Merge pull request #119703 from mweinelt/python/deepdiff

pkgs/development/python-modules/clevercsv/default.nix

@@ -0,0 +1,60 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, chardet
+, cleo
+, clikit
+, pandas
+, regex
+, tabview
+, python
+}:
+
+buildPythonPackage rec {
+  pname = "clevercsv";
+  version = "0.6.7";
+  format = "setuptools";
+
+  src = fetchFromGitHub {
+    owner = "alan-turing-institute";
+    repo = "CleverCSV";
+    rev = "v${version}";
+    sha256 = "0j3959bji48pkp0vnk7yls5l75ywjl77jdkvzs62n5mi5lky88p9";
+  };
+
+  propagatedBuildInputs = [
+    chardet
+    cleo
+    clikit
+    pandas
+    regex
+    tabview
+  ];
+
+  pythonImportsCheck = [
+    "clevercsv"
+    "clevercsv.cparser"
+  ];
+
+  checkPhase = ''
+    # by linking the installed version the tests also have access to compiled native libraries
+    rm -r clevercsv
+    ln -s $out/${python.sitePackages}/clevercsv/ clevercsv
+    # their ci only runs unit tests, there are also integration and fuzzing tests
+    ${python.interpreter} -m unittest discover -v -f -s ./tests/test_unit
+  '';
+
+  meta = with lib; {
+    description = "CleverCSV is a Python package for handling messy CSV files";
+    longDescription = ''
+       CleverCSV is a Python package for handling messy CSV files. It provides
+       a drop-in replacement for the builtin CSV module with improved dialect
+       detection, and comes with a handy command line application for working
+       with CSV files.
+    '';
+    homepage = "https://github.com/alan-turing-institute/CleverCSV";
+    changelog = "https://github.com/alan-turing-institute/CleverCSV/blob/master/CHANGELOG.md";
+    license = licenses.mit;
+    maintainers = with maintainers; [ hexa ];
+  };
+}

pkgs/development/python-modules/deepdiff/default.nix

@@ -1,34 +1,43 @@
 { lib
 , buildPythonPackage
-, fetchPypi
-, mock
-, jsonpickle
-, mmh3
+, fetchFromGitHub
+, click
 , ordered-set
+, clevercsv
+, jsonpickle
 , numpy
 , pytestCheckHook
+, pyyaml
 }:
 
 buildPythonPackage rec {
   pname = "deepdiff";
-  version = "5.2.3";
+  version = "5.3.0";
+  format = "setuptools";
 
-  src = fetchPypi {
-    inherit pname version;
-    sha256 = "ae2cb98353309f93fbfdda4d77adb08fb303314d836bb6eac3d02ed71a10b40e";
+  # pypi source does not contain all fixtures required for tests
+  src = fetchFromGitHub {
+    owner = "seperman";
+    repo = "deepdiff";
+    rev = version;
+    sha256 = "1izw2qpd93nj948zakamjn7q7dlmmr7sapg0c65hxvs0nmij8sl4";
   };
 
-  # # Extra packages (may not be necessary)
-  checkInputs = [
-    mock
-    numpy
-    pytestCheckHook
+  propagatedBuildInputs = [
+    click
+    ordered-set
   ];
 
-  propagatedBuildInputs = [
+  pythonImportsCheck = [
+    "deepdiff"
+  ];
+
+  checkInputs = [
+    clevercsv
     jsonpickle
-    mmh3
-    ordered-set
+    numpy
+    pytestCheckHook
+    pyyaml
   ];
 
   meta = with lib; {

pkgs/development/python-modules/tabview/default.nix

@@ -0,0 +1,31 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, python
+}:
+
+buildPythonPackage rec {
+  pname = "tabview";
+  version = "1.4.4";
+  format = "setuptools";
+
+  # newest release only available as wheel on pypi
+  src = fetchFromGitHub {
+    owner = "TabViewer";
+    repo = "tabview";
+    rev = version;
+    sha256 = "1d1l8fhdn3w2zg7wakvlmjmgjh9lh9h5fal1clgyiqmhfix4cn4m";
+  };
+
+  checkPhase = ''
+    ${python.interpreter} -m unittest discover
+  '';
+
+  meta = with lib; {
+    description = "Python curses command line CSV and tabular data viewer";
+    homepage = "https://github.com/TabViewer/tabview";
+    changelog = "https://github.com/TabViewer/tabview/blob/main/CHANGELOG.rst";
+    license = licenses.mit;
+    maintainers = with maintainers; [ hexa ];
+  };
+}

pkgs/top-level/all-packages.nix

@@ -2017,6 +2017,8 @@ in
 
   clasp = callPackage ../tools/misc/clasp { };
 
+  clevercsv = with python3Packages; toPythonApplication clevercsv;
+
   clevis = callPackage ../tools/security/clevis {
     asciidoc = asciidoc-full;
   };
@@ -7504,6 +7506,8 @@ in
 
   tab = callPackage ../tools/text/tab { };
 
+  tabview = with python3Packages; toPythonApplication tabview;
+
   tautulli = python3Packages.callPackage ../servers/tautulli { };
 
   pleroma-otp = callPackage ../servers/pleroma-otp { };
@@ -28574,6 +28578,8 @@ in
 
   dcm2niix = callPackage ../applications/science/biology/dcm2niix { };
 
+  deepdiff = with python3Packages; toPythonApplication deepdiff;
+
   deepsea = callPackage ../tools/security/deepsea { };
 
   deeptools = callPackage ../applications/science/biology/deeptools { python = python3; };

pkgs/top-level/python-packages.nix

@@ -1343,6 +1343,8 @@ in {
 
   cleo = callPackage ../development/python-modules/cleo { };
 
+  clevercsv = callPackage ../development/python-modules/clevercsv { };
+
   clf = callPackage ../development/python-modules/clf { };
 
   click = callPackage ../development/python-modules/click { };
@@ -7689,6 +7691,8 @@ in {
 
   tabulate = callPackage ../development/python-modules/tabulate { };
 
+  tabview = callPackage ../development/python-modules/tabview { };
+
   tadasets = callPackage ../development/python-modules/tadasets { };
 
   tag-expressions = callPackage ../development/python-modules/tag-expressions { };