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rPackages: introduce packagesRequiringHome override

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Some R packages require access to a home directory to pass install tests. Extend
r-modules to allow creating a temporary home directory for packages with
such requirements.
This commit is contained in:
Thomas Churchman 2021-10-11 09:23:42 +02:00 committed by GitHub
parent 40f95ae12a
commit c417b44d83
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1 changed files with 44 additions and 8 deletions
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52
pkgs/development/r-modules/default.nix
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@ -158,6 +158,38 @@ let
in
builtins.listToAttrs nameValuePairs;
# Overrides package definition requiring a home directory to install or to
# run tests.
# For example,
#
# overrideRequireHome [
# "foo"
# ] old
#
# results in
#
# {
# foo = old.foo.overrideAttrs (oldAttrs: {
# preInstall = ''
# ${oldAttrs.preInstall or ""}
# export HOME=$(mktemp -d)
# '';
# });
# }
overrideRequireHome = packageNames: old:
let
nameValuePairs = map (name: {
inherit name;
value = (builtins.getAttr name old).overrideAttrs (oldAttrs: {
preInstall = ''
${oldAttrs.preInstall or ""}
export HOME=$(mktemp -d)
'';
});
}) packageNames;
in
builtins.listToAttrs nameValuePairs;
# Overrides package definition to skip check.
# For example,
#
@ -211,13 +243,14 @@ let
defaultOverrides = old: new:
let old0 = old; in
let
old1 = old0 // (overrideRequireX packagesRequireingX old0);
old2 = old1 // (overrideSkipCheck packagesToSkipCheck old1);
old3 = old2 // (overrideRDepends packagesWithRDepends old2);
old4 = old3 // (overrideNativeBuildInputs packagesWithNativeBuildInputs old3);
old5 = old4 // (overrideBuildInputs packagesWithBuildInputs old4);
old6 = old5 // (overrideBroken brokenPackages old5);
old = old6;
old1 = old0 // (overrideRequireX packagesRequiringX old0);
old2 = old1 // (overrideRequireHome packagesRequiringHome old1);
old3 = old2 // (overrideSkipCheck packagesToSkipCheck old2);
old4 = old3 // (overrideRDepends packagesWithRDepends old3);
old5 = old4 // (overrideNativeBuildInputs packagesWithNativeBuildInputs old4);
old6 = old5 // (overrideBuildInputs packagesWithBuildInputs old5);
old7 = old6 // (overrideBroken brokenPackages old6);
old = old7;
in old // (otherOverrides old new);
# Recursive override pattern.
@ -480,7 +513,7 @@ let
csaw = with pkgs; [ zlib.dev curl ];
};
packagesRequireingX = [
packagesRequiringX = [
"accrual"
"ade4TkGUI"
"analogue"
@ -670,6 +703,9 @@ let
"x12GUI"
];
packagesRequiringHome = [
];
packagesToSkipCheck = [
"Rmpi" # tries to run MPI processes
"pbdMPI" # tries to run MPI processes