mirror of
https://github.com/NixOS/nixpkgs.git
synced 2024-11-02 15:41:48 +00:00
Merge pull request #34531 from unode/raxml
RAxML: init at 8.2.11 (SSE3 & MPI)
This commit is contained in:
commit
80b096b2b3
42
pkgs/applications/science/biology/raxml/default.nix
Normal file
42
pkgs/applications/science/biology/raxml/default.nix
Normal file
@ -0,0 +1,42 @@
|
||||
{ stdenv
|
||||
, fetchFromGitHub
|
||||
, zlib
|
||||
, pkgs
|
||||
, mpi ? false
|
||||
}:
|
||||
|
||||
stdenv.mkDerivation rec {
|
||||
pname = "RAxML";
|
||||
version = "8.2.11";
|
||||
name = "${pname}-${version}";
|
||||
|
||||
src = fetchFromGitHub {
|
||||
owner = "stamatak";
|
||||
repo = "standard-${pname}";
|
||||
rev = "v${version}";
|
||||
sha256 = "08fmqrr7y5a2fmmrgfz2p0hmn4mn71l5yspxfcwwsqbw6vmdfkhg";
|
||||
};
|
||||
|
||||
buildInputs = if mpi then [ pkgs.openmpi ] else [];
|
||||
|
||||
# TODO darwin, AVX and AVX2 makefile targets
|
||||
buildPhase = if mpi then ''
|
||||
make -f Makefile.MPI.gcc
|
||||
'' else ''
|
||||
make -f Makefile.SSE3.PTHREADS.gcc
|
||||
'';
|
||||
|
||||
installPhase = if mpi then ''
|
||||
mkdir -p $out/bin && cp raxmlHPC-MPI $out/bin
|
||||
'' else ''
|
||||
mkdir -p $out/bin && cp raxmlHPC-PTHREADS-SSE3 $out/bin
|
||||
'';
|
||||
|
||||
meta = with stdenv.lib; {
|
||||
description = "A tool for Phylogenetic Analysis and Post-Analysis of Large Phylogenies";
|
||||
license = licenses.gpl3;
|
||||
homepage = https://sco.h-its.org/exelixis/web/software/raxml/;
|
||||
maintainers = [ maintainers.unode ];
|
||||
platforms = [ "i686-linux" "x86_64-linux" ];
|
||||
};
|
||||
}
|
@ -19108,6 +19108,12 @@ with pkgs;
|
||||
|
||||
plink-ng = callPackage ../applications/science/biology/plink-ng/default.nix { };
|
||||
|
||||
raxml = callPackage ../applications/science/biology/raxml { };
|
||||
|
||||
raxml-mpi = appendToName "mpi" (raxml.override {
|
||||
mpi = true;
|
||||
});
|
||||
|
||||
samtools = callPackage ../applications/science/biology/samtools/default.nix { };
|
||||
|
||||
snpeff = callPackage ../applications/science/biology/snpeff/default.nix { };
|
||||
|
Loading…
Reference in New Issue
Block a user