diff --git a/pkgs/applications/science/biology/samtools/default.nix b/pkgs/applications/science/biology/samtools/default.nix index 99210092a154..98b0394c35f1 100644 --- a/pkgs/applications/science/biology/samtools/default.nix +++ b/pkgs/applications/science/biology/samtools/default.nix @@ -1,4 +1,4 @@ -{ lib, stdenv, fetchurl, zlib, htslib, perl, ncurses ? null }: +{ lib, stdenv, fetchurl, fetchpatch, zlib, htslib, perl, ncurses ? null }: stdenv.mkDerivation rec { pname = "samtools"; @@ -9,6 +9,15 @@ stdenv.mkDerivation rec { sha256 = "sha256-YWyi4FHMgAmh6cAc/Yx8r4twkW3f9m87dpFAeUZfjGA="; }; + patches = [ + # Pull upstream patch for ncurses-6.3 support + (fetchpatch { + name = "ncurses-6.3.patch"; + url = "https://github.com/samtools/samtools/commit/396ef20eb0854d6b223c3223b60bb7efe42301f7.patch"; + sha256 = "sha256-p0l9ymXK9nqL2w8EytbW+qeaI7dD86IQgIVxacBj838="; + }) + ]; + nativeBuildInputs = [ perl ]; buildInputs = [ zlib ncurses htslib ];