diff --git a/pkgs/applications/science/chemistry/pymol/default.nix b/pkgs/applications/science/chemistry/pymol/default.nix index b1bd01fb2f7f..2169aef4fc08 100644 --- a/pkgs/applications/science/chemistry/pymol/default.nix +++ b/pkgs/applications/science/chemistry/pymol/default.nix @@ -1,15 +1,10 @@ -{ stdenv, fetchurl, makeDesktopItem +{ lib, stdenv, fetchurl, fetchFromGitHub, makeDesktopItem , python3, python3Packages -, glew, freeglut, libpng, libxml2, tk, freetype, msgpack }: +, glew, glm, freeglut, libpng, libxml2, tk, freetype, msgpack }: -with stdenv.lib; - let pname = "pymol"; - ver_maj = "2"; - ver_min = "1"; - version = "${ver_maj}.${ver_min}.0"; description = "A Python-enhanced molecular graphics tool"; desktopItem = makeDesktopItem { @@ -22,15 +17,20 @@ let categories = "Graphics;Education;Science;Chemistry;"; }; in -python3Packages.buildPythonApplication { - name = "pymol-${version}"; - src = fetchurl { - url = "mirror://sourceforge/project/pymol/pymol/${ver_maj}/pymol-v${version}.tar.bz2"; - sha256 = "1qpacd5w4r9a0nm5iqmkd92ym3ai00dp7v61cwd6jgakk6wfps3s"; +python3Packages.buildPythonApplication rec { + inherit pname; + version = "2.3.0"; + src = fetchFromGitHub { + owner = "schrodinger"; + repo = "pymol-open-source"; + rev = "v${version}"; + sha256 = "175cqi6gfmvv49i3ws19254m7ljs53fy6y82fm1ywshq2h2c93jh"; }; - buildInputs = [ python3Packages.numpy glew freeglut libpng libxml2 tk freetype msgpack ]; - NIX_CFLAGS_COMPILE = "-I ${libxml2.dev}/include/libxml2"; + buildInputs = [ python3Packages.numpy glew glm freeglut libpng libxml2 tk freetype msgpack ]; + NIX_CFLAGS_COMPILE = "-I ${libxml2.dev}/include/libxml2 -Wno-error=format-security"; + + setupPyBuildFlags = [ "--glut" ]; installPhase = '' python setup.py install --home=$out @@ -40,13 +40,12 @@ python3Packages.buildPythonApplication { postInstall = with python3Packages; '' wrapProgram $out/bin/pymol \ - --prefix PYTHONPATH : ${makeSearchPathOutput "lib" python3.sitePackages [ Pmw tkinter ]} + --prefix PYTHONPATH : ${lib.makeSearchPathOutput "lib" python3.sitePackages [ Pmw tkinter ]} ''; meta = { description = description; homepage = https://www.pymol.org/; - license = licenses.psfl; - broken = true; + license = lib.licenses.psfl; }; }