Merge pull request #208665 from ifurther/gluevis

Python3Packages.glueviz: init at 1.14.1

pkgs/development/python-modules/echo/default.nix

@@ -0,0 +1,63 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, pythonOlder
+, setuptools
+, setuptools-scm
+, libxcrypt
+, numpy
+, qt6
+, qtpy
+, pyqt6
+, pytestCheckHook
+, pytest-cov
+}:
+
+buildPythonPackage rec {
+  pname = "echo";
+  version = "0.8.0";
+
+  disabled = pythonOlder "3.6";
+
+  src = fetchFromGitHub {
+    owner = "glue-viz";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "sha256-0FmUA7kOFSRZXwbj8d7asujBPOjE2pFhu6TDNSGD4r0=";
+  };
+
+  nativeBuildInputs = [ setuptools setuptools-scm qt6.wrapQtAppsHook ];
+
+  buildInputs = lib.optionals (pythonOlder "3.9") [
+    libxcrypt
+  ];
+
+  propagatedBuildInputs = [
+    qt6.qtconnectivity
+    qt6.qtbase
+    qt6.qttools
+    pyqt6
+    numpy
+    qtpy
+  ];
+
+  env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
+
+  # collecting ... qt.qpa.xcb: could not connect to display
+  # qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in "" even though it was found.
+  doCheck = false;
+
+  nativeCheckInputs = [
+    pytestCheckHook
+    pytest-cov
+  ];
+
+  pythonImportsCheck = [ "echo" ];
+
+  meta = with lib; {
+    homepage = "https://github.com/glue-viz/echo";
+    description = "Callback Properties in Python";
+    license = licenses.mit;
+    maintainers = with maintainers; [ ifurther ];
+  };
+}

pkgs/development/python-modules/fast-histogram/default.nix

@@ -0,0 +1,54 @@
+{ lib
+, buildPythonPackage
+, pytestCheckHook
+, fetchFromGitHub
+, python
+, pythonOlder
+, setuptools
+, setuptools-scm
+, numpy
+, wheel
+, hypothesis
+, pytest-cov
+}:
+
+buildPythonPackage rec {
+  pname = "fast-histogram";
+  version = "0.12";
+
+  disabled = pythonOlder "3.6";
+
+  src = fetchFromGitHub {
+    owner = "astrofrog";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "sha256-Cz4BgbtxbUPxL2NSzvZYjbYIN4KUuliUV0bXRRtyvfM=";
+  };
+
+  nativeBuildInputs = [
+    setuptools
+    setuptools-scm
+    wheel
+  ];
+
+  propagatedBuildInputs = [ numpy ];
+
+  nativeCheckInputs = [
+    pytestCheckHook
+    hypothesis
+    pytest-cov
+  ];
+
+  pytestFlagsArray = [ "${builtins.placeholder "out"}/${python.sitePackages}" ];
+
+  env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
+
+  pythonImportsCheck = [ "fast_histogram" ];
+
+  meta = with lib; {
+    homepage = "https://github.com/astrofrog/fast-histogram";
+    description = "Fast 1D and 2D histogram functions in Python";
+    license = licenses.bsd2;
+    maintainers = with maintainers; [ ifurther ];
+  };
+}

pkgs/development/python-modules/glueviz/default.nix

@@ -0,0 +1,87 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, pythonOlder
+, dill
+, astropy
+, numpy
+, pandas
+, qt6
+, pyqt6
+, pyqt-builder
+, qtconsole
+, setuptools
+, setuptools-scm
+, scipy
+, ipython
+, ipykernel
+, h5py
+, matplotlib
+, xlrd
+, mpl-scatter-density
+, pvextractor
+, openpyxl
+, echo
+, pytest
+, pytest-flakes
+, pytest-cov
+}:
+
+buildPythonPackage rec {
+  pname = "glueviz";
+  version = "1.14.1";
+
+  disabled = pythonOlder "3.7";
+
+  src = fetchFromGitHub {
+    owner = "glue-viz";
+    repo = "glue";
+    rev = "refs/tags/v${version}";
+    sha256 = "sha256-pHUcvyDziE7l0foEz7cygMuAwggnIWzsQy9SFZCDkXA=";
+  };
+
+  buildInputs = [ pyqt-builder ];
+  nativeBuildInputs = [ setuptools setuptools-scm qt6.wrapQtAppsHook ];
+  propagatedBuildInputs = [
+    astropy
+    dill
+    setuptools
+    scipy
+    numpy
+    matplotlib
+    pandas
+    pyqt6
+    qtconsole
+    ipython
+    ipykernel
+    h5py
+    xlrd
+    mpl-scatter-density
+    pvextractor
+    openpyxl
+    echo
+  ];
+
+  dontConfigure = true;
+
+  env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
+
+  # collecting ... qt.qpa.xcb: could not connect to display
+  # qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in "" even though it was found.
+  doCheck = false;
+
+  nativeCheckInputs = [ pytest pytest-flakes pytest-cov ];
+
+  pythonImportsCheck = [ "glue" ];
+
+  preFixup = ''
+    makeWrapperArgs+=("''${qtWrapperArgs[@]}")
+  '';
+
+  meta = with lib; {
+    homepage = "https://glueviz.org";
+    description = "Linked Data Visualizations Across Multiple Files";
+    license = licenses.bsd3; # https://github.com/glue-viz/glue/blob/main/LICENSE
+    maintainers = with maintainers; [ ifurther ];
+  };
+}

pkgs/development/python-modules/mpl-scatter-density/default.nix

@@ -0,0 +1,67 @@
+{ lib
+, buildPythonPackage
+, pytestCheckHook
+, fetchFromGitHub
+, fetchpatch
+, pythonOlder
+, setuptools-scm
+, setuptools
+, fast-histogram
+, matplotlib
+, numpy
+, wheel
+, pytest-mpl
+}:
+
+buildPythonPackage rec {
+  pname = "mpl-scatter-density";
+  version = "0.7";
+
+  disabled = pythonOlder "3.6";
+
+  src = fetchFromGitHub {
+    owner = "astrofrog";
+    repo = pname;
+    rev = "refs/tags/v${version}";
+    sha256 = "sha256-MMxM+iv5p9ZLcBpqa3tBBPbsMM/PTg6BXaDpGgSw+DE=";
+  };
+
+  patches = [
+    # https://github.com/astrofrog/mpl-scatter-density/pull/37
+    (fetchpatch {
+      name = "distutils-removal.patch";
+      url = "https://github.com/ifurther/mpl-scatter-density/commit/6feedabe1e82da67d8eec46a80eb370d9f334251.patch";
+      sha256 = "sha256-JqWlSm8mIwqjRPa+kMEaKipJyzGEO+gJK+Q045N1MXA=";
+    })
+  ];
+
+  nativeBuildInputs = [
+    setuptools
+    setuptools-scm
+    wheel
+  ];
+
+  propagatedBuildInputs = [ matplotlib numpy fast-histogram ];
+
+  env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
+
+  nativeCheckInputs = [
+    pytestCheckHook
+    pytest-mpl
+  ];
+
+  disabledTests = [
+    # AssertionError: (240, 240) != (216, 216)
+    # Erroneous pinning of figure DPI, sensitive to runtime environment
+    "test_default_dpi"
+  ];
+
+  pythonImportsCheck = [ "mpl_scatter_density" ];
+
+  meta = with lib; {
+    homepage = "https://github.com/astrofrog/mpl-scatter-density";
+    description = "Fast scatter density plots for Matplotlib";
+    license = licenses.bsd2;
+    maintainers = with maintainers; [ ifurther ];
+  };
+}

pkgs/development/python-modules/pvextractor/default.nix

@@ -0,0 +1,61 @@
+{ lib
+, buildPythonPackage
+, fetchFromGitHub
+, pythonOlder
+, astropy
+, qtpy
+, pyqt6
+, pyqt-builder
+, setuptools
+, setuptools-scm
+, scipy
+, matplotlib
+, spectral-cube
+, pytestCheckHook
+, pytest-astropy
+}:
+
+buildPythonPackage rec {
+  pname = "pvextractor";
+  version = "0.3";
+
+  disabled = pythonOlder "3.5";
+
+  src = fetchFromGitHub {
+    owner = "radio-astro-tools";
+    repo = pname;
+    rev = "v${version}";
+    sha256 = "sha256-HYus2Gk3hzKq+3lJLOJQ+EE6LeO+DrvqLK3NpqrUYeI=";
+  };
+
+  buildInputs = [ pyqt-builder ];
+  nativeBuildInputs = [ setuptools setuptools-scm ];
+  propagatedBuildInputs = [
+    astropy
+    scipy
+    matplotlib
+    pyqt6
+    qtpy
+    spectral-cube
+  ];
+
+  env.SETUPTOOLS_SCM_PRETEND_VERSION = version;
+
+  # collecting ... qt.qpa.xcb: could not connect to display
+  # qt.qpa.plugin: Could not load the Qt platform plugin "xcb" in "" even though it was found.
+  doCheck = false;
+
+  nativeCheckInputs = [
+    pytestCheckHook
+    pytest-astropy
+  ];
+
+  pythonImportsCheck = [ "pvextractor" ];
+
+  meta = with lib; {
+    homepage = "http://pvextractor.readthedocs.io";
+    description = "Position-velocity diagram extractor";
+    license = licenses.bsd3;
+    maintainers = with maintainers; [ ifurther ];
+  };
+}

pkgs/top-level/python-packages.nix

@@ -3441,6 +3441,8 @@ self: super: with self; {
 
   ecdsa = callPackage ../development/python-modules/ecdsa { };
 
+  echo = callPackage ../development/python-modules/echo { };
+
   ecoaliface = callPackage ../development/python-modules/ecoaliface { };
 
   ecos = callPackage ../development/python-modules/ecos { };
@@ -3803,6 +3805,8 @@ self: super: with self; {
 
   fastapi-mail = callPackage ../development/python-modules/fastapi-mail { };
 
+  fast-histogram = callPackage ../development/python-modules/fast-histogram { };
+
   fastavro = callPackage ../development/python-modules/fastavro { };
 
   fastbencode = callPackage ../development/python-modules/fastbencode { };
@@ -4508,6 +4512,8 @@ self: super: with self; {
 
   glom = callPackage ../development/python-modules/glom { };
 
+  glueviz = callPackage ../development/python-modules/glueviz { };
+
   glymur = callPackage ../development/python-modules/glymur { };
 
   gmpy2 = callPackage ../development/python-modules/gmpy2 { };
@@ -7074,6 +7080,8 @@ self: super: with self; {
 
   mplleaflet = callPackage ../development/python-modules/mplleaflet { };
 
+  mpl-scatter-density = callPackage ../development/python-modules/mpl-scatter-density { };
+
   mpmath = callPackage ../development/python-modules/mpmath { };
 
   mpris-server = callPackage ../development/python-modules/mpris-server { };
@@ -9696,6 +9704,8 @@ self: super: with self; {
 
   pushover-complete = callPackage ../development/python-modules/pushover-complete { };
 
+  pvextractor = callPackage ../development/python-modules/pvextractor { };
+
   pvlib = callPackage ../development/python-modules/pvlib { };
 
   pvo = callPackage ../development/python-modules/pvo { };