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Merge pull request #316782 from aaronjheng/poretools

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poretools: remove
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Aleksana 2024-06-18 13:41:58 +08:00 committed by GitHub
commit a12b153874
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3 changed files with 1 additions and 25 deletions
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23
pkgs/applications/science/biology/poretools/default.nix
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@ -1,23 +0,0 @@
{ lib, python2Packages, fetchFromGitHub }:
python2Packages.buildPythonPackage rec {
pname = "poretools";
version = "unstable-2016-07-10";
src = fetchFromGitHub {
repo = pname;
owner = "arq5x";
rev = "e426b1f09e86ac259a00c261c79df91510777407";
sha256 = "0bglj833wxpp3cq430p1d3xp085ls221js2y90w7ir2x5ay8l7am";
};
propagatedBuildInputs = [ python2Packages.h5py python2Packages.matplotlib python2Packages.seaborn python2Packages.pandas ];
meta = {
description = "Toolkit for working with nanopore sequencing data from Oxford Nanopore";
license = lib.licenses.mit;
homepage = "https://poretools.readthedocs.io/en/latest/";
maintainers = [ lib.maintainers.rybern ];
broken = true; # Build error: h5py-3.9.0 not supported for interpreter python2.7
};
}

1
pkgs/top-level/aliases.nix
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@ -1030,6 +1030,7 @@ mapAliases ({
pltScheme = racket; # just to be sure
pmdk = throw "'pmdk' is discontinued, no further support or maintenance is planned by upstream"; # Added 2023-02-06
pomotroid = throw "pomotroid has been removed from nixpkgs, because it depended on an insecure version of electron"; # Added 2023-09-12
poretools = throw "poretools has been removed from nixpkgs, as it was broken and unmaintained"; # Added 2024-06-03
powerdns = pdns; # Added 2022-03-28
# postgresql plugins

2
pkgs/top-level/all-packages.nix
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@ -11903,8 +11903,6 @@ with pkgs;
popfile = callPackage ../tools/text/popfile { };
poretools = callPackage ../applications/science/biology/poretools { };
porsmo = callPackage ../applications/misc/porsmo { };
pantum-driver = callPackage ../misc/drivers/pantum-driver { };