+    version = "2018.2.5"; /* updated by script */
     description = "Professional IDE for Web and PHP developers";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/webide/PhpStorm-${version}.tar.gz";
-      sha256 = "1kdv3h749ly2sadixz3khaxrias3k72fi2ixrzniynwhgiqixz70"; /* updated by script */
+      sha256 = "0crr3056hlv9x2q1i1n00aavj53xkwkfy4lgyyphk81c0gly4dg1"; /* updated by script */
     };
     wmClass = "jetbrains-phpstorm";
     update-channel = "PhpStorm 2018.2";

From e61f19947057f57ce62397a4c1ad76c601125b20 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edward=20Tj=C3=B6rnhammar?= <ed@cflags.cc>
Date: Sun, 11 Nov 2018 17:22:14 +0100
Subject: [PATCH 1038/1129] jetbrains.ruby-mine: 2018.2.2 -> 2018.2.4

---
 pkgs/applications/editors/jetbrains/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/editors/jetbrains/default.nix b/pkgs/applications/editors/jetbrains/default.nix
index 0d03ef2dcfe6..1902f172cb27 100644
--- a/pkgs/applications/editors/jetbrains/default.nix
+++ b/pkgs/applications/editors/jetbrains/default.nix
@@ -367,12 +367,12 @@ in
 
   ruby-mine = buildRubyMine rec {
     name = "ruby-mine-${version}";
-    version = "2018.2.2"; /* updated by script */
+    version = "2018.2.4"; /* updated by script */
     description = "The Most Intelligent Ruby and Rails IDE";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/ruby/RubyMine-${version}.tar.gz";
-      sha256 = "0585dnbvmzxnj2am6b04lfw75rdhk0fby2cbj58pzzcjz5xlrhvq"; /* updated by script */
+      sha256 = "0dk3ch749ai5kyg9q8819ckrqw2jk4f656iqrkkpab9fjqfjylka"; /* updated by script */
     };
     wmClass = "jetbrains-rubymine";
     update-channel = "RubyMine 2018.2";

From 30422aa7d0d5ab96f7c3d7bb8ebfc7434ec12dc2 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edward=20Tj=C3=B6rnhammar?= <ed@cflags.cc>
Date: Sun, 11 Nov 2018 17:22:48 +0100
Subject: [PATCH 1039/1129] jetbrains.webstorm: 2018.2.3 -> 2018.2.5

---
 pkgs/applications/editors/jetbrains/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/editors/jetbrains/default.nix b/pkgs/applications/editors/jetbrains/default.nix
index 1902f172cb27..7d25b1ed39dd 100644
--- a/pkgs/applications/editors/jetbrains/default.nix
+++ b/pkgs/applications/editors/jetbrains/default.nix
@@ -380,12 +380,12 @@ in
 
   webstorm = buildWebStorm rec {
     name = "webstorm-${version}";
-    version = "2018.2.3"; /* updated by script */
+    version = "2018.2.5"; /* updated by script */
     description = "Professional IDE for Web and JavaScript development";
     license = stdenv.lib.licenses.unfree;
     src = fetchurl {
       url = "https://download.jetbrains.com/webstorm/WebStorm-${version}.tar.gz";
-      sha256 = "0y3a1p047knc598aamxxdmcf5nr86wk60w6nk2bhcasxjyqaw6r4"; /* updated by script */
+      sha256 = "0d4l2bf87i6kv45qmbw55hvcrnxr6zxjcjicbkjs2k01lv7y605c"; /* updated by script */
     };
     wmClass = "jetbrains-webstorm";
     update-channel = "WebStorm Release";

From 7759fe1f2253349dc0ef4185287673672ca4c84e Mon Sep 17 00:00:00 2001
From: Jason Hilton <jhilton@toyon.com>
Date: Fri, 9 Nov 2018 18:26:34 -0800
Subject: [PATCH 1040/1129] catch2: init at 2.4.2

---
 pkgs/development/libraries/catch2/default.nix | 27 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 29 insertions(+)
 create mode 100644 pkgs/development/libraries/catch2/default.nix

diff --git a/pkgs/development/libraries/catch2/default.nix b/pkgs/development/libraries/catch2/default.nix
new file mode 100644
index 000000000000..073736ce66d9
--- /dev/null
+++ b/pkgs/development/libraries/catch2/default.nix
@@ -0,0 +1,27 @@
+{ stdenv, fetchFromGitHub, cmake, python }:
+
+stdenv.mkDerivation rec {
+  name = "catch2-${version}";
+  version = "2.4.2";
+
+  src = fetchFromGitHub {
+    owner = "catchorg";
+    repo = "Catch2";
+    rev = "v${version}";
+    sha256="1105bxbvh1xxl4yxjjp6l6w6hgsh8xbdiwlnga9di5y2x92b9bjd";
+  };
+
+  nativeBuildInputs = [ cmake ];
+
+  cmakeFlags = [
+    "-H.."
+    "-DBUILD_TESTING=OFF"];
+
+  meta = with stdenv.lib; {
+    description = "A multi-paradigm automated test framework for C++ and Objective-C (and, maybe, C)";
+    homepage = http://catch-lib.net;
+    license = licenses.boost;
+    maintainers = with maintainers; [ edwtjo knedlsepp ];
+    platforms = with platforms; unix;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 018bba2aff81..bfddbd965d13 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -1108,6 +1108,8 @@ with pkgs;
 
   catch = callPackage ../development/libraries/catch { };
 
+  catch2 = callPackage ../development/libraries/catch2 { };
+
   catdoc = callPackage ../tools/text/catdoc { };
 
   catdocx = callPackage ../tools/text/catdocx { };

From 1de9c8a023a4000e250e07f18d42b900c6db6cf8 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Edward=20Tj=C3=B6rnhammar?= <ed@cflags.cc>
Date: Sun, 11 Nov 2018 17:28:04 +0100
Subject: [PATCH 1041/1129] catch: 1.12.0 -> 1.12.2

---
 pkgs/development/libraries/catch/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/catch/default.nix b/pkgs/development/libraries/catch/default.nix
index 116216d500e2..d83060fc24d8 100644
--- a/pkgs/development/libraries/catch/default.nix
+++ b/pkgs/development/libraries/catch/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "catch-${version}";
-  version = "1.12.0";
+  version = "1.12.2";
 
   src = fetchFromGitHub {
     owner = "catchorg";
     repo = "Catch";
     rev = "v${version}";
-    sha256 = "0hkcmycvyyazzi9dywnyiipnmbx399iirh5xk5g957c8zl0505kd";
+    sha256 = "1gdp5wm8khn02g2miz381llw3191k7309qj8s3jd6sasj01rhf23";
   };
 
   nativeBuildInputs = [ cmake ];

From 753743c37b11e263283f5dfcf408553c32051902 Mon Sep 17 00:00:00 2001
From: aszlig <aszlig@nix.build>
Date: Sun, 11 Nov 2018 19:29:12 +0100
Subject: [PATCH 1042/1129] libredirect: Add support for Darwin

The library can be used also on Darwin using it like this:

  NIX_REDIRECTS='foo=bar' \
  DYLD_INSERT_LIBRARIES=${libredirect}/lib/libredirect.so \
  DYLD_FORCE_FLAT_NAMESPACE=1 \
  some_program

So let's actually not hardcade gcc and add Darwin to meta.platforms.

No other changes seem to be required.

Signed-off-by: aszlig <aszlig@nix.build>
---
 pkgs/build-support/libredirect/default.nix | 9 ++++-----
 1 file changed, 4 insertions(+), 5 deletions(-)

diff --git a/pkgs/build-support/libredirect/default.nix b/pkgs/build-support/libredirect/default.nix
index d13cdd681a21..389abec982e0 100644
--- a/pkgs/build-support/libredirect/default.nix
+++ b/pkgs/build-support/libredirect/default.nix
@@ -5,15 +5,14 @@ stdenv.mkDerivation {
 
   unpackPhase = "cp ${./libredirect.c} libredirect.c";
 
-  buildPhase =
-    ''
-      gcc -Wall -std=c99 -O3 -shared libredirect.c -o libredirect.so -fPIC -ldl
-    '';
+  buildPhase = ''
+    cc -Wall -std=c99 -O3 -shared libredirect.c -o libredirect.so -fPIC -ldl
+  '';
 
   installPhase = "mkdir -p $out/lib; cp libredirect.so $out/lib";
 
   meta = {
-    platforms = stdenv.lib.platforms.linux;
+    platforms = stdenv.lib.platforms.linux ++ stdenv.lib.platforms.darwin;
     description = "An LD_PRELOAD library to intercept and rewrite the paths in glibc calls";
     longDescription = ''
       libredirect is an LD_PRELOAD library to intercept and rewrite the paths in

From 546191f4cfd2ead32c987af3269f66518ed08f1f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Sun, 11 Nov 2018 18:01:54 -0200
Subject: [PATCH 1043/1129] jxrlib: init at 1.1

---
 pkgs/development/libraries/jxrlib/default.nix | 28 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 30 insertions(+)
 create mode 100644 pkgs/development/libraries/jxrlib/default.nix

diff --git a/pkgs/development/libraries/jxrlib/default.nix b/pkgs/development/libraries/jxrlib/default.nix
new file mode 100644
index 000000000000..47c87da065ba
--- /dev/null
+++ b/pkgs/development/libraries/jxrlib/default.nix
@@ -0,0 +1,28 @@
+{ stdenv, fetchFromGitHub, python }:
+
+stdenv.mkDerivation rec {
+  name = "${pname}-${version}";
+  pname = "jxrlib";
+  version = "1.1";
+
+  # Use the source from a fork on github because CodePlex does not
+  # deliver an easily downloadable tarball.
+  src = fetchFromGitHub {
+    owner = "4creators";
+    repo = pname;
+    rev = "f7521879862b9085318e814c6157490dd9dbbdb4";
+    sha256 = "0rk3hbh00nw0wgbfbqk1szrlfg3yq7w6ar16napww3nrlm9cj65w";
+  };
+
+  nativeBuildInputs = [ python ];
+
+  makeFlags = [ "DIR_INSTALL=$(out)" "SHARED=1" ];
+
+  meta = with stdenv.lib; {
+    description = "Implementation of the JPEG XR image codec standard";
+    homepage = https://jxrlib.codeplex.com;
+    license = licenses.bsd2;
+    platforms = platforms.linux;
+    maintainers = with maintainers; [ romildo ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index bfddbd965d13..95ae763755d4 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -10261,6 +10261,8 @@ with pkgs;
 
   jsonrpc-glib = callPackage ../development/libraries/jsonrpc-glib { };
 
+  jxrlib = callPackage ../development/libraries/jxrlib { };
+
   libjson = callPackage ../development/libraries/libjson { };
 
   libb64 = callPackage ../development/libraries/libb64 { };

From e46f25addcd69bbbd1134c21b35edabafaef42f3 Mon Sep 17 00:00:00 2001
From: rht <rhtbot@protonmail.com>
Date: Sat, 3 Nov 2018 12:01:27 +0000
Subject: [PATCH 1044/1129] brave: 0.25.2 -> 0.56.12

---
 .../networking/browsers/brave/default.nix     | 50 ++++++++++++++++---
 1 file changed, 43 insertions(+), 7 deletions(-)

diff --git a/pkgs/applications/networking/browsers/brave/default.nix b/pkgs/applications/networking/browsers/brave/default.nix
index d097e0b448ca..3c0993d87339 100644
--- a/pkgs/applications/networking/browsers/brave/default.nix
+++ b/pkgs/applications/networking/browsers/brave/default.nix
@@ -30,7 +30,8 @@
   pango,
   udev,
   xorg,
-  zlib
+  zlib,
+  xdg_utils
 }:
 
 let rpath = lib.makeLibraryPath [
@@ -65,32 +66,67 @@ let rpath = lib.makeLibraryPath [
     udev
     xorg.libxcb
     zlib
+    xdg_utils
 ];
 
 
 in stdenv.mkDerivation rec {
     name = "brave";
-    version = "0.25.2";
+    version = "0.56.12";
 
     src = fetchurl {
-        url = "https://github.com/brave/browser-laptop/releases/download/v${version}dev/brave_${version}_amd64.deb";
-        sha256 = "1r3rsa6szps7mvvpqyw0mg16zn36x451dxq4nmn2l5ds5cp1f017";
+        url = "https://github.com/brave/brave-browser/releases/download/v${version}/brave-browser_${version}_amd64.deb";
+        sha256 = "1pvablwchpsm1fdhfp9kr2912yv4812r8prv5fn799qpflzxvyai";
     };
 
-    phases = [ "unpackPhase" "installPhase" ];
+    dontConfigure = true;
+    dontBuild = true;
+    dontPatchELF = true;
 
     nativeBuildInputs = [ dpkg ];
 
-    unpackPhase = "dpkg-deb -x $src .";
+    unpackPhase = "dpkg-deb --fsys-tarfile $src | tar -x --no-same-permissions --no-same-owner";
 
     installPhase = ''
         mkdir -p $out
 
         cp -R usr/* $out
+        cp -R opt/ $out/opt
+
+        export BINARYWRAPPER=$out/opt/brave.com/brave/brave-browser
+
+        # Fix path to bash in $BINARYWRAPPER
+        substituteInPlace $BINARYWRAPPER \
+            --replace /bin/bash ${stdenv.shell}
+
+        ln -sf $BINARYWRAPPER $out/bin/brave
 
         patchelf \
             --set-interpreter "$(cat $NIX_CC/nix-support/dynamic-linker)" \
-            --set-rpath "${rpath}" $out/bin/brave
+            --set-rpath "${rpath}" $out/opt/brave.com/brave/brave
+
+        # Fix paths
+        substituteInPlace $out/share/applications/brave-browser.desktop \
+            --replace /usr/bin/brave-browser $out/bin/brave
+        substituteInPlace $out/share/gnome-control-center/default-apps/brave-browser.xml \
+            --replace /opt/brave.com $out/opt/brave.com
+        substituteInPlace $out/share/menu/brave-browser.menu \
+            --replace /opt/brave.com $out/opt/brave.com
+        substituteInPlace $out/opt/brave.com/brave/default-app-block \
+            --replace /opt/brave.com $out/opt/brave.com
+
+        # Correct icons location
+        icon_sizes=("16" "22" "24" "32" "48" "64" "128" "256")
+
+        for icon in ''${icon_sizes[*]}
+        do
+            mkdir -p $out/share/icons/hicolor/$icon\x$icon/apps
+            ln -s $out/opt/brave.com/brave/product_logo_$icon.png $out/share/icons/hicolor/$icon\x$icon/apps/brave-browser.png
+        done
+
+        # Replace xdg-settings and xdg-mime
+        ln -sf ${xdg_utils}/bin/xdg-settings $out/opt/brave.com/brave/xdg-settings
+        ln -sf ${xdg_utils}/bin/xdg-mime $out/opt/brave.com/brave/xdg-mime
     '';
 
     meta = with stdenv.lib; {

From b46f5e1277d7f7226c8f7d765d8dddca8bcd615d Mon Sep 17 00:00:00 2001
From: ryan4729 <ryan4729@example.com>
Date: Sun, 11 Nov 2018 14:37:12 -0800
Subject: [PATCH 1045/1129] go: organize GOARCH and GOOS

---
 pkgs/development/compilers/go/1.11.nix | 17 ++++++++++-------
 1 file changed, 10 insertions(+), 7 deletions(-)

diff --git a/pkgs/development/compilers/go/1.11.nix b/pkgs/development/compilers/go/1.11.nix
index 59716fbcdb69..7ae372140963 100644
--- a/pkgs/development/compilers/go/1.11.nix
+++ b/pkgs/development/compilers/go/1.11.nix
@@ -131,13 +131,16 @@ stdenv.mkDerivation rec {
     substituteInPlace "src/cmd/link/internal/ld/lib.go" --replace dsymutil ${llvm}/bin/llvm-dsymutil
   '';
 
-  GOOS = if stdenv.isDarwin then "darwin" else "linux";
-  GOARCH = if stdenv.isDarwin then "amd64"
-           else if stdenv.hostPlatform.isi686 then "386"
-           else if stdenv.hostPlatform.isx86_64 then "amd64"
-           else if stdenv.hostPlatform.isAarch32 then "arm"
-           else if stdenv.hostPlatform.isAarch64 then "arm64"
-           else throw "Unsupported system";
+  GOOS = stdenv.hostPlatform.parsed.kernel.name;
+  GOARCH = {
+    "i686" = "386";
+    "x86_64" = "amd64";
+    "aarch64" = "arm64";
+    "arm" = "arm";
+    "armv5tel" = "arm";
+    "armv6l" = "arm";
+    "armv7l" = "arm";
+  }.${stdenv.hostPlatform.parsed.cpu.name} or (throw "Unsupported system");
   GOARM = toString (stdenv.lib.intersectLists [(stdenv.hostPlatform.parsed.cpu.version or "")] ["5" "6" "7"]);
   GO386 = 387; # from Arch: don't assume sse2 on i686
   CGO_ENABLED = 1;

From a459d6a879879c3c4ecb326245d7db5af3e55894 Mon Sep 17 00:00:00 2001
From: Renaud <c0bw3b@users.noreply.github.com>
Date: Sun, 11 Nov 2018 23:41:58 +0100
Subject: [PATCH 1046/1129] notepadqq: 1.2.0 -> 1.4.8

meta.homepage is now https://notepadqq.com/
---
 pkgs/applications/editors/notepadqq/default.nix | 17 ++++++++++-------
 1 file changed, 10 insertions(+), 7 deletions(-)

diff --git a/pkgs/applications/editors/notepadqq/default.nix b/pkgs/applications/editors/notepadqq/default.nix
index 6d1bba8c4d5d..ab79c3e780b2 100644
--- a/pkgs/applications/editors/notepadqq/default.nix
+++ b/pkgs/applications/editors/notepadqq/default.nix
@@ -1,13 +1,14 @@
-{ stdenv, fetchgit, pkgconfig, which, qtbase, qtsvg, qttools, qtwebkit}:
+{ stdenv, fetchFromGitHub, pkgconfig, which, qtbase, qtsvg, qttools, qtwebkit}:
 
 let
-  version = "1.2.0";
+  version = "1.4.8";
 in stdenv.mkDerivation {
   name = "notepadqq-${version}";
-  src = fetchgit {
-    url = "https://github.com/notepadqq/notepadqq.git";
-    rev = "ab074d30e02d49e0fe6957c1523e7fed239aff7d";
-    sha256 = "0j8vqsdw314qpk5lrgccm9n7gbyr14ac3s65sl1qn87pxhrz1hpg";
+  src = fetchFromGitHub {
+    owner = "notepadqq";
+    repo = "notepadqq";
+    rev = "v${version}";
+    sha256 = "0lbv4s7ng31dkznzbkmp2cvkqglmfj6lv4mbg3r410fif2nrva7k";
     fetchSubmodules = true;
   };
 
@@ -23,8 +24,10 @@ in stdenv.mkDerivation {
     export LRELEASE="lrelease"
   '';
 
+  enableParallelBuilding = true;
+
   meta = {
-    homepage = http://notepadqq.altervista.org/;
+    homepage = https://notepadqq.com/;
     description = "Notepad++-like editor for the Linux desktop";
     license = stdenv.lib.licenses.gpl3;
     platforms = stdenv.lib.platforms.linux;

From d76ec523bb78af1f4c651025b27b6e9152c10662 Mon Sep 17 00:00:00 2001
From: zimbatm <zimbatm@zimbatm.com>
Date: Mon, 12 Nov 2018 00:08:18 +0100
Subject: [PATCH 1047/1129] use  for cross-compilation

---
 pkgs/build-support/libredirect/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/build-support/libredirect/default.nix b/pkgs/build-support/libredirect/default.nix
index 389abec982e0..0c24dbeb2070 100644
--- a/pkgs/build-support/libredirect/default.nix
+++ b/pkgs/build-support/libredirect/default.nix
@@ -6,7 +6,7 @@ stdenv.mkDerivation {
   unpackPhase = "cp ${./libredirect.c} libredirect.c";
 
   buildPhase = ''
-    cc -Wall -std=c99 -O3 -shared libredirect.c -o libredirect.so -fPIC -ldl
+    $CC -Wall -std=c99 -O3 -shared libredirect.c -o libredirect.so -fPIC -ldl
   '';
 
   installPhase = "mkdir -p $out/lib; cp libredirect.so $out/lib";

From 9ef52352bdce530e00372078e43d46dfebf5e91d Mon Sep 17 00:00:00 2001
From: zimbatm <zimbatm@zimbatm.com>
Date: Mon, 12 Nov 2018 00:09:36 +0100
Subject: [PATCH 1048/1129] assume that it works on all unix platforms

---
 pkgs/build-support/libredirect/default.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/build-support/libredirect/default.nix b/pkgs/build-support/libredirect/default.nix
index 0c24dbeb2070..d3de805b2f92 100644
--- a/pkgs/build-support/libredirect/default.nix
+++ b/pkgs/build-support/libredirect/default.nix
@@ -12,7 +12,7 @@ stdenv.mkDerivation {
   installPhase = "mkdir -p $out/lib; cp libredirect.so $out/lib";
 
   meta = {
-    platforms = stdenv.lib.platforms.linux ++ stdenv.lib.platforms.darwin;
+    platforms = stdenv.lib.platforms.unix;
     description = "An LD_PRELOAD library to intercept and rewrite the paths in glibc calls";
     longDescription = ''
       libredirect is an LD_PRELOAD library to intercept and rewrite the paths in

From fa4aa7989228d24c2fe2bfb2e6ce2c89ea337df0 Mon Sep 17 00:00:00 2001
From: fuerbringer <severin@protonmail.ch>
Date: Mon, 12 Nov 2018 00:05:53 +0100
Subject: [PATCH 1049/1129] diskus: init at 0.4.0

---
 maintainers/maintainer-list.nix    |  5 +++++
 pkgs/tools/misc/diskus/default.nix | 23 +++++++++++++++++++++++
 pkgs/top-level/all-packages.nix    |  2 ++
 3 files changed, 30 insertions(+)
 create mode 100644 pkgs/tools/misc/diskus/default.nix

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index 08ff5e9108a8..f339c93ef0b8 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -1527,6 +1527,11 @@
     github = "ftrvxmtrx";
     name = "Siarhei Zirukin";
   };
+  fuerbringer = {
+    email = "severin@fuerbringer.info";
+    github = "fuerbringer";
+    name = "Severin Fürbringer";
+  };
   funfunctor = {
     email = "eocallaghan@alterapraxis.com";
     name = "Edward O'Callaghan";
diff --git a/pkgs/tools/misc/diskus/default.nix b/pkgs/tools/misc/diskus/default.nix
new file mode 100644
index 000000000000..55489aec32a2
--- /dev/null
+++ b/pkgs/tools/misc/diskus/default.nix
@@ -0,0 +1,23 @@
+{ stdenv, fetchFromGitHub, rustPlatform }:
+
+rustPlatform.buildRustPackage rec {
+  name = "diskus-${version}";
+  version = "0.4.0";
+
+  src = fetchFromGitHub {
+    owner = "sharkdp";
+    repo = "diskus";
+    rev = "cf4a5e0dc5bf3daedabe4b25343e7eb6238930c0";
+    sha256 = "1w5fnpwdsfaca2177qn0clf8j7zwgzhdckjdl2zdbs5qrdwdqrd2";
+  };
+
+  cargoSha256 = "08wm85cs0fi03a75wp276w5hgch3kd787py51jjcxdanm2viq7zv";
+
+  meta = with stdenv.lib; {
+    description = "A minimal, fast alternative to 'du -sh'";
+    homepage = https://github.com/sharkdp/diskus;
+    license = with licenses; [ asl20 /* or */ mit ];
+    maintainers = [ maintainers.fuerbringer ];
+    platforms = platforms.linux;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index bfddbd965d13..f57921c57887 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -691,6 +691,8 @@ with pkgs;
 
   cozy = callPackage ../applications/audio/cozy-audiobooks { };
 
+  diskus = callPackage ../tools/misc/diskus { };
+
   djmount = callPackage ../tools/filesystems/djmount { };
 
   dgsh = callPackage ../shells/dgsh { };

From 55cad35506551f4f871ea520e8e7d655be80b0ab Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Sun, 11 Nov 2018 22:08:16 -0500
Subject: [PATCH 1050/1129] linux: 4.20-rc1 -> 4.20-rc2

---
 pkgs/os-specific/linux/kernel/linux-testing.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/os-specific/linux/kernel/linux-testing.nix b/pkgs/os-specific/linux/kernel/linux-testing.nix
index ad7e44ed0a17..9c8d44530875 100644
--- a/pkgs/os-specific/linux/kernel/linux-testing.nix
+++ b/pkgs/os-specific/linux/kernel/linux-testing.nix
@@ -1,13 +1,13 @@
 { stdenv, buildPackages, fetchurl, perl, buildLinux, libelf, utillinux, ... } @ args:
 
 buildLinux (args // rec {
-  version = "4.20-rc1";
-  modDirVersion = "4.20.0-rc1";
+  version = "4.20-rc2";
+  modDirVersion = "4.20.0-rc2";
   extraMeta.branch = "4.20";
 
   src = fetchurl {
     url = "https://git.kernel.org/torvalds/t/linux-${version}.tar.gz";
-    sha256 = "0nf3rk8768740smkbf2ilsm40p1pnnmrpf53pmc5k1dkj4kgc0pb";
+    sha256 = "0vmzrsfdg8sjyq833szirsv83wj2lgd92hy1fw5rp7xnjavn69hc";
   };
 
   # Should the testing kernels ever be built on Hydra?

From 3d4050ce4876af83ea3fff909a1cdc97e79ecac0 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?TG=20=E2=8A=97=20=CE=98?= <*@tg-x.net>
Date: Mon, 12 Nov 2018 06:50:35 +0100
Subject: [PATCH 1051/1129] maintainers: add tg-x

---
 maintainers/maintainer-list.nix | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/maintainers/maintainer-list.nix b/maintainers/maintainer-list.nix
index f339c93ef0b8..1dcf3680334a 100644
--- a/maintainers/maintainer-list.nix
+++ b/maintainers/maintainer-list.nix
@@ -4263,6 +4263,11 @@
     github = "tex";
     name = "Milan Svoboda";
   };
+  tg-x = {
+    email = "*@tg-x.net";
+    github = "tg-x";
+    name = "TG ⊗ Θ";
+  };
   thall = {
     email = "niclas.thall@gmail.com";
     github = "thall";

From 46a46db8c17b3e07bad487d58b4941da285d233e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?TG=20=E2=8A=97=20=CE=98?= <*@tg-x.net>
Date: Mon, 12 Nov 2018 06:51:28 +0100
Subject: [PATCH 1052/1129] ltc-tools: init at 0.6.4

---
 pkgs/applications/audio/ltc-tools/default.nix | 25 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 27 insertions(+)
 create mode 100644 pkgs/applications/audio/ltc-tools/default.nix

diff --git a/pkgs/applications/audio/ltc-tools/default.nix b/pkgs/applications/audio/ltc-tools/default.nix
new file mode 100644
index 000000000000..79edfdef5040
--- /dev/null
+++ b/pkgs/applications/audio/ltc-tools/default.nix
@@ -0,0 +1,25 @@
+{stdenv, fetchFromGitHub, pkgconfig, libltc, libsndfile, jack2}:
+
+stdenv.mkDerivation rec {
+  name = "ltc-tools-${version}";
+  version = "0.6.4";
+
+  src = fetchFromGitHub {
+    owner = "x42";
+    repo = "ltc-tools";
+    rev = "v${version}";
+    sha256 = "1a7r99mwc7p5j5y453mrgph67wlznd674v4k2pfmlvc91s6lh44y";
+  };
+
+  buildInputs = [ pkgconfig libltc libsndfile jack2 ];
+
+  makeFlags = [ "PREFIX=$(out)" ];
+
+  meta = with stdenv.lib; {
+    homepage = "https://github.com/x42/ltc-tools";
+    description = "Tools to deal with linear-timecode (LTC)";
+    license = licenses.gpl2;
+    platforms = platforms.unix;
+    maintainers = with maintainers; [ tg-x ];
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 9b4f55196e54..b86318d635d5 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -17807,6 +17807,8 @@ with pkgs;
 
   looking-glass-client = callPackage ../applications/virtualization/looking-glass-client { };
 
+  ltc-tools = callPackage ../applications/audio/ltc-tools { };
+
   lumail = callPackage ../applications/networking/mailreaders/lumail {
     lua = lua5_1;
   };

From 6c2050fd9cc53cd08af85d8e516316a6e7cc5955 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Dani=C3=ABl=20de=20Kok?= <me@danieldk.eu>
Date: Sun, 11 Nov 2018 10:43:52 +0100
Subject: [PATCH 1053/1129] handbrake: 1.1.0 -> 1.1.2

Changes:

https://github.com/HandBrake/HandBrake/releases/tag/1.1.2
https://github.com/HandBrake/HandBrake/releases/tag/1.1.1

Derivation changes:

Transcoding to to MP4 was broken, failing with:

Tag avc1/0x31637661 incompatible with output codec id '28'
muxavformat: avformat_write_header failed!

Fix this using A20-avc3-hvc1-override.patch provided by upstream.
---
 pkgs/applications/video/handbrake/default.nix | 19 ++++++++++++++++---
 1 file changed, 16 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/video/handbrake/default.nix b/pkgs/applications/video/handbrake/default.nix
index 2f27eb838841..abd4973bbdf2 100644
--- a/pkgs/applications/video/handbrake/default.nix
+++ b/pkgs/applications/video/handbrake/default.nix
@@ -20,21 +20,34 @@
 
 stdenv.mkDerivation rec {
   # TODO: Release 1.2.0 would switch LibAV to FFmpeg.
-  version = "1.1.0";
+  version = "1.1.2";
   name = "handbrake-${version}";
 
   src = fetchurl {
     url = ''https://download2.handbrake.fr/${version}/HandBrake-${version}-source.tar.bz2'';
-    sha256 = "1nj0ihflisxcfkmsk7fm3b5cn7cpnpg66dk2lkp2ip6qidppqbm0";
+    sha256 = "0bny0hwlr55g2c69rsamv0xvwmfh1s4a582b9vq20xv5ly84m6ms";
   };
 
   patched_libav_12 = libav_12.overrideAttrs (super: {
-    # NOTE: 2018-04-26: HandBrake compilation (1.1.0) requires a patch of LibAV (12.3) from HandBrake team. This patch not went LibAV upstream.
     patches = (super.patches or []) ++ [(
+      # NOTE: 2018-04-26: HandBrake compilation (1.1.0) requires
+      # a patch of LibAV (12.3) from HandBrake team. This patch
+      # not went LibAV upstream.
       fetchurl {
         url = ''https://raw.githubusercontent.com/HandBrake/HandBrake/9e1f245708a157231c427c0ef9b91729d59a30e1/contrib/ffmpeg/A21-mp4-sdtp.patch'';
         sha256 = "14grzyvb1qbb90k31ibabnwmwnrc48ml6h2z0rjamdv83q45jq4g";
       })
+      # NOTE: 2018-11-11: Transcoding to MP4 can fail with:
+      #
+      # Tag avc1/0x31637661 incompatible with output codec id '28'
+      # muxavformat: avformat_write_header failed!
+      #
+      # Fix using Handbrake patch that is not upstream in libav.
+      (
+      fetchurl {
+        url = ''https://raw.githubusercontent.com/HandBrake/HandBrake/df6c26fa261423237ee2bec0bf784c32cbfda3fa/contrib/ffmpeg/A20-avc3-hvc1-override.patch'';
+        sha256 = "1vijd7bmkzp3sb6zhpcpdni8fz4h13wgglnml6cz9f44j41w2c3v";
+      })
     ];
   });
 

From 40f41772aa68f8bb4f04ec78cdee612ea8701259 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Dani=C3=ABl=20de=20Kok?= <me@danieldk.eu>
Date: Mon, 12 Nov 2018 07:45:00 +0100
Subject: [PATCH 1054/1129] tests: handbrake: test transcoding to MKV and MP4.

---
 nixos/tests/all-tests.nix |  1 +
 nixos/tests/handbrake.nix | 25 +++++++++++++++++++++++++
 2 files changed, 26 insertions(+)
 create mode 100644 nixos/tests/handbrake.nix

diff --git a/nixos/tests/all-tests.nix b/nixos/tests/all-tests.nix
index 718a95dadd26..754a8ff20b26 100644
--- a/nixos/tests/all-tests.nix
+++ b/nixos/tests/all-tests.nix
@@ -88,6 +88,7 @@ in
   graphite = handleTest ./graphite.nix {};
   hadoop.hdfs = handleTestOn [ "x86_64-linux" ] ./hadoop/hdfs.nix {};
   hadoop.yarn = handleTestOn [ "x86_64-linux" ] ./hadoop/yarn.nix {};
+  handbrake = handleTestOn ["x86_64-linux"] ./handbrake.nix {};
   haproxy = handleTest ./haproxy.nix {};
   #hardened = handleTest ./hardened.nix {}; # broken due useSandbox = true
   hibernate = handleTest ./hibernate.nix {};
diff --git a/nixos/tests/handbrake.nix b/nixos/tests/handbrake.nix
new file mode 100644
index 000000000000..ae87e1f69a7d
--- /dev/null
+++ b/nixos/tests/handbrake.nix
@@ -0,0 +1,25 @@
+import ./make-test.nix ({ pkgs, ... }:
+let
+  # Download Big Buck Bunny example, licensed under CC Attribution 3.0.
+  testMkv = pkgs.fetchurl {
+    url = "https://github.com/Matroska-Org/matroska-test-files/blob/cf0792be144ac470c4b8052cfe19bb691993e3a2/test_files/test1.mkv?raw=true";
+    sha256 = "1hfxbbgxwfkzv85pvpvx55a72qsd0hxjbm9hkl5r3590zw4s75h9";
+  };
+in {
+  name = "handbrake";
+
+  meta = {
+    maintainers = with pkgs.stdenv.lib.maintainers; [ danieldk ];
+  };
+
+  machine = { pkgs, ... }: {
+    environment.systemPackages = with pkgs; [ handbrake ];
+  };
+
+  testScript = ''
+    # Test MP4 and MKV transcoding. Since this is a short clip, transcoding typically
+    # only takes a few seconds.
+    $machine->succeed("HandBrakeCLI -i ${testMkv} -o test.mp4 -e x264 -q 20 -B 160");
+    $machine->succeed("HandBrakeCLI -i ${testMkv} -o test.mkv -e x264 -q 20 -B 160");
+  '';
+})

From 195ba2136eee92b7f26e32f4c82ce8feca0cb318 Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Mon, 12 Nov 2018 15:47:26 +0800
Subject: [PATCH 1055/1129] mosquitto: enable websockets support

---
 pkgs/servers/mqtt/mosquitto/default.nix | 5 +++++
 1 file changed, 5 insertions(+)

diff --git a/pkgs/servers/mqtt/mosquitto/default.nix b/pkgs/servers/mqtt/mosquitto/default.nix
index 231124a42efb..21fe01e8a343 100644
--- a/pkgs/servers/mqtt/mosquitto/default.nix
+++ b/pkgs/servers/mqtt/mosquitto/default.nix
@@ -25,6 +25,10 @@ stdenv.mkDerivation rec {
     substituteInPlace man/manpage.xsl \
       --replace /usr/share/xml/docbook/stylesheet/ ${docbook_xsl}/share/xml/
 
+    for f in {lib,lib/cpp,src}/CMakeLists.txt ; do
+      substituteInPlace $f --replace /sbin/ldconfig ldconfig
+    done
+
     # the manpages are not generated when using cmake
     pushd man
     make
@@ -39,6 +43,7 @@ stdenv.mkDerivation rec {
 
   cmakeFlags = [
     "-DWITH_THREADING=ON"
+    "-DWITH_WEBSOCKETS=ON"
   ];
 
   meta = with stdenv.lib; {

From ba1fddb31535c5721cf2c3913e704f0b258f656b Mon Sep 17 00:00:00 2001
From: aszlig <aszlig@nix.build>
Date: Mon, 12 Nov 2018 09:59:39 +0100
Subject: [PATCH 1056/1129] libredirect: Use extensions.sharedLibrary

This is to make sure we get the correct shared library suffix of the
target platform. While for example on Darwin it would even work with the
hardcoded .so prefix it's IMHO a bit nicer to have the actual native
extension.

Signed-off-by: aszlig <aszlig@nix.build>
---
 pkgs/build-support/libredirect/default.nix | 9 +++++++--
 1 file changed, 7 insertions(+), 2 deletions(-)

diff --git a/pkgs/build-support/libredirect/default.nix b/pkgs/build-support/libredirect/default.nix
index d3de805b2f92..fec659ff5fda 100644
--- a/pkgs/build-support/libredirect/default.nix
+++ b/pkgs/build-support/libredirect/default.nix
@@ -5,11 +5,16 @@ stdenv.mkDerivation {
 
   unpackPhase = "cp ${./libredirect.c} libredirect.c";
 
+  shlibext = stdenv.targetPlatform.extensions.sharedLibrary;
+
   buildPhase = ''
-    $CC -Wall -std=c99 -O3 -shared libredirect.c -o libredirect.so -fPIC -ldl
+    $CC -Wall -std=c99 -O3 -shared libredirect.c \
+      -o "libredirect$shlibext" -fPIC -ldl
   '';
 
-  installPhase = "mkdir -p $out/lib; cp libredirect.so $out/lib";
+  installPhase = ''
+    install -vD "libredirect$shlibext" "$out/lib/libredirect$shlibext"
+  '';
 
   meta = {
     platforms = stdenv.lib.platforms.unix;

From 6c3b9c359dc0f5edef08c66f747bc3a20a6d8d00 Mon Sep 17 00:00:00 2001
From: Lancelot SIX <lsix@lancelotsix.com>
Date: Mon, 12 Nov 2018 10:28:20 +0100
Subject: [PATCH 1057/1129] nano: 3.1 -> 3.2

See http://lists.gnu.org/archive/html/info-gnu/2018-11/msg00008.html for
release information
---
 pkgs/applications/editors/nano/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/editors/nano/default.nix b/pkgs/applications/editors/nano/default.nix
index 36c400a74faa..0e313d33736a 100644
--- a/pkgs/applications/editors/nano/default.nix
+++ b/pkgs/applications/editors/nano/default.nix
@@ -20,11 +20,11 @@ let
 
 in stdenv.mkDerivation rec {
   name = "nano-${version}";
-  version = "3.1";
+  version = "3.2";
 
   src = fetchurl {
     url = "mirror://gnu/nano/${name}.tar.xz";
-    sha256 = "17kinzyv6vwgyx2d0ym1kp65qbf7kxzwpyg21ic1rijv1aj2rh0l";
+    sha256 = "0jb3zq0v84xb0chyynkcp2jhs9660wmpkic294p4p6c96npp69yi";
   };
 
   nativeBuildInputs = [ texinfo ] ++ optional enableNls gettext;

From 34dd1c68f877912290fcad4bb8d4d3c0035ef5e6 Mon Sep 17 00:00:00 2001
From: aszlig <aszlig@nix.build>
Date: Mon, 12 Nov 2018 10:48:15 +0100
Subject: [PATCH 1058/1129] libredirect: Add a small test

This is just a sanity check on whether the library correctly wraps the
syscalls and it's using the "true" executable for posix_spawn() and
execv().

The installCheckPhase is not executed if we are cross-compiling, so this
shouldn't break cross-compilation.

One thing I'm not actually sure is whether ${coreutils}/bin/true is
universally available on all the platforms, nor whether all the
functions we use in the test are available, but we can still fix that
after we've found out about that.

Signed-off-by: aszlig <aszlig@nix.build>
---
 pkgs/build-support/libredirect/default.nix | 22 +++++++-
 pkgs/build-support/libredirect/test.c      | 59 ++++++++++++++++++++++
 2 files changed, 79 insertions(+), 2 deletions(-)
 create mode 100644 pkgs/build-support/libredirect/test.c

diff --git a/pkgs/build-support/libredirect/default.nix b/pkgs/build-support/libredirect/default.nix
index fec659ff5fda..09a3da6729a9 100644
--- a/pkgs/build-support/libredirect/default.nix
+++ b/pkgs/build-support/libredirect/default.nix
@@ -1,21 +1,39 @@
-{ stdenv }:
+{ stdenv, coreutils }:
 
 stdenv.mkDerivation {
   name = "libredirect-0";
 
-  unpackPhase = "cp ${./libredirect.c} libredirect.c";
+  unpackPhase = ''
+    cp ${./libredirect.c} libredirect.c
+    cp ${./test.c} test.c
+  '';
 
   shlibext = stdenv.targetPlatform.extensions.sharedLibrary;
 
   buildPhase = ''
     $CC -Wall -std=c99 -O3 -shared libredirect.c \
       -o "libredirect$shlibext" -fPIC -ldl
+
+    if [ -n "$doInstallCheck" ]; then
+      $CC -Wall -std=c99 -O3 test.c -o test
+    fi
   '';
 
   installPhase = ''
     install -vD "libredirect$shlibext" "$out/lib/libredirect$shlibext"
   '';
 
+  doInstallCheck = true;
+
+  installCheckPhase = if stdenv.isDarwin then ''
+    NIX_REDIRECTS="/foo/bar/test=${coreutils}/bin/true" \
+    DYLD_INSERT_LIBRARIES="$out/lib/libredirect$shlibext" \
+    DYLD_FORCE_FLAT_NAMESPACE=1 ./test
+  '' else ''
+    NIX_REDIRECTS="/foo/bar/test=${coreutils}/bin/true" \
+    LD_PRELOAD="$out/lib/libredirect$shlibext" ./test
+  '';
+
   meta = {
     platforms = stdenv.lib.platforms.unix;
     description = "An LD_PRELOAD library to intercept and rewrite the paths in glibc calls";
diff --git a/pkgs/build-support/libredirect/test.c b/pkgs/build-support/libredirect/test.c
new file mode 100644
index 000000000000..b57664db3c19
--- /dev/null
+++ b/pkgs/build-support/libredirect/test.c
@@ -0,0 +1,59 @@
+#include <assert.h>
+#include <fcntl.h>
+#include <spawn.h>
+#include <stdio.h>
+#include <unistd.h>
+
+#include <sys/stat.h>
+#include <sys/types.h>
+#include <sys/wait.h>
+
+#define TESTPATH "/foo/bar/test"
+
+extern char **environ;
+
+void test_spawn(void) {
+    pid_t pid;
+    int ret;
+    posix_spawn_file_actions_t file_actions;
+    char *argv[] = {"true", NULL};
+
+    assert(posix_spawn_file_actions_init(&file_actions) == 0);
+
+    ret = posix_spawn(&pid, TESTPATH, &file_actions, NULL, argv, environ);
+
+    assert(ret == 0);
+    assert(waitpid(pid, NULL, 0) != -1);
+}
+
+void test_execv(void) {
+    char *argv[] = {"true", NULL};
+    assert(execv(TESTPATH, argv) == 0);
+}
+
+int main(void)
+{
+    FILE *testfp;
+    int testfd;
+    struct stat testsb;
+
+    testfp = fopen(TESTPATH, "r");
+    assert(testfp != NULL);
+    fclose(testfp);
+
+    testfd = open(TESTPATH, O_RDONLY);
+    assert(testfd != -1);
+    close(testfd);
+
+    assert(access(TESTPATH, X_OK) == 0);
+
+    assert(stat(TESTPATH, &testsb) != -1);
+
+    test_spawn();
+    test_execv();
+
+    /* If all goes well, this is never reached because test_execv() replaces
+     * the current process.
+     */
+    return 0;
+}

From b230ad0e293985d8f8e3ebc575cb36b9d20e686d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Sat, 10 Nov 2018 13:35:29 +0100
Subject: [PATCH 1059/1129] python.pkgs.protobuf3_1: drop

Using the specific version of protobuf can be achieved by a simple
`python.pkgs.protobuf.override { protobuf = protobuf3_1; }`.
---
 pkgs/applications/misc/ola/default.nix | 5 ++++-
 pkgs/top-level/all-packages.nix        | 6 +++---
 pkgs/top-level/python-packages.nix     | 6 ------
 3 files changed, 7 insertions(+), 10 deletions(-)

diff --git a/pkgs/applications/misc/ola/default.nix b/pkgs/applications/misc/ola/default.nix
index 792cff818655..fce6b8426cbf 100644
--- a/pkgs/applications/misc/ola/default.nix
+++ b/pkgs/applications/misc/ola/default.nix
@@ -16,7 +16,10 @@ stdenv.mkDerivation rec {
 
   nativeBuildInputs = [ autoreconfHook bison flex pkgconfig perl ];
   buildInputs = [ libuuid cppunit protobuf3_1 zlib avahi libmicrohttpd python3 ];
-  propagatedBuildInputs = [ python3Packages.protobuf3_1 python3Packages.numpy ];
+  propagatedBuildInputs = [
+    (python3Packages.protobuf.override { protobuf = protobuf3_1; })
+    python3Packages.numpy
+  ];
 
   configureFlags = [ "--enable-python-libs" ];
 
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 018bba2aff81..b62d820e35f6 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -21679,14 +21679,14 @@ with pkgs;
     inherit (darwin.apple_sdk.frameworks) Accelerate CoreGraphics CoreVideo;
   };
 
-  caffe2 = callPackage ../development/libraries/science/math/caffe2 {
+  caffe2 = callPackage ../development/libraries/science/math/caffe2 (rec {
     eigen3 = eigen3_3;
     inherit (python3Packages) python future six numpy pydot;
     protobuf = protobuf3_1;
-    python-protobuf = python3Packages.protobuf3_1;
+    python-protobuf = python3Packages.protobuf.override { inherit protobuf; };
     # Used only for image loading.
     opencv3 = opencv3WithoutCuda;
-  };
+  });
 
   cntk = callPackage ../applications/science/math/cntk rec {
     cudaSupport = pkgs.config.cudaSupport or false;
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index e4e561682bf0..1a03ea3ad0b5 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -3771,12 +3771,6 @@ in {
     protobuf = pkgs.protobuf;
   };
 
-  protobuf3_1 = callPackage ../development/python-modules/protobuf {
-    disabled = isPyPy;
-    doCheck = !isPy3k;
-    protobuf = pkgs.protobuf3_1;
-  };
-
   psd-tools = callPackage ../development/python-modules/psd-tools { };
 
   psutil = callPackage ../development/python-modules/psutil { };

From 484a5c6152e908d15754260e8b7bcd8330593250 Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Fri, 26 Oct 2018 12:59:52 -0400
Subject: [PATCH 1060/1129] pythonPackages.ruamel_yaml: refactor move to
 python-modules

---
 .../python-modules/ruamel_yaml/default.nix    | 31 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            | 22 +------------
 2 files changed, 32 insertions(+), 21 deletions(-)
 create mode 100644 pkgs/development/python-modules/ruamel_yaml/default.nix

diff --git a/pkgs/development/python-modules/ruamel_yaml/default.nix b/pkgs/development/python-modules/ruamel_yaml/default.nix
new file mode 100644
index 000000000000..59674d82c90c
--- /dev/null
+++ b/pkgs/development/python-modules/ruamel_yaml/default.nix
@@ -0,0 +1,31 @@
+{ stdenv
+, buildPythonPackage
+, fetchPypi
+, ruamel_base
+, typing
+, ruamel_ordereddict
+, isPy3k
+}:
+
+buildPythonPackage rec {
+  pname = "ruamel.yaml";
+  version = "0.15.35";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0xggyfaj6vprggahf7cq8kp9j79rb7hn8ndk3bxj2sxvwhhliiwd";
+  };
+
+  # Tests cannot load the module to test
+  doCheck = false;
+
+  propagatedBuildInputs = [ ruamel_base typing ]
+    ++ stdenv.lib.optional (!isPy3k) ruamel_ordereddict;
+
+  meta = with stdenv.lib; {
+    description = "YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order";
+    homepage = https://bitbucket.org/ruamel/yaml;
+    license = licenses.mit;
+  };
+
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 1a03ea3ad0b5..2e96e23f968b 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -5987,27 +5987,7 @@ in {
 
   typeguard = callPackage ../development/python-modules/typeguard { };
 
-  ruamel_yaml = buildPythonPackage rec {
-    name = "ruamel.yaml-${version}";
-    version = "0.15.35";
-
-    src = pkgs.fetchurl {
-      url = "mirror://pypi/r/ruamel.yaml/${name}.tar.gz";
-      sha256 = "0xggyfaj6vprggahf7cq8kp9j79rb7hn8ndk3bxj2sxvwhhliiwd";
-    };
-
-    # Tests cannot load the module to test
-    doCheck = false;
-
-    propagatedBuildInputs = with self; [ ruamel_base typing ] ++
-    (optional (!isPy3k) self.ruamel_ordereddict);
-
-    meta = {
-      description = "YAML parser/emitter that supports roundtrip preservation of comments, seq/map flow style, and map key order";
-      homepage = https://bitbucket.org/ruamel/yaml;
-      license = licenses.mit;
-    };
-  };
+  ruamel_yaml = callPackage ../development/python-modules/ruamel_yaml { };
 
   runsnakerun = buildPythonPackage rec {
     name = "runsnakerun-2.0.4";

From 92148ea5a0ce954a850dfb57528079a4c7505d08 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Sat, 10 Nov 2018 20:12:28 +0100
Subject: [PATCH 1061/1129] python3.pkgs.homeassistant-pyozw: init at 0.1.0

---
 .../python-modules/homeassistant-pyozw/default.nix | 14 ++++++++++++++
 pkgs/top-level/python-packages.nix                 |  2 ++
 2 files changed, 16 insertions(+)
 create mode 100644 pkgs/development/python-modules/homeassistant-pyozw/default.nix

diff --git a/pkgs/development/python-modules/homeassistant-pyozw/default.nix b/pkgs/development/python-modules/homeassistant-pyozw/default.nix
new file mode 100644
index 000000000000..c4410cfdbcf1
--- /dev/null
+++ b/pkgs/development/python-modules/homeassistant-pyozw/default.nix
@@ -0,0 +1,14 @@
+{ python_openzwave, fetchPypi }:
+
+python_openzwave.overridePythonAttrs (oldAttrs: rec {
+  pname = "homeassistant_pyozw";
+  version = "0.1.0";
+
+  src = fetchPypi {
+    inherit pname version;
+    extension = "zip";
+    sha256 = "bca4062906f65db9b4668388e6755d6ea3ee9e1b02ad3ed81738bb4d32a79342";
+  };
+
+  meta.homepage = https://github.com/home-assistant/python-openzwave;
+})
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 2e96e23f968b..bd5fc273717f 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -2468,6 +2468,8 @@ in {
 
   hetzner = callPackage ../development/python-modules/hetzner { };
 
+  homeassistant-pyozw = callPackage ../development/python-modules/homeassistant-pyozw { };
+
   htmllaundry = callPackage ../development/python-modules/htmllaundry { };
 
   html5lib = callPackage ../development/python-modules/html5lib { };

From e58c5024f0dc96c62e71de34a2364e05ba22ac6f Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Mon, 12 Nov 2018 11:19:11 +0100
Subject: [PATCH 1062/1129] openzwave: 2018-04-04 -> 2018-11-04

Switch to Home Assistant's source
(https://github.com/home-assistant/open-zwave/tree/hass)
because openzwave is only used in combination with Home Assistant afaik.
---
 pkgs/development/libraries/openzwave/default.nix | 10 ++++++----
 1 file changed, 6 insertions(+), 4 deletions(-)

diff --git a/pkgs/development/libraries/openzwave/default.nix b/pkgs/development/libraries/openzwave/default.nix
index 087a22dd61ba..4150f0f466cd 100644
--- a/pkgs/development/libraries/openzwave/default.nix
+++ b/pkgs/development/libraries/openzwave/default.nix
@@ -3,16 +3,18 @@
 , systemd }:
 
 let
-  version = "2018-04-04";
+  version = "2018-11-04";
 
 in stdenv.mkDerivation rec {
   name = "openzwave-${version}";
 
+  # Use fork by Home Assistant because this package is mainly used for python.pkgs.homeassistant-pyozw.
+  # See https://github.com/OpenZWave/open-zwave/compare/master...home-assistant:hass for the difference.
   src = fetchFromGitHub {
-    owner = "OpenZWave";
+    owner = "home-assistant";
     repo = "open-zwave";
-    rev = "ab5fe966fee882bb9e8d78a91db892a60a1863d9";
-    sha256 = "0yby8ygzjn5zp5vhysxaadbzysqanwd2zakz379299qs454pr2h9";
+    rev = "2cc174ad5c935d2d17828634aca2db5a60c59237";
+    sha256 = "1d13maj93i6h792cbvqpx43ffss44dxmvbwj2777vzvvjib8m4n8";
   };
 
   nativeBuildInputs = [ doxygen fontconfig graphviz-nox libxml2 pkgconfig which ];

From dbceff85b94eca9e5ecea4fedadbe4db52bfdbf9 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Robert=20Sch=C3=BCtz?=
 <robert.schuetz@stud.uni-heidelberg.de>
Date: Sat, 10 Nov 2018 13:42:15 +0100
Subject: [PATCH 1063/1129] home-assistant: 0.81.5 -> 0.82.0

---
 .../home-assistant/component-packages.nix     | 36 +++++++++++--------
 pkgs/servers/home-assistant/default.nix       | 16 ++++++---
 pkgs/servers/home-assistant/frontend.nix      |  4 +--
 .../home-assistant/parse-requirements.py      |  4 +--
 4 files changed, 37 insertions(+), 23 deletions(-)

diff --git a/pkgs/servers/home-assistant/component-packages.nix b/pkgs/servers/home-assistant/component-packages.nix
index 7f16e24a1f72..4aba2f435ba7 100644
--- a/pkgs/servers/home-assistant/component-packages.nix
+++ b/pkgs/servers/home-assistant/component-packages.nix
@@ -2,7 +2,7 @@
 # Do not edit!
 
 {
-  version = "0.81.5";
+  version = "0.82.0";
   components = {
     "abode" = ps: with ps; [  ];
     "ads" = ps: with ps; [  ];
@@ -137,6 +137,7 @@
     "binary_sensor.rpi_gpio" = ps: with ps; [  ];
     "binary_sensor.rpi_pfio" = ps: with ps; [  ];
     "binary_sensor.satel_integra" = ps: with ps; [  ];
+    "binary_sensor.sense" = ps: with ps; [  ];
     "binary_sensor.skybell" = ps: with ps; [  ];
     "binary_sensor.sleepiq" = ps: with ps; [  ];
     "binary_sensor.spc" = ps: with ps; [  ];
@@ -317,18 +318,20 @@
     "deconz" = ps: with ps; [  ];
     "deconz.config_flow" = ps: with ps; [  ];
     "deconz.const" = ps: with ps; [  ];
+    "deconz.gateway" = ps: with ps; [  ];
     "demo" = ps: with ps; [ aiohttp-cors ];
     "device_sun_light_trigger" = ps: with ps; [  ];
     "device_tracker" = ps: with ps; [  ];
     "device_tracker.actiontec" = ps: with ps; [  ];
     "device_tracker.aruba" = ps: with ps; [ pexpect ];
-    "device_tracker.asuswrt" = ps: with ps; [ pexpect ];
+    "device_tracker.asuswrt" = ps: with ps; [  ];
     "device_tracker.automatic" = ps: with ps; [ aiohttp-cors ];
     "device_tracker.bbox" = ps: with ps; [  ];
     "device_tracker.bluetooth_le_tracker" = ps: with ps; [  ];
     "device_tracker.bluetooth_tracker" = ps: with ps; [  ];
     "device_tracker.bmw_connected_drive" = ps: with ps; [  ];
     "device_tracker.bt_home_hub_5" = ps: with ps; [  ];
+    "device_tracker.bt_smarthub" = ps: with ps; [  ];
     "device_tracker.cisco_ios" = ps: with ps; [ pexpect ];
     "device_tracker.ddwrt" = ps: with ps; [  ];
     "device_tracker.demo" = ps: with ps; [  ];
@@ -407,6 +410,7 @@
     "fan.mqtt" = ps: with ps; [ paho-mqtt ];
     "fan.template" = ps: with ps; [  ];
     "fan.tuya" = ps: with ps; [  ];
+    "fan.wemo" = ps: with ps; [  ];
     "fan.wink" = ps: with ps; [  ];
     "fan.xiaomi_miio" = ps: with ps; [ construct ];
     "fan.zha" = ps: with ps; [  ];
@@ -417,7 +421,7 @@
     "foursquare" = ps: with ps; [ aiohttp-cors ];
     "freedns" = ps: with ps; [  ];
     "fritzbox" = ps: with ps; [  ];
-    "frontend" = ps: with ps; [ aiohttp-cors ruamel_yaml ];
+    "frontend" = ps: with ps; [ aiohttp-cors ];
     "gc100" = ps: with ps; [  ];
     "geo_location" = ps: with ps; [  ];
     "geo_location.demo" = ps: with ps; [  ];
@@ -433,6 +437,7 @@
     "google_assistant.trait" = ps: with ps; [  ];
     "google_domains" = ps: with ps; [  ];
     "graphite" = ps: with ps; [  ];
+    "greeneye_monitor" = ps: with ps; [  ];
     "group" = ps: with ps; [  ];
     "habitica" = ps: with ps; [  ];
     "hangouts" = ps: with ps; [  ];
@@ -492,6 +497,7 @@
     "image_processing.openalpr_local" = ps: with ps; [  ];
     "image_processing.opencv" = ps: with ps; [ numpy ];
     "image_processing.seven_segments" = ps: with ps; [  ];
+    "image_processing.tensorflow" = ps: with ps; [ numpy pillow protobuf ];
     "influxdb" = ps: with ps; [ influxdb ];
     "input_boolean" = ps: with ps; [  ];
     "input_datetime" = ps: with ps; [  ];
@@ -611,11 +617,11 @@
     "lock.wink" = ps: with ps; [  ];
     "lock.xiaomi_aqara" = ps: with ps; [  ];
     "lock.zwave" = ps: with ps; [  ];
-    "logbook" = ps: with ps; [ aiohttp-cors ruamel_yaml sqlalchemy ];
+    "logbook" = ps: with ps; [ aiohttp-cors sqlalchemy ];
     "logentries" = ps: with ps; [  ];
     "logger" = ps: with ps; [  ];
     "logi_circle" = ps: with ps; [  ];
-    "lovelace" = ps: with ps; [ ruamel_yaml ];
+    "lovelace" = ps: with ps; [  ];
     "lutron" = ps: with ps; [  ];
     "lutron_caseta" = ps: with ps; [  ];
     "mailbox" = ps: with ps; [ aiohttp-cors ];
@@ -740,7 +746,7 @@
     "notify.hangouts" = ps: with ps; [  ];
     "notify.hipchat" = ps: with ps; [  ];
     "notify.homematic" = ps: with ps; [ pyhomematic ];
-    "notify.html5" = ps: with ps; [ aiohttp-cors ruamel_yaml ];
+    "notify.html5" = ps: with ps; [ aiohttp-cors ];
     "notify.instapush" = ps: with ps; [  ];
     "notify.ios" = ps: with ps; [ aiohttp-cors zeroconf ];
     "notify.joaoapps_join" = ps: with ps; [  ];
@@ -789,8 +795,8 @@
     "openuv" = ps: with ps; [  ];
     "openuv.config_flow" = ps: with ps; [  ];
     "openuv.const" = ps: with ps; [  ];
-    "panel_custom" = ps: with ps; [ aiohttp-cors ruamel_yaml ];
-    "panel_iframe" = ps: with ps; [ aiohttp-cors ruamel_yaml ];
+    "panel_custom" = ps: with ps; [ aiohttp-cors ];
+    "panel_iframe" = ps: with ps; [ aiohttp-cors ];
     "persistent_notification" = ps: with ps; [  ];
     "pilight" = ps: with ps; [  ];
     "plant" = ps: with ps; [  ];
@@ -842,6 +848,7 @@
     "scene.wink" = ps: with ps; [  ];
     "script" = ps: with ps; [  ];
     "scsgate" = ps: with ps; [  ];
+    "sense" = ps: with ps; [  ];
     "sensor" = ps: with ps; [  ];
     "sensor.abode" = ps: with ps; [  ];
     "sensor.ads" = ps: with ps; [  ];
@@ -929,12 +936,13 @@
     "sensor.gearbest" = ps: with ps; [  ];
     "sensor.geizhals" = ps: with ps; [  ];
     "sensor.geo_rss_events" = ps: with ps; [  ];
-    "sensor.gitlab_ci" = ps: with ps; [  ];
+    "sensor.gitlab_ci" = ps: with ps; [ python-gitlab ];
     "sensor.gitter" = ps: with ps; [  ];
     "sensor.glances" = ps: with ps; [  ];
     "sensor.google_travel_time" = ps: with ps; [  ];
     "sensor.google_wifi" = ps: with ps; [  ];
     "sensor.gpsd" = ps: with ps; [  ];
+    "sensor.greeneye_monitor" = ps: with ps; [  ];
     "sensor.gtfs" = ps: with ps; [  ];
     "sensor.habitica" = ps: with ps; [  ];
     "sensor.haveibeenpwned" = ps: with ps; [  ];
@@ -975,6 +983,7 @@
     "sensor.lyft" = ps: with ps; [  ];
     "sensor.magicseaweed" = ps: with ps; [  ];
     "sensor.melissa" = ps: with ps; [  ];
+    "sensor.meteo_france" = ps: with ps; [  ];
     "sensor.metoffice" = ps: with ps; [  ];
     "sensor.mfi" = ps: with ps; [  ];
     "sensor.mhz19" = ps: with ps; [  ];
@@ -1017,7 +1026,7 @@
     "sensor.pilight" = ps: with ps; [  ];
     "sensor.plex" = ps: with ps; [  ];
     "sensor.pocketcasts" = ps: with ps; [  ];
-    "sensor.pollen" = ps: with ps; [  ];
+    "sensor.pollen" = ps: with ps; [ numpy ];
     "sensor.postnl" = ps: with ps; [  ];
     "sensor.pushbullet" = ps: with ps; [ pushbullet ];
     "sensor.pvoutput" = ps: with ps; [  ];
@@ -1096,7 +1105,7 @@
     "sensor.twitch" = ps: with ps; [  ];
     "sensor.uber" = ps: with ps; [  ];
     "sensor.uk_transport" = ps: with ps; [  ];
-    "sensor.upnp" = ps: with ps; [ aiohttp-cors ];
+    "sensor.upnp" = ps: with ps; [  ];
     "sensor.ups" = ps: with ps; [  ];
     "sensor.uptime" = ps: with ps; [  ];
     "sensor.uscis" = ps: with ps; [  ];
@@ -1124,7 +1133,6 @@
     "sensor.xbox_live" = ps: with ps; [  ];
     "sensor.xiaomi_aqara" = ps: with ps; [  ];
     "sensor.xiaomi_miio" = ps: with ps; [ construct ];
-    "sensor.yahoo_finance" = ps: with ps; [  ];
     "sensor.yr" = ps: with ps; [ xmltodict ];
     "sensor.yweather" = ps: with ps; [ yahooweather ];
     "sensor.zabbix" = ps: with ps; [  ];
@@ -1298,7 +1306,7 @@
     "unifi.errors" = ps: with ps; [  ];
     "upcloud" = ps: with ps; [  ];
     "updater" = ps: with ps; [ distro ];
-    "upnp" = ps: with ps; [ aiohttp-cors ];
+    "upnp" = ps: with ps; [  ];
     "upnp.config_flow" = ps: with ps; [  ];
     "upnp.const" = ps: with ps; [  ];
     "upnp.device" = ps: with ps; [  ];
@@ -1362,7 +1370,7 @@
     "zone.const" = ps: with ps; [  ];
     "zone.zone" = ps: with ps; [  ];
     "zoneminder" = ps: with ps; [  ];
-    "zwave" = ps: with ps; [ pydispatcher python_openzwave ];
+    "zwave" = ps: with ps; [ homeassistant-pyozw pydispatcher ];
     "zwave.config_flow" = ps: with ps; [  ];
     "zwave.const" = ps: with ps; [  ];
     "zwave.discovery_schemas" = ps: with ps; [  ];
diff --git a/pkgs/servers/home-assistant/default.nix b/pkgs/servers/home-assistant/default.nix
index 427f35e2fbcd..a8acf277709f 100644
--- a/pkgs/servers/home-assistant/default.nix
+++ b/pkgs/servers/home-assistant/default.nix
@@ -20,8 +20,8 @@ let
     # Override the version of some packages pinned in Home Assistant's setup.py
     (mkOverride "aiohttp" "3.4.4"
       "51afec6ffa50a9da4cdef188971a802beb1ca8e8edb40fa429e5e529db3475fa")
-    (mkOverride "astral" "1.6.1"
-      "ab0c08f2467d35fcaeb7bad15274743d3ac1ad18b5391f64a0058a9cd192d37d")
+    (mkOverride "astral" "1.7.1"
+      "88086fd2006c946567285286464b2da3294a3b0cbba4410b7008ec2458f82a07")
     (mkOverride "async-timeout" "3.0.1"
       "0c3c816a028d47f659d6ff5c745cb2acf1f966da1fe5c19c77a70282b25f4c5f")
     (mkOverride "attrs" "18.2.0"
@@ -36,11 +36,17 @@ let
       "bf4d9b61dce69c49e830950aa36fad194706463b0b6dfe81425b9e0bc6644d46")
     (mkOverride "requests" "2.20.0"
       "99dcfdaaeb17caf6e526f32b6a7b780461512ab3f1d992187801694cba42770c")
+    (mkOverride "ruamel_yaml" "0.15.72"
+      "97652b9e3a76958cf6684d5d963674adf345d8cc192ddd95e2a21b22cda29f40")
     (mkOverride "voluptuous" "0.11.5"
       "567a56286ef82a9d7ae0628c5842f65f516abcb496e74f3f59f1d7b28df314ef")
     (mkOverride "voluptuous-serialize" "2.0.0"
       "44be04d87aec34bd7d31ab539341fadc505205f2299031ed9be985112c21aa41")
 
+    # used by auth.mfa_modules.totp
+    (mkOverride "pyotp" "2.2.6"
+      "dd9130dd91a0340d89a0f06f887dbd76dd07fb95a8886dc4bc401239f2eebd69")
+
     # used by check_config script
     # can be unpinned once https://github.com/home-assistant/home-assistant/issues/11917 is resolved
     (mkOverride "colorlog" "3.1.4"
@@ -79,7 +85,7 @@ let
   extraBuildInputs = extraPackages py.pkgs;
 
   # Don't forget to run parse-requirements.py after updating
-  hassVersion = "0.81.5";
+  hassVersion = "0.82.0";
 
 in with py.pkgs; buildPythonApplication rec {
   pname = "homeassistant";
@@ -94,12 +100,12 @@ in with py.pkgs; buildPythonApplication rec {
     owner = "home-assistant";
     repo = "home-assistant";
     rev = version;
-    sha256 = "1fgf9hrv7q7g8s561sir951vd27a459mh3k685xzfnhkh4si47g4";
+    sha256 = "1vvq6frzwmbnynpq6269ykifwmvm8zj5zraslsph3jidppx2bnd4";
   };
 
   propagatedBuildInputs = [
     # From setup.py
-    aiohttp astral async-timeout attrs bcrypt certifi jinja2 pyjwt cryptography pip pytz pyyaml requests voluptuous voluptuous-serialize
+    aiohttp astral async-timeout attrs bcrypt certifi jinja2 pyjwt cryptography pip pytz pyyaml requests ruamel_yaml voluptuous voluptuous-serialize
     # From http, frontend and recorder components and auth.mfa_modules.totp
     sqlalchemy aiohttp-cors hass-frontend pyotp pyqrcode
   ] ++ componentBuildInputs ++ extraBuildInputs;
diff --git a/pkgs/servers/home-assistant/frontend.nix b/pkgs/servers/home-assistant/frontend.nix
index 89d77649d971..c51a6f0472f4 100644
--- a/pkgs/servers/home-assistant/frontend.nix
+++ b/pkgs/servers/home-assistant/frontend.nix
@@ -2,11 +2,11 @@
 
 buildPythonPackage rec {
   pname = "home-assistant-frontend";
-  version = "20181026.4";
+  version = "20181103.3";
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b0610206eee06042847d89a581ecfcd71255b0e1ecff77e302237e8aa175b00d";
+    sha256 = "b1b598f637ffc4c37a3d35aa3b912216f0340cb43fa6c50f4617536669d19499";
   };
 
   propagatedBuildInputs = [ user-agents ];
diff --git a/pkgs/servers/home-assistant/parse-requirements.py b/pkgs/servers/home-assistant/parse-requirements.py
index 95b731926984..63374b017956 100755
--- a/pkgs/servers/home-assistant/parse-requirements.py
+++ b/pkgs/servers/home-assistant/parse-requirements.py
@@ -1,5 +1,5 @@
 #! /usr/bin/env nix-shell
-#! nix-shell -i python3 -p "python3.withPackages (ps: with ps; [ aiohttp astral async-timeout attrs certifi jinja2 pyjwt cryptography pip pytz pyyaml requests voluptuous ])"
+#! nix-shell -i python3 -p "python3.withPackages (ps: with ps; [ aiohttp astral async-timeout attrs certifi jinja2 pyjwt cryptography pip pytz pyyaml requests ruamel_yaml voluptuous ])"
 #
 # This script downloads Home Assistant's source tarball.
 # Inside the homeassistant/components directory, each component has an associated .py file,
@@ -93,7 +93,7 @@ def name_to_attr_path(req):
             except KeyError:
                 pass
     # Let's hope there's only one derivation with a matching name
-    assert(len(attr_paths) <= 1)
+    assert len(attr_paths) <= 1, "{} matches more than one derivation: {}".format(req, attr_paths)
     if len(attr_paths) == 1:
         return attr_paths.pop()
     else:

From 114581b05e1a655a17be4df41006b1387a2d6978 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Mon, 12 Nov 2018 09:24:29 -0200
Subject: [PATCH 1064/1129] matcha: 2018-10-30 -> 2018-11-12

---
 pkgs/misc/themes/matcha/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/misc/themes/matcha/default.nix b/pkgs/misc/themes/matcha/default.nix
index 6e14d1587a75..d76e0ed74c5d 100644
--- a/pkgs/misc/themes/matcha/default.nix
+++ b/pkgs/misc/themes/matcha/default.nix
@@ -2,13 +2,13 @@
 
 stdenv.mkDerivation rec {
   name = "matcha-${version}";
-  version = "2018-10-30";
+  version = "2018-11-12";
 
   src = fetchFromGitHub {
     owner = "vinceliuice";
     repo = "matcha";
     rev = version;
-    sha256 = "1ks30xm7jhyxgs0blxxnc9ygmyfwrwc9k8d0y0i6yb7608p8zxzq";
+    sha256 = "04alnwb3r0546y7xk2lx8bsdm47q6j89vld3g19rfb3622iv85la";
   };
 
   buildInputs = [ gdk_pixbuf librsvg ];

From a815f53c60b95716309bd711cbc9bf6de4050bcd Mon Sep 17 00:00:00 2001
From: aszlig <aszlig@nix.build>
Date: Mon, 12 Nov 2018 13:08:22 +0100
Subject: [PATCH 1065/1129] libredirect: Add preload wrapper for stat()

Pull request #50246 was merged a bit too quickly and it was supposed to
fix libredirect on Darwin. However it still failed on Darwin and this
was missed by the person merging the pull request.

The reason this was failing was that there is no __xstat* on Darwin.

So I'm adding a wrapper for stat() as well as it works on Darwin and it
still doesn't hurt on GNU/Linux.

Signed-off-by: aszlig <aszlig@nix.build>
Cc: @edolstra, @zimbatm
---
 pkgs/build-support/libredirect/libredirect.c | 7 +++++++
 1 file changed, 7 insertions(+)

diff --git a/pkgs/build-support/libredirect/libredirect.c b/pkgs/build-support/libredirect/libredirect.c
index d1e8f77fb1f6..ba1e6c57e12e 100644
--- a/pkgs/build-support/libredirect/libredirect.c
+++ b/pkgs/build-support/libredirect/libredirect.c
@@ -119,6 +119,13 @@ int __xstat64(int ver, const char * path, struct stat64 * st)
     return __xstat64_real(ver, rewrite(path, buf), st);
 }
 
+int stat(const char * path, struct stat * st)
+{
+    int (*__stat_real) (const char *, struct stat *) = dlsym(RTLD_NEXT, "stat");
+    char buf[PATH_MAX];
+    return __stat_real(rewrite(path, buf), st);
+}
+
 int * access(const char * path, int mode)
 {
     int * (*access_real) (const char *, int mode) = dlsym(RTLD_NEXT, "access");

From ff795bd45fa0ad6f40d3606c604c471da6f78ea7 Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Fri, 27 Apr 2018 14:52:19 +0800
Subject: [PATCH 1066/1129] pythonPackages.pyfttt: init at 0.3.2

---
 .../python-modules/pyfttt/default.nix         | 24 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 26 insertions(+)
 create mode 100644 pkgs/development/python-modules/pyfttt/default.nix

diff --git a/pkgs/development/python-modules/pyfttt/default.nix b/pkgs/development/python-modules/pyfttt/default.nix
new file mode 100644
index 000000000000..44d6679e47c3
--- /dev/null
+++ b/pkgs/development/python-modules/pyfttt/default.nix
@@ -0,0 +1,24 @@
+{ stdenv, buildPythonPackage, fetchPypi
+, requests }:
+
+buildPythonPackage rec {
+  pname = "pyfttt";
+  version = "0.3.2";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "10iq7c9c832ssl2xrvf62xf7znfvqzax6sq8ppsibq6wpb8dlnj5";
+  };
+
+  propagatedBuildInputs = [ requests ];
+
+  # tests need a server to run against
+  doCheck = false;
+
+  meta = with stdenv.lib; {
+    description = "Package for sending events to the IFTTT Webhooks Channel";
+    homepage = https://github.com/briandconnelly/pyfttt;
+    maintainers = with maintainers; [ peterhoeg ];
+    license = licenses.bsd2;
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 05ac04a22bce..bb338bcc5a24 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -512,6 +512,8 @@ in {
 
   pyfakefs = callPackage ../development/python-modules/pyfakefs {};
 
+  pyfttt = callPackage ../development/python-modules/pyfttt { };
+
   pygame = callPackage ../development/python-modules/pygame { };
 
   pygame-git = callPackage ../development/python-modules/pygame/git.nix { };

From f535f7e2a119236ef8b2aa5c6005247f7782254c Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Fri, 27 Apr 2018 14:53:14 +0800
Subject: [PATCH 1067/1129] home-assistant: use pyfttt

---
 pkgs/servers/home-assistant/component-packages.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/home-assistant/component-packages.nix b/pkgs/servers/home-assistant/component-packages.nix
index 01232bd94704..35790edf9d36 100644
--- a/pkgs/servers/home-assistant/component-packages.nix
+++ b/pkgs/servers/home-assistant/component-packages.nix
@@ -20,7 +20,7 @@
     "alarm_control_panel.envisalink" = ps: with ps; [  ];
     "alarm_control_panel.homematicip_cloud" = ps: with ps; [  ];
     "alarm_control_panel.ialarm" = ps: with ps; [  ];
-    "alarm_control_panel.ifttt" = ps: with ps; [ aiohttp-cors ];
+    "alarm_control_panel.ifttt" = ps: with ps; [ aiohttp-cors pyfttt ];
     "alarm_control_panel.manual" = ps: with ps; [  ];
     "alarm_control_panel.manual_mqtt" = ps: with ps; [ paho-mqtt ];
     "alarm_control_panel.mqtt" = ps: with ps; [ paho-mqtt ];
@@ -477,7 +477,7 @@
     "hue.const" = ps: with ps; [  ];
     "hue.errors" = ps: with ps; [  ];
     "hydrawise" = ps: with ps; [  ];
-    "ifttt" = ps: with ps; [ aiohttp-cors ];
+    "ifttt" = ps: with ps; [ aiohttp-cors pyfttt ];
     "ihc" = ps: with ps; [  ];
     "ihc.const" = ps: with ps; [  ];
     "ihc.ihcdevice" = ps: with ps; [  ];

From 4bdd7496ba65adc5557645f38f0586cbe950b498 Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Fri, 27 Apr 2018 19:01:20 +0800
Subject: [PATCH 1068/1129] pythonPackages.WazeRouteCalculator: init 0.6

---
 .../WazeRouteCalculator/default.nix           | 24 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 26 insertions(+)
 create mode 100644 pkgs/development/python-modules/WazeRouteCalculator/default.nix

diff --git a/pkgs/development/python-modules/WazeRouteCalculator/default.nix b/pkgs/development/python-modules/WazeRouteCalculator/default.nix
new file mode 100644
index 000000000000..e67d81eccf7e
--- /dev/null
+++ b/pkgs/development/python-modules/WazeRouteCalculator/default.nix
@@ -0,0 +1,24 @@
+{ stdenv, buildPythonPackage, fetchPypi
+, requests }:
+
+buildPythonPackage rec {
+  pname = "WazeRouteCalculator";
+  version = "0.6";
+
+  src = fetchPypi {
+    inherit pname version;
+    sha256 = "0zmnw4198a2kvqvsz1i4a3aa20r4afp2lai6fxbpq1ppv120h857";
+  };
+
+  propagatedBuildInputs = [ requests ];
+
+  # there are no tests
+  doCheck = false;
+
+  meta = with stdenv.lib; {
+    description = "Calculate actual route time and distance with Waze API";
+    homepage = https://github.com/kovacsbalu/WazeRouteCalculator;
+    license = licenses.gpl3;
+    maintainers = with maintainers; [ peterhoeg ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index bb338bcc5a24..28baa2dfbe45 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -696,6 +696,8 @@ in {
 
   pyunbound = callPackage ../tools/networking/unbound/python.nix { };
 
+  WazeRouteCalculator = callPackage ../development/python-modules/WazeRouteCalculator { };
+
   # packages defined here
 
   aafigure = callPackage ../development/python-modules/aafigure { };

From e1298bc9f02dcb485263b385aaecbd7cd85261eb Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Fri, 27 Apr 2018 19:01:56 +0800
Subject: [PATCH 1069/1129] home-assistant: use WazeRouteCalculator

---
 pkgs/servers/home-assistant/component-packages.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/servers/home-assistant/component-packages.nix b/pkgs/servers/home-assistant/component-packages.nix
index 35790edf9d36..76e639438ff3 100644
--- a/pkgs/servers/home-assistant/component-packages.nix
+++ b/pkgs/servers/home-assistant/component-packages.nix
@@ -1112,7 +1112,7 @@
     "sensor.vultr" = ps: with ps; [ vultr ];
     "sensor.waqi" = ps: with ps; [  ];
     "sensor.waterfurnace" = ps: with ps; [  ];
-    "sensor.waze_travel_time" = ps: with ps; [  ];
+    "sensor.waze_travel_time" = ps: with ps; [ WazeRouteCalculator ];
     "sensor.whois" = ps: with ps; [  ];
     "sensor.wink" = ps: with ps; [  ];
     "sensor.wirelesstag" = ps: with ps; [  ];

From 2ea5e68b2418b2b4938ec59b1d536d0b44cdc61a Mon Sep 17 00:00:00 2001
From: aszlig <aszlig@nix.build>
Date: Mon, 12 Nov 2018 15:40:41 +0100
Subject: [PATCH 1070/1129] ip2unix: 1.1.1 -> 1.2.0

Upstream changes:

  - Fixed: Don't fail when building the manual with AsciiDoc and xmllint.
  - Fixed: Some long options (--rule, --rules-file and --rules-data) were
           ignored.
  - Fixed: Manpage formatting is now more consistent.
  - Added: A new --version command line argument for showing version
           information.

With the new upstream release recommending to use AsciiDoc to generate
the manpage, I also switched to AsciiDoc instead of Asciidoctor. The
resulting manpage looks better in some ways (for example when definition
lists are used).

I also added an installCheckPhase to ensure that the manpage exists in
the resulting store path.

Signed-off-by: aszlig <aszlig@nix.build>
---
 pkgs/tools/networking/ip2unix/default.nix | 23 ++++++++++++++++++-----
 1 file changed, 18 insertions(+), 5 deletions(-)

diff --git a/pkgs/tools/networking/ip2unix/default.nix b/pkgs/tools/networking/ip2unix/default.nix
index 18a53d02b1ec..1fa1531d1837 100644
--- a/pkgs/tools/networking/ip2unix/default.nix
+++ b/pkgs/tools/networking/ip2unix/default.nix
@@ -1,27 +1,40 @@
 { stdenv, fetchFromGitHub, meson, ninja, pkgconfig, libyamlcpp, systemd
-, asciidoctor, python3Packages
+, python3Packages, asciidoc, libxslt, docbook_xml_dtd_45, docbook_xsl
+, libxml2, docbook5
 }:
 
 stdenv.mkDerivation rec {
   name = "ip2unix-${version}";
-  version = "1.1.1";
+  version = "1.2.0";
 
   src = fetchFromGitHub {
     owner = "nixcloud";
     repo = "ip2unix";
     rev = "v${version}";
-    sha256 = "0lw4f1p1frfpf5l7faqdd80d6pi9g5sx7g3wpmig9sa50k6pmc0v";
+    sha256 = "0blrhcmska06ydkl15jjgblygkwrimdnbaq3hhifgmffymfk2652";
   };
 
   nativeBuildInputs = [
-    meson ninja pkgconfig asciidoctor
-    python3Packages.pytest python3Packages.pytest-timeout
+    meson ninja pkgconfig asciidoc libxslt.bin docbook_xml_dtd_45 docbook_xsl
+    libxml2.bin docbook5 python3Packages.pytest python3Packages.pytest-timeout
   ];
 
   buildInputs = [ libyamlcpp systemd ];
 
   doCheck = true;
 
+  doInstallCheck = true;
+  installCheckPhase = ''
+    found=0
+    for man in "$out/share/man/man1"/ip2unix.1*; do
+      test -s "$man" && found=1
+    done
+    if [ $found -ne 1 ]; then
+      echo "ERROR: Manual page hasn't been generated." >&2
+      exit 1
+    fi
+  '';
+
   meta = {
     homepage = https://github.com/nixcloud/ip2unix;
     description = "Turn IP sockets into Unix domain sockets";

From 12d7f9a6408209390ddd1a6a31844d817768d0a0 Mon Sep 17 00:00:00 2001
From: aszlig <aszlig@nix.build>
Date: Mon, 12 Nov 2018 16:18:58 +0100
Subject: [PATCH 1071/1129] nixos/tests/networking: Fix syntax error

Introduced by 6c68fbd4e1f8beac39cb1f499ff90c78256262d6.

Signed-off-by: aszlig <aszlig@nix.build>
Cc: @Ekleog
---
 nixos/tests/networking.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nixos/tests/networking.nix b/nixos/tests/networking.nix
index 6843e8b26368..e689eadf1dd8 100644
--- a/nixos/tests/networking.nix
+++ b/nixos/tests/networking.nix
@@ -1,6 +1,6 @@
 { system ? builtins.currentSystem
 , config ? {}
-, pkgs ? import ../.. { inherit system config; },
+, pkgs ? import ../.. { inherit system config; }
 # bool: whether to use networkd in the tests
 , networkd }:
 

From bcab3daac7e1829de27f80ae18669607f6c19fdf Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Mon, 12 Nov 2018 16:21:56 +0100
Subject: [PATCH 1072/1129] LTS Haskell 12.18

---
 .../haskell-modules/configuration-hackage2nix.yaml          | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
index 97f2955d3a9e..23f71d57d35e 100644
--- a/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
+++ b/pkgs/development/haskell-modules/configuration-hackage2nix.yaml
@@ -45,7 +45,7 @@ default-package-overrides:
   - base-compat-batteries ==0.10.1
   # Newer versions don't work in LTS-12.x
   - cassava-megaparsec < 2
-  # LTS Haskell 12.17
+  # LTS Haskell 12.18
   - abstract-deque ==0.3
   - abstract-deque-tests ==0.3
   - abstract-par ==0.3.3
@@ -731,8 +731,8 @@ default-package-overrides:
   - fileplow ==0.1.0.0
   - filter-logger ==0.6.0.0
   - filtrable ==0.1.1.0
-  - fin ==0.0.1
   - Fin ==0.2.6.0
+  - fin ==0.0.1
   - FindBin ==0.0.5
   - find-clumpiness ==0.2.3.1
   - fingertree ==0.1.4.1
@@ -1010,8 +1010,8 @@ default-package-overrides:
   - hsdns ==1.7.1
   - hsebaysdk ==0.4.0.0
   - hsemail ==2
-  - hset ==2.2.0
   - HSet ==0.0.1
+  - hset ==2.2.0
   - hsexif ==0.6.1.6
   - hs-functors ==0.1.3.0
   - hs-GeoIP ==0.3

From 632fc6ba61295b701ab0a33f386f730b6d24802a Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Fri, 9 Nov 2018 02:30:45 +0100
Subject: [PATCH 1073/1129] hackage-packages.nix: automatic Haskell package set
 update

This update was generated by hackage2nix v2.11.1-4-g8927afe from Hackage revision
https://github.com/commercialhaskell/all-cabal-hashes/commit/1fba236a8a8f685aaf55029d20ab24d7e4cbc5ba.
---
 .../haskell-modules/hackage-packages.nix      | 869 ++++++++++++++----
 1 file changed, 697 insertions(+), 172 deletions(-)

diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix
index e0324f973b7a..0962443c79c5 100644
--- a/pkgs/development/haskell-modules/hackage-packages.nix
+++ b/pkgs/development/haskell-modules/hackage-packages.nix
@@ -27130,8 +27130,8 @@ self: {
      }:
      mkDerivation {
        pname = "antiope-athena";
-       version = "6.1.2";
-       sha256 = "0af1sd3hhi2j2bsglqi5vqs7cjh719zbzkjcxi68sy4h3783vqc2";
+       version = "6.1.3";
+       sha256 = "00n1yj3qjlcbqjb1288h74nmlhk2851mmpkrlni48ja6hy3pnacc";
        libraryHaskellDepends = [
          amazonka amazonka-athena amazonka-core base lens resourcet text
          unliftio-core
@@ -27147,8 +27147,8 @@ self: {
     ({ mkDerivation, aeson, antiope-s3, avro, base, bytestring, text }:
      mkDerivation {
        pname = "antiope-contract";
-       version = "6.1.2";
-       sha256 = "1s9xikffc3l6q7l2fmi5yz6shw90w8zgb8sc1s3d85z7kfsi87rp";
+       version = "6.1.3";
+       sha256 = "0jazg8jh0wcv5gzz2sxhb5z3s50fz6x83siih9xs456kzsickh9a";
        libraryHaskellDepends = [
          aeson antiope-s3 avro base bytestring text
        ];
@@ -27163,8 +27163,8 @@ self: {
      }:
      mkDerivation {
        pname = "antiope-core";
-       version = "6.1.2";
-       sha256 = "0bn975bcr1fm8w63m641iip22hw5alam28z73p3cjcx9wkzkfca4";
+       version = "6.1.3";
+       sha256 = "1qnbha6n0ax9gffa14dwgdklc8ilnxnccs60cfjfw8wjjfqm1wdc";
        libraryHaskellDepends = [
          amazonka amazonka-core base bytestring generic-lens http-client
          lens monad-logger mtl resourcet transformers unliftio-core
@@ -27184,8 +27184,8 @@ self: {
      }:
      mkDerivation {
        pname = "antiope-dynamodb";
-       version = "6.1.2";
-       sha256 = "04ik6ms66yiq934dqhadw4fhb5js08q6czpgb8vqsv8pvm3cj30f";
+       version = "6.1.3";
+       sha256 = "0l8arxlxy9bb5gqfn7jp4gcfzr3c2ncbcchk635g58ac0chzgaw4";
        libraryHaskellDepends = [
          amazonka amazonka-core amazonka-dynamodb antiope-core base
          generic-lens lens text unliftio-core unordered-containers
@@ -27205,8 +27205,8 @@ self: {
      }:
      mkDerivation {
        pname = "antiope-messages";
-       version = "6.1.2";
-       sha256 = "1vkjflqi2k4d74hwagfaff4gyjx5809d2yjijhmgwk5aldyydw9m";
+       version = "6.1.3";
+       sha256 = "0bk98ziv0ivwhbwd99pw54pf2788cva9bnqvv871wzxhqgd2vhx8";
        libraryHaskellDepends = [
          aeson amazonka amazonka-core amazonka-s3 amazonka-sqs antiope-s3
          base generic-lens lens lens-aeson monad-loops network-uri text
@@ -27223,25 +27223,25 @@ self: {
 
   "antiope-s3" = callPackage
     ({ mkDerivation, amazonka, amazonka-core, amazonka-s3, antiope-core
-     , base, bytestring, conduit, conduit-extra, exceptions
+     , attoparsec, base, bytestring, conduit, conduit-extra, exceptions
      , generic-lens, hedgehog, hspec, http-types, hw-hspec-hedgehog
      , lens, monad-logger, mtl, network-uri, resourcet, text
      , unliftio-core
      }:
      mkDerivation {
        pname = "antiope-s3";
-       version = "6.1.2";
-       sha256 = "1lrawihlnl1kmhqimcf59d7a2ad916ss83zjllx3x8cy6br68b4r";
+       version = "6.1.3";
+       sha256 = "167yc57r53yzfvyiz4z8kha820xfpwfa3mcb4kndlb650qa016ax";
        libraryHaskellDepends = [
-         amazonka amazonka-core amazonka-s3 antiope-core base bytestring
-         conduit conduit-extra exceptions generic-lens http-types lens
-         monad-logger mtl network-uri resourcet text unliftio-core
+         amazonka amazonka-core amazonka-s3 antiope-core attoparsec base
+         bytestring conduit conduit-extra exceptions generic-lens http-types
+         lens monad-logger mtl network-uri resourcet text unliftio-core
        ];
        testHaskellDepends = [
-         amazonka amazonka-core amazonka-s3 antiope-core base bytestring
-         conduit conduit-extra exceptions generic-lens hedgehog hspec
-         http-types hw-hspec-hedgehog lens monad-logger mtl network-uri
-         resourcet text unliftio-core
+         amazonka amazonka-core amazonka-s3 antiope-core attoparsec base
+         bytestring conduit conduit-extra exceptions generic-lens hedgehog
+         hspec http-types hw-hspec-hedgehog lens monad-logger mtl
+         network-uri resourcet text unliftio-core
        ];
        license = stdenv.lib.licenses.mit;
        hydraPlatforms = stdenv.lib.platforms.none;
@@ -27253,8 +27253,8 @@ self: {
      }:
      mkDerivation {
        pname = "antiope-sns";
-       version = "6.1.2";
-       sha256 = "0b6blhcc1dplc16v9k12jn9s9ii5575sj9hm4kbla8483j24rd3k";
+       version = "6.1.3";
+       sha256 = "1knxyvzr566qwaa6167w64v8rlnr89350cca46vcs50rcr7hdjpj";
        libraryHaskellDepends = [
          aeson amazonka amazonka-core amazonka-sns base generic-lens lens
          text unliftio-core
@@ -27274,8 +27274,8 @@ self: {
      }:
      mkDerivation {
        pname = "antiope-sqs";
-       version = "6.1.2";
-       sha256 = "1d508kcsm1bxz768fxin5jc6y7jqskdxxpgl1z5n1579aq7wb0ia";
+       version = "6.1.3";
+       sha256 = "0xzcmjaniqprs2qachjiqzm4cxhgw4l6w7vg7sfp0b0l3m4kz4hh";
        libraryHaskellDepends = [
          aeson amazonka amazonka-core amazonka-s3 amazonka-sqs
          antiope-messages antiope-s3 base generic-lens lens lens-aeson
@@ -27374,8 +27374,8 @@ self: {
      }:
      mkDerivation {
        pname = "aos-signature";
-       version = "0.1.0";
-       sha256 = "1nyizswc7jc6hylb57nsmpqndvqm8mk1wi2fi1l1cqgbkisrxmy5";
+       version = "0.1.1";
+       sha256 = "1sm925sr3ifi44wp7ndgjwwk3d3xy75ai6kgll573ngdicy3b2n3";
        libraryHaskellDepends = [
          base bytestring cryptonite memory mtl protolude random
        ];
@@ -28220,6 +28220,38 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "apply-refact_0_6_0_0" = callPackage
+    ({ mkDerivation, base, containers, directory, filemanip, filepath
+     , ghc, ghc-exactprint, mtl, optparse-applicative, process, refact
+     , silently, syb, tasty, tasty-expected-failure, tasty-golden
+     , temporary, transformers, unix-compat
+     }:
+     mkDerivation {
+       pname = "apply-refact";
+       version = "0.6.0.0";
+       sha256 = "0p2mqgjcqr1zcmk8zgr0yq7g8z1agsa6l493lkj6g3ya9lyhxgig";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         base containers directory filemanip ghc ghc-exactprint mtl process
+         refact syb temporary transformers unix-compat
+       ];
+       executableHaskellDepends = [
+         base containers directory filemanip filepath ghc ghc-exactprint mtl
+         optparse-applicative process refact syb temporary transformers
+         unix-compat
+       ];
+       testHaskellDepends = [
+         base containers directory filemanip filepath ghc ghc-exactprint mtl
+         optparse-applicative process refact silently syb tasty
+         tasty-expected-failure tasty-golden temporary transformers
+         unix-compat
+       ];
+       description = "Perform refactorings specified by the refact library";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "apportionment" = callPackage
     ({ mkDerivation, base, containers, utility-ht }:
      mkDerivation {
@@ -31868,17 +31900,18 @@ self: {
 
   "aws-easy" = callPackage
     ({ mkDerivation, amazonka, amazonka-dynamodb, amazonka-s3, base
-     , bytestring, lens, resourcet, split, template-haskell, text
-     , unordered-containers
+     , bytestring, lens, monad-control, resourcet, split
+     , template-haskell, text, unordered-containers
      }:
      mkDerivation {
        pname = "aws-easy";
-       version = "0.1.0.1";
-       sha256 = "0sl3whg7x02c3cph5p72rlkycsr2m3ni0kad5rs0q644wgvhqvm5";
+       version = "0.1.0.2";
+       sha256 = "16a0dfgd6ggm5b4g75913b5pc0s5hdh7n1h3j22d4j50knd8j5r4";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
-         amazonka base bytestring lens resourcet template-haskell
+         amazonka base bytestring lens monad-control resourcet
+         template-haskell
        ];
        executableHaskellDepends = [
          amazonka amazonka-dynamodb amazonka-s3 base lens split text
@@ -32431,6 +32464,24 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "azure-email" = callPackage
+    ({ mkDerivation, aeson, base, base64-bytestring, bytestring
+     , cryptonite, exceptions, http-client, http-client-tls, lens-aeson
+     , microlens, RSA, text, time, uuid, wreq
+     }:
+     mkDerivation {
+       pname = "azure-email";
+       version = "0.1.0.0";
+       sha256 = "108xfmq9mb8fxy06six0id7sf8rpazknqx4plk93fl34xyrwald5";
+       libraryHaskellDepends = [
+         aeson base base64-bytestring bytestring cryptonite exceptions
+         http-client http-client-tls lens-aeson microlens RSA text time uuid
+         wreq
+       ];
+       description = "send email with microsoft azure";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "azure-service-api" = callPackage
     ({ mkDerivation, base, binary, bytestring, case-insensitive
      , certificate, crypto-pubkey-types, http-conduit, hxt, hxt-xpath
@@ -39893,14 +39944,14 @@ self: {
 
   "btree" = callPackage
     ({ mkDerivation, base, clock, containers, ghc-prim, hashable
-     , MonadRandom, primitive, smallcheck, tasty, tasty-hunit
-     , tasty-smallcheck, transformers
+     , initialize, MonadRandom, primitive, smallcheck, tasty
+     , tasty-hunit, tasty-smallcheck, transformers
      }:
      mkDerivation {
        pname = "btree";
-       version = "0.3.1";
-       sha256 = "071ghhjzg7c6m87nh2q53kqbff9hx782h6c1z5s9pwl2b7r8cc7g";
-       libraryHaskellDepends = [ base ghc-prim primitive ];
+       version = "0.4.0";
+       sha256 = "04jbvd247i8bfplyljp5937fw9x85w4v613kpzyb15z7nw2xr8l9";
+       libraryHaskellDepends = [ base ghc-prim initialize primitive ];
        testHaskellDepends = [
          base containers hashable MonadRandom primitive smallcheck tasty
          tasty-hunit tasty-smallcheck transformers
@@ -41783,8 +41834,8 @@ self: {
        pname = "cabal-install";
        version = "2.4.0.0";
        sha256 = "1xmyl0x8wqfrnray6ky5wy0g0samv4264fbdlzxhqsvk9dbfja8k";
-       revision = "1";
-       editedCabalFile = "0cni9i6f6kbfl6f5gypb9ky94ib1w6d0nkd05j4lmrjadnxss49a";
+       revision = "2";
+       editedCabalFile = "1xil5pim6j1ckqj61zz6l7xpfxxr3rkw2hvpws2f7pr9shk645dl";
        isLibrary = false;
        isExecutable = true;
        setupHaskellDepends = [ base Cabal filepath process ];
@@ -50609,8 +50660,8 @@ self: {
      }:
      mkDerivation {
        pname = "composite-aeson";
-       version = "0.5.4.0";
-       sha256 = "08rmv82v5ipkcb46pcadx1s8c1v532l8ma2qlgiflq6jnxf7y0zn";
+       version = "0.5.5.0";
+       sha256 = "1hmhnkfmdjm5q8lkvlyr7rzs1lfycnblz3q2y8aziy27j7pvnz6h";
        libraryHaskellDepends = [
          aeson aeson-better-errors base composite-base containers
          contravariant generic-deriving hashable lens mmorph mtl profunctors
@@ -50634,8 +50685,8 @@ self: {
      }:
      mkDerivation {
        pname = "composite-aeson-refined";
-       version = "0.5.4.0";
-       sha256 = "1x5vkxzj0afar4w2djx9s7h3vy9aa5my9wfks8n4ajlv92fch1zm";
+       version = "0.5.5.0";
+       sha256 = "0mm0dbsxqw5m78jgdn6vnbck2icqkzgwqyc3c3ghyz46cymd7pjz";
        libraryHaskellDepends = [
          aeson-better-errors base composite-aeson mtl refined
        ];
@@ -50647,19 +50698,20 @@ self: {
   "composite-base" = callPackage
     ({ mkDerivation, base, exceptions, hspec, lens, monad-control, mtl
      , profunctors, QuickCheck, template-haskell, text, transformers
-     , transformers-base, vinyl
+     , transformers-base, unliftio-core, vinyl
      }:
      mkDerivation {
        pname = "composite-base";
-       version = "0.5.4.0";
-       sha256 = "0brycxdwf4051qvad4b4ak47dl27qn3izv1bcqlpva01jvb6h21j";
+       version = "0.5.5.0";
+       sha256 = "0qlg979cwkdlfpcwh7r0qr9fjs525b3xly0invr358h2g1lgi0fm";
        libraryHaskellDepends = [
          base exceptions lens monad-control mtl profunctors template-haskell
-         text transformers transformers-base vinyl
+         text transformers transformers-base unliftio-core vinyl
        ];
        testHaskellDepends = [
          base exceptions hspec lens monad-control mtl profunctors QuickCheck
-         template-haskell text transformers transformers-base vinyl
+         template-haskell text transformers transformers-base unliftio-core
+         vinyl
        ];
        description = "Shared utilities for composite-* packages";
        license = stdenv.lib.licenses.bsd3;
@@ -50671,8 +50723,8 @@ self: {
      }:
      mkDerivation {
        pname = "composite-ekg";
-       version = "0.5.4.0";
-       sha256 = "051dw8ncpsk2k05ipvlnkwv2gy6719w69v1hhwrryy3dad0f4wc3";
+       version = "0.5.5.0";
+       sha256 = "0bawdcx21dd0szxnnxs2iinzz6h4w2phk7mfs26fxiqx3f375lm4";
        libraryHaskellDepends = [
          base composite-base ekg-core lens text vinyl
        ];
@@ -50688,8 +50740,8 @@ self: {
      }:
      mkDerivation {
        pname = "composite-opaleye";
-       version = "0.5.4.0";
-       sha256 = "1k71v4dz4vl70ignjp6hgw6j4c9hdgafd9x973dk7w332m2vjdpn";
+       version = "0.5.5.0";
+       sha256 = "0s54g9c1lm3jrdj44cvzxgbfaf7l2fdq2yy25vhqdmww50h8q1cx";
        libraryHaskellDepends = [
          base bytestring composite-base lens opaleye postgresql-simple
          product-profunctors profunctors template-haskell text vinyl
@@ -50711,8 +50763,8 @@ self: {
      }:
      mkDerivation {
        pname = "composite-swagger";
-       version = "0.5.4.0";
-       sha256 = "0i2jfchl88mrk9kmf8yv7cbv006ghilqsnbic7ddsbkzrjy1vdw0";
+       version = "0.5.5.0";
+       sha256 = "1qisvrs93jnrrjyhzdn0xwq54jc1mc8avpzq41a39ak5xdslzf6a";
        libraryHaskellDepends = [
          base composite-base insert-ordered-containers lens swagger2
          template-haskell text vinyl
@@ -56714,23 +56766,26 @@ self: {
      }) {};
 
   "cuckoo-filter" = callPackage
-    ({ mkDerivation, aeson, base, cereal, containers, criterion
-     , hashable, QuickCheck, random, tasty, tasty-hunit
-     , tasty-quickcheck
+    ({ mkDerivation, aeson, array, base, bytestring, cereal, containers
+     , criterion, hashable, QuickCheck, random, tasty, tasty-hunit
+     , tasty-quickcheck, time
      }:
      mkDerivation {
        pname = "cuckoo-filter";
-       version = "0.1.0.2";
-       sha256 = "16ql9qvf1qsbnk1wxy3d5iqyk0kyx9w27vq284gr34yqd18dpvk5";
+       version = "0.2.0.1";
+       sha256 = "01l1ilxdd83l60f5hmpajwszn77lfmk16aqygg1jz45zkrd3scnb";
        isLibrary = true;
        isExecutable = true;
-       libraryHaskellDepends = [ aeson base cereal containers hashable ];
+       libraryHaskellDepends = [
+         aeson array base bytestring cereal containers hashable time
+       ];
        executableHaskellDepends = [
-         aeson base cereal containers criterion hashable random
+         aeson array base bytestring cereal containers criterion hashable
+         random time
        ];
        testHaskellDepends = [
-         aeson base cereal containers hashable QuickCheck tasty tasty-hunit
-         tasty-quickcheck
+         aeson array base bytestring cereal containers hashable QuickCheck
+         tasty tasty-hunit tasty-quickcheck time
        ];
        description = "Pure and impure Cuckoo Filter";
        license = stdenv.lib.licenses.mit;
@@ -66526,15 +66581,15 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
-  "dotenv_0_6_0_3" = callPackage
+  "dotenv_0_7_0_0" = callPackage
     ({ mkDerivation, base, base-compat, containers, directory
      , exceptions, hspec, hspec-megaparsec, megaparsec
      , optparse-applicative, process, text, transformers, yaml
      }:
      mkDerivation {
        pname = "dotenv";
-       version = "0.6.0.3";
-       sha256 = "0dckfs69k3hqfjrpxkk30liq52pjd2424r8gp6i8xb0zk1xlsqgk";
+       version = "0.7.0.0";
+       sha256 = "1rxr90jcn1swfr4sac331w44cm4c7ci87ll2d2w03hbdlysvdv8h";
        isLibrary = true;
        isExecutable = true;
        enableSeparateDataOutput = true;
@@ -68931,20 +68986,20 @@ self: {
   "egison" = callPackage
     ({ mkDerivation, array, base, containers, criterion, deepseq
      , directory, filepath, ghc, ghc-paths, Glob, hashable, haskeline
-     , HUnit, mtl, parallel, parsec, process, random, regex-tdfa, split
-     , test-framework, test-framework-hunit, text, transformers
+     , HUnit, lens, mtl, parallel, parsec, process, random, regex-tdfa
+     , split, test-framework, test-framework-hunit, text, transformers
      , unordered-containers, vector
      }:
      mkDerivation {
        pname = "egison";
-       version = "3.7.12";
-       sha256 = "0dmy9hxamjpp553ipkfjwh8j3bxqql99idxcxkdsj1x4ixgm2m2g";
+       version = "3.7.13";
+       sha256 = "1kxlg7znyv4iaygm6gk50zw4vcijfmc16vl5bwif179v3r8nrpxn";
        isLibrary = true;
        isExecutable = true;
        enableSeparateDataOutput = true;
        libraryHaskellDepends = [
          array base containers directory ghc ghc-paths hashable haskeline
-         mtl parallel parsec process random regex-tdfa split text
+         lens mtl parallel parsec process random regex-tdfa split text
          transformers unordered-containers vector
        ];
        executableHaskellDepends = [
@@ -69410,8 +69465,8 @@ self: {
        pname = "ekg-wai";
        version = "0.1.0.3";
        sha256 = "1sd2fz4l4slizm179x9cskqdvrpf6w4d779kah9hrnk3nqbmklxz";
-       revision = "1";
-       editedCabalFile = "0crcpwrnh1pi5n4dlp9cwminj1gls9ywm4fgvisafh480097b100";
+       revision = "2";
+       editedCabalFile = "17kca2wzlcv8nxyq096fv57jfklhz4ibnvf5nqqdszczb03j3dnn";
        enableSeparateDataOutput = true;
        libraryHaskellDepends = [
          aeson base bytestring ekg-core ekg-json filepath http-types network
@@ -73641,8 +73696,8 @@ self: {
      }:
      mkDerivation {
        pname = "extensible-effects";
-       version = "3.1.0.1";
-       sha256 = "1znqhcx5y4mpkbib18nma2c6bw4wxyxlxg3s8kafdalrx61rdhy3";
+       version = "3.1.0.2";
+       sha256 = "0g568pp3sxzzzcpbcrvx76msn58nn41g1r4wq8sfvvg1hb28xpf5";
        libraryHaskellDepends = [ base monad-control transformers-base ];
        testHaskellDepends = [
          base doctest HUnit monad-control QuickCheck silently test-framework
@@ -75129,6 +75184,31 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "feed_1_0_1_0" = callPackage
+    ({ mkDerivation, base, base-compat, bytestring, HUnit
+     , markdown-unlit, old-locale, old-time, safe, test-framework
+     , test-framework-hunit, text, time, time-locale-compat, utf8-string
+     , xml-conduit, xml-types
+     }:
+     mkDerivation {
+       pname = "feed";
+       version = "1.0.1.0";
+       sha256 = "076krkyvbh24s50chdw3nz6w2svwchys65ppjzlm8gy42ddhbgc7";
+       enableSeparateDataOutput = true;
+       libraryHaskellDepends = [
+         base base-compat bytestring old-locale old-time safe text time
+         time-locale-compat utf8-string xml-conduit xml-types
+       ];
+       testHaskellDepends = [
+         base base-compat HUnit old-time test-framework test-framework-hunit
+         text time xml-conduit xml-types
+       ];
+       testToolDepends = [ markdown-unlit ];
+       description = "Interfacing with RSS (v 0.9x, 2.x, 1.0) + Atom feeds.";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "feed-cli" = callPackage
     ({ mkDerivation, base, directory, feed, old-locale, old-time, time
      , xml
@@ -79715,6 +79795,74 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "freer-simple-catching" = callPackage
+    ({ mkDerivation, base, freer-simple, hspec }:
+     mkDerivation {
+       pname = "freer-simple-catching";
+       version = "0.1.0.0";
+       sha256 = "140dmmcnpnvn3hhwjic6ja86qhw84k1547zfya7h1gm4sw36mq56";
+       libraryHaskellDepends = [ base freer-simple ];
+       testHaskellDepends = [ base freer-simple hspec ];
+       description = "Checked runtime exceptions with freer-simple";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
+  "freer-simple-http" = callPackage
+    ({ mkDerivation, aeson, base, bytestring, containers, freer-simple
+     , hspec, http-client, http-types
+     }:
+     mkDerivation {
+       pname = "freer-simple-http";
+       version = "0.1.0.0";
+       sha256 = "0wxqlwqgsphmzhpsbkdq9bl5vjmq598x1q20dd235bdxgggnxd57";
+       libraryHaskellDepends = [
+         aeson base bytestring containers freer-simple http-client
+         http-types
+       ];
+       testHaskellDepends = [
+         aeson base bytestring containers freer-simple hspec http-client
+         http-types
+       ];
+       description = "Make HTTP requests with freer-simple!";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
+  "freer-simple-profiling" = callPackage
+    ({ mkDerivation, base, containers, freer-simple, hspec, time }:
+     mkDerivation {
+       pname = "freer-simple-profiling";
+       version = "0.1.0.0";
+       sha256 = "1ll8r8z7khxlr2yix9c8m3bjdq3yncvrsg6pj03n68wsf26zgf17";
+       libraryHaskellDepends = [ base containers freer-simple time ];
+       testHaskellDepends = [ base containers freer-simple hspec time ];
+       description = "Automatic profling of freer-simple programs";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
+  "freer-simple-random" = callPackage
+    ({ mkDerivation, base, containers, freer-simple, hspec, random }:
+     mkDerivation {
+       pname = "freer-simple-random";
+       version = "0.1.0.0";
+       sha256 = "0bp0px1d7lsghaq7giaqm3xlhp0fkrf15dxpqzlglh0ysd2xg3x3";
+       libraryHaskellDepends = [ base containers freer-simple random ];
+       testHaskellDepends = [ base containers freer-simple hspec random ];
+       description = "Random number generators using freer-simple";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
+  "freer-simple-time" = callPackage
+    ({ mkDerivation, base, freer-simple, hspec, time }:
+     mkDerivation {
+       pname = "freer-simple-time";
+       version = "0.1.0.0";
+       sha256 = "08ph7nlj3f3iyvqljwn1hz4z8x0nzl19fsmb0rkk9sjbkk043ar8";
+       libraryHaskellDepends = [ base freer-simple time ];
+       testHaskellDepends = [ base freer-simple hspec time ];
+       description = "freer-simple interface to IO based time functions";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
   "freesect" = callPackage
     ({ mkDerivation, array, base, cpphs, directory, mtl, parallel
      , pretty, random, syb
@@ -83548,6 +83696,26 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "getopt-generics_0_13_0_3" = callPackage
+    ({ mkDerivation, base, base-compat, base-orphans, filepath
+     , generics-sop, hspec, QuickCheck, safe, silently, tagged
+     }:
+     mkDerivation {
+       pname = "getopt-generics";
+       version = "0.13.0.3";
+       sha256 = "1202xsfvygd06h1d70v73ldwj32qv6sqadk5zl2979dgjx4841db";
+       libraryHaskellDepends = [
+         base base-compat base-orphans generics-sop tagged
+       ];
+       testHaskellDepends = [
+         base base-compat base-orphans filepath generics-sop hspec
+         QuickCheck safe silently tagged
+       ];
+       description = "Create command line interfaces with ease";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "getopt-simple" = callPackage
     ({ mkDerivation, base, containers }:
      mkDerivation {
@@ -85546,18 +85714,44 @@ self: {
        license = stdenv.lib.licenses.lgpl21;
      }) {gtk3 = pkgs.gnome3.gtk;};
 
+  "gi-gtk_3_0_26" = callPackage
+    ({ mkDerivation, base, bytestring, Cabal, containers, gi-atk
+     , gi-cairo, gi-gdk, gi-gdkpixbuf, gi-gio, gi-glib, gi-gobject
+     , gi-pango, gtk3, haskell-gi, haskell-gi-base
+     , haskell-gi-overloading, text, transformers
+     }:
+     mkDerivation {
+       pname = "gi-gtk";
+       version = "3.0.26";
+       sha256 = "1b0sfjcjxm0kzqyhrvl4wbxqa7zdpwv13xzrpb1k1k9rijjf1anf";
+       setupHaskellDepends = [ base Cabal haskell-gi ];
+       libraryHaskellDepends = [
+         base bytestring containers gi-atk gi-cairo gi-gdk gi-gdkpixbuf
+         gi-gio gi-glib gi-gobject gi-pango haskell-gi haskell-gi-base
+         haskell-gi-overloading text transformers
+       ];
+       libraryPkgconfigDepends = [ gtk3 ];
+       doHaddock = false;
+       description = "Gtk bindings";
+       license = stdenv.lib.licenses.lgpl21;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {gtk3 = pkgs.gnome3.gtk;};
+
   "gi-gtk-declarative" = callPackage
-    ({ mkDerivation, base, gi-gobject, gi-gtk, haskell-gi
-     , haskell-gi-base, haskell-gi-overloading, mtl, text
-     , unordered-containers
+    ({ mkDerivation, base, criterion, gi-gdk, gi-glib, gi-gobject
+     , gi-gtk, haskell-gi, haskell-gi-base, haskell-gi-overloading, mtl
+     , random, text, unordered-containers, vector
      }:
      mkDerivation {
        pname = "gi-gtk-declarative";
-       version = "0.1.0";
-       sha256 = "1yqvqbhlgbpq5s77fvqi8f644i059gg64xdkgwr4ka6zdz4fhiaf";
+       version = "0.2.0";
+       sha256 = "0spp225x4acrm96gr0i1jqlhmdq52xqin6h0mma2gvjh025dywyh";
        libraryHaskellDepends = [
          base gi-gobject gi-gtk haskell-gi haskell-gi-base
-         haskell-gi-overloading mtl text unordered-containers
+         haskell-gi-overloading mtl text unordered-containers vector
+       ];
+       benchmarkHaskellDepends = [
+         base criterion gi-gdk gi-glib gi-gtk random text
        ];
        description = "Declarative GTK+ programming in Haskell";
        license = stdenv.lib.licenses.mpl20;
@@ -85570,14 +85764,14 @@ self: {
      }:
      mkDerivation {
        pname = "gi-gtk-declarative-app-simple";
-       version = "0.1.0";
-       sha256 = "157xhfixlf545qzk9v4sav6817fdznxk0kwiin59xn9d3ldp71ak";
+       version = "0.2.0";
+       sha256 = "19br3alfj0ggsbwp0640pdrjz1dm59g2wv8sb38jznsrni5fb8yx";
        libraryHaskellDepends = [
          async base gi-gdk gi-glib gi-gobject gi-gtk gi-gtk-declarative
          haskell-gi haskell-gi-base haskell-gi-overloading pipes
          pipes-concurrency text
        ];
-       description = "Declarative GTK+ programming in Haskell in the style of [Pux](https://github.com/alexmingoia/purescript-pux).";
+       description = "Declarative GTK+ programming in Haskell in the style of Pux";
        license = stdenv.lib.licenses.mpl20;
      }) {};
 
@@ -87900,20 +88094,20 @@ self: {
      }) {};
 
   "gloss-export" = callPackage
-    ({ mkDerivation, base, GLFW-b, gloss, gloss-rendering, GLUT
-     , JuicyPixels, OpenGLRaw, vector
+    ({ mkDerivation, base, directory, filepath, GLFW-b, gloss
+     , gloss-rendering, GLUT, JuicyPixels, OpenGLRaw, vector
      }:
      mkDerivation {
        pname = "gloss-export";
-       version = "0.1.0.0";
-       sha256 = "0m5k8zr90wqh6sjgn5c3mrpffwkq8g42qji8ss77l97a2hcv50dq";
+       version = "0.1.0.1";
+       sha256 = "0f81fncs7xirnwxkidbiikcxaj82svn2cgwdhgg588sk28rbd0vz";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
          base GLFW-b gloss-rendering GLUT JuicyPixels OpenGLRaw vector
        ];
        executableHaskellDepends = [ base gloss ];
-       testHaskellDepends = [ base ];
+       testHaskellDepends = [ base directory filepath gloss JuicyPixels ];
        description = "Export Gloss pictures to png, bmp, tga, tiff, gif and juicy-pixels-image";
        license = stdenv.lib.licenses.mit;
      }) {};
@@ -92248,6 +92442,22 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "gscholar-rss" = callPackage
+    ({ mkDerivation, base, feed, http-conduit, scalpel-core, text, uri
+     }:
+     mkDerivation {
+       pname = "gscholar-rss";
+       version = "0.1.0.0";
+       sha256 = "17ki6wvrjvxl77zjpkxjq8yr4ljdrwlszrzwdv3arlq2c0mgl7yy";
+       isLibrary = false;
+       isExecutable = true;
+       executableHaskellDepends = [
+         base feed http-conduit scalpel-core text uri
+       ];
+       description = "scrapes google scholar, provides RSS feed";
+       license = stdenv.lib.licenses.gpl3;
+     }) {};
+
   "gsl-random" = callPackage
     ({ mkDerivation, base, Cabal, vector }:
      mkDerivation {
@@ -100671,8 +100881,8 @@ self: {
      }:
      mkDerivation {
        pname = "haskoin-store";
-       version = "0.6.1";
-       sha256 = "0jgsf4f3qyq60dbyyni0d1cdphabf8ix4l0y1iiql5ii2fy50dw2";
+       version = "0.6.2";
+       sha256 = "0csb7rhcpc82xq5631i62rsr4s672b0jz8d2fmcga2j3a9di34xb";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -101249,8 +101459,8 @@ self: {
      }:
      mkDerivation {
        pname = "haskus-utils";
-       version = "1.1";
-       sha256 = "1grbj23545b7wxxyc4rra681k9c8xg36swlql3rgcr15m61fm647";
+       version = "1.3";
+       sha256 = "0gcwnhh3s3cmn7rwd31rs9rqmdpdhwk1la1pf56pcr10dy5iqbs4";
        libraryHaskellDepends = [
          base containers extra file-embed haskus-utils-data
          haskus-utils-types haskus-utils-variant list-t mtl
@@ -101285,10 +101495,8 @@ self: {
     ({ mkDerivation, base }:
      mkDerivation {
        pname = "haskus-utils-types";
-       version = "1.2";
-       sha256 = "0q7i2z1l55x9pgf9bd5xng0bdx4v74356gayhdxws1gfmghgf7f0";
-       revision = "1";
-       editedCabalFile = "07r524gxdr3alwyns96rv2rmha96s89l2216hzrbvw6c6pqg401a";
+       version = "1.3";
+       sha256 = "06zfc5ivj7zx1c6inc3xkw9b3p62b2x7dr24fp1s59c9yfrihg1a";
        libraryHaskellDepends = [ base ];
        description = "Haskus utility modules";
        license = stdenv.lib.licenses.bsd3;
@@ -101296,14 +101504,15 @@ self: {
 
   "haskus-utils-variant" = callPackage
     ({ mkDerivation, base, haskus-utils-data, haskus-utils-types, tasty
-     , tasty-quickcheck, template-haskell
+     , tasty-quickcheck, template-haskell, transformers
      }:
      mkDerivation {
        pname = "haskus-utils-variant";
-       version = "2.2";
-       sha256 = "1h3rpk04dkqppfbw7pilc4sw0pkdxxr70zggsfn63ay4zqk6s5r7";
+       version = "2.4";
+       sha256 = "13yqyz1jb4qkdzjxwkpc9s2636disxldja49wmah7h71kd2sqn9r";
        libraryHaskellDepends = [
          base haskus-utils-data haskus-utils-types template-haskell
+         transformers
        ];
        testHaskellDepends = [ base tasty tasty-quickcheck ];
        description = "Variant and EADT";
@@ -108518,8 +108727,8 @@ self: {
      }:
      mkDerivation {
        pname = "hoauth2";
-       version = "1.8.1";
-       sha256 = "1b2rjqd8q0ybx26pmmsb1am9v6pnbp0xb3fzqvivxppdr5z6kl29";
+       version = "1.8.2";
+       sha256 = "0bh6ngq9850bxl2m1qpvnanif5nz09k697rw3sk6djqkcw3lv305";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -112436,6 +112645,87 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "hschema" = callPackage
+    ({ mkDerivation, base, comonad, contravariant, free, hashable
+     , invariant, lens, mtl, natural-transformation, profunctors, text
+     , unordered-containers, vector
+     }:
+     mkDerivation {
+       pname = "hschema";
+       version = "0.0.1.0";
+       sha256 = "0dm16r432rpk9r1a7nlwwbqi2sy9yg2z9w76s7wy1k67pmx19fmz";
+       libraryHaskellDepends = [
+         base comonad contravariant free hashable invariant lens mtl
+         natural-transformation profunctors text unordered-containers vector
+       ];
+       description = "Describe schemas for your Haskell data types";
+       license = stdenv.lib.licenses.lgpl3;
+     }) {};
+
+  "hschema-aeson" = callPackage
+    ({ mkDerivation, aeson, base, bytestring, comonad, contravariant
+     , convertible, directory, free, hschema, hschema-prettyprinter
+     , hschema-quickcheck, hspec, lens, mtl, natural-transformation
+     , prettyprinter, prettyprinter-ansi-terminal, QuickCheck
+     , quickcheck-instances, scientific, text, time
+     , unordered-containers, vector
+     }:
+     mkDerivation {
+       pname = "hschema-aeson";
+       version = "0.0.1.0";
+       sha256 = "1kq50rqmlhbh2ssly32gv5r6d6z4ly63hkl4lhvq0a153i7w387z";
+       libraryHaskellDepends = [
+         aeson base comonad contravariant free hschema hschema-prettyprinter
+         hschema-quickcheck lens mtl natural-transformation prettyprinter
+         prettyprinter-ansi-terminal QuickCheck quickcheck-instances
+         scientific text time unordered-containers vector
+       ];
+       testHaskellDepends = [
+         aeson base bytestring comonad contravariant convertible directory
+         free hschema hschema-prettyprinter hschema-quickcheck hspec lens
+         mtl natural-transformation prettyprinter
+         prettyprinter-ansi-terminal QuickCheck quickcheck-instances
+         scientific text time unordered-containers vector
+       ];
+       description = "Describe schemas for your Haskell data types";
+       license = stdenv.lib.licenses.lgpl3;
+     }) {};
+
+  "hschema-prettyprinter" = callPackage
+    ({ mkDerivation, base, contravariant, free, hschema, lens, mtl
+     , natural-transformation, prettyprinter
+     , prettyprinter-ansi-terminal, text, unordered-containers, vector
+     }:
+     mkDerivation {
+       pname = "hschema-prettyprinter";
+       version = "0.0.1.0";
+       sha256 = "064czqn3h5ql4bknagj2qp1m3pr1fcngpjmmy34dhxp0pg5xgvsw";
+       libraryHaskellDepends = [
+         base contravariant free hschema lens mtl natural-transformation
+         prettyprinter prettyprinter-ansi-terminal text unordered-containers
+         vector
+       ];
+       description = "Describe schemas for your Haskell data types";
+       license = stdenv.lib.licenses.lgpl3;
+     }) {};
+
+  "hschema-quickcheck" = callPackage
+    ({ mkDerivation, base, free, hschema, lens, mtl
+     , natural-transformation, QuickCheck, quickcheck-instances, text
+     , unordered-containers, vector
+     }:
+     mkDerivation {
+       pname = "hschema-quickcheck";
+       version = "0.0.1.0";
+       sha256 = "13hkpcj1cc4qykm8xhkzix29gbil8vz10b3ndivbxq5nk53r11s6";
+       libraryHaskellDepends = [
+         base free hschema lens mtl natural-transformation QuickCheck
+         quickcheck-instances text unordered-containers vector
+       ];
+       description = "Describe schemas for your Haskell data types";
+       license = stdenv.lib.licenses.lgpl3;
+     }) {};
+
   "hsclock" = callPackage
     ({ mkDerivation, base, cairo, glib, gtk, old-time }:
      mkDerivation {
@@ -121161,6 +121451,18 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "impl" = callPackage
+    ({ mkDerivation, base, named, template-haskell }:
+     mkDerivation {
+       pname = "impl";
+       version = "0.1.0.0";
+       sha256 = "00l50mrl7g3jzixlj3z2kar61vzb152lnn485b7zdsz4vgqxs1sx";
+       libraryHaskellDepends = [ base named template-haskell ];
+       doHaddock = false;
+       description = "Framework for defaulting superclasses";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
   "implicit" = callPackage
     ({ mkDerivation, base, blaze-builder, blaze-markup, blaze-svg
      , bytestring, bytestring-builder, containers, criterion, deepseq
@@ -140745,6 +141047,28 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "massiv_0_2_3_0" = callPackage
+    ({ mkDerivation, base, bytestring, data-default, data-default-class
+     , deepseq, ghc-prim, hspec, primitive, QuickCheck, safe-exceptions
+     , vector
+     }:
+     mkDerivation {
+       pname = "massiv";
+       version = "0.2.3.0";
+       sha256 = "1wrfzlika7w82nxmmj192cbrhm769yhmichk1lpylldzvv9j0wl5";
+       libraryHaskellDepends = [
+         base bytestring data-default-class deepseq ghc-prim primitive
+         vector
+       ];
+       testHaskellDepends = [
+         base bytestring data-default deepseq hspec QuickCheck
+         safe-exceptions vector
+       ];
+       description = "Massiv (Массив) is an Array Library";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "massiv-io" = callPackage
     ({ mkDerivation, base, bytestring, data-default, deepseq, directory
      , filepath, JuicyPixels, massiv, netpbm, process, vector
@@ -143270,12 +143594,12 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
-  "microspec_0_2_0_1" = callPackage
+  "microspec_0_2_1_3" = callPackage
     ({ mkDerivation, base, QuickCheck, time }:
      mkDerivation {
        pname = "microspec";
-       version = "0.2.0.1";
-       sha256 = "1ygkxsj7rm42f245qip8893lm189immmd5ajimp5d1pkzfkw4dnp";
+       version = "0.2.1.3";
+       sha256 = "0615gdbsk7i3w71adjp69zabw4mli965wffm2h846hp6pjj31xcb";
        libraryHaskellDepends = [ base QuickCheck time ];
        description = "Tiny QuickCheck test library with minimal dependencies";
        license = stdenv.lib.licenses.bsd3;
@@ -143351,8 +143675,8 @@ self: {
     ({ mkDerivation, base, containers, safe, stm }:
      mkDerivation {
        pname = "midair";
-       version = "0.2.0.0";
-       sha256 = "1fdii0pj3f1bskj9bnphhy9gbp58cqjk0q3cmfj3ynkqz20j49ij";
+       version = "0.2.0.1";
+       sha256 = "1dkja5arps41wanhv1jnkf99xrc8f5aiimp27myd595lqqdr87s2";
        libraryHaskellDepends = [ base containers safe stm ];
        description = "Hot-swappable FRP";
        license = stdenv.lib.licenses.gpl3;
@@ -144450,20 +144774,22 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
-  "mmark-cli_0_0_4_0" = callPackage
-    ({ mkDerivation, aeson, base, bytestring, directory, gitrev, lucid
-     , megaparsec, mmark, mmark-ext, optparse-applicative, stache, text
+  "mmark-cli_0_0_5_0" = callPackage
+    ({ mkDerivation, aeson, base, bytestring, directory
+     , ghc-syntax-highlighter, gitrev, lucid, megaparsec, mmark
+     , mmark-ext, optparse-applicative, stache, text
      , unordered-containers
      }:
      mkDerivation {
        pname = "mmark-cli";
-       version = "0.0.4.0";
-       sha256 = "0vw1pq3iz4bbz5fgbzi8lvpscc58izh6y210jfi12h2jyzajyf5k";
+       version = "0.0.5.0";
+       sha256 = "15qrp2q1flx9csqvj8zx9w1jqg8pwfi0v7wpia7n7vg09jgydhby";
        isLibrary = false;
        isExecutable = true;
        executableHaskellDepends = [
-         aeson base bytestring directory gitrev lucid megaparsec mmark
-         mmark-ext optparse-applicative stache text unordered-containers
+         aeson base bytestring directory ghc-syntax-highlighter gitrev lucid
+         megaparsec mmark mmark-ext optparse-applicative stache text
+         unordered-containers
        ];
        description = "Command line interface to the MMark markdown processor";
        license = stdenv.lib.licenses.bsd3;
@@ -144493,6 +144819,27 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "mmark-ext_0_2_1_1" = callPackage
+    ({ mkDerivation, base, foldl, ghc-syntax-highlighter, hspec
+     , hspec-discover, lucid, microlens, mmark, modern-uri, skylighting
+     , text
+     }:
+     mkDerivation {
+       pname = "mmark-ext";
+       version = "0.2.1.1";
+       sha256 = "01av7d9n75mg9yzkxszrvbxjbsv4n0gsdmg3n2620zn40j5lwmcq";
+       enableSeparateDataOutput = true;
+       libraryHaskellDepends = [
+         base foldl ghc-syntax-highlighter lucid microlens mmark modern-uri
+         skylighting text
+       ];
+       testHaskellDepends = [ base hspec lucid mmark skylighting text ];
+       testToolDepends = [ hspec-discover ];
+       description = "Commonly useful extensions for the MMark markdown processor";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "mmorph" = callPackage
     ({ mkDerivation, base, mtl, transformers, transformers-compat }:
      mkDerivation {
@@ -148402,8 +148749,8 @@ self: {
     ({ mkDerivation, base, template-haskell }:
      mkDerivation {
        pname = "multirec";
-       version = "0.7.8";
-       sha256 = "0n5rsjrg8b98aim1wsv1s2i17299h8g4k2gb7mgn1swzldrigjhz";
+       version = "0.7.9";
+       sha256 = "0a6kc3kkg7hz5wigp28fhp01pryb8gaw03fjc35mm4i2jfcjrplz";
        libraryHaskellDepends = [ base template-haskell ];
        testHaskellDepends = [ base ];
        description = "Generic programming for families of recursive datatypes";
@@ -149959,6 +150306,8 @@ self: {
        pname = "named";
        version = "0.2.0.0";
        sha256 = "17ldvxypf099wj5phzh2aymzfwmyiyzhz24h1aj2s21nrys5n6n0";
+       revision = "1";
+       editedCabalFile = "0rnzxqlpxsfyvmc2i53iqspw03w2liflpy0zrc84pn6kw4v822j3";
        libraryHaskellDepends = [ base ];
        testHaskellDepends = [ base ];
        description = "Named parameters (keyword arguments) for Haskell";
@@ -152371,8 +152720,8 @@ self: {
     ({ mkDerivation, base, doctest, network-uri, template-haskell }:
      mkDerivation {
        pname = "network-uri-static";
-       version = "0.1.1.0";
-       sha256 = "1fjw3a9ypmqf7kl8s9mgwa9jlswz98igp830f1hsyc1hdh9xlrqw";
+       version = "0.1.2.0";
+       sha256 = "1r1blpz313v6qacvbns53c2i1zgvadvl0ibmp2s3bv1ymm4caj74";
        libraryHaskellDepends = [ base network-uri template-haskell ];
        testHaskellDepends = [ base doctest ];
        description = "A small utility to declare type-safe static URIs";
@@ -152748,8 +153097,8 @@ self: {
      }:
      mkDerivation {
        pname = "ngx-export";
-       version = "1.5.0";
-       sha256 = "1lw1hf2xy86n6c8426zdvk1qbm43gsk5zxjrbfqcy28qlnvwcdpa";
+       version = "1.6.0";
+       sha256 = "0svl195w8prf45g0pda1j6hngxpb18vdpc15cybxrzp2x689dxll";
        libraryHaskellDepends = [
          async base binary bytestring deepseq monad-loops template-haskell
          unix
@@ -152764,8 +153113,8 @@ self: {
      }:
      mkDerivation {
        pname = "ngx-export-tools";
-       version = "0.2.1.1";
-       sha256 = "0z406bmfk9b1b6knpxwzkwh8n2cpfwgxdh52vghpgjf69c0yrjq1";
+       version = "0.3.0.0";
+       sha256 = "0dnkw5vvvdkcqqga9i4pvclvr3bh6wywdg0r60l8vwdcpi820dkl";
        libraryHaskellDepends = [
          aeson base binary bytestring ngx-export safe template-haskell
        ];
@@ -153383,6 +153732,17 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "nominal" = callPackage
+    ({ mkDerivation, base, containers }:
+     mkDerivation {
+       pname = "nominal";
+       version = "0.2.0.0";
+       sha256 = "1wd2vd0qn8ln3a5r29gikdcr4c2c2rf43p6kq3wmqm8ww30djgca";
+       libraryHaskellDepends = [ base containers ];
+       description = "Binders and alpha-equivalence made easy";
+       license = stdenv.lib.licenses.gpl3;
+     }) {};
+
   "nomyx-api" = callPackage
     ({ mkDerivation, aeson, base, bytestring, containers, either
      , hslogger, lens, mtl, network-uri, nomyx-core, nomyx-language
@@ -153634,8 +153994,8 @@ self: {
     ({ mkDerivation, base, containers, semigroupoids }:
      mkDerivation {
        pname = "nonemptymap";
-       version = "0.0.4.0";
-       sha256 = "0rkdhbg0bps8ws20xspw98fkmbcgzfir9kk5pxwir8x6pwwbfd8h";
+       version = "0.0.6.0";
+       sha256 = "1pzs51kmsyarv62qqbskhw2xlkjp74bwcgs9a8ri1jk96m64rg94";
        libraryHaskellDepends = [ base containers semigroupoids ];
        description = "A NonEmptyMap Implementation";
        license = stdenv.lib.licenses.bsd3;
@@ -155622,6 +155982,22 @@ self: {
        license = stdenv.lib.licenses.gpl3;
      }) {};
 
+  "once_0_3" = callPackage
+    ({ mkDerivation, base, containers, hashable, template-haskell
+     , unordered-containers
+     }:
+     mkDerivation {
+       pname = "once";
+       version = "0.3";
+       sha256 = "1i5yf5d6c33arbrvvyk2bcp9cz8aj62zhd6sgxqz684baidn5rbc";
+       libraryHaskellDepends = [
+         base containers hashable template-haskell unordered-containers
+       ];
+       description = "memoization for IO actions and functions";
+       license = stdenv.lib.licenses.gpl3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "one-line-aeson-text" = callPackage
     ({ mkDerivation, aeson, base, doctest, text, unordered-containers
      }:
@@ -158293,6 +158669,41 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "pandoc-citeproc_0_14_8_1" = callPackage
+    ({ mkDerivation, aeson, aeson-pretty, attoparsec, base, bytestring
+     , Cabal, containers, data-default, directory, filepath, hs-bibutils
+     , mtl, old-locale, pandoc, pandoc-types, parsec, process, rfc5051
+     , setenv, split, syb, tagsoup, temporary, text, time
+     , unordered-containers, vector, xml-conduit, yaml
+     }:
+     mkDerivation {
+       pname = "pandoc-citeproc";
+       version = "0.14.8.1";
+       sha256 = "04cdx0b9k3xk2ss97vws21pydxcwxffsgh7xrqrnwwc3v7jn80fz";
+       isLibrary = true;
+       isExecutable = true;
+       enableSeparateDataOutput = true;
+       setupHaskellDepends = [ base Cabal ];
+       libraryHaskellDepends = [
+         aeson base bytestring containers data-default directory filepath
+         hs-bibutils mtl old-locale pandoc pandoc-types parsec rfc5051
+         setenv split syb tagsoup text time unordered-containers vector
+         xml-conduit yaml
+       ];
+       executableHaskellDepends = [
+         aeson aeson-pretty attoparsec base bytestring filepath pandoc
+         pandoc-types syb text yaml
+       ];
+       testHaskellDepends = [
+         aeson base bytestring containers directory filepath mtl pandoc
+         pandoc-types process temporary text yaml
+       ];
+       doCheck = false;
+       description = "Supports using pandoc with citeproc";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "pandoc-citeproc-preamble" = callPackage
     ({ mkDerivation, base, directory, filepath, pandoc-types, process
      }:
@@ -163595,8 +164006,8 @@ self: {
      }:
      mkDerivation {
        pname = "pinch";
-       version = "0.3.3.0";
-       sha256 = "0bhds7k9bsma1bvihvz6qf832gi2krak3yd8lnddcv87hnjsr4hq";
+       version = "0.3.4.0";
+       sha256 = "10rmk6f9cb2l7dyybwpbin0i5dqdg59d17m627kj9abyrlhcyf8a";
        libraryHaskellDepends = [
          array base bytestring containers deepseq ghc-prim hashable
          semigroups text unordered-containers vector
@@ -165512,6 +165923,23 @@ self: {
        license = stdenv.lib.licenses.mit;
      }) {};
 
+  "plotlyhs_0_2_1" = callPackage
+    ({ mkDerivation, aeson, base, blaze-html, blaze-markup, bytestring
+     , lucid, microlens, microlens-th, text, time
+     }:
+     mkDerivation {
+       pname = "plotlyhs";
+       version = "0.2.1";
+       sha256 = "1d7cqy22myp6r0x0b00amn64fra0lklb9jy2hd8ic9lxg0nd8pn9";
+       libraryHaskellDepends = [
+         aeson base blaze-html blaze-markup bytestring lucid microlens
+         microlens-th text time
+       ];
+       description = "Haskell bindings to Plotly.js";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "ploton" = callPackage
     ({ mkDerivation, base, hspec, optparse-applicative, process, split
      , transformers
@@ -166967,18 +167395,18 @@ self: {
      }) {};
 
   "postgres-websockets" = callPackage
-    ({ mkDerivation, aeson, ansi-wl-pprint, base, base64-bytestring
-     , bytestring, configurator, containers, contravariant, either
-     , hasql, hasql-pool, heredoc, hspec, hspec-wai, hspec-wai-json
-     , http-types, jose, jwt, lens, lens-aeson, optparse-applicative
-     , postgresql-libpq, protolude, retry, stm, stm-containers
-     , stringsearch, text, time, transformers, unordered-containers, wai
-     , wai-app-static, wai-extra, wai-websockets, warp, websockets
+    ({ mkDerivation, aeson, base, base64-bytestring, bytestring
+     , containers, contravariant, either, envparse, hasql, hasql-pool
+     , hspec, hspec-wai, hspec-wai-json, http-types, jose, jwt, lens
+     , lens-aeson, postgresql-libpq, protolude, retry, stm
+     , stm-containers, stringsearch, text, time, transformers
+     , unordered-containers, wai, wai-app-static, wai-extra
+     , wai-websockets, warp, websockets
      }:
      mkDerivation {
        pname = "postgres-websockets";
-       version = "0.4.2.1";
-       sha256 = "0jh4ms9lz456as24v9d4vqj2b52i9gw7svk5lzvb65nhfdpb4kfp";
+       version = "0.5.0.1";
+       sha256 = "0afhrzhixy0f31050jb04w8np6935wcl3j7ckbk0dm23mqz2z3zy";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -166988,9 +167416,8 @@ self: {
          unordered-containers wai wai-websockets websockets
        ];
        executableHaskellDepends = [
-         ansi-wl-pprint base base64-bytestring bytestring configurator hasql
-         hasql-pool heredoc optparse-applicative protolude text time
-         transformers wai wai-app-static wai-extra warp
+         base base64-bytestring bytestring envparse hasql hasql-pool
+         protolude text time transformers wai wai-app-static wai-extra warp
        ];
        testHaskellDepends = [
          aeson base containers hasql hasql-pool hspec hspec-wai
@@ -170574,6 +171001,19 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {inherit (pkgs) libpulseaudio;};
 
+  "proteome" = callPackage
+    ({ mkDerivation, base, nvim-hs }:
+     mkDerivation {
+       pname = "proteome";
+       version = "0.1.0.0";
+       sha256 = "13c4hrgc1vxvwmzw49djvp22y80z2cndqbqcd4fy4rm6hd6zbs81";
+       isLibrary = false;
+       isExecutable = true;
+       executableHaskellDepends = [ base nvim-hs ];
+       description = "neovim project manager";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
   "proto-lens_0_2_2_0" = callPackage
     ({ mkDerivation, attoparsec, base, bytestring, containers
      , data-default-class, lens-family, parsec, pretty, text
@@ -188842,6 +189282,8 @@ self: {
        pname = "servant-streaming";
        version = "0.3.0.0";
        sha256 = "0k2sgh7qhp54050k6xlz4zi5jf29xnar2iv02f4rg1k5fxjlh3cq";
+       revision = "1";
+       editedCabalFile = "1a9lg7cxbkj658hc76r5yk104q0hm3q9mkjzk17dwkwlnvdfq6m2";
        libraryHaskellDepends = [ base http-types servant ];
        testHaskellDepends = [ base hspec http-types QuickCheck servant ];
        description = "Servant combinators for the 'streaming' package";
@@ -188858,6 +189300,8 @@ self: {
        pname = "servant-streaming-client";
        version = "0.3.0.0";
        sha256 = "1h3haws61m064zziyzn03n0450swffmr46gsv9k88lrpz8lv5qj2";
+       revision = "1";
+       editedCabalFile = "07xkgnhi8aspnqms5gx67ssw5m595gda8yqypdg2q59wwc6ib68d";
        libraryHaskellDepends = [
          base bytestring http-media http-types resourcet servant
          servant-client-core servant-streaming streaming
@@ -188880,6 +189324,8 @@ self: {
        pname = "servant-streaming-docs";
        version = "0.3.0.0";
        sha256 = "0jy0na8cavym2vsy1a059n0yjzfb5a0xylyzxpz0i5apafv1xvlz";
+       revision = "1";
+       editedCabalFile = "02majkszg6d340mq07b9xyfd200xqpq9znl2j9dxqj7d9bqkrdrz";
        libraryHaskellDepends = [
          base lens servant servant-docs servant-streaming
        ];
@@ -188897,6 +189343,8 @@ self: {
        pname = "servant-streaming-server";
        version = "0.3.0.0";
        sha256 = "0lsh3x6hkbk7p095pkp7ld0m54xlkw0101x6nrxhjvhmw13aiq66";
+       revision = "1";
+       editedCabalFile = "1xfx22a83xwq2bzv7gm3z9drd5hiq6wz7yyvfpjz1c2dcicwflvm";
        libraryHaskellDepends = [
          base bytestring http-media http-types resourcet servant
          servant-server servant-streaming streaming streaming-wai wai
@@ -190747,8 +191195,8 @@ self: {
     ({ mkDerivation, base, bytestring, unix }:
      mkDerivation {
        pname = "shared-memory";
-       version = "0.1.0.0";
-       sha256 = "15h4j81q2v97dx61pnpaqs99z4vvlw7xl1dxbh878imxj8zn4z84";
+       version = "0.2.0.0";
+       sha256 = "1g1s08zjpj9xaaff3qg29k6fhnpiig9fqv9i7879yhllh50kjrr6";
        libraryHaskellDepends = [ base unix ];
        testHaskellDepends = [ base bytestring unix ];
        description = "POSIX shared memory";
@@ -200022,6 +200470,8 @@ self: {
        pname = "stemmer-german";
        version = "0.1.1.1";
        sha256 = "037dw03zb4xdfbzp8js04ymrxii7rsin7pwiansa9khb29w2jqsn";
+       revision = "1";
+       editedCabalFile = "0pvghdxgd56yjm33lrzk6343lklnfdw77g30vhbfddwwdx1ifx2v";
        libraryHaskellDepends = [ base text ];
        description = "Extract the stem of a German inflected word form";
        license = stdenv.lib.licenses.mit;
@@ -202350,8 +202800,8 @@ self: {
      }:
      mkDerivation {
        pname = "structured-cli";
-       version = "2.2.1.0";
-       sha256 = "1b75wnmprbb4sfnwyn5arc205ad5rlyz4hv63ai35i9iryax875s";
+       version = "2.3.0.0";
+       sha256 = "1qpyh9cjdxd6v5xdzp44qlpn0mskqc9qzs78rbyr1q1ylmlja6a7";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -203276,6 +203726,20 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "supervisors" = callPackage
+    ({ mkDerivation, async, base, containers, hspec, stm, unliftio }:
+     mkDerivation {
+       pname = "supervisors";
+       version = "0.1.0.0";
+       sha256 = "1sxralp0hcz2zn5byn67xq612nzmpm890gnjs827sidvr7r7h31j";
+       revision = "1";
+       editedCabalFile = "186a5vawnknixf4psp06cjbyby5qp4i0c8bpvisqi3pq3kag7x76";
+       libraryHaskellDepends = [ async base containers stm unliftio ];
+       testHaskellDepends = [ base hspec ];
+       description = "Monitor groups of threads with non-hierarchical lifetimes";
+       license = stdenv.lib.licenses.mit;
+     }) {};
+
   "supplemented" = callPackage
     ({ mkDerivation, base, base-prelude, QuickCheck
      , quickcheck-instances, rebase, tasty, tasty-hunit
@@ -213041,30 +213505,32 @@ self: {
        license = stdenv.lib.licenses.mpl20;
      }) {};
 
-  "tomland_0_4_0" = callPackage
-    ({ mkDerivation, base, hashable, hedgehog, hspec-megaparsec
-     , megaparsec, mtl, parser-combinators, tasty, tasty-discover
-     , tasty-hedgehog, tasty-hspec, text, time, transformers
-     , unordered-containers
+  "tomland_0_5_0" = callPackage
+    ({ mkDerivation, aeson, base, bytestring, containers, deepseq
+     , gauge, hashable, hedgehog, hspec-megaparsec, htoml
+     , htoml-megaparsec, megaparsec, mtl, parsec, parser-combinators
+     , tasty, tasty-discover, tasty-hedgehog, tasty-hspec, tasty-silver
+     , text, time, transformers, unordered-containers
      }:
      mkDerivation {
        pname = "tomland";
-       version = "0.4.0";
-       sha256 = "1rkdlq6js5ia807wh9hga6y9r92bxj8j5g7nynba1ilc3x70znfr";
-       revision = "1";
-       editedCabalFile = "1d02r17m15s5z4xqyy05s515lbsqxc3kcipk25xvn24inz42qg4r";
+       version = "0.5.0";
+       sha256 = "001gw3yj0ibg3dm4q5wz8akjpcdx6zj3jza1y6gq7m5h13fzrvgf";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
-         base hashable megaparsec mtl parser-combinators text time
-         transformers unordered-containers
+         base bytestring containers deepseq hashable megaparsec mtl
+         parser-combinators text time transformers unordered-containers
        ];
        executableHaskellDepends = [ base text time unordered-containers ];
        testHaskellDepends = [
          base hedgehog hspec-megaparsec megaparsec tasty tasty-hedgehog
-         tasty-hspec text time unordered-containers
+         tasty-hspec tasty-silver text time unordered-containers
        ];
        testToolDepends = [ tasty-discover ];
+       benchmarkHaskellDepends = [
+         aeson base deepseq gauge htoml htoml-megaparsec parsec text time
+       ];
        description = "Bidirectional TOML parser";
        license = stdenv.lib.licenses.mpl20;
        hydraPlatforms = stdenv.lib.platforms.none;
@@ -213959,8 +214425,8 @@ self: {
        pname = "transformers-lift";
        version = "0.2.0.1";
        sha256 = "17g03r5hpnygx0c9ybr9za6208ay0cjvz47rkyplv1r9zcivzn0b";
-       revision = "1";
-       editedCabalFile = "1dy9vg0drkm9ria80hlfx6v72ji2fwmv3ik7lryv7i7hk0bdzk8l";
+       revision = "2";
+       editedCabalFile = "16gpca2wfa7w2b5kzfvqsjjyd61pkv0wyi2mk5b34367p4chnsc5";
        libraryHaskellDepends = [
          base transformers writer-cps-transformers
        ];
@@ -214648,6 +215114,26 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "triplesec_0_2_2_0" = callPackage
+    ({ mkDerivation, base, bytestring, cryptonite, doctest, memory, mtl
+     , QuickCheck, tasty, tasty-hunit, tasty-quickcheck, transformers
+     }:
+     mkDerivation {
+       pname = "triplesec";
+       version = "0.2.2.0";
+       sha256 = "1gxks45hjr3a1lnr2v75cl0iwsmlzaq3yzd3p9s0pn5227f34zh7";
+       libraryHaskellDepends = [
+         base cryptonite memory mtl transformers
+       ];
+       testHaskellDepends = [
+         base bytestring doctest memory QuickCheck tasty tasty-hunit
+         tasty-quickcheck
+       ];
+       description = "TripleSec is a simple, triple-paranoid, symmetric encryption library";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "trivia" = callPackage
     ({ mkDerivation, base, comonad, distributive }:
      mkDerivation {
@@ -216458,8 +216944,8 @@ self: {
      }:
      mkDerivation {
        pname = "type-map";
-       version = "0.1.2.0";
-       sha256 = "0cm2b4xkassjh71ndc5nddpmqyr5bcf3fqxs74wzd11dycmfqfaa";
+       version = "0.1.3.0";
+       sha256 = "146kc36z6fljcgmgl9vii1pmf3hs80v2vz21r84p823znrqjs8gc";
        libraryHaskellDepends = [ base containers ghc-prim vector ];
        testHaskellDepends = [
          base HUnit test-framework test-framework-hunit
@@ -222796,6 +223282,26 @@ self: {
        license = "GPL";
      }) {};
 
+  "vivid_0_4_2_3" = callPackage
+    ({ mkDerivation, base, binary, bytestring, containers, directory
+     , filepath, hashable, MonadRandom, mtl, network, process, random
+     , random-shuffle, split, stm, time, transformers, utf8-string
+     , vivid-osc, vivid-supercollider
+     }:
+     mkDerivation {
+       pname = "vivid";
+       version = "0.4.2.3";
+       sha256 = "0awm9cnjgfqx1qf6jsnwmf0kxqxwny82q1ddqna8ilqcdrbsxh0i";
+       libraryHaskellDepends = [
+         base binary bytestring containers directory filepath hashable
+         MonadRandom mtl network process random random-shuffle split stm
+         time transformers utf8-string vivid-osc vivid-supercollider
+       ];
+       description = "Sound synthesis with SuperCollider";
+       license = "GPL";
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "vivid-osc" = callPackage
     ({ mkDerivation, base, binary, bytestring, cereal, microspec, time
      }:
@@ -222809,14 +223315,13 @@ self: {
        license = "GPL";
      }) {};
 
-  "vivid-osc_0_4_0_0" = callPackage
-    ({ mkDerivation, base, binary, bytestring, cereal, microspec, time
-     }:
+  "vivid-osc_0_5_0_0" = callPackage
+    ({ mkDerivation, base, bytestring, cereal, microspec, time }:
      mkDerivation {
        pname = "vivid-osc";
-       version = "0.4.0.0";
-       sha256 = "10wbl11xwkahjsnvy14ysvkbylh615x7i8v4hwrji81rfy2bs29n";
-       libraryHaskellDepends = [ base binary bytestring cereal time ];
+       version = "0.5.0.0";
+       sha256 = "041m4k1aqkw35fp7l03i3ba1jyppr8lia2v2zyq7v8yzby8ngys6";
+       libraryHaskellDepends = [ base bytestring cereal time ];
        testHaskellDepends = [ base bytestring cereal microspec time ];
        description = "Open Sound Control encode/decode";
        license = "GPL";
@@ -222842,6 +223347,26 @@ self: {
        license = "GPL";
      }) {};
 
+  "vivid-supercollider_0_4_1_1" = callPackage
+    ({ mkDerivation, base, binary, bytestring, cereal, microspec
+     , QuickCheck, split, utf8-string, vivid-osc
+     }:
+     mkDerivation {
+       pname = "vivid-supercollider";
+       version = "0.4.1.1";
+       sha256 = "1qf4hnslcmqkahxs5d55iljiybn46is41a5kikjd2vnbns4va0fb";
+       libraryHaskellDepends = [
+         base binary bytestring cereal split utf8-string vivid-osc
+       ];
+       testHaskellDepends = [
+         base binary bytestring cereal microspec QuickCheck utf8-string
+         vivid-osc
+       ];
+       description = "Implementation of SuperCollider server specifications";
+       license = "GPL";
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "vk-aws-route53" = callPackage
     ({ mkDerivation, aws, base, bytestring, containers, http-conduit
      , http-types, old-locale, resourcet, text, time, xml-conduit
@@ -223205,8 +223730,8 @@ self: {
      }:
      mkDerivation {
        pname = "waargonaut";
-       version = "0.2.0.0";
-       sha256 = "1qk4wg2jqzylaqq0yjq9byj3k5vj23jqvdshvyj7r9fl0f3hynni";
+       version = "0.2.0.2";
+       sha256 = "0sl4rhkrykd9hn1dpzzsf8hcg5jhx4f7wwysmam8apkkj0hafp17";
        setupHaskellDepends = [ base Cabal cabal-doctest ];
        libraryHaskellDepends = [
          base bifunctors bytestring containers contravariant digit
@@ -225754,7 +226279,7 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
-  "web3_0_8_1_0" = callPackage
+  "web3_0_8_2_0" = callPackage
     ({ mkDerivation, aeson, async, base, basement, bytestring, cereal
      , cryptonite, data-default, exceptions, generics-sop, hspec
      , hspec-contrib, hspec-discover, hspec-expectations, http-client
@@ -225765,8 +226290,8 @@ self: {
      }:
      mkDerivation {
        pname = "web3";
-       version = "0.8.1.0";
-       sha256 = "0aliq3iblnlz7waswzprb8z28v82sjq8qpc2bbcyknmpp52p2r26";
+       version = "0.8.2.0";
+       sha256 = "0gfz4011yflpjhg2397wq5761hq4r0g0yrkqljp1xsikq2jab72h";
        libraryHaskellDepends = [
          aeson async base basement bytestring cereal cryptonite data-default
          exceptions generics-sop http-client http-client-tls machines memory
@@ -230404,8 +230929,8 @@ self: {
      }:
      mkDerivation {
        pname = "xmonad-extras";
-       version = "0.14";
-       sha256 = "1p1xc8qcrrdv3hhvlmg6l6mcywz7q2i81y6frnf3iz00n01b3d9f";
+       version = "0.15";
+       sha256 = "0yi6p4s9vl92bnr0sbcvm80x37n4fyglm4x3lrc9l8mapbpxjr02";
        configureFlags = [
          "-f-with_hlist" "-fwith_parsec" "-fwith_split"
        ];
@@ -235647,8 +236172,8 @@ self: {
     ({ mkDerivation, base, multirec }:
      mkDerivation {
        pname = "zipper";
-       version = "0.4.2";
-       sha256 = "1r8092amq5w9gl5szycl1r7wx87xnmkcapdzcwfa4c3pvxrhjy44";
+       version = "0.4.3";
+       sha256 = "1p8yn91snyv5p6bmll7d0gm0zbrhp99fl4kziq0vkbchlpcdjapf";
        libraryHaskellDepends = [ base multirec ];
        description = "Generic zipper for families of recursive datatypes";
        license = stdenv.lib.licenses.bsd3;

From 1b35b1c73a47280cffa1ab256ababdbe5b021eaa Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Mon, 12 Nov 2018 16:23:47 +0100
Subject: [PATCH 1074/1129] all-cabal-hashes: update to Hackage at
 2018-11-12T01:24:24Z

---
 pkgs/data/misc/hackage/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/data/misc/hackage/default.nix b/pkgs/data/misc/hackage/default.nix
index 5fac16067882..17f51e0d3036 100644
--- a/pkgs/data/misc/hackage/default.nix
+++ b/pkgs/data/misc/hackage/default.nix
@@ -1,6 +1,6 @@
 { fetchurl }:
 
 fetchurl {
-  url = "https://github.com/commercialhaskell/all-cabal-hashes/archive/98ec0eee2ddef5d4a00e2ac4a95e8add46d23b69.tar.gz";
-  sha256 = "0svcaaflqi5c815z3yrh61bjny1jnwp42sylmsnwryjldqvizc1a";
+  url = "https://github.com/commercialhaskell/all-cabal-hashes/archive/1fba236a8a8f685aaf55029d20ab24d7e4cbc5ba.tar.gz";
+  sha256 = "0yy6ass2c0vn81pcvb0ksc1qh3hlw2q97937vp73jawghgwsy9qv";
 }

From 27a5427526b5544496535703ce78c7c1da1eb153 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?L=C3=A9o=20Gaspard?= <leo@gaspard.io>
Date: Tue, 13 Nov 2018 00:40:07 +0900
Subject: [PATCH 1075/1129] nixos-build-vms: fix syntax error

Introduced by https://github.com/NixOS/nixpkgs/commit/6c68fbd4e1f8beac39cb1f499ff90c78256262d6
---
 nixos/modules/installer/tools/nixos-build-vms/build-vms.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/nixos/modules/installer/tools/nixos-build-vms/build-vms.nix b/nixos/modules/installer/tools/nixos-build-vms/build-vms.nix
index 4d6da849f237..2625f7661b78 100644
--- a/nixos/modules/installer/tools/nixos-build-vms/build-vms.nix
+++ b/nixos/modules/installer/tools/nixos-build-vms/build-vms.nix
@@ -7,7 +7,7 @@ let nodes = import networkExpr; in
 
 with import ../../../../lib/testing.nix {
   inherit system;
-  pkgs = import ../.. { inherit system config; }
+  pkgs = import ../.. { inherit system config; };
 };
 
 (makeTest { inherit nodes; testScript = ""; }).driver

From 7452a05e4d10b1990e63a9b3181add983e722e88 Mon Sep 17 00:00:00 2001
From: jD91mZM2 <me@krake.one>
Date: Mon, 12 Nov 2018 16:49:38 +0100
Subject: [PATCH 1076/1129] cargo-tree: 0.21.0 -> 0.22.0

---
 pkgs/tools/package-management/cargo-tree/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/tools/package-management/cargo-tree/default.nix b/pkgs/tools/package-management/cargo-tree/default.nix
index dd7d88ff848c..e509ab2f59bb 100644
--- a/pkgs/tools/package-management/cargo-tree/default.nix
+++ b/pkgs/tools/package-management/cargo-tree/default.nix
@@ -1,17 +1,17 @@
 { stdenv, lib, rustPlatform, fetchFromGitHub, pkgconfig, cmake, curl, libiconv, darwin }:
 rustPlatform.buildRustPackage rec {
   name = "cargo-tree-${version}";
-  version = "0.21.0";
+  version = "0.22.0";
 
   src = fetchFromGitHub {
     owner = "sfackler";
     repo = "cargo-tree";
     rev = "v${version}";
 
-    sha256 = "0vr1mv8ns67kslxgwkvic8w86fvmqasxs6yd4yn21j49zg23866k";
+    sha256 = "1knxykw1pbqxs4inijd3y797kf1zp4ansmnbwfqxyjlkgss0spdq";
   };
 
-  cargoSha256 = "0924bpcwz15zlp4vjaqap05s4nynw9mqz0np1kph3vx7aj9rsaw6";
+  cargoSha256 = "0w1psr7j5r8ng3njkjiva738czlhnf9drprisbc8szkfhzc3rgaw";
 
   nativeBuildInputs = [ pkgconfig cmake ];
   buildInputs = [ curl ] ++ lib.optionals stdenv.isDarwin [ libiconv darwin.apple_sdk.frameworks.Security ];

From b4d9f6ddca2597af0323f4546b4ae466e0280243 Mon Sep 17 00:00:00 2001
From: Clemens Fruhwirth <clemens@endorphin.org>
Date: Wed, 31 Oct 2018 13:16:05 +0100
Subject: [PATCH 1077/1129] androidsdk: Re-add emulator that was broken out of
 the sdk-tools package.

---
 .../mobile/androidenv/androidsdk.nix          | 19 ++++++++++++++++++-
 1 file changed, 18 insertions(+), 1 deletion(-)

diff --git a/pkgs/development/mobile/androidenv/androidsdk.nix b/pkgs/development/mobile/androidenv/androidsdk.nix
index 3c2e6c530d22..26750aed6cfc 100644
--- a/pkgs/development/mobile/androidenv/androidsdk.nix
+++ b/pkgs/development/mobile/androidenv/androidsdk.nix
@@ -41,10 +41,16 @@ stdenv.mkDerivation rec {
     }
     else throw "platform not ${stdenv.hostPlatform.system} supported!";
 
+  emulator = fetchurl {
+     url = "https://dl.google.com/android/repository/emulator-linux-4969155.zip";
+     sha256 = "0iw0j6j3w9zpfalsa7xq2czz4vzgq96zk2zddjhanwwx4p8fhrfd";
+  };
+
   buildCommand = ''
     mkdir -p $out/libexec
     cd $out/libexec
     unpackFile $src
+    unpackFile $emulator
     cd tools
 
     for f in monitor bin/monkeyrunner bin/uiautomatorviewer
@@ -76,13 +82,16 @@ stdenv.mkDerivation rec {
       # The emulators need additional libraries, which are dynamically loaded => let's wrap them
 
       ${stdenv.lib.optionalString (stdenv.hostPlatform.system == "x86_64-linux") ''
-        for i in emulator emulator-check
+        cd ..
+        for i in emulator/emulator* emulator/qemu/linux-x86_64/qemu-system-*
         do
+            patchelf --set-interpreter ${stdenv.cc.libc.out}/lib/ld-linux-x86-64.so.2 $i
             wrapProgram `pwd`/$i \
               --prefix PATH : ${stdenv.lib.makeBinPath [ file glxinfo ]} \
               --suffix LD_LIBRARY_PATH : `pwd`/lib:${makeLibraryPath [ stdenv.cc.cc libX11 libxcb libXau libXdmcp libXext libGLU_combined alsaLib zlib libpulseaudio dbus.lib ]} \
               --suffix QT_XKB_CONFIG_ROOT : ${xkeyboardconfig}/share/X11/xkb
         done
+        cd tools
       ''}
     ''}
 
@@ -263,6 +272,14 @@ stdenv.mkDerivation rec {
         fi
     done
 
+    for i in $out/libexec/emulator/*
+    do
+        if [ ! -d $i ] && [ -x $i ]
+        then
+            ln -sf $i $out/bin/$(basename $i)
+        fi
+    done
+
     wrapProgram $out/bin/sdkmanager \
       --set JAVA_HOME ${jdk}
 

From 28e08aa254bdf1393a924955f6d788296ef8b2a8 Mon Sep 17 00:00:00 2001
From: Antoine Eiche <lewo@abesis.fr>
Date: Sat, 29 Sep 2018 09:21:09 +0200
Subject: [PATCH 1078/1129] gremlin-console: init at 3.3.4

---
 .../misc/gremlin-console/default.nix          | 29 +++++++++++++++++++
 pkgs/top-level/all-packages.nix               |  2 ++
 2 files changed, 31 insertions(+)
 create mode 100644 pkgs/applications/misc/gremlin-console/default.nix

diff --git a/pkgs/applications/misc/gremlin-console/default.nix b/pkgs/applications/misc/gremlin-console/default.nix
new file mode 100644
index 000000000000..a35079e91517
--- /dev/null
+++ b/pkgs/applications/misc/gremlin-console/default.nix
@@ -0,0 +1,29 @@
+{ pkgs, fetchzip, stdenv, makeWrapper, openjdk }:
+
+stdenv.mkDerivation rec {
+  name = "gremlin-console-${version}";
+  version = "3.3.4";
+  src = fetchzip {
+    url = "http://www-eu.apache.org/dist/tinkerpop/${version}/apache-tinkerpop-gremlin-console-${version}-bin.zip";
+    sha256 = "14xr0yqklmm4jvj1hnkj89lj83zzs2l1375ni0jbf12gy31jlb2w";
+  };
+
+  buildInputs = [ makeWrapper ];
+
+  installPhase = ''
+    mkdir -p $out/opt
+    cp -r ext lib $out/opt/
+    install -D bin/gremlin.sh $out/opt/bin/gremlin-console
+    makeWrapper $out/opt/bin/gremlin-console $out/bin/gremlin-console \
+      --prefix PATH ":" "${openjdk}/bin/" \
+      --set CLASSPATH "$out/opt/lib/"
+  '';
+
+  meta = with stdenv.lib; {
+    homepage = https://tinkerpop.apache.org/;
+    description = "Console of the Apache TinkerPop graph computing framework";
+    license = licenses.asl20;
+    maintainers = [ maintainers.lewo ];
+    platforms = platforms.all;
+  };
+}
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index 6e60dbf8837a..ae6be04dfc11 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -726,6 +726,8 @@ with pkgs;
    SDL = SDL_sixel;
   };
 
+  gremlin-console = callPackage ../applications/misc/gremlin-console { };
+
   gcsfuse = callPackage ../tools/filesystems/gcsfuse { };
 
   glyr = callPackage ../tools/audio/glyr { };

From 1ccea556a1b8a7154fcba0c5716484fb3fba5aa7 Mon Sep 17 00:00:00 2001
From: Vincent Demeester <vincent@sbr.pm>
Date: Thu, 1 Nov 2018 20:51:22 +0100
Subject: [PATCH 1079/1129] openshift: 3.10 -> 3.11

Using go 1.10 instead of 1.9

Signed-off-by: Vincent Demeester <vincent@sbr.pm>
---
 .../networking/cluster/openshift/default.nix   | 18 +++++++++---------
 1 file changed, 9 insertions(+), 9 deletions(-)

diff --git a/pkgs/applications/networking/cluster/openshift/default.nix b/pkgs/applications/networking/cluster/openshift/default.nix
index 0f137a872da6..9640df6acfec 100644
--- a/pkgs/applications/networking/cluster/openshift/default.nix
+++ b/pkgs/applications/networking/cluster/openshift/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, lib, fetchFromGitHub, removeReferencesTo, which, go_1_9, go-bindata, makeWrapper, rsync, utillinux
+{ stdenv, lib, fetchFromGitHub, removeReferencesTo, which, go_1_10, go-bindata, makeWrapper, rsync, utillinux
 , coreutils, kerberos, clang
 , components ? [
   "cmd/oc"
@@ -9,15 +9,15 @@
 with lib;
 
 let
-  version = "3.10.0";
+  version = "3.11.0";
   ver = stdenv.lib.elemAt (stdenv.lib.splitString "." version);
   versionMajor = ver 0;
   versionMinor = ver 1;
   versionPatch = ver 2;
-  gitCommit = "dd10d17";
+  gitCommit = "0cbc58b";
   # version is in vendor/k8s.io/kubernetes/pkg/version/base.go
-  k8sversion = "v1.10.0";
-  k8sgitcommit = "b81c8f8";
+  k8sversion = "v1.11.1";
+  k8sgitcommit = "b1b2997";
   k8sgitMajor = "0";
   k8sgitMinor = "1";
 in stdenv.mkDerivation rec {
@@ -28,12 +28,12 @@ in stdenv.mkDerivation rec {
     owner = "openshift";
     repo = "origin";
     rev = "v${version}";
-    sha256 = "13aglz005jl48z17vnggkvr39l5h6jcqgkfyvkaz4c3jakms1hi9";
+    sha256 = "06q4v2a1mm6c659ab0rzkqz6b66vx4avqfg0s9xckwhq420lzgka";
 };
 
   # go > 1.10
-  # [FATAL] [14:44:02+0000] Please install Go version go1.9 or use PERMISSIVE_GO=y to bypass this check.
-  buildInputs = [ removeReferencesTo makeWrapper which go_1_9 rsync go-bindata kerberos clang ];
+  # [FATAL] [14:44:02+0000] Please install Go version go1.10 or use PERMISSIVE_GO=y to bypass this check.
+  buildInputs = [ removeReferencesTo makeWrapper which go_1_10 rsync go-bindata kerberos clang ];
 
   outputs = [ "out" ];
 
@@ -78,7 +78,7 @@ in stdenv.mkDerivation rec {
   '';
 
   preFixup = ''
-    find $out/bin -type f -exec remove-references-to -t ${go_1_9} '{}' +
+    find $out/bin -type f -exec remove-references-to -t ${go_1_10} '{}' +
   '';
 
   meta = with stdenv.lib; {

From 37b50c08eb6f7016944c5ca702f8303d819314dd Mon Sep 17 00:00:00 2001
From: Vincent Demeester <vincent@sbr.pm>
Date: Mon, 12 Nov 2018 18:17:33 +0100
Subject: [PATCH 1080/1129] openshift: use go instead of go_1_10

Signed-off-by: Vincent Demeester <vincent@sbr.pm>
---
 .../applications/networking/cluster/openshift/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/networking/cluster/openshift/default.nix b/pkgs/applications/networking/cluster/openshift/default.nix
index 9640df6acfec..a34c728da168 100644
--- a/pkgs/applications/networking/cluster/openshift/default.nix
+++ b/pkgs/applications/networking/cluster/openshift/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, lib, fetchFromGitHub, removeReferencesTo, which, go_1_10, go-bindata, makeWrapper, rsync, utillinux
+{ stdenv, lib, fetchFromGitHub, removeReferencesTo, which, go, go-bindata, makeWrapper, rsync, utillinux
 , coreutils, kerberos, clang
 , components ? [
   "cmd/oc"
@@ -32,8 +32,8 @@ in stdenv.mkDerivation rec {
 };
 
   # go > 1.10
-  # [FATAL] [14:44:02+0000] Please install Go version go1.10 or use PERMISSIVE_GO=y to bypass this check.
-  buildInputs = [ removeReferencesTo makeWrapper which go_1_10 rsync go-bindata kerberos clang ];
+  # [FATAL] [14:44:02+0000] Please install Go version go or use PERMISSIVE_GO=y to bypass this check.
+  buildInputs = [ removeReferencesTo makeWrapper which go rsync go-bindata kerberos clang ];
 
   outputs = [ "out" ];
 
@@ -78,7 +78,7 @@ in stdenv.mkDerivation rec {
   '';
 
   preFixup = ''
-    find $out/bin -type f -exec remove-references-to -t ${go_1_10} '{}' +
+    find $out/bin -type f -exec remove-references-to -t ${go} '{}' +
   '';
 
   meta = with stdenv.lib; {

From 208aedb9715f7c682d1617449298d73f3077222d Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Th=C3=A9o=20Zimmermann?=
 <theo.zimmermann@univ-paris-diderot.fr>
Date: Sun, 11 Nov 2018 18:04:27 +0100
Subject: [PATCH 1081/1129] ocamlPackages.*: remove unnecessary unpackCmd

---
 doc/languages-frameworks/ocaml.xml                     | 8 +++-----
 pkgs/development/ocaml-modules/astring/default.nix     | 2 --
 pkgs/development/ocaml-modules/bos/default.nix         | 2 --
 pkgs/development/ocaml-modules/cmdliner/default.nix    | 2 --
 pkgs/development/ocaml-modules/cpuid/default.nix       | 2 --
 pkgs/development/ocaml-modules/cstruct/default.nix     | 2 --
 pkgs/development/ocaml-modules/cstruct/lwt.nix         | 2 +-
 pkgs/development/ocaml-modules/cstruct/ppx.nix         | 2 +-
 pkgs/development/ocaml-modules/cstruct/unix.nix        | 2 +-
 pkgs/development/ocaml-modules/csv/default.nix         | 2 --
 pkgs/development/ocaml-modules/digestif/default.nix    | 2 --
 pkgs/development/ocaml-modules/dtoa/default.nix        | 2 --
 pkgs/development/ocaml-modules/farfadet/default.nix    | 3 ---
 pkgs/development/ocaml-modules/fmt/default.nix         | 2 --
 pkgs/development/ocaml-modules/fpath/default.nix       | 2 --
 pkgs/development/ocaml-modules/functoria/default.nix   | 2 --
 pkgs/development/ocaml-modules/gg/default.nix          | 2 --
 pkgs/development/ocaml-modules/hex/default.nix         | 2 --
 pkgs/development/ocaml-modules/integers/default.nix    | 2 --
 pkgs/development/ocaml-modules/jsonm/default.nix       | 2 --
 pkgs/development/ocaml-modules/logs/default.nix        | 2 --
 pkgs/development/ocaml-modules/lru/default.nix         | 2 --
 pkgs/development/ocaml-modules/mtime/default.nix       | 2 --
 pkgs/development/ocaml-modules/nocrypto/default.nix    | 2 --
 pkgs/development/ocaml-modules/notty/default.nix       | 2 --
 pkgs/development/ocaml-modules/octavius/default.nix    | 2 --
 pkgs/development/ocaml-modules/otfm/default.nix        | 2 --
 pkgs/development/ocaml-modules/ppx_blob/default.nix    | 2 --
 pkgs/development/ocaml-modules/ppx_gen_rec/default.nix | 2 --
 pkgs/development/ocaml-modules/psq/default.nix         | 2 --
 pkgs/development/ocaml-modules/ptime/default.nix       | 2 --
 pkgs/development/ocaml-modules/react/default.nix       | 1 -
 pkgs/development/ocaml-modules/rope/default.nix        | 1 -
 pkgs/development/ocaml-modules/rresult/default.nix     | 2 --
 pkgs/development/ocaml-modules/topkg/default.nix       | 1 -
 pkgs/development/ocaml-modules/tsdl/default.nix        | 2 --
 pkgs/development/ocaml-modules/uchar/default.nix       | 1 -
 pkgs/development/ocaml-modules/uri/default.nix         | 2 --
 pkgs/development/ocaml-modules/uucd/default.nix        | 2 --
 pkgs/development/ocaml-modules/uucp/default.nix        | 2 --
 pkgs/development/ocaml-modules/uuidm/default.nix       | 4 +---
 pkgs/development/ocaml-modules/uunf/default.nix        | 2 --
 pkgs/development/ocaml-modules/uuseg/default.nix       | 2 --
 pkgs/development/ocaml-modules/uutf/default.nix        | 2 --
 pkgs/development/ocaml-modules/vg/default.nix          | 2 --
 pkgs/development/ocaml-modules/wtf8/default.nix        | 2 --
 pkgs/development/ocaml-modules/x509/default.nix        | 2 --
 pkgs/development/ocaml-modules/xmlm/default.nix        | 2 --
 48 files changed, 7 insertions(+), 94 deletions(-)

diff --git a/doc/languages-frameworks/ocaml.xml b/doc/languages-frameworks/ocaml.xml
index d1c29c72f726..ea0770616802 100644
--- a/doc/languages-frameworks/ocaml.xml
+++ b/doc/languages-frameworks/ocaml.xml
@@ -67,9 +67,9 @@ buildDunePackage rec {
 
  <para>
    Here is a second example, this time using a source archive generated with
-   <literal>dune-release</literal>. The <literal>unpackCmd</literal>
-   redefinition is necessary to be able to unpack the kind of tarball that
-   <literal>dune-release</literal> generates. This library does not depend
+   <literal>dune-release</literal>. It is a good idea to use this archive when
+   it is available as it will usually contain substituted variables such as a
+   <literal>%%VERSION%%</literal> field. This library does not depend
    on any other OCaml library and no tests are run after building it.
  </para>
 
@@ -87,8 +87,6 @@ buildDunePackage rec {
     sha256 = "1msg3vycd3k8qqj61sc23qks541cxpb97vrnrvrhjnqxsqnh6ygq";
   };
 
-  unpackCmd = "tar xjf $src";
-
   meta = with stdenv.lib; {
     homepage = https://github.com/flowtype/ocaml-wtf8;
     description = "WTF-8 is a superset of UTF-8 that allows unpaired surrogates.";
diff --git a/pkgs/development/ocaml-modules/astring/default.nix b/pkgs/development/ocaml-modules/astring/default.nix
index 827487be69bf..f5dd92422cc1 100644
--- a/pkgs/development/ocaml-modules/astring/default.nix
+++ b/pkgs/development/ocaml-modules/astring/default.nix
@@ -9,8 +9,6 @@ stdenv.mkDerivation rec {
     sha256 = "0ixjwc3plrljvj24za3l9gy0w30lsbggp8yh02lwrzw61ls4cri0";
   };
 
-  unpackCmd = "tar -xf $curSrc";
-
   buildInputs = [ ocaml findlib ocamlbuild topkg ];
 
   inherit (topkg) buildPhase installPhase;
diff --git a/pkgs/development/ocaml-modules/bos/default.nix b/pkgs/development/ocaml-modules/bos/default.nix
index a1f4c6bc5649..974348116656 100644
--- a/pkgs/development/ocaml-modules/bos/default.nix
+++ b/pkgs/development/ocaml-modules/bos/default.nix
@@ -10,8 +10,6 @@ stdenv.mkDerivation rec {
 		sha256 = "1s10iqx8rgnxr5n93lf4blwirjf8nlm272yg5sipr7lsr35v49wc";
 	};
 
-	unpackCmd = "tar xjf $src";
-
 	buildInputs = [ ocaml findlib ocamlbuild topkg ];
 	propagatedBuildInputs = [ astring fmt fpath logs rresult ];
 
diff --git a/pkgs/development/ocaml-modules/cmdliner/default.nix b/pkgs/development/ocaml-modules/cmdliner/default.nix
index 4b055a130fd2..9ba48e6ebfd2 100644
--- a/pkgs/development/ocaml-modules/cmdliner/default.nix
+++ b/pkgs/development/ocaml-modules/cmdliner/default.nix
@@ -15,8 +15,6 @@ stdenv.mkDerivation rec {
     sha256 = "18jqphjiifljlh9jg8zpl6310p3iwyaqphdkmf89acyaix0s4kj1";
   };
 
-  unpackCmd = "tar xjf $src";
-
   nativeBuildInputs = [ ocamlbuild topkg ];
   buildInputs = [ ocaml findlib ];
   propagatedBuildInputs = [ result ];
diff --git a/pkgs/development/ocaml-modules/cpuid/default.nix b/pkgs/development/ocaml-modules/cpuid/default.nix
index 37400856f1ae..0695da7ee37b 100644
--- a/pkgs/development/ocaml-modules/cpuid/default.nix
+++ b/pkgs/development/ocaml-modules/cpuid/default.nix
@@ -8,8 +8,6 @@ stdenv.mkDerivation {
     sha256 = "08k2558a3dnxn8msgpz8c93sfn0y027ganfdi2yvql0fp1ixv97p";
   };
 
-  unpackCmd = "tar xjf $src";
-
   buildInputs = [ ocaml findlib ocamlbuild topkg ocb-stubblr ];
 
   inherit (topkg) buildPhase installPhase;
diff --git a/pkgs/development/ocaml-modules/cstruct/default.nix b/pkgs/development/ocaml-modules/cstruct/default.nix
index c3941173bff3..37c7f660ca6b 100644
--- a/pkgs/development/ocaml-modules/cstruct/default.nix
+++ b/pkgs/development/ocaml-modules/cstruct/default.nix
@@ -9,8 +9,6 @@ buildDunePackage rec {
     sha256 = "1x4jxsvd1lrfibnjdjrkfl7hqsc48rljnwbap6faanj9qhwwa6v2";
   };
 
-  unpackCmd = "tar -xjf $curSrc";
-
   propagatedBuildInputs = [ sexplib ocplib-endian ];
 
   meta = {
diff --git a/pkgs/development/ocaml-modules/cstruct/lwt.nix b/pkgs/development/ocaml-modules/cstruct/lwt.nix
index 367a7fa2a445..fc6218389662 100644
--- a/pkgs/development/ocaml-modules/cstruct/lwt.nix
+++ b/pkgs/development/ocaml-modules/cstruct/lwt.nix
@@ -2,7 +2,7 @@
 
 buildDunePackage {
 	pname = "cstruct-lwt";
-	inherit (cstruct) version src unpackCmd meta;
+	inherit (cstruct) version src meta;
 
   minimumOCamlVersion = "4.02";
 
diff --git a/pkgs/development/ocaml-modules/cstruct/ppx.nix b/pkgs/development/ocaml-modules/cstruct/ppx.nix
index 837bca370cf3..5f4130dc23f2 100644
--- a/pkgs/development/ocaml-modules/cstruct/ppx.nix
+++ b/pkgs/development/ocaml-modules/cstruct/ppx.nix
@@ -2,7 +2,7 @@
 
 buildDunePackage {
 	pname = "ppx_cstruct";
-	inherit (cstruct) version src unpackCmd meta;
+	inherit (cstruct) version src meta;
 
   minimumOCamlVersion = "4.02";
 
diff --git a/pkgs/development/ocaml-modules/cstruct/unix.nix b/pkgs/development/ocaml-modules/cstruct/unix.nix
index 6fb34ba7821b..fb7612b5f05e 100644
--- a/pkgs/development/ocaml-modules/cstruct/unix.nix
+++ b/pkgs/development/ocaml-modules/cstruct/unix.nix
@@ -2,7 +2,7 @@
 
 buildDunePackage {
 	pname = "cstruct-unix";
-	inherit (cstruct) version src unpackCmd meta;
+	inherit (cstruct) version src meta;
 
   minimumOCamlVersion = "4.02";
 
diff --git a/pkgs/development/ocaml-modules/csv/default.nix b/pkgs/development/ocaml-modules/csv/default.nix
index 8b67200f32f7..e10b21286ddf 100644
--- a/pkgs/development/ocaml-modules/csv/default.nix
+++ b/pkgs/development/ocaml-modules/csv/default.nix
@@ -9,8 +9,6 @@ buildDunePackage rec {
 		sha256 = "0cgfb6cwhwy7ypc1i3jyfz6sdnykp75aqi6kk0g1a2d81yjwzbcg";
 	};
 
-	unpackCmd = "tar -xjf $src";
-
 	meta = {
 		description = "A pure OCaml library to read and write CSV files";
 		license = stdenv.lib.licenses.lgpl21;
diff --git a/pkgs/development/ocaml-modules/digestif/default.nix b/pkgs/development/ocaml-modules/digestif/default.nix
index cf8b5335d594..d8089bb533f0 100644
--- a/pkgs/development/ocaml-modules/digestif/default.nix
+++ b/pkgs/development/ocaml-modules/digestif/default.nix
@@ -13,8 +13,6 @@ stdenv.mkDerivation rec {
     sha256 = "0fsyfi5ps17j3wjav5176gf6z3a5xcw9aqhcr1gml9n9ayfbkhrd";
   };
 
-  unpackCmd = "tar -xjf $curSrc";
-
   buildInputs = [ ocaml findlib ocamlbuild topkg ];
 
   inherit (topkg) buildPhase installPhase;
diff --git a/pkgs/development/ocaml-modules/dtoa/default.nix b/pkgs/development/ocaml-modules/dtoa/default.nix
index 0e776f8e0c79..a5164ab7fa9b 100644
--- a/pkgs/development/ocaml-modules/dtoa/default.nix
+++ b/pkgs/development/ocaml-modules/dtoa/default.nix
@@ -11,8 +11,6 @@ buildDunePackage rec {
     sha256 = "0rzysj07z2q6gk0yhjxnjnba01vmdb9x32wwna10qk3rrb8r2pnn";
   };
 
-  unpackCmd = "tar xjf $src";
-
   hardeningDisable = stdenv.lib.optional stdenv.isDarwin "strictoverflow";
 
   meta = with stdenv.lib; {
diff --git a/pkgs/development/ocaml-modules/farfadet/default.nix b/pkgs/development/ocaml-modules/farfadet/default.nix
index 080cc74998df..20b6f7d0909e 100644
--- a/pkgs/development/ocaml-modules/farfadet/default.nix
+++ b/pkgs/development/ocaml-modules/farfadet/default.nix
@@ -15,8 +15,6 @@ stdenv.mkDerivation rec {
     sha256 = "06wvd57c8khpq0c2hvm15zng269zvabsw1lcaqphqdcckl67nsxr";
   };
 
-  unpackCmd = "tar -xjf $curSrc";
-
   buildInputs = [ ocaml findlib ocamlbuild topkg ];
 
   propagatedBuildInputs = [ faraday ];
@@ -31,4 +29,3 @@ stdenv.mkDerivation rec {
     inherit (ocaml.meta) platforms;
   };
 }
-
diff --git a/pkgs/development/ocaml-modules/fmt/default.nix b/pkgs/development/ocaml-modules/fmt/default.nix
index 2aa560e5349b..922f85996e14 100644
--- a/pkgs/development/ocaml-modules/fmt/default.nix
+++ b/pkgs/development/ocaml-modules/fmt/default.nix
@@ -8,8 +8,6 @@ stdenv.mkDerivation {
     sha256 = "1zj9azcxcn6skmb69ykgmi9z8c50yskwg03wqgh87lypgjdcz060";
   };
 
-  unpackCmd = "tar xjf $src";
-
   buildInputs = [ ocaml findlib ocamlbuild topkg cmdliner ];
   propagatedBuildInputs = [ result uchar ];
 
diff --git a/pkgs/development/ocaml-modules/fpath/default.nix b/pkgs/development/ocaml-modules/fpath/default.nix
index f812ab1d48c0..9317f50717e2 100644
--- a/pkgs/development/ocaml-modules/fpath/default.nix
+++ b/pkgs/development/ocaml-modules/fpath/default.nix
@@ -7,8 +7,6 @@ stdenv.mkDerivation {
     sha256 = "1hr05d8bpqmqcfdavn4rjk9rxr7v2zl84866f5knjifrm60sxqic";
   };
 
-  unpackCmd = "tar xjf $src";
-
   buildInputs = [ ocaml findlib ocamlbuild topkg ];
 
   propagatedBuildInputs = [ astring ];
diff --git a/pkgs/development/ocaml-modules/functoria/default.nix b/pkgs/development/ocaml-modules/functoria/default.nix
index 150d8db16a04..12b24a43956c 100644
--- a/pkgs/development/ocaml-modules/functoria/default.nix
+++ b/pkgs/development/ocaml-modules/functoria/default.nix
@@ -13,8 +13,6 @@ stdenv.mkDerivation rec {
 		sha256 = "019rl4rir4lwgjyqj2wq3ylw4daih1kxxgbc6ld6kzcq66mwr747";
 	};
 
-	unpackCmd = "tar xjf $src";
-
 	buildInputs = [ ocaml findlib ocamlbuild topkg ];
 	propagatedBuildInputs = [ bos cmdliner ocamlgraph ];
 
diff --git a/pkgs/development/ocaml-modules/gg/default.nix b/pkgs/development/ocaml-modules/gg/default.nix
index 0c80f39d9d7d..e32611e0c05f 100644
--- a/pkgs/development/ocaml-modules/gg/default.nix
+++ b/pkgs/development/ocaml-modules/gg/default.nix
@@ -23,8 +23,6 @@ stdenv.mkDerivation rec {
 
   createFindlibDestdir = true;
 
-  unpackCmd = "tar xjf $src";
-
   buildPhase = "ocaml pkg/build.ml native=true native-dynlink=true";
 
   installPhase = "opaline -libdir $OCAMLFIND_DESTDIR";
diff --git a/pkgs/development/ocaml-modules/hex/default.nix b/pkgs/development/ocaml-modules/hex/default.nix
index 0131b0359707..172eecbe29db 100644
--- a/pkgs/development/ocaml-modules/hex/default.nix
+++ b/pkgs/development/ocaml-modules/hex/default.nix
@@ -11,8 +11,6 @@ buildDunePackage rec {
     sha256 = "17hqf7z5afp2z2c55fk5myxkm7cm74259rqm94hcxkqlpdaqhm8h";
   };
 
-  unpackCmd = "tar -xjf $curSrc";
-
   propagatedBuildInputs = [ cstruct ];
   doCheck = true;
 
diff --git a/pkgs/development/ocaml-modules/integers/default.nix b/pkgs/development/ocaml-modules/integers/default.nix
index f7d22baf3e9e..bf2d2dd1e8b1 100644
--- a/pkgs/development/ocaml-modules/integers/default.nix
+++ b/pkgs/development/ocaml-modules/integers/default.nix
@@ -8,8 +8,6 @@ stdenv.mkDerivation {
 		sha256 = "08b1ljw88ny3l0mdq6xmffjk8anfc77igryva5jz1p6f4f746ywk";
 	};
 
-	unpackCmd = "tar xjf $src";
-
 	buildInputs = [ ocaml findlib ocamlbuild topkg ];
 
 	inherit (topkg) buildPhase installPhase;
diff --git a/pkgs/development/ocaml-modules/jsonm/default.nix b/pkgs/development/ocaml-modules/jsonm/default.nix
index 0599a5f19fec..ca286ee36f8c 100644
--- a/pkgs/development/ocaml-modules/jsonm/default.nix
+++ b/pkgs/development/ocaml-modules/jsonm/default.nix
@@ -13,8 +13,6 @@ stdenv.mkDerivation {
   buildInputs = [ ocaml findlib ocamlbuild topkg ];
   propagatedBuildInputs = [ uutf ];
 
-  unpackCmd = "tar xjf $src";
-
   inherit (topkg) buildPhase installPhase;
 
   meta = {
diff --git a/pkgs/development/ocaml-modules/logs/default.nix b/pkgs/development/ocaml-modules/logs/default.nix
index aead4b4756f3..4b67b23d97b6 100644
--- a/pkgs/development/ocaml-modules/logs/default.nix
+++ b/pkgs/development/ocaml-modules/logs/default.nix
@@ -16,8 +16,6 @@ stdenv.mkDerivation rec {
     sha256 = "1khbn7jqpid83zn8rvyh1x1sirls7zc878zj4fz985m5xlsfy853";
   };
 
-  unpackCmd = "tar xjf $src";
-
   buildInputs = [ ocaml findlib ocamlbuild topkg fmt cmdliner lwt ];
   propagatedBuildInputs = [ result ];
 
diff --git a/pkgs/development/ocaml-modules/lru/default.nix b/pkgs/development/ocaml-modules/lru/default.nix
index 3e474c5653a7..d6ff17211994 100644
--- a/pkgs/development/ocaml-modules/lru/default.nix
+++ b/pkgs/development/ocaml-modules/lru/default.nix
@@ -9,8 +9,6 @@ stdenv.mkDerivation rec {
     sha256 = "0bd7js9rrma1fjjjjc3fgr9l5fjbhgihx2nsaf96g2b35iiaimd0";
   };
 
-  unpackCmd = "tar -xjf $curSrc";
-
   buildInputs = [ ocaml findlib ocamlbuild topkg ];
 
   propagatedBuildInputs = [ psq ];
diff --git a/pkgs/development/ocaml-modules/mtime/default.nix b/pkgs/development/ocaml-modules/mtime/default.nix
index 69921537f5b5..b067fd99ded4 100644
--- a/pkgs/development/ocaml-modules/mtime/default.nix
+++ b/pkgs/development/ocaml-modules/mtime/default.nix
@@ -23,8 +23,6 @@ stdenv.mkDerivation {
     inherit (param) sha256;
   };
 
-  unpackCmd = "tar xjf $src";
-
   buildInputs = [ ocaml findlib ocamlbuild topkg ]
   ++ stdenv.lib.optional jsooSupport js_of_ocaml;
 
diff --git a/pkgs/development/ocaml-modules/nocrypto/default.nix b/pkgs/development/ocaml-modules/nocrypto/default.nix
index 67de1863e004..813b4d7f7a4a 100644
--- a/pkgs/development/ocaml-modules/nocrypto/default.nix
+++ b/pkgs/development/ocaml-modules/nocrypto/default.nix
@@ -16,8 +16,6 @@ stdenv.mkDerivation rec {
     sha256 = "0zshi9hlhcz61n5z1k6fx6rsi0pl4xgahsyl2jp0crqkaf3hqwlg";
   };
 
-  unpackCmd = "tar xjf $curSrc";
-
   patches = [
     (fetchpatch {
       url = "https://raw.githubusercontent.com/ocaml/opam-repository/master/packages/nocrypto/nocrypto.0.5.4-1/files/0001-add-missing-runtime-dependencies-in-_tags.patch";
diff --git a/pkgs/development/ocaml-modules/notty/default.nix b/pkgs/development/ocaml-modules/notty/default.nix
index 2dffb472f3e8..f273f28a71eb 100644
--- a/pkgs/development/ocaml-modules/notty/default.nix
+++ b/pkgs/development/ocaml-modules/notty/default.nix
@@ -19,8 +19,6 @@ stdenv.mkDerivation rec {
     sha256 = "0wdfmgx1mz77s7m451vy8r9i4iqwn7s7b39kpbpckf3w9417riq0";
   };
 
-  unpackCmd = "tar -xjf $curSrc";
-
   buildInputs = [ ocaml findlib ocamlbuild topkg ocb-stubblr ];
   propagatedBuildInputs = [ result uucp uuseg uutf ] ++
                           optional withLwt lwt;
diff --git a/pkgs/development/ocaml-modules/octavius/default.nix b/pkgs/development/ocaml-modules/octavius/default.nix
index 57e3c9bfa745..6c2ee821c0d5 100644
--- a/pkgs/development/ocaml-modules/octavius/default.nix
+++ b/pkgs/development/ocaml-modules/octavius/default.nix
@@ -10,8 +10,6 @@ stdenv.mkDerivation {
 		sha256 = "02milzzlr4xk5aymg2fjz27f528d5pyscqvld3q0dm41zcpkz5ml";
 	};
 
-	unpackCmd = "tar xjf $src";
-
 	buildInputs = [ ocaml findlib ocamlbuild topkg ];
 
 	inherit (topkg) buildPhase installPhase;
diff --git a/pkgs/development/ocaml-modules/otfm/default.nix b/pkgs/development/ocaml-modules/otfm/default.nix
index 05c25c81d5a0..081876f7075c 100644
--- a/pkgs/development/ocaml-modules/otfm/default.nix
+++ b/pkgs/development/ocaml-modules/otfm/default.nix
@@ -21,8 +21,6 @@ stdenv.mkDerivation rec {
 
   propagatedBuildInputs = [ uutf result ];
 
-  unpackCmd = "tar xjf $src";
-
   inherit (topkg) buildPhase installPhase;
 
   meta = with stdenv.lib; {
diff --git a/pkgs/development/ocaml-modules/ppx_blob/default.nix b/pkgs/development/ocaml-modules/ppx_blob/default.nix
index b36eaed500f8..3b72853e7828 100644
--- a/pkgs/development/ocaml-modules/ppx_blob/default.nix
+++ b/pkgs/development/ocaml-modules/ppx_blob/default.nix
@@ -9,8 +9,6 @@ buildDunePackage rec {
     sha256 = "1xmslk1mwdzhy1bydgsjlcb7h544c39hvxa8lywp8w72gaggjl16";
   };
 
-  unpackCmd = "tar xjf $curSrc";
-
   buildInputs = [ alcotest ocaml-migrate-parsetree ];
   doCheck = true;
 
diff --git a/pkgs/development/ocaml-modules/ppx_gen_rec/default.nix b/pkgs/development/ocaml-modules/ppx_gen_rec/default.nix
index 270afae754be..5d45ee90c2e9 100644
--- a/pkgs/development/ocaml-modules/ppx_gen_rec/default.nix
+++ b/pkgs/development/ocaml-modules/ppx_gen_rec/default.nix
@@ -11,8 +11,6 @@ buildDunePackage rec {
     sha256 = "0qy0wa3rd5yh1612jijadi1yddfslpsmmmf69phi2dhr3vmkhza7";
   };
 
-  unpackCmd = "tar xjf $src";
-
   buildInputs = [ ocaml-migrate-parsetree ];
 
   meta = with stdenv.lib; {
diff --git a/pkgs/development/ocaml-modules/psq/default.nix b/pkgs/development/ocaml-modules/psq/default.nix
index fc3fa81a02a9..08b9c10d9821 100644
--- a/pkgs/development/ocaml-modules/psq/default.nix
+++ b/pkgs/development/ocaml-modules/psq/default.nix
@@ -13,8 +13,6 @@ stdenv.mkDerivation rec {
     sha256 = "08ghgdivbjrxnaqc3hsb69mr9s2ql5ds0fb97b7z6zimzqibz6lp";
   };
 
-  unpackCmd = "tar -xjf $curSrc";
-
   buildInputs = [ ocaml findlib ocamlbuild topkg ];
 
   inherit (topkg) buildPhase installPhase;
diff --git a/pkgs/development/ocaml-modules/ptime/default.nix b/pkgs/development/ocaml-modules/ptime/default.nix
index b0067d44911f..4ac473fef006 100644
--- a/pkgs/development/ocaml-modules/ptime/default.nix
+++ b/pkgs/development/ocaml-modules/ptime/default.nix
@@ -9,8 +9,6 @@ stdenv.mkDerivation rec {
     sha256 = "0z2snhda8bg136xkw2msw6k2dz84vb49p8bgzrxfs8mawdlk0kkg";
   };
 
-  unpackCmd = "tar -xf $curSrc";
-
   buildInputs = [ ocaml findlib ocamlbuild topkg js_of_ocaml ];
 
   propagatedBuildInputs = [ result ];
diff --git a/pkgs/development/ocaml-modules/react/default.nix b/pkgs/development/ocaml-modules/react/default.nix
index 920ee05244a1..9d070b962b4c 100644
--- a/pkgs/development/ocaml-modules/react/default.nix
+++ b/pkgs/development/ocaml-modules/react/default.nix
@@ -8,7 +8,6 @@ stdenv.mkDerivation {
     sha256 = "1aj8w79gdd9xnrbz7s5p8glcb4pmimi8jp9f439dqnf6ih3mqb3v";
   };
 
-  unpackCmd = "tar xjf $src";
   buildInputs = [ ocaml findlib topkg ocamlbuild ];
 
   inherit (topkg) buildPhase installPhase;
diff --git a/pkgs/development/ocaml-modules/rope/default.nix b/pkgs/development/ocaml-modules/rope/default.nix
index 9e9ebea6b6a7..4353c606d618 100644
--- a/pkgs/development/ocaml-modules/rope/default.nix
+++ b/pkgs/development/ocaml-modules/rope/default.nix
@@ -8,7 +8,6 @@ let param =
     sha256 = "06pkbnkad2ck50jn59ggwv154yd9vb01abblihvam6p27m4za1pc";
     buildInputs = [ dune ];
     extra = {
-      unpackCmd = "tar -xjf $curSrc";
       buildPhase = "dune build -p rope";
       inherit (dune) installPhase;
     };
diff --git a/pkgs/development/ocaml-modules/rresult/default.nix b/pkgs/development/ocaml-modules/rresult/default.nix
index 2cb602973f5f..270432b86e94 100644
--- a/pkgs/development/ocaml-modules/rresult/default.nix
+++ b/pkgs/development/ocaml-modules/rresult/default.nix
@@ -8,8 +8,6 @@ stdenv.mkDerivation rec {
 		sha256 = "1k69a3gvrk7f2cshwjzvk7818f0bwxhacgd14wxy6d4gmrggci86";
 	};
 
-	unpackCmd = "tar xjf $src";
-
 	buildInputs = [ ocaml findlib ocamlbuild topkg ];
 
 	inherit (topkg) buildPhase installPhase;
diff --git a/pkgs/development/ocaml-modules/topkg/default.nix b/pkgs/development/ocaml-modules/topkg/default.nix
index 3ff641ff93e5..3e6b78a71719 100644
--- a/pkgs/development/ocaml-modules/topkg/default.nix
+++ b/pkgs/development/ocaml-modules/topkg/default.nix
@@ -32,7 +32,6 @@ stdenv.mkDerivation rec {
   buildInputs = [ ocaml findlib ocamlbuild ];
   propagatedBuildInputs = [ result ];
 
-  unpackCmd = "tar xjf ${src}";
   buildPhase = "${run} build";
   createFindlibDestdir = true;
   installPhase = "${opaline}/bin/opaline -prefix $out -libdir $OCAMLFIND_DESTDIR";
diff --git a/pkgs/development/ocaml-modules/tsdl/default.nix b/pkgs/development/ocaml-modules/tsdl/default.nix
index 4230d098e0da..230aab2617f1 100644
--- a/pkgs/development/ocaml-modules/tsdl/default.nix
+++ b/pkgs/development/ocaml-modules/tsdl/default.nix
@@ -22,8 +22,6 @@ stdenv.mkDerivation {
   buildInputs = [ ocaml findlib ocamlbuild topkg result ocb-stubblr ];
   propagatedBuildInputs = [ SDL2 ctypes ];
 
-  unpackCmd = "tar xjf $src";
-
   preConfigure = ''
     # The following is done to avoid an additional dependency (ncurses)
     # due to linking in the custom bytecode runtime. Instead, just
diff --git a/pkgs/development/ocaml-modules/uchar/default.nix b/pkgs/development/ocaml-modules/uchar/default.nix
index 8fddf883da5d..c943d3ce35a8 100644
--- a/pkgs/development/ocaml-modules/uchar/default.nix
+++ b/pkgs/development/ocaml-modules/uchar/default.nix
@@ -8,7 +8,6 @@ stdenv.mkDerivation {
     sha256 = "1w2saw7zanf9m9ffvz2lvcxvlm118pws2x1wym526xmydhqpyfa7";
   };
 
-  unpackCmd = "tar xjf $src";
   buildInputs = [ ocaml ocamlbuild findlib opaline ];
   buildPhase = "ocaml pkg/build.ml native=true native-dynlink=true";
   installPhase = "opaline -libdir $OCAMLFIND_DESTDIR";
diff --git a/pkgs/development/ocaml-modules/uri/default.nix b/pkgs/development/ocaml-modules/uri/default.nix
index a8b664b0720c..6073411a24d2 100644
--- a/pkgs/development/ocaml-modules/uri/default.nix
+++ b/pkgs/development/ocaml-modules/uri/default.nix
@@ -11,8 +11,6 @@ buildDunePackage rec {
     sha256 = "1m845rwd70wi4iijkrigyz939m1x84ba70hvv0d9sgk6971w4kz0";
   };
 
-  unpackCmd = "tar -xjf $curSrc";
-
   buildInputs = [ ounit ];
   propagatedBuildInputs = [ ppx_sexp_conv re sexplib stringext ];
   doCheck = true;
diff --git a/pkgs/development/ocaml-modules/uucd/default.nix b/pkgs/development/ocaml-modules/uucd/default.nix
index 60429ca4b401..683ace8cbc57 100644
--- a/pkgs/development/ocaml-modules/uucd/default.nix
+++ b/pkgs/development/ocaml-modules/uucd/default.nix
@@ -15,8 +15,6 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ ocaml findlib ocamlbuild topkg ];
 
-  unpackCmd = "tar xjf $src";
-
   inherit (topkg) buildPhase installPhase;
 
   propagatedBuildInputs = [ xmlm ];
diff --git a/pkgs/development/ocaml-modules/uucp/default.nix b/pkgs/development/ocaml-modules/uucp/default.nix
index 6e61d39fe8ea..1d3e9f283ce8 100644
--- a/pkgs/development/ocaml-modules/uucp/default.nix
+++ b/pkgs/development/ocaml-modules/uucp/default.nix
@@ -21,8 +21,6 @@ stdenv.mkDerivation {
 
   propagatedBuildInputs = [ uchar ];
 
-  unpackCmd = "tar xjf $src";
-
   buildPhase = "${topkg.buildPhase} --with-cmdliner false";
 
   inherit (topkg) installPhase;
diff --git a/pkgs/development/ocaml-modules/uuidm/default.nix b/pkgs/development/ocaml-modules/uuidm/default.nix
index b295143c0bc3..0c45e6c8af18 100644
--- a/pkgs/development/ocaml-modules/uuidm/default.nix
+++ b/pkgs/development/ocaml-modules/uuidm/default.nix
@@ -2,14 +2,12 @@
 
 stdenv.mkDerivation rec {
   version = "0.9.6";
-  name = "uuidm-${version}"; 
+  name = "uuidm-${version}";
   src = fetchurl {
     url = "http://erratique.ch/software/uuidm/releases/uuidm-${version}.tbz";
     sha256 = "0hz4fdx0x16k0pw9995vkz5d1hmzz6b16wck9li399rcbfnv5jlc";
   };
 
-  unpackCmd = "tar -xf $curSrc";
-
   buildInputs = [ ocaml findlib ocamlbuild topkg cmdliner ];
 
   inherit (topkg) buildPhase installPhase;
diff --git a/pkgs/development/ocaml-modules/uunf/default.nix b/pkgs/development/ocaml-modules/uunf/default.nix
index 4b0ce9e899c8..e6ecec3145e4 100644
--- a/pkgs/development/ocaml-modules/uunf/default.nix
+++ b/pkgs/development/ocaml-modules/uunf/default.nix
@@ -19,8 +19,6 @@ stdenv.mkDerivation rec {
 
   propagatedBuildInputs = [ uchar ];
 
-  unpackCmd = "tar xjf $src";
-
   inherit (topkg) buildPhase installPhase;
 
   meta = with stdenv.lib; {
diff --git a/pkgs/development/ocaml-modules/uuseg/default.nix b/pkgs/development/ocaml-modules/uuseg/default.nix
index a0ed74f7cda9..df56e904ab67 100644
--- a/pkgs/development/ocaml-modules/uuseg/default.nix
+++ b/pkgs/development/ocaml-modules/uuseg/default.nix
@@ -18,8 +18,6 @@ stdenv.mkDerivation rec {
   buildInputs = [ ocaml findlib ocamlbuild cmdliner topkg uutf ];
   propagatedBuildInputs = [ uucp uchar ];
 
-  unpackCmd = "tar xjf $src";
-
   inherit (topkg) buildPhase installPhase;
 
   meta = with stdenv.lib; {
diff --git a/pkgs/development/ocaml-modules/uutf/default.nix b/pkgs/development/ocaml-modules/uutf/default.nix
index 95ec93d8584b..9b6c1868ad32 100644
--- a/pkgs/development/ocaml-modules/uutf/default.nix
+++ b/pkgs/development/ocaml-modules/uutf/default.nix
@@ -16,8 +16,6 @@ stdenv.mkDerivation rec {
   buildInputs = [ ocaml findlib ocamlbuild topkg cmdliner ];
   propagatedBuildInputs = [ uchar ];
 
-  unpackCmd = "tar xjf $src";
-
   inherit (topkg) buildPhase installPhase;
 
   meta = with stdenv.lib; {
diff --git a/pkgs/development/ocaml-modules/vg/default.nix b/pkgs/development/ocaml-modules/vg/default.nix
index 582b2dc8a2c0..5e0d715b0beb 100644
--- a/pkgs/development/ocaml-modules/vg/default.nix
+++ b/pkgs/development/ocaml-modules/vg/default.nix
@@ -32,8 +32,6 @@ stdenv.mkDerivation rec {
                           ++ optionals pdfBackend [ uutf otfm ]
                           ++ optionals htmlcBackend [ js_of_ocaml js_of_ocaml-ocamlbuild js_of_ocaml-ppx ];
 
-  unpackCmd = "tar xjf $src";
-
   buildPhase = topkg.buildPhase
     + " --with-uutf ${boolToString pdfBackend}"
     + " --with-otfm ${boolToString pdfBackend}"
diff --git a/pkgs/development/ocaml-modules/wtf8/default.nix b/pkgs/development/ocaml-modules/wtf8/default.nix
index 1c105fbc0259..7f3686abb51a 100644
--- a/pkgs/development/ocaml-modules/wtf8/default.nix
+++ b/pkgs/development/ocaml-modules/wtf8/default.nix
@@ -11,8 +11,6 @@ buildDunePackage rec {
     sha256 = "1msg3vycd3k8qqj61sc23qks541cxpb97vrnrvrhjnqxsqnh6ygq";
   };
 
-  unpackCmd = "tar xjf $src";
-
   meta = with stdenv.lib; {
     homepage = https://github.com/flowtype/ocaml-wtf8;
     description = "WTF-8 is a superset of UTF-8 that allows unpaired surrogates.";
diff --git a/pkgs/development/ocaml-modules/x509/default.nix b/pkgs/development/ocaml-modules/x509/default.nix
index 44a25865c1a7..8d4bd4c82b39 100644
--- a/pkgs/development/ocaml-modules/x509/default.nix
+++ b/pkgs/development/ocaml-modules/x509/default.nix
@@ -12,8 +12,6 @@ stdenv.mkDerivation rec {
     sha256 = "1c62mw9rnzq0rs3ihbhfs18nv4mdzwag7893hlqgji3wmaai70pk";
   };
 
-  unpackCmd = "tar -xjf $curSrc";
-
   buildInputs = [ ocaml findlib ocamlbuild topkg ppx_sexp_conv ounit cstruct-unix ];
   propagatedBuildInputs = [ asn1-combinators astring nocrypto ];
 
diff --git a/pkgs/development/ocaml-modules/xmlm/default.nix b/pkgs/development/ocaml-modules/xmlm/default.nix
index a1765296d57d..d3166d4cd732 100644
--- a/pkgs/development/ocaml-modules/xmlm/default.nix
+++ b/pkgs/development/ocaml-modules/xmlm/default.nix
@@ -19,8 +19,6 @@ stdenv.mkDerivation rec {
 
   buildInputs = [ ocaml findlib ocamlbuild topkg ];
 
-  unpackCmd = "tar xjf $src";
-
   inherit (topkg) buildPhase installPhase;
 
   meta = with stdenv.lib; {

From c12f75649ed05815141cc208b3f2fa61e110917a Mon Sep 17 00:00:00 2001
From: Antoine Eiche <lewo@abesis.fr>
Date: Mon, 30 Apr 2018 15:01:30 +0200
Subject: [PATCH 1082/1129] dockerTools.buildImageWithNixDb: simplifications
 and switch to closureInfo

Since Nix 2 is now the stable Nix version, we can use closureInfo
which simplifies the Nix database initialisation (size and hash are
included in the "dump").
---
 pkgs/build-support/docker/default.nix | 35 +++++----------------------
 1 file changed, 6 insertions(+), 29 deletions(-)

diff --git a/pkgs/build-support/docker/default.nix b/pkgs/build-support/docker/default.nix
index 2d6d6c1fc91d..890f64a9d3b1 100644
--- a/pkgs/build-support/docker/default.nix
+++ b/pkgs/build-support/docker/default.nix
@@ -11,7 +11,6 @@
   pkgs,
   pigz,
   nix,
-  perl,
   runCommand,
   rsync,
   shadow,
@@ -23,6 +22,7 @@
   referencesByPopularity,
   writeScript,
   writeText,
+  closureInfo
 }:
 
 # WARNING: this API is unstable and may be subject to backwards-incompatible changes in the future.
@@ -261,19 +261,6 @@ rec {
       ${text}
     '';
 
-  nixRegistration = contents: runCommand "nix-registration" {
-    buildInputs = [ nix perl ];
-    # For obtaining the closure of `contents'.
-    exportReferencesGraph =
-      let contentsList = if builtins.isList contents then contents else [ contents ];
-      in map (x: [("closure-" + baseNameOf x) x]) contentsList;
-    }
-    ''
-      mkdir $out
-      printRegistration=1 perl ${pkgs.pathsFromGraph} closure-* > $out/db.dump
-      perl ${pkgs.pathsFromGraph} closure-* > $out/storePaths
-    '';
-
   # Create $maxLayers worth of Docker Layers, one layer per store path
   # unless there are more paths than $maxLayers. In that case, create
   # $maxLayers-1 for the most popular layers, and smush the remainaing
@@ -795,29 +782,19 @@ rec {
   # the container.
   # Be careful since this doesn't work well with multilayer.
   buildImageWithNixDb = args@{ contents ? null, extraCommands ? "", ... }:
-    buildImage (args // {
+    let contentsList = if builtins.isList contents then contents else [ contents ];
+    in buildImage (args // {
       extraCommands = ''
         echo "Generating the nix database..."
         echo "Warning: only the database of the deepest Nix layer is loaded."
         echo "         If you want to use nix commands in the container, it would"
         echo "         be better to only have one layer that contains a nix store."
-        # This requires Nix 1.12 or higher
-        export NIX_REMOTE=local?root=$PWD
-        ${nix}/bin/nix-store --load-db < ${nixRegistration contents}/db.dump
 
-        # We fill the store in order to run the 'verify' command that
-        # generates hash and size of output paths.
-        # Note when Nix 1.12 is be the stable one, the database dump
-        # generated by the exportReferencesGraph function will
-        # contains sha and size. See
-        # https://github.com/NixOS/nix/commit/c2b0d8749f7e77afc1c4b3e8dd36b7ee9720af4a
-        storePaths=$(cat ${nixRegistration contents}/storePaths)
-        echo "Copying everything to /nix/store (will take a while)..."
-        cp -prd $storePaths nix/store/
-        ${nix}/bin/nix-store --verify --check-contents
+        export NIX_REMOTE=local?root=$PWD
+        ${nix}/bin/nix-store --load-db < ${closureInfo {rootPaths = contentsList;}}/registration
 
         mkdir -p nix/var/nix/gcroots/docker/
-        for i in ${lib.concatStringsSep " " contents}; do
+        for i in ${lib.concatStringsSep " " contentsList}; do
           ln -s $i nix/var/nix/gcroots/docker/$(basename $i)
         done;
       '' + extraCommands;

From c618667bd3a41cc43032c6db48f539a1e6e97f8e Mon Sep 17 00:00:00 2001
From: Chris Ostrouchov <chris.ostrouchov@gmail.com>
Date: Tue, 18 Sep 2018 13:32:01 -0400
Subject: [PATCH 1083/1129] pythonPackages.ovito: init at 3.0.0

---
 .../python-modules/ovito/default.nix          | 33 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  4 +++
 2 files changed, 37 insertions(+)
 create mode 100644 pkgs/development/python-modules/ovito/default.nix

diff --git a/pkgs/development/python-modules/ovito/default.nix b/pkgs/development/python-modules/ovito/default.nix
new file mode 100644
index 000000000000..cae337904b20
--- /dev/null
+++ b/pkgs/development/python-modules/ovito/default.nix
@@ -0,0 +1,33 @@
+{ stdenv, fetchgit
+, cmake
+, qtbase, libav, netcdf, qscintilla, zlib, boost, git, fftw, hdf5, libssh
+, pythonPackages
+}:
+
+stdenv.mkDerivation rec {
+  # compilation error in 2.9.0 https://gitlab.com/stuko/ovito/issues/40
+  # This is not the "released" 3.0.0 just a commit
+  version = "3.0.0";
+  name = "ovito-${version}";
+
+  src = fetchgit {
+    url = "https://gitlab.com/stuko/ovito";
+    rev = "a28c28182a879d2a1b511ec56f9845306dd8a4db";
+    sha256 = "1vqzv3gzwf8r0g05a7fj8hdyvnzq2h3wdfck7j6n1av6rvp7hi5r";
+  };
+
+  buildInputs = [ cmake libav netcdf qscintilla zlib boost zlib git fftw hdf5 libssh ];
+  propagatedBuildInputs = with pythonPackages; [ sphinx numpy sip pyqt5 matplotlib ase ];
+
+  enableParallelBuilding = true;
+
+  meta = with stdenv.lib; {
+    description = "Scientific visualization and analysis software for atomistic simulation data";
+    homepage = https://www.ovito.org;
+    license = licenses.gpl3;
+    maintainers = [ maintainers.costrouc ];
+    # ensures not built on hydra
+    # https://github.com/NixOS/nixpkgs/pull/46846#issuecomment-436388048
+    hydraPlatforms = [ ];
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 1870d1b76fba..ff50b82bdff9 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -454,6 +454,10 @@ in {
 
   outcome = callPackage ../development/python-modules/outcome {};
 
+  ovito = toPythonModule (pkgs.libsForQt5.callPackage ../development/python-modules/ovito {
+      pythonPackages = self;
+    });
+
   palettable = callPackage ../development/python-modules/palettable { };
 
   pathlib = callPackage ../development/python-modules/pathlib { };

From e6ed52e8a0c463bf93a3b142291c807a3a499a44 Mon Sep 17 00:00:00 2001
From: hlolli <hlolli@gmail.com>
Date: Mon, 12 Nov 2018 20:28:14 +0100
Subject: [PATCH 1084/1129] lumo: use newer clj2nix which passes pkgs as an
 argument to deps.nix instead of import <pkgs>

---
 .../interpreters/clojurescript/lumo/default.nix           | 4 ++--
 pkgs/development/interpreters/clojurescript/lumo/deps.nix | 8 +++++---
 2 files changed, 7 insertions(+), 5 deletions(-)

diff --git a/pkgs/development/interpreters/clojurescript/lumo/default.nix b/pkgs/development/interpreters/clojurescript/lumo/default.nix
index 40276cf3c42b..bc2d0e5be5a8 100644
--- a/pkgs/development/interpreters/clojurescript/lumo/default.nix
+++ b/pkgs/development/interpreters/clojurescript/lumo/default.nix
@@ -1,6 +1,6 @@
 { stdenv, lib, fetchurl, clojure,
   nodejs, jre, unzip,  nodePackages,
-  python, openssl }:
+  python, openssl, pkgs }:
 
 let # packageJSON=./package.json;
     version = "1.9.0";
@@ -118,7 +118,7 @@ let # packageJSON=./package.json;
     '';
 
 
-    cljdeps   = import ./deps.nix;
+    cljdeps   = import ./deps.nix { inherit pkgs; };
     cljpaths  = cljdeps.makePaths {};
     classp    = cljdeps.makeClasspaths {
                   extraClasspaths=["src/js" "src/cljs/bundled" "src/cljs/snapshot"];
diff --git a/pkgs/development/interpreters/clojurescript/lumo/deps.nix b/pkgs/development/interpreters/clojurescript/lumo/deps.nix
index b73c41b8f3d7..8ce50b6e7b4b 100644
--- a/pkgs/development/interpreters/clojurescript/lumo/deps.nix
+++ b/pkgs/development/interpreters/clojurescript/lumo/deps.nix
@@ -1,5 +1,7 @@
-# generated by clj2nix
-let repos = [
+# generated by clj2nix-1.0.3
+{ pkgs ? import <nixpkgs> {} }:
+  
+  let repos = [
         "https://repo.clojars.org/"
         "https://repo1.maven.org/"
         "http://central.maven.org/maven2/"
@@ -7,7 +9,7 @@ let repos = [
         "http://oss.sonatype.org/content/repositories/public/"
         "http://repo.typesafe.com/typesafe/releases/"
       ];
-  pkgs = import <nixpkgs> {};
+
   in rec {
       makePaths = {extraClasspaths ? []}: (builtins.map (dep: if builtins.hasAttr "jar" dep.path then dep.path.jar else dep.path) packages) ++ extraClasspaths;
       makeClasspaths = {extraClasspaths ? []}: builtins.concatStringsSep ":" (makePaths {inherit extraClasspaths;});

From 04fe84d2393027256dde64c9683deda527470142 Mon Sep 17 00:00:00 2001
From: Vincent Weisner <vincentweisner@icloud.com>
Date: Mon, 12 Nov 2018 15:00:50 -0500
Subject: [PATCH 1085/1129] Cross-Compiling: alpha-embedded Support Added

This commit adds support for Embedded systems with DEC Alpha CPUs.
---
 pkgs/top-level/release-cross.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/top-level/release-cross.nix b/pkgs/top-level/release-cross.nix
index 755297264625..3da59250ced6 100644
--- a/pkgs/top-level/release-cross.nix
+++ b/pkgs/top-level/release-cross.nix
@@ -146,6 +146,7 @@ in
   aarch64-embedded = mapTestOnCross lib.systems.examples.aarch64-embedded embedded;
   i686-embedded = mapTestOnCross lib.systems.examples.i686-embedded embedded;
   x86_64-embedded = mapTestOnCross lib.systems.examples.x86_64-embedded embedded;
+  alpha-embedded = mapTestOnCross lib.systems.examples.alpha-embedded embedded;
 
   /* Cross-built bootstrap tools for every supported platform */
   bootstrapTools = let

From 1b6984bec19e6de109d6f1a2a25169cc1d4589ee Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Mon, 12 Nov 2018 12:00:57 -0800
Subject: [PATCH 1086/1129] ibus-engines.m17n: 1.3.4 -> 1.4.1 (#50089)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ibus-m17n/versions
---
 pkgs/tools/inputmethods/ibus-engines/ibus-m17n/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/tools/inputmethods/ibus-engines/ibus-m17n/default.nix b/pkgs/tools/inputmethods/ibus-engines/ibus-m17n/default.nix
index c53f766cb7d3..a0d50cf94790 100644
--- a/pkgs/tools/inputmethods/ibus-engines/ibus-m17n/default.nix
+++ b/pkgs/tools/inputmethods/ibus-engines/ibus-m17n/default.nix
@@ -5,13 +5,13 @@
 
 stdenv.mkDerivation rec {
   name = "ibus-m17n-${version}";
-  version = "1.3.4";
+  version = "1.4.1";
 
   src = fetchFromGitHub {
     owner  = "ibus";
     repo   = "ibus-m17n";
     rev    = version;
-    sha256 = "1n0bvgc4jyksgvzrw5zs2pxcpxcn3gcc0j2kasbznm34fpv3frsr";
+    sha256 = "1xl7swqn46nhi43rka0zx666mpk667ykag3sz07x0zqrwi41frps";
   };
 
   buildInputs = [

From cec5d5bffc35632174d120269b88fa72ed4e3182 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Mon, 12 Nov 2018 12:02:24 -0800
Subject: [PATCH 1087/1129] ipset: 6.38 -> 7.0 (#50078)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/ipset/versions
---
 pkgs/os-specific/linux/ipset/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/ipset/default.nix b/pkgs/os-specific/linux/ipset/default.nix
index d736caa535d4..51c6f479504f 100644
--- a/pkgs/os-specific/linux/ipset/default.nix
+++ b/pkgs/os-specific/linux/ipset/default.nix
@@ -1,11 +1,11 @@
 { stdenv, fetchurl, pkgconfig, libmnl }:
 
 stdenv.mkDerivation rec {
-  name = "ipset-6.38";
+  name = "ipset-7.0";
 
   src = fetchurl {
     url = "http://ipset.netfilter.org/${name}.tar.bz2";
-    sha256 = "0i72wcljl0nkpmzc20jcch3hpphrm0qp4v4j4ajamq0zlddn5vyf";
+    sha256 = "1bs1qz6cs9z167f36xsbg93fb6dj5bw05shk07fkwkjiglxhzyn6";
   };
 
   nativeBuildInputs = [ pkgconfig ];

From c82977caf44e9b4a6fb9a97639e14e8e04d9c1c0 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Mon, 12 Nov 2018 12:33:13 -0800
Subject: [PATCH 1088/1129] libgit2_0_27: 0.27.5 -> 0.27.7 (#50064)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/libgit2/versions
---
 pkgs/development/libraries/git2/0.27.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/git2/0.27.nix b/pkgs/development/libraries/git2/0.27.nix
index db627449e1ba..93948a1b0d67 100644
--- a/pkgs/development/libraries/git2/0.27.nix
+++ b/pkgs/development/libraries/git2/0.27.nix
@@ -4,14 +4,14 @@
 }:
 
 stdenv.mkDerivation rec {
-  version = "0.27.5";
+  version = "0.27.7";
   name = "libgit2-${version}";
 
   src = fetchFromGitHub {
     owner = "libgit2";
     repo = "libgit2";
     rev = "v${version}";
-    sha256 = "1f6jxgw4pf6jln439v1pj8a0kgym5sq5xry8x0gq18dr5gv3wims";
+    sha256 = "1q3mp7xjpbmdsnk4sdzf2askbb4pgbxcmr1h7y7zk2738dndwkha";
   };
 
   cmakeFlags = [ "-DTHREADSAFE=ON" ];

From 91626f8a1bdcf9fd91603703b7d9109e26930fac Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Mon, 12 Nov 2018 12:43:40 -0800
Subject: [PATCH 1089/1129] leatherman: 1.5.2 -> 1.5.3 (#50067)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/leatherman/versions
---
 pkgs/development/libraries/leatherman/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/leatherman/default.nix b/pkgs/development/libraries/leatherman/default.nix
index 259975815d8e..26e2bd0811c0 100644
--- a/pkgs/development/libraries/leatherman/default.nix
+++ b/pkgs/development/libraries/leatherman/default.nix
@@ -2,10 +2,10 @@
 
 stdenv.mkDerivation rec {
   name = "leatherman-${version}";
-  version = "1.5.2";
+  version = "1.5.3";
 
   src = fetchFromGitHub {
-    sha256 = "0drn8wdl4mwqz84lwc7cjmc6pxj2jwpx7n2dxwzwj43ps624zhbj";
+    sha256 = "04b2wii5d0ypar8wrk0msybdq01z1r23xsvnn67bi2mffvczi5l2";
     rev = version;
     repo = "leatherman";
     owner = "puppetlabs";

From d5c0bfc2f77f76021855ad471dd38a8939233cc6 Mon Sep 17 00:00:00 2001
From: "R. RyanTM" <ryantm-bot@ryantm.com>
Date: Mon, 12 Nov 2018 12:44:44 -0800
Subject: [PATCH 1090/1129] python36Packages.netcdf4: 1.4.1 -> 1.4.2 (#49988)

Semi-automatic update generated by
https://github.com/ryantm/nixpkgs-update tools. This update was made
based on information from
https://repology.org/metapackage/python3.6-netcdf4/versions
---
 pkgs/development/python-modules/netcdf4/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/python-modules/netcdf4/default.nix b/pkgs/development/python-modules/netcdf4/default.nix
index 7e403fb9e563..f592edf2cd90 100644
--- a/pkgs/development/python-modules/netcdf4/default.nix
+++ b/pkgs/development/python-modules/netcdf4/default.nix
@@ -3,13 +3,13 @@
 }:
 buildPythonPackage rec {
   pname = "netCDF4";
-  version = "1.4.1";
+  version = "1.4.2";
 
   disabled = isPyPy;
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "d4fc65b98e348c39d082ab6b4b7f6d636b1b4e63bec016e5bca189fee5d46403";
+    sha256 = "0c0sklgrmv15ygliin8qq0hp7vanmbi74m6zpi0r1ksr0hssyd5r";
   };
 
   checkInputs = [ pytest ];

From a8ac1ef6a4b09e4b80919861523b328b86b4b9ca Mon Sep 17 00:00:00 2001
From: Renaud <c0bw3b@users.noreply.github.com>
Date: Mon, 12 Nov 2018 22:04:36 +0100
Subject: [PATCH 1091/1129] netselect: 0.3 -> 0.4

and fetch from GH repo since http://alumnit.ca/~apenwarr/netselect/ is gone
---
 pkgs/tools/networking/netselect/default.nix | 33 +++++++++++++--------
 1 file changed, 21 insertions(+), 12 deletions(-)

diff --git a/pkgs/tools/networking/netselect/default.nix b/pkgs/tools/networking/netselect/default.nix
index ef00d8602feb..702fee86922e 100644
--- a/pkgs/tools/networking/netselect/default.nix
+++ b/pkgs/tools/networking/netselect/default.nix
@@ -1,19 +1,28 @@
-{stdenv, fetchurl}:
+{ stdenv, fetchFromGitHub }:
 
-stdenv.mkDerivation {
-  name = "netselect-0.3";
+stdenv.mkDerivation rec {
+  name = "netselect-${version}";
+  version = "0.4";
 
-  src = fetchurl {
-    url = http://alumnit.ca/~apenwarr/netselect/netselect-0.3.tar.gz;
-    sha256 = "0y69z59vylj9x9nk5jqn6ihx7dkzg09gpv2w1q1rs8fmi4jr90gy";
+  src = fetchFromGitHub {
+    owner = "apenwarr";
+    repo = "netselect";
+    rev = name;
+    sha256 = "1zncyvjzllrjbdvz7c50d1xjyhs9mwqfy92ndpfc5b3mxqslw4kx";
   };
 
-  preBuild = ''
-    makeFlagsArray=(PREFIX=$out)
-    substituteInPlace Makefile \
-      --replace "-o root" "" \
-      --replace "-g root" "" \
-      --replace "4755"    "0755"
+  postPatch = ''
+    substituteInPlace netselect-apt \
+      --replace "/usr/bin/" ""
+  '';
+
+  makeFlags = [ "PREFIX=$(out)" ];
+
+  installPhase = ''
+    runHook preInstall
+    install -Dm555 -t $out/bin netselect netselect-apt
+    install -Dm444 -t $out/share/man/man1 *.1
+    runHook postInstall
   '';
 
   meta = with stdenv.lib; {

From 39a9b865b57a35911d5783ab245217f5f7098e64 Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Mon, 12 Nov 2018 19:19:55 -0200
Subject: [PATCH 1092/1129] gtk: new service giving support to GTK+
 applications

---
 nixos/modules/config/gtk/gtk-icon-cache.nix | 86 +++++++++++++++++++++
 nixos/modules/config/system-path.nix        |  4 -
 nixos/modules/module-list.nix               |  1 +
 3 files changed, 87 insertions(+), 4 deletions(-)
 create mode 100644 nixos/modules/config/gtk/gtk-icon-cache.nix

diff --git a/nixos/modules/config/gtk/gtk-icon-cache.nix b/nixos/modules/config/gtk/gtk-icon-cache.nix
new file mode 100644
index 000000000000..d4e0cf97c660
--- /dev/null
+++ b/nixos/modules/config/gtk/gtk-icon-cache.nix
@@ -0,0 +1,86 @@
+{ config, lib, pkgs, ... }:
+
+with lib;
+{
+  options = {
+    gtk.iconCache.enable = mkOption {
+      type = types.bool;
+      default = true;
+      description = ''
+        Whether to build icon theme caches for GTK+ applications.
+      '';
+    };
+  };
+
+  config = mkIf config.gtk.iconCache.enable {
+
+    # (Re)build icon theme caches
+    # ---------------------------
+    # Each icon theme has its own cache. The difficult is that many
+    # packages may contribute with icons to the same theme by installing
+    # some icons.
+    #
+    # For instance, on my current NixOS system, the following packages
+    # (among many others) have icons installed into the hicolor icon
+    # theme: hicolor-icon-theme, psensor, wpa_gui, caja, etc.
+    #
+    # As another example, the mate icon theme has icons installed by the
+    # packages mate-icon-theme, mate-settings-daemon, and libmateweather.
+    #
+    # The HighContrast icon theme also has icons from different packages,
+    # like gnome-theme-extras and meld.
+
+    # When the cache is built all of its icons has to be known. How to
+    # implement this?
+    #
+    # I think that most themes have all icons installed by only one
+    # package. On my system there are 71 themes installed. Only 3 of them
+    # have icons installed from more than one package.
+    #
+    # If the main package of the theme provides a cache, presumably most
+    # of its icons will be available to applications without running this
+    # module. But additional icons offered by other packages will not be
+    # available. Therefore I think that it is good that the main theme
+    # package installs a cache (although it does not completely fixes the
+    # situation for packages installed with nix-env).
+    #
+    # The module solution presented here keeps the cache when there is
+    # only one package contributing with icons to the theme. Otherwise it
+    # rebuilds the cache taking into account the icons provided all
+    # packages.
+
+    environment.extraSetup = ''
+      # For each icon theme directory ...
+
+      find $out/share/icons -mindepth 1 -maxdepth 1 -print0 | while read -d $'\0' themedir
+      do
+
+        # In order to build the cache, the theme dir should be
+        # writable. When the theme dir is a symbolic link to somewhere
+        # in the nix store it is not writable and it means that only
+        # one package is contributing to the theme. If it already has
+        # a cache, no rebuild is needed. Otherwise a cache has to be
+        # built, and to be able to do that we first remove the
+        # symbolic link and make a directory, and then make symbolic
+        # links from the original directory into the new one.
+
+        if [ ! -w "$themedir" -a -L "$themedir" -a ! -r "$themedir"/icon-theme.cache ]; then
+          name=$(basename "$themedir")
+          path=$(readlink -f "$themedir")
+          rm "$themedir"
+          mkdir -p "$themedir"
+          ln -s "$path"/* "$themedir"/
+        fi
+
+        # (Re)build the cache if the theme dir is writable, replacing any
+        # existing cache for the theme
+
+        if [ -w "$themedir" ]; then
+          rm -f "$themedir"/icon-theme.cache
+          ${pkgs.gtk3.out}/bin/gtk-update-icon-cache --ignore-theme-index "$themedir"
+        fi
+      done
+    '';
+  };
+
+}
diff --git a/nixos/modules/config/system-path.nix b/nixos/modules/config/system-path.nix
index 1793dc628edf..aece7aa67ac3 100644
--- a/nixos/modules/config/system-path.nix
+++ b/nixos/modules/config/system-path.nix
@@ -135,10 +135,6 @@ in
       # outputs TODO: note that the tools will often not be linked by default
       postBuild =
         ''
-          if [ -x $out/bin/gtk-update-icon-cache -a -f $out/share/icons/hicolor/index.theme ]; then
-              $out/bin/gtk-update-icon-cache $out/share/icons/hicolor
-          fi
-
           if [ -x $out/bin/glib-compile-schemas -a -w $out/share/glib-2.0/schemas ]; then
               $out/bin/glib-compile-schemas $out/share/glib-2.0/schemas
           fi
diff --git a/nixos/modules/module-list.nix b/nixos/modules/module-list.nix
index 2fbde1c451ce..5e50a105e1b2 100644
--- a/nixos/modules/module-list.nix
+++ b/nixos/modules/module-list.nix
@@ -11,6 +11,7 @@
   ./config/xdg/icons.nix
   ./config/xdg/menus.nix
   ./config/xdg/mime.nix
+  ./config/gtk/gtk-icon-cache.nix
   ./config/gnu.nix
   ./config/i18n.nix
   ./config/iproute2.nix

From 4d218e9d477e3eef738daa87cd786b62ec7fbeaf Mon Sep 17 00:00:00 2001
From: Renaud <c0bw3b@users.noreply.github.com>
Date: Mon, 12 Nov 2018 23:29:42 +0100
Subject: [PATCH 1093/1129] minixml: 2.9 -> 2.12

---
 pkgs/development/libraries/minixml/default.nix | 16 ++++++++++------
 1 file changed, 10 insertions(+), 6 deletions(-)

diff --git a/pkgs/development/libraries/minixml/default.nix b/pkgs/development/libraries/minixml/default.nix
index 6779268dbdc1..c2a61ec6fc1c 100644
--- a/pkgs/development/libraries/minixml/default.nix
+++ b/pkgs/development/libraries/minixml/default.nix
@@ -1,14 +1,18 @@
-{ stdenv, fetchurl }:
+{ stdenv, fetchFromGitHub }:
 
-stdenv.mkDerivation  rec {
+stdenv.mkDerivation rec {
   name = "mxml-${version}";
-  version = "2.9";
+  version = "2.12";
 
-  src = fetchurl {
-    url = "http://www.msweet.org/files/project3/${name}.tar.gz";
-    sha256 = "14pzhlfidj5v1qbxy7a59yn4jz9pnjrs2zwalz228jsq7ijm9vfd";
+  src = fetchFromGitHub {
+    owner = "michaelrsweet";
+    repo = "mxml";
+    rev = "v${version}";
+    sha256 = "1m8z503vnfpm576gjpp1h7zmx09n50if2i28v24yx80j820ip94s";
   };
 
+  enableParallelBuilding = true;
+
   meta = with stdenv.lib; {
     description = "A small XML library";
     homepage = https://www.msweet.org/mxml/;

From c3bae60e23725ef885ebc6bdf552b308417be9ff Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 2 Oct 2018 18:43:19 -0300
Subject: [PATCH 1094/1129] efl: build GTK icon cache

---
 pkgs/desktops/enlightenment/efl.nix | 7 +++++--
 1 file changed, 5 insertions(+), 2 deletions(-)

diff --git a/pkgs/desktops/enlightenment/efl.nix b/pkgs/desktops/enlightenment/efl.nix
index bc58302cb20f..93d80d763524 100644
--- a/pkgs/desktops/enlightenment/efl.nix
+++ b/pkgs/desktops/enlightenment/efl.nix
@@ -3,7 +3,7 @@
 , libsndfile, xorg, libdrm, libxkbcommon, udev, utillinux, bullet, luajit
 , python27Packages, openjpeg, doxygen, expat, harfbuzz, jbig2dec, librsvg
 , dbus, alsaLib, poppler, ghostscript, libraw, libspectre, xineLib, libwebp
-, curl, libinput, systemd, mesa_noglu, writeText
+, curl, libinput, systemd, mesa_noglu, writeText, gtk3
 }:
 
 stdenv.mkDerivation rec {
@@ -15,7 +15,7 @@ stdenv.mkDerivation rec {
     sha256 = "0a5907h896pvpix7a6idc2fspzy6d78xrzf84k8y9fyvnd14nxs4";
   };
 
-  nativeBuildInputs = [ pkgconfig ];
+  nativeBuildInputs = [ pkgconfig gtk3 ];
 
   buildInputs = [ openssl zlib lz4 freetype fontconfig SDL libGL mesa_noglu
     giflib libpng libtiff glib gst_all_1.gstreamer gst_all_1.gst-plugins-base gst_all_1.gst-plugins-good
@@ -71,6 +71,9 @@ stdenv.mkDerivation rec {
     modules=$(for i in "$out/include/"*/; do printf ' -I''${includedir}/'`basename $i`; done)
     substituteInPlace "$out/lib/pkgconfig/efl.pc" --replace 'Cflags: -I''${includedir}/efl-1' \
       'Cflags: -I''${includedir}/eina-1/eina'"$modules"
+
+    # build icon cache
+    gtk-update-icon-cache "$out"/share/icons/Enlightenment-X
   '';
 
   # EFL applications depend on libcurl, although it is linked at

From 83efc39766f742d840be24cbd6133ce11c08080c Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 2 Oct 2018 18:44:29 -0300
Subject: [PATCH 1095/1129] gnome-themes-extra: build GTK icon cache

---
 pkgs/desktops/gnome-3/core/gnome-themes-extra/default.nix | 4 ++++
 1 file changed, 4 insertions(+)

diff --git a/pkgs/desktops/gnome-3/core/gnome-themes-extra/default.nix b/pkgs/desktops/gnome-3/core/gnome-themes-extra/default.nix
index 0503d3baa6c1..8c0ae6da3182 100644
--- a/pkgs/desktops/gnome-3/core/gnome-themes-extra/default.nix
+++ b/pkgs/desktops/gnome-3/core/gnome-themes-extra/default.nix
@@ -21,6 +21,10 @@ in stdenv.mkDerivation rec {
   nativeBuildInputs = [ pkgconfig intltool ];
   buildInputs = [ gtk3 librsvg pango atk gtk2 gdk_pixbuf gnome3.defaultIconTheme ];
 
+  postFixup = ''
+    gtk-update-icon-cache "$out"/share/icons/HighContrast
+  '';
+
   meta = with stdenv.lib; {
     platforms = platforms.linux;
     maintainers = gnome3.maintainers;

From 18d31c2d2d2fdedf42f21e1df7b750ae8e6550be Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 2 Oct 2018 18:45:20 -0300
Subject: [PATCH 1096/1129] mate-icon-theme-faenza: build GTK icon cache

---
 .../desktops/mate/mate-icon-theme-faenza/default.nix | 12 +++++++++---
 1 file changed, 9 insertions(+), 3 deletions(-)

diff --git a/pkgs/desktops/mate/mate-icon-theme-faenza/default.nix b/pkgs/desktops/mate/mate-icon-theme-faenza/default.nix
index 2d868d2e0821..03f8c62c448d 100644
--- a/pkgs/desktops/mate/mate-icon-theme-faenza/default.nix
+++ b/pkgs/desktops/mate/mate-icon-theme-faenza/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, autoreconfHook, mate, hicolor-icon-theme }:
+{ stdenv, fetchurl, autoreconfHook, gtk3, mate, hicolor-icon-theme }:
 
 stdenv.mkDerivation rec {
   name = "mate-icon-theme-faenza-${version}";
@@ -9,10 +9,16 @@ stdenv.mkDerivation rec {
     sha256 = "000vr9cnbl2qlysf2gyg1lsjirqdzmwrnh6d3hyrsfc0r2vh4wna";
   };
 
-  nativeBuildInputs = [ autoreconfHook ];
+  nativeBuildInputs = [ autoreconfHook gtk3 ];
 
   buildInputs = [ mate.mate-icon-theme hicolor-icon-theme ];
-  
+
+  postInstall = ''
+    for theme in "$out"/share/icons/*; do
+      gtk-update-icon-cache "$theme"
+    done
+  '';
+
   meta = {
     description = "Faenza icon theme from MATE";
     homepage = http://mate-desktop.org;

From a49fbb6a059caca41a49da7c84e484b9bc17d8fb Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Jos=C3=A9=20Romildo=20Malaquias?= <malaquias@gmail.com>
Date: Tue, 2 Oct 2018 18:46:21 -0300
Subject: [PATCH 1097/1129] mate-themes: build GTK icon cache

---
 pkgs/desktops/mate/mate-themes/default.nix | 10 +++++++---
 1 file changed, 7 insertions(+), 3 deletions(-)

diff --git a/pkgs/desktops/mate/mate-themes/default.nix b/pkgs/desktops/mate/mate-themes/default.nix
index 44d07231d2eb..58feb32cfa8c 100644
--- a/pkgs/desktops/mate/mate-themes/default.nix
+++ b/pkgs/desktops/mate/mate-themes/default.nix
@@ -1,5 +1,5 @@
-{ stdenv, fetchurl, pkgconfig, intltool, mate, gtk2, gtk_engines,
-  gtk-engine-murrine, gdk_pixbuf, librsvg }:
+{ stdenv, fetchurl, pkgconfig, intltool, mate, gtk2, gtk3,
+  gtk_engines, gtk-engine-murrine, gdk_pixbuf, librsvg }:
 
 stdenv.mkDerivation rec {
   name = "mate-themes-${version}";
@@ -10,12 +10,16 @@ stdenv.mkDerivation rec {
     sha256 = "0538bw8qismp16ymxbjk0ww7yjw1ch5v3f3d4vib3770xvgmmcfm";
   };
 
-  nativeBuildInputs = [ pkgconfig intltool ];
+  nativeBuildInputs = [ pkgconfig intltool gtk3 ];
 
   buildInputs = [ mate.mate-icon-theme gtk2 gtk_engines gdk_pixbuf librsvg ];
 
   propagatedUserEnvPkgs = [ gtk-engine-murrine ];
 
+  postInstall = ''
+    gtk-update-icon-cache "$out"/share/icons/ContrastHigh
+  '';
+
   meta = {
     description = "A set of themes from MATE";
     homepage = http://mate-desktop.org;

From 432c28afc2e822ecac76a14446c1adb126295aac Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?Niklas=20Hamb=C3=BCchen?= <mail@nh2.me>
Date: Tue, 13 Nov 2018 02:04:59 +0100
Subject: [PATCH 1098/1129] glibc: Add helpful comment.

Intended to avoid contributor confusion as in #50231.
---
 pkgs/development/libraries/glibc/default.nix | 6 ++++++
 1 file changed, 6 insertions(+)

diff --git a/pkgs/development/libraries/glibc/default.nix b/pkgs/development/libraries/glibc/default.nix
index 8b17ff9e5585..8a450959c6b2 100644
--- a/pkgs/development/libraries/glibc/default.nix
+++ b/pkgs/development/libraries/glibc/default.nix
@@ -10,6 +10,12 @@ callPackage ./common.nix { inherit stdenv; } {
 
     inherit withLinuxHeaders profilingLibraries installLocales withGd;
 
+    # Note:
+    # Things you write here override, and do not add to,
+    # the values in `common.nix`.
+    # (For example, if you define `patches = [...]` here, it will
+    # override the patches in `common.nix`.)
+
     NIX_NO_SELF_RPATH = true;
 
     postConfigure = ''

From 5b4044ab55a544c5e690e174619aae07c1ef06f2 Mon Sep 17 00:00:00 2001
From: Orivej Desh <orivej@gmx.fr>
Date: Tue, 13 Nov 2018 01:59:55 +0000
Subject: [PATCH 1099/1129] flex_2_6_1: delete in favor of flex 2.6.4 (#50292)

---
 pkgs/servers/nas/default.nix    | 4 ++--
 pkgs/top-level/all-packages.nix | 1 -
 2 files changed, 2 insertions(+), 3 deletions(-)

diff --git a/pkgs/servers/nas/default.nix b/pkgs/servers/nas/default.nix
index 1dba428e0ae9..9b8402ec0e08 100644
--- a/pkgs/servers/nas/default.nix
+++ b/pkgs/servers/nas/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, fetchurl, imake, bison, flex_2_6_1, gccmakedep
+{ stdenv, fetchurl, imake, bison, flex, gccmakedep
 , xproto, libXau, libXt, libXext, libXaw, libXpm, xorgcffiles }:
 
 let
@@ -12,7 +12,7 @@ in stdenv.mkDerivation {
     sha256 = "17dk0ckm6mp1ajc0cd6bwyi638ynw2f6bhbn7gynrs0wfmiyldng";
   };
 
-  nativeBuildInputs = [ imake bison flex_2_6_1 gccmakedep ];
+  nativeBuildInputs = [ imake bison flex gccmakedep ];
 
   buildInputs = [ xproto libXau libXt libXext libXaw libXpm ];
 
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index ef28e8096982..f857cc0183df 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -8510,7 +8510,6 @@ with pkgs;
   jdepend = callPackage ../development/tools/analysis/jdepend { };
 
   flex_2_5_35 = callPackage ../development/tools/parsing/flex/2.5.35.nix { };
-  flex_2_6_1 = callPackage ../development/tools/parsing/flex/2.6.1.nix { };
   flex = callPackage ../development/tools/parsing/flex { };
 
   flexcpp = callPackage ../development/tools/parsing/flexc++ { };

From d7691e0c0b52600c00395601816d891ceab647ef Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Fri, 27 Apr 2018 22:29:04 +0800
Subject: [PATCH 1100/1129] pythonPackages.bt_proximity: init at 0.0.20180217

---
 .../python-modules/bt-proximity/default.nix   | 27 +++++++++++++++++++
 pkgs/top-level/python-packages.nix            |  2 ++
 2 files changed, 29 insertions(+)
 create mode 100644 pkgs/development/python-modules/bt-proximity/default.nix

diff --git a/pkgs/development/python-modules/bt-proximity/default.nix b/pkgs/development/python-modules/bt-proximity/default.nix
new file mode 100644
index 000000000000..dfd4d8f0cbf1
--- /dev/null
+++ b/pkgs/development/python-modules/bt-proximity/default.nix
@@ -0,0 +1,27 @@
+{ stdenv, buildPythonPackage, fetchFromGitHub
+, pybluez }:
+
+buildPythonPackage rec {
+  pname = "bt-proximity";
+  version = "0.0.20180217";
+
+  # pypi only has a pre-compiled wheel and no sources
+  src = fetchFromGitHub {
+    owner  = "FrederikBolding";
+    repo   = "bluetooth-proximity";
+    rev    = "463bade8a9080b47f09bf4a47830b31c69c5dffd";
+    sha256 = "0anfh90cj3c2g7zqrjvq0d6dzpb4hjl6gk8zw0r349j2zw9i4h7y";
+  };
+
+  propagatedBuildInputs = [ pybluez ];
+
+  # there are no tests
+  doCheck = false;
+
+  meta = with stdenv.lib; {
+    description = "Bluetooth Proximity Detection using Python";
+    homepage = https://github.com/FrederikBolding/bluetooth-proximity;
+    maintainers = with maintainers; [ peterhoeg ];
+    license = licenses.asl20;
+  };
+}
diff --git a/pkgs/top-level/python-packages.nix b/pkgs/top-level/python-packages.nix
index 28baa2dfbe45..b8b46dec2f29 100644
--- a/pkgs/top-level/python-packages.nix
+++ b/pkgs/top-level/python-packages.nix
@@ -272,6 +272,8 @@ in {
 
   browsermob-proxy = disabledIf isPy3k (callPackage ../development/python-modules/browsermob-proxy {});
 
+  bt_proximity = callPackage ../development/python-modules/bt-proximity { };
+
   bugseverywhere = callPackage ../applications/version-management/bugseverywhere {};
 
   cachecontrol = callPackage ../development/python-modules/cachecontrol { };

From 74b63f26f010a0022df7ca301d50745cf3ffa455 Mon Sep 17 00:00:00 2001
From: Peter Hoeg <peter@hoeg.com>
Date: Fri, 27 Apr 2018 22:29:25 +0800
Subject: [PATCH 1101/1129] home-assistant: use bt_proximity

---
 pkgs/servers/home-assistant/component-packages.nix | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/pkgs/servers/home-assistant/component-packages.nix b/pkgs/servers/home-assistant/component-packages.nix
index 76e639438ff3..399f6a205817 100644
--- a/pkgs/servers/home-assistant/component-packages.nix
+++ b/pkgs/servers/home-assistant/component-packages.nix
@@ -326,7 +326,7 @@
     "device_tracker.automatic" = ps: with ps; [ aiohttp-cors ];
     "device_tracker.bbox" = ps: with ps; [  ];
     "device_tracker.bluetooth_le_tracker" = ps: with ps; [  ];
-    "device_tracker.bluetooth_tracker" = ps: with ps; [  ];
+    "device_tracker.bluetooth_tracker" = ps: with ps; [ bt_proximity ];
     "device_tracker.bmw_connected_drive" = ps: with ps; [  ];
     "device_tracker.bt_home_hub_5" = ps: with ps; [  ];
     "device_tracker.cisco_ios" = ps: with ps; [ pexpect ];

From 237285295764fb063ec1ca509c36b17c4990eeb4 Mon Sep 17 00:00:00 2001
From: Orivej Desh <orivej@gmx.fr>
Date: Tue, 13 Nov 2018 03:32:19 +0000
Subject: [PATCH 1102/1129] flex_2_5_35: replace with flex 2.6.4 in coprthr,
 gradm, maude, scotch

---
 pkgs/development/interpreters/maude/default.nix |  5 +++++
 pkgs/top-level/all-packages.nix                 | 17 ++++-------------
 2 files changed, 9 insertions(+), 13 deletions(-)

diff --git a/pkgs/development/interpreters/maude/default.nix b/pkgs/development/interpreters/maude/default.nix
index 9ead7176d4ed..30013946886b 100644
--- a/pkgs/development/interpreters/maude/default.nix
+++ b/pkgs/development/interpreters/maude/default.nix
@@ -46,6 +46,11 @@ stdenv.mkDerivation rec {
     install -D -m 444 full-maude.maude $out/share/maude/full-maude.maude
   '';
 
+  # bison -dv surface.yy -o surface.c
+  # mv surface.c surface.cc
+  # mv: cannot stat 'surface.c': No such file or directory
+  enableParallelBuilding = false;
+
   meta = {
     homepage = http://maude.cs.illinois.edu/;
     description = "High-level specification language";
diff --git a/pkgs/top-level/all-packages.nix b/pkgs/top-level/all-packages.nix
index f857cc0183df..d8477449e2ff 100644
--- a/pkgs/top-level/all-packages.nix
+++ b/pkgs/top-level/all-packages.nix
@@ -1182,9 +1182,7 @@ with pkgs;
 
   clipster = callPackage ../tools/misc/clipster { };
 
-  coprthr = callPackage ../development/libraries/coprthr {
-    flex = flex_2_5_35;
-  };
+  coprthr = callPackage ../development/libraries/coprthr { };
 
   cplex = callPackage ../applications/science/math/cplex { releasePath = config.cplex.releasePath or null; };
 
@@ -7721,10 +7719,7 @@ with pkgs;
 
   lush2 = callPackage ../development/interpreters/lush {};
 
-  maude = callPackage ../development/interpreters/maude {
-    bison = bison2;
-    flex = flex_2_5_35;
-  };
+  maude = callPackage ../development/interpreters/maude { };
 
   mesos = callPackage ../applications/networking/cluster/mesos {
     sasl = cyrus_sasl;
@@ -14184,9 +14179,7 @@ with pkgs;
 
   gpu-switch = callPackage ../os-specific/linux/gpu-switch { };
 
-  gradm = callPackage ../os-specific/linux/gradm {
-    flex = flex_2_5_35;
-  };
+  gradm = callPackage ../os-specific/linux/gradm { };
 
   hd-idle = callPackage ../os-specific/linux/hd-idle { };
 
@@ -21766,9 +21759,7 @@ with pkgs;
 
   scilab-bin = callPackage ../applications/science/math/scilab-bin {};
 
-  scotch = callPackage ../applications/science/math/scotch {
-    flex = flex_2_5_35;
-  };
+  scotch = callPackage ../applications/science/math/scotch { };
 
   msieve = callPackage ../applications/science/math/msieve { };
 

From a965921af95859ec78f8f5b59f94e78a87d2d57b Mon Sep 17 00:00:00 2001
From: Ding Xiang Fei <dingxiangfei2009@gmail.com>
Date: Sun, 11 Nov 2018 00:07:48 +0800
Subject: [PATCH 1103/1129] allow cloud-init to support creating btrfs
 partitions

---
 nixos/modules/services/system/cloud-init.nix | 27 +++++++++++++++++++-
 1 file changed, 26 insertions(+), 1 deletion(-)

diff --git a/nixos/modules/services/system/cloud-init.nix b/nixos/modules/services/system/cloud-init.nix
index 1a700828ce77..59f57307098b 100644
--- a/nixos/modules/services/system/cloud-init.nix
+++ b/nixos/modules/services/system/cloud-init.nix
@@ -3,7 +3,16 @@
 with lib;
 
 let cfg = config.services.cloud-init;
-    path = with pkgs; [ cloud-init nettools utillinux e2fsprogs shadow openssh iproute ];
+    path = with pkgs; [
+      cloud-init
+      iproute
+      nettools
+      openssh
+      shadow
+      utillinux
+    ] ++ optional config.services.cloud-init.btrfs btrfs-progs
+      ++ optional config.services.cloud-init.ext4 e2fsprogs
+    ;
 in
 {
   options = {
@@ -29,6 +38,22 @@ in
         '';
       };
 
+      btrfs = mkOption {
+        type = types.bool;
+        default = false;
+        description = ''
+          Allow the cloud-init service to operate `btrfs` filesystem.
+        '';
+      };
+
+      ext4 = mkOption {
+        type = types.bool;
+        default = true;
+        description = ''
+          Allow the cloud-init service to operate `ext4` filesystem.
+        '';
+      };
+
       config = mkOption {
         type = types.str;
         default = ''

From a5c74762cbe96149673be60b0fcd51632642265e Mon Sep 17 00:00:00 2001
From: =?UTF-8?q?J=C3=B6rg=20Thalheim?= <joerg@thalheim.io>
Date: Tue, 13 Nov 2018 10:28:40 +0000
Subject: [PATCH 1104/1129] nixos/cloud-init: add enable suffix to ext4/btrfs

Makes the optional more self-describing and allows future extensions
---
 nixos/modules/services/system/cloud-init.nix | 10 ++++------
 1 file changed, 4 insertions(+), 6 deletions(-)

diff --git a/nixos/modules/services/system/cloud-init.nix b/nixos/modules/services/system/cloud-init.nix
index 59f57307098b..f22bd45dfebc 100644
--- a/nixos/modules/services/system/cloud-init.nix
+++ b/nixos/modules/services/system/cloud-init.nix
@@ -10,15 +10,13 @@ let cfg = config.services.cloud-init;
       openssh
       shadow
       utillinux
-    ] ++ optional config.services.cloud-init.btrfs btrfs-progs
-      ++ optional config.services.cloud-init.ext4 e2fsprogs
+    ] ++ optional cfg.btrfs.enable btrfs-progs
+      ++ optional cfg.ext4.enable e2fsprogs
     ;
 in
 {
   options = {
-
     services.cloud-init = {
-
       enable = mkOption {
         type = types.bool;
         default = false;
@@ -38,7 +36,7 @@ in
         '';
       };
 
-      btrfs = mkOption {
+      btrfs.enable = mkOption {
         type = types.bool;
         default = false;
         description = ''
@@ -46,7 +44,7 @@ in
         '';
       };
 
-      ext4 = mkOption {
+      ext4.enable = mkOption {
         type = types.bool;
         default = true;
         description = ''

From e62db105c4bc1837cff46702d760c3e04403b6b5 Mon Sep 17 00:00:00 2001
From: zimbatm <zimbatm@zimbatm.com>
Date: Tue, 13 Nov 2018 12:26:13 +0100
Subject: [PATCH 1105/1129] libredirect: specify libName

reduces a bit of duplication and can also be used from the outside:

   export LD_PRELOAD=${libredirect}/lib/${libredirect.libName}
---
 pkgs/build-support/libredirect/default.nix | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/pkgs/build-support/libredirect/default.nix b/pkgs/build-support/libredirect/default.nix
index 09a3da6729a9..e92945a4030c 100644
--- a/pkgs/build-support/libredirect/default.nix
+++ b/pkgs/build-support/libredirect/default.nix
@@ -8,11 +8,11 @@ stdenv.mkDerivation {
     cp ${./test.c} test.c
   '';
 
-  shlibext = stdenv.targetPlatform.extensions.sharedLibrary;
+  libName = "libredirect" + stdenv.targetPlatform.extensions.sharedLibrary;
 
   buildPhase = ''
     $CC -Wall -std=c99 -O3 -shared libredirect.c \
-      -o "libredirect$shlibext" -fPIC -ldl
+      -o "$libName" -fPIC -ldl
 
     if [ -n "$doInstallCheck" ]; then
       $CC -Wall -std=c99 -O3 test.c -o test
@@ -20,18 +20,18 @@ stdenv.mkDerivation {
   '';
 
   installPhase = ''
-    install -vD "libredirect$shlibext" "$out/lib/libredirect$shlibext"
+    install -vD "$libName" "$out/lib/$libName"
   '';
 
   doInstallCheck = true;
 
   installCheckPhase = if stdenv.isDarwin then ''
     NIX_REDIRECTS="/foo/bar/test=${coreutils}/bin/true" \
-    DYLD_INSERT_LIBRARIES="$out/lib/libredirect$shlibext" \
+    DYLD_INSERT_LIBRARIES="$out/lib/$libName" \
     DYLD_FORCE_FLAT_NAMESPACE=1 ./test
   '' else ''
     NIX_REDIRECTS="/foo/bar/test=${coreutils}/bin/true" \
-    LD_PRELOAD="$out/lib/libredirect$shlibext" ./test
+    LD_PRELOAD="$out/lib/$libName" ./test
   '';
 
   meta = {

From 245f25586b590fe013c7fb579c228c382b806e0b Mon Sep 17 00:00:00 2001
From: Matthew Bauer <mjbauer95@gmail.com>
Date: Sat, 10 Nov 2018 13:47:09 -0600
Subject: [PATCH 1106/1129] libxml2: only use static output with both shared &
 static
MIME-Version: 1.0
Content-Type: text/plain; charset=UTF-8
Content-Transfer-Encoding: 8bit

The static output should only get created when both enableShared and
enableStatic are set. Otherwise there would be libraries missing from
the main output when enableShared = false & enableStatic = true. This
can cause issues in some packages that don’t know about libxml2’s
static output.

(cherry picked from commit 2bd6bb0a4bf21005d8877c735709cd21d22e05bd)
(cherry picked from commit 1421a39c1e62584d346185ad49484b11b7703dc1)
---
 pkgs/development/libraries/libxml2/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/libxml2/default.nix b/pkgs/development/libraries/libxml2/default.nix
index 36606999f534..54ed569f666f 100644
--- a/pkgs/development/libraries/libxml2/default.nix
+++ b/pkgs/development/libraries/libxml2/default.nix
@@ -33,7 +33,7 @@ in stdenv.mkDerivation rec {
 
   outputs = [ "bin" "dev" "out" "man" "doc" ]
     ++ lib.optional pythonSupport "py"
-    ++ lib.optional enableStatic "static";
+    ++ lib.optional (enableStatic && enableShared) "static";
   propagatedBuildOutputs = "out bin" + lib.optionalString pythonSupport " py";
 
   buildInputs = lib.optional pythonSupport python
@@ -67,7 +67,7 @@ in stdenv.mkDerivation rec {
     moveToOutput bin/xml2-config "$dev"
     moveToOutput lib/xml2Conf.sh "$dev"
     moveToOutput share/man/man1 "$bin"
-  '' + lib.optionalString enableStatic ''
+  '' + lib.optionalString (enableStatic && enableShared) ''
     moveToOutput lib/libxml2.a "$static"
   '';
 

From 2ae0b2e19d32c6b98ef2da5f88fc9843ec7b55fd Mon Sep 17 00:00:00 2001
From: nyanloutre <paul@nyanlout.re>
Date: Tue, 13 Nov 2018 14:12:50 +0100
Subject: [PATCH 1107/1129] jackett: 0.10.420 -> 0.10.434

---
 pkgs/servers/jackett/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/servers/jackett/default.nix b/pkgs/servers/jackett/default.nix
index bb8732f3aaec..e23c981e0c1f 100644
--- a/pkgs/servers/jackett/default.nix
+++ b/pkgs/servers/jackett/default.nix
@@ -2,11 +2,11 @@
 
 stdenv.mkDerivation rec {
   name = "jackett-${version}";
-  version = "0.10.420";
+  version = "0.10.434";
 
   src = fetchurl {
     url = "https://github.com/Jackett/Jackett/releases/download/v${version}/Jackett.Binaries.Mono.tar.gz";
-    sha256 = "192nj5k3ad8k4xdipr052sb3y3hi9csmyhjadlyy6xl8m2zz6win";
+    sha256 = "1vnkppmv7mw2p9bjcfmfxg66g02dq0020ad4z07gbp4dvixpzsnm";
   };
 
   buildInputs = [ makeWrapper ];

From 032d610aedca15e8790ed20d3fd01a9dee6d4b8e Mon Sep 17 00:00:00 2001
From: Peter Simons <simons@cryp.to>
Date: Tue, 13 Nov 2018 02:30:39 +0100
Subject: [PATCH 1108/1129] hackage-packages.nix: automatic Haskell package set
 update

This update was generated by hackage2nix v2.11.1-5-g1b0c0c3 from Hackage revision
https://github.com/commercialhaskell/all-cabal-hashes/commit/2a8760e4bcbc850c966cb4caaf212b34e390e84d.
---
 .../haskell-modules/hackage-packages.nix      | 181 ++++++++++++------
 1 file changed, 127 insertions(+), 54 deletions(-)

diff --git a/pkgs/development/haskell-modules/hackage-packages.nix b/pkgs/development/haskell-modules/hackage-packages.nix
index 0962443c79c5..5590a48dfeba 100644
--- a/pkgs/development/haskell-modules/hackage-packages.nix
+++ b/pkgs/development/haskell-modules/hackage-packages.nix
@@ -63244,8 +63244,8 @@ self: {
        pname = "diagrams-pgf";
        version = "1.4";
        sha256 = "11v63sjpf9029y7cvbhlq0jp8304p1hf15kyshvzmg9yijy1z3q6";
-       revision = "1";
-       editedCabalFile = "1f3mphrpzlribv2zhy6i8slcbph5ncvqaa3s58ghjn7pq2fa46l3";
+       revision = "2";
+       editedCabalFile = "1cyxi747vpzr1ryczmcav9dahcnkrykpbi1q8zvql3m9s24ikskg";
        libraryHaskellDepends = [
          base bytestring bytestring-builder colour containers diagrams-core
          diagrams-lib directory filepath hashable JuicyPixels mtl
@@ -73713,28 +73713,29 @@ self: {
 
   "extensible-effects-concurrent" = callPackage
     ({ mkDerivation, async, base, containers, data-default, deepseq
-     , directory, enclosed-exceptions, extensible-effects, filepath
-     , HUnit, lens, monad-control, mtl, parallel, process, QuickCheck
-     , stm, tasty, tasty-discover, tasty-hunit, time, transformers-base
+     , directory, exceptions, extensible-effects, filepath, HUnit, lens
+     , monad-control, mtl, parallel, process, QuickCheck
+     , safe-exceptions, stm, tasty, tasty-discover, tasty-hunit, time
+     , transformers-base
      }:
      mkDerivation {
        pname = "extensible-effects-concurrent";
-       version = "0.11.1";
-       sha256 = "0jpf8rp2dfa6ggvv076fyipbyr97dq3lxwrxdbffsnjviz6232wd";
+       version = "0.12.0";
+       sha256 = "1kli2byyb9vrgrd912yh0fkiv65qn31qxjh5fmq85kcxqvgvna3c";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
-         async base containers data-default deepseq enclosed-exceptions
+         async base containers data-default deepseq exceptions
          extensible-effects filepath lens monad-control mtl parallel process
-         QuickCheck stm time transformers-base
+         QuickCheck safe-exceptions stm time transformers-base
        ];
        executableHaskellDepends = [
          base data-default deepseq directory extensible-effects filepath
          lens
        ];
        testHaskellDepends = [
-         base containers data-default deepseq extensible-effects HUnit lens
-         QuickCheck stm tasty tasty-discover tasty-hunit
+         async base containers data-default deepseq extensible-effects HUnit
+         lens QuickCheck stm tasty tasty-discover tasty-hunit
        ];
        testToolDepends = [ tasty-discover ];
        description = "Message passing concurrency as extensible-effect";
@@ -77515,8 +77516,8 @@ self: {
        pname = "flock";
        version = "0.3.1.8";
        sha256 = "1g1gf7qnlqkl57h28nzxnbzj7v2h73czffp5y7s7jm9vbihcwd4n";
-       revision = "4";
-       editedCabalFile = "02jqldkxg366v0gljiqg7zv5sd3zhswabcvg5xx6h8ns67kn3my6";
+       revision = "5";
+       editedCabalFile = "19jqvzacd1639r8c8vs2fdng188mjg8i76x0fghda71d7a2jgp97";
        libraryHaskellDepends = [
          base lifted-base monad-control transformers unix
        ];
@@ -80967,8 +80968,8 @@ self: {
      }:
      mkDerivation {
        pname = "funflow";
-       version = "1.3.2";
-       sha256 = "01r1l1r8qg6w7wfcbs7qwxy22b7rd1cdixds425ynp9h0246lrmf";
+       version = "1.4.0";
+       sha256 = "1pd690y41bf6lrk6bzl730hvpaaazya927nslwp8ii5rcn6wjx7f";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -88099,8 +88100,8 @@ self: {
      }:
      mkDerivation {
        pname = "gloss-export";
-       version = "0.1.0.1";
-       sha256 = "0f81fncs7xirnwxkidbiikcxaj82svn2cgwdhgg588sk28rbd0vz";
+       version = "0.1.0.2";
+       sha256 = "0i2x1bbygacrgvi9rvmpq0ddi24vh8dza6hisvif708a8yh6plpr";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -103763,6 +103764,8 @@ self: {
        pname = "hedgehog-fn";
        version = "0.6";
        sha256 = "0xi1y2cv2kkyxav261qaw9a4r4q8ng91187bdwi4rqlpp9zvc0pv";
+       revision = "1";
+       editedCabalFile = "19v7amg8l6s1gadnya8nxkcbi0vd3wqc7h6gvqvs099qaqm7zbb1";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -108420,8 +108423,8 @@ self: {
      }:
      mkDerivation {
        pname = "hmm-hmatrix";
-       version = "0.1";
-       sha256 = "1ww2hxy9s9d2mywf5v5ka5fac9105ir3frm9vafgw2ydq64rdivx";
+       version = "0.1.0.1";
+       sha256 = "00fka84m5id19vb08kscr91fivlmxflz99nmziki721bqrgjx0n5";
        libraryHaskellDepends = [
          array base containers deepseq explicit-exception hmatrix lazy-csv
          non-empty random semigroups transformers utility-ht
@@ -118648,8 +118651,8 @@ self: {
      }:
      mkDerivation {
        pname = "hw-simd";
-       version = "0.1.1.2";
-       sha256 = "0jcd6clhcqdmkcvhvf68xldgmx4n1wp333438ypbwk2mwp1q559l";
+       version = "0.1.1.3";
+       sha256 = "0wryx86ycpcyw1dyp2ks1j0rk7pk6yqihmwsa1sij1pf36qdkbrq";
        libraryHaskellDepends = [
          base bits-extra bytestring deepseq hw-bits hw-prim hw-rankselect
          hw-rankselect-base vector
@@ -134942,8 +134945,8 @@ self: {
      }:
      mkDerivation {
        pname = "limp";
-       version = "0.3.2.2";
-       sha256 = "0dx2xgkrqda8qwfiwm3pd5lfnfw5sxf1qdz5sbp54jf6516m2c4w";
+       version = "0.3.2.3";
+       sha256 = "1jshdnvrgjpgcqzl7c3q019k6iipk3v19waqxl43va60wfkj4iw8";
        libraryHaskellDepends = [ base containers ];
        testHaskellDepends = [
          base containers QuickCheck tasty tasty-quickcheck tasty-th
@@ -134959,8 +134962,8 @@ self: {
      }:
      mkDerivation {
        pname = "limp-cbc";
-       version = "0.3.2.2";
-       sha256 = "0v637hrm980iqj3bh9p0ixirkhg3dwq7i36pff3n1fiav516qbww";
+       version = "0.3.2.3";
+       sha256 = "1fdjhifnx2yhfbzjs5lsaa8vn5ps4li5j3id8sjj7fwj4yn4m453";
        libraryHaskellDepends = [ base containers limp vector ];
        libraryToolDepends = [ c2hs ];
        testHaskellDepends = [
@@ -136702,6 +136705,27 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "llvm-hs-pretty_0_6_0_0" = callPackage
+    ({ mkDerivation, array, base, bytestring, directory, filepath
+     , llvm-hs, llvm-hs-pure, mtl, prettyprinter, tasty, tasty-golden
+     , tasty-hspec, tasty-hunit, text, transformers
+     }:
+     mkDerivation {
+       pname = "llvm-hs-pretty";
+       version = "0.6.0.0";
+       sha256 = "19p6k3gri7zhxhhr6rip177zh08fcw8ld7cwqv83ynvr4s9campz";
+       libraryHaskellDepends = [
+         array base bytestring llvm-hs-pure prettyprinter text
+       ];
+       testHaskellDepends = [
+         base directory filepath llvm-hs llvm-hs-pure mtl tasty tasty-golden
+         tasty-hspec tasty-hunit text transformers
+       ];
+       description = "A pretty printer for LLVM IR";
+       license = stdenv.lib.licenses.mit;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "llvm-hs-pure" = callPackage
     ({ mkDerivation, attoparsec, base, bytestring, containers, fail
      , mtl, tasty, tasty-hunit, tasty-quickcheck, template-haskell
@@ -138424,8 +138448,8 @@ self: {
      }:
      mkDerivation {
        pname = "lsp-test";
-       version = "0.4.0.0";
-       sha256 = "0kiddzb7lwwdf96jz4ghvjnwr2hf9jiv8vjjlxwm76k3ab4wx09c";
+       version = "0.5.0.0";
+       sha256 = "054hs4wpnvwa8ikp8faa4xnx5fszywsxw4m3ci6kmvrk3i8frh2z";
        libraryHaskellDepends = [
          aeson aeson-pretty ansi-terminal base bytestring conduit
          conduit-parse containers data-default Diff directory filepath
@@ -156407,9 +156431,6 @@ self: {
        pname = "opencv";
        version = "0.0.2.1";
        sha256 = "1bwl3csl2bsgz32i7s59hb25hxj05vn9g3fa8xix9klz8kyrzam1";
-       configureFlags = [
-         "--with-gcc=${stdenv.cc}/bin/c++" "--with-ld=${stdenv.cc}/bin/c++"
-       ];
        setupHaskellDepends = [ base Cabal ];
        libraryHaskellDepends = [
          aeson base base64-bytestring bindings-DSL bytestring containers
@@ -190482,6 +190503,32 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
+  "sh2md" = callPackage
+    ({ mkDerivation, base, containers, Hclip, optparse-applicative
+     , process, text, transformers, unix
+     }:
+     mkDerivation {
+       pname = "sh2md";
+       version = "0.1.0.0";
+       sha256 = "1yw47xzfi7yappsx2ra1a75xdxq9wfn7wrdnxflf6s9bzj9bhc1g";
+       isLibrary = true;
+       isExecutable = true;
+       libraryHaskellDepends = [
+         base containers Hclip optparse-applicative process text
+         transformers unix
+       ];
+       executableHaskellDepends = [
+         base containers Hclip optparse-applicative process text
+         transformers unix
+       ];
+       testHaskellDepends = [
+         base containers Hclip optparse-applicative process text
+         transformers unix
+       ];
+       description = "Record your shell session and print in the markdown format";
+       license = stdenv.lib.licenses.bsd3;
+     }) {};
+
   "sha-streams" = callPackage
     ({ mkDerivation, base, binary, bytestring, io-streams, SHA }:
      mkDerivation {
@@ -193997,17 +194044,17 @@ self: {
        hydraPlatforms = stdenv.lib.platforms.none;
      }) {};
 
-  "slave-thread_1_0_2_6" = callPackage
+  "slave-thread_1_0_2_7" = callPackage
     ({ mkDerivation, base, deferred-folds, foldl, QuickCheck
      , quickcheck-instances, rerebase, SafeSemaphore, stm-containers
-     , tasty, tasty-hunit, tasty-quickcheck, transformers
+     , tasty, tasty-hunit, tasty-quickcheck
      }:
      mkDerivation {
        pname = "slave-thread";
-       version = "1.0.2.6";
-       sha256 = "014j8rsbkrkabpvq5sxp6i2d3gpzn4ddnfwl1p5cg3xlmr950ksn";
+       version = "1.0.2.7";
+       sha256 = "1rh7314l12d18pywsd7fl4d96dn0s777asf2i7p99nhyzacjnbb6";
        libraryHaskellDepends = [
-         base deferred-folds foldl stm-containers transformers
+         base deferred-folds foldl stm-containers
        ];
        testHaskellDepends = [
          QuickCheck quickcheck-instances rerebase SafeSemaphore tasty
@@ -202800,8 +202847,8 @@ self: {
      }:
      mkDerivation {
        pname = "structured-cli";
-       version = "2.3.0.0";
-       sha256 = "1qpyh9cjdxd6v5xdzp44qlpn0mskqc9qzs78rbyr1q1ylmlja6a7";
+       version = "2.4.0.1";
+       sha256 = "1978icz9iiq213l240r3m5dmizdl3493xrqlzdz16b0vpfkxmq0k";
        isLibrary = true;
        isExecutable = true;
        libraryHaskellDepends = [
@@ -213470,6 +213517,8 @@ self: {
        pname = "toml-parser";
        version = "0.1.0.0";
        sha256 = "0p1nl3009qlcqn4jjggbm1v719a6bswklkyjb3plm0cz3bsyr0fs";
+       revision = "1";
+       editedCabalFile = "0w5vpr6gh0671znv3k90gy9fzjvxzn3g7bir2c6z27ks6y39w0qf";
        libraryHaskellDepends = [ array base text time ];
        libraryToolDepends = [ alex happy ];
        description = "Parser for the TOML configuration language";
@@ -216526,8 +216575,8 @@ self: {
     ({ mkDerivation, base, containers, template-haskell }:
      mkDerivation {
        pname = "tyfam-witnesses";
-       version = "0.1.1.1";
-       sha256 = "1rnmnj2dlzbzj12fddv73mg0p0qgvn5blknb7d9ayns6pxc57aap";
+       version = "0.1.1.2";
+       sha256 = "0gsx2syy58gq7n2yi4whslbnwg4dh34x8jy56h11k8z6n01inppc";
        libraryHaskellDepends = [ base containers template-haskell ];
        description = "Provide proof witnesses for closed type family evaluation";
        license = stdenv.lib.licenses.mit;
@@ -216993,6 +217042,28 @@ self: {
        license = stdenv.lib.licenses.bsd3;
      }) {};
 
+  "type-of-html_1_4_1_0" = callPackage
+    ({ mkDerivation, base, blaze-html, bytestring, criterion, deepseq
+     , double-conversion, ghc, ghc-paths, ghc-prim, hspec, QuickCheck
+     , random, temporary, text, weigh
+     }:
+     mkDerivation {
+       pname = "type-of-html";
+       version = "1.4.1.0";
+       sha256 = "05c9rsbfivw7dsjmci7rnv08i4xmyg59kqghqi0f3dr5hrvas8dv";
+       libraryHaskellDepends = [
+         base bytestring double-conversion ghc-prim text
+       ];
+       testHaskellDepends = [ base hspec QuickCheck ];
+       benchmarkHaskellDepends = [
+         base blaze-html bytestring criterion deepseq ghc ghc-paths random
+         temporary text weigh
+       ];
+       description = "High performance type driven html generation";
+       license = stdenv.lib.licenses.bsd3;
+       hydraPlatforms = stdenv.lib.platforms.none;
+     }) {};
+
   "type-of-html-static" = callPackage
     ({ mkDerivation, base, template-haskell, type-of-html }:
      mkDerivation {
@@ -223722,29 +223793,31 @@ self: {
     ({ mkDerivation, attoparsec, base, bifunctors, bytestring, Cabal
      , cabal-doctest, containers, contravariant, digit, directory
      , distributive, doctest, errors, filepath, generics-sop, hedgehog
-     , hoist-error, hw-balancedparens, hw-bits, hw-json, hw-prim
-     , hw-rankselect, lens, mmorph, mtl, nats, parsers, scientific
-     , semigroups, tagged, tasty, tasty-expected-failure, tasty-hedgehog
-     , tasty-hunit, template-haskell, text, transformers, vector
-     , witherable, wl-pprint-annotated, zippers
+     , hedgehog-fn, hoist-error, hw-balancedparens, hw-bits, hw-json
+     , hw-prim, hw-rankselect, lens, mmorph, mtl, nats, parsers
+     , scientific, semigroupoids, semigroups, tagged, tasty
+     , tasty-expected-failure, tasty-hedgehog, tasty-hunit
+     , template-haskell, text, transformers, vector, witherable
+     , wl-pprint-annotated, zippers
      }:
      mkDerivation {
        pname = "waargonaut";
-       version = "0.2.0.2";
-       sha256 = "0sl4rhkrykd9hn1dpzzsf8hcg5jhx4f7wwysmam8apkkj0hafp17";
+       version = "0.2.1.0";
+       sha256 = "07b5cwcn0n68fzgafz2zcrcqm84dx12axq3s68n81az302v9r2wr";
        setupHaskellDepends = [ base Cabal cabal-doctest ];
        libraryHaskellDepends = [
          base bifunctors bytestring containers contravariant digit
          distributive errors generics-sop hoist-error hw-balancedparens
          hw-bits hw-json hw-prim hw-rankselect lens mmorph mtl nats parsers
-         scientific semigroups tagged text transformers vector witherable
-         wl-pprint-annotated zippers
+         scientific semigroupoids semigroups tagged text transformers vector
+         witherable wl-pprint-annotated zippers
        ];
        testHaskellDepends = [
-         attoparsec base bytestring digit directory distributive doctest
-         filepath generics-sop hedgehog lens scientific semigroups tagged
-         tasty tasty-expected-failure tasty-hedgehog tasty-hunit
-         template-haskell text vector zippers
+         attoparsec base bytestring containers digit directory distributive
+         doctest filepath generics-sop hedgehog hedgehog-fn lens mtl
+         scientific semigroupoids semigroups tagged tasty
+         tasty-expected-failure tasty-hedgehog tasty-hunit template-haskell
+         text vector zippers
        ];
        description = "JSON wrangling";
        license = stdenv.lib.licenses.bsd3;
@@ -233628,8 +233701,8 @@ self: {
      }:
      mkDerivation {
        pname = "yesod-markdown";
-       version = "0.12.3";
-       sha256 = "10vnip7yifq3li4jwql5pzrdaqf1z2bb4h99rf1iqzvd3b8mqq30";
+       version = "0.12.4";
+       sha256 = "14fpjdx5bn9qflarj4za5ncqd7q3dlpa71y76x7z9inz1k1jx684";
        libraryHaskellDepends = [
          base blaze-html blaze-markup bytestring directory pandoc persistent
          shakespeare text xss-sanitize yesod-core yesod-form

From 5966c5698f8c8928ca86d840249d89a04bdbed1a Mon Sep 17 00:00:00 2001
From: Eric Wolf <ericwolf42@gmail.com>
Date: Sat, 10 Nov 2018 17:07:54 +0100
Subject: [PATCH 1109/1129] haskell-opencv: fix build and #47595

The applied patch can be removed, when
https://github.com/LumiGuide/haskell-opencv/commit/cd613e200aa20887ded83256cf67d6903c207a60
hits hackage and later nixpkgs.

Closes https://github.com/NixOS/nixpkgs/pull/50192.
Closes https://github.com/NixOS/nixpkgs/issues/47595.
---
 .../haskell-modules/configuration-common.nix          |  4 ++++
 .../haskell-modules/patches/opencv-fix-116.patch      | 11 +++++++++++
 2 files changed, 15 insertions(+)
 create mode 100644 pkgs/development/haskell-modules/patches/opencv-fix-116.patch

diff --git a/pkgs/development/haskell-modules/configuration-common.nix b/pkgs/development/haskell-modules/configuration-common.nix
index 5928f6624e9b..690551a42558 100644
--- a/pkgs/development/haskell-modules/configuration-common.nix
+++ b/pkgs/development/haskell-modules/configuration-common.nix
@@ -251,6 +251,10 @@ self: super: {
   # Fails for non-obvious reasons while attempting to use doctest.
   search = dontCheck super.search;
 
+  # see https://github.com/LumiGuide/haskell-opencv/commit/cd613e200aa20887ded83256cf67d6903c207a60
+  opencv = dontCheck (appendPatch super.opencv ./patches/opencv-fix-116.patch);
+  opencv-extra = dontCheck (appendPatch super.opencv-extra ./patches/opencv-fix-116.patch);
+
   # https://github.com/ekmett/structures/issues/3
   structures = dontCheck super.structures;
 
diff --git a/pkgs/development/haskell-modules/patches/opencv-fix-116.patch b/pkgs/development/haskell-modules/patches/opencv-fix-116.patch
new file mode 100644
index 000000000000..bf89d8daf9fc
--- /dev/null
+++ b/pkgs/development/haskell-modules/patches/opencv-fix-116.patch
@@ -0,0 +1,11 @@
+diff -ur opencv-0.0.2.1.bak/Setup.hs opencv-0.0.2.1/Setup.hs
+--- opencv-0.0.2.1.bak/Setup.hs	2018-11-10 17:18:41.355731189 +0100
++++ opencv-0.0.2.1/Setup.hs	2018-11-10 17:18:56.901681162 +0100
+@@ -3,6 +3,6 @@
+ 
+ main = do
+     args <- getArgs
+-    let args' | "configure" `elem` args = args ++ ["--with-gcc","c++", "--with-ld","c++"]
++    let args' | "configure" `elem` args = args ++ ["--with-gcc","c++"]
+               | otherwise               = args
+     defaultMainArgs args'

From bf05da0967408ab71f05e51bb901ce1b1e72fa5b Mon Sep 17 00:00:00 2001
From: "Markus J. Ankenbrand" <iimog@iimog.org>
Date: Tue, 13 Nov 2018 09:43:44 -0500
Subject: [PATCH 1110/1129] hmmer: 3.1b2 -> 3.2.1 (#50284)

This version was released in June 2018 and has many bug fixes
and improvements compared to the previous version from 2015.
See: https://cryptogenomicon.org/2018/06/07/hmmer-3-2-release/
---
 .../science/biology/hmmer/default.nix         | 19 ++++++++-----------
 1 file changed, 8 insertions(+), 11 deletions(-)

diff --git a/pkgs/applications/science/biology/hmmer/default.nix b/pkgs/applications/science/biology/hmmer/default.nix
index 8552aa34c433..e43d48db55f3 100644
--- a/pkgs/applications/science/biology/hmmer/default.nix
+++ b/pkgs/applications/science/biology/hmmer/default.nix
@@ -1,28 +1,25 @@
 { stdenv, fetchurl }:
 
 stdenv.mkDerivation rec {
-  version = "3.1b2";
+  version = "3.2.1";
   name = "hmmer-${version}";
 
   src = fetchurl {
-    url = "http://eddylab.org/software/hmmer3/${version}/${name}.tar.gz";
-    sha256 = "0djmgc0pfli0jilfx8hql1axhwhqxqb8rxg2r5rg07aw73sfs5nx";
+    url = "http://eddylab.org/software/hmmer/${name}.tar.gz";
+    sha256 = "171bivy6xhgjsz5nv53n81pc3frnwz29ylblawk2bv46szwjjqd5";
   };
 
   meta = with stdenv.lib; {
     description = "Biosequence analysis using profile hidden Markov models";
     longDescription = ''
-HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).
-
-HMMER is often used together with a profile database, such as Pfam or many of the databases that participate in Interpro. But HMMER can also work with query sequences, not just profiles, just like BLAST. For example, you can search a protein query sequence against a database with phmmer, or do an iterative search with jackhmmer.
-
-HMMER is designed to detect remote homologs as sensitively as possible, relying on the strength of its underlying probability models. In the past, this strength came at significant computational expense, but as of the new HMMER3 project, HMMER is now essentially as fast as BLAST.
-
-HMMER can be downloaded and installed as a command line tool on your own hardware, and now it is also more widely accessible to the scientific community via new search servers at the European Bioinformatics Institute.
+      HMMER is used for searching sequence databases for sequence homologs, and for making sequence alignments. It implements methods using probabilistic models called profile hidden Markov models (profile HMMs).
+      HMMER is often used together with a profile database, such as Pfam or many of the databases that participate in Interpro. But HMMER can also work with query sequences, not just profiles, just like BLAST. For example, you can search a protein query sequence against a database with phmmer, or do an iterative search with jackhmmer.
+      HMMER is designed to detect remote homologs as sensitively as possible, relying on the strength of its underlying probability models. In the past, this strength came at significant computational expense, but as of the new HMMER3 project, HMMER is now essentially as fast as BLAST.
+      HMMER can be downloaded and installed as a command line tool on your own hardware, and now it is also more widely accessible to the scientific community via new search servers at the European Bioinformatics Institute.
     '';
     homepage = http://hmmer.org/;
     license = licenses.gpl3;
     maintainers = [ maintainers.iimog ];
-    platforms = platforms.linux;
+    platforms = [ "x86_64-linux" "i686-linux" ];
   };
 }

From d837beb57ca5a54299fb83d1167439a09a3ca424 Mon Sep 17 00:00:00 2001
From: WilliButz <WilliButz@users.noreply.github.com>
Date: Tue, 13 Nov 2018 16:49:53 +0100
Subject: [PATCH 1111/1129] grafana: 5.3.2 -> 5.3.4 (#50311)

---
 pkgs/servers/monitoring/grafana/default.nix | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/servers/monitoring/grafana/default.nix b/pkgs/servers/monitoring/grafana/default.nix
index 70112732d273..eaa21fcd0a5d 100644
--- a/pkgs/servers/monitoring/grafana/default.nix
+++ b/pkgs/servers/monitoring/grafana/default.nix
@@ -1,7 +1,7 @@
 { lib, buildGoPackage, fetchurl, fetchFromGitHub, phantomjs2 }:
 
 buildGoPackage rec {
-  version = "5.3.2";
+  version = "5.3.4";
   name = "grafana-${version}";
   goPackagePath = "github.com/grafana/grafana";
 
@@ -9,12 +9,12 @@ buildGoPackage rec {
     rev = "v${version}";
     owner = "grafana";
     repo = "grafana";
-    sha256 = "1p2vapyaf11d7zri73vnq1rsgwb018pqbjzdkdgppcm5xfrrjh8y";
+    sha256 = "1fhzdkd1hr7l9cy7c9r03pgaxklfgj09q21ljrahqr006gcn1wgn";
   };
 
   srcStatic = fetchurl {
     url = "https://s3-us-west-2.amazonaws.com/grafana-releases/release/grafana-${version}.linux-amd64.tar.gz";
-    sha256 = "067rj2lrdwxda1clcg89m1cnl9sfrl2l9ia5fx2bcxq3yzhchazh";
+    sha256 = "06andnnnsh68lmra9gc85rsmyx88cwlq2kwzks1d5axpy2mq5arv";
   };
 
   postPatch = ''

From ab4b7452cbde73cffea1c4fbeca35a785085bdd5 Mon Sep 17 00:00:00 2001
From: Francesco Gazzetta <fgaz@users.noreply.github.com>
Date: Tue, 13 Nov 2018 16:52:33 +0100
Subject: [PATCH 1112/1129] isso: 0.10.6 -> 0.11.1 (#50310)

---
 pkgs/servers/isso/default.nix | 43 ++++++++++++-----------------------
 1 file changed, 14 insertions(+), 29 deletions(-)

diff --git a/pkgs/servers/isso/default.nix b/pkgs/servers/isso/default.nix
index 9e8a9dc9ec60..b41115339873 100644
--- a/pkgs/servers/isso/default.nix
+++ b/pkgs/servers/isso/default.nix
@@ -1,43 +1,27 @@
 { stdenv, python2, fetchFromGitHub }:
 
-let python = python2.override {
-  packageOverrides = self: super: {
-    misaka = super.misaka.overridePythonAttrs (old: rec {
-      version = "1.0.2";
-      src = old.src.override {
-        inherit version;
-        sha256 = "05rmjxlfhghj90m1kc55lx3z8igabw5y8wmly66p3hphdy4f95v1";
-      };
-      propagatedBuildInputs = [ ];
-    });
-    html5lib = super.html5lib.overridePythonAttrs (old: rec {
-      version = "0.9999999";
-      src = old.src.override {
-        inherit version;
-        sha256 = "2612a191a8d5842bfa057e41ba50bbb9dcb722419d2408c78cff4758d0754868";
-      };
-      checkInputs = with self; [ nose flake8 ];
-      propagatedBuildInputs = with self; [ six ];
-      checkPhase = ''
-        nosetests
-      '';
-    });
-  };
-};
-
-in with python.pkgs; buildPythonApplication rec {
+with python2.pkgs; buildPythonApplication rec {
   pname = "isso";
-  version = "0.10.6";
+  version = "0.11.1";
 
   # no tests on PyPI
   src = fetchFromGitHub {
     owner = "posativ";
     repo = pname;
     rev = version;
-    sha256 = "19x9xbwd15fikhchyl4i1wrqx589hdmh279xhnxdszrq898igywb";
+    sha256 = "0545vh0sb5i4cz9c0qgch77smpwgav3rhl1dxk9ij6rx4igjk03j";
   };
 
-  propagatedBuildInputs = [ misaka werkzeug ipaddr configparser html5lib ];
+  propagatedBuildInputs = [
+    bleach
+    cffi
+    configparser
+    html5lib
+    ipaddr
+    jinja2
+    misaka
+    werkzeug
+  ];
 
   checkInputs = [ nose ];
 
@@ -52,3 +36,4 @@ in with python.pkgs; buildPythonApplication rec {
     maintainers = with maintainers; [ fgaz ];
   };
 }
+

From 5d78f59d37fd8701243d4b05ea28ef939dd122f5 Mon Sep 17 00:00:00 2001
From: aanderse <aaron@fosslib.net>
Date: Tue, 13 Nov 2018 12:25:48 -0500
Subject: [PATCH 1113/1129] libcec: 4.0.2 -> 4.0.3 (#50289)

---
 pkgs/development/libraries/libcec/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/development/libraries/libcec/default.nix b/pkgs/development/libraries/libcec/default.nix
index e60f5e316bd0..6dec972e249b 100644
--- a/pkgs/development/libraries/libcec/default.nix
+++ b/pkgs/development/libraries/libcec/default.nix
@@ -1,13 +1,13 @@
 { stdenv, fetchurl, cmake, pkgconfig, udev, libcec_platform }:
 
-let version = "4.0.2"; in
+let version = "4.0.3"; in
 
 stdenv.mkDerivation {
   name = "libcec-${version}";
 
   src = fetchurl {
     url = "https://github.com/Pulse-Eight/libcec/archive/libcec-${version}.tar.gz";
-    sha256 = "09xsw9hfymzl9fi9r2r8n5cxk80fc00x9drsy1r59pgbycqxvf5q";
+    sha256 = "1713qs4nrynkcr3mgs1i7xj10lcyaxqipwiz9p0lfn4xrzjdd47g";
   };
 
   nativeBuildInputs = [ pkgconfig ];

From 2a9ea69cd5d8cfca9bdafcd46567184761b3ecd5 Mon Sep 17 00:00:00 2001
From: Kai Wohlfahrt <kai@prodo.ai>
Date: Mon, 12 Nov 2018 11:58:40 +0000
Subject: [PATCH 1114/1129] scikitlearn: 0.19.2 -> 0.20.0

Also re-enable tests
---
 .../python-modules/scikitlearn/default.nix    | 19 ++++++++-----------
 1 file changed, 8 insertions(+), 11 deletions(-)

diff --git a/pkgs/development/python-modules/scikitlearn/default.nix b/pkgs/development/python-modules/scikitlearn/default.nix
index 4e22110bf3d4..320f559bf8b0 100644
--- a/pkgs/development/python-modules/scikitlearn/default.nix
+++ b/pkgs/development/python-modules/scikitlearn/default.nix
@@ -1,34 +1,31 @@
 { stdenv, buildPythonPackage, fetchPypi, python
-, nose, pillow
 , gfortran, glibcLocales
-, numpy, scipy
+, numpy, scipy, pytest, pillow
 }:
 
 buildPythonPackage rec {
   pname = "scikit-learn";
-  version = "0.19.2";
+  version = "0.20.0";
   # UnboundLocalError: local variable 'message' referenced before assignment
-  doCheck = false;
   disabled = stdenv.isi686;  # https://github.com/scikit-learn/scikit-learn/issues/5534
 
   src = fetchPypi {
     inherit pname version;
-    sha256 = "b276739a5f863ccacb61999a3067d0895ee291c95502929b2ae56ea1f882e888";
+    sha256 = "064cbxsis6m7l6pr09ijjwqdv0c0yrfnazabwq8p09gcz1qxklcp";
   };
 
-  buildInputs = [ nose pillow gfortran glibcLocales ];
+  buildInputs = [ pillow gfortran glibcLocales ];
   propagatedBuildInputs = [ numpy scipy numpy.blas ];
+  checkInputs = [ pytest ];
 
   LC_ALL="en_US.UTF-8";
 
-  # Disable doctests on OSX: https://github.com/scikit-learn/scikit-learn/issues/10213
-  # Disable doctests everywhere: https://github.com/NixOS/nixpkgs/issues/35436
+  # Skip test_feature_importance_regression - does web fetch
   checkPhase = ''
-    HOME=$TMPDIR OMP_NUM_THREADS=1 nosetests --doctest-options=+SKIP $out/${python.sitePackages}/sklearn/
+    cd $TMPDIR
+    HOME=$TMPDIR OMP_NUM_THREADS=1 pytest -k "not test_feature_importance_regression" --pyargs sklearn
   '';
 
-
-
   meta = with stdenv.lib; {
     description = "A set of python modules for machine learning and data mining";
     homepage = http://scikit-learn.org;

From da65cfca0242beed8182b5c8592f890f95a7e5ca Mon Sep 17 00:00:00 2001
From: Kai Wohlfahrt <kai@prodo.ai>
Date: Tue, 13 Nov 2018 12:59:20 +0000
Subject: [PATCH 1115/1129] scikitlearn: disable tests on aarch64

---
 pkgs/development/python-modules/scikitlearn/default.nix | 1 +
 1 file changed, 1 insertion(+)

diff --git a/pkgs/development/python-modules/scikitlearn/default.nix b/pkgs/development/python-modules/scikitlearn/default.nix
index 320f559bf8b0..c6cd2efcc2fe 100644
--- a/pkgs/development/python-modules/scikitlearn/default.nix
+++ b/pkgs/development/python-modules/scikitlearn/default.nix
@@ -20,6 +20,7 @@ buildPythonPackage rec {
 
   LC_ALL="en_US.UTF-8";
 
+  doCheck = !stdenv.isAarch64;
   # Skip test_feature_importance_regression - does web fetch
   checkPhase = ''
     cd $TMPDIR

From e80cdb2bac7dc9dec58bd7fbe76a7ae9dfda782e Mon Sep 17 00:00:00 2001
From: Florian Jacob <projects+git@florianjacob.de>
Date: Tue, 13 Nov 2018 19:05:30 +0100
Subject: [PATCH 1116/1129] nixos/systemd-resolved: link resolv.conf to dynamic
 stub resolver version as recommended by upstream (since systemd 236):
 https://www.freedesktop.org/software/systemd/man/systemd-resolved.html#/etc/resolv.conf

---
 nixos/modules/config/networking.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/nixos/modules/config/networking.nix b/nixos/modules/config/networking.nix
index 627cce67e97d..e6b49d4c2194 100644
--- a/nixos/modules/config/networking.nix
+++ b/nixos/modules/config/networking.nix
@@ -260,9 +260,9 @@ in
             '';
 
       } // optionalAttrs config.services.resolved.enable {
-        # symlink the static version of resolv.conf as recommended by upstream:
+        # symlink the dynamic stub resolver of resolv.conf as recommended by upstream:
         # https://www.freedesktop.org/software/systemd/man/systemd-resolved.html#/etc/resolv.conf
-        "resolv.conf".source = "${pkgs.systemd}/lib/systemd/resolv.conf";
+        "resolv.conf".source = "/run/systemd/resolve/stub-resolv.conf";
       } // optionalAttrs (config.services.resolved.enable && dnsmasqResolve) {
         "dnsmasq-resolv.conf".source = "/run/systemd/resolve/resolv.conf";
       } // optionalAttrs (pkgs.stdenv.hostPlatform.libc == "glibc") {

From 146eb2a5743c3df53429b7a6a312d514b9d0d196 Mon Sep 17 00:00:00 2001
From: Sam Stites <stites@users.noreply.github.com>
Date: Tue, 13 Nov 2018 11:34:25 -0800
Subject: [PATCH 1117/1129] rubber: 1.4 -> 1.5.1 (#50320)

---
 pkgs/tools/typesetting/rubber/default.nix | 10 +++++-----
 1 file changed, 5 insertions(+), 5 deletions(-)

diff --git a/pkgs/tools/typesetting/rubber/default.nix b/pkgs/tools/typesetting/rubber/default.nix
index bbcda05dc801..92c1cc526955 100644
--- a/pkgs/tools/typesetting/rubber/default.nix
+++ b/pkgs/tools/typesetting/rubber/default.nix
@@ -1,12 +1,12 @@
-{ fetchurl, stdenv, python2Packages, texinfo }:
+{ fetchurl, stdenv, python3Packages, texinfo }:
 
-python2Packages.buildPythonApplication rec {
+python3Packages.buildPythonApplication rec {
   name = "rubber-${version}";
-  version = "1.4";
+  version = "1.5.1";
 
   src = fetchurl {
     url = "https://launchpad.net/rubber/trunk/${version}/+download/${name}.tar.gz";
-    sha256 = "1d7hq19vpb3l31grldbxg8lx1qdd18f5f3gqw96q0lhf58agcjl2";
+    sha256 = "178dmrp0mza5gqjiqgk6dqs0c10s0c517pk6k9pjbam86vf47a1p";
   };
 
   propagatedBuildInputs = [ texinfo ];
@@ -20,7 +20,7 @@ python2Packages.buildPythonApplication rec {
   # the check scripts forces python2. If we need to use python3 at some point, we should use
   # the correct python
   checkPhase = ''
-    sed -i 's|python=python2|python=${python2Packages.python.interpreter}|' tests/run.sh
+    sed -i 's|python=python3|python=${python3Packages.python.interpreter}|' tests/run.sh
     cd tests && ${stdenv.shell} run.sh
   '';
 

From 72435f7685c0da50c6466638383a22c5619f865c Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Tue, 13 Nov 2018 14:34:29 -0500
Subject: [PATCH 1118/1129] linux: 4.9.136 -> 4.9.137

---
 pkgs/os-specific/linux/kernel/linux-4.9.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/kernel/linux-4.9.nix b/pkgs/os-specific/linux/kernel/linux-4.9.nix
index 666e69f2509c..1c5b104496a5 100644
--- a/pkgs/os-specific/linux/kernel/linux-4.9.nix
+++ b/pkgs/os-specific/linux/kernel/linux-4.9.nix
@@ -1,11 +1,11 @@
 { stdenv, buildPackages, fetchurl, perl, buildLinux, ... } @ args:
 
 buildLinux (args // rec {
-  version = "4.9.136";
+  version = "4.9.137";
   extraMeta.branch = "4.9";
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz";
-    sha256 = "1j1f4v3m0gggarz0r33pk907gf8dy633s9x5k3ww3khkvzi335fk";
+    sha256 = "1295x8a8k8bdanrpsalnaaq00mk3fl91sr14061lrgwlj0m53ckd";
   };
 } // (args.argsOverride or {}))

From 88e7ac48c74d5cb3343b41b92840e67c9ad2ffd6 Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Tue, 13 Nov 2018 14:34:40 -0500
Subject: [PATCH 1119/1129] linux: 4.14.80 -> 4.14.81

---
 pkgs/os-specific/linux/kernel/linux-4.14.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/kernel/linux-4.14.nix b/pkgs/os-specific/linux/kernel/linux-4.14.nix
index 61afe092f722..ede42ea66284 100644
--- a/pkgs/os-specific/linux/kernel/linux-4.14.nix
+++ b/pkgs/os-specific/linux/kernel/linux-4.14.nix
@@ -3,7 +3,7 @@
 with stdenv.lib;
 
 buildLinux (args // rec {
-  version = "4.14.80";
+  version = "4.14.81";
 
   # modDirVersion needs to be x.y.z, will automatically add .0 if needed
   modDirVersion = if (modDirVersionArg == null) then concatStrings (intersperse "." (take 3 (splitString "." "${version}.0"))) else modDirVersionArg;
@@ -13,6 +13,6 @@ buildLinux (args // rec {
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz";
-    sha256 = "1lnp7qnlbj8mrc6iwnffpq3dbms3l40qxwdbqmd4g9my3k0ppp4x";
+    sha256 = "1pjvwyhag2i8i5kns8836ifpk93ssvp35m4rfxhz0kl4ag8dydjb";
   };
 } // (args.argsOverride or {}))

From a3cbaf25078f1a09942caf6101e54711681ca4e6 Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Tue, 13 Nov 2018 14:34:51 -0500
Subject: [PATCH 1120/1129] linux: 4.18.18 -> 4.18.19

---
 pkgs/os-specific/linux/kernel/linux-4.18.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/kernel/linux-4.18.nix b/pkgs/os-specific/linux/kernel/linux-4.18.nix
index 7859a32aeaf4..dd7a7174b16d 100644
--- a/pkgs/os-specific/linux/kernel/linux-4.18.nix
+++ b/pkgs/os-specific/linux/kernel/linux-4.18.nix
@@ -3,7 +3,7 @@
 with stdenv.lib;
 
 buildLinux (args // rec {
-  version = "4.18.18";
+  version = "4.18.19";
 
   # modDirVersion needs to be x.y.z, will automatically add .0 if needed
   modDirVersion = if (modDirVersionArg == null) then concatStrings (intersperse "." (take 3 (splitString "." "${version}.0"))) else modDirVersionArg;
@@ -13,6 +13,6 @@ buildLinux (args // rec {
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz";
-    sha256 = "0g83i1ai0z0gpjw1rm8a8wdipjjxhfdvp798nrl14l5d2pw63crl";
+    sha256 = "1g9iasj17i6z5494azsbr4pji7qj27f1fasrx36fbxy4rp1w8rkw";
   };
 } // (args.argsOverride or {}))

From 248dfd28426dd227cdbc7e5e17e24b6eec46fd8a Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Tue, 13 Nov 2018 14:35:06 -0500
Subject: [PATCH 1121/1129] linux: 4.19.1 -> 4.19.2

---
 pkgs/os-specific/linux/kernel/linux-4.19.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/os-specific/linux/kernel/linux-4.19.nix b/pkgs/os-specific/linux/kernel/linux-4.19.nix
index d597818dab68..82e0a1f4c084 100644
--- a/pkgs/os-specific/linux/kernel/linux-4.19.nix
+++ b/pkgs/os-specific/linux/kernel/linux-4.19.nix
@@ -3,7 +3,7 @@
 with stdenv.lib;
 
 buildLinux (args // rec {
-  version = "4.19.1";
+  version = "4.19.2";
 
   # modDirVersion needs to be x.y.z, will automatically add .0 if needed
   modDirVersion = if (modDirVersionArg == null) then concatStrings (intersperse "." (take 3 (splitString "." "${version}.0"))) else modDirVersionArg;
@@ -13,6 +13,6 @@ buildLinux (args // rec {
 
   src = fetchurl {
     url = "mirror://kernel/linux/kernel/v4.x/linux-${version}.tar.xz";
-    sha256 = "0ac8w310p83z11ksmyad7by7cmacwg4vq68pzxchc88bbk33gmk4";
+    sha256 = "0wyzy8i2lfhz2rf9ilygl2jgz6iyspv2amx2fzm85mwv060py361";
   };
 } // (args.argsOverride or {}))

From ccb2dead1bceed4cef4bfef739b33ab2748e4f64 Mon Sep 17 00:00:00 2001
From: Tim Steinbach <tim@nequissimus.com>
Date: Tue, 13 Nov 2018 14:48:15 -0500
Subject: [PATCH 1122/1129] Fix tarball builds

Do not refer to <nixpkgs> as it will produce the following message:

"evaluation aborted with the following error message: 'Illegal use of <nixpkgs> in Nixpkgs.'"
---
 pkgs/development/interpreters/clojurescript/lumo/deps.nix | 5 ++---
 1 file changed, 2 insertions(+), 3 deletions(-)

diff --git a/pkgs/development/interpreters/clojurescript/lumo/deps.nix b/pkgs/development/interpreters/clojurescript/lumo/deps.nix
index 8ce50b6e7b4b..3e53c7f98dd7 100644
--- a/pkgs/development/interpreters/clojurescript/lumo/deps.nix
+++ b/pkgs/development/interpreters/clojurescript/lumo/deps.nix
@@ -1,6 +1,6 @@
 # generated by clj2nix-1.0.3
-{ pkgs ? import <nixpkgs> {} }:
-  
+{ pkgs }:
+
   let repos = [
         "https://repo.clojars.org/"
         "https://repo1.maven.org/"
@@ -391,4 +391,3 @@
 
   ];
   }
-  
\ No newline at end of file

From 4839403dd61fd5054f623846bc82f568a33eec66 Mon Sep 17 00:00:00 2001
From: Tobias Happ <tobias.happ@gmx.de>
Date: Fri, 9 Nov 2018 16:47:16 +0100
Subject: [PATCH 1123/1129] nixos/{lightdm,sddm,xpra}: remove enabling of
 logToFile

---
 nixos/doc/manual/release-notes/rl-1903.xml    |  8 ++++
 .../services/x11/display-managers/lightdm.nix | 14 +++---
 .../services/x11/display-managers/sddm.nix    |  2 -
 .../services/x11/display-managers/xpra.nix    | 44 +++++++++----------
 4 files changed, 33 insertions(+), 35 deletions(-)

diff --git a/nixos/doc/manual/release-notes/rl-1903.xml b/nixos/doc/manual/release-notes/rl-1903.xml
index dafd62e8779b..a1f715a3adf1 100644
--- a/nixos/doc/manual/release-notes/rl-1903.xml
+++ b/nixos/doc/manual/release-notes/rl-1903.xml
@@ -212,6 +212,14 @@
      <literal>hardware.ckb-next.*</literal>.
     </para>
    </listitem>
+   <listitem>
+    <para>
+     The option <literal>services.xserver.displayManager.job.logToFile</literal> which was
+     previously set to <literal>true</literal> when using the display managers
+     <literal>lightdm</literal>, <literal>sddm</literal> or <literal>xpra</literal> has been
+     reset to the default value (<literal>false</literal>).
+    </para>
+   </listitem>
   </itemizedlist>
  </section>
 
diff --git a/nixos/modules/services/x11/display-managers/lightdm.nix b/nixos/modules/services/x11/display-managers/lightdm.nix
index a685dbfff2a0..e1688c451045 100644
--- a/nixos/modules/services/x11/display-managers/lightdm.nix
+++ b/nixos/modules/services/x11/display-managers/lightdm.nix
@@ -208,15 +208,11 @@ in
       }
     ];
 
-    services.xserver.displayManager.job = {
-      logToFile = true;
-
-      # lightdm relaunches itself via just `lightdm`, so needs to be on the PATH
-      execCmd = ''
-        export PATH=${lightdm}/sbin:$PATH
-        exec ${lightdm}/sbin/lightdm
-      '';
-    };
+    # lightdm relaunches itself via just `lightdm`, so needs to be on the PATH
+    services.xserver.displayManager.job.execCmd = ''
+      export PATH=${lightdm}/sbin:$PATH
+      exec ${lightdm}/sbin/lightdm
+    '';
 
     environment.etc."lightdm/lightdm.conf".source = lightdmConf;
     environment.etc."lightdm/users.conf".source = usersConf;
diff --git a/nixos/modules/services/x11/display-managers/sddm.nix b/nixos/modules/services/x11/display-managers/sddm.nix
index 522a0dc92d6f..b7511dfd5a8b 100644
--- a/nixos/modules/services/x11/display-managers/sddm.nix
+++ b/nixos/modules/services/x11/display-managers/sddm.nix
@@ -209,8 +209,6 @@ in
     ];
 
     services.xserver.displayManager.job = {
-      logToFile = true;
-
       environment = {
         # Load themes from system environment
         QT_PLUGIN_PATH = "/run/current-system/sw/" + pkgs.qt5.qtbase.qtPluginPrefix;
diff --git a/nixos/modules/services/x11/display-managers/xpra.nix b/nixos/modules/services/x11/display-managers/xpra.nix
index b46ede550c16..a4b57cfdab64 100644
--- a/nixos/modules/services/x11/display-managers/xpra.nix
+++ b/nixos/modules/services/x11/display-managers/xpra.nix
@@ -219,30 +219,26 @@ in
       VideoRam 192000
     '';
 
-    services.xserver.displayManager.job = {
-      logToFile = true;
-
-      execCmd = ''
-        ${optionalString (cfg.pulseaudio)
-          "export PULSE_COOKIE=/var/run/pulse/.config/pulse/cookie"}
-        exec ${pkgs.xpra}/bin/xpra start \
-          --daemon=off \
-          --log-dir=/var/log \
-          --log-file=xpra.log \
-          --opengl=on \
-          --clipboard=on \
-          --notifications=on \
-          --speaker=yes \
-          --mdns=no \
-          --pulseaudio=no \
-          ${optionalString (cfg.pulseaudio) "--sound-source=pulse"} \
-          --socket-dirs=/var/run/xpra \
-          --xvfb="xpra_Xdummy ${concatStringsSep " " dmcfg.xserverArgs}" \
-          ${optionalString (cfg.bindTcp != null) "--bind-tcp=${cfg.bindTcp}"} \
-          --auth=${cfg.auth} \
-          ${concatStringsSep " " cfg.extraOptions}
-      '';
-    };
+    services.xserver.displayManager.job.execCmd = ''
+      ${optionalString (cfg.pulseaudio)
+        "export PULSE_COOKIE=/var/run/pulse/.config/pulse/cookie"}
+      exec ${pkgs.xpra}/bin/xpra start \
+        --daemon=off \
+        --log-dir=/var/log \
+        --log-file=xpra.log \
+        --opengl=on \
+        --clipboard=on \
+        --notifications=on \
+        --speaker=yes \
+        --mdns=no \
+        --pulseaudio=no \
+        ${optionalString (cfg.pulseaudio) "--sound-source=pulse"} \
+        --socket-dirs=/var/run/xpra \
+        --xvfb="xpra_Xdummy ${concatStringsSep " " dmcfg.xserverArgs}" \
+        ${optionalString (cfg.bindTcp != null) "--bind-tcp=${cfg.bindTcp}"} \
+        --auth=${cfg.auth} \
+        ${concatStringsSep " " cfg.extraOptions}
+    '';
 
     services.xserver.terminateOnReset = false;
 

From 0a1bb6d00f4f855d82d1045563311781b748d3d5 Mon Sep 17 00:00:00 2001
From: Vladyslav Mykhailichenko <dywedir@pm.me>
Date: Tue, 13 Nov 2018 22:54:56 +0200
Subject: [PATCH 1124/1129] alacritty: 0.2.1 -> 0.2.3

---
 pkgs/applications/misc/alacritty/default.nix | 8 ++++----
 1 file changed, 4 insertions(+), 4 deletions(-)

diff --git a/pkgs/applications/misc/alacritty/default.nix b/pkgs/applications/misc/alacritty/default.nix
index 5237e02f15c0..4b8657c55c9a 100644
--- a/pkgs/applications/misc/alacritty/default.nix
+++ b/pkgs/applications/misc/alacritty/default.nix
@@ -42,17 +42,17 @@ let
     libXi
   ];
 in buildRustPackage rec {
-  name = "alacritty-unstable-${version}";
-  version = "0.2.1";
+  name = "alacritty-${version}";
+  version = "0.2.3";
 
   src = fetchFromGitHub {
     owner = "jwilm";
     repo = "alacritty";
     rev = "v${version}";
-    sha256 = "1402axwjz70gg6ylhhm82f1rl6xvxkr1qy0jx3r4r32vzfap1l67";
+    sha256 = "0p9q5cpxw5v2ka1ylaa009sfbncnlrva9yam4hag6npcnd8x4f95";
   };
 
-  cargoSha256 = "0slcyn77svj0686g1vk7kgndzirpkba9jwwybgsdl755r53dswk0";
+  cargoSha256 = "0664fi16kyly8hhfj0hgddsnfdk3y0z31758gvb0xq13ssdb6sv6";
 
   nativeBuildInputs = [
     cmake

From 159b3f2a0df5a7578de1b807c0239d4b60871c61 Mon Sep 17 00:00:00 2001
From: Tobias Happ <tobias.happ@gmx.de>
Date: Tue, 13 Nov 2018 21:59:20 +0100
Subject: [PATCH 1125/1129] teamspeak_server: 3.4.0 -> 3.5.0

---
 .../networking/instant-messengers/teamspeak/server.nix      | 6 +++---
 1 file changed, 3 insertions(+), 3 deletions(-)

diff --git a/pkgs/applications/networking/instant-messengers/teamspeak/server.nix b/pkgs/applications/networking/instant-messengers/teamspeak/server.nix
index e3566c50962b..41e7db569c42 100644
--- a/pkgs/applications/networking/instant-messengers/teamspeak/server.nix
+++ b/pkgs/applications/networking/instant-messengers/teamspeak/server.nix
@@ -1,7 +1,7 @@
 { stdenv, fetchurl, makeWrapper }:
 
 let
-  version = "3.4.0";
+  version = "3.5.0";
   arch = if stdenv.is64bit then "amd64" else "x86";
   libDir = if stdenv.is64bit then "lib64" else "lib";
 in
@@ -15,8 +15,8 @@ stdenv.mkDerivation {
       "http://teamspeak.gameserver.gamed.de/ts3/releases/${version}/teamspeak3-server_linux_${arch}-${version}.tar.bz2"
     ];
     sha256 = if stdenv.is64bit
-      then "12wis5sbbx502g86irhi3g2gvpczbxzjw7z0lw9rk7jagplwhvkx"
-      else "01ajiqizy4f8niqipxccimvvsqlfypr4a28rwxk6zran7m1kjpp6";
+      then "0zk7rbi6mvs2nnsjhv4aizl5ydiyr46ng2i3lr8r78gyb88nxmcv"
+      else "0nahsmcnykgchgv50jb22fin74sab1zl8gy6m6s8mjk570qlvzzm";
   };
 
   buildInputs = [ makeWrapper ];

From 705f87d6162eaf1f851acb811bbe0bfb1efde175 Mon Sep 17 00:00:00 2001
From: Markus Kowalewski <markus.kowalewski@gmail.com>
Date: Tue, 13 Nov 2018 23:26:42 +0100
Subject: [PATCH 1126/1129] welle-io: 1.0-rc2 -> 1.0

---
 pkgs/applications/misc/welle-io/default.nix | 4 ++--
 1 file changed, 2 insertions(+), 2 deletions(-)

diff --git a/pkgs/applications/misc/welle-io/default.nix b/pkgs/applications/misc/welle-io/default.nix
index 410346bce9ad..fae591d7ee03 100644
--- a/pkgs/applications/misc/welle-io/default.nix
+++ b/pkgs/applications/misc/welle-io/default.nix
@@ -3,7 +3,7 @@
 , faad2, rtl-sdr, soapysdr-with-plugins, libusb, fftwSinglePrec }:
 let
 
-  version = "1.0-rc2";
+  version = "1.0";
 
 in stdenv.mkDerivation {
 
@@ -13,7 +13,7 @@ in stdenv.mkDerivation {
     owner = "AlbrechtL";
     repo = "welle.io";
     rev = "V${version}";
-    sha256 = "01x4ldq6lvmdrmxi857594nj9xpn2h7848vvf3f54sh1zrawn4k4";
+    sha256 = "1fsr0c2w16z45mcr85sqmllw1xf2gn6hp6f6fmgx2zfprq8gdmcr";
   };
 
   nativeBuildInputs = [ cmake pkgconfig ];

From 91c130e2f5d6702e195dd6c25abafc5f16b7e505 Mon Sep 17 00:00:00 2001
From: zimbatm <zimbatm@zimbatm.com>
Date: Tue, 13 Nov 2018 12:35:10 +0100
Subject: [PATCH 1127/1129] libredirect: introduce optional setup-hook

This allows to simplify the usage of libredirect inside of nix build
sandboxes. Add "libredirect.hook" to the build inputs to get everything
linked in automaticall. All that's left is to set NIX_REDIRECTS and call
the target program.
---
 pkgs/build-support/libredirect/default.nix | 24 +++++++++++++++-------
 1 file changed, 17 insertions(+), 7 deletions(-)

diff --git a/pkgs/build-support/libredirect/default.nix b/pkgs/build-support/libredirect/default.nix
index e92945a4030c..7caca2fc0033 100644
--- a/pkgs/build-support/libredirect/default.nix
+++ b/pkgs/build-support/libredirect/default.nix
@@ -10,6 +10,8 @@ stdenv.mkDerivation {
 
   libName = "libredirect" + stdenv.targetPlatform.extensions.sharedLibrary;
 
+  outputs = ["out" "hook"];
+
   buildPhase = ''
     $CC -Wall -std=c99 -O3 -shared libredirect.c \
       -o "$libName" -fPIC -ldl
@@ -21,17 +23,25 @@ stdenv.mkDerivation {
 
   installPhase = ''
     install -vD "$libName" "$out/lib/$libName"
+
+    mkdir -p "$hook/nix-support"
+    cat <<SETUP_HOOK > "$hook/nix-support/setup-hook"
+    ${if stdenv.isDarwin then ''
+    export DYLD_INSERT_LIBRARIES="$out/lib/$libName"
+    export DYLD_FORCE_FLAT_NAMESPACE=1
+    '' else ''
+    export LD_PRELOAD="$out/lib/$libName"
+    ''}
+    SETUP_HOOK
   '';
 
   doInstallCheck = true;
 
-  installCheckPhase = if stdenv.isDarwin then ''
-    NIX_REDIRECTS="/foo/bar/test=${coreutils}/bin/true" \
-    DYLD_INSERT_LIBRARIES="$out/lib/$libName" \
-    DYLD_FORCE_FLAT_NAMESPACE=1 ./test
-  '' else ''
-    NIX_REDIRECTS="/foo/bar/test=${coreutils}/bin/true" \
-    LD_PRELOAD="$out/lib/$libName" ./test
+  installCheckPhase = ''
+    (
+      source "$hook/nix-support/setup-hook"
+      NIX_REDIRECTS="/foo/bar/test=${coreutils}/bin/true" ./test
+    )
   '';
 
   meta = {

From d04a1265a118b0348511549af659c6cbb9b5315d Mon Sep 17 00:00:00 2001
From: zimbatm <zimbatm@zimbatm.com>
Date: Tue, 13 Nov 2018 15:56:46 +0100
Subject: [PATCH 1128/1129] libredirect: set install_name on Darwin

fixes https://github.com/NixOS/nixpkgs/pull/50246#issuecomment-437975038
---
 pkgs/build-support/libredirect/default.nix | 8 +++++---
 1 file changed, 5 insertions(+), 3 deletions(-)

diff --git a/pkgs/build-support/libredirect/default.nix b/pkgs/build-support/libredirect/default.nix
index 7caca2fc0033..6e54e2a696c5 100644
--- a/pkgs/build-support/libredirect/default.nix
+++ b/pkgs/build-support/libredirect/default.nix
@@ -1,4 +1,4 @@
-{ stdenv, coreutils }:
+{ stdenv, lib, coreutils }:
 
 stdenv.mkDerivation {
   name = "libredirect-0";
@@ -13,8 +13,10 @@ stdenv.mkDerivation {
   outputs = ["out" "hook"];
 
   buildPhase = ''
-    $CC -Wall -std=c99 -O3 -shared libredirect.c \
-      -o "$libName" -fPIC -ldl
+    $CC -Wall -std=c99 -O3 -fPIC -ldl -shared \
+      ${lib.optionalString stdenv.isDarwin "-Wl,-install_name,$out/lib/$libName"} \
+      -o "$libName" \
+      libredirect.c
 
     if [ -n "$doInstallCheck" ]; then
       $CC -Wall -std=c99 -O3 test.c -o test

From 4b5ffcb964b48c2754aa8964699b339840f507d3 Mon Sep 17 00:00:00 2001
From: Herwig Hochleitner <herwig@bendlas.net>
Date: Wed, 14 Nov 2018 01:12:37 +0100
Subject: [PATCH 1129/1129] chromium: 70.0.3538.77 -> 70.0.3538.102

---
 .../browsers/chromium/upstream-info.nix        | 18 +++++++++---------
 1 file changed, 9 insertions(+), 9 deletions(-)

diff --git a/pkgs/applications/networking/browsers/chromium/upstream-info.nix b/pkgs/applications/networking/browsers/chromium/upstream-info.nix
index 8162f43776da..9f6e304c21e6 100644
--- a/pkgs/applications/networking/browsers/chromium/upstream-info.nix
+++ b/pkgs/applications/networking/browsers/chromium/upstream-info.nix
@@ -1,18 +1,18 @@
 # This file is autogenerated from update.sh in the same directory.
 {
   beta = {
-    sha256 = "0kkdfp5f3gmzngfj1nfw023bpyvm47h94k9rpwml2kxlijswd1gl";
-    sha256bin64 = "13ghx5ysl8f2iphdvjh698q4jksh765ljjrd74m6x0ih6qm0ksaq";
-    version = "71.0.3578.20";
+    sha256 = "04y78dqm19cr5929l727fk0jqqsdfyrdv50gippg32dplvw0r4fw";
+    sha256bin64 = "1rfclq9vwj61pv1sqpa4v26iby02j05lad673c79f0032v2v2r43";
+    version = "71.0.3578.44";
   };
   dev = {
-    sha256 = "1d7q8hbqbxy2izdvv4d9126ljiglsfc3w7wns3zbbbiyqa2rj00y";
-    sha256bin64 = "0v6yahsvsgxcqg6k84lgr589rnx9af1r2axn7cggyn1a2lk63jck";
-    version = "72.0.3590.0";
+    sha256 = "1d18957kwy3hp3dhgahip3pgjhvvadix5h3mk2d7w6zdj3l8c8kq";
+    sha256bin64 = "1yny1hyis91ajn7b8v9b4fzgswzwng3rndf1jb807xd6jd461afz";
+    version = "72.0.3608.4";
   };
   stable = {
-    sha256 = "0j84556r3m4igigqsx9zvw4kvbn4psfsi7m8xhcvfxc39ingh569";
-    sha256bin64 = "082cf9d1wm36w4i09ai4xnprvxfqdar6cbgsxz5q5srd41mqdy6p";
-    version = "70.0.3538.77";
+    sha256 = "0amc3czac897mb80qcwwladmhg2yps8r2c359nzyj7i7bq1m992d";
+    sha256bin64 = "1did6kp7dhlqp7rarvly7ywb9n9hnhhb3zgpkh3yp3f2skqrr5w8";
+    version = "70.0.3538.102";
   };
 }