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Merge pull request #277654 from bcdarwin/update-gpy

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python311Packages.gpy: 1.10.0 -> 1.13.0
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Mario Rodas 2024-01-06 08:46:14 -05:00 committed by GitHub
commit 8efaea8031
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1 changed files with 29 additions and 23 deletions
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52
pkgs/development/python-modules/gpy/default.nix
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@ -1,53 +1,59 @@
{ lib, stdenv
{ lib
, stdenv
, buildPythonPackage
, fetchPypi
, fetchFromGitHub
, pythonOlder
, pytestCheckHook
, setuptools
, numpy
, scipy
, six
, paramz
, matplotlib
, cython
, nose
}:
buildPythonPackage rec {
pname = "GPy";
version = "1.10.0";
version = "1.13.0";
pyproject = true;
src = fetchPypi {
inherit pname version;
sha256 = "a2b793ef8d0ac71739e7ba1c203bc8a5afa191058b42caa617e0e29aa52aa6fb";
disabled = pythonOlder "3.9";
# 1.13.0 not on PyPI yet
src = fetchFromGitHub {
owner = "SheffieldML";
repo = "GPy";
rev = "refs/tags/v.${version}";
hash = "sha256-2HKKKBD/JFSeLQGvvgObxqxv9IHEKFnpaejdKbYZbmY=";
};
nativeBuildInputs = [ setuptools ];
buildInputs = [ cython ];
propagatedBuildInputs = [ numpy scipy six paramz matplotlib ];
nativeCheckInputs = [ nose ];
propagatedBuildInputs = [
numpy
scipy
six
paramz
matplotlib
];
nativeCheckInputs = [ pytestCheckHook ];
# $ nosetests GPy/testing/*.py
# => Ran 483 tests in 112.146s (on 8 cores)
# So instead, run shorter set of tests
checkPhase = ''
nosetests GPy/testing/linalg_test.py
'';
# Rebuild cython-generated .c files since the included
# ones were built with an older version of cython that is
# incompatible with python3.9
# Rebuild cython-generated .c files to ensure compatibility
preBuild = ''
for fn in $(find . -name '*.pyx'); do
echo $fn | sed 's/\.\.pyx$/\.c/' | xargs ${cython}/bin/cython -3
done
'';
pythonImportsCheck = [
"GPy"
];
pythonImportsCheck = [ "GPy" ];
meta = with lib; {
description = "Gaussian process framework in Python";
homepage = "https://sheffieldml.github.io/GPy";
changelog = "https://github.com/SheffieldML/GPy/releases/tag/v.${version}";
license = licenses.bsd3;
maintainers = with maintainers; [ bcdarwin ];
broken = stdenv.isDarwin; # See inscrutable error message here: https://github.com/NixOS/nixpkgs/pull/107653#issuecomment-751527547
broken = stdenv.isDarwin; # See inscrutable error message here: https://github.com/NixOS/nixpkgs/pull/107653#issuecomment-751527547
};
}