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python312Packages.pyfaidx: 0.8.1.2 -> 0.8.1.3 (#347866)

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Justin Bedő 2024-10-12 11:00:55 +11:00 committed by GitHub
commit b418f9bd8a
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1 changed files with 27 additions and 21 deletions
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48
pkgs/development/python-modules/pyfaidx/default.nix
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@ -1,26 +1,28 @@
{
lib,
buildPythonPackage,
fetchPypi,
fetchFromGitHub,
glibcLocales,
importlib-metadata,
numpy,
packaging,
htslib,
fsspec,
pytestCheckHook,
pythonOlder,
biopython,
setuptools,
setuptools-scm,
}:
buildPythonPackage rec {
pname = "pyfaidx";
version = "0.8.1.2";
version = "0.8.1.3";
pyproject = true;
disabled = pythonOlder "3.7";
src = fetchPypi {
inherit pname version;
hash = "sha256-2EUkcEVbHnePk5aUR9uOok3rRiTHxAdpUWRZy2+HvDM=";
src = fetchFromGitHub {
owner = "mdshw5";
repo = "pyfaidx";
rev = "refs/tags/v${version}";
hash = "sha256-PKcopIu/0ko4Jl2+G0ZivZXvMwACeIFFFlPt5dlDDfQ=";
};
build-system = [
@ -28,27 +30,31 @@ buildPythonPackage rec {
setuptools-scm
];
dependencies = [ importlib-metadata ];
nativeCheckInputs = [
glibcLocales
numpy
pytestCheckHook
dependencies = [
importlib-metadata
packaging
];
disabledTestPaths = [
# FileNotFoundError: [Errno 2] No such file or directory: 'data/genes.fasta.gz'
"tests/test_Fasta_bgzip.py"
nativeCheckInputs = [
pytestCheckHook
biopython
htslib
fsspec
glibcLocales
];
pythonImportsCheck = [ "pyfaidx" ];
meta = with lib; {
preCheck = ''
bgzip --keep tests/data/genes.fasta
'';
meta = {
description = "Python classes for indexing, retrieval, and in-place modification of FASTA files using a samtools compatible index";
homepage = "https://github.com/mdshw5/pyfaidx";
changelog = "https://github.com/mdshw5/pyfaidx/releases/tag/v${version}";
license = licenses.bsd3;
maintainers = with maintainers; [ jbedo ];
license = lib.licenses.bsd3;
maintainers = with lib.maintainers; [ jbedo ];
mainProgram = "faidx";
};
}