python310Packages.tables: Fix build, update tests

The build now requires blosc2, packaged in the previous commit.

The tests via pytest were stuck, so I looked up how they run their tests
and adapted our check phase.

pkgs/development/python-modules/tables/default.nix

@@ -3,6 +3,7 @@
 , fetchpatch
 , buildPythonPackage
 , pythonOlder
+, blosc2
 , bzip2
 , c-blosc
 , cython
@@ -11,8 +12,10 @@
 , numpy
 , numexpr
 , packaging
+, sphinx
   # Test inputs
-, pytestCheckHook
+, python
+, pytest
 }:
 
 buildPythonPackage rec {
@@ -25,7 +28,11 @@ buildPythonPackage rec {
     hash = "sha256-NPP6I2bOILGPHfVzp3wdJzBs4fKkHZ+e/2IbUZLqh4g=";
   };
 
-  nativeBuildInputs = [ cython ];
+  nativeBuildInputs = [
+    blosc2
+    cython
+    sphinx
+  ];
 
   buildInputs = [
     bzip2
@@ -34,6 +41,7 @@ buildPythonPackage rec {
     lzo
   ];
   propagatedBuildInputs = [
+    blosc2
     numpy
     numexpr
     packaging  # uses packaging.version at runtime
@@ -46,6 +54,8 @@ buildPythonPackage rec {
     substituteInPlace tables/tests/test_suite.py \
       --replace "return 0" "assert result.wasSuccessful(); return 0" \
       --replace "return 1" "assert result.wasSuccessful(); return 1"
+    substituteInPlace requirements.txt \
+      --replace "blosc2~=2.0.0" "blosc2"
   '';
 
   # Regenerate C code with Cython
@@ -60,15 +70,21 @@ buildPythonPackage rec {
     "--blosc=${lib.getDev c-blosc}"
   ];
 
-  nativeCheckInputs = [ pytestCheckHook ];
+  nativeCheckInputs = [
+    pytest
+  ];
+
   preCheck = ''
     cd ..
   '';
-  # Runs the test suite as one single test via unittest. The whole "heavy" test suite supposedly takes ~5 hours to run.
-  pytestFlagsArray = [
-    "--pyargs"
-    "tables.tests.test_suite"
-  ];
+
+  # Runs the light (yet comprehensive) subset of the test suite.
+  # The whole "heavy" test suite supposedly takes ~4 hours to run.
+  checkPhase = ''
+    runHook preCheck
+    ${python.interpreter} -m tables.tests.test_all
+    runHook postCheck
+  '';
 
   pythonImportsCheck = [ "tables" ];